BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] (235 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040370|gb|ACT57166.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 235 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 235/235 (100%), Positives = 235/235 (100%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD Sbjct: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF Sbjct: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS Sbjct: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC Sbjct: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 >gi|327193021|gb|EGE59933.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 306 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 3/231 (1%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + Sbjct: 76 VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGPSNAGFG 134 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123 + YGD L H LLP+ W + + RL G+LPF+G+AFPVR Sbjct: 135 KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVR 194 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG NG+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQ Sbjct: 195 LGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 254 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAGDG SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 255 LAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 305 >gi|315121858|ref|YP_004062347.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495260|gb|ADR51859.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 235 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 199/235 (84%), Positives = 217/235 (92%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 MSENTL KKS SL ELS +L +IQ RIKARNFALYTIN ALD PRRQQL+CEL+NYD + Sbjct: 1 MSENTLLEKKSFSLLELSSKLKIIQKRIKARNFALYTINCALDSPRRQQLVCELNNYDPE 60 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 SG+IPNILI+TYGD+FLFHFNSGLLPIIW ++QEET+IESSGQ +RL+ G+LPFAGIAF Sbjct: 61 SGEIPNILIKTYGDEFLFHFNSGLLPIIWNNMQEETIIESSGQFFIRLDKGILPFAGIAF 120 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P+RLGFHKNGYV+FT+E LMLANEVIIEAHGACYQVI FL LFKKRSSAARNLTERETS Sbjct: 121 PLRLGFHKNGYVVFTAECLMLANEVIIEAHGACYQVIMGFLALFKKRSSAARNLTERETS 180 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQLAGDGYTSEEIA+KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC Sbjct: 181 CLQLAGDGYTSEEIAKKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 >gi|218514696|ref|ZP_03511536.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 240 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 3/231 (1%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + Sbjct: 10 VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFG 68 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123 + YGD L H LLP+ W + + RL G+LPF+G+AFPVR Sbjct: 69 KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVR 128 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG NG+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQ Sbjct: 129 LGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAGDG SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 189 LAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 239 >gi|190890350|ref|YP_001976892.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695629|gb|ACE89714.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 3/231 (1%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + Sbjct: 18 VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFG 76 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123 + YGD L H LLP+ W + + RL G+LPF+G+AFPVR Sbjct: 77 KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVR 136 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG NG+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQ Sbjct: 137 LGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 196 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAGDG SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 197 LAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|82940563|emb|CAJ44292.1| putative transcription regulator protein MotS, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 107/231 (46%), Positives = 152/231 (65%), Gaps = 3/231 (1%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + + SS +L PRL +Q + A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 18 VRVSRISSRSDLFPRLIAMQKLVDAQGFAIFRVSGS-GLPAKQRLVCELENWGPSNAGFG 76 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPVR Sbjct: 77 KAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFAPFMTRLQDGILPFSGLAFPVR 136 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CLQ Sbjct: 137 LGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 196 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 197 LAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|241203093|ref|YP_002974189.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856983|gb|ACS54650.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 107/231 (46%), Positives = 151/231 (65%), Gaps = 3/231 (1%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + + SS +L PRL +Q A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 18 VRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGS-GIPAKQRLVCELENWGSSNAGFG 76 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPVR 123 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPVR Sbjct: 77 KAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPVR 136 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CLQ Sbjct: 137 LGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 196 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 197 LAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|86356299|ref|YP_468191.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280401|gb|ABC89464.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 112/231 (48%), Positives = 151/231 (65%), Gaps = 3/231 (1%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ L + Sbjct: 18 VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GMPAKQRLVCELENWGLSNVGFG 76 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPVR 123 + YGD L H LLP+ W + + RL+ G+LPF+G+AFPVR Sbjct: 77 KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFSPFMTRLKDGILPFSGLAFPVR 136 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG NG+++FT + + +++ I+E HG C V+ D L L ++RS+AA L+ERE +CLQ Sbjct: 137 LGAVGNGFILFTGDDIDPSSDTIVELHGRCCHVMMDLLSLDERRSAAAEALSEREIACLQ 196 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAGDG SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 197 LAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|262283888|gb|ACY40752.1| VisR [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 108/232 (46%), Positives = 152/232 (65%), Gaps = 3/232 (1%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 T+ + SS +L PRL +Q A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 17 TVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPV 122 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPV Sbjct: 76 GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 RLG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CL Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QLAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 248 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 108/232 (46%), Positives = 153/232 (65%), Gaps = 3/232 (1%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 T+ + SS +L PRL +Q +A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 17 TVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPV 122 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPV Sbjct: 76 GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 RLG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CL Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QLAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|209547915|ref|YP_002279832.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533671|gb|ACI53606.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 106/231 (45%), Positives = 149/231 (64%), Gaps = 3/231 (1%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + + SS +L PRL +Q A FA++ ++ + P +Q+L+CEL N+ + Sbjct: 18 VRVNRISSRSDLFPRLIAMQKLADAHGFAIFRVSGS-GIPAKQRLVCELENWGSSNAGFG 76 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123 + YGD L H LLP+ W + + RL+ G++PF+G+AFPVR Sbjct: 77 KAFTDAYGDALLEHIEKSLLPLSWAGGCDRAAPGPADFAPFMTRLQDGIVPFSGLAFPVR 136 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CLQ Sbjct: 137 LGAVGNGFIVFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 196 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 197 LAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|222084852|ref|YP_002543381.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722300|gb|ACM25456.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 248 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 116/227 (51%), Positives = 159/227 (70%), Gaps = 3/227 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + S +L P+L +Q I A+NFALY ++ + P +Q+L+CEL N+ + + + Sbjct: 22 RISGRSDLFPKLVSMQKLIDAQNFALYRLSGS-GLPSKQRLVCELENWGSANPVMNKAFV 80 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 E YG+ + H LLP++W ++ E+ + RL+ LLPFAG+AFPVRLG Sbjct: 81 EAYGEAMIEHIEKSLLPLMWNGRDSDSTAETPDFAAFTQRLKPHLLPFAGVAFPVRLGSV 140 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NGYV+FT++F+ +A+++I+E HG Q++ + L L ++RS AA L+ERE +CLQLAGD Sbjct: 141 GNGYVVFTAKFMDVASDMIVELHGRSCQIMMELLSLDERRSPAAEALSEREIACLQLAGD 200 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIRFGYI Sbjct: 201 GRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRFGYI 247 >gi|150395471|ref|YP_001325938.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150026986|gb|ABR59103.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 247 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 109/227 (48%), Positives = 145/227 (63%), Gaps = 3/227 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ L RL +Q +I ARNFA+ N P ++L C LHN+ +I LI Sbjct: 21 RAAQAAGLVTRLQAMQRQINARNFAVLRTNGR-GLPAARKLTCVLHNWGTSCEEIARDLI 79 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YG++ L H + LLP++W E E G + RL+ LP++GIA P+RLG Sbjct: 80 DHYGEELLQHLDHSLLPVLWDGKGEHQTAETSDFGPFTRRLKDRKLPYSGIALPIRLGAQ 139 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NGYV+F ++ + E I+E HG Q++TD L +KR A L++RE SCLQ+AGD Sbjct: 140 GNGYVVFAGSYIDASGEQIVELHGRSAQIMTDLLTFDEKRPLKAEALSDREISCLQMAGD 199 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+ SEEIAEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI Sbjct: 200 GHISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 246 >gi|167566108|ref|ZP_02359024.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Burkholderia oklahomensis EO147] Length = 236 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 15/240 (6%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +++ L+ + S+ E+ L + NF+ P + I L NY Sbjct: 5 LTDLLLSITQKSTSSEIFSSLEKYTRELGFDNFSY---GFCHPIPFTKPRIVILSNYPER 61 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + L D + H + P W + V + G A Sbjct: 62 WRGRYSELGYVNIDPTVLHGRNSQSPFTWSELPTSDV-----RSFWDEANAHGLVVGWAK 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNL 174 + G + L + + + ++ D + K+ +++A L Sbjct: 117 SILDSDGGLGMLTLARSNEELCGKELAAKNLRMC-LLADLTHMVLSDAYRKEMTASADKL 175 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L+ DG T++EI L +S+ TV + +A VKL A N+ A+A+A G + Sbjct: 176 SAREVEILRWHADGKTADEIGRILSISIDTVKFHTKNAVVKLGASNKTAAVARAAIMGLL 235 >gi|227820844|ref|YP_002824814.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339843|gb|ACP24061.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 101/220 (45%), Positives = 141/220 (64%), Gaps = 3/220 (1%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L RL +Q ++ A+NFA+ +N P ++L C LHN+ S + L++ YG++ Sbjct: 27 LVTRLQAMQRQVNAKNFAVLRVNGR-GMPATRKLTCVLHNWGAASETNAHELLKVYGEEL 85 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQ--LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L H + L ++W E ++ S RL+G L ++GIAFP+RLG NGYV+F Sbjct: 86 LQHLDRSPLAVLWDGQGEHQAADAPDMALFSNRLKGRKLSYSGIAFPIRLGAQGNGYVVF 145 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ E +++ HG C QV+ D L ++R +L++RE +CLQ+AGDGY SEEI Sbjct: 146 AGSYIDAPAEQVLDLHGRCAQVMADMLAADERRLFKGESLSDREIACLQMAGDGYISEEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI Sbjct: 206 AEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 245 >gi|325291914|ref|YP_004277778.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059767|gb|ADY63458.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 248 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 108/225 (48%), Positives = 147/225 (65%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S +L P+L +Q + ARNF + +A FP +++L CEL N+ +++ + I Sbjct: 24 TSRSDLFPKLVAMQKLVGARNFVVTK-AAASGFPNKKKLTCELENWGMNAAEQSAQFIRA 82 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 GD L H + LLP+IW++ + L R+E LP+AG+A PVRLG N Sbjct: 83 VGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALMRRIENDTLPYAGLALPVRLGTIGN 142 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++F L+L NEV+IE H C +++ D L L +++ + + L+ERE +CLQLAGDG Sbjct: 143 GYIVFCGSNLVLDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDGR 202 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 203 ISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|15964401|ref|NP_384754.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307311543|ref|ZP_07591184.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318898|ref|ZP_07598329.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|3894103|emb|CAA11949.1| unnamed protein product [Sinorhizobium meliloti] gi|15073578|emb|CAC45220.1| Regulator of flagellar operons, LuxR family, probable forming a heterodimer with VisN [Sinorhizobium meliloti 1021] gi|306895312|gb|EFN26067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899560|gb|EFN30189.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 107/220 (48%), Positives = 139/220 (63%), Gaps = 3/220 (1%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L RL +Q +I A+NFA+ N P ++L C LHN+ + LI YGD+ Sbjct: 27 LVTRLQAMQRQINAKNFAVLRTNGR-GLPATRKLTCVLHNWGASCEENARDLIMLYGDEL 85 Query: 77 LFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L H + LLP++W E E G + RL LP++GIAFP+RLG NGYV+F Sbjct: 86 LQHLDLSLLPVLWNGQGEHQTAEVSDFGPFTRRLRERKLPYSGIAFPIRLGAQGNGYVMF 145 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + E I+E HG Q++ D L +KR A L++RE +CLQ+AGDG+ SEEI Sbjct: 146 AGSYIDASGEQIVELHGRSAQIMADLLAADEKRLFKAEALSDREIACLQMAGDGHISEEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI Sbjct: 206 AEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 245 >gi|159045392|ref|YP_001534186.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913152|gb|ABV94585.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 236 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 22/237 (9%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 +++ SL ++ RL ++ ++ NFA + ++++ + YD Sbjct: 11 DLQEAKSLDDVQARLFGLRESLEVENFAYHCLDASGNK-------YGAMTYDAPWVKRYI 63 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + D + P+ W+ + + + G++ PVR Sbjct: 64 EMDYARVDPVIKGTYQRFHPVDWKQLDWSPKAAR--EFMGEALETGVGNQGLSVPVRGPN 121 Query: 127 HKNGYVIFTSEFLMLANE---------VIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + + A E I+ AH + LEL + + A+ L+ R Sbjct: 122 GQFAVFSVNNRATDAAWESYQKEYLKTFILAAHFINQRA----LELEEDINPTAKPLSPR 177 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+ L +G + ++AEKL +S HT+ Y+ SA KL A N A+A+A+ G I Sbjct: 178 ESDALTHLANGLSRGQVAEKLKISEHTLRVYIESARFKLGAANTTHAVARAMVRGLI 234 >gi|15887874|ref|NP_353555.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155462|gb|AAK86340.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 251 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 107/225 (47%), Positives = 147/225 (65%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S +L P+L +Q + ARNF + +A FP ++++ CEL N+ +++ + I Sbjct: 27 TSRSDLFPKLVAMQKLVGARNFVVTK-AAASGFPNKKKMTCELENWGMNAAEQSAQFIRA 85 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 GD L H + LLP+IW++ + L R+E LP+AG+A PVRLG N Sbjct: 86 VGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALLRRIENDTLPYAGLALPVRLGTIGN 145 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++F L+L NEV+IE H C +++ D L L +++ + + L+ERE +CLQLAGDG Sbjct: 146 GYIVFCGTNLILDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDGR 205 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 206 ISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250 >gi|145301148|ref|YP_001143989.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853920|gb|ABO92241.1| transcriptional regulator, LuxR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 10/232 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K+ E+ +L +++ F + + ++ + +N + + Sbjct: 17 KAKKTSEIQQQLERFSHQM---GFDYFRLLIIFPISMQKSHVALFNNCPTSWFEAYSERH 73 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D +F PI W + ++ + S+ + + L G++FP+ + Sbjct: 74 YLTQDPVVFLGLKQTQPIFWNKLDCDSPWLPSASREVMNLAADFGVRNGVSFPLHTPQGE 133 Query: 129 NGYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCL 182 +G + F S L E + + L+L K R ++LTE RE CL Sbjct: 134 HGILSFISKEKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDLMKHLTELSDREKECL 193 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG+S TVN +L T K D+ NR QAIAK+I G I Sbjct: 194 FWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 245 >gi|220921013|ref|YP_002496314.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945619|gb|ACL56011.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 78/232 (33%), Gaps = 9/232 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +SS L L +F + + L + ++ Sbjct: 16 QAASSQTALFSELKEAGRYFGYDSFIVTGLPHRQGENLND--CSLLVGWPMEWAKRYTER 73 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D + L P +W + + + G P+ + Sbjct: 74 RYIHVDPVIAQIRRTLDPFMWDEAPYD-RSDPGPATVMNESPSFGLNQGFCVPIHRIDGR 132 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCL 182 V F + + L+++ H + L S+ A + RE C+ Sbjct: 133 EAGVSFGASRMDLSDDARAGLHLVAIYAFSAARALSAMPSNPADPERQPPRCSAREIECM 192 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + A G T EI+E L LS TV AYL +A KL NR+ IA+AIR G I Sbjct: 193 RWAAAGKTGWEISEILSLSQRTVEAYLNNAARKLGVANRVHLIAEAIRHGLI 244 >gi|330831695|ref|YP_004394647.1| LuxR family transcriptional regulator [Aeromonas veronii B565] gi|328806831|gb|AEB52030.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565] Length = 258 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 10/232 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K++ ++ L +++ F + + ++ + +N D + Sbjct: 15 KATKTSDIQQLLERFSHQM---GFDYFRLLIIFPISMQKSHVALFNNCPTTWFDAYSENQ 71 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D ++ PI W + ++ + S+ + + L G++FP+ + Sbjct: 72 YLTQDPVVYLGLKQTQPIFWNKLDCDSPWLPSASRDVMNLAADFGVRNGVSFPLHTPQGE 131 Query: 129 NGYVIFTSEF---LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCL 182 +G + F ++ L E + + L+L K R + LTE RE CL Sbjct: 132 HGILSFITKDKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDMMKYLTELSDREKECL 191 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG+S TVN +L T K D+ NR QAIAK I G I Sbjct: 192 FWASEGKTSWEIATILGISERTVNFHLTQVTNKTDSKNRSQAIAKGITSGII 243 >gi|222149994|ref|YP_002550951.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736976|gb|ACM37939.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 251 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 105/238 (44%), Positives = 146/238 (61%), Gaps = 6/238 (2%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 S L + +++ ++ PRL +Q I AR+FA++ + + PR++ L CE ++ Sbjct: 14 SAADLKARLAANRGDIFPRLIAMQKAINARSFAVFRVAGS-GLPRKRMLQCECESWAASG 72 Query: 62 G--DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI--ESSGQLSVRLEGGLLPFAG 117 + + YGD L H + LLP++W + T G RL G LPF+G Sbjct: 73 MVGSYSDAFVSCYGDLLLSHIDDLLLPLMWNAKDNATFCISSEFGAFVSRLPAGNLPFSG 132 Query: 118 IAFPVRLGFHKNGYVIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 +AFPVRLG NGYVIF L ++V+I+ H +++ D L L +++ + + L++ Sbjct: 133 VAFPVRLGAVGNGYVIFALNGSEDLDSDVMIDMHNRSCKLMMDILSLSERKVAPSEALSD 192 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +CLQLAGDG SEEIAE LGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 193 REIACLQLAGDGRISEEIAENLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250 >gi|126730312|ref|ZP_01746123.1| autoinducer-binding transcriptional regulator LuxR [Sagittula stellata E-37] gi|126709045|gb|EBA08100.1| autoinducer-binding transcriptional regulator LuxR [Sagittula stellata E-37] Length = 226 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 15/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + L++L + +++ + + +NSA + YDL+ + Sbjct: 2 ESADGLEDLQLLIEELRDEYGVDHIVYHWVNSAGEQ-------YGCGTYDLEWVNHYIEK 54 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + P+ W+ + + S+ G + G + P+R + Sbjct: 55 GYLRIDPVIQGCYQRFHPVNWKRLDWSSK--SARAFLEDAIGHGIGNQGYSIPIRGPNGQ 112 Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCL 182 + E + + + LE R+ A+ L+ RE + Sbjct: 113 FALFTMSHSCNDDEWEAFTISNRRDLILVAHSFNSKALEFEPGRTPEPAQPLSPREIEAM 172 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY+ + A+ L +S HT+ Y+ SA KL A+N A+A+A+ G I Sbjct: 173 TLLAIGYSRAQAADTLSISEHTLRVYVESARHKLGAMNTTHAVAQALSRGVI 224 >gi|39933398|ref|NP_945674.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39647244|emb|CAE25765.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 243 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 7/240 (2%) Query: 1 MSENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICEL 54 + E+ L G+++ + RL ++ I + F Y + + Sbjct: 3 VGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLA 62 Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + + D D+ + D H + + P +W + + + + Sbjct: 63 NGWPRDWFDLYVSENFSAVDPVPRHGATTVHPFVWSDAPYDRDRDPAAHRVMTRAAEFGL 122 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G P+ + + + L+ + L + + L Sbjct: 123 VEGYCIPLHYDDG-SAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRL 181 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQ A G T+ EI+ L ++ TV +L A KLDA NR A+AKA+ G I Sbjct: 182 TPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241 >gi|192288754|ref|YP_001989359.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192282503|gb|ACE98883.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 243 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 7/240 (2%) Query: 1 MSENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICEL 54 + E+ L G+++ + RL ++ I + F Y + + Sbjct: 3 VGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLA 62 Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + + D D+ + D H + + P +W + + + + Sbjct: 63 NGWPRDWFDLYVSENFSAVDPVPRHGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEFGL 122 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G P+ + + + L+ + L + + L Sbjct: 123 VEGYCIPLHYDDG-SAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRL 181 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQ A G T+ EI+ L ++ TV +L A KLDA NR A+AKA+ G I Sbjct: 182 TPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241 >gi|115524334|ref|YP_781245.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115518281|gb|ABJ06265.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 246 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 69/227 (30%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ S+L +S + I+ A F + + + + + + + Sbjct: 18 VEELSTLTTISAAIDFIEKGFCAYGFETIIVTGIPNHKQSFSQMVMAKRWPDEWFKLYTQ 77 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + H P W E + G PV Sbjct: 78 NNYHRDDPVVRHLRKSFNPFEWSDAPYSRRNEPRAAAVMDRAADFRMSRGFIVPVHGLAG 137 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 V + + L H L + A LT RE L Sbjct: 138 YEAAVSLGGDHIDLNPRSKPALHLMAMYAFDRIRSLVSPANDAPPRLTHRECETLNWTAQ 197 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI E L ++ T +L +A KL AVN+ A+A AIR I Sbjct: 198 GKSAWEIGEILQIAQRTAEEHLATAARKLGAVNKTHAVAIAIRQKLI 244 >gi|316931698|ref|YP_004106680.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315599412|gb|ADU41947.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 243 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 7/240 (2%) Query: 1 MSENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICEL 54 + E+ L G+++ + RL ++ I + F Y I + Sbjct: 3 VGEDQLWGRRALEFVDAVERLDAPALVSQFESLIASCGFTAYIIAGLPSRNAGLPELTLA 62 Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + + D D+ + D H S + P +W + + + + Sbjct: 63 NGWPRDWFDLYVSENFSAVDPVPRHVASTVHPFVWSEAPYDRDRDPAAHRVMTRAAEFGL 122 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G P+ + + + L+ + L + + L Sbjct: 123 VEGYCIPLHYDDG-SAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRTLGRPKPGRRNKL 181 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQ A G T+ EI+ L ++ TV +L A KLDA NR A+AKA+ G I Sbjct: 182 TARECEILQWAAQGKTAWEISMILCIAERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241 >gi|9297072|sp|P74946|VANR_VIBAN RecName: Full=Transcriptional activator protein vanR gi|1568660|gb|AAC45213.1| VanR [Listonella anguillarum] Length = 240 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 13/232 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ +S +L L+ + N I F L+ ++ + NY + Sbjct: 12 QQITSHDDLENVLNGLNNLIGHEFF-LFGLSFQPTLKTSE--TLVTDNYPNSWRQQYDES 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D + + + LPI W + + + G++ AG + P+ + Sbjct: 69 GFMHIDPIVKYSITNFLPIRW---DDAKRVNNDGRVIFEEARCNGLKAGFSIPIHGLRGE 125 Query: 129 NGYVIFTSEFL---MLANEVIIEAHGA---CYQVITDFLELFKKRSSAARNLTERETSCL 182 G + F + L + I + I + K A LT RE CL Sbjct: 126 FGMISFATSDTKSYDLNQQSIHTSQLIVPLLAHNIGNITRYHKDAKPRA-VLTAREVQCL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G ++ EIA + S TV + +A KL A NR QAI KAI GYI Sbjct: 185 AWAAEGKSAWEIATIINTSERTVKFHFSNACKKLGATNRYQAITKAILGGYI 236 >gi|167589289|ref|ZP_02381677.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 77/233 (33%), Gaps = 16/233 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ S +E+ + + + + +P + I L+NY Sbjct: 5 EQADSEREIYGWIEHAARSL---GYEYCAYGLRMPWPVSRPRIYMLNNYPEAWQKRYQEA 61 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + H P++W + G Sbjct: 62 RYVDIDPTVKHARRSQAPLVWSDACFAATPQ-----LWCEAQAHGLRHGWTQSAFDSCGV 116 Query: 129 NGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +G + + + + +T L L K R LT+RE Sbjct: 117 SGMLTLARSNGPITPAELEQNEFKMRWLVSTAHLAMTGKL-LPKLAPDTERGLTDREVEV 175 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ A DG TS EI+ L +SV TVN ++ +A KL A N+ A+ +A G + Sbjct: 176 LKWAADGKTSGEISTILVISVDTVNFHVKNAVSKLKAANKTSAVVRATMLGLL 228 >gi|260425367|ref|ZP_05779347.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp. SE45] gi|260423307|gb|EEX16557.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp. SE45] Length = 242 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 15/234 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + + ++L +++R K + + +++ + YD + Sbjct: 16 QLELAERREDLQSVAEALRDRFKVDHLVYHWVSANGEQ-------YGCGTYDPVWVERYL 68 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + P+ W+ + + + + G + P+R Sbjct: 69 EKGYLRIDPVIQGCFQRFHPVDWKRLDWSSKAARA--FQWDAIAHGVGNQGYSIPIRGPN 126 Query: 127 HKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFK-KRSSAARNLTERETS 180 + A + + LEL +R A+ L+ RE Sbjct: 127 GQFALFTVNHSCDDEAWAEFTALNRRDMILIAHYFNQKALELEPGRRPEPAQPLSPREIE 186 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L GY+ ++AE L +S HT+ Y+ SA KL A+N A+A+A+ G I Sbjct: 187 AMTLIAVGYSRAQVAETLSISEHTLRVYIESARFKLGAMNTTHAVARALSRGLI 240 >gi|218532854|ref|YP_002423670.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525157|gb|ACK85742.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 243 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 6/231 (2%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYT---INSALDFPRRQQLICELHNYDLDSGD 63 + ++ S +++ L I R+ A I R Q+ L N + Sbjct: 15 SLDRAHSREDI---LRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWNR 71 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y D + S W I+ V++ + + G G P+ Sbjct: 72 LYFSKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLA 131 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G + F L ++ V+ L + S LT RE LQ Sbjct: 132 TLEEERGGLTFAGPRLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQ 191 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 192 WVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242 >gi|163853910|ref|YP_001641953.1| autoinducer-binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665515|gb|ABY32882.1| Autoinducer-binding domain protein [Methylobacterium extorquens PA1] Length = 243 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 6/231 (2%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYT---INSALDFPRRQQLICELHNYDLDSGD 63 + ++ S +++ L I R+ A I R Q+ L N + Sbjct: 15 SLDRAHSREDI---LRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWNR 71 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y D + S W I+ V++ + + G G P+ Sbjct: 72 LYFSKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLA 131 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G + F L ++ V+ L + S LT RE LQ Sbjct: 132 TLEEERGGLTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQ 191 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 192 WVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242 >gi|117620077|ref|YP_855658.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561484|gb|ABK38432.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 264 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 77/226 (34%), Gaps = 4/226 (1%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 + + + L++ F + + ++ + + D Sbjct: 23 TAADERTIVTLLRELSGRMGFDYFRLALIFPSTIQRPDVIIFNGCPQAWVDTYTSSGFFA 82 Query: 73 GDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + PI+W + +E + G+ ++L GI P G Sbjct: 83 IDPIVKCAMTKSTPILWADVVNDEERCDEQGREMMQLANEYGICDGITLPWHGANGHVGL 142 Query: 132 VIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + F + + + + + S L+ RE + A +G Sbjct: 143 LSFITSTPRTQQQWLSAVPFISWLSMHIFEAVARVCLAGLSPHDALSLRELEVCRWAAEG 202 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA+ LG++ TV +L + KL A ++ QAI+ A++ G + Sbjct: 203 KQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGMV 248 >gi|88797814|ref|ZP_01113402.1| LuxR, transcriptional regulator [Reinekea sp. MED297] gi|88779491|gb|EAR10678.1| LuxR, transcriptional regulator [Reinekea sp. MED297] Length = 240 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 88/233 (37%), Gaps = 11/233 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ S EL L I ++ F + AL I NY + + + Sbjct: 8 QQAQSTSELPEILESISQVVE---FDYFLFGLALPNSITHSDILMYDNYPGEWRRVYDES 64 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + S +P+ W I E S + AG + P+ + Sbjct: 65 GYAKRDPIVQYSISNYMPVTWAQISESPSYSRSDLKIMWEAEASGLKAGFSLPIHGAVGE 124 Query: 129 NGYVIFTSEFLMLA-----NEVIIEAHGACYQVITDF--LELFKKRSSAARNLTERETSC 181 G + F S E I + L + + + A LT+RE C Sbjct: 125 FGMISFASNHNTDEQRLKYAEAIPVIQMLVPAIQDAVKRLRVSESKEPPA-KLTKREIEC 183 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A +G +S EI++ LG S T +L +A KL A NR QAI+KA+ G I Sbjct: 184 LTWATEGKSSWEISQILGCSERTAIFHLSNAANKLGATNRYQAISKALLCGII 236 >gi|82703532|ref|YP_413098.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411597|gb|ABB75706.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 244 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 80/231 (34%), Gaps = 14/231 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S++EL I + +F ++ + L Y + + Sbjct: 14 DSVEELHSATTTIARAMGFEHFLY---GVQVNTSLTRPYRFILSCYPEEWRKHYDKEGYA 70 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + H +PIIW+ E +G +F V G + Sbjct: 71 NFDPTVSHCARTSIPIIWKK---EIFKGRRETRVRNEAKDCGLVSGASFSVHGGRGEAAM 127 Query: 132 VIFTSEFLMLANE-----VIIEAHGACYQVITDFLE--LFKKRSSAARN-LTERETSCLQ 183 + + + + +A + L K + LTERE CL Sbjct: 128 LSLATSRESREAQNDILATMAKAQLLTCYLHEAVQRIVLSKGPLPVKKANLTEREQECLL 187 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIA + +S TV +L +A KL VNR QAI++A+ G I Sbjct: 188 WAAEGKTGWEIANIVKISERTVTFHLQNAIQKLGVVNRQQAISRALSMGLI 238 >gi|27376354|ref|NP_767883.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349494|dbj|BAC46508.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 2/223 (0%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNILIETY 72 L +++ L + + F + + + D+ + + Sbjct: 18 LPDVASILDAMSRTLGQHGFDYFCSSYVAPLSTESPREAVLAERLPAGFLDMYSEAQYVW 77 Query: 73 GDDFLFHFNSGLLPIIW-QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D L + + L P W + + E VR G+ PV + G Sbjct: 78 HDPALRYCRTTLQPFRWFREAPYDPEREPRAVELVRRARDFGMVDGVVIPVISPAGRTGQ 137 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V F + L + H L+L ++ L+ RE L LA G +S Sbjct: 138 VWFGGAEIDLPERDLPALHLMALYAFDRVLKLRGLPAAPQLALSLREREVLTLAAVGRSS 197 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA+ L ++ TV A++ S KL A R QA+ A+R I Sbjct: 198 DEIADALAITGRTVKAHIKSCCKKLGAATRTQAVMIAMRDRII 240 >gi|27376173|ref|NP_767702.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349312|dbj|BAC46327.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 68/218 (31%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + ++ ++ F + + +R + + ++ D Sbjct: 23 VPDAMNALEAAFGRFGFETIIVTGLPNPDQRFAQMVLAKRWPAGWFNLYTQNNYDRFDPV 82 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + P W + +E S + G G P+ V Sbjct: 83 VRLCRQSVNPFEWSEAPYDAELEPSAAEVMNRAGDFRMSRGFIVPIHGLTGYEAAVSLGG 142 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L L H L + + LT RE + A G ++ EI E Sbjct: 143 VHLDLNPRSKPALHLMAMYGFDHIRRLLEPTPYPSTRLTPREREVISWASQGKSAWEIGE 202 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L ++ T +L +A KL AVNR A+A AIR I Sbjct: 203 ILHITQRTAEEHLATAARKLGAVNRTHAVALAIRHKII 240 >gi|88812489|ref|ZP_01127738.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] gi|88790275|gb|EAR21393.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] Length = 249 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 10/231 (4%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++ + + +F ++ + + + + D Sbjct: 17 ADGVEGVQRLCAALGEAYGFDHFIY---GASFPTSLIKPAVLVISGHPEAWRDHYQACGY 73 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H + P+IWQ + + I+ ++ +G++ +R + G Sbjct: 74 LAVDPAVQHCTRSIRPLIWQDLMLDPKIDEKPFTVMQEAREFGLVSGVSLSIRGSRGELG 133 Query: 131 YVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQ 183 + F+SE I + + V L + S LT RE CL Sbjct: 134 VLSFSSERTAQQTRSEIDSAIPDLYLLSAYVHEAVGRLVTQGSLPFNRPELTAREHECLL 193 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG+S T +L +A +L+A +R QA+A+A+ G I Sbjct: 194 WAAEGKTSWEIARILGISERTAIFHLQNAARRLNASSRQQAVARAVSQGLI 244 >gi|171316408|ref|ZP_02905627.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098441|gb|EDT43244.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 237 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 74/231 (32%), Gaps = 16/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ ++A F + + P + NY D Sbjct: 15 AKSEADVF---LEFTADVRALGFEYCSFGLRVPLPVSKPQFMLQSNYPQTWVDRYVSQNY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H S + P+IW++ + +E G P G Sbjct: 72 FAVDPTVRHGLSQMSPLIWRADSQTQSVE-----FWDEAEHHGLRHGWCMPSISRTGAIG 126 Query: 131 YVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 V + + E ++ L L K A LT RE LQ Sbjct: 127 LVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHL-LAKFVPEYAVELTARERETLQ 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T EI + + + TV +L +A KL+A N+ +A KA G + Sbjct: 186 WSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAMLGLL 236 >gi|260770016|ref|ZP_05878949.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] gi|260615354|gb|EEX40540.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] Length = 240 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 13/232 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +S + L L + N I F L+ ++ + NY + Sbjct: 12 QVITSYENLESTLAALNNIIDHEYF-LFGLSLQPTLTTSE--TIITDNYPASWRQQYDEA 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D + + + LPI W I V + G + P+ + Sbjct: 69 GFMHVDPIVQYSMTNFLPIRWSQIP---VASNQAHEMFEEARINGLKEGFSIPIHGLRGE 125 Query: 129 NGYVIFTSEFL---MLANEVIIEAHGA---CYQVITDFLELFKKRSSAARNLTERETSCL 182 G + F + L + I + I + K + LT RE CL Sbjct: 126 FGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCHKDAAPRIE-LTARENQCL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G ++ EIA+ + S TV ++ +A KL A NR QAI KAI GYI Sbjct: 185 TWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAILGGYI 236 >gi|300693708|ref|YP_003749681.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (luxr family) [Ralstonia solanacearum PSI07] gi|299075745|emb|CBJ35050.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum PSI07] Length = 238 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 14/236 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + + ++S ++ + A F P + I L+NY + Sbjct: 10 DIFSEAATSTSDVFAHIEAAA---LALGFEHVAYGFRAPLPLSEPKIILLNNYPQAWRER 66 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D + H P+IW + G A Sbjct: 67 YLEAGYLHVDPSVAHACRSQAPVIWSDPLFQYTPA-----LWDEAQAQGLRVGWAQSSLD 121 Query: 125 GFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSS--AARNLTERE 178 G + + L + + + L + + + +LT RE Sbjct: 122 SLGVGGMLSLSRSCEPLTARELADNTRRMQWLTHMAHLALSRLLRADLAGDSDDSLTGRE 181 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A GY+ Sbjct: 182 VEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLGYL 237 >gi|315182540|gb|ADT89453.1| Transcriptional activator protein vanR [Vibrio furnissii NCTC 11218] Length = 240 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 13/232 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +S + L L + N I F L+ ++ + NY + Sbjct: 12 QVITSYENLETTLAALNNIIDHEYF-LFGLSLQPTLTTSE--TLITDNYPASWRQQYDEA 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D + + + LPI W I V + G + P+ + Sbjct: 69 GFMHVDPIVQYSMTNFLPIRWSQIP---VASNQAHEMFEEARINGLKEGFSIPIHGLRGE 125 Query: 129 NGYVIFTSEFL---MLANEVIIEAHGA---CYQVITDFLELFKKRSSAARNLTERETSCL 182 G + F + L + I + I + K + LT RE CL Sbjct: 126 FGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCHKDAAPRIE-LTARENQCL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G ++ EIA+ + S TV ++ +A KL A NR QAI KAI GYI Sbjct: 185 TWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAILGGYI 236 >gi|188584215|ref|YP_001927660.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347713|gb|ACB83125.1| transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 243 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 6/231 (2%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYT---INSALDFPRRQQLICELHNYDLDSGD 63 + ++ S +++ L I R+ A I R Q+ L N + Sbjct: 15 SLDRAHSREDI---LRAIMPRLNAMGIEYVISAMIPQKRLPARTQKNFVILENTSDEWNR 71 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y D + S W + + + + G P+ Sbjct: 72 LYFSKGYMYFDPIVQATLSSTTGFRWSETDPAGLQDPKARQVMNEAVEFGLGDGFTVPLA 131 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G + F L ++ V+ L + S LT RE LQ Sbjct: 132 TLEEERGGLTFAGRQLDISPGQRGMLTLIASYVVGQTLLIDNGPSERRMGLTPRERESLQ 191 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 192 WVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242 >gi|260461224|ref|ZP_05809472.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785401|ref|YP_004144877.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032761|gb|EEW34024.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171289|gb|ADV14827.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 248 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 79/228 (34%), Gaps = 13/228 (5%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPR------RQQLICELHNYDLDSGDIPNIL 68 ++L L A NF I P + + NY + + + Sbjct: 24 EQLFELLSAF-----ALNFDCPWIAYGPLAPEQRVLKPTRPDSAMMWNYPDEWQERYLKM 78 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + G+ P W + + + + G +G+ P+ Sbjct: 79 GYAKIDPLIKKGRKGVGPFRWSEVYTHESTTENERRVLDEAGTFGLKSGVTVPLHGPAGS 138 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAG 186 + F S L N I A Q +L +RSS A +++RE C+ Sbjct: 139 FKLMCFAKSADCELENRAITYLQIAAVQFHLRVAKLGTQRSSEHAYKISDRERECIHWIS 198 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI LG S +TV+ ++ + KLD R AKA+ G I Sbjct: 199 KGKTSGEIGTILGRSQNTVDFHVKNVMRKLDTTRRTALAAKAVELGII 246 >gi|254473001|ref|ZP_05086399.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] gi|211957722|gb|EEA92924.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] Length = 239 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 1/214 (0%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 I ++ F + + + + L + + D + Sbjct: 25 KRIAELGQSFGFTSFCLAAIPEAGASFDGSIMLSGWRPEWQQRYLDRDYVQNDPIVAKAR 84 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 + P +W S+ + + ++ Q + + G+ PV G +IF + L Sbjct: 85 TASRPFLWSSVARDRNLTAAAQQVLSEARDYGMYDGVCVPVHGLQGYQGMLIFGGPEVRL 144 Query: 142 ANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 I H EL + LT RE CL+ + G TS EI++ L + Sbjct: 145 NEREISVLHLVGIYASNKVRELVGANTNRPRHRLTPRELECLKWSAAGKTSWEISQILNI 204 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HT + YL SA KL A NR A+A+ R G I Sbjct: 205 SQHTADWYLASAARKLHAANRTHAVAEGFRLGLI 238 >gi|149913176|ref|ZP_01901710.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. AzwK-3b] gi|149813582|gb|EDM73408.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. AzwK-3b] Length = 242 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 15/230 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S + +L + +++ I + + ++S + Y + Sbjct: 19 ASDIDDLQRLIERLRDEIGVDHVVYHWVSSGGEQ-------YGCGTYPAAWVQLYVAKDY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + P+ W+ + + + + G + P+R + Sbjct: 72 LRIDPVVQGCYQTFHPVDWKRLDWSSRAARA--FLSDAVAHGIGNQGYSVPLRGPNGQFA 129 Query: 131 YVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSS-AARNLTERETSCLQL 184 + A + + H + L L R A+ L+ RE + L Sbjct: 130 LFSVSHHCTDEAWAMFTDTHRRTLILIAHYFNHKALLLEPGRCPLTAQPLSPREVDVITL 189 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+ ++AE L +S HT+ Y+ SA +KL A+N + A+++AI G I Sbjct: 190 LAMGYSRAQVAETLMISEHTLRTYVESARLKLGAINTLHAVSRAITRGLI 239 >gi|170697219|ref|ZP_02888313.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137839|gb|EDT06073.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 237 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 74/231 (32%), Gaps = 16/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ ++A F + + P + NY D Sbjct: 15 AKSEADVF---LEFTADVRALGFEYCSFGLRIPLPVSKPQFMLQSNYPQTWVDRYVSQNY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H S + P+IW++ + +E G P G Sbjct: 72 FAVDPTVRHGLSQMSPLIWRADSQTQSVE-----FWDEAEHHGLRHGWCMPSISRTGAIG 126 Query: 131 YVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 V + + E ++ L L + A LT RE LQ Sbjct: 127 LVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHL-LARFVPEYAVELTARERETLQ 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T EI + + + TV +L +A KL+A N+ +A KA G + Sbjct: 186 WSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAMLGLL 236 >gi|184156458|ref|YP_001844797.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] gi|183208052|gb|ACC55450.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] Length = 238 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 76/224 (33%), Gaps = 12/224 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L + I +R+ F + L+NY D Sbjct: 21 LFDIVKSIASRL---GFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVEQQYVKIDPT 77 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + H L P++W S +T E G A R G + Sbjct: 78 VQHCMVSLQPLVWSSQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLAR 134 Query: 137 EFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYT 190 L+ + + V + ++ A NL T RE L+ +G T Sbjct: 135 SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKT 194 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G + Sbjct: 195 SAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|156933489|ref|YP_001437405.1| DNA-binding transcriptional activator SdiA [Cronobacter sakazakii ATCC BAA-894] gi|156531743|gb|ABU76569.1| hypothetical protein ESA_01307 [Cronobacter sakazakii ATCC BAA-894] Length = 241 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 19/245 (7%) Query: 2 SENTLTGKKSSSL-------QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL 54 S+ ++ ++ ++ L ++ + + + P + + Sbjct: 4 SDFFNWRREMTTRFQEIQDSSDIYSLLKTETQNME---YDYFALCVRHPVPFTRPKLTLH 60 Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 Y + D L N + P+ W E Sbjct: 61 TTYPEAWLEHYQAENYYVIDPVLKPANYLVGPLSWNDALFAGAAEE----LWNAARDHGL 116 Query: 115 FAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 G+ V G++ + M +E+ + Q + + L ++ Sbjct: 117 VKGVTQCVIAPNRAQGFLSVSGTSPRGHSMADDELALRLQHLVEQSLVTMMRLEDPAATV 176 Query: 171 AR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L++RE LQ +G TS EIA L +S +TVN + + K +A N+ Q A Sbjct: 177 LEMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAA 236 Query: 230 RFGYI 234 G I Sbjct: 237 AIGLI 241 >gi|254477011|ref|ZP_05090397.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp. R11] gi|214031254|gb|EEB72089.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp. R11] Length = 239 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 80/231 (34%), Gaps = 15/231 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +S++ L + + + + ++SA D Y + Sbjct: 16 AASTVDGLREIVERVCESFGVDHAMYHWVDSAGDH-------YYFGTYKDEWVARYQEKS 68 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + P+ W+ + + + + G + P+R + Sbjct: 69 YVRVDPVIIGCYQRFHPVDWRRLDWSSKPAR--EFMQDARDHDVGNQGYSIPIRGPKGQF 126 Query: 130 GYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSS-AARNLTERETSCLQ 183 ++ + IE H + + LE R + L+ RE L Sbjct: 127 ALFTVSNNCDDATWDNFIERHSRDLILMGHYLNRKVLEFEPDRGPGQVQPLSPREIDALT 186 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY+ ++A+ L +S HT+ Y+ SA KL A+N AIA+A+ G I Sbjct: 187 LLAMGYSRAQVAQTLSISEHTLRVYIESARFKLGAINTTHAIARALSLGLI 237 >gi|17548999|ref|NP_522339.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 248 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 14/229 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S ++ + A F P + + L+NY Sbjct: 27 ASTSDVFEHIEAAA---LALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRARYLEAGYL 83 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + D + PI+W + V G A G Sbjct: 84 HVDPSVAQACRSQAPIVWSDRLFQDVPA-----LWDEAKAHGLRVGWAQSSLDSLGVGGM 138 Query: 132 VIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLA 185 + + L+ + E + L + + + NLT RE ++ Sbjct: 139 LSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYSDDNLTNREVEVMKWT 198 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A GY+ Sbjct: 199 ADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLGYL 247 >gi|171315924|ref|ZP_02905153.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098927|gb|EDT43717.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 228 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 15/234 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T ++ S ++ + + F + + P + + Y Sbjct: 3 TLSRALSFDDVFEIVAAQARALD---FEMCAYGARDPLPVTRPTFRTRNTYPDSWQQRYV 59 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + P++W V + G + P+R Sbjct: 60 EGNYFARDPVVRYGLIYTSPLVW------PVDACADAPFWEEAKAHGVAHGWSQPIRDKH 113 Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRSSAAR--NLTERETS 180 + +++ + + L ++A + T RE Sbjct: 114 GRIAMWSVARSADPISDLELAATEGRLIYLAHAAHAVNSRLADAPAAAMQMGPFTTREKE 173 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ A DG T+ EIA L +S T+ ++ + KL++VN+ QAI KA+ G I Sbjct: 174 VLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227 >gi|260431508|ref|ZP_05785479.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter lacuscaerulensis ITI-1157] gi|260415336|gb|EEX08595.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter lacuscaerulensis ITI-1157] Length = 239 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 15/240 (6%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + SS+L EL ++N +K N + ++ A D Y Sbjct: 7 LSQVLEDLENSSTLDELGAVAERLRNALKIDNIVYHWVDGAGDQ-------YGCTTYSDS 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D + P+ W+S+ + G + Sbjct: 60 WAQRYRERNYHRIDPVILGCFQRFHPVDWKSLDWSGKA--VRAFLQDALEHGVGNQGFSI 117 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFK-KRSSAARNL 174 P+R + + I + + LE + +R + R L Sbjct: 118 PIRGPNGQFALFTANHSCSDAEWQNFIAKYGRDLILIAHYFNRKALEFEQNRRPDSPRAL 177 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE + L GY+ ++A L +S HT+ Y+ SA KL A+N AIA A+ G I Sbjct: 178 SPREIDAMTLLALGYSRAQVAHSLSISEHTLRVYIESARAKLGALNTTHAIATALSRGLI 237 >gi|114764851|ref|ZP_01444033.1| autoinducer-binding transcriptional regulator LuxR [Pelagibaca bermudensis HTCC2601] gi|114542737|gb|EAU45760.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. HTCC2601] Length = 223 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 15/230 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 L++L +++ + + + I + Y D Sbjct: 1 MQRLEDLQHITEQMRDCLGVDHLVYHWIGAQGAQ-------YGCGTYTPDWLARYVAQGY 53 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + P+ W+++ + + L G P+R + Sbjct: 54 LRVDPVIQGCFQRFHPVDWKALDWSSKAARA--FLKDALRHGLGNQGFTVPIRGPNGQFA 111 Query: 131 YVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQL 184 + E A + + LEL +S A L+ RE ++L Sbjct: 112 LFTVNHGCEDALWSSFIAQWRAELILAAHGINAKALELMPGPASQAPVALSPRELDAMRL 171 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + ++A +L +S HTV Y+ A KL A+N A+A+A+ G I Sbjct: 172 LASGLSRAQVAAELNISEHTVRVYIEGARFKLGALNTTHAVARAMSCGLI 221 >gi|260598411|ref|YP_003210982.1| DNA-binding transcriptional activator SdiA [Cronobacter turicensis z3032] gi|260217588|emb|CBA31841.1| Regulatory protein sdiA [Cronobacter turicensis z3032] Length = 241 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 19/245 (7%) Query: 2 SENTLTGKKSSSL-------QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL 54 S+ ++ ++ ++ L ++ + + + P + + Sbjct: 4 SDFFNWRREMTTRFQEIQDSGDIYSLLKTETQNME---YDYFALCVRHPVPFTRPKLTLH 60 Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 Y + D L N + P+ W E Sbjct: 61 TTYPEAWLEHYQAENYFVIDPVLKPANYLIGPLSWNDALFAGAAEE----LWNAARDHGL 116 Query: 115 FAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 G+ V G++ + M +E+ + Q + + L ++ Sbjct: 117 VKGVTQCVIAPNRAQGFLSVSGTSPRGHSMPDDELALRLQHLVEQSLVAMMRLEDPAATV 176 Query: 171 AR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L++RE LQ +G TS EIA L +S +TVN + + K +A N+ Q A Sbjct: 177 LEMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAA 236 Query: 230 RFGYI 234 G I Sbjct: 237 AIGLI 241 >gi|311105770|ref|YP_003978623.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760459|gb|ADP15908.1| bacterial regulatory protein, LuxR family protein 7 [Achromobacter xylosoxidans A8] Length = 237 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 14/238 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + LT ++S Q + ++ + + F+ P + +Y + Sbjct: 7 DLLLTTNSATSEQAVFTKVAAVAQEL---GFSYCAYGLRAALPFTNPQFVMISDYPIAWQ 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + D + H + +PI+W E + G + Sbjct: 64 ERYAQARYLEIDPTVKHCSRSSIPIVWSDRVFAETPE-----LWDEAQAVGLCVGWSQSN 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKR--SSAARNLTE 176 + G + + L++ ++ F ++ R + LT Sbjct: 119 LDAYGTGGMLTLARQKEQLSDAELLSKELRMRWLVTAAHLAFSKVLLPRFKLAPNVPLTR 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET L+ A DG TS +++E L ++ TV + +A KL A NR A+A+A G + Sbjct: 179 RETEILKWAADGKTSSDVSEILAIAESTVRFHTKNAISKLGARNRTAAVARAALLGLL 236 >gi|59940143|gb|AAX12610.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 89/231 (38%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + + LI + Y L ++ + + Sbjct: 14 TSVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTENNML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E + ++ + L GI+FP+ +NG Sbjct: 74 ACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + S+ LTERET CL Sbjct: 134 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243 >gi|170697389|ref|ZP_02888481.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137720|gb|EDT05956.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 228 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 15/234 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T ++ S ++ + + F + + P + + Y Sbjct: 3 TLSRALSFDDVFEIVAAQARALD---FEMCAYGARDPLPVTRPTFRTRNTYPESWQQRYL 59 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + P++W V + + G + P+R Sbjct: 60 EGNYFARDPVVRYGLIYTSPLVW------PVDACADEPFWEEAKAHGVAHGWSQPIRDKH 113 Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRSSAAR--NLTERETS 180 + +++ + + L ++A + T RE Sbjct: 114 GRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREKE 173 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ A DG T+ EIA L +S T+ ++ + KL++VN+ QAI KA+ G I Sbjct: 174 VLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227 >gi|95108205|emb|CAD17929.2| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 238 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 14/229 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S ++ + A F P + + L+NY Sbjct: 17 ASTSDVFEHIEAAA---LALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRARYLEAGYL 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + D + PI+W + V G A G Sbjct: 74 HVDPSVAQACRSQAPIVWSDRLFQDVPA-----LWDEAKAHGLRVGWAQSSLDSLGVGGM 128 Query: 132 VIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLA 185 + + L+ + E + L + + + NLT RE ++ Sbjct: 129 LSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYSDDNLTNREVEVMKWT 188 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A GY+ Sbjct: 189 ADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLGYL 237 >gi|59940069|gb|AAX12573.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + + LI + Y + ++ + + Sbjct: 14 TSVTDGNRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTENNML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E + ++ + L GI+FP+ +NG Sbjct: 74 ACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + S+ LTERET CL Sbjct: 134 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243 >gi|299069138|emb|CBJ40391.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum CMR15] Length = 238 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 75/228 (32%), Gaps = 14/228 (6%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 S ++ + A F P + + L+NY + Sbjct: 18 STSDVFEHIEAAA---LALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRVRYLEAGYLH 74 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + PI+W + V G A G + Sbjct: 75 VDPSVAQACRSQAPIVWSDRLFQDVPA-----LWDEAKAHGLRVGWAQSSLDSLGVGGML 129 Query: 133 IFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAG 186 + L+ + E + L + + +LT RE ++ Sbjct: 130 SLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYVDDSLTNREVEVMKWTA 189 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A GY+ Sbjct: 190 DGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLGYL 237 >gi|313110609|ref|ZP_07796491.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882993|gb|EFQ41587.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 226 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 75/232 (32%), Gaps = 14/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ +E + I F ++ + FP L NY + Sbjct: 2 SRITTEEEFFSLVLEI---CGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISE 58 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 T D + H P+IW + + G + PVR + Sbjct: 59 DYTSIDPIVRHGLLEYTPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGL 113 Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182 + +A I+E + F +L R LT RET L Sbjct: 114 ISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEML 173 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T EI L + TV ++ +A KL++ N+ +A KA G + Sbjct: 174 KWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 225 >gi|330828294|ref|YP_004391246.1| LuxR-like protein [Aeromonas veronii B565] gi|328803430|gb|AEB48629.1| LuxR-like protein [Aeromonas veronii B565] Length = 268 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 89/231 (38%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + + LI + Y L ++ + + Sbjct: 22 TSVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTENNML 81 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E + ++ + L GI+FP+ +NG Sbjct: 82 ACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHGAAGENG 141 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + S+ LTERET CL Sbjct: 142 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLF 200 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 201 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 251 >gi|222149185|ref|YP_002550142.1| transcriptional regulator protein [Agrobacterium vitis S4] gi|221736170|gb|ACM37133.1| transcriptional regulator protein [Agrobacterium vitis S4] Length = 243 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 79/229 (34%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 K++ +++ L +R +N L P +Q L ++ + + Sbjct: 15 QIKQTDTVKNLVDLTKHATSRYGVKNIVLGFPPEIGMLPSQQMQGILLADWPDEWSHLYF 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + D + H S +W + I + + G P+ Sbjct: 75 RDNLAFQDPAIRHIVSSEPSFVWSDFSKTLPISRDEKWLMDQAKEFFVSNGFTLPILSLD 134 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + V F + + + V LEL+ LT RE + Sbjct: 135 GRRAGVTFAGSDIDDSPQARTGMALIASLVFARALELYGANQKQTTRLTPREREVIGWIA 194 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G T EI+ G+S V ++G+ +KL AV+R AIA+A R IC Sbjct: 195 NGKTDWEISVIFGVSEKAVTKHVGNIMMKLGAVSRSHAIAEAFRQKLIC 243 >gi|332875591|ref|ZP_08443403.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] gi|332736164|gb|EGJ67179.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] Length = 238 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 75/224 (33%), Gaps = 12/224 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L + +R+ F + L+NY D Sbjct: 21 LFDIVKSTASRL---GFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVEGQYVKIDPT 77 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + H L P++W S +T E G A R G + Sbjct: 78 VQHCMVSLQPLVWSSQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLAR 134 Query: 137 EFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYT 190 L+ + + V + ++ A NL T RE L+ +G T Sbjct: 135 SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKT 194 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G + Sbjct: 195 SAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|169797684|ref|YP_001715477.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii AYE] gi|213155522|ref|YP_002317567.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|215485038|ref|YP_002327279.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|239503083|ref|ZP_04662393.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB900] gi|301348492|ref|ZP_07229233.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB056] gi|301513441|ref|ZP_07238678.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB058] gi|301597204|ref|ZP_07242212.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB059] gi|332853574|ref|ZP_08434826.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332869309|ref|ZP_08438707.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] gi|169150611|emb|CAM88520.1| putative Autoinducer-binding transcriptional regulator (LuxR family) [Acinetobacter baumannii AYE] gi|193076010|gb|ABO10598.2| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213054682|gb|ACJ39584.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|213987791|gb|ACJ58090.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|323516195|gb|ADX90576.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332728538|gb|EGJ59911.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332732817|gb|EGJ64032.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] Length = 238 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F + L+NY D + H L P++W Sbjct: 32 LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMVSLQPLVWS 91 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 S +T E G A R G + L+ + Sbjct: 92 SQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148 Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + V + ++ A NL T RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +L ++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|254438192|ref|ZP_05051686.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307] gi|198253638|gb|EDY77952.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307] Length = 256 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 82/236 (34%), Gaps = 15/236 (6%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 +T +++ L L + +++ + + +++ + Y L Sbjct: 9 LVTLDQATELSALQDTIVRLRDHYGVAHMVYHWVSADGEQ-------YGCGTYPLSWVQH 61 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D + P+ W+++ + + + G + P+R Sbjct: 62 YVQKDYLRIDPVIIGCFKQFHPVDWKALDWSSKAAVA--FRAEAMQAGVGNQGYSIPIRG 119 Query: 125 GFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178 + ++ + + LE+ KR + L+ RE Sbjct: 120 PSGQFALFSLSNNTDDTDWAAFTESNRRDLILCAHSFNQKALEVETKRMPDPVKPLSGRE 179 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY+ ++A+ L +S HT+ AY+ SA KL A N + A+A+A+ G I Sbjct: 180 IDVLTYLAMGYSRSQVAQTLTISEHTLRAYVESARFKLGASNTMHAVARAVSEGLI 235 >gi|260557627|ref|ZP_05829841.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] gi|260408800|gb|EEX02104.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] Length = 238 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 71/210 (33%), Gaps = 9/210 (4%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F + L+NY D + H + L P++W Sbjct: 32 LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMASLQPLVWS 91 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 S +T E G A R G + L+ + Sbjct: 92 SQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148 Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + V + ++ A NL T RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +L ++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|115360781|ref|YP_777918.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172065092|ref|YP_001815804.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115286109|gb|ABI91584.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] gi|171997334|gb|ACB68251.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 228 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 15/234 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T ++ S ++ + + F + + P + + Y Sbjct: 3 TLSRALSFDDVFEIVAAQARALD---FEMCAYGARDPLPVTRPTFRTRNTYPESWQQRYI 59 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + P++W V + + G + P+R Sbjct: 60 EGNYFARDPVVRYGLIYTSPLVW------PVDACADESFWEEAKAHGVAHGWSQPIRDKH 113 Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRSSAAR--NLTERETS 180 + +++ + + L ++A + T RE Sbjct: 114 GRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREKE 173 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ A DG T+ EIA L +S T+ ++ + KL++VN+ QAI KA+ G I Sbjct: 174 VLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227 >gi|15597095|ref|NP_250589.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAO1] gi|116049852|ref|YP_791341.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892145|ref|YP_002441012.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58] gi|254234991|ref|ZP_04928314.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719] gi|254240292|ref|ZP_04933614.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192] gi|6014709|gb|AAF01471.1|AF190630_1 PhzR [Pseudomonas aeruginosa PAO1] gi|9947891|gb|AAG05287.1|AE004616_1 quorum-sensing control repressor [Pseudomonas aeruginosa PAO1] gi|115585073|gb|ABJ11088.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166922|gb|EAZ52433.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719] gi|126193670|gb|EAZ57733.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192] gi|218772371|emb|CAW28153.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58] Length = 237 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 75/232 (32%), Gaps = 14/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ +E + I F ++ + FP L NY + Sbjct: 13 SRITTEEEFFSLVLEI---CGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISE 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 T D + H P+IW + + G + PVR + Sbjct: 70 DYTSIDPIVRHGLLEYTPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGL 124 Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182 + +A I+E + F +L R LT RET L Sbjct: 125 ISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEML 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T EI L + TV ++ +A KL++ N+ +A KA G + Sbjct: 185 KWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236 >gi|146312149|ref|YP_001177223.1| DNA-binding transcriptional activator SdiA [Enterobacter sp. 638] gi|145319025|gb|ABP61172.1| transcriptional activator SdiA [Enterobacter sp. 638] Length = 240 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ S E+ +Q + +A F Y++ P + I +Y + Sbjct: 14 FLRFQEMGSADEVY---EELQRQTQALEFDYYSLCVRHPVPFTRPKISIHSSYPAEWISQ 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L + + + + Q GI + L Sbjct: 71 YQSENYYAIDPVLKR-----ENFLQGHLPWTDALFADAQALWDGARDHGLRKGITQCLML 125 Query: 125 GFHKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERET 179 H G++ + +M ++E+ + +T L + ++RE Sbjct: 126 PNHALGFLSVSRTSQFGKMMDSDEIELRLQVLVQMALTTLLRFEHEMVMPPEMKFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G+I Sbjct: 186 EILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGFI 240 >gi|46370360|gb|AAS89968.1| transcriptional regulator [Agrobacterium vitis] Length = 230 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 87/220 (39%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + A+ F + + SA + N+ D ++ Sbjct: 12 DVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGS--SVITNWPADFLSEYDMASLLSSSP 69 Query: 76 FLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + +P+++ + + +L+ L G FPV G V Sbjct: 70 MFNRLRNTSIPVVFDIHVVARERDPKTVELATDLFLRFGMPRGACFPVHDAHGNRGAVNI 129 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E + ++ H V E+ + + LTERE CL G TS EI Sbjct: 130 CGEMPAFSFVDMVLLHYLAGHVFNRLAEIRELDARVTETLTEREIECLTWTAAGKTSVEI 189 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE +GLS HT+N YL AT KLD VNR QA+AKA+R I Sbjct: 190 AEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229 >gi|262196287|ref|YP_003267496.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079634|gb|ACY15603.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM 14365] Length = 254 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 77/228 (33%), Gaps = 8/228 (3%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L F + L+ Y D Y D Sbjct: 25 EHAQSILQDTLATYGFDFFCFAIYGAPRGAIAIDNYHLLLNAYPNAWADRYYEKHYWYSD 84 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L H PI W ++Q + +S + +R +G+ VR + G + Sbjct: 85 PVLAHCGRSPTPIDWTTVQNQPAQPASAEQVMREAHEHDLCSGVTVTVRDVSGRLGILSL 144 Query: 135 TSEF------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAG 186 + I A ++ F R + L+ERE CL+ Sbjct: 145 ATRDVYSAELRDRIRHAIPIAQFVLSHLVEKLEAHFHVRLEDLQRYKLSERERECLRWVA 204 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI LG++ T +L +A KL AVNR A+A+A++ G I Sbjct: 205 AGKTSWEIGHILGIAERTAIFHLNNAMKKLGAVNRSHAVARALQHGVI 252 >gi|260773944|ref|ZP_05882859.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] gi|260610905|gb|EEX36109.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] Length = 240 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 82/230 (35%), Gaps = 13/230 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S Q L P L + + I+ + +L NY L + Sbjct: 14 IDSFQALQPTLAKMNHLIEHE---YFLFGLSLQTTLTSNDTLIADNYPLAWRQQYDESQF 70 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + + + LPI W I+ Q+ G + PV + G Sbjct: 71 MLIDPIVRYSMTNFLPIRWSEIRAHHQDS---QIIFEEARLNGLKEGFSIPVHGLRGEFG 127 Query: 131 YVIFTSEFLM------LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + F + A + Q I + + + A LT RE CL Sbjct: 128 MLSFATSDTRHYDLNLPAIQASQLLVPLLAQNIDNIVRCHRDAKPRAE-LTCREGQCLSW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G ++ EIA+ + S TV +L +A KL A NR QAI KAI GYI Sbjct: 187 AAEGKSAWEIAQIINTSERTVKFHLSNACKKLGATNRYQAITKAILGGYI 236 >gi|86138963|ref|ZP_01057534.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. MED193] gi|85824194|gb|EAQ44398.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. MED193] Length = 255 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 17/229 (7%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 +L+ L + I + + ++SA D Y T Sbjct: 35 TLEGLQSIIECICKVFAIDHAMYHWVDSAGDH-------YYFGTYSEAWTQQYQEKNYTR 87 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGY 131 D + P+ W+ + + + G + P+R + Sbjct: 88 IDPVVIGCYQRFHPVDWRRLDWSSKP---AREFFDAAMEHGVGNQGYSIPIRGPNGQFAL 144 Query: 132 VIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185 + A + + + LE R+ A+ L+ RE L L Sbjct: 145 FSVSHHCDDAAWDKFCDQNSRDLILIGHYFNRKALEFEPDRAPEQAQPLSPRELDALTLL 204 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G GY+ ++A+ L +S HT+ Y+ SA KL A+N AIA+A+ G I Sbjct: 205 GIGYSRAQVAQTLSISEHTLRVYIESARFKLGALNTTHAIARAVSCGLI 253 >gi|86356503|ref|YP_468395.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280605|gb|ABC89668.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 83/220 (37%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ L + ++R F + + + + ++ + + + Sbjct: 30 DIFRFLKRVTEAYRSRAFMVLNLPPTTSLDLQGS--TVITSWPAELLALYDQEALMVNSP 87 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + +E + + L L G FP G V F Sbjct: 88 VLRRLRTSTRPFFYDMTRETWSRDDGKSVLVTGLFERFRMMRGAYFPTHEASGLRGAVSF 147 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + +LT+RE CL G TS EI Sbjct: 148 AGDREPFSAAEMRELCYIAIHVFDRLAEIRNLDTRMTDSLTDREIDCLNWTAAGKTSAEI 207 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 208 AEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 247 >gi|166798330|gb|ABY89693.1| transcriptional regulator [Mesorhizobium loti] Length = 243 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 2/230 (0%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + +++ + RL I T+ +Q+ L ++ + + Sbjct: 13 QLQHAATAAAVCERLLGITADFGLTALMAGTVPQPGTPAGQQKQHVLLCDWPGEWLERYV 72 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + H P W+ + I+ S + G G+AFP+ Sbjct: 73 ARNYVDHDPVVSHMKQLQAPFQWREASQSIRIDKSSGEVMGDAGAFKLRDGLAFPLVTLD 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQL 184 + V E + L+ + + ++L S + + LT RE CLQ Sbjct: 133 GQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMASKSIDHIVLTPRERECLQW 192 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|254485722|ref|ZP_05098927.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. GAI101] gi|214042591|gb|EEB83229.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. GAI101] Length = 239 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 29/239 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +K+ +L L ++ + + + ++SA D Y + Sbjct: 15 EKTDTLDGLQTATEALRTFLGVAHIVYHWVDSAGDQ-------YGCGTYSPEWRSRYLDQ 67 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESS------------GQLSVRLEGGLLPFA 116 D + P+ W+ + + + +V + G FA Sbjct: 68 NYLRVDPVVSGCFQRFHPVDWKRLDWSSKAARALLTEAIDHGVGNQGFTVPIRGPNGQFA 127 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLT 175 F V + + FT ++I+ AH + LE R+ A+ L+ Sbjct: 128 --LFTVNDNCTDDAWQAFTQANR---RDLILIAHYFNQKA----LEFEPGRTPEVAQALS 178 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L GY ++A+ L +S HT+ Y+ SA KL A+N A+A+A+ G I Sbjct: 179 PREIDAMTLLAIGYNRAQVADSLSISEHTLRVYIESARFKLGAMNTTHAVARALSRGLI 237 >gi|163738954|ref|ZP_02146367.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis BS107] gi|163741802|ref|ZP_02149192.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis 2.10] gi|161384975|gb|EDQ09354.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis 2.10] gi|161387759|gb|EDQ12115.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis BS107] Length = 239 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 15/229 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ L + + + + + ++SA D Y + Sbjct: 18 TSVDGLQEIIQRVCDTFDVDHAMYHWVDSAGDH-------YHFGTYSQGWVERYQEKAYV 70 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + P+ W+ + + + + G + P+R + Sbjct: 71 RVDPVIIGCYQRFHPVDWRRLDWSSKPAR--EFLQDALAHDVGNQGYSIPIRGPNGQFAL 128 Query: 132 VIFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLA 185 + + + LE RS + L+ RE L L Sbjct: 129 FTVSHNCDDDTWTRFTDKHSRDLILIGHYFNRKALEFEPDRSPEHVQPLSPREIDALTLL 188 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+ ++A+ L +S HT+ Y+ SA KL A+N AIA+A+ G I Sbjct: 189 AMGYSRAQVAKTLTISEHTLRVYIESARFKLGAINTTHAIARALSLGLI 237 >gi|12620586|gb|AAG60862.1|AF322012_167 ID375 [Bradyrhizobium japonicum] Length = 261 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 11/233 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPNIL 68 ++ S+ L L + A ++ + + + L N+ D Sbjct: 32 QTRSIAALFDLLVNFASNEGFDKVAYGALSCSNERRLPEYLPPPPTINFPSDWCQRYAEQ 91 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + P +W + ++ +R G++ P+ + Sbjct: 92 EYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLKHGMSVPLFGSQGR 151 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSC 181 + +V F S F + + + + + + LT RET C Sbjct: 152 SAFVSFASPFDDADPQDRMAHLTTLASAFHNAVA---QITPPLDESCETDIPLTPRETEC 208 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G ++ I + + ++ +TVN ++ + KL A NR A+AKA R G I Sbjct: 209 LYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 261 >gi|222147695|ref|YP_002548652.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221734683|gb|ACM35646.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 230 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + A+ F + + SA + N+ D ++ Sbjct: 12 DVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGS--SVITNWPADFLSEYDMASLLSSSP 69 Query: 76 FLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + +P+++ + + +L+ L G FPV G V Sbjct: 70 MFNRLRNTSIPVVFDVHVVARERDPKTVELATDLFLRFGMPRGACFPVHDAHGNRGAVNI 129 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E + ++ V E+ + + LTERE CL G TS EI Sbjct: 130 CGEMPAFSFVDMVLLQYLAGHVFNRLAEIRELDARVTETLTEREIECLTWTAAGKTSVEI 189 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE +GLS HT+N YL AT KLD VNR QA+AKA+R I Sbjct: 190 AEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229 >gi|260461917|ref|ZP_05810162.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259032164|gb|EEW33430.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 243 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 91/230 (39%), Gaps = 2/230 (0%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + + + + +L I + T+ +Q+ L ++ ++ + Sbjct: 13 QLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPAGQQKQHVLLCDWPVEWLERYV 72 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + H P W+ ++ I+ S + G G+AFP+ Sbjct: 73 ARNYVDHDPVVSHMKQLQAPFQWREAAQDIRIDKSSGEVMGDAGAFKLRDGLAFPLITLD 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184 + V E + L+ + ++L + LT RE CLQ Sbjct: 133 GQIVMVSLGGEAVELSAAEFGLVSLVSTYAVGRAMQLHTMSGNTIDHVELTPRERECLQW 192 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|325124101|gb|ADY83624.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Acinetobacter calcoaceticus PHEA-2] Length = 238 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 72/210 (34%), Gaps = 9/210 (4%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F + L+NY D + H L P++W Sbjct: 32 LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYMEQQYVKIDPTVQHCMVSLQPLVWS 91 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 S +T + G A R G + L+ + Sbjct: 92 SQFAKTQ---EEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148 Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + V + ++ + A NL T RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMYWLSQTVHSSIAKVVNEVEFAQFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +LG++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|319785576|ref|YP_004145052.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171464|gb|ADV15002.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 243 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 2/230 (0%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + +++ + RL I + T+ +Q+ L ++ + + Sbjct: 13 QLQHAATAAAVCERLLGITSDFGLTALMAGTVPQPGTPAGQQKQHVLLCDWPGEWLERYV 72 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + H P W + I+ S + G G+AFP+ Sbjct: 73 ARNYVDHDPVVSHMKQLQAPFQWHEASQGIRIDKSSGEVMGDAGAFKLRDGLAFPLITLD 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQL 184 + V E + L+ + + ++L + + LT RE CLQ Sbjct: 133 GQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMANRTIDHIVLTPRERECLQW 192 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|239820479|ref|YP_002947664.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239805332|gb|ACS22398.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 235 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 70/229 (30%), Gaps = 9/229 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + E S L + + F P + YD Sbjct: 11 RLDEASEPSQVLAQVSVAARQLGFEHCAYGLRTLVPFTRPKTLMFSTYDERWSRRYISAG 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + H P+IW + + G A V + Sbjct: 71 YLQVDPTVAHGVHSGTPVIWSNEVFRDAPQ-----MWDEARSFGLRVGWAQSVFEPDARV 125 Query: 130 GYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G + L + + G + F L + LT+R+ L+ Sbjct: 126 GMLSLARSSEPLTAAEMRAKDLLFQGLVNKAHRAFCRLLGGPLAGIEPLTKRQVEVLRWT 185 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GDG TS+EIA L +S TV+ +L +A +L A + A A A R G + Sbjct: 186 GDGKTSDEIAAILCISKPTVDFHLRNAMARLGASTKSSAAAFASRLGLL 234 >gi|240142370|ref|YP_002966880.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] gi|240012314|gb|ACS43539.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] Length = 242 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 1/220 (0%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 + H ++ + F + I + R + + + Y D Sbjct: 21 DHDQVAHSVERILAEFGFEHFVITGLPNPNDRLDQVLLIRRLPAGWFEHYARHNYMYLDP 80 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + P W + E ++ G + P+ + Sbjct: 81 VFRNCRATTSPFDWGEAPYDPETEPGAIEVMQRATDFGMARGFSVPIHGPEGCEACFSMS 140 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEI 194 L H ++ ++ + + LT+RE L A G +S + Sbjct: 141 GRNPDLTGRTKPAVHMIAMYAFERARQVGRRPAKPPSNPLTQREQEVLTWAALGKSSRDT 200 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE + ++ T A+ +AT KL A NR QA+ +A++ +I Sbjct: 201 AEIMQITERTALAHAVNATHKLGAANRTQAVVRAMQSKFI 240 >gi|167590019|ref|ZP_02382407.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 233 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 14/234 (5%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + + S + ++ + F +P + I L N+ + Sbjct: 7 DLESTRSEHDAYEKIAAAVREV---GFEYSAYYLHTPWPLSRPKIYMLTNFPEAWQQRYH 63 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + H PIIW E + G + Sbjct: 64 AARYVDVDPVIRHARQSYAPIIWSDAVFE-----ETPHLWQEAQAHGLRYGYSLAAVSNC 118 Query: 127 HKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSA--ARNLTERETS 180 G + L + ++ + S A LT RE Sbjct: 119 GVAGMMSMARSHGPLTRRELQQQELKMRWLVNAAHLAITRAVLPKLSPDNAIELTAREVE 178 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ DG T+ EI+ + +SV+TVN ++ +A KL N A+A+A G + Sbjct: 179 VLKWVADGKTASEISMIMLISVYTVNFHVKNAVTKLKTSNTTAAVARAAMLGLL 232 >gi|238027274|ref|YP_002911505.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876468|gb|ACR28801.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 237 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 74/230 (32%), Gaps = 14/230 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +SS +E+S + N + + + +P + I L NY Sbjct: 15 ASSEREISILIEGAANHL---GYEFCGYGLRIPWPVSRPKIYLLSNYPEAWKQRYMEAGY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H P++W E R G + +G Sbjct: 72 IDIDPTMKHMRRFQTPVVWTDAFFSRTPE-----LWRDAQAHGLRHGWSQSTFDSCGVSG 126 Query: 131 YVIFTSEFLMLANEVI----IEAHGACYQVITDFLE-LFKKRSSAARN-LTERETSCLQL 184 + + + L K LT+RE L+ Sbjct: 127 MLTLARSTGPVTPAELERNEFRMRWLVSTTHLAMTRVLMPKLMPDTERGLTDREVEVLKW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG TS EI+ L +SV TVN ++ +A KL VN+ A+ +A G + Sbjct: 187 AADGKTSGEISTILRISVDTVNFHVKNAVAKLKTVNKTSAVVRAAMLGLL 236 >gi|12620899|gb|AAG61129.1|AF330018_1 AHL receptor [Burkholderia cepacia ATCC 25416] gi|17939926|emb|CAD19536.1| CepR protein [Burkholderia cepacia] gi|288551614|gb|ADC53303.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMAHYQAH 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDVDQIEPC-----PLWQDARDFGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S A LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|107025997|ref|YP_623508.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692818|ref|YP_838351.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737931|ref|YP_001779191.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105895371|gb|ABF78535.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650818|gb|ABK11458.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169820119|gb|ACA94701.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMAHYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S A LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|307824873|ref|ZP_07655096.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307734231|gb|EFO05085.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 236 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 73/238 (30%), Gaps = 13/238 (5%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 + S+Q I + K F + P +NY Sbjct: 5 QETQLQALQSIQCAHQLFQTILSFSKELGFDHCAYGLRMPLPLTNPKTLMFNNYPTAWQA 64 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 D + H LLPIIW + G A R Sbjct: 65 QYQAKNYLAIDPTVQHAMRSLLPIIWTDDLFSPASD-----LWEEACSFGLRVGWAQSSR 119 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTE 176 G + + E+ ++A+ +T L R + L+ Sbjct: 120 DFNGFVGMLTLARSNEPIT-EIELDANKFKMAWLTQVAHLGMSRCLTPKLMQEVNVTLSN 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ DG TS EI+ L ++ TVN ++ + KL+A N+ A KA G + Sbjct: 179 REIEVLRWTADGKTSSEISCILNIAERTVNFHINNVVTKLNAANKTSATIKAAMLGLL 236 >gi|293611186|ref|ZP_06693484.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826437|gb|EFF84804.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 238 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 9/210 (4%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F + L+NY D + H L P++W Sbjct: 32 LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYLEQHYVKIDPTVQHCMVSLQPLVWS 91 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 S ++ + G A R G + L+ + Sbjct: 92 S---QSAKTQEEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSSDQLSEKEQKAQY 148 Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + V + ++ + A NL T RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMYWLSQTVHSSIAKVVNEMEFAQFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +LG++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|14586756|gb|AAK70350.1|AF333005_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia stabilis] Length = 239 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 68/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMARYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDVDRSDP-----GPLWQDAREFGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S A LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINILTLQTNWLASLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|27376991|ref|NP_768520.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350133|dbj|BAC47145.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 5/230 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPNIL 68 ++ S+ L L + A ++ + + + L N+ D Sbjct: 24 QTRSIAALFDLLVNFASNEGFDKVAYGALSCSNERRLPEYLPPPPTINFPSDWCQRYAEQ 83 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + P +W + ++ +R G++ P+ + Sbjct: 84 EYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLKHGMSVPLFGSQGR 143 Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + +V F S F + + A + + + LT RET CL Sbjct: 144 SAFVSFASPFDDADPQDRMAHLTTLASAFHNAVAQITPPLDESCETDIPLTPRETECLYW 203 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ I + + ++ +TVN ++ + KL A NR A+AKA R G I Sbjct: 204 VAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 253 >gi|13625780|gb|AAK35156.1|AF296284_2 transcriptional activator BviR [Burkholderia cepacia] gi|116878313|gb|ABK32010.1| transcriptional regulator [Burkholderia vietnamiensis] gi|116878322|gb|ABK32016.1| transcriptional regulator [Burkholderia vietnamiensis] Length = 237 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 16/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ ++A F + + P + NY + Sbjct: 15 AKSEADVFLEFSA---DVRALGFDHCSFGLRIPLPISKPQFMLQSNYPQTWVERYVSQNY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H S + P+IW++ + ++ G G P G Sbjct: 72 FAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEAGQHGLRHGWCMPSVSRTGAIG 126 Query: 131 YVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + + E ++ L L + LT RE LQ Sbjct: 127 LITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVPEYTVELTVREREALQ 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T EI + + + TV +L +A KL+A N+ +A KA G + Sbjct: 186 WSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236 >gi|218463393|ref|ZP_03503484.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 245 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 80/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ L + + R F + + + L ++ + + + Sbjct: 27 DIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGS--TVLTSWPAELLALYDQEGLMVDSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + L V L FP G V F Sbjct: 85 VLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPTHEASGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LTERE CL G TS EI Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTEREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|13507195|gb|AAK28504.1| MupR [Pseudomonas fluorescens] Length = 234 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 15/230 (6%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 +L+ S L + + L+ + + P I + NY I + Sbjct: 10 TLEAWSKVLFALAKEYGFSS-VLFGVKPTISTPFSSSTI--ISNYSRSWRSIYDANAYYE 66 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D +FH + LP++W E I Q +G+ P+ + G + Sbjct: 67 VDPVVFHCLNSSLPLVWTK---ENFINKPEQQLYEAASASGVCSGLCMPIHGPRGEFGML 123 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFL--------ELFKKRSSAARNLTERETSCLQL 184 F ++ +VI + ++ D+L +K LT RE CL+ Sbjct: 124 NFITDEKSP-ADVIRSKGLPQFALMRDYLIESFQKIQSAAEKEVEKPPKLTARELECLKW 182 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI+ L + TVN ++ + K +A +R A+ IR G + Sbjct: 183 VAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232 >gi|110678944|ref|YP_681951.1| transcriptional activator protein RaiR, putative [Roseobacter denitrificans OCh 114] gi|109455060|gb|ABG31265.1| Transcriptional activator protein RaiR, putative [Roseobacter denitrificans OCh 114] Length = 239 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 15/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ +L+ ++ + ++ + + ++SA + Y L+ Sbjct: 15 EQADTLEGINEAIFTLRGHFGVEHMVYHWVDSAGEQ-------YGYGTYSLEWAARYQEQ 67 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + P+ W+ + + + + G L G + P+R + Sbjct: 68 NYIRVDPVVIGCYQRFHPVDWKRLDWSSKAARALRAEAATYG--LGNQGYSIPIRGPNGQ 125 Query: 129 NGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCL 182 + E E + LE ++ ++ L+ RE + Sbjct: 126 FALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQKALEFEPNKTPEQSQALSPREIDAM 185 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++AE L +S HT+ Y+ SA KL A N A+A+A+ G I Sbjct: 186 TLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAVARALSRGLI 237 >gi|12620907|gb|AAG61133.1|AF330022_1 AHL receptor [Burkholderia vietnamiensis] Length = 239 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 13/233 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAR 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + G+A Sbjct: 70 NYIEIDSTVREGALSTNMIVWPDVDRIDPC-----PLWEDARDFGLAVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSC 181 G + + L I + +++ F+ L K +A LT RE Sbjct: 125 FGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-LPKLSPAAGVTLTAREREV 183 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 184 LCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|327188113|gb|EGE55336.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 245 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQG--NTVITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L V L FP G V F Sbjct: 85 VLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|59940141|gb|AAX12609.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 88/231 (38%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S + + LI + Y L ++ + + Sbjct: 14 NSSADGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTENNML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E + ++ + L GI+FP+ +NG Sbjct: 74 ACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + S+ LTERET CL Sbjct: 134 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKEVSTGLL 243 >gi|115358865|ref|YP_776003.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|13508495|gb|AAK27306.1| AHL receptor [Burkholderia ambifaria] gi|115284153|gb|ABI89669.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 239 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 70/232 (30%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGAMSTNMIVWPDVDRIDPC-----PLWQDARDYGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S + LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPESSVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 RWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236 >gi|152985537|ref|YP_001348746.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960695|gb|ABR82720.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 237 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 74/232 (31%), Gaps = 14/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ +E I F ++ + FP L NY + Sbjct: 13 SRITTEEEFFSLALEI---CGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISE 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 T D + H +P+IW + + G + PVR + Sbjct: 70 DYTSIDPIVRHGLLEYMPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGL 124 Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182 +A I+E + F +L R LT RET L Sbjct: 125 ISMFSLVRSAESIAAAEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEML 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T EI L + TV ++ +A KL++ N+ +A KA G + Sbjct: 185 KWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236 >gi|14586754|gb|AAK70349.1|AF333004_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans ATCC BAA-247] Length = 239 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMAHYQAH 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDVDQIAPC-----PLWQDARDFGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S A LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|294340032|emb|CAZ88396.1| autoinducer-binding transcriptional regulator LuxR family [Thiomonas sp. 3As] Length = 237 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 11/221 (4%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 ++ + + + F + + P + + L NY + D + H Sbjct: 21 LFEIVVSMVHSLGFDHCSYGLRMPLPVSRPKVVLLTNYPRAWENRYTEKGYLAVDPTVRH 80 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 L P++W + + G A R G + + Sbjct: 81 GTHSLQPVVWSDAFFAS-----SRDLWEEARSFGLCVGWAQSSRDVNSTMGLLSVSRSGE 135 Query: 140 MLANEVIIE----AHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEE 193 ++ + + V + + A LT+RE L+ DG T+ E Sbjct: 136 PISEIELRDKEMQLAWLTQMVHLGMSRILTAKLMPAVTAPLTDREIEVLRWTADGKTASE 195 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA+ L +S T N ++ +A KL A N+ A+ +A G + Sbjct: 196 IADILNISERTANFHIANAIAKLHAPNKTAAVIRAGMLGML 236 >gi|170745593|ref|YP_001776815.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170752150|ref|YP_001783296.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170659247|gb|ACB28299.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] gi|170659277|gb|ACB28328.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 248 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 87/233 (37%), Gaps = 11/233 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLIC-ELHNYDLDSGDIPNI 67 +++S+ ++ ++ + ++ I P C + + + G Sbjct: 19 RRASTDVDVYS---ELRRSGAIFGYDVFLIAGLPRAPHENLYDCSLISGWPPEWGRRYQE 75 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D + H P +WQ + + G + + G P Sbjct: 76 RRHMHVDPVIRHIRGTTDPFLWQEAVDAQ-VTPEGMVVMEEARAFSLNEGFCVPFHQIDG 134 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSC 181 V F E + L+ + H ++ + ++R + LT RE C Sbjct: 135 TEAGVSFGGEQVRLSQDERAALHLVAIYAMSTAKAIARRRGLSEDDGTPPSPLTGREAEC 194 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + G ++ EI L +S TV +LGSA KL++V R QA+A+A+R I Sbjct: 195 LKWSSTGKSAWEIGVILSISTRTVEHHLGSAVRKLNSVTRTQAVAEALRRHII 247 >gi|218661906|ref|ZP_03517836.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 245 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 80/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ L + + R F + + + L ++ + + + Sbjct: 27 DIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGS--TVLTSWPAELLALYDQEGLMVDSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + L V L FP G V F Sbjct: 85 VLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPTHEASGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|222106725|ref|YP_002547516.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] gi|221737904|gb|ACM38800.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] Length = 307 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 85/237 (35%), Gaps = 16/237 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSA-LDFPRRQQLICELHNYDLDSGDIPNIL 68 + S E+ + + + F+ + + + L+ + ++NY + + Sbjct: 54 AAVSAAEMKAVMESSIKSLGYKYFSYHILQTPVLNATNETRHTFGINNYPEEWVERYASE 113 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 Y D + S P W + + + + G+ P+ + Sbjct: 114 RYVYCDPIVGISLSRKTPFRWSDAIDSDKLTEEERCVIEDAAKRGIVNGLTVPLMSRHGE 173 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAARNLTER 177 + + + + EAH V+ + L +R L+ R Sbjct: 174 LAIMTVIPDEKF--QDSLPEAHLIHIISQFFHSCALPVVMEEHLIGSYRR--RRSFLSAR 229 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + G +S EIA+ LG+S +V Y+ S KL+AVNR QA+ KAI G I Sbjct: 230 EKETVIWVSKGKSSWEIAKILGISEKSVEFYMESVKRKLEAVNRTQAVVKAIMLGLI 286 >gi|13474692|ref|NP_106261.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025447|dbj|BAB52047.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 243 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 2/230 (0%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + + + + +L I + T+ +Q+ L ++ ++ + Sbjct: 13 QLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLLCDWPVEWLERYV 72 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + H P W+ + + S + G G+AFP+ Sbjct: 73 ARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKLRDGLAFPLITLD 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184 + V E + L+ + ++L + LT RE CLQ Sbjct: 133 GQIVMVSLGGEAMQLSAAEFGLVSLVSTYAVGRAMQLHTMATKTIDHIELTPRERECLQW 192 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|209548111|ref|YP_002280028.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533867|gb|ACI53802.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ L + ++R F + + + + ++ + + + Sbjct: 26 DIFRFLKRVTEAYRSRAFLVLNLPPITSLDIQGS--TVITSWPAELLALYDQEGLLVNSP 83 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + +E + + L L G FP G + F Sbjct: 84 VLRRLRTSARPFFYDMSRENWSRDDGKSILVASLFERFRMMRGAYFPTHEPSGVRGAISF 143 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 144 AGDREPFSPAEMRELCYISIHVYDRLAEIRNLDTRITDTLTDREIDCLNWTAAGKTSAEI 203 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 204 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|66277254|gb|AAY44558.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 9/211 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + Y L ++ + + + D + LPI W Sbjct: 34 GYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTLNNMLACDPIIQLARRQTLPIYWNR 93 Query: 92 IQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 + E ++ + L GI+FP+ +NG + F + ++++++E Sbjct: 94 LDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT-RERASSDLMLESS 152 Query: 149 --AHGACYQVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + + + + + LTERET CL A +G TS EIA LG++ Sbjct: 153 PILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERETECLFWASEGKTSGEIACILGITER 212 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN +L T K ++NR QAIAK + G + Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|190890568|ref|YP_001977110.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695847|gb|ACE89932.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 246 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + ++ + + + Sbjct: 28 DIFRFMKRMTEAYRCRAFMVLNLPPITSLDLQG--NTVITSWPAELLALYDQEGLMVNSP 85 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L V L FP G V F Sbjct: 86 ILRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 145 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 146 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 206 AEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 245 >gi|262281348|ref|ZP_06059129.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] gi|262257174|gb|EEY75911.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] Length = 238 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 9/210 (4%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F + L+NY D + H L P++W Sbjct: 32 LGFDYCAYGMQAPLSIAEPKTIMLNNYPEAWQKRYVKQQYVVVDPTVQHCMLSLQPLVWS 91 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 S ++ S + G A R G + L+ + Sbjct: 92 S---QSANTQSQKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSTDQLSEKEQKAQY 148 Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + V + ++ A NL T RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMYWLSQTVHSSIAKIVNDAEFAQFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +L ++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLCNSMQKLNVNNKISAAIRAVMLGIL 238 >gi|330820206|ref|YP_004349068.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] gi|327372201|gb|AEA63556.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] Length = 240 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 73/231 (31%), Gaps = 14/231 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ Q+L ++ R+ F + P Q ++ Y Sbjct: 15 AAANEQQLFQQISAYSKRL---GFEYCCYGIRVPQPGTQPVVEIFDTYPAGWMAHYQARN 71 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + IIW + R G+A Sbjct: 72 YIEVDPTVRDGAMSPNMIIWPDVDTAEDPS-----LWRDARDFGMSVGVAQSAWAARGVF 126 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQ 183 G + L I + L K +A+ LT+RE L Sbjct: 127 GLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGKFLVPKLSPAASVTLTKREREVLS 186 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI E+L +S TV ++ + KL A N++QA+ KAI G I Sbjct: 187 WTSEGRTASEIGEQLNISERTVTFHINNILAKLGATNKVQAVVKAIGMGLI 237 >gi|218508993|ref|ZP_03506871.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 245 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQG--NTVITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L V L FP G V F Sbjct: 85 VLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|116878316|gb|ABK32012.1| transcriptional regulator [Burkholderia vietnamiensis] gi|116878319|gb|ABK32014.1| transcriptional regulator [Burkholderia vietnamiensis] Length = 237 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 16/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ ++A F + + P + NY + Sbjct: 15 AKSEADVFLEFSA---DVRALGFDHCSFGLRIPLPISKPQFMLQSNYPQTWVERYVSQNY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H S + P+IW++ + ++ G P G Sbjct: 72 FAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEADQHGLRHGWCMPSVSRTGAIG 126 Query: 131 YVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + + E ++ L L + LT RE LQ Sbjct: 127 LITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVPEYTVELTVREREALQ 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T EI + + + TV +L +A KL+A N+ +A KA G + Sbjct: 186 WSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236 >gi|171322367|ref|ZP_02911189.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171092309|gb|EDT37680.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 239 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S + LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIAAGLI 236 >gi|12620903|gb|AAG61131.1|AF330020_1 AHL receptor [Burkholderia cepacia] Length = 239 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMAHYQAR 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S A LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|218673534|ref|ZP_03523203.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 245 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGS--TVITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + L V L FP G V F Sbjct: 85 VLRRLRTSARPFFYDMSRQNWPRDDGKSALVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRITDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|7385149|gb|AAF61719.1|AF232769_1 acylhomoserine lactone dependent transcriptional regulator [Pseudomonas fluorescens] Length = 241 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 72/230 (31%), Gaps = 10/230 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + LQE + L++ ++ F Y P + +Y + Sbjct: 17 EMLKLQESAQVFALLEREVQYLGFDFYAYGIRHSIPFTRPKTEIYGSYPQPWMERYQQQN 76 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + ++W + G + G P+R Sbjct: 77 YAAIDPSILNGLRSTEMVVWNDVLF-----GKGSVLWGEAQDWGLRVGATVPIRTPDGAL 131 Query: 130 GYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQL 184 + ++ + EL + S + L+ RE LQ Sbjct: 132 SVLSVARRNTAISAVEREVIRLRLRCIIELAAGRLSELGHSNTQSDPQELSAREREILQW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S EIA LG+SV+TVN +L K A N+ A A A G I Sbjct: 192 TADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLGLI 241 >gi|194468906|ref|ZP_03074890.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455270|gb|EDX44109.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 240 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 77/235 (32%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ F+ L ++ EV + + ++ L + ++RE Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|49081930|gb|AAT50365.1| PA1898 [synthetic construct] Length = 238 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 75/232 (32%), Gaps = 14/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ +E + I F ++ + FP L NY + Sbjct: 13 SRITTEEEFFSLVLEI---CGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISE 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 T D + H P+IW + + G + PVR + Sbjct: 70 DYTSIDPIVRHGLLEYTPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGL 124 Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182 + +A I+E + F +L R LT RET L Sbjct: 125 ISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEML 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T EI L + TV ++ +A KL++ N+ +A KA G + Sbjct: 185 KWTAVGKTYGEIGLILSIDQRTVKFHIVNAVRKLNSSNKAEATMKAYAIGLL 236 >gi|205352355|ref|YP_002226156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272136|emb|CAR36989.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627405|gb|EGE33748.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 240 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EEQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ F+ L ++ EV + + ++ + ++RE Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|254254249|ref|ZP_04947566.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] gi|12620909|gb|AAG61134.1|AF330023_1 AHL receptor [Burkholderia cepacia] gi|124898894|gb|EAY70737.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] Length = 239 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 67/229 (29%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ ++ I K F + P + + Y Sbjct: 13 SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAKNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + I+W + + R G+A G Sbjct: 73 DIDSTVRDGALSTNMIVWPDVD-----GADSSPLWRDAREFGLSVGVAQSSWAARGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185 + L I + + + S + LT RE L Sbjct: 128 LSIARRADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEASVTLTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 188 AEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|116250693|ref|YP_766531.1| LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255341|emb|CAK06416.1| putative LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 245 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + ++R F + + F + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGS--TVITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L L FP G V F Sbjct: 85 VLRRLRTSARPFFYDMSRQNWSRDDGKSILVASLFERFKMMRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + ++ + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSSAEMRELCYIAIHVFDRLAEIRNLDTRMTDTLTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|66277256|gb|AAY44559.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 9/211 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + Y L ++ + + + D + LPI W Sbjct: 34 GYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTLNNMLACDPIIQLARRQTLPIYWNR 93 Query: 92 IQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 + E ++ + L GI+FP+ +NG + F + ++++++E Sbjct: 94 LDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT-RERASSDLMLESS 152 Query: 149 --AHGACYQVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + + + + + LTERET CL A +G TS EIA LG++ Sbjct: 153 PILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERETECLFWASEGKTSGEIACILGITER 212 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN +L T K ++NR QAIAK + G + Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|241203295|ref|YP_002974391.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857185|gb|ACS54852.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 244 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + ++R F + + F + + ++ + + + Sbjct: 26 DIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGS--TVITSWPAELLALYDQEGLMVNSP 83 Query: 76 FLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L L FP G + F Sbjct: 84 VLRRLRTSARPFFYDMSRQNLSRDDGKSILVASLFERFKMMRCAYFPTHEPSGLRGAISF 143 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E + E+ + LT+RE CL G TS EI Sbjct: 144 AGDREPFSPAEMRELCYISIHIFDRLAEIRNLDTRMTDTLTDREIDCLNWTAAGKTSAEI 203 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 204 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|16760896|ref|NP_456513.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141412|ref|NP_804754.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053513|ref|ZP_03346391.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426356|ref|ZP_03359106.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213616131|ref|ZP_03371957.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650336|ref|ZP_03380389.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824072|ref|ZP_06543670.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25302436|pir||AH0749 cell-division regulatory protein STY2158 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503193|emb|CAD05699.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137039|gb|AAO68603.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 240 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 77/235 (32%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ F+ L ++ EV + + ++ L + ++RE Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|83859373|ref|ZP_00952894.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] gi|83852820|gb|EAP90673.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] Length = 241 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 79/226 (34%), Gaps = 3/226 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S S + L F + S D E + + D+ Sbjct: 15 SDSNEALCHAFKAFVETFGVEAFGYQVLPSPFDAADT-SFDFEYNTFPEAMQDVYFEERL 73 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + L P W +++ T Q L G PV + Sbjct: 74 YDHDPVTSRAATALQPQFWFDVEQTTPGTRFSQRLFELLRQSGFVDGFTIPVFGPYGLAA 133 Query: 131 YVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +V L + C ++ + + L + A +L+ERE LQ G Sbjct: 134 FVACGRFSGAFNLTAIQLRMLQLGCQELYSRTIMLRDYDAPAPPHLSEREVEILQWLARG 193 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ IA LG+S HTV+ + A VKL+A NRI A+ KA+R G I Sbjct: 194 KSNAVIAAILGVSPHTVDTIMRRAFVKLNASNRIAAVLKALRVGLI 239 >gi|166850622|gb|ABY91283.1| transcriptional regulator [Mesorhizobium huakuii] Length = 243 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 2/230 (0%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + + + + +L I + T+ +Q+ L ++ ++ + Sbjct: 13 QLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSGQQKQHVLLCDWPVEWLERYV 72 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + H P W+ + + S + G G+AFP+ Sbjct: 73 ARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSDEVMGDAGAFKLRDGLAFPLITLD 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184 + V E + L+ + +++ +S LT RE CLQ Sbjct: 133 GQIVMVSLGGEAVQLSGAEFGLVSLVSTYAVGRAMQIHTMATSTIDHIELTPRERECLQW 192 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|14627170|gb|AAK50054.2|AF364058_1 transcriptional activator [Burkholderia multivorans ATCC 17616] Length = 239 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ ++ I K F + P + + Y Sbjct: 13 SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + I+W + + R G+A G Sbjct: 73 EIDSTVRDGALSTNMIVWPDVDKIEPC-----PLWRDARDFGLSVGVAQSSWAARGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185 + L I + + + S LT RE L Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPETRVALTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 188 AEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|59940117|gb|AAX12597.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 9/211 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + Y L ++ + + + D + + LPI W Sbjct: 34 GYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTVNNMLACDPIIQLARTQTLPIYWNR 93 Query: 92 IQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 + E ++ + L GI+FP+ +NG + F + ++++++E Sbjct: 94 LDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGATGENGILSFIT-RERASSDLLLESS 152 Query: 149 --AHGACYQVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + + + + + LT+RET CL A +G TS EIA LG++ Sbjct: 153 PILSWMSNYIFEAAIRIVRQSMREEDPQEALTDRETECLFWASEGKTSGEIACILGITER 212 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN +L T K ++NR QAIAK + G + Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|221196069|ref|ZP_03569116.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] gi|221202743|ref|ZP_03575762.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221176677|gb|EEE09105.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221182623|gb|EEE15023.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] Length = 239 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ ++ I K F + P + + Y Sbjct: 13 SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + I+W + + R G+A G Sbjct: 73 EIDSTVRDGTLSTNMIVWPDVDKIEPC-----PLWRDARDFGLSVGVAQSSWAARGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185 + L I + + + S LT RE L Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTLTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 188 AEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236 >gi|161613489|ref|YP_001587454.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244797|ref|ZP_02669729.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462512|ref|ZP_02696443.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822990|ref|ZP_02834990.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445102|ref|YP_002041215.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448751|ref|YP_002046001.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250905|ref|YP_002146073.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204931037|ref|ZP_03221863.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207856536|ref|YP_002243187.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238912477|ref|ZP_04656314.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161362853|gb|ABX66621.1| hypothetical protein SPAB_01206 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403765|gb|ACF63987.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407055|gb|ACF67274.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195634505|gb|EDX52857.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214608|gb|ACH52005.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204320081|gb|EDZ05286.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205336361|gb|EDZ23125.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340659|gb|EDZ27423.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708339|emb|CAR32642.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320085432|emb|CBY95213.1| Regulatory protein sdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 240 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ F+ L ++ EV + + ++ + ++RE Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|261340314|ref|ZP_05968172.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316] gi|288317405|gb|EFC56343.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316] Length = 240 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + E+ +Q + +A F +++ P + I +Y Sbjct: 14 FLRFQELTCADEVY---QELQQQTQALEFDYFSLCVRHPVPFTRPKISVHSSYPDRWMAQ 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L I + + + Q GI + L Sbjct: 71 YKSENYFAVDPVLK-----PENFIQGHLPWTDELFADAQELWGGAQDHGIRKGITQCLML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELF-KKRSSAARNLTERET 179 H G++ + L E+ + +T L + ++RE Sbjct: 126 PNHALGFLSVSRTSLRENAIHHEEIELRLQMLVQMALTSLLRFEHETVMPPEMKFSKRER 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|59940111|gb|AAX12594.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRSLPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|296101736|ref|YP_003611882.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056195|gb|ADF60933.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 240 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 74/235 (31%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L + +S E+ +Q + +A F Y + P + I Y Sbjct: 14 FLRFQALTSASEVY---QELQRQTQALEFDYYALCLRHPVPFTRPRISVHATYPQRWMAQ 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L I + + + + GI + L Sbjct: 71 YQSENYFAIDPVLK-----PENFIQGHLPWTDELFADAEALWNGARDHGLRKGITQCLML 125 Query: 125 GFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 H G++ + + + E+ + +T L + ++RE Sbjct: 126 PNHALGFLSVSCTSVQAGAVTSEELELRLQMLLQMALTSLLRFEDEMVMPPEMKFSKRER 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|161520519|ref|YP_001583946.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353291|ref|YP_001948918.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221209754|ref|ZP_03582735.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] gi|160344569|gb|ABX17654.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337313|dbj|BAG46382.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221170442|gb|EEE02908.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] Length = 239 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ ++ I K F + P + + Y Sbjct: 13 SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + I+W + + R G+A G Sbjct: 73 EIDSTVRDGALSTNMIVWPDVDKIEPC-----PLWRDARDFGLSVGVAQSSWAARGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185 + L I + + + S LT RE L Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVALTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 188 AEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|59940043|gb|AAX12560.1| LuxR-type transcriptional regulator [Aeromonas sobria] Length = 258 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 11/243 (4%) Query: 1 MSENTL--TGKKSSSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNY 57 M ++ L + +++ + RL + R + Y + ++ + + Sbjct: 1 MKQDELFEYLEHLTTVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQC 59 Query: 58 DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFA 116 + D + LPI W + E + ++ + L Sbjct: 60 PVSWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRN 119 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAA 171 GI+FP+ + G + F + ++++++E + + + + S Sbjct: 120 GISFPLHGAAGETGILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQH 178 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK I Sbjct: 179 AALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISS 238 Query: 232 GYI 234 G + Sbjct: 239 GIL 241 >gi|172063602|ref|YP_001811253.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996119|gb|ACB67037.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDVDRIDPC-----PLWQDARDYGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S + LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236 >gi|59940089|gb|AAX12583.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEATIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|167572684|ref|ZP_02365558.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 239 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 73/238 (30%), Gaps = 14/238 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + + Y Sbjct: 7 DAYLQFSAAENEQQLFRQIAAYSKRL---GFEYCCYGIRVPLPISKPAVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W G+A Sbjct: 64 ERYQEMNYLEVDPTVRDGALSTNMIVWPEASRSDGTT-----LWNDARDHGLAVGVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTE 176 G + L + I + + L + + LT Sbjct: 119 WAPRGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|56413135|ref|YP_150210.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362061|ref|YP_002141698.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127392|gb|AAV76898.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093538|emb|CAR59000.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 240 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ F+ L ++ EV + + ++ + ++RE Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|121663600|emb|CAM12358.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 239 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 70/229 (30%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ + H + K F + P Q L+ Y Sbjct: 13 NTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + IIW R G+A G Sbjct: 73 EIDPTVRDGAASPNMIIWPDADAAEQPS-----LWRDARDFGMSVGVAQSSWAARGVFGL 127 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185 + L I + L + +A+ +LT+RE L Sbjct: 128 LTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKREREVLSWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI E+L +S TV ++ + KL A N++QA+ KAI G I Sbjct: 188 SEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236 >gi|16765288|ref|NP_460903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993519|ref|ZP_02574613.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|2992525|gb|AAC08299.1| SdiA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420484|gb|AAL20862.1| transcriptional regulator of ftsQAZ gene cluster [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328435|gb|EDZ15199.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247116|emb|CBG24939.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993936|gb|ACY88821.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158464|emb|CBW17974.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912940|dbj|BAJ36914.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224593|gb|EFX49656.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130228|gb|ADX17658.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988839|gb|AEF07822.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 240 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + + G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAKAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ F+ L ++ EV + + ++ + ++RE Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|260551305|ref|ZP_05825506.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] gi|260405619|gb|EEW99110.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] Length = 238 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 74/227 (32%), Gaps = 14/227 (6%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 EL + +++ F + L+NY D Sbjct: 19 DELFEVVKSTASKL---GFDYCAYGMQSPLSIAEPKTIMLNNYPQAWQKRYIEQRYVKVD 75 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + H L P++W S + + G A R G + Sbjct: 76 PTVQHCMVSLQPLVWSS---QNAKTQEEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTL 132 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGD 187 L+ E +A +T L + LT RE L+ + Sbjct: 133 ARSTDQLS-EKEQKAQYTNMYWLTQTLHSSIAKIVNDVEFSQFNLYLTNREKEALRWTAE 191 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIA+ +G++ TVN +L ++ KL+ N+I A +A+ G + Sbjct: 192 GKTSAEIAQIIGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|170700319|ref|ZP_02891331.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134753|gb|EDT03069.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 239 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W I + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDIDRIDPC-----PLWQDARDYGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S + LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236 >gi|126740492|ref|ZP_01756179.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. SK209-2-6] gi|126718293|gb|EBA15008.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. SK209-2-6] Length = 239 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 17/229 (7%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 SL L + + + + ++SA D Y Sbjct: 19 SLDGLQSIIEEVCQAFGVDDAMYHWVDSAGDQ-------YGCGTYKQAWIQRYLDKGYVR 71 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGY 131 D + P+ W+ + + G + P+R + Sbjct: 72 SDPVIAGCYQRFHPVDWRRLDW---TTRQAKEFRSDAQNYGVGNQGYSVPIRGPNGQFAL 128 Query: 132 VIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLA 185 + + I+ + LE KR L+ RE L L Sbjct: 129 FTVSHSCNDANWDEFIDTFSQELILVGHYFNRKALEFEPKRKPEHTPPLSPREMDALTLL 188 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY ++A+ L +S HT+ Y+ SA KL A+N AIA+AI G I Sbjct: 189 AIGYNRAQVAKTLSISEHTLRVYIESARFKLGALNTTHAIARAISCGLI 237 >gi|59940033|gb|AAX12555.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 11/244 (4%) Query: 1 MSENTLT--GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58 M ++ L + +++ + LI + Y + ++ + + Sbjct: 1 MKQDQLLEYLEHLTTVTDEDRLAELISRFTLGMGYDYYRFAVIIPMSMQRPKVVLFNQCP 60 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAG 117 D + LPI W + E ++ + L G Sbjct: 61 DSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNG 120 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSA 170 I+FP+ +NG + F + ++++++E + + + + Sbjct: 121 ISFPLHGAAGENGILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDP 179 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK + Sbjct: 180 QEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVS 239 Query: 231 FGYI 234 G + Sbjct: 240 SGIL 243 >gi|78061902|ref|YP_371810.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77969787|gb|ABB11166.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 239 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMAHYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDVDRIEPC-----PLWQDARDYGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + + A LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLAPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|206563716|ref|YP_002234479.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] gi|198039756|emb|CAR55726.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] Length = 239 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 68/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGALNTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S A LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|168239186|ref|ZP_02664244.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735895|ref|YP_002114983.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198243442|ref|YP_002215136.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|194711397|gb|ACF90618.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288026|gb|EDY27413.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937958|gb|ACH75291.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|322616943|gb|EFY13851.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618183|gb|EFY15075.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625853|gb|EFY22672.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626305|gb|EFY23115.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632720|gb|EFY29465.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639062|gb|EFY35755.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640503|gb|EFY37156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645988|gb|EFY42505.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649891|gb|EFY46312.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655499|gb|EFY51807.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660277|gb|EFY56515.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662958|gb|EFY59165.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668143|gb|EFY64302.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674097|gb|EFY70191.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675550|gb|EFY71624.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683038|gb|EFY79054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686732|gb|EFY82710.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195379|gb|EFZ80559.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199270|gb|EFZ84365.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204435|gb|EFZ89441.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207525|gb|EFZ92473.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211850|gb|EFZ96681.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217510|gb|EGA02229.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219586|gb|EGA04070.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223588|gb|EGA07903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231532|gb|EGA15645.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235975|gb|EGA20054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240545|gb|EGA24588.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245437|gb|EGA29437.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250207|gb|EGA34099.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253982|gb|EGA37806.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255491|gb|EGA39252.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262088|gb|EGA45651.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266211|gb|EGA49701.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270680|gb|EGA54121.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622885|gb|EGE29230.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 240 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDMLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ F+ L ++ EV + + ++ + ++RE Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|59940119|gb|AAX12598.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%) Query: 12 SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S+ + RL + R + Y + ++ + + + Sbjct: 14 TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + LPI W + E ++ + L GI+FP+ +N Sbjct: 73 LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132 Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 G + F + ++++++E + + + + S LT+RET CL Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK I G + Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|59940109|gb|AAX12593.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-46] Length = 260 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|66736599|gb|AAY54303.1| quorum sensing trancriptional regulator [Aeromonas veronii] Length = 258 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%) Query: 12 SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S+ + RL + R + Y + ++ + + + Sbjct: 14 TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + LPI W + E ++ + L GI+FP+ +N Sbjct: 73 LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132 Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 G + F + ++++++E + + + + S LT+RET CL Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK I G + Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|12620905|gb|AAG61132.1|AF330021_1 AHL receptor [Burkholderia stabilis] Length = 239 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 68/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMARYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGALSTNMIVWPDVDRSDP-----GPLWQDAREFGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S A LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISGRTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|255264823|ref|ZP_05344165.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium sp. R2A62] gi|255107158|gb|EET49832.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium sp. R2A62] Length = 258 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 17/233 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++++SL L + +++ K + + ++S + YD Sbjct: 13 EQATSLNHLQDSISDLRDLYKIDHIVYHWVSSDGEQ-------YGCGTYDRSWVQRYVEQ 65 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + P+ W+ + + + + G + P+R + Sbjct: 66 DYLRIDPVVVGCFQRFHPVDWKRLDWSSKAART--FQAEAIEAGVGIQGYSIPIRGPNGQ 123 Query: 129 NGYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSC 181 S + + LE K R AA+ L+ RE Sbjct: 124 FALFS-ASHNCDDDWWANWTEANRRDLILIAHTFNQKGLEFEKNRVPEAAKGLSPREVDA 182 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + GY+ ++A L +S HT+ AY+ SA KL A+N A+A+A+ G I Sbjct: 183 MTFLAMGYSRAQVANTLSISEHTLRAYIESARFKLGALNTTHAVARAMAHGLI 235 >gi|220920328|ref|YP_002495629.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944934|gb|ACL55326.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 246 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 74/225 (32%), Gaps = 5/225 (2%) Query: 11 SSSLQELSPRLHLIQN---RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 +L E+ I+ F +TI R + + D + Sbjct: 16 IDALDEVRDPFEAQTRIFEHIQHVGFTSFTITRLPRPSDRLGPNMLFNMWPKDWLTHYDR 75 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D + P W + + + + G PV Sbjct: 76 VGHYRFDPVVRQCYRTTEPFAWSEVPFDADQPDRARRVMDEAAAFGLGFGFCIPVHDALG 135 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLA 185 G V E + L+ ++ H ++RS R L+ RE L A Sbjct: 136 FQGGVSLAGERIDLSPKIRRGLHMLGLYAWGAATRTTEDRRRSEPGRLLSARERDVLSWA 195 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G T EEIA LG+S TV +L SA +K+ A N Q + +A+R Sbjct: 196 AMGRTREEIATILGVSHETVATHLKSARIKIGARNTTQTVVEALR 240 >gi|15889561|ref|NP_355242.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157444|gb|AAK88027.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 238 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 2/227 (0%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + S+ + S L +Q + A +A T+ L + + Sbjct: 12 RDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESSLPVWVVNAMTK 71 Query: 69 IETYGD-DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 GD + S ++P W E S + G + +G+ PV Sbjct: 72 DGALGDCPVIKRGASSMMPQYWSLEDPEMACGSLVDAVNSV-GSMGITSGLMVPVNGMSG 130 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + F + L + E + + L + S LT+RE ++ Sbjct: 131 NRHLMNFAGDRDTLPQASLNELCMIALHALETYDRLCRVASKGPSPLTKRELDVVRWTAQ 190 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIAE L +S HTVN Y+ +A KLD VNR Q +AK IR I Sbjct: 191 GKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLI 237 >gi|238024809|ref|YP_002909041.1| AHL receptor [Burkholderia glumae BGR1] gi|55509000|gb|AAV52804.1| AHL receptor [Burkholderia glumae BGR1] gi|237879474|gb|ACR31806.1| AHL receptor [Burkholderia glumae BGR1] Length = 239 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 70/229 (30%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ + H + K F + P Q L+ Y Sbjct: 13 NTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + IIW R G+A G Sbjct: 73 EIDPTVRDGAASPNMIIWPDADAAEQPS-----LWRDARDFGMSVGVAQSSWAARGVFGL 127 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185 + L I + L + +A+ +LT+RE L Sbjct: 128 LTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKREREVLSWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI E+L +S TV ++ + KL A N++QA+ KAI G I Sbjct: 188 SEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236 >gi|75674825|ref|YP_317246.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419695|gb|ABA03894.1| Transcriptional regulatory protein, LuxR family [Nitrobacter winogradskyi Nb-255] Length = 241 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 2/225 (0%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K+S+ E++ + + + + I +Q LH + + Sbjct: 18 KASTPAEIADAVVDVARPLGFSHVLAGIIPIPGMTAEQQISNVVLHRWPKAWSERYFTKG 77 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 + D + N+ P +W ++ + + G P+ + Sbjct: 78 YLFDDPTIQRVNTSTEPFLWSELEPTYRNTPAPTRVMGEAREFNLGCGFTVPMITLNGQT 137 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 SE + + + + L +K A NLT RE LQ +G Sbjct: 138 AGFSLASERAEVPSILRGQLQLIAMYAFAR--ALGQKYKPAPVNLTPREMDILQWMAEGK 195 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EI+ L +S H V+ KL+A NR Q +A A+R I Sbjct: 196 SDWEISVILKVSEHLVDKIARQLRAKLNATNRTQTVAVALRHNLI 240 >gi|218681045|ref|ZP_03528942.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 244 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 82/220 (37%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ L + ++R F + + + + ++ + + + Sbjct: 26 DIFRFLKRVTEAYRSRAFMVLNLPPITSLDIQGS--TVITSWPAELLALYDQEGLLVNSP 83 Query: 76 FLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + S + + L L G FP G V F Sbjct: 84 VLRRLRTSARPFSYDMSRDNWSRDDGKSVLVTALFERFRMMRGAYFPTHEPSGLRGAVSF 143 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + + E V E+ + LT+RE CL G TS EI Sbjct: 144 SGDRETFSPAEMRELCYIAVHVYDRLAEIRNLDARITDTLTDREIDCLNWTAAGKTSAEI 203 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 204 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|59940065|gb|AAX12571.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%) Query: 12 SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S+ + RL + R + Y + ++ + + + Sbjct: 14 TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + LPI W + E ++ + L GI+FP+ +N Sbjct: 73 LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132 Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 G + F + ++++++E + + + + S LT+RET CL Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK I G + Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|66277284|gb|AAY44573.1| LuxR-like protein [Aeromonas veronii bv. sobria] Length = 258 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%) Query: 12 SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S+ + RL + R + Y + ++ + + + Sbjct: 14 TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + LPI W + E ++ + L GI+FP+ +N Sbjct: 73 LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132 Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 G + F + ++++++E + + + + S LT+RET CL Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK I G + Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|134291839|ref|YP_001115608.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135028|gb|ABO59353.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 15/234 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + +++ + + + ++A F + + P + E +N+ Sbjct: 11 SMEQAETASDAFD---GLAPAVRALGFEYHAYVLRVTIPITRPASMEWNNFPQAWRAHYA 67 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + D L + + P+ W + R G + +R Sbjct: 68 QKRYQHADPVLHYGQACTRPMPW------PGPLAGHDAFWRDAADFGLRHGWSQTLRDHR 121 Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDF--LELFKKRSSAARNLTERETS 180 G ++ E + E C V L + S A L+ RE Sbjct: 122 GAMGTFSLVRGGPPISPEELRRTEPEMIWLCQFVHATMSNLIVSDVMPSGAMRLSLREKE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T+ E+A L L+ V ++ +A KLDA N+ A KA G I Sbjct: 182 VLHWTAEGKTAAEVAAILQLTERNVGFHIQNAMDKLDATNKTHATVKAAMLGLI 235 >gi|126725039|ref|ZP_01740882.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2150] gi|126706203|gb|EBA05293.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2150] Length = 226 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 27/238 (11%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ +L +L + I++ + +++ S + + Y + Sbjct: 2 QQAKTLDDLQNVILGIRDLYDVEHLVYHSVKSTGEQ-------YGVLTYTDEWTQHYVEQ 54 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESS------------GQLSVRLEGGLLPFA 116 D + P+ W+ + + LSV + G FA Sbjct: 55 NYERIDPVVLGCFQSFQPVTWKELDWSSKGSRRFLGEALDNGVGNQGLSVPIRGPAGQFA 114 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 F V + FT+E ++I+ AH + + K S + L+ Sbjct: 115 --LFTVNDNCKDGCWAKFTAEH---HRQMILIAHYLNNKALEIE---HGKLMSPVKALSP 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE+ L L GY+ A+ L +S HT+ Y+ +A KL + N A+A A+ G I Sbjct: 167 RESDSLTLLAMGYSRAHAADTLKISEHTLRVYIEAARFKLGSANTTHAVAAALSRGLI 224 >gi|167565578|ref|ZP_02358494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 239 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 73/238 (30%), Gaps = 14/238 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + + Y Sbjct: 7 DAYLQFSAAENEQQLFRQIAAYSKRL---GFEYCCYGIRVPLPISKPAVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W G+A Sbjct: 64 ERYQEMNYLEVDPTVRDGALSTNMIVWPEASRSDETT-----LWNDARDHGLAVGVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTE 176 G + L + I + + L + + LT Sbjct: 119 WAPRGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|319943176|ref|ZP_08017459.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319743718|gb|EFV96122.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 237 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 10/236 (4%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 L + ++ I+ A F P + I + NY Sbjct: 6 EELIRHHADESTDMRTVFSTIEKAAHALAFDHVAYCYQASLPASKPRITLIDNYPKAWRA 65 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 D L PI+W V R G + V+ Sbjct: 66 RYLEAGYLEQDPRLQCGARSQRPIMWTDELFSEVPA-----LWRDSHEHGLCHGWSQSVQ 120 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERE 178 G G + L+ + E T + + ++ R+LT RE Sbjct: 121 DGPGGMGMTSLSRTLPALSAHELNEKYDRMQWLAQMTHTLLSRIIRSQNAARVRHLTSRE 180 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ DG +S++IA+ L LS +TV+ ++ + KL+ N+ A+ +A+ G I Sbjct: 181 IEVLKWTADGKSSQDIADILTLSKNTVDFHIKNTVQKLNVPNKTAAVVQAVLLGLI 236 >gi|66277262|gb|AAY44562.1| LuxR-like protein [Aeromonas sp. SF6-7] Length = 260 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 9/229 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y L ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTDNHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E + + L GI+FP+ +NG Sbjct: 74 ACDPVIPLARKQTLPIYWNRLDERARFLPEGTMDVMGLAAEFGLRNGISFPLHGATGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + S LTERET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDSDPKDPLTERETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSTG 241 >gi|86750432|ref|YP_486928.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573460|gb|ABD08017.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 240 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 7/236 (2%) Query: 3 ENTLT----GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58 E+TLT ++++ ++ +L + I + ++Q LH + Sbjct: 7 EDTLTFVAALDRANTPDIVADKLLGVVRPFGYSQVLAGIIPTPRTSVKQQIANVVLHRWP 66 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 L + + D + ++ P +W + + ++ +R G G Sbjct: 67 LRWSERYFSRGYLFEDPTIRRVSTSSEPFVWSEL--QVGPDARANEIMREAGEFGLGCGF 124 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 P+ ++ + + L L+L +K + A LT+RE Sbjct: 125 TVPMITLDGQSAGLSIAGDRAELPPSHRGMVQLVAMYAFLRSLKLGEKPTPAI-TLTKRE 183 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T EI++ L +S H V+ KL AVNRIQA+A A+R G I Sbjct: 184 ADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGII 239 >gi|66277258|gb|AAY44560.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%) Query: 12 SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S+ + RL + R + Y + ++ + + + Sbjct: 14 TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + LPI W + E ++ + L GI+FP+ +N Sbjct: 73 LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132 Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 G + F + ++++++E + + + + S LT+RET CL Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK I G + Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|66277260|gb|AAY44561.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%) Query: 12 SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S+ + RL + R + Y + ++ + + + Sbjct: 14 TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + LPI W + E ++ + L GI+FP+ +N Sbjct: 73 LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132 Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 G + F + ++++++E + + + + S LT+RET CL Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK I G + Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|59940151|gb|AAX12614.1| LuxR-type transcriptional regulator [Aeromonas sp. 11m] Length = 260 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|66277280|gb|AAY44571.1| LuxR-like protein [Aeromonas caviae] Length = 258 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%) Query: 12 SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S+ + RL + R + Y + ++ + + + Sbjct: 14 TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + LPI W + E ++ + L GI+FP+ +N Sbjct: 73 LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAPGEN 132 Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 G + F + ++++++E + + + + S LT+RET CL Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK I G + Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|14586760|gb|AAK70352.1|AF333007_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia vietnamiensis] Length = 239 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ ++ I K F + P + + Y Sbjct: 13 SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + I+W + + G+A G Sbjct: 73 EIDSTVRDGALNTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185 + L I + + + S A LT RE L Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 188 AEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|198283772|ref|YP_002220093.1| LuxR family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665417|ref|YP_002426403.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] gi|71044540|gb|AAV53702.2| AfeR [Acidithiobacillus ferrooxidans] gi|198248293|gb|ACH83886.1| transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517630|gb|ACK78216.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 237 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 71/223 (31%), Gaps = 11/223 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L + + F + P + NY D + Sbjct: 19 RQVLAMASEMARKLEFDYCAYGLRMPLPLVRPKTVLFSNYPAVWQARYQAQEYQAIDPTV 78 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 H P++W + AG+A R G + Sbjct: 79 RHAMRSPSPVVWSDDLFA-----PARELWEEARSFGLRAGLAHTCRDAGGMGGMLTLARA 133 Query: 138 -FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTS 191 + E +A + V L + + + + L+ RE L+ G+G TS Sbjct: 134 GETVTTAEWQAKACHILWLVQAVHLSMIRVIAPKLQPEIAVQLSCREVEVLRWTGEGKTS 193 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L ++ TVN ++ A KL+AVN+ A+ +A G + Sbjct: 194 GEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAAMLGLL 236 >gi|59940103|gb|AAX12590.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-30] gi|59940105|gb|AAX12591.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940029|gb|AAX12553.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 261 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 10/244 (4%) Query: 1 MSENTLT--GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58 M ++ L + +S+ + LI + Y + +++ + + Sbjct: 1 MKQDQLLEYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRRKVVLFNQCP 60 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAG 117 D + LPI W + E ++ + L G Sbjct: 61 DSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNG 120 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSA 170 I+FP+ +NG ++ ++++++E + + + + Sbjct: 121 ISFPLHGAAGENGIILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDP 180 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK + Sbjct: 181 QEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVS 240 Query: 231 FGYI 234 G + Sbjct: 241 SGIL 244 >gi|167552822|ref|ZP_02346573.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322659|gb|EDZ10498.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 240 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ + L ++ EV + + ++ + ++RE Sbjct: 126 PNRALGFLSISRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|12620901|gb|AAG61130.1|AF330019_1 AHL receptor [Burkholderia multivorans] Length = 239 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ ++ I K F + P + + Y Sbjct: 13 SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMTHYQAQNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + I+W + + R P G+A G Sbjct: 73 EIDSTVRDGALSTNMIVWPDVDKIEPC-----PLWRDARDFGPSVGVAQSSWAARGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185 + L I + L + A LT RE L Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLSPEARVALTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 188 AEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|66277274|gb|AAY44568.1| LuxR-like protein [Aeromonas sp. CCRC 13880] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E C + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMCNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|299771984|ref|YP_003734010.1| Transcriptional activator protein phzR [Acinetobacter sp. DR1] gi|284158686|gb|ADB80058.1| AqsR [Acinetobacter sp. DR1] gi|298702072|gb|ADI92637.1| Transcriptional activator protein [Acinetobacter sp. DR1] Length = 238 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 9/210 (4%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F + L+NY D + H L P++W Sbjct: 32 LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVKQQYVRVDPTVQHCMLSLQPLVWS 91 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 S ++ S + G A R G + L + + Sbjct: 92 S---QSANTQSQKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSTDQLLEKEQKAQY 148 Query: 151 ----GACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 V + ++ + A NL T RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMFWLSQTVHSSIAKIVNETEFAQFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +L ++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLCNSMQKLNVNNKISAAIRAVMLGIL 238 >gi|66277278|gb|AAY44570.1| LuxR-like protein [Aeromonas sp. CCRC 13980] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940049|gb|AAX12563.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. veronii] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940071|gb|AAX12574.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940073|gb|AAX12575.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940077|gb|AAX12577.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940085|gb|AAX12581.1| LuxR-type transcriptional regulator [Aeromonas sp. AE-51] gi|59940087|gb|AAX12582.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940099|gb|AAX12588.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-24] gi|59940113|gb|AAX12595.1| LuxR-type transcriptional regulator [Aeromonas jandaei] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940091|gb|AAX12584.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940093|gb|AAX12585.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940081|gb|AAX12579.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940101|gb|AAX12589.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940163|gb|AAX12620.1| LuxR-type transcriptional regulator [Aeromonas sp. 26m] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|227821019|ref|YP_002824989.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340018|gb|ACP24236.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 257 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 82/230 (35%), Gaps = 3/230 (1%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPN 66 + + L+ + ++ F + I S + + N + + + Sbjct: 27 ASEIAKLETQFDIIRYMRRITHIFGFKTFLICSIPPIDMERLSAATVISNMPAELLNKYD 86 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEET--VIESSGQLSVRLEGGLLPFAGIAFPVRL 124 L + P E+ S + + F FPV Sbjct: 87 SLSMLRFSTGVRRLRETTTPFQITLEDWESEGGTPDSAADYIVMLRENGIFQANYFPVHD 146 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G VI L +E V E+ S++ L+ERE CL Sbjct: 147 AEGGRGAVILMGPEADLPMTAAMELQMIAIHVYNRLAEIGSVWKSSSTTLSEREIQCLSW 206 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIA LGLS HTVN YL T KLDAVNR QA+ KA++ GYI Sbjct: 207 TAAGKTSAEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 256 >gi|168259766|ref|ZP_02681739.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|200391066|ref|ZP_03217677.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603511|gb|EDZ02057.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205351245|gb|EDZ37876.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 240 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ + L ++ EV + + ++ + ++RE Sbjct: 126 PNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|161502928|ref|YP_001570040.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864275|gb|ABX20898.1| hypothetical protein SARI_00987 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 251 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ + + L R++ F Y++ P + I Y Sbjct: 25 LLRFQEMATAEGVYTELQYQTQRLE---FDYYSLCVRHPVPFTRPKISLRTTYPQAWVTH 81 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L + + V+ Q G+ V L Sbjct: 82 YQAENYIAIDPVLK-----PENFREGHLHWDNVLFHEAQAMWDAAQRFGLRRGVTQSVML 136 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERET 179 G++ + L ++ EV + + ++ L ++RE Sbjct: 137 PNRAVGFLSVSRGSLGCSSFTYDEVELRLQLLARESLSALTRLEDDIVMVPEMRFSKREK 196 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 197 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 251 >gi|13488404|ref|NP_109411.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14028158|dbj|BAB54750.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 242 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 4/222 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S + R NF + + ++++ + + Sbjct: 19 ARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREI--LADGWSPEWHHRYVTEAY 76 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + P W + ++ +L + GI P+ + G Sbjct: 77 FLHDPCVAQCRHSPEPFRWGELPVARLV-PRAKLVMDEAAEFGMKEGICIPIHVPLAGPG 135 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGY 189 V S+ + + + C L + LT RE L+ + G Sbjct: 136 VVTMASDRMEVPPSAMPLIETLCVHTFRSLSALGTPGDGNEPTPLTARERELLEWSAQGK 195 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++++IA LG++ +TV ++ + KLDA+N AI KA+R Sbjct: 196 STDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRR 237 >gi|66277270|gb|AAY44566.1| LuxR-like protein [Aeromonas sp. ym3] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940095|gb|AAX12586.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940097|gb|AAX12587.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|89027173|gb|ABD59317.1| AhyR [Aeromonas hydrophila] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940157|gb|AAX12617.1| LuxR-type transcriptional regulator [Aeromonas sp. 15m] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYEYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940107|gb|AAX12592.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] Length = 258 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 7/209 (3%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + Y + ++ + + + D + LPI W Sbjct: 34 GYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNR 93 Query: 92 IQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 + E ++ + L GI+FP+ +NG + F + ++++++E Sbjct: 94 LDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFITSER-ASSDLLLESS 152 Query: 149 --AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + + + S LT+RET CL A +G TS EIA LG++ TV Sbjct: 153 PILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFWASEGKTSGEIACILGITERTV 212 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N +L T K ++NR QAIAK I G + Sbjct: 213 NYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|59940045|gb|AAX12561.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940125|gb|AAX12601.1| LuxR-type transcriptional regulator [Aeromonas salmonicida subsp. salmonicida] gi|59940159|gb|AAX12618.1| LuxR-type transcriptional regulator [Aeromonas sp. 17m] Length = 260 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|117618881|ref|YP_855090.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560288|gb|ABK37236.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 261 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 8/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 ++ ++++++E + + + + LT+RET CL Sbjct: 134 IILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 193 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 194 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 244 >gi|59940133|gb|AAX12605.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|238027315|ref|YP_002911546.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876509|gb|ACR28842.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 234 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 64/215 (29%), Gaps = 9/215 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + P + NY + L D N+ Sbjct: 25 LSRVAAILGYEFVAYGIRRPLPLSNPPSLTVSNYPARWQERYQGLRLAEIDPVARAANAS 84 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P++W S ++ Q + G + R G + + Sbjct: 85 DRPVVWSSQGNDS-----DQAFWQEASSFGLMHGWSSATRGAEGTLGVLSLARGGDAIDE 139 Query: 144 EVI----IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 H NLT RET L+ DG T+ EI+ L Sbjct: 140 VERDRNEFIVHWLANVAHAALAPFLPAAGEPEANLTSRETDVLKWTADGKTAYEISRILS 199 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN ++ + KL N+IQA+AKA G + Sbjct: 200 ISESTVNFHVKNIMSKLGTSNKIQAVAKAALTGML 234 >gi|66277266|gb|AAY44564.1| LuxR-like protein [Aeromonas sp. ym1] Length = 260 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 84/229 (36%), Gaps = 9/229 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y L ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTDNHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPVIRLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + LT+RET CL Sbjct: 134 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDNDPKDPLTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 A +G TS EIA LG++ TVN +L T K ++NR AIAK + G Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGVSTG 241 >gi|59940127|gb|AAX12602.1| LuxR-type transcriptional regulator [Aeromonas sp. Manipal A1] gi|59940139|gb|AAX12608.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940153|gb|AAX12615.1| LuxR-type transcriptional regulator [Aeromonas sp. 12m] gi|59940161|gb|AAX12619.1| LuxR-type transcriptional regulator [Aeromonas sp. 19m] Length = 260 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940149|gb|AAX12613.1| LuxR-type transcriptional regulator [Aeromonas sp. 1m] Length = 260 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDEPQEALTDRETECLV 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940047|gb|AAX12562.1| LuxR-type transcriptional regulator [Aeromonas jandaei] gi|59940057|gb|AAX12567.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940079|gb|AAX12578.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940147|gb|AAX12612.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 70363] Length = 260 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|145300631|ref|YP_001143472.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] gi|61218504|sp|P0A3J5|AHYR_AERHY RecName: Full=Transcriptional activator protein AhyR/AsaR gi|61218505|sp|P0A3J6|AHYR_AERSA RecName: Full=Transcriptional activator protein AhyR/AsaR gi|899145|emb|CAA61654.1| AhyR [Aeromonas hydrophila] gi|1519237|gb|AAB70018.1| transcriptional activator [Aeromonas salmonicida] gi|142853403|gb|ABO91724.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|134293938|ref|YP_001117674.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137095|gb|ABO58209.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 13/233 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAR 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + G+A Sbjct: 70 NYIEIDSTVREGALSTNMIVWPDVDRIDPC-----PLWEDARDFGLAVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSC 181 G + + L I + +++ F+ L K +A LT RE Sbjct: 125 FGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-LPKLSPAAGVTLTAREREV 183 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 184 LCWTAEGKTACEIGQILSISERTVNFHVNNILEKLAATNKVQAVVKAIAAGLI 236 >gi|283832684|ref|ZP_06352425.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220] gi|291072359|gb|EFE10468.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220] Length = 240 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L ++ F Y + P + Y Sbjct: 14 LLRFQEMATAEDVYNELQQQTQHLE---FDFYALCVRHPVPFTRPKTSLYTTYPKAWVAH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L + + Q G+ + L Sbjct: 71 YQSENYFAIDPVLK-----PENFSQGHLPWSDTLFRDAQPLWDAARNHGLRKGMTQCLML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERET 179 G++ + + + EV + + ++ + L ++RE Sbjct: 126 PNRALGFLSVSRANIRNSRLANDEVELRMQLLVRESLSVLMRLEDDMVMVPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|86747544|ref|YP_484040.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570572|gb|ABD05129.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 242 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 80/239 (33%), Gaps = 8/239 (3%) Query: 2 SENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICELH 55 E+ L G+++ + + RL ++ I + F+ Y + + + + Sbjct: 4 GESHLWGRRALEFVDAADRLDAPSLVRQFESHIASAGFSAYIMAALPAPGAGLAELTLAN 63 Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 + ++ D H + + P W + + + + Sbjct: 64 GWPRGWFELYVGRNYMAVDPVPRHGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEFGLV 123 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 G P+ + E L L + R LT Sbjct: 124 RGYCIPLHYDDGG-AMISMAGEAPDLDPTAKGAMQLIGVYAHNRLRSLN-RPKPQRRLLT 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L A G T+ EI+ L ++ TV +L A+ KL+AVNR A+AKA+ G I Sbjct: 182 SRECEILSWAAQGKTAWEISMILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI 240 >gi|306021776|gb|ADM80305.1| LuxR [Aeromonas sobria] Length = 237 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 8/223 (3%) Query: 19 PRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 RL + R + Y + ++ + + + D + Sbjct: 2 DRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNMLACDPVI 61 Query: 78 FHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 LPI W + E ++ + L GI+FP+ +NG + F + Sbjct: 62 QLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT 121 Query: 137 EFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTS 191 ++++++E + + + + S LT+RET CL A +G TS Sbjct: 122 SER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFWASEGKTS 180 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA LG++ TVN +L T K ++NR QAIAK I G + Sbjct: 181 GEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 223 >gi|56695286|ref|YP_165634.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56677023|gb|AAV93689.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] Length = 239 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 15/234 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 +S+L++L +++ ++ + + ++SA D Y + Sbjct: 13 DLDATSALEDLERVTIKLRDTLEIDHIVYHWVDSAGDQ-------YGCATYPKAWQERYL 65 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + P+ W+ + + + + G + P+R Sbjct: 66 ERNYHRIDPVILGCFQRFHPVDWKRLDWSGKVAKA--FLQDALKHGVGNQGYSIPIRGPN 123 Query: 127 HKNGYVIFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSS-AARNLTERETS 180 + A + + LE + R RNL+ RE Sbjct: 124 GQFALFTVNHVCDDQAWSEFTEIYGRDLILIAHFFNRKALEFERSRQPDQPRNLSPREVD 183 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L GY+ ++A L +S HT+ Y+ SA KL A+N AIA A+ G I Sbjct: 184 AMTLLALGYSRAQVAHSLSISEHTLRVYIESARFKLGALNTTHAIATAMSRGLI 237 >gi|66277276|gb|AAY44569.1| LuxR-like protein [Aeromonas sp. CCRC 13881] Length = 260 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|62180524|ref|YP_216941.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583549|ref|YP_002637347.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128157|gb|AAX65860.1| transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468076|gb|ACN45906.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715000|gb|EFZ06571.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 240 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 74/235 (31%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ ++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDFYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ + L ++ EV + + ++ + ++RE Sbjct: 126 PNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|14586749|gb|AAK70347.1|AF333002_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia cepacia] Length = 239 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 67/229 (29%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ ++ I K F + P + + Y Sbjct: 13 SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + I+W + + R G+A G Sbjct: 73 EIDSTVRDGALSTNMIVWPDVDKIEPC-----PLWRDARDFGLSVGVAQSSWAARGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARNLTE--RETSCLQLA 185 + L I + + + S +T+ RE L Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTQTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 188 AEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236 >gi|14993797|gb|AAK73190.1| transcriptional activator CsaR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 74/225 (32%), Gaps = 10/225 (4%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 QE + L++ +++ F Y P + I +Y + D Sbjct: 22 QESAQVFALLEREVRSLGFDFYAYGVRHSIPFTRPKIDIYGSYPQAWVERYQQQNYAAID 81 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + ++W + G P+ + Sbjct: 82 PTILNGLRSTEMVVWSDALF-----GKSSVLWGEAREWGLRVGATLPIHTPDSALSVLSV 136 Query: 135 TSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAARN----LTERETSCLQLAGDGY 189 E ++ + E +I + L + +++ L+ RE LQ DG Sbjct: 137 ARECTAISAVELEEIRLRLRCIIELATMRLGELGHPSSQAEQLELSAREREILQWTADGK 196 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S EIA LG+SV+TVN +L K A N+ A A A G I Sbjct: 197 SSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLGLI 241 >gi|260467388|ref|ZP_05813560.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259028848|gb|EEW30152.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 242 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 4/222 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S + + L R RNF + + ++++ + + Sbjct: 19 ARSAEAILHEFRLAMERYGLRNFLITGLPVPHGTDWQREI--LADGWSPEWHHRYVSEEY 76 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + P W + ++ + +L + GI P+ + G Sbjct: 77 FLHDPCVAQCRHSPEPFRWAELPAARLV-ARAKLVMDEAAEFGMKEGICVPIHVPLAGPG 135 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGY 189 V S+ + + + C L LT RE L+ + G Sbjct: 136 VVTMASDRMDVPPSAMPLIETLCVHTFRSLSGLGTPGDGYEPTPLTARERELLEWSAQGK 195 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++++IA LG++ +TV ++ + KLDA+N AI KA+R Sbjct: 196 STDDIACILGVTRNTVESHQRNIRAKLDAINVAHAIVKALRR 237 >gi|59940031|gb|AAX12554.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 11/244 (4%) Query: 1 MSENTLT--GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58 M ++ L + +S+ + LI + Y + +++ + + Sbjct: 1 MKQDQLLEYLEHLTSVTDEDRLAELIGRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCP 60 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAG 117 D + LPI W ++ ++ + L G Sbjct: 61 DSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNG 120 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSA 170 I+FP+ +NG + F + ++++++E + + + + Sbjct: 121 ISFPLHGAAGENGILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDP 179 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK + Sbjct: 180 QEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVS 239 Query: 231 FGYI 234 G + Sbjct: 240 SGIL 243 >gi|320191891|gb|EFW66538.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC1212] Length = 240 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ F Y++ P + + NY Sbjct: 14 LLRFQRMETAEEVYHEIELQAQQLE---FDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W + Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|163758577|ref|ZP_02165664.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162283867|gb|EDQ34151.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 237 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 3/227 (1%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K +++ EL+ L + + R F+++ + F R L N + + + L Sbjct: 12 KTATTEHELAVSLQALTSEFDFRFFSIF--DIPATFSDRLSKHIRLSNLPSEYIEEYDSL 69 Query: 69 IETYGDDFLFHFNSGLLPI-IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 P+ + + + Q+ + G+ FPV Sbjct: 70 NLLSNSSVFAMLRQSTAPMTRFLDLAVKERPTEEQQVMRAVFEKHNMTMGVYFPVHGSNG 129 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + F L+ + ++ K + A +T RE L A + Sbjct: 130 RRAAMAFYGTRPALSFAETGVLGLCVLHAFDAYSKMTNKTGTKANGITTRELEVLHWAAN 189 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIA L LS HTVN Y+ SA KLD VNR Q +AKA+R I Sbjct: 190 GKTSTEIAAILSLSDHTVNTYMNSAMRKLDCVNRTQLVAKALRLHLI 236 >gi|59940135|gb|AAX12606.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|53717160|ref|YP_105961.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53721911|ref|YP_110896.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67643283|ref|ZP_00442030.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|76818142|ref|YP_337635.1| BpsR [Burkholderia pseudomallei 1710b] gi|121598108|ref|YP_989940.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124382764|ref|YP_001024423.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126442328|ref|YP_001062292.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126445689|ref|YP_001078154.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|126458533|ref|YP_001075258.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|134278985|ref|ZP_01765698.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|167000171|ref|ZP_02265991.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|167723232|ref|ZP_02406468.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei DM98] gi|167742204|ref|ZP_02414978.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 14] gi|167819378|ref|ZP_02451058.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 91] gi|167827752|ref|ZP_02459223.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 9] gi|167849226|ref|ZP_02474734.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei B7210] gi|167906168|ref|ZP_02493373.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei NCTC 13177] gi|167914491|ref|ZP_02501582.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 112] gi|167922390|ref|ZP_02509481.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei BCC215] gi|217418339|ref|ZP_03449846.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|226197543|ref|ZP_03793118.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|237507418|ref|ZP_04520133.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|242313785|ref|ZP_04812802.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|254174155|ref|ZP_04880817.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|254183341|ref|ZP_04889933.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|254193094|ref|ZP_04899529.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|254200806|ref|ZP_04907171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|254204776|ref|ZP_04911129.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|254263057|ref|ZP_04953922.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] gi|254300240|ref|ZP_04967686.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|254357025|ref|ZP_04973300.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|37223137|gb|AAQ90167.1| transcriptional activator [Burkholderia pseudomallei] gi|40646736|gb|AAR88244.1| BpsR [Burkholderia pseudomallei] gi|43469096|gb|AAS46624.1| BpsR [Burkholderia pseudomallei] gi|52212325|emb|CAH38349.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52423130|gb|AAU46700.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|76582615|gb|ABA52089.1| BpsR [Burkholderia pseudomallei 1710b] gi|121225906|gb|ABM49437.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124290784|gb|ABN00054.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126221819|gb|ABN85324.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126232301|gb|ABN95714.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|126238543|gb|ABO01655.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|134249404|gb|EBA49485.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|147748418|gb|EDK55493.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|147754362|gb|EDK61426.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|148026052|gb|EDK84175.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|157809975|gb|EDO87145.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|160695201|gb|EDP85171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|169649848|gb|EDS82541.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|184213874|gb|EDU10917.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|217397643|gb|EEC37658.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|225930152|gb|EEH26164.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|234999623|gb|EEP49047.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|238524594|gb|EEP88026.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|242137024|gb|EES23427.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|243063823|gb|EES46009.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|254214059|gb|EET03444.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] Length = 239 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 14/238 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W G+A Sbjct: 64 ERYQEMNYLEVDPTVREGALSSNMIVWPEASASDATT-----LWSDARDHGLAVGVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176 G + L + I ++A+ + + + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|66277264|gb|AAY44563.1| LuxR-like protein [Aeromonas sp. SF8-170] Length = 260 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|170743557|ref|YP_001772212.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197831|gb|ACA19778.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 245 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 1/226 (0%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++++ + + +L + + L T+ P ++ Y + Sbjct: 19 RTATPENVRDQLLRTLAGVGVEHVLLATLRICDAVPCDRRPTVFAGTYPDEWARRYYARD 78 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + W + + + + G G P+ Sbjct: 79 YILHDPVVRGVGERGSGFAWSDPGLCAPDDRAARRVLDEAGEFGLREGFTLPLLTLEGDT 138 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDG 188 V F E L L+ V + L L K + A L+ RE LQ A DG Sbjct: 139 AGVSFVGEKLDLSPAVRGMLTLVGTYALGQVLLLAKGETGPLAEPLSPRERESLQWAADG 198 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +EIA+ +G+S H +L + KL +R A+A +R G I Sbjct: 199 KSDQEIADAMGISAHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 244 >gi|167897824|ref|ZP_02485226.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 7894] Length = 239 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 14/238 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W G+A Sbjct: 64 ERYEEMNYLEVDPTVREGALSSNMIVWPEASASDATT-----LWSDARDHGLAVGVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176 G + L + I ++A+ + + + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|48375112|gb|AAT42219.1| PcoR [Pseudomonas fluorescens] Length = 234 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 15/230 (6%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 +L S L + + L+ + + P I + NY + Sbjct: 10 TLDAWSQVLFSLAKDCGFSS-VLFGVKPTISTPFSSSTI--ISNYSKSWRAFYDSNACYE 66 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D +FH + LP++W E I +G+ P+ + G + Sbjct: 67 VDPVVFHCLNSSLPLVWTK---ENFINPPELQLYEAASASGVRSGLCMPIHGPRGEFGML 123 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFL--------ELFKKRSSAARNLTERETSCLQL 184 F ++ ++I + ++ D+L +K LT RE CL+ Sbjct: 124 NFITDEKSP-ADLINAQGLPQFALMRDYLIESFQKLQNASEKEFETPPXLTARELECLKW 182 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI+ L + TVN ++ + K +A +R A+ IR G + Sbjct: 183 VAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232 >gi|59940035|gb|AAX12556.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 89/234 (38%), Gaps = 9/234 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +++ + LI + Y + +++ + + Sbjct: 11 EHLTTVTDEDRLAELISRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCPDSWVQAYTAN 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + LPI W ++ ++ + L GI+FP+ Sbjct: 71 HMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAG 130 Query: 128 KNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETS 180 +NG + F + ++++++E + + + + LT+RET Sbjct: 131 ENGILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETE 189 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 190 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|254511393|ref|ZP_05123460.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] gi|221535104|gb|EEE38092.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] Length = 239 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 15/240 (6%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +++L EL+ +++R++ + + ++ A D Y Sbjct: 7 LSQILEDLENTNTLDELTSVSVQLRDRLQIDHITYHWVDGAGDQ-------YGFTTYSDA 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D + + W+ + + + G + Sbjct: 60 WDARYREKNYHRIDPVILGCFQRFHAVDWKQLNWSGKA--VRAFLQDAQDHGVGNQGYSI 117 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSS-AARNL 174 P+R + S +A + I + Y + LE + R R L Sbjct: 118 PLRGPSGQFALFTVNSTCDDVAWQAFITNYGRDLILVAYFLNRKALEFAQNRQPETTRAL 177 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE + L GY+ ++A L +S HT+ AY+ SA KL A N AIA A+ G I Sbjct: 178 SPREIDAMTLLALGYSRAQVAHSLSISEHTLRAYIESARSKLGAQNTTHAIATALSRGLI 237 >gi|167584437|ref|ZP_02376825.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 239 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ ++ I K F + P + + Y Sbjct: 13 SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQEQNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + I+W ++ G+A G Sbjct: 73 DIDSTVRDGALSTNLIVWPDAD-----KAGASPLWADARASGLAVGVAQSSWAARGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185 + L I + + + + N LT RE L Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSGFMVPKLAPEANVVLTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 188 AEGKTACEIGQILNISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|4103042|gb|AAD12726.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 68/232 (29%), Gaps = 11/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+ ++ I K F + P + + Y Sbjct: 10 QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQ 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + I+W + + G+A Sbjct: 70 NYIEIDSTVRDGALNTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L I + + + S A LT R+ L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARDREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|91974882|ref|YP_567541.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91681338|gb|ABE37640.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 242 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 78/242 (32%), Gaps = 10/242 (4%) Query: 1 MSENT--LTGKKSSSLQELSPRLH------LIQNRIKARNFALYTINSALDFPRRQQLIC 52 MS + G+++ + + RL + I + F+ Y + + Sbjct: 1 MSADEGNQWGRRALEFVDAADRLDGPSLIRQFETHIASGGFSAYIMAGLPSPGAGLADLT 60 Query: 53 ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 + + ++ D H + + P W + + + Sbjct: 61 LANGWPRGWFELYVRENYIAVDPVPRHGATTVQPFEWSEAPYDRKQNRAAHKVMTHATEF 120 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 G P+ + + L L + R Sbjct: 121 GLVRGYCIPLHYDEGGAV-ISMAGDQPDLDPVAKGAMQLIGVYAHNRIRSL-HRPKPQRR 178 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L A G T+ EI+ L ++ TV +L A+ KL+AVNR A+AKA+ FG Sbjct: 179 LLTSRECEILLWAAHGKTAWEISIILHIAERTVKFHLIEASKKLNAVNRTAAVAKALAFG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|15964582|ref|NP_384935.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309328|ref|ZP_07588991.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320064|ref|ZP_07599485.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073760|emb|CAC45401.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894279|gb|EFN25044.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900197|gb|EFN30815.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 277 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 80/230 (34%), Gaps = 3/230 (1%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPN 66 + + L+ + ++ + F + I S + + N + + + Sbjct: 47 ASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMPAELLNKYD 106 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEET--VIESSGQLSVRLEGGLLPFAGIAFPVRL 124 L + P E S + + F FPV Sbjct: 107 SLSMLRFSTGVRRLRETTTPFQVMLEDWEREGGKPDSAADYIAMLRENGIFQANYFPVHD 166 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G VI L +E V E+ + L+ERE CL Sbjct: 167 AEGGRGAVILMGPEAELPMTAAMELQMIAIHVYNRLAEIGSVWKNTNTVLSEREIQCLSW 226 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIA LGLS HTVN YL T KLDAVNR QA+ KA++ GYI Sbjct: 227 TAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 276 >gi|59940067|gb|AAX12572.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W ++ ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940145|gb|AAX12611.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 21725] Length = 260 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVITDF---LELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFQAAIRNVRVSLRDDEPQGALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|83716915|ref|YP_439706.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|167578146|ref|ZP_02371020.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616276|ref|ZP_02384911.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142845|ref|ZP_05591107.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650740|gb|ABC34804.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 239 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 14/238 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W G+A Sbjct: 64 ERYQEMNYLEVDPTVRDGALSSNMIVWPEASANDATT-----LWSDARDHGLAVGVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176 G + L + I ++A+ + + + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|59940075|gb|AAX12576.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W ++ ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940123|gb|AAX12600.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] gi|59940137|gb|AAX12607.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W ++ ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|71057001|emb|CAI51628.1| eR transcriptional regulator [Acidithiobacillus ferrooxidans] Length = 214 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 68/208 (32%), Gaps = 11/208 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 F + P + NY D + H P++W Sbjct: 11 FDYCAYGLRMPLPLVRPKTVLFSNYPAVWQARYQAQEYQAIDPTVRHAMRSPSPVVWSDD 70 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHG 151 + AG+A R G + + E +A Sbjct: 71 LFA-----PARELWEEARSFGLRAGLAHTCRDAGGMGGMLTLARAGETVTTAEWQAKACH 125 Query: 152 ACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + V L + + + + L+ RE L+ G+G TS EIA L ++ TVN Sbjct: 126 ILWLVQAVHLSMIRVIAPKLQPEIAVQLSCREVEVLRWTGEGKTSGEIANILNITERTVN 185 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL+AVN+ A+ +A G + Sbjct: 186 FHISKAMAKLNAVNKTAAVLQAAMLGLL 213 >gi|66277272|gb|AAY44567.1| LuxR-like protein [Aeromonas sp. ym4] Length = 260 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940129|gb|AAX12603.1| LuxR-type transcriptional regulator [Aeromonas sp. ABJ] Length = 260 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 13/225 (5%) Query: 22 HLIQNRIKAR----NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + I + Y + ++ + + D + Sbjct: 20 DRLAELIGRFTLGMGYDYYRFALIIPTSMQRPKVVLFNQCPDSWVQAYTANHMLACDPII 79 Query: 78 FHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 LPI W + E ++ + L GI+FP+ +NG + F + Sbjct: 80 QLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT 139 Query: 137 EFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQLAGDGY 189 ++++++E + + + + LT+RET CL A +G Sbjct: 140 AER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGK 198 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 199 TSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSCGIL 243 >gi|59940061|gb|AAX12569.1| LuxR-type transcriptional regulator [Aeromonas encheleia] gi|59940121|gb|AAX12599.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W ++ ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|46371737|gb|AAS90557.1| transcriptional activator [Burkholderia pseudomallei] Length = 239 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 14/238 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W G+A Sbjct: 64 ERYQEMNYLEVDPTVREGALSSNMIVWPEASASDATT-----LWSDARDHGLAVGVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176 G + L + I ++A+ + + + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 179 RERKVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|15802351|ref|NP_288377.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 EDL933] gi|15831908|ref|NP_310681.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. Sakai] gi|168751842|ref|ZP_02776864.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|168758227|ref|ZP_02783234.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|168771520|ref|ZP_02796527.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|168777340|ref|ZP_02802347.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|168790328|ref|ZP_02815335.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|168802260|ref|ZP_02827267.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|195939220|ref|ZP_03084602.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC4024] gi|208810274|ref|ZP_03252150.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208816575|ref|ZP_03257695.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208820421|ref|ZP_03260741.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209399275|ref|YP_002271030.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|217329032|ref|ZP_03445113.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254793566|ref|YP_003078403.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. TW14359] gi|261227589|ref|ZP_05941870.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK2000] gi|261255819|ref|ZP_05948352.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK966] gi|291283093|ref|YP_003499911.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|12516014|gb|AAG56931.1|AE005414_8 transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. EDL933] gi|13362122|dbj|BAB36077.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. Sakai] gi|187767387|gb|EDU31231.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|188014167|gb|EDU52289.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|189354905|gb|EDU73324.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|189359736|gb|EDU78155.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|189370214|gb|EDU88630.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|189375707|gb|EDU94123.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|208724790|gb|EDZ74497.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208730918|gb|EDZ79607.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208740544|gb|EDZ88226.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209160675|gb|ACI38108.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|209767028|gb|ACI81826.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767030|gb|ACI81827.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767032|gb|ACI81828.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767034|gb|ACI81829.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767036|gb|ACI81830.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|217318379|gb|EEC26806.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254592966|gb|ACT72327.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. TW14359] gi|290762966|gb|ADD56927.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|320647124|gb|EFX15957.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. 493-89] gi|320658009|gb|EFX25771.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658581|gb|EFX26275.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. USDA 5905] gi|320668479|gb|EFX35306.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. LSU-61] gi|326342324|gb|EGD66105.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1044] gi|326344831|gb|EGD68578.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1125] Length = 240 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W + Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|59940115|gb|AAX12596.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W ++ ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940039|gb|AAX12558.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 9/211 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + Y L +++ + + + D + + LPI W Sbjct: 34 GYDYYRFALILPTSMQRRKVVLFNQCPDSWVQAYTVNNMLACDPIIQLARTQTLPIYWNR 93 Query: 92 IQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 + E ++ + L GI+FP+ +NG + F + ++++++E Sbjct: 94 LDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT-RERASSDLLLESS 152 Query: 149 --AHGACYQVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + + + + + LTERET CL A DG TS EIA LG++ Sbjct: 153 PILSWMSNYIFEAAIRIVRQSMREDDPQEALTERETECLFWASDGKTSGEIACILGITER 212 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN +L T K ++NR QAIAK + G + Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKRVSSGIL 243 >gi|256022426|ref|ZP_05436291.1| DNA-binding transcriptional activator SdiA [Escherichia sp. 4_1_40B] Length = 240 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W + Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|172064983|ref|YP_001815695.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997225|gb|ACB68142.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 73/234 (31%), Gaps = 15/234 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + ++ + E + ++A F Y + P + I NY Sbjct: 11 SLEQVKTASEAFD---NLAPAVRALGFEYYAYVLRITIPITRPAIMGWSNYPEAWRTHYT 67 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + D L + + P+ W R G + R Sbjct: 68 QRDYQHADPVLHYGQACTRPMPW------PGPLPGYDAFWRDAAAFGLCYGWSQTTRDHR 121 Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDF--LELFKKRSSAARNLTERETS 180 G V +A + + E C V L + S A L+ RE Sbjct: 122 GAMGTVSLVRGGPPIAPDELRRTEPEMIWFCQFVHATMSNLIVSDVMPSGAMRLSLREKQ 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T+ E+A L LS V ++ +A KLDA N+ A KA G I Sbjct: 182 VLHWTAEGKTAAEVAVILQLSERNVGFHIQNAIDKLDAANKTHATVKAAMLGLI 235 >gi|16129863|ref|NP_416426.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|89108751|ref|AP_002531.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. W3110] gi|170081564|ref|YP_001730884.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238901125|ref|YP_002926921.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253773131|ref|YP_003035962.1| DNA-binding transcriptional activator SdiA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|2506570|sp|P07026|SDIA_ECOLI RecName: Full=Regulatory protein SdiA gi|1736575|dbj|BAA15736.1| DNA-binding transcriptional activator [Escherichia coli str. K12 substr. W3110] gi|1788224|gb|AAC74983.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|169889399|gb|ACB03106.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238860878|gb|ACR62876.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253324175|gb|ACT28777.1| transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448967|gb|ACX39389.1| transcriptional regulator, LuxR family [Escherichia coli DH1] gi|315136553|dbj|BAJ43712.1| DNA-binding transcriptional activator SdiA [Escherichia coli DH1] Length = 240 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|109896689|ref|YP_659944.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109698970|gb|ABG38890.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 248 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 10/239 (4%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 E + +SSS+ L I + L I + I + NY Sbjct: 9 ELLESVDESSSIDALKETCERFCQLIDIPFYLLGVIGQTSSYS---PTIRVISNYPEKWL 65 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSI-QEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + E D + + PI W + + + + G L + G++ P Sbjct: 66 EFYFKESEQQNDPVVKYIFEKQSPIRWDKLVEYQDFSSTKGLLVFEKAAAYGLYNGLSIP 125 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDFLELFKKRSSAARN--LT 175 +R + AN V+ A C+ + ++ L S LT Sbjct: 126 IRSTSENIAVFSVAIDERSDANRVLDNAQMFCHTFATHLFERYVLLEISASDETDRRELT 185 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE CL A +G T+ EI++ + +S TV +LG++ KL A+NR A+A AI+ G I Sbjct: 186 KRELECLFWACEGKTAWEISQIINVSERTVLFHLGNSNTKLGAINRQHAVALAIKKGII 244 >gi|237731962|ref|ZP_04562443.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2] gi|226907501|gb|EEH93419.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2] Length = 240 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L ++ F Y + P + Y Sbjct: 14 LLRFQEMATAEDVYTELQQQTQHLE---FDFYALCVRHPVPFTRPKTSLHTTYPKAWVAH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L + + Q G+ + L Sbjct: 71 YQSENYFAIDPVLK-----PENFSQGHLPWNDTLFRDAQPLWDAARNHGLRKGMTQCLML 125 Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ + + ++EV + + ++ L + ++RE Sbjct: 126 PNRALGFLSVSRASIRNSRLASDEVELRMQLLVRESLSVLTRLEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|254465085|ref|ZP_05078496.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium Y4I] gi|206685993|gb|EDZ46475.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium Y4I] Length = 251 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 80/228 (35%), Gaps = 15/228 (6%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 +L+ L + + + + +A + Y + Sbjct: 31 TLEGLQLIVEQVCEVFGVDHAMYLWVETAGNH-------YYFGTYSEAWTGRYLDKAYSR 83 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + P+ W+ + + + + + G A P+R + Sbjct: 84 VDPVVVGCYQRFHPVDWKRLDW--NPKPAREFLKDAMEHGVGNQGYAIPIRGPNGQFALF 141 Query: 133 IFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAG 186 + A E + + + LEL R++ A+ L+ RE L L Sbjct: 142 TLSHNCGDAAWEKLVAKYNRDFILVAHYFNRKVLELEPSRTAEHAQPLSPREVDALTLLA 201 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+ ++A+ L +S HT+ Y+ SA KL A+N AIA+A+ G I Sbjct: 202 IGYSRAQVAQTLAISEHTLRVYIESARFKLGAINTTHAIARAVSLGLI 249 >gi|325496964|gb|EGC94823.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ECD227] Length = 240 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ +S +++ L L +++ F Y++ P + + Y Sbjct: 18 QEMASAEDVFQELQLQTQKLE---FDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSYYQQH 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L N ++W Q G+ + L Sbjct: 75 NFLAIDPVLKPENFSQGHLLWDDALFS-----EAQPLWDAARAHGLRRGVTQYLMLSNRA 129 Query: 129 NGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQ 183 G++ E + +E+ ++ + + L + + A ++RET L+ Sbjct: 130 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILR 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 240 >gi|92109564|ref|YP_571851.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802646|gb|ABE65019.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 231 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 78/227 (34%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 +++ + E+ L + + + + + D + Sbjct: 4 VEQTRTAAEIEDCLLGLAAEFGFTGLFGGIVPTRPAPLAELRSRILFQRFPAQWLDRYSR 63 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D + H P W + S+ +L G P+ Sbjct: 64 KGYVFRDPIIQHLFHERTPFTWHEGYKSCPQRSNVRLIQGEAAEFGLRDGYVVPISTIDG 123 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + F + A+ + + A + L NLT RE CL AG+ Sbjct: 124 EIVSLSFGGPGTLPASADLSVLNFAASYALGRHLHRIATWRRVNSNLTAREWDCLLWAGE 183 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI+ LG+S TV ++ +A KL AV++ AIA AIR + Sbjct: 184 GKTNWEISAILGISKSTVTKHIMAARAKLGAVSKAHAIAMAIRTKLL 230 >gi|296114148|ref|ZP_06832803.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295979224|gb|EFG85947.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 237 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 8/227 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + S ++ +L+ I ++ ++F + R + Y D Sbjct: 16 QNSENINQLNAEFRSILTKL--KHFVHTA--GLVHKTRVTECYLIDSTYPDDWMQHYIDN 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W S+ + + ++ + +G A P+ + Sbjct: 72 CYQNIDPVIATARHEFLPYGWGSVGVRNKSQKN---MMQEFQDIGFRSGYAVPLPVSPSM 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGD 187 V S + A Q ++++ +S +L++RE CL Sbjct: 129 LLLVGMASNDKEINFRDRTILQIAINQYHACYMQITNGGTSKEDCSLSDRERECLLWVAQ 188 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EI+ L +S +TV +L + KL A NRIQA+ +AI G I Sbjct: 189 GKNTLEISSILNISDNTVKYHLKNIMQKLGAHNRIQAVVQAINLGLI 235 >gi|6572977|gb|AAF17494.1|AF195615_2 transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 13/226 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + ++ F + P + C NY D D Sbjct: 22 DMQEFTAVTLRVLRELRFDFFAYGMCSVTPFMRPRTCMYGNYPEDWVQRYQAANYAVIDP 81 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H PI+W + + G+A P + G + Sbjct: 82 TVKHSKVSSAPILWSNELFRGCPD-----LWSEANDSNLCHGLAQPSFNAQGRVGMLSLA 136 Query: 136 SEFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSCLQLAGDG 188 + ++ + EA + LE + + + RE L+ DG Sbjct: 137 RKDNPISLQE-FEALKLMTKAFAAAIHEKISELESDVRVFNTDVEFSGRECDVLRWTADG 195 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 196 KTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|167564011|ref|ZP_02356927.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167571156|ref|ZP_02364030.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 16/244 (6%) Query: 1 MSENTLTGKKSSSLQ-ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDL 59 M+++ L S+ + ++ L I R+ F + + D + + + + NY + Sbjct: 1 MTQDILDQTSSAKTERDIHDILSRIAARL---GFDYFFYGTLSDMRKPENPVKTVSNYPM 57 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + D + H L+P+ W + + + G AG + Sbjct: 58 AWQEKYKSSGYIRIDPVVRHCGHRLIPLQWNDGICHCREQRN---FMEDARGHGLVAGAS 114 Query: 120 FPVRLGFHKNGYVIFTS-------EFLMLANEVIIEAHGACYQVITDFLELFKKRSS--A 170 FPV + + S + + +E R Sbjct: 115 FPVHSRHGEVSILSLASRSAGGTTSLSAKHAPATFAQGALAAAFVREGMERISNRPDHEP 174 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT RE CL+ G +S EIA LG+S + V ++ K D +R A+ KA+ Sbjct: 175 SAPLTHRELECLKWIAAGKSSWEIAMILGISENGVLYHVKKLMAKFDVQSRHLAVLKAMA 234 Query: 231 FGYI 234 G + Sbjct: 235 SGVV 238 >gi|241206852|ref|YP_002977948.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860742|gb|ACS58409.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 251 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 11/237 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICEL-HNYDLDSGDIPN 66 ++ S+ + + L I + L + + + + L + I Sbjct: 14 EECSNPEAVITELEQILRGCGFEYYGLPHHLPQSPLQQNPEPWAAALAGRWPEQWPQIYA 73 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVR 123 D + + P W+ ++ + ++ G G FP+ Sbjct: 74 AKKYALIDPMVRYLAHAQRPFRWREAMAAFRKDAYHRRMEQMMVDAFGHGLEDGYIFPIH 133 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTER 177 G + + + L+ I + L+L + A LT R Sbjct: 134 GRSGILGSLSLAGKPIELSPVEIALLEAVARKAFWRLLDLKGEAQALETVLPADTPLTRR 193 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L +G TS EI++ L +S HTV+ Y+ KL A NR A+A A R G I Sbjct: 194 EMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQHAVALAFRHGLI 250 >gi|218548547|ref|YP_002382338.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ATCC 35469] gi|218356088|emb|CAQ88705.1| DNA-binding transcriptional activator [Escherichia fergusonii ATCC 35469] Length = 251 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ +S +++ L +++ F Y++ P + + Y Sbjct: 29 QEMASAEDVFQELQFQTQKLE---FDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSYYQQH 85 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L N ++W Q G+ + L Sbjct: 86 NFLAIDPVLKPENFSQGHLLWDDALFS-----EAQPLWDAARAHGLRRGVTQYLMLSNRA 140 Query: 129 NGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQ 183 G++ E + +E+ ++ + + L + + A ++RET L+ Sbjct: 141 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILR 200 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 201 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 251 >gi|59940053|gb|AAX12565.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W ++E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + A LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G TS EIA LG++ TVN +L T K ++NR QAIA I G + Sbjct: 193 WASRGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAMGISNGIL 243 >gi|220921758|ref|YP_002497059.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946364|gb|ACL56756.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 244 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 1/233 (0%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 E + ++++ + + +L + + L T+ P ++ + Y + Sbjct: 11 ELLQSIHRTATPENVRDQLLKKLAGVGVEHVLLATLRICDAVPCDRRPTVFIGTYPDEWA 70 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D + W + + + G G P+ Sbjct: 71 RRYYARNYILHDPVVRGVAERASGFAWTDPDLIASDDREARRVLDEAGEFGLHEGFTLPL 130 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSC 181 V F E L L+ V + L L ++ A + L+ RE Sbjct: 131 LTLEGDTAGVSFVGERLDLSPAVRGMLTLVGTYALGQVLLLANGQAEALSEPLSPRERES 190 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ A DG + EI E +G+S H +L + KL +R A+A +R G I Sbjct: 191 LQWAADGKSDWEIGEAMGISEHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 243 >gi|222350143|emb|CAX32456.1| LuxR-type regulator [Rhizobium leguminosarum] Length = 251 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 76/237 (32%), Gaps = 11/237 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL--ICELHNYDLDSGDIPN 66 ++ S+ + + L I + + L + + + I Sbjct: 14 EECSNPEAVVTELEQILHGCGFEYYGLLRHLPQNPVQQNPESWAAALAGRWPEHWPRIYA 73 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFPVR 123 D + + P W+ + + + G G FP+ Sbjct: 74 AKKYALIDPMVRYLGHAQRPFRWREAMAAFHKDAHQRRMEQMMVDAFGHGLEDGYIFPIH 133 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTER 177 + + + L+ I + L+L + A LT R Sbjct: 134 GRNGTLASLSLAGKPIELSPVEIALLEAVARKAFWRLLDLKGEAPALETVLPADTPLTRR 193 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G I Sbjct: 194 EMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250 >gi|197263477|ref|ZP_03163551.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241732|gb|EDY24352.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 240 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 74/235 (31%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ + L ++ EV + + ++ + ++RE Sbjct: 126 PNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K + N+ Q A G I Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNPPNKTQIACYAAATGLI 240 >gi|76057938|emb|CAJ30486.1| PlaR protein [Burkholderia plantarii] Length = 240 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 70/230 (30%), Gaps = 12/230 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ + H + K F + P Q L+ Y Sbjct: 13 NTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + IIW R G+A G Sbjct: 73 EIDPTVRDGAASPNMIIWPDADAAEQPS-----LWRDARDFGMSVGVAQSSWAARGVFGL 127 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185 + L I + L + +A+ +LT+RE L Sbjct: 128 LTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKREREVLSWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 +G T+ EI E+L +S TV ++ + KL A N++QA + KAI G I Sbjct: 188 SEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVVKAIGMGLI 237 >gi|193066393|ref|ZP_03047441.1| regulatory protein SdiA [Escherichia coli E22] gi|192925978|gb|EDV80624.1| regulatory protein SdiA [Escherichia coli E22] Length = 240 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVCESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|13474964|ref|NP_106527.1| hypothetical protein mll8752 [Mesorhizobium loti MAFF303099] gi|14025713|dbj|BAB52313.1| mll8752 [Mesorhizobium loti MAFF303099] Length = 248 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 13/228 (5%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRR------QQLICELHNYDLDSGDIPNIL 68 ++L L A NF I P + Q + NY + + + Sbjct: 24 EQLFDLLSAF-----ALNFDCPWIAYGPLAPAQKVLKPAQADSAIMLNYPNEWKERYFKM 78 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + G+ I W + ++ + + + +G+ P+ Sbjct: 79 GYDKIDPIIKKSRKGVGAIRWSEVYKDASTTDNERRVLDEAATFGLKSGVTVPLHGPAGS 138 Query: 129 NGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAG 186 + F N + A + ++L+ RE C+ Sbjct: 139 FTIMSFAQPWDREFQNRTVTYLQLAALHFHVRVTKGTSSNALKQVQDLSLREKECILWIA 198 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S EI + LG+S +TVN +L +A KLD +R A KA G + Sbjct: 199 RGKSSWEIGKILGISGNTVNFHLKNAMRKLDTASRTVAAIKATSLGIV 246 >gi|163758001|ref|ZP_02165089.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284290|gb|EDQ34573.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 253 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 6/224 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S +L P+L +Q + A FA+ + I + L++ Sbjct: 35 AGSTADLFPKLVAMQRQCAAAGFAVMSAREQTLLAAGNLDITMKS---PGCDAMAGPLLK 91 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + L H +S PI++ + + ++ E G + FPV LG NG Sbjct: 92 SQMGFLLRHLDSSPRPILYAANSDAVPSPPPALPLMQTEEG---RTDLLFPVSLGAMGNG 148 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 Y+ F + +E++I+ H ++ + L L + A L ERE CLQL G+G Sbjct: 149 YIGFFGVDGAIDSELLIDLHRKSLAMMRETLRLAFGAAPVADKLNEREIECLQLVGNGMK 208 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SE I E+L LSVHTVNAYLGSAT KLDAVNRIQAIAK+IR G I Sbjct: 209 SEAIGERLNLSVHTVNAYLGSATTKLDAVNRIQAIAKSIRLGII 252 >gi|144900185|emb|CAM77049.1| regulatory protein, LuxR:Autoinducer-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 242 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 79/227 (34%), Gaps = 5/227 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ + L L + A + + +Y + Sbjct: 17 RADTAPALMSELKSALVHWGFPHMACGAFGEPERPLDDMSVPAVVVDYPEEWQKYYFEKN 76 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + +P W +++ + + + + GI PV Sbjct: 77 YVTIDPVITRACQAYVPYRWDQLRD---LTNPQKRMFKEATEAGLRHGITVPVHGPNGSI 133 Query: 130 GYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGD 187 S + + + A+ QV + + + + +A +LT RE CL + Sbjct: 134 FVASVASPHTDIDHLRSLSVANVLVTQVYSVLVGMRHPGAPSAPVSLTARERECLIWSAR 193 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S +I L +S +TVN +L +A KL A R+ AI KAIR G I Sbjct: 194 GKSSWDIGVILNISDNTVNFHLKNAMGKLKASTRVLAIVKAIRMGLI 240 >gi|320198610|gb|EFW73210.1| DNA-binding transcriptional activator SdiA [Escherichia coli EC4100B] Length = 240 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY + Sbjct: 14 LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVNY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|306850701|gb|ADN06870.1| transcriptional activator PhzR [Pseudomonas sp. CMR12a] Length = 241 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 72/232 (31%), Gaps = 14/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++S +E + FA T + P + NY Sbjct: 18 SQASDTEEFKGIAMGALQELDFDFFAYGTCSVT---PFMRPKTSIYSNYPEPWVQRYQAQ 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + H PI+W + + G+A P + Sbjct: 75 NYALIDPTVKHSKLSSAPILWGNELFRECPQ-----LWSEARDSNLCHGLAQPSFNAQGR 129 Query: 129 NGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSS--AARNLTERETSCL 182 G + ++ E EL SS + RE L Sbjct: 130 VGLLSLARRNKAISAEEFEALKPVTKAFAMAAHEKLSELENDDSSLNVQVEFSGRECDVL 189 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 190 RWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVALGYI 241 >gi|325293644|ref|YP_004279508.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061497|gb|ADY65188.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 238 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 2/220 (0%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD- 74 + L +Q ++A +++ T+ L + + D Sbjct: 19 DRPQWLAALQQVMQAFSYSYVTLLKLPSIRNAYALPIVVESSLPVWVVNAMTRDGELADC 78 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + S ++P W ++ S ++S L G + +G+ PV + F Sbjct: 79 PVIKRGASSMMPQYWSLDDKDINCGSLLEVSTLLRG-MGITSGLLVPVNGMDGNRHLMNF 137 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + +L+ + E + + L + S LT+RE ++ G TS EI Sbjct: 138 AGDCDVLSQGSLNELCMIALHALEAYDRLCRAGSKLPSPLTKRELDVVRWTAQGKTSVEI 197 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L +S HTVN Y+ +A KLD VNR Q +AK IR G I Sbjct: 198 AELLSISEHTVNTYMNNAIRKLDCVNRAQLVAKTIRLGLI 237 >gi|66277268|gb|AAY44565.1| LuxR-like protein [Aeromonas sp. ym2] Length = 260 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTDNHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS +IA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGDIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSRGIL 243 >gi|330811856|ref|YP_004356318.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379964|gb|AEA71314.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 237 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 77/237 (32%), Gaps = 12/237 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L +K S ++L L+ N + F + L P + L+NY + Sbjct: 6 DLLLRKLSCEKDLQTAYRLVLNFFNNQGFEYCAFAAYLGSPDKHTSKVNLNNYPYGWDRL 65 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D + H N LPI+W + R G V Sbjct: 66 YEQNGYASNDPLVAHCNQSSLPILWDETVFAHAPK-----LWRELNRQGLKYGWTQSVHD 120 Query: 125 GFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 + E G L K+ S A L+ R Sbjct: 121 EQGAHCSLFSLARSHCPIDIEEHYANLGYAIFASQRLHALASKKLSDALAIQPKCHLSPR 180 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ + +G T+ E+ L LS TVN ++ S KL+ N+I A+AKA + I Sbjct: 181 EIEVLRWSAEGKTASEVGRILCLSERTVNFHVCSCMRKLNVSNKISAVAKAAQIHVI 237 >gi|59940063|gb|AAX12570.1| LuxR-type transcriptional regulator [Aeromonas popoffii] Length = 260 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 13/225 (5%) Query: 22 HLIQNRIKAR----NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + I + Y + ++ + + D + Sbjct: 20 DRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHMLACDPII 79 Query: 78 FHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 LPI W ++ ++ + L GI+FP+ +NG + F + Sbjct: 80 QLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT 139 Query: 137 EFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQLAGDGY 189 +++++++ + + + + LT+RET CL A +G Sbjct: 140 AE-QASSDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGK 198 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 199 TSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|66277282|gb|AAY44572.1| LuxR-like protein [Aeromonas popoffii] Length = 260 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 9/211 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + Y + ++ + + D + LPI W Sbjct: 34 GYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNR 93 Query: 92 IQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 ++ ++ + L GI+FP+ +NG + F + +++++++ Sbjct: 94 LEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENGILSFITAE-QASSDLLLDSS 152 Query: 149 --AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + + + + LT+RET CL A +G TS EIA LG++ Sbjct: 153 PILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIACILGITER 212 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN +L T K ++NR QAIAK + G + Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|217419193|ref|ZP_03450700.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200253|ref|ZP_03795798.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|217398497|gb|EEC38512.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225927761|gb|EEH23803.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] Length = 236 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 66/221 (29%), Gaps = 9/221 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + ++ + FP I + NY + D + Sbjct: 21 QHVISVLTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAV 80 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 LP+ W + +S G + R G + + Sbjct: 81 KAALGSDLPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRT 135 Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + H +LT RET L+ DG T+ E Sbjct: 136 QDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYE 195 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 196 IALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236 >gi|324113634|gb|EGC07609.1| autoinducer binding domain-containing protein [Escherichia fergusonii B253] Length = 251 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ +S +++ L L +++ F Y++ P + + Y Sbjct: 29 QEMASAEDVFQELQLQTQKLE---FDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSYYQQH 85 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L N ++W Q G+ + L Sbjct: 86 NFLAIDPVLKPENFSQGHLLWDDALFS-----EAQPLWDAARAHGLRRGVTQYLMLSNRA 140 Query: 129 NGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQ 183 G++ E + +E+ ++ + + + + + A ++RET L+ Sbjct: 141 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARVQHEMVMTPAMRFSKRETEILR 200 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 201 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 251 >gi|126458323|ref|YP_001075604.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134283391|ref|ZP_01770091.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167723653|ref|ZP_02406889.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167819785|ref|ZP_02451465.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167849631|ref|ZP_02475139.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167898230|ref|ZP_02485632.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167906588|ref|ZP_02493793.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|237510070|ref|ZP_04522785.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242312988|ref|ZP_04812005.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254190270|ref|ZP_04896779.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254193498|ref|ZP_04899932.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254262913|ref|ZP_04953778.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254300529|ref|ZP_04967975.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|126232091|gb|ABN95504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134245140|gb|EBA45234.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|156105358|gb|ABU49178.1| BpsR2 [Burkholderia pseudomallei] gi|157810414|gb|EDO87584.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937947|gb|EDO93617.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|169650251|gb|EDS82944.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|235002275|gb|EEP51699.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242136227|gb|EES22630.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254213915|gb|EET03300.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 236 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 65/221 (29%), Gaps = 9/221 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + ++ + FP I + NY + D + Sbjct: 21 QHVISVLTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAV 80 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 P+ W + +S G + R G + + Sbjct: 81 KAALGSDRPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRT 135 Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + H +LT RET L+ DG T+ E Sbjct: 136 QDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYE 195 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 196 IALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236 >gi|330822376|ref|YP_004362597.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] gi|327374213|gb|AEA65567.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] Length = 237 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 16/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ L + F + + FP +Y + Sbjct: 15 AKSGHDVFRELSAASREL---GFEHCSFGMRVPFPISNPRYVLQSDYPEAWKERYIRHNY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H + LP+ WQ+ + E G P G Sbjct: 72 FAVDPTVQHGLTQSLPLTWQADGQTESTE-----FWEEAAHHGLRYGWCMPACCQNGTIG 126 Query: 131 YVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 V + ++ A + L L + LT RE L+ Sbjct: 127 LVTMARSDEPIEERELLCKEYRMLWLASAVNSAMNAHL-LAQSAPEYEVELTCREREALK 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T EI + + TV +L + KL+A+N+ +A KA G + Sbjct: 186 WSAAGKTYVEIGMIMSVDDRTVKFHLVNTMRKLNAMNKTEAAVKAAMLGLL 236 >gi|283785661|ref|YP_003365526.1| regulatory protein [Citrobacter rodentium ICC168] gi|282949115|emb|CBG88722.1| regulatory protein [Citrobacter rodentium ICC168] Length = 240 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ +S +++ L ++ F Y + P + I +Y Sbjct: 14 LLRFQEMASAKDVYSELQRQAQLLE---FDYYALYVRHPVPFTRPRISFQTSYPEAWVSR 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D L I + + + Q G+ V L Sbjct: 71 YQAENYSAIDPVLK-----PENFIQGHLPWSDDLFNDAQTLWDAARAHGLRKGVTQCVML 125 Query: 125 GFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ + +EV + + + L + + ++RE Sbjct: 126 PNRALGFLSVVRASLRSNPIDDDEVELRLQLLVRESLAALSRLEDEMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 186 EILKWTAEGKTSYEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGLI 240 >gi|53722204|ref|YP_111189.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76817623|ref|YP_335301.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126444655|ref|YP_001062648.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|52212618|emb|CAH38644.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76582096|gb|ABA51570.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126224146|gb|ABN87651.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] Length = 234 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 65/221 (29%), Gaps = 9/221 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + ++ + FP I + NY + D + Sbjct: 19 QHVISVLTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAV 78 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 P+ W + +S G + R G + + Sbjct: 79 KAALGSDRPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRT 133 Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + H +LT RET L+ DG T+ E Sbjct: 134 QDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYE 193 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 194 IALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 234 >gi|320641764|gb|EFX11152.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. G5101] Length = 240 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W + Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQSLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|312967117|ref|ZP_07781335.1| regulatory protein sdiA [Escherichia coli 2362-75] gi|312288581|gb|EFR16483.1| regulatory protein sdiA [Escherichia coli 2362-75] Length = 228 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 2 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 58 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 59 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 113 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 114 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 173 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 174 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 228 >gi|84684996|ref|ZP_01012895.1| autoinducer-binding transcriptional regulator LuxR [Maritimibacter alkaliphilus HTCC2654] gi|84666728|gb|EAQ13199.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2654] Length = 225 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 14/231 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K + SL+ + + + + +NS + Y D + Sbjct: 2 KDADSLEAFQAATEQVCDIYGVLHCVYHWVNSDGER-------FGAGTYSSVWVDRYLEM 54 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D +F P W+ + T + + L G + P+ + Sbjct: 55 DYLRMDPVIFGCFQRFTPANWKDLDWTTKAARA--MLDDALKHGLGNQGYSIPLHGPQGQ 112 Query: 129 NGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + I+ ++ LE A+ +L+ RE + ++ Sbjct: 113 FALFTLNHQAEDDDWAAFIDINGRDLIVLAHEFNRRALEFEGAEGIASPSLSPRELAAIR 172 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + + A +LG+S HT+ Y+ SA KL A+N A+A+A+ G I Sbjct: 173 CLARGLSRAQAAAELGISEHTLRVYIESARHKLGALNTTHAVARALSTGII 223 >gi|188491931|ref|ZP_02999201.1| regulatory protein SdiA [Escherichia coli 53638] gi|260855896|ref|YP_003229787.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|331653323|ref|ZP_08354328.1| regulatory protein SdiA [Escherichia coli M718] gi|188487130|gb|EDU62233.1| regulatory protein SdiA [Escherichia coli 53638] gi|257754545|dbj|BAI26047.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|315617861|gb|EFU98459.1| regulatory protein sdiA [Escherichia coli 3431] gi|323152751|gb|EFZ39023.1| regulatory protein sdiA [Escherichia coli EPECa14] gi|331049421|gb|EGI21493.1| regulatory protein SdiA [Escherichia coli M718] Length = 240 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W + Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|117624058|ref|YP_852971.1| DNA-binding transcriptional activator SdiA [Escherichia coli APEC O1] gi|161486200|ref|NP_754222.2| DNA-binding transcriptional activator SdiA [Escherichia coli CFT073] gi|162138422|ref|YP_541121.2| DNA-binding transcriptional activator SdiA [Escherichia coli UTI89] gi|191173269|ref|ZP_03034799.1| regulatory protein SdiA [Escherichia coli F11] gi|218558774|ref|YP_002391687.1| DNA-binding transcriptional activator SdiA [Escherichia coli S88] gi|218699520|ref|YP_002407149.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI39] gi|227885657|ref|ZP_04003462.1| LuxR family protein [Escherichia coli 83972] gi|300982244|ref|ZP_07175956.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300993973|ref|ZP_07180620.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|301050730|ref|ZP_07197588.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|306814260|ref|ZP_07448426.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|331647509|ref|ZP_08348601.1| regulatory protein SdiA [Escherichia coli M605] gi|115513182|gb|ABJ01257.1| DNA-binding transcriptional activator [Escherichia coli APEC O1] gi|190906386|gb|EDV65995.1| regulatory protein SdiA [Escherichia coli F11] gi|218365543|emb|CAR03270.1| DNA-binding transcriptional activator [Escherichia coli S88] gi|218369506|emb|CAR17273.1| DNA-binding transcriptional activator [Escherichia coli IAI39] gi|222033657|emb|CAP76398.1| Regulatory protein sdiA [Escherichia coli LF82] gi|227837230|gb|EEJ47696.1| LuxR family protein [Escherichia coli 83972] gi|281178978|dbj|BAI55308.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE15] gi|294493959|gb|ADE92715.1| regulatory protein SdiA [Escherichia coli IHE3034] gi|300297547|gb|EFJ53932.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|300307314|gb|EFJ61834.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300406419|gb|EFJ89957.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|305852419|gb|EFM52870.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|307553930|gb|ADN46705.1| DNA-binding transcriptional activator [Escherichia coli ABU 83972] gi|307626607|gb|ADN70911.1| DNA-binding transcriptional activator SdiA [Escherichia coli UM146] gi|312946508|gb|ADR27335.1| DNA-binding transcriptional activator SdiA [Escherichia coli O83:H1 str. NRG 857C] gi|315286610|gb|EFU46043.1| autoinducer binding domain protein [Escherichia coli MS 110-3] gi|315290297|gb|EFU49675.1| autoinducer binding domain protein [Escherichia coli MS 153-1] gi|315296532|gb|EFU55829.1| autoinducer binding domain protein [Escherichia coli MS 16-3] gi|320194372|gb|EFW69003.1| DNA-binding transcriptional activator SdiA [Escherichia coli WV_060327] gi|323186796|gb|EFZ72116.1| regulatory protein sdiA [Escherichia coli RN587/1] gi|323952411|gb|EGB48284.1| autoinducer binding domain-containing protein [Escherichia coli H252] gi|323956313|gb|EGB52056.1| autoinducer binding domain-containing protein [Escherichia coli H263] gi|324007279|gb|EGB76498.1| autoinducer binding domain protein [Escherichia coli MS 57-2] gi|324013560|gb|EGB82779.1| autoinducer binding domain protein [Escherichia coli MS 60-1] gi|330911724|gb|EGH40234.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator [Escherichia coli AA86] gi|331043233|gb|EGI15371.1| regulatory protein SdiA [Escherichia coli M605] Length = 240 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|300935891|ref|ZP_07150848.1| autoinducer binding domain protein [Escherichia coli MS 21-1] gi|300458941|gb|EFK22434.1| autoinducer binding domain protein [Escherichia coli MS 21-1] Length = 240 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKKFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|86359580|ref|YP_471472.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86283682|gb|ABC92745.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 251 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 76/230 (33%), Gaps = 14/230 (6%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICE-----LHNYDLDSGDIPNILIETYG 73 + ++ + F Y + L QQ I + I Sbjct: 21 AVVAELEQVLHGSGFEYYGLLRHLQQNPAQQNIELRAAPLAGRWPEQWLQIYAAKKYVRI 80 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNG 130 D + + P W+ ++ + ++ G G FP+ G Sbjct: 81 DPMVRYLAHAQRPFRWRESMAAFDGDAHQRRMEQMMVDAFGHGLEDGYLFPIHGRNGILG 140 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQL 184 + + + L+ I + L+L + LT RE L Sbjct: 141 SLTLGGKPIDLSPVEIALLEAVARKSFWRLLDLTGEAEALETVLPTETPLTRREMEILHY 200 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G I Sbjct: 201 LAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGLI 250 >gi|59940059|gb|AAX12568.1| LuxR-type transcriptional regulator [Aeromonas allosaccharophila] Length = 260 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 85/231 (36%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TV +L T K ++ R QAIAK + G + Sbjct: 193 WASEGKTSSEIACILGITERTVIYHLNQVTRKTGSMTRYQAIAKGVSSGIL 243 >gi|301018234|ref|ZP_07182749.1| autoinducer binding domain protein [Escherichia coli MS 69-1] gi|300399821|gb|EFJ83359.1| autoinducer binding domain protein [Escherichia coli MS 69-1] Length = 240 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLEYD---YYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIFTSEF----LMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F+ +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRSSVREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|319943177|ref|ZP_08017460.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319743719|gb|EFV96123.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 236 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 17/234 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 ++G +S + IQ +A F + P + L++Y D Sbjct: 12 VSGDSASERE----VFECIQRASRALGFQHVSYGFQAPLPLSRPKFTWLNDYPGDWQTHY 67 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + P IW V E G + Sbjct: 68 MDAGYPAVDPRIIRARQSSEPFIWNETLFSEVPE-----LWADLQARGIQHGWSQSTLHE 122 Query: 126 FHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 G + + ++ + ++ + + + +S A +LTERE Sbjct: 123 PGGIGMLSLCRSTPITEQDLQTRLQHMQWLALLAHKAFSKLIRA--RIASNAPSLTEREL 180 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ DG ++++IAE L LS +TV+ ++ ++ KLD N+ A+ +A+ G Sbjct: 181 EVLRWTADGKSAQDIAEILLLSKNTVDFHIRNSINKLDVPNKTAAVVRAVLLGL 234 >gi|227821018|ref|YP_002824988.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340017|gb|ACP24235.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 3/221 (1%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 ++ L I + R F + I + Q L ++ ++ + G Sbjct: 27 DDVKRVLDQISDAFGFRGFMVLAIPDSGCHSLAAQ--ALLTSWPMEFLRRYDSAGLIEGS 84 Query: 75 DFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + +P + + + ++ G+ ++ + G+ PV + Sbjct: 85 PVIQRLRRSTIPFTYDAHLLARRRVDGKGEAAISVFEAAGMPRGLYLPVHDAKGGRAAIA 144 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F + +++++ + + + + E+ +L+ RE CL+ A G T+ E Sbjct: 145 FGGDREVVSSDEMQALNFWAGLLYSRLSEVRTHDRRRPGSLSRREIECLRWAAAGKTTVE 204 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A + LS +TVN YL AT KLD+VNR+Q +AKA+R G I Sbjct: 205 MARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAMRAGLI 245 >gi|190893853|ref|YP_001980395.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190699132|gb|ACE93217.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 251 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 76/230 (33%), Gaps = 14/230 (6%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQ-----QLICELHNYDLDSGDIPNILIETYG 73 ++ ++ + F Y + L Q + + I Sbjct: 21 AVVNELEQVLHGSGFEYYGLLRHLQQTPAQQNSELRAAPLAGRWPERWLQIYAAKKYIRI 80 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNG 130 D + + P W+ ++ + ++ G G FP+ G Sbjct: 81 DPMVRYLTHAQRPFRWRESMAAFNSDAHRRRMEQMMVDAFGHGLEDGYLFPIHGRNGILG 140 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQL 184 + + L+ I + LEL + A LT RE L Sbjct: 141 SLSLGGRPIELSPVEIALLEAVARKTFWRLLELTGEAEALETVLPAETPLTRREMEILHY 200 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G I Sbjct: 201 LAEGMTSMEISKMLKISNHTVDWYMNGLQGKLKAKNRQQAVALAFRHGLI 250 >gi|237705872|ref|ZP_04536353.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] gi|26108586|gb|AAN80789.1|AE016762_42 Regulatory protein sdiA [Escherichia coli CFT073] gi|91072709|gb|ABE07590.1| regulatory protein SdiA [Escherichia coli UTI89] gi|226900629|gb|EEH86888.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] Length = 244 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 18 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 74 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 75 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 130 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 190 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|45453489|gb|AAS65458.1| quorum sensing transcriptional activator [Burkholderia thailandensis] Length = 239 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 14/238 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W G+A Sbjct: 64 ERYQEMNYLEVDPTVRDGALSSNMIVWPEASANDATT-----LWSDARDHGLAVGVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176 G + L + I ++A+ + + + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ AI G I Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVNAIAMGLI 236 >gi|291616969|ref|YP_003519711.1| SdiA [Pantoea ananatis LMG 20103] gi|291151999|gb|ADD76583.1| SdiA [Pantoea ananatis LMG 20103] gi|327393397|dbj|BAK10819.1| cell division activating regulatory protein SdiA [Pantoea ananatis AJ13355] Length = 240 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 77/238 (32%), Gaps = 13/238 (5%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 +E + ++ Q+L L Q+ I++ F + P + + Y Sbjct: 11 TETENHFQALATTQQLKGLL---QDYIQSLGFDYFAFFIQHRVPFTRPRVYLHDTYPKLW 67 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L + W + E + +G + Sbjct: 68 IKRYKEQNYYAIDPVLQLCLRSGKGVEWTPELFSSAKE-----MWQDACNFGLLSGFSCS 122 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTE 176 G + S+ + +E + + L L ++ + A + ++ Sbjct: 123 AMASNRAVGILSIGSKRPFITGSRRVELEVKLHFLAEQSLSLLERLNDEALMVQGNDFSQ 182 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ +G TS+EI+ L +S HTVN Y + + + N+ Q A G I Sbjct: 183 RELEILRWTAEGKTSQEISLILSISEHTVNFYQKNMKKRFNVSNKTQIACYAAAIGLI 240 >gi|170683439|ref|YP_001743327.1| DNA-binding transcriptional activator SdiA [Escherichia coli SMS-3-5] gi|256017886|ref|ZP_05431751.1| DNA-binding transcriptional activator SdiA [Shigella sp. D9] gi|307314177|ref|ZP_07593787.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|309795974|ref|ZP_07690387.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|170521157|gb|ACB19335.1| regulatory protein SdiA [Escherichia coli SMS-3-5] gi|306906146|gb|EFN36664.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|308120424|gb|EFO57686.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|315061216|gb|ADT75543.1| DNA-binding transcriptional activator [Escherichia coli W] gi|323378207|gb|ADX50475.1| transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323968333|gb|EGB63740.1| autoinducer binding domain-containing protein [Escherichia coli M863] gi|327253047|gb|EGE64701.1| regulatory protein sdiA [Escherichia coli STEC_7v] Length = 240 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|218695523|ref|YP_002403190.1| DNA-binding transcriptional activator SdiA [Escherichia coli 55989] gi|300904802|ref|ZP_07122630.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|218352255|emb|CAU98011.1| DNA-binding transcriptional activator [Escherichia coli 55989] gi|300403316|gb|EFJ86854.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|315257253|gb|EFU37221.1| autoinducer binding domain protein [Escherichia coli MS 85-1] Length = 240 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 82/235 (34%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIEFQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F+ L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|157161388|ref|YP_001458706.1| DNA-binding transcriptional activator SdiA [Escherichia coli HS] gi|170019746|ref|YP_001724700.1| DNA-binding transcriptional activator SdiA [Escherichia coli ATCC 8739] gi|218689909|ref|YP_002398121.1| DNA-binding transcriptional activator SdiA [Escherichia coli ED1a] gi|218705411|ref|YP_002412930.1| DNA-binding transcriptional activator SdiA [Escherichia coli UMN026] gi|300899169|ref|ZP_07117448.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300928947|ref|ZP_07144451.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331673434|ref|ZP_08374202.1| regulatory protein SdiA [Escherichia coli TA280] gi|331683468|ref|ZP_08384069.1| regulatory protein SdiA [Escherichia coli H299] gi|157067068|gb|ABV06323.1| regulatory protein SdiA [Escherichia coli HS] gi|169754674|gb|ACA77373.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|218427473|emb|CAR08247.1| DNA-binding transcriptional activator [Escherichia coli ED1a] gi|218432508|emb|CAR13401.1| DNA-binding transcriptional activator [Escherichia coli UMN026] gi|300357228|gb|EFJ73098.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300463101|gb|EFK26594.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331069632|gb|EGI41019.1| regulatory protein SdiA [Escherichia coli TA280] gi|331079683|gb|EGI50880.1| regulatory protein SdiA [Escherichia coli H299] Length = 240 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F+ L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|331663414|ref|ZP_08364324.1| regulatory protein SdiA [Escherichia coli TA143] gi|323977903|gb|EGB72989.1| autoinducer binding domain-containing protein [Escherichia coli TW10509] gi|331059213|gb|EGI31190.1| regulatory protein SdiA [Escherichia coli TA143] Length = 240 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|126640216|ref|YP_001083200.1| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 198 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 9/200 (4%) Query: 41 ALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES 100 + L+NY D + H L P++W S +T E Sbjct: 2 QSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEK 61 Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQV 156 G A R G + L+ + + V Sbjct: 62 D---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQYTNMYWLTQTV 118 Query: 157 ITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + ++ A NL T RE L+ +G TS EIA+ LG++ TVN +L ++ Sbjct: 119 HSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQ 178 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ N+I A +A+ G + Sbjct: 179 KLNVNNKISAAIRAVMLGLL 198 >gi|301029367|ref|ZP_07192464.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301645566|ref|ZP_07245495.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|307138583|ref|ZP_07497939.1| DNA-binding transcriptional activator SdiA [Escherichia coli H736] gi|331642538|ref|ZP_08343673.1| regulatory protein SdiA [Escherichia coli H736] gi|299877793|gb|EFI86004.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301076098|gb|EFK90904.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|323186308|gb|EFZ71658.1| regulatory protein sdiA [Escherichia coli 1357] gi|323948203|gb|EGB44191.1| autoinducer binding domain-containing protein [Escherichia coli H120] gi|324017952|gb|EGB87171.1| autoinducer binding domain protein [Escherichia coli MS 117-3] gi|324118970|gb|EGC12859.1| autoinducer binding domain-containing protein [Escherichia coli E1167] gi|331039336|gb|EGI11556.1| regulatory protein SdiA [Escherichia coli H736] Length = 240 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLEYD---YYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|194434963|ref|ZP_03067206.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|194416798|gb|EDX32924.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|320178182|gb|EFW53159.1| DNA-binding transcriptional activator SdiA [Shigella boydii ATCC 9905] gi|332095461|gb|EGJ00482.1| regulatory protein sdiA [Shigella dysenteriae 155-74] Length = 240 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|74311738|ref|YP_310157.1| DNA-binding transcriptional activator SdiA [Shigella sonnei Ss046] gi|82543616|ref|YP_407563.1| DNA-binding transcriptional activator SdiA [Shigella boydii Sb227] gi|157156210|ref|YP_001463220.1| DNA-binding transcriptional activator SdiA [Escherichia coli E24377A] gi|187730097|ref|YP_001879705.1| DNA-binding transcriptional activator SdiA [Shigella boydii CDC 3083-94] gi|193071152|ref|ZP_03052076.1| regulatory protein SdiA [Escherichia coli E110019] gi|194439563|ref|ZP_03071636.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300822312|ref|ZP_07102453.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|300917358|ref|ZP_07134027.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|73855215|gb|AAZ87922.1| transcriptional regulator of ftsQAZ gene cluster [Shigella sonnei Ss046] gi|81245027|gb|ABB65735.1| transcriptional regulator of ftsQAZ gene cluster [Shigella boydii Sb227] gi|157078240|gb|ABV17948.1| regulatory protein SdiA [Escherichia coli E24377A] gi|187427089|gb|ACD06363.1| regulatory protein SdiA [Shigella boydii CDC 3083-94] gi|192955547|gb|EDV86026.1| regulatory protein SdiA [Escherichia coli E110019] gi|194421472|gb|EDX37486.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300415404|gb|EFJ98714.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|300525195|gb|EFK46264.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|309702211|emb|CBJ01527.1| regulatory protein [Escherichia coli ETEC H10407] gi|320176080|gb|EFW51148.1| DNA-binding transcriptional activator SdiA [Shigella dysenteriae CDC 74-1112] gi|323165288|gb|EFZ51076.1| regulatory protein sdiA [Shigella sonnei 53G] gi|323174570|gb|EFZ60191.1| regulatory protein sdiA [Escherichia coli LT-68] gi|323937191|gb|EGB33471.1| autoinducer binding domain-containing protein [Escherichia coli E1520] gi|323972721|gb|EGB67922.1| autoinducer binding domain-containing protein [Escherichia coli TA007] gi|332343642|gb|AEE56976.1| regulatory protein SdiA [Escherichia coli UMNK88] Length = 240 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAAHAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|332278913|ref|ZP_08391326.1| regulatory protein sdiA [Shigella sp. D9] gi|332101265|gb|EGJ04611.1| regulatory protein sdiA [Shigella sp. D9] Length = 244 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ Y++ P + + NY Sbjct: 18 LLRFQRMEAAEEVYHEIELQAQQLEYD---YYSLCVRHPVPFTRPKVAFYTNYPESWVSY 74 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 75 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 130 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 190 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|59940037|gb|AAX12557.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 9/234 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + + + S ++ + Y L +++ + + Sbjct: 11 EHLTMVTDESRLAEVMSRFTVGIGYDDYRFAVILPTSMQRRKEVLFNQCPDSWVQAYTVN 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + + LPI W + E ++ + L GI+FP+ Sbjct: 71 NMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGATG 130 Query: 128 KNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFK---KRSSAARNLTERETS 180 ++G + F + ++++++E + + + + + LT+RET Sbjct: 131 ESGILSFIT-RERASSDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALTDRETE 189 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 190 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|293405402|ref|ZP_06649394.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298381046|ref|ZP_06990645.1| regulatory protein sdiA [Escherichia coli FVEC1302] gi|291427610|gb|EFF00637.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298278488|gb|EFI20002.1| regulatory protein sdiA [Escherichia coli FVEC1302] Length = 244 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 18 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 74 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 75 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129 Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F+ L++E+ ++ + + + L + + N ++RE Sbjct: 130 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 190 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|300951540|ref|ZP_07165374.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|300956569|ref|ZP_07168849.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300316616|gb|EFJ66400.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300449215|gb|EFK12835.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|323940421|gb|EGB36612.1| autoinducer binding domain-containing protein [Escherichia coli E482] gi|332089650|gb|EGI94752.1| regulatory protein sdiA [Shigella boydii 5216-82] Length = 240 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + +++ Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIEFQAQQLEYD---YYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F+ L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|191168286|ref|ZP_03030079.1| regulatory protein SdiA [Escherichia coli B7A] gi|194429919|ref|ZP_03062429.1| regulatory protein SdiA [Escherichia coli B171] gi|218554500|ref|YP_002387413.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI1] gi|260844320|ref|YP_003222098.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|260868508|ref|YP_003234910.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|293410275|ref|ZP_06653851.1| conserved hypothetical protein [Escherichia coli B354] gi|300818660|ref|ZP_07098868.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300925008|ref|ZP_07140932.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|301327706|ref|ZP_07220912.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|331668610|ref|ZP_08369458.1| regulatory protein SdiA [Escherichia coli TA271] gi|331677801|ref|ZP_08378476.1| regulatory protein SdiA [Escherichia coli H591] gi|190901658|gb|EDV61414.1| regulatory protein SdiA [Escherichia coli B7A] gi|194412008|gb|EDX28320.1| regulatory protein SdiA [Escherichia coli B171] gi|218361268|emb|CAQ98852.1| DNA-binding transcriptional activator [Escherichia coli IAI1] gi|257759467|dbj|BAI30964.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|257764864|dbj|BAI36359.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|284921829|emb|CBG34902.1| regulatory protein [Escherichia coli 042] gi|291470743|gb|EFF13227.1| conserved hypothetical protein [Escherichia coli B354] gi|300418843|gb|EFK02154.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|300528832|gb|EFK49894.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300845750|gb|EFK73510.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|323158600|gb|EFZ44614.1| regulatory protein sdiA [Escherichia coli E128010] gi|323180833|gb|EFZ66373.1| regulatory protein sdiA [Escherichia coli 1180] gi|331063804|gb|EGI35715.1| regulatory protein SdiA [Escherichia coli TA271] gi|331074261|gb|EGI45581.1| regulatory protein SdiA [Escherichia coli H591] Length = 240 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|215487121|ref|YP_002329552.1| DNA-binding transcriptional activator SdiA [Escherichia coli O127:H6 str. E2348/69] gi|215265193|emb|CAS09582.1| DNA-binding transcriptional activator [Escherichia coli O127:H6 str. E2348/69] Length = 240 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTSEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|157145292|ref|YP_001452611.1| DNA-binding transcriptional activator SdiA [Citrobacter koseri ATCC BAA-895] gi|157082497|gb|ABV12175.1| hypothetical protein CKO_01029 [Citrobacter koseri ATCC BAA-895] Length = 240 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ ++ +++ L +++ + Y + P + I Y Sbjct: 18 QEMATAEDVYTELQHQTQQLE---YDYYALCVRHPVPFTRPKISVHTTYPQAWVAHYQSE 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + S Q G + L Sbjct: 75 NYFSIDPVLK-----PENFRQGHLAWNDALFSEAQSLWDAARAHGLRRGATQCLMLPNRA 129 Query: 129 NGYVIFTS---EFLMLANEVI-IEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQ 183 G++ + A++ I + + ++ L + + ++RE L+ Sbjct: 130 LGFLSVSRASARHAPFAHDEIELRLQLLVRESLSALTRLEDEMVMTPEMRFSKREKEILK 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 190 WTAEGKTSSEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|312115398|ref|YP_004012994.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311220527|gb|ADP71895.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii ATCC 17100] Length = 251 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 76/235 (32%), Gaps = 8/235 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + S +E+S + I NY D + Sbjct: 12 DANAAKSSKEVSALFGKALAVFGYDRYCYSLITDHPSLGLNAGHGLVC-NYPDDWMEHYR 70 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + D + S P W S+ + + GIA PV Sbjct: 71 LNQYEKKDPVPQYGISASRPFTWASVVAQRKWHPDQMKVMHEAEEARLCDGIAVPVCGVN 130 Query: 127 HKNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKRSSAARNL-----TERET 179 + S ++ + ++ + Q F EL K + NL TERE Sbjct: 131 GELAGFGIASSHGGVSPDRTLLHKVQALAIQFHLAFTELEKIETPLTENLAEVYLTEREK 190 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + A +G + IAE LG+S TV ++ + KL+A R A KAIR G I Sbjct: 191 EIMSWAAEGKSDSVIAEILGVSHSTVRFHMNNVFKKLNANERTLATVKAIRHGLI 245 >gi|59940083|gb|AAX12580.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSAIL 243 >gi|209919338|ref|YP_002293422.1| DNA-binding transcriptional activator SdiA [Escherichia coli SE11] gi|293446298|ref|ZP_06662720.1| regulatory protein sdiA [Escherichia coli B088] gi|209912597|dbj|BAG77671.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE11] gi|291323128|gb|EFE62556.1| regulatory protein sdiA [Escherichia coli B088] Length = 244 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 18 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 74 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 75 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 130 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 190 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|90422223|ref|YP_530593.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104237|gb|ABD86274.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 245 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 70/226 (30%), Gaps = 2/226 (0%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++S + L + R+F + ++ L ++ Sbjct: 20 QTTTSPRALIDAVRDAAAAYGYRSFVIAAAPKLACNAFDKR--VLLRHWPEAWFGQYLQD 77 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D H W + + + + G P+ Sbjct: 78 NYQDHDPIAAHARQQTRAFCWSDAPWDRSDKKTAAVMDCAAHDYDMRRGFCVPIFGMRGY 137 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + F + + + + + + + L+ RE + A G Sbjct: 138 EAAISFGGPEIDASPAATAAMELIAIYAMNQLMTMREPPARRQTTLSPREREVVAWAAVG 197 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ + A L +S TVN ++ SA KLDA + QA+ ++IR G I Sbjct: 198 KTAWDTARILAISTDTVNKHMASAMRKLDACTKTQAVVESIRRGEI 243 >gi|116254365|ref|YP_770203.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115259013|emb|CAK10122.1| LuxR-family regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 251 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 75/231 (32%), Gaps = 14/231 (6%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLIC-----ELHNYDLDSGDIPNILIETY 72 + ++ + F Y + L QQ + I Sbjct: 20 EAVVTELEQILHGCGFEYYGLPRHLPQTPMQQNPEPWAAALAGRWPEQWPHIYTAKKYAL 79 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKN 129 D + + P W+ ++ + ++ G G FP+ Sbjct: 80 IDPMVRYLAHAQRPFRWREAMAAFRKDAYHRRMEQMMVDAFGHGLEDGYIFPIHGRNGIL 139 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQ 183 + + + L+ I + L+L + A LT RE L Sbjct: 140 ASLSLAGKPIELSPVEIALLEAVARKAFWRLLDLKGEAQALETVLPADTPLTRREMEILH 199 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G I Sbjct: 200 YLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250 >gi|167839810|ref|ZP_02466494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 236 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 9/219 (4%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 + ++ + FP I + NY + D + Sbjct: 23 VISVLTRAAATLGYEYAAYGMRRPFPISNPQILMVSNYPARWQERYIEARFANVDGAVKA 82 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ W + +S G + R G + + Sbjct: 83 ALGSDRPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLSLSRTQG 137 Query: 140 MLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + H +LT RET L+ DG T+ EIA Sbjct: 138 PIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIA 197 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 198 LILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236 >gi|293415226|ref|ZP_06657869.1| regulatory protein sdiA [Escherichia coli B185] gi|291432874|gb|EFF05853.1| regulatory protein sdiA [Escherichia coli B185] Length = 244 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L ++ + Y++ P + + NY Sbjct: 18 LLRFQRMEAAEEVYHEIELQAQLLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 74 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 75 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 130 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 190 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|110681100|ref|YP_684107.1| LuxR family transcription regulator [Roseobacter denitrificans OCh 114] gi|109457216|gb|ABG33421.1| transcription regulator, LuxR family, putative [Roseobacter denitrificans OCh 114] Length = 248 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 4/204 (1%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + ++ ++ P + L Y D + P W Sbjct: 39 VSYHSDDAQ--LPGSKPLGIVSDGYPEGWVCEYLQSELFRVDPIPQLASILSRPFRWSEA 96 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAH 150 + + G+ ++ G+A V +N YV F + L + I E Sbjct: 97 PKLMRLSPEGERYMQTLAQSGLGDGVAMQVYGPNMRNAYVGLGFGKQDPDLTADEIFELQ 156 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A + EL + R A +L+ RE LQ G ++ IAE LG+S HTV+ Sbjct: 157 CAAQIAHIRYCELTEFRQRVAESLSPREVEILQWIARGKSNSVIAEILGISRHTVDTITR 216 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R A + + G + Sbjct: 217 RIFEKLDVNDRTTAAIRGLGSGLV 240 >gi|238023440|ref|YP_002907673.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] gi|237880493|gb|ACR32822.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] Length = 235 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 14/230 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S S + + +L +++ F P + + NY + + Sbjct: 14 SDSSRVVFDKLVGYASQL---GFDYCCYGFRSPLPVGGESVKVFDNYPNGWMEHYRHMGY 70 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + + I W ES + GIA P G Sbjct: 71 IDVDPTVEKAMTCSQTICWPGFD-----ESKQSAFWQDARDHGLKVGIAQPSWSARGAFG 125 Query: 131 YVIFTSEFLMLANEVI----IEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQL 184 + + + ++ V + AA +LTERE L+ Sbjct: 126 LLSLARGEGEIDGHELKRLSLQLSWITNAVHSAMTAHVFDSLGLGAAISLTERERQVLRW 185 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G + +I+EKL +SV TVN ++G K A N++QA A+A+ + Sbjct: 186 TVEGLNAFDISEKLNISVSTVNWHIGKVLAKFGATNKVQAAARAVALNLL 235 >gi|167839488|ref|ZP_02466172.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia thailandensis MSMB43] Length = 239 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 14/238 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISRPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W G+A Sbjct: 64 ERYQEMNYLEVDPTVREGALSSNMIVWPEASACDATS-----LWSDARDHGLAVGVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176 G + L I ++ + + + + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTIAEINHLTLQTNWLANMSHSLMSRFLVPKLAPESGVALTH 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + LG+S TVN ++ + KL A N++QA+ KAI G + Sbjct: 179 REREVLCWTGEGKTACEIGQILGISERTVNFHVNNVLDKLGATNKVQAVVKAIAMGLV 236 >gi|170752129|ref|YP_001758389.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658651|gb|ACB27706.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 242 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 6/230 (2%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIP 65 +++++ E++ L +R I P+R+ L Sbjct: 16 DLERAATPDEIARLLVEAFSRYGVSYIM-AGIVPDPGLPKRRHAGFVLASTMPEGWARRY 74 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + + P W ++ + + G AGI P Sbjct: 75 VTQGYALHDPTVRRLCTTATPFDWNAVL---PDTPTAGRVMNEAGEFGIRAGITVPFVTL 131 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQL 184 + G + + E + + + + + L + + ++ A L+ RE LQ Sbjct: 132 DGEPGGISVSGERIEIDPAERVAVNLVATYAVGQLLLMNSRPAAPAPARLSPREREALQW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EI +G++ V+ +L SA KLD VNR +A+A+R G I Sbjct: 192 AAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGLI 241 >gi|311279135|ref|YP_003941366.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748330|gb|ADO48082.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 240 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 17/233 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +SS +E+ L ++ +A + P + I Y Sbjct: 18 QLASSSEEIYSILQQQTEMLEYDWYA---LCVRHPVPFTRPKIALQTTYPRAWIAQYQAE 74 Query: 69 IETYGDDFLF--HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D L ++ G LP W + E G+ + L Sbjct: 75 NYFTIDPVLKPENYRHGYLP--WTDRLFQDAQE-----FWDAARDHGLRKGVTQCLILPN 127 Query: 127 HKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSC 181 G++ + E + E + T L L + ++RE Sbjct: 128 RALGFLSVSREGIQKDPLAEDETQMRLQMLAEFSTTALLRLDDSAILTPEMKFSKRELEI 187 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EI+ L +S +TVN + + K +A N+ Q A+ G I Sbjct: 188 LKWTAEGKTSAEISIILSISENTVNFHQKNMQKKFNAPNKTQIACYAVATGLI 240 >gi|312973873|ref|ZP_07788045.1| regulatory protein sdiA [Escherichia coli 1827-70] gi|310332468|gb|EFP99703.1| regulatory protein sdiA [Escherichia coli 1827-70] Length = 221 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 13/229 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + +E+ + +++ + Y++ P + + NY Sbjct: 1 MEAAEEVYHEIEFQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNF 57 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D L N ++W Q G+ + L G Sbjct: 58 LAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLMLPNRALG 112 Query: 131 YVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLA 185 ++ F+ L++E+ ++ + + + L + + N ++RE L+ Sbjct: 113 FLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWT 172 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 173 AEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 221 >gi|15964581|ref|NP_384934.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309327|ref|ZP_07588990.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320063|ref|ZP_07599484.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073759|emb|CAC45400.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894278|gb|EFN25043.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900196|gb|EFN30814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 3/226 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 S ++ L + R F + I + Q + + +D + Sbjct: 22 AIDSEDDVRRALGRVSEGFGFRGFMVLAIPESGSHSLTAQ--ALMTTWPMDFLRRYDSAR 79 Query: 70 ETYGDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 G + +P + + + ++ G+ ++ + G+ PV Sbjct: 80 LIDGSPVIQRLRRSTIPFTYDAHLLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGH 139 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + F + ++++ + + + + E+ + +L+ RE CL+ A G Sbjct: 140 RAAIAFGGDRSAVSDDEMQALNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAG 199 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ E+A + LS +TVN YL AT KLD+VNR+Q +AKAIR G I Sbjct: 200 KTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245 >gi|167828172|ref|ZP_02459643.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] Length = 210 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 64/215 (29%), Gaps = 9/215 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FP I + NY + D + Sbjct: 1 MTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGS 60 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 LP+ W + +S G + R G + + + Sbjct: 61 DLPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDT 115 Query: 144 EVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 H +LT RET L+ DG T+ EIA L Sbjct: 116 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 175 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 176 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 210 >gi|53717016|ref|YP_106048.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|67643368|ref|ZP_00442115.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|124382942|ref|YP_001025964.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126445405|ref|YP_001061548.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|126446264|ref|YP_001078053.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|126457742|ref|YP_001074487.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134284195|ref|ZP_01770887.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167003599|ref|ZP_02269385.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167741352|ref|ZP_02414126.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167818528|ref|ZP_02450208.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167826910|ref|ZP_02458381.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167848430|ref|ZP_02473938.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167896980|ref|ZP_02484382.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167905359|ref|ZP_02492564.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167921599|ref|ZP_02508690.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217423225|ref|ZP_03454727.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226194550|ref|ZP_03790147.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507990|ref|ZP_04520705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313995|ref|ZP_04813012.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254176241|ref|ZP_04882899.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254189375|ref|ZP_04895885.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254195237|ref|ZP_04901665.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200901|ref|ZP_04907266.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254204867|ref|ZP_04911220.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254262915|ref|ZP_04953780.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254299430|ref|ZP_04966879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254358982|ref|ZP_04975254.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52422986|gb|AAU46556.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|126224896|gb|ABN88401.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126231510|gb|ABN94923.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126239118|gb|ABO02230.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|134244398|gb|EBA44504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748513|gb|EDK55588.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147754453|gb|EDK61517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148028169|gb|EDK86129.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|156105362|gb|ABU49180.1| BpsR4 [Burkholderia pseudomallei] gi|157809517|gb|EDO86687.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937053|gb|EDO92723.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697283|gb|EDP87253.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|169651984|gb|EDS84677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|217394133|gb|EEC34153.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225933378|gb|EEH29368.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|235000195|gb|EEP49619.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238524705|gb|EEP88137.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|242137234|gb|EES23637.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060902|gb|EES43088.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|254213917|gb|EET03302.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|261827048|gb|ABM99276.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 238 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 17/217 (7%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 ++ +NFA C L + + + D + H + Sbjct: 31 RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 85 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANE 144 P+IW S +L G++ PV + ++ Sbjct: 86 PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAS 142 Query: 145 VIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 I+ + + + L+ +R + LT RE LQ AG G T+ EI++ Sbjct: 143 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 201 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 202 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|59940051|gb|AAX12564.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W ++E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + A LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR AIA + G + Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIANGVSSGML 243 >gi|167742620|ref|ZP_02415394.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167914947|ref|ZP_02502038.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167922782|ref|ZP_02509873.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] Length = 210 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 63/215 (29%), Gaps = 9/215 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FP I + NY + D + Sbjct: 1 MTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGS 60 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P+ W + +S G + R G + + + Sbjct: 61 DRPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDT 115 Query: 144 EVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 H +LT RET L+ DG T+ EIA L Sbjct: 116 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 175 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 176 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 210 >gi|150395666|ref|YP_001326133.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027181|gb|ABR59298.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 286 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 82/230 (35%), Gaps = 3/230 (1%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPN 66 + + L+ + ++ + F + I S + + N + + + Sbjct: 56 ASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMPAELLNKYD 115 Query: 67 ILIETYGDDFLFHFNSGLLPI--IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 L + P + + ++E + + FPV Sbjct: 116 SLSMLRFSTGVRRLRETTTPFQILLEDWEKEGGKPDAAADYFAMLRENGLLQANYFPVHD 175 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G VI L +E V E+ + L+ERE CL Sbjct: 176 AEGGRGAVILMGPEAGLPMTAAMELQMIAIHVYNRLAEIGSVWKNTNTVLSEREIQCLNW 235 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIA LGLS HTVN YL T KLDAVNR QA+ KA++ GYI Sbjct: 236 TAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 285 >gi|167564970|ref|ZP_02357886.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167572172|ref|ZP_02365046.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 77/217 (35%), Gaps = 17/217 (7%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 ++ +NFA C L + + + D + H + Sbjct: 31 RQLGFKNFAY-----RHQIAGMSSSRCTLDGFPAEWRLRYDSADYLSIDPVVQHCRCRTV 85 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-------- 137 P+IW T ++ G++ PV + ++ Sbjct: 86 PLIWSDDLYTTG---RAKIMRDEAKSYGLVYGLSCPVHDRGGTISMLSMATDAPFERDTI 142 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 ++ + + + + L+ +R + LT RE LQ AG G T+ EI++ Sbjct: 143 DVLRLLSLSQLLASFVHAAMQELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 201 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 202 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|167913657|ref|ZP_02500748.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] Length = 238 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 17/217 (7%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 ++ +NFA C L + + + D + H + Sbjct: 31 RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 85 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANE 144 P+IW S +L G++ PV + ++ Sbjct: 86 PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAS 142 Query: 145 VIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 I+ + + + L+ +R + LT RE LQ AG G T+ EI++ Sbjct: 143 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 201 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 202 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|323961965|gb|EGB57564.1| autoinducer binding domain-containing protein [Escherichia coli H489] Length = 240 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPEYFNQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|150395665|ref|YP_001326132.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027180|gb|ABR59297.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 3/221 (1%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 ++ L + R F + I + Q + + +D + G Sbjct: 27 DDVRGALGRVSEGFGFRGFMVLAIPDSGSHSLTAQ--ALMTTWPMDFLRRYDSARLIDGS 84 Query: 75 DFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + +P + + ++ G+ ++ + G+ PV V Sbjct: 85 PVIQRLRRSTIPFTYDAHQLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGHRAAVA 144 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F + ++ + + E + + + E+ + +L+ RE CL+ A G T+ E Sbjct: 145 FGGDRSAVSGDELQELNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAGKTTVE 204 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A + LS +TVN YL AT KLD+VNR+Q +AKAIR G I Sbjct: 205 MARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245 >gi|149193353|gb|ABR21211.1| PhzR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 13/226 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + ++ F + P + NY D D Sbjct: 22 DMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H PI+W + + G+A P + G + Sbjct: 82 TVKHSKVSSSPILWSNELFRGCPD-----LWSEANDSNLRHGLAQPSFNTQGRVGVLSLA 136 Query: 136 SEFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSCLQLAGDG 188 + ++ + EA + LE + + + RE L+ DG Sbjct: 137 RKDNPISLQE-FEALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADG 195 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 196 KTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|76819232|ref|YP_337020.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1710b] gi|76583705|gb|ABA53179.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] Length = 394 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 17/217 (7%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 ++ +NFA C L + + + D + H + Sbjct: 187 RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 241 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANE 144 P+IW S +L G++ PV + ++ Sbjct: 242 PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAS 298 Query: 145 VIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 I+ + + + L+ +R + LT RE LQ AG G T+ EI++ Sbjct: 299 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 357 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 358 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 394 >gi|167577870|ref|ZP_02370744.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] Length = 236 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 62/215 (28%), Gaps = 9/215 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FP I + NY + D + Sbjct: 27 LTRAAATLGYEYAAYGMRRPFPISNPQILMVSNYPDRWQERYIEARFANVDSAVKAALGS 86 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P+ W + + G + R G + + + Sbjct: 87 DRPVTWSASTNASKSA-----FWAEALSFGIAHGWSSASRGADGTIGVLSLSRRQDAIDT 141 Query: 144 EVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 H +LT RET L+ DG T+ EIA L Sbjct: 142 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 201 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 202 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236 >gi|53721347|ref|YP_110332.1| LuxR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|52211761|emb|CAH37760.1| putative LuxR-family transcriptional regulator [Burkholderia pseudomallei K96243] Length = 234 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 17/217 (7%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 ++ +NFA C L + + + D + H + Sbjct: 27 RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 81 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANE 144 P+IW S +L G++ PV + ++ Sbjct: 82 PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAS 138 Query: 145 VIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 I+ + + + L+ +R + LT RE LQ AG G T+ EI++ Sbjct: 139 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 197 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 198 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 234 >gi|83716885|ref|YP_439427.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|257142551|ref|ZP_05590813.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650710|gb|ABC34774.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 234 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 62/215 (28%), Gaps = 9/215 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FP I + NY + D + Sbjct: 25 LTRAAATLGYEYAAYGMRRPFPISNPQILMVSNYPDRWQERYIEARFANVDSAVKAALGS 84 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P+ W + + G + R G + + + Sbjct: 85 DRPVTWSASTNASKSA-----FWAEALSFGIAHGWSSASRGADGTIGVLSLSRRQDAIDT 139 Query: 144 EVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 H +LT RET L+ DG T+ EIA L Sbjct: 140 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 199 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 200 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 234 >gi|312963163|ref|ZP_07777648.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311282674|gb|EFQ61270.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 240 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 11/212 (5%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +++ ++ N + F + + Q++I E NY + + D Sbjct: 16 DQITSVFEMVINETYSLGFQFCSFKMSTQQLANQKIIFEKSNYPNEWSHLYKQAKFADVD 75 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + H +LP +W+ + L G P+ + Sbjct: 76 PVVAHCQRSVLPFVWKETAFQGTP-----HLWTLAQSCGVHLGWTQPLHGPRGVFSMLTL 130 Query: 135 TSEFLMLANEVIIE----AHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDG 188 + ++ E + E A C+ + T + + NLT RE L+ + G Sbjct: 131 SRSKREISPEELYEKAGNALWLCHAMHTVVAHKYANEPDAVPCNNLTPRELEVLRWSALG 190 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 T+ EIA+ L LS TV + S+ KL N Sbjct: 191 KTAGEIAKILCLSERTVGFHNCSSMRKLGVNN 222 >gi|329907385|ref|ZP_08274651.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] gi|327546980|gb|EGF31877.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] Length = 267 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 75/225 (33%), Gaps = 11/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ I R A F + + P I +NYD + ++ D Sbjct: 43 DIDVLFAHIVERTAALGFDFASFGMQMPLPLNNPKIVTRNNYDPEWWNVYLKNNYFQIDP 102 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H + +W + G R + F+ Sbjct: 103 VVIHVRTSDEAAVWSDNFFSAQPK-----FWEHAQSFGLRYGWTKATRSSVGTMSQLSFS 157 Query: 136 SEFLMLANEVII----EAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGY 189 L+ + ++ E F ++ + L++RE ++ DG Sbjct: 158 RRENPLSEQELLLKESAMIDLADLAHLHMTECFVLEQFPESKTELSQRERDVIRWCADGK 217 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EIA L +S +VN ++ + KLDA N+ A+ KA FG + Sbjct: 218 TNAEIAMILNISTSSVNFHVLNFIKKLDASNKTHAVMKAASFGLL 262 >gi|222085036|ref|YP_002543565.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722484|gb|ACM25640.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 57/219 (26%), Positives = 83/219 (37%), Gaps = 2/219 (0%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + + R F + + S F + ++N+ + + + Sbjct: 28 DVFRFMKRVTDAYRCRAFMVVNLPSLTSFELQ--SNSVINNWPAELLTVYDQEGLLRNST 85 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 LP ++ + +S QL L I P G VI + Sbjct: 86 VSRRLRVSTLPFVYDTAANTNRDDSKIQLRASLFERFRMARSICLPTHDASGIRGAVILS 145 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + E + V E+ LT+RE CL G TS EIA Sbjct: 146 GDREAFTAEETKDLCYIAIHVFDRLAEIRNLDVRIVDTLTDRELDCLNWTAAGKTSAEIA 205 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 206 EILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRVGLI 244 >gi|83956361|ref|ZP_00964786.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] gi|83839409|gb|EAP78592.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] Length = 269 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 88/240 (36%), Gaps = 11/240 (4%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +SE+ + KS+ +L L+ + +N ++ + + Y Sbjct: 33 LSEDFSSRAKSTPELDLETTLNDLSTLYGLKNITYFSASIPYANDDE---HILITTYSTT 89 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + L D L + LLP+ W + T E+S + + G+ Sbjct: 90 WVEHYFSLKYQDVDPVLHAGSRSLLPVDWGHL--STTGETSRNFFGEAKEYGIGETGLTI 147 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARN-L 174 PVR + + S+ E+ I + + + + L Sbjct: 148 PVRGMLGEEAMISLNSDLRARDWELFCREMISDFTYFAHLLHDSVTRSRIHQHETDHPQL 207 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+ A G T+ E LGL+ TV+ YLG+A KL + QA+A A++ I Sbjct: 208 TKREAQVLRWAARGKTAWETGIILGLTEKTVSFYLGNACAKLKVATKTQAVAFAVKERLI 267 >gi|167578890|ref|ZP_02371764.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616988|ref|ZP_02385619.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257140903|ref|ZP_05589165.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 238 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 17/217 (7%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 ++ +NFA C L + + + D + H + Sbjct: 31 RQLGFKNFAY-----RHQISGAASSRCMLDGFPTEWRLRYDAADYLSIDPVVQHCRCRTV 85 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL------ 139 P+IW T +L G++ PV + ++ Sbjct: 86 PLIWHDELYTTG---RAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAN 142 Query: 140 --MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + + + + L+ +R + LT RE LQ AG G T+ EI++ Sbjct: 143 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 201 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 202 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|90023140|ref|YP_528967.1| LuxR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89952740|gb|ABD82755.1| transcriptional regulator, LuxR family [Saccharophagus degradans 2-40] Length = 247 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 88/231 (38%), Gaps = 8/231 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ + L + + I+SA I + NY + Sbjct: 15 EATDEETLKELCLKFCELVGFEFYIFGIISSASSL--SSPTISTISNYPDEWFKNYFEEG 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + I W+ + + E +++ G+ + G++ P++ + Sbjct: 73 MQRHDPVVRYCMQNTSAIRWRQLMDLEHYVDAIGEKIMIRASESGLCDGLSIPIKAPSGE 132 Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARN-LTERETSCLQ 183 S N+ I A QV + L K + + LT RE L Sbjct: 133 IAIFSLASNREEGLNQRINACLPFAQSFGTQVFECYSALMLKLAQNKQTHLTAREKESLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T+ EI++ L +S TV +L SAT KL AVNR A+AKAI G I Sbjct: 193 WACEGKTTWEISKILDVSERTVIFHLSSATSKLGAVNRQHAVAKAILSGLI 243 >gi|320652407|gb|EFX20705.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. H 2687] Length = 240 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 L N ++W + Q G+ + L Sbjct: 71 YQAKNFLAIAPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|163744256|ref|ZP_02151616.1| Transcriptional activator protein RaiR, putative [Oceanibulbus indolifex HEL-45] gi|161381074|gb|EDQ05483.1| Transcriptional activator protein RaiR, putative [Oceanibulbus indolifex HEL-45] Length = 239 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 15/231 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ L +++ + + I++A + Y D + Sbjct: 16 QADGQAALGQVSEALRDHYGILHVVYHWIDTAGEQ-------YGCGTYGALWSDRYHEHN 68 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + P+ W+ + + + G + PVR + Sbjct: 69 YLRIDPVVSGCYRRFEPVDWKDLDWTSRAARK--FRRDASDHGVGNQGFSVPVRGPHGQF 126 Query: 130 GYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQ 183 + A + L L +R A + L+ RE + Sbjct: 127 ALFTTNHSCTDALWSSFTARHRRDLIWAAHCFNEKALALAPNRRPGAVQALSPREVDAMT 186 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++A++L +S HT+ AY+ SA KL A N A+A+A+ G I Sbjct: 187 LLAVGYNRAQVAQRLSISEHTLRAYVESARFKLGASNTTHAVARALSRGLI 237 >gi|62822972|gb|AAY15207.1| transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 11/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + ++ F + P + NY D D Sbjct: 22 DMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H PI+W + + G+A P + G + Sbjct: 82 TVKHSKVSSAPILWSNELFRGCAD-----LWSEAKDSHLCHGLAQPSFNAQGRVGVLSLA 136 Query: 136 SEFLMLANEVIIEA----HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189 + ++ + EL + + + RE L+ DG Sbjct: 137 RKNNPISLQEFEALKPVTRAFAAAAHEKISELESDVRVFNTGVEFSGRECDVLRWTADGK 196 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|26417542|gb|AAM75413.1| transcriptional regulator PpuR [Pseudomonas putida] Length = 238 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 12/234 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + ++ L ++ ++ NF I Q + +Y Sbjct: 7 DELLRLSEMERFEDWLAHLKILTRKLGYSNFL---IGLKPAPTDANQQVLIYSDYPDAWR 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + D + H + P++W ES G+A P+ Sbjct: 64 TRYDAESYAAVDPVVQHCLNANRPLLWDRDNYRRPSESE---FFEEAAAHGLQQGLALPL 120 Query: 123 RLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + G + E + A + L+ + S+ LT R Sbjct: 121 HGPRGEAGMLCLKPSESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVH-LTSR 179 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E LQ + G T+ EI+ L + ++ + + K +R A+ KAI+ Sbjct: 180 EKEVLQWSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQ 233 >gi|209863456|gb|ACI88828.1| PhzR [Pseudomonas sp. G5(2008b)] Length = 241 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 11/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + ++ F + P + NY D D Sbjct: 22 DMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H PI+W + + G+A P + G + Sbjct: 82 TVKHSKVSSAPILWSNELFRGCAD-----LWSEAKDSHLCHGLAQPSFNAQGRVGVLSLA 136 Query: 136 SEFLMLANEVIIEA----HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189 + ++ + EL + + + RE L+ DG Sbjct: 137 RKNNPISLQEFEALKPVTRAFAAAAHEKISELESDVRVFNTGVAFSGRECDVLRWTADGK 196 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|59940041|gb|AAX12559.1| LuxR-type transcriptional regulator [Aeromonas eucrenophila] Length = 260 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 11/239 (4%) Query: 1 MSENTLT--GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58 M ++ L + +S+ + LI + Y + ++ Y Sbjct: 1 MKQDQLLEYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPRAEVFMQYP 60 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAG 117 D + LPI W ++ ++ + L G Sbjct: 61 DPWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNG 120 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSA 170 I+FP+ +NG + F + ++++++E + + + + Sbjct: 121 ISFPLHGAAGENGILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREHDP 179 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR AIAK + Sbjct: 180 HEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGV 238 >gi|163761139|ref|ZP_02168216.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162281690|gb|EDQ31984.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 246 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 87/230 (37%), Gaps = 5/230 (2%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDF----PRRQQLICELHNYDLDSGDI 64 + S ++ + +++ + F +++ + + I + ++ + Sbjct: 15 EPISKIRTTFDAIQVLRKTCLSYGFRYFSVLTIPAMVSESAQVMSHISVISSWPPELIAD 74 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + L L + P++++ + + + L G+ FPV+ Sbjct: 75 YDRLELGKNSPVLERLRKQITPLLFEVENIDSERDGAEQASAKELFTRFGVTMGVYFPVQ 134 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G + V F L+ + ++ ++ +A L RET LQ Sbjct: 135 DGRGQRFAVCFMGARKPLSATELPSLAMFATLLVDQLSQITANEDTAKLVLNARETEVLQ 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G TS EIA GLS HTVN Y AT KL NR QA+ +AIR G Sbjct: 195 WTAEGKTSAEIARITGLSEHTVNHYATIATQKLGCSNRTQAVVQAIRLGL 244 >gi|310769028|gb|ADP21168.1| PhzR [Pseudomonas chlororaphis] Length = 241 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 11/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + ++ F + P + NY D D Sbjct: 22 DMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H PI+W + + G+A P + G + Sbjct: 82 TVKHSKVSSAPILWSNELFRGCAD-----LWSEAKDSHLCHGLAQPSFNAQGRVGVLSLA 136 Query: 136 SEFLMLANEVIIEA----HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189 + ++ + EL + + + RE L+ DG Sbjct: 137 RKNNPISLQEFEALKPVTRAFAAAAHEKISELESDVRVFNTDVEFSGRECDVLRWTADGK 196 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|325292093|ref|YP_004277957.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059946|gb|ADY63637.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 246 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 80/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ L + + F + ++ + + + ++ + + Sbjct: 28 DIFRFLKRLTEAWGFKAFMV--LDLSAEMASELSQCTIITSWPAELLQRYDEEGMLQRSL 85 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQ-LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + P + E++ + + L + FPV G V F Sbjct: 86 VMAQLKKSTTPFSVSLDFLVSGDENAPKKPVIGLFERFDMINSVWFPVHDITTMRGAVSF 145 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + L + E + E+ + L ERE CL G TS EI Sbjct: 146 SGNKTTLPTSQLAELFYISSHIFARLSEIRRLDLRVPETLNEREIDCLNWTAAGKTSAEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE + LS HT+N YL AT KLD VNR QA+AKA+R G I Sbjct: 206 AEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGLI 245 >gi|159044368|ref|YP_001533162.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912128|gb|ABV93561.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 243 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 5/229 (2%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ + ++ + + + + + P + + + Sbjct: 11 VSRAETPAQIWDAVLPFAHSFGIDKVSYHNTPAFGAVPGSETAVF-ARGFPESWLCDYVN 69 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + P W I + T + + ++ G+A V Sbjct: 70 ERLYEVDPIPAYAAHATEPFRWSDIAKLTPLTAPETDFLKRLLQQGLGDGLALQVFGPNM 129 Query: 128 KNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +NGYV F S L+ I E A + L + LT RE L Sbjct: 130 RNGYVGVGFASSDPDLSGGDIRELQAAAQAAHLRYCTLVPVATP--EALTPREREVLGWI 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IAE LG+S HTV+ + KL+ +R A + I G I Sbjct: 188 ARGKSNSVIAEILGVSPHTVDTLVRRIYGKLEVADRTTAAIRGIGAGLI 236 >gi|197344637|gb|ACH69668.1| LuxR family transcriptional regulator [uncultured proteobacterium] Length = 246 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 13/231 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ +L L +Q A F L P + Y +I Sbjct: 22 EATDEADL---LKRMQAAAVASGFEHVLFGIELRRPFLDPIQHITSGYPDSYQEIYRTKG 78 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + + P+IW + G + PVR G H Sbjct: 79 FISRDPSVAYCQTHTKPLIWGEDMYLADSYE----IMEESTKYGLSHGFSVPVRDGPHVV 134 Query: 130 GYVIFTSEFLMLANEV---IIEAHGA---CYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + + +++A C V + + + ++ L+ RE CL+ Sbjct: 135 SMLSLARDKPFESAAEKKLVVDAGMVLANCVHVASKNIIVPDVETTLRPKLSRREHECLK 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ I++ L +S TV ++ + KL+ R+QA + G I Sbjct: 195 WIAEGKSNGVISDLLKISEPTVEFHIRNLFTKLNVATRVQAAVVGVLMGLI 245 >gi|163734517|ref|ZP_02141956.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] gi|161392010|gb|EDQ16340.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] Length = 267 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 70/204 (34%), Gaps = 4/204 (1%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + ++ ++ P + L + D + P W Sbjct: 58 VSYHSDDAQ--LPGSKPLGIVSDGFPEGWVCEYLESELFRVDPIPQLASILSRPFRWSEA 115 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAH 150 + + G+ ++ G+A V +N YV F L ++ I E Sbjct: 116 PKLMRLSQEGERYMQTLADSGLGDGVAMQVYGPNMRNAYVGLGFGEHDPNLTSDEIFELQ 175 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A + EL + R A L+ RE LQ G ++ IAE LG+S HTV+ Sbjct: 176 CAAQIAHIRYCELTEYRQRTADTLSPREVEILQWIARGKSNSVIAEILGISRHTVDTITR 235 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R A + + G + Sbjct: 236 RIFEKLDVNDRTTAAIRGLGSGLV 259 >gi|227823797|ref|YP_002827770.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] gi|227342799|gb|ACP27017.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 246 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 12/235 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + +E+ P + +R + + + P R + + I Sbjct: 14 EEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLR---LLLAGRWPESWPQIYIRK 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + + W+ + + F G FPV Sbjct: 71 KYVVIDPTIRYLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGDIFPVHGR 130 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTERET 179 G + + L+ + ++ LEL + S +T RE Sbjct: 131 RGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRREM 190 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG TS +I + L +S HTV+ Y+ KL A NR A+A A R G I Sbjct: 191 EALNYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHAVAIAFRLGLI 245 >gi|50084356|ref|YP_045866.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49530332|emb|CAG68044.1| putative transcriptional regulator, luxR family [Acinetobacter sp. ADP1] Length = 246 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 3/229 (1%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 +++S ++++ + I + +I ++ N+ D +I Sbjct: 18 QIRQASKIEDIFDVVVEFAQNIDFDRLIICSIAPHGKEELIDEVFFVYGNW-TDRTNIEE 76 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 H P W + + + ++ + +G+ P+ Sbjct: 77 RNKYLRNCPITRHIFDYDEPFFWTKTFNKNNSKETYRVIKNISER-GEESGVQVPIFGRT 135 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLA 185 G + F + L + C + + LT+RE L+ Sbjct: 136 GLEGAISFAGKLSDLGADFRFILQSVCVTAFREIQSKRSLNLLRENSVLTQREKEILKWT 195 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIAE L +S TV +L S KL+ + QAIA A+ G I Sbjct: 196 AVGRKQSEIAEILKISERTVENHLRSIRKKLEVKSTGQAIASALLKGEI 244 >gi|309779367|ref|ZP_07674129.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp. 5_7_47FAA] gi|308921925|gb|EFP67560.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp. 5_7_47FAA] Length = 250 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 69/231 (29%), Gaps = 12/231 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L++ + +Q + F P + Y + + Sbjct: 22 QLNGLRDADAVIRSLQPAVALLGFDYCAYALRAAIPITRFNTLCWSTYPEPWCEHYRVHG 81 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D L + P++W I G + +R Sbjct: 82 YLAIDPVLQFGQRCVKPVLWSGIATADA------RFWADARQHGLNHGWSHTIRDHTGIF 135 Query: 130 GYVIFTSEFLMLANEVII----EAHGACYQVITDF--LELFKKRSSAARNLTERETSCLQ 183 G + + + E + L K AA L E E L Sbjct: 136 GTFSLVRRATPITEDELAVSEPEMIWLSQRAHGSISTLMAEKVLPDAATRLKEVERQTLH 195 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ E+A L ++ VN ++ +A KL+A N+ A+ KA G I Sbjct: 196 WTAEGKTAAEVAAILEMTERNVNFHIRNAVTKLNAANKTHAVVKAALLGLI 246 >gi|59940131|gb|AAX12604.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +++ + LI + Y + ++ + + Sbjct: 14 TTVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL-SVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LP W + E G + L GI+FP+ +N Sbjct: 74 ACDPIIQLARKQTLPNYWNRLDERARFLPEGSPDVMGLAAEFRLRHGISFPLHGAAGENR 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFQAAIRIVRVSLREDEPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|229592722|ref|YP_002874841.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364588|emb|CAY52478.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 236 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 13/225 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 E++ ++ N+ F + + Q E NY + + N D Sbjct: 17 EITSVFEMVINQTYELGFQYCSFKMSSQVSENQTNPIEFTNYPKEWTTVYNQARYFDVDP 76 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H +LP++W+ + L L V + + Sbjct: 77 VVKHCKRCVLPVVWEGTLFKDAPS-----LWSLAQTLNVNVAWTQAVHDFQGVFSMLTLS 131 Query: 136 SEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ + + A + V+ + LT RET L+ + G Sbjct: 132 RGTDDVSPVELYEKAGHVLWLCHAMHAVVAQKYAGKPSALPPS-KLTPRETEILKWSAMG 190 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+ +IA L LS TV ++ S KL N+I A+ A + G Sbjct: 191 KTASDIATILCLSERTVGFHISSTFKKLGVNNKIAAVLCASKAGL 235 >gi|161724874|emb|CAO85748.1| PmrR protein [Pseudomonas sp. RW10S2] Length = 236 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 59/208 (28%), Gaps = 11/208 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 + L ++ + F P + I L NY D + D Sbjct: 16 DTQTLLEEVKAAARHLGFDYCAYGLRTPLPVTKPRIFMLSNYSRPWCDHYHANGYLLLDP 75 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H + P++W + G A G G + Sbjct: 76 TVRHCQRSMQPVVWGDEIFADAPQ-----LWDEARQAGLRHGWAQSCLEGSKGGGMLTLA 130 Query: 136 SEFLMLANEVII----EAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGY 189 + + F L + L+ERE L+ A DG Sbjct: 131 RSGEGIGEGELRAHETRMRWLANVAHQGFSRLLSDSWQPQPQSPLSEREREVLRWAADGK 190 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLD 217 T E+A+ L LS+ TV + +A KL Sbjct: 191 TLNEVADILTLSIETVKFHTRNAGAKLG 218 >gi|328542023|ref|YP_004302132.1| transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326411773|gb|ADZ68836.1| Transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 239 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 78/226 (34%), Gaps = 4/226 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + Q++S RL + A + + I + + + + Sbjct: 16 RLETAQDVSARLGALARDYGFH--AHVLASFQGPGTVAEPRILAAG-WAQEWQERYLVNQ 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + +P W E + G G+ PV Sbjct: 73 YAVDDPVVVRATLASMPFRWSDALNEPWVTPRGVRVFDEARAFRLCDGVFIPVYGPKGLE 132 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDG 188 G + E + + E + H L + + +A LT RE CL+ G Sbjct: 133 GGLSLGGERVDVGAEELKALHLVGLYAYDHVRALSQGDPAWSAGTLTPRELECLKWVAAG 192 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI++ LG+S HT + YL A KL A NR A+A+A R I Sbjct: 193 KTSWEISQVLGISRHTADWYLAEAVRKLGAANRTHAVAEAFRRAMI 238 >gi|73672744|gb|AAZ80478.1| PpuR [Pseudomonas putida] Length = 238 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 12/234 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + ++ L ++ ++ NF I Q + +Y Sbjct: 7 DELLRLSEMERFEDWLAHLKILTRKLGYSNFL---IGLKPAPTDANQQVLIYSDYPDAWR 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + D + H + P++W ES G+A P+ Sbjct: 64 TRYDAESYAAVDPVVQHCLNANRPLLWDRDNYRRPSESE---FFEEAAAHGLQQGLALPL 120 Query: 123 RLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + G + E + A + L+ + S+ LT R Sbjct: 121 HGPRGEAGMLCLKPFESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVH-LTSR 179 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E LQ + G T+ EI+ L + ++ + + K +R A+ KAI+ Sbjct: 180 EKEVLQWSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQ 233 >gi|2495423|sp|Q51786|PHZR_PSEFL RecName: Full=Transcriptional activator protein phzR gi|1050313|gb|AAC18899.1| shows homology to luxR family; putative [Pseudomonas fluorescens] Length = 244 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 69/215 (32%), Gaps = 11/215 (5%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 ++ F + P + NY D + H Sbjct: 35 RALRELRFDFFAYGMCSVTPFMRPKTYMYGNYPEHWLQRYQAANYALIDPTVKHSKVSSA 94 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 PI+W + + G+A P + G + + ++ + Sbjct: 95 PILWSNELFRNCPD-----LWSEANDSSLCHGLAQPSFNTQGRVGVLSLARKDNAISLQE 149 Query: 146 IIEAH----GACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + LE + + +ERE L+ DG TSEEI +G Sbjct: 150 FEALKPVTKAFAAAALEKISALETDVRAFNTDVEFSERECDVLRWTADGKTSEEIGVIMG 209 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TVN + + K+ A NR+QA++ A+ GYI Sbjct: 210 VCTDTVNYHHRNIQRKIGASNRVQAVSYAVALGYI 244 >gi|289649319|ref|ZP_06480662.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 247 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAAQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I A L+ RET L+ Sbjct: 138 LCNARQQKDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE +S TV ++ + + KL+ QA+ KAI G + Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247 >gi|150377825|ref|YP_001314420.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150032372|gb|ABR64487.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 243 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 85/240 (35%), Gaps = 11/240 (4%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S + T + + +L L + + + + S Y Sbjct: 7 LSASLRTLQAAKHRADLQSALGELCEHYGVSHMTILVVCSGGR---SGSYPYCCTTYPER 63 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + D + G LP+ W S+ + E + +L + G+ Sbjct: 64 WTEKYVGKCFFEIDPVIDVIRWGFLPVDWSSLDRRS--EQAHRLFKEARLYDIGPHGLTI 121 Query: 121 PVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNL 174 P+R + + T + L I E + + L R + RNL Sbjct: 122 PIRGPKGERCLLSVTSNLPGRHWSRLRASSIHELQILSHYLHETVLSASGLRGTDRYRNL 181 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE+ C QL G S++IA LG+S + V YL SA +KL A QA+A+A I Sbjct: 182 SRRESQCFQLLATGRISKQIAADLGISENAVKLYLRSARMKLGAATSHQAVARASFLELI 241 >gi|323528655|ref|YP_004230807.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385657|gb|ADX57747.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 242 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 13/231 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ E + + + + R + Y + + Sbjct: 15 AADEAEWFSAVAGLAETWGFDRLLVAMLPRPT---IRLEDAYVRSTYAPEWRRTYDEQGL 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + H + P++W E + Q AG+ P+ + G Sbjct: 72 VHIDPTVAHCATRSTPLVWS---PEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 128 Query: 131 YVIFTSEFLMLANEVI-IEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQ 183 + F ++ I+ ++ D L + LT RE CLQ Sbjct: 129 MMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLQ 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ L S VN ++ + KL +R A A + G I Sbjct: 189 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239 >gi|218509884|ref|ZP_03507762.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 373 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 74/194 (38%), Positives = 113/194 (58%), Gaps = 3/194 (1%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + Sbjct: 10 VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFG 68 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123 + YGD L H LLP+ W + + RL G+LPF+G+AFPVR Sbjct: 69 KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVR 128 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG NG+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQ Sbjct: 129 LGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 188 Query: 184 LAGDGYTSEEIAEK 197 LAGDG SEEIA K Sbjct: 189 LAGDGRISEEIARK 202 >gi|257487581|ref|ZP_05641622.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012605|gb|EGH92661.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 247 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I A L+ RET L+ Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE +S TV ++ + + KL QA+ KAI G + Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMGMV 247 >gi|118917992|dbj|BAF40420.1| PsyR [Pseudomonas syringae pv. tabaci] Length = 247 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I L+ RET L+ Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPTQCKLSTRETGVLKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE +S TV ++ + + KL+ QA+ KAI G + Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247 >gi|330985566|gb|EGH83669.1| LuxR transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 247 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAQ-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I A L+ RET L+ Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE +S TV ++ + + KL+ QA+ KAI G + Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247 >gi|167566223|ref|ZP_02359139.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis EO147] gi|167573334|ref|ZP_02366208.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis C6786] Length = 230 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 5/221 (2%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + + I + +Y + + D Sbjct: 11 DVRTLIETFRQAALQIGYQHHAIVELSGASHSASVNVVSLHYPSEWVEHYTRNDYFDIDP 70 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 P W + + + + GI+ P+ + + Sbjct: 71 IPRAAFRYSTPFSWSDVATSNL---RERHLLMEAEDAGLDNGISIPLHQPLGHVLLINLS 127 Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEE 193 E A+ Q F + R + +LT+RE CL G +S Sbjct: 128 GTAPTHDAEAKWRNAYLLGMQFHLQFQSMRTSRPIPPSVHLTDREQICLTWVARGKSSWV 187 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L +S +TV+ ++ +A KL+ +R A KA R G I Sbjct: 188 IANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|239831035|ref|ZP_04679364.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] gi|239823302|gb|EEQ94870.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] Length = 238 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 76/233 (32%), Gaps = 12/233 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + S + L I + FA + + + D Sbjct: 11 ESMQSADDAGQLLEYINTYARQCGFAHTAYLMRIPLLNGVVKWLSFGSLPQEWTDHYADK 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + + P++W S + GI+ P Sbjct: 71 KYADIDPLVRKALNSIEPLVWSSKLFAEAPQ-----IWTDAQRFGIRVGISQPCWAAQGV 125 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARN------LTERETSC 181 G + F L++ I V L +++ N LT RE Sbjct: 126 FGMLSFLRSGPALSSGEISMLRRQLQTVANMLHLAMYEHLDVPTMNCVSEVNLTMREREI 185 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 186 LRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238 >gi|307727058|ref|YP_003910271.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587583|gb|ADN60980.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 242 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 68/231 (29%), Gaps = 13/231 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ E + + + + Y + Sbjct: 15 AADEAEWFSAVAKLAETWGFDRLLIAMLPRPTMRLE---DAYIRSTYAPAWRRTYDEQGL 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + H + P++W E + Q AG+ P+ + G Sbjct: 72 VHIDPTVAHCATRSTPLVWS---PEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 128 Query: 131 YVIFTSEFLMLANEVI-IEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQ 183 + F ++ I+ ++ D L S LT RE CLQ Sbjct: 129 MMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHAQSLLPKLTPRERECLQ 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ L S VN ++ + KL +R A A + G I Sbjct: 189 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239 >gi|186473257|ref|YP_001860599.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195589|gb|ACC73553.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 234 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 10/223 (4%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 + F + R + Y N + D + Sbjct: 12 TWFRELARLADDWGFDRVLVGILPRPGMRLEDAFIRSTYSPTWRQFYNEQGFAHIDPTVA 71 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 H + P+IW + Q AG++ P+ ++G + F ++ Sbjct: 72 HCMTKSSPLIWS---PDLFDTYPAQTMYEEARAHGLRAGVSLPIHGPRQESGLICFVNDH 128 Query: 139 -LMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQLAGDGYTS 191 ++ ++ D + L + LT RE CL+ G ++ Sbjct: 129 NPSDDFWRHLDVVLPNLVLLRDLVIDTSQPHLNTHTQALVPKLTPREQECLKWTARGKST 188 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI+ L S VN +L + K +R A A + G I Sbjct: 189 WEISHILNCSEAVVNFHLKNIRTKFGVNSRRAAAVIATQLGLI 231 >gi|298486193|ref|ZP_07004256.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159200|gb|EFI00258.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|306431677|emb|CBM41481.1| N-acyl homoserine lactone sensor/regulator [Pseudomonas savastanoi pv. savastanoi] Length = 247 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVISSNYPDSWLKSYVASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I A L+ RET L+ Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE +S TV ++ + + KL+ QA+ KAI G + Sbjct: 198 MAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247 >gi|315499426|ref|YP_004088229.1| transcriptional regulator, luxr family [Asticcacaulis excentricus CB 48] gi|315417438|gb|ADU14078.1| transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 248 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 5/232 (2%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + S++ L + +++ +D Q + Y D Sbjct: 16 DTSRVRSVERLFVVFIEAMAHLGFDR-VNFSVMRDMDLDASAQGFGLISTYPTVWQDYYA 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + P W I+ E + + +R + GI P Sbjct: 75 HNGLARIDPVVKWAVGSVRPFRWADIEHEAELTRRQRQFLREAEAGGLYNGIGVPFPGPK 134 Query: 127 HKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + + M +V+ Y V + + S AA +LT E L Sbjct: 135 TLRGGIALATSVRKARPMENLDVLAAYCHHFYAVYKRLVPPGLRLSPAAASLTRTEQEVL 194 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++E IA++L + +V+ ++ + K NR A K + GYI Sbjct: 195 FRLAHGLSNEIIADRLSIKAGSVDFHVQNIFRKFGVNNRTAAAMKGLMGGYI 246 >gi|167837236|ref|ZP_02464119.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 237 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%) Query: 3 ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 E+ L G + S +E + + F + +P + I N+ Sbjct: 6 EDLLAGLDSARSEEEAFRSIETATTALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 62 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L H P++ + G A Sbjct: 63 KRRYVEAGFLDIDPILAHGRRSQQPVVLSETLFAS-----SHQMWVEAQSFGLRFGWAQS 117 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174 + G + + + + + + L K + R L Sbjct: 118 SFDAYGGMGMLALVRSRGPVTEAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 176 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 177 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|307322370|ref|ZP_07601730.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306891988|gb|EFN22814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 243 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 84/240 (35%), Gaps = 11/240 (4%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S + T + + +L P L + R + + S Y Sbjct: 7 LSLSLRTLQSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGR---SGLYPDYCTTYPGK 63 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 +I D + G LP+ W S+ + + +L + G+ Sbjct: 64 WTEIYVDKRYFDIDPVIDVIRWGFLPVDWSSLDRRSAQ--AYRLFKEARSYDIGPHGLTI 121 Query: 121 PVRLGFHKNGYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFK-KRSSAARNL 174 P+R + +S I E + + L + R L Sbjct: 122 PIRGSKGERCLFSVSSNLPKRDWSRLGASSIHELQILSHYLHETTLSASGLREVGRYRTL 181 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RET CLQL G S++IA LG+S + V YL SA VKL+A QA+AKA I Sbjct: 182 SRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKASFLELI 241 >gi|254563872|ref|YP_003070967.1| N-acylhomoserine lactone LuxR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254271150|emb|CAX27157.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens DM4] Length = 165 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 65/164 (39%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 Y D + S W I+ V++ + + G G P+ + G Sbjct: 1 MYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERG 60 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + F L ++ V+ L + S LT RE LQ +G T Sbjct: 61 GLTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKT 120 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 121 DWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164 >gi|209551411|ref|YP_002283328.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537167|gb|ACI57102.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 251 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 74/231 (32%), Gaps = 14/231 (6%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLIC-----ELHNYDLDSGDIPNILIETY 72 + + I F Y + L Q+ + I + Sbjct: 20 RALVTEFERVIDDCGFEYYGLLRHLPQNPAQRHPEPRAAALADRWPEQWPQIYSAKKYVM 79 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKN 129 D + + P W+ ++ + ++ G G FPV Sbjct: 80 IDPMVRYLAHAQRPFRWRESLAAFGKDAQRRRMEQMMVDAFGHGLEDGYIFPVHGRNGIL 139 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQ 183 G + + + L+ I + LEL + A LT RE L Sbjct: 140 GSLSLAGKPVELSPVEIALFEAVARKSFWRMLELKDEAQALETVLPADTPLTRREMEILH 199 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EI + L +S HTV+ Y+ KL A NR QA+A A R I Sbjct: 200 YLAEGMTSMEIGKVLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHRLI 250 >gi|222087763|ref|YP_002546300.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725211|gb|ACM28367.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 246 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 9/224 (4%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 + +++ +++ F Y + + + D + + Sbjct: 22 VVTELESVLRSYKFDFYGLLRHPRPAVDIVSVMLAGRWPDKWPLTYVARKYVLVDPTMRY 81 Query: 80 FNSGLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 P W+ + + + G FP+ G + Sbjct: 82 LGQAQRPFRWRDAMAALKGDPLRRRMEQMMADARANGLVDGYIFPIFGRSGLLGTMTIGG 141 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYT 190 + L+ + +V LEL + LT RE L +G T Sbjct: 142 NSVDLSPAELSLFDAVAKKVFWRLLELRDEARPLEEAPAIEAKLTRREIEVLNHLAEGMT 201 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S +I+ L +S HTV+ Y+ S KL+A NR +A A R G + Sbjct: 202 SMDISRTLKISNHTVDWYMNSIQDKLNARNRQHIVAIAFRNGLV 245 >gi|307315521|ref|ZP_07595072.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306898775|gb|EFN29433.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 243 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 86/240 (35%), Gaps = 11/240 (4%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S + T + + +L P L + R + + S Y Sbjct: 7 LSLSLRTLQSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGR---SGLYPDYCTTYPGK 63 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 +I D + G LP+ W S+ + + +L + G+ Sbjct: 64 WTEIYVDKRYFDIDPVIDVIRWGFLPVDWSSLDRRSAQ--AYRLFKEARSYDIGPHGLTI 121 Query: 121 PVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNL 174 P+R + + ++ L I E + + L + R L Sbjct: 122 PIRGSKGERCLFSVSSNLPKRDWSRLRASSIHELQILSHYLHETTLSASGLREVGRYRTL 181 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RET CLQL G S++IA LG+S + V YL SA VKL+A QA+AKA I Sbjct: 182 SRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKASFLELI 241 >gi|295700193|ref|YP_003608086.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439406|gb|ADG18575.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 234 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 68/231 (29%), Gaps = 13/231 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ E + + + + Y + Sbjct: 7 AADEAEWFGVITGLAETWGFDRILVAMLPRPTMRLE---DAYLRSTYAPAWRQTYDEQGM 63 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + H S P+IW E + Q AG+ P+ + G Sbjct: 64 VHIDPTVAHCLSRSAPLIWT---PEIFATPAQQSLYEEARSYGLGAGVTLPIHGPNQEAG 120 Query: 131 YVIFTSEFLMLA-NEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQ 183 + F ++ + A ++ D + L S LT RE CL+ Sbjct: 121 MMCFVNDDKPADGFRRHVNAALPNLVLLRDLVIDTSKQHLDSHAQSLMPKLTPRERECLK 180 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ L S VN ++ + K +R A A + G I Sbjct: 181 WTARGKSTWEISHILSCSEAVVNFHMKNIRAKFGVNSRRAAAVIAAQLGLI 231 >gi|167581251|ref|ZP_02374125.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167619336|ref|ZP_02387967.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257138549|ref|ZP_05586811.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 237 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%) Query: 3 ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 E+ L G + S E + + F + +P + I N+ Sbjct: 6 EDLLAGLDSARSEDEAFRSIETAATALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 62 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L H P++ + G A Sbjct: 63 KRRYVEAGFLDVDPILAHGRRSQQPVVLNETLFAS-----SHQMWVEAQSFGLRFGWAQS 117 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174 + G + + + + + + + L K + R L Sbjct: 118 SFDAYGGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 176 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 177 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|209809715|ref|YP_002265254.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|21311436|gb|AAM46717.1|AF452135_2 LuxR1 [Aliivibrio salmonicida] gi|208011278|emb|CAQ81719.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 248 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 9/229 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 SSS +++ L + N + N Y + + + + L NY D + Sbjct: 19 SSSNDQINQCLIEVANTL---NCEYYLFSIISNKSMIKPDVLILDNYPQKWRDHYDETNL 75 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + + PI+W ++T+ + ++ L ++G +FP+ G Sbjct: 76 IKYDPIVDYCFFNHSPILWDIFGKKTLKTNKPN-VIQEAKSLGLYSGFSFPIHSVNGSFG 134 Query: 131 YVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + + ++ + + K + + +LT+RE CL A Sbjct: 135 MISFAHSNKKQSTDCLFSTACMYIPLIIPALLDSYYRINKNNTESTHDLTKREKECLAWA 194 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +S EI+ LG + TV +L ++ KL NR Q+++KAI G I Sbjct: 195 CEGKSSWEISIILGCTERTVAFHLTNSQTKLGTTNRCQSVSKAILTGAI 243 >gi|83716740|ref|YP_439002.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|167577397|ref|ZP_02370271.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167615548|ref|ZP_02384183.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142109|ref|ZP_05590371.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650565|gb|ABC34629.1| transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 230 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 69/221 (31%), Gaps = 5/221 (2%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + + I + +Y + + D Sbjct: 11 DVRTLIETFRQAALQIGYQHHAIVELSGTSHPASIDVVSLHYPSEWVEHYTRNDYFTIDP 70 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 P W I + + + GI+ P+ + V + Sbjct: 71 VHRAAFRYSTPFPWNDIATSNL---RERHLLMEAEDAGLDNGISIPLHQPLGRVLLVSLS 127 Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193 + A+ Q + + + +LT+RE CL G +S Sbjct: 128 GTAPTHDADAKWRNAYLLGMQFNLQLQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWV 187 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L +S +TV+ ++ +A KL+ +R A KA R G I Sbjct: 188 IANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|307302498|ref|ZP_07582255.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307316172|ref|ZP_07595616.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|86278997|gb|ABC88593.1| N-acyl homoserine lactone receptor [Sinorhizobium meliloti] gi|306898012|gb|EFN28754.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306903168|gb|EFN33758.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 74/235 (31%), Gaps = 12/235 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + +E+ P + +R + + + P R + + I Sbjct: 14 EEMKTREEILPEFERLLDRCGFDFYGIVRQPKPHENPLR---LLLAGRWPEGWPQIYIRK 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + W+ + + F G FPV Sbjct: 71 KYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGYIFPVHGR 130 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTERET 179 G + + L+ + ++ LEL + S +T RE Sbjct: 131 RGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRREM 190 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG TS +I + L +S HTV+ Y+ KL A NR +A A R G I Sbjct: 191 EALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLGLI 245 >gi|206576935|ref|YP_002237709.1| regulatory protein SdiA [Klebsiella pneumoniae 342] gi|290508769|ref|ZP_06548140.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55] gi|206565993|gb|ACI07769.1| regulatory protein SdiA [Klebsiella pneumoniae 342] gi|289778163|gb|EFD86160.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55] Length = 240 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 12/217 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 +Q +A + YT+ P + + Y D L Sbjct: 30 LQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAENYFAIDPVLR----- 84 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT------SE 137 + + E + G+ + L H G++ + Sbjct: 85 PENFMRGHLPWEDGLFRDAAALWDGARDHGLKKGVTQCLTLPNHAQGFLSVSANNRLPGS 144 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + E+ + + LE + + RE L+ +G TS E+A Sbjct: 145 YPDDELEMRLRMLTELSLLALLRLE-DEMVMPPEMKFSRRELEILKWTAEGKTSAEVAMI 203 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S +TVN + + K +A N+ Q A+ G I Sbjct: 204 LSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240 >gi|288934569|ref|YP_003438628.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|288889278|gb|ADC57596.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22] Length = 240 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 12/217 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 +Q +A + YT+ P + + Y D L Sbjct: 30 LQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAENYFAIDPVLR----- 84 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT------SE 137 + + E + G+ + L H G++ + Sbjct: 85 PENFMRGHLPWEDGLFRDAAALWEGARDHGLKKGVTQCLTLPNHAQGFLSVSANNRLPGS 144 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + E+ + + LE + + RE L+ +G TS E+A Sbjct: 145 YPDDELEMRLRMLTELSLLALLRLE-DEMVMPPEMKFSRRELEILKWTAEGKTSAEVAMI 203 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S +TVN + + K +A N+ Q A+ G I Sbjct: 204 LSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240 >gi|43288|emb|CAA27327.1| unnamed protein product [Escherichia coli] Length = 241 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 82/236 (34%), Gaps = 14/236 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI-AFPVR 123 D L N ++W Q G+ + Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVHSVFNA 125 Query: 124 LGFHKNGYVIFTS---EFLMLANEVI-IEAHGACYQVITDFLEL-FKKRSSAARNLTERE 178 G++ F+ + + ++ + ++ + + + L + + N ++RE Sbjct: 126 AQTGALGFLSFSRCSRREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKRE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 186 KEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 241 >gi|71733308|ref|YP_273861.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553861|gb|AAZ33072.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|320327729|gb|EFW83737.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. race 4] Length = 233 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R L NY Sbjct: 10 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 64 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 65 DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 123 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I A L+ RET L+ Sbjct: 124 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 183 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE +S TV ++ + + KL+ QA+ KAI G + Sbjct: 184 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINIGMV 233 >gi|150398334|ref|YP_001328801.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150029849|gb|ABR61966.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 12/235 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + +E+ P + +R + + + P R + + I Sbjct: 14 EEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLR---LLLAGRWPEGWPQIYIRK 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125 D + W+ + + S+ F G FPV Sbjct: 71 KYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLFDGYIFPVHGR 130 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTERET 179 G + + L+ + ++ LEL + S +T RE Sbjct: 131 RGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRREM 190 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG TS +I + L +S HTV+ Y+ KL A NR +A A R G I Sbjct: 191 EALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAFRLGLI 245 >gi|170693116|ref|ZP_02884277.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170142114|gb|EDT10281.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 255 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 71/228 (31%), Gaps = 10/228 (4%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + + F I R + Y + + Sbjct: 28 AADEAAWFGAVADLAETWGFDRLLIAMLPRPTIRLEDAYVRSTYAPAWRRTYDEQGLVHI 87 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P++W E I + + AG+ P+ + G + Sbjct: 88 DPTVAHCATRSTPLVWS---PEIFITAPQRSMYEEARAHGLRAGVTLPIHGPNQEAGMMC 144 Query: 134 FTSEFLMLANEVI-IEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQLAG 186 F ++ I+ ++ D L + LT RE CLQ Sbjct: 145 FVNDANPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHTQTLLPKLTPRERECLQWTA 204 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ L S VN ++ + KL +R A A + G I Sbjct: 205 RGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 252 >gi|153007543|ref|YP_001368758.1| autoinducer-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559431|gb|ABS12929.1| Autoinducer-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 235 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 14/234 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + S + L I + FA + + + D Sbjct: 8 ESMQSADDAGQLLEYIGTYARQCGFAHTAYVMRVPLLNGVVKWLSFGSLPQEWTDHYTAR 67 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + + P++W S + GI+ P Sbjct: 68 KYADVDPLVRKALNSIEPLVWSSKLFAEAPQ-----IWADAQRFGIKVGISQPCWAAQGV 122 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARN------LTERETS 180 G + F L++ I Q+ + L L + N LT RE Sbjct: 123 FGMLSFLRTGPALSSGEISML-RRQMQIAANLLHLSMYEHLDVPTMNCVSEVNLTMRERE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235 >gi|59940155|gb|AAX12616.1| LuxR-type transcriptional regulator [Aeromonas sp. 13m] Length = 260 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 9/231 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ + L GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183 + F + ++++++E + + + + LT+RET CL Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS +IA L ++ TVN +L T K ++NR QAIAK + G + Sbjct: 193 CASEGKTSGDIACILRITERTVNYHLNHVTRKTVSMNRYQAIAKGVSSGIL 243 >gi|293393463|ref|ZP_06637774.1| transcriptional activator protein LasR [Serratia odorifera DSM 4582] gi|291424064|gb|EFE97282.1| transcriptional activator protein LasR [Serratia odorifera DSM 4582] Length = 237 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 75/230 (32%), Gaps = 15/230 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + +L L I + L D + L N+ + L Sbjct: 12 RIDNFSQLDEVLAERCQAIGFDGYLLGVTGHGRDINQA----VVLTNHPPAWRETYTRLG 67 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + H GL P+ W + I + + G++FP+ + Sbjct: 68 YINTDPTVAHCLGGLFPLEW----QACPITAETAPFWQEASYYGLAHGVSFPLHGVQGEQ 123 Query: 130 GYVIFT-SEFLMLANEVIIEAHGACYQVITDFLE------LFKKRSSAARNLTERETSCL 182 G + + +++ ++ D L L +K A L+ RE Sbjct: 124 GILSLSLGRQRQRDYRELMQQRWGELYILRDILLHHCIRLLDEKNKLTATVLSPREIEVC 183 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + G T+ EI+ L S VN + + K + +R AI KAI G Sbjct: 184 KWFTIGKTTWEISRILNCSEANVNFHFKNIRRKFNVSSRGAAIIKAIASG 233 >gi|330891500|gb|EGH24161.1| LuxR transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 247 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 15/229 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I A L+ RET L+ Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G + EIAE +S TV ++ + + KL+ QA+ KAI G Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGM 246 >gi|167840217|ref|ZP_02466901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia thailandensis MSMB43] Length = 230 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 5/221 (2%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + + I + +Y + + D Sbjct: 11 DVRTLIETFRQAALQIGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYTRSDYFAIDP 70 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 P W I + + + GI+ P+ + V + Sbjct: 71 VHRAAFQYSTPFSWNDIATSNL---RERHLLMEAEDAGLDNGISIPLHQPLGRVLLVSLS 127 Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193 + A+ Q F + + +LT+RE CL G +S Sbjct: 128 GTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCSPIPPSVHLTDREQMCLTWVARGKSSWV 187 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L +S +TV+ ++ +A KL+ +R A KA R G I Sbjct: 188 IANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|240141366|ref|YP_002965846.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|240011343|gb|ACS42569.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] Length = 165 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 65/164 (39%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 Y D + S W I+ V++ + + G G P+ + G Sbjct: 1 MYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERG 60 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + F L ++ V+ L + S LT RE LQ +G T Sbjct: 61 GLTFAGRQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKT 120 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 121 DWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164 >gi|45259344|emb|CAF32980.1| uR protein [Pseudomonas putida] Length = 238 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 72/234 (30%), Gaps = 12/234 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + ++ L ++ ++ NF I Q + +Y Sbjct: 7 DELLRLNEMERFEDWLAHLKILTRKLGYSNFL---IGLKPAPTDANQEVLIYSDYPDAWR 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + D + H + ++W ES G+A P+ Sbjct: 64 TRYDAESYAAVDPVVQHCLNANRALLWDRDNYRRPSESE---FFEEAAAHGLQQGLALPL 120 Query: 123 RLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + G + E + A + L+ + S+ LT R Sbjct: 121 HGPRGEAGMLCLKPSESGPQATATMIESLPTATLLRDYAMEGMLKARIECSTPVH-LTSR 179 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E LQ + G T+ EI+ L + ++ + + K +R A+ KAI+ Sbjct: 180 EKEVLQWSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQ 233 >gi|85713529|ref|ZP_01044519.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] gi|85699433|gb|EAQ37300.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] Length = 191 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 2/183 (1%) Query: 52 CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 LH + + + D + N+ P +W ++ + + Sbjct: 10 VVLHRWPKAWSERYFTQGYLFDDPTIQRVNTSTEPFLWSELEPSYRNTPAPTRVMGEARE 69 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 G P+ + SE + +V + L +K + A Sbjct: 70 FNLGCGFTVPMITLDGQAAGFSLASERADVPPKVRRQLQLIAMHAFARALA--QKYNPAP 127 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT RE LQ +G + EI L +S H V+ KL+A NR Q A A+R Sbjct: 128 VNLTPREMDILQWMAEGKSDWEIGVILKVSEHFVDKIARQLRAKLNATNRTQTAATALRH 187 Query: 232 GYI 234 I Sbjct: 188 NLI 190 >gi|53716260|ref|YP_106160.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53722590|ref|YP_111575.1| N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67640560|ref|ZP_00439362.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|76818021|ref|YP_335776.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|124383134|ref|YP_001025820.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126442943|ref|YP_001063209.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126446904|ref|YP_001077903.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|126457976|ref|YP_001076161.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|134281979|ref|ZP_01768685.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|167002385|ref|ZP_02268175.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|167724282|ref|ZP_02407518.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei DM98] gi|167743255|ref|ZP_02416029.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 14] gi|167820433|ref|ZP_02452113.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 91] gi|167828803|ref|ZP_02460274.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 9] gi|167850259|ref|ZP_02475767.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei B7210] gi|167898862|ref|ZP_02486263.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 7894] gi|167907182|ref|ZP_02494387.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei NCTC 13177] gi|167915548|ref|ZP_02502639.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 112] gi|167923392|ref|ZP_02510483.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei BCC215] gi|217425142|ref|ZP_03456637.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|226195987|ref|ZP_03791573.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|237510506|ref|ZP_04523221.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313819|ref|ZP_04812836.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|254176584|ref|ZP_04883242.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|254185131|ref|ZP_04891720.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|254186897|ref|ZP_04893413.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|254194457|ref|ZP_04900889.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|254201028|ref|ZP_04907393.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|254204993|ref|ZP_04911346.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|254264301|ref|ZP_04955166.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|254301416|ref|ZP_04968860.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|254359112|ref|ZP_04975384.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|52213004|emb|CAH39042.1| putative N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52422230|gb|AAU45800.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|76582494|gb|ABA51968.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|126222434|gb|ABN85939.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126231744|gb|ABN95157.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|126239758|gb|ABO02870.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|134246508|gb|EBA46596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|147748640|gb|EDK55715.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|147754579|gb|EDK61643.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|148028299|gb|EDK86259.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|156105360|gb|ABU49179.1| BpsR3 [Burkholderia pseudomallei] gi|157810944|gb|EDO88114.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|157934581|gb|EDO90251.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|160697626|gb|EDP87596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|169651208|gb|EDS83901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|184215723|gb|EDU12704.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|217391747|gb|EEC31774.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|225931880|gb|EEH27881.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|235002711|gb|EEP52135.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521303|gb|EEP84756.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|242137058|gb|EES23461.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|243061949|gb|EES44135.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|254215303|gb|EET04688.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|261827149|gb|ABM99449.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 230 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 69/221 (31%), Gaps = 5/221 (2%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + + I + +Y + + D Sbjct: 11 DVRTLVETFRQAALQIGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYTRNDYFAIDP 70 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 P W + + + GI+ P+ + V + Sbjct: 71 VHRAAFRYSTPFSWNDV---ATANLRERHLLMEAEDAGLDNGISIPLHQPLGRVLLVSLS 127 Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193 + A+ Q F + + + +LT+RE CL G +S Sbjct: 128 GTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWV 187 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L +S +TV+ ++ +A KL+ +R A KA R G I Sbjct: 188 IANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|301382983|ref|ZP_07231401.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato Max13] gi|302062866|ref|ZP_07254407.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato K40] gi|302131657|ref|ZP_07257647.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 247 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A +T A R+ L NY Sbjct: 24 LRQLIEDFENDLHHIGEFTYAYFTTPKA-----RKAKPIILSNYPDSWLKSYIASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDF---LELFKKRSSAAR-NLTERETSCLQL 184 + + I + + + + A L+ RET L+ Sbjct: 138 LCNAKQQHDFDQRIRDKTADIQMSLIRFHDRLIKTRAPHELFPPTANCKLSSRETDILKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIAE +S TV ++ + + KL+ QA+ KAI+ G + Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247 >gi|28871016|ref|NP_793635.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] gi|13182979|gb|AAK15017.1|AF234628_3 PsmR [Pseudomonas syringae pv. maculicola] gi|28854266|gb|AAO57330.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] Length = 247 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A +T A R+ L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFTTPKA-----RKAKPIILSNYPDSWLKSYIASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDF---LELFKKRSSAAR-NLTERETSCLQL 184 + + I + + + + A L+ RET L+ Sbjct: 138 LCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHELFPPTANCKLSSRETDILKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIAE +S TV ++ + + KL+ QA+ KAI+ G + Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247 >gi|187918993|ref|YP_001888024.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717431|gb|ACD18654.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 234 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 66/231 (28%), Gaps = 13/231 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ E + + + + R + Y + Sbjct: 7 AADEAEWFGAIAGLAETWGFDKLLIAMLPRPT---IRLEDAYVRSTYSPTWRRTYDEQGL 63 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + H + P+IW + + +GI P+ + G Sbjct: 64 VHIDPTVAHCATRATPLIWS---PDIFKTAPQLSMYEEARAHGLRSGITLPIHGPNQEAG 120 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCLQ 183 + F ++ V+ L L + LT RE CL+ Sbjct: 121 MMCFVNDNNPNDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLK 180 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ L S VN ++ + K +R A A + G I Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 231 >gi|149187186|ref|ZP_01865484.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] gi|148838722|gb|EDL55661.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] Length = 259 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 12/226 (5%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 ++LS +L + I ++ L+ ++ + L N L Y Sbjct: 23 FEDLSGKLAEVTEVIGFEHY-LFAVSV--PVTVMRAENVVLTNQPLAWRQFYEDNEVMYF 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + +LP+ W+S+ + + ++L GI P+R G + Sbjct: 80 DQVVLHCRNSMLPLQWRSLLANDIPDDKN--VIKLASDFGLGDGITIPLRANHGCLGLIS 137 Query: 134 FT---SEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAG 186 F+ + I+ + + + +K+ + +LT RE CL Sbjct: 138 FSNRKGTRKIDHESTILSTYVGSLVADYINDIRNHVCEKQFGQVKSSLTLREQICLAWVA 197 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G +S E+A+ +G S TVN ++ +A+ KL+A +R QA++KA+ G Sbjct: 198 EGKSSWEVAQIIGCSERTVNFHIQNASEKLNAFSRTQAVSKALLTG 243 >gi|83716463|ref|YP_440275.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650288|gb|ABC34352.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 425 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 17/217 (7%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 ++ +NFA C L + + + D + H + Sbjct: 218 RQLGFKNFAY-----RHQISGAASSRCMLDGFPTEWRLRYDAADYLSIDPVVQHCRCRTV 272 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL------ 139 P+IW T +L G++ PV + ++ Sbjct: 273 PLIWHDELYTTG---RAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAN 329 Query: 140 --MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + + + + L+ +R + LT RE LQ AG G T+ EI++ Sbjct: 330 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 388 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 389 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 425 >gi|115360652|ref|YP_777789.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285980|gb|ABI91455.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 237 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 65/219 (29%), Gaps = 14/219 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + S E ++ I F +P ++ + N+ + Sbjct: 12 IEATHSEHEAFGKIASAVKEI---GFEYSAYCLQTPWPLSRRKVLVFSNFPEPWQRRYHD 68 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D L P+IW E + G + Sbjct: 69 ARYIDVDPLLRRGRQSYAPVIWSDAVFEGTPQ-----LWEEAQAHGLRYGYSLAAVSNCG 123 Query: 128 KNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181 +G + L + ++ + S LT+RE Sbjct: 124 VSGMMSMARSHTPLTVRELQQQELKMRWLVNAAHLAITRAVLPKLSPEGDIELTDREVEV 183 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+ DG T+ EI+ + +SV+TVN ++ +A KL+ N Sbjct: 184 LKWVADGKTAAEISMIMLISVYTVNFHVKNAVTKLNTSN 222 >gi|115359785|ref|YP_776923.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285073|gb|ABI90589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 229 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 74/225 (32%), Gaps = 10/225 (4%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + EL L I + + + + + L NY + Sbjct: 11 MDELGRMLIDIGHLAGFDHVCYQEYRMSGGTLKNCRT---LSNYPEAWLSLYRDRAYLTI 67 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D H S L+P+IW + + + G++FP V Sbjct: 68 DPIAQHALSSLMPLIW---GDRIFATTEQREFRDEGRIYGLNDGVSFPAHSRHGDVACVS 124 Query: 134 FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 F + L + ++ D + S A L+ RE L+ +G Sbjct: 125 FVRQARALDDGDMPCDVPSWGALVANLMLDACRRLEAVQSDAPCLSTRELEILKWVAEGK 184 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +I+ + L+ H V ++ S K D R QA+ A RFG + Sbjct: 185 STWDISRIVSLTEHGVLHHIRSIMKKFDVPTRRQAVLMASRFGLL 229 >gi|152970958|ref|YP_001336067.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955807|gb|ABR77837.1| transcriptional activator for cell division (LuxR/UhpA family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 228 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ +E+ L Q +A + YT+ P + + Y Sbjct: 6 QSMATGEEVYNLL---QRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAE 62 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + + G+ + L H Sbjct: 63 NYFAIDPVLR-----PENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHA 117 Query: 129 NGYVIFTSEFL-----MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G++ ++ + ++T + + RE L+ Sbjct: 118 QGFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILK 177 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS E+A L +S +TVN + + K +A N+ Q A+ G I Sbjct: 178 WTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 228 >gi|116254615|ref|YP_770451.1| putative transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|417645|sp|Q03316|RHIR_RHILV RecName: Full=Regulatory protein rhiR gi|7259800|gb|AAA26360.2| rhiR [Rhizobium leguminosarum] gi|115259263|emb|CAK10396.1| Putative transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 247 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 7/228 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ L L + F+ + I+ R L N+ + D Sbjct: 22 AKSKDDV---LLLFGKISQYFGFSYFAISGIPSPIERIDSYFVLGNWSVGWFDRYRENNY 78 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + + +W + ++ + + G + P+ Sbjct: 79 VHADPIVHLSKTCDHAFVWSEALRDQKLDRQSRRVMDEAREFKLIDGFSVPLHTAAGFQS 138 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAG 186 V F +E + L+ + + ++ A +T RE + Sbjct: 139 IVSFGAEKVELSTCDRSALYLMAAYAHSLLRAQIGNDASRKIQALPMITTREREIIHWCA 198 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA LG S T+ + + KL+ VN Q IA++ R I Sbjct: 199 AGKTAIEIATILGRSHRTIQNVILNIQRKLNVVNTPQMIAESFRLRII 246 >gi|331019185|gb|EGH99241.1| transcriptional regulator PsyR [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 247 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 75/230 (32%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A +T A R+ L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFTTPKA-----RKAKPIILSNYPDSWLKSYIASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQL 184 + + I A +I L K R+ A R L+ RET L+ Sbjct: 138 LCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHELFPPTANRKLSSRETDILKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIAE +S TV ++ + + KL+ QA+ KAI+ G + Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247 >gi|83720643|ref|YP_442349.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83654468|gb|ABC38531.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 241 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%) Query: 3 ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 E+ L G + S E + + F + +P + I N+ Sbjct: 10 EDLLAGLDSARSEDEAFRSIETAATALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 66 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L H P++ + G A Sbjct: 67 KRRYVEAGFLDVDPILAHGRRSQQPVVLNETLFAS-----SHQMWVEAQSFGLRFGWAQS 121 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174 + G + + + + + + + L K + R L Sbjct: 122 SFDAYGGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 180 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 181 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240 >gi|172152203|emb|CAP91064.1| BraR protein [Burkholderia kururiensis] Length = 234 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 10/228 (4%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F+ + R + NY Y Sbjct: 7 ASDETQWFDAVAGLAGSWGFSQVLLAILPRPGMRLEDAYVRSNYASSWRQAYTDQGFAYI 66 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H P++W T + S AG+ P+ + G + Sbjct: 67 DPTVSHCTKHSSPLVWSPDLFATTPQKS---MYEEASAHGLRAGVTLPIHGPRQEAGMLC 123 Query: 134 FTSEFLMLA-NEVIIEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQLAG 186 F ++ I+ ++ D L + LT RE CL+ Sbjct: 124 FVNDSNPNDKFWQHIDTALPNLVLMRDLVIDTSQRHLSAHAQTLIPKLTPRERECLKWTA 183 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ L S VN ++ + K +R A A + G I Sbjct: 184 LGKSTWEISHILNCSEAVVNFHMKNIRAKFGVNSRRAAAVIATQLGLI 231 >gi|162148611|ref|YP_001603072.1| LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787188|emb|CAP56781.1| putative transcriptional regulator, luxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 8/227 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++S++ EL I A + L+ Y + Sbjct: 18 RRSTTASELRAAFVRATKSISDCYIASGRVKGGAPVNAETALV----TYPDAWLKHYHER 73 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + +P W+++Q+ +V + L + GI + Sbjct: 74 KYLDIDPTIVNAGRSYVPYRWEALQDISVKQRQMFLDI---AETGIKGGITMSLHTPDRA 130 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGD 187 F + + ++ Q +L + + RE CL Sbjct: 131 AFVTSFAFTKAVSEDRDLVALGFINSQYYETLSKLSEAELPGPVPTFSRREKECLLWVSR 190 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +I+ LG+S +T+NAYL + +KL RIQA+ +AI I Sbjct: 191 GKTTWDISVILGISENTINAYLKNVILKLGCSGRIQAVLRAIDLNLI 237 >gi|167563421|ref|ZP_02356337.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167570595|ref|ZP_02363469.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 237 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 16/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S E + + F + +P + I N+ Sbjct: 15 ARSEDEAFRSIEAATTALD---FEYCAYALRVPWPLSRPRIETRSNFPEQWKRRYGEAGF 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D L H PI+ + G A + G Sbjct: 72 LDVDPILAHGRRSQQPIVLTEALFAS-----AHQMWVEAQSFGLRFGWAQSNFDAYGGMG 126 Query: 131 YVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + + + + + L K + R LTERE L+ Sbjct: 127 MLALVRSSEPMTEAELGAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGLTEREVEVLK 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 186 WAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|317047630|ref|YP_004115278.1| LuxR family transcriptional regulator [Pantoea sp. At-9b] gi|316949247|gb|ADU68722.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 240 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 71/238 (29%), Gaps = 13/238 (5%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 E + + +++ +L L Q I+ F + P + I Y D Sbjct: 11 GETEIQFQAVTAVLQLKALL---QKHIETLGFDYFAFLIQHPVPFTRPRIFLFSTYPEDW 67 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L + W +G + Sbjct: 68 VKHYESENYYAVDPVLLLCQRPGHGVEWTRDLFTGAGN-----LWAEANAYGLMSGFSCS 122 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTE 176 G + S + +E + + L + ++ + A + ++ Sbjct: 123 AMASNRAIGILSIASGQQSKTQHLRVELEVKLHFLAELSLRVLERLNDNAMVVLSNDFSQ 182 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ +G TS EI+ L +S HTVN + + + + N+ Q A G I Sbjct: 183 RELEILKWTAEGKTSAEISLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240 >gi|218674909|ref|ZP_03524578.1| transcriptional activator protein [Rhizobium etli GR56] Length = 241 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 81/233 (34%), Gaps = 11/233 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 S +LQ+L L +++ + L+ + + L+ Y + Sbjct: 14 ISASPTLQDLETTLDEVRHIYAISHMVLH-VTRSSGMADSNPLLML--TYPPEWVKQYRD 70 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + G LP+ W + + ++ + + G+ PVR Sbjct: 71 RDYFSIDPVVRLGRRGFLPVEWSASKWDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQG 128 Query: 128 KNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSC 181 + TS + + + + + + L + + L+ RE C Sbjct: 129 ERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRVMVLSGMREIADFPQLSRRELQC 188 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ G +++I +L +SV V YL SA KL +A+AKA I Sbjct: 189 LEMTASGLMAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKATALELI 241 >gi|161724871|emb|CAO85746.1| rR protein [Pseudomonas putida] Length = 240 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 72/229 (31%), Gaps = 20/229 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 EL +L +++ +A Y R + NY D Sbjct: 23 DELQLQLCDVKD----LKYAYYAATH-----NRNVEPIIISNYPPSWVKSYKDNKSYLID 73 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + H + P W + E G R +G F +R + Sbjct: 74 PIIKHGLREITPFSWHEALANSGPE--GVDFFRRATRYRICSGTTFTLRDASGTFCALSV 131 Query: 135 TSEFLMLANEVIIE-----AHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLA 185 + + + + + + K S+A L+ RE LQL Sbjct: 132 CDAGSQVDFDRRMAKQQSQLQMLLIKFHSWLMTSRKTDQLFSSAADGPLSTRELGVLQLV 191 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA G+S TV ++ + + KL N QA+ +A R G I Sbjct: 192 MRGKTYREIATDCGISERTVKFHMSNISGKLQVGNAKQAVYEAKRQGII 240 >gi|145666435|gb|ABP88722.1| transcriptional activator protein [Pseudomonas corrugata] Length = 242 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 12/235 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 EN ++G S +E + L I +R+ FA + P I NY + Sbjct: 17 ENNISGV---SEEEYTEILGWIFSRLGIEKFAYVHL---EPTPFNNSKISIYSNYPSEWV 70 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D D + + P W I E G P+ Sbjct: 71 DTYRKNSLYKSDPVMANTAITATPFFWNEIPAEIDNNPE---IFDQSASYGIKQGYTVPI 127 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERET 179 G + +SE +I+ ++ + VI + + + L+ RE Sbjct: 128 HEPGRAFGSLHLSSEENDPDFPIIVRSNLFIIKTLSVIANQYRPMETTIESNLKLSPREI 187 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G +EI + ++ TV + T K+D N QA+ KA++ ++ Sbjct: 188 EFLRWLALGKNYKEIGLIMNITERTVKFHAKQMTEKMDCTNVKQAMIKAVQLNFV 242 >gi|83941288|ref|ZP_00953750.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] gi|83847108|gb|EAP84983.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] Length = 244 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 4/228 (1%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ SS+ L + R ++I+ + + + Sbjct: 11 REVSSVSALWLLVQRFAKAQDFRTVTYHSIDVQSLGDSSFGAVAI--GIPAEFHRMYTEE 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D F S + P W+ + + T + + + G+ V + Sbjct: 69 HLYLDDPFPPFAASQITPFFWRDLPQLTTLTEKQKAYLNRAREFGFADGLVCQVFGPQAR 128 Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 N V F + ++ +++ H A F L ++ R L+ RE L+ Sbjct: 129 NALVSIGFHHDRPRPSDAEVLDLHVASQFAHMRFCALVAGPAAPNRRLSPRELELLRWIA 188 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA+ +G+S HTV+ + KLD +R +A + + FG I Sbjct: 189 RGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGVAFGLI 236 >gi|187927560|ref|YP_001898047.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187724450|gb|ACD25615.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 253 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 81/242 (33%), Gaps = 22/242 (9%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALD----------FPRRQQLIC--ELHNYD 58 + S E++ + + F + A D + L Y Sbjct: 14 AGSHAEIAAFMERHAGNLGYGRFFYSPLLVAGDARHFFKDDHNVVAAEMLYTKNIFSTYP 73 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 D + + LPI W + ++++ GI Sbjct: 74 ASWIRRYQEAGHVAADPVVKLITTSNLPIHWDADD----LQAARSPVFDEAREHGLATGI 129 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLELFKKRS-SAAR 172 P+ H TS+ ++ +A + L S + Sbjct: 130 TIPINGFDHTRALFSVTSDQAPERSQRHTDAISGLAVLTALHLHEAVRRLDASMSNAPIP 189 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE CLQ A G TS EIA L +S TV ++G+AT KL A NR QA+A+AI Sbjct: 190 SLTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQAVARAISLR 249 Query: 233 YI 234 I Sbjct: 250 LI 251 >gi|288733198|emb|CBI71275.1| UnaR protein [Burkholderia unamae] Length = 234 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 68/224 (30%), Gaps = 10/224 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + + + F+ + R + NY N Y D + Sbjct: 11 AAWFDAVTKLASSWGFSQLMLAILPRPGMRLEDAFIRTNYSAAWRQTYNDHGMAYFDPTV 70 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 H + P+IW E Q AGI P+ + G + F ++ Sbjct: 71 THCTTRSSPLIWS---PELFATEQQQSMYEEARAYGLRAGITLPIHGPRQEVGMLCFVND 127 Query: 138 FLMLA--NEVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + A + T L S LT RE CL+ G + Sbjct: 128 ASPSDGFWDDVNRALPNLVLLRDLVLDTSHRHLTDHVQSLIPKLTPREKECLKWTALGKS 187 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EI+ L S VN ++ + K +R A A + G I Sbjct: 188 TWEISHILNCSEAVVNFHMKNIRGKFGVNSRRAAAVIATQMGLI 231 >gi|163760010|ref|ZP_02167094.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162282968|gb|EDQ33255.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 247 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 70/222 (31%), Gaps = 9/222 (4%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 + + F + + + + D ++ D L + Sbjct: 25 ERLSKVVAGLGFDFFKLVRQAGPESGAVDMILAEQWPSDWPELYAKRKYATIDPTLRYLG 84 Query: 82 SGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 W+ +E + + G FPV GY+ + Sbjct: 85 HSQGGFRWREPMEAYQEDPHYKRMERMMADARRFGLEDGYVFPVHGRRGLVGYLTIAGGY 144 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSE 192 + L + + + +EL + +T+RE L+ G G TS Sbjct: 145 VELLRSEMAMMDALAKKAFWELVELLDPAAHERLNRPVTMQMTKREMQTLEYLGCGMTSN 204 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+ LGLS HTV+ Y+ KL A NR +A A R G I Sbjct: 205 EMGTALGLSAHTVDWYMNGIQEKLHAKNRHHVVAIAFRLGLI 246 >gi|328542321|ref|YP_004302430.1| N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [polymorphum gilvum SL003B-26A1] gi|326412068|gb|ADZ69131.1| Putative N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [Polymorphum gilvum SL003B-26A1] Length = 230 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 66/228 (28%), Gaps = 7/228 (3%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 +++++ + F + + L + Sbjct: 1 MEDVASLEAAFSKSLWDLGFREWAYQVIRTDALPDEKPLILTTFPDAWYSHYIDNGYHRV 60 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + S + P W ++ + G+ P+ Sbjct: 61 DPVILNGPSQVAPFTWSAMSFGMEPSPEQRRLFAEATEFGLGEGVGIPIHGARGSLAMAS 120 Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAG 186 S+ ++ + H EL + +LT RE CL Sbjct: 121 MVSDHGARGLARLMSTVGKDVHLMSLAFHNHARELLALGRSGRTTVSLTRRERECLLWIA 180 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ LG+S TV +L + K+ N A+ KAI G I Sbjct: 181 AGKSAWEISRILGISARTVYFHLDNVRAKMGVTNVYHAVVKAIMEGMI 228 >gi|16519915|ref|NP_444035.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii NGR234] gi|2495427|sp|P55629|Y4QH_RHISN RecName: Full=Putative HTH-type transcriptional regulator y4qH gi|2182594|gb|AAB92463.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii NGR234] Length = 326 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 67/221 (30%), Gaps = 3/221 (1%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYGDD 75 L L + + A + S R + E+ NY + + Sbjct: 104 LFDLLSAFAFKFGCKWLAYGPLTSDHKALNRVKCDSEEILNYPDGWRERCLEMGYETIAP 163 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + G PI W + + + +GI P+R + F Sbjct: 164 VIKESRMGAGPIRWSDMYSDASTTEYERRMFDEAAMFGLRSGITVPLRGPRGSCAIMSFA 223 Query: 136 SE-FLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193 + I A ++ L+ RE C+ G +S + Sbjct: 224 RHCEREFHDRTIAYLQLAATHFHLRVAKIANLNAVQKIPALSLREKECVLWVARGKSSWD 283 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I + +S +TVN ++ + KL +R A KAI G I Sbjct: 284 IGVIMRISENTVNFHIKNVMRKLGTSSRTVAAIKAISLGII 324 >gi|330878281|gb|EGH12430.1| transcriptional regulator PsyR [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 247 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 73/230 (31%), Gaps = 15/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A +T A R+ L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFTTPKA-----RKAKPIILSNYPDSWLKSYIASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQL 184 + + I A +I L K R+ L+ RET L+ Sbjct: 138 LCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHELFPPTVNCKLSSRETDILKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIAE +S TV ++ + + KL+ QA+ KAI+ G + Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247 >gi|163744442|ref|ZP_02151802.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161381260|gb|EDQ05669.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 239 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 75/222 (33%), Gaps = 13/222 (5%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L+++ + N + P YD D + Sbjct: 23 EILNVLAQDMGLNNLSYL---GFHKDPCGGSDPVIHTTYDPAWLARYQEENYHLIDPVVD 79 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSE 137 G LP+ W + ++ + G++ P+R H + S+ Sbjct: 80 SALEGTLPVDWSELP---KVDRVTRDFFGEAMEFGVRQNGVSIPIRDHVHGKAVLTLNSD 136 Query: 138 FLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + I +A + +D + L+ RE L+ A G T+ Sbjct: 137 LRIHEWRKYKRGIIADAIYLGCLLQSDLVAGIAG-GEPGPRLSRREKEVLKWAAVGKTAW 195 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E A+ + +S TVN +L +A KLD N+ A+AKAIR I Sbjct: 196 ETAQIMTVSNSTVNHHLYNACAKLDVANKTHAVAKAIRAQLI 237 >gi|83854765|ref|ZP_00948295.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83842608|gb|EAP81775.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] Length = 248 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 4/228 (1%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ SS+ L + R ++I+ + + + Sbjct: 15 REVSSVSALWLLVQRFAKAQDFRTVTYHSIDVQSLGDTSFGAVAI--GIPAEFHRMYTEE 72 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D F S + P W+ + + T + + + G+ V + Sbjct: 73 HLYLDDPFPPFAASQITPFFWRDLPQLTTLTEKQKAYLNRAREFGFADGLVCQVFGPQAR 132 Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 N V F + + +++ H A F L ++ R L+ RE L+ Sbjct: 133 NALVSIGFHPDRPRPTDAEVLDLHVASQFAHMRFCALVAGPAAPNRRLSPRELELLRWIA 192 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA+ +G+S HTV+ + KLD +R +A + + FG I Sbjct: 193 RGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGLAFGLI 240 >gi|146454419|gb|ABQ41883.1| LuxR [Acidovorax citrulli] Length = 242 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 9/231 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPNI 67 ++ + EL + ++F+L + D + HNY Sbjct: 12 QALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPSRWVSHYIA 71 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D H + P W+ + + + G+ P+ Sbjct: 72 RNYYLEDPVRRHAPQAMSPYRWKDV---SAQGDREAHIMDEATDAGLADGLGLPIHEPGG 128 Query: 128 KNGYVIFTSEF---LMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQ 183 + S L V A + + + + A LT RE CL Sbjct: 129 RIFLATVASHQQLTLGNDACVRAYALVTAFHALYTMRFATEQTQIPTAVKLTSREAECLT 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S EI + +S HTVN +L +A K D +R+ A +A G I Sbjct: 189 WVAYGKSSREIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239 >gi|238895474|ref|YP_002920209.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae NTUH-K2044] gi|262043448|ref|ZP_06016571.1| regulatory protein SdiA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330001006|ref|ZP_08303866.1| regulatory protein SdiA [Klebsiella sp. MS 92-3] gi|238547791|dbj|BAH64142.1| LuxR/UhpA-family transcriptional activator for cell division [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039190|gb|EEW40338.1| regulatory protein SdiA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537810|gb|EGF64005.1| regulatory protein SdiA [Klebsiella sp. MS 92-3] Length = 240 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ +E+ L Q +A + YT+ P + + Y Sbjct: 18 QSMATGEEVYNLL---QRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAE 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + + G+ + L H Sbjct: 75 NYFAIDPVLR-----PENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHA 129 Query: 129 NGYVIFTSEFL-----MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G++ ++ + ++T + + RE L+ Sbjct: 130 QGFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILK 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS E+A L +S +TVN + + K +A N+ Q A+ G I Sbjct: 190 WTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240 >gi|170769400|ref|ZP_02903853.1| regulatory protein SdiA [Escherichia albertii TW07627] gi|170121724|gb|EDS90655.1| regulatory protein SdiA [Escherichia albertii TW07627] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 78/235 (33%), Gaps = 13/235 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ +E+ + ++++ + Y++ P + + NY Sbjct: 2 LLRFQRMEVAEEVYHEIEHQAHQLE---YDFYSLCVRHPVPFTRPKVAFYTNYPEAWVRY 58 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L + + Q G+ L Sbjct: 59 YQEKNFLAIDPAL-----NPENFRQGHLLWNDDLYREAQPLWEAARAHGLRRGVTHYFML 113 Query: 125 GFHKNGYVIFTSE---FLMLANEVI-IEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F+ + + + + ++ + + + L + + + ++RE Sbjct: 114 PNRALGFLSFSRSSTREIPVPGDELQLKMQLLVRESLMALMRLNDEMVMTPEMHFSKREK 173 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K++A N+ Q A G I Sbjct: 174 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 228 >gi|120612451|ref|YP_972129.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590915|gb|ABM34355.1| transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] gi|227167429|gb|ACP19743.1| LuxR-like protein [Acidovorax citrulli] Length = 242 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 72/231 (31%), Gaps = 9/231 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPNI 67 ++ + EL + ++F+L + D + HNY Sbjct: 12 QALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPSRWVSHYIA 71 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D H + P W+ + + + G+ P+ Sbjct: 72 RNYYLEDPVRRHAPQAMSPYRWKDV---SAQGDREAHIMDEATDAGLADGLGLPIHEPGG 128 Query: 128 KNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + S + A + + T + + A LT RE CL Sbjct: 129 RIFLATVASHQQLTLGNDACVRTYALVTAFHALYTMRFATEQTQIPTAVKLTSREAECLT 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S EI + +S HTVN +L +A K D +R+ A +A G I Sbjct: 189 WVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239 >gi|76811685|ref|YP_334182.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1710b] gi|124386221|ref|YP_001028861.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126450742|ref|YP_001081227.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|167003830|ref|ZP_02269610.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167720437|ref|ZP_02403673.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167816634|ref|ZP_02448314.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167825038|ref|ZP_02456509.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167846546|ref|ZP_02472054.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167895126|ref|ZP_02482528.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167903510|ref|ZP_02490715.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167919762|ref|ZP_02506853.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|242317090|ref|ZP_04816106.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254195948|ref|ZP_04902374.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|76581138|gb|ABA50613.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|124294241|gb|ABN03510.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] gi|126243612|gb|ABO06705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|169652693|gb|EDS85386.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|242140329|gb|EES26731.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060693|gb|EES42879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] Length = 237 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%) Query: 3 ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 E+ L G + S +E + + F + +P + I N+ Sbjct: 6 EDLLAGLDSARSEEEAFRSVETAAAALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 62 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L H P++ + G A Sbjct: 63 KRRYVEAGFLDVDPILAHGRRSQQPVVLAETLFAS-----AHQMWVEAQSFGLRFGWAQS 117 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174 + G + + + + + + L K + R L Sbjct: 118 SFDAYGGMGMLALVRSREPVTAAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 176 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 177 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|167739431|ref|ZP_02412205.1| LuxR family regulatory protein [Burkholderia pseudomallei 14] gi|167911761|ref|ZP_02498852.1| LuxR family regulatory protein [Burkholderia pseudomallei 112] gi|254191335|ref|ZP_04897839.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|157939007|gb|EDO94677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] Length = 237 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%) Query: 3 ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 E+ L G + S +E + + F + +P + I N+ Sbjct: 6 EDLLAGLDSARSEEEAFRSVETAAAALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 62 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L H P++ + G A Sbjct: 63 KRRYVEAGFLDVDPILAHGRRSQQPVVLAETLFAS-----AHQMWVEAQSFGLRFGWAQS 117 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174 + G + + + + + + L K + R L Sbjct: 118 SFDAYGGMGMLALVRSCEPVTAAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 176 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 177 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|222109223|ref|YP_002551488.1| two-component transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221738497|gb|ACM39362.1| two-component transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 240 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 73/223 (32%), Gaps = 4/223 (1%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 S+ L + I R F Y + + + + L Sbjct: 18 SVDNLFSDFGTV---IAKRGFHSYIYTGLPAVGDDVKHYVVKNAWPPGWTEQFEGLNYFA 74 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D S P W++ +EET + + + GI FP+ + Sbjct: 75 DDPVSRWSLSQSKPFTWKTAREETKATARTKEIQQEADRYRLCDGIVFPMFDPNSWQSVI 134 Query: 133 IFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 ++ LA E I + + L ++ A LT+RE LQ G T Sbjct: 135 SLATDDKGGLAKENIGDLYLLSSYCAMTANNLLRRAEQADHRLTDREKEILQWVSRGKTD 194 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI L ++ +V L L NR Q +++AIR G I Sbjct: 195 WEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIRLGLI 237 >gi|254486014|ref|ZP_05099219.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] gi|214042883|gb|EEB83521.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] Length = 248 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 4/228 (1%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ S + + + R A ++ I + Sbjct: 15 RQADSPGAIWAIVQRYARAHEIRMIAYGSVEVQTYGETTFPGIQF--GMPTAFKESYIKE 72 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + S P W Q+ ++ + + + GIAF V + Sbjct: 73 QLYLDNPLPRLAMSRPDPFYWSDAQDLDDLQPAEIAYLDKLKEAGIWPGIAFQVFGPESR 132 Query: 129 NGYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 N V E L+ + ++E A F L S L+ RE L+ Sbjct: 133 NAAVGMCFEPGAPRLSPDALLELQLASQCAHQRFCALTDGPKSPYARLSPRELEVLRWIA 192 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +A+ +G+S HTV+ KL+ +R +A + I G + Sbjct: 193 QGKSNSVMADIMGISRHTVDTITRRMFEKLEVTDRTRAAVRGISAGLL 240 >gi|218514308|ref|ZP_03511148.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 254 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 75/218 (34%), Gaps = 7/218 (3%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQG--NTVITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L V L FP G V F Sbjct: 85 VLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 AE L LS HTVN YL AT KLD VNR Q A R G Sbjct: 205 AEILVLSEHTVNHYLNRATKKLDTVNRTQ----ARRQG 238 >gi|304397142|ref|ZP_07379021.1| transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304355291|gb|EFM19659.1| transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 240 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 13/225 (5%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +L P L + F + P + I Y D Sbjct: 24 SDLKPLLQQFTESL---GFDYFAFLIQHPVPFSRPRIHLHSTYPKLWVKRYEKQNYYAVD 80 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L ++W R +G + G + Sbjct: 81 PVLSLCQRPGRGLMWTEEMFAGAGN-----LWREAREYGLQSGFSCSAMAPNRALGILSI 135 Query: 135 TSEFLML----ANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGY 189 +S+ + E+ ++ H + + ++RE L+ G+G Sbjct: 136 SSQQPIPLKLCHEELEVKLHLLAELSLDTLERFSDDAMMVLKKEFSQRELEILKWTGEGK 195 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EI+ L +S HTVN + + + + N+ Q A G I Sbjct: 196 TAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240 >gi|85707086|ref|ZP_01038174.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. 217] gi|85668372|gb|EAQ23245.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. 217] Length = 224 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 75/224 (33%), Gaps = 15/224 (6%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L +++R + + A +N Y D D Sbjct: 7 FRQFLDDLRDRFELDHVAYAGMNPISGASHGHM------TYGEDWTAHYLQNKYYEIDPT 60 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L + P+ W ++ + + G+ P+ + G + Sbjct: 61 LLKARHSIAPVDWHRLE---RGAEFQTIFRDARDFGISDRGLTIPIHGPYGDVGGLSINR 117 Query: 137 EFLMLANEVII-----EAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYT 190 + ++I + A + ++ R + +L+ RE LQ G + Sbjct: 118 DCSDREWHLLISEIIGDLQSAAVHMHDMVIQADPLTRMLNSPSLSTREIEILQWTAAGKS 177 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++I + L +S TV +L SA KL+A+ QAI +AI G I Sbjct: 178 QQDIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221 >gi|190894996|ref|YP_001985289.1| transcriptional activator protein [Rhizobium etli CIAT 652] gi|190700657|gb|ACE94739.1| transcriptional activator protein [Rhizobium etli CIAT 652] gi|327193288|gb|EGE60194.1| transcriptional activator protein [Rhizobium etli CNPAF512] Length = 241 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 11/233 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 S +LQ+L L +++ + L+ A + Y + Sbjct: 14 ISASPTLQDLETTLDEVRHIYAISHMVLHVTRFAG---ATDSNPLLMLTYPPEWVKQYRD 70 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + G LP+ W + ++ + + G+ PVR Sbjct: 71 RDYFSIDPVVRLGRRGFLPVEWSASGWDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQG 128 Query: 128 KNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSC 181 + TS + + + + + + L ++ + L+ RE C Sbjct: 129 ERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSGMRKVADLPRLSRRELQC 188 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ +G +++I +L +SV V YL SA KL +A+A+A I Sbjct: 189 LEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALELI 241 >gi|15598673|ref|NP_252167.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|116051496|ref|YP_789670.1| transcriptional regulator RhlR [Pseudomonas aeruginosa UCBPP-PA14] gi|218890275|ref|YP_002439139.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|1710203|sp|P54292|RHLR_PSEAE RecName: Full=Regulatory protein rhlR; AltName: Full=Elastase modulator gi|9949621|gb|AAG06865.1|AE004768_10 transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|151538|gb|AAA25983.1| rhlR [Pseudomonas aeruginosa] gi|452505|gb|AAA62130.1| regulatory protein [Pseudomonas aeruginosa] gi|1117918|gb|AAC44036.1| RhlR [Pseudomonas aeruginosa PAO1] gi|115586717|gb|ABJ12732.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|161724881|emb|CAO85753.1| RhlR protein [Pseudomonas aeruginosa] gi|211908969|gb|ACJ12779.1| rhamnosyl transferase I [actinobacterium MSA10] gi|211908971|gb|ACJ12780.1| rhamnosyl transferase I [actinobacterium MSA19] gi|218770498|emb|CAW26263.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|281331824|emb|CBI71035.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331826|emb|CBI71036.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331828|emb|CBI71037.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331830|emb|CBI71038.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331832|emb|CBI71039.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331834|emb|CBI71040.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331836|emb|CBI71041.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331838|emb|CBI71042.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331840|emb|CBI71043.1| transcriptional regulator [Pseudomonas aeruginosa] gi|299772610|gb|ADJ38517.1| transcriptional regulator RhlR [Pseudomonas sp. BSFD5] Length = 241 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 10/220 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + + +++ ++ F Y P + Y + + Sbjct: 15 RSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQM 74 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + + ++W + ++ G P+R + Sbjct: 75 QNYGAVDPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNN 129 Query: 128 KNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 + + ++ E I +++T L + + L+ RE L Sbjct: 130 LLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREIL 189 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 Q DG +S EIA L +S TVN + + K DA N+ Sbjct: 190 QWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229 >gi|254242162|ref|ZP_04935484.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] gi|126195540|gb|EAZ59603.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] Length = 242 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 10/220 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + + +++ ++ F Y P + Y + + Sbjct: 15 RSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQM 74 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + + ++W + ++ G P+R + Sbjct: 75 QNYGAVDPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNN 129 Query: 128 KNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 + + ++ E I +++T L + + L+ RE L Sbjct: 130 LLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREIL 189 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 Q DG +S EIA L +S TVN + + K DA N+ Sbjct: 190 QWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229 >gi|83747411|ref|ZP_00944450.1| SolR [Ralstonia solanacearum UW551] gi|207744773|ref|YP_002261165.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] gi|83725868|gb|EAP73007.1| SolR [Ralstonia solanacearum UW551] gi|206596183|emb|CAQ63110.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] Length = 236 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 + ++ I + + F + + P + + Y Sbjct: 13 RTAEDERQLFREIASIARQLGFDYCCYGARMPLPVSKPAVAIFDTYPAGWMQHYQANGFL 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + S I+W I G+A G Sbjct: 73 DIDPTVRAGASSGDMIVWP-----VSIRDEAARLWSDARDAGLNVGVARSSWTAHGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185 + L + H T + N LT RE L Sbjct: 128 LTLARHADPLTAAELGRLSIATHWLANLAHTLMSPFLVPKLVPESNAVLTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 188 GEGKTAYEIGQILHISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236 >gi|107103010|ref|ZP_01366928.1| hypothetical protein PaerPA_01004079 [Pseudomonas aeruginosa PACS2] gi|152989609|ref|YP_001347033.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] gi|150964767|gb|ABR86792.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] Length = 224 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 10/214 (4%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + +++ ++ F Y P + Y + + Sbjct: 4 IHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQNYGAV 63 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + ++W + ++ G P+R + + Sbjct: 64 DPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNNLLSVLS 118 Query: 134 FTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDG 188 + ++ E I +++T L + + L+ RE LQ DG Sbjct: 119 VARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADG 178 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +S EIA L +S TVN + + K DA N+ Sbjct: 179 KSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 212 >gi|608485|gb|AAA89073.1| VSMR [Pseudomonas aeruginosa] Length = 241 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 10/218 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + + +++ ++ F Y P + Y + + Sbjct: 17 EMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQN 76 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + ++W + ++ G P+R + Sbjct: 77 YGAVDPAILNGLRSSEMVVWSDRLFD-----QSRMLWNEARDWGLCVGATLPIRAPNNLL 131 Query: 130 GYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQL 184 + + ++ E I +++T L + + L+ RE LQ Sbjct: 132 SVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQW 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 DG +S EIA L +S TVN + + K DA N+ Sbjct: 192 TADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229 >gi|121663597|emb|CAM12356.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 349 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 65/220 (29%), Gaps = 11/220 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ + H + K F + P Q L+ Y Sbjct: 13 NTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNYI 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + IIW R G+A G Sbjct: 73 EIDPTVRDGAASPNMIIWPDADAAEQPS-----LWRDARDFGMSVGVAQSSWAARGVFGL 127 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185 + L I + L + +A+ +LT+RE L Sbjct: 128 LTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKREREVLSWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +G T+ EI E+L +S TV ++ + KL A N++QA+ Sbjct: 188 SEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAV 227 >gi|296388005|ref|ZP_06877480.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAb1] gi|313108838|ref|ZP_07794823.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881325|gb|EFQ39919.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 234 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 10/220 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + + +++ ++ F Y P + Y + + Sbjct: 8 RSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQM 67 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + + ++W + ++ G P+R + Sbjct: 68 QNYGAVDPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNN 122 Query: 128 KNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 + + ++ E I +++T L + + L+ RE L Sbjct: 123 LLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREIL 182 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 Q DG +S EIA L +S TVN + + K DA N+ Sbjct: 183 QWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 222 >gi|92109527|ref|YP_571814.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802609|gb|ABE64982.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 228 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 76/226 (33%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ + E+ L + + + + + D + Sbjct: 2 EQTRTAAEIEDCLLGLAAGFGFTGLFGGIVPTRPAPLAELRSRILFQRFPAQWLDRYSRK 61 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D + H P W E + +L G P+ + Sbjct: 62 GYVFRDPIIQHLFHERAPFTWHEGYESCPQRRNVRLIRGEAAEFGLRDGYVVPISTIDGE 121 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + F + + + + A + L + NLT RE CL AG+G Sbjct: 122 IASLSFGGPGTLPVSADLSVLNFAASYALGRHLHRIATWQRVSSNLTAREWDCLLWAGEG 181 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ E + LG+S TV ++ +A KL AV++ AIA AIR + Sbjct: 182 KTNWETSAILGISRSTVTKHIMAARAKLGAVSKAHAIATAIRTKLL 227 >gi|218460014|ref|ZP_03500105.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 198 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 66/195 (33%), Gaps = 9/195 (4%) Query: 49 QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108 + + I D + + P W+ + + ++ Sbjct: 3 RAAPLAGRWPERWLQIYAAKKYIRIDPMVRYLAHAQRPFRWRESMAAFNGSTHRRRMEQM 62 Query: 109 ---EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF- 164 G G FP+ G + + + L+ I + LEL Sbjct: 63 MVDAFGHGLEDGYLFPIHGRNGILGSLSLGGKPIELSPVEIALLEAVARKTFWRLLELTG 122 Query: 165 -----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + A LT RE L +G TS EI++ L +S HTV+ Y+ KL A Sbjct: 123 EAEALETVLPAETPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAK 182 Query: 220 NRIQAIAKAIRFGYI 234 NR QA+A A R G I Sbjct: 183 NRQQAVALAFRHGLI 197 >gi|254690492|ref|ZP_05153746.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 6 str. 870] Length = 235 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + + Sbjct: 11 QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPYLNGSLKWVRFGAFPDGWEQRYLAQ 67 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + P+IW + + GI+ P Sbjct: 68 NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 123 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235 >gi|34499545|ref|NP_903760.1| LuxR/UhpA family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|327200688|pdb|3QP6|A Chain A, Crystal Structure Of Cvir (Chromobacterium Violaceum 12472) Bound To C6-Hsl gi|34332902|gb|AAQ61750.2| transcriptional activator, LuxR/UhpA family of regulators [Chromobacterium violaceum ATCC 12472] Length = 265 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 5/224 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + EL L I ++ + L ++ +Y D + + Sbjct: 34 IETEGELKAFLDNILSQAPSDRIILVLGRLNNQNQIQRMEKVLNVSYPSDWLNQYSQENF 93 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKN 129 D + + G P+IW + S + + +GI F + Sbjct: 94 AQHDPIMR-IHLGQGPVIW-EERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRNNVG 151 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGD 187 + + ++ + + + + S + L++RE Sbjct: 152 SILSIGGKEPGRNAALVAMLNCLTPHLHQAAVRIANLPPASPSNMPLSQREYDIFHWMSR 211 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G T+ EIA L +S TV ++ + KL+A NR AI + Sbjct: 212 GKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMHL 255 >gi|53725659|ref|YP_102421.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|121600864|ref|YP_993677.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei SAVP1] gi|126442199|ref|YP_001059696.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 668] gi|126451641|ref|YP_001066980.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1106a] gi|134277810|ref|ZP_01764525.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|217421088|ref|ZP_03452593.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200000|ref|ZP_03795550.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237813089|ref|YP_002897540.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238562977|ref|ZP_00439585.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254177786|ref|ZP_04884441.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254184304|ref|ZP_04890894.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254199322|ref|ZP_04905688.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254205635|ref|ZP_04911987.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254261005|ref|ZP_04952059.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254296964|ref|ZP_04964417.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254357791|ref|ZP_04974064.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52429082|gb|AAU49675.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|121229674|gb|ABM52192.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei SAVP1] gi|126221692|gb|ABN85198.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126225283|gb|ABN88823.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134251460|gb|EBA51539.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748918|gb|EDK55992.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147753078|gb|EDK60143.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148026918|gb|EDK84939.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|157806879|gb|EDO84049.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|160698825|gb|EDP88795.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|184214835|gb|EDU11878.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217396500|gb|EEC36517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225928056|gb|EEH24093.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237504732|gb|ACQ97050.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521581|gb|EEP85031.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254219694|gb|EET09078.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 241 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%) Query: 3 ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 E+ L G + S +E + + F + +P + I N+ Sbjct: 10 EDLLAGLDSARSEEEAFRSVETAAAALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 66 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L H P++ + G A Sbjct: 67 KRRYVEAGFLDVDPILAHGRRSQQPVVLAETLFAS-----AHQMWVEAQSFGLRFGWAQS 121 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174 + G + + + + + + L K + R L Sbjct: 122 SFDAYGGMGMLALVRSREPVTAAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 180 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 181 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240 >gi|256368654|ref|YP_003106160.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] gi|255998812|gb|ACU47211.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] Length = 235 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + Sbjct: 11 QSADSADQLFEIIKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 67 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + P+IW + + GI+ P Sbjct: 68 NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 123 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235 >gi|260756046|ref|ZP_05868394.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260676154|gb|EEX62975.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] Length = 238 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + + Sbjct: 14 QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPYLNGSLKWVRFGAFPDGWEQRYLAQ 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + P+IW + + GI+ P Sbjct: 71 NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 126 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238 >gi|259415201|ref|ZP_05739123.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259349111|gb|EEW60865.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 239 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 87/239 (36%), Gaps = 27/239 (11%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + S++L+E+ L +N ++ + ++ + I + D + Sbjct: 14 IESSANLEEIGEVLARFRNLLEVDHVFYRWVDRSGS-------ISGCSTLPVAWQDRYSA 66 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D + + P+ W+ + + + + G + PVR Sbjct: 67 MGYHRIDPVVIGCYTAFHPVDWRDLDWSARL--AAAFRKDSLAFGVGSQGYSVPVRGPAG 124 Query: 128 ------------KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 + FT + + ++I+ AH + + + + + L+ Sbjct: 125 QYAVFSITKTCKGEVWDKFTRKH---SRDLILVAHYVNRRALDFEMSFY---PLPEQPLS 178 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE+ L L +G + AE + +S HT+ Y+ A KL A N A+A+A+ G I Sbjct: 179 MRESEALSLLAEGMSRARAAEAMDISEHTLRVYIEGARSKLQAQNTTHAVARAVTMGLI 237 >gi|149203939|ref|ZP_01880907.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. TM1035] gi|149142381|gb|EDM30426.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. TM1035] Length = 224 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 74/225 (32%), Gaps = 17/225 (7%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L ++NR + + A +N Y D D Sbjct: 7 FRQFLDDLRNRFELDHVAYAGMNPISGQSHGHM------TYGADWTSHYLQHKYYEIDPT 60 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFT 135 L + P+ W + E E + G+ P+ + G + Sbjct: 61 LLKARHSIAPVDWNRL--ERGAEFQTIF--QAARDFGISDRGLTIPIHGPYGDVGGLSIN 116 Query: 136 SEFLMLANEVIIE-----AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGY 189 + +++I A + ++ R +L+ RE LQ G Sbjct: 117 RDCSEREWQLLISGIIGNLQAAAVHMHDMVIQSDPLTRMLNTPSLSTREIEILQWTAAGK 176 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + ++I + L +S TV +L SA KL+A+ QAI +AI G I Sbjct: 177 SQQDIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221 >gi|296156923|ref|ZP_06839760.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295892809|gb|EFG72590.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 234 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 68/231 (29%), Gaps = 13/231 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ E + + + + R + Y + Sbjct: 7 AADEAEWFGAIAGLAETWGFDKLLIAMLPRPT---IRLEDAYVRSTYSPIWRRTYDEQGL 63 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + H + P+IW + +S Q AG+ P+ + G Sbjct: 64 VHIDPTVSHCATRATPLIWS---PDIFTTASQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCLQ 183 + F ++ V+ L L + LT RE CL+ Sbjct: 121 MMCFVNDSNPSDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLK 180 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ L S VN ++ + K +R A A + G I Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231 >gi|53719957|ref|YP_108943.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|52210371|emb|CAH36350.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|156105364|gb|ABU49181.1| BpsR5 [Burkholderia pseudomallei] Length = 241 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%) Query: 3 ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 E+ L G + S +E + + F + +P + I N+ Sbjct: 10 EDLLAGLDSARSEEEAFRSVETAAAALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 66 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L H P++ + G A Sbjct: 67 KRRYVEAGFLDVDPILAHGRRSQQPVVLAETLFAS-----AHQMWVEAQSFGLRFGWAQS 121 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174 + G + + + + + + L K + R L Sbjct: 122 SFDAYGGMGMLALVRSCEPVTAAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 180 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 181 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240 >gi|126724411|ref|ZP_01740254.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126705575|gb|EBA04665.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 238 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 83/231 (35%), Gaps = 15/231 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +S++ + + + + T++ + NY + + Sbjct: 14 QSNTSDNYLTFIDQLCEHMDFDFASYATMSPVTG------SVLGYANYPDEWKMHYMRMN 67 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + P+ W + + ES + R L G+ PVR F Sbjct: 68 LHRVDPTIHQSARSIAPVDWTRL---SRGESFNSVFYRANDFGLTDQGLTVPVRGPFGDV 124 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQ 183 G + T + I E A + ++ R+ +L+ RET LQ Sbjct: 125 GLLSVTRSCSEREWKLLTRDKISELQMAAVHLHDSVMQSDVLSRALRRPSLSARETEVLQ 184 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T ++I + L +S TV ++ SA KL A+ IQA+ +AI + I Sbjct: 185 WTAIGKTQQDIGDILSISHRTVEVHMRSAREKLGALTTIQAVGRAIGYQII 235 >gi|192290718|ref|YP_001991323.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284467|gb|ACF00848.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 3/227 (1%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 +++ + ++ L + I + + Q LH + Sbjct: 16 VERADTPDAVALALLAAVQVHGFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFS 75 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D + S ++P W + + +G + G P+ Sbjct: 76 KGYIFTDPAIRRVTSSMVPFSWTELWDHD--SPAGHRILGEAAEFGLKEGFTVPMVTLDG 133 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + L + L ++ + LT RE L + Sbjct: 134 HSAGLSIAGAMTELPPHLRGPVQMMAIYSFARAAHLRERPPAPV-TLTIREADVLHWIAE 192 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA L +S H V+ K VNR+QA+ +A+R G I Sbjct: 193 GKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGVI 239 >gi|6716341|gb|AAF26601.1|AF110468_3 PsyR [Pseudomonas syringae pv. tabaci] Length = 246 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 16/230 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ E ++ +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREA--ECCSGRRTDDFLKRSAKYQLSSGATFTLHDASWLFAALS 136 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I A L+ RET L+ Sbjct: 137 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 196 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE +S TV ++ + + KL QA+ KAI G + Sbjct: 197 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMGMV 246 >gi|218663810|ref|ZP_03519740.1| hypothetical protein RetlI_33506 [Rhizobium etli IE4771] Length = 253 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 64/236 (27%), Gaps = 13/236 (5%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL------ICELHNYDLD 60 ++ +L L A NF + + R + NY + Sbjct: 21 QADSAAQPDQLFDLLAAF-----ALNFDIPWVAYGPLAADRWAFKRVKYDPQVVLNYPDE 75 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + + W + + + +GI Sbjct: 76 WQKRCSEMAYDRVGPVVKESRKQRRAFQWSEVYNDVYTTEGERRIFDEAAAFGLRSGITV 135 Query: 121 PVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERE 178 P+ F N I A + + L+ RE Sbjct: 136 PLHGPDGSFAITSFAQHSSGQFQNRAISYLQLAALHFHSRVGKFADSNCIDEGAVLSGRE 195 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 C+ G +S +I LG+S +TV+ ++ + KLD +R A A G I Sbjct: 196 RECIAWVARGKSSSDIGTILGISKNTVDFHIKNVMRKLDTASRTVAAITAATLGII 251 >gi|91779483|ref|YP_554691.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692143|gb|ABE35341.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 234 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 13/231 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ E + + + + R + Y + Sbjct: 7 AADEAEWFGTIAGLVETWGFEKLLIAMLPRPT---IRLEDAYVRSTYSPIWRRTYDEQGL 63 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + H + P+IW + + Q AG+ P+ + G Sbjct: 64 VHIDPTVSHCATRATPLIWS---PDIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120 Query: 131 YVIFTS-EFLMLANEVIIEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQ 183 + F + I ++ D L + LT RE CL+ Sbjct: 121 MMCFVNDSNPNDEFWQHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLK 180 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ L S VN ++ + K +R A A + G I Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231 >gi|208401188|gb|ACI26687.1| RhlR transcriptional regulator [Pseudomonas aeruginosa] gi|209171245|gb|ACI42868.1| RhlR [Pseudomonas aeruginosa] Length = 241 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 10/219 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + + +++ ++ F Y P + Y + + Sbjct: 15 RSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQM 74 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + + ++W + ++ G P+R + Sbjct: 75 QNYGAVDPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNN 129 Query: 128 KNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 + + ++ E I +++T L + + L+ RE L Sbjct: 130 LLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREIL 189 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 Q DG +S EIA L +S TVN + + K DA N+ Sbjct: 190 QWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNK 228 >gi|99078080|ref|YP_611338.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99035218|gb|ABF62076.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 239 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 82/233 (35%), Gaps = 15/233 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + S++L+E+ L +N + + + ++ + + D + Sbjct: 14 IESSANLEEIGEVLAQFRNLVDLDHVSYRWVDRSGS-------VSGCSTLPTAWQDRYSA 66 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D + + P+ W+ + + S+ + + G + PVR Sbjct: 67 MSYHRIDPVVIGCYTAFHPVDWRDLDWSARLASAYR--KDSIAFGVGNQGYSVPVRGPAG 124 Query: 128 KNGYVIFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSS-AARNLTERETSC 181 + + T + + + V LE + L+ RE+ Sbjct: 125 QYAILSITKSCEGEVWDKFTQKHSRDLILLAHYVNRRALEFEVSYYPTPEQPLSMRESEA 184 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G + AE + +S HT+ Y+ A KL A N A+A+A+ G I Sbjct: 185 LSLLAEGMSRARAAEAMAISEHTLRVYIEGARSKLQAQNTTHAVARAVTMGLI 237 >gi|213418834|ref|ZP_03351900.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 192 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 10/197 (5%) Query: 43 DFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG 102 P + I Y D L N + W + Sbjct: 1 PVPFTRPKISLRTTYPQAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EA 55 Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVIT 158 Q G+ V L G++ F+ L ++ EV + + ++ Sbjct: 56 QAMWDAAQRFGLRRGVTQCVMLPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLS 115 Query: 159 DFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + ++RE L+ +G TS EIA L +S +TVN + + K + Sbjct: 116 ALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFN 175 Query: 218 AVNRIQAIAKAIRFGYI 234 A N+ Q A G I Sbjct: 176 APNKTQIACYAAATGLI 192 >gi|23501101|ref|NP_697228.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62289164|ref|YP_220957.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82699104|ref|YP_413678.1| transcriptional regulator LuxR family protein [Brucella melitensis biovar Abortus 2308] gi|163842459|ref|YP_001626863.1| transcriptional activator protein solR [Brucella suis ATCC 23445] gi|254694980|ref|ZP_05156808.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 3 str. Tulya] gi|254696612|ref|ZP_05158440.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700994|ref|ZP_05162822.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 5 str. 513] gi|254705366|ref|ZP_05167194.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 3 str. 686] gi|254707120|ref|ZP_05168948.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M163/99/10] gi|254709336|ref|ZP_05171147.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis B2/94] gi|254713241|ref|ZP_05175052.1| Transcriptional activator, LUXR family protein [Brucella ceti M644/93/1] gi|254716405|ref|ZP_05178216.1| Transcriptional activator, LUXR family protein [Brucella ceti M13/05/1] gi|254731525|ref|ZP_05190103.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 4 str. 292] gi|256030859|ref|ZP_05444473.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M292/94/1] gi|256045980|ref|ZP_05448852.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060329|ref|ZP_05450502.1| Transcriptional activator, LUXR family protein [Brucella neotomae 5K33] gi|256112692|ref|ZP_05453613.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 3 str. Ether] gi|256158890|ref|ZP_05456740.1| Transcriptional activator, LUXR family protein [Brucella ceti M490/95/1] gi|256254264|ref|ZP_05459800.1| Transcriptional activator, LUXR family protein [Brucella ceti B1/94] gi|256258748|ref|ZP_05464284.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 9 str. C68] gi|260169762|ref|ZP_05756573.1| Transcriptional activator, LUXR family protein [Brucella sp. F5/99] gi|23346971|gb|AAN29143.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella suis 1330] gi|62195296|gb|AAX73596.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella abortus bv. 1 str. 9-941] gi|82615205|emb|CAJ10146.1| Bacterial regulatory protein, LuxR family:Autoinducer binding domain [Brucella melitensis biovar Abortus 2308] gi|163673182|gb|ABY37293.1| Transcriptional activator protein solR [Brucella suis ATCC 23445] Length = 235 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + Sbjct: 11 QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 67 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + P+IW + + GI+ P Sbjct: 68 NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 123 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235 >gi|300716150|ref|YP_003740953.1| regulatory protein [Erwinia billingiae Eb661] gi|299061986|emb|CAX59102.1| Regulatory protein [Erwinia billingiae Eb661] Length = 240 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 10/227 (4%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 ++ ++S LI+ + A F Y + P + I +Y Sbjct: 19 NVSDISEITALIEQQTLALGFDFYALYIRHPVPFTRPKIFIYSSYPKKWVSAYQKGNFAA 78 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + + ++W + GQ +G + G + Sbjct: 79 IDPVIENCQVPGKIVLWDE-----PLSRRGQKVFDAAKEYGIHSGFSACAMAKNRSIGIL 133 Query: 133 IFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGD 187 S E +ML E ++ ++ ++ S L++RE L+ + Sbjct: 134 SMASGKTFEKIMLTPEKQLKLQYLSVLIMEALQQVKDISMSVMNMELSQRELEILKWTAE 193 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI+ L +S +TVN + + +A N+ Q + A G + Sbjct: 194 GKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQVASYAAAIGLL 240 >gi|17988041|ref|NP_540675.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|161618178|ref|YP_001592065.1| transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189023440|ref|YP_001934208.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225626726|ref|ZP_03784765.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237814657|ref|ZP_04593655.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260546462|ref|ZP_05822202.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260563261|ref|ZP_05833747.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260567174|ref|ZP_05837644.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260759270|ref|ZP_05871618.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260760992|ref|ZP_05873335.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260885067|ref|ZP_05896681.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261215322|ref|ZP_05929603.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261218189|ref|ZP_05932470.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261221416|ref|ZP_05935697.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|261314598|ref|ZP_05953795.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316846|ref|ZP_05956043.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261320963|ref|ZP_05960160.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261324304|ref|ZP_05963501.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261751515|ref|ZP_05995224.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261756080|ref|ZP_05999789.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|261759304|ref|ZP_06003013.1| transcriptional activator [Brucella sp. F5/99] gi|265987917|ref|ZP_06100474.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265992391|ref|ZP_06104948.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994134|ref|ZP_06106691.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265997378|ref|ZP_06109935.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|297247581|ref|ZP_06931299.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|17983788|gb|AAL52939.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] gi|161334989|gb|ABX61294.1| Transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189019012|gb|ACD71734.1| Transcriptional activator, LUXR family [Brucella abortus S19] gi|225618383|gb|EEH15426.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237789494|gb|EEP63704.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260096569|gb|EEW80445.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260153277|gb|EEW88369.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260156692|gb|EEW91772.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260669588|gb|EEX56528.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260671424|gb|EEX58245.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260874595|gb|EEX81664.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260916929|gb|EEX83790.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260920000|gb|EEX86653.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|260923278|gb|EEX89846.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261293653|gb|EEX97149.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261296069|gb|EEX99565.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261300284|gb|EEY03781.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261303624|gb|EEY07121.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261739288|gb|EEY27284.1| transcriptional activator [Brucella sp. F5/99] gi|261741268|gb|EEY29194.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261745833|gb|EEY33759.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|262551846|gb|EEZ07836.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|262765115|gb|EEZ11036.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263003457|gb|EEZ15750.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|264660114|gb|EEZ30375.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|297174750|gb|EFH34097.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 238 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + Sbjct: 14 QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + P+IW + + GI+ P Sbjct: 71 NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 126 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238 >gi|7385146|gb|AAF61717.1|AF232768_2 acylhomoserine lactone dependent transcriptional activator [Pseudomonas fluorescens] Length = 242 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 61/216 (28%), Gaps = 15/216 (6%) Query: 28 IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI 87 ++ ++A + + + NY D + H P Sbjct: 33 LQGASYAYFAAPRNREVA-----PLIVSNYPARWLKAYKNANYHLIDPIIHHGLKSCAPF 87 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 W + E S +L R G F + + + E + Sbjct: 88 SWSDALQAAPCERSRELFRRS-SQYRICTGATFTLHDAGGMFSSLSLCNSGPQAEFERRM 146 Query: 148 E-----AHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A + L L L+ RE L+ G EIA Sbjct: 147 ADQQGHLQMALIRFHGRLLSLRAMDELFPEPQTGPLSARELGVLKWVMMGKAYREIAVIC 206 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV ++ + + KL N QA+ +A R G + Sbjct: 207 AISERTVKFHMSNISGKLQVCNAKQAVYEAQRQGIL 242 >gi|330973884|gb|EGH73950.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 247 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 19/230 (8%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 +++ LH I + +A ++ L NY Sbjct: 28 IEDFENDLHRIGDFT----YAYFSSPKTRTV-----KPVILSNYPDSWLKSYIASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARHAIQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQL 184 + + I + + + L+ RE L+ Sbjct: 138 LCNARQQTDFDQRIRDKAADIQMSLIRFHDRLTRTQAPHELFPQPTRCKLSSREIGVLKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIAE +S TV ++ + + KL+ QA+ KAI G + Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247 >gi|270261276|ref|ZP_06189549.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044760|gb|EFA17851.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 238 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 12/214 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ + L ++ +A F Y+ +P + + NY + + L Sbjct: 14 DSVHDRELFLRRLEPCAQALGFEYYSYIVFSCYPASRPKMLIEGNYPAEYLEDYRKLRVY 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + L W + E L R+ G + ++ + + G Sbjct: 74 LQDPVIDQAHHSTLQFHWDEEFYQDRPE----LWWRMAQ-FGIREGWSQSIKDCYGRLGI 128 Query: 132 VIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA--RNLTERETSCLQL 184 + F + + + + E + A LT RE L+ Sbjct: 129 LTFAGKKIPEQSPEAGARNETFFLWLAQIAHKTLREALISVNDEAIKDVLTLREKDILRW 188 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +G TSEEIA +GLS TVN ++G++ KL Sbjct: 189 CSEGKTSEEIAMLMGLSERTVNFHIGNSIKKLSV 222 >gi|254718404|ref|ZP_05180215.1| Transcriptional activator, LUXR family protein [Brucella sp. 83/13] gi|306840172|ref|ZP_07472955.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|306844457|ref|ZP_07477047.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306275270|gb|EFM57020.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306404737|gb|EFM61033.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] Length = 235 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + Sbjct: 11 QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 67 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + P+IW + + GI+ P Sbjct: 68 NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 123 FGLLSFVRTGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235 >gi|1730567|sp|P54303|PHZR_PSECL RecName: Full=Transcriptional activator protein phzR gi|496217|gb|AAA21841.1| positive regulatory protein [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 71/226 (31%), Gaps = 13/226 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + ++ F + P + NY D D Sbjct: 22 DMQEFTAVALRALRELRFDFFRYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H PI+ + + G+A P + G + Sbjct: 82 TVKHSKVSSSPILASNELFRGCPD-----LWSEANDSNLRHGLAQPSFNTQGRVGVLSLA 136 Query: 136 SEFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSCLQLAGDG 188 + ++ + EA + LE + + + RE L+ DG Sbjct: 137 RKDNPISLQE-FEALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADG 195 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEI +G+ TVN + + K+ A NR+QA A+ GYI Sbjct: 196 KTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQASRYAVAMGYI 241 >gi|91976651|ref|YP_569310.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91683107|gb|ABE39409.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 3/227 (1%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 +++ + ++ L + I + + Q LH + Sbjct: 16 VERADTPDAVALALLAAVQVHGFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFS 75 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D + S ++P W + + +G + G P+ Sbjct: 76 KGYIFTDPAIRRVTSSMVPFSWTELWDHD--SPAGHRILGEAAEFGLKEGFTVPMVTLDG 133 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + L + L ++ + LT RE L + Sbjct: 134 HSAGLSIAGAITELPPHLRGPVQMMAIYSFARAAHLRERPPAPV-TLTIREADVLHWIAE 192 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA L +S H V+ K VNR+QA+ +A+R G I Sbjct: 193 GKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGVI 239 >gi|225851721|ref|YP_002731954.1| transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|265999658|ref|ZP_06111771.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] gi|225640086|gb|ACN99999.1| Transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|263095176|gb|EEZ18845.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] Length = 238 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + Sbjct: 14 QSADSADQLFGIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + P+IW + + GI+ P Sbjct: 71 NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 126 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238 >gi|265983368|ref|ZP_06096103.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] gi|264661960|gb|EEZ32221.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] Length = 238 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + Sbjct: 14 QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + P+IW + + GI+ P Sbjct: 71 NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 126 FGLLSFVRTGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238 >gi|238026711|ref|YP_002910942.1| acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] gi|237875905|gb|ACR28238.1| Acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] Length = 241 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 64/206 (31%), Gaps = 11/206 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 FA I+ +L C L +Y + D + H + P W Sbjct: 36 FAYVMIDK-----NSLELGCFLSSYPIRLQQEYRRRALHRVDPVVLHAIQSVAPFSWAEA 90 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE---- 148 + + + L G F V + G + F + IE Sbjct: 91 FRQQRVPDPSEFDA-LRREFGLHDGYVFTVHDPYQYVGMLSFFNRGGRPEFRAEIERVKG 149 Query: 149 -AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + +LT RE + L+ A G + EIA+ G+ TV Sbjct: 150 AMQLALVLFHSRINAKPPDSRHRVESLTLRERTVLKWAAMGKSYSEIADICGIRERTVKY 209 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KLD QA+ A R G Sbjct: 210 HMANVVQKLDVSTAKQAVIVASRLGL 235 >gi|83594724|ref|YP_428476.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577638|gb|ABC24189.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 260 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 72/237 (30%), Gaps = 13/237 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + + + L+ F + +L LHNY + Sbjct: 14 EALNGTSDSADLTTLLTGTFARLGFPHSCYHVVRLEGAGARLPYVLHNYKDSWSEHYFRE 73 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L LP +W + + G + P+R + Sbjct: 74 GFLEIDPVLATCPDRQLPFLWSEAIAPESLSHDQRRMFSDARDAGLHDGYSVPIRGSHGE 133 Query: 129 NGYVIFTSEFLMLANEVII-----EAHGACYQVITDFL------ELFKKRSSAARNLTER 177 V E A +I H L +R L+ R Sbjct: 134 FATVTVIPEQGGDAARRLIGEQKHLVHLLALYFDRHARSTVINARLSSRRRKTV--LSPR 191 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ A G TS EIAE G+S +V +L +A KL ++ A+ KA+ G + Sbjct: 192 EQEMLRWAALGKTSWEIAEIAGISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLGLV 248 >gi|66044867|ref|YP_234708.1| LuxR transcriptional regulator [Pseudomonas syringae pv. syringae B728a] gi|33413265|emb|CAD97431.1| AHL regulator [Pseudomonas syringae pv. syringae] gi|63255574|gb|AAY36670.1| regulatory protein, LuxR:Autoinducer-binding [Pseudomonas syringae pv. syringae B728a] Length = 247 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 19/230 (8%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 +++ LH I + +A ++ L NY Sbjct: 28 IEDFENDLHRIGDFT----YAYFSSPKTRTV-----KPVILSNYPDSWLKSYIASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARHAIQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQL 184 + + I + + + + L+ RE L+ Sbjct: 138 LCNARQQTDFDQRIRDKAADIQMSLIRFHDRLTKTQAPHELFPQPTRCKLSSREIGVLKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIAE +S TV ++ + + KL+ QA+ KAI G + Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247 >gi|50956580|gb|AAT90827.1| acylhomoserine lactone dependent transcriptional activator [uncultured proteobacterium QS1] Length = 223 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 14/227 (6%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 EL+P L + + N++ Y + + + + NY D + D Sbjct: 3 ELAPSLENALSCLGEFNYSYYVVRKS-----KNTKPIIVSNYPDDWLMLYEARSYHLYDP 57 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + P W Q + +L + +G F + + Sbjct: 58 VINYGMRRFAPFSWCDAQASDTADIGKELF-QSAEKYQISSGFTFVLHDAAELFASLSVC 116 Query: 136 SEFLMLANEVI-----IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGD 187 E A L + + A L+ RE LQ G Sbjct: 117 RSGRGSDFGQRVADHSAEIQMALINFHDHILSTQTVDELFPLPANLLSAREIEILQWVGK 176 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G E+A +S HTV ++ + KL+ +N QA+ +AIR G I Sbjct: 177 GKAYFEVAIICAISEHTVKFHISKISTKLNVLNAKQAVYEAIRRGII 223 >gi|261855565|ref|YP_003262848.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836034|gb|ACX95801.1| transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 237 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 13/234 (5%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + S + I++ A F L+ Q + ++NY + Sbjct: 9 VSQIQSAENEESAFKKIEDEALALGFENAAYGLRLNLNITNQKVVMMNNYSQNWKRRYTD 68 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + H N L+P++W I + G + Sbjct: 69 ENYISIDPVVKHGNKSLMPVVWS----SNKITENKNF-WEDAYSHNLKYGWSQASADQVG 123 Query: 128 KNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETS 180 + G + T ++ + E + +++ + KK LT RE Sbjct: 124 RRGLLTLTRGHEPISELELKELQYRLTWLTQISHHCMSEIIT-TKKMPETMITLTMREKD 182 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G TS E + + ++ TVN ++ ++ KL+ +N+ A +A G + Sbjct: 183 VLRWTAAGKTSGETSTIMNITERTVNFHIANSMQKLNCINKTSATVRAAMLGLL 236 >gi|299529754|ref|ZP_07043189.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] gi|298722272|gb|EFI63194.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] Length = 239 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 9/231 (3%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L + + SL + + + + F L++ +SA D +++ ++ + Sbjct: 14 LAIEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARD-DAVERIYWIEGDWFGTGAPVD 72 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRL 124 H P W + G+ + P G+ PV Sbjct: 73 AE-TYVRHCPVTRHILETNQPFFWT-----KTNGAQGERYSVVRAPQGPGIHGLQVPVFG 126 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQ 183 G + E + + + + L + L++RE L Sbjct: 127 LLGLEGAMSLGGERIDASPQARLALELIAQTAFRTARRLLELPAQEELGPLSDREREVLA 186 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIA LGLS TV +L +L QAI AIR G I Sbjct: 187 WTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRMAIRNGEI 237 >gi|182375406|emb|CAQ15951.1| vR protein [Pseudomonas fuscovaginae] Length = 239 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 10/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 + + ++ ++ + + + N+ D+ + + D Sbjct: 15 DARTWFQSLVLSVQKLGYSQVLYALKPNKEAQNSTARIMSNFPDAWRDLYDNENYSSIDP 74 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H S LPI+W+ + + G+ P+ + G + + Sbjct: 75 VVSHSFSSSLPILWEDKLYK---TRREKEFAEDARRAGLSHGLTLPIHGPQGQVGMLSLS 131 Query: 136 ------SEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDG 188 +E+L + I A +T LF SS A +LT RE L A Sbjct: 132 CAPMPQNEYLQVLQHSIAAASMLRDYAVTSGSSLFLHNSSSTAPHLTPRELEILHWAWAE 191 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+ EI + L L+ TV + + KL+ +R A+A+AI+ Sbjct: 192 KTTWEIGKILSLAEPTVEFHFKNIRRKLNVSSRRLAVARAIQLDL 236 >gi|171320496|ref|ZP_02909525.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171094259|gb|EDT39337.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 234 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 9/215 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + A T FP + I + N + + D Sbjct: 25 LTHAASALGLEYATYAMRRPFPICNRQIVMVSNCPVRWRERYIDAQFINIDPVFKAAIGS 84 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P++W + +S G + R G + + + Sbjct: 85 DEPVVWSA-----QHGASRSRFWDEALSFGIAHGWSSVSRGADGTLGILTLSRSSDPIEP 139 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLG 199 I + + A LT+RET L+ DG T+ EI+ L Sbjct: 140 AEKILNQSTVHWLAHAAHLAMAPFLPAGDEFDPTLTQRETDVLKWTADGKTAYEISLILS 199 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN ++ + KL N++ A+AKA G + Sbjct: 200 ISESTVNFHVKNIVAKLGTANKVHAVAKAALMGML 234 >gi|260777849|ref|ZP_05886742.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] gi|260605862|gb|EEX32147.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] Length = 240 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + S++ + L + + + + + + + D + + N+ D + L Sbjct: 12 QTIDSIESMGRLLEQLNHIVNSE---YFVLGVSFDPHIKNGRFIVVDNFPADCREDSCNL 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 Y D S +P +W ++ I S S L GI+ P+ + Sbjct: 69 GLMYVDPICKFGASNCMPSVW-ESSKQIDIHSQELFS--LSHIQGIEQGISIPIHGLNGE 125 Query: 129 NGYVIFTSEFL---MLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 G + F + + +V++ A ++ + L + LT RE CL Sbjct: 126 VGMLSFATSDVIAYPTHTDVLLFAQLIVPLIVQNLSRLSHASQTEHSQAMLTNREIQCLT 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG ++ EIA+ + + TV +L +A KL A NR QA+ +A+ G+I Sbjct: 186 WAADGKSASEIADIVDCTERTVKFHLSNACKKLGATNRCQAVTRALLGGHI 236 >gi|209518837|ref|ZP_03267650.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209500722|gb|EEA00765.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 269 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 13/231 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +++ E + + + + Y + Sbjct: 42 AANEAEWFGVITGLSETWGFDRILVAMLPRPTMRLE---DAYLRSTYAPAWRQAYDEQGM 98 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + H S P+IW E + Q AG+ P+ + G Sbjct: 99 VHFDPTVAHCLSRSGPLIWT---PEIFATPAQQSLYEEARSYGLGAGVTLPIHGPNQEAG 155 Query: 131 YVIFTSEFLMLA-NEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQ 183 + F ++ + A ++ D + L + LT RE CL+ Sbjct: 156 MMCFVNDDKPSDGFRRHVNAALPNLVLLRDLVIDTSRQHLNSHAQTLLPKLTPRERECLK 215 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI+ L S VN ++ + K +R A A + G I Sbjct: 216 WTARGKSTWEISHILSCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 266 >gi|86361169|ref|YP_473056.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86285271|gb|ABC94329.1| transcriptional regulator (activator) protein, LuxR family [Rhizobium etli CFN 42] Length = 241 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 83/233 (35%), Gaps = 11/233 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 S +LQ+L L +++ + L+ + + L+ Y + Sbjct: 14 ISASPTLQDLETALDEVRHIYAISHMVLH-VTRSSGATVSNPLLML--TYPPEWVKQYRD 70 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + G LP+ W + + ++ + + G+ PVR Sbjct: 71 RDYFSIDPVVRLGRRGFLPVEWSASKWDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQG 128 Query: 128 KNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFK-KRSSAARNLTERETSC 181 + TS + + + + + L + + +L+ RE C Sbjct: 129 ERSLFTVTSNHPDAYWRQFRMDCMRDLQFLAHHLHDRAMVLAGMREIADVAHLSRRELQC 188 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ G+ +++I+ +L +S+ V YL SA KL +A+AKA I Sbjct: 189 LEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALELI 241 >gi|66047443|ref|YP_237284.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63258150|gb|AAY39246.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 254 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S+L + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 D + D + + P +W + T I + VR Sbjct: 65 ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYLPRAETVLKTFITDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + ++ +A + + E + LF + Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKI 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ Sbjct: 185 RSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|193890916|gb|ACF28617.1| quorum sensing regulator [Mesorhizobium tianshanense] Length = 275 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 74/242 (30%), Gaps = 12/242 (4%) Query: 1 MSENTLTGKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNY 57 MS T ++ L + + L I R + A LD +Q Y Sbjct: 34 MSGLDATLEEIGQLGDAEKIPALLQRIAERYGLKTVAYLG-TGTLDRRVPRQEPFIAVTY 92 Query: 58 DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 + + D + LLPI W + L G Sbjct: 93 PPEWVERYRARGYINIDPAIQIGLRRLLPIDWDEFGKAEGDLRQ--FFGEASEFGLGLRG 150 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAAR 172 I+FPV T++F + L + Sbjct: 151 ISFPVHGCGGDRALFSVTADFSKREWHWARRTAFRHFPIIAAHLHEAVLRTD-GVFRSQP 209 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE CL+ +G T E LGLS HTV YL SA KL A + A + A + G Sbjct: 210 RLSPRELECLRWTSEGKTVWECGVILGLSPHTVRCYLESARHKLGASSNTHAASLATKSG 269 Query: 233 YI 234 + Sbjct: 270 LL 271 >gi|206562058|ref|YP_002232821.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038098|emb|CAR54046.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 237 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 10/209 (4%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F P + + + N+ + D + S P++W Sbjct: 33 LGFRYCVYGLRRTLPLARPDMQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWN 92 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 + E G + G + + L + I Sbjct: 93 AFD-----EPGDTAFWHDAACFGMRYGWSHGGYDRAGNLGVLTLVRDTTPLDADEISRLR 147 Query: 151 G----ACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + L + LT RE L DG T+ EI G++ TV Sbjct: 148 APCASLSHAAHAYLMPRLADPIAPVGTGLTLREREVLAWTADGKTAYEIGMIFGIAERTV 207 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +A VKLDA+N+ A KA G + Sbjct: 208 KFHLQNAVVKLDAMNKTHAATKAAMLGLL 236 >gi|85376480|gb|ABC70477.1| acylhomoserine lactone-dependent transcriptional regulator [Pseudomonas sp. M18] Length = 215 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 10/208 (4%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 +++ ++ F Y P + Y + + D + + Sbjct: 1 VFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQNYGAVDPAILN 60 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 ++W + ++ G P+R + + + Sbjct: 61 GLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNNLLSVLSVARDQQ 115 Query: 140 MLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEI 194 ++ E I +++T L + + L+ RE LQ DG +S EI Sbjct: 116 NISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADGKSSGEI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRI 222 A L +S TVN + + K DA N+ Sbjct: 176 AIILSISESTVNFHHKNIQKKFDAPNKT 203 >gi|90420983|ref|ZP_01228887.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] gi|90334761|gb|EAS48537.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] Length = 294 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 57/219 (26%), Positives = 85/219 (38%), Gaps = 2/219 (0%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 L+ L + + A+ ++ S D +L L N+ G L Sbjct: 77 ALTQLLGDVATDFGFSHAAVLSVPSTDDGGTATRL--LLSNWSESFGQAYEQLGLHRSKL 134 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + +P +W E + R+ AG FPV NG + F Sbjct: 135 VVGALKTDPMPFVWDIDTLYGADEPDPSPAARMLMEAEYLAGAFFPVHGLTAFNGALSFA 194 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 L E I E H + + + + L+ RE CL+LA G TS EI Sbjct: 195 GRSCALPAEAIRELHLFAFALFGMLAAARFEENRRNNPLSVRERDCLKLAMLGKTSSEIG 254 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS +T++ YL +A KLDA NR A+A A + GY+ Sbjct: 255 IILSLSEYTISQYLTAAQRKLDASNRTHAVALAAQLGYL 293 >gi|316933442|ref|YP_004108424.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601156|gb|ADU43691.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 239 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 4/224 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + ++ L + S Q + + + Sbjct: 19 APTSEAVADILLASVRSFGFTKVVAGVVPSPQVSAEEQLSNVLMSRWPAAWSRRYSSKGY 78 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + S + W + + + + + + G P+ + Sbjct: 79 LTEDPTIQRVRSSIEAFEWSEL---SAVSIAARNIMEEAADFGLNHGFTVPLHTLDGEYA 135 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + L + K+ +A+ LT RE L +G T Sbjct: 136 ALSIAGDRCELPASFRGVVQLMATYAFAKAI-GQKRAINASPRLTIREADVLHWIAEGKT 194 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI++ LG+S H V+ K AVNR+Q I+ A+R G I Sbjct: 195 DWEISQILGVSEHLVDKVARQLKDKFGAVNRVQMISCAMRLGVI 238 >gi|270341116|emb|CAQ15948.2| vR protein [Pseudomonas fuscovaginae] Length = 239 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 73/226 (32%), Gaps = 10/226 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 + + + ++ + + + N+ D + + D Sbjct: 15 DARTWFESLVFSARKLGYSKVLYALKPNKEAQNNAAEIMSNFPDDWRRRYDNENYSIIDP 74 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF- 134 +FH S LPI W+ +T + G+ P+ + G + Sbjct: 75 TVFHSFSSSLPIPWEDKLYKTQ---KEKEFAEEARWAGLSHGMTLPIHGPQGQVGMLSLS 131 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQLAGDG 188 + ++ ++ D+ + A +LT RE L A Sbjct: 132 CDPMSEPEYQKTLKNSLGAATLLRDYAVTSSFNHFQQGSGYTAPHLTPRELEILHWAWAE 191 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EI + L LS TV + + KL +R A+A+AI+ I Sbjct: 192 KTTWEIGKILSLSEPTVEFHFKNIRRKLKVTSRRLAVARAIQLDLI 237 >gi|299065227|emb|CBJ36393.1| Transcriptional activator protein solR [Ralstonia solanacearum CMR15] Length = 236 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 75/229 (32%), Gaps = 13/229 (5%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 + Q+ I + ++ F + P + + Y Sbjct: 14 TAQDERQLFRQIASVVRQLGFDYCCYGIRVPLPVSKPAVAIFDTYPAGWMAHYQASGFLE 73 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + S I+W I G+A G + Sbjct: 74 VDPTVRAGASSSDLIVWP-----VSIRDEAARLWSDARDFGLNVGVARSSWTAHGAFGLL 128 Query: 133 IFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 L+ + + +++ FL + K ++ LT RE L Sbjct: 129 TLARGADPLSAAELEQLSATTNWLANLAHALMSPFL-MPKLVPESSAALTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 188 GEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236 >gi|107027317|ref|YP_624828.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691286|ref|YP_836819.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736675|ref|YP_001777935.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105896691|gb|ABF79855.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116649286|gb|ABK09926.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169818863|gb|ACA93445.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 237 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 10/209 (4%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F P + + + N+ + D + S P++W Sbjct: 33 LGFRYCVYGLRRTLPLARPDLQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWN 92 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 + E G + G + + L + I Sbjct: 93 AFD-----EPGDTAFWHDAACFGMRYGWSHGGYDRAGNLGVLTLVRDTTPLDADEISRLR 147 Query: 151 G----ACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + L + LT RE L DG T+ EI G++ TV Sbjct: 148 APCASLAHAAHAYLMPRLADPIAPVGTGLTLREREVLAWTADGKTAYEIGMIFGIAERTV 207 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +A VKLDA+N+ A KA G + Sbjct: 208 KFHLQNAVVKLDAMNKTHAATKAAMLGLL 236 >gi|104781941|ref|YP_608439.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110928|emb|CAK15646.1| putative transcriptional regulator, luxR family [Pseudomonas entomophila L48] Length = 235 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 75/230 (32%), Gaps = 9/230 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 +++++L + + + + F L++ N+A D +++ ++ D + Sbjct: 12 QIEQATTLALIQSAVRSVARPLGYDRFVLFSANAARD-EVVERIHWVEGDWFGDGLRVD- 69 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL-PFAGIAFPVRLG 125 H + P W + G+ + + G+ PV Sbjct: 70 AQTYIRHCPVNRHLLTAREPFFWSKRE-----GEGGERYHVVRAPVGTGVHGLQVPVFGP 124 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184 G + + + + L + L+ERE L Sbjct: 125 AGLEGAMSLGGLHIDASPATRMCLALLANAAFHAARRLLEAPVGQEVGVLSERERQVLAW 184 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +IA LGLSV TV +L +A +L QAI A+ G + Sbjct: 185 TAAGQRQADIAATLGLSVRTVENHLRAARRRLGVATTAQAIRIALGSGVL 234 >gi|77463693|ref|YP_353197.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462526|ref|YP_001043640.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221639538|ref|YP_002525800.1| Autoinducer-binding domain-containing protein [Rhodobacter sphaeroides KD131] gi|332558550|ref|ZP_08412872.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] gi|2360976|gb|AAC46021.1| autoinducer sythesis regulator [Rhodobacter sphaeroides] gi|77388111|gb|ABA79296.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] gi|126104190|gb|ABN76868.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221160319|gb|ACM01299.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides KD131] gi|332276262|gb|EGJ21577.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] Length = 233 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 77/230 (33%), Gaps = 12/230 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S+ + + L I + F + + + NY Sbjct: 7 STVATDDASFLDYIDQLCQKLGFDYASYATTSPMTGA---VQGYANYPDSWKMHYMRRNL 63 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + + P+ W + E + E + G+ PVR + G Sbjct: 64 HRVDPTIHKSALSIAPVDWSRFE---RDERFRAVFFAAEDFGITPQGLTVPVRGPYGDRG 120 Query: 131 YVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQL 184 + T E VI E A + + R+ L+ RE LQ Sbjct: 121 LLSVTRNCARPEWEKHKRAVIGELQVAAVHLHDAVMRSDVISRALRQPRLSTREIEVLQW 180 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G + +I + LG+S TV +L SA KL ++ +QA+ +AI G + Sbjct: 181 AAAGKSQTDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGLV 230 >gi|264678731|ref|YP_003278638.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] gi|262209244|gb|ACY33342.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] Length = 239 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 9/231 (3%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L + + SL + + + + F L++ +SA D +++ ++ + Sbjct: 14 LAIEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARD-DAVERIYWIEGDWFGTGAPVD 72 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRL 124 H P W + G+ + P G+ PV Sbjct: 73 AE-TYVRHCPVTRHILETNQPFFWT-----KTNGAQGERYSVVRAPQGPGIHGLQVPVFG 126 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQ 183 G + E + + + + L + L++RE L Sbjct: 127 LLGLEGAMSLGGERIDASPQARLALELIAQIAFRTARRLLELPAQEELGPLSDREREVLA 186 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIA LGLS TV +L +L QAI AIR G I Sbjct: 187 WTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRVAIRNGEI 237 >gi|17548004|ref|NP_521406.1| transcriptional activator SOLR transcription regulator protein [Ralstonia solanacearum GMI1000] gi|20140008|sp|P58590|SOLR1_RALSO RecName: Full=Transcriptional activator protein solR gi|17430310|emb|CAD17075.1| transcriptional activator solr. transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 236 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 13/229 (5%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 + Q+ I + ++ F + P + + Y + Sbjct: 14 TAQDERQLFRQIASVVRQLGFDYCCYGIRVPLPVSKPAVAIFDTYPAGWMEHYQASGFLE 73 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + S IIW I G+A G + Sbjct: 74 IDPTVRTGASSSDLIIWP-----VSIRDEAARLWSDARDFGLNIGVARSSWTAHGAFGLL 128 Query: 133 IFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 L + + +++ FL + K ++ LT RE L Sbjct: 129 TLARRADPLTAAELEQLSATTNWLANLAHALMSPFL-MPKLVPESSAALTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 188 GEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236 >gi|254249338|ref|ZP_04942658.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gi|124875839|gb|EAY65829.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] Length = 288 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 10/209 (4%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F P + + + N+ + D + S P++W Sbjct: 84 LGFRYCVYGLRRTLPLARPDLQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWN 143 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 + E G + G + + L + I Sbjct: 144 AFD-----EPGDTAFWHDAACFGMRYGWSHGGYDRAGNLGVLTLVRDTTPLDADEISRLR 198 Query: 151 G----ACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + L + LT RE L DG T+ EI G++ TV Sbjct: 199 APCASLAHAAHAYLMPRLADPIAPVGTGLTLREREVLAWTADGKTAYEIGMIFGIAERTV 258 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +A VKLDA+N+ A KA G + Sbjct: 259 KFHLQNAVVKLDAMNKTHAATKAAMLGLL 287 >gi|167615994|ref|ZP_02384629.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] Length = 194 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 60/198 (30%), Gaps = 9/198 (4%) Query: 41 ALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES 100 FP I + NY + D + P+ W + + Sbjct: 2 RRPFPISNPQILMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSASTNASKSA- 60 Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQV 156 G + R G + + + H Sbjct: 61 ----FWAEALSFGIAHGWSSASRGADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVA 116 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +LT RET L+ DG T+ EIA L +S TVN ++ + KL Sbjct: 117 HASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKL 176 Query: 217 DAVNRIQAIAKAIRFGYI 234 + N+IQA+AKA G + Sbjct: 177 GSTNKIQAVAKAALMGML 194 >gi|152061176|dbj|BAF73632.1| putative transcription factor PsyR [Pseudomonas syringae pv. tabaci] Length = 232 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 15/223 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R L NY Sbjct: 16 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 70 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 71 DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 129 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I L+ RET L+ Sbjct: 130 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPTQCKLSTRETGVLKW 189 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G + EIAE +S TV ++ + + KL+ QA+ K Sbjct: 190 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYK 232 >gi|327200684|pdb|3QP5|A Chain A, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200685|pdb|3QP5|B Chain B, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200686|pdb|3QP5|C Chain C, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200687|pdb|3QP5|D Chain D, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|288973234|gb|ADC79709.1| CviR transcriptional regulator [Chromobacterium violaceum] Length = 265 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 5/224 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + EL L + ++ + L ++ +Y D D Sbjct: 34 IETENELKAFLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPSDWLDQYMKENY 93 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D L + G P++W+ + + + +GI F + G Sbjct: 94 AQHDPILR-IHLGQGPVMWEERFNRAK-GAEEKRFIAEATQNGMGSGITFSAASERNNIG 151 Query: 131 -YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGD 187 + ++ + + + + S + L++RE Sbjct: 152 SILSIAGREPGRNAALVAMLNCLTPHLHQAAIRVANLPPASPSNMPLSQREYDIFHWMSR 211 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G T+ EIA L +S TV ++ + KL+A NR AI + Sbjct: 212 GKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMHL 255 >gi|166798333|gb|ABY89695.1| transcriptional regulator [Mesorhizobium loti] Length = 241 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 13/230 (5%) Query: 4 NTLTGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 TL + S S+ + L FA ++ + NY Sbjct: 6 ETLLEQLSLSVDEVDFHNALANAAGAFDIPAFAYLSL-----VSDGVTKPRLISNYHSGW 60 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D + P W I Q G+ P Sbjct: 61 TSHYLRHQYERIDPVIERARCSECPFQWGRGFGHAGISKREQQLFDEAAEFGICCGLTIP 120 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLT 175 + + F ++ L + I E + +++ + +R + +LT Sbjct: 121 LVDRRGGVAAMTFAADRLDPSFMRIAEQYEQALEIMATCFHIGVRRKLSGGLAVDGVSLT 180 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE CL+ G ++ EI LG+ T +L +A KL + QA+ Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230 >gi|330969598|gb|EGH69664.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 254 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S+L + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 D + D + + P +W T I + VR Sbjct: 65 ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLKTFITDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + ++ +A + + E + LF + Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKI 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ Sbjct: 185 RSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|300702552|ref|YP_003744152.1| transcriptional activator protein solr [Ralstonia solanacearum CFBP2957] gi|299070213|emb|CBJ41504.1| Transcriptional activator protein solR [Ralstonia solanacearum CFBP2957] Length = 236 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 69/229 (30%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 + ++ + + + F + + P + + Y Sbjct: 13 RTAEDEHQLFREVASIARQLGFDYCCYGARMPLPVSKPAVAIFDTYPAGWMQHYQANGFL 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + S I+W + G+A G Sbjct: 73 DIDPTVRAGASSSDLIVWPVSIRDDAA-----RLWSDARDAGLNIGVARSSWTAHGAFGL 127 Query: 132 VIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185 + L + I H T + N LT RE L Sbjct: 128 LTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 188 GEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236 >gi|163758447|ref|ZP_02165535.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284736|gb|EDQ35019.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 245 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 72/219 (32%), Gaps = 2/219 (0%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPNILIETYGDDF 76 L L++ + + + I S D R + + D + Sbjct: 26 FDLLRLLREVTQFHQYTYFFIASGCDGATRSLADSIIITSAPSDLVRRYDETGLMERSPL 85 Query: 77 LFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + P+ + PV H V F Sbjct: 86 MRALGGRGTPLQCRLDETITAFTTEQQAALDDFSAEFNIDCCFITPVYHRDHGPAAVCFL 145 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + ++ + + S A LTERE CL G TS EIA Sbjct: 146 GKRNQMSFSEAANLAMISSLAHQKLRRVSAQPSKADSPLTERERECLVWTSSGKTSVEIA 205 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS HTVN YL +A KLDAVNR QA+A AIR G+I Sbjct: 206 RILSLSEHTVNHYLNNAARKLDAVNRTQAVALAIRQGFI 244 >gi|9297032|sp|O30919|SOLR2_RALSO RecName: Full=Transcriptional activator protein solR gi|2444467|gb|AAC45947.1| SolR [Ralstonia solanacearum] Length = 236 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 71/232 (30%), Gaps = 14/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + +L + I ++ F + + P + + Y Sbjct: 13 RTAEDEHQLFREIAAIARQL---GFDYCCYGARMPLPVSKPAVAIFDTYPAGWMQHYQAS 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + S I+W + G+A Sbjct: 70 GFLDIDPTVRAGASSSDLIVWPVSIRDDAA-----RLWSDARDAGLNIGVARSSWTAHGA 124 Query: 129 NGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 G + L + I H T + N LT RE L Sbjct: 125 FGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTTREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 185 CWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236 >gi|328542134|ref|YP_004302243.1| LuxR family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326411884|gb|ADZ68947.1| LuxR family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 217 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 69/218 (31%), Gaps = 10/218 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + R +A + A P + L + D D + Sbjct: 1 MLAELGFREWAY-QVIRAEALPDEKP--VILTTFSDAWRDHYIDSSYHLIDPVILKGPER 57 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 LLP W S+ + G+ PV + + +E Sbjct: 58 LLPFTWSSMSFGIEPTDEQKSFFAEAEEFGLGEGLGIPVHGAYGSLAMISMVAEEETRRL 117 Query: 144 EVII-----EAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 ++ + H EL + + +L+ RE CL +G T EI+ Sbjct: 118 ARMLHHHGEDVHLISLIFHNLARELMALGRCGRSPISLSPRERECLIWLANGKTRWEISL 177 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV + + K +R + I +A+R G I Sbjct: 178 ILGISEETVKYHFKNIRAKFGTYSRHEIIIQAVRLGLI 215 >gi|152989200|ref|YP_001349253.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7] gi|150964358|gb|ABR86383.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7] Length = 239 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 75/246 (30%), Gaps = 23/246 (9%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L ++SS E S L + + + + + + NY Sbjct: 3 LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + D + H +LPI W + G+ Sbjct: 60 WREHYDKAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168 P+ + G + + + E EA+ V+ L F+ Sbjct: 117 PLHGARGELGALSLS-----VEAESRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPV 171 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE LQ G TS EI+ S VN ++G+ K +R A A Sbjct: 172 NKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231 Query: 229 IRFGYI 234 + G I Sbjct: 232 VNLGLI 237 >gi|90423713|ref|YP_532083.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105727|gb|ABD87764.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 240 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 82/234 (35%), Gaps = 11/234 (4%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T +++S+ +L+ L +N + + + Q L YD Sbjct: 9 TIDRANSVDDLARTLVDWRNESGVAHLVYHATHVPGC---EQPNPVLLLTYDDAWVKRYV 65 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + +LPI W S++ T E + G P+R Sbjct: 66 EQDYFGIDPVVVAGRDAVLPIDWMSVEHATPQARQ--FFAEAESYGVGRHGFTLPIRGPA 123 Query: 127 HKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSS-AARNLTERETS 180 + T+ + + H + + + L R A R L+ RE Sbjct: 124 AERALFTITTNATDDHWHRWRFSYLKDFHLLAHYLHDRAMRLAGLRLDHAMRPLSRREQQ 183 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CLQ G T +IA L LS V+ YL +A KL+ QAIAKA+R + Sbjct: 184 CLQGLVHGRTPGQIAGDLELSASAVHGYLRTARRKLNCATHEQAIAKAVRLELL 237 >gi|144900206|emb|CAM77070.1| transcriptional activator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 237 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 66/238 (27%), Gaps = 14/238 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 M+E L + SS Q+ L + FA L+ P Y + Sbjct: 8 MTEELLWVEDISSAQD---SLRRLAKLANVDFFAYGNSRPGLENPYWDA------TYPTE 58 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-ESSGQLSVRLEGGLLPFAGIA 119 + + D + LP W+ + +L G Sbjct: 59 WMEHYFANRYQFIDPVVLEAQRSHLPFAWRFLLNRPGAMSPEQKLLFAEAAKYGIRDGFT 118 Query: 120 FPVRLGFHKNGYVIFT---SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 P + F + + T L + L+ Sbjct: 119 IPFHSDNGCIAAMSFAFRSRAEMEHFANMQPRLKLLALYYHTAIERLLEVEIP-DDELSA 177 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E CL DG + EI+ L V + L SA KL A QA+ KAI G I Sbjct: 178 MERQCLTFLADGRSLWEISGLLHRPESDVTSSLRSARDKLGAATTAQAVHKAIAEGLI 235 >gi|59940055|gb|AAX12566.1| LuxR-type transcriptional regulator [Aeromonas sp. 'CDC 2478-85'] Length = 260 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 7/230 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + +++ + + Sbjct: 14 TSVTDGDRLAELISRFTLGMGYDYYRFAVIILMSMQRRKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LP+ W +E ++ + + L GI+FP+ G Sbjct: 74 ACDPIIQLARKQTLPLYWNRREERGRFLQEGSRDVMGLAAEFGLRNGISFPLHRAAGGKG 133 Query: 131 YVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + F + + L+ ++ ++ ++ + + + LT RET CL L Sbjct: 134 IMSFIISERASRDLLLESSPLLSWMSNYIFEAAIRIVRVSLREDDPQEALTARETECLFL 193 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G TS EIA LG++ VN +L T K ++NR QAI K + G + Sbjct: 194 ATEGKTSGEIACILGITERPVNYHLNQVTRKTGSMNRCQAIIKGVSSGIL 243 >gi|59714108|ref|YP_206883.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] gi|462557|sp|P35327|LUXS_VIBF1 RecName: Full=Transcriptional activator protein luxR gi|295436|gb|AAA27542.1| putative [Vibrio fischeri ES114] gi|59482356|gb|AAW87995.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] Length = 250 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 11/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +++ L I I + Y + + + NY + D Sbjct: 24 DINQCLSEIAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDP 80 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + S PI W + E+ I+ ++ G +FP+ + G + F Sbjct: 81 VVDYSKSHHSPINWN-VFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFA 139 Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + + H ++ ++ ++ R + LT+RE CL A +G Sbjct: 140 HSDKDIYTDSLF-LHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGK 198 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +I++ LG S TV +L + +KL+ NR Q+I+KAI G I Sbjct: 199 STWDISKILGCSERTVTFHLTNTQMKLNTTNRCQSISKAILTGAI 243 >gi|260461687|ref|ZP_05809933.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785241|ref|YP_004144717.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032328|gb|EEW33593.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171129|gb|ADV14667.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 241 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 72/226 (31%), Gaps = 10/226 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S + + + A +F L+ S + + NY L Sbjct: 10 EQLSESVDAVDLCETMASAAAALDFPLFAYFSCPS--ASGRKPRLISNYPPSWTSRYMQL 67 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + G W + ++ Q + G+ + + Sbjct: 68 RYHRHDPVILRGLQGWDTFDWGVDLARQHLPAAQQRILEEAARFGIRCGLTMSMHDHRGR 127 Query: 129 NGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + S+ E ++ + + L + LT RE C Sbjct: 128 FAALTLASDQSRPPLLRSLSRYEQALQLVAISFHIFAR-RRLAEDCVVDGVILTPREFEC 186 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ A DG ++ +I++ L +S TV +L +A KL QA+A+ Sbjct: 187 LKWAADGKSAWDISQILSVSKRTVTFHLENAKAKLGVRTINQAVAR 232 >gi|49082134|gb|AAT50467.1| PA1430 [synthetic construct] Length = 240 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 75/246 (30%), Gaps = 23/246 (9%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L ++SS E S L + + + + + + NY Sbjct: 3 LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + D + H +LPI W + G+ Sbjct: 60 WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168 P+ + G + + + E EA+ V+ L F+ Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPV 171 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE LQ G TS EI+ S VN ++G+ K +R A A Sbjct: 172 SKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231 Query: 229 IRFGYI 234 + G I Sbjct: 232 VNLGLI 237 >gi|330992245|ref|ZP_08316193.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter sp. SXCC-1] gi|329760444|gb|EGG76940.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter sp. SXCC-1] Length = 244 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 72/225 (32%), Gaps = 5/225 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + Y++ + Q+ Y Sbjct: 22 IRGAPDHQALAEAFGALVSRLGPHAYSMGTIHKTDPLQRH-LIATTYPDHWMAHYVARNY 80 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + GL P W+ I E +R G + +G A P+ L Sbjct: 81 HHIDPVIDPLRHGLHPYDWKDIHIEN---RRQDTMLREFGEMGFRSGHAVPLALAPGTLL 137 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGY 189 V S + + A Q + +L +K + LT RE CL G Sbjct: 138 LVSIASYDPHIDTRQQMAIQLAASQFHYRYHQLGRKHAGITGTGLTRRERECLTWVAQGK 197 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +I L LS +T+ +L +A KL NR+QA KA G I Sbjct: 198 DTADIGHILALSDNTIKFHLKNALRKLGCHNRVQAAVKATCLGLI 242 >gi|15596627|ref|NP_250121.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAO1] gi|116049375|ref|YP_791822.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14] gi|218892698|ref|YP_002441567.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58] gi|254234529|ref|ZP_04927852.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719] gi|254239780|ref|ZP_04933102.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192] gi|313106426|ref|ZP_07792658.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016] gi|125980|sp|P25084|LASR_PSEAE RecName: Full=Transcriptional activator protein lasR gi|9947379|gb|AAG04819.1|AE004572_7 transcriptional regulator LasR [Pseudomonas aeruginosa PAO1] gi|151326|gb|AAA25874.1| transcriptional activator LasR [Pseudomonas aeruginosa PAO1] gi|115584596|gb|ABJ10611.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14] gi|126166460|gb|EAZ51971.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719] gi|126193158|gb|EAZ57221.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192] gi|156106986|gb|ABU49653.1| LasR [Pseudomonas sp. M18] gi|218772926|emb|CAW28738.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58] gi|310879160|gb|EFQ37754.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016] Length = 239 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 75/246 (30%), Gaps = 23/246 (9%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L ++SS E S L + + + + + + NY Sbjct: 3 LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + D + H +LPI W + G+ Sbjct: 60 WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168 P+ + G + + + E EA+ V+ L F+ Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPV 171 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE LQ G TS EI+ S VN ++G+ K +R A A Sbjct: 172 SKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231 Query: 229 IRFGYI 234 + G I Sbjct: 232 VNLGLI 237 >gi|308186328|ref|YP_003930459.1| Transcriptional activator protein phzR [Pantoea vagans C9-1] gi|308056838|gb|ADO09010.1| Transcriptional activator protein phzR [Pantoea vagans C9-1] Length = 240 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 10/216 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 +Q ++ F + P + I Y D L Sbjct: 30 LQQFTESLGFDYFAFLIQHPVPFTRPRIHLHSTYPKLWVKRYEKQNYYAVDPVLTLCQRP 89 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM--- 140 + W Q +G + G + +S+ + Sbjct: 90 GRGMAWSEEQFTDAGN-----LWHEAREYGLQSGFSCSAMAPNRVIGILSISSQQPISVQ 144 Query: 141 -LANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198 E+ ++ H + + ++RE L+ +G T+ EI+ L Sbjct: 145 LRHAELEVKLHLLAELSLDTLERFSDDAMMVLKKAFSQRELEILKWTAEGKTAVEISLIL 204 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S HTVN + + + + N+ Q A G I Sbjct: 205 SISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240 >gi|89053644|ref|YP_509095.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88863193|gb|ABD54070.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 243 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 73/236 (30%), Gaps = 5/236 (2%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 M+ ++ + ++ + + + + + + + + Sbjct: 1 MTSVDAIMEQIRTAPSRRALWQIMLDFMHDEGVVMGSYHFVDADAASVR--VAADGFPEE 58 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D P W IQ+ + + G+AF Sbjct: 59 WICEYLNRKLALIDPIPALAARMSRPFYWHEIQDLIPPSAQTDAYLDRLRASGLGDGLAF 118 Query: 121 PVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 V +N YV F + L E I EL ++ L+ RE Sbjct: 119 YVFGPGLRNAYVGLGFGRPVVDLPPEQIFRLQCVAQAGHLRVCELS-DQAPKEAALSPRE 177 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ IAE L +S HTV+A++ S KLD +R A + + G + Sbjct: 178 KQVLDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVL 233 >gi|209809708|ref|YP_002265247.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|208011271|emb|CAQ81712.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 247 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 6/211 (2%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 +Q K + Y + + I L NY L + + D + + S Sbjct: 29 LQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYYDEANLIKDDPIVDYSFSH 88 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 PI W +++ + + + ++G +FP+ G + F S Sbjct: 89 HSPINWSIFEKQKKMSNQIN-VIEEAKISGLYSGFSFPIHTKDGGFGMISFASSQKEKYI 147 Query: 144 EVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + +++ + K+ LT+RE CL + +G + EI++ L Sbjct: 148 DNLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKECLIWSCEGKSRWEISKIL 207 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 G S TV +L ++ +KL A NR Q+I+KAI Sbjct: 208 GCSERTVTFHLANSQLKLGANNRCQSISKAI 238 >gi|119116629|dbj|BAF40892.1| LuxR [Shewanella hanedai] Length = 243 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 12/217 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + Y + + L NY N D + + S Sbjct: 24 LTKLALLLDCEYYLFAILNPVSIFKSDLYILDNYPSCWKKYYNDEKLIDYDPIIDYSASN 83 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 PIIW +++ ++ + +G +FPV + G + F + Sbjct: 84 YAPIIWSMLEQSKWDKNKTN-VIEEAKNSNLKSGFSFPVHTKNNSFGVISFANSNNEKT- 141 Query: 144 EVIIEAH--------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 +I H +++ + K + LT RE CL +G T+ EI+ Sbjct: 142 --LISLHSNSYSYVLLVLPELLDSHQRINKNIGNTCTQLTPREKECLAWISEGKTTWEIS 199 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + L S TV+ ++ + KL NR Q+I+K+I G Sbjct: 200 KILDCSERTVSFHITNLQTKLGTNNRSQSISKSILTG 236 >gi|21311443|gb|AAM46724.1|AF452135_9 LuxR2 [Aliivibrio salmonicida] Length = 223 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 6/211 (2%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 +Q K + Y + + I L NY L + + D + + S Sbjct: 5 LQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYYDEANLIKDDPIVDYSFSH 64 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 PI W +++ + + + ++G +FP+ G + F S Sbjct: 65 HSPINWSIFEKQKKMSNQIN-VIEEAKISGLYSGFSFPIHTKDGGFGMISFASSQKEKYI 123 Query: 144 EVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + +++ + K+ LT+RE CL + +G + EI++ L Sbjct: 124 DNLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKECLIWSCEGKSRWEISKIL 183 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 G S TV +L ++ +KL A NR Q+I+KAI Sbjct: 184 GCSERTVTFHLANSQLKLGANNRCQSISKAI 214 >gi|541657|dbj|BAA06489.1| LasR [Pseudomonas aeruginosa] Length = 239 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 75/246 (30%), Gaps = 23/246 (9%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L ++SS E S L + + + + + + NY Sbjct: 3 LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + D + H +LPI W + G+ Sbjct: 60 WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168 P+ + G + + + E EA+ V+ L F+ Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPV 171 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE LQ G TS EI+ S VN ++G+ K +R A A Sbjct: 172 SKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231 Query: 229 IRFGYI 234 + G I Sbjct: 232 VNLGLI 237 >gi|148560233|ref|YP_001258220.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148371490|gb|ABQ61469.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella ovis ATCC 25840] Length = 235 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + Sbjct: 11 QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 67 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + P+IW + + GI+ P Sbjct: 68 NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 123 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN+++A+AKA FG + Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVKAVAKARTFGLL 235 >gi|330952863|gb|EGH53123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 254 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 90/248 (36%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S+L + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 D + D + + P +W T I + VR Sbjct: 65 ADWYALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLKTFITDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNG---YVIFTSEFLMLA--NEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + + L + + E + LF + Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCADGSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKI 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ Sbjct: 185 RSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|197344641|gb|ACH69671.1| LuxR family transcriptional regulator [uncultured proteobacterium] Length = 277 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 11/227 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ + ++ R Q +A F + S +D + + LH+Y + + + L Sbjct: 15 RAGAPVDVLAR--DFQRCTEALGFRHFACCSHVDPLKPPRRAVMLHSYPKEWAQLFSELE 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D H + L+P W + + Q G G P+ Sbjct: 73 LFDIDPVFLHASRSLVPFFWDTEAFNDELSPPQQELFNEAGRYGLTRGYTVPIH--SVDA 130 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCL 182 S ++ +E + A Q++ +L K + L+ RE CL Sbjct: 131 PRDFRASCSVVPDSESLEPAAYQAVQLMAFYLYDTASKDAQQKDPPPVQQPLSRRERQCL 190 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LA G + + LGLS TV+ ++ +A +L R+QA+ A+ Sbjct: 191 ELAAQGKSDWVSSRILGLSERTVHNHVENAKRRLQVATRMQAVMHAL 237 >gi|260433332|ref|ZP_05787303.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417160|gb|EEX10419.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 230 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 14/217 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 I + F + + + + NY + + D L+ Sbjct: 15 INSVCNELGFDYASYATTHPV---KGDVQGYANYPDEWKLHYGSQGYHHLDPTLYQAALS 71 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSEFLMLA 142 + P+ W + + R G+ PVR + + G + T + Sbjct: 72 IAPVDWSRFNHDEKFNA----VFRDAHDFGITDRGLTVPVRGPYGECGMLSVTKDCSDTE 127 Query: 143 N-----EVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 V+ + A Q ++ ++ +L+ RE LQ +G + ++I + Sbjct: 128 WKKLKRHVMGDLQMAAVQAHDTVMQSGVLAKALYLPSLSRREREILQWVAEGKSQQDIGD 187 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S TV +L S KL A+ QAI +AI G Sbjct: 188 ILSISHRTVEVHLRSGREKLGALTTAQAIGRAIGLGL 224 >gi|254511024|ref|ZP_05123091.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] gi|221534735|gb|EEE37723.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 15/222 (6%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + ++ + + A +N A I Y D + D L Sbjct: 18 EFLRQVCDKYEMDHAAYAGMNPAAG------TIHGHVTYGDDWKNHYQEQGLHLIDPTLH 71 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + P+ W ++ + ++ +P GI PVR + G + T Sbjct: 72 MSQRSIAPVDWSRLE---RGKDFQRVFRDAHDFGIPDQGITIPVRGPYGDIGLLSATRGC 128 Query: 139 LMLANEVII-----EAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSE 192 + ++ + + + + R L+ RE LQ A G + + Sbjct: 129 SRDEWKKLVPNVIKDLQSLAVHIHDNVMTSDTISRMLYHPTLSSRELEILQWAAAGKSQQ 188 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +I + L +S TV +L S+ KL+A+ QA+ +AI G I Sbjct: 189 DIGDILSISHRTVEVHLRSSREKLNALTTPQAVGRAIGIGLI 230 >gi|320325287|gb|EFW81354.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. B076] Length = 189 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 57/190 (30%), Gaps = 10/190 (5%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY D + H + P W+ + + R Sbjct: 1 MSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQ 59 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE---------AHGACYQVITDFLELF 164 +G F + + + + I ++I Sbjct: 60 LSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHE 119 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L+ RET L+ G + EIAE +S TV ++ + + KL+ QA Sbjct: 120 LFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQA 179 Query: 225 IAKAIRFGYI 234 + KAI G + Sbjct: 180 VYKAINIGMV 189 >gi|255608035|ref|XP_002538833.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] gi|223510221|gb|EEF23550.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] Length = 234 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 73/227 (32%), Gaps = 5/227 (2%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +++ + RI A + + L + + ++ D ++ Sbjct: 10 EACATIDAVKALFK---RRIAAHGYTASACGAFLPADKGPEPHFFFQDWPPDWLELYVNR 66 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + P W+ + E + + Q G++ P+ Sbjct: 67 NFVAADYGVAEARRRIAPFTWREAKAERTLSRAEQDIWDTVVEWGWTDGLSVPIHGPGGY 126 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAG 186 V + + + + + L + LT RE CL+ Sbjct: 127 FAIVTMAGKEQPMPPALRGKLQQLAFLTHERCRALTGLAPVTDPQATLTHRELECLRWVA 186 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G T +IA LG+S T ++ A KL A R QA+A+ + G Sbjct: 187 AGKTDLQIARLLGVSQTTARTHIDQARRKLGARTRSQAVARLVLSGL 233 >gi|26991331|ref|NP_746756.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24986392|gb|AAN70220.1|AE016661_6 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 279 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 13/223 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L + + +N + + + NY + + D Sbjct: 65 LFDIAVHLAQDLD---MDYLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPA 121 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 +S +P++W + + + G + H + Sbjct: 122 ANLSHSSTMPVLWTDELYKEAPQ-----FREMACLYGLRHGWTQSLHDQQHNESQISVAR 176 Query: 137 EFLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTS 191 + + + C+ + E ++ERE L+ + G T+ Sbjct: 177 PNGPIDEVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPKMSERELEVLKWSAAGKTA 236 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++A L LS TVN ++ S K +A N+ AIA A G+I Sbjct: 237 ADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 279 >gi|327190710|gb|EGE57792.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 240 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 68/223 (30%), Gaps = 4/223 (1%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 + E+ + + + F + T+ + I + N+ + D + Sbjct: 19 THYEVFKFMKGLTQDLGMTAFLIMTLPTVDFVEIGATKI--ITNWPAEMVDYYDAHNLMV 76 Query: 73 GDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + P + E + L G FPV G Sbjct: 77 DSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGRGA 136 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + E+ + +L T E CL+L G S Sbjct: 137 MSISGSRNFTMLEMAKIL-FIATLIYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGGRKS 195 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ L LS + VN ++GS KL R QA+ A+R I Sbjct: 196 SEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|56697147|ref|YP_167510.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56678884|gb|AAV95550.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 15/222 (6%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L ++ +++ + A +N A I Y + D L Sbjct: 18 DFLLQVREKLEMDHAAYAGLNPAAGA------IHGYVTYSDEWKLHYQEQGFHMIDPTLH 71 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + P+ W ++ ++ + G+ PVR + G + T E Sbjct: 72 MSQRSIAPVDWSRLE---RSNDFRRVFRDAHDFGIGDQGLTIPVRGPYGDVGLLSVTREC 128 Query: 139 LMLANEVII-----EAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSE 192 + ++ + + + R +L+ RE LQ G + + Sbjct: 129 STEEWQKLVRHVIGDLQSLAVHIHDTVMSSDMLGRILYHPSLSTREVEILQWVAAGKSQQ 188 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +I + L +S TV +L S+ KL A+ QA+ +A+ G I Sbjct: 189 DIGDILSISHRTVEVHLRSSREKLCALTTAQAVGRAVGLGLI 230 >gi|28558836|ref|NP_788096.1| putative transcriptional regulator [Ruegeria sp. PR1b] gi|22726387|gb|AAN05182.1| RC109 [Ruegeria sp. PR1b] Length = 258 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 80/249 (32%), Gaps = 18/249 (7%) Query: 1 MSENTLTGKKSS-SLQELSPRLHLIQNRIK--ARNF-ALYTINSALDFPRRQQLIC---- 52 M N ++ + S ++ E R ++ A + P+ + Sbjct: 8 MKCNNVSASRISCAISEKFSRFSSLKEVSDFLASGLGDYGISDVTYYTPKSKVKGGGAGR 67 Query: 53 ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 + Y D D + D + PI W +++ Sbjct: 68 LITTYSQDWQDHYFEMSYQDKDPVIEMGQQSFCPIDWSILKDRCGDTKK---MFGEAREF 124 Query: 113 LPFA-GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKK 166 G+ P+R + + TS+ + AH + + L L Sbjct: 125 GVSDRGVVIPMRGHLGEITLISMTSDLGGSEWVKYLSAHKSEFVNFAFCLHGSILSLSAN 184 Query: 167 RSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE LQ A G TS E A L LS T+ Y+G A KL+A + A+ Sbjct: 185 TGGKEEPRLTVREKQVLQWAAFGKTSWETAMILELSERTIETYIGKAVAKLEASTKAHAV 244 Query: 226 AKAIRFGYI 234 KA+ G I Sbjct: 245 CKALSLGLI 253 >gi|146277748|ref|YP_001167907.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555989|gb|ABP70602.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 233 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 72/227 (31%), Gaps = 12/227 (5%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + L + F + + + NY Sbjct: 10 ASDDANFLEYLDQLCARLGFDFASYATTSPMTGA---VQGYANYPDSWKMHYMRRNLHRV 66 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + P+ W + E + E + G+ PVR + G + Sbjct: 67 DPTIHKSALSIAPVDWARFE---RDERFRAVFFAAEDFGITPQGLTVPVRGPYGDRGLLS 123 Query: 134 FTSEFLMLANE-----VIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGD 187 T + I + A + + R+ L+ RE LQ Sbjct: 124 VTRRCPRSDWDKLKRAAIGDLQVAAVHLHDAVMRSDVISRALRQPRLSTREIEVLQWVAA 183 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +I + LG+S TV +L SA KL ++ +QA+ +AI G + Sbjct: 184 GKSQMDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGLV 230 >gi|71736210|ref|YP_276356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482085|ref|ZP_05636126.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71556763|gb|AAZ35974.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322567|gb|EFW78660.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330180|gb|EFW86166.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875327|gb|EGH09476.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330987492|gb|EGH85595.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011444|gb|EGH91500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 254 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S++ + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTVDQQMDCALLLASELGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113 D + D + + P +W +T I + VR Sbjct: 65 ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + S+ A + + E + LF + Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDAALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|300689864|ref|YP_003750859.1| transcriptional activator protein solR [Ralstonia solanacearum PSI07] gi|299076924|emb|CBJ49537.1| Transcriptional activator protein solR [Ralstonia solanacearum PSI07] Length = 236 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 68/229 (29%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 + Q+ I + + F + P + + Y Sbjct: 13 RTAQDERQLFREITSIARQLGFDYCCYGVRMPLPVSKPAVAIFDTYPAGWMQHYQASGFL 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + S IIW I G+A G Sbjct: 73 EIDPTVRAGASSSDLIIWP-----VSIRDEAMRLWSDARDFGLNIGVARSSWTARGAFGL 127 Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLE-LFKKRSSAARN-LTERETSCLQLA 185 + L + + T L K + LT RE L Sbjct: 128 LTLARHADPLTAAELDRLSATTNWLANLAHTLMSPFLMPKLVPESNAVLTAREREVLCWT 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 188 GEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIVIGLI 236 >gi|83952460|ref|ZP_00961191.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius nubinhibens ISM] gi|83836133|gb|EAP75431.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius nubinhibens ISM] Length = 251 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 24/238 (10%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 + L L + ++ +K L+ ++ D + H Sbjct: 20 AGLSSLPATVEALRRALKVDQI-LFCSSTGPDRSQN------WHTLPPGWTARYAQQGYH 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + P W+ + + + + + G P + Sbjct: 73 RIDPVRAEAQRRVTPFDWRPLDWQRPAARALR--ADAVAHGIGPQGFTIPAHGPNGQLAL 130 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLEL---------------FKKRSSAARNLTE 176 + T++ + A+ + L + A L+ Sbjct: 131 LSITADRDDATWTDLTRANRFALILAAHALHHKIMSQPDAGLGEDPDSAAATPPAPRLSP 190 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET + L G + +IA KL +S HT+ +Y+ +A KL AVN A+A+AI G I Sbjct: 191 RETDVITLLARGDSRGQIATKLAISEHTLRSYIETARHKLGAVNTPHAVARAIAMGMI 248 >gi|222150233|ref|YP_002551190.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221737215|gb|ACM38178.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 64/211 (30%), Gaps = 9/211 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS- 91 F Y + + + + + + D + + P W Sbjct: 35 FDYYGLVRSPKPDQNPMSLVLAGRWPEKWPQVYITKKFVLIDPAIRYLAQAQRPFRWSET 94 Query: 92 --IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 + Q + G FP+ + + L I+ Sbjct: 95 LTAFSQDPHFKRMQRMMMDAQRFGLEEGYIFPIHGRGGLLANMTIGGRPVELTPIEIMLF 154 Query: 150 HGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E+ + + LT RE L G+G TS E+++ L +S H Sbjct: 155 DTVAKCAFWRLAEINGEDELLSMVQKVDVRLTRRELEILNYLGEGMTSNEMSKLLEISNH 214 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV+ Y+ KL+A NR +A A R G I Sbjct: 215 TVDWYVNELQDKLNAKNRQHMVAIAYRLGLI 245 >gi|104783716|ref|YP_610214.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112703|emb|CAK17431.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 234 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 18/233 (7%) Query: 15 QELSPRLHL---------IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 +++ L +A ++ L + + +NY + + Sbjct: 7 EDIQQLLEERNPQRMFEIAVTMSQALGMEYLGLSLHLHIAAQNPQVILYNNYPREWNEHY 66 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + + L P IW V G V Sbjct: 67 RQGNFLTIDPIVSMCHKTLKPQIWSDELYCEVP-----HFRESAMRFGITHGWTQSVFDQ 121 Query: 126 FHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSC 181 H + + + + + C + E ++ S NL+ERE Sbjct: 122 RHNESQLSVCRGKRPIKVKEVYDKASQVMWLCNTLHAALSEHHLEKLSPTPNLSERELEV 181 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA A G + Sbjct: 182 LKWSAGGKTAADVATILSLSTSTVNFHIRSVINKTNAANKAGAIAVAFLRGLL 234 >gi|237807075|ref|YP_002891515.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237499336|gb|ACQ91929.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 254 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 73/202 (36%), Gaps = 7/202 (3%) Query: 27 RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86 A NF Y + L +Q + L + + D + P Sbjct: 31 LCAANNFEYYQLCLTLRRGLQQTDLTLLTQTPDNWAEHYAKNNTIQNDSLYQRAQTQSRP 90 Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-LMLANEV 145 + WQS E E L + GIA P+ GY + + + Sbjct: 91 LFWQS---EAKPEHENFLPMDCWRQFGMEEGIAVPLHGPAGFCGYFALSRHKKEPIRLQD 147 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + ++LF S NL+ RE CL +G TS EIA+ LG++ TV Sbjct: 148 FFHLSYLGHILQEQAIQLF---SPEQSNLSGREKECLFWVSEGKTSWEIAQILGITERTV 204 Query: 206 NAYLGSATVKLDAVNRIQAIAK 227 N +L +A K NR Q +AK Sbjct: 205 NFHLNNAIRKSGCKNRYQTVAK 226 >gi|289625636|ref|ZP_06458590.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646651|ref|ZP_06477994.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298488410|ref|ZP_07006441.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157035|gb|EFH98124.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868197|gb|EGH02906.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 254 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S++ + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTVDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113 D + D + + P +W +T I + VR Sbjct: 65 ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + S+ A + + E LF + Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDAALEDARQSLAEFGLLAQAFQEVAYPLFDQKM 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|33326387|gb|AAQ08608.1| putative transcription regulator [Agrobacterium vitis] Length = 248 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 64/211 (30%), Gaps = 9/211 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS- 91 F Y + + + + + + D + + P W Sbjct: 37 FDYYGLVRSPKPDQNPMSLVLAGRWPEKWPQVYITKKFVLIDPAIRYLAQAQRPFRWSET 96 Query: 92 --IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 + Q + G FP+ + + L I+ Sbjct: 97 LTAFSQDPHFKRMQRMMMDAQRFGLEEGYIFPIHGRGGLLANMTIGGRSVELTPIEIMLF 156 Query: 150 HGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E+ + + LT RE L G+G TS E+++ L +S H Sbjct: 157 DTVAKCAFWRLAEINGEDELLSMVQKVDVRLTRRELEILNYLGEGMTSNEMSKLLEISNH 216 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV+ Y+ KL+A NR +A A R G I Sbjct: 217 TVDWYVNELQDKLNAKNRQHMVAIAYRLGLI 247 >gi|197337087|ref|YP_002158591.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] gi|197314339|gb|ACH63788.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] Length = 252 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 197 CEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 245 >gi|462556|sp|P12746|LUXR_VIBFI RecName: Full=Transcriptional activator protein luxR gi|5726578|gb|AAD48473.1|AF170104_1 regulatory protein LuxR [Aliivibrio fischeri] gi|155231|gb|AAA27540.1| luxR protein [Aliivibrio fischeri] gi|59800242|gb|AAX07424.1| LuxR [Expression vector pLuxR-wt] gi|59800247|gb|AAX07428.1| LuxR-mut [Expression vector pHTSUB-105] gi|60594754|gb|AAX29978.1| LuxR [Cloning vector pHTSUB-106] Length = 250 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 20 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 76 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 77 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 135 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 136 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 194 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 195 CEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|330888704|gb|EGH21365.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 254 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S++ + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTVDQQMDCALLLASELGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113 D + D + + P +W +T I + VR Sbjct: 65 ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + S+ A + + E + LF + Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDAALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA+ L SV TV +L SA KL A NR+QA+ Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADHLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|254471852|ref|ZP_05085253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] gi|211959054|gb|EEA94253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] Length = 254 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 75/230 (32%), Gaps = 17/230 (7%) Query: 17 LSPRLHLIQNRIKARNF---ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L R + + F A + +Q IC L N+ D + N + Sbjct: 28 LQARWEELTRFAEKLGFEKGAYIIVPKIEGRVEDRQPIC-LSNHSQDWVEHYNSHHYYFK 86 Query: 74 DDFLFHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + H SG + W + + G+ P+ Sbjct: 87 DPGMDHLLSGRK-VDQLWTDYTVRPTSKVDSDFFNDVRSA-GLKFGVTIPL--ECSNKHL 142 Query: 132 VIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSSAARNL------TERETSCLQL 184 V S ++ +A V+ + LF + L T RE CL Sbjct: 143 VGGASFASCERTQLGFDAQMTSNYPVLKGAVHLFHTYAQEPETLSEFFGFTPREHECLLW 202 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA L LS TV ++ A KL NR A+A+A+ F + Sbjct: 203 LTAGRANKEIAHILNLSEKTVEHHIKRACKKLRVTNRTHAVARAMTFQLL 252 >gi|218663535|ref|ZP_03519465.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 240 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 67/223 (30%), Gaps = 4/223 (1%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 + E+ + + + F + T+ + I + N+ + D + Sbjct: 19 THYEVFKYMKGLTQDLGMTAFLIMTLPTVEFVEIGATKI--ITNWPAEMVDYYDAHNLMV 76 Query: 73 GDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + P + + L G FP+ G Sbjct: 77 DSPVIRRMLRSTSPFNYDVEAINTDRGGGKKSTVIDLFRRYGMEKGAYFPLHDAAGGRGA 136 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + E+ + +L T E CL+L G S Sbjct: 137 MSISGSRNFSMIEMAKIL-FIATLIYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGGRKS 195 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ L LS + VN ++GS KL R QA+ A+R I Sbjct: 196 SEIAKLLHLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|313500551|gb|ADR61917.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 235 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 10/222 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + + + + +N + + + NY + + D Sbjct: 19 QKLFDIAVHLAQDLDMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAA 78 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 +S +P++W + + + G + H + Sbjct: 79 NLSHSSTMPVLWTDELYKEAPQ-----FREMACLHGLRHGWTQSLHDQQHNESQISVARP 133 Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSE 192 + + + C+ + E ++ERE L+ + G T+ Sbjct: 134 NGPIDEVELYDKAGSVQWLCHALHAVLGEHHLNALCPPQPKMSERELEVLKWSAAGKTAA 193 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++A L LS TVN ++ S K +A N+ AIA A G+I Sbjct: 194 DVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235 >gi|330958109|gb|EGH58369.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 254 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 90/248 (36%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +++L + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSAATLDQQMDCALLLASHMGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113 D + D + + P +W +T I + VR Sbjct: 65 ADWHSLWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDLHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLEL--FKK 166 G+ P+ + + L A + + E + L K Sbjct: 125 MTCGVTAPIHMPKGGFATLTGLRSDNSDIALEDARQSLAEFGLLAHAFQEVAYPLFDEKM 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ Sbjct: 185 RSCTAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|213966697|ref|ZP_03394848.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|301383210|ref|ZP_07231628.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato Max13] gi|302059053|ref|ZP_07250594.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato K40] gi|302133729|ref|ZP_07259719.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928547|gb|EEB62091.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|331018431|gb|EGH98487.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 254 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S+L + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113 D + D + + P +W +T + + VR Sbjct: 65 ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLQTFLTDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + L A + + E + LF + Sbjct: 125 MTCGLTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|294851589|ref|ZP_06792262.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294820178|gb|EFG37177.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 238 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 79/234 (33%), Gaps = 17/234 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L + + + F + ++ + Sbjct: 14 QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + +IW + + GI+ P Sbjct: 71 NYAEIDPLLRRGVNSIDLLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 126 FGLLSFVRSGPALTPGEISML-RRQLQMLTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238 >gi|148258315|ref|YP_001242900.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410488|gb|ABQ38994.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 242 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 68/218 (31%), Gaps = 2/218 (0%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + L + I F Y + + Q + + + D+ D Sbjct: 24 ASVLSQFEKMIGDLGFHAYIMAGVPAPGQSLQHTILANGWPSEWFDLYAREQFHRYDPIP 83 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 H S L P W + E + G P+ G V E Sbjct: 84 RHCLSTLNPFAWSEAPYDRNDEPGAHEVMTRARDFRLNEGFCVPIHYDD-AVGAVSLAGE 142 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAE 196 LA + H + L + S +R L+ E L A G T+ E A Sbjct: 143 RPNLAPDARGALHLISIFTHSRLRALARATSGGQSRRLSRIEAEVLSWAARGKTAWETAR 202 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S V +L A KL+ N+ +A A+ G I Sbjct: 203 ILGVSERNVRWHLEEAQRKLETKNKTATVATALVNGEI 240 >gi|299132715|ref|ZP_07025910.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298592852|gb|EFI53052.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 241 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 11/217 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L + FA +++ + + NY ++ D D Sbjct: 21 LRTVLADAGAALDLSCFAYLSMSPRRGG-----VPELISNYPVEWTDHYLREHYERVDPV 75 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + +G P W + S + G P+ V F + Sbjct: 76 IAVALAGTEPFEWGQEFAAKRLSKSQCALLDEAAQFGIRCGFTVPIHDSRGPVAAVTFAA 135 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYT 190 + + IE + + Q++ + +R + L+ RE CL+ A G + Sbjct: 136 DERRPTFQRCIEQNRSVLQLMAMYFHAHARRRLSINRVIDGVALSPREFECLEWAAQGKS 195 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + EI L +S T +L +A +K QA+AK Sbjct: 196 AWEIGRLLNISRRTAAFHLDNAKMKFGVRTICQAVAK 232 >gi|170727337|ref|YP_001761363.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812684|gb|ACA87268.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 250 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 71/221 (32%), Gaps = 13/221 (5%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLI----CELHNYDLDSGDIPNILIETYGDDF 76 + +QN ++ AL + D + + + ++ +I Y D Sbjct: 36 VKALQNLLEVDGVALINLILRPDHTITIERVVSSGFGFESKSVEWDNIYQKKKFQYIDPV 95 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA---FPVRLGFHKNGYVI 133 + S W S+ + + + G + F R + + Sbjct: 96 VSCSASFRRSFNWASVPSMITLSEVQFNFLERAQEMGLKEGASIGSFSTRQIYKELTITS 155 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 L E + L A LT RE+ L + +G +S E Sbjct: 156 VCG--CSLNPEQLASLELINAVSAQAMKRL----ILPAEKLTGRESEILAWSSEGKSSWE 209 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I ++ TV +L + KL+ NR QAI AIR G I Sbjct: 210 IGMICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRLGLI 250 >gi|28871673|ref|NP_794292.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28854925|gb|AAO57987.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato str. DC3000] Length = 254 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S+L + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTLDQQMDCALLLASDMGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113 D + D + + P +W +T + + VR Sbjct: 65 ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLQTFLTDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + L A + + E + LF + Sbjct: 125 MTCGLTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|288960338|ref|YP_003450678.1| transcriptional regulator [Azospirillum sp. B510] gi|288912646|dbj|BAI74134.1| transcriptional regulator [Azospirillum sp. B510] Length = 287 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 71/225 (31%), Gaps = 11/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 + S L I + + N + + + L Y D Sbjct: 68 DKSHFLSRIIDSVGPFNVTYF---GTQCTSSPDRHVNLLTTYSEKWRMRYFDRRYENIDP 124 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 L +P+ W + + G+ F +R + V Sbjct: 125 VLSAARRATMPVDWDQLP--KTDSGVEDFIADALCYGIRLQGVTFSLRDMHQRLAIVSLQ 182 Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGY 189 S V I + + + + + L+ RE L A G Sbjct: 183 SNDDPAVWRVRRPRIIPDFIHFSLALHSAMVSSEPDDAEEVPCKLSPREREVLDWASRGK 242 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS E LGLS TVN YL +A K++A ++QA A+A+R G I Sbjct: 243 TSWETGMVLGLSEKTVNFYLRNACQKMNAATKVQAAAQAVREGLI 287 >gi|190890862|ref|YP_001977404.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190696141|gb|ACE90226.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 240 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 69/224 (30%), Gaps = 4/224 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ E+ + + + F + T+ + I + N+ + D + Sbjct: 18 NTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKI--ITNWPAEMVDYYDSHNLM 75 Query: 72 YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + P + E + L G FPV G Sbjct: 76 VDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGRG 135 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + E+ + +L T E CL+L G Sbjct: 136 AMSISGSRNFTMLEMAKIL-FIATLIYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGGRK 194 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S EIA+ L LS + VN ++GS KL R QA+ A+R I Sbjct: 195 SSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|283478850|emb|CAY74766.1| DNA-binding transcriptional activator SdiA [Erwinia pyrifoliae DSM 12163] Length = 242 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 10/216 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 I+ +++ Y++ P + NY D + D L S Sbjct: 32 IEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPEDWLEHYFREDFYQLDPVLKMCGSP 91 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----L 139 IW + SSG F G++ V G ++ + Sbjct: 92 GK--IW---LWDDEAISSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSMSTANSLKTI 146 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198 L + ++ + +++ + + +L++RE L+ +G TS EI+ L Sbjct: 147 ELTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLIL 206 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +TVN + + +A N+ Q + A G I Sbjct: 207 SISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 242 >gi|259908860|ref|YP_002649216.1| Regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224964482|emb|CAX55992.1| Regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 240 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 10/216 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 I+ +++ Y++ P + NY D + D L S Sbjct: 30 IEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPEDWLEHYFREDFYQLDPVLKMCGSP 89 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----L 139 IW + SSG F G++ V G ++ + Sbjct: 90 GK--IW---LWDDEAISSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSMSTANSLKTI 144 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198 L + ++ + +++ + + +L++RE L+ +G TS EI+ L Sbjct: 145 ELTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLIL 204 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +TVN + + +A N+ Q + A G I Sbjct: 205 SISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240 >gi|301305257|ref|ZP_07211354.1| autoinducer binding domain protein [Escherichia coli MS 124-1] gi|300839463|gb|EFK67223.1| autoinducer binding domain protein [Escherichia coli MS 124-1] Length = 226 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 13/216 (6%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIEFQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F+ L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L+ +G TS EIA L +S +TVN + + K Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKK 221 >gi|289624509|ref|ZP_06457463.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869296|gb|EGH04005.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 261 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 62/220 (28%), Gaps = 15/220 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L++L + I +A ++ R L NY Sbjct: 24 LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + H + P W+ + + R +G F + + Sbjct: 79 DPIIKHAWHSITPFFWREARNAAQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137 Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + I ++I A L+ RET L+ Sbjct: 138 LCNARQQKDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G + EIAE +S TV ++ + + KL+ QA Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQA 237 >gi|157370075|ref|YP_001478064.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157321839|gb|ABV40936.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 238 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 12/214 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S + L + +A F ++ +P + + N+ + L Sbjct: 14 TSQPDRKVFLSQLAPCAQALGFEYFSYTVFSCYPASRPKMLIEGNFPECYLEDYRKLRVY 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + L W + +L R+ G + V+ + + G Sbjct: 74 LQDPVIEQAHHSTLQFYWDE----HFYQDKPELWWRMAQ-FGIREGWSQSVKDCYGRLGI 128 Query: 132 VIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA--RNLTERETSCLQL 184 + F + + + + + V E + A LT RE L+ Sbjct: 129 LTFAGKSIPVQSPQASARNETFFLWLAQMVHKTLREALISVNDEAIKDVLTLREKDILRW 188 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +G TSEE A +GLS TVN ++G++ KL Sbjct: 189 CSEGKTSEETALLMGLSERTVNFHIGNSIKKLSV 222 >gi|27802474|gb|AAO21112.1| TraR [Rhizobium leguminosarum bv. viciae] Length = 234 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 68/222 (30%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + L N FA + ++Y + DI + D Sbjct: 21 IKSALKSFANTYGFERFAY--------LQTEGAEVRAFNSYPEEWQDIYLGNQYSRIDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + W + S + +G+ PV F + F S Sbjct: 73 VTEAKRRMEMFSWTANDWPARGTSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMMLTFAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192 + +A A V+ L + R L+ RE CL A G ++ Sbjct: 133 SRQTADGSKLRDAQKAIQAVLAIHYRLKIIAATTIVAPKRLLSPREAMCLMWAARGKSAP 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E A G++ TV YL A KL+A Q +A A G + Sbjct: 193 ETAMLTGINPRTVQHYLDKAREKLEAATVPQLVAIAKDHGLV 234 >gi|170700574|ref|ZP_02891575.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134522|gb|EDT02849.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 240 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 69/225 (30%), Gaps = 10/225 (4%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN----YDLDSGDIPNILIETY 72 L +L+ N + F Y ++ F R Y + + Sbjct: 17 LRSLTNLLANAAHSLGFPCYAVSRVSRFRSRSSPRIFAETIHVHYPDNWVNHYLAHDYGL 76 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D P W I + + + GI+ P+ Sbjct: 77 VDPVHRAAFIYNSPYRWSDIP---GLSEPERRVLGEAHDAGLTHGISIPIYEPDGSVLLF 133 Query: 133 IFTSE-FLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189 F+ + + A A +F L L+ R+ CL G G Sbjct: 134 SFSGPPHRVNTALNVRRAQLASLLFHAEFQRLAPIPHVEPPTLRLSPRQQECLYWVGQGK 193 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI +G+S HTV+ +L A L+ +R +A A +G I Sbjct: 194 TSPEIGMIMGISHHTVDYHLSEAMKILNVNSRTKAAVFASTYGLI 238 >gi|115523303|ref|YP_780214.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517250|gb|ABJ05234.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 237 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 11/233 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++++S+ +L L +N + + + Q L YD Sbjct: 10 IERANSVADLGRILVDWRNESGVAHLVYHATHVPAC---EQPNPVLLLTYDDAWVKRYVE 66 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + +LPI W ++ E + E + G+ P+R Sbjct: 67 RNYFSIDPVVVAGRDAVLPIDWMAV--EHDTPEARHFFAEAESFGVGRHGLTLPIRGPAA 124 Query: 128 KNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSC 181 + T+ + + H + + + L R R L+ RE C Sbjct: 125 ERALFTVTTNATDDHWHRWRFSYMKDFHLLAHYLHDRAMRLAGLRLDHVMRPLSSRERQC 184 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T +IA +L LS V+ YL +A KLD QAIAKA+R + Sbjct: 185 LNGLVRGRTPGQIAGELDLSGSAVHGYLRTARRKLDCATVEQAIAKAVRLDLL 237 >gi|170719977|ref|YP_001747665.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169757980|gb|ACA71296.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 236 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 9/221 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L + + + + + + NY L + D Sbjct: 19 QKVFDLAVHLAQDLGMEFMGLKLRIQLAAQAPKLYLYSNYPLAWIERYQRDEFYKQDPAA 78 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 ++ P++W + G + H V Sbjct: 79 ALSHTSTEPVLWTDELYSEAPD-----FREQACKHGLRHGWTQSLHDLRHNETQVSVARP 133 Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F + + + C+ + E + S+ +++RE L+ + G T+ + Sbjct: 134 FGKIDIHELYDKAGQVQWLCHTLHDTICEHHLAKLSSPLKMSDRELEVLKWSAAGKTAAD 193 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A L LS TVN ++ S K +A N+ A+A A+ G I Sbjct: 194 VACILSLSQSTVNFHIRSVITKTNASNKAGAVAIAMMRGLI 234 >gi|541659|dbj|BAA06490.1| LasR [Pseudomonas aeruginosa] Length = 239 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 74/246 (30%), Gaps = 23/246 (9%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L ++SS E S L + + + + + + NY Sbjct: 3 LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + D + H +LPI W + G+ Sbjct: 60 WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168 P+ + G + + + E EA+ V+ L F+ Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPV 171 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT E LQ G TS EI+ S VN ++G+ K +R A A Sbjct: 172 SKPVVLTSWEKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231 Query: 229 IRFGYI 234 + G I Sbjct: 232 VNLGLI 237 >gi|310767240|gb|ADP12190.1| DNA-binding transcriptional activator SdiA [Erwinia sp. Ejp617] Length = 240 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 10/216 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 I+ +++ Y++ P + NY D + D L +S Sbjct: 30 IEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPEDWLEHYFREDFYQLDPVLKMCSSP 89 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----L 139 IW + SSG F G++ V G ++ + Sbjct: 90 GK--IW---LWDDEAMSSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSVSTAKSLKTI 144 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198 L + ++ + +++ + + +L++RE L+ +G TS EI+ L Sbjct: 145 ELTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLIL 204 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +TVN + + +A N+ Q + A G I Sbjct: 205 SISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240 >gi|77458474|ref|YP_347979.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382477|gb|ABA73990.1| putative transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf0-1] Length = 239 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 74/231 (32%), Gaps = 9/231 (3%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L + + +L + + F L++ ++ +++ ++ D + Sbjct: 14 LDIEAAPTLVAIQKAVRGFAGAYGYDRFVLFS-ATSASEDVVERIYWVEGDWFGDGIAVD 72 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRL 124 H W +QE++ G+L + P G+ PV Sbjct: 73 -AQTYVQRCPVTRHLLDARESFFWSKVQEQS-----GELYRLVRVPSGPGVHGLQIPVFG 126 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQ 183 G + E + + V + L + A L+ RE L Sbjct: 127 PQGLEGAMSLGGEQIDASARVRLALGMLASVAFFSARRLLEAPLDETAGKLSTREREVLA 186 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +IA LGLS TV +L SA L QAI AIR G I Sbjct: 187 WVAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEI 237 >gi|310686584|gb|ADP02958.1| LuxR [Cloning vector pLR3] gi|310686589|gb|ADP02962.1| LuxR [Cloning vector pLR4] Length = 269 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 39 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 95 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 96 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 154 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 155 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 213 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 214 CEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 262 >gi|47177072|ref|YP_015683.1| hypothetical protein pHCG3_p118 [Oligotropha carboxidovorans OM5] gi|47115463|emb|CAG28516.1| probable TraR [Oligotropha carboxidovorans OM5] Length = 239 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 71/217 (32%), Gaps = 10/217 (4%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 +++ ++ F + R C L Y + + D + Sbjct: 29 QALRHFCESNGFDRFA-----HLNVRSTETCVLTTYPAEWQRLYFDKKYALIDPVVISAK 83 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 + W + + R +G++ P+R F + SE + Sbjct: 84 RNMEIFSWSQDDASKYSKDVKRFF-READDFGIRSGLSIPIRTPFGGTAILTLASEQRRV 142 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEK 197 I + A V L + ++ R LT RE +CL A G T EIA+ Sbjct: 143 DFAGIQDTVRAMNAVAFAHAHLNRVAAAPCRRTKYELTPREVTCLTWASLGKTMSEIADL 202 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + V TV YL A KL N A+ A+ I Sbjct: 203 LQIDVRTVRNYLDLAREKLGGSNIAHAVRLAVMQHLI 239 >gi|155233|gb|AAA27541.1| luxR protein [Aliivibrio fischeri] gi|455385|gb|AAA27551.1| regulatory protein [Aliivibrio fischeri] gi|225902|prf||1403259A luxR gene Length = 250 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 20 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 76 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 77 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 135 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 136 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 194 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 195 CEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|330942061|gb|EGH44732.1| transcriptional regulator LasR [Pseudomonas syringae pv. pisi str. 1704B] Length = 239 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 71/224 (31%), Gaps = 10/224 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 ++ A D L +Y I + + D + Sbjct: 17 RSWFEALKANTCALGCDGLLFALKSDGNADNSQAALLSDYSQAWRAIYDANDYSRIDPVV 76 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 H S PI+W +T + G G++ P+ + G + + Sbjct: 77 SHCMSSTSPIVWNDSIFKTPL---QLEFREESKGHGVVQGVSLPLHGMAGQVGVLSVRLD 133 Query: 138 FLMLA------NEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYT 190 + ++ + FL L ++ + L+ RE L+ + G T Sbjct: 134 SIPQHQLKYHIARILPGLALIRDYAVDTFLSLADEREPNNIVQLSHRELEVLKWSAFGKT 193 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA L S +N + K + +R AI KA++ G + Sbjct: 194 TWEIARILSCSEANINYHFAKVRKKFNVGSRRMAIVKALQTGLL 237 >gi|159044364|ref|YP_001533158.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912124|gb|ABV93557.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 265 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 2/193 (1%) Query: 44 FPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ 103 + H + + DI D +P +W + E T + Sbjct: 65 VSATPRFHIIAHGFPREWVDIYVDDHLYEIDPIPALAQRRAVPFLWSEVAELTRLAEEQA 124 Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--NEVIIEAHGACYQVITDFL 161 + G+A V ++GYV + E + Sbjct: 125 AFLERSMPARVGDGVAIQVFGPNMRHGYVGMGFGDRPRDVTAPQLAEYQLVSQLMHLRAC 184 Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L ++R+ + L+ RET L G + IA+ LGLS HTV+ + KL+ +R Sbjct: 185 RLIEERNRSEIALSARETEVLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLEVFDR 244 Query: 222 IQAIAKAIRFGYI 234 AI KAI G + Sbjct: 245 TAAILKAINLGLV 257 >gi|330879513|gb|EGH13662.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 254 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S+L + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113 D + D + + P +W +T I + VR Sbjct: 65 ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLQTFITDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + L A + + E + LF + Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV T+ +L SA KL A NR+QA+ Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|209886745|ref|YP_002290602.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] gi|209874941|gb|ACI94737.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] Length = 195 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 62/178 (34%) Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 + D + W + + + Sbjct: 17 FPDGWAARYLDQNYLPRDPIVGRLQKDRNAFSWSESYKSCPEPDNVRAVGGEAADFGLVE 76 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G P+ + + F L+N I +L L + R + + L+ Sbjct: 77 GFVIPITTLDQRIAALSFGGARDDLSNRDRSALIFLANFAIGHWLYLRRPRPTCNKTLSP 136 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL AG+G T EI+ LG+S TV ++ SA KL+AVN+ AIA A+R + Sbjct: 137 RELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREKLNAVNKPHAIAIAMRLKIL 194 >gi|331092883|ref|ZP_04586362.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331125377|ref|ZP_04592751.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020753|gb|EGI00810.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027159|gb|EGI07214.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 235 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 8/216 (3%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 ++ + + Y ++ F + + Y LD D + H Sbjct: 21 LRKVLCRLGYKTYLLSI-GGFTTNEPSNRIITTYPLDWLKCYEDENFILIDPIVKHCRRH 79 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 +P+ W + S R G++ P+R + + Sbjct: 80 FMPLFWGGARRRARGRSKE--FWRARERHGLSQGVSIPLRCREMLGSFNVAHPVDSNEEF 137 Query: 144 EVII-----EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + ++ K + +LT RET L+ +G G T+ EI+ L Sbjct: 138 DDEVNVTFGVLFMLVPFLLEGSQRHLKAPGEQSCSLTMRETEVLKWSGAGKTTWEISRIL 197 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G S TVN ++ +A+ KL A NR+QA+ A+ +I Sbjct: 198 GCSERTVNFHIANASRKLGASNRLQAVGMALAQEFI 233 >gi|182679457|ref|YP_001833603.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635340|gb|ACB96114.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 239 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 73/222 (32%), Gaps = 7/222 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SL + R+ + F L+T ++A + +++ ++ + L Sbjct: 20 DSLSVIQDRIRAFAGPLGYDRFVLFTASAARE-DVVERIYWVEGDWFGTGEAVD-ALTYI 77 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 H P W + E+ + R G G+ P+ G Sbjct: 78 RRCPVNRHILEVSEPFFWTKTRSESGELYQVVRTPRGRG----VHGLQIPIFGPSGLEGA 133 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYT 190 + E + + + + L + SSA L+ RE L G Sbjct: 134 MSLGGERIDASPQARLALSLVGTAAFLSARRLLEAPNSSATAKLSHREREILAWTAAGRR 193 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +IA LGLS TV +L +L + QAI AIR G Sbjct: 194 QADIAATLGLSERTVENHLRRIRRRLAVMTTAQAIRVAIRNG 235 >gi|302878668|ref|YP_003847232.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302581457|gb|ADL55468.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 69/207 (33%), Gaps = 11/207 (5%) Query: 36 YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95 I P + + NY D + + D H S P+IW + Sbjct: 37 LAILPDPRAPIEAEHAFQQSNYSADWLNKYTAEKLHHVDPTFSHCISKSTPLIWS---PK 93 Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE---FLMLANEV---IIEA 149 + G +G+ P+ + G V F S+ + + E Sbjct: 94 IFSAQKQKEMYEEACGYGVKSGVTLPIHGAKGELGIVCFVSDTKPDKRFHRDANHHLPEL 153 Query: 150 HGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L+ K + T RE CL+ + G +S EI L + TVN Sbjct: 154 ACFRDFILESSLQFMKPSRQVENPISVTHRELECLKWSASGKSSWEIGHILNCTEATVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K +R QAI KAI G I Sbjct: 214 HFSNIRRKFSTTSRQQAIVKAISLGLI 240 >gi|218677689|ref|ZP_03525586.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 240 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 4/224 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ E+ + + + F T+ + + I + N+ + D + Sbjct: 18 NTHYEVFKYMKGLTQDLGMNAFLFMTLPTVDNVEIGATKI--ITNWPAEMVDYYDAHSLL 75 Query: 72 YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + P + E + L G FPV G Sbjct: 76 IDSPVIRRMLRSTSPFNYDVEAINTNRGEGKKSTVIELFFRYGMEKGAYFPVHDAAGGRG 135 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + E + + + +L T E CL+L G Sbjct: 136 AMSISGPRNFSMIE-MAKLLFIATLIYDRLSQLTLNEKHKPIEFTPGELDCLRLTAGGRK 194 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ L L+ + VN ++GSA KL R QA+ A+R I Sbjct: 195 GSEIAKLLDLTENVVNNHIGSAIKKLGCTTRTQAVVSALRLNII 238 >gi|20804002|emb|CAD31579.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti R7A] Length = 241 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 13/230 (5%) Query: 4 NTLTGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 TL + S S+ + L FA ++ R + NY Sbjct: 6 ETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSL-----VSDRVTKPRLISNYHSGW 60 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D + P W I + Q G+ P Sbjct: 61 TSHYLRHQYERIDPVIEWARCSEYPFQWGPDFGHAGISTRQQQLFDEAAEFGICCGLTIP 120 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLT 175 + + F ++ L + E + +++ + +R + +LT Sbjct: 121 LVDRRGGVAAMTFAADRLDPTFLRVAEKYEQALEIMAMCFHIGVRRKLSCGLAVDGVSLT 180 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE CL+ G ++ EI LG+ T +L +A KL + QA+ Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230 >gi|307141914|gb|ADN34749.1| transcriptional activator CmrR [Pseudomonas sp. CMR12a] Length = 235 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 16/226 (7%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 S ++ R+ ++ F + FP ++ + +NY + Sbjct: 17 SESQIVKRIQEAATMLE---FEYCAYGLQVIFP--EEKVVMFNNYPRQWQRRYDTENYLA 71 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + PIIW + + G + + Sbjct: 72 IDPIVAQGRQSQTPIIWAD-----SVSREAPIFWEEARAAGLKVGWSQSSINAAGAASML 126 Query: 133 IFTSEFLMLANEVI----IEAHGACYQVITDFL-ELFKKRSSAAR-NLTERETSCLQLAG 186 + + + + I+ + + ++ LT RE L+ G Sbjct: 127 SLSRSSQPITRQELDANEIKMRWLVNVAHLALSNRISTRLANPYEVKLTSREKEVLKWTG 186 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G TS EI+ L +S +TVN ++ ++ +KL A N+ A+ +A G Sbjct: 187 SGKTSFEISCLLAISENTVNFHIKNSILKLSAANKTAAVIQAFLTG 232 >gi|304394107|ref|ZP_07376030.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] gi|303293547|gb|EFL87924.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] Length = 240 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 6/230 (2%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + ++ + N A F++ T++ + ++N+D + + + Sbjct: 13 ISRLETAYDVFRYARRLGNDFGASRFSILTLDKQTSAI---SDLGVVNNWDPELIAVYDE 69 Query: 68 LIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + L HF +G + + + S L+ L G PV G Sbjct: 70 NGLSKASPVLGHFETGNRVMTYDMDTMLQERAPESAALARELFNDFDMKYGACCPVNDGK 129 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184 G ++F+ L+L + H + +++ + + +L+ RE CL Sbjct: 130 GNRGGLVFSGNELVLNPDDGAMLHLLSNYLYDHLVQISATSVTRSEMPSLSGREMDCLSH 189 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G TS+E A L LS HTV YL A KL+AVNR+ A+AKA+R G + Sbjct: 190 AALGKTSKETARDLELSDHTVTHYLALACKKLEAVNRVHAVAKALRLGLL 239 >gi|188534209|ref|YP_001908006.1| Regulatory protein [Erwinia tasmaniensis Et1/99] gi|188029251|emb|CAO97128.1| Regulatory protein [Erwinia tasmaniensis Et1/99] Length = 240 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 15/243 (6%) Query: 2 SEN-TLTGKKSSSLQE----LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN 56 SEN + S + ++ +I+ ++K Y++ P + N Sbjct: 3 SENYFIWRADLKSAYDNGSGIAHITRVIEQQLKELELDFYSLFIRHPVPFTRPKTFLYSN 62 Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 Y + + D L + +W + GQ + Sbjct: 63 YPQNWLEHYWREDFYQLDPVLKICSVPGKVWLWDDEDLSS-----GQRVFDDARIHGIYH 117 Query: 117 GIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 GI+ V G + ++ + ++L E+ ++ + +++ + + Sbjct: 118 GISCSVMASNRSVGILSMSTANALKNIVLTPEIELKIQYISELTMAALIDINDISMATTK 177 Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ERE L+ +G TS EI+ L +S +TVN + + +A N+ Q + A Sbjct: 178 LDLSERELEVLKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAI 237 Query: 232 GYI 234 G I Sbjct: 238 GLI 240 >gi|323139012|ref|ZP_08074072.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] gi|322395766|gb|EFX98307.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] Length = 267 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 79/231 (34%), Gaps = 11/231 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ ++ S + N N A +N R Y ++ Sbjct: 27 RADRVEAASDIITGFTNAWGLHNVAYAALNMPSPGAARP---LLSMTYSVEWQKHYAQSG 83 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + G+LPI W I I + + G++ P+R + Sbjct: 84 YVDIDPIVRSGLGGILPIDWSEIDRGDPIIRK--FFGEAQELDVGANGMSIPIRGRHGEF 141 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQ 183 TS L ++I + + L + + +L RE SCL+ Sbjct: 142 ALFTVTSNENALEWRAIRRDLIRDLMVVAWNFHAAALRSCGELAEPGDVHLPLREASCLR 201 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EEI L +S HTV +L SA +L+ N +AKA+ G I Sbjct: 202 WKALGKTDEEIGRILVISPHTVRFHLESARARLNTANTTHTVAKALALGLI 252 >gi|161724877|emb|CAO85750.1| LasR protein [Pseudomonas aeruginosa] Length = 239 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 74/246 (30%), Gaps = 23/246 (9%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L ++SS E S L + + + + + + NY Sbjct: 3 LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLHKDSQDYENAFIVGNYPAA 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + D + +LPI W + G+ Sbjct: 60 WHEHYDRTGYARVDPTVSQCTQNVLPIFW---EASIYQTRKQHEFFEEASAAGLVYGLTM 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168 P+ + G + + + E EA+ V+ L F+ Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPV 171 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE LQ G TS EI+ S VN ++G+ K +R A A Sbjct: 172 SKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231 Query: 229 IRFGYI 234 + G I Sbjct: 232 VNLGLI 237 >gi|86356800|ref|YP_468692.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280902|gb|ABC89965.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 240 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 8/226 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ E+ + + + F + T+ + I + N+ + D + Sbjct: 18 NTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKI--ITNWPAEMVDYYDAHNLM 75 Query: 72 YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + P + E + L G FPV G Sbjct: 76 VDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGRG 135 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDF--LELFKKRSSAARNLTERETSCLQLAGDG 188 + + + + + + L L +K A T+ E CL+L G Sbjct: 136 AMSISGSR-NFSMVEMAKLLFIATLIYDRLSQLTLNEKHKPVA--FTQSELDCLRLTAGG 192 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S EIA+ L LS VN +GS KL R QA+ A+R I Sbjct: 193 RKSSEIAKLLDLSESAVNNQIGSVIRKLGCTTRTQAVVSALRLNII 238 >gi|13475096|ref|NP_106660.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025847|dbj|BAB52446.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 241 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 13/230 (5%) Query: 4 NTLTGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 TL + S S+ + L FA ++ R + NY Sbjct: 6 ETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSL-----VSDRVTKPRLISNYHSGW 60 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D + P W I + Q G+ P Sbjct: 61 TSHYLRHQYERIDPVIEWARCSECPFQWGPGLGHAGISTRQQQLFDEAAEFGICCGLTIP 120 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD------FLELFKKRSSAARNLT 175 + + F ++ L + E + +++ +L + + +LT Sbjct: 121 LVDRRGGVAAMTFAADRLDPTFLRVAEQYEQALEIMAMCFHIGVRRKLARGLAVDGVSLT 180 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE CL+ G ++ EI LG+ T +L +A KL + QA+ Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230 >gi|218463347|ref|ZP_03503438.1| transcriptional regulator, LuxR family protein [Rhizobium etli Kim 5] Length = 240 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 66/223 (29%), Gaps = 4/223 (1%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 + E+ + + + F T+ + I + N+ + D + Sbjct: 19 THYEVFKYMKGLTQDLGMNAFLFMTLPTVDIVEIGATKI--ITNWPAEMVDYYDAHNLMI 76 Query: 73 GDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + P + + L G FPV G Sbjct: 77 DSPVIRRMMRSTSPFNYDVEAINTNRGGGKKSTVIELFNRYGMEKGAYFPVHDAAGGRGS 136 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + E + + + +L T E CL+L G Sbjct: 137 MSISGSRNFSMIE-MAKLLFIATLIYDRLSQLTLNEKHKPIEFTRSELDCLRLTAGGRKG 195 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ L L+ + VN ++GS KL R QA+ A+R I Sbjct: 196 NEIAKLLDLTENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|330809090|ref|YP_004353552.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377198|gb|AEA68548.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 272 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 13/226 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNILIETYGD 74 + L+ + ++ F Y I+ P L + + + D Sbjct: 34 DWERLLNKVLRQL---GFGSYLISLGPVAPRDTDPLAGLITTFPKRWLEHYRCDGLIEID 90 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L H L+P+ W E + +G++ P+R G + Sbjct: 91 PILRHCRRELVPLFWD--SERRRARGRSRHFWEQREQHGLRSGVSIPLRY-EMLRGTLSV 147 Query: 135 TSEFLMLANE------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + + + ++ ++ + ++LT +E CL A +G Sbjct: 148 AFDDTQITEQKGFSNPAVYQLFMLIPYLLAGIRHQLQRPAQPRQDLTPKEMDCLYWASEG 207 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EI+ L S T++ +L +A KL +V+R QA++ A+ G + Sbjct: 208 KTTWEISHILTCSERTIDFHLLNARRKLGSVSRQQAVSAAVACGLV 253 >gi|110634656|ref|YP_674864.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285640|gb|ABG63699.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 265 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 1/224 (0%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 + +E++ L + R + I + R Q L + + L Sbjct: 41 RTTEEVNHSLMIFLQRYGVTSLIAGMIPPSNSSRREQLSYVLLDGWPEEWKRRYFSLGYL 100 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + D + G W I+E + G+ + AG+ F K Sbjct: 101 HRDPAIHLVRRGCPHFHWSEIREHCSVCPIGRRIMNEAREFQLRAGVTFSFPTLESKTFG 160 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYT 190 + +E L LA + + L L + +L+ R+ + A +G T Sbjct: 161 FLVAAEELDLAETDLFTLQFVAAFGLGCALTLAGGVVGRSNVHLSRRQREVVAWASEGLT 220 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIAE+L +SVHT + +L + +L N + A+A+A+R G I Sbjct: 221 ADEIAERLNVSVHTADMHLRAVRTRLGVANTVHAVAEALRLGLI 264 >gi|107100865|ref|ZP_01364783.1| hypothetical protein PaerPA_01001895 [Pseudomonas aeruginosa PACS2] gi|296390203|ref|ZP_06879678.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAb1] Length = 223 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 68/231 (29%), Gaps = 23/231 (9%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 E S L + + + + + + NY + + D Sbjct: 2 EWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDP 58 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H +LPI W + G+ P+ + G + + Sbjct: 59 TVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLS 115 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRSSAARNLTERETSCLQ 183 + E EA+ V+ L F+ S LT RE LQ Sbjct: 116 -----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEVLQ 170 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI+ S VN ++G+ K +R A A+ G I Sbjct: 171 WCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 221 >gi|330941017|gb|EGH43939.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 262 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 11/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYGD 74 + L + ++ FA Y I+ + P L + + D D Sbjct: 16 DWERHLRKVMRQL---GFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDCYCCDGLLDID 72 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVI 133 L H L+P+ W + + G++ P+R V Sbjct: 73 PILKHCRQELVPMFWAQQGRRARG--RTRHFWQRREEHGLCHGLSIPLRYERLRGTLSVA 130 Query: 134 FTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 F E A+ +++ ++ + +LT RE CL A G Sbjct: 131 FDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECLYWASAGK 190 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI+ L S TV+ +L +A KL +V+R QA+ A G + Sbjct: 191 TSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235 >gi|150377494|ref|YP_001314089.1| autoinducer-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150032041|gb|ABR64156.1| Autoinducer-binding domain protein [Sinorhizobium medicae WSM419] Length = 320 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 65/222 (29%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + + N FA + + ++Y + DI + D Sbjct: 107 IKSAVLSFANAHGFERFAY--------LQTQGDDVQTFNSYPEEWQDIYLGSRYSIIDPV 158 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + W S + +G+ PV F + F S Sbjct: 159 ITEAKRRMNVFSWTVDDWPARGRSELRRFKDQAVAHGIRSGVTVPVEGSFGSKMMLTFAS 218 Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192 + +A A V+ L S L+ RE CL A G Sbjct: 219 SERKADVSKLQDAQDAIQAVLVIHYRLKILAAVTIVSPKTMLSPREAMCLMWAMKGKNGP 278 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E A+ G+ TV YL +A KL A + +A A G + Sbjct: 279 ETAKITGIKPRTVQHYLDNARRKLGAQSVPHLVAIARDHGLV 320 >gi|146338047|ref|YP_001203095.1| putative N-acyl homoserine lactone transcriptional regulator, LuxR-like [Bradyrhizobium sp. ORS278] gi|146190853|emb|CAL74858.1| putative N-acyl homoserine lactone transcriptional regulator, LuxR-like [Bradyrhizobium sp. ORS278] Length = 242 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 67/218 (30%), Gaps = 2/218 (0%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + + + I F Y + + Q + + + ++ D Sbjct: 24 ASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILANGWPREWFEMYAREQFHRCDPIP 83 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 H S L P W + + + + G P+ G V E Sbjct: 84 RHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRLNEGFCVPIHYDD-AVGAVSIAGE 142 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAE 196 LA + H + L + + R L+ E L A G T+ E A Sbjct: 143 HPNLAPDARGALHLISIFTHSRLRALARATAGNPGRRLSRIEAEVLSWAARGKTAWETAR 202 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S V +L A KL N+ +A A+ G I Sbjct: 203 ILGVSERNVRWHLEEAQRKLATKNKTATVATALVNGEI 240 >gi|148256507|ref|YP_001241092.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408680|gb|ABQ37186.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 242 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 12/232 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++SL ELS L ++ + + N+ + L YD + Sbjct: 14 RTTSLSELSNVLSETRHEYELAHLVY---NARHLPRTEEPNPLLLLTYDAEWVQRYKTQD 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + H + LLP+ W ++ E+ + G+ P+R + Sbjct: 71 YFQIDPVIKHGLASLLPLDWSNL--ESGEADVRAFFREARSFGVGRNGMTIPIRGPHGER 128 Query: 130 GYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182 TS + ++ + Y + L R R L+ RE L Sbjct: 129 ALFSLTSNLSAGQWQTTRLAMMRDFMIIAYFFHDQAVRLSGMRDLPGMGRPLSRRERETL 188 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QLA G+ ++IA L +S V YL +A KL+ Q IAKAI I Sbjct: 189 QLAARGFAPKQIAADLRVSTTAVRLYLQTARTKLECTTLTQGIAKAISLDLI 240 >gi|297489|emb|CAA68561.1| luxR [Aliivibrio fischeri] Length = 250 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 10/231 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K+ +++ L + + T+ + I L NY + Sbjct: 17 KACRAYDINQCLSDMTKMVHCEY--YLTLAIIYPHSMVKSDISILDNYPKKWRQYYDDAN 74 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + NS PI W I E + ++ G +FP+ + Sbjct: 75 LIKYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGF 133 Query: 130 GYVIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G + F + + H ++ ++ ++ + + +LT+RE CL Sbjct: 134 GMLSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 193 WACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|289628275|ref|ZP_06461229.1| putative LuxR-family regulatory protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 262 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 11/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYGD 74 + L + ++ FA Y I+ + P L + + D D Sbjct: 16 DWERHLRKVMRQL---GFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDCYCCDGLLDID 72 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVI 133 L H L+P+ W + + G++ P+R V Sbjct: 73 PILKHCRQELVPMFWAQQGRRARG--RTRHFWQRREEHGLCHGLSIPLRYERLRGTLSVA 130 Query: 134 FTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 F E A+ +++ ++ + +LT RE CL A G Sbjct: 131 FDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECLYWASAGK 190 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI+ L S TV+ +L +A KL +V+R QA+ A G + Sbjct: 191 TSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235 >gi|192360157|ref|YP_001981723.1| putative two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190686322|gb|ACE84000.1| putative two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 238 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 4/226 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S ++Q L + I + + + +++ L NY D + Sbjct: 13 SKNIQSLFNLFEKYMSDIGFDR-VILGLMTDHPRLKKEAEHGFLKNYPADWVERYFDQKY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + W ++ + + F G+ +R Sbjct: 72 VHIDPVRHKAYDAIGAYTWDELKASMQLSNKQIQMFNEAEDARLFNGVGVSMRGPGGAIA 131 Query: 131 YVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 V + + L +++ A+ Q T + L +K+ +LT +E L + G Sbjct: 132 AVGAACSVKNGNLNKDILDAANLMSVQFYTCYWRLMEKKV-TLVHLTAKEQEILTWSAAG 190 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 YT +IA KL +SVHTV+ ++ + KL+A N A+++A+ I Sbjct: 191 YTKSQIAHKLCISVHTVDFHVRNCLAKLEAQNITHAVSRALNLSLI 236 >gi|182677912|ref|YP_001832058.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633795|gb|ACB94569.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 268 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 87/239 (36%), Gaps = 12/239 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 L + + S + L IQ + +N S I L Y + Sbjct: 34 TQLLDLEANLSERTLEEFAVFIQKYYELKNIFYIC-PSLPGRTITDPYI--LGTYSQEWI 90 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + D + LLPI W + + + + G+ PV Sbjct: 91 EHYRERNYVNLDPVINVGARSLLPIDWAKLPRSSP--KIQKFFGEATDFGVGRQGLTIPV 148 Query: 123 RLGFHKNGYV-IFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSS-AARNLT 175 R + + T++ E+I + + + E+ + +T Sbjct: 149 RGPTNGLWALFCMTTDDTQAEWQARHYELIRDMVHVAHFIQQRAFEMHHQDEGIDINTIT 208 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L + +G T E+I+ + +S TV A+L SA KL A+NRI A+AKAIR G I Sbjct: 209 KREIEALSWSAEGKTLEDISVLMRISQETVKAHLDSARYKLGALNRIHAVAKAIRAGLI 267 >gi|330870194|gb|EGH04903.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 280 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 11/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYGD 74 + L + ++ FA Y I+ + P L + + D D Sbjct: 34 DWERHLRKVMRQL---GFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDCYCCDGLLDID 90 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVI 133 L H L+P+ W + + G++ P+R V Sbjct: 91 PILKHCRQELVPMFWAQQGRRARG--RTRHFWQRREEHGLCHGLSIPLRYERLRGTLSVA 148 Query: 134 FTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 F E A+ +++ ++ + +LT RE CL A G Sbjct: 149 FDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECLYWASAGK 208 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI+ L S TV+ +L +A KL +V+R QA+ A G + Sbjct: 209 TSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 253 >gi|294142230|ref|YP_003558208.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293328699|dbj|BAJ03430.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 250 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 70/217 (32%), Gaps = 11/217 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNY-----DLDSGDIPNILIETYGDDFLF 78 +QN ++ AL T+ D + + G+I Y D + Sbjct: 39 LQNLLEVDGVALITLMIRPDHSI-NIERVVSSGFGFEAKSAEWGNIYQKNKFQYIDPIVS 97 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTSE 137 S W S+ + S + + G + I + Sbjct: 98 CSKSIRSSFNWTSVPSMMSLSESQLNFLEQAEEMGLKEGASIGSFSSRHIYKELNITSVS 157 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L +E + L ++ LT+RE L + +G +S EI Sbjct: 158 GRSLNSEQLATLELINTVSAQAMTRL----TNPVEELTKREREILAWSSEGKSSWEIGMI 213 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV +L + KL+ NR QAI AIR G I Sbjct: 214 CSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRQGLI 250 >gi|115265509|dbj|BAF32771.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv. actinidiae] gi|330965240|gb|EGH65500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 254 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +S+ + +S+L + L+ + + + + + D + L N Sbjct: 5 LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113 D + D + + P +W +T I + VR Sbjct: 65 ADWHALWCSQGYYQIDPVQHLAVARVSPFVWSYQPRAETVLQTFITDMHKPVVRYLHDSH 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKK-- 166 G+ P+ + + L A + + E + LF + Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS A LT RE CL + +G T+ EIA++L SV T+ +L SA KL A NR+QA+ Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQAVV 244 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 245 RAVHYRLL 252 >gi|159184428|ref|NP_353732.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139741|gb|AAK86517.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 201 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 73/198 (36%), Gaps = 1/198 (0%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 ++ + + + ++ + + + +P Sbjct: 3 LDLSSELASELSQYTVITSWPAELLQRYDEEGMLQNSRVMAQLKKSTIPFSVSMDFLVNG 62 Query: 98 IESSGQL-SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 E + L + FPV + G + F+ +L + E V Sbjct: 63 EEHIANKTVIGLFERFEMVNSVWFPVHDVTMRRGAISFSGNKAVLPTTRLAELLYISCHV 122 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 E+ + L+ERE CL G TS EIAE + LS HT+N YL AT KL Sbjct: 123 FARLSEIRRLDLRVPETLSEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKL 182 Query: 217 DAVNRIQAIAKAIRFGYI 234 D VNR QA+AKA+R G I Sbjct: 183 DTVNRTQAVAKALRVGLI 200 >gi|167035632|ref|YP_001670863.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166862120|gb|ABZ00528.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 235 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 66/222 (29%), Gaps = 10/222 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + + + +N + + + NY + + D Sbjct: 19 QKLFDIAVHLAQELGMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAA 78 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 +S P++W + G + H + Sbjct: 79 HMSHSSTTPVLWTDDLYRDAPQ-----FREAACQHGLRHGWTQSLHDLQHNESQISVARP 133 Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSE 192 + + + C+ + E ++ERE L+ + G T+ Sbjct: 134 AEKIDIVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPRMSERELEVLKWSAAGKTAA 193 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++A L LS TVN ++ S K +A N+ AIA A G+I Sbjct: 194 DVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235 >gi|148241069|ref|YP_001220570.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411445|gb|ABQ39898.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 243 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 17/233 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + ++ + + R FA + + + +Y Sbjct: 18 AHTEEDFRRVAERTAHALGFRWFAYFGHRANGPK--------LISSYPKSWTSHYFREGY 69 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D L + +W + + + G+ + ++ Sbjct: 70 DNIDPVLQEPRNTSRMFLWDGREARSAKSPKERRLFDDALSFKIRTGLTVRIPSSQNQFA 129 Query: 131 YVIFTSEFLML-------ANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSC 181 ++ L ++ ++E G Y + + LT+RE C Sbjct: 130 AFTLAADDRSLGLDRFIETSQDMLEMVGLTYHAHVSAARIGRTPPDGQQGSPLTQRERQC 189 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG T ++IAE LG+S V +L +A L A+ A+A A R G + Sbjct: 190 LAWISDGKTMQDIAELLGVSPRGVKFHLDNARRNLAALTLPHAVALAFRQGLL 242 >gi|159185350|ref|NP_355660.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140603|gb|AAK88445.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 245 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 71/236 (30%), Gaps = 13/236 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S + + F + ++ + + ++ Sbjct: 12 SQAGSADRVRSEFAKLIREY---GFEYFLVSRRMTGELASAGQILAEHLPDGWLEVYRAK 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D P W+ E + + G G AFPV Sbjct: 69 KYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGGYAFPVHGR 128 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------AARNLTERE 178 G V L + + A V L+L + +A LT RE Sbjct: 129 AGFIGAVFIGGPDRQLPSLHVELLDAATRAVFWRLLDLSGQAHGFSNAPDVSALELTRRE 188 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L DG TS EI +L +S HTV+ Y+ + A NR +A A R G + Sbjct: 189 MEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRHGLL 244 >gi|94496793|ref|ZP_01303368.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58] gi|94423806|gb|EAT08832.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58] Length = 256 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 89/238 (37%), Gaps = 7/238 (2%) Query: 1 MSENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDL 59 ++++ L +K +S +EL+ + + + I R+FAL + + ++ +Y Sbjct: 11 LADDLLRALRKVASREELAALMTCLASEIGFRHFALIHHD---PLAGERPDRVDIRDYPA 67 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 D + D + +W + + + S+ G GI Sbjct: 68 AIVDRLFDQGQLRRDPVIRGCLFSDGAFLWSDLDKIITFTRQDRHSLEFGAGHGLNEGIT 127 Query: 120 FPVRLGFHKNGYVIFTS-EFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTE 176 P L G F LA+ + A L A L Sbjct: 128 VPHVLLGECIGSCTFAGATDPQLASRYLGFAQITGIFAFQAARRMLLASPLIGPAPRLHP 187 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 R C+ LAG G++++EIA +LGL+ TV+ YL A DA +R + + A+ G I Sbjct: 188 RPRDCVVLAGRGFSNKEIARELGLTPRTVDGYLTEARRLFDAHDRAELVVSAVLAGEI 245 >gi|197344631|gb|ACH69663.1| LuxR family transcriptional regulator [uncultured bacterium] Length = 238 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 63/187 (33%), Gaps = 9/187 (4%) Query: 53 ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 Y + N Y D + H + PI W + +S + Sbjct: 55 ITSGYPEQYRHLYNDKGFIYRDPSVVHCQTRTDPIFWNESMYD----ASSYEIMEESQRF 110 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKR 167 G + PVR + + E+ + V+ + + Sbjct: 111 GLGHGFSVPVRESDKVVSMISLARDQPFTKQELEYIVPTAKVLATVMHVVAQKIIVPSMI 170 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L+ RE CL+ G ++ IA+ L +S TV YL A KL R+QA+A Sbjct: 171 ESRQPRLSPRELECLRWVAQGKSNTVIADILKISDDTVAFYLRGALRKLGVSTRMQAVAL 230 Query: 228 AIRFGYI 234 + FG I Sbjct: 231 CVTFGLI 237 >gi|209548400|ref|YP_002280317.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534156|gb|ACI54091.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 240 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 4/224 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ E+ + + + F + T+ + I + N+ + D + Sbjct: 18 NTHYEVFKYMKGLTQDLGMTAFLIMTLPTVDFAEIGATKI--ITNWPAEMVDYYDAHNLM 75 Query: 72 YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + P + E + L G FPV G Sbjct: 76 VDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIELFNRYGMEKGAYFPVHDAAGGRG 135 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + E + + + +L T E CL+L G Sbjct: 136 AMSISGSRNFSMIE-MAKLLFIATLIYDRLSQLTLNEKHKPIEFTRNELDCLRLTAGGRK 194 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ L L+ + VN ++GSA KL R QA+ A+R + Sbjct: 195 GAEIAKLLDLTENAVNNHIGSAIKKLGCTTRTQAVVSALRLNIL 238 >gi|319781695|ref|YP_004141171.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167583|gb|ADV11121.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 256 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 5/226 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++ + R I + A F L+ ++ + + + + C +Y + + Sbjct: 33 AVTIPDAVRRCRWIAVDMNASAFGLFFVSPSPERA--RLVPCFDSDYPGIAVAT-KFISG 89 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP--FAGIAFPVRLGFHK 128 G++ + H P W E G + L +GIAFPV + Sbjct: 90 ANGEEIVRHTRISTEPRWWTDDGVPATAELFGDFAWTERMAALVPGTSGIAFPVHADRGQ 149 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G V+F + L + + E H C+ + + + R +++RE CL+L +G Sbjct: 150 CGLVVFLGSEMTLQQDALYEVHARCFSLFAAVARIRPGDAGRMRAISKRELECLKLTANG 209 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEIA L LSVHT N YL +T KL+AVNR QA+AKA+R G I Sbjct: 210 NTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|194365353|ref|YP_002027963.1| LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348157|gb|ACF51280.1| transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 234 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 7/235 (2%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L +++ SL E+ L + + ++ + L+ ++ ++ D Sbjct: 4 LVQALLGLERADSLTEVGAILRSVAAPLGYDRVLVFATGTGLERDAQRVY-WIEGDWLGD 62 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D + H P W + Q+ + G L G+ Sbjct: 63 GSDTDLA-RYLHACPVNRHVLDSDAPFFWSKR--QGARGERYQVVKQPRGDGL--HGLQV 117 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERET 179 PV G + F + + + L + + L+ RE Sbjct: 118 PVFGTTGLEGAISFAGAAVDASARARLLLEAVATAAFRTARRLAEAPAELPVGALSARER 177 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G EIA LGLS TV +L A +L QA+ A R G I Sbjct: 178 EVLRWVAAGRRQAEIAATLGLSARTVENHLRRARQRLGVATTAQAVRAASRRGEI 232 >gi|307300496|ref|ZP_07580276.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318361|ref|ZP_07597796.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306896043|gb|EFN26794.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904662|gb|EFN35246.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 321 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 4/231 (1%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + + EL + + +R +F + + A + ++L L N+ + Sbjct: 94 EIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERL--VLSNWPAELVQQ 151 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + + + LP+ + E + +RL A + Sbjct: 152 YDAGETFQTSELVERLRQTKLPVTGGPELMEPAGKGAGKAAFIRLPPHAGMGH-FAVLLH 210 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + + + A + A Q+ F S A L+ RE CL+ Sbjct: 211 TTYGEPFVAVLSGTRDEPAGAERATLYLALLQLFECLERTFDAGSGAREKLSSREVECLR 270 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G +S+EIA LG+S +TV++Y SAT KLDAVNR+QAIA+A+R I Sbjct: 271 WAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 321 >gi|148549711|ref|YP_001269813.1| autoinducer-binding domain-containing protein [Pseudomonas putida F1] gi|148513769|gb|ABQ80629.1| transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 235 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 10/222 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + + + + +N + + + NY + + D Sbjct: 19 QKLFDIAVHLAQDLDMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAA 78 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 +S +P++W + + G + H + Sbjct: 79 NLSHSSTMPVLWTDDLYKEAPQ-----FRETACQHGLRHGWTQSLHDQQHNESQISVARP 133 Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSE 192 + + + C+ + E ++ERE L+ + G T+ Sbjct: 134 NGHIDMLELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPKMSERELEVLKWSAAGKTAA 193 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++A L LS TVN ++ S K +A N+ AIA A G+I Sbjct: 194 DVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235 >gi|124268980|ref|YP_001022984.1| LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261755|gb|ABM96749.1| putative LuxR-family transcriptional regulator [Methylibium petroleiphilum PM1] Length = 237 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 13/232 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ + E + R+ F + + +D P + N D Sbjct: 11 EARNRDEFRGEVVRFAKRL---GFETVSAITVVDHPVGDTEFVAIDNAPDAYKDAIEDPK 67 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + H +PIIW + T + + + GI + + ++ Sbjct: 68 AGQLDPVMQHCKRQSVPIIW---DQSTYVSAGQGSMWEAQARFGFRTGICLALHMPEGRH 124 Query: 130 GYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCL 182 + + ++ + + + ++ LT RE L Sbjct: 125 FVIGVDRDQALPKDRGEVTRLVADLQLFAVHAQDTAMRVLVPERLQLERPKLTPRELDSL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG T+ E+ +G+S T ++ +A KL N+ QA+ KA+R G + Sbjct: 185 RWTMDGKTAWEVGSIMGISERTAVLHINNAMHKLACTNKHQAVLKALRLGLL 236 >gi|148255499|ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] gi|146407672|gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] Length = 213 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 11/215 (5%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 + FA + D + + Y + D + + L Sbjct: 2 EQYGFPCFAYLSFAPRGD----EDDALAITTYPSAWVEQYRANRYDRIDPVIARSVATTL 57 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 P W + Q + + + + + G+ P+ K + + A E Sbjct: 58 PFAWSTDQFDA-LNNRQKWFLEEASEFEIRHGVTIPIHDRQGKVATLTLAACEARSAFEA 116 Query: 146 -----IIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLG 199 E H + ++ +S R LT+RE CLQ A G ++ + AE + Sbjct: 117 QISKYRHELHLIAIYLYARLRDVTPTPASPLRPCLTQRERICLQWAARGKSALDTAEIIN 176 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV + +A KL QA+AK + + I Sbjct: 177 VSRRTVVFHTQNAKRKLGVATVQQAVAKGLAYDII 211 >gi|325277395|ref|ZP_08143015.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097468|gb|EGB95694.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 242 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 9/229 (3%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L +++++L + L R+ F L+++ + D ++ ++ D I Sbjct: 14 LAVERATTLAGVQDALRPFAMRLGYDRFVLFSVRAVAD-ALIDRVYWVEGDWWGDGQAID 72 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL-PFAGIAFPVRL 124 H P W + G+ + G+ PV Sbjct: 73 -ARTYLTRCPVTRHVLEARAPFFWT-----KTCDEKGERYRVVRRPAGAGVHGLQLPVFG 126 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQ 183 G + + + E + L + +A A L+ RE L+ Sbjct: 127 PQGLEGAMSLGGARIDSSPEARLMLAMVATAAFHTARRLLQPPLAASATQLSAREREVLR 186 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +IA LGLS TV +L +A +L QAI A+ G Sbjct: 187 WTAAGSRQADIAATLGLSERTVENHLRAARRRLGVATTAQAIKIALHNG 235 >gi|149184297|ref|ZP_01862615.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831617|gb|EDL50050.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 211 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 3/210 (1%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 +R A F+ + ++ + +D D+ + D Sbjct: 2 DRFGADKFSYHFTPV-FGSQVSRETQVVARGFSMDWLDLYDSADFRQCDPIPDEVMRAGH 60 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM-LANE 144 I W+ + + + G P+ +++ Y F + E Sbjct: 61 TISWEEALDRAEHTPEVERFIAALREYGIANGFGVPLYGPDNRDAYAAFGFPAEVTPTEE 120 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I+ +L +L++RE L+L G + IA+ L +S T Sbjct: 121 QIVALTMVARTAHDRVCQLVTIEEGEI-SLSQRELEVLRLIAHGKSKPVIAQLLEISADT 179 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V Y+ KL +R+ A KA++ I Sbjct: 180 VGTYVKRLYAKLGVSDRVGATVKALKLKLI 209 >gi|103488004|ref|YP_617565.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978081|gb|ABF54232.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis RB2256] Length = 276 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 73/226 (32%), Gaps = 6/226 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++L L R+ +FAL P +HNY + Sbjct: 43 ADREEQLFAALTKAAGRMGFDHFALAFDRRGTGEPAS----ILVHNYPDAWAKVYVGFDL 98 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D L W+ + + + + + G P L +G Sbjct: 99 SGTDPIRRASERSLTGFEWRHVDRYIPLSRGDRQLLSVARDSGVGDGFTVPRHLPGEASG 158 Query: 131 YVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDG 188 F + +++ A I EL R LTER+ C+ + G Sbjct: 159 TCSFAVRPHADIPADMLHAAEILGAIAIASARELIGSSPLRPRPILTERQRECVLWSARG 218 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EIA+ LG+S TV +L A + R I A+ G I Sbjct: 219 KTAGEIADILGISEETVVRHLKMARERYSVHCRSMLILCALFDGLI 264 >gi|229588916|ref|YP_002871035.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360782|emb|CAY47640.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 235 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 11/224 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 + L I RI + L S P + + Y D D Sbjct: 16 DWERHLRKILRRIGYERYLLSLGPSTTHDPFNR----IMTTYPSDWLKRYKDENFIQVDP 71 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH-KNGYVIF 134 + H P+ W + + + G G++ P+R + V Sbjct: 72 IIRHCRHHFAPLFWGRARLKARG--CTNRFWKEREGYGLLRGVSIPLRFNEMAGSLNVAQ 129 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYT 190 + + G + +I LE +K +LT RE+ L+ G G T Sbjct: 130 CVSDTDELADDLNGPLGMLFMLIPFLLEGSQKHLKTVGEPPSSLTLRESEVLKWTGVGKT 189 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E++ LG S T+N ++ +A+ KL + +R QA+ A+ G I Sbjct: 190 TWEMSCILGCSERTINFHIANASRKLGSFSRRQAVGVALAQGLI 233 >gi|292487894|ref|YP_003530769.1| transcriptional activator protein expR [Erwinia amylovora CFBP1430] gi|292899116|ref|YP_003538485.1| LuxR family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291198964|emb|CBJ46075.1| LuxR-family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291553316|emb|CBA20361.1| Transcriptional activator protein ExpR [Erwinia amylovora CFBP1430] Length = 240 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +K S + ++ + ++ ++L+ P + NY D D Sbjct: 18 EKGSGIDHITRLIEQQLRALELDFYSLF---IRHPVPFTRPKTFLYSNYPQDWLDHYWRE 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L +S IW + S+G F G++ V Sbjct: 75 GFYQLDPVLEMCSSPGK--IW---LWDDKTISAGLCVFEHARNYGIFHGLSCSVMASNRS 129 Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQ 183 G + ++ L E ++ + + + + + + +ERE L+ Sbjct: 130 VGILSMSTANSQKLIKLTTETELKIQYVLELSMAALININDISMATTKLDFSERELEILK 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EI+ L +S +TVN + + +A N+ Q + A G I Sbjct: 190 WTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240 >gi|322835285|ref|YP_004215311.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321170486|gb|ADW76184.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 251 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 89/245 (36%), Gaps = 15/245 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLD 60 E+ ++ ++ +++ +L +R+ + + +L+ + + N D Sbjct: 7 ESAVSLRE-TTVDGAFDQLFAQTSRLGFDALIYDYTPVPRSLEGELITPSLLRMCNVPGD 65 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET-----VIESSGQLSVRLEGGLLPF 115 + D + P +W + + + + Sbjct: 66 MQRLWLENGYYQVDPVQHYALESCAPFVWSYQRPDNTSLQNRLSDLNKPVTHYMCDNNMP 125 Query: 116 AGIAFPVRLGFHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 +G P+ L G L + ++V+ E LF Sbjct: 126 SGATVPLHLPNGGFVTVTGIHTGAGHELDI-HDVLAELSLLALTFQECVFPLFDSSILTC 184 Query: 172 R--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L++RE CL A +G T++EIA KL S+ TV +L +A KL A NR+QA+ +A+ Sbjct: 185 RHVRLSKRERECLTWAAEGLTAKEIARKLNRSIATVTLHLNTAARKLGASNRVQAVVRAM 244 Query: 230 RFGYI 234 + + Sbjct: 245 HYRLL 249 >gi|182679885|ref|YP_001834031.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635768|gb|ACB96542.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 255 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 3/229 (1%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S L HL + + F +T+ +R L +Y D D Sbjct: 17 RRIDSADSLCALSHLTEEMCLSLGFPWFTLIRGKQLAKRDDRSILLTSYPQDWVDHVLKE 76 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D F + + + W I + + S ++ G P+RL + Sbjct: 77 KRHLDDPVHFAASRLVNGLSWNEIGQYVTLNSRQIETLESARRHGLNTGFTIPLRLDGFE 136 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLA 185 N + ++ +E + A L +L+ R+ C+ L Sbjct: 137 NAMFSMAKRKANVITSEERLLACLVGSVTFARAHALVTADAGIFTPVHLSPRQVDCVALL 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+ EIA +LG+S TV Y+ A R Q A+R GY+ Sbjct: 197 AKGYSDFEIARQLGISPETVREYITKARRSYGVKRRFQLAILAVRDGYL 245 >gi|222081950|ref|YP_002541315.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726629|gb|ACM29718.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 260 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 18/252 (7%) Query: 1 MSENTLTGKKSSSLQE-----LSPRLHLIQNR-IKARNFALYTINSALDFPRRQQLICEL 54 M + T ++ + + + +Q +A + + LD +L Sbjct: 1 MLDEIGTIRRKFTAHDTLDGRIDQAFEAMQQLGFEALVYDYTPVPFDLDGELMVPSFLKL 60 Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQLSVRLE 109 N D + D P W E + + R Sbjct: 61 RNISDDMLEYWFDRGYFRIDPVQQVALRTSAPFFWNYNVEADTAINRYLGENTEPVARYL 120 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELF 164 G+ PV + V +F A I + + LF Sbjct: 121 NERDMSTGVTVPVHMPRGDYATVTGIRFGANKDFERNALRYIADFGLLAHVFHETAYALF 180 Query: 165 K--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +RS LTERE CL+ + +G +++EI+ + SV TV +L SA KL A NR Sbjct: 181 DSSERSVGKMRLTERERECLRHSAEGLSAKEISRIIDRSVPTVVMHLNSAAKKLGAKNRT 240 Query: 223 QAIAKAIRFGYI 234 QA+ +A + + Sbjct: 241 QAVVRATHYRLL 252 >gi|325294100|ref|YP_004279964.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061953|gb|ADY65644.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 258 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 73/235 (31%), Gaps = 13/235 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ + + + F + ++ + + ++ Sbjct: 26 QAGNADRVRSEFVTLIREY---GFEYFLVSRRMTGELASTGQILAQHLPEGWIEVYRAKK 82 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D P W+ E + + G G AFPV Sbjct: 83 YNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRANVFFHDAGRYGLQGGYAFPVHGRA 142 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAARNLTERET 179 G V E L + + A V L+L + + +A LT RE Sbjct: 143 GFIGAVFLGGEDRQLPSLHVELLDAATRAVFWRLLDLSGQVHNLNNAPNVSALELTRREM 202 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L DG TS EI +L +S HTV+ Y+ + A NR +A A R G + Sbjct: 203 EVLTLMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRNGLL 257 >gi|37223239|gb|AAQ90220.1| LuxR [Aliivibrio fischeri] gi|37223242|gb|AAQ90222.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 11/212 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +++ L + I + Y + + + NY + D Sbjct: 26 DINQCLSEMAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLKYDP 82 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + S PI W + E+ I+ +R G +FP+ + G + F Sbjct: 83 VVDYSKSHHSPINWN-VFEKKSIKKESPNVIREAQESGLITGFSFPIHTANNGFGMLSFA 141 Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + + H ++ ++ ++ + LT+RE CL A +G Sbjct: 142 HSDKDIYTDSLF-LHASTNVPLMLSSLVDNYQKINTTHKKSDSILTKREKECLAWASEGK 200 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ +I++ LG S TV +L + +KL+ NR Sbjct: 201 STWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|114704741|ref|ZP_01437649.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] gi|114539526|gb|EAU42646.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] Length = 226 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 77/220 (35%), Gaps = 2/220 (0%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +L L + N A + S + + + + N+ Sbjct: 8 ADLEAALAMAGNTYGFTYAAALALPSTDEQGLQTRY--LMGNWSHGFQRSYEAAELHRHK 65 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + ++ +P W + + RL G+ PV G + F Sbjct: 66 VVVATLSTDPMPFEWDIDTLYGISDPKPSKGARLVAEAGWSEGVLLPVHGMTAMCGALSF 125 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + VI E + + + LT RE CL+LA G TS EI Sbjct: 126 AGPNALPSRTVIYEMQSFAFVFFGMLAAVRFDENRRNNPLTPRERDCLRLAMLGKTSSEI 185 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS +T++ YL +A KLDA NR +A A + GY+ Sbjct: 186 GIVLSLSEYTISQYLTAAQRKLDASNRTHTVAMAAQLGYL 225 >gi|70732607|ref|YP_262370.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf-5] gi|68346906|gb|AAY94512.1| autoinducer-binding transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 252 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 71/237 (29%), Gaps = 16/237 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILIE 70 +SL E + + + D + + N D ++ Sbjct: 16 NSLHERMTGTMTLASELGFDALVYDYSPVPFDQAGELIIPSAMVCNTPRDWLELWCDQGY 75 Query: 71 TYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 + D P IW + G+ P+ L Sbjct: 76 YHIDPVQQVALDSSSPFIWSYKPEAETVLRQALGQQHAPVSSYLHHHQMAHGMTVPIHLP 135 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTER 177 T A + + L + LT R Sbjct: 136 RGGFA--SLTGLRSGNATVALQDLQQVQGHFTLLAHALQEHLYPQLSKCVRSYPVDLTRR 193 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E CL+ A +G TS EIAE+L S T+N +L SA KL A NR+QA+ +A+ + + Sbjct: 194 ERECLKWAAEGMTSGEIAERLQRSQATINLHLTSAMHKLGARNRVQAVVRAVHYRLL 250 >gi|170736657|ref|YP_001777917.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818845|gb|ACA93427.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 321 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 69/224 (30%), Gaps = 6/224 (2%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILIETY 72 L L + + FA+ ++ R + L Y Sbjct: 99 LSSLLKLFGDVSASLGFPRFAISRVSRRHAGNGRAMSVETLCARYPDHWVAHYAQRDYGP 158 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + P W I + Q + +G++ P+R V Sbjct: 159 VDPVHRMAFARATPYRWADI---RGLNRIEQRVLGEARDAGLTSGVSIPLREANGDILLV 215 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYT 190 S + EV + + L + R A L+ R+ CL G + Sbjct: 216 NLASPSPEIKTEVHMRLASLIGALFHQELHRLMKPHRPEPALELSPRQQECLAWVARGKS 275 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S IA +G+S HTV+ ++ A L +R A A+ G I Sbjct: 276 SWAIAAIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 319 >gi|149184172|ref|ZP_01862490.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831492|gb|EDL49925.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 217 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 61/219 (27%), Gaps = 7/219 (3%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L FA + ++ + + + D F Sbjct: 2 FEILRRYFAEFGFEAFAYMVPSKTEPG----RIEMDAFGFPDAWAETYRSAEMDTIDPFP 57 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS- 136 + P+ I + + G+ P G Sbjct: 58 RYVARSGRPLRLTEISAQAQSKEQKAFL-EQAREHGITDGLIIPTFGIRQNLGVFAIGQV 116 Query: 137 -EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + +L + T L + NL+ RET L G T+ EIA Sbjct: 117 KDLKVLERASVFALQAVAQAAHTQMEMLASRADGLRTNLSNRETEILHWIALGKTNSEIA 176 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+ TV Y+ KLD +R A KAIR+G I Sbjct: 177 TILGIGGPTVATYIKRVFDKLDVKDRSSAAVKAIRWGII 215 >gi|271501434|ref|YP_003334459.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270344989|gb|ACZ77754.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 77/236 (32%), Gaps = 12/236 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ L+E L + + + +L+ + E+ N D + Sbjct: 13 ATRLEEAFAGLFARTQALGFDAVIYDYTPVPRSLEGALITPSLLEMRNVPDDMRRLWCER 72 Query: 69 IETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 D P +W ++ Q G P+ Sbjct: 73 GYYQVDPVQHFALESCAPFVWSYQRPDRSALHGRLDEHAQEVTHYMRDNNMPCGATVPLH 132 Query: 124 LGFHKNGYVIFTSEFLMLANE---VIIEAHGACYQVITDFLELFKKRSSAAR--NLTERE 178 L + + + + ++ LF R L+ RE Sbjct: 133 LPNGGFVTLTGIVTDQREERDISETLAQLTFLAHRFQESAFPLFDASMLTCRHVKLSNRE 192 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T++EIA KL SV TV +L +A KL A NR+QA+ +A+ + + Sbjct: 193 RECLAWSAEGLTAKEIARKLHRSVATVTLHLNTAAKKLGATNRVQAVVRALHYRLL 248 >gi|58533128|gb|AAW78919.1| ExpR [Erwinia amylovora] Length = 240 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +K S ++ + ++ ++L+ P + NY D D Sbjct: 18 EKGSGTDHITRLIEQQLRELELDFYSLF---IRHPVPFTRPKTFLYSNYPQDWLDHYWRE 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L +S IW + S+G F G++ V Sbjct: 75 GFYQLDPVLEMCSSPGK--IW---LWDDKTISAGLCVFEHARNYGIFHGLSCSVMASNRS 129 Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQ 183 G + ++ L E ++ + + + + + + +ERE L+ Sbjct: 130 VGILSMSTANSQKLIKLTTETELKIQYVLELSMAALININDISMATTKLDFSERELEILK 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EI+ L +S +TVN + + +A N+ Q + A G I Sbjct: 190 WTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAVGLI 240 >gi|312172015|emb|CBX80272.1| Transcriptional activator protein ExpR [Erwinia amylovora ATCC BAA-2158] Length = 240 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 15/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +K S + ++ + ++ ++L+ P + NY D D Sbjct: 18 EKGSGIDHITRLIEQQLRELELDFYSLF---IRHPVPFTRPKTFLYSNYPQDWLDHYWRE 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L +S IW + S+G F G++ V Sbjct: 75 GFYQLDPVLEMCSSPGK--IW---LWDDKTISAGLCVFEHARNYGIFHGLSCSVMASNRS 129 Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARNL--TERETSCL 182 G + ++ L E ++ + + + S A L +ERE L Sbjct: 130 VGILSMSTANSQKLIKLTTETELKIQYVLELSMAALININ-DISMATTKLDSSERELEIL 188 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G TS EI+ L +S +TVN + + +A N+ Q + A G I Sbjct: 189 KWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240 >gi|37223211|gb|AAQ90202.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 79/212 (37%), Gaps = 11/212 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +++ L + I + Y + + + NY + D Sbjct: 26 DINQCLSEMAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDP 82 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + S PI W + E+ I+ ++ G +FP+ + G + F Sbjct: 83 VVDYSKSHHSPINWN-VFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFA 141 Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + + H ++ ++ ++ R + LT+RE CL A +G Sbjct: 142 HSDKDIYTDSLF-LHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGK 200 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ +I++ LG S TV +L + +KL+ NR Sbjct: 201 STWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|18250686|emb|CAD20930.1| RaiR protein [Rhizobium leguminosarum] Length = 265 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 8/195 (4%) Query: 46 RRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS 105 + Y + D + G LP+ W + + ++ + Sbjct: 73 ATASNPLLMLTYPPEWVKQYLERDYFSIDPVVRLGRRGFLPVEWSASKWDSGQ--AYGFF 130 Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDF 160 + G+ PVR + TS + + + + + Sbjct: 131 KEAMAFGVGRQGVTLPVRGPHGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRA 190 Query: 161 LELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + L ++ + L+ RE CL++ +G +++I +L +SV V YL SA KL Sbjct: 191 MVLSGMRKITDFPQLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVA 250 Query: 220 NRIQAIAKAIRFGYI 234 +A+AKA I Sbjct: 251 TTSEAVAKATALELI 265 >gi|325168564|ref|YP_004280354.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064287|gb|ADY67976.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 240 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 7/232 (3%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 + L + + Q + + + F L++ ++A + P +++ ++ + GD Sbjct: 13 SVLAIDAAETFQTIQTEVRSLVAPFGYDRFVLFSASAAREEPI-ERIYWIEGDWFGN-GD 70 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 H P W E ++ G + G+ PV Sbjct: 71 PVTEETYIRRCAITRHILGAREPFFWTKTFREN--GELYRVVNLPRGPGI--HGLQVPVF 126 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCL 182 G + + + +L + ++A L++RE L Sbjct: 127 GPSGLEGAMSLGGTQINASPTTKWILTLLAVAAFYSARKLIEAPVASAIAVLSDREREVL 186 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIA LGLS T+ +L +L QAI AIR G I Sbjct: 187 TWTAAGRRQFEIAATLGLSERTIENHLRRIRHRLGVSTTAQAIRIAIRNGEI 238 >gi|37223214|gb|AAQ90204.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 11/212 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +++ L + I + Y + I + NY + D Sbjct: 26 DINQCLSEMAKII---HCDYYLFAIIYPHSIIRPDISIIDNYPEKWRKYYDEAGLLEYDP 82 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + S PI W + E+ I+ ++ G +FP+ + G + F Sbjct: 83 VVNYSKSHHSPINWN-VFEKKSIKKESPNVIKEAQASGLITGFSFPIHTANNGFGMLSFA 141 Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + + H ++ + ++ + LT+RET CL A +G Sbjct: 142 HSDKDIYTDSLF-LHANTNVPLMLPSLVDSYQKINTTHKKSDSILTKRETECLAWASEGK 200 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ +I++ LG S TV +L + +KL+ NR Sbjct: 201 STWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|330807408|ref|YP_004351870.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375516|gb|AEA66866.1| Putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 13/236 (5%) Query: 12 SSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 SL E + + + + D + +L N D + Sbjct: 16 RSLDEQMDNTLGMVQALGFEALVYDYSPVPLDHDGALITPTVLKLRNTPRDWHSLWCEEG 75 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEET-----VIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D + + P +W E I S V G+ P+ L Sbjct: 76 YYQIDPVQHLAINAISPFVWSYRPEADTVLQPFIGQSHAPVVSYLQDSRMTCGVTVPMHL 135 Query: 125 GFHKNGYVIFTSEFLMLA-----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 + + + + + + + L K + A LT+RE Sbjct: 136 PKGGFATLTGLRADTKGSTLQDVRQTLGDFSLISHALQEAAFPLLGKEARACPVRLTKRE 195 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL+LA +G T+ +IA +L S+ T+ +L SA KL A NR+QA+ +A+ + + Sbjct: 196 RECLRLAAEGLTAADIARQLNRSLATITLHLTSAMHKLGARNRVQAVVRAVHYRLL 251 >gi|206562110|ref|YP_002232873.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038150|emb|CAR54100.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 262 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 70/224 (31%), Gaps = 6/224 (2%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILIETY 72 L L + + FA+ ++ R + L Y Sbjct: 40 LSSLLKLFGDVSASLGFPRFAISRVSRRHTGNGRAMAVETLCARYPDHWVAHYAQRDYGP 99 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + P W I + Q + +G++ P+R V Sbjct: 100 VDPVHRMAFARATPYRWADI---RGLNRIEQRVLGEARDAGLTSGVSIPLRETNGDILLV 156 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYT 190 S + EV + + + L + R A L+ R+ CL G + Sbjct: 157 NLASPSPEIKTEVHMRLASSIGALFHQELHRLMKPHRPEPALELSPRQQECLAWVARGKS 216 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S IA +G+S HTV+ ++ A L +R A A+ G I Sbjct: 217 SWAIASIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 260 >gi|222066054|emb|CAX21482.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 10/214 (4%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 + ++ +N + + + NY + + D + Sbjct: 27 HLVQDLGMEHLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAARLSHGQTT 86 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 P++W + G + H V +A Sbjct: 87 PVLWTDELYCEAPQ-----FREAACQHGLRHGWTQSLHDLQHNESQVSVARPAGQIAINE 141 Query: 146 IIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + E C+ + + E ++ERE L+ + G T+ ++A L L Sbjct: 142 LYEKAASVQWLCHTLHSVLCEHHLDALCPPQPKMSERELEVLRWSAAGKTAADVASILSL 201 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TVN ++ S K +A N+ AIA A G+I Sbjct: 202 SQSTVNFHIRSVITKTNASNKAGAIAIAALRGWI 235 >gi|86358518|ref|YP_470410.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282620|gb|ABC91683.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] Length = 260 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + + Y + Sbjct: 34 EQIKAATNVDAAIRILQAEYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 90 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 91 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 147 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ + + + + L+ RE CL Sbjct: 148 RALLSLNARIPADEWSELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPTLSPREIECLH 207 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 208 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258 >gi|37223202|gb|AAQ90196.1| LuxR [Vibrio fischeri ES114] Length = 230 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 11/212 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +++ L I I + Y + + + NY + D Sbjct: 24 DINQCLSEIAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDP 80 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + S PI W + E+ I+ ++ G +FP+ + G + F Sbjct: 81 VVDYSKSHHSPINWN-VFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFA 139 Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + + H ++ ++ ++ R + LT+RE CL A +G Sbjct: 140 HSDKDIYTDSLF-LHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGK 198 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ +I++ LG S TV +L + +KL+ NR Sbjct: 199 STWDISKILGCSERTVTFHLTNTQMKLNTTNR 230 >gi|90423532|ref|YP_531902.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105546|gb|ABD87583.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 242 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 77/233 (33%), Gaps = 11/233 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + +++ +L L I + + + ++ R LI Y + + Sbjct: 13 IRVAATADDLHHVLRHICEAYQLAHAVFHATDTPAVRAERPLLIL---TYPAEWVENYTR 69 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + G L + W +I ++T + + + G+ VR Sbjct: 70 RDYFKIDPVVAIGRVGFLSLDWSTIDQKTASSAK--FFREADEFGVGRHGLTTTVRGPSG 127 Query: 128 KNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSC 181 + TS I E + R L++RE C Sbjct: 128 ERSLFTVTSNANAAQWTRQRDACIHEFQIIANHFHQRAMISTGLRGGDGPLPLSKREKQC 187 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L G+ ++IA L LS + YL SA KL A QAIA A+ I Sbjct: 188 IELLAKGFLPKQIAALLDLSESAIRLYLCSARRKLQASTTSQAIAIALSLELI 240 >gi|13990973|dbj|BAB47256.1| LuxR family quorum-sensing transcription factor [Agrobacterium tumefaciens] Length = 269 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + L + FA I ++Y + + + D Sbjct: 56 IKSALKTFAHACGFERFAY--------LQTEGSEIRTFNSYPEEWQGVYLESHYSRIDPV 107 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 ++ + + W + + + +S + +G+ PV F + F S Sbjct: 108 VWEAKTRMEIFPWTADEWPSRGKSELRQFRDQAINHGIRSGVTIPVEGSFGSTMMLTFAS 167 Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + A V+ L R L+ RE CL+ A G T+ Sbjct: 168 SAPAADVSKLQDGQKAVRAVLAIHYRLKMLAATTIVPPKRLLSPREAMCLKWAAKGKTAP 227 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E A G++ TV YL A KL+A +A A G + Sbjct: 228 ETAILTGINPRTVQHYLDKAREKLEAATVPHLVAIAKDHGLL 269 >gi|307130193|ref|YP_003882209.1| transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] gi|306527722|gb|ADM97652.1| Transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] Length = 326 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 78/236 (33%), Gaps = 15/236 (6%) Query: 14 LQELSPRLHLIQNRIKARNFA-----LYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 P + + ++ F + +L+ + N D + Sbjct: 91 AAAFEPAFEQLYDEVRRLGFDALIYDYTPVPRSLEGELITPSLLRTRNVPDDMVSLWCQS 150 Query: 69 IETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 D H P W + V+ + G+ P+ Sbjct: 151 GYYQVDPVQIHALDSCAPFTWSYCRPENTSLRRVLNEQHRPVSHYMQNHNMRCGVTVPLH 210 Query: 124 LGFHKNGYVIFTSEFLMLANE---VIIEAHGACYQVITDFLELFKKR--SSAARNLTERE 178 L V L NE V+ + LF + +L+ RE Sbjct: 211 LPKGGFVTVTAIHTGLDTDNEIETVLARIGLLAHTFQEHVFPLFDEAWYHCRHVHLSPRE 270 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T++EIA KL S+ TVN +L +A KL A NR+QA+ +A+ + + Sbjct: 271 QECLAWSAEGLTAKEIARKLHRSLATVNLHLNNAARKLGASNRVQAVVRAMHYRLL 326 >gi|71492988|gb|AAZ32754.1| MrtR [Mesorhizobium tianshanense] Length = 272 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + A + Y + Sbjct: 46 EQIKAAANVDAAIRILQAEYGLDFVTYH---LAQTIAAKIDSPFVRTTYPDAWVSRYLLN 102 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 103 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 159 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ + + + + L+ RE CL Sbjct: 160 RALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 219 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 220 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 270 >gi|167736311|dbj|BAG07412.1| LuxR-like protein [Gluconacetobacter polyoxogenes] Length = 236 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 9/229 (3%) Query: 7 TGKKSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + +++ +L L + + ++ L+ + Y + + Sbjct: 14 DLENAATKHDLLSIYLDAVLSVGN-----VHVTIVELNRIEDPKENFIHVGYPTEWVNFY 68 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + P W I+ E +R G+ PV Sbjct: 69 IENNYIVSDPIIKKSRFMSHPYFWHEIRNINKSEKK---IIRDVSEFGIKKGLTIPVHTH 125 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + E+ + I + +L + + LT RE CL+ Sbjct: 126 DRLIYAICFAFTDKNVDQEIELYLRALSNFFIAGYKKLDEPTDMSPPILTPREKECLRWT 185 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S E +G+S TVN ++ +A +KL NRI + +AI G I Sbjct: 186 AKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234 >gi|260466633|ref|ZP_05812821.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029639|gb|EEW30927.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 256 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 5/226 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++ + R I I A F L+ ++ + + + + C +Y + + Sbjct: 33 AVTIPDAVRRCRWISVDINASAFGLFFVSPSPERA--RLVPCFDSDYPGVAVAT-KFISA 89 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV--RLEGGLLPFAGIAFPVRLGFHK 128 G++ + H + P W + E G+L+ ++ +GIA PV + Sbjct: 90 ANGEEIVRHTRNSTEPRWWADDGVAAMAEMFGKLAWTEQMAPLAPGTSGIALPVHADRGQ 149 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G V+F + L + + E H C+ + + + R +++RE CL+L +G Sbjct: 150 CGLVVFLGSEIALPQDTLYEIHARCFSLFAAVARILPSDAGRTRAISKRELECLKLTANG 209 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEIA L LSVHT N YL +T KL+AVNR QA+AKA+R G I Sbjct: 210 NTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|241205631|ref|YP_002976727.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859521|gb|ACS57188.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + A + Y + Sbjct: 15 EQIKAAANVDAAIRILQTEYGLDFVTYH---LAQTIAAKIDSPFVRTTYPDAWVSRYLLN 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 72 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ + + + + +L+ RE CL Sbjct: 129 RALLSLNARIPAEEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPSLSPREIECLH 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239 >gi|37223223|gb|AAQ90210.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 11/216 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +G +S +I++ LG S TV +L +A +KL+ NR Sbjct: 197 CEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|190404427|ref|YP_001961058.1| rcorf83 [Agrobacterium rhizogenes] gi|158322223|gb|ABW33640.1| rcorf83 [Agrobacterium rhizogenes] Length = 224 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 70/216 (32%), Gaps = 9/216 (4%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 +++ + + F + R ++Y DI + D + Sbjct: 14 ALKSFVNSHGFERFAYLQTEGLEIR-----TFNSYPEGWQDIYLGGQYSRIDPVITEAKR 68 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 + W + S + +G+ PV F + F S + Sbjct: 69 RMEMFYWTADDWPARGTSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMMLTFASSEKKVE 128 Query: 143 NEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +++A A V+ L + R L+ RE CL A G ++ E A Sbjct: 129 KAKLLDAQKAVRTVLAIHYRLKIIASTTIIAPKRLLSPREAMCLMWAAKGKSAPETAMLT 188 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++ TV YL A KLDA +A A G + Sbjct: 189 GINARTVQHYLDKAREKLDAATVPHLVAIAKDHGLV 224 >gi|218679157|ref|ZP_03527054.1| LuxR family transcriptional regulator [Rhizobium etli CIAT 894] Length = 265 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 78/233 (33%), Gaps = 14/233 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + I +A + + LD + +L N D D Sbjct: 22 IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYWFNHGYFRI 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P W + + R G+ PV + Sbjct: 80 DPVQQVALRSTAPFFWNYDTDADTLIKRFMSDDTAPVARYLNERDMSTGVTVPVHMPRGD 139 Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSC 181 V E I + + + LF K + + LTERE C Sbjct: 140 YATVTGIRFGRNDDFERYALRYIADFNLLAHVFHETAYSLFDKTAKSVGTVRLTEREREC 199 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + +GY+++EI+ +G SV TV +L +A KL A NR QA+ +A + + Sbjct: 200 LRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 252 >gi|148553102|ref|YP_001260684.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498292|gb|ABQ66546.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 254 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 72/229 (31%), Gaps = 6/229 (2%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +LS + + R FAL D + + L NY D Sbjct: 23 EAAESSAQLSEVIAGAIQQFGFRWFALV---DDGDLYKHRSGCMMLTNYPSSWVDEVISA 79 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + W I + + + G P R+ + Sbjct: 80 RLYRDDPVHAASIRSPTGLCWDRIPDVIAPTRAQLSVLERGRAHGLTTGYTVPFRIPGER 139 Query: 129 NGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLA 185 + I A L K R+ A LT R+ CL+L Sbjct: 140 GAFFSIARPKDRSFTYSEAISAQLLGGIAFEAGRALVKGRAVKAHGAPLTPRQIDCLRLI 199 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T E+ + LGLS T++ Y+ +A + R Q + A R GY+ Sbjct: 200 AAGKTEWEMGKILGLSPSTIHEYVEAARRRYGVKTRSQLVLAAARDGYV 248 >gi|149186879|ref|ZP_01865189.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148829546|gb|EDL47987.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 226 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 6/209 (2%) Query: 28 IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI 87 + + FA + ++ + Y + D F H + Sbjct: 20 LGFQGFAYMVPSRDSPL----TMVYKSRGYPEKFIETYQREKLYLIDPFPAHVTRHKSTL 75 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG--YVIFTSEFLMLANEV 145 I ++ + + + + G+ P + + ++F ++ N+ Sbjct: 76 RISEIAQQAKLSRAETDYIDRMKKMGITDGLIIPTFGMDLRIVKFVLGQVTDFSVIENDN 135 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E EL ++ R L RE L G T+ EIA LG++ TV Sbjct: 136 LFEFTATLQMAHRRLDELARQDEPIRRRLPRREVEILHWIAKGKTNAEIAAILGVAAPTV 195 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KLD +R K R+G I Sbjct: 196 ATHIARMFQKLDVNDRAALAVKGFRYGII 224 >gi|18699286|gb|AAL78509.1|AF456804_1 probable transcriptional activator TraR [Sinorhizobium meliloti] gi|38374154|gb|AAR19282.1| TraR [Sinorhizobium meliloti] Length = 234 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 67/222 (30%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + L + FA + + ++Y I + D Sbjct: 21 IKSALRNFAHACGYDRFAY--------LQKEAFQVKTFNSYPGSWEGIYLGSDYSSIDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + W + S + G+ PV + + F S Sbjct: 73 VTEAKRRGDVFFWTADDWPARGSSPLRRFRDEAIDHGIRCGVTMPVEGSYGSAMMLTFAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192 + ++ A V+T L K + + L+ RE CL A G T+ Sbjct: 133 PERNIDISGALDPKKAIQMVMTVHYRLKMIAAKTAVNPKQMLSPREMLCLVWATRGKTAP 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E A G++ TV YL A KL A + Q +A A G + Sbjct: 193 ETAMLTGINPRTVQHYLDKARAKLGAESVPQLVAIAKDRGLV 234 >gi|37223217|gb|AAQ90206.1| LuxR [Aliivibrio fischeri] Length = 233 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 81/212 (38%), Gaps = 11/212 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +++ L + + + Y + + I L NY + + D Sbjct: 26 DINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWREYYDDANLIKYDP 82 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + NS PI W I E + ++ G +FP+ + G + F Sbjct: 83 IVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGMLSFA 141 Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + H ++ ++ ++ + + +LT+RE CL A +G Sbjct: 142 HSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEGK 200 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +S +I++ LG S TV +L +A +KL+ NR Sbjct: 201 SSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|163745782|ref|ZP_02153141.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] gi|161380527|gb|EDQ04937.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] Length = 253 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 4/208 (1%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88 + + ++ + + +LP+ Sbjct: 40 GIDLVSYHGDSTGAPAILYRYEATGAET--PRWHSRFLDVETLRESPVEAIARQQVLPVY 97 Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEVI 146 W ++ +E + + + + G P GI+ V + V F ++ L++ + Sbjct: 98 WSAVSKEARLTRAERAYMDRLLGRYPNDGISLKVHGPGGDSAVVGLGFAAKQARLSSIAL 157 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A + L + +S L+ RE L+ G ++ IAE LG+S HTV+ Sbjct: 158 YKLLCAAQIAHLRYCALAESQSPRDFGLSPREVEVLEWIATGKSNGVIAEILGISPHTVD 217 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + KLD +R A + + G + Sbjct: 218 TIVRRIFAKLDVNDRTTAAIRGLGAGLL 245 >gi|10954765|ref|NP_066700.1| hypothetical protein pRi1724_p120 [Agrobacterium rhizogenes] gi|10567429|dbj|BAB16238.1| riorf119 [Agrobacterium rhizogenes] Length = 224 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 68/222 (30%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + L N FA I ++Y + DI + D Sbjct: 11 IKSALKSFANSHGFERFAY--------LQTEALEIRTFNSYPEEWQDIYLGSHYSRIDPV 62 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + W + S + +G+ PV F + F S Sbjct: 63 ITEAKRRMETFSWTADDWPARGSSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMMLTFAS 122 Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192 N +++ A V+ L + R L+ RE CL A G ++ Sbjct: 123 SEKKAENGKVLDGQKATRAVLAIHYRLKIIAATTIVAPKRLLSPREAMCLMWAAKGKSAP 182 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E A G++ TV YL A KLDA +A A G + Sbjct: 183 ETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAKDHGLV 224 >gi|197103145|ref|YP_002128523.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] gi|196480421|gb|ACG79948.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] Length = 252 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 69/228 (30%), Gaps = 10/228 (4%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIP 65 ++ S+ EL + F + + P R++ + Sbjct: 18 DAQQVESIPELEAVFAKTLEPLGVDVF----VGVQIADPLRERHVEVTFGRTHAAWQAHY 73 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-ESSGQLSVRLEGGLLPFAGIAFPVRL 124 D + P+ W + + + G+ P+ Sbjct: 74 EAQGHAARDPIVREMLRSTEPLFWSDLPARRGALKPDEARVMEEARSFGLNEGLMTPLHH 133 Query: 125 GFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERETS 180 V+ E L + H + + L+ R+ Sbjct: 134 VDGSVSAVLMMGERLASDAPDTRAALHLLSIYYGSLARKLRQRNDGGEPQKAKLSARQIE 193 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 CL+ A +G +S I + L LS TV+ +L SA KL R+QA+A+A Sbjct: 194 CLRWAREGKSSYVIGQILSLSARTVDEHLASACRKLGVHTRMQAVAQA 241 >gi|229526554|ref|ZP_04415958.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis VL426] gi|229336712|gb|EEO01730.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis VL426] Length = 250 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++S S + + + ++ +S LD +++ ++ D G+ + Sbjct: 23 QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 80 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 H P W + + V G G+ P+ Sbjct: 81 AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 136 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185 G V + + + E L + + L++RE L L Sbjct: 137 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +IA LG+S T+ +L +A +KL + I AI+ G Sbjct: 197 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243 >gi|116253119|ref|YP_768957.1| AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257767|emb|CAK08865.1| putative AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 241 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + A + Y + Sbjct: 15 EQIKAAANVDAAIRILQAEYGLDFVTYH---LAQTIAAKIDSPFVRTTYPDAWVSRYLLN 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 72 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ + + + + +L+ RE CL Sbjct: 129 RALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPSLSPREIECLH 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239 >gi|217976294|ref|YP_002360441.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217501670|gb|ACK49079.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 244 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 18/240 (7%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L + S + L + I++ N A + Y + + Sbjct: 12 LLQLETDLSDETLDGFIEYIRHHYGLANIAYLCPSFRGR---SVADPFMALTYREEWVEH 68 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D +LP+ W + ++ + G+ PVR Sbjct: 69 YKDEGYGLIDPVHNIGARSVLPLDWARLPRAEK--KVQRMFGEAADAGVGRQGLTIPVRG 126 Query: 125 GFHKNGYVI----------FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 + + + L +++ AH + + + +A Sbjct: 127 PTNGLWALFSVTSDEADTEWARRRFELTKDMVHIAHYVHQRAYKLHAKEDEIDLNAI--- 183 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+ + +G + +I+ + +SV TV A+L SA KL A+NR+ A+ KAIR G I Sbjct: 184 TKREIEALEWSAEGKSLADISILMRISVETVKAHLDSARYKLCALNRVHAVTKAIRAGLI 243 >gi|37223220|gb|AAQ90208.1| LuxR [Aliivibrio fischeri] gi|37223236|gb|AAQ90218.1| LuxR [Aliivibrio fischeri] gi|37223247|gb|AAQ90225.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 11/216 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +G +S +I++ LG S TV +L +A +KL+ NR Sbjct: 197 CEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|15601642|ref|NP_233273.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121726448|ref|ZP_01679712.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147671672|ref|YP_001215191.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153802474|ref|ZP_01957060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|153819712|ref|ZP_01972379.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153822367|ref|ZP_01975034.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|227812454|ref|YP_002812464.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|229510178|ref|ZP_04399658.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|229517693|ref|ZP_04407138.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|254850052|ref|ZP_05239402.1| transcriptional regulator [Vibrio cholerae MO10] gi|298499668|ref|ZP_07009474.1| LuxR family transcriptional regulatory, chaperone HchA-associated [Vibrio cholerae MAK 757] gi|9658321|gb|AAF96785.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121631043|gb|EAX63420.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|124121993|gb|EAY40736.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|126509730|gb|EAZ72324.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126520130|gb|EAZ77353.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146314055|gb|ABQ18595.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|227011596|gb|ACP07807.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227015536|gb|ACP11745.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|229345729|gb|EEO10702.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|229352623|gb|EEO17563.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|254845757|gb|EET24171.1| transcriptional regulator [Vibrio cholerae MO10] gi|297541649|gb|EFH77700.1| LuxR family transcriptional regulatory, chaperone HchA-associated [Vibrio cholerae MAK 757] Length = 253 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++S S + + + ++ +S LD +++ ++ D G+ + Sbjct: 26 QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 83 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 H P W + + V G G+ P+ Sbjct: 84 AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 139 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185 G V + + + E L + + L++RE L L Sbjct: 140 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 199 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +IA LG+S T+ +L +A +KL + I AI+ G Sbjct: 200 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246 >gi|167736315|dbj|BAG07414.1| AHL-dependent transcriptional regulator [Gluconacetobacter intermedius] Length = 236 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 76/229 (33%), Gaps = 9/229 (3%) Query: 7 TGKKSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + +++ +L L + + ++ L+ + Y + + Sbjct: 14 DLENAATKHDLLSIYLDAVLSVGN-----VHVTIVELNRIEDPKENFIHVGYPTEWVNFY 68 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + P W I+ E +R G+ PV Sbjct: 69 IENNYIVSDPIIKKSRFMSHPYFWHEIKNINKAEKK---IIRDVSEFGIKKGLTIPVHTH 125 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + E+ + IT + +L + + LT RE CL Sbjct: 126 DRVIYAICFAFTDKNIDREIELYLRALSNFFITGYKKLDEPADMSLPILTPREKECLTWT 185 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S E +G+S TVN ++ +A +KL NRI + +AI G I Sbjct: 186 AKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234 >gi|229505968|ref|ZP_04395477.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286] gi|229605500|ref|YP_002876204.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] gi|229356319|gb|EEO21237.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286] gi|229371986|gb|ACQ62408.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] Length = 250 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++S S + + + ++ +S LD +++ ++ D G+ + Sbjct: 23 QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 80 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 H P W + + V G G+ P+ Sbjct: 81 AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 136 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185 G V + + + E L + + L++RE L L Sbjct: 137 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +IA LG+S T+ +L +A +KL + I AI+ G Sbjct: 197 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243 >gi|317050861|ref|YP_004111977.1| regulatory protein LuxR [Desulfurispirillum indicum S5] gi|316945945|gb|ADU65421.1| regulatory protein LuxR [Desulfurispirillum indicum S5] Length = 243 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 9/187 (4%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 H + + D P+ W Q + + Sbjct: 62 TLVQHQCPEPWLETYVVRKLWRTDPVFQQVRRSPEPLRWSQTQNRHSPNPA----LLEAS 117 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKR 167 GI+ G + + + + + + + ++ Sbjct: 118 RHGLTDGISIG--YGAGNRTLISLAGSRQQIHAISSLACRVLPLLAPLIHSASVRIAHRQ 175 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NL+ERE L +G ++EEI+ L +S TV +L KLDAVNR AIAK Sbjct: 176 DIPDTNLSERERELLFWTAEGKSTEEISMILAISRDTVKYHLKRIYQKLDAVNRHHAIAK 235 Query: 228 AIRFGYI 234 A+R G I Sbjct: 236 ALRAGLI 242 >gi|86359968|ref|YP_471858.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284070|gb|ABC93131.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 264 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 81/243 (33%), Gaps = 16/243 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62 ++ ++ + L R+ +K F + +D + +L N D Sbjct: 9 RRQFTTHETLEGRIDQAFEAMKQLGFEALIYDYTPVPYDIDGVIMVPSLLKLRNIAEDMH 68 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAG 117 D D P W + + R G Sbjct: 69 DYWFDRGYFRIDPVQQVALRTSAPFFWNYDPDADTLIRRFMSEDTAPVTRYLSERDMSTG 128 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRS-SAA 171 + PV + V E I + + + LF ++ S Sbjct: 129 VTVPVHMPRGDYATVTGIRFGRNSDFERHALRYIADFNLLAHVFHETAYALFDRKDKSVG 188 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE CL+ + +GY+++EI+ + SV TV +L +A KL A NR QA+ +A + Sbjct: 189 IRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRATHY 248 Query: 232 GYI 234 + Sbjct: 249 RLL 251 >gi|311279344|ref|YP_003941575.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748539|gb|ADO48291.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 237 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 68/227 (29%), Gaps = 15/227 (6%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + +L N + ++A ++ + I + NY + Y D Sbjct: 13 IKNQLETTLNTLGDLSWAYVVLSK-----KDMSCIFGVTNYPDEWVTQYKEKGLQYTDPV 67 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + L P W + +L ++ G F + + + F Sbjct: 68 VITALNRLTPFSWNEKLLVRSDFNFEKLFIQ-ASQFGIINGYTFVLHDNQNNLVTLSFII 126 Query: 137 EF-LMLANEVIIEAH-----GACYQVITDFL---ELFKKRSSAARNLTERETSCLQLAGD 187 ++ H V +L L +K + T RE L Sbjct: 127 PAAKGAEIMELLIQHKGDISLLLASVHETYLTLTSLSEKDTDKHSQFTPRENEILHWTSL 186 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T +E LG+ V TV ++ + K+ N A+ + I Sbjct: 187 GKTYQETGMILGIKVRTVKFHMSNIVKKMGVANARHAVRLGVELQLI 233 >gi|9622950|gb|AAF89989.1|AF210630_2 AHL-dependent transcriptional regulator CinR [Rhizobium leguminosarum] Length = 241 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + + Y + Sbjct: 15 EQIKAAANVDAAIRILQAEYNLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 72 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ + + + + L+ RE CL Sbjct: 129 RALLSLNARIPADEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239 >gi|327189685|gb|EGE56833.1| autoinducer transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 277 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + + Y + Sbjct: 51 EQIKAAPNVDAAIRILQAEYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 107 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 108 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 164 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ + + + + L+ RE CL Sbjct: 165 RALLSMNARIPADHWAELVRRCRNEWIEIAHLIHQKAVYELYGENDPVPALSPREIECLH 224 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 225 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 275 >gi|316931973|ref|YP_004106955.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599687|gb|ADU42222.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 242 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 11/227 (4%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + ELS + + + FA + LD R + Y + Sbjct: 11 HLSSAEDQAELSGAMAVTAAALDLSCFAYLALPQKLDGTPR-----LMSTYPKEWTSHYL 65 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + P W E + + + + G P+ G Sbjct: 66 RSHYERIDPVIMQALRDTEPFRWGIGSTERYLSPAQKRLLDEASQYGIRLGFTVPIHDGH 125 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETS 180 V F E + ++ Q++ F +R A+ L+ RE Sbjct: 126 GPVAAVTFAGNQREAQFERFVTSNPRMLQLMAMFFHSHVRRKLASDLRVDGAALSAREFE 185 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 CL+ A G ++ +I LG+S HT +YL +A KL +QA + Sbjct: 186 CLEWAARGKSAWDIGRILGISHHTAISYLNNAKAKLGVRTVVQAALR 232 >gi|253987735|ref|YP_003039091.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638613|emb|CAR67232.1| similar to probable transcription regulator sdia of escherichia coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779185|emb|CAQ82345.1| similar to probable transcription regulator SdiA of Escherichia coli [Photorhabdus asymbiotica] Length = 242 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 10/222 (4%) Query: 21 LHLIQNRIK-ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 + I I F L+++ FP + + NY + D L Sbjct: 23 IDEICELIDKISGFRLFSLVLKTRFPVSGREVYFFDNYHESWRALYIEKKYWMIDPVLH- 81 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 + P + ES+G+ + +G+ F + G + Sbjct: 82 -FRPVPPTFSRVWDLNFFAESNGKELWYMTQEHGFRSGVTFGLPAFSGTYGIFSVAGKDG 140 Query: 140 MLANE-------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + N+ I++ + + + + + + + RE L+ DG S Sbjct: 141 PIDNDTMYKCSGEILKVYIRIIRYLISHTKYLQTFYIDEISFSHRELEVLRYTADGMISS 200 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA + ++ TV+ +L + KL N+ QAIAKA GYI Sbjct: 201 EIASTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAALLGYI 242 >gi|15966568|ref|NP_386921.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307300395|ref|ZP_07580175.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318260|ref|ZP_07597695.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15075839|emb|CAC47394.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] gi|306895942|gb|EFN26693.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904561|gb|EFN35145.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 260 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 18/243 (7%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 +TL G+ + ++ + I +A + + LD + +L N D D Sbjct: 16 DTLDGR----IDQVFEAMKSIG--FEALIYDYTPVPRDLDGTIMVPSLLKLRNISEDMHD 69 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGI 118 D P W + + R G+ Sbjct: 70 YWFDRGYFRIDPVQQVALRTSTPFFWNYDPDADTLIRRFMSDDTAPVARYLSERDMSTGV 129 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFKKRS--SAA 171 PV + V A E I + + + LF ++ + Sbjct: 130 TVPVHMPRGDYATVTGVRFGGNRAFEGHALRYIADFNLLAHVFHEAAYSLFDAQAFNAGT 189 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE CL+ + +G++++EI+ + SV TV +L +A KL A NR QA+ +A + Sbjct: 190 ARLTERERECLRYSAEGHSAKEISRIIHRSVPTVVMHLNAAAKKLGAKNRTQAVVRATHY 249 Query: 232 GYI 234 + Sbjct: 250 RLL 252 >gi|116249629|ref|YP_765467.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254277|emb|CAK03896.1| putative LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 270 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 79/233 (33%), Gaps = 14/233 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + I +A + + LD + +L N D D Sbjct: 27 IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYWFNRGYFRI 84 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P W + + + R G+ PV + Sbjct: 85 DPVQQVALRTSAPFFWNYDPDADTLINRFMTEDTAPVTRYLSERDMSTGVTVPVHMPRGD 144 Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSC 181 V E I + + + LF R+ + LTERE C Sbjct: 145 YATVTGIRFGRNKDFERHALRYIADFNLLAHVFHETAYSLFDTRAKSVGTIRLTEREREC 204 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + +GY+++EI+ + SV TV +L +AT KL A NR QA+ +A + + Sbjct: 205 LRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKKLGARNRTQAVVRATHYRLL 257 >gi|190894575|ref|YP_001984868.1| putative LuxR family transcriptional regulator [Rhizobium etli CIAT 652] gi|190700236|gb|ACE94318.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|327189865|gb|EGE57000.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 265 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 77/233 (33%), Gaps = 14/233 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + I +A + + LD + +L N D D Sbjct: 22 IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYWFDRGYFRI 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P W + + R G+ PV + Sbjct: 80 DPVQQVALRTSAPFFWNYDPDADTLIKGFMSEDTAPVTRYLSERDMSTGVTVPVHMPRGD 139 Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKK--RSSAARNLTERETSC 181 V E I + + + LF + RS LTERE C Sbjct: 140 YATVTGIRFGRNNDFERHALRYIADFNLLAHVFHEAAYSLFDRKARSVGTVRLTEREREC 199 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + +GY+++EI+ + SV TV +L +A KL A NR QA+ +A + + Sbjct: 200 LRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 252 >gi|241258818|ref|YP_002978702.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863288|gb|ACS60951.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 275 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 79/233 (33%), Gaps = 14/233 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + I +A + + LD + +L N D D Sbjct: 32 IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYWFNRGYFRI 89 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P W + + + R G+ PV + Sbjct: 90 DPVQQVALRTSAPFFWNYDPDADTLINRFMTEDTAPVTRYLSERDMSTGVTVPVHMPRGD 149 Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSC 181 V E I + + + LF R+ + LTERE C Sbjct: 150 YATVTGIRFGRNKDFERHALRYIADFNLLAHVFHETAYSLFDTRAKSVGTIRLTEREREC 209 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + +GY+++EI+ + SV TV +L +AT KL A NR QA+ +A + + Sbjct: 210 LRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKKLGARNRTQAVVRATHYRLL 262 >gi|18104535|gb|AAL59595.1|AF393621_2 CinR [Rhizobium etli] Length = 241 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + + Y + Sbjct: 15 EQIKAAPNVDAAIRILQAEYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 72 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ + + + + L+ RE CL Sbjct: 129 RALLSMNARIPADHWAELVRRCRNEWIEIAHLIHQKAVYELYGENDPVPALSPREIECLH 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239 >gi|229528208|ref|ZP_04417599.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] gi|229334570|gb|EEO00056.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] Length = 250 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++S S + + + ++ +S LD +++ ++ D G+ + Sbjct: 23 QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 80 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 H P W + + V G G+ P+ Sbjct: 81 AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 136 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185 G V + + + E L + + L++RE L L Sbjct: 137 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLEYSDPNRSALLSKREKEVLSLT 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +IA LG+S T+ +L +A +KL + I AI+ G Sbjct: 197 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243 >gi|218661626|ref|ZP_03517556.1| autoinducer transcriptional regulator protein [Rhizobium etli IE4771] Length = 243 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + + Y + Sbjct: 17 EQIKAAPHVDAAIRILQAGYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 73 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 74 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 130 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ + + + + L+ RE CL Sbjct: 131 RALLSMNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 190 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 191 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 241 >gi|37223228|gb|AAQ90213.1| LuxR [Aliivibrio logei] Length = 232 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 82/216 (37%), Gaps = 11/216 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +G +S +I++ LG SV TV +L +A +KL+ NR Sbjct: 197 CEGKSSWDISKILGCSVRTVTFHLTNAQMKLNTTNR 232 >gi|332525929|ref|ZP_08402070.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109480|gb|EGJ10403.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 242 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 14/239 (5%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 + L +S RL + F + + P + ++ L N D + Sbjct: 10 DFLDIGTASDHATFKSRLVSFAQNLD---FQIVQAVLMIKRPSQPSVVSRLSNLPSDFAE 66 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 ++ D L + +P ++ + T +E+ + GI+ + Sbjct: 67 ASMDEADSRRDPVLQRLRTASVPFVY---DQTTYVEAGAGDLWETQARYGFRTGISMSLH 123 Query: 124 LGFHKNGYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELF---KKRSSAARNLT 175 + + E + A+E ++ + + LT Sbjct: 124 MPGGRQFLFGVDREQALPADERELMRLMADLQLLAVHAQETAARVMMPKLDSLPKRPKLT 183 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ +G ++ I + L +S HTV +L +A KL+ ++ A+ KA+ G + Sbjct: 184 PREREVLQWTREGKSAWAIGQILSMSEHTVVFHLRNAMTKLEVSSKHSAVLKAMEIGLL 242 >gi|254521823|ref|ZP_05133878.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219719414|gb|EED37939.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 230 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 79/231 (34%), Gaps = 7/231 (3%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L +++ SL + LH I + ++ + L Q++ ++ + D Sbjct: 4 LLELERARSLDAVGAVLHGIAAPLGYDRVLVFATGTGLKR-GTQRVYWINGDWLGEGSDT 62 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + H P W + + Q+ + G L G+ PV Sbjct: 63 DLA-GYLHACPVNRHVLDSDAPFFWSKR--QGLRGERYQVVKQPRGEGL--HGLQVPVFG 117 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQ 183 G + F + + ++ A L + ++ + +L + RE L+ Sbjct: 118 TTGLEGAISFAGTSIDASASARLQLEAAATAAFRAARRLAEVPAALSGSLLSTREREVLR 177 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIA LGLS TV +L A +L QA+ A R G I Sbjct: 178 WVAAGRRQAEIATTLGLSARTVENHLRHARQRLGVATTAQAVRAATRRGEI 228 >gi|2791836|gb|AAC38403.1| transcriptional activator CarR [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 21/232 (9%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 E+ + + F+ + ++ + NY + D Sbjct: 4 EIHSFIKRKLKGVGDVWFSYFMMSKT-----STSHPYIISNYPEAWMNEYLKKEMFLSDP 58 Query: 76 FLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + + P W ++ + +G F + + + Sbjct: 59 IIVASLARITPFSWDDNDLVTLRAKNQDVFISSV--QHDISSGYTFVLHDHDNNVATLSI 116 Query: 135 TSEFLMLAN---------EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSC 181 + ++ + +V+ + + + L+ RET Sbjct: 117 ANHLEDADFEKCMKSHENDLQMLLVNVHEKVMAYQRAIKDQAKPPDSSRNALLSPRETEV 176 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G T +E++ LG+S TV ++ ++ KLD +N AI KA+ Sbjct: 177 LFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228 >gi|239908483|ref|YP_002955225.1| LuxR family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239798350|dbj|BAH77339.1| LuxR family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 257 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 7/183 (3%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 NY ++ + D + + P W + + + L Sbjct: 75 NYPVEWLQTYKEKNFSGIDVIVKRNFTSFTPQYWDHTYKAHKP---AREFITLASDFNLI 131 Query: 116 AGIAFPVR--LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G + R + F+ F VI + + + R Sbjct: 132 HGYTYGARPFGFCKQASLFSFSGNFKKYDPTVIAILQTIVPHLHLASSRIIESRLIQHNR 191 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L G +S +I+ L +S TVN ++ + KLD NR QA+A A Sbjct: 192 KLLSGREREVLSWLKHGKSSWDISTILQISECTVNYHIYNIIKKLDVQNRPQAVAVATHL 251 Query: 232 GYI 234 G + Sbjct: 252 GIL 254 >gi|297580055|ref|ZP_06941982.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535701|gb|EFH74535.1| transcriptional regulator [Vibrio cholerae RC385] Length = 253 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 7/227 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++S S ++ + + ++ +S LD +++ ++ D G+ + Sbjct: 26 QLEESHSFSKVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 83 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 H P W + + V G G+ P+ Sbjct: 84 AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 139 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185 G V + + + E L + + L++RE L L Sbjct: 140 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 199 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +IA LG+S T+ +L +A +KL + I AI+ G Sbjct: 200 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246 >gi|15966467|ref|NP_386820.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15075738|emb|CAC47293.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] Length = 247 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 4/231 (1%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + + EL + + +R +F + + A + ++L L N+ + Sbjct: 20 EIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERL--VLSNWPAELVQQ 77 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + + + LP+ + E + +RL A + Sbjct: 78 YDAGETFQTSELVERLRQTKLPVTGGPELMEPAGKGAGKAAFIRLPPHAGMGH-FAVLLH 136 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + + + A + A Q+ F S A L+ RE CL+ Sbjct: 137 TTYGEPFVAVLSGTRDEPAGAERATLYLALLQLFECLERTFDAGSGAREKLSSREVECLR 196 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G +S+EIA LG+S +TV++Y SAT KLDAVNR+QAIA+A+R I Sbjct: 197 WAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247 >gi|13472562|ref|NP_104129.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023308|dbj|BAB49915.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 256 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 5/226 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++ + R I I A F LY ++ + + + + C +Y + + Sbjct: 33 AVTIPDAVRRCRWISVDINASAFGLYFVSPSPERA--RLVPCFDSDYPGIAVAT-KFIAG 89 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL--PFAGIAFPVRLGFHK 128 G++ + H ++ P W + E G L+ + L +GIAFPV + Sbjct: 90 ANGEEIVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQLSPLAPGTSGIAFPVHADRGQ 149 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G V+F + L + + E H C+ + + + R +++RE CL+L +G Sbjct: 150 CGLVVFLGSKMALPQDALYEIHARCFSLFAAVARIRPSDAGRMRAISKRELECLKLTANG 209 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEIA L LSVHT N YL +T KL+AVNR QA+AKA+R G I Sbjct: 210 NTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|209552217|ref|YP_002284132.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539329|gb|ACI59261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 258 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 82/233 (35%), Gaps = 14/233 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + I +A + + LD + +L N D D Sbjct: 22 IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNIADDMHDYWFDRGYFRI 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P W + + + R G+ PV + Sbjct: 80 DPVQQVALRSTAPFFWNYDTDADTLINRFMSDDTAPVARYLNERDMSTGVTVPVHMPGGD 139 Query: 129 NGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSC 181 V EF A I + + + LF K++ + LTERE C Sbjct: 140 YATVTGIRFGGNSEFERHALRYIADFNLLAHVFHETAYSLFDKKALSVGTVRLTEREREC 199 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + +G++++EI+ +G SV TV +L +A KL A NR QA+ +A + + Sbjct: 200 LRHSAEGFSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 252 >gi|326326038|ref|YP_004250847.1| putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] gi|323669089|emb|CBJ93133.1| Putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] Length = 232 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 15/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++++ ++ +LH + N ++ NFA ++ I ++ Y DI Sbjct: 11 ANTVSDVKCQLHKLANLLEFDNFAF---GIKVNNLTGIPTIDMINTYSDQWNDIYKKNNF 67 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + ++ PIIW+ + G + P + Sbjct: 68 ISKDPIVLEGSATSNPIIWEESL------KPTHEIFEIANDFNLNIGWSKPSHKPNGVSS 121 Query: 131 YVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQL 184 F+ L + F + S LT RE L+ Sbjct: 122 LFSFSRSSESLTEAELWKQTPYLLWVANIAEQAFERVNSGYHGYSLVEVLTPREIEILKW 181 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +G T+ E + L +S TV ++ +A KL+ N+ A+ KA+ G +C Sbjct: 182 SAEGKTASETSMILSISERTVTFHITNAVKKLNTCNKTSAVIKAVTLGLVC 232 >gi|37223233|gb|AAQ90216.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 11/216 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +G +S +I++ LG S TV +L +A +KL+ NR Sbjct: 197 CEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNR 232 >gi|153825393|ref|ZP_01978060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|255746365|ref|ZP_05420312.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262158280|ref|ZP_06029397.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|262169155|ref|ZP_06036848.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] gi|262192074|ref|ZP_06050237.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] gi|149740939|gb|EDM55016.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|255736119|gb|EET91517.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262022436|gb|EEY41144.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] gi|262029962|gb|EEY48609.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|262032056|gb|EEY50631.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] gi|327485870|gb|AEA80276.1| transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 239 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++S S + + + ++ +S LD +++ ++ D G+ + Sbjct: 12 QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 69 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 H P W + + V G G+ P+ Sbjct: 70 AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 125 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185 G V + + + E L + + L++RE L L Sbjct: 126 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 185 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +IA LG+S T+ +L +A +KL + I AI+ G Sbjct: 186 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 232 >gi|189218591|ref|YP_001939232.1| LuxR family transcriptional regulator [Methylacidiphilum infernorum V4] gi|189185449|gb|ACD82634.1| Transcriptional regulator LuxR family [Methylacidiphilum infernorum V4] Length = 251 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 80/226 (35%), Gaps = 7/226 (3%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 E L IQ I + A + ++ L H++ D D Sbjct: 24 EFKTVLKKIQELIPSSLIACGLVKINSLNEVKKMLKIINHSFPSDLIAFYLQQKYQKADP 83 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP-VRLGFHKNGYVIF 134 + I+ ++ ++ ++ + G++F V ++ F Sbjct: 84 VVKTALRLRGNIVRRTEIFRYFQDNFRSQYLKDASDISLHTGLSFGIVEEKTYRASLFSF 143 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQLAGDG 188 + + + +G Y + L E+ K + + LT RE L+ DG Sbjct: 144 CDKEIEKSPRHETILNGLKYPLHLALLNCSHPQEVEKPAKESPQALTARELEILKWIMDG 203 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EI+ L +S TV +L + +KLD NR QA+A A + Sbjct: 204 KTNWEISCILKISEATVKFHLKNIFLKLDVQNRCQAVATAFHRRLL 249 >gi|190892657|ref|YP_001979199.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190697936|gb|ACE92021.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 260 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + + Y + Sbjct: 34 EQIKAAPNVDAAIRILQAEYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 90 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 91 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 147 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ + + + L+ RE CL Sbjct: 148 RALLSMNARIPADGWSELVRRCRNEWIEIAHLIHQKAVYELYGEHDPVPALSPREIECLH 207 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 208 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258 >gi|149907939|ref|ZP_01896607.1| transcriptional regulator, LuxR family [Moritella sp. PE36] gi|149808945|gb|EDM68876.1| transcriptional regulator, LuxR family [Moritella sp. PE36] Length = 244 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 7/228 (3%) Query: 10 KSSSLQE-LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++S + +S L I + A I++ ++F + N + +I Sbjct: 19 RANSNSDSISDILTKTNELIPFQ-AATIAIDTNIEFALTAKQQIFTQNLSEEWQEIYFQR 77 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L + + W++ + S ++ + G++ V+ Sbjct: 78 KFFNQDPILSAIANTTSAVDWRTATSQANYISDD--FKQMSKKYVGSDGLSILVKT-DVG 134 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAG 186 + + L E + F + ++S NL++RE L A Sbjct: 135 STLISLVIPESSLDAEHNQLIEYIAPHIHEVFNRQGENIRKSLWKPNLSKRELEVLNWAK 194 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ + + L +S TV + + KL+ VNR QAIA+AI FG + Sbjct: 195 EGKSNWDTSLILAISERTVKFHFSNIFKKLEVVNRSQAIARAIHFGLV 242 >gi|209550247|ref|YP_002282164.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536003|gb|ACI55938.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 241 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + + ++Q + + Y + Sbjct: 15 EQIKAAANVDAAIRILQAEYGLGFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + LP W ++ + + V + + G + PV + Sbjct: 72 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + + ++ + + + + L+ RE CL Sbjct: 129 RALLSVNARIPVEEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I+ LG+S HT YL +A KL A ++A++ I Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239 >gi|290454885|emb|CBI67623.1| sR protein [Pseudomonas fuscovaginae] Length = 237 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 59/208 (28%), Gaps = 11/208 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 F Y++ P NY D + H + P+ W + Sbjct: 34 FEQYSLGLRFPLPISSPKFHLSSNYSPAWESAYIDNNYFSIDQTVKHGLTEHRPLCWSAD 93 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN----EVIIE 148 + G P R G + + + E + Sbjct: 94 -----AFTEHLHFWEDAKYYQLVHGWCTPSRAKHDTMGMLSLVRSASPITSLEFNEKETK 148 Query: 149 AHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + L A LT RE L+ + G T E L + TV Sbjct: 149 LLWISHIAHSTMLNFIAPNYIPEIAATLTVREVETLKWSATGKTYTETGLILSIDERTVK 208 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +A KL + N+++A KA G + Sbjct: 209 FHLVNAMRKLHSSNKVEAAMKAYALGML 236 >gi|2495418|sp|Q46751|CARR_PECCC RecName: Full=Transcriptional activator protein CarR gi|765139|gb|AAC45995.1| CarR [Pectobacterium carotovorum] Length = 244 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 21/232 (9%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 E+ + + F+ + ++ + NY D Sbjct: 4 EIHSFIKRKLKGVGDVWFSYFMMSK-----NSTSQPYIISNYPEAWMKEYIKKEMFLSDP 58 Query: 76 FLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + + P W ++ + +G F + + + Sbjct: 59 IIVASLARITPFSWDDNDIVTLRAKNQDVFISSV--QHDISSGYTFVLHDHDNNVATLSI 116 Query: 135 TSEFLMLAN---------EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSC 181 + ++ + +V+ + + + + L+ RET Sbjct: 117 ANHLEDANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINDQDNPPDNSRNALLSPRETEV 176 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G T +E++ LG+S TV ++ ++ KLD +N AI KA+ Sbjct: 177 LFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228 >gi|254462681|ref|ZP_05076097.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2083] gi|206679270|gb|EDZ43757.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium HTCC2083] Length = 244 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 15/220 (6%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L+ + ++ +N+ D + YD + D L Sbjct: 31 LNDLCENLELDYATYCAVNTVSDQ------VIGFTTYDDAWKEHYTSQRFQNIDPTLHLP 84 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + PI WQ ++E ++ + G++ P+ + + G + T + + Sbjct: 85 MRSIAPIDWQRLREHR---DFDRVFEHARDFKIKDQGLSVPIHGPYGEVGLISVTRDCSL 141 Query: 141 LANEVII-----EAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEI 194 E + E A + ++ + L+ RE LQ G + +I Sbjct: 142 GTWEKLRKNVITELQTAAVSLHDTVMQSDTLGYALRRPQLSSRECEVLQWTAAGKSQIDI 201 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S TV +L SA KL A++ QA+ +AI G+I Sbjct: 202 GVILTISSRTVEVHLRSARSKLSALSTPQAVGRAIGMGFI 241 >gi|307292969|ref|ZP_07572815.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306881035|gb|EFN12251.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 263 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 2/200 (1%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + PR + + NY + D P W Sbjct: 35 GFPYVAMIQHGGLPRLVERALVITNYPAEFVRFYTESHAYVIDPVYEVSQLLDRPFSWDE 94 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANEVIIEAH 150 I + + G+ P+ + + F M + ++ H Sbjct: 95 IPGYVDLTGTQSALFEEARLHGLVHGVTVPLHIPSESHASCTFARAEPIMASPSLLTTLH 154 Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 L L R LT RE C L G + EI++ LGLS +V ++ Sbjct: 155 IVAAFGFKAGLRLHHASRGHDVPRLTRREAQCTALVAVGKSDWEISQILGLSETSVRYFV 214 Query: 210 GSATVKLDAVNRIQAIAKAI 229 A + R + +A+A+ Sbjct: 215 SHAKQRYGVYKRSELVARAL 234 >gi|260430562|ref|ZP_05784535.1| regulatory protein, LuxR [Citreicella sp. SE45] gi|260418591|gb|EEX11848.1| regulatory protein, LuxR [Citreicella sp. SE45] Length = 253 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 79/250 (31%), Gaps = 24/250 (9%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58 +SE + G++ + ++ + + + S + E N Sbjct: 12 LSEGSHLGQR---VDAAFRQMQG----VGFDGMIYDYTPMVSGPGADVPIPSVFEQRNLG 64 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE-----ETVIESSGQLSVRLEGGLL 113 + + D P W + ++ + + Sbjct: 65 DEMRQHWSEDEYIRLDPVQRVAMRSAAPFCWSYDSDIDSIIRPMLTPDIEPVMSYLRERE 124 Query: 114 PFAGIAFPVRLGFHKNGYVI---------FTSEFLMLANEVIIEAHGACYQVITDFLELF 164 F+G+ P+ L V ++ ++ + AH + + L Sbjct: 125 VFSGVTVPIHLPNGDFATVTGVSLGRRQNWSGGTSRAIADLSLIAHLFNQSAV-ELLGFD 183 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LT RE CL A G +++E A + SV TV +L +A KL A NR A Sbjct: 184 HEDGTQEVRLTPRERECLTYASFGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHA 243 Query: 225 IAKAIRFGYI 234 + A R I Sbjct: 244 VTIATRRRLI 253 >gi|218672647|ref|ZP_03522316.1| transcriptional regulator, LuxR family protein [Rhizobium etli GR56] Length = 265 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 77/228 (33%), Gaps = 13/228 (5%) Query: 20 RLHLIQNR-IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 ++ +A + + LD + +L N D D D Sbjct: 32 AFEAMKRLGFEALIYDYTPVPYDLDGAIMIPSLLKLRNIADDMHDYWFGRGYFRIDPVQQ 91 Query: 79 HFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 P W + + R G+ PV + V Sbjct: 92 VALRSSAPFFWNYDTNADTLINRFMSDDTAPVTRYLRERDMSTGVTVPVHMPGGDYATVT 151 Query: 134 FTSEFLMLANEV-----IIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAG 186 E I + + + LF + RS +LTERE CL+ + Sbjct: 152 GIRFGEDSDFERHALRYIADFNLLAHVFHETAYSLFDRKARSVGTIHLTERERECLRHSA 211 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +GY+++EI+ +G SV TV +L +A KL A NR QA+ +A + + Sbjct: 212 EGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 259 >gi|150397799|ref|YP_001328266.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150029314|gb|ABR61431.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 247 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 2/230 (0%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + + EL + + +R +F + + A + ++L+ L N+ + Sbjct: 20 EIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLM--LSNWPAELVQQ 77 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + + LPI E + +G+ L A A + Sbjct: 78 YDASETFQASLLIERLRQTKLPIAGGPELMEPARKGAGKAPAILLPPHADMAHFAVLLHT 137 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + V+ + + A + A Q+ F S A L+ RE CL+ Sbjct: 138 TYGEPFVVVLSGKRDEPAGGERATLYLALVQLFECLERTFDAGSGAREKLSSREIECLRW 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G +S+EIA LG+S +TV++Y SAT KLDAVNR+QAIA+A+R I Sbjct: 198 AAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247 >gi|312959686|ref|ZP_07774203.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] gi|311286403|gb|EFQ64967.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] Length = 254 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 87/237 (36%), Gaps = 14/237 (5%) Query: 12 SSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 SL E L+ ++ + + + D + EL N D + Sbjct: 16 RSLDEQMDNTFLLAQQLGFDALVYDYTPVPTDQDGALITPSVLELRNTPPDWHALWCGKG 75 Query: 70 ETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D S + P +W + +I+ G++ P+ L Sbjct: 76 FYQIDPVQHLALSTVSPFVWSYEAKTDTPLQKIIDPCHAPVSSYLHDQQLTCGVSVPIHL 135 Query: 125 GFHKNGYVI-----FTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTER 177 + S L A + + E + + LF + R+ +LT+R Sbjct: 136 PRGGFASLTGLRTGKASSVLQDAQQTLSEFSVISHALQEAAYPLFSKELRTYPYIHLTKR 195 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E CL+ A +G T+ +IA +L S+ V+ +L SA KL A NR+QA+ +A + + Sbjct: 196 ERECLKWAAEGLTAAQIATQLSRSLAVVSLHLASAMHKLGAKNRVQAVVRATHYRLL 252 >gi|2873371|gb|AAC38168.1| CarR [Serratia marcescens] Length = 244 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 23/230 (10%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + +L N + FA + ++ + + NY D D Sbjct: 9 IERKLKAYGNVL----FAYFMMDKS-----SLSNPVFISNYPQKCIDTYIDNKLFINDPV 59 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + + P W + + +++ L G F + + + + Sbjct: 60 IHYSLKRVTPFSWDDNDLAVLRSENEDVAMYLR-EHDITVGYTFVLHDHDNNLAILTIAN 118 Query: 137 EFLMLANEVII-----EAHGACYQVITDFL---ELFKKRSSAARNL-----TERETSCLQ 183 E I + + K +++ L T RET L Sbjct: 119 NDEKNDFEDFIKNRENDLQMLLVTTHEKAMKHKHFVKGKTAPLDCLQSALITPRETEVLF 178 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G T +E++ LG+S TV ++ ++ KL+ +N AI+KA+ Sbjct: 179 LVSRGNTYKEVSRTLGISEATVKFHINNSVRKLNVINSRHAISKALELNL 228 >gi|170694163|ref|ZP_02885318.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170140903|gb|EDT09076.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 262 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 65/225 (28%), Gaps = 9/225 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH----NYDLDSGDIPNILIET 71 +++ + + F Y I+ L Y D Sbjct: 39 DITSLVESFGHEAGKLGFPHYMISRVTRSRSTSTRRTALEMIGARYPQDWVRYYQRRDYA 98 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D P W I + + + + G AG++ PV Sbjct: 99 STDPVHRAAFLQSAPFRWHDI---IGLSKAERRLLDEAGEAGLRAGLSIPVHQSDGSILL 155 Query: 132 VIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGY 189 + + + + Q + L S A LT R+ CL G Sbjct: 156 FNLSGPLRSVNDTINSRLAYLISVQFHYELHRLALIPSRRMAHLLTARQLECLTWVARGK 215 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI E LG S +TV ++ A L+ +R A A G I Sbjct: 216 TSAEIGEILGRSRYTVEFHIKEAMDALNIRSRTAAAVHATVQGII 260 >gi|90797252|gb|ABD97988.1| transcriptional activator AlpR [Azospirillum lipoferum] Length = 234 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 7/223 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 + L R + +A + D + NY + Sbjct: 16 TDEDALFRRFESAATELGYPFYAFGALWGDPDAIKLNPAPAVRLNYPAEWVAHYFSTGYN 75 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + W ++ +GIA P+R Sbjct: 76 KIDPVVLVAPYAQTSVTWDELRSYRP------EFFDDAATFGLRSGIAIPLRAIQGCYVL 129 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + + + + + + + L + + LT ++L+ G ++ Sbjct: 130 CVASGDDRPIRPKERARLELFAHGLFAAYQRLRE-LPAQDHGLTANTVQVIRLSMAGLST 188 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L L++ V+ L A KL N Q KAI+ G + Sbjct: 189 AEICSRLKLTMDGVHWCLKDARKKLKCANTAQVYLKAIQQGIV 231 >gi|78222725|ref|YP_384472.1| LuxR family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193980|gb|ABB31747.1| transcriptional regulator, LuxR family [Geobacter metallireducens GS-15] Length = 246 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 75/237 (31%), Gaps = 13/237 (5%) Query: 4 NTLTGKKS-SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + +S + ++ L H + + + A+ +Y + Sbjct: 14 ELIDASRSCADMERLKRLFHSLNDLLSFD-MAVCGTARFDGAGTMNAQQIINISYPEEWL 72 Query: 63 DIPNILIETYGDDFLFH--FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + D + + P W + Q + L G +F Sbjct: 73 SLYAEHDFAAVDPVVRAHIADFSAKP--WSEAYLKWG---RPQPFLSLAEDFGIRKGYSF 127 Query: 121 PV---RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 V + + ++ + +++ ++ + ++ S+ LT R Sbjct: 128 GVLSSNDRTASIFSLCVSEKYPVHTPQILDILAPYFHEALRRTVQTDL-PSACLATLTPR 186 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + +G EI+ LG+S TV + + KL A NR A+A AI G I Sbjct: 187 EIEVISWLANGKNYWEISVILGISERTVKFHTSTIVQKLGAANRSHAVAIAISTGLI 243 >gi|253987738|ref|YP_003039094.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638616|emb|CAR67235.1| similar to probable transcription regulator sdia of escherichia coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779188|emb|CAQ82348.1| similar to probable transcription regulator SdiA of Escherichia coli [Photorhabdus asymbiotica] Length = 242 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 87/234 (37%), Gaps = 27/234 (11%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + E+ ++ I F+L+++ FP + + +NY ++ Sbjct: 23 VSEVFEIINKI------SGFSLFSLILKARFPISNREVYFFNNYHESWRNLYIERKYWMI 76 Query: 74 DDFLFHFNSGLLPI------IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D L P+ IW ES+GQ + +GI F + Sbjct: 77 DPTL-----NFRPVPPSFSKIWDLDFFS---ESNGQELWYVSQKHGFRSGITFGLPAFSG 128 Query: 128 KNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 G + + NE I+ + + +T + + + + RE Sbjct: 129 TYGIFSVAGKDGHIDNETMYKCSGEILGVYIRIIRYLTSHTKYLQFFYVDETSFSNRELE 188 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ DG TS EIA + ++ TV+ +L + KL N+ QAIAKA+ GYI Sbjct: 189 VLRYTADGMTSSEIALTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAVLLGYI 242 >gi|188533099|ref|YP_001906896.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99] gi|188028141|emb|CAO95998.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99] Length = 240 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 68/232 (29%), Gaps = 20/232 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 +S +L + + +A ++ + I + NY + Y D Sbjct: 11 ISKQLEAALSDLGEFIWAYVVLSK-----KDMSCIFGVTNYPGEWVKQYREKGLQYTDPV 65 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT- 135 + + L P W +L R G F + + + FT Sbjct: 66 VITSLNRLTPFAWDENLLAGSGFRFSKLFDRAR-EFGVTNGYTFVLHDYNNNLVTLSFTF 124 Query: 136 SEFLMLANEVII-----EAHGACYQVITDFLEL--------FKKRSSAARNLTERETSCL 182 + E V +L L + RS A TERE L Sbjct: 125 TPECRAEATETFIKNKGEISLLLASVHETYLTLTSLSEKNASRSRSENASRFTERENEIL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T E A LG+ TV ++ + KL N AI + I Sbjct: 185 YWASVGKTYPETAMILGIKTCTVKFHMSNIVKKLGVANARHAIRLGMELQLI 236 >gi|229589152|ref|YP_002871271.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361018|emb|CAY47880.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 254 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 84/237 (35%), Gaps = 14/237 (5%) Query: 12 SSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 SL E ++ ++ + + D + EL N D + Sbjct: 16 RSLDEQMDNTFILAQQLGFDALVYDYTPVPIDQDGALITPSVLELRNTPPDWHALWCSKG 75 Query: 70 ETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D S + P +W + +I+ G++ P+ L Sbjct: 76 FYQIDPVQHLALSTVSPFVWSYDVKVDTPLQKIIDPCHAPVSTYLHDQQLTCGVSVPIHL 135 Query: 125 GFHKNGYVI-----FTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTER 177 + L A + + + + + LF + R+ +LT+R Sbjct: 136 PRGGFASLTGLRTGKAHSVLQDAQQTLSDFSLISHALQEAAYPLFSKELRTYPHIHLTKR 195 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E CL+ A DG T+ EIA +L S+ V +L SA KL A NR+QA+ +A + + Sbjct: 196 ERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHYRLL 252 >gi|227112193|ref|ZP_03825849.1| quorum-sensing transcriptional activator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 21/232 (9%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 E+ + + F+ + ++ + NY D Sbjct: 4 EIHSFIKRKLKGVGDVWFSYFMMSK-----NSTSQPYIISNYPEAWMKEYIKKEMFLSDP 58 Query: 76 FLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + + P W ++ + +G F + + + Sbjct: 59 IIVASLARITPFSWDDNDLVTLRAKNQDVFISSV--QHDISSGYTFVLHDHDNNVATLSI 116 Query: 135 TSEFLMLAN---------EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSC 181 + ++ + +V+ + + + + L+ RET Sbjct: 117 ANHLEDANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINVQDNPPDNSRNALLSPRETEV 176 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G T +E++ LG+S TV ++ ++ KLD +N AI KA+ Sbjct: 177 LFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228 >gi|222086655|ref|YP_002545189.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724103|gb|ACM27259.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 243 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 78/235 (33%), Gaps = 6/235 (2%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S T + + + L + A + D + + Sbjct: 13 LSAELAT---ARTQTAFAQALERTSSAFGFSQVAFLNAPVSEDSMLTP--LVIEGSVQPQ 67 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIE-SSGQLSVRLEGGLLPFAGIA 119 + L ++P W +++ + + L GI Sbjct: 68 FLRDFDRQQLLRRCPMLQRVRDSVMPRAWHLLEKNISQDMELPRELHALLLSHNCPMGIV 127 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 P+ + F L + E + Q + + + S L+ RE Sbjct: 128 IPINSSDGQRLVFWFMGNRSSLGQSELNELNMIMLQAHDIYNCIKRNDGSVLHMLSAREL 187 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 188 EVVRWTAQGKTSVEIGQILSLSDHTVNAYMMNAIKKLDCVNRTQLVAKAIRLKLI 242 >gi|251787751|ref|YP_003002472.1| LuxR family transcriptional regulator [Dickeya zeae Ech1591] gi|247536372|gb|ACT04993.1| transcriptional regulator, LuxR family [Dickeya zeae Ech1591] Length = 250 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 70/232 (30%), Gaps = 20/232 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + + +A +N + + NY + DI + D Sbjct: 15 IQNFIDRKLKSYGDLKYAYLIMNKKKPTD-----VVIISNYPPEWVDIYRSNNYQHIDPV 69 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT- 135 + + + P W + ++ L G F + + + F Sbjct: 70 ILTAINKISPFSWDDDLVISSKLKFSRIFN-LSKEYDIVNGYTFVLHDPGNNLATLSFMV 128 Query: 136 SEFLMLANEVIIE-----AHGACYQVITDFLELFKK--------RSSAARNLTERETSCL 182 E E II+ L ++ + A ++RE L Sbjct: 129 EEHRSSELEEIIQNNRDKLQMLLISAHEKLTSLHREMSRNRHNSKPQEADIFSQRENEIL 188 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T +EIA LG++ TV ++G+ KL +N AI + I Sbjct: 189 YWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|260461786|ref|ZP_05810032.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785327|ref|YP_004144803.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032427|gb|EEW33692.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171215|gb|ADV14753.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 245 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 11/205 (5%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88 +FA ++ S + NY D + +G P Sbjct: 37 DLLSFAYLSLPSLPSG-----KPKLISNYPPRWAMQYLENQYEKLDPVILRARNGGRPFQ 91 Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 W S + + Q G+ P+ + V F ++ +IE Sbjct: 92 WGSDLWGGKMSPAQQQLFDEAARFSIRCGLTIPIVDLRGRTAAVTFAADEPRPVFLRVIE 151 Query: 149 AHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + Q++ +R LT RE CL+ A G ++ LG+ Sbjct: 152 RYEQALQLMATCFHRCVRRKLPGDRTVDGILLTSREYMCLRSAARGNSAWVTGRILGIKP 211 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 T+ +L +A KL + QAIA Sbjct: 212 RTIAFHLENAKKKLGVRTQNQAIAL 236 >gi|92109679|ref|YP_571965.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802761|gb|ABE65133.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 234 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 70/223 (31%), Gaps = 14/223 (6%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + + +A +++ +Y ++ +I T D Sbjct: 21 IHNAIKNFTVASGFDRYAYIHVHAGDGVGFT--------DYPVEWQNIYLEKRYTVIDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSG-QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + W + S + +G++ P+R + + + Sbjct: 73 VTTAKRTMKMFAWSAEDPTVWRGSREIKQFYSEATDFGIRSGVSVPIRTSYGRTAMITLA 132 Query: 136 SEFLM---LANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 S+ + + A + + +L+ +E + L + G + Sbjct: 133 SDRRQVELPPWDPMQAALALAYIHIHLSLASASSLKVGEV-SLSAQEATSLSWSSHGKSM 191 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA+ LG+ TV YL +A KL A N QA+ A+ I Sbjct: 192 NVIADLLGIKPRTVQFYLDNARDKLGASNLQQAVRIAMEKKLI 234 >gi|190014846|ref|YP_001967610.1| TraR [Agrobacterium tumefaciens] gi|71849649|gb|AAZ50597.1| TraR [Agrobacterium tumefaciens] Length = 234 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L I +A I + I + NY + D Sbjct: 21 LKTGLADIAEHYGFTGYAYLHIQH--------RHITAVTNYHREWQSTYFDKKLVALDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + +GI P+R S Sbjct: 73 VKRARSRKHIFTWSGEQERPSLSRDERSFYARAADFGIRSGITIPIRTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 + ++ + I+A A + + R++ L +E S L+ G T E Sbjct: 133 DKPVIDLDREIDAVAAASTIGQIHARISYLRTTPTAEDAAWLDPKEASYLRWIAVGMTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ G+ ++V L A + D ++ IA AIR I Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDVHSKAHMIALAIRRKLI 234 >gi|116250449|ref|YP_766287.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255097|emb|CAK06171.1| putative GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 234 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 8/226 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + L NFAL I+ A P ++ I + + G L Sbjct: 16 SRAINRTDFFRLLKSAAQHYNFDNFALARISEA-SAPFGERDIVITNVAERRVGLFITTL 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 E G P+ +S Q E + G+ F P+ + Sbjct: 75 KEALGTVRAKTAQFLATPVHGRSAQPEDYPSD--LVFNEFLSGVFLF----IPLFTPEGR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ E I + ++ E + LT+RE+ ++ +G Sbjct: 129 RYCLVLCGERQEPDQSEIADMLLDAMRIFDKLYE-EILTPEMSGRLTQRESEIVKWTSEG 187 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|190573818|ref|YP_001971663.1| putative LuxR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011740|emb|CAQ45360.1| putative LuxR family transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 234 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 7/235 (2%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L +++ SL + L I + ++ + L+ Q++ ++ D Sbjct: 4 LVQALLEMERARSLSAVGAVLRGIAAPLGYDRVLVFATGTGLER-GTQRVYWIEGDWFGD 62 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D + H P W + V Q+ + G L G+ Sbjct: 63 GSDTDLA-GYLHACPVNRHVLDSDAPFFWSK--HQGVRGERYQIVKQPRGEGL--HGLQV 117 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERET 179 PV G + + + ++ A L + + + L+ RE Sbjct: 118 PVFGTTGLEGAISVAGTSIDASASARLQLAAAATAAFRAARHLVESPAELSGSALSTRER 177 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G EIA LGLS TV +L A +L QA+ A R G I Sbjct: 178 EVLRWVAAGRRQAEIAATLGLSTRTVENHLRHARQRLGVATTAQAVRAANRRGEI 232 >gi|218461489|ref|ZP_03501580.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 234 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 8/226 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + L NFAL I+ A P ++ + + G L Sbjct: 16 SRAINRTDFFRLLKAAAQHYHFDNFALARISEA-SAPFGERDVVITSVPERRVGLFIATL 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 ET G P+ E S +L G+ F P+ + Sbjct: 75 KETLGTVRAKSAQFLATPV--HGRSAEPDTYPSDRLFNEFRSGVFLF----IPLFTPEGR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ + E I + ++ E + LT+RE+ ++ +G Sbjct: 129 RYCLVLSGEREEPDQGEIADLLLDAMRIFDKLYE-EILTQEMSGRLTQRESEIVKWTSEG 187 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|307315516|ref|ZP_07595067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306898770|gb|EFN29428.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 234 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 12/228 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + + L + + +A + F + NY + D Sbjct: 15 ARTREMFNGALTELARELGFEYYAYLNLQPVGTFA--------VSNYSPEWQDRYFSKSF 66 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + S + W S V + G +GI PV F + Sbjct: 67 SEIDPVVQIAKSTMRAFTWSSENTRKVKSRRVRQFYLDAAGFGIRSGITIPVATAFRRIA 126 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAG 186 + S L + I+ A V + + + + + +T ++ L+ + Sbjct: 127 MLTIASHKPSLLLNLDIDPVAAATAVAQLHVRIEQAQIEPTAKPSIRMTAKQALMLKWSS 186 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G + EIA ++ VN ++ +A KL A + QA A A + I Sbjct: 187 EGKSMSEIATIENMTYANVNFHMNNARRKLGASTQAQATALATKLRLI 234 >gi|86356279|ref|YP_468171.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280381|gb|ABC89444.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 87/226 (38%), Gaps = 8/226 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + L NFAL I+ A P ++ I + + G L Sbjct: 16 SRAINRTDFFRLLKAAAQHYHFDNFALARISEA-SAPFGERDIVITNVAERRVGLFIATL 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 E G P+ ++ S L G+ F P+ + Sbjct: 75 REALGTTRAKSAQFLATPV--HGRSAQSDTYPSDLLFNEFRSGVFLF----IPLFTPEGR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ + E I + ++ E + LT+RE+ ++ +G Sbjct: 129 RYCLVLSGEREEPDQGEIADMLLDAMRIFDKLYE-EILTPEMSGRLTQRESEIVKWTSEG 187 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|123441908|ref|YP_001005891.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088869|emb|CAL11676.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 244 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +++ + ++ +N + NY LD D Sbjct: 13 EDIKNYIQRRIKAYGDLRYSYLVMNKKTPL-----HPTIISNYPLDWVKKYKKNSYHLID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + P W +S+ +L G F + + + Sbjct: 68 PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNI 126 Query: 135 T-SEFLMLANEVIIEA-----HGACYQVITDFLEL-------FKKRSSAARN--LTERET 179 + ++ + IE L L + R+ + RE Sbjct: 127 SNGSDDSISFDESIEINKEKIQMLLILTHEKMLGLYQSNSDKNENRNPKIERDIFSPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EI+ LG+ TV ++G+ KL +N AI I I Sbjct: 187 EILYWASVGKTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241 >gi|117619760|ref|YP_858670.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561167|gb|ABK38115.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 203 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 57/228 (25%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K+ ++ +L +++ F + + ++ + +N D + Sbjct: 15 KAKKTSDIQQQLERFSHQM---GFDYFRLLIIFPISMQKSHVALFNNCPTSWFDAYSERH 71 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D +F PI W + + Sbjct: 72 YLTQDPVVFLGLKQTQPIFWNKLDC---------------------------------DS 98 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCLQLAG 186 ++ S + L+L K R + LTE RE CL A Sbjct: 99 PWLPSAS------------------YIFNSALQLIKSRPDLMKYLTELSDREKECLFWAS 140 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA LG+S TVN +L T K D+ NR QAIAK+I G I Sbjct: 141 EGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 188 >gi|37524335|ref|NP_927679.1| hypothetical protein plu0320 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783758|emb|CAE12615.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 242 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 86/234 (36%), Gaps = 23/234 (9%) Query: 16 ELSPRLHL-IQNRIK-ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 ++ P I I F+L+++ FP + + +NY D+ Sbjct: 17 DVDPHFVAEICELINKISGFSLFSLLLKARFPISNREVYFFNNYHESWRDLYIEKKYWMI 76 Query: 74 DDFLFHFNSGLLPI------IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D L P+ IW +S+GQ + +GI F + Sbjct: 77 DPVL-----NFRPVPPSFSKIWDLDFFS---KSNGQELWYVNQKYGFRSGITFGLPAFSG 128 Query: 128 KNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 G + + NE I+ + + +T + + + + RE Sbjct: 129 TYGIFSVAGKDGPIDNETMYKCSGEILGVYIRIIRYLTSHTKYLQSFYIDETSFSNRELE 188 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ DG TS EI+ + ++ TV+ +L + KLD N+ QAIAKA GYI Sbjct: 189 VLRYTADGMTSIEISSTICVTKSTVDFHLMNIVKKLDCKNKFQAIAKAALLGYI 242 >gi|163758741|ref|ZP_02165828.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284031|gb|EDQ34315.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 239 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + + + + + + + + Y + D Sbjct: 21 VEEAVFAFRAEYQVAHATYHLAQTTISALDS---AYVRTTYSAEWVSRYLQRNYVDIDPV 77 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L LP W ++ + L L +G + P+ + + S Sbjct: 78 LKEGVQRQLPFDWSELEMSAAVLP---LFEDALAHGLGPSGYSIPIIDKNFRRALLSINS 134 Query: 137 EFLMLANEVIIEAHGACYQ-----VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 A ++ H A + + ++ + A +L+ RE CL LA G Sbjct: 135 FETGEAWSDLVNRHKAAWAEAAFLIHDMAMKEIHGGNDQALHLSPREIECLTLAARGKDH 194 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++IA LGLS HTV YL SA KL +VN QAIA+AIR I Sbjct: 195 KDIALILGLSGHTVQGYLKSARHKLGSVNIPQAIAEAIRSRII 237 >gi|222066056|emb|CAX21483.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 10/222 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + + + + +N + + + NY + + D Sbjct: 19 QRLFDIAVHLAQNLDMVYLGLNVRIQIATQTPRLYLYSNYPKEWIERYQRDEFYKQDAAA 78 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 +S +P++W + + G + H + Sbjct: 79 NASHSSTMPVLWNDDLYREAPK-----FRQAACQYGLCHGWTQSLHDLQHNESQISVARP 133 Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSE 192 + + + C+ + E +++RE L+ + G T+ Sbjct: 134 TGTIGITELYDKAGSVQWLCHTLHAVLGEYHLNALCPPQPKMSKRELEVLKWSAAGKTAA 193 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++A L LS TVN ++ S K A N+ A+A A G+I Sbjct: 194 DVACILSLSQSTVNFHIRSVITKTSAANKAGAVAIAALRGWI 235 >gi|209547895|ref|YP_002279812.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533651|gb|ACI53586.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 8/226 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + L NFAL I+ P ++ I + + G L Sbjct: 16 SRAINRTDFFRLLKSAAQHYNFDNFALARISET-SAPFGERDIVITNVAERRVGLFITTL 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 E G P+ +S++ E S + G+ F P+ + Sbjct: 75 KEALGTVRAKSAQFLATPVHGRSVRPEDY--RSDLVFNEFLSGVFLF----IPLFTPEGR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ + E I + ++ E + LT+RE ++ +G Sbjct: 129 RYCLVLSGERQEPDQSEIADMLLDAMRIFDKLYE-EILTQEMSGRLTQREQEIVKWTSEG 187 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|83593514|ref|YP_427266.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576428|gb|ABC22979.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 239 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 78/230 (33%), Gaps = 14/230 (6%) Query: 19 PRLHLIQNRIKARNFA-----LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L + A FA + A D I E N +D +I Sbjct: 10 AHLDAACRQAMALGFAAVLYDYSPVPRAHDGTLITPTILETRNLPVDMAEIWCKQGYYQI 69 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P +W +++ + + + + G+ P+R G Sbjct: 70 DPVQDAALLVSAPFVWSHEGDQSDVMARVLRAEHRPVLDYLRHRGLTRGVTVPIRCGEGA 129 Query: 129 NGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQL 184 + + + F S +LT RE CL L Sbjct: 130 LATFTAIAPSGAPFPPEDRLSSLGLLGQSFHDRVYPGFPAASHLCPVVHLTRRERECLAL 189 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T++EIA ++ SV TV +L +AT KL A NR QAIA+A + + Sbjct: 190 CGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARAAYYRLL 239 >gi|294664209|ref|ZP_06729588.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606021|gb|EFF49293.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 254 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 78/244 (31%), Gaps = 17/244 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62 G+ +LQ L L + + A F + +L+ + N D Sbjct: 9 GRDLQALQTLDSCLDRVFRNVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQ 68 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAG 117 + D P +W + + + R G Sbjct: 69 HVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGSCPGVEYVGGQHRQVTRYLCDSGMGTG 128 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSA 170 + P+ L + + EA +Q L ++R Sbjct: 129 VTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCH 188 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + Sbjct: 189 HIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMH 248 Query: 231 FGYI 234 + + Sbjct: 249 YRLL 252 >gi|294625280|ref|ZP_06703918.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600401|gb|EFF44500.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 254 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 78/244 (31%), Gaps = 17/244 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62 G+ +LQ L L + + A F + +L+ + N D Sbjct: 9 GRDLQALQTLDSCLDRVFRDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQ 68 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAG 117 + D P +W + + + R G Sbjct: 69 HVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGSCPGVEYVGGQHRQVTRYLCDSGMGTG 128 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSA 170 + P+ L + + EA +Q L ++R Sbjct: 129 VTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCH 188 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + Sbjct: 189 HIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMH 248 Query: 231 FGYI 234 + + Sbjct: 249 YRLL 252 >gi|4883696|gb|AAD31608.1|AF065246_2 conjugal transfer regulatory protein [Agrobacterium tumefaciens] Length = 234 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L I +A I + I + NY + D Sbjct: 21 LKTGLADIAEHFVFTGYAYLHIQH--------RHITAVTNYHREWQSTYFDKKLVALDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + +GI P+R S Sbjct: 73 VKRARSRKHIFTWSGEQERPSLSRDERSFYARAADFGIRSGITIPIRTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 + ++ + I+A A + + R++ L +E S L+ G T E Sbjct: 133 DKPVIDLDREIDAVAAASTIGQIHARISYLRTTPTAEDAAWLDPKEASYLRWIAVGMTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ G+ ++V L A + D ++ IA AIR I Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDVHSKAHLIALAIRRKLI 234 >gi|241203072|ref|YP_002974168.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856962|gb|ACS54629.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 8/226 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + L NFAL I+ A P ++ + + + G L Sbjct: 16 SRAINRTDFFRLLKSAAQHYNFDNFALARISEA-SAPFGERDVVITNVAERRVGLFITTL 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 E G P+ + + S + G+ F P+ + Sbjct: 75 KEALGTVRAKTAQFLATPV--HGRSAQPEVYPSDLVFNEFLSGVFLF----IPLFTPEGR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ + E I + ++ E + LT+RE+ ++ +G Sbjct: 129 RYCLVLSGERQEPDQSEIADILLDAMRIFDKLYE-EILTPEMSGRLTQRESEIVKWTSEG 187 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|78048691|ref|YP_364866.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926244|ref|ZP_08187599.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78037121|emb|CAJ24866.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543331|gb|EGD14759.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 254 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 76/247 (30%), Gaps = 15/247 (6%) Query: 1 MSENTLTGKKSSS-LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDL 59 + + + S L + + + ++ + + +L+ + N Sbjct: 8 LGCDLQALQTLDSCLDRVFRDVCALG--FQSLVYDYAPVPLSLEGALITPTVFMQRNAPG 65 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLP 114 D + D P +W + + R Sbjct: 66 DMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCAGVEYVGGQHRQVTRYLCDSGM 125 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSS 169 G+ P+ L + + EA + EL + + Sbjct: 126 GTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQVLPFLLLAHAFQARAQELLEPQER 185 Query: 170 AAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + Sbjct: 186 RCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVR 245 Query: 228 AIRFGYI 234 + + + Sbjct: 246 GMHYRLL 252 >gi|218682848|ref|ZP_03530449.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 230 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 85/234 (36%), Gaps = 5/234 (2%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 M L G ++ SL + L + + + L S+ D + + + Sbjct: 1 MLSAELAGARTRSL--FAQALGRVSSAFGLSHATLMHAPSSEDLLL--RPLLIETSLPAA 56 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + G F +P +W + + ++ L AGIA Sbjct: 57 YIREFDRAHMMRGCPFGLRLRESAVPPVWH-LNDAVNGQAFPAELRALMLRHAIPAGIAM 115 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P + F E LA + E + + + + L+ RE Sbjct: 116 PTITADGQRLVFWFCGERAALAQSEVNELAMIILHALDAYNAVKRNEECTHNALSIRELE 175 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 176 VVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 229 >gi|116253270|ref|YP_769108.1| LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257918|emb|CAK09016.1| putative LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 238 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 3/224 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + L I + L S D + + + + Sbjct: 17 ARTRSLFAQALGRISTAFGLSHATLMHAPSPEDLLLKP--LLIESSLPAAYVRDFDRAHM 74 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 G F + +P W + + + ++ L AG+A P + Sbjct: 75 MRGCPFGVRLRASAVPPAWH-LNDASNGQAFPAELRALMLRHAIPAGVAMPTTAADGQRL 133 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 F E L I E + + + + A L+ RE ++ G T Sbjct: 134 VFWFCGERAALGQSEINELVMIILHALDAYNAVKRNEECAHNALSNRELEVVRWTAQGKT 193 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 194 SIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 237 >gi|134291173|ref|YP_001114942.1| response regulator receiver protein [Burkholderia vietnamiensis G4] gi|134134362|gb|ABO58687.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 260 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 16/228 (7%) Query: 16 ELSPRLHLIQNRIKARNFALYTIN-SALDFPRRQQLI---CELHNYDLDSGDIPNILIET 71 ++S + + + F Y + AL R + I +Y + Sbjct: 39 DISSLSDSLGDAVLPLGFPCYAVTRIALTCYRSRPSISMEAICTHYPNNWVQHYLQHNYG 98 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + P W I + + E + + G++ P+R Sbjct: 99 AVDPVHRAAFTSSGPYRWADITDLSQNE---RHVLAEACDAGLKNGLSIPIREIGGSILL 155 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAG 186 + + + + VI++ L R + L+ R+ CL Sbjct: 156 INLSGPSSRINTGTKRQL----ASVISNLFRLELDRLAPPHPNEFIQLSPRQRQCLSWVA 211 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS +I L +S HTV ++ A L+ +RI A A +G + Sbjct: 212 QGKTSSDICMILKISRHTVEYHITEAMRVLNVNSRIAAAVIASNYGLL 259 >gi|294637446|ref|ZP_06715736.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC 23685] gi|291089387|gb|EFE21948.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC 23685] Length = 239 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 17/232 (7%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 Q++ + + FA +N + I + NY + + Sbjct: 9 AQDIKRFIDQSLSYYGQLQFAYLLLNK-----KNPTEITIISNYPDEWVTLYKEHHYQQI 63 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + + P +W + + L G F + ++ + Sbjct: 64 DPVVIYALRRVSPFLWDEKI-TVNAKLNLSKIFSLAKKYQVNKGYTFVLHDADNQLAMLS 122 Query: 134 FTSEFLMLA--NEVIIEAHGACYQVITDFLELFKKRSSAARNL---------TERETSCL 182 + L+ + F+ ++ N+ + RE L Sbjct: 123 LMVDDHSLSIVEQNQGALQMLLINAHERFMTGQRQLQVQQHNIKSNNMENIFSARENEIL 182 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T +EIA LG+ TV ++G+ KL +N AI + I Sbjct: 183 YWASMGKTYQEIALILGIKSGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 234 >gi|110633760|ref|YP_673968.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284744|gb|ABG62803.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 241 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 11/232 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + S + + + L+++ + + + + +N + P + + Sbjct: 14 VETVRSAKNIEEAIFLLRDGLGLAHVSFH-LNVSGAAPLDYPYVR--TTLPSQWISRYVL 70 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + S L P W ++ E + + G + P F Sbjct: 71 RTYVGHDPVMREGFSSLRPFSWHELEMS---EKEREFMEDARSHGIGAQGYSIPTVDRFS 127 Query: 128 KNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCL 182 + + T++ + I H + L + L RE CL Sbjct: 128 RRSLLSLTADLDLGLWAGFIRRHASSVIEISQVLHQKALNELGIGEPSGATLAPRERECL 187 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G S++IA L LS +TV +YL +A KL QA+A A R I Sbjct: 188 LWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRII 239 >gi|222149400|ref|YP_002550357.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736383|gb|ACM37346.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 241 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 3/234 (1%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSG 62 TL + ++++ +++ +A + +I A L + ++ G Sbjct: 7 QTLLSTEITAMESREHCAEILRTVAQAFGLSHGSILLAPCATDVHLLPLVMETTLPMEFG 66 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV--IESSGQLSVRLEGGLLPFAGIAF 120 + + F +LP W E E L G+ F Sbjct: 67 HEFDRHQFVKFCPVVKKFAGSILPRTWDMKFREPNDMAEEWPPAMRDLMMRFKLIVGVVF 126 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 + ++ F + L+ + E V + L + L+ RE Sbjct: 127 IFPSLDSRLYFMRFDGDRSPLSQCEVNELGMLAMAVFDTYDRLRRTELMNVDVLSVRELE 186 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G TS EI + L LS HT+NAY+ +A KLD VNR Q +AKAIR I Sbjct: 187 VLRWTAQGKTSVEIGQILSLSDHTINAYMTTAMKKLDCVNRTQLVAKAIRLKLI 240 >gi|207722200|ref|YP_002252637.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] gi|206587375|emb|CAQ17958.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] Length = 459 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 ++ + P + + Y D + S I+W Sbjct: 262 YSARMPLPVSKPAVAIFDTYPAGWMQHYQANGFLDIDPTVRAGASSGDMIVWP-----VS 316 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGAC 153 I G+A G + L + H Sbjct: 317 IRDEAARLWSDARDAGLNVGVARSSWTAHGAFGLLTLARHADPLTAAELGRLSIATHWLA 376 Query: 154 YQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 T + N LT RE L G+G T+ EI + L +S TVN ++ + Sbjct: 377 NLAHTLMSPFLVPKLVPESNAVLTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNN 436 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 +KL A N++QA+ KAI G I Sbjct: 437 VLLKLAATNKVQAVVKAIATGLI 459 >gi|330973265|gb|EGH73331.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 240 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + + L L N D GD Sbjct: 21 TISELDGQTAIENALEWLRRECNSERAMFFQFKGPL------LLTFITSNVDEAWGDAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ + + + L I++ Sbjct: 75 QHDLIMQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V + + E ++ + + +R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|190890329|ref|YP_001976871.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695608|gb|ACE89693.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 234 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 8/226 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + L NFAL I+ A P ++ + + + G L Sbjct: 16 SRAINRTDFFRLLKAAAQHYHFDNFALARISEA-SAPFGERDVVITNVPERRVGLFIATL 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 E G+ P+ E S +L G+ F P+ + Sbjct: 75 REALGNVRAKSAQFLATPV--HGRSAEPAAYPSDRLFNEFRSGVFLF----IPLFTPEGR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ + I + ++ E + LT+RE ++ +G Sbjct: 129 RYCLVLSGVREEPDQGEIADMLLDAMRIFDKLYE-EILTHEMSGRLTQREAEIVKWTSEG 187 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|66045102|ref|YP_234943.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63255809|gb|AAY36905.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 240 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + + L L N D GD Sbjct: 21 TITELDGQTAIENALEWLRRECNSERAMFFQFKGPL------LLTFITSNVDEAWGDAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ + + + L I++ Sbjct: 75 QHDLIMQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V + + E ++ + + +R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|222080193|ref|YP_002540056.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738838|gb|ACM39617.1| transcriptional regulator [Agrobacterium vitis S4] Length = 227 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L I + +A I + I + NY + + D Sbjct: 14 LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHPEWQSVYFDKKFDALDPV 65 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W E + + +GI P++ S Sbjct: 66 VKRARSRKHIFTWSGEHERPTLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 125 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 E ++ + I+A A + + R++ L +E + L+ G T E Sbjct: 126 EKPVIDLDREIDAVAAAGTIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTME 185 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ G+ ++V L A + D ++ A AIR I Sbjct: 186 EIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 227 >gi|116049068|ref|YP_792130.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584289|gb|ABJ10304.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 243 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 4/234 (1%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59 + ++ +K+++ + + + R+ + ++ +L ++ Sbjct: 8 LFDSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAE 67 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 H P W E + ++ + L G+ Sbjct: 68 GRSAQERD-AYLLHCPVTRHILELDEPFFWSKNPSEDPARMTYRIVRGVR-DLGQVNGMQ 125 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178 PV G V F E L L + A C + L S+ A+ L+ERE Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 >gi|325919969|ref|ZP_08181953.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325549544|gb|EGD20414.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 254 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 17/244 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62 G+ +L L+ L + + A F + +++ + N D Sbjct: 9 GRDLQALHTLNACLDRVFRDVCAFGFKSLVYDYAPVPLSMEGALITPSVFMQRNAPGDMR 68 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-----IESSGQLSVRLEGGLLPFAG 117 + D + P +W + + + R G Sbjct: 69 HVWCEHGYYQHDPVQQRATRRMTPFVWSYRTDGNQEGVEYVGGQHRQVTRYLCDSGMGTG 128 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAAR 172 + P+ L + + + EA + EL + Sbjct: 129 VTVPLHLPGGAFATFSGAVDAVAAEAPRLAEAQLSPFLLLAHAFQARAQELLDPQERRCH 188 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ + + Sbjct: 189 HIALTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMH 248 Query: 231 FGYI 234 + + Sbjct: 249 YRLL 252 >gi|15965591|ref|NP_385944.1| putative transcription regulator HSL-dependent protein [Sinorhizobium meliloti 1021] gi|307302711|ref|ZP_07582467.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318559|ref|ZP_07597993.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15074772|emb|CAC46417.1| Quorum sensing system, AHL autoinducer-binding, luxR family, regulator of sinI [Sinorhizobium meliloti 1021] gi|306895899|gb|EFN26651.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306903075|gb|EFN33666.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 245 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 15/229 (6%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L++ + A P ++ H + + +I D Sbjct: 20 ADPERFFALMRRTFNISHLLYL---EAESLPDGLRICRLHHTFGAYAAEIYAARGLYRID 76 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGYVI 133 L G+ P+ W + + + + G+A P+ + + Sbjct: 77 PILKLALGGVRPVEWATARRR---FPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLA 133 Query: 134 FTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLA 185 + + + + A LE + LT RET L + Sbjct: 134 IGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWS 193 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA LG+S TV ++ +A KL+ V+ QA+A A+R I Sbjct: 194 AAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALI 242 >gi|16519697|ref|NP_443817.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a [Sinorhizobium fredii NGR234] gi|2495425|sp|P55407|TRAR_RHISN RecName: Full=Probable transcriptional activator protein traR gi|7465594|pir||T02771 probable transcription activator traR - Rhizobium sp. plasmid pNGR234a gi|158429605|pdb|2Q0O|A Chain A, Crystal Structure Of An Anti-Activation Complex In Bacterial Quorum Sensing gi|158429606|pdb|2Q0O|B Chain B, Crystal Structure Of An Anti-Activation Complex In Bacterial Quorum Sensing gi|2182351|gb|AAB91637.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a [Sinorhizobium fredii NGR234] Length = 236 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 66/219 (30%), Gaps = 12/219 (5%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L + FA + + H+Y I D L Sbjct: 26 ALRSFAHSCGYDRFAYLQKDGTQ--------VRTFHSYPGPWESIYLGSDYFNIDPVLAE 77 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 W + S + G+ PV + + F S Sbjct: 78 AKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFASPER 137 Query: 140 MLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + +++ A ++ +L K + + L+ RE CL A G T+ A Sbjct: 138 KVDISGVLDPKKAVQLLMMVHYQLKIIAAKTVLNPKQMLSPREMLCLVWASKGKTASVTA 197 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++ TV YL A KLDA + Q +A A G + Sbjct: 198 NLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV 236 >gi|260462698|ref|ZP_05810904.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319782267|ref|YP_004141743.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259031604|gb|EEW32874.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317168155|gb|ADV11693.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 240 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 67/218 (30%), Gaps = 2/218 (0%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 P L + ++ F ++ ++ + EL+ + D Sbjct: 21 PLLDDVLLTVRNLGFEHLILSGVPLGGQKLAPMVELNGWPEGWFKRYVEAEHAAVDGVCI 80 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + L P +W + + + +G A P+ H + F S Sbjct: 81 YSAKTLKPFLWADVPAKWSDTKGSRRVAGEATEFGISSGFAVPMLSVHHWQSVLSFASSA 140 Query: 139 --LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L+ ++ L LTERE L A G TS E ++ Sbjct: 141 KVCALSPREEVQLVTMAVYAGMAIQALSHGDEVEEGLLTEREKEVLLWAAAGKTSSETSQ 200 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LGL+ TV + A QAI +A+R I Sbjct: 201 ILGLAERTVKWHATRAREAFGVATTTQAIVEAVRRRMI 238 >gi|242237587|ref|YP_002985768.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703] gi|242129644|gb|ACS83946.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech703] Length = 236 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 70/228 (30%), Gaps = 13/228 (5%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L +A +N + + NY + + Sbjct: 12 RAAIQNHLARNLQCYSGLKYAYLIMNKRFPTD-----MVIISNYPSEWVNTYKKRNYNSI 66 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + + P W QL G F + + + Sbjct: 67 DPVILTAVNKVSPFSWNDNMVRNSRLKLPQLF-EHARQYDICNGYTFVLHDQNNHMATLS 125 Query: 134 FTSEFLML-----ANEVIIEAHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAG 186 ++ + ++ + + ++ + EL + R + ++ +ERE L A Sbjct: 126 LAADNIENMIHGNQEKLQMLLIATHEKTLSLYRELAESRQHRSNDMLFSERENDILYWAS 185 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T +EIA LG+ TV ++G+ KL N AI I I Sbjct: 186 MGKTYQEIALILGIKTSTVKFHIGNVVRKLGVTNAKHAIRMGIEMNLI 233 >gi|85708570|ref|ZP_01039636.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] gi|85690104|gb|EAQ30107.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] Length = 236 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 72/227 (31%), Gaps = 7/227 (3%) Query: 13 SLQELSPRLHLIQNRI---KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +L E+S L ++++ A + + + A D + H + + + Sbjct: 10 TLVEISDVLTYVRDQAIKAGAARMSYH-VTPAFDQQTSRTAAVYAHGFSDEWMALYAKEE 68 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + WQ + G P+ ++ Sbjct: 69 FRLTDPIPGRVMQFGSLMTWQDAMSWQHNTPDQEAYFAKMKEYDLIHGFGIPLYGRNARD 128 Query: 130 GYVIFT--SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 Y F +A E I + L + + A L+ERE L A Sbjct: 129 AYASFDFLKHVDDVAPESIGMIRSLSQVAHQRVVILVEHKLD-APALSEREVEVLTWAAR 187 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + IA L +S T Y KLD +R+ A+ KA+R G + Sbjct: 188 GKSLSAIATILDISPDTAKTYSKRIYAKLDVSDRVGAVVKALRMGLV 234 >gi|325917294|ref|ZP_08179515.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536514|gb|EGD08289.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 254 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 12/214 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + + +++ + N D + D P +W Sbjct: 39 YDYAPVPLSMEGGLITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98 Query: 93 QEETVIE-----SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 + + + R G+ P+ L + + + + Sbjct: 99 TDGNRPGVEYVGAQHRQVTRYLCDSGMGNGVTVPLHLPGGAFATLSGAVDAVAAEAPRLA 158 Query: 148 EAHG-----ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200 EA + EL + LT RE CLQ + G T++ IA L Sbjct: 159 EAQLSPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTAKSIAAALNR 218 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TVN +L SA KL A NR++A+ + + + + Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|150396769|ref|YP_001327236.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150028284|gb|ABR60401.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 78/229 (34%), Gaps = 14/229 (6%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L++ + A P ++ H + + ++ + D Sbjct: 20 ADPERFFALMRRTFNIAHLLYL---EAESLPDGLRICRLHHTFGAYAAEVYAVRGLHRID 76 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L G+ P+ W + L V E L G+A P+ + + Sbjct: 77 PILKLALGGVRPVEWATA--RRRFPECEPLFVAAEEIGLSTEGVALPLPSPAGRMALLAI 134 Query: 135 TSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLA 185 ++ + + + A LE + LT RET L + Sbjct: 135 SANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGAMEDERDLRLTGRETEVLTWS 194 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA LG+S TV ++ +A KL+ V+ QA+A A+R I Sbjct: 195 AAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALI 243 >gi|330940036|gb|EGH43227.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] Length = 240 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + + + L N D GD Sbjct: 21 TISELDGQTAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDEAWGDAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ + + + L I++ Sbjct: 75 QHDLITQDPVIRCYRNQLGFLNWQEAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V + + E ++ + + +R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|9297035|sp|O54452|RAIR_RHIET RecName: Full=Transcriptional activator protein raiR gi|2897879|gb|AAC38173.1| RaiR [Rhizobium etli] Length = 242 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 10/196 (5%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 A + L+ Y + D + G LP+ W + Sbjct: 42 AYGSPCDLAGATDSNPLLML--TYPPEWVKQYRDRDYFSIDPVVRLGRRGFLPVEWSASG 99 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-----EVIIE 148 ++ + + G+ PVR + TS + + + Sbjct: 100 WDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRD 157 Query: 149 AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L ++ + L+ RE CL++ +G +++I +L +SV V Sbjct: 158 LQFLAHHLHDRAMVLSGMRKVADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQL 217 Query: 208 YLGSATVKLDAVNRIQ 223 YL SA KL + Sbjct: 218 YLASARRKLTVATTSE 233 >gi|103488066|ref|YP_617627.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978143|gb|ABF54294.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis RB2256] Length = 250 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 5/226 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +SS+ L L + FA ++ + +H+Y D+ Sbjct: 16 ASSIDHLHEALTRATRDMGFDRFA---LSLEIGCGADSSTSLLIHDYPASWADVYIGFNL 72 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D +L W++I + + + + G P L G Sbjct: 73 AASDPVRRAAERSVLGFGWRNILDLVPMTEIEKTTFETGRRHGLADGFTVPRHLPGDVTG 132 Query: 131 YVIF-TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDG 188 F T + + ++I A I +L S + + LT+R+ C+ A G Sbjct: 133 SCSFVTGLGKSIPHAMLIVAEMLGAMAIASARQLSGWTSRSVQPRLTDRQRDCVLWAARG 192 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T EI+ L +S TV +L A + + R I A+ G I Sbjct: 193 KTDWEISRILDISHETVIQHLKDARERYETHKRASLILYALYDGLI 238 >gi|302185070|ref|ZP_07261743.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 240 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 74/228 (32%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + + + L N D G+ Sbjct: 21 TITELDGQTAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDHAWGEAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ + + + L I++ Sbjct: 75 QHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V +A + E ++ + + ++R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVARTISAEQKYLMSSLMPVLHSVARGLKFSSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|166711196|ref|ZP_02242403.1| transcriptional regulator AhyR/AsaR family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 254 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 74/233 (31%), Gaps = 14/233 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L + + + ++ + + +++ + N D + Sbjct: 22 LDRVFRDVCALG--FQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVWCEHGYYQH 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P +W + + R G+ P+ L Sbjct: 80 DPVQQRAARRTTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGA 139 Query: 129 NGYVI-----FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181 +E L LA ++ + EL + LT RE C Sbjct: 140 FATFSGAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHYIALTRREREC 199 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + + Sbjct: 200 LQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|313106105|ref|ZP_07792362.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310878864|gb|EFQ37458.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 243 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 4/234 (1%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59 + ++ +K+++ + + + R+ + ++ +L ++ Sbjct: 8 LFDSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAE 67 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 H P W E E VR L G+ Sbjct: 68 GRSAQERD-AYLLHCPVTRHILELDEPFFWSKSPSEDP-ERMTYRIVRGVRDLGQVNGMQ 125 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178 PV G V F E L L + A C + L S+ A+ L+ERE Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 >gi|27802473|gb|AAO21111.1| BisR [Rhizobium leguminosarum bv. viciae] Length = 246 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 72/219 (32%), Gaps = 10/219 (4%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L Q + A Y + D + Sbjct: 26 ALDEFQQHYPVDFVTFH---LARTIVDSVDAPFVRTTYPDSWVSRYLLNDYINVDPIIRE 82 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--- 136 S LP W+ I + +S+ Q V E + G++ P+ ++ I + Sbjct: 83 GFSRQLPFDWREID---IPDSAHQFMVDAEMHGIGGNGVSIPIVDKSRRSLLSINSQMSD 139 Query: 137 -EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 E+ + + + E + + + + L RE CL A G S++IA Sbjct: 140 EEWTAIERQFLPEWTELGFLLHRKAVFELHGENDPVPALGTREVECLHWASRGKDSKDIA 199 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LGLS HT YL SA KL AIA A+ I Sbjct: 200 EILGLSEHTARGYLKSARYKLGCPTLSAAIAHAVHLNLI 238 >gi|209550397|ref|YP_002282314.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536153|gb|ACI56088.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 241 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 77/224 (34%), Gaps = 3/224 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + L + + L S D + + + + Sbjct: 20 ARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKP--LLIESSLPAAYIKEFDRAHM 77 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 G F +P W + + ++ L AG+A P + Sbjct: 78 MRGCPFGLRLRESAVPPAWH-LNDAANGQAFPAELRALMLRHAIPAGVAMPTIAANGQRL 136 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 F E L + E + + + + A L+ RE ++ G T Sbjct: 137 VFWFCGERAALGQSEVNELAMIILHALDAYNAVKRNEECAHNALSTRELEVVRWTAQGKT 196 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 197 SIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|218892898|ref|YP_002441767.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218773126|emb|CAW28938.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 243 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 4/234 (1%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59 + ++ +K+++ + + + R+ + ++ +L ++ Sbjct: 8 LFDSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAE 67 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 H P W E E VR L G+ Sbjct: 68 GRSAQ-QRDAYLLHCPVTRHILELDEPFFWSKSPSEDP-ERMTYRIVRGVRDLGQVNGMQ 125 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178 PV G V F E L L + A C + L S+ A+ L+ERE Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 >gi|218515768|ref|ZP_03512608.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 234 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 8/226 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + + L NFAL I+ A P ++ + + + G L Sbjct: 16 SRAINRTDFFRLLKAAAQHYHFDNFALARISEA-SAPFGERDVVITNVPERRVGLFIATL 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 E G+ P+ E S +L G+ F P+ + Sbjct: 75 REALGNVRAKSAQFLATPV--HGRSAEPAAYPSDRLFNEFRSGVFLF----IPLFTPEGR 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ + I + ++ E + LT+RE ++ +G Sbjct: 129 RYCLVLSGVREEPDQGEIADMLLDAMRIFDKLYE-EILTHEMSGRLTQREADIVKWTSEG 187 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|294012984|ref|YP_003546444.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676314|dbj|BAI97832.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 248 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 6/219 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + ++ + +I ++ F + + +D + +HNY D Sbjct: 9 QVRTRDDMGSVMRVIAEQL---GFQYFALTQHVDVVAAGSGVIHIHNYPDRWADFYAANA 65 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + W + + S + G P +G Sbjct: 66 LGITDPVHRACHMTSWGFRWTQMPTLIPLTSGDHRHLARGRQAGIGDGFTIPSNIGGQPP 125 Query: 130 GYVIFTSE-FLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAG 186 G F +E L + ++ A L +R+ A +T+R+ C+Q A Sbjct: 126 GSCTFANEGDRPLREDRLLLAQLLGNYAFDAARRLWSMPRRAMTAPLITDRQRDCVQWAA 185 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 G + E ++ L +S TV +++ A + RI + Sbjct: 186 RGKSDWETSQILDISRETVTSHIKDACARYQVNKRILLV 224 >gi|271498689|ref|YP_003331714.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270342244|gb|ACZ75009.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 20/232 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + L+ +A +N + + NY + +I + D Sbjct: 15 IQNYLNRKLKSYGDLKYAYLIMNKKKPTD-----VVIISNYPSEWVEIYRNNNYQHIDPV 69 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + + P W + ++ L G F + + + F Sbjct: 70 ILTAINRISPFSWDDDLVISSKLKFSRIFN-LSKEYDIVNGYTFVLHDPANNLATLSFMF 128 Query: 137 EF-LMLANEVIIE-----AHGACYQVITDFLELFKKRS-------SAARNL-TERETSCL 182 E E I++ L+++ S S NL ++RE L Sbjct: 129 EENRSGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNRNNSKSQEPNLFSQRENEIL 188 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T +EIA LG++ TV ++G+ KL +N AI + I Sbjct: 189 YWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|222080291|ref|YP_002540155.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738936|gb|ACM39715.1| transcriptional regulator [Agrobacterium vitis S4] Length = 230 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L I + +A I + I + NY + + D Sbjct: 17 LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHPEWQSVYFDKKFDALDPV 68 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W E + + +GI P++ S Sbjct: 69 VKRARSRKHIFTWSGEHERPTLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 128 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 E ++ + I+A A + + R++ L +E + L+ G T E Sbjct: 129 EKPVIDLDREIDAVAAAGTIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTME 188 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ G+ ++V L A + D ++ A AIR I Sbjct: 189 EIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRRLI 230 >gi|10955045|ref|NP_059701.1| hypothetical protein pTi_029 [Agrobacterium tumefaciens] gi|6094514|sp|P33905|TRAR_AGRTU RecName: Full=Transcriptional activator protein traR gi|3377775|gb|AAC28121.1| traR [Agrobacterium tumefaciens] gi|81176493|gb|ABB59515.1| TraR [Agrobacterium tumefaciens] Length = 234 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L I + +A I + I + NY D Sbjct: 21 LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHRQWQSTYFDKKFEALDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W E + + +GI P++ S Sbjct: 73 VKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 + ++ + I+A A + + R++ L +E + L+ G T E Sbjct: 133 DKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ G+ ++V L A + D ++ A AIR I Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 >gi|89068113|ref|ZP_01155530.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola granulosus HTCC2516] gi|89046352|gb|EAR52409.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola granulosus HTCC2516] Length = 228 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 15/217 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 +++R++ R+ + + + + Y + D + Sbjct: 1 MRDRLRVRHCVYHWLRAEGEE-------YRCGTYSKHWRRRYDRRCYRRIDPVVIDGFRR 53 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P+ W+ + + + + G + P+R + T A Sbjct: 54 FDPVDWKELDWSGKAARAYR--RDALDHGVGSQGFSIPLRGPNGQFALFSVTDTTSDAAW 111 Query: 144 EVI-----IEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + + LEL + +R+L+ RE L GY +A+ Sbjct: 112 AEFTAARQPDLILVGHYLNRKALELAGPTLPAPSRSLSPREIEALTYLAQGYGRGRVADV 171 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S HT+ AY+ SA KL A N A+A+A G I Sbjct: 172 LSISEHTLRAYIESARFKLGAANTTHAVARAAMEGLI 208 >gi|241518233|ref|YP_002978861.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862646|gb|ACS60310.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 236 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 76/229 (33%), Gaps = 12/229 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ L L + FA +++A F + Y + + Sbjct: 16 AAANEHSLKTALSDVARAHGFERFAYLNLHTAKSFA--------VSTYQKEWQSLYFSRS 67 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + W + E + + +G++ P+ GF + Sbjct: 68 YMAIDPVVTAAKRLRRAFRWSADFERRRADDGIKEFYDTAAEFGIRSGLSIPIWTGFGQF 127 Query: 130 GYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLA 185 + S L + ++ GA L + R ++RE CL+ A Sbjct: 128 AILTLASARHLETSGPDDLDTVGAAGAAALIHARLQGTTTPTQRPDFIFSDREALCLRWA 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G IA+ GL+ HTV L KL + QA+A A RFG I Sbjct: 188 AEGLPMHSIADVTGLTYHTVRWDLDRVKAKLGVYTQKQAVAVASRFGLI 236 >gi|190892823|ref|YP_001979365.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190698102|gb|ACE92187.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|327189482|gb|EGE56638.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 241 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 77/214 (35%), Gaps = 2/214 (0%) Query: 22 HLIQNRIKARNFALYTI-NSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 + A A T+ ++ + + + + G F Sbjct: 28 QALGRVATAFGLAHATLMHAPSPEDLLLKPLLIESSLPAAYVRDFDRANMMRGCPFGLRL 87 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 +P+ W + + ++ L AG+A P + F E Sbjct: 88 RESAVPLAWH-LNDVVNGQAFPAELRALMLHHAIPAGVAMPTIAVDGRRLVFWFCGERAA 146 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L + E + + + + SA L+ RE ++ G TS EI + L L Sbjct: 147 LGQSEVNELAIIILHALDAYNTVRRNEESAHNALSARELEVVRWTAQGKTSIEIGQILTL 206 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 207 SDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|86358681|ref|YP_470573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282783|gb|ABC91846.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 241 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 2/214 (0%) Query: 22 HLIQNRIKARNFALYTI-NSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 + A + T+ ++ + + + + G F Sbjct: 28 QGLGRVSAAFGLSYATLMHAPSPEDLLLKPLLIESSLPAAYVRDFDRANMMRGCPFGVRL 87 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 +P+ W + + ++ L AG+A P + F E Sbjct: 88 RESAVPLAWH-LDDTVNGQAFPAELRALMLRHAIPAGVAMPTIAVDGRRLVFWFCGERAA 146 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L + E + + + + +A L+ RE ++ G TS EI + L L Sbjct: 147 LGQSEVNELAIVILHTLDAYNAVRRNEENAHSALSARELEVVRWTAQGKTSIEIGQILTL 206 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 207 SDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|15596333|ref|NP_249827.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100589|ref|ZP_01364507.1| hypothetical protein PaerPA_01001614 [Pseudomonas aeruginosa PACS2] gi|254239506|ref|ZP_04932828.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192] gi|9947056|gb|AAG04525.1|AE004543_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126192884|gb|EAZ56947.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192] Length = 243 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 81/234 (34%), Gaps = 4/234 (1%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59 + ++ +K+++ + + + R+ + ++ D +L ++ Sbjct: 8 LFDSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPDEDELIDELFFVHGDWAE 67 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 H P W E E VR L G+ Sbjct: 68 GRSAQERD-AYLLHCPVTRHILELDEPFFWSKSPSEDP-ERMTYRIVRGVRDLGQVNGMQ 125 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178 PV G V F E L L + A C + L S+ A+ L+ERE Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 >gi|238786137|ref|ZP_04630091.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] gi|238712965|gb|EEQ05023.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] Length = 245 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 66/236 (27%), Gaps = 22/236 (9%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +++ + ++ +N + NY LD D Sbjct: 13 EDIKNYIQRRIKAYGDLRYSYLVMNKKTPL-----HPAIISNYPLDWIKEYKKNSYHLID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + P W +S+ L G F + H + Sbjct: 68 PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFNLAREYNIINGYTFVLHDNNHNMATLNI 126 Query: 135 T-SEFLMLANEVIIEA-----HGACYQVITDFLELFK----------KRSSAARNLTERE 178 + + + IE L L++ + ++ + RE Sbjct: 127 SNGNDDSIYFDESIEINKEKIQMLLILTHDKMLGLYQKNNNENKELGRSAAEREIFSPRE 186 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA LG+ TV ++G+ KL +N AI I I Sbjct: 187 NEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242 >gi|296161870|ref|ZP_06844671.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295887889|gb|EFG67706.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 262 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 70/231 (30%), Gaps = 9/231 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDSGDIP 65 + + ++ + + F Y I+ S RR L Y + Sbjct: 33 RLACATDIPSLVESFGHAAGKLGFPHYVISRVTRSRSTCARRTALEMIGARYPQEWVRHY 92 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D P W I + + + + AG++ P+ Sbjct: 93 QHRDYASTDPVHRAAFLQSAPYRWHDI---IGLSKAERRLLDEAREAGLPAGLSVPLHQS 149 Query: 126 FHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQ 183 + + A+ Q + L S AA LT R+ CL Sbjct: 150 DGSILLFNLSGPLHSVNDAINSRLAYLISAQFHFELHRLASMPSRRAAHLLTARQLECLT 209 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI E LG S +TV+ ++ A L+ +R A A G I Sbjct: 210 WVARGKTSAEIGEILGRSHYTVDYHIKEAMEALNIRSRTAAAVHATVHGII 260 >gi|58580891|ref|YP_199907.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425485|gb|AAW74522.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae KACC10331] Length = 277 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 14/233 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L + + + ++ + + +++ + N D + Sbjct: 45 LDRVFRDVCALG--FQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVWCEHGYYQH 102 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P +W + + R G+ P+ L Sbjct: 103 DPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGA 162 Query: 129 NGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181 + L LA ++ + EL + LT RE C Sbjct: 163 FATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHHIPLTRREREC 222 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + + Sbjct: 223 LQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 275 >gi|218506954|ref|ZP_03504832.1| transcriptional activator protein [Rhizobium etli Brasil 5] Length = 179 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 8/181 (4%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + + D + G LP+ W + ++ + + G+ Sbjct: 1 EWVEQYRDRDYFSIDPVVRLGRRGFLPVEWSASGWDS--GRAYGFFKEAMAFGVGRQGVT 58 Query: 120 FPVRLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFK-KRSSAARN 173 PVR + TS + + + + + + L ++ + Sbjct: 59 LPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSGMRKVADLPR 118 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE CL++ +G +++I +L +SV V YL SA KL +A+A+A Sbjct: 119 LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALEL 178 Query: 234 I 234 I Sbjct: 179 I 179 >gi|289664500|ref|ZP_06486081.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 267 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 76/243 (31%), Gaps = 17/243 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSGD 63 + +LQ L+ L + + A F + +++ + N D Sbjct: 23 RDLQALQTLNRCLDRVFRDVSALGFQSLVYDYAPVPLSIEGALITPTVFMQRNAPGDMQH 82 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ-----LSVRLEGGLLPFAGI 118 + D P +W + R G Sbjct: 83 VWCAHGYYQHDPVQQRATRRTTPFVWSYHTDGNCAGVEYVGGQHWQVTRYLCDSGMGTGA 142 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAA 171 P+ L + + + EA +Q L ++R Sbjct: 143 TVPLHLPGGAFATFSGAIDTVDAEAPHLAEAQLLPFLLLAHAFQARAQELLDPQERRCHH 202 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 203 IALTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 262 Query: 232 GYI 234 + Sbjct: 263 RLL 265 >gi|30575828|gb|AAP32919.1| CviR [Chromobacterium violaceum] Length = 233 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 65/221 (29%), Gaps = 31/221 (14%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + EL L + ++ + L ++ +Y D D Sbjct: 34 IETENELKAFLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPSDWLDQYMKENY 93 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D L + G P++W+ + + + +GI F + G Sbjct: 94 AQHDPILR-IHLGQGPVMWEERFNRAK-GAEEKRFIAEATQNGMGSGITFSAASERNNIG 151 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 ++ + R L++RE G T Sbjct: 152 SILSIA-----------------------------GREPGNMPLSQREYDIFHWMSRGKT 182 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + EIA L +S TV ++ + KL+A NR AI + Sbjct: 183 NWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMHL 223 >gi|254234270|ref|ZP_04927593.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719] gi|126166201|gb|EAZ51712.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719] Length = 243 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 81/234 (34%), Gaps = 4/234 (1%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59 + ++ +K+++ + + + R+ + ++ D +L ++ Sbjct: 8 LFDSVARLRKAATTEAVCREMVEFSARLGFDRVIVCSLFPRPDEDELIDELFFVHGDWAE 67 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 H P W E E VR L G+ Sbjct: 68 GRSAQ-QRDAYLLHCPVTRHILELDEPFFWSKSPSEDP-ERMTYRIVRGVRDLGQVNGMQ 125 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178 PV G V F E L L + A C + L S+ A+ L+ERE Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 >gi|296390495|ref|ZP_06879970.1| transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 243 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 4/234 (1%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59 + ++ +K+++ + + + R+ + ++ +L ++ Sbjct: 8 LFDSVARLRKAATTEAVCREMVEFAVRLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAE 67 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 H P W E + ++ + L G+ Sbjct: 68 GRSAQERD-AYLLHCPVTRHILELDEPFFWSKSPSEDPARMAYRIVRGVR-DLGQVNGMQ 125 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178 PV G V F E L L + A C + L SS A+ L+ERE Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSSGDAQALSERE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 >gi|295095488|emb|CBK84578.1| transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 173 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 10/178 (5%) Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D L I + + + Q GI Sbjct: 1 MAQYQSENYFAIDPVLK-----PENFIQGHLPWTDELFTDAQQLWDGARDHGLRKGITQC 55 Query: 122 VRLGFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTE 176 + + H G++ + + + EV + +T L + ++ Sbjct: 56 LMMPNHALGFLSVSCTSLQAHSISSEEVELRLQMLVQMALTTLLRFEHETVMPPEMKFSK 115 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ +G TS EIA L +S +TVN + + K +A N+IQ A G I Sbjct: 116 REREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKIQIACYAAATGLI 173 >gi|148265144|ref|YP_001231850.1| regulatory protein, LuxR [Geobacter uraniireducens Rf4] gi|146398644|gb|ABQ27277.1| transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 250 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 6/212 (2%) Query: 25 QNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGL 84 ++ I + A+Y + +Y + D D Sbjct: 40 RDLIGFDH-AVYGLAKLNHHGCITAYETLNFSYPAEWLDAYRTNNFHLLDPITTENFKNY 98 Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144 W+ +E+ + G A + F G + S + Sbjct: 99 SLQYWKDTFNTYDVEAK---FLSAALDFRLVDGYAIGITNSFRTEGCIFSISGPIKKEPR 155 Query: 145 VIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + + F ++ +K+ + +T RE L G +S +I+ L +S Sbjct: 156 NELVLNLLAPHLHQAFRQVLSVEKKGKISTTITIREREVLNWIKKGKSSWDISTILAISE 215 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + KLDAV+RI A+A A+ G I Sbjct: 216 RTVKFHVDNVMRKLDAVSRIHAVAVALSVGLI 247 >gi|66767622|ref|YP_242384.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66572954|gb|AAY48364.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. 8004] Length = 254 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 76/244 (31%), Gaps = 17/244 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62 G+ + + L+ L + + A F + +++ + N D Sbjct: 9 GRDLQARETLNACLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPSVFLQRNAPDDMH 68 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-----IESSGQLSVRLEGGLLPFAG 117 ++ D P +W E + + R G Sbjct: 69 NVWCEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGVEYVGDQHRQVTRYLCDSDMGTG 128 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAAR 172 + P+ L + EA + EL + Sbjct: 129 VTVPLHLPGGAFATFSAAVNVTQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRCH 188 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ + + Sbjct: 189 HIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMH 248 Query: 231 FGYI 234 + + Sbjct: 249 YRLL 252 >gi|332162143|ref|YP_004298720.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|1723596|sp|P54295|YENR_YEREN RecName: Full=Transcriptional activator protein yenR gi|773400|emb|CAA53694.1| yenR [Yersinia enterocolitica] gi|318606195|emb|CBY27693.1| quorum-sensing transcriptional activator YpeR [Yersinia enterocolitica subsp. palearctica Y11] gi|325666373|gb|ADZ43017.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864049|emb|CBX74127.1| transcriptional activator protein yenR [Yersinia enterocolitica W22703] Length = 244 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 67/235 (28%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +++ + ++ +N + NY LD D Sbjct: 13 EDIKNYIQRRIKTYGDLCYSYLVMNKKTPL-----HPTIISNYPLDWVKKYKKNSYHLID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + P W +S+ +L G F + + + Sbjct: 68 PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNI 126 Query: 135 T-SEFLMLANEVIIEA-----HGACYQVITDFLEL-------FKKRSSAARN--LTERET 179 + ++ + IE L L + R++ + RE Sbjct: 127 SNGSDDSISFDERIEINKEKIQMLLIITHEKMLGLYQSNSDKNENRNTQIERDIFSPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EI+ LG+ TV ++G+ KL +N AI I I Sbjct: 187 EILYWASVGKTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241 >gi|85059718|ref|YP_455420.1| transcriptional activator [Sodalis glossinidius str. 'morsitans'] gi|84780238|dbj|BAE75015.1| transcriptional activator [Sodalis glossinidius str. 'morsitans'] Length = 240 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 62/214 (28%), Gaps = 22/214 (10%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 FA + +N P + +Y + D + P W++ Sbjct: 36 FAYFMMNKDDGQPA-----FMISDYPAGWLNQYRNYGYQKIDPVMLIACRKFTPFSWKNN 90 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS------------EFLM 140 ++ ++S G F + + + + + Sbjct: 91 PN-MPDQNFYKMSSDYALDN----GYTFTLHDPDNNLATLTISQMKQNAVFYDIIEKEKD 145 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++I H + E + L+ RE L A G T EI+ L + Sbjct: 146 KFQMLLITTHEKVIRFFDARKEQGSESEEEPCRLSPREKEVLFWASVGKTYNEISTILSI 205 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + KL N AI +A+ + Sbjct: 206 REGTVKFHIRNIINKLGVANAKHAITRAMELKLL 239 >gi|241205786|ref|YP_002976882.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859676|gb|ACS57343.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 78/224 (34%), Gaps = 3/224 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + L + + L S D + + + + + Sbjct: 20 ARTRSLFAQALGRVSTAFGLSHATLMHAPSPEDLLLKP--LLIESSLPVAYVRDFDRAHM 77 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 G F +P W + + + ++ L AG+A P + Sbjct: 78 MRGCPFGVRLRQSAVPPAWH-LNDASNGQAFPAELRALMLRHAIPAGVAMPTIAADGQRL 136 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 F E L E + + + + A L+ RE ++ G T Sbjct: 137 VFWFCGERAALGQSETNELAMIILHALDAYNAVKRNEECAHNALSTRELEVVRWTAQGKT 196 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 197 SIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|218506239|ref|ZP_03504117.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 215 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 67/198 (33%), Gaps = 12/198 (6%) Query: 49 QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQ 103 + +L N D D D P W + + Sbjct: 10 PSLLKLRNISDDMHDYWFDRGYFRIDPVQQVALRTSAPFFWNYDPDADTLIKGFMSEDTA 69 Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVIT 158 R G+ PV + V E I + + + Sbjct: 70 PVTRYLSERDMSTGVTVPVHMPRGDYATVTGIRFGRNNDFERHALRYIADFNLIAHVFHE 129 Query: 159 DFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LF + RS LTERE CL+ + +GY+++EI+ + SV TV +L +A KL Sbjct: 130 AAYSLFDRKARSVGTVRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKL 189 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR QA+ +A + + Sbjct: 190 GARNRTQAVVRATHYRLL 207 >gi|238791898|ref|ZP_04635535.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] gi|238729002|gb|EEQ20519.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] Length = 245 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 22/236 (9%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +++ + ++ +N + NY +D D Sbjct: 13 EDIKNYIQRRIKAYGDLRYSYLVMNKKTPL-----HPTIISNYPMDWVQTYKRNNYHLID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + P W I+S+ L G F + + + Sbjct: 68 PVILTAKDKVAPFAWDDNSV-INIKSTDSAVFNLAREYNIINGYTFVLHDNNNNMATLNI 126 Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL----------TERE 178 + ++ + IE L L+ K ++ L + RE Sbjct: 127 SNGSDDSISFDESIETNKEKIQMLLILTHDKMLGLYHKNNNKNNELNGVGGEREIFSPRE 186 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T E++ LG+ TV ++G+ KL +N AI I I Sbjct: 187 NEILYWASVGKTYSEVSIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242 >gi|217979469|ref|YP_002363616.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217504845|gb|ACK52254.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 238 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 12/225 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L L+ + + + D I D Sbjct: 18 LEELLELVCRSYDLFSVIYICPSFIG---FSLSAPFIVQPPCRGWADQQKIQSLLSTDPM 74 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + +LP+ W ++++++ E+ +G G+ PVR + + + Sbjct: 75 VRAMSRTVLPMDWAALRQKSAHETGIHFLPGEDGA--LRQGLTIPVRGPSNSVWGLFIAT 132 Query: 137 EFLM------LANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGY 189 +E++I+ + V ++ + + +T RE L L G Sbjct: 133 SNESEICWASRRHELMIDLAHIAHYVHKRACDIHGEGHTIDLSTITRREIEALALVAQGK 192 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA + +S TV A+L SA KL A+NR+ A AKA+R G I Sbjct: 193 KPGEIAMLMRISNDTVKAHLDSARDKLQALNRVHAAAKALRAGLI 237 >gi|325271203|ref|ZP_08137751.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324103661|gb|EGC00960.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 235 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 62/214 (28%), Gaps = 10/214 (4%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 + + +N + + + NY + D + L Sbjct: 27 HLAQDLAMQYLGLNLRIQIATQTPRLYLYSNYPDEWISRYQRDDFYKQDCAAHLSHQSTL 86 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 P++W G + H + + Sbjct: 87 PVLWTDELYHEAP-----HFREAACQHGLRHGWTQSLHDLQHNESQISVARPAGSIDINE 141 Query: 146 IIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + E C+ + E ++ RE L+ + G T+ ++A L L Sbjct: 142 LYEKAGSVQWLCHTLHAVLGEHHLNALCPPQPKMSARELEVLKWSAAGKTAADVACILSL 201 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TVN ++ S K +A N+ AIA A G+I Sbjct: 202 SQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235 >gi|222055510|ref|YP_002537872.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] gi|221564799|gb|ACM20771.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] Length = 248 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 75/219 (34%), Gaps = 5/219 (2%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + + + + + N A++ I Q +Y + D Sbjct: 31 IKNIVDSLSSLVAIDN-AVFGIAQIGTNGLIQTYDVMNISYPEEWLITYKRKNFCQVDPI 89 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 S W ++ + + + + GIA VR G + + Sbjct: 90 AKENFSNFELQFW---EDTYKKWNPPKEFISAARDFNLYNGIACGVRNLKSTEGSLFSVA 146 Query: 137 EFLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 L + T F L K ++ L++RE L G +S +I+ Sbjct: 147 GKLENHPREKFIIENLTPHLHTAFTTYLSKTKAPVNFELSKREIEVLNWVKKGKSSWDIS 206 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +SV TV ++ + VKL+AV+R A+A A+ G I Sbjct: 207 VILAISVRTVKFHVENIMVKLNAVSRTHAVAIALSAGVI 245 >gi|269139938|ref|YP_003296639.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202] gi|53147449|dbj|BAD52106.1| AHL-dependent transcriptional regulator [Edwardsiella tarda] gi|255529368|gb|ACU12619.1| AHL-dependent transcriptional regulator [Edwardsiella tarda] gi|267985599|gb|ACY85428.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202] gi|304559773|gb|ADM42437.1| EdwR [Edwardsiella tarda FL6-60] Length = 239 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 17/230 (7%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 E+ + FA +N + I + NY + + + D Sbjct: 11 EIKQFIDRSLVAYGHTQFAYLLLNK-----KNPSDIIIISNYPDEWVTLYKEHHYQHIDP 65 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + P +W + + L G F + ++ + Sbjct: 66 VVISALRRVSPFLWDEKI-TVNSKLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAMLSLM 124 Query: 136 SEFLMLA---------NEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + LA ++I+AH Q K+ + RE L Sbjct: 125 VDDRGLAEIERSRGVLQMLLIDAHERFMNGQRHITAQHYCSKKEPIENIFSTRENEILYW 184 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T +EIA LG+ TV ++G+ KL +N AI + I Sbjct: 185 ASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 234 >gi|91780463|ref|YP_555670.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693123|gb|ABE36320.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 262 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 70/232 (30%), Gaps = 9/232 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDSGDI 64 K+ + ++ + + F Y I+ S + L +Y + Sbjct: 32 KRLACATDIPSLVESFGHAAGKLGFPHYVISRVTRSRSTRAPQTALEMIGSHYPKEWVQH 91 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D P W I + T + + AG++ PV Sbjct: 92 YQRRDYALTDPVHRAAFFQSAPYRWHDIIDLTKADHR---FLGEASEAGLPAGLSIPVHQ 148 Query: 125 GFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCL 182 + +E+ A Q + L S A L T + CL Sbjct: 149 SDGSVLLFNLAGPLHSVNSEINARRACLMSAQFNFELHRLGLIHSRRAARLLTPCQIVCL 208 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI E LG S +TV+ ++ A L+ R A +A G I Sbjct: 209 TWVARGKTSAEIGEILGCSHYTVDYHVKKAMEALNIWGRTAAAVQATVQGLI 260 >gi|307133126|ref|YP_003885142.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] gi|313104103|sp|Q47188|EXPR_DICD3 RecName: Full=Transcriptional activator protein expR gi|306530655|gb|ADN00586.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] Length = 250 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 15/199 (7%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 + + NY + DI + D + + + P W + ++ L Sbjct: 43 DVVIISNYPTEWVDIYRNNNYQHIDPVILTAINKISPFSWDDDLVISSKLKFSRIFN-LS 101 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF-------------TSEFLMLANEVIIEAHGACYQV 156 G F + + + F ++I AH + Sbjct: 102 KDYDIVNGYTFVLHDPGNNLAALSFMIEEHRSEELEEIIQNNKDKLQMLLISAHEKLTSL 161 Query: 157 ITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + +S A ++RE L A G T +EIA LG++ TV ++G+ K Sbjct: 162 YREMSRNRNNSKSQEADLFSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKK 221 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +N AI + I Sbjct: 222 LGVLNAKHAIRLGVEMNLI 240 >gi|227822236|ref|YP_002826207.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] gi|227341236|gb|ACP25454.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] Length = 244 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 14/239 (5%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 + L + + L++ + + + +L H + + + Sbjct: 9 DLLDIVEYRGCADPQQFFALMRRTFDIAHLLYLEAEPTAEGLKVCRL---HHTFGAYAEE 65 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPV 122 + D L G+ P+ W + + + + G+A P+ Sbjct: 66 LYLSRGLHRIDPILRLALGGVRPVEWATARRR---FPECEPLYEAAEDIGLSTEGVALPL 122 Query: 123 RLGFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLE--LFKKRSSAARNLT 175 + + ++ + + A LE + LT Sbjct: 123 PSPAGRMALLAISANMSPPEWAEYRRCHLRDFQLAANLFHASMLEQAMADAIDDRDTRLT 182 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET L + G + EIA LG+S TV ++ +A KL+ V+ QA+A+A+R I Sbjct: 183 SRETEVLTWSAAGKSYWEIATILGISERTVRFFMSNARRKLNVVSNTQAVAQAVRHALI 241 >gi|84622824|ref|YP_450196.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578132|ref|YP_001915061.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366764|dbj|BAE67922.1| transcriptional regulator ahyR/asaR family [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522584|gb|ACD60529.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 254 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 14/233 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L + + + ++ + + +++ + N D + Sbjct: 22 LDRVFRDVCALG--FQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVWCEHGYYQH 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P +W + + R G+ P+ L Sbjct: 80 DPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGA 139 Query: 129 NGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181 + L LA ++ + EL + LT RE C Sbjct: 140 FATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHHIPLTRREREC 199 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + + Sbjct: 200 LQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|188990738|ref|YP_001902748.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167732498|emb|CAP50692.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 272 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 76/248 (30%), Gaps = 21/248 (8%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62 G+ + + L+ L + + A F + +++ + N D Sbjct: 23 GRDLQARETLNACLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPSVFLQRNAPDDMH 82 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV---------IESSGQLSVRLEGGLL 113 ++ D P +W E + + R Sbjct: 83 NVWCEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGRTEGVEYVGHQHRQVTRYLCDSD 142 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRS 168 G+ P+ L + EA + EL + Sbjct: 143 MGTGVTVPLHLPGGAFATFSAAVNATQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQE 202 Query: 169 SAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ Sbjct: 203 RRCHHIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVV 262 Query: 227 KAIRFGYI 234 + + + + Sbjct: 263 RGMHYRLL 270 >gi|21243715|ref|NP_643297.1| AhyR/AsaR family transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109298|gb|AAM37833.1| transcriptional regulator ahyR/asaR family [Xanthomonas axonopodis pv. citri str. 306] Length = 254 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 67/214 (31%), Gaps = 12/214 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + + +L+ + N D + D P +W Sbjct: 39 YDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98 Query: 93 QEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 + + R G+ P+ L + + Sbjct: 99 TDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLA 158 Query: 148 EAHGA-----CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200 EA + + EL + LT RE CLQ + G TS+ IA L Sbjct: 159 EAQLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNR 218 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TVN +L SA KL A NR++A+A+ + + + Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVARGMHYRLL 252 >gi|293491180|gb|ADE45144.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 12/214 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + + +L+ + N D + D P +W Sbjct: 39 YDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98 Query: 93 QEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 + + R G+ P+ L + + Sbjct: 99 TDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLA 158 Query: 148 EAHGA-----CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200 EA + + EL + LT RE CLQ + G TS+ IA L Sbjct: 159 EAQLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNR 218 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TVN +L SA KL A NR++A+ + + + + Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|21232249|ref|NP_638166.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21114010|gb|AAM42090.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 258 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 77/248 (31%), Gaps = 21/248 (8%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62 G+ + + L+ L + + A+ F + +++ + N D Sbjct: 9 GRDLQARETLNACLDRVFRDVCAQGFQSLVYDYAPVPLSMEGALITPSVFLQRNAPDDMH 68 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV---------IESSGQLSVRLEGGLL 113 ++ D P +W E + + R Sbjct: 69 NVWCEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGRTEGVEYVGDQHRQVTRYLCDSD 128 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRS 168 G+ P+ L + EA + EL + Sbjct: 129 MGTGVTVPLHLPGGAFATFSAAVNATQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQE 188 Query: 169 SAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ Sbjct: 189 RRCHHIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVV 248 Query: 227 KAIRFGYI 234 + + + + Sbjct: 249 RGMHYRLL 256 >gi|40804409|gb|AAR91700.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae] Length = 254 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 14/233 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L + + + ++ + + +++ + N D + Sbjct: 22 LDRVFRDVCALG--FQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVWCEHGYYQH 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P +W + + R G+ P+ L Sbjct: 80 DPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGA 139 Query: 129 NGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181 + L LA ++ + EL + LT RE C Sbjct: 140 FATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHHIPLTRREREC 199 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + + Sbjct: 200 LQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|22125626|ref|NP_669049.1| transcriptional activator protein [Yersinia pestis KIM 10] gi|45442066|ref|NP_993605.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Microtus str. 91001] gi|51596821|ref|YP_071012.1| quorum-sensing transcriptional activator YpeR [Yersinia pseudotuberculosis IP 32953] gi|108807950|ref|YP_651866.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Antiqua] gi|108812215|ref|YP_647982.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|145599154|ref|YP_001163230.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides F] gi|149365634|ref|ZP_01887669.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CA88-4125] gi|153948985|ref|YP_001400524.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162419359|ref|YP_001606210.1| LuxR family transcriptional regulator [Yersinia pestis Angola] gi|165927469|ref|ZP_02223301.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165939475|ref|ZP_02228021.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166008189|ref|ZP_02229087.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166214550|ref|ZP_02240585.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402379|ref|ZP_02307842.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422303|ref|ZP_02314056.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427015|ref|ZP_02318768.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469621|ref|ZP_02334325.1| transcriptional regulator, LuxR family protein [Yersinia pestis FV-1] gi|170023896|ref|YP_001720401.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186895898|ref|YP_001873010.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218929546|ref|YP_002347421.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CO92] gi|229837989|ref|ZP_04458148.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895186|ref|ZP_04510361.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides A] gi|229898551|ref|ZP_04513696.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. India 195] gi|229902547|ref|ZP_04517664.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|294504217|ref|YP_003568279.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Z176003] gi|21958535|gb|AAM85300.1|AE013776_9 putative transcriptional activator protein [Yersinia pestis KIM 10] gi|6648672|gb|AAF21289.1| transcriptional activator YpeR [Yersinia pestis] gi|45436929|gb|AAS62482.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Microtus str. 91001] gi|51590103|emb|CAH21738.1| quorum-sensing transcriptional activator YpeR [Yersinia pseudotuberculosis IP 32953] gi|108775863|gb|ABG18382.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|108779863|gb|ABG13921.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Antiqua] gi|115348157|emb|CAL21085.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CO92] gi|145210850|gb|ABP40257.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides F] gi|149292047|gb|EDM42121.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CA88-4125] gi|152960480|gb|ABS47941.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|162352174|gb|ABX86122.1| transcriptional regulator, LuxR family [Yersinia pestis Angola] gi|165912524|gb|EDR31155.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165920524|gb|EDR37801.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992571|gb|EDR44872.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204252|gb|EDR48732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166958809|gb|EDR55830.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048212|gb|EDR59620.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053994|gb|EDR63822.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750430|gb|ACA67948.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186698924|gb|ACC89553.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229679994|gb|EEO76093.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|229688099|gb|EEO80170.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. India 195] gi|229694355|gb|EEO84402.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701820|gb|EEO89844.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides A] gi|262362334|gb|ACY59055.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis D106004] gi|262366357|gb|ACY62914.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis D182038] gi|294354676|gb|ADE65017.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Z176003] gi|320014713|gb|ADV98284.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 245 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 68/236 (28%), Gaps = 22/236 (9%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +++ + ++ +N + + NY LD D Sbjct: 13 EDIKNYIQRRIKAYGNIRYSYLLMNKKVPL-----HPAIISNYPLDWVKKYKKNSYHLID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + P W I+S+ L G F + + + Sbjct: 68 PVILTAKGKVAPFAWDDNSV-INIKSTDSAVFNLAREYNIVNGYTFVLHDNNNNMATLNV 126 Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL----------TERE 178 + + + + IE + L L+ K L + RE Sbjct: 127 SSGDDDSIFFDESIEVNKEKIQMLLIFIHDKMLGLYNKSHHENNTLNKKENKREIFSPRE 186 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA LG+ TV ++G+ KL +N AI I I Sbjct: 187 NEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242 >gi|240142577|ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] gi|240012524|gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] Length = 296 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 87/246 (35%), Gaps = 30/246 (12%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 +Q+L LHL + +F+ +N A + +I + D D Sbjct: 54 VQDLGEILHLTATKAGFESFSF--LNGATVASTSESIIMTVS---KDWQDTYFSEGFLDV 108 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFPVRL-GFHKN 129 D L + +W I+ V+ + ++ G+ P+ L + Sbjct: 109 DPCLMRALTSNSSFMWSDIELPPVVNGKVPGARRTMEAARDHGYVDGLVLPLHLVDTKGS 168 Query: 130 GYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLELFK----------------KRS 168 Y F S F ++ E H + +L + Sbjct: 169 PYNSFCSLFWKEDERLLPEVSRRYGHYLHMLAMLWEQKLQDLSPQLSTGMLGSISVLGNA 228 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + L+ RE L A G T+ E A LGLS+ TVN +LG A KL A N+ A+A A Sbjct: 229 RSTKALSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLGKAQKKLMAANKTHAVAIA 288 Query: 229 IRFGYI 234 I G I Sbjct: 289 INRGVI 294 >gi|238795934|ref|ZP_04639446.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] gi|238720139|gb|EEQ11943.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] Length = 245 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 66/236 (27%), Gaps = 22/236 (9%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +++ + ++ +N + NY LD D Sbjct: 13 EDIKNYIQRRIKAYGDLRYSYLVMNKKTPL-----HPAIISNYPLDWIKKYKKNSYHLID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + P W +S+ L G F + + + Sbjct: 68 PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFNLAREYNIINGYTFVLHDNNNNMATLNI 126 Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL----------TERE 178 + + + IE L L++K + L + RE Sbjct: 127 SNGNDDSIYFDESIEVNKEKIQMLLILTHDKMLGLYQKNINENNELGKVPNGREIFSPRE 186 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA LG+ TV ++G+ KL +N AI I I Sbjct: 187 NEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242 >gi|330897659|gb|EGH29078.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 240 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + + + L N D GD Sbjct: 21 TITELDGQAAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDDAWGDAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ + + + V I++ Sbjct: 75 QHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVTAVYDALVDTCE---LLPAISYGYTNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V + + E ++ + + +R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVERSISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|293491176|gb|ADE45142.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 12/214 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + + +L+ + N D + D P +W Sbjct: 39 YDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98 Query: 93 QEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 + + R G+ P+ L + + Sbjct: 99 TDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLA 158 Query: 148 EAHGA-----CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200 EA + + EL + LT RE CLQ + G TS+ IA L Sbjct: 159 EAQLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNR 218 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TVN +L SA KL A NR++A+ + + + + Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|238920760|ref|YP_002934275.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri 93-146] gi|238870330|gb|ACR70041.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri 93-146] Length = 239 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 21/232 (9%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 E+ + FA +N + I + NY + + + D Sbjct: 11 EIKQFIDRSLVAYGHIQFAYLLLNK-----KNPSDIIIISNYPDEWVTLYKEHHYQHIDP 65 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + P +W E+ + S LS L G F + ++ + Sbjct: 66 VVISALRRVSPFLW---DEKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAMLS 122 Query: 134 FTSEFLMLA---------NEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCL 182 + LA ++I+AH Q + + RE L Sbjct: 123 LMVDDRGLAEIERNRGVLQMLLIDAHERFINGQRQITAQRHCSNKEPIENIFSTRENEIL 182 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T +EIA LG+ TV ++G+ KL +N AI + I Sbjct: 183 YWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 234 >gi|238025268|ref|YP_002909500.1| Autoinducer-binding domain-containing protein [Burkholderia glumae BGR1] gi|237879933|gb|ACR32265.1| Autoinducer-binding domain protein [Burkholderia glumae BGR1] Length = 273 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 15/213 (7%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L + + FA P + N+ + + + Sbjct: 55 ESLLDAVLPIARRLGFAYLEYFFNTSLPVSAPRKLVIGNFPPAWSRREGADEVSEANPII 114 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 S ++P+ W + + + G + VR G G + Sbjct: 115 ARCKSSMMPMAWDEASFASHPD-----FRAMLARAGIGGGWSQLVRDGAGNWGVLTVART 169 Query: 138 --------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + +++ AH ++ + LTE E + L+ DG Sbjct: 170 ACRYAGAMEVEAEAQLLWLAHIVHSRLCQMLRPPMTGANRVL--LTEMEKTILRWTVDGK 227 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 TS E+AE L +S TVN ++ + K++ N+ Sbjct: 228 TSGELAEILQVSARTVNFHVQNILAKMNTCNKT 260 >gi|2495419|sp|Q46967|ECHR_ERWCH RecName: Full=Transcriptional activator protein echR gi|1177878|gb|AAA86840.1| EchR [Erwinia chrysanthemi] Length = 250 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 20/232 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + L+ +A +N + + NY + +I + D Sbjct: 15 IQNYLNRKLKSYGDLKYAYLIMNKKKPTD-----VVIISNYPSEWVEIYRSNNYQHIDPV 69 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + + P W + ++ L G F + + + F Sbjct: 70 ILTAINKISPFSWDDDLVISSKLKFSRIFN-LSKEYDIVNGYTFVLHDPGNNLATLSFMF 128 Query: 137 EF-LMLANEVIIE-----AHGACYQVITDFLELFKK--------RSSAARNLTERETSCL 182 E E I++ L+++ +S ++RE L Sbjct: 129 EENRSGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNIFSQRENEIL 188 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T +EIA LG++ TV ++G+ KL +N AI + I Sbjct: 189 YWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|238754417|ref|ZP_04615773.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC 29473] gi|10444019|gb|AAG17669.1|AF274748_1 response regulator YruR [Yersinia ruckeri] gi|238707450|gb|EEP99811.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC 29473] Length = 247 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 ++ + + R + + I+ + + +Y + DI + Sbjct: 12 IETIRDYIDRKLERYDSPRYTYMVIDKKNPVD-----VFIVTSYPDEWADIYTSQNYQHI 66 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + P W + + L G F + + + Sbjct: 67 DPIVLTAFKRISPFAWDE-NITILSDLKSSKIFALSKKYNIVNGFTFVLHDHMNNLAMLS 125 Query: 134 FT---------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------L 174 + + + ++ L L + + + L Sbjct: 126 LIMDNNADKGLNSRIESDKD---RLQMNLIKIHEKMLMLEQNKLGVSNGKNTDTSGKGIL 182 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L A G T EIA G++ TV ++G+ KL +N QAI + I Sbjct: 183 SPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGVELELI 242 >gi|126464154|ref|YP_001045267.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|126105965|gb|ABN78495.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] Length = 238 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 13/226 (5%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + ++ S ELS +++ + F Y++ L + + + Sbjct: 13 SISRAESRNELS---QALKDAVVGLGFQTYSLAYQRPHALEAVTAPHLTTWPCEQDGASD 69 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D L + +G+ P+IW+S +++ + AG+ P+ Sbjct: 70 PASARIRDPLLDYAVTGIKPLIWRSGSWKSLRKYR---YFPCLHSFEARAGLIVPLPDRR 126 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERET 179 + G + S E I EA + + L+ R+ Sbjct: 127 GRVGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSPALAGLAKLSPRQI 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L G ++ EIA LGLS V ++ KLD +R QA+ Sbjct: 187 EILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232 >gi|330876121|gb|EGH10270.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 240 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y L N D G Sbjct: 21 TITELDGQTAIEKALQWLRRECDSERAMFYQFKGP------MLLTFITSNVDDAWGQAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ ++ + + +V LLP + Sbjct: 75 QHELITQDPVIRCYRNQLGFLNWQDAFKQYPASACYEEAVD-ACELLPAISYGYTSHCRG 133 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 ++ + T + E ++ + + ++R LT RE LQ A Sbjct: 134 TESVTSVCTLSEVERTIS--AEQKYLVSSLMPVLHSVARGLKFSSRGLTLRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|1217954|emb|CAA65307.1| regulatory protein [Erwinia chrysanthemi] Length = 250 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 15/199 (7%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 + + NY + DI + D + + + P W + ++ L Sbjct: 43 DVVIISNYPTEWVDIYRNNNYQHIDPVILTAINKISPFSWDDDLVISSKLKFSRIFN-LS 101 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF-------------TSEFLMLANEVIIEAHGACYQV 156 G F + + + F ++I AH + Sbjct: 102 KDYDIVNGYTFVLHSPGNNLAALSFMIEEHRSEELEEIIQNNKDKLQMLLISAHEKLTSL 161 Query: 157 ITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + +S A ++RE L A G T +EIA LG++ TV ++G+ K Sbjct: 162 YREMSRNRNNSKSQEADLFSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKK 221 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +N AI + I Sbjct: 222 LGVLNAKHAIRLGVEMNLI 240 >gi|77465673|ref|YP_355176.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77390091|gb|ABA81275.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] Length = 238 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 13/226 (5%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + ++ S ELS +++ + F Y++ L + + + Sbjct: 13 SISRAESRNELS---QALKDAVVGLGFQTYSLAYQRPHALEAVTAPHLTTWPCEQDGASD 69 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D L + +G+ P+IW+S +++ + AG+ P+ Sbjct: 70 PASARIRDPLLDYAVTGIKPLIWRSGSWKSLRKDR---YFPCPHSFEARAGLIVPLPDRR 126 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERET 179 + G + S E I EA + + L+ R+ Sbjct: 127 GRIGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSPALAGLAKLSPRQI 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L G ++ EIA LGLS V ++ KLD +R QA+ Sbjct: 187 EILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232 >gi|238789261|ref|ZP_04633048.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC 33641] gi|238722593|gb|EEQ14246.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC 33641] Length = 245 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 65/235 (27%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +++ + ++ +N + NY LD D Sbjct: 13 EDIRNYIQRRIKSYGDLRYSYLVMNKQTPL-----HPTIISNYPLDWVKKYKKNSYHLID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + P W +S+ +L G F + + + Sbjct: 68 PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNI 126 Query: 135 T-SEFLMLANEVIIEA-----HGACYQVITDFLELFKKRSSAARN---------LTERET 179 + + + IE L L+ + + + RE Sbjct: 127 SNGSDDSIYFDESIEINKEKIQMLLILTHEKMLGLYHNSAEKNESGTNKIERDIFSPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EI+ LG+ TV ++G+ KL +N AI I I Sbjct: 187 EILYWASVGKTYSEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241 >gi|5162957|gb|AAD40485.1|AF079973_1 luxR homolog YpsR [Yersinia pseudotuberculosis] Length = 245 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 22/236 (9%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +++ + ++ +N + + NY LD D Sbjct: 13 EDIKNYIQRRIKAYGNIRYSYLLMNKKVPL-----HPAIISNYPLDWVKKYKKNSYHLID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + P W I+S+ L G F + + + Sbjct: 68 PVILTAKGKVAPFAWDDNSV-INIKSTDSAVFNLAREYNIVNGYTFVLHDNNNNMATLNV 126 Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL----------TERE 178 + + + + IE L L+ K L + RE Sbjct: 127 SSGDDDSIFFDESIEVNKEKIQMLLILFHDKMLGLYNKSHHENNTLNKKENKREIFSPRE 186 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA LG+ TV ++G+ KL +N AI I I Sbjct: 187 NEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242 >gi|225628596|ref|ZP_03786630.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] gi|225616442|gb|EEH13490.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] Length = 268 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 31 SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 90 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA R Sbjct: 91 DPVFQEDAPYYRNDTRAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 150 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +FT E + + K +S A LT RE CL+ Sbjct: 151 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 209 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 210 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259 >gi|289668073|ref|ZP_06489148.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 230 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 12/214 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + + +++ + N D + D P +W Sbjct: 15 YDYAPVPLSIEGALITPTVFMQRNAPGDMQHVWCAHGYYQHDPVQQRATRRTTPFVWSYH 74 Query: 93 QEETVIESSGQ-----LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 + R G P+ L + + + Sbjct: 75 TDGNCAGVEYVGGQHWQVTRYLCDSGMGTGATVPLHLPGGAFATFSGAIDTVDAEAPHLA 134 Query: 148 EAHGA-------CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 EA +Q L ++R LT RE CLQ + G TS+ IA L Sbjct: 135 EAQLLPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKNIAAALNR 194 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TVN +L SA KL A NR++A+ + + + + Sbjct: 195 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 228 >gi|86359866|ref|YP_471757.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] gi|86283968|gb|ABC93030.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] Length = 261 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 74/230 (32%), Gaps = 10/230 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ L Q+ + A Y + Sbjct: 30 SAMKNAATVAAALDEFQSHYPIDFVTFH---LARTIVDNVDAPFVRTTYPDSWVSRYLLN 86 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + S LP W+ I + E++ + V E + G++ P+ + Sbjct: 87 DYINVDPIIREGFSRQLPFDWREID---ITETAQEFMVDAELHGIGTNGVSVPIVDKSRR 143 Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + I + + + + + E + + + + L RE CL Sbjct: 144 SLLSINSQKSDEEWTLIERQFLPEWLELGFLLHRKAVFELHGENDPVPALGSREIECLHW 203 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G S++I + LGLS HT YL SA KL AIA A+ I Sbjct: 204 ASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNLI 253 >gi|213970237|ref|ZP_03398368.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] gi|213925118|gb|EEB58682.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] Length = 185 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 60/187 (32%), Gaps = 13/187 (6%) Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 +NYD + I D L H P++W + L Sbjct: 5 NNYDPQWNENYQIHNFVESDPTLQHGFKSNEPMLWSEDTFKD-----HTLLYGEMKKFNL 59 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKR 167 G G V + + + + + +++ + L Sbjct: 60 NYGWLQSSWYNSAAKGVVTLSRSTEAITLKELDAKEAKMSKLVRLTHACLSEIITLSPPY 119 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ RE L+ DG T E I + LG++ TV + + KL+A N+ A K Sbjct: 120 NP-LEKLSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVK 178 Query: 228 AIRFGYI 234 A G I Sbjct: 179 AALLGII 185 >gi|218515977|ref|ZP_03512817.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 173 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 51/172 (29%), Gaps = 2/172 (1%) Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + P + E + L G FPV Sbjct: 1 YYDSHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPV 60 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + + E+ + +L T E CL Sbjct: 61 HDAAGGRGAMSISGSRNFTMLEMAKIL-FIATLIYDRLSQLTLNEKHKPIAFTSSELDCL 119 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G S EIA+ L LS + VN ++GS KL R QA+ A+R I Sbjct: 120 RLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 171 >gi|213967475|ref|ZP_03395623.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301386436|ref|ZP_07234854.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302058672|ref|ZP_07250213.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302131192|ref|ZP_07257182.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927776|gb|EEB61323.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 240 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 75/228 (32%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y L N D G Sbjct: 21 TITELDGQTAIEKALQWLRRECDSERAMFYQFKGP------MLLTFITSNVDDAWGQAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ ++ + + +V LLP + Sbjct: 75 QHELITQDPVIRCYRNQLGFLNWQDAFKQYPASACYEEAVD-ACELLPAISYGYTSHCRG 133 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + T + E ++ + + ++R LT RE LQ A Sbjct: 134 TDSVTSVCTLSEVERTIS--AEQKYLVSSLMPVLHSVARGLKFSSRCLTLRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|254706324|ref|ZP_05168152.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|254711385|ref|ZP_05173196.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|256029985|ref|ZP_05443599.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|256158149|ref|ZP_05456065.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|256252900|ref|ZP_05458436.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261219988|ref|ZP_05934269.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261313770|ref|ZP_05952967.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|261318991|ref|ZP_05958188.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|265987006|ref|ZP_06099563.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|265996667|ref|ZP_06109224.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|260918572|gb|EEX85225.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261298214|gb|EEY01711.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|261302796|gb|EEY06293.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|262550964|gb|EEZ07125.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|264659203|gb|EEZ29464.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] Length = 259 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 22 SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA R Sbjct: 82 DPVFQEDAPYYRNDTRAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +FT E + + K +S A LT RE CL+ Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250 >gi|254699430|ref|ZP_05161258.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261749881|ref|ZP_05993590.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261739634|gb|EEY27560.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] Length = 259 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 22 SDTLALLTRIRDEIGCRYVMHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA R Sbjct: 82 DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +FT E + + K +S A LT RE CL+ Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250 >gi|28453859|gb|AAO43546.1| transcriptional activator CinR [Rhizobium etli CFN 42] Length = 246 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 74/230 (32%), Gaps = 10/230 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ L Q+ + A Y + Sbjct: 15 SAMKNAATVAAALDEFQSHYPIDFVTFH---LARTIVDNVDAPFVRTTYPDSWVSRYLLN 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + S LP W+ I + E++ + V E + G++ P+ + Sbjct: 72 DYINVDPIIREGFSRQLPFDWREID---ITETAQEFMVDAELHGIGTNGVSVPIVDKSRR 128 Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + I + + + + + E + + + + L RE CL Sbjct: 129 SLLSINSQKSDEEWTLIERQFLPEWLELGFLLHRKAVFELHGENDPVPALGSREIECLHW 188 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G S++I + LGLS HT YL SA KL AIA A+ I Sbjct: 189 ASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNLI 238 >gi|269960068|ref|ZP_06174445.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835367|gb|EEZ89449.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 225 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 68/229 (29%), Gaps = 28/229 (12%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S + +QN I ++I +C + D Sbjct: 16 AESSDAIHAWFGELQNEIDFE----FSILGLFGDDYAPDPVCY--GFSPDQFANCFSKKT 69 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + I+ ++ + G+ + L G I Sbjct: 70 AESDPLIAALQQSNHGIM--ALMDSHTHPDYGKRLL-LAGYHGDKKAIYLTSFG------ 120 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQL 184 ++E I + + + + + LT RE L Sbjct: 121 -------DRQPSSEEIDALYLLTPHLYMASSYVCDRNIRVETLPAPESQLTTRECELLPW 173 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++ EI+ L +S TV +L + KLD NR A++KAI G+ Sbjct: 174 LKLGKSNWEISRLLNISERTVKYHLQNIYRKLDVHNRTHAVSKAIELGW 222 >gi|294853143|ref|ZP_06793815.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] gi|294818798|gb|EFG35798.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] Length = 268 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 31 SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 90 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA R Sbjct: 91 DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 150 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +FT E + + K +S A LT RE CL+ Sbjct: 151 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 209 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 210 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259 >gi|167583991|ref|ZP_02376379.1| Autoinducer-binding domain protein [Burkholderia ubonensis Bu] Length = 275 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 11/211 (5%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L + + F + P + N+ + + + Sbjct: 57 QVLLDVALPLARDLGFQYVGYVISTSLPVSSPRRQSISNFPAAWREWERTRSTLECNPII 116 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + + P++W ++ L G +G + VR G + Sbjct: 117 RRCRASVRPLVWDDASFDSAP-----LFRTALGRAGVRSGWSQLVRDSRGSWGVLTLGRT 171 Query: 138 FLMLAN----EVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTS 191 A+ +V + + LTE E + L+ DG TS Sbjct: 172 APHPASCRPYDVEPRLVWLAQMFHYHLSRMCRTGPVGGNEIHLTEMEKTILRWTVDGKTS 231 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 E+A L +SV TVN ++ + +K++ N+ Sbjct: 232 GELATILEVSVRTVNFHVQNILMKMNTCNKT 262 >gi|218659948|ref|ZP_03515878.1| autoinducer transcriptional regulator protein [Rhizobium etli IE4771] Length = 246 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 74/230 (32%), Gaps = 10/230 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ L Q+ + A Y + Sbjct: 15 SAMKNAATVASALDEFQSHYPIDFVTFH---LARTIVDSVDAPFVRTTYPDSWVSRYLLN 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + S LP W+ I + E++ + V E + G++ P+ + Sbjct: 72 DYINVDPIIREGFSRQLPFDWREID---ITETAQEFMVDAELHGIGSNGVSVPIVDKSRR 128 Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + I + + + + + E + + + + L RE CL Sbjct: 129 SLLSINSQKSDDEWTLIERQFLPEWLELGFLLHRKAVFELHGENDPVPALGSREIECLHW 188 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G S++I + LGLS HT YL +A KL AIA A+ I Sbjct: 189 ASRGKDSKDIGKILGLSEHTTRGYLKAARYKLGCPTLSAAIAHAVHLNLI 238 >gi|28869252|ref|NP_791871.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852493|gb|AAO55566.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330964604|gb|EGH64864.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016917|gb|EGH96973.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 240 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y L N D G Sbjct: 21 TITELDGQTAIEKALQWLRRECDSERAMFYQFKGP------MLLTFITSNVDDAWGQAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ ++ + + +V LLP + Sbjct: 75 QHELITQDPVIRCYRNQLGFLNWQDAFKQYPASACYEEAVD-ACELLPAISYGYTSHCRG 133 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 ++ + T + E ++ + + ++R LT RE LQ A Sbjct: 134 TESVTSVCTLSEVERTIS--AEQKYLVSSLMPVLHSVARGLKFSSRGLTLRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|157467980|gb|ABV57378.1| ExpR [Erwinia chrysanthemi] Length = 250 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 20/232 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + L+ +A +N + + NY + +I + D Sbjct: 15 IQNYLNRKLKSYGDLKYAYLIMNKKKPTD-----VVIISNYPSEWVEIYRSNNYQHIDPV 69 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + + P W + ++ L G F + + + F Sbjct: 70 ILTAINKISPFSWDDNLVISSKLKFSRIFN-LSKEYDIVNGYTFVLHDPGNNLATLSFMF 128 Query: 137 EF-LMLANEVII-----EAHGACYQVITDFLELFKKRS-------SAARNL-TERETSCL 182 E E I+ + L+++ S S NL ++RE L Sbjct: 129 EENRSGELEEIVHNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNLFSQRENEIL 188 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T +EIA LG++ TV ++G+ KL +N AI + I Sbjct: 189 YWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|237797654|ref|ZP_04586115.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020504|gb|EGI00561.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 240 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y L L N D G+ Sbjct: 21 TITELDGQTAIENALEWLRRECGSERAMFYQFKGPL------LLTFITSNVDDAWGEAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + ++ L + WQ + I + + +V +++ Sbjct: 75 RHELIRHDPVIRCYHHELGFVNWQDAFRQYPISACYKKAVDACE---LLPAVSYGYTNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V + + E ++ + + ++R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGDIERAISAEQKYLISSLMPVLHSVARGLKFSSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISMIREVSESTVKFHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|37223230|gb|AAQ90214.1| LuxR [Vibrio mimicus] gi|37223256|gb|AAQ90231.1| LuxR [Aliivibrio fischeri] Length = 224 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 11/207 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +G +S +I++ LG S TV +L +A Sbjct: 197 CEGKSSWDISKILGCSERTVTFHLTNA 223 >gi|294010459|ref|YP_003543919.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673789|dbj|BAI95307.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 253 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 8/228 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 +++ +L +L + + R F L + I+ + L Y + Sbjct: 22 QRAETLGDLHGTIDAAVRDLGFRWFTLLHNIDLRRGDEQS----LFLTTYPSAWLEEVLE 77 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + W + + + + + +G + P+R Sbjct: 78 ERHYIEDPIHAACARTPSGLAWDRVGDMLELTPRQRGILDRARDHDLASGYSLPIRTPGE 137 Query: 128 KNGYVIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184 L+ E ++ A EL +R+ L+ R+ C+ L Sbjct: 138 PEAIFTAARSRDEPLSAEEVLTARLLGSVAYDRARELLGERAGPLACVPLSPRQVECIAL 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G + EI + LGLS TV+ Y+ SA + R Q + +A+R G Sbjct: 198 VAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245 >gi|23499883|ref|NP_699323.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62317073|ref|YP_222926.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269066|ref|YP_418357.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|161620206|ref|YP_001594092.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163844315|ref|YP_001621970.1| hypothetical protein BSUIS_B0125 [Brucella suis ATCC 23445] gi|189022339|ref|YP_001932080.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225685981|ref|YP_002733953.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|254691441|ref|ZP_05154695.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|254695262|ref|ZP_05157090.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|254698360|ref|ZP_05160188.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|254711984|ref|ZP_05173795.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|254715054|ref|ZP_05176865.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|254731805|ref|ZP_05190383.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|256043041|ref|ZP_05445986.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|256059638|ref|ZP_05449835.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|256111973|ref|ZP_05452924.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|256256626|ref|ZP_05462162.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|256262895|ref|ZP_05465427.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260544312|ref|ZP_05820133.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260564274|ref|ZP_05834759.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260568545|ref|ZP_05839014.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260757058|ref|ZP_05869406.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260759571|ref|ZP_05871919.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260762815|ref|ZP_05875147.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260882868|ref|ZP_05894482.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|261215627|ref|ZP_05929908.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|261216761|ref|ZP_05931042.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261319628|ref|ZP_05958825.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261323608|ref|ZP_05962805.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|265989480|ref|ZP_06102037.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|265993421|ref|ZP_06105978.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|297249982|ref|ZP_06933683.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|75505158|sp|Q579W9|VJBR_BRUAB RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|81751697|sp|Q8FXF9|VJBR_BRUSU RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|123754460|sp|Q2YJ50|VJBR_BRUA2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|190360175|sp|Q8YAY5|VJBR_BRUME RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|23463458|gb|AAN33328.1| transcriptional regulator, LuxR family [Brucella suis 1330] gi|62197266|gb|AAX75565.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82939340|emb|CAJ12284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis biovar Abortus 2308] gi|161337017|gb|ABX63321.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163675038|gb|ABY39148.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020913|gb|ACD73634.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225642086|gb|ACO01999.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|260097583|gb|EEW81457.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260151917|gb|EEW87010.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260155210|gb|EEW90291.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260669889|gb|EEX56829.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260673236|gb|EEX60057.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260677166|gb|EEX63987.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260872396|gb|EEX79465.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|260917234|gb|EEX84095.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|260921850|gb|EEX88418.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261292318|gb|EEX95814.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261299588|gb|EEY03085.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|262764291|gb|EEZ10323.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|263000149|gb|EEZ12839.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|263092732|gb|EEZ16941.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|297173851|gb|EFH33215.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|326410305|gb|ADZ67369.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326553598|gb|ADZ88237.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M5-90] Length = 259 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 22 SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA R Sbjct: 82 DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +FT E + + K +S A LT RE CL+ Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250 >gi|294676640|ref|YP_003577255.1| LuxR family autoinducer-binding transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475460|gb|ADE84848.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 261 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 77/242 (31%), Gaps = 18/242 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +S L R I A + + D + + N D D Sbjct: 20 ASGLGREVDRFFEIARGFGASALIYDYTPRHRETDGTVTAPAVMMVRNLDPGMIDYWCGR 79 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + D + + P +W E + + + + V GI P+ Sbjct: 80 GYAHVDPVQAVAVNSVAPFVWSYDAEAGDLSASFLTRNSRPVVEFISASGFVNGITVPIH 139 Query: 124 LGFHKNG-----YVIFTSEFLMLANEVIIEAHGACYQVITDF------LELFKKRSSAAR 172 L + F +A +V+ D + Sbjct: 140 LPGGGYVTVNGLWNGPGRAFAAVAAQVLPGFALMAQAFQNDIGAPAPADPAPPQPQPRTP 199 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE CL A G +++E + + SV TV +L +A KL A NR A+A+A+R G Sbjct: 200 ALSARERECLDHAAQGRSAKETSRLIERSVPTVVMHLNAAVRKLGARNRSHAVAEAVRRG 259 Query: 233 YI 234 I Sbjct: 260 LI 261 >gi|224552939|gb|ACN54712.1| PagR [Pantoea agglomerans pv. gypsophilae] gi|224552942|gb|ACN54714.1| PagR [Pantoea agglomerans pv. gypsophilae] Length = 210 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRSIEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E E Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|254720638|ref|ZP_05182449.1| regulatory protein LuxR [Brucella sp. 83/13] gi|265985682|ref|ZP_06098417.1| regulatory protein LuxR [Brucella sp. 83/13] gi|264664274|gb|EEZ34535.1| regulatory protein LuxR [Brucella sp. 83/13] Length = 259 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 22 SDTLALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA R Sbjct: 82 DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +FT E + + K +S A LT RE CL+ Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250 >gi|261823621|ref|YP_003261727.1| LuxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|2495420|sp|Q47189|EXPR_PECCC RecName: Full=Transcriptional activator protein expR gi|599736|emb|CAA56646.1| expR [Pectobacterium carotovorum] gi|261607634|gb|ACX90120.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 245 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 73/232 (31%), Gaps = 20/232 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + + + + +A +N I + N+ + +I + D Sbjct: 15 IKSQFDMALSHYGDIKYAYMVLNKKKPTE-----ILIISNHHDEWREIYQANNYQHIDPV 69 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + + P W + L G F + + + Sbjct: 70 VIAALNKITPFPWDE-DLLVSTQLKMSKIFNLSREHNITNGYTFVLHDHSNNLVMLSIMI 128 Query: 137 EFLMLAN-EVIIE-----AHGACYQVITDFLEL--------FKKRSSAARNLTERETSCL 182 + ++N + +IE + + + L +RS+ ++RE L Sbjct: 129 DESNVSNIDDVIESNKDKLQMTLMTIHAETISLYREMIRNKEDERSNDKDIFSQRENEIL 188 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T +EIA L + TV ++G+ KL +N AI I I Sbjct: 189 YWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIELQLI 240 >gi|222109015|ref|YP_002551281.1| conjugal transfer regulatory protein [Agrobacterium radiobacter K84] gi|13405830|gb|AAD31606.2| TraR' [Agrobacterium radiobacter K84] gi|221727937|gb|ACM30987.1| conjugal transfer regulatory protein [Agrobacterium radiobacter K84] Length = 234 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L + + +A I I + NY D + D Sbjct: 21 LKTGLADVADHFGFTGYAYLHIQHKH--------IIAVTNYHHDWRSLYFDKKFDALDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + +GI P+R S Sbjct: 73 VKRARSRKHVFAWSGEQERPALSKEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARN---LTERETSCLQLAGDGYTSE 192 E + + I+A A V + + + A + L +E + L+ G T E Sbjct: 133 ERTAIPLDREIDAVAAAAAVGQLHARISFLRITPTAEDAVWLDPKEATYLRWIAVGKTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ G+ ++V L A + D ++ A AIR I Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 >gi|154243760|ref|YP_001409333.1| autoinducer-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162882|gb|ABS70097.1| Autoinducer-binding domain protein [Xanthobacter autotrophicus Py2] Length = 233 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 81/228 (35%), Gaps = 13/228 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + Q L L + + +A + I + NY + Sbjct: 15 ACTEQALKEALAELVQDLGFDGYAYLNVQPVR--------IFAVSNYASEWQARYLTQNY 66 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + + + W + ++ + + +GI+ PVR F Sbjct: 67 AMIDPVVTMAKAQMKAFAWAAAAPRSLSKPLRRFYSE-ASDFGIRSGISIPVRTAFGHLS 125 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAG 186 + S L E I+ A V ++ ++ + + L ++ CL+ + Sbjct: 126 MLTLASHKPSLNLETDIDQIAAVTAVAQLHAKMEQQDAEPTASVEIDLKAKQALCLKWSA 185 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T ++IA G+S TVN +L +A LDA + QA A A + I Sbjct: 186 EGKTMKDIASIEGMSFATVNFHLNNARKALDAGSLAQATALATKLKLI 233 >gi|94497064|ref|ZP_01303637.1| transcriptional regulatory protein [Sphingomonas sp. SKA58] gi|94423436|gb|EAT08464.1| transcriptional regulatory protein [Sphingomonas sp. SKA58] Length = 253 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 8/228 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 +++ +L +L + + R F L + I+ + L Y + Sbjct: 22 QRAETLGDLHGTIDAAVRDLGFRWFTLLHNIDLRRGDEQS----LFLTTYPSAWLEEVLE 77 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + W + + + + + +G + P+R Sbjct: 78 ERHYLEDPIHAACARTPSGLAWDRVGDVLELTPRQRGILDRARDHDLASGYSLPIRTPGE 137 Query: 128 KNGYVIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184 L+ E ++ A EL +R+ L+ R+ C+ L Sbjct: 138 PEAIFTAARSRDEPLSAEEVLTARLLGSVAYDRARELLGERAGPLACVPLSPRQVECIAL 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G + EI + LGLS TV+ Y+ SA + R Q + +A+R G Sbjct: 198 VAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245 >gi|1706700|sp|P54293|ESAR_ERWST RecName: Full=Transcriptional activator protein esaR gi|476612|gb|AAA82097.1| esaR [Pantoea stewartii subsp. stewartii DC283] Length = 249 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 L + + + + ++A ++ + + + +Y + + D Sbjct: 13 DTLQTYIQRKLSPLGSPDYAYTVVSK-----KNPSNVLIISSYPDEWIRLYRANNFQLTD 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + P W + L G + + + + Sbjct: 68 PVILTAFKRTSPFAWDENITLMSDLRFTK-IFSLSKQYNIVNGFTYVLHDHMNNLALLSV 126 Query: 135 ---TSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNL---------TERET 179 ++ L + E L A L + RE Sbjct: 127 IIKGNDQTALEQRLAAEQGTMQMLLIDFNEQMYRLAGTEGERAPALNQSADKTIFSSREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA G+SV TV ++ + VKL N QAI + I Sbjct: 187 EVLYWASMGKTYAEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDLI 241 >gi|9297069|sp|O87971|YUKR_YERRU RecName: Full=Transcriptional activator protein yukR gi|3388087|gb|AAC28702.1| response regulator YukR [Yersinia ruckeri] Length = 229 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 28/228 (12%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 R + + I+ + + +Y + DI + D + + Sbjct: 6 ERYDSPRYTYMVIDKKNPVD-----VFIVTSYPDEWADIYTSQNYQHIDPIVLTAFKRIS 60 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT---------S 136 P W + + L G F + + + + Sbjct: 61 PFAWDE-NITILSDLKSSKIFALSKKYNIVNGFTFVLHDHMNNLAMLSLIMDNNADKGLN 119 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LTERETSCLQLAG 186 + + ++ L L + + + L+ RE L A Sbjct: 120 SRIESDKD---RLQMNLIKIHEKMLMLEQNKLGVSNGKNTDTSGKGILSPRENEVLHWAS 176 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA G++ TV ++G+ KL +N QAI + I Sbjct: 177 MGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGVELELI 224 >gi|148558318|ref|YP_001257186.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148369603|gb|ABQ62475.1| transcriptional regulator, LuxR family [Brucella ovis ATCC 25840] Length = 268 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 31 SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLITLPATWVARYSSKNYFAI 90 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA R Sbjct: 91 DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 150 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +FT E + + K +S A LT RE CL+ Sbjct: 151 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 209 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 210 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259 >gi|218680259|ref|ZP_03528156.1| transcriptional regulator [Rhizobium etli CIAT 894] Length = 234 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L + ++ +A I NYD + D Sbjct: 21 LRQAIADFADQAGFGGYAYLYIRPGHTIAAS--------NYDPEWRSTYFRQNFEAVDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + + +GI P+R S Sbjct: 73 VKRAKSLKQAFTWSGEQERPRLSKTERAFYAQAADFGIRSGITVPIRTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 + + I+ A V + + + L +E + L+ G T E Sbjct: 133 AKTAIDLKRDIDTVAAAAAVGQLHSRMCFLPLTPSEQHPAWLDPKEGTYLRWIAVGKTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A+ G+ ++V + + +L IA AIR G I Sbjct: 193 EVADLEGVKYNSVKSKIEETRKRLGIHTMPHLIALAIRAGLI 234 >gi|298486382|ref|ZP_07004444.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159110|gb|EFI00169.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 238 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y + L N D G Sbjct: 19 TISELDGQTAVENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 72 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125 D + + + L + WQ + + + + V E G R Sbjct: 73 QRGLITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAISYGYMNHCRGA 132 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 ++ E ++ + + +R LT RE LQ A Sbjct: 133 DSVTSVCTLGEVGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWA 188 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 189 RDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 237 >gi|182679882|ref|YP_001834028.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635765|gb|ACB96539.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 257 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 9/230 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ + E+ + L+ ++ F+ + I + ++ + + +Y D + Sbjct: 16 QRAKNFSEIHDCVLLVSCQM---GFSYFAITEHFNTQPKRPVPMSIVHYPKDWESLFRRK 72 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D N+ L W + + + + L G P + Sbjct: 73 RLFGVDPVQRASNNRLRGFFWSEVPRMIPMSRQDHMILELARKNGLGDGYTVPANIPGRY 132 Query: 129 NGYVIFT---SEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCL 182 NG F SE + L + + L + LT+R+ C+ Sbjct: 133 NGSCSFGMKVSEEVRLEFKHLPLLDYIGTAAFEIAQSLHHGSAPGELDRPRLTDRQLDCV 192 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L G ++ EI L + T ++ A+ + R +A+ G Sbjct: 193 ALLAQGLSTVEIGHALNIRYETAVQHIKDASQRYGVNRRTPLAVRALLDG 242 >gi|330879892|gb|EGH14041.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 240 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y + L N D G Sbjct: 21 TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125 D + + + L + WQ + + + + V E G R Sbjct: 75 QREFIPQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAISYGYMNHCRGA 134 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 ++ E ++ + + +R LT RE LQ A Sbjct: 135 DSVTSVCTLGEGGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWA 190 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 191 RDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|284008814|emb|CBA75576.1| quorum-sensing transcriptional activator [Arsenophonus nasoniae] Length = 257 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 68/232 (29%), Gaps = 20/232 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + L +A +N + + NY +I D Sbjct: 27 IKNYLDRELAVFGEFRYAYIILNKRNPAE-----LFAITNYPDQWVEIYKERNYQQIDPV 81 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--F 134 + + + P W + G F + ++ + Sbjct: 82 VIFALNRVSPFEWDE-SLSINSNVDFSKIFDISKDYNVVNGYTFVLHDYNNRLAMLSIMM 140 Query: 135 TSEFLMLA-----------NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCL 182 S ++ + ++++ H + + + + ++ + RE L Sbjct: 141 VSSEVVEIKKKIKEHKNDLHMLLLDVHEKITSLYREMIRQNYQNPASGKECFSPRENEIL 200 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T EIA LG+ + TV ++GS KL +N AI + I Sbjct: 201 YWASMGKTYSEIATILGIKLGTVKFHIGSVVKKLGVMNAKHAIRLGVELQLI 252 >gi|148550964|ref|YP_001260394.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] gi|148503375|gb|ABQ71627.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 289 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 79/227 (34%), Gaps = 6/227 (2%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++++L ++ L I + R FAL +D R + Y + + Sbjct: 58 RQATTLDQVKSLLDAIVRQFGFRWFALVH---NVDLKRTTCKALLITTYPVRWIEEIMES 114 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + W I + + + +G P+R+ Sbjct: 115 RLYLEDPVHAACVKTVSGLSWDQIGDYIAPNARQLSILERGRAHGLASGFTMPIRMRDEP 174 Query: 129 NGYVIFTSEFLM-LANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLA 185 + + +++ ++ A L + ++ L+ R+ C+ L Sbjct: 175 DAMFTVARQGDETISSPDLLCARLIGTVAFDQARTLLGPDELANVPIALSPRQIDCIDLV 234 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G + EI + LGLS TV+ Y+ A + R Q + +A+R G Sbjct: 235 AQGKSDWEIGQILGLSRDTVHEYVEGARRRYGVRRRTQLVLRAVRDG 281 >gi|222109041|ref|YP_002551307.1| conjugal transfer regulatory protein [Agrobacterium radiobacter K84] gi|4883686|gb|AAD31600.1| TraR [Agrobacterium radiobacter K84] gi|221727963|gb|ACM31013.1| conjugal transfer regulatory protein [Agrobacterium radiobacter K84] Length = 234 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 69/222 (31%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L + + +A I I + NY D + D Sbjct: 21 LKTGLADVADHFGFTGYAYLHIQHKH--------IIAVTNYHHDWRSLYFDKKFDALDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + +GI P+R S Sbjct: 73 VKRARSRKQVFAWSGEQERPALSKEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 E + + I+A A V + R+S L +E + L+ G T E Sbjct: 133 ERTAIPLDREIDAVAAAAAVGQLHARISFLRTSPTAEDAVWLDPKEATYLRWIAVGKTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ G+ ++V L A + D ++ A AIR I Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDIRSKAHLTALAIRRKLI 234 >gi|306841076|ref|ZP_07473798.1| regulatory protein LuxR [Brucella sp. BO2] gi|306846307|ref|ZP_07478868.1| regulatory protein LuxR [Brucella sp. BO1] gi|306273302|gb|EFM55171.1| regulatory protein LuxR [Brucella sp. BO1] gi|306288886|gb|EFM60191.1| regulatory protein LuxR [Brucella sp. BO2] Length = 258 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 8/228 (3%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 22 SDTLALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAV 81 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA R Sbjct: 82 DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDF---LELFKKRSSAARNLTERETSCLQLAG 186 G +FT E + + + + K +S A LT RE CL+ A Sbjct: 142 GCTVFTFEVDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAA 201 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 202 NGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 249 >gi|206558215|sp|A5VTN1|VJBR_BRUO2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR Length = 259 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 22 SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLITLPATWVARYSSKNYFAI 81 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA R Sbjct: 82 DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +FT E + + K +S A LT RE CL+ Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250 >gi|257484466|ref|ZP_05638507.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013268|gb|EGH93324.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 240 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 71/228 (31%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y + L N D G Sbjct: 21 TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ + + + V I++ Sbjct: 75 QREFITQDPVIRCYRNQLGFVNWQDAFRHYPVSACYEEIVDTCE---LLPAISYGYMNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V + + E ++ + + +R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|293393478|ref|ZP_06637789.1| transcriptional activator protein CarR [Serratia odorifera DSM 4582] gi|291424079|gb|EFE97297.1| transcriptional activator protein CarR [Serratia odorifera DSM 4582] Length = 245 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 15/198 (7%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 I + NY + +I + D + + + P W L Sbjct: 44 INIISNYPDEWVNIYKENNYQHIDPVVIIAFNKIAPFSWDENL-AINSSLKLSKIFNLSR 102 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-EVIIE-----AHGACYQVITDFLEL- 163 G F + + + + E IE + L Sbjct: 103 KYNIINGFTFVLHDPNNNLAMLSIMLDEEKSNEIEENIESNKEKLQMLLISAHDKLISLY 162 Query: 164 -------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +K + + RE L A G T +EIA LG+ TV ++G+ KL Sbjct: 163 REMSQNKDEKIYNDKEIFSHRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKL 222 Query: 217 DAVNRIQAIAKAIRFGYI 234 +N AI I I Sbjct: 223 GVLNAKHAIRLGIELQLI 240 >gi|94497063|ref|ZP_01303636.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|94423435|gb|EAT08463.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] Length = 248 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 12/231 (5%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 K +++L +L + I + R++A ++ ++ + +Y D + Sbjct: 18 IKDATALSDL---MAEITKAMGFRHYALVHHVDLKPAV-----RSVHIVDYPQDWVERFQ 69 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + W ++Q + ++ + + G P + Sbjct: 70 ARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPG 129 Query: 127 HKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQ 183 NG F + ML + + ++ + + + +LTER+ C+ Sbjct: 130 ELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECVA 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T EI++ LG+ TV ++ A + R +A+ G I Sbjct: 190 LVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 240 >gi|307296696|ref|ZP_07576515.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306877825|gb|EFN09050.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 253 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 8/228 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 +++ +L +L + + R F L + I+ + L Y + Sbjct: 22 QRAETLGDLHGTIDAAVRDLGFRWFTLLHNIDLRRGDEQS----LFLTTYPSAWLEEVLE 77 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + W + + + + + +G + P+R Sbjct: 78 ERHYIEDPIHAACARTPSGLAWDRVGDVLELTPRQRGILDRARDHDLASGYSLPIRTPGE 137 Query: 128 KNGYVIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184 L+ E ++ A EL +R+ L+ R+ C+ L Sbjct: 138 PEAIFTAARSRDEPLSAEEVLTARLLGSVAYDRARELLGERAGPLACVPLSPRQVECIAL 197 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G + EI + LGLS TV+ Y+ SA + R Q + +A+R G Sbjct: 198 VAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245 >gi|22127251|ref|NP_670674.1| transcriptional activator [Yersinia pestis KIM 10] gi|45443197|ref|NP_994736.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597561|ref|YP_071752.1| quorum-sensing transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|108806277|ref|YP_650193.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua] gi|108813343|ref|YP_649110.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|149367009|ref|ZP_01889042.1| quorum-sensing transcriptional regulator [Yersinia pestis CA88-4125] gi|153947986|ref|YP_001399708.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162421668|ref|YP_001604810.1| LuxR family transcriptional regulator [Yersinia pestis Angola] gi|165927117|ref|ZP_02222949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165939283|ref|ZP_02227832.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166008826|ref|ZP_02229724.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166212673|ref|ZP_02238708.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402287|ref|ZP_02307757.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419559|ref|ZP_02311312.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425196|ref|ZP_02316949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468622|ref|ZP_02333326.1| transcriptional regulator, LuxR family protein [Yersinia pestis FV-1] gi|170023040|ref|YP_001719545.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186896695|ref|YP_001873807.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218928157|ref|YP_002346032.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92] gi|229836665|ref|ZP_04456830.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides A] gi|229840908|ref|ZP_04461067.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842531|ref|ZP_04462686.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229903808|ref|ZP_04518921.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|270487592|ref|ZP_06204666.1| autoinducer binding domain protein [Yersinia pestis KIM D27] gi|294502863|ref|YP_003566925.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003] gi|21960323|gb|AAM86925.1|AE013939_2 putative transcriptional activator [Yersinia pestis KIM 10] gi|30146756|gb|AAC28703.2| response regulator YtbR [Yersinia pseudotuberculosis] gi|45438065|gb|AAS63613.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590843|emb|CAH22497.1| Quorum-sensing transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|108776991|gb|ABG19510.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|108778190|gb|ABG12248.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua] gi|115346768|emb|CAL19652.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92] gi|149290623|gb|EDM40699.1| quorum-sensing transcriptional regulator [Yersinia pestis CA88-4125] gi|152959481|gb|ABS46942.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|162354483|gb|ABX88431.1| transcriptional regulator, LuxR family [Yersinia pestis Angola] gi|165912757|gb|EDR31385.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165921013|gb|EDR38237.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992165|gb|EDR44466.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166205965|gb|EDR50445.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166962300|gb|EDR58321.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048324|gb|EDR59732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055959|gb|EDR65740.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749574|gb|ACA67092.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186699721|gb|ACC90350.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229679578|gb|EEO75681.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|229690841|gb|EEO82895.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229697274|gb|EEO87321.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705608|gb|EEO91617.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides A] gi|262360896|gb|ACY57617.1| quorum-sensing transcriptional regulator [Yersinia pestis D106004] gi|262364841|gb|ACY61398.1| quorum-sensing transcriptional regulator [Yersinia pestis D182038] gi|270336096|gb|EFA46873.1| autoinducer binding domain protein [Yersinia pestis KIM D27] gi|294353322|gb|ADE63663.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003] gi|320013931|gb|ADV97502.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 247 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 17/201 (8%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 I + +Y + ++ D + P W + E L Sbjct: 43 DIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDE-NITVLSELKLSKIFTLS 101 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLEL 163 G F + + + + L + L L Sbjct: 102 KKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLTL 161 Query: 164 FKKRSSAARN----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ + L+ RE L A G T +EIA ++ TV ++G+ Sbjct: 162 SQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVV 221 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL +N QAI + I Sbjct: 222 KKLGVINAKQAIGLGVELEII 242 >gi|293491178|gb|ADE45143.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 12/214 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + + +L+ + N D + D P +W Sbjct: 39 YDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98 Query: 93 QEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 + + R G+ P+ L + + Sbjct: 99 TDGHCPGVEYVGGQHRQVTRYLCDSDMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLA 158 Query: 148 EAHGA-----CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200 EA + + EL + LT RE CLQ + G TS+ IA L Sbjct: 159 EAQLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNR 218 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TVN +L SA KL A NR++A+ + + + + Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|330954455|gb|EGH54715.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 240 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 71/228 (31%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + + + L + D G+ Sbjct: 21 TITELDGQTAIENALEWLRRECSSERAMFFQFKGPV------LLTFITSSVDDAWGEAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ + + + L I++ Sbjct: 75 QHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V + + E ++ + + +R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ A+ G I Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGGALCRGLI 239 >gi|320329504|gb|EFW85496.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330889863|gb|EGH22524.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gi|330986211|gb|EGH84314.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 240 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y + L N D G Sbjct: 21 TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125 D + + + L + WQ + + + + V E G R Sbjct: 75 QREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAISYGYMNHCRGA 134 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 ++ E ++ + + +R LT RE LQ A Sbjct: 135 DSVTSVCTLGEVGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWA 190 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 191 RDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|187922148|ref|YP_001893790.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713342|gb|ACD14566.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 206 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 62/199 (31%), Gaps = 5/199 (2%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 L PRR + +Y + D P W I Sbjct: 9 YVLTLSNPRRTAIEMIGAHYPREWVQYYEGRDYAATDPVHRAAFIQSTPYRWHDI---AG 65 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQV 156 + + + + G++ PV + + A Q Sbjct: 66 LSKAERRLLDEAKEAGLPGGLSIPVHQADGSVVLFNLSGPLHSVNDAIKSRIACLISTQF 125 Query: 157 ITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + L R A+R LT + CL G TS EIA+ LG S +TV+ ++G A Sbjct: 126 HCELHRLSPISRCRASRLLTPCQIVCLTWVARGKTSAEIAKILGRSHYTVDYHIGKAMQA 185 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L+ +R A A G I Sbjct: 186 LNMCSRTAAAVYASVQGII 204 >gi|326408213|gb|ADZ65278.1| Transcriptional activator, LUXR family [Brucella melitensis M28] gi|326537928|gb|ADZ86143.1| Transcriptional activator protein solR [Brucella melitensis M5-90] Length = 171 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 14/176 (7%) Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D L + + P+IW + + GI+ P Sbjct: 2 AQNYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQ 56 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERE 178 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 57 GVFGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRE 115 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 116 REILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 171 >gi|33636170|emb|CAE45182.1| putative ExpR protein [Pectobacterium atrosepticum] Length = 245 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 20/232 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + + + +A +N I + N+ + +I D Sbjct: 15 IKSQFDTALSHYGDIKYAYMVLNKKKPTE-----ILIISNHHDEWREIYQANNYQQIDPV 69 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + + P W + L G F + + + Sbjct: 70 VIAALNKITPFPWDE-DLLVSTQLKMSKIFNLSREHNITNGYTFVLHDHNNNLVMLSIMI 128 Query: 137 EFLMLAN-EVIIE-----AHGACYQVITDFLEL--------FKKRSSAARNLTERETSCL 182 + + N + +IE + + + L +RS+ ++RE L Sbjct: 129 DESNVNNIDDVIESNKDKLQMTLMNIHAETISLYREMIRSKEDERSNDKDIFSQRENEIL 188 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T +EIA L + TV ++G+ KL +N AI I I Sbjct: 189 YWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIELQLI 240 >gi|145597841|ref|YP_001161917.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides F] gi|145209537|gb|ABP38944.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides F] Length = 247 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 17/201 (8%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 I + +Y + ++ D + P W + E L Sbjct: 43 DIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDE-NITVISELKLSKIFTLS 101 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLEL 163 G F + + + + L + L L Sbjct: 102 KKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLTL 161 Query: 164 FKKRSSAARN----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ + L+ RE L A G T +EIA ++ TV ++G+ Sbjct: 162 SQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVV 221 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL +N QAI + I Sbjct: 222 KKLGVINAKQAIGLGVELEII 242 >gi|256014910|ref|YP_003104919.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] gi|255997570|gb|ACU49257.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] Length = 259 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 74/230 (32%), Gaps = 11/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R Y + L + Sbjct: 22 SDTLALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D ++ + I ++ + + +L E L IA Sbjct: 82 DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSACNPKGVA 141 Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +FT E + + K +S A LT RE CL+ Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250 >gi|294010458|ref|YP_003543918.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673788|dbj|BAI95306.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 248 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 79/226 (34%), Gaps = 12/226 (5%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 K +++L +L + I + R++A ++ ++ + +Y D + Sbjct: 18 IKDATALSDL---MAEITKAMGFRHYALVHHVDLKPAV-----RSVHIVDYPQDWVERFQ 69 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + W ++Q + ++ + + G P + Sbjct: 70 ARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPG 129 Query: 127 HKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQ 183 NG F + ML + + ++ + + + +LTER+ C+ Sbjct: 130 ELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSEWPSLTERQAECVA 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L G T EI++ LG+ TV ++ A + R +A+ Sbjct: 190 LVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRAL 235 >gi|289626430|ref|ZP_06459384.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649584|ref|ZP_06480927.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330866354|gb|EGH01063.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 240 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y + L N D G Sbjct: 21 TISELDGQTAVENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125 D + + + L + WQ + + + + V E G R Sbjct: 75 QREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAISYGYMNHCRGA 134 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 ++ E ++ + + +R LT RE LQ A Sbjct: 135 DSVTSVCTLGEVGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWA 190 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 191 RDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|404833|emb|CAA80427.1| transcriptional activator [Agrobacterium vitis] Length = 234 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L + + +A I I + NY D + D Sbjct: 21 LKTGLADVADHFGFTGYAYLHIQHKH--------IIAVTNYHHDWRSLYFDKKFDALDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + +GI P+R S Sbjct: 73 VKRARSRKQVFAWSGEQERPKLSEEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARN---LTERETSCLQLAGDGYTSE 192 E + + I+A A V + + + A + L +E + L+ G T E Sbjct: 133 ERTAIPLDREIDAVAAAAAVGQLHARISFLRITPTAEDAAWLDPKEATYLRWIAVGKTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ + ++V L A + D ++ A AIR I Sbjct: 193 EIADVEEVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 >gi|224552948|gb|ACN54718.1| PagR [Pantoea agglomerans] Length = 210 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E E Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|62249397|gb|AAX77678.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 245 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 15/198 (7%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 I + N+ + +I + D + + + P W + L Sbjct: 44 ILIISNHHDEWREIYRANNYQHIDPVVITALNKITPFPWDE-DLLVSTQLKMSKIFNLSR 102 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-EVIIE-----AHGACYQVITDFLEL- 163 G F + + + + + N + +IE + + + L Sbjct: 103 EHNITNGYTFVLHDHNNNLVMLSIMIDESNVNNIDDVIENNKDKLQMTLMNIHAETISLY 162 Query: 164 -------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +RS+ ++RE L A G T +EIA L + TV ++G+ KL Sbjct: 163 REMIRNKEDERSNDKDIFSQRENEILYWASMGKTYQEIALILNIKTGTVKFHIGNVVKKL 222 Query: 217 DAVNRIQAIAKAIRFGYI 234 +N AI I I Sbjct: 223 GVLNAKHAIRLGIELQLI 240 >gi|21730643|pdb|1L3L|A Chain A, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna gi|21730644|pdb|1L3L|B Chain B, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna gi|21730645|pdb|1L3L|C Chain C, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna gi|21730646|pdb|1L3L|D Chain D, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna gi|23200109|pdb|1H0M|A Chain A, Three-Dimensional Structure Of The Quorum Sensing Protein Trar Bound To Its Autoinducer And To Its Target Dna gi|23200110|pdb|1H0M|B Chain B, Three-Dimensional Structure Of The Quorum Sensing Protein Trar Bound To Its Autoinducer And To Its Target Dna gi|23200111|pdb|1H0M|C Chain C, Three-Dimensional Structure Of The Quorum Sensing Protein Trar Bound To Its Autoinducer And To Its Target Dna gi|23200112|pdb|1H0M|D Chain D, Three-Dimensional Structure Of The Quorum Sensing Protein Trar Bound To Its Autoinducer And To Its Target Dna Length = 234 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L I + +A I + I + NY D Sbjct: 21 LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHRQWQSTYFDKKFEALDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W E + + +GI P++ S Sbjct: 73 VKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFXSXFTXAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 + ++ + I+A A + + R++ L +E + L+ G T E Sbjct: 133 DKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTXE 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ G+ ++V L A + D ++ A AIR I Sbjct: 193 EIADVEGVKYNSVRVKLREAXKRFDVRSKAHLTALAIRRKLI 234 >gi|238653897|emb|CAV30841.1| Transcriptional Regulator, LuxR family [magnetite-containing magnetic vibrio] Length = 261 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 6/218 (2%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 + + F ++L I NY + D L + D H Sbjct: 42 ALLEEVGRHGFDWAMYGFGRRRNDSEELEITYFSNYSKEWQDEYEKLGGSQNDIDTLHCI 101 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH--KNGYVIFTSEFL 139 S I+ S + + + GI+FP+R G G + ++ Sbjct: 102 SSTEDQIFFSPETRENLTPEQKAIDEFAQRSGIKNGISFPLRAGPDINDWGGLGLSTRMD 161 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAE 196 +++ ++I + A+N LTE+E L L G +++IA+ Sbjct: 162 DDEFSAVLDERRDYLRLIAQVFHAVTQSRPLAKNALLLTEKEKQALSLTAKGLKTKQIAD 221 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KLG+S V+ ++ AT KL + R QA+A+AIR + Sbjct: 222 KLGMSDKAVDQHIARATAKLASTTRTQAVAEAIRLHIL 259 >gi|77461110|ref|YP_350617.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385113|gb|ABA76626.1| LuxR family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 79/235 (33%), Gaps = 14/235 (5%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 K+ + +E+ +++ F I + ++N+ + Sbjct: 8 QIKQLTRAKEIESAFPILRTFANNIGFQFCGIQVSRPESPSF-KPFHINNFTKAWNEE-Y 65 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP-VRLG 125 + D + + +LP +W + G + + Sbjct: 66 ENNYSEEDPITSYCHQSMLPFLWNRKAFSKAPQ-----MWNALRNHGMEHGWSQSYLNEE 120 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERET 179 + + + + +G + + ELF L+ RE Sbjct: 121 NDLCCTISLARPQSEIFALELYDQYGVMHFITQHLSELFVHALPPVPAKPPPVRLSTREL 180 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L G T+ EI + L ++ TVN ++ + VKL+A N++ AI KA + G++ Sbjct: 181 EIVRLCAYGKTAWEIGQILNVAERTVNYHIKNLIVKLNACNKMSAIVKASKLGFL 235 >gi|224552951|gb|ACN54720.1| PagR [Pantoea agglomerans] gi|224552954|gb|ACN54722.1| PagR [Pantoea agglomerans] gi|224552957|gb|ACN54724.1| PagR [Pantoea agglomerans] gi|224552960|gb|ACN54726.1| PagR [Pantoea agglomerans] Length = 210 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E E Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLTKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|154813|gb|AAA64793.1| regulatory protein [Plasmid Ti] Length = 234 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 68/222 (30%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L I + +A I + I + NY D Sbjct: 21 LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHRQWQSTYFDKKFEALDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W E + + +GI P++ S Sbjct: 73 VKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSE 192 + ++ + I+A A + + R++ A + +E + L+ G T E Sbjct: 133 DKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAACVDPKEATYLRWIAVGKTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ G+ ++V L + D ++ A AIR I Sbjct: 193 EIADVEGVKYNSVRVKLRERMKRFDVRSKAHLTALAIRRKLI 234 >gi|464918|sp|P33909|TRAR_AGRVI RecName: Full=Transcriptional activator protein traR gi|404827|emb|CAA80423.1| transcriptionnal activator [Agrobacterium vitis] gi|404830|emb|CAA80425.1| transcriptional activator [Agrobacterium vitis] Length = 234 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 69/222 (31%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L + + +A I I + NY D + D Sbjct: 21 LKTGLADVADHFGFTGYAYLHIQHKH--------IIAVTNYHHDWRSLYFDKKFDALDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + +GI P+R S Sbjct: 73 VKRARSRKQVFAWSGEQERPKLSEEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARN---LTERETSCLQLAGDGYTSE 192 E + + I+A A V + + + A + L +E + L+ G T E Sbjct: 133 ERTAIPLDREIDAVAAAAAVGQLHARISFLRITPTAEDAAWLDPKEATYLRWIAVGKTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ + ++V L A + D ++ A AI+ I Sbjct: 193 EIADVEEVKYNSVRVKLREAMKRFDVRSKAHLTALAIKRKLI 234 >gi|46275753|dbj|BAD15091.1| probable transcriptional regulator [Pseudomonas azotoformans] Length = 202 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 12/198 (6%) Query: 49 QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQ 103 + +L N D + D S + P +W + + Sbjct: 3 PSVLQLRNTPPDWHALWCSEGFYQIDPVQHLALSRVSPFVWSYDVKADTPLQKIIDPCHA 62 Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVI-----FTSEFLMLANEVIIEAHGACYQVIT 158 G++ P+ L + L A + + + + + Sbjct: 63 PVSSYLHDQQLTCGVSVPIHLPRGGFASLTGLRTGNARNVLQDAQQTLSDFGLISHALQE 122 Query: 159 DFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LF + R+ +LT+RE CL+ A DG T+ EIA +L S+ V +L SA KL Sbjct: 123 AAYPLFSKELRTYPHIHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKL 182 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR+QA+ +A + + Sbjct: 183 GAKNRVQAVVRATHYRLL 200 >gi|307135373|gb|ADN33401.1| HanR [Halomonas anticariensis] Length = 252 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F +++ P + + NY + + D L H N Sbjct: 46 GFEFFSLVLRPCIPFTNNYLYIIDNYGCEWEGLYQDKKFWTIDPVLQHKNYVNK----SG 101 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEA 149 I E + R +G++F V V S N+ + Sbjct: 102 ILWENSLFDKSNELWRSAEDFGLCSGMSFLVSFSDMPVRGVFSISSKDYYYANNQDVKMQ 161 Query: 150 HGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + ++ K + ++ L+ RE L+ + DG TS EI++KL ++ Sbjct: 162 RYNVCPLSIKVMDCIKGKVDVGKSVANPVFLSVREADILRYSADGLTSSEISKKLYVTKS 221 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T++ ++ +A KL N++QA++KA+ + Sbjct: 222 TIDFHIKNAIDKLGCKNKVQAVSKALLLDIL 252 >gi|224552981|gb|ACN54740.1| PagR [Pantoea agglomerans] Length = 210 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRSIEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E + Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVN 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|224552933|gb|ACN54708.1| PagR [Pantoea agglomerans] Length = 210 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E ++ Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRLKIVS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|298717240|ref|YP_003729882.1| transcriptional activator protein PagR [Pantoea vagans C9-1] gi|298361429|gb|ADI78210.1| Transcriptional activator protein PagR [Pantoea vagans C9-1] Length = 230 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 73/240 (30%), Gaps = 18/240 (7%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 M + +K +SL + L + +Y Q I N + Sbjct: 1 MKDTYYNDQKINSL--IKDELDAFFEDYQG---VIYAYAIMNKKDPSQMQII---NNNPA 52 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D+ + D + + W++ + + ++ + G F Sbjct: 53 WFDVYLERKYQFIDPVIIRGLRCVEDYFWENEVILSEGYNLTRIFNESFQ-YNIYRGQTF 111 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARN-L 174 P+ + + + + I+ H + L L+ + L Sbjct: 112 PLHDYLNNLVVLSVIGKK---EFDFDIDKHRAKFMSFLIHLHQKTLNLYSQHQQKKNAFL 168 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L+ DG T EIA L ++ TV ++G+ KL N AI + Sbjct: 169 SPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAIKLGAELRLL 228 >gi|332188808|ref|ZP_08390518.1| sigma-70, region 4 family protein [Sphingomonas sp. S17] gi|332011161|gb|EGI53256.1| sigma-70, region 4 family protein [Sphingomonas sp. S17] Length = 239 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 64/220 (29%), Gaps = 7/220 (3%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L + F +YT D +++ ++ + + Sbjct: 22 AETLHATVRAYAAPFGYGRFVIYTAPPPGDGAV-DRILWLEGDWFGNGHRVNAA-TYLAR 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 H P W ++ V G G+ P+ G V Sbjct: 80 CPVNRHVLETDRPFFWTK---NGTADAETYRVVPHPKGPGI-HGLQVPIFSHVGLAGAVS 135 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSE 192 F + A + + L + A L+ RE ++ G Sbjct: 136 FGGRTIDSAIDTRLALTLVGTAAFHVAERLAGSVVAHAMPQLSAREREVIRWIASGRRQA 195 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++A LGLS T+ +L +L A + QAI +R G Sbjct: 196 DVAALLGLSERTIENHLRRIRNRLGAASTAQAIHLLVRSG 235 >gi|16119952|ref|NP_396657.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|1730017|sp|P54294|TRAR_AGRT5 RecName: Full=Transcriptional activator protein traR gi|299361|gb|AAB26028.1| TraR=tra gene transcriptional activator [Agrobacterium tumefaciens, Ti plasmid pTiC58, Peptide Plasmid, 234 aa] gi|3153172|gb|AAC17192.1| TraR [Agrobacterium tumefaciens str. C58] gi|15163626|gb|AAK91098.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 234 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 66/222 (29%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L + +A I NY D D Sbjct: 21 LKDGLADLAEHFGFTGYAYLHIQHKHTIAVT--------NYHRDWRSAYFENNFDKLDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + + +GI P++ S Sbjct: 73 VKRAKSRKHVFAWSGEQERSRLSKEERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 E + + I+A A V + +++ L +E + L+ G T E Sbjct: 133 ERPAIDLDREIDAAAAAGAVGQLHARISFLQTTPTVEDAAWLDPKEATYLRWIAVGMTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A+ G+ ++V L A + D ++ A AIR I Sbjct: 193 EVADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 >gi|238749708|ref|ZP_04611213.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380] gi|238712363|gb|EEQ04576.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380] Length = 244 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 ++++ + ++ +N + + NY LD D Sbjct: 13 EDINNYIQRRIKAYGDLRYSYLVMNKKIPL-----HPAIISNYPLDWVREYQKNSYHLID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + P W +S+ +L G F + + + Sbjct: 68 PVILTARDKISPFSWDDNSV-INKKSTESAVFKLAREYNIVNGYTFVLHDNSNNMATLNI 126 Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLEL---------FKKRSSAARNLTERET 179 + + + IE L L + + RE Sbjct: 127 SNGNDDSIFFDENIEKYKEKIQMLLILTHEKMLGLYHNNSINNELHGSNIKKDIFSPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EI+ L + TV ++G+ KL +N AI I I Sbjct: 187 EILYWASVGKTYSEISIILEIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241 >gi|446400|prf||1911406A traR protein Length = 233 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 67/222 (30%), Gaps = 13/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L + +A I NY D D Sbjct: 21 LKDGLADLAEHFGFTGYAYLHIQHKHTIAVT--------NYHRDWRSAYFENNFDKLDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + + +GI P++ S Sbjct: 73 VKRAKSRKHVFAWSGEQERSRLSKEERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 E + + I+A A V + +++ L +E + L+ G T E Sbjct: 133 ERPAIDLDREIDAAAAAGAVGQLHARISFLQTTPTVEDAAWLDPKEATYLRWIAVGMTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A++ G+ ++V L A + D ++ A AIR I Sbjct: 193 EVADE-GVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 233 >gi|71736138|ref|YP_274051.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556691|gb|AAZ35902.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 240 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 13/230 (5%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y + L N D G Sbjct: 21 TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES--SGQLSVRLEGGLLPFAGIAFPVRL 124 D + + + L + WQ + + + + + + G R Sbjct: 75 QREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVVTCELLPAISY-GYMNHCRG 133 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 ++ E ++ + + +R LT RE LQ Sbjct: 134 ADSVTSVCTLGEVGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQW 189 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 190 ARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|10954936|ref|NP_053356.1| hypothetical protein pTi-SAKURA_p118 [Agrobacterium tumefaciens] gi|6498289|dbj|BAA87741.1| tiorf116 [Agrobacterium tumefaciens] Length = 234 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 66/222 (29%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L + +A I NY D D Sbjct: 21 LKDGLADLAEHFGFTGYAYLHIQHKHTIAVT--------NYHRDWRSAYFENNFDKLDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + + +GI P++ S Sbjct: 73 VKRAKSRKQVFAWSGEQERSRLSKEERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 E + + I+A A V + +++ L +E + L+ G T E Sbjct: 133 ERPAIDLDREIDAVAAAGAVGQLHARISFLQTTPTVEDAAWLDPKEATYLRWIAVGMTME 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A+ G+ ++V L A + D ++ A AIR I Sbjct: 193 EVADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 >gi|85058263|ref|YP_453965.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] gi|84778783|dbj|BAE73560.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 22/216 (10%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 FA + N + D NY + + D L + ++ WQ Sbjct: 35 RFAYFIFNKSQDE-----KPVIYSNYPKEWVEKYMKNKLYKQDPVLLVASQKIMSFPWQK 89 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII---- 147 + + G FP+ + + + + ++ Sbjct: 90 NYFK-KTKHQKSNIFAQSSEYNITRGYTFPLHDHENNLAMLSL---YTESDPDQLMKCIS 145 Query: 148 ----EAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKL 198 + + FL ++++ + + LT RE L A G T EIA + Sbjct: 146 DHEDRLYLLFLSIHNRFLAEKAQQTNTSNTKIEKRLTSREIEALHWASIGKTYREIAIIM 205 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++ TV ++G+ VKLD +N AI KA + Sbjct: 206 GITESTVKFHIGNLIVKLDVINAKHAIKKATDLHLL 241 >gi|291617509|ref|YP_003520251.1| EanR [Pantoea ananatis LMG 20103] gi|151175682|dbj|BAF69065.1| AHL-dependent transcriptional regulator [Pantoea ananatis] gi|291152539|gb|ADD77123.1| EanR [Pantoea ananatis LMG 20103] gi|327393946|dbj|BAK11368.1| transcriptional activator protein EanR [Pantoea ananatis AJ13355] Length = 249 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 65/235 (27%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 L + + + +A ++ + + + +Y + + D Sbjct: 13 DTLQTYIQRKLSSFGSPEYAYTVVSK-----KNPSNVLIISSYPDEWVRLYRANNFQLTD 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + P W + L G + + + + Sbjct: 68 PVILTAFKRTSPFAWDENITLMSDLRFTK-IFSLSKQYNIVNGFTYVLHDHMNNLALLSV 126 Query: 135 T--SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERET 179 + + G ++ DF E + + A + RE Sbjct: 127 IIKGNDQAALEQRLASEQGTMQMLLIDFNEQMYRLAGAEAERAPTVNQNADKTIFSSREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA G+SV TV ++ + VKL N QAI + I Sbjct: 187 EVLYWASMGKTYSEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDLI 241 >gi|15967032|ref|NP_387385.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15076305|emb|CAC47858.1| Putative transcription regulator [Sinorhizobium meliloti 1021] Length = 184 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 56/177 (31%), Gaps = 9/177 (5%) Query: 67 ILIETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 D + W+ + + F G FPV Sbjct: 7 RKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGYIFPVH 66 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTER 177 G + + L+ + ++ LEL + S +T R Sbjct: 67 GRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRR 126 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L DG TS +I + L +S HTV+ Y+ KL A NR +A A R G I Sbjct: 127 EMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLGLI 183 >gi|240142578|ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] gi|240012525|gb|ACS43750.1| Hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] Length = 265 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 80/253 (31%), Gaps = 31/253 (12%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + +L L ++ +FA ++ + ++I + Sbjct: 16 IDAAKTSADLPGILQATASKAGFDSFAF--LDGRAETSVGGRII---TTVAPAWQETYAR 70 Query: 68 LIETYGDDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + P W + E+ ++++ + + G+ P+ + Sbjct: 71 ENLAAHDPCVRRVAESNSPFFWSDIVLPEDDRRPDLTRMTMTAARDMGYYDGLVMPLHMA 130 Query: 126 FHKNGYVI-----FTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSSAARN-- 173 ++ F ++ VI +L + + ++ Sbjct: 131 DANGVRMLSSLSLFWADGSEDVRRVIGPRGPAVVKMLAAAWAQKLSDLGEAEAKPVQSPA 190 Query: 174 ------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE L A G T++E + L L TV+ +L +A KL A N+ Sbjct: 191 KVLTGLFGRPPKLTSREVDVLSWAAKGKTADETSVILALGRETVHTHLSNACRKLQASNK 250 Query: 222 IQAIAKAIRFGYI 234 A+A A+ I Sbjct: 251 THAVAMAVHRRLI 263 >gi|306842528|ref|ZP_07475179.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] gi|306287384|gb|EFM58864.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] Length = 171 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 14/176 (7%) Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D L + + P+IW + + GI+ P Sbjct: 2 AQNYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQ 56 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERE 178 G + F L I Q++T+ L L ++ A +LT RE Sbjct: 57 GVFGLLSFVRAGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRE 115 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 116 REILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 171 >gi|303248220|ref|ZP_07334483.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302490358|gb|EFL50269.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 258 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 6/225 (2%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S Q + +++ + + + + L+ + C ++ Sbjct: 35 RSRQAFAHLFPKLRSLLPFDHA--LAVIARLEDQTALAIDCCNISFPEQWLRAYTAADAF 92 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 GD + SG P+ W ++ L A + P+ + Sbjct: 93 AGDAIVRQALSGPAPLHWAETTPRLPRPNALSLCRDFRMRQGWVA-ASAPLF-AARERAL 150 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGY 189 F E + + + L+ RE L +G Sbjct: 151 FCFAGEVGRHDRRSAAILGHLLPHLHLALSQTLRASVPDREPIALSRREREVLDWLKEGK 210 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +IA LG+ TV ++ + KL AVNR Q +A A+R G I Sbjct: 211 SSWDIAMVLGIRERTVRFHVANLMRKLGAVNRAQTVALALRRGLI 255 >gi|224552909|gb|ACN54692.1| PagR [Pantoea agglomerans] Length = 210 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + + DI + D + + W++ + + ++ F Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86 Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173 G FP+ + + S + + E + ++ L L+ + Sbjct: 87 QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNA 146 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206 Query: 233 YI 234 + Sbjct: 207 LL 208 >gi|238794186|ref|ZP_04637801.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] gi|238726476|gb|EEQ18015.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] Length = 214 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 17/201 (8%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 I + +Y + DI D + P W + E L Sbjct: 10 DIFIVTSYPNEWADIYTTHNYQLIDPVVLTAFRRFSPFSWDE-NITVLSELKLSKIFALS 68 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLEL 163 G F + + + + + + L L Sbjct: 69 KKYNIVNGFTFVLHDTMNNLAMLSLIMDDDVQKEVEGRVVNDRDRLQMVLIETHEKMLTL 128 Query: 164 FKKRS----------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + S+ L+ RE L A G T +EIA G++ TV ++G+ Sbjct: 129 SQNKINVLGLKGTGISSKTLLSPRENEVLHWASMGKTYQEIALITGITSRTVKYHIGNVV 188 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL +N QAI + I Sbjct: 189 KKLGVINAKQAIRLGVELELI 209 >gi|163760319|ref|ZP_02167402.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162282718|gb|EDQ33006.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 208 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 77/219 (35%), Gaps = 13/219 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 + + + +F L +++ D P LHN D + D Sbjct: 2 DFFRLFKALAAVHDSEHFVLVELSTD-DKPLDLNRGHSLHNVSDAFLDA-EAVSAKRDDP 59 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + P + + +T L + + P+ K +I Sbjct: 60 LVACLLTSTAPKSFDATTTKT----------PLIARCGSKSAVVVPLHTAVGKRFGLILL 109 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + V + E+ S L+ERE + +G TS EIA Sbjct: 110 RNRERPLHSEVALIAYDASIVFQRYFEVVLSLDS-ISGLSEREIQIVSWTSEGKTSSEIA 168 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LGLS HTVN+Y+ + KL VNR Q +A A+R G I Sbjct: 169 IILGLSEHTVNSYIAAILRKLQVVNRAQMVASALRNGLI 207 >gi|224552969|gb|ACN54732.1| PagR [Pantoea agglomerans] gi|224552972|gb|ACN54734.1| PagR [Pantoea agglomerans] Length = 210 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E + Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L+ + + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|317491518|ref|ZP_07949954.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921065|gb|EFV42388.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 246 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 72/236 (30%), Gaps = 23/236 (9%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L + ++ + +A +N + + + +Y + ++ + D Sbjct: 13 ETLRDYIDRKLSQFGSPEYAYTVVNK-----KNPSKLLIISSYPDEWVNLYIANNLQHID 67 Query: 75 DFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + P +W I + ++ S S L G F + + + Sbjct: 68 PVILTAFKRTSPFVWDENITLMSDLKVSKIFS--LSKKYNIANGYTFVLHDHLNNLALLS 125 Query: 134 FT-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARN---------LTERE 178 + E ++ L + S T RE Sbjct: 126 LIIDSNMKANLEEQFSSEKGNLQMLLIEINEQMYRLVQSVSVDKDGSEMGVSKATFTARE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA +G+SV TV ++G+ KL N QAI + I Sbjct: 186 HEVLYWASMGKTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELELI 241 >gi|220920961|ref|YP_002496262.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945567|gb|ACL55959.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 242 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 63/220 (28%), Gaps = 15/220 (6%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 + +R+ R A ++ A Q Y + D + Sbjct: 29 RMADRMGYRWIAYLSMTDA-------QEHEITSTYAPPWVEHYFANNYEQIDPCVLASRE 81 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 P W S+ I + AGI P+ + ++ Sbjct: 82 QSQPFRWGSLGPPIEIPENVLRLYDDARSYGIRAGITIPILGPSGRWSAFTMATDESETE 141 Query: 143 NEVII------EAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEI 194 Q L + S+ R LT+ + CLQ +G + Sbjct: 142 ALARQTDYLTSMMTMMALQFHARLLITAPRFSAETRPKLLTDVQARCLQAVANGEPMKVA 201 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +LGL+ TV +L A +L A N + A G I Sbjct: 202 AHELGLTHRTVIHHLNMARKRLGAKNITHTVKTAFHLGLI 241 >gi|86359865|ref|YP_471756.1| conjugal transfer transcriptional regulator protein [Rhizobium etli CFN 42] gi|28453858|gb|AAO43545.1| transcriptional activator protein TraR [Rhizobium etli CFN 42] gi|86283967|gb|ABC93029.1| conjugal transfer transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 239 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 68/217 (31%), Gaps = 9/217 (4%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 ++N A Y A R +NY D + T D + Sbjct: 28 VALRNYGAAFGLERYAYLEASGAEVR-----TFNNYPKDWQEAYLSGHYTRIDPVVTEAK 82 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 W + S + +G+ F + + F + Sbjct: 83 RRQEAFGWTADNWPARGTSDLRKFREQAVDHGLRSGVTIGTDGSFGSHLMLTFATSEART 142 Query: 142 ANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + A ++ L + + + R L+ RE +CL A G T+ E A Sbjct: 143 DLVEMQQTFQALQALLVVHYRLRFIAARTQLAPKRTLSPREMTCLLWATKGKTAPETAML 202 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++ TV YL A K DA + Q +A A G + Sbjct: 203 TGINARTVQHYLDKAREKFDAQSVPQLVAIAKDRGLL 239 >gi|283786604|ref|YP_003366469.1| quorum sensing transcriptional regulator CroR [Citrobacter rodentium ICC168] gi|282950058|emb|CBG89690.1| quorum sensing transcriptional regulator CroR [Citrobacter rodentium ICC168] Length = 230 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 7/188 (3%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + ++N DI + D + S + W++ + + ++ Sbjct: 44 MRIINNNPQ-WFDIYLERKYQFIDPVIIRALSSVEDFYWENKVLLSGGYNLTRIFNES-S 101 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + G FP+ + + S + + H Q+ L L+ K Sbjct: 102 EHNIYQGHTFPLHDYLNNLVVLSIISHKDSGIDMTANRSYFMHFLV-QLHQKTLNLYSKV 160 Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ RE L+ G T E++ L ++ TV ++ +A KL N A+ Sbjct: 161 HQKKNVFLSPRERQILKWVSAGKTYAEVSLILSITERTVKFHMSNAMKKLGVNNARHAVK 220 Query: 227 KAIRFGYI 234 + + Sbjct: 221 LGMELRLL 228 >gi|224552996|gb|ACN54750.1| PagR [Pantoea sp. C9-1] Length = 210 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + D+ + D + + W++ + + ++ + Sbjct: 28 NNNPAWFDVYLERKYQFIDPVIIRGLRCVEDYFWENEVILSEGYNLTRIFNESFQ-YNIY 86 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSA 170 G FP+ + + + + I+ H + L L+ + Sbjct: 87 RGQTFPLHDYLNNLVVLSVIGKK---EFDFDIDKHRAKFMSFLIHLHQKTLNLYSQHQQK 143 Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ DG T EIA L ++ TV ++G+ KL N AI Sbjct: 144 KNAFLSPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAIKLGA 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|224552978|gb|ACN54738.1| PagR [Pantoea agglomerans] Length = 210 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + E + Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISHKDSGIDMEKNRSKIVS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L+ + L+ RE L+ G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVXAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|212638021|ref|YP_002314541.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559501|gb|ACJ32556.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 208 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCL 182 Y++ TS+ +AN + HG +V + +K S LT RE L Sbjct: 96 AGAVSYMLKTSKASEIANAIRATFHGQSVFEPEVTGKMMNSMRKPSLPHEQLTSREMEVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T++EIAE+L +S+ TV ++ + KLD +R QA+ A + G + Sbjct: 156 LLIAQGKTNQEIAEELFISLKTVKVHVSNILAKLDVQDRTQAVIYAFKHGLV 207 >gi|37223205|gb|AAQ90198.1| LuxR [Aliivibrio fischeri] Length = 222 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 70/196 (35%), Gaps = 11/196 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +++ L I I + Y + + + NY + D Sbjct: 24 DINQCLSEIAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDP 80 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + S PI W + E+ I+ ++ G +FP+ + G + F Sbjct: 81 VVDYSKSHHSPINWN-VFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFA 139 Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + + H ++ ++ ++ R + LT+RE CL A +G Sbjct: 140 HSDKDIYTDSLF-LHASTNVPLMLPSLVDNYQKINLTRKKSDSILTKREKECLAWASEGK 198 Query: 190 TSEEIAEKLGLSVHTV 205 ++ +I++ LG S TV Sbjct: 199 STWDISKILGCSERTV 214 >gi|190410128|ref|YP_001965652.1| probable transcription activator TraR [Sinorhizobium meliloti] gi|125631158|gb|ABN47159.1| probable transcription activator TraR [Sinorhizobium meliloti SM11] Length = 237 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 14/222 (6%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 + L + +R + +A + C + N D + Sbjct: 26 VKAALEGLADRFEFSGYAYTKLLPG--------EFCVISNLHPDWLKRKRKFDLDRRNPV 77 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L +W +E + Q +GI P+ + + F S Sbjct: 78 LRRAQQSRRAFVWS--SQEENLSEEDQSFFGCAAKFEIRSGITIPIAISNGAISALSFVS 135 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 +L + I+ A V + + + + + LT +E + + G T E Sbjct: 136 PKPVLTAQEEIDPIAASSAVGQLHARIEQLKVAPSIQEPFYLTPKEGTYTRWLSLGKTVE 195 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + A+ + +TV L A + D N Q +A AIR G + Sbjct: 196 DTADIEHVKYNTVRIALAEARRRYDLCNNTQLVALAIRRGLV 237 >gi|331005380|ref|ZP_08328764.1| Transcriptional activator protein vanR [gamma proteobacterium IMCC1989] gi|330420834|gb|EGG95116.1| Transcriptional activator protein vanR [gamma proteobacterium IMCC1989] Length = 271 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 8/231 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++S++EL +I + A I+ + L +HN Sbjct: 42 QHANSIKELFAMYEVIMKHYGFDHLAHAVISDHDELKNGSALGLTVHNELNGWEKHYLEQ 101 Query: 69 IETYGD--DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + +G W ++ + ++G+ + Sbjct: 102 NYIAIDLAPQITYSKAGF--FTWHD-MKQQALSREQSAIFNEAEDFKLYSGVNVSIHNAN 158 Query: 127 HKNGYVIFTSEFLMLANEVII--EAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQ 183 +I S + + +Q T FL L K + LT++E L+ Sbjct: 159 GVKCVIIAASNQQGFSVNQYTKDIVNLLAHQFNTCFLSLTKHELIQKKIPLTQKEEEILK 218 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EI +K+ +S HTV+ Y+ S K+ N + + KAI+ I Sbjct: 219 WISKGLSKPEIGDKMNISSHTVSYYMRSIFKKMGTNNTVSTVIKAIKEELI 269 >gi|307944862|ref|ZP_07660200.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] gi|307772076|gb|EFO31299.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] Length = 240 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 73/232 (31%), Gaps = 12/232 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S+ +L F L N + Sbjct: 13 ISNETDLKSVWAKACGYFSGHGFNSLIYADINSIGES----LILSNAPTQWIEHYEASGY 68 Query: 71 TYGDDFLFHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAGIA--FPVRLGF 126 D F + + + + ++ + + AG + F Sbjct: 69 ASCDPFFKYCCNTYGSLRTGSAYLSRYKYLQPKERQLILDASEAGLTAGFSSVFRTNGTN 128 Query: 127 HKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G+ I + ++V+ E H + ++ S+A LT RE CL Sbjct: 129 GCGGWNILSDAGSEHVDQVLQDREAEFHFLANFLHLRMKDVALHAHSSAPVLTRRELECL 188 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G + E+A+KL +S TV ++ +A KL A R QA+A+A+ + Sbjct: 189 KWLSAGLRTAELADKLAISGPTVEFHIKNAREKLSAKTREQAVARAVSLKLL 240 >gi|270264188|ref|ZP_06192455.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] gi|270041837|gb|EFA14934.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] Length = 249 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L + + + + +A + + + + +Y + D+ D Sbjct: 13 ETLRDHIDRKLSSLGSPEYAYTVVRK-----KNPSDVLIISSYPDEWVDLYRANNFQLTD 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + P W + L G F + + + Sbjct: 68 PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLSKQYNIINGFTFVLHDHMNNLALLSV 126 Query: 135 TSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTERET 179 + + L SS+ + T RE Sbjct: 127 IIANNGQEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA G+SV TV ++G+ VKL N QAI + I Sbjct: 187 EVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241 >gi|39979986|gb|AAR32909.1| SplR [Serratia plymuthica] Length = 249 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 71/235 (30%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L + + + + +A + + + + +Y + D+ D Sbjct: 13 ETLRDHIDRKLSSLGSPEYAYTVVRK-----KNPSDVLIISSYPDEWVDLYRANNFQLTD 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI- 133 + P W + L G F + + + Sbjct: 68 PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLSKQYNIINGFTFVLHDHMNNLALLSV 126 Query: 134 -FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERET 179 S + + GA ++ D E + + AA + T RE Sbjct: 127 IIASNGQEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA G+SV TV ++G+ VKL N QAI + I Sbjct: 187 EVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241 >gi|224552984|gb|ACN54742.1| PagR [Pantoea agglomerans] Length = 210 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E E G Sbjct: 66 ILSGGYNLTRIFNESNQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVG 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLVNLHQKTLNLYSQHYQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|114217274|dbj|BAF31200.1| AHL-dependent transcriptional regulator [Serratia marcescens] gi|172044716|gb|ACB69923.1| SpnR [Serratia marcescens] Length = 247 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 60/235 (25%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L + + +A ++ + + + Y + ++ D Sbjct: 13 ETLREYIDRKLSSFGRLEYAYTVVSK-----KNPSDVLIISTYSDEWVELYRTNNFQLTD 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + P W + L G F + + + Sbjct: 68 PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLAKHYNIVNGFTFVLHDHMNNLALLSV 126 Query: 135 T------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTERET 179 E + L SS + T RE Sbjct: 127 IIANNEQGELEARLTSERGAIQILLIDINEQMYRLAGASSSGRQRHHMDMVKPIFTPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + G T EIA G+S+ TV ++G+ KL N QAI + I Sbjct: 187 EVLYWSSMGKTYGEIAAIAGISISTVKFHMGNIVSKLGVSNARQAIRLGVELELI 241 >gi|17989461|ref|NP_542094.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|17985340|gb|AAL54358.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] Length = 235 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 74/226 (32%), Gaps = 11/226 (4%) Query: 19 PRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L I++ I R Y + L + D Sbjct: 2 ALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAIDPVF 61 Query: 78 F----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 ++ + I ++ + + +L E L IA R G + Sbjct: 62 QEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTV 121 Query: 134 FTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 FT E + + K +S A LT RE CL+ A +G Sbjct: 122 FTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRWAANG 180 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 181 KTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 226 >gi|224552912|gb|ACN54694.1| PagR [Pantoea agglomerans] gi|224552930|gb|ACN54706.1| PagR [Pantoea agglomerans] gi|224552963|gb|ACN54728.1| PagR [Pantoea agglomerans] gi|224552966|gb|ACN54730.1| PagR [Pantoea agglomerans] Length = 210 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + + DI + D + + W++ + + ++ F Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86 Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173 G FP+ + + S + + E + ++ L L+ + Sbjct: 87 QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNV 146 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206 Query: 233 YI 234 + Sbjct: 207 LL 208 >gi|224552903|gb|ACN54688.1| PagR [Pantoea agglomerans] gi|224552906|gb|ACN54690.1| PagR [Pantoea agglomerans] Length = 210 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + + DI + D + + W++ + + ++ F Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86 Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173 G FP+ + + S + + E + ++ L L+ + Sbjct: 87 QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNV 146 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206 Query: 233 YI 234 + Sbjct: 207 LL 208 >gi|317054416|ref|YP_004118441.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] gi|316952411|gb|ADU71885.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 243 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 10/195 (5%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 I + + + D + + + + P+IW + +++ L Sbjct: 43 DIMVISDIPDYFESVYLKNRYQSIDPIIINALNRVSPVIWDETLIVNSQWTIRKITDSLR 102 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF-TSEFLMLANEV-----IIEAHGACYQVITDFLEL 163 +G F + + + ++FL + + G L L Sbjct: 103 PDYNIVSGHTFVLHDQNNYLAVLSLYVNKFLEPEIDDKVKKHRNDLQGVLIDTHEMLLHL 162 Query: 164 FK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + S L+ RE L + G T EIA L ++V TV ++G KL Sbjct: 163 YHEENVRTSRHDDTLSARENEILYWSSTGKTYPEIARMLDITVSTVKFHMGKIVKKLGVN 222 Query: 220 NRIQAIAKAIRFGYI 234 N AI+ AI I Sbjct: 223 NAKHAISLAIELNII 237 >gi|222083272|ref|YP_002542675.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738652|gb|ACM39490.1| transcriptional regulator [Agrobacterium vitis S4] Length = 234 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 12/218 (5%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L + +A I NY + D + Sbjct: 25 LADLTQHFGFTGYAYLHIQHKHTIAVT--------NYHREWRSTYFDKHFDKLDPVVKRA 76 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 S W Q+ + +G+ P++ SE Sbjct: 77 KSRKQVFAWSGEQDRARQSKEERAFYAHAADFGIRSGVTVPIKTANGSMSMFTLASEKPA 136 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAE 196 + + I+A A V + +++ L +E + L+ G T EEIA+ Sbjct: 137 IDLDREIDAVAAAAAVGQLHARISFLQTTPTVEDAAWLDPKEATYLRWIAVGMTMEEIAD 196 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+ ++V L A + D ++ A AIR I Sbjct: 197 VEGIKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 >gi|56718415|gb|AAW27922.1| SplR [Serratia plymuthica] Length = 249 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 71/235 (30%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L + + + + +A + + + + +Y + D+ D Sbjct: 13 ETLRDHIDRKLSSLGSPEYAYTVVRK-----KNPSDVLIISSYPDEWVDLYCANNFQLTD 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI- 133 + P W + L G F + + + Sbjct: 68 PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLSKQYNIINGFTFVLHDHMNNLALLSV 126 Query: 134 -FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERET 179 S + + GA ++ D E + + AA + T RE Sbjct: 127 IIASNGQEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA G+SV TV ++G+ VKL N QAI + I Sbjct: 187 EVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241 >gi|224552945|gb|ACN54716.1| PagR [Pantoea agglomerans] Length = 210 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFYWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E + Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|306837362|ref|ZP_07470241.1| regulatory protein LuxR [Brucella sp. NF 2653] gi|306407554|gb|EFM63754.1| regulatory protein LuxR [Brucella sp. NF 2653] Length = 235 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 74/226 (32%), Gaps = 11/226 (4%) Query: 19 PRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L I++ I R Y + L + D Sbjct: 2 ALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAIDPVF 61 Query: 78 F----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 ++ + I ++ + + +L E L IA R G + Sbjct: 62 QEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTV 121 Query: 134 FTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 FT E + + K +S A LT RE CL+ A +G Sbjct: 122 FTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRWAANG 180 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 181 KTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 226 >gi|107101332|ref|ZP_01365250.1| hypothetical protein PaerPA_01002366 [Pseudomonas aeruginosa PACS2] gi|296389701|ref|ZP_06879176.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAb1] Length = 160 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 11/164 (6%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + H P+IW + + G + PVR + + Sbjct: 1 MRHGLLEYTPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVR 55 Query: 137 EFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYT 190 +A I+E + F +L R LT RET L+ G T Sbjct: 56 SSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKT 115 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI L + TV ++ +A KL++ N+ +A KA G + Sbjct: 116 YGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 159 >gi|224552927|gb|ACN54704.1| PagR [Pantoea agglomerans] Length = 210 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E + Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + L L+ + + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|30315261|gb|AAP30848.1|AF503776_1 HalR [Hafnia alvei] Length = 246 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L + ++ + +A +N + + + +Y + ++ + D Sbjct: 13 ETLRDYIDRKLSQFGSPEYAYTVVNK-----KNPSKLLIISSYPDEWVNLYIANNLQHID 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + P +W + L G F + + + Sbjct: 68 PVILTAFKRTSPFVWDENITLM-SDLKISKIFSLSKKYNIANGYTFVLHDHLNNLALLSL 126 Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARN---------LTERET 179 + E ++ L + S T RE Sbjct: 127 IIDSNMKANLEEQFSSEKGNLQMLLIEINEQMYRLVQSVSEDKDGSEMGVSKATFTAREH 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA +G+SV TV ++G+ KL N QAI + I Sbjct: 187 EVLYWASMGNTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELELI 241 >gi|320323453|gb|EFW79538.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 240 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 9/228 (3%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + Y + L N D G Sbjct: 21 TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ + + + + V I++ Sbjct: 75 QREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCE---LLPAISYGYMNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V + + E ++ + + +R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR Q + +A+ G I Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQTVGEALCRGLI 239 >gi|224552915|gb|ACN54696.1| PagR [Pantoea agglomerans] Length = 210 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + + DI + D + + W++ + + ++ F Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86 Query: 116 AGIAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 G FP+ + + + + I + L L+ + + Sbjct: 87 QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIFS---FLINLHQKTLNLYSQHNQK 143 Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|306431674|emb|CBM41479.1| N-acyl homoserine lactone sensor/regulator [Erwinia toletana] Length = 245 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 19/203 (9%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV- 106 + + NY + D + D + + + P W + V+ S + S Sbjct: 41 PSEVVIISNYPKEWVDTYLENNYQHIDPVILTAINKISPFSW---DDNQVVNSRLKFSRI 97 Query: 107 -RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA-------------NEVIIEAHGA 152 L G F + + + + ++IEAH Sbjct: 98 FNLSKQYNIVNGYTFVLHDNNSNLATLSLMLDEQDSSSIEEVIKSNKNKIQMLLIEAHEK 157 Query: 153 CYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + +E K ++ + ++RE L A G T EIA LG+ + TV ++G+ Sbjct: 158 ITSLYKNIIESEKNKAINKKDIFSQRENEILYWASIGKTYPEIAVILGIKISTVKFHIGN 217 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +N AI + I Sbjct: 218 VVKKLGVLNAKHAIRLGVELQLI 240 >gi|237846558|gb|ACR22887.1| SplR [Serratia plymuthica] Length = 249 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 71/235 (30%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L + + + + +A + + + + +Y + D+ D Sbjct: 13 ETLRDHIDRKLSSLGSPEYAYTVVRK-----KNPSDVLIISSYPDEWVDLYRANNFQLTD 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI- 133 + P W + L G F + + + Sbjct: 68 PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLSKQYNTINGFTFVLHDHMNNLALLSV 126 Query: 134 -FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERET 179 S + + GA ++ D E + + AA + T RE Sbjct: 127 IIASNGQEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G T EIA G+SV TV ++G+ VKL N QAI + I Sbjct: 187 EVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241 >gi|291614729|ref|YP_003524886.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus ES-1] gi|291584841|gb|ADE12499.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus ES-1] Length = 690 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 66/235 (28%), Gaps = 16/235 (6%) Query: 13 SLQELSPRLH---------LIQNRIKARNFALYTINSALDFPR-RQQLICELHNYDLDSG 62 S + L Q + F + + L + Y Sbjct: 2 SHDDFKSLLEVRNEAELRQRAQEVVVGFGFDYFLYATGLKMENSTTSFTKVITTYPAAWI 61 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + D + H P IW + E+ + L +G++ P+ Sbjct: 62 EKYVSAGYASIDPAVRHSMERRTPYIWSAEAFES---AGAGLMFEDARHHGIVSGMSVPL 118 Query: 123 RLGFHKN--GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERET 179 + G + E I + + L+ +E Sbjct: 119 FDSASNSIGGMGLACRSETCRGLEDIGRVVLFALYFQEAYSRIAVPFLHDEDGVLSRQEG 178 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +CL DG +IA++L L V L KLDA + QA+A A G + Sbjct: 179 ACLGWISDGLDVAQIAQRLALPEAEVQQLLEQVLHKLDASSLPQAVAHAFAGGLL 233 >gi|218672192|ref|ZP_03521861.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 233 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 74/217 (34%), Gaps = 3/217 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + L + + L S D + + + + Sbjct: 17 AGTRGLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKP--LLIESSLPAAYVRDFDRANM 74 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 G F +P+ W + + ++ L AG+A P + Sbjct: 75 MRGCPFGLRLRESAVPLAWH-LNDAVNGQAFPAELRALMLHHAIPAGVAMPTIAVDGRRL 133 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 F E L + E + + + + S L+ RE ++ G T Sbjct: 134 VFWFCGERAALGQSEVNELAIIILHALDAYNTVRRNEESVHNALSARELEVVRWTAQGKT 193 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S EI + L LS HTVNAY+ +A KLD VNR Q +AK Sbjct: 194 SIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAK 230 >gi|224552918|gb|ACN54698.1| PagR [Pantoea agglomerans] gi|224552921|gb|ACN54700.1| PagR [Pantoea agglomerans] gi|224552924|gb|ACN54702.1| PagR [Pantoea agglomerans] Length = 210 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + + DI + D + + W++ + + ++ F Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86 Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173 G FP+ + + S + + E + + L L+ + + Sbjct: 87 QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLINLHQKTLNLYSQHNQKKNV 146 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206 Query: 233 YI 234 + Sbjct: 207 LL 208 >gi|224552936|gb|ACN54710.1| PagR [Pantoea agglomerans] Length = 210 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + + DI + D + + W++ + + ++ F Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFYWENNVILSGGYNLTRIFNESFQ-YNIF 86 Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173 G FP+ + + S + + E + ++ L L+ + Sbjct: 87 QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLTKLHQKTLNLYSQHHQKKNV 146 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206 Query: 233 YI 234 + Sbjct: 207 LL 208 >gi|307296697|ref|ZP_07576516.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306877826|gb|EFN09051.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 225 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 9/220 (4%) Query: 19 PRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + I + R++A ++ ++ + +Y D + D Sbjct: 3 DLMAEITKAMGFRHYALVHHVDLKPAV-----RSVHIVDYPQDWVERFQARRLYASDPIH 57 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-S 136 + + W ++Q + ++ + + G P + NG F + Sbjct: 58 RASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPGELNGSCSFAMA 117 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194 ML + + ++ + + + +LTER+ C+ L G T EI Sbjct: 118 AGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECVALVARGKTDWEI 177 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ LG+ TV ++ A + R +A+ G I Sbjct: 178 SQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 217 >gi|220933015|ref|YP_002509923.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] gi|219994325|gb|ACL70928.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] Length = 211 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L G ++++IA++L +S TV ++ + KL +R QA+ A++ G Sbjct: 147 ELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVSNILRKLSVNDRTQAVIVALKRG 206 Query: 233 YI 234 + Sbjct: 207 LV 208 >gi|224552975|gb|ACN54736.1| PagR [Pantoea agglomerans] Length = 210 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 +Y Q I N + + DI + D + + W++ Sbjct: 9 VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151 + + ++ F G FP+ + + S + + E + Sbjct: 66 ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLVKLHQKTLNLYSQHHQKKNVFLSPRECQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|153011539|ref|YP_001372753.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] gi|151563427|gb|ABS16924.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] Length = 260 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 78/230 (33%), Gaps = 10/230 (4%) Query: 15 QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L I++ I R+ Y + + + Sbjct: 22 SDTLALLTRIRDEIGCRHIMHTYRGRMGDCTKTTSSDLTVVMTVPTSWTARYSTKNYFVI 81 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D +F + I+ ++ S +L E L +A R Sbjct: 82 DPIFQEDAPYFQNDASGIVRDLQEDANECPSIAELLQDAEKHGLGNIFVAVSARSQKGAV 141 Query: 130 GYVIFTSEFLMLANEVIIEAHGA-----CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +F E + A +I L K ++ A LT RE CL+ Sbjct: 142 GCTLFMFEMSPDEDREQFVAKLRPRLLSLSGIIHSALCGCKDVATVASLLTPREVDCLRW 201 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 202 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 251 >gi|300311730|ref|YP_003775822.1| LuxR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074515|gb|ADJ63914.1| LuxR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 59/223 (26%), Gaps = 19/223 (8%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 + + A FA YT + + N D + Y D F Sbjct: 37 RLLKLLDADYFASYTWDD----DNHRFGNTVSVNMDPANLANY-ERYYQYCDPITFELQR 91 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 +P + + + + G+ G G + Sbjct: 92 LSVPTLVTQVMPMEQL-RRTEFFNDFLARDGLCFGVNMFAYDGDRNIGDIRIWRSARREN 150 Query: 143 NE-------------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + A L+ERE+ Q G Sbjct: 151 FDRDALKLLALIRPAFTLALQRARAHCSAAAASPDAGALLTPTPLSERESHLAQCICRGL 210 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + +EIA +L + TV ++ KL+ NR Q + + I G Sbjct: 211 SDKEIARELHIEFSTVRTHITRIFKKLNVGNRTQLVKRLIDGG 253 >gi|83593270|ref|YP_427022.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576184|gb|ABC22735.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 254 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 12/221 (5%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 + + + S + + ++D D + D + Sbjct: 6 EAAGVPHVSYGALFSPHYRSDPGRETVYMSHFDQAFLDRYSQAGHLSHDTAVQWVFRFSQ 65 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 P+ W + + + G++ PVR G + +F S + ++ Sbjct: 66 PVPWVTPRRLAELSERQIRVWEEGEAFGVRNGLSVPVRFGRDGSAGGLFFSATGLGDDDW 125 Query: 146 ----------IIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEE 193 ++ ++ + F + + +LT RE L + G E Sbjct: 126 RGILTDKGATLVALAYTFHEAMERFPLFSTRVNPQDHVIHLTNRERESLIWSARGCQVGE 185 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A++LG++ T +LG+A KL A QA+A+A+ G + Sbjct: 186 VADRLGVADRTAEHHLGAARRKLMARTTAQAVARALAMGLL 226 >gi|332981237|ref|YP_004462678.1| LuxR family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698915|gb|AEE95856.1| two component transcriptional regulator, LuxR family [Mahella australiensis 50-1 BON] Length = 217 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE L L G ++ EIA+KL +S TV +L S KL+ +R QA AI+ Sbjct: 155 DDLTQREREVLALVAKGLSNGEIAKKLFISEKTVKNHLSSIFRKLNVSDRTQAAVYAIKH 214 Query: 232 GY 233 GY Sbjct: 215 GY 216 >gi|333004174|gb|EGK23706.1| regulatory protein sdiA [Shigella flexneri K-272] gi|333017786|gb|EGK37093.1| regulatory protein sdiA [Shigella flexneri K-227] Length = 208 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 13/202 (6%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAAHAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLS 201 L+ +G TS EIA L ++ Sbjct: 186 EILKWTAEGKTSAEIAMILSIT 207 >gi|221369733|ref|YP_002520829.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] gi|221162785|gb|ACM03756.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] Length = 212 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 10/209 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + + F +++ L + + + D L + +G Sbjct: 1 MNDAVVGLGFQTFSLAYQRPHALEAVTAPYLTTWPCEKDGACDPASARIRDPLLDYAVTG 60 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 + P+IW+S +++ + ++ G AG+ P+ + G + S Sbjct: 61 VKPLIWRSGSWKSL---NRKVRFPCLRGSEARAGLIVPLPDQRGRIGAITMLSAQREDYP 117 Query: 144 EVIIEAHGA-CYQVITDFLELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAE 196 E I EA V+ L + + L + R+ L G ++ EIA Sbjct: 118 EDIAEAGRIVALAVLVRAGSLAPAVGAVSPALASLAQLSPRQIEILDWIAHGKSNSEIAL 177 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LGLS V ++ KLD +R QA+ Sbjct: 178 ILGLSRRNVTYHVSEILKKLDVTSRTQAV 206 >gi|239834457|ref|ZP_04682785.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] gi|239822520|gb|EEQ94089.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] Length = 260 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 12/231 (5%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIETYG 73 + L I++ I R+ D + + + + + Sbjct: 22 SDTLALLTRIRDEIGCRHILHTYRGRMGDCSKTSSSDLTVVMTVPANWAARYSTKNYFVV 81 Query: 74 DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D +F + I+ ++ + + E L IA R Sbjct: 82 DPIFQEDAPYFKDDVSGIVRNLQEDADQCPAVADMLQDAEKHGLGNIFIAVSARGQKGAV 141 Query: 130 GYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G +F+ + ++ + + K ++ + LT RE CL+ Sbjct: 142 GCSLFSFEISPDEDREQFVAKLRPRLLSLSGIIHSALC-GCKDVATVSSLLTPREVDCLR 200 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G I Sbjct: 201 WAANGKTDGEIAEILNIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 251 >gi|89068253|ref|ZP_01155663.1| transcriptional regulator, LuxR family protein [Oceanicola granulosus HTCC2516] gi|89046170|gb|EAR52228.1| transcriptional regulator, LuxR family protein [Oceanicola granulosus HTCC2516] Length = 202 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 20/203 (9%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 + + FP + ++ + D D + + I W I Sbjct: 18 SYLALRVGFAFPLEE-----VNRLPPEWVDHYTAKGLMLADPAMRWIYANTGAIRWSEIA 72 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHG 151 + ++ + G+A + + + +F + + Sbjct: 73 LDDPLQ-----VLAQARSFGLRYGLAVSLHDDTPLGQRSFGLFARADREFDDSEVALLTL 127 Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++R + NLT E L++ DG ++IA +LG+S V L + Sbjct: 128 Y-------LTRRHEERMPPS-NLTAAELEALRMVKDGQRVKQIAHELGVSEGAVKQRLKN 179 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 A KL+A QA A FG I Sbjct: 180 AKRKLNAATSAQAATMATEFGLI 202 >gi|254293153|ref|YP_003059176.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041684|gb|ACT58479.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC 49814] Length = 248 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 3/181 (1%) Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 + D G W + + +G + Sbjct: 61 WPKVWARHYADQRYFEVDPVFESLLKGFDAGYWDELVSNLPVSQAGLKVMEDAAAHGYAD 120 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA---ARN 173 G + + V + L+ V I A + + + + L +R + Sbjct: 121 GYSRLIPTLNGSYYLVSLYGKTLVRDPNVRILFDLASIKFVHEGVMLLNRRVGTPLKDHD 180 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+R+ LQ +G T ++ A++LG+SV V +L +++A QAI A G Sbjct: 181 LTKRQIEVLQAKANGQTDKQTADRLGVSVKAVEGHLTKIRKQMNARTTSQAIGLARGKGL 240 Query: 234 I 234 I Sbjct: 241 I 241 >gi|163734137|ref|ZP_02141578.1| Transcriptional activator protein RaiR, putative [Roseobacter litoralis Och 149] gi|161392673|gb|EDQ17001.1| Transcriptional activator protein RaiR, putative [Roseobacter litoralis Och 149] Length = 154 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 8/154 (5%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV- 145 + W+ + + + + G L G + P+R + + E Sbjct: 1 MDWKRLDWSSKAARAFRAEAATFG--LGNQGYSIPIRGPNGQFALFTVNTSCDDEEWEEF 58 Query: 146 ----IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 E + LE ++ +++L+ RE + L GY+ ++AE L + Sbjct: 59 TESNRRELILIAHYFNQKALEFEPNKTPEQSQSLSPREVDAMTLLAIGYSRAQVAETLSI 118 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HT+ Y+ SA KL A N A+A+A+ G I Sbjct: 119 SEHTLRVYIESARFKLGAANTTHAVARALSRGLI 152 >gi|116255188|ref|YP_771022.1| putative LuxR-type transcriptional regulator protein TraR [Rhizobium leguminosarum bv. viciae 3841] gi|115259836|emb|CAK02931.1| putative LuxR-type transcriptional regulator protein TraR [Rhizobium leguminosarum bv. viciae 3841] Length = 234 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 12/222 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L + R + + + + N D L + Sbjct: 21 LKAALADLAERFEFSGYDYAKLLPG--------DFYVISNLHPDWLKRSRKLDLDRRNPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + IW + Q +GI P+ + + F S Sbjct: 73 MKRAQQTRRAFIWSGTPQTGTPLEEDQTFYETAAQFGIRSGITIPIAISSGAISVLSFVS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 +L + I+ A V + + + + + L+ +E + + G T E Sbjct: 133 PKSILTAQDEIDPIAASSAVGQLHARIGQLKVTPSIQESFYLSPKEGTYTRWLSLGKTVE 192 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + A+ + +TV L A + D N Q +A AIR G I Sbjct: 193 DTADIEQVKYNTVRIALAEARRRYDLCNNTQLVALAIRRGLI 234 >gi|125973782|ref|YP_001037692.1| two component LuxR family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004513|ref|ZP_05429492.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 2360] gi|281417939|ref|ZP_06248959.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum JW20] gi|125714007|gb|ABN52499.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum ATCC 27405] gi|255991518|gb|EEU01621.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 2360] gi|281409341|gb|EFB39599.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum JW20] gi|316940025|gb|ADU74059.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 1313] Length = 216 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +K +LT RE L+L G ++EIA++L +S TV ++ + KL+ +R Sbjct: 144 VNEKAKKTENDLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKLNVSDRT 203 Query: 223 QAIAKAIRFGY 233 QA A + Sbjct: 204 QAAIYAYKHNI 214 >gi|50120496|ref|YP_049663.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49611022|emb|CAG74467.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 245 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 62/200 (31%), Gaps = 19/200 (9%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108 + + NY + D + D + + + P W ++ VI S + S L Sbjct: 44 VVIISNYPQEWVDTYKENNYQHIDPVILTAINTVSPFSW---EDNIVINSKLKFSKIFNL 100 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIE-----AHGACYQVITDFLE 162 G F + + + E E I+E Sbjct: 101 SKEYDIVNGYTFVLHDNNNHLAALSIMFEEHAPTDMESIVEENKDKLQMLLIATHEKITT 160 Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L K+ ++RE L A G T EIA L + + TV ++G+ Sbjct: 161 LYKEMTQSPQSKKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVK 220 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +N AI + I Sbjct: 221 KLGVLNAKHAIRLGVELQLI 240 >gi|261418763|ref|YP_003252445.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297531272|ref|YP_003672547.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319765579|ref|YP_004131080.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375220|gb|ACX77963.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297254524|gb|ADI27970.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317110445|gb|ADU92937.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 210 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 Y++ TS+ +A+ + HG +V+ ++ + ++ LT RE Sbjct: 96 AGATSYLLKTSKASEIADAIRATFHGQSVFEPEVAGKVMRNYRKQEERL--PHEQLTSRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++E+A++L +S+ TV ++ + KL +R QA+ A R G + Sbjct: 154 MEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209 >gi|238783332|ref|ZP_04627356.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970] gi|238715755|gb|EEQ07743.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970] Length = 238 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 11/210 (5%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F+ ++ +P + I NY+ + D +F+ +P + + Sbjct: 33 GFSFFSFVIREIYPITESRIYTFDNYNDSWRTLYEKNKLWKIDPVIFY---KPMPQL-EY 88 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 +++ + +GI F + L + + ++ + + I A Sbjct: 89 AVWDSLFFKGHEEIWAYGVEYGYQSGITFGMPLPQGYHSILSLSNMSHSITPKEISLAQS 148 Query: 152 ACYQV-----ITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++ + L + N LT+RE L + DG TS EIA K+ +S T Sbjct: 149 YFSKICVKIINSIILNAESPITFNKNNITLTKRELMILMFSVDGMTSHEIAGKIFISKST 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V+ ++ + KL+ N+ QAI+KA+ G I Sbjct: 209 VDFHMLNIIKKLNCKNKFQAISKALIMGLI 238 >gi|289165996|ref|YP_003456134.1| Transcriptional regulator, LuxR family with an autoinducer-binding domain [Legionella longbeachae NSW150] gi|288859169|emb|CBJ13099.1| Transcriptional regulator, LuxR family with an autoinducer-binding domain [Legionella longbeachae NSW150] Length = 248 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 9/226 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + S+ EL+ L I ++FA +T + + + Sbjct: 11 EVKSIHELNTLLKNYFWSISIKSFA-FTYYNQHTKTGSKLVYEWATTPLDAWHKYYLQEG 69 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG-QLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L LLPI W ++ + ++ + + G+ P+ + Sbjct: 70 YADIDRTLEATEQSLLPIFWDVKEQLRLAKNKRMRRFKQESLIFGLDKGLCIPLHGPKGE 129 Query: 129 NGYVIF---TSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 ++ +E + E ++ L L +K+ LT+RE CL+ Sbjct: 130 FVILVLHQRINEHGLKNWENHVDTWLGILHTYFHFLRLLLNEKKIGVV-PLTKREQECLR 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L +G+ E IA+ L +S TVN +L +A KL N+ A+ Sbjct: 189 LTAEGFRLELIAQLLKISKRTVNFHLQNANKKLGVTNKY-LAIMAL 233 >gi|270159175|ref|ZP_06187831.1| LuxR family transcriptional regulator [Legionella longbeachae D-4968] gi|269987514|gb|EEZ93769.1| LuxR family transcriptional regulator [Legionella longbeachae D-4968] Length = 247 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 9/226 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + S+ EL+ L I ++FA +T + + + Sbjct: 10 EVKSIHELNTLLKNYFWSISIKSFA-FTYYNQHTKTGSKLVYEWATTPLDAWHKYYLQEG 68 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG-QLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L LLPI W ++ + ++ + + G+ P+ + Sbjct: 69 YADIDRTLEATEQSLLPIFWDVKEQLRLAKNKRMRRFKQESLIFGLDKGLCIPLHGPKGE 128 Query: 129 NGYVIF---TSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 ++ +E + E ++ L L +K+ LT+RE CL+ Sbjct: 129 FVILVLHQRINEHGLKNWENHVDTWLGILHTYFHFLRLLLNEKKIGVV-PLTKREQECLR 187 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L +G+ E IA+ L +S TVN +L +A KL N+ A+ Sbjct: 188 LTAEGFRLELIAQLLKISKRTVNFHLQNANKKLGVTNKY-LAIMAL 232 >gi|326317305|ref|YP_004234977.1| LuxR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374141|gb|ADX46410.1| transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 264 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 17/227 (7%) Query: 24 IQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 I + ++ + + E N + D Sbjct: 29 AAREIGFDAAIYDFSPVSMTPEGVLMTPSVLEYRNMPGPMRKLWVEQGMYQVDPVQALAL 88 Query: 82 SGLLPIIWQSIQEETVI-----ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--- 133 G W Q+E + + + + G+ P+ + ++ + Sbjct: 89 RGSGAFFWSYHQDEESVLQPMLDGGARSVSSVLTEWRMTRGVTVPLHMPGNRFATLTAMW 148 Query: 134 ----FTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGD 187 F + + L + ++ + + L++F K + L++RE C+ LA + Sbjct: 149 QDDNFAQKKMSLV-DSVMRLAYMAHILNDHLLKVFTKIQLTPRDVALSDREHECVLLAAE 207 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G S++IA +L + T+ +L SA KL NR Q IA+A FGY+ Sbjct: 208 GMPSKQIAARLNRAESTIVFHLQSAARKLGGRNRAQMIARAAHFGYL 254 >gi|330981978|gb|EGH80081.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 9/218 (4%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ + + + L N D GD Sbjct: 21 TITELDGQAAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDDAWGDAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + + L + WQ + + + L I++ Sbjct: 75 QHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVTA---FYDALVDTCELLPAISYGYTNHC 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V +A + E ++ + + +R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVARPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 DG T+ EI+ +S TV +L + KL NR QA Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQA 229 >gi|330961312|gb|EGH61572.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 240 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 11/229 (4%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + + L ++ Y L L N D G Sbjct: 21 TITELDGQTAVENALEWLRRECDCERAMFYQFKGPL------LLTFITSNVDDIWGKAYR 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL-LPFAGIAFPVRLG 125 D + ++ + L + WQ + + +V L G R Sbjct: 75 HHELITQDPVIRYYRNHLGFMNWQDAFRLYPLSACYDEAVEASELLPAISYGYTSHCRGT 134 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + E ++ + + +R LT RE LQ A Sbjct: 135 ESVTSVCTLAEVEKPINAEQ----KYLVSSLMPVMHSVARGLKFCSRGLTHRELETLQWA 190 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG + EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 191 RDGKNAWEISVIRDISEATVKYHLKAIYAKLGVANRAQAVGEALCRGLI 239 >gi|229541561|ref|ZP_04430621.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229325981|gb|EEN91656.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 227 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE LQL DG ++ I + L +S TV ++ + KL +R QA+ A Sbjct: 159 PPLHLLTPRECEVLQLLADGKSNRAIGDALYISEKTVKNHVSNILQKLKVKDRTQAVVTA 218 Query: 229 IRFGYI 234 I+ G++ Sbjct: 219 IKNGWV 224 >gi|148557255|ref|YP_001264837.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148502445|gb|ABQ70699.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 301 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 9/240 (3%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLD 60 S + + S S+ E LH + ++ A ++ + Sbjct: 61 SSLVVGLEASRSMDEAMDVLHGAILELGFPRVVYGCVSIAHLPSGTWVPAPLQVRGFPDR 120 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIA 119 D + + W +Q +++ + + L G+ Sbjct: 121 WDRDWPRHRAH--DPYAHTAFLKMESTNWTVVQNNADLLDPAQVDCISYINDLGLNPGLT 178 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL 174 P+ + H G++ + + + + + F +++L Sbjct: 179 VPLFIPGHHYGFITAVGDGGLDGWDAAADRAGPTLAMIANYFDNFAIRRFGGPPKESQSL 238 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE CL + G T E+IA L LS TV YL KLDAVNR A+AKA+ G I Sbjct: 239 SKRELECLTWSARGKTVEDIAVILDLSADTVRVYLKRVNQKLDAVNRSHAVAKAMCLGMI 298 >gi|332757226|gb|EGJ87563.1| regulatory protein sdiA [Shigella flexneri 2747-71] gi|333003265|gb|EGK22811.1| regulatory protein sdiA [Shigella flexneri K-218] gi|333017641|gb|EGK36953.1| regulatory protein sdiA [Shigella flexneri K-304] Length = 196 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 13/202 (6%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E + L +++ + Y++ P + + NY Sbjct: 2 LLRFQRMEAAEEAYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 58 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 59 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAAHAHGLRRGVTQYLML 113 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 114 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 173 Query: 180 SCLQLAGDGYTSEEIAEKLGLS 201 L+ +G TS EIA L ++ Sbjct: 174 EILKWTAEGKTSAEIAMILSIT 195 >gi|253687834|ref|YP_003017024.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754412|gb|ACT12488.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 245 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 63/200 (31%), Gaps = 19/200 (9%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108 + + NY + + + D + + + P W ++ VI S + S L Sbjct: 44 VVIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNL 100 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIE-----AHGACYQVITDFLE 162 G F + + + E E I+E V Sbjct: 101 SKEYDIVNGYTFVLHDNNNNLAALSIMFEEHSPTDIESIVEENKDKLQMLLITVHEKITT 160 Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L ++ ++RE L A G T EIA L + + TV ++G+ Sbjct: 161 LYKEMTQSTQSRKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVK 220 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +N AI + I Sbjct: 221 KLGVLNAKHAIRLGVELQLI 240 >gi|32441931|gb|AAO38761.1| SwrR [Serratia liquefaciens] Length = 248 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 15/189 (7%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + + + D L + + P W E + G Sbjct: 52 EWFEFYIKNNYQFIDPVLITASHRITPFTWDK-DLEIGAGLKLPKIFDMAKNYNIINGYT 110 Query: 120 FPVRLGFHKNGYVIFTSE-FLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAA-- 171 F + H + + E I+ + L+++ S+ A Sbjct: 111 FVLHDHHHNLVVLSIMLDKHCDADVEQQIDNNKAEIQMLLITMHGKMTTLYQEMSTPADF 170 Query: 172 ------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++RE + A G + +EIA LG+ + TV ++G+A KL N AI Sbjct: 171 EKMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAI 230 Query: 226 AKAIRFGYI 234 + I Sbjct: 231 RLGVELQLI 239 >gi|260466634|ref|ZP_05812822.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029640|gb|EEW30928.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 236 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 8/236 (3%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + ++ G + +S +L+ + I A ++ L + D + N+ D Sbjct: 7 LLQSDTLGSRLTSRGDLTSFFMELTAEIGADSYMLVAMVHDQDRNDAR---IVSSNWIFD 63 Query: 61 SGDIP--NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 + ++ ++ + P++ + + S + RL L Sbjct: 64 AIELIGKRLIAGLAQGTLTVAPGTRPRPLVAAQAPDADGLVSGEE--ARLLDVLGHAEIY 121 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + + +G + + + + +++A C ++ +L ++ L++RE Sbjct: 122 SLRLNVGRQRLFALFSAASAGKIDQPALMKAQLKCCYALSHIPQLI-AAAAMQDPLSDRE 180 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL +G T++E+A LG+S +TVN+Y+ A K A NR AIA AIR G I Sbjct: 181 RECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGII 236 >gi|304405086|ref|ZP_07386746.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345965|gb|EFM11799.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 227 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 41/82 (50%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ F + + + A LTERE L+L G +++EIA+ L + + TV ++ + Sbjct: 143 VAAKMMNRFRQPQQTTAKAHEQLTEREMDVLKLVAQGKSNQEIADDLFIGIKTVKFHVTN 202 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL +R QA A + G Sbjct: 203 IFSKLGVDDRTQAAIYAHKQGL 224 >gi|13472561|ref|NP_104128.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023307|dbj|BAB49914.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 265 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 95/236 (40%), Gaps = 8/236 (3%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + ++ G + +S +L+ + I A ++ L I D + N+ D Sbjct: 36 LLQSDTLGSRLTSRGDLTSFFMELTAEIGADSYMLVAIVHDQDRNDAR---IVSSNWIFD 92 Query: 61 SGDIP--NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 + ++ ++ P++ + + S + RL L Sbjct: 93 AIELIGKRLIASLAQGALTVAPGIRPRPLVAARAPDADGLVSGEE--ARLLDVLGHAEIY 150 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + + +G + + + + +++A C ++ +L ++ L++RE Sbjct: 151 SLRLNVGRQRLFALFSAATSGQIDQPALMKAQLKCCYALSHIPQLI-AAAAMQDPLSDRE 209 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL +G T++E+A LG+S +TVN+Y+ A K A NR AIA AIR G I Sbjct: 210 RECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGII 265 >gi|30063360|ref|NP_837531.1| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri 2a str. 2457T] gi|56480001|ref|NP_707803.2| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri 2a str. 301] gi|110805889|ref|YP_689409.1| ftsQAZ gene transcriptional regulator cluster [Shigella flexneri 5 str. 8401] gi|30041612|gb|AAP17340.1| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri 2a str. 2457T] gi|56383552|gb|AAN43510.2| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri 2a str. 301] gi|110615437|gb|ABF04104.1| Regulatory protein sdiA [Shigella flexneri 5 str. 8401] gi|281601358|gb|ADA74342.1| Regulatory protein SdiA [Shigella flexneri 2002017] gi|313650133|gb|EFS14546.1| regulatory protein sdiA [Shigella flexneri 2a str. 2457T] gi|332757474|gb|EGJ87809.1| regulatory protein sdiA [Shigella flexneri K-671] gi|332766648|gb|EGJ96852.1| autoinducer binding domain protein [Shigella flexneri 2930-71] Length = 208 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 13/202 (6%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMEAAEEAYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAAHAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLS 201 L+ +G TS EIA L ++ Sbjct: 186 EILKWTAEGKTSAEIAMILSIT 207 >gi|21654819|gb|AAK76734.1| quorum sensing regulator SprR [Serratia proteamaculans] Length = 249 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 54/202 (26%), Gaps = 16/202 (7%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + + +Y + D+ + D + P W + Sbjct: 41 PSDVLIISSYPDEWVDLYRVNNFQLTDPVILTAFKRTSPFTWDENITLMSDLKFTK-IFS 99 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFL 161 L G F + + + + + Sbjct: 100 LSKRYNIVNGFTFVLHDHMNNLALLSVIIDNNKQGALEERLSSERGTMQMLLIDINEQMY 159 Query: 162 ELFKKRSSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L SS+ + T RE L A G T EIA +S+ TV ++G+ Sbjct: 160 RLAGSVSSSRQRHHADEDKPIFTPRENEVLYWASMGKTYGEIATIASISLSTVKFHMGNI 219 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 VKL N QAI + I Sbjct: 220 VVKLGVSNARQAIRLGVELELI 241 >gi|126735985|ref|ZP_01751729.1| transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] gi|126714542|gb|EBA11409.1| transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] Length = 202 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 16/200 (8%) Query: 35 LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE 94 + FP + ++ + D + + I W + Sbjct: 19 YIALRIGFAFPMEE-----VNAFPQGWIAHYTKQRFMLFDPVVKWAYGNVGTIRWFKL-- 71 Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 E + + G+ V + + Sbjct: 72 ---AEDDPKRIIAQAQTFGMRFGVTVSVFDSSADAQRSFASFTRSDRDYTDLE------V 122 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ +L ++ NLT+ E L + DG +EIA +L +S V L +A + Sbjct: 123 KLLLAYLTRRHNETAPPTNLTKAELEALGMVKDGKRLKEIAFELSVSEGAVKQRLKNAKL 182 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A QA A A ++G I Sbjct: 183 KLGAKTGTQAAALANQYGLI 202 >gi|56418969|ref|YP_146287.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56378811|dbj|BAD74719.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 210 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 Y++ TS+ +A+ + HG +V+ ++ + ++ LT RE Sbjct: 96 AGATSYLLKTSKASEIADAIRATFHGQSVFEPEVAGKVMRNYRKQEERL--PHEQLTSRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++E+A++L +S+ TV ++ + KL +R QA+ A R G + Sbjct: 154 MEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209 >gi|144228246|gb|ABO93630.1| PagR [Pantoea agglomerans pv. gypsophilae] gi|163676290|gb|ABY40374.1| PabR [Pantoea agglomerans pv. betae] Length = 230 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 11/218 (5%) Query: 24 IQNRIKARNFAL----YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 IQN + A Y Q I N + + DI + D + Sbjct: 15 IQNELNAFFEDYKGIIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQ 71 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EF 138 + W++ + + ++ F G FP+ + + S + Sbjct: 72 SLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKD 130 Query: 139 LMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAE 196 + E + ++ L L+ + L+ RE L+ G G T E+A Sbjct: 131 SGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAV 190 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L ++ TV +G+ KL N A+ + Sbjct: 191 ILSIAERTVKFLMGNVMKKLGVNNATHAVKLGTELRLL 228 >gi|89055684|ref|YP_511135.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88865233|gb|ABD56110.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 243 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 62/224 (27%), Gaps = 8/224 (3%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + + T+ A P + N D D FL Sbjct: 19 RAVWAGMAHLADDLGMPFCTLTMARRAPDLRSSQFI-TNLPAPFQDTYCEGGFINDDPFL 77 Query: 78 FHFNSGLLPI-IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF----HKNGYV 132 + + + + L + PVR Sbjct: 78 SLICRDMTAAGFMTDPDDLPEADQRQGAFLDLTRSFGVGTALCIPVRTTRQSEFGGWVIG 137 Query: 133 IFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + I A L ++ + A R L+ RE CLQ G Sbjct: 138 GDLRARDVADGREIAAMQLQLAGLIAFERLSVLTRQANHAHRRLSPRERECLQWLSAGLR 197 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA +L +S V+ Y+ +A K A R QA+A AI G I Sbjct: 198 VTQIAHRLDISESAVHLYIKNARRKFGARTREQAVAHAIVSGEI 241 >gi|261420477|ref|YP_003254159.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768147|ref|YP_004133648.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261376934|gb|ACX79677.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113013|gb|ADU95505.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 391 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 32/247 (12%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++ + +E + + F ++ + F ++ LH + +D+G I Sbjct: 157 WILRAQTFEESAAHI-----CFGFSYFLPFSRCALFQFVNQESTAIGLHGHGVDNGQIQR 211 Query: 67 ILIETYGDDFLF----------HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 + +E L H PI V +S Q + Sbjct: 212 LRVELDSIPMLKESVGKLKAEVHEFRHFRPIY--------VPRASEQFPRLYVDPFGLAS 263 Query: 117 GIAFPVRLGFH---------KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + PV + G F + L ++ A ++ K+ Sbjct: 264 LVIVPVYVPTEGRMIGGVVLDRGPGRFFAVDRRLFPALMKFGQSAGELLLKWIKAPKKEW 323 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A +L+ RE L+L DG ++ E A +L LS TV Y+ SA KL+A NR +A+AK Sbjct: 324 EGMAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAK 383 Query: 228 AIRFGYI 234 A+R G I Sbjct: 384 ALRLGLI 390 >gi|110224491|emb|CAJ86500.1| quorum-sensing transcriptional regulator [Serratia marcescens] Length = 248 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 15/189 (7%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + + + D L + + P W E + G Sbjct: 52 EWFEFYIKNNYQFIDPVLITASHRITPFTWDK-DLEIGSGLKLPKIFDMAKNYNIINGYT 110 Query: 120 FPVRLGFHKNGYVIFTSE-FLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAA-- 171 F + H + + E I+ + L+++ S+ A Sbjct: 111 FVLHDHHHNLVVLSIMLDKHCDTDVEQQIDNNKAEIQMLLITMHGKMTALYQEMSTPADF 170 Query: 172 ------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++RE + A G + +EIA LG+ + TV ++G+A KL N AI Sbjct: 171 EKMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAI 230 Query: 226 AKAIRFGYI 234 + I Sbjct: 231 RLGVELQLI 239 >gi|333003004|gb|EGK22558.1| regulatory protein sdiA [Shigella flexneri VA-6] Length = 208 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 13/202 (6%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ Y++ + + NY Sbjct: 14 LLRFQRMEAAEEVYHEIELQAQQLEYD---YYSLCVRHPVLFTRPKVAFYTNYPESWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L + + S Q G+ + L Sbjct: 71 YQAKNFLAIDPVL-----NPENFSQDHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179 G++ F T E +L++E+ ++ + + + L + + N ++RE Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLS 201 L+ +G TS EIA L ++ Sbjct: 186 EILKWTAEGKTSAEIAMILSIT 207 >gi|297528821|ref|YP_003670096.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252073|gb|ADI25519.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 391 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 32/247 (12%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++ + +E + + F ++ + F ++ LH + +D+G I Sbjct: 157 WILRAQTFEESAAHI-----CFGFSYFLPFSRCALFQFVNQESTAIGLHGHGVDNGQIQR 211 Query: 67 ILIETYGDDFLF----------HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 + +E L H PI V +S Q + Sbjct: 212 LRVELDSIPMLKESVGKLKAEVHEFRHFRPIY--------VPRASEQFPRLYVDPFGLAS 263 Query: 117 GIAFPVRLGFH---------KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + PV + G F + L ++ A ++ K+ Sbjct: 264 LVIVPVYVPTEGRMIGGVVLDRGPGRFFAVDRRLFPALMKFGQSAGELLLKWIKAPKKEW 323 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A +L+ RE L+L DG ++ E A +L LS TV Y+ SA KL+A NR +A+AK Sbjct: 324 EGMAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAK 383 Query: 228 AIRFGYI 234 A+R G I Sbjct: 384 ALRLGLI 390 >gi|84517329|ref|ZP_01004683.1| transcriptional regulator, LuxR family [Loktanella vestfoldensis SKA53] gi|84508809|gb|EAQ05272.1| transcriptional regulator, LuxR family [Loktanella vestfoldensis SKA53] Length = 202 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 16/200 (8%) Query: 35 LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE 94 + FP + + D D D + S + I W I Sbjct: 19 YIALRIGFAFPIEE-----TNALSSDWIDHYTKQRFMLYDPTVRWAYSNVGCIRWSEITL 73 Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + + G+ V + + + Sbjct: 74 DDP-----KRVLAQARSFGMRYGLTVSVFDASKDQQRSLASFTRSDREFSTLEA------ 122 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ +L ++ NLT+ E L + DG +EIA +L +S V L +A + Sbjct: 123 KLLQVYLTRRHTETAPPTNLTKAEIEALGMIKDGRRLKEIAFQLKVSEGAVKQRLKNAKL 182 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A QA A A ++G I Sbjct: 183 KLGAKTGTQAAALASQYGLI 202 >gi|227115411|ref|ZP_03829067.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 245 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 19/200 (9%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108 + + NY + + + D + + + P W ++ VI S + S L Sbjct: 44 VVIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNL 100 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIE-----AHGACYQVITDFLE 162 G F + + + E E I+E V Sbjct: 101 SKEYDIVNGYTFVLHDNNNHLAALSIMFEEHAPTDMENIVEENKDKLQMLLIAVHEKITT 160 Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L K+ ++RE L A G T EIA L + + TV ++G+ Sbjct: 161 LYKEMTQSTQSKKQGEKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVK 220 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +N AI + I Sbjct: 221 KLGVLNAKHAIRLGVELQLI 240 >gi|116495146|ref|YP_806880.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191638654|ref|YP_001987820.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227534839|ref|ZP_03964888.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632026|ref|ZP_04675057.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066710|ref|YP_003788733.1| CitB family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116105296|gb|ABJ70438.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712956|emb|CAQ66962.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227187595|gb|EEI67662.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526491|gb|EEQ65492.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439117|gb|ADK18883.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382696|gb|AEA54172.1| two component transcriptional regulator, LuxR family [Lactobacillus casei LC2W] gi|327385883|gb|AEA57357.1| two component transcriptional regulator, LuxR family [Lactobacillus casei BD-II] Length = 221 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE LQL G +++EIA +L +++ TV ++ + KLD +R QA A Sbjct: 142 PQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYA 201 Query: 229 IRFGYI 234 ++ G + Sbjct: 202 LKHGLV 207 >gi|258539885|ref|YP_003174384.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151561|emb|CAR90533.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 221 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE LQL G +++EIA +L +++ TV ++ + KLD +R QA A Sbjct: 142 PQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYA 201 Query: 229 IRFGYI 234 ++ G + Sbjct: 202 LKHGLV 207 >gi|320184745|gb|EFW59537.1| DNA-binding transcriptional activator SdiA [Shigella flexneri CDC 796-83] Length = 159 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 5/148 (3%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF----TSEFLMLANEVII 147 + + S Q G+ + L G++ F T E +L++E+ + Sbjct: 12 LMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQL 71 Query: 148 EAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + + + L + + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 72 KMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVN 131 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 132 FHQKNMQKKINAPNKTQVACYAAATGLI 159 >gi|222102144|ref|YP_002546734.1| transcriptional regulatory protein [Agrobacterium radiobacter K84] gi|221728261|gb|ACM31270.1| transcriptional regulatory protein [Agrobacterium radiobacter K84] Length = 247 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 66/238 (27%), Gaps = 18/238 (7%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFAL------YTINSALDFPRRQQLI----CEL 54 +T ++ ++ RL + N ++AR + A + +L + Sbjct: 7 DVTSEELRLFGDIVARLSRLDNDVEARTAVFEDIVKLVRADFAASYIWNDRLRRFEKGLI 66 Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 HN D ++ + D F + + + + + Sbjct: 67 HNMDPENIRNY-ERYYQFRDPHTFKLREKRKATLIEEVNPYNELIR-TEFYNDFLKRDGL 124 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI--IEAHGACYQVITDFLELFKKRSSAAR 172 GI + G G + + ++ Sbjct: 125 HHGINVFLFEGDRDLGDFRLWRSAKSPDFSEREKMLLDTISPFLKKAMANGMERF----E 180 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLT RE L G EI + L + TV +L A K NR + A +R Sbjct: 181 NLTPRERQIAFLVARGCRDREICDMLNIGFSTVRTHLNKAMEKKGCSNRAELAALIMR 238 >gi|258510526|ref|YP_003183960.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477252|gb|ACV57571.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 231 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 152 ACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++I +F + R ++ + LTERE LQ G +++EIA L +S +TV + Sbjct: 137 LAMKMIAEFSRTAETRMPSSESVTELTEREREVLQYLSAGASNKEIARALFISENTVRNH 196 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + KL NR QA A A+R G Sbjct: 197 VRHILDKLHLSNRAQAAAYAVRNGI 221 >gi|322381417|ref|ZP_08055416.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154644|gb|EFX46919.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 208 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ F K S+ +LTERE L+L G +++E+A++L + V TV ++ + Sbjct: 126 VATKIMNRF-RQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTN 184 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA A + G + Sbjct: 185 VLQKLGVEDRTQAAIYAFKHGIV 207 >gi|118592420|ref|ZP_01549812.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118435078|gb|EAV41727.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 241 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 60/213 (28%), Gaps = 12/213 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 E+ P + ++ +F + P N D D+ + + D Sbjct: 34 EVFPDILMLLRADVLASFEWDPRAGSYGNPFTI-------NQDPDNIERYRNW-YQFRDP 85 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + + + + G+ + + + Sbjct: 86 MTEKLRGLRRAAHVEEVISKPDL-RKTEFYNDFLARDGMHHGVNLFMLSSTRELADLRIW 144 Query: 136 SEFLMLANEVI-IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 I+ + L L + S LTERE L G ++I Sbjct: 145 RHRNRPDFGEREIDLLTIIGPFMRKALSLAPEVS--LDMLTERERDVALLIARGCFDKDI 202 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LG+ TV +LG+ KL NR + A Sbjct: 203 ARVLGIGFATVRTHLGNCMTKLGCANRTELAAL 235 >gi|167463122|ref|ZP_02328211.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 214 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ F K S+ +LTERE L+L G +++E+A++L + V TV ++ + Sbjct: 132 VATKIMNRF-RQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTN 190 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA A + G + Sbjct: 191 VLQKLGVEDRTQAAIYAFKHGIV 213 >gi|78060156|ref|YP_366731.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77964706|gb|ABB06087.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 237 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 69/236 (29%), Gaps = 14/236 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICE------- 53 +S + +T ++ ++ RL + + R L I L C+ Sbjct: 3 LSASDITPEELRLFGDIVARLEELGPVVDVRTVVLPAITQLLRADFAASFDCDEQTGLWR 62 Query: 54 ---LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 +N D + D + + + +E + Sbjct: 63 NGFSYNVDPLQIARYEAW-FQHVDPVTSQLRARRVATCVDDVVNRRELE-QTEFYNDFLC 120 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 GI G G + + + L ++ + A Sbjct: 121 RDGMHHGINVYAFDGATHVGDLRIWRAKGRPDFTGRDKLLLNGIEPFFRRALLRRRHACA 180 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERE+ +L GYT +++A LG+ V TV +L K NR A Sbjct: 181 --GLTERESDVARLVAAGYTDKDVARTLGIGVPTVRTHLRRVMAKKGVANRASLAA 234 >gi|320333891|ref|YP_004170602.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755180|gb|ADV66937.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 228 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H + + + + + S L+ RE L++A G T++EIA L +S TV Sbjct: 136 ALHPSVARKVLERFSTNQTPSPPEETLSPRELEVLRIAATGRTNKEIARDLDISPRTVQV 195 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L + KL +R +A+ I+ G+I Sbjct: 196 HLANIFSKLGVGSRTEAVLYGIKRGWI 222 >gi|228924157|ref|ZP_04087433.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835647|gb|EEM81012.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 214 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ L + +K + LT RE LQL G +++EIA L ++ TV A++ Sbjct: 130 IANALLSQTLPVEEKEEEPSIVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHV 189 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL+ +R QA A++ G + Sbjct: 190 SSILSKLNLSDRTQAALYAVKNGIV 214 >gi|220932804|ref|YP_002509712.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] gi|219994114|gb|ACL70717.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] Length = 209 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 140 MLANEVIIEAHGACYQ--------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 E ++EA A + V ++ ++ LT RE L G ++ Sbjct: 105 DSRPEKLVEAIKAARRGEPVLTPGVAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSN 164 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA+ L +S TV ++ + KLD +R QA+ KAI + Sbjct: 165 RDIAKTLCISETTVKTHVSNILKKLDVKDRTQAVIKAIENNLV 207 >gi|319650145|ref|ZP_08004294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317398326|gb|EFV79015.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +K +LTERE L G+G T++EI+E+L + + TV ++ + KL +R Sbjct: 136 RFREKEKKPHDDLTEREFDVLLCIGEGMTNQEISEELFIGIKTVKTHVSNILSKLGVTDR 195 Query: 222 IQAIAKAIRFGYI 234 QA A R G I Sbjct: 196 TQAAVYANRNGII 208 >gi|296162419|ref|ZP_06845211.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295887338|gb|EFG67164.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 333 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 16/227 (7%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R+ ++ RI+ F ++ ++ + + D + Sbjct: 102 QDRIEFVRQRIRQLGFDSFSYSATRTSAHHKTMFVLTSYESQSWLTRYFRERYFELDPRV 161 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131 + +P +W + + + S + + +GI + L + Sbjct: 162 ALASPTGMPFLWNTADMRADLPRAQMRSERLGGLIDMLEATGRKSGILTQMPLPEPELSA 221 Query: 132 VIFTSEF--------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181 + + + E ++ AH + T + + + +T E Sbjct: 222 SLCFNSETGNPRWMTESIVAETLMFAHMIHEFIWTHAKSVIGIAPAQQQRVTLSELQHAV 281 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ G +EIA LGLS H V+ +L + NR+Q I A Sbjct: 282 LRAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328 >gi|295704610|ref|YP_003597685.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802269|gb|ADF39335.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 212 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 40/79 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++T + +K+ + +LT+RE L+ G +++EI L ++ TV ++ + Sbjct: 133 HLLTRLTKSSEKKVNFIDHLTKREKDVLKEIAKGKSNKEIGAALHITEKTVKTHVSNILS 192 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL +R QA A++ G Sbjct: 193 KLGVQDRTQAALYAVQHGI 211 >gi|82940562|emb|CAJ44291.1| putative transcription regulator protein MotR, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 18/225 (8%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69 +S L L + + + A ++ L + ++ D +++ Sbjct: 40 TSSGRLQSGLRALTDYVGASHYLLARCDL---LQESGLDFIVSSDWPFDLVRDIANDLVR 96 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 L P + + + + + +G + Sbjct: 97 GYARSTELERCMQVFQP-NFALLPDSAEVPDGAS-----------RQYCSVTFNVGRSRL 144 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + E +L+ E + + V FL R LT+RE CL +G Sbjct: 145 ALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGTRVDRDFELTDRELECLFWIAEGK 203 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 204 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|229552512|ref|ZP_04441237.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314064|gb|EEN80037.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] Length = 233 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE LQL G +++EIA +L +++ TV ++ + KLD +R QA A Sbjct: 154 PQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYA 213 Query: 229 IRFGYI 234 ++ G + Sbjct: 214 LKHGLV 219 >gi|56421574|ref|YP_148892.1| hypothetical protein GK3039 [Geobacillus kaustophilus HTA426] gi|56381416|dbj|BAD77324.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 391 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 32/247 (12%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++ + +E + + F ++ + F ++ LH + +D+G I Sbjct: 157 WILRAQTFEESAAHI-----CFGFSYFLPFSRCALFQFVNQESTAIGLHGHGVDNGQIQR 211 Query: 67 ILIETYGDDFLF----------HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 + +E L H PI V +S Q + Sbjct: 212 LRVELDSIPMLKESVGKLKAEVHEFRHFRPIY--------VPRASEQFPRLYVDLFGLAS 263 Query: 117 GIAFPVRLGFH---------KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + PV + G F + L ++ A ++ K+ Sbjct: 264 LVIVPVYVPTEGRMIGGVVLDRGPGRFFAVDRRLFPALMKFGQSAGELLLKWIKAPKKEW 323 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A +L+ RE L+L DG ++ E A +L LS TV Y+ SA KL+A NR +A+AK Sbjct: 324 EGRAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAK 383 Query: 228 AIRFGYI 234 A+R G I Sbjct: 384 ALRLGLI 390 >gi|229164358|ref|ZP_04292288.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] gi|228619101|gb|EEK75997.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] Length = 215 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|229199533|ref|ZP_04326194.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] gi|228583938|gb|EEK42095.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] Length = 215 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|218232786|ref|YP_002370188.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160743|gb|ACK60735.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 215 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|206970021|ref|ZP_03230974.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229193664|ref|ZP_04320607.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] gi|206734598|gb|EDZ51767.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228589817|gb|EEK47693.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] Length = 215 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|261821119|ref|YP_003259225.1| LuxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|84620008|gb|ABC59302.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum] gi|261605132|gb|ACX87618.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 245 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 19/200 (9%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108 + + NY + + + D + + + P W ++ VI S + S L Sbjct: 44 VVIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNL 100 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML-ANEVIIE-----AHGACYQVITDFLE 162 G F + + + E L E I+E + Sbjct: 101 SKEYDIVNGYTFVLHDNNNNLAALSIMFEENALTDMENIVEKNKDKLQMLLIVIHEKITT 160 Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L K+ S ++RE L A G T EIA L + + TV ++G+ Sbjct: 161 LYKEITQTPQSKKQSDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVK 220 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +N AI + I Sbjct: 221 KLGVLNAKHAIRLGVELQLI 240 >gi|254462674|ref|ZP_05076090.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2083] gi|206679263|gb|EDZ43750.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium HTCC2083] Length = 165 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 8/165 (4%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + P+ W+ + + + G + P+R + + Sbjct: 1 MILGCYQRFHPVDWKRLDWSSKAARG--FRAEALEYGVGNQGFSIPMRGPNGQYALFTAS 58 Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGY 189 + + + LE R A + L+ RET + G+ Sbjct: 59 HHCSDEDWQTFKNKHRRQLILLAHFFNQKALEFEPDRVPEALKTLSPRETDAMTFLAMGF 118 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + A+ + +S HT+ Y+ SA KL A+N A+A+A+ G I Sbjct: 119 NRAKAADTMEISEHTLRVYIESARFKLGAINTTHAVARAMSHGLI 163 >gi|319781696|ref|YP_004141172.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167584|gb|ADV11122.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 236 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 8/229 (3%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP-- 65 G + +S +L+ + I A ++ L I D + N+ D+ ++ Sbjct: 14 GSRLTSRGDLTSFFMQLTAEIGADSYMLVAIVHDQDRNDAR---IVSSNWIFDAIELIGK 70 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 ++ P++ E + + + RL L + + +G Sbjct: 71 RLIAGLAQGALTVAPGIRPQPLVASRAPEADGLVTGEE--ARLLDVLGHAEIYSLRLNVG 128 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + + + + ++ A C ++ +L ++ L++RE CL Sbjct: 129 RQRLFALFSAATAGSIDQPALMRAQLKCCYALSHIPQLI-AAAAMQDPLSDRERECLFWV 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T++E+A LG+S +TVN+Y+ A K A NR AIA AIR G I Sbjct: 188 SEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGII 236 >gi|302035966|ref|YP_003796288.1| putative LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604030|emb|CBK40362.1| putative Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 265 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 13/232 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + E + + + + +Q+ + ++ +D R Y + Sbjct: 14 LGEIMYDARSVNRSDGVWKLVSAVQHVVPYE----FSGCGGVDLLRGVDPALGHSTYPRE 69 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + D ++ + + S E E S++L ++ Sbjct: 70 FCQLYMGQGLAA-DPAVYRLITSGQSVT-SSADEPAFSEPKDITSLKL--DFGIKTCLSA 125 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLT 175 VR Y F++ +++ + ++ ++ + L+ Sbjct: 126 GVRGEHGTCSYFAFSNFDAKQTDKLRLLLDILTPHFHLSYMRCHSAWNPERPAPPPTLLS 185 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +RE L+ G T+ EI+ L +S++TV +L + K+ NR AIA Sbjct: 186 KREEEILRWVAAGKTNWEISVILKVSLNTVKFHLKNVFQKIGVENRWSAIAY 237 >gi|254438346|ref|ZP_05051840.1| HTH DNA binding domain family [Octadecabacter antarcticus 307] gi|198253792|gb|EDY78106.1| HTH DNA binding domain family [Octadecabacter antarcticus 307] Length = 202 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 56/202 (27%), Gaps = 20/202 (9%) Query: 35 LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE 94 + FP + ++ D D + + I W +I Sbjct: 19 YIALRVGFAFPLEE-----VNALPAPWVDHYTTHRFMLHDPVIRWIYANTGAITWSAIDL 73 Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF--HKNGYVIFTSEFLMLANEVIIEAHGA 152 + G+A G + + F I H Sbjct: 74 -----PDPMRVLHQAQTFGLRYGVAVACFDGNREGQRSFGTFARSDREFEQAEIDALHAY 128 Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + NLT E L++ +G ++IA LG+S V L +A Sbjct: 129 VLK--------RHHAKAPPTNLTNAELEALRMVREGLRLKQIAHLLGISEGAVKQRLKNA 180 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL A QA A FG I Sbjct: 181 KNKLGAQTSAQAAAMVGEFGLI 202 >gi|51891787|ref|YP_074478.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855476|dbj|BAD39634.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 214 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 44/83 (53%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ + R A LTERET L+L G ++EIA L +S +TV ++ + Sbjct: 130 IAAKLVQVISQGGPARQEGAEGLTERETEILRLIASGAANKEIAAALFISENTVKTHISN 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R +A+ KA+ G++ Sbjct: 190 LFQKLGARDRTEAVTKALARGWL 212 >gi|302560338|ref|ZP_07312680.1| nitrate/nitrite response regulator [Streptomyces griseoflavus Tu4000] gi|302477956|gb|EFL41049.1| nitrate/nitrite response regulator [Streptomyces griseoflavus Tu4000] Length = 267 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 178 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 237 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 238 HVRNILEKLQLHSRMEAVVYAMREKIL 264 >gi|307726319|ref|YP_003909532.1| regulatory protein LuxR [Burkholderia sp. CCGE1003] gi|307586844|gb|ADN60241.1| regulatory protein LuxR [Burkholderia sp. CCGE1003] Length = 332 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 16/227 (7%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R+ ++ RI+ F ++ + R+ + D + Sbjct: 101 QDRMEFVRQRIRQLGFNSFSYTATRTSAHRKTMFVLTSYESQSWLTRYFRERYFELDPRV 160 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131 + +P +W ++ + + S + + +GI + L Sbjct: 161 ALASPTGMPFLWNTVDMRADLPRAQMRSERLGGLIDMLEETGRKSGILTQMPLPEPDLSA 220 Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181 + + + + E ++ AH + T + + +T E Sbjct: 221 SLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGMTPAQQHRVTLSELQHAV 280 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ G +EIA LGLS H V+ +L + NR+Q I A Sbjct: 281 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 327 >gi|300715701|ref|YP_003740504.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661] gi|299061537|emb|CAX58651.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661] Length = 247 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 21/216 (9%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 +A ++ + N + + + D L + P W Sbjct: 31 YAYAIMSKRNPADFS-----IISN-RQEWFKVYIENNFQFIDPVLITALYRMTPFSWDEN 84 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEA-- 149 + G F + + + + E +I+ Sbjct: 85 LMLNK-GVKVPKLFDMARNHDIINGYTFVLHDHNNNLVVLSIMLDKHCDDNIEELIQLNK 143 Query: 150 ---HGACYQVITDFLELFKKRSSAA--------RNLTERETSCLQLAGDGYTSEEIAEKL 198 +L++++S A T RE + A G + +EIA L Sbjct: 144 DKLQMLLITTHEKLTQLYQEQSRKADFEEMNTRELFTSRENEIIYWASVGKSYQEIALIL 203 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+ + TV ++G+A KL N AI I I Sbjct: 204 GIKLTTVKYHIGNAVKKLGVTNAKHAIRLGIELNLI 239 >gi|291453746|ref|ZP_06593136.1| two-component system response regulator [Streptomyces albus J1074] gi|291356695|gb|EFE83597.1| two-component system response regulator [Streptomyces albus J1074] Length = 267 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 178 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 237 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 238 HVRNILEKLQLHSRMEAVVYAMREKIL 264 >gi|2367439|gb|AAB69646.1| LuxR homolog [Pectobacterium betavasculorum] Length = 242 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 13/196 (6%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + + +Y + D+ + D + + + P W+ L Sbjct: 44 MIIISSYPDEWVDLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFDLSK 102 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE----AHGACYQVITDFLELF 164 G F + + S + + I E + + + L Sbjct: 103 KYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVEKFIEEKKDTFQMLLIEAYEEIISLC 162 Query: 165 KKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ + + L ++RE L A G T E+A LG+ TV ++G+ KL Sbjct: 163 REMIESKKQLHNKDIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 223 LNAKHAIRLGVELQLI 238 >gi|212640416|ref|YP_002316936.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561896|gb|ACJ34951.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 260 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG +++ IA+ L +S TV ++ + KL+ +R QA+ AI Sbjct: 193 PYHLLTRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVNDRTQAVVVAI 252 Query: 230 RFGYI 234 + G++ Sbjct: 253 KNGWV 257 >gi|114799307|ref|YP_759854.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114739481|gb|ABI77606.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 254 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 77/248 (31%), Gaps = 26/248 (10%) Query: 11 SSSLQELSPRLHLIQNRIKA----RNFALYTINSALDFP------RRQQLICELHNYDLD 60 S+ Q+ + + RI A +++ L P + L + + Sbjct: 3 SAGPQDTFSEVMDLARRIDAVGRETGLPYVAVSADLSDPSPMIGADGRPLAETVFRWVDP 62 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPI--------IWQSIQEETVIESSGQLSVRLEGGL 112 + P W+ ++ + G Sbjct: 63 GLAYWKDRAFALRAGIIRVVRVCGEPFCYHGGKMHSWRQVRALEAVNRKIDP--EAYGSY 120 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT--DFLELFKKRSSA 170 I P+ G V++ ++ + I EA GA ++ + Sbjct: 121 GVQGAIVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGAELYMLALKFLSAYKDAVLPS 180 Query: 171 ARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A T RE CL+ A G T EIA +G+S T+ ++ +A+ KL R Q I Sbjct: 181 ADPEMVEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIR 240 Query: 227 KAIRFGYI 234 A GYI Sbjct: 241 LATTLGYI 248 >gi|237846560|gb|ACR22888.1| SpsR [Serratia plymuthica] Length = 248 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 15/189 (7%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + + D L + + P W + G Sbjct: 52 EWFKFYTENNYQFIDPVLITASRRITPFSWDENLM-IDPGLKLPRIFDMARNYNIVNGYT 110 Query: 120 FPVRLGFHKNGYVIFTSEF--LMLANEVIIE----AHGACYQVITDFLELFKKRSSA--- 170 F + H + + I EL+K+ +S Sbjct: 111 FVLHDHNHNLVVLSIMIDKHCDDNIEGEIAANQDKLQMLLITTHDKTTELYKEINSPNYF 170 Query: 171 -----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++RE + A G + +EIA LG+ + T+ ++G+A KL N AI Sbjct: 171 DKMNNKEIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAI 230 Query: 226 AKAIRFGYI 234 + I Sbjct: 231 RLGVELQLI 239 >gi|199597190|ref|ZP_03210622.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258508705|ref|YP_003171456.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|199591994|gb|EDZ00069.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257148632|emb|CAR87605.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259650011|dbj|BAI42173.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 221 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL G +++EIA +L +++ TV ++ + KLD +R QA A++ Sbjct: 145 DELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKH 204 Query: 232 GYI 234 G + Sbjct: 205 GLV 207 >gi|317054417|ref|YP_004118442.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] gi|316952412|gb|ADU71886.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] Length = 241 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 16/197 (8%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 I + + ++ D + + + + PIIW + ++ ++ Sbjct: 42 IVVISSISKYFDEVYLAKKHQRIDPVIINALNRVSPIIWDENLMINSQWTINKIFNAVKP 101 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIF-------------TSEFLMLANEVIIEAHGACYQVI 157 +G F + + + ++ ++I+ H + Sbjct: 102 FYNIVSGQTFVLHDYNNNLVLLSLYINKYLMVDVNEKATKDRHDLQGLLIDTHEMMLHLY 161 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D ++ S L+ RE L + G T EIA L ++V TV ++G K+ Sbjct: 162 RDE---SERHKSEENMLSSRENEILYWSSTGKTYPEIAHMLNITVSTVKFHMGKIVKKMG 218 Query: 218 AVNRIQAIAKAIRFGYI 234 N AI+ AI I Sbjct: 219 VNNAKHAISLAIELNII 235 >gi|240145753|ref|ZP_04744354.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|257202169|gb|EEV00454.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|291536999|emb|CBL10111.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis M50/1] Length = 213 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 SS +LT RE L++ G ++EIAE L +S TV ++ + K+ +R Q Sbjct: 141 RDSDSSKIESLTRRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRTQ 200 Query: 224 AIAKAIRFGYI 234 A AIR I Sbjct: 201 AAVFAIRNNLI 211 >gi|297200099|ref|ZP_06917496.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297147573|gb|EDY61231.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 269 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 180 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 239 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 240 HVRNILEKLQLHSRMEAVVYAMREKIL 266 >gi|121998744|ref|YP_001003531.1| two component LuxR family transcriptional regulator [Halorhodospira halophila SL1] gi|121590149|gb|ABM62729.1| two component transcriptional regulator, LuxR family [Halorhodospira halophila SL1] Length = 217 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 18/222 (8%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + +Q + A+ + + ++ + ++ D + + G Sbjct: 6 VDDHQLFRAALQELLNAQGL------TTESGSGQDDVLGLVDSFGPDLVLLDLRMPGQDG 59 Query: 74 DDFLF--HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 L H LP++ T E L L G G + Sbjct: 60 LAVLRQIHERHPGLPVV-----MLTGSEEERDLFDCLRAGA---QGYLLKHNDPEYLISA 111 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + ++ + + + + LT RE L+ G ++ Sbjct: 112 LHQATDGKIAVAPQLTDT--LARALGQPPDRTEPGPPDPFAGLTPRERDILERLAAGESN 169 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + IA LG+S TV ++ S KL +R++A KA+ FG Sbjct: 170 KVIARHLGISDGTVKLHVKSVLRKLGVHSRVEAAIKAVDFGL 211 >gi|144899494|emb|CAM76358.1| regulatory protein, LuxR [Magnetospirillum gryphiswaldense MSR-1] Length = 253 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 4/187 (2%) Query: 52 CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 L + + D + PIIW + + + S ++ Sbjct: 65 LMLESLRSGYVEAKIATGMADADFYYQAAKCNPAPIIWGDLSLSDDADEQERRSFEVDCD 124 Query: 112 LLPFAGIAFPVR--LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKR 167 G P GF + + + T + + + +G + I ++ + Sbjct: 125 FGILTGATLPASFADGFGASAFSVHTPDLSFAGFDRMWRENGEAIRQIACAFDICMREDH 184 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE L +G ++IA L L TV ++ SA KL A QA+A Sbjct: 185 MPDFFPLSPREQEILLRLTEGLRPQQIAFLLSLHEGTVEKHIESARRKLKAATVTQAVAT 244 Query: 228 AIRFGYI 234 A+ FG I Sbjct: 245 ALIFGLI 251 >gi|167616524|ref|ZP_02385155.1| autoinducer-binding transcriptional regulator, LuxR family, putative [Burkholderia thailandensis Bt4] Length = 213 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 56/213 (26%), Gaps = 17/213 (7%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGD---IPNILIETYGDDFLFHFNSGLLPI 87 F P ++ NY + D Sbjct: 7 LGFQFCAYRLTAPIPITRRRTFVWSNYPNACAASPVLDADRSGRGADTDAQACGVT---- 62 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI- 146 V ES G A VR + G + F + E + Sbjct: 63 ----ADATQVFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELD 118 Query: 147 ---IEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E + L + + ++ E L +G T EI+ L +S Sbjct: 119 DIEPEMIWLAHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMS 178 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V +N ++ + KL A N+ A KA G I Sbjct: 179 VRNINFHIQNVVGKLGATNKTHAAVKATLVGLI 211 >gi|138894116|ref|YP_001124569.1| DNA-binding response regulator [Geobacillus thermodenitrificans NG80-2] gi|196250655|ref|ZP_03149344.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134265629|gb|ABO65824.1| DNA-binding response regulator [Geobacillus thermodenitrificans NG80-2] gi|196209874|gb|EDY04644.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 210 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 Y++ TS+ +A+ + HG +V+ + + LT RE Sbjct: 96 AGATSYLLKTSKASEIADAIRATFHGQSVLEPEVAGKVMQNRRRQRARL--PHEQLTSRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++E+A++L +S+ TV ++ + KL +R QA+ A R G + Sbjct: 154 MEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209 >gi|307331341|ref|ZP_07610462.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883019|gb|EFN14084.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 249 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 160 MAAKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 219 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 220 HVRNILEKLQLHSRMEAVVYAMREKIL 246 >gi|29831611|ref|NP_826245.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608727|dbj|BAC72780.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 248 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 159 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 218 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 219 HVRNILEKLQLHSRMEAVVYAMREKIL 245 >gi|209547914|ref|YP_002279831.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533670|gb|ACI53605.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 73/220 (33%), Gaps = 18/220 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILIETYGD 74 L L + + A ++ L + ++ D +++ Sbjct: 45 LQSGLRALTEYVGASHYLLARCDL---LQESGLDFIVSSDWPFDLVRDIANDLVRGYARS 101 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L P V + + + + +G + + Sbjct: 102 TELEKCMQVFQPNFALMPDSADVPDGASRQYC------------SVTFNVGRSRLALMFL 149 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E +L+ E + + V FL R LT+RE CL +G TS+EI Sbjct: 150 FGEGFILSPERLRDVGLLAGYV-ASFLRCGGTRVDRDFELTDRELECLFWIAEGKTSDEI 208 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 209 AMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|324329359|gb|ADY24619.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 215 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA A++ G + Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215 >gi|167578384|ref|ZP_02371258.1| autoinducer-binding transcriptional regulator, LuxR family, putative [Burkholderia thailandensis TXDOH] gi|257143030|ref|ZP_05591292.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 215 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 56/213 (26%), Gaps = 17/213 (7%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGD---IPNILIETYGDDFLFHFNSGLLPI 87 F P ++ NY + D Sbjct: 9 LGFQFCAYRLTAPIPITRRRTFVWSNYPNACAASPVLDADRSGRGADTDAQACGVT---- 64 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI- 146 V ES G A VR + G + F + E + Sbjct: 65 ----ADATQVFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELD 120 Query: 147 ---IEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E + L + + ++ E L +G T EI+ L +S Sbjct: 121 DIEPEMIWLAHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMS 180 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V +N ++ + KL A N+ A KA G I Sbjct: 181 VRNINFHIQNVVGKLGATNKTHAAVKATLVGLI 213 >gi|320010465|gb|ADW05315.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 250 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LTERE L+L G + +IA++L +S +TV Sbjct: 161 MASKLLTEFKSMIQRTDERRLVPAPRLTERELEVLKLVATGMNNRDIAKELFISENTVKN 220 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 221 HVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|30265432|ref|NP_847809.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530989|ref|YP_022338.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188248|ref|YP_031501.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481286|ref|YP_039401.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145220|ref|YP_086677.1| response regulator [Bacillus cereus E33L] gi|65317392|ref|ZP_00390351.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118480442|ref|YP_897593.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165871317|ref|ZP_02215966.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635732|ref|ZP_02394042.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640431|ref|ZP_02398695.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688212|ref|ZP_02879423.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708051|ref|ZP_02898499.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651955|ref|ZP_02934538.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568889|ref|ZP_03021791.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036150|ref|ZP_03103550.1| DNA-binding response regulator [Bacillus cereus W] gi|196041030|ref|ZP_03108327.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045422|ref|ZP_03112653.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906592|ref|YP_002454426.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225867394|ref|YP_002752772.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227818179|ref|YP_002818188.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228918025|ref|ZP_04081555.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930420|ref|ZP_04093421.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936698|ref|ZP_04099489.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949137|ref|ZP_04111407.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124916|ref|ZP_04254092.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|229187641|ref|ZP_04314778.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|229603380|ref|YP_002869624.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687146|ref|ZP_05151004.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724071|ref|ZP_05185856.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735533|ref|ZP_05193240.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742202|ref|ZP_05199889.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755887|ref|ZP_05207919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761599|ref|ZP_05213619.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056878|ref|YP_003795089.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30260110|gb|AAP29295.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47506137|gb|AAT34813.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182175|gb|AAT57551.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332842|gb|AAT63488.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978689|gb|AAU20239.1| response regulator [Bacillus cereus E33L] gi|118419667|gb|ABK88086.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164712984|gb|EDR18512.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511651|gb|EDR87033.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528841|gb|EDR91598.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127024|gb|EDS95903.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667905|gb|EDT18657.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082659|gb|EDT67723.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190559956|gb|EDV13939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991317|gb|EDX55285.1| DNA-binding response regulator [Bacillus cereus W] gi|196023629|gb|EDX62305.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028198|gb|EDX66808.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218537324|gb|ACK89722.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225787376|gb|ACO27593.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227004175|gb|ACP13918.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228595795|gb|EEK53478.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|228658546|gb|EEL14210.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|228810578|gb|EEM56929.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822907|gb|EEM68748.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829267|gb|EEM74903.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841613|gb|EEM86727.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267788|gb|ACQ49425.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300379047|gb|ADK07951.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 215 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA A++ G + Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215 >gi|302551827|ref|ZP_07304169.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302469445|gb|EFL32538.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 270 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 181 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 240 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 241 HVRNILEKLQLHSRMEAVVYAMREKIL 267 >gi|152974963|ref|YP_001374480.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023715|gb|ABS21485.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 210 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIRFGYI 234 + A R I Sbjct: 200 VIYAFRHQLI 209 >gi|182438321|ref|YP_001826040.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778972|ref|ZP_08238237.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466837|dbj|BAG21357.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659305|gb|EGE44151.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 251 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LTERE L+L G + +IA++L +S +TV Sbjct: 162 MASKLLTEFKSMIQRTDERRLVPAPRLTERELEVLKLVATGMNNRDIAKELFISENTVKN 221 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 222 HVRNILEKLQLHSRMEAVVYAMREKIL 248 >gi|295699018|ref|YP_003606911.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438231|gb|ADG17400.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 333 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 16/227 (7%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R+ ++ RI+ F ++ + + + D + Sbjct: 102 QDRMEFVRQRIRQLGFDSFSYTATRTSSHHKTMFVLTSYESQAWLTRYFRERYFELDPRV 161 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131 H + +P +W + + + S + + +GI + L + Sbjct: 162 AHASPTGMPFLWNTADLRADLPRAQLRSERLGALIDMLEAAGRKSGILTQMPLPEPELSA 221 Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSC 181 + + + + E ++ AH + T + + + L++ + + Sbjct: 222 SLCFNSEIGNPRWMTESIVAETLMFAHSIHEFIWTHAKSVIGIAPAQQQRIALSKLQHAV 281 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ G +EIA LGLS H V+ +L + NR+Q I A Sbjct: 282 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328 >gi|91777853|ref|YP_553061.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690513|gb|ABE33711.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 333 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 16/227 (7%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R+ ++ RI+ F ++ ++ + + D + Sbjct: 102 QDRIEFVRQRIRQLGFDSFSYSATRTSAHHKTMFVLTSYESRSWLTRYFRERYFELDPRV 161 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131 + LP +W + + + S + + +GI + L + Sbjct: 162 ALASPTGLPFLWNTADMRADLPRAQMRSERLGGLIDMLEATGRKSGILTQMPLPEPELSA 221 Query: 132 VIFTSEF--------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181 + + + E ++ AH + T + + + +T E Sbjct: 222 SLCFNSETGNPRWMTESIVAETLMFAHMIHEFIWTHAKSVIGIAPAQQQRVTLSELQHAV 281 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ G +EIA LGLS H V+ +L + NR+Q I A Sbjct: 282 LRAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328 >gi|294629677|ref|ZP_06708237.1| nitrate/nitrite response regulator [Streptomyces sp. e14] gi|292833010|gb|EFF91359.1| nitrate/nitrite response regulator [Streptomyces sp. e14] Length = 267 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 178 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 237 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 238 HVRNILEKLQLHSRMEAVVYAMREKIL 264 >gi|221633642|ref|YP_002522868.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] gi|221156159|gb|ACM05286.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] Length = 245 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L + S LT RE L GY+++EIA+ L +S TV ++ S KL Sbjct: 145 FRELSRLDRTSSGFFSPLTPREIEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKL 204 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+ A+R G+I Sbjct: 205 AVNDRTQAVIYALRHGWI 222 >gi|229176087|ref|ZP_04303581.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] gi|228607431|gb|EEK64759.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] Length = 215 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANTLLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|75760127|ref|ZP_00740188.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900537|ref|YP_002448948.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903890|ref|ZP_04068005.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] gi|228968544|ref|ZP_04129531.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|74492399|gb|EAO55554.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542579|gb|ACK94973.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791148|gb|EEM38763.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|228855799|gb|EEN00344.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] Length = 215 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANTLLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|302521432|ref|ZP_07273774.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302430327|gb|EFL02143.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 264 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 42/77 (54%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + ++R A LT+RE L+L G +++IA++L +S +TV ++ + KL Sbjct: 185 SMIQRTDERRLVPAPRLTDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQ 244 Query: 218 AVNRIQAIAKAIRFGYI 234 +R++A+ A+R + Sbjct: 245 LHSRMEAVVYAMREKIL 261 >gi|318056754|ref|ZP_07975477.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078616|ref|ZP_07985948.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333024919|ref|ZP_08452983.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744771|gb|EGJ75212.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 250 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 42/77 (54%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + ++R A LT+RE L+L G +++IA++L +S +TV ++ + KL Sbjct: 171 SMIQRTDERRLVPAPRLTDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQ 230 Query: 218 AVNRIQAIAKAIRFGYI 234 +R++A+ A+R + Sbjct: 231 LHSRMEAVVYAMREKIL 247 >gi|89095961|ref|ZP_01168855.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89089707|gb|EAR68814.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 160 PLHLLTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 219 Query: 230 RFGYI 234 + G++ Sbjct: 220 KNGWV 224 >gi|148658361|ref|YP_001278566.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570471|gb|ABQ92616.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 226 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + + V G Q + LT Sbjct: 106 LRAGVAGYLLKDASRREIIGAVRQVLRGDAFLNPDLVMQTLRRLASATPDDEPPVEPLTA 165 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G T+ EIA +L +S TV ++ KL +R QA +A+ G + Sbjct: 166 REQQVLKLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGLV 223 >gi|297159907|gb|ADI09619.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 252 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 163 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 222 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 223 HVRNILEKLQLHSRMEAVVYAMREKIL 249 >gi|332096683|gb|EGJ01674.1| regulatory protein sdiA [Shigella boydii 3594-74] Length = 147 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 5/147 (3%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF----TSEFLMLANEVIIE 148 + S Q G+ + L G++ F T E +L++E+ ++ Sbjct: 1 MWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 60 Query: 149 AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 61 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 120 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 121 HQKNMQKKINAPNKTQVACYAAATGLI 147 >gi|302544912|ref|ZP_07297254.1| nitrate/nitrite response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462530|gb|EFL25623.1| nitrate/nitrite response regulator [Streptomyces himastatinicus ATCC 53653] Length = 249 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 160 MAAKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 219 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 220 HVRNILEKLQLHSRMEAVVYAMREKIL 246 >gi|170692623|ref|ZP_02883785.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170142279|gb|EDT10445.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 332 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 73/227 (32%), Gaps = 16/227 (7%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R+ ++ RI+ F ++ + R+ + D + Sbjct: 101 QDRIEFVRQRIRQLGFNSFSYTATRTSAHRKTMFVLTSYESQSWLTRYFRERYFELDPRV 160 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131 + +P +W ++ + + S + + +GI + L + Sbjct: 161 ALASPTGMPFLWNTVDMRADLPRAQMRSERLGGLIDMLEATGRKSGILTQMPLPEPELSA 220 Query: 132 VIFTSEFLM--------LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181 + + + + E ++ AH + T + + +T E Sbjct: 221 SLCFNSEIANPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGMTPAQQHRVTLSELQHAV 280 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ G +EIA LGLS H V+ +L + NR+Q I A Sbjct: 281 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 327 >gi|294499258|ref|YP_003562958.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349195|gb|ADE69524.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 212 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 40/79 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++T + +K+ + +LT+RE L+ G +++EI L ++ TV ++ + Sbjct: 133 HLLTRLTKSSEKKVNFIDHLTKREKDVLKEIAKGKSNKEIGVALHITEKTVKTHVSNILS 192 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL +R QA A++ G Sbjct: 193 KLGVQDRTQAALYAVQHGI 211 >gi|83716249|ref|YP_439875.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650074|gb|ABC34138.1| autoinducer-binding transcriptional regulator, LuxR family, putative [Burkholderia thailandensis E264] Length = 238 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 62/235 (26%), Gaps = 20/235 (8%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD---IP 65 + S S + + + F P ++ NY + Sbjct: 13 RASRSAGDAFDVVLQRGTEL---GFQFCAYRLTAPIPITRRRTFVWSNYPNACAASPVLD 69 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D V ES G A VR Sbjct: 70 ADRSGRGADTDAQACGVT--------ADATQVFESMADGLWAETSDQGVRYGWALSVRDR 121 Query: 126 FHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTERET 179 + G + F + E + E + L + + ++ E Sbjct: 122 WGAVGTLKFARGTREIVQEELDDIEPEMIWLAHLAHDTIGSLMRDETIPGEIARVSLVER 181 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T EI+ L +SV +N ++ + KL A N+ A KA G I Sbjct: 182 QILLWTAEGKTVSEISSILQMSVRNINFHIQNVVGKLGATNKTHAAVKATLVGLI 236 >gi|282865219|ref|ZP_06274272.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560142|gb|EFB65691.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 250 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LTERE L+L G + +IA++L +S +TV Sbjct: 161 MASKLLTEFKSMIQRTDERRLVPAPRLTERELEVLKLVATGMNNRDIAKELFISENTVKN 220 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 221 HVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|89100435|ref|ZP_01173298.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89084864|gb|EAR64002.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 214 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + LTERE L G+G T++EI+ +L + + TV ++ + KL +R Sbjct: 136 RLRGREKKPHEELTERELEVLLCIGEGMTNQEISNQLFIGIKTVKTHVSNILSKLSVSDR 195 Query: 222 IQAIAKAIRFGYI 234 QA A + G I Sbjct: 196 TQAAVYAHQNGLI 208 >gi|259419174|ref|ZP_05743091.1| transcriptional regulator AhyR/asaR family [Silicibacter sp. TrichCH4B] gi|259345396|gb|EEW57250.1| transcriptional regulator AhyR/asaR family [Silicibacter sp. TrichCH4B] Length = 229 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 71/232 (30%), Gaps = 12/232 (5%) Query: 11 SSSLQELSPRLHL-IQNRIKARNFALYTINSAL-DFPRRQQLICELHNYDLDSGDIPNIL 68 ++ +L ++ + +++ + + + I E D Sbjct: 1 MGTVADLVDAVYADLGPQVQGLVYDYSPVPFSHEPGRFVLPEIIEARGAAEVLVDDWCGR 60 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG------QLSVRLEGGLLPFAGIAFPV 122 D L P +W EE + + G+ P+ Sbjct: 61 SLYRADPVQRRAAKILNPFVWSYHAEECSVIREDLGQGDVREVRERLLDWTLGRGMTVPL 120 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 L + E + Q + + A LT RE CL Sbjct: 121 HLPGRGFATLSAFVEGRA----DMDMLARFALQAFELQDRISVELRQARGPLTLREAECL 176 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++++IA +L S V +L +A KL A NR A+A A R G+I Sbjct: 177 SHTAAGLSAKQIAHELNRSESMVVKHLQAAASKLGARNRSHAVAIATRQGWI 228 >gi|323529462|ref|YP_004231614.1| Autoinducer-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|323386464|gb|ADX58554.1| Autoinducer-binding domain protein [Burkholderia sp. CCGE1001] Length = 332 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 16/227 (7%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R+ ++ RI+ F ++ + R+ + D + Sbjct: 101 QDRIEFVRQRIRQLGFNSFSYTATRTSAHRKTMFVLTSYESQSWLTRYFRERYFELDPRV 160 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131 + LP +W ++ + + S + + +GI + L + Sbjct: 161 ALASPTGLPFLWNTVDMRADLPRAQMRSERLGSLIDMLEATGRKSGILTQMPLPEPELSA 220 Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181 + + + + E ++ AH + T + + +T E Sbjct: 221 SLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGMTPAQQHRVTLSELQHAV 280 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ G +EIA LGLS H V+ +L + NR+Q I A Sbjct: 281 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 327 >gi|300117929|ref|ZP_07055696.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298724793|gb|EFI65468.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 215 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA A++ G + Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215 >gi|290959922|ref|YP_003491104.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260649448|emb|CBG72563.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 249 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 160 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 219 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 220 HVRNILEKLQLHSRMEAVVYAMREKIL 246 >gi|206975855|ref|ZP_03236766.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962901|ref|YP_002341479.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098883|ref|YP_002532941.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229142155|ref|ZP_04270680.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] gi|206745949|gb|EDZ57345.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217063637|gb|ACJ77887.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242942|gb|ACM15652.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228641444|gb|EEK97750.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] Length = 215 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGVV 215 >gi|42784585|ref|NP_981832.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740517|gb|AAS44440.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 215 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGVV 215 >gi|308175040|ref|YP_003921745.1| transcriptional regulatory protein liaR [Bacillus amyloliquefaciens DSM 7] gi|307607904|emb|CBI44275.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens DSM 7] gi|328555009|gb|AEB25501.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens TA208] gi|328913364|gb|AEB64960.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens LL3] Length = 210 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V++ + LT+RE L L +G T++EI E+L +++ TV ++ + Sbjct: 129 VAGKVLSRLRHSENQL--PHETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITN 186 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A R + Sbjct: 187 ILSKLDVSDRTQAAVYAHRNHLV 209 >gi|188586933|ref|YP_001918478.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351620|gb|ACB85890.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 228 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 7/90 (7%) Query: 152 ACYQVITDFLELFKKRS-------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++++ +F L + + LT RE L+L GYT++EI+++L +S T Sbjct: 137 ITHKLLGEFNRLAQNSPRNIKSDEAVQSELTGREKEILELMAQGYTNKEISKELYISEKT 196 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ + K+D +R QA+ A++ G + Sbjct: 197 VKNHVSNILRKMDVTDRTQAVITALKCGVV 226 >gi|297194044|ref|ZP_06911442.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152083|gb|EFH31522.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 253 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 164 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 223 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 224 HVRNILEKLQLHSRMEAVVYAMREKIL 250 >gi|254387129|ref|ZP_05002401.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345946|gb|EDX26912.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 154 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 214 HVRNILEKLQLHSRMEAVVYAMREKIL 240 >gi|154687422|ref|YP_001422583.1| YvqC [Bacillus amyloliquefaciens FZB42] gi|154353273|gb|ABS75352.1| YvqC [Bacillus amyloliquefaciens FZB42] Length = 210 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V++ + LT+RE L L +G T++EI E+L +++ TV ++ + Sbjct: 129 VAGKVLSRLRHSENQL--PHETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITN 186 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A R + Sbjct: 187 ILSKLDVSDRTQAAVYAHRNHLV 209 >gi|254452750|ref|ZP_05066187.1| transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] gi|198267156|gb|EDY91426.1| transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] Length = 170 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 50/180 (27%), Gaps = 15/180 (8%) Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 D D + + I W +I + Sbjct: 4 LPAPWVDHYTTHRFMLHDPVIRWIYANTGAIRWSAIDL-----PDPMRVLDQAQTFGLRY 58 Query: 117 GIAFPVRLGF--HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G+A G + + F I H Q + NL Sbjct: 59 GVAVACFDGNREGQRSFGTFARSDREFEQAEIDALHAYVVQ--------RHHAKAPPTNL 110 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E L++ +G ++IA L +S V L +A +KL A QA A FG I Sbjct: 111 THAELEALRMIKEGLRLKQIAYSLSISEGAVKQRLKNAKIKLGAQTSAQAAAMVREFGLI 170 >gi|148554913|ref|YP_001262495.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148500103|gb|ABQ68357.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 278 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 12/190 (6%) Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF- 115 +D D + P + Sbjct: 73 WDPDGAQWWQDVRFGLRAPVAEACRVESRPFWANRDGARDRDGTPILRQFDFAAHYGRLV 132 Query: 116 ---AGIAFPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDF-------LELF 164 AGI PV L F + G V F + ++ H ++ LE Sbjct: 133 ENPAGIVVPVHLPFSRIGMVSFSCRDNRRDDLSRELDEHFETLYLLGHLFIEGYARLETG 192 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + A LT E +CL+ G T +EIA +G + T+ +L +A +KL A NR QA Sbjct: 193 DRWLPDAVTLTRLEVNCLRWVARGKTDDEIATIMGRARPTIRFHLQNAAIKLGAANRSQA 252 Query: 225 IAKAIRFGYI 234 + +A + GY+ Sbjct: 253 VFRAGQLGYL 262 >gi|89097699|ref|ZP_01170587.1| YhcZ [Bacillus sp. NRRL B-14911] gi|89087558|gb|EAR66671.1| YhcZ [Bacillus sp. NRRL B-14911] Length = 211 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 39/86 (45%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H + L K+ S LT+RE L+ G +++EIA L ++ TV + Sbjct: 126 LHPKATSHLLSHLSNKDKKKSPIDELTKRELDVLKEIAKGKSNKEIAASLFITEKTVKTH 185 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL+ +R QA A+R + Sbjct: 186 VSNLLSKLEISDRTQAALLAVREKLV 211 >gi|239941686|ref|ZP_04693623.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988145|ref|ZP_04708809.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445128|ref|ZP_06584518.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348075|gb|EFE74979.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 251 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LTERE L+L G + +IA++L +S +TV Sbjct: 162 MASKLLTEFKSMIQRTDERRLVPAPRLTERELEVLKLVATGMNNRDIAKELFISENTVKN 221 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 222 HVRNILEKLQLHSRMEAVVYAMREKIL 248 >gi|229158972|ref|ZP_04287029.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] gi|228624583|gb|EEK81353.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPFIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA A++ G + Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215 >gi|84498193|ref|ZP_00996990.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381693|gb|EAP97576.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 202 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 Q+I +F L K ++A LTERE L L G ++EIA +L +S +TV Sbjct: 112 HMASQLIAEFSRLSNEPPKEATAGPRLTERELEVLGLVARGKANKEIATQLFISENTVKN 171 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A A+R I Sbjct: 172 HVRNILEKLQLHSRVEAALYAMRRNLI 198 >gi|239981891|ref|ZP_04704415.1| two-component system response regulator [Streptomyces albus J1074] Length = 243 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 154 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 214 HVRNILEKLQLHSRMEAVVYAMREKIL 240 >gi|298246329|ref|ZP_06970135.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553810|gb|EFH87675.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 233 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 23/166 (13%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML----ANEVII 147 + E I + +L I F + + I L + I Sbjct: 66 LDLEMPIMDGVEAIKQLRQRRQNARIIVFTAFDTDERIIHAIQAGADGYLLKGSPRDEIF 125 Query: 148 EAHGACYQ--------VITDFLELFKKRS-----------SAARNLTERETSCLQLAGDG 188 +A + V + L +R LTERE L+L G Sbjct: 126 KAIRLAMEGGSLLQPLVASKLLRHMGQRERENNYRTLQGIPRVEELTERELEVLRLLAQG 185 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA L +S T ++ S KL A NR +A+A A + G I Sbjct: 186 MPNKEIASHLVISERTAKFHVSSIMSKLGATNRTEAVALAAQRGLI 231 >gi|21221451|ref|NP_627230.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256787364|ref|ZP_05525795.1| two-component system response regulator [Streptomyces lividans TK24] gi|289771263|ref|ZP_06530641.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799203|emb|CAB90919.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701462|gb|EFD68891.1| two-component system response regulator [Streptomyces lividans TK24] Length = 252 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 163 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 222 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 223 HVRNILEKLQLHSRMEAVVYAMREKIL 249 >gi|213581754|ref|ZP_03363580.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 198 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 13/192 (6%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ F+ L ++ EV + + ++ L + ++RE Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREK 185 Query: 180 SCLQLAGDGYTS 191 L+ +G TS Sbjct: 186 EILKWTAEGKTS 197 >gi|118593080|ref|ZP_01550467.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118434387|gb|EAV41041.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 233 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 4/182 (2%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII--WQSIQEETVIESSGQLSVRL 108 + D FL H + + + + + + + Sbjct: 48 VTVRTTLSDGFQTFYWENGYQKDDPFLRHCMTSPVAVATGADYLDRYDYLNERSRRLILS 107 Query: 109 EGGLLPFAGIAF--PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 AG + PV G+ I +S + E + Sbjct: 108 AAEDGFRAGFSVVAPVPEQRRALGWNIGSSLRRAEVERIRQEREPLIRLALVAVQNRLDG 167 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + +LT RE CL L G + IA +LG+ TV +LG+A KL A R A+A Sbjct: 168 PEAVRASLTPRELECLSLIASGLRVKAIAAELGIQPVTVELHLGNARKKLGAATREHAVA 227 Query: 227 KA 228 A Sbjct: 228 LA 229 >gi|194015561|ref|ZP_03054177.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|194012965|gb|EDW22531.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 229 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ DG ++ I E L +S TV ++ + K++ NR QA+ AI Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNNRTQAVVVAI 221 Query: 230 RFGYI 234 + G++ Sbjct: 222 KNGWV 226 >gi|190890349|ref|YP_001976891.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695628|gb|ACE89713.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 18/225 (8%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69 +S L L + + A ++ L + ++ D +++ Sbjct: 40 ASTGRLQSGLRALTEYVGASHYLLARCDL---IQESGLDFVVSSDWPFDLVKDIANDLVS 96 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 L P + + E + + +G + Sbjct: 97 GYARSTELEKCMQVFQP-NFALLPESAAVPEGAS-----------RQYCSLTFNVGRSRL 144 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + E +L+ E + + V FL R LT+RE CL +G Sbjct: 145 ALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGARVDRDFELTDRELECLFWIAEGK 203 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 204 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|47568528|ref|ZP_00239227.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228988639|ref|ZP_04148725.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554770|gb|EAL13122.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228771090|gb|EEM19570.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPFIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA A++ G + Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215 >gi|30023441|ref|NP_835072.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228961674|ref|ZP_04123282.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051082|ref|ZP_04194629.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|229112824|ref|ZP_04242356.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|229130659|ref|ZP_04259615.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|229147955|ref|ZP_04276296.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|296505833|ref|YP_003667533.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|29899002|gb|AAP12273.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228635605|gb|EEK92094.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|228652998|gb|EEL08880.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|228670658|gb|EEL25970.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|228722293|gb|EEL73691.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|228798024|gb|EEM45029.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326885|gb|ADH09813.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K ++ LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|163943094|ref|YP_001647978.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014574|ref|ZP_04171690.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] gi|229065062|ref|ZP_04200357.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|229136229|ref|ZP_04264978.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|229170116|ref|ZP_04297805.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|163865291|gb|ABY46350.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|228613347|gb|EEK70483.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|228647209|gb|EEL03295.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|228716204|gb|EEL67920.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|228746726|gb|EEL96613.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPQEEKEEEPSVQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA A++ G + Sbjct: 190 MSSILSKLHLSDRTQAALYAVKNGIV 215 >gi|192822729|gb|ACF06195.1| PanR [Pantoea sp. CWB304] Length = 246 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 20/231 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 ++ L +A IN + L N+ D ++ D Sbjct: 15 INDHLAEKIEFYGDVKYAYAIINKENPIE-----MMVLTNH-ADWVELYLKNNYQLVDPV 68 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--- 133 + S + +W + + R+ +G F + + + Sbjct: 69 IIKCLSSVESFLWDE-DIMFKAQYKLPMIFRMGKNYDIKSGCTFVLHDYNNNMALLSIMM 127 Query: 134 --FTSE--------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 E ++I AH + + E+ ++ LT RE L Sbjct: 128 GEHCREETKTSILNDRDRLQSLLISAHTKILSLYQEESEIIQQEKKKPGLLTSRENDVLY 187 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G T EIA L + TV ++ + KL +N AI I I Sbjct: 188 LASQGKTYSEIACSLKVKEVTVKFHMANVVKKLGVMNAKHAINLGIELKLI 238 >gi|16080361|ref|NP_391188.1| two-component response regulator YvqE responding to cell wall stress [Bacillus subtilis subsp. subtilis str. 168] gi|221311254|ref|ZP_03593101.1| hypothetical protein Bsubs1_17956 [Bacillus subtilis subsp. subtilis str. 168] gi|221315581|ref|ZP_03597386.1| hypothetical protein BsubsN3_17872 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320496|ref|ZP_03601790.1| hypothetical protein BsubsJ_17835 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324780|ref|ZP_03606074.1| hypothetical protein BsubsS_17986 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312856|ref|YP_004205143.1| two-component response regulator YvqE [Bacillus subtilis BSn5] gi|68051995|sp|O32197|LIAR_BACSU RecName: Full=Transcriptional regulatory protein liaR gi|2635805|emb|CAB15298.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. subtilis str. 168] gi|2832821|emb|CAA11745.1| YvqC protein [Bacillus subtilis] gi|320019130|gb|ADV94116.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis BSn5] Length = 211 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V++ + +LT+RE L L +G T++EI E+L +++ TV ++ + Sbjct: 129 VAGKVLSRLRHSGENALP-HESLTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITN 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A R + Sbjct: 188 ILSKLDVSDRTQAAVYAHRNHLV 210 >gi|163848189|ref|YP_001636233.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222526094|ref|YP_002570565.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669478|gb|ABY35844.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449973|gb|ACM54239.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLG 199 I + A +V LE F++ L+ RE L+L G+T+ EIA +L Sbjct: 127 INDLVLASPEVAATVLEAFRQMVGDDDIQTIFSPLSARELEVLELVAAGHTNREIAARLD 186 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV ++ S KL +R QA+ A+R G+I Sbjct: 187 ISNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|167464395|ref|ZP_02329484.1| Two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 241 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L S + LT+RE L+L +G +++ I E L +S TV ++ S K Sbjct: 164 AHDSALRY---IDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQK 220 Query: 216 LDAVNRIQAIAKAIRFGYI 234 ++ +R QA+ AI+ G++ Sbjct: 221 MEVDDRTQAVIIAIKNGWV 239 >gi|297571014|ref|YP_003696788.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296931361|gb|ADH92169.1| two component transcriptional regulator, LuxR family [Arcanobacterium haemolyticum DSM 20595] Length = 230 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ TD + L + +LT+RE L G T+ EIA++L ++ TV ++ Sbjct: 140 RLVDRLATDSIRLHASKPEVLDDLTDREREVFYLIARGLTNTEIADRLYVAEATVKTHVT 199 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 KL +R+QA+ A G Sbjct: 200 RIFAKLGVRDRVQAVVIAYEAGI 222 >gi|218673112|ref|ZP_03522781.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 96 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 65/95 (68%), Positives = 79/95 (83%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 L++++I+E HG C ++ D L L ++R+ AA L+ERE +CLQLAGDG SEEIAEKLG Sbjct: 1 DLSSDMIVELHGRCCHIMMDLLSLDERRTGAAEALSEREIACLQLAGDGRISEEIAEKLG 60 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 61 LSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 95 >gi|328882798|emb|CCA56037.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 250 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 161 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 220 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 221 HVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|326334186|ref|ZP_08200409.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] gi|325947977|gb|EGD40094.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] Length = 212 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAE 196 ++ + +I A + RS LT+RE L L G + EIA+ Sbjct: 112 RVVADGQSLISPSMAAKLMEEFKQMARPDRSPVPGPKLTDRELEVLGLVAKGLNNREIAK 171 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S +TV ++ + KL A +R++A+ A+R + Sbjct: 172 RLFISENTVKNHVRNILEKLQAHSRMEAVMYAVRQKLL 209 >gi|229089048|ref|ZP_04220402.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] gi|228694270|gb|EEL47892.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IASSLLSQTLPQEEAEVPSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA A++ G + Sbjct: 190 VSSILSKLQLSDRTQAALYAVKNGIV 215 >gi|291485797|dbj|BAI86872.1| hypothetical protein BSNT_04924 [Bacillus subtilis subsp. natto BEST195] Length = 211 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V++ + +LT+RE L L +G T++EI E+L +++ TV ++ + Sbjct: 129 VAGKVLSRLRHSGENELP-HESLTKRELEILFLIAEGKTNKEIGEELFITIKTVKTHITN 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A R + Sbjct: 188 ILSKLDVSDRTQAAVYAHRNHLV 210 >gi|241203092|ref|YP_002974188.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856982|gb|ACS54649.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 18/225 (8%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69 +S L L + + + A Y + ++ D +++ Sbjct: 40 ASTGRLQSGLRALTDYVGAS---YYLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVR 96 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 L P + + + + + +G + Sbjct: 97 GYARSTELEKCMQVFQP-NFALLPDSAEVPDGAS-----------RQYCSVTFNVGRSRL 144 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + E +L+ E + + V FL + LT+RE CL +G Sbjct: 145 ALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGTKVDRDFELTDRELECLFWIAEGK 203 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 204 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|254392873|ref|ZP_05008042.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812928|ref|ZP_06771571.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706529|gb|EDY52341.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325527|gb|EFG07170.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 269 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 180 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 239 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 240 HVRNILEKLQLHSRMEAVVYAMREKIL 266 >gi|295402434|ref|ZP_06812387.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312112712|ref|YP_003991028.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975525|gb|EFG51150.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311217813|gb|ADP76417.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 210 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L G T++EIA++L ++V TV ++ + KL +R QA+ A Sbjct: 145 PHEELTNREMEVLLLMAQGKTNQEIADELFIAVKTVKVHVSNILSKLGVQDRTQAVIYAF 204 Query: 230 RFGYI 234 + + Sbjct: 205 KHSLV 209 >gi|239930904|ref|ZP_04687857.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439281|ref|ZP_06578671.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342176|gb|EFE69132.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 159 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 218 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 219 HVRNILEKLQLHSRMEAVVYAMREKIL 245 >gi|311031947|ref|ZP_07710037.1| two-component response regulator DegU [Bacillus sp. m3-13] Length = 239 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG +++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 172 PLHLLTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 231 Query: 230 RFGYI 234 + G++ Sbjct: 232 KNGWV 236 >gi|238796086|ref|ZP_04639597.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] gi|238720031|gb|EEQ11836.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] Length = 240 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 18/199 (9%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + N+ + + D L ++P W Sbjct: 41 PSDFVVISNW-KKWFEFYTQNNFQFTDPVLLMAAHRIMPFSWDENIILKFP-----RLFD 94 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL 163 + G F + + +++ + E+I + L Sbjct: 95 MAKEYNMINGYTFVLHDQHSNLVVLSLSADKNIDVEEIIGDDKGNIQLLLMITHEKMTSL 154 Query: 164 FKKRSSAA--------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +K +S + RE + A G + +EIA LG+ + T+ ++G K Sbjct: 155 YKDLNSKNNYYKMNGNEIFSNRENEIIYWASVGKSYQEIALILGVKLTTIKNHMGKVVRK 214 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L N AI+ A+ I Sbjct: 215 LGVTNAKHAISIAVELQLI 233 >gi|296331212|ref|ZP_06873685.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675910|ref|YP_003867582.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151663|gb|EFG92539.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414154|gb|ADM39273.1| two-component response regulator [liaS] responding to cell wall stress [Bacillus subtilis subsp. spizizenii str. W23] Length = 211 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V++ + +LT+RE L L +G T++EI E+L +++ TV ++ + Sbjct: 129 VAGKVLSRLRHSGEHALP-HESLTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITN 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A R + Sbjct: 188 ILSKLDVSDRTQAAVYAHRNHLV 210 >gi|307943595|ref|ZP_07658939.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307773225|gb|EFO32442.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 232 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 11/218 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L +L + I AL ++ + + H D + D+ Sbjct: 25 LEAQLTNLSATIGFS--ALKALHVRRENSKTSYRFVSAHR-DAGWQLQVGRSSPIFSDEL 81 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + T + + + + + P +G + F Sbjct: 82 IENAARQKTAF--------TKHDCAAGRTNNPTDDQTSASTVFVPTFDRCGLSGLIAFIG 133 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L+ +I H A + F L + ++ +LT RE CL+ + +G TS EIAE Sbjct: 134 IPSDLSGVIINLLHLAGLYTSSRFAALLFEEATNPTDLTPREVECLKWSSNGLTSSEIAE 193 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KLG+S HT + YL AT KL A NR A+ A R G I Sbjct: 194 KLGISRHTADWYLKEATQKLGAQNRTHAVMIAYRKGLI 231 >gi|311069822|ref|YP_003974745.1| two-component response regulator YvqE [Bacillus atrophaeus 1942] gi|310870339|gb|ADP33814.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus atrophaeus 1942] Length = 211 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 37/74 (50%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + LT+RE L L +G T++EI E+L +++ TV ++ + KL+ + Sbjct: 137 LRHSNDSALPHETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHVTNILSKLEVAD 196 Query: 221 RIQAIAKAIRFGYI 234 R QA A R + Sbjct: 197 RTQAAVYAHRNKLV 210 >gi|228942557|ref|ZP_04105092.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975490|ref|ZP_04136045.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982123|ref|ZP_04142415.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228777661|gb|EEM25936.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228784284|gb|EEM32308.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817150|gb|EEM63240.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943209|gb|AEA19105.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K S LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEHSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|259046510|ref|ZP_05736911.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259036675|gb|EEW37930.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 211 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT+RE L L G +++EIA++L +++ TV ++ + KL+ +R QA A Sbjct: 145 PHDDLTQRELEVLLLIAQGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAF 204 Query: 230 RFGYI 234 + I Sbjct: 205 KHQLI 209 >gi|303241719|ref|ZP_07328216.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302590720|gb|EFL60471.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K S NLT RE L+L +G ++EIA++L +S TV ++ + KL+ +R Sbjct: 144 LHDKSKSEESNLTAREVEVLELIAEGMINKEIAKRLYISEKTVKNHVSNIFRKLNVSDRT 203 Query: 223 QAIAKAIRFGY 233 QA A + Sbjct: 204 QAAIYAFKHNM 214 >gi|228907170|ref|ZP_04071032.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] gi|228852502|gb|EEM97294.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] Length = 199 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 129 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188 Query: 225 IAKAIRFGY 233 + A R Sbjct: 189 VIYAFRHQL 197 >gi|156744333|ref|YP_001434462.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235661|gb|ABU60444.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 152 ACYQVITDF--LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 QV+ F + + S L+ RE L+L G T++EIA+ L +S TV ++ Sbjct: 137 VAAQVLNAFRQMAAEEDTQSIYSPLSPRELQVLELVAAGRTNKEIAKVLDISNQTVKNHI 196 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL +R QA+ A+R G+I Sbjct: 197 SSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|295696008|ref|YP_003589246.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295411610|gb|ADG06102.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 223 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 2/107 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGD 187 I + + + ++EA +V+ + LT+RE L L + Sbjct: 113 RAAEIAQAIRAAVQGQSVLEAQ-VAAKVMARVRRPDGQNERPLHEQLTDREREVLLLLAE 171 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+++E+A+ L + V TV ++ + KL +R QA+ A + G + Sbjct: 172 GYSNQEVADALHIGVKTVKFHVTNILDKLQVEDRTQAVIYAYKHGLV 218 >gi|157368315|ref|YP_001476304.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157320079|gb|ABV39176.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 248 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 15/189 (7%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + + + D L + + P W + G Sbjct: 52 EWFEFYTENNYQFIDPVLITASRRITPFSWDENIM-IDPGLKLPRIFDMAKNYNVVNGYT 110 Query: 120 FPVRLGFHKNGYVIFTSE-FLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAAR- 172 F + H + + E I +K+ +S Sbjct: 111 FVLHDHNHNLVVLSIMIDKNCDYNIEERIIANQDKLQMLLITTHDKLTAFYKEINSPTYF 170 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++RE + A G + +EIA LG+ + T+ ++G+A KL N AI Sbjct: 171 DKMNNKGIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAI 230 Query: 226 AKAIRFGYI 234 + I Sbjct: 231 RLGVELQLI 239 >gi|326202012|ref|ZP_08191882.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] gi|325987807|gb|EGD48633.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] Length = 216 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L+++ S A NLT RE L+L +G ++EIA+ L +S TV ++ + KLD +R Sbjct: 144 LYEQDKSIANNLTNREVEVLKLIAEGMINKEIAKTLYISEKTVKNHISNIFKKLDVNDRT 203 Query: 223 QAIAKAIRFGY 233 QA A + Sbjct: 204 QAAIYAFKHNI 214 >gi|159900552|ref|YP_001546799.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893591|gb|ABX06671.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 250 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 2/105 (1%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGY 189 V N++++ V+ F +L ++ RE L+L G Sbjct: 134 VDMVRSGNYPINDLVLNTPAVAAAVMDSFRQLTMDTHTEHVYSPMSPREIEVLELVAAGQ 193 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T++EIA +L +S TV ++ S KL +R QA+ A++ G+I Sbjct: 194 TNKEIAARLEISNQTVKNHISSILRKLAVNDRTQAVVFALQRGWI 238 >gi|302388953|ref|YP_003824774.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] gi|302199581|gb|ADL07151.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] Length = 213 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 44/83 (53%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +I ++ L + S A+R LT RE + +G ++ EI+EKLG+S TV ++ S Sbjct: 131 LTRALIAEYNRLSQPISRASRPLTAREKEVMAYIAEGMSNIEISEKLGISEKTVKNHVSS 190 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ ++R Q A++ + Sbjct: 191 ILRKLNLMDRTQVAVYALKNNLV 213 >gi|222432077|gb|ACM50924.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 13/218 (5%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88 ++ + + + + + +Y + ++ + D + + + P Sbjct: 22 NLDHYDGVKFSFMVLNKKNPSEMIIISSYPDEWVNLYKANKYQHIDPVVLASFNKISPFS 81 Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVI 146 W+ L G F + + S + + I Sbjct: 82 WEKSLV-INTRLQLAKIFDLSKKYNIINGYTFVLHDHSDNLAMLSIIVDSSYPDDVDTFI 140 Query: 147 IE----AHGACYQVITDFLELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAE 196 E + L ++ + L ++RE L A G T E+A Sbjct: 141 EEKKDTFQMLLIDAYEKIISLCREMIENKKPLNNKEIFSQRENEILYWASMGKTYLEVAI 200 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+ TV ++G+ KL +N AI + I Sbjct: 201 ILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 238 >gi|23099974|ref|NP_693440.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778205|dbj|BAC14475.1| two-component response regulator involved in degradative enzyme [Oceanobacillus iheyensis HTE831] Length = 230 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE LQL DG ++ +AE L +S TV ++ + K++ +R QA+ AI Sbjct: 163 PLHLLTKRECQVLQLLADGKSNRAVAETLYISEKTVKNHVSNILQKMNVNDRTQAVVSAI 222 Query: 230 RFGYI 234 R G++ Sbjct: 223 RKGWV 227 >gi|228955660|ref|ZP_04117658.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072878|ref|ZP_04206076.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|229082623|ref|ZP_04215086.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|229153573|ref|ZP_04281751.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228630177|gb|EEK86828.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228701055|gb|EEL53578.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|228710221|gb|EEL62197.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|228804029|gb|EEM50650.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++E+A L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEVASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|229181658|ref|ZP_04308983.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] gi|228601854|gb|EEK59350.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K + LT RE LQL G +++E+A L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEVASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|302534781|ref|ZP_07287123.1| two-component system response regulator [Streptomyces sp. C] gi|302443676|gb|EFL15492.1| two-component system response regulator [Streptomyces sp. C] Length = 270 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 181 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKQLFISENTVKN 240 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 241 HVRNILEKLQLHSRMEAVVYAMREKIL 267 >gi|257867775|ref|ZP_05647428.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257874102|ref|ZP_05653755.1| regulatory protein [Enterococcus casseliflavus EC10] gi|257801858|gb|EEV30761.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257808266|gb|EEV37088.1| regulatory protein [Enterococcus casseliflavus EC10] Length = 209 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSAARNLTERET 179 GY++ TS +A I A +V+ L + +LT RE Sbjct: 96 AGAAGYLLKTSTAHEIA--EAIRATQRGERVLEPEVTTKMMDRLTNRTPILHEDLTNREQ 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA+ L +++ TV ++ + KL+ +R QA A + G I Sbjct: 154 EVLLLIAEGKSNQEIADALFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGLI 208 >gi|73662256|ref|YP_301037.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494771|dbj|BAE18092.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 207 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H VI K+ A L++RE+ L G T++EIAE L +S T+ ++ Sbjct: 127 HPQAQHVIETV----SKKPHYANKLSKRESEVLTEMAKGKTNKEIAETLFVSEKTIKTHV 182 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA A++ I Sbjct: 183 SHIFSKLQVTDRTQAAIYAMQNNLI 207 >gi|62249408|gb|AAX77679.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] gi|84620011|gb|ABC59304.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 60/199 (30%), Gaps = 13/199 (6%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + + +Y + ++ + D + + + P W+ Sbjct: 41 PSEMLIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFD 99 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE----AHGACYQVITDFL 161 L G F + + S + + I E + Sbjct: 100 LSKKYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVDTFIEEKKDTFQMLLIDAYEKII 159 Query: 162 ELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L ++ + + L ++RE L A G T E+A LG+ TV ++G+ K Sbjct: 160 SLCREMIESKKQLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKK 219 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +N AI + I Sbjct: 220 LGVLNAKHAIRLGVELQLI 238 >gi|94984662|ref|YP_604026.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554943|gb|ABF44857.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 228 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTERET 179 GY++ + L V H A + + + + + L+ RE Sbjct: 109 AGAAGYLLKNASEDELLGAVRAVAAGESALHPAVARKVLERFSTHQTPTPPEDALSPREL 168 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++A G T++EIA L +S TV +L + KL +R +A+ I+ G+I Sbjct: 169 EVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYGIKRGWI 223 >gi|254422719|ref|ZP_05036437.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190208|gb|EDX85172.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 235 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L+ G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R Sbjct: 171 AYPLTERELEILECIVSGCSNAQIAEKLFVTVGTVKTHVRNILNKLGASDRTQAAVRALR 230 Query: 231 FGYI 234 G I Sbjct: 231 AGLI 234 >gi|253575241|ref|ZP_04852579.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845238|gb|EES73248.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 221 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + K + A LTERE L+L G ++++IA++L + + TV ++ + KL Sbjct: 143 MMNRFRQPKVEAPAHEELTEREMDVLRLLAQGKSNQDIADELIIGIKTVKFHVTNILAKL 202 Query: 217 DAVNRIQAIAKAIRFGY 233 +R QA A + G Sbjct: 203 GVEDRTQAAIYAYKNGL 219 >gi|229547584|ref|ZP_04436309.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256852497|ref|ZP_05557873.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] gi|229307274|gb|EEN73261.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256712351|gb|EEU27383.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] Length = 210 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L KK+ +LT RE L L G +++EIA++L +++ TV ++ + K Sbjct: 131 HKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAK 190 Query: 216 LDAVNRIQAIAKAIRFGY 233 LD +R QA A + G Sbjct: 191 LDVDDRTQAAIYAFQHGL 208 >gi|15672873|ref|NP_267047.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12723822|gb|AAK04989.1|AE006323_4 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406436|gb|ADZ63507.1| two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 209 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLT 175 FP L GY++ TS+ +A+ + A+G V + ++ +L+ Sbjct: 92 VFPA-LAAGAKGYILKTSQAADIASAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLS 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L++ G +++EIA++L +S+ TV ++ + KL+ +R QA AI+ + Sbjct: 151 KRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209 >gi|322382401|ref|ZP_08056304.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153618|gb|EFX45997.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L S + LT+RE L+L +G +++ I E L +S TV ++ S K Sbjct: 153 AHDSALRY---IDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQK 209 Query: 216 LDAVNRIQAIAKAIRFGYI 234 ++ +R QA+ AI+ G++ Sbjct: 210 MEVDDRTQAVIIAIKNGWV 228 >gi|281491392|ref|YP_003353372.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|281375126|gb|ADA64642.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] Length = 209 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLT 175 FP L GY++ TS+ +A+ + A+G V + ++ +L+ Sbjct: 92 VFPA-LAAGAKGYILKTSQAADIASAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLS 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L++ G +++EIA++L +S+ TV ++ + KL+ +R QA AI+ + Sbjct: 151 KRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209 >gi|29377375|ref|NP_816529.1| LuxR family DNA-binding response regulator [Enterococcus faecalis V583] gi|227554359|ref|ZP_03984406.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255970859|ref|ZP_05421445.1| regulatory protein [Enterococcus faecalis T1] gi|255974434|ref|ZP_05425020.1| regulatory protein [Enterococcus faecalis T2] gi|256618304|ref|ZP_05475150.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256761234|ref|ZP_05501814.1| regulatory protein [Enterococcus faecalis T3] gi|256958147|ref|ZP_05562318.1| regulatory protein [Enterococcus faecalis DS5] gi|256960293|ref|ZP_05564464.1| regulatory protein [Enterococcus faecalis Merz96] gi|256962729|ref|ZP_05566900.1| regulatory protein [Enterococcus faecalis HIP11704] gi|257077420|ref|ZP_05571781.1| regulatory protein [Enterococcus faecalis JH1] gi|257080715|ref|ZP_05575076.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083389|ref|ZP_05577750.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257088053|ref|ZP_05582414.1| regulatory protein [Enterococcus faecalis D6] gi|257091132|ref|ZP_05585493.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257417079|ref|ZP_05594073.1| regulatory protein [Enterococcus faecalis AR01/DG] gi|257417793|ref|ZP_05594787.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257420589|ref|ZP_05597579.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294779660|ref|ZP_06745051.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300861047|ref|ZP_07107134.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|29344842|gb|AAO82599.1| DNA-binding response regulator, LuxR family [Enterococcus faecalis V583] gi|227176505|gb|EEI57477.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255961877|gb|EET94353.1| regulatory protein [Enterococcus faecalis T1] gi|255967306|gb|EET97928.1| regulatory protein [Enterococcus faecalis T2] gi|256597831|gb|EEU17007.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256682485|gb|EEU22180.1| regulatory protein [Enterococcus faecalis T3] gi|256948643|gb|EEU65275.1| regulatory protein [Enterococcus faecalis DS5] gi|256950789|gb|EEU67421.1| regulatory protein [Enterococcus faecalis Merz96] gi|256953225|gb|EEU69857.1| regulatory protein [Enterococcus faecalis HIP11704] gi|256985450|gb|EEU72752.1| regulatory protein [Enterococcus faecalis JH1] gi|256988745|gb|EEU76047.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991419|gb|EEU78721.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256996083|gb|EEU83385.1| regulatory protein [Enterococcus faecalis D6] gi|256999944|gb|EEU86464.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257158907|gb|EEU88867.1| regulatory protein [Enterococcus faecalis ARO1/DG] gi|257159621|gb|EEU89581.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257162413|gb|EEU92373.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294453317|gb|EFG21728.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850086|gb|EFK77836.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|323478876|gb|ADX78315.1| response regulator [Enterococcus faecalis 62] gi|327536064|gb|AEA94898.1| DNA-binding response regulator [Enterococcus faecalis OG1RF] Length = 210 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSA-ARNLTERE 178 GY++ TS +A I A +V+ L KK+ +LT RE Sbjct: 96 AGAAGYLLKTSTAHEIA--DAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 154 HEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 208 >gi|218678644|ref|ZP_03526541.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 172 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + P+ + ++ + E I + ++ E + LT+R Sbjct: 56 LFIPLFTPEGRRYCLVLSGERQEPDQGEIADMLLDAMRIFDKLYE-EILTPEMSGRLTQR 114 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 115 EQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 171 >gi|50119067|ref|YP_048234.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49609593|emb|CAG73026.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 242 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 59/196 (30%), Gaps = 13/196 (6%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + + +Y + ++ + D + + + P W+ L Sbjct: 44 MIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFDLSK 102 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEA----HGACYQVITDFLELF 164 G F + + + + I E + + L Sbjct: 103 KYDIINGYTFVLHDHGDNLAMLSIIVDNSYPDDVETFIEERKDIFQMLLIEAYEKIISLC 162 Query: 165 KKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 K+ + L ++RE L A G T E+A LG+ TV ++G+ KL Sbjct: 163 KEMIGNKKQLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 223 LNAKHAIRLGVELQLI 238 >gi|257876663|ref|ZP_05656316.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325571030|ref|ZP_08146602.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257810829|gb|EEV39649.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325156115|gb|EGC68301.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 209 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSAARNLTERET 179 GY++ TS +A I A +V+ L + +LT RE Sbjct: 96 AGAAGYLLKTSTAHEIA--EAIRATQRGERVLEPEVTTKMMDRLTNRTPILHEDLTNREQ 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA+ L +++ TV ++ + KL+ +R QA A + G I Sbjct: 154 EVLLLIAEGKSNQEIADSLFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGLI 208 >gi|229918078|ref|YP_002886724.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229469507|gb|ACQ71279.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 211 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + +LT RE LQL +G +++ IA++L +S+ TV ++ + KLD +R Sbjct: 136 RLRHPEMTLHESLTAREREILQLMAEGKSNQVIADELFISLKTVKTHVSNILTKLDVYDR 195 Query: 222 IQAIAKAIRFGYI 234 QA+ A + + Sbjct: 196 TQAVVYAFQHNLV 208 >gi|309792258|ref|ZP_07686730.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225799|gb|EFO79555.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 229 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 144 EVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E+++ QV++ F ++ + S L+ RE L+L G T++EIA L +S Sbjct: 129 EMVLALPDVAAQVLSAFRQMVIDEDTQSIFSPLSPRELEVLELVAAGRTNKEIALNLDIS 188 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ S KL +R QA+ A+R G+I Sbjct: 189 NQTVKNHVSSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|229094522|ref|ZP_04225591.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] gi|228688906|gb|EEL42736.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] Length = 215 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K ++ LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANALLSQTLPVEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA A++ G + Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215 >gi|229035051|ref|ZP_04188998.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] gi|228728236|gb|EEL79265.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] Length = 215 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K ++ LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANTLLSQTLPVEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|253997049|ref|YP_003049113.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983728|gb|ACT48586.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 243 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-----LELFKKRSSAAR 172 P+ +G G + + + L L+ +I + + K + Sbjct: 121 YLIPIAIGQQSVGLIALSGQNLQLSPHELITLQSISGILGLALKQASSMSAEDKDLTVIE 180 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G ++ E+A KLG+S TV ++ KL+ +R QA KA G Sbjct: 181 HLTPREREVFALLPSGLSNRELATKLGISAGTVKIHVERVLSKLNLRDRTQAAVKAYELG 240 Query: 233 Y 233 Y Sbjct: 241 Y 241 >gi|20808107|ref|NP_623278.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|254479031|ref|ZP_05092387.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516692|gb|AAM24882.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|214035027|gb|EEB75745.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 208 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L+L GY+++EIA+KL LS TV ++ + KL +R QA Sbjct: 143 KELTPREIEILKLLSQGYSNKEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQAAIY 198 >gi|294054035|ref|YP_003547693.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613368|gb|ADE53523.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL G+G +++EIA+ + +S+ TV ++ + KL A +R QA+ A + Sbjct: 144 EELTPRELEVLQLLGEGQSNKEIADVMDISLSTVKIHVTNIRDKLGAADRTQAVVIAFKR 203 Query: 232 GYI 234 G + Sbjct: 204 GIL 206 >gi|329935958|ref|ZP_08285759.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304565|gb|EGG48442.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 254 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 165 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 224 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 225 HVRNILEKLQLHSRMEAVVYAMREKIL 251 >gi|227114479|ref|ZP_03828135.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 242 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 59/199 (29%), Gaps = 13/199 (6%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + + +Y + ++ + D + + + P W+ Sbjct: 41 PSEMIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFD 99 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE----AHGACYQVITDFL 161 L G F + + S + + I E + Sbjct: 100 LSKKYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDIDTFIEEKKDTFQMLLIDAYEKII 159 Query: 162 ELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L ++ + L ++RE L A G T E+A LG+ TV ++G+ K Sbjct: 160 SLCREMIENKKPLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKK 219 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +N AI + I Sbjct: 220 LGVLNAKHAIRLGVELQLI 238 >gi|150390890|ref|YP_001320939.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950752|gb|ABR49280.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 217 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 152 ACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q++ +F + LT+RE L L +G ++EIA L +S TV ++ Sbjct: 131 LASQLVKEFNRRDDHHDKEPREGKLTKREYEVLTLIAEGQNNKEIASNLFISEKTVKNHV 190 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 + K+ +R QA A + Sbjct: 191 SNIFKKIHVNDRTQAAIYAYKHNI 214 >gi|262283887|gb|ACY40751.1| VisN [Rhizobium leguminosarum bv. viciae] Length = 262 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 18/225 (8%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69 +S L L + + + A ++ L + ++ D +++ Sbjct: 54 ASTGRLQSGLRALTDYVGASHYLLARCDL---LQESGLDFIVSSDWPFDLVRDIANDLVR 110 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 L P + + + + + +G + Sbjct: 111 GYARSTELEKCMQVFQP-NFALLPDSAEVPDGAS-----------RQYCSVTFNVGRSRL 158 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + E +L+ E + + V FL + LT+RE CL +G Sbjct: 159 ALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGTKVDRDFELTDRELECLFWIAEGK 217 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 218 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262 >gi|187920713|ref|YP_001889745.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719151|gb|ACD20374.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 333 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 16/227 (7%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R+ ++ RIK F ++ ++ + + D + Sbjct: 102 QDRIEFVRQRIKQLGFDSFSYSATRTSAHHKTMFVLTSYESHSWLTRYFRERYFELDPRV 161 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL------LPFAGIAFPVRLGFHKNGY 131 + LP +W + + + S RL G + +GI + L + Sbjct: 162 ALASPTGLPFLWNTADMRADLPRAQMRSERLGGLIDMLEVTGRKSGILTQMPLPEPELSA 221 Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181 + + + + E ++ AH + T + + + +T E Sbjct: 222 SLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGIAPAQQQRVTLSELQHAV 281 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ G +EIA LGLS H V+ +L + NR+Q I A Sbjct: 282 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328 >gi|315030865|gb|EFT42797.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] Length = 206 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L KK+ +LT RE L L G +++EIA++L +++ TV ++ + K Sbjct: 127 HKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAK 186 Query: 216 LDAVNRIQAIAKAIRFGY 233 LD +R QA A + G Sbjct: 187 LDVDDRTQAAIYAFQHGL 204 >gi|228900120|ref|ZP_04064353.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] gi|228859526|gb|EEN03953.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] Length = 199 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 129 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188 Query: 225 IAKAIRFGY 233 + A R Sbjct: 189 VIYAFRHQL 197 >gi|308177198|ref|YP_003916604.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307744661|emb|CBT75633.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 230 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 46/99 (46%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + ++ + + + + + +A +LT RE L G ++ EIA Sbjct: 130 GDAVIAPSTTRRLLDHMTPMLKKNAAQHDEHLIAAVESLTPREREVFGLIAVGLSNPEIA 189 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EKL LS TV ++G KL+A +R+QA+ A + G + Sbjct: 190 EKLFLSEATVKTHVGHILAKLEARDRVQAVVIAYQTGVV 228 >gi|51893866|ref|YP_076557.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857555|dbj|BAD41713.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 210 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 37/86 (43%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H Q + L K S+ +T RE L+L G +++EI E+L + TV + Sbjct: 125 LHPVAAQRMMQELTAPPKASAGVEEITPRELEVLKLIAQGLSNKEIGERLFIGERTVKTH 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R Q A++ + Sbjct: 185 VSHLLEKLQLQDRTQLAIYALQNKLV 210 >gi|227518222|ref|ZP_03948271.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229548209|ref|ZP_04436934.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|293382160|ref|ZP_06628103.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|293388529|ref|ZP_06633033.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|307268836|ref|ZP_07550203.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307272676|ref|ZP_07553924.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307275104|ref|ZP_07556258.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307278542|ref|ZP_07559614.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307287394|ref|ZP_07567453.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307290831|ref|ZP_07570725.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312900387|ref|ZP_07759697.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312902923|ref|ZP_07762120.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312905744|ref|ZP_07764766.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909060|ref|ZP_07767920.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312952200|ref|ZP_07771078.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|227074318|gb|EEI12281.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229306688|gb|EEN72684.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|291080443|gb|EFE17807.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|291082133|gb|EFE19096.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|306498140|gb|EFM67663.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306501567|gb|EFM70863.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504779|gb|EFM73977.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508222|gb|EFM77338.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306510671|gb|EFM79693.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514840|gb|EFM83388.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310628223|gb|EFQ11506.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310629856|gb|EFQ13139.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310633695|gb|EFQ16978.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311290622|gb|EFQ69178.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311292477|gb|EFQ71033.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315028155|gb|EFT40087.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315032281|gb|EFT44213.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315036239|gb|EFT48171.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145424|gb|EFT89440.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315148783|gb|EFT92799.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151677|gb|EFT95693.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154523|gb|EFT98539.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315156392|gb|EFU00409.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315160117|gb|EFU04134.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315163264|gb|EFU07281.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165932|gb|EFU09949.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169340|gb|EFU13357.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315171806|gb|EFU15823.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315174757|gb|EFU18774.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315576264|gb|EFU88455.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578904|gb|EFU91095.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315582755|gb|EFU94946.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|329573313|gb|EGG54926.1| response regulator protein VraR [Enterococcus faecalis TX1467] Length = 206 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSA-ARNLTERE 178 GY++ TS +A I A +V+ L KK+ +LT RE Sbjct: 92 AGAAGYLLKTSTAHEIA--DAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNRE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 150 HEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 204 >gi|156741340|ref|YP_001431469.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232668|gb|ABU57451.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ----VITDFLELFK----KRSSAARNLT 175 L GY++ + + V G + V+ L ++ LT Sbjct: 106 LRAGVAGYLLKDASRREIIGAVRQVLRGEAFLNPDLVLQTLRRLAHATPTDDATPIEPLT 165 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G T+ EIA +L +S TV ++ KL +R QA +A+ G + Sbjct: 166 PREQQVLRLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGLV 224 >gi|312864942|ref|ZP_07725172.1| response regulator receiver domain protein [Streptococcus downei F0415] gi|311099562|gb|EFQ57776.1| response regulator receiver domain protein [Streptococcus downei F0415] Length = 213 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Q Sbjct: 138 HDQHPDLHDDLTARERDVLALLAKGYDNQTIADELFISLKTVKTHVSNILAKLNVEDRTQ 197 Query: 224 AIAKAIRFGYI 234 A+ A + + Sbjct: 198 AVVYAFQHNLV 208 >gi|218896470|ref|YP_002444881.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543325|gb|ACK95719.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 210 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIRFGY 233 + A R Sbjct: 200 VIYAFRHQL 208 >gi|149182159|ref|ZP_01860641.1| YhcZ [Bacillus sp. SG-1] gi|148850110|gb|EDL64278.1| YhcZ [Bacillus sp. SG-1] Length = 213 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H + + + LT RE L+ G +++EIA L ++ TV + Sbjct: 126 LHPKATNHLLKRVSRKNQPPHQIHQLTNRERDVLKELAKGKSNKEIAASLYITEKTVKTH 185 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + + KL+ +R QA A++ G Sbjct: 186 ISNIFAKLEVSDRTQAALYAVKHGL 210 >gi|219846976|ref|YP_002461409.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541235|gb|ACL22973.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 229 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLG 199 I + +V LE F++ L+ RE L+L G T+ EIA +L Sbjct: 127 INDLVLTSPEVAATVLEAFRQMVGDDDVQTVFSPLSARELEVLELVAAGRTNREIAAQLD 186 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV ++ S KL +R QA+ A+R G+I Sbjct: 187 ISNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|289641016|ref|ZP_06473185.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289509136|gb|EFD30066.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 234 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 40/87 (45%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + + LT+RE L+L G + +IA++L +S +TV Sbjct: 145 MASKLLSEFALMIKKADSRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLFISENTVKN 204 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 205 HIRNILEKLQLHSRMEAVVYAVREKLL 231 >gi|47569107|ref|ZP_00239795.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47554178|gb|EAL12541.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 132 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 62 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 121 Query: 225 IAKAIRFGY 233 + A R Sbjct: 122 VIYAFRHQL 130 >gi|308070694|ref|YP_003872299.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] gi|305859973|gb|ADM71761.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] Length = 233 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + + + A LT+RE L+L G ++++IA++L + + TV ++ + KL Sbjct: 155 MMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNLLAKL 214 Query: 217 DAVNRIQAIAKAIRFGY 233 +R QA A + G Sbjct: 215 GVEDRTQAAIYAYKNGL 231 >gi|152032260|gb|ABS28972.1| acyl-homoserine lactone transcriptional regulator [Burkholderia vietnamiensis] Length = 154 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 13/159 (8%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 NY + D + H S + P+IW++ + ++ Sbjct: 1 NYPQTWVERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEADQHGLR 55 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRS 168 G P G + + + E ++ L L + Sbjct: 56 HGWCMPSVSRTGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVP 114 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 LT RE LQ + G T EI + + + TV Sbjct: 115 EYTVELTVREREALQWSAAGKTYAEIGKIMHVDDRTVKF 153 >gi|323489235|ref|ZP_08094467.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397122|gb|EGA89936.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 211 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 44/80 (55%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+T ++ + +LTERE L L G T++E+A++L ++V TV ++ + Sbjct: 128 EVMTKMMKQMRHERVLHDDLTEREMEILLLLARGLTNQEVADQLFIAVKTVKTHVSNILA 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 188 KLEVHDRTQAVIYAFQHKLI 207 >gi|228911248|ref|ZP_04075053.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] gi|228848424|gb|EEM93273.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] Length = 215 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +K LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IANTLLSQTLPVEEKEEEPFLQVGVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|220929282|ref|YP_002506191.1| LuxR family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999610|gb|ACL76211.1| two component transcriptional regulator, LuxR family [Clostridium cellulolyticum H10] Length = 216 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L+++ S NLT RE L+L +G ++EIA+ L +S TV ++ + KLD +R Sbjct: 144 LYEQDKSIINNLTNREVEVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKLDVNDRT 203 Query: 223 QAIAKAIRFGY 233 QA A + Sbjct: 204 QAAIYAFKHNI 214 >gi|157693950|ref|YP_001488412.1| response regulator DegU [Bacillus pumilus SAFR-032] gi|157682708|gb|ABV63852.1| response regulator DegU [Bacillus pumilus SAFR-032] Length = 229 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 221 Query: 230 RFGYI 234 + G++ Sbjct: 222 KNGWV 226 >gi|271964817|ref|YP_003339013.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507992|gb|ACZ86270.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAARN 173 + L GYV+ ++ V A G + + S Sbjct: 106 SVFAALRAGARGYVLKGADGNDFIAAVRAVARGEAVYGPAVARRIRRFLTTGPESGPFPE 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G ++ EIA +L LS TV +L S KL +R QA+ +A R G Sbjct: 166 LTQREREILDLLASGKSNAEIARRLFLSQKTVKNHLTSIFAKLQVADRTQAVVRARRAGL 225 >gi|158340472|ref|YP_001521466.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310713|gb|ABW32327.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + LT RE L+L G T++EIA+ LS TV ++ + ++L + Sbjct: 142 RAGDAPKLPTDTPLTTRELEVLKLLAKGNTNKEIAKAFNLSEGTVKNHVSNILMRLGLRD 201 Query: 221 RIQAIAKAIRFGY 233 R QA A+ G Sbjct: 202 RTQAAVYAVEHGL 214 >gi|16080602|ref|NP_391429.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|154687664|ref|YP_001422825.1| DegU [Bacillus amyloliquefaciens FZB42] gi|221311500|ref|ZP_03593347.1| DegU [Bacillus subtilis subsp. subtilis str. 168] gi|221315827|ref|ZP_03597632.1| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320742|ref|ZP_03602036.1| DegU [Bacillus subtilis subsp. subtilis str. JH642] gi|221325027|ref|ZP_03606321.1| DegU [Bacillus subtilis subsp. subtilis str. SMY] gi|296330243|ref|ZP_06872724.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676152|ref|YP_003867824.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|308175281|ref|YP_003921986.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|321313096|ref|YP_004205383.1| two-component response regulator [Bacillus subtilis BSn5] gi|118438|sp|P13800|DEGU_BACSU RecName: Full=Transcriptional regulatory protein degU; AltName: Full=Protease production enhancer protein gi|143089|gb|AAA22545.1| iep protein [Bacillus subtilis] gi|143499|gb|AAA22733.1| degU protein (gtg start codon) [Bacillus subtilis] gi|143502|gb|AAA22735.1| protein kinase (put.); putative [Bacillus subtilis] gi|1762330|gb|AAC44938.1| transcriptional regulator of degradation enzymes [Bacillus subtilis subsp. subtilis str. 168] gi|2636075|emb|CAB15566.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|126363001|emb|CAM35818.1| two-component response regulator DegU [Bacillus amyloliquefaciens FZB42] gi|154353515|gb|ABS75594.1| DegU [Bacillus amyloliquefaciens FZB42] gi|206967377|gb|ACI22669.1| two-component response regulator DegU [Bacillus subtilis] gi|219937642|emb|CAJ97429.1| transcriptional regulatory protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152511|gb|EFG93379.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414396|gb|ADM39515.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|307608145|emb|CBI44516.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|320019370|gb|ADV94356.1| two-component response regulator [Bacillus subtilis BSn5] gi|328913615|gb|AEB65211.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens LL3] Length = 229 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 221 Query: 230 RFGYI 234 + G++ Sbjct: 222 KNGWV 226 >gi|224552990|gb|ACN54746.1| PagR [Pantoea agglomerans] Length = 210 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + + D+ + D + + W++ + + ++ + Sbjct: 28 NNNPEWFDVYLERKYQFIDPVIIRGLRSVEDYSWENKVILSEGYNLTRIFNESIQ-YNIY 86 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSA 170 G FP+ + + + +E IE H + L L+ + Sbjct: 87 QGRTFPLHDYLNNLVLLSVIG---LKDSEHDIENHRQKFISFLTNLHQKTLNLYSQHQQK 143 Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G T E++ L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPREREILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGA 203 Query: 230 RFGYI 234 + Sbjct: 204 ELQLL 208 >gi|205372705|ref|ZP_03225516.1| two-component response regulator [Bacillus coahuilensis m4-4] Length = 212 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +K S LT RE L L +G T+ EI E L ++ TV ++ + KL Sbjct: 133 MMSRMRKPSHPHEELTNREMEILLLMAEGKTNSEIGEDLFIAHKTVKTHVSNILSKLGVQ 192 Query: 220 NRIQAIAKAIRFGYI 234 +R QA+ A + + Sbjct: 193 DRTQAVIYAFQHSLV 207 >gi|239828352|ref|YP_002950976.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808645|gb|ACS25710.1| two component transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 225 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ + KL+ +R QA+ AI Sbjct: 158 PLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVVVAI 217 Query: 230 RFGYI 234 + G++ Sbjct: 218 KNGWV 222 >gi|229084537|ref|ZP_04216810.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] gi|228698773|gb|EEL51485.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] Length = 196 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 126 KKEQPLYEDLTEREFEILMLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 185 Query: 225 IAKAIRFGY 233 + A R Sbjct: 186 VIYAFRHQL 194 >gi|229108996|ref|ZP_04238597.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] gi|228674465|gb|EEL29708.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] Length = 196 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 126 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 185 Query: 225 IAKAIRFGY 233 + A R Sbjct: 186 VIYAFRHQL 194 >gi|52082083|ref|YP_080874.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787473|ref|YP_093302.1| DegU [Bacillus licheniformis ATCC 14580] gi|319647951|ref|ZP_08002169.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] gi|52005294|gb|AAU25236.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349975|gb|AAU42609.1| DegU [Bacillus licheniformis ATCC 14580] gi|56310547|emb|CAE82205.1| two-component response regulator [Bacillus licheniformis] gi|106880136|emb|CAJ70739.1| two component response regulator [Bacillus licheniformis] gi|106880142|emb|CAJ70744.1| two component response regulator [Bacillus licheniformis] gi|317390292|gb|EFV71101.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] Length = 229 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 221 Query: 230 RFGYI 234 + G++ Sbjct: 222 KNGWV 226 >gi|228990549|ref|ZP_04150514.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] gi|228996650|ref|ZP_04156289.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|229004298|ref|ZP_04162099.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228757159|gb|EEM06403.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228763282|gb|EEM12190.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|228769075|gb|EEM17673.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] Length = 210 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIRFGY 233 + A R Sbjct: 200 VIYAFRHQL 208 >gi|295836933|ref|ZP_06823866.1| nitrate/nitrite response regulator [Streptomyces sp. SPB74] gi|295826282|gb|EDY45818.2| nitrate/nitrite response regulator [Streptomyces sp. SPB74] Length = 264 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 41/77 (53%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + ++R A LT+RE L+L G + +IA++L +S +TV ++ + KL Sbjct: 185 SMIQRTDERRLVPAPRLTDREMDVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQ 244 Query: 218 AVNRIQAIAKAIRFGYI 234 +R++A+ A+R + Sbjct: 245 LHSRMEAVVYAMREKIL 261 >gi|224476907|ref|YP_002634513.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421514|emb|CAL28328.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 209 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RET L+ G T++EIAE L +S TV ++ KL +R QA A+ Sbjct: 148 KLSNRETEVLKEMAKGKTNKEIAEALYVSEKTVKTHVSHIFSKLQVTDRTQAAIYAMENK 207 Query: 233 YI 234 I Sbjct: 208 LI 209 >gi|209518905|ref|ZP_03267716.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209500628|gb|EEA00673.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 333 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 16/227 (7%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R+ ++ RI+ F ++ + + + D + Sbjct: 102 QDRMEFVRQRIRQLGFDSFSYAATRTSSHHKTIFVLTSYESPAWLTRYFRERYFELDPRV 161 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131 + +P +W + + + S + + +GI + L Sbjct: 162 GLASPTGMPFMWNTADMRADLPRAQLRSERLGELIDMLEAAGRKSGILTRMPLPEPDLSA 221 Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSC 181 + + + + E ++ AH + T + + L++ + + Sbjct: 222 SLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGIEPEQQQRVALSKLQYAV 281 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ +G +EIA LGLS H V+ +L + NR+Q I A Sbjct: 282 LKAVVEGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328 >gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 262 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 18/225 (8%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69 +S L L + + + A ++ L + ++ D +++ Sbjct: 54 ASTGRLQSGLRALTDYVGASHYLLARCDL---LQESGLDFIVSSDWPFDLVRDIANDLVR 110 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 L P + + + + + +G + Sbjct: 111 GYARSTELEKCMQVFQP-NFALLPDSAEVPDGAS-----------RQYCSVTFNVGRSRL 158 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + E +L+ E + + V FL + LT+RE CL +G Sbjct: 159 SLMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGTKVDRDFELTDRELECLFWIAEGK 217 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 218 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262 >gi|295396928|ref|ZP_06807052.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294974862|gb|EFG50565.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 210 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 E+ R +LT RE LQL G +++EIA++L +++ TV ++ + KL Sbjct: 135 AHEVEANRHHLHDDLTTREREVLQLIAAGKSNQEIADELFITLKTVKTHVSNILSKLGVE 194 Query: 220 NRIQAIAKAIRFGYI 234 +R QA A + + Sbjct: 195 DRTQATIYAFQNQLV 209 >gi|222432075|gb|ACM50923.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 13/218 (5%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88 ++ + + + + + +Y + ++ + D + + + P Sbjct: 22 NLDHYDGVKFSFMVLNKKNPSEMIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFS 81 Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVI 146 W+ L G F + + S + + I Sbjct: 82 WEKSLV-INTRLQLAKIFNLSKKYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVDTFI 140 Query: 147 IE----AHGACYQVITDFLELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAE 196 E + L ++ + L ++RE L A G T E+A Sbjct: 141 EEKKDTFQMLLIDAYEKIISLCREMIENKKPLNNKEIFSQRENEILYWASMGKTYLEVAI 200 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+ TV ++G+ KL +N AI + I Sbjct: 201 ILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 238 >gi|126724410|ref|ZP_01740253.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126705574|gb|EBA04664.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 203 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 16/185 (8%) Query: 53 ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 E++++ D ++ D F+ + W + Sbjct: 32 EINSFPQAWVDHYTVMGLAVQDPFMRWVYQNEGTVRWSELDLPDPAGVQQAYI-----EH 86 Query: 113 LPFAGIAFPVRLGFHKNG---YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 G V + IF + + L K Sbjct: 87 NLRYGCLVSVLDALSGAPTRSFGIFARNDREFKTSELAKLQ--------QSLRGAKPGID 138 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTE + L+L +G +EIA +L +S V A L +A + A QA +KA Sbjct: 139 DKPVLTEAQIEALRLLSNGKRFKEIAHELNISESAVKARLRAAMTNIGAKTATQATSKAA 198 Query: 230 RFGYI 234 R G + Sbjct: 199 RLGLL 203 >gi|224552993|gb|ACN54748.1| PagR [Pantoea agglomerans] Length = 210 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 58/182 (31%), Gaps = 4/182 (2%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + + D+ + D + + W+ + + ++ + Sbjct: 28 NNNPEWFDVYLERKYQFIDPVIIRGLRCVEDYSWEDKVILSEGYNLTRIFNESIQ-YNIY 86 Query: 116 AGIAFPVRLGFHKNGYVIFTSE-FLMLANE-VIIEAHGACYQVITDFLELFKKRSSAARN 173 G FP+ + + S + E + + L L+ + Sbjct: 87 QGRTFPLHDYLNNLVLLSVISHKDCDINIENYRPKFITFLANLHQKTLNLYSQHHQKKNV 146 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+ G T E++ L ++ TV ++G+ KL N A+ + Sbjct: 147 FLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGVELQ 206 Query: 233 YI 234 + Sbjct: 207 LL 208 >gi|27468447|ref|NP_765084.1| two-component response regulator-like protein [Staphylococcus epidermidis ATCC 12228] gi|57867331|ref|YP_188953.1| LuxR family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|242243070|ref|ZP_04797515.1| response regulator [Staphylococcus epidermidis W23144] gi|251811190|ref|ZP_04825663.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875769|ref|ZP_06284636.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366174|ref|ZP_06612860.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315994|gb|AAO05128.1|AE016749_74 two-component response regulator-like protein [Staphylococcus epidermidis ATCC 12228] gi|57637989|gb|AAW54777.1| DNA-binding response regulator, LuxR family [Staphylococcus epidermidis RP62A] gi|242233528|gb|EES35840.1| response regulator [Staphylococcus epidermidis W23144] gi|251805318|gb|EES57975.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294794|gb|EFA87321.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319696|gb|EFE60056.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329724867|gb|EGG61370.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU144] gi|329734273|gb|EGG70588.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU045] gi|329737276|gb|EGG73530.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU028] Length = 207 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIA L +S TV ++ KL+ +R QA A+ Sbjct: 146 KLSKREKEVLKEMVKGKTNKEIARALFVSEKTVKTHVSHIFSKLEVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|253690507|ref|YP_003019697.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|34398218|gb|AAQ67211.1| transcriptional regulator [Enterobacteriaceae bacterium A2JM] gi|251757085|gb|ACT15161.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 242 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 13/196 (6%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + + +Y + ++ + D + + + P W+ L Sbjct: 44 MIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFDLSK 102 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE----AHGACYQVITDFLELF 164 G F + + S + + I E + L Sbjct: 103 KYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDNVEKFIEEKKDTFQMLLIDAYEKIISLC 162 Query: 165 KKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ + + L ++RE L A G T E+A LG+ TV ++G+ KL Sbjct: 163 REMIESKKQLNNKEMFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 223 LNAKHAIRLGVELQLI 238 >gi|229099838|ref|ZP_04230762.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] gi|228683584|gb|EEL37538.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] Length = 215 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +I+ L ++ LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IASALISQTLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|228932822|ref|ZP_04095692.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945136|ref|ZP_04107496.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229010843|ref|ZP_04168040.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|229016795|ref|ZP_04173725.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|229023000|ref|ZP_04179517.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|229058174|ref|ZP_04196563.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|229090494|ref|ZP_04221732.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|229096030|ref|ZP_04227005.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|229102142|ref|ZP_04232853.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|229114984|ref|ZP_04244396.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|229132346|ref|ZP_04261200.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|229160490|ref|ZP_04288485.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|229166381|ref|ZP_04294138.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228617123|gb|EEK74191.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228622900|gb|EEK79731.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|228651052|gb|EEL07033.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|228668496|gb|EEL23926.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|228681342|gb|EEL35508.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|228687415|gb|EEL41318.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|228692844|gb|EEL46565.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|228720139|gb|EEL71721.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|228738306|gb|EEL88785.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|228744531|gb|EEL94603.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|228750517|gb|EEM00346.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|228814580|gb|EEM60841.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826872|gb|EEM72636.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 196 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 126 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 185 Query: 225 IAKAIRFGY 233 + A R Sbjct: 186 VIYAFRHQL 194 >gi|326441393|ref|ZP_08216127.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + ++R A LT+RE L+L G + +IA++L +S +TV Sbjct: 161 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 220 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 221 HVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|229069092|ref|ZP_04202384.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] gi|228714037|gb|EEL65920.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] Length = 151 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 81 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 140 Query: 225 IAKAIRFGY 233 + A R Sbjct: 141 VIYAFRHQL 149 >gi|170689229|ref|ZP_02880425.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170666784|gb|EDT17551.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 210 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIRFGY 233 + A R Sbjct: 200 VIYAFRHQL 208 >gi|146275775|ref|YP_001165935.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] gi|145322466|gb|ABP64409.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] Length = 255 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 85/252 (33%), Gaps = 21/252 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S ++ + S Q++ + A A D ++ + N Sbjct: 3 LSVESIDSVRISGPQDVRRAAEALHQIALAAGM---RAAPAHDIADKRTPVDADGNILAR 59 Query: 61 ----SGD---IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EG 110 D P + T + ++ L E Sbjct: 60 DVFGWNDEKVWWRNSRIALDSPLTSACRFESEPFWVNANGFHTRQPNHYLTAIDLTNFET 119 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITD-------FLE 162 + A I PV L F + G V F L + I +G + + Sbjct: 120 RAMTRAAIVVPVHLPFGQIGAVSFNPLDPDLTELDDIFLENGDAFGIYGRTFIASYVHAM 179 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + L++RE CL+ A G T EI+ +G S TV ++ +A++KL+AVNR Sbjct: 180 GSVQALPPGSRLSKREVECLRWAAIGKTDLEISMIMGRSRATVRFHIHNASMKLNAVNRS 239 Query: 223 QAIAKAIRFGYI 234 Q + KA + GYI Sbjct: 240 QTVFKAAQLGYI 251 >gi|269925421|ref|YP_003322044.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789081|gb|ACZ41222.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 224 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V++ F + + LT+RE L+LA G +++ IA++L LS TV +L + Sbjct: 138 IAKKVLSRFTSPSTQPEHPSPVLTDRELDVLRLAAKGESNKAIAQQLHLSPRTVQVHLSN 197 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 K +R +A+ A++ G I Sbjct: 198 IFNKFGVASRTEAVLHALKLGLI 220 >gi|298695117|gb|ADI98339.1| probable response regulator protein [Staphylococcus aureus subsp. aureus ED133] Length = 207 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIAE L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|283471119|emb|CAQ50330.1| two-component response regulator [Staphylococcus aureus subsp. aureus ST398] Length = 207 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIAE L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|269941319|emb|CBI49716.1| response regulator protein [Staphylococcus aureus subsp. aureus TW20] Length = 207 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIAE L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|258423125|ref|ZP_05686019.1| response regulator receiver [Staphylococcus aureus A9635] gi|257846689|gb|EEV70709.1| response regulator receiver [Staphylococcus aureus A9635] Length = 207 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIAE L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|253732505|ref|ZP_04866670.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253723786|gb|EES92515.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 207 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIAE L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|82751502|ref|YP_417243.1| two-component response regulator protein [Staphylococcus aureus RF122] gi|82657033|emb|CAI81470.1| probable two-component response regulator protein [Staphylococcus aureus RF122] Length = 207 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIAE L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|21283518|ref|NP_646606.1| hypothetical protein MW1789 [Staphylococcus aureus subsp. aureus MW2] gi|49484090|ref|YP_041314.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49486665|ref|YP_043886.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650637|ref|YP_186730.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|87161726|ref|YP_494481.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195671|ref|YP_500477.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221952|ref|YP_001332774.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|161510065|ref|YP_001575724.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142169|ref|ZP_03566662.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253735272|ref|ZP_04869437.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257425960|ref|ZP_05602384.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257428625|ref|ZP_05605023.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431262|ref|ZP_05607639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433942|ref|ZP_05610300.1| response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436858|ref|ZP_05612902.1| response regulator [Staphylococcus aureus subsp. aureus M876] gi|258452662|ref|ZP_05700661.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|262050140|ref|ZP_06022994.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30] gi|262052678|ref|ZP_06024870.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3] gi|282904423|ref|ZP_06312311.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282906246|ref|ZP_06314101.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282909165|ref|ZP_06316983.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911471|ref|ZP_06319273.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914643|ref|ZP_06322429.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282917116|ref|ZP_06324874.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282919609|ref|ZP_06327344.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282924179|ref|ZP_06331854.1| two-component system, NarL family, response regulator [Staphylococcus aureus A9765] gi|282924989|ref|ZP_06332655.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|283770932|ref|ZP_06343824.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus H19] gi|283958601|ref|ZP_06376052.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|284024894|ref|ZP_06379292.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|293503715|ref|ZP_06667562.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|293510736|ref|ZP_06669441.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|293537278|ref|ZP_06671958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|294850276|ref|ZP_06791011.1| two-component system [Staphylococcus aureus A9754] gi|295428426|ref|ZP_06821055.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297207436|ref|ZP_06923873.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590607|ref|ZP_06949245.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911520|ref|ZP_07128965.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380550|ref|ZP_07363225.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21204959|dbj|BAB95654.1| MW1789 [Staphylococcus aureus subsp. aureus MW2] gi|49242219|emb|CAG40926.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49245108|emb|CAG43574.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57284823|gb|AAW36917.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus COL] gi|87127700|gb|ABD22214.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203229|gb|ABD31039.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374752|dbj|BAF68012.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|160368874|gb|ABX29845.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726679|gb|EES95408.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257271654|gb|EEV03800.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257275466|gb|EEV06953.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278210|gb|EEV08858.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257282035|gb|EEV12172.1| response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284209|gb|EEV14332.1| response regulator [Staphylococcus aureus subsp. aureus M876] gi|257859637|gb|EEV82486.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|259159427|gb|EEW44479.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3] gi|259161765|gb|EEW46353.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30] gi|282313355|gb|EFB43751.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|282317419|gb|EFB47793.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282319603|gb|EFB49955.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282321824|gb|EFB52149.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282325166|gb|EFB55476.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282327429|gb|EFB57724.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331538|gb|EFB61052.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282592974|gb|EFB97976.1| two-component system, NarL family, response regulator [Staphylococcus aureus A9765] gi|282596041|gb|EFC01005.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283461079|gb|EFC08169.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus H19] gi|283790750|gb|EFC29567.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920123|gb|EFD97191.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291095381|gb|EFE25646.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|291466627|gb|EFF09148.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|294822892|gb|EFG39326.1| two-component system [Staphylococcus aureus A9754] gi|295127826|gb|EFG57463.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887899|gb|EFH26795.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297575493|gb|EFH94209.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887152|gb|EFK82352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333513|gb|ADL23706.1| two-component response regulator receiver protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302751657|gb|ADL65834.1| two-component response regulator receiver protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340879|gb|EFM06804.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437687|gb|ADQ76758.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195759|gb|EFU26146.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315196803|gb|EFU27147.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320141302|gb|EFW33147.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143570|gb|EFW35350.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323438857|gb|EGA96594.1| two-component response regulator protein [Staphylococcus aureus O11] gi|323441701|gb|EGA99346.1| two-component response regulator protein [Staphylococcus aureus O46] gi|329314524|gb|AEB88937.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus T0131] gi|329729501|gb|EGG65903.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21189] gi|329732948|gb|EGG69292.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21193] Length = 207 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIAE L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|15924838|ref|NP_372372.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927422|ref|NP_374955.1| hypothetical protein SA1666 [Staphylococcus aureus subsp. aureus N315] gi|148268320|ref|YP_001247263.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394382|ref|YP_001317057.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980164|ref|YP_001442423.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|253315179|ref|ZP_04838392.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006636|ref|ZP_05145237.2| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793793|ref|ZP_05642772.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|258413730|ref|ZP_05682003.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|258420763|ref|ZP_05683702.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|258438424|ref|ZP_05689708.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443869|ref|ZP_05692208.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|258447324|ref|ZP_05695471.1| response regulator receiver [Staphylococcus aureus A6300] gi|258448193|ref|ZP_05696320.1| response regulator receiver [Staphylococcus aureus A6224] gi|258453374|ref|ZP_05701357.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269203485|ref|YP_003282754.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282895146|ref|ZP_06303365.1| two-component system, NarL family, response regulator [Staphylococcus aureus A8117] gi|282928586|ref|ZP_06336185.1| two-component system, NarL family, response regulator [Staphylococcus aureus A10102] gi|295406155|ref|ZP_06815963.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819] gi|296276020|ref|ZP_06858527.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297244922|ref|ZP_06928799.1| two-component system [Staphylococcus aureus A8796] gi|13701641|dbj|BAB42934.1| SA1666 [Staphylococcus aureus subsp. aureus N315] gi|14247620|dbj|BAB58010.1| two-component response regulator homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147741389|gb|ABQ49687.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946834|gb|ABR52770.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722299|dbj|BAF78716.1| two-component response regulator homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257787765|gb|EEV26105.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|257839517|gb|EEV63988.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|257843367|gb|EEV67777.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|257848468|gb|EEV72459.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851275|gb|EEV75218.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|257853911|gb|EEV76867.1| response regulator receiver [Staphylococcus aureus A6300] gi|257858432|gb|EEV81308.1| response regulator receiver [Staphylococcus aureus A6224] gi|257864466|gb|EEV87211.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262075775|gb|ACY11748.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282589795|gb|EFB94880.1| two-component system, NarL family, response regulator [Staphylococcus aureus A10102] gi|282762490|gb|EFC02631.1| two-component system, NarL family, response regulator [Staphylococcus aureus A8117] gi|285817528|gb|ADC38015.1| Two-component response regulator-like protein [Staphylococcus aureus 04-02981] gi|294969152|gb|EFG45173.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819] gi|297178002|gb|EFH37250.1| two-component system [Staphylococcus aureus A8796] gi|312830220|emb|CBX35062.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130508|gb|EFT86494.1| hypothetical protein CGSSa03_09695 [Staphylococcus aureus subsp. aureus CGS03] gi|329727450|gb|EGG63906.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21172] Length = 207 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIAE L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|260892920|ref|YP_003239017.1| two component transcriptional regulator, LuxR family [Ammonifex degensii KC4] gi|260865061|gb|ACX52167.1| two component transcriptional regulator, LuxR family [Ammonifex degensii KC4] Length = 213 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 18/165 (10%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----M 140 P+ + + ++ A +A V ++ Sbjct: 48 RPVDVVLLDISMPDMGGVEACREIKRLRPSVAVVALTVHDQEEYCLAMLEAGAAGYVLKE 107 Query: 141 LANEVIIEAH------------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + +IEA +++ F KR LT RE L+L G Sbjct: 108 SSADQLIEAIVRAARGEEYLSPRLAGKMVKWFSRAESKRG--LCGLTPREKEILRLLASG 165 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ EIA +L LS TV +L S K+ +R QA A++ G+ Sbjct: 166 LSNREIARRLYLSEKTVKNHLTSIFQKIGVSDRTQAALWAVKHGF 210 >gi|120553107|ref|YP_957458.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120322956|gb|ABM17271.1| response regulator receiver protein [Marinobacter aquaeolei VT8] Length = 128 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 50/101 (49%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 T + + I+ A + + + + L++RE L L +G +++ Sbjct: 26 CITRGWSEVEASRILALRQARMEPDAETCARTPEVAGPDEPLSDREQGVLDLLAEGLSNK 85 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 I+++LG+SV TV ++L + KL A NR+QA+A+A G Sbjct: 86 AISKQLGISVATVKSHLSNIYGKLQAENRMQAVARARELGL 126 >gi|310643909|ref|YP_003948667.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248859|gb|ADO58426.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 216 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + + + A LT+RE L+L G ++++IA++L + + TV ++ + KL Sbjct: 138 MMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNLLAKL 197 Query: 217 DAVNRIQAIAKAIRFGY 233 +R QA A + G Sbjct: 198 GVEDRTQAAIYAYKNGL 214 >gi|52143908|ref|YP_082920.1| response regulator [Bacillus cereus E33L] gi|51977377|gb|AAU18927.1| response regulator [Bacillus cereus E33L] Length = 210 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIRFGY 233 + A R Sbjct: 200 VIYAFRHQL 208 >gi|71279244|ref|YP_268811.1| LuxR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144984|gb|AAZ25457.1| transcriptional regulator, LuxR family [Colwellia psychrerythraea 34H] Length = 269 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 24/242 (9%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-------------LICELHNYDLDSG 62 +L + + + F L+ P + + D Sbjct: 17 DLLLLMDNVVESLGLDGF-LFAYAINGWLPSGEPGEIQRWLSKGIDKKSLKAWLAPFDRA 75 Query: 63 DIPNILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESS--GQLSVRLEGGLLPFAGI 118 + + D +P + I +E E + + + I Sbjct: 76 SRKDSDVNRRFDPIRRFMVQQTIPHQFLLTDIIKENKNEYTLVEKRWINSLIKNNVVNLI 135 Query: 119 AFPVRLGFHKNGYVIFTSEFLM------LANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 + PV+L + + F S+ +++ AH Y I + + Sbjct: 136 SIPVQLPPSEYWSLSFFSKNTRYQLESSDKARLMLFAHQLVYHCIDNLQWREDGMKYSIV 195 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE CL + G T+ EIA+ LGL T+ Y+ + +L+A ++ QA+ KAI FG Sbjct: 196 KLTAREKDCLYWSAQGKTANEIADILGLKTETIRKYIKNVMKRLNARSKTQAVVKAIEFG 255 Query: 233 YI 234 + Sbjct: 256 LL 257 >gi|108805307|ref|YP_645244.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766550|gb|ABG05432.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 229 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 I + KR LT RE L+L G + +IAE L +S Sbjct: 136 AIQLLRRLAREAHESANSPPAKRLPELCEPLTPREIEILRLLARGLKNRQIAEHLVISPG 195 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ KL +R QA +AI G + Sbjct: 196 TVKVHVQHIIAKLGVSDRTQAAVRAIELGIL 226 >gi|295691166|ref|YP_003594859.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433069|gb|ADG12241.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 249 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 14/237 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP----RRQQLICELHNYDLDSGDIP 65 + + + L+ R+ + + A + + + P + L + + Sbjct: 10 RLARVTALAERVAALGREMGLPYVA-ASADISSPEPMLGVDGKPLAETTFEWLDSALRYW 68 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 F+ P + + + I P Sbjct: 69 RDRAFALRAPFILAARYTAEPFFYHQGRFASWRPMPRLETIEVADAAESFGVRSAIIAPA 128 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSSAARNLTER 177 L G V++ + + + E HGA ++++ + + + LT+R Sbjct: 129 YLTGGVIGAVVWAAANSVENVPALYAARADELHGAALRLVSAYRDGQDDDAPPV-RLTKR 187 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E CL+ A G T +IA+ +G++ TV ++ +A +KL R QAI +A GYI Sbjct: 188 EIQCLKWAAAGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAIHRATGLGYI 244 >gi|238917970|ref|YP_002931487.1| two-component system, NarL family, response regulator DegU [Eubacterium eligens ATCC 27750] gi|238873330|gb|ACR73040.1| two-component system, NarL family, response regulator DegU [Eubacterium eligens ATCC 27750] Length = 214 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++ G ++EIA L +S TV ++ + K+ +R QA AI+ Sbjct: 150 ELTRRELEVLKMIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQAAVFAIKNN 209 Query: 233 YI 234 I Sbjct: 210 II 211 >gi|229043280|ref|ZP_04191002.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] gi|229078723|ref|ZP_04211277.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228704596|gb|EEL57028.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228726141|gb|EEL77376.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] Length = 199 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 129 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188 Query: 225 IAKAIRFGY 233 + A R Sbjct: 189 VIYAFRHQL 197 >gi|37223253|gb|AAQ90229.1| LuxR [Aliivibrio fischeri] Length = 218 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 11/200 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196 Query: 186 GDGYTSEEIAEKLGLSVHTV 205 +G +S +I++ LG S V Sbjct: 197 CEGKSSWDISKILGCSEXXV 216 >gi|30019588|ref|NP_831219.1| two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206968465|ref|ZP_03229421.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232967|ref|YP_002366221.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296502111|ref|YP_003663811.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|29895132|gb|AAP08420.1| Two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206737385|gb|EDZ54532.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160924|gb|ACK60916.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296323163|gb|ADH06091.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|326939160|gb|AEA15056.1| two-component response regulator yvqC [Bacillus thuringiensis serovar chinensis CT-43] Length = 210 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIRFGY 233 + A R Sbjct: 200 VIYAFRHQL 208 >gi|148658406|ref|YP_001278611.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570516|gb|ABQ92661.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 246 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 152 ACYQVITDF--LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 QV+ F + + ++ + L+ RE L+L G+T++ IA+ L +S TV ++ Sbjct: 152 VAAQVLNAFRQMAVDEETQNVYSPLSPRELQVLELVAAGHTNKAIAQSLDISNQTVKNHI 211 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL +R QA+ A+R G+I Sbjct: 212 SSILRKLAVNDRTQAVVYAMRRGWI 236 >gi|251795142|ref|YP_003009873.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542768|gb|ACS99786.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 230 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ + + +A +LTERE L+ G +++EIA++L + V TV ++ Sbjct: 146 VAAKMMNRLRKPKQPVQAALHDDLTEREMDVLKRVAQGMSNQEIADELFIGVKTVKFHIT 205 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KLD +R QA A + G Sbjct: 206 NIFNKLDVEDRTQAAIYAHKQGI 228 >gi|297617439|ref|YP_003702598.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145276|gb|ADI02033.1| transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 218 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L + + +++EIA L LS TV +L + KL NR +A+A A + G Sbjct: 150 LSRREEEVLAMLANKLSTQEIAASLYLSESTVKTHLRNIFRKLGVRNRTEAVAAAYQLGL 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|229074728|ref|ZP_04207749.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] gi|228708471|gb|EEL60623.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] Length = 199 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 129 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188 Query: 225 IAKAIRFGY 233 + A R Sbjct: 189 VIYAFRHQL 197 >gi|30261536|ref|NP_843913.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42780637|ref|NP_977884.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47526732|ref|YP_018081.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184365|ref|YP_027617.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481072|ref|YP_035656.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318804|ref|ZP_00391763.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118476998|ref|YP_894149.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163939354|ref|YP_001644238.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165872654|ref|ZP_02217284.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634292|ref|ZP_02392613.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641615|ref|ZP_02399861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170706386|ref|ZP_02896847.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651401|ref|ZP_02934190.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568032|ref|ZP_03020942.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036887|ref|ZP_03104273.1| DNA-binding response regulator [Bacillus cereus W] gi|196047716|ref|ZP_03114919.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206978391|ref|ZP_03239262.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959016|ref|YP_002337564.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095172|ref|YP_002529232.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225863403|ref|YP_002748781.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227815714|ref|YP_002815723.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229599953|ref|YP_002865949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682399|ref|ZP_05146260.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721216|ref|ZP_05183006.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733815|ref|ZP_05191529.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740493|ref|ZP_05198184.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753884|ref|ZP_05205919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758979|ref|ZP_05211006.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118514|ref|ZP_07056253.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053077|ref|YP_003791288.1| response regulator [Bacillus anthracis CI] gi|30255390|gb|AAP25399.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42736557|gb|AAS40492.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47501880|gb|AAT30556.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178292|gb|AAT53668.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332628|gb|AAT63274.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416223|gb|ABK84642.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163861551|gb|ABY42610.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|164711598|gb|EDR17145.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510408|gb|EDR85808.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530180|gb|EDR92906.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128920|gb|EDS97786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082679|gb|EDT67742.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560766|gb|EDV14741.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990509|gb|EDX54491.1| DNA-binding response regulator [Bacillus cereus W] gi|196021466|gb|EDX60170.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206743396|gb|EDZ54832.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065203|gb|ACJ79453.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239230|gb|ACM11940.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225787204|gb|ACO27421.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227006221|gb|ACP15964.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229264361|gb|ACQ45998.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724038|gb|EFI64741.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375246|gb|ADK04150.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324325555|gb|ADY20815.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 210 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIRFGY 233 + A R Sbjct: 200 VIYAFRHQL 208 >gi|319650652|ref|ZP_08004792.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397833|gb|EFV78531.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 161 PLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAI 220 Query: 230 RFGYI 234 + G++ Sbjct: 221 KNGWV 225 >gi|302035554|ref|YP_003795876.1| LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300603618|emb|CBK39949.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 223 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LTERE + L+L DG T++EIA L LS TV ++ + KL +R QA AIR Sbjct: 155 HDLTEREITVLRLVADGKTNKEIANNLDLSEKTVKNHVRNIFHKLQVYDRTQAAILAIRK 214 Query: 232 GYI 234 G I Sbjct: 215 GLI 217 >gi|226355486|ref|YP_002785226.1| response regulator NarL [Deinococcus deserti VCD115] Length = 218 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTERET 179 GY++ + L V H + + + + + +L+ RE Sbjct: 99 AGAAGYLLKNASEDDLLGAVRAVAAGESALHPSVARKVLERFSTHTTPTPPEDDLSPREL 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++A G T++EIA L +S TV +L + KL +R +A+ I+ G+I Sbjct: 159 EVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 213 >gi|228951917|ref|ZP_04114015.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807840|gb|EEM54361.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 206 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 136 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 195 Query: 225 IAKAIRFGY 233 + A R Sbjct: 196 VIYAFRHQL 204 >gi|218902648|ref|YP_002450482.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218535833|gb|ACK88231.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 210 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIRFGY 233 + A R Sbjct: 200 VIYAFRHQL 208 >gi|307151536|ref|YP_003886920.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981764|gb|ADN13645.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 232 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 43/76 (56%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + LE +LTERE LQL DGY++ IA+KL ++V TV ++ + KL A Sbjct: 156 ELLEPESNVRGETYSLTERELEVLQLIVDGYSNAAIADKLFITVGTVKTHVRNILNKLCA 215 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA +A+R G + Sbjct: 216 DDRTQAAVRALRAGLV 231 >gi|293553248|ref|ZP_06673885.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] gi|291602658|gb|EFF32873.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] Length = 210 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA--ARNLTERETS 180 GY++ TS +A+ + G +V T +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIADAIRATQCGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRENE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 156 ILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|229020635|ref|ZP_04177369.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] gi|229026848|ref|ZP_04183176.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228734456|gb|EEL85122.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228740659|gb|EEL90923.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] Length = 215 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L +K + LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 VANALLSQTLPEEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIAAVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA A++ G + Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215 >gi|56421685|ref|YP_149003.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56381527|dbj|BAD77435.1| two-component response regulator (extracellular proteinase response regulator) [Geobacillus kaustophilus HTA426] Length = 224 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S KL+ +R QA+ AI Sbjct: 157 PLHLLTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLNVNDRTQAVVVAI 216 Query: 230 RFGYI 234 + G++ Sbjct: 217 KNGWV 221 >gi|197105485|ref|YP_002130862.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] gi|196478905|gb|ACG78433.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] Length = 255 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 8/204 (3%) Query: 39 NSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI 98 + P + L + F+ P +Q + + Sbjct: 42 PRPMRGPDGRPLAETAFRWLDPDLRYWEDRGFALRAAFIRASRVCAEPFYFQGGRLRSWR 101 Query: 99 ESSGQLSVRLEGG--LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA-----NEVIIEAHG 151 + ++ EG A I P L G V + S + E H Sbjct: 102 TNPALDAIAAEGIETFGVGAAIVAPAYLPGGSIGAVTWASPDADVDTGSVFAARAAELHA 161 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + E + LT RE L+ A G T EI + +S TV ++ Sbjct: 162 LALRFVATYAEATGALVGTSPAHLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHIT 221 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +A+ KL R QA+ +A GY+ Sbjct: 222 NASRKLGVAGRAQAVHRAATLGYL 245 >gi|257869647|ref|ZP_05649300.1| regulatory protein [Enterococcus gallinarum EG2] gi|257803811|gb|EEV32633.1| regulatory protein [Enterococcus gallinarum EG2] Length = 209 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + +LT RE L L +G +++EIA++L +++ TV ++ + KL+ +R Sbjct: 136 RLTNRTPILHDDLTNREKEVLLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLEVEDR 195 Query: 222 IQAIAKAIRFGY 233 QA A + G Sbjct: 196 TQATIYAFKHGL 207 >gi|228938652|ref|ZP_04101257.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228957814|ref|ZP_04119555.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228971533|ref|ZP_04132157.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978144|ref|ZP_04138522.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|229126854|ref|ZP_04255866.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|229144139|ref|ZP_04272554.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|229149739|ref|ZP_04277969.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|229177946|ref|ZP_04305318.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|229189620|ref|ZP_04316635.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228593884|gb|EEK51688.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228605434|gb|EEK62883.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|228633770|gb|EEK90369.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|228639358|gb|EEK95773.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|228656794|gb|EEL12620.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|228781616|gb|EEM29816.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|228788192|gb|EEM36147.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228801896|gb|EEM48772.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228821028|gb|EEM67048.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 206 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 136 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 195 Query: 225 IAKAIRFGY 233 + A R Sbjct: 196 VIYAFRHQL 204 >gi|319650241|ref|ZP_08004387.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] gi|317398072|gb|EFV78764.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] Length = 215 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++T LT+RE L+ G +++EIA L ++ TV ++ + Sbjct: 133 HLLTHLTNKNSTERQPLEELTKRELEVLREIAKGKSNKEIASSLYITEKTVKTHVSNLLS 192 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL+ +R QA A+R G Sbjct: 193 KLELADRTQAALYAVRHGI 211 >gi|296134303|ref|YP_003641550.1| two component transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296032881|gb|ADG83649.1| two component transcriptional regulator, LuxR family [Thermincola potens JR] Length = 214 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++L +G + EIA +L +S TV ++ S K+ +R QA AI+ Sbjct: 154 ELTAREREIIRLIAEGKNNREIAAELFISEKTVKNHISSIFRKIKVHDRTQAALYAIKTN 213 Query: 233 Y 233 Sbjct: 214 L 214 >gi|228984618|ref|ZP_04144793.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775145|gb|EEM23536.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 204 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 134 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193 Query: 225 IAKAIRFGY 233 + A R Sbjct: 194 VIYAFRHQL 202 >gi|228920248|ref|ZP_04083596.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926569|ref|ZP_04089640.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121079|ref|ZP_04250319.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|229138230|ref|ZP_04266826.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|229183733|ref|ZP_04310953.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|229195738|ref|ZP_04322500.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228587744|gb|EEK45800.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228599776|gb|EEK57376.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|228645262|gb|EEL01498.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|228662408|gb|EEL18008.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|228833157|gb|EEM78723.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839447|gb|EEM84740.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 204 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 134 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193 Query: 225 IAKAIRFGY 233 + A R Sbjct: 194 VIYAFRHQL 202 >gi|311896318|dbj|BAJ28726.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 241 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 38/74 (51%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + A LT+RE L+L G + EIA++L +S +TV ++ + KL + Sbjct: 165 RRSDDRELLPAPRLTDRELEVLKLVATGMNNREIAKELFISENTVKNHVRNILEKLQLHS 224 Query: 221 RIQAIAKAIRFGYI 234 R++A+ A+R + Sbjct: 225 RMEAVVYAMREKIL 238 >gi|222151857|ref|YP_002561017.1| two-component response regulator VraR [Macrococcus caseolyticus JCSC5402] gi|222120986|dbj|BAH18321.1| two-component response regulator VraR [Macrococcus caseolyticus JCSC5402] Length = 207 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ +++ LTERE L L GY+++EIA+ +++ TV ++ + Sbjct: 127 EVMMKMRARMNQKAELHDMLTEREKEILLLIAKGYSNQEIADASHITIKTVKTHVSNILS 186 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 187 KLEVQDRTQAVIYAFQHDLI 206 >gi|329851246|ref|ZP_08266003.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] gi|328840092|gb|EGF89664.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] Length = 247 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 72/217 (33%), Gaps = 2/217 (0%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + ++ I F ++ + + + + D L Sbjct: 32 RAIIESLRKVIPFDYFFFSGVDLDNC--HTGANMVLMSDMPEAGIAEYHASGLVRADPLL 89 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + W + EE + V L + F + Sbjct: 90 TLVTVERPDLSWFDVPEEVKARPEVRALVSLLDQHHIPPRVIFSQWNSAGDPYGTAGYAR 149 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + + ++ D E + LT ET+CL+LA G TSEEI + Sbjct: 150 TEPFSADEMAILSWFSRRIHKDLCEPVLNGFNQQIGLTAGETTCLELASRGMTSEEIGAQ 209 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L+ TVN+Y+ T KL A NR QAIA A+R I Sbjct: 210 MDLTTETVNSYMKLITRKLGARNRSQAIADALRLNLI 246 >gi|270308516|ref|YP_003330574.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154408|gb|ACZ62246.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 225 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 40/78 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 D L K S+ LT RE L L +G T+++IA L +S T+ ++ + KL Sbjct: 146 FQDVSMLGKDASNFVTPLTNREKQILTLIANGNTNKQIANSLEISEQTIKNHVSAILRKL 205 Query: 217 DAVNRIQAIAKAIRFGYI 234 +A +R A+ AIR G I Sbjct: 206 NANDRAHAVVVAIRCGLI 223 >gi|15614776|ref|NP_243079.1| two-component response regulator [Bacillus halodurans C-125] gi|10174832|dbj|BAB05932.1| two-component response regulator [Bacillus halodurans C-125] Length = 217 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 40/79 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 V+T + R+LT RE L+ G +++EIA +L +S TV ++ + Sbjct: 133 HVLTRMNGDESEEEKRLRDLTNREKDVLRELAKGQSNKEIASELHISEKTVKTHVSNIFW 192 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KLD +R QA AI++G Sbjct: 193 KLDVHDRTQAALFAIKYGI 211 >gi|269925647|ref|YP_003322270.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789307|gb|ACZ41448.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 217 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 15/128 (11%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-------LFKKRSSAA--- 171 + L ++ E ++ +E + + Y + LE L + +A Sbjct: 89 MSLKDSRSVLESLVGEGVLARSETDSDLYLRAYYPAAETLENRVKPQYLPEAPPAAGQTQ 148 Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ERE L L G+T+ EIA +L ++V TV +++ + KL A NR++A++ Sbjct: 149 NQDLLEPLSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAKNRVEALS 208 Query: 227 KAIRFGYI 234 +A G I Sbjct: 209 RARELGLI 216 >gi|229029217|ref|ZP_04185310.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] gi|228732125|gb|EEL83014.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] Length = 204 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 40/69 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 134 KKEQPLHEDLTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193 Query: 225 IAKAIRFGY 233 + A R Sbjct: 194 VIYAFRHQL 202 >gi|88798765|ref|ZP_01114348.1| two-component system regulatory protein [Reinekea sp. MED297] gi|88778528|gb|EAR09720.1| two-component system regulatory protein [Reinekea sp. MED297] Length = 224 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L+L GY+++EI+ + S T+ ++ + KL +R +A+ KA Sbjct: 159 PVQDPLTQREIEILRLMAGGYSNKEISRAIFKSEGTIKNHVSNILAKLGVRDRTRAVLKA 218 Query: 229 IRFGYI 234 + G I Sbjct: 219 LELGVI 224 >gi|172056637|ref|YP_001813097.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989158|gb|ACB60080.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 209 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K S +LTERE LQL G ++EIA++L +S+ TV ++ + KLD V+R Sbjct: 136 RLRKPTSHLHDDLTEREQEVLQLMARGMANQEIADELFISLKTVKTHVSNILSKLDVVDR 195 Query: 222 IQAIAKAIRFGYI 234 QA+ A + + Sbjct: 196 TQAVVYAFKHNIV 208 >gi|256396281|ref|YP_003117845.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362507|gb|ACU76004.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 262 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 78/252 (30%), Gaps = 18/252 (7%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIK-----ARNFALYTINSALDFPRRQQLICELH 55 MS + L+ + + + +L+ L ++++ + A + + + Sbjct: 1 MSTSELSRSELAKILDLAVFLVETADQVEPMQSMRSHLAEHFSVEPGAIVLSRDDVWAQT 60 Query: 56 NYDLDSGDIPNILIETYGDDFLFH-FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + + H + I+ + + S + + + Sbjct: 61 GCSEAECRHDGVWPLLDRHPLVTHYARTRDERILAPRRTVRSDVAWSPRWDDLVREAIGC 120 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITD-----FLELFKKR 167 ++ PV + + + + ++ + + Sbjct: 121 ETYLSMPVPAPAGTSQLYLLGTSHRNASWHHSLLATLAPLASAAVKRSISSCLAAARQDS 180 Query: 168 SSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 S LT RE L+L T++ IA +L S TV+ +L + KL +R+ Sbjct: 181 GSPILEADTTILTRRERHVLELLAQSLTADAIAHRLKCSKRTVHKHLQNIYRKLGTADRL 240 Query: 223 QAIAKAIRFGYI 234 Q + A + G + Sbjct: 241 QTVLAAQKLGLV 252 >gi|295401191|ref|ZP_06811164.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312109465|ref|YP_003987781.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294976784|gb|EFG52389.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311214566|gb|ADP73170.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 226 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ + KL+ +R QA+ AI Sbjct: 159 PLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVIVAI 218 Query: 230 RFGYI 234 + G++ Sbjct: 219 KNGWV 223 >gi|138896712|ref|YP_001127165.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249414|ref|ZP_03148112.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134268225|gb|ABO68420.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211171|gb|EDY05932.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 225 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S KL+ +R QA+ AI Sbjct: 158 PLHLLTRRECEVLQLLADGKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVVVAI 217 Query: 230 RFGYI 234 + G++ Sbjct: 218 KNGWV 222 >gi|116511719|ref|YP_808935.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624447|ref|YP_001032930.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|12483697|gb|AAG53723.1|AF172650_3 RrD [Lactococcus lactis subsp. cremoris MG1363] gi|116107373|gb|ABJ72513.1| DNA-binding response regulator (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|124493255|emb|CAL98222.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|300071234|gb|ADJ60634.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris NZ9000] Length = 209 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLT 175 FP L GY++ TS+ +A + A+G V + ++ +L+ Sbjct: 92 VFPA-LAAGAKGYILKTSQAAEIAMAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLS 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L++ G +++EIA++L +S+ TV ++ + KL+ +R QA AI+ + Sbjct: 151 KRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209 >gi|315271266|gb|ACO45472.2| putative response regulator, NarL [Deinococcus deserti VCD115] Length = 231 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTERET 179 GY++ + L V H + + + + + +L+ RE Sbjct: 112 AGAAGYLLKNASEDDLLGAVRAVAAGESALHPSVARKVLERFSTHTTPTPPEDDLSPREL 171 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++A G T++EIA L +S TV +L + KL +R +A+ I+ G+I Sbjct: 172 EVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 226 >gi|229118901|ref|ZP_04248248.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] gi|228664557|gb|EEL20052.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] Length = 215 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +I+ L ++ LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IASTLISQTLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|229172177|ref|ZP_04299742.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] gi|228611520|gb|EEK68777.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] Length = 207 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 137 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 196 Query: 225 IAKAIRFGY 233 + A R Sbjct: 197 VIYAFRHQL 205 >gi|320162421|ref|YP_004175646.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] gi|319996275|dbj|BAJ65046.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] Length = 455 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE L+L G +++EIA+ L +S +TV +L + K+ V+R +A A Sbjct: 4 PNNEPLSEREIEILRLVATGASNKEIAQALSISPNTVKVHLRNIFAKIGVVSRTEATLYA 63 Query: 229 IRFGY 233 IR G Sbjct: 64 IRNGI 68 >gi|323704464|ref|ZP_08116042.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535926|gb|EGB25699.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] Length = 210 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 140 MLANEVIIEAHGACY----QVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEE 193 ++ +I+A + + + +++ ++LT+RE L L +GY+++E Sbjct: 105 DADSDELIKAIRIISNGGVYIHPSLIREIESLEKNECKKDLTDREFEILNLIAEGYSNKE 164 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 IA+KL LS TV ++ + KLD +R QA Sbjct: 165 IADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIY 198 >gi|257893584|ref|ZP_05673237.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260560505|ref|ZP_05832679.1| regulatory protein [Enterococcus faecium C68] gi|261209022|ref|ZP_05923427.1| regulatory protein [Enterococcus faecium TC 6] gi|289565166|ref|ZP_06445618.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|293563601|ref|ZP_06678047.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|293569319|ref|ZP_06680617.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|294615290|ref|ZP_06695166.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|294619055|ref|ZP_06698550.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|314939788|ref|ZP_07847008.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314942017|ref|ZP_07848877.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314950011|ref|ZP_07853304.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314953533|ref|ZP_07856445.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992148|ref|ZP_07857595.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314995132|ref|ZP_07860248.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257829963|gb|EEV56570.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260073507|gb|EEW61835.1| regulatory protein [Enterococcus faecium C68] gi|260077061|gb|EEW64783.1| regulatory protein [Enterococcus faecium TC 6] gi|289162987|gb|EFD10835.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|291588025|gb|EFF19875.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|291591848|gb|EFF23481.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|291594716|gb|EFF26098.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|291604451|gb|EFF33939.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|313590623|gb|EFR69468.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313593289|gb|EFR72134.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594456|gb|EFR73301.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313599194|gb|EFR78039.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640928|gb|EFS05508.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313643658|gb|EFS08238.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 210 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSA--ARNLTERE 178 GY++ TS +A I A +V+ +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIA--DAIRATQRGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 154 NEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 211 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKITPALLGRSAVKKEKENPFSMLTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNILAKLEVDDRTQAALYAVKHG 209 >gi|190349640|gb|ACE75883.1| quorum sensing response regulator [Serratia plymuthica] Length = 248 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 52/189 (27%), Gaps = 15/189 (7%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + + D L + + P W + G Sbjct: 52 EWFKFYTENNYQFIDPVLITASRRITPFSWDENLM-IDPGLKLPRIFDMAKNYNIVNGYT 110 Query: 120 FPVRLGFHKNGYVIFTSEF--LMLANEVIIE----AHGACYQVITDFLELFKKRSSA--- 170 F H + + I EL+K+ +S Sbjct: 111 FVPHDHNHNLVVLSIMIDKHCDDNIEGEIAANQDKLQMLLITTHDKTTELYKEINSPNYF 170 Query: 171 -----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++RE + A G + +EIA LG+ + T+ ++G+A KL N AI Sbjct: 171 DKMNNKEIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAI 230 Query: 226 AKAIRFGYI 234 + I Sbjct: 231 RLGVELQLI 239 >gi|24306039|gb|AAN52499.1| SpnR [Serratia marcescens] Length = 247 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 60/235 (25%), Gaps = 21/235 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + L + + +A ++ + + + Y + ++ D Sbjct: 13 ETLREYIDRKLSSFGRLEYAYTVVSK-----KNPSDVLIVSTYSDEWVELYRTNNFQLTD 67 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + P W + L G F + + + Sbjct: 68 PVILTAFRRTSPFAWDENITLMSDLKFTK-IFSLAKHYNIVNGFTFVLHDHMNNLTLLSV 126 Query: 135 T---SEFLMLANEVIIEAHGACYQVIT------------DFLELFKKRSSAARNLTERET 179 +E L + E +I T RE Sbjct: 127 IIANNEQGELEARLTFERGAIQILLIDINEQMYCFAGTSSSGRQRHHMDRVKPIFTPREN 186 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + G T +IA G+S+ V ++G+ KL N QAI + I Sbjct: 187 EVLYWSSMGKTYGDIAAIAGISISMVKFHMGNIVSKLGVSNARQAIRLGVELELI 241 >gi|8217387|emb|CAB92554.1| SmaR protein [Serratia sp. ATCC 39006] Length = 247 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 15/190 (7%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 ++ D + D L + P +W + G Sbjct: 51 MEWFDFYTKNNLQFIDPVLITASCCFTPFLWDENIM-ISSGLKMPKIFNMAKNYDVINGY 109 Query: 119 AFPVRLGFHKNGYVIFTSEFL-MLANEVII-----EAHGACYQVITDFLELFKKRSSAA- 171 F + H + + E II + + L+++ + Sbjct: 110 TFVLHDHNHNLVVLSIIMDKSCDDDIEKIIVDKKNDLQMLLLTTHEKLITLYQEINDTHQ 169 Query: 172 -------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L++RE L A G + +EIA LG+ + TV ++G+A KL N A Sbjct: 170 FNKKNQKEILSKRENEILYWASMGKSYQEIALILGIKLTTVKYHVGNAVKKLGVTNAKHA 229 Query: 225 IAKAIRFGYI 234 I + I Sbjct: 230 IRLGVELKLI 239 >gi|269925915|ref|YP_003322538.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789575|gb|ACZ41716.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 226 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +V+ F +L + + LT RE L G +++EIA ++ +S TV + Sbjct: 135 FVASRVLKQFRDLAALEDEENLFTPLTSREVEILDCIARGMSNKEIARQMSISDQTVKNH 194 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL +R QA+ A++ G+I Sbjct: 195 ITSILRKLAVNDRTQAVIYALKRGWI 220 >gi|209528219|ref|ZP_03276686.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209491341|gb|EDZ91729.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 236 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIAEKL ++V TV ++ S KL A +R QA +A+R G Sbjct: 174 PLTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233 Query: 233 YI 234 +I Sbjct: 234 WI 235 >gi|73749035|ref|YP_308274.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669801|ref|YP_001214619.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|73660751|emb|CAI83358.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270749|gb|ABQ17741.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 225 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 40/78 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 D L K SS LT RE L L +G T+++IA L +S T+ ++ + KL Sbjct: 146 FQDVSMLGKDASSFVAPLTNREKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKL 205 Query: 217 DAVNRIQAIAKAIRFGYI 234 +A +R A+ AIR G I Sbjct: 206 NANDRAHAVVVAIRCGLI 223 >gi|145860182|dbj|BAF57040.1| DNA-binding response regulator [Streptococcus bovis] Length = 214 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + A + + A + ++ K+ +LT RE L+ Sbjct: 99 AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDKQPELHEDLTARERDILR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|228914112|ref|ZP_04077732.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229155107|ref|ZP_04283220.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228628392|gb|EEK85106.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228845565|gb|EEM90596.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 204 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 134 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193 Query: 225 IAKAIRFGY 233 + A R Sbjct: 194 VIYAFRHQL 202 >gi|15806010|ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458715|gb|AAF10563.1|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 239 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTERET 179 GY++ + L V H + + + + + + +L+ RE Sbjct: 120 AGAAGYLLKNASEDDLLGAVRAVAAGESALHPSIARKVLERFSVASTPTPPEDDLSPREL 179 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++A G T++EIA L +S TV +L + KL +R +A+ I+ G+I Sbjct: 180 EVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 234 >gi|226314987|ref|YP_002774883.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097937|dbj|BAH46379.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE LQL +G ++ I E L +S TV ++ S KL+ +R QA+ +I+ Sbjct: 171 ESLTRREREVLQLMAEGKSNRAIGEFLFISEKTVKNHVSSILQKLNVQDRTQAVVISIKN 230 Query: 232 GYI 234 G++ Sbjct: 231 GWV 233 >gi|171778156|ref|ZP_02919413.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283138|gb|EDT48562.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 214 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + A + + A + ++ ++ +LT RE L+ Sbjct: 99 AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDQKPELHEDLTARERDILR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|111220761|ref|YP_711555.1| putative protein-glutamate methylesterase [Frankia alni ACN14a] gi|111148293|emb|CAJ59965.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a] Length = 237 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT+RE L+L G + +IA++L +S +TV ++ + KL +R++ Sbjct: 164 DDRPQLPTPRLTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRME 223 Query: 224 AIAKAIRFGYI 234 A+ A+R + Sbjct: 224 AVVYAVREKLL 234 >gi|257885240|ref|ZP_05664893.1| regulatory protein [Enterococcus faecium 1,231,501] gi|257821092|gb|EEV48226.1| regulatory protein [Enterococcus faecium 1,231,501] Length = 210 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSA--ARNLTERE 178 GY++ TS +A I A +V+ +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIA--DAIRATQRGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 154 NEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|73662218|ref|YP_300999.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|88952438|sp|Q49YS9|VRAR_STAS1 RecName: Full=Response regulator protein vraR gi|72494733|dbj|BAE18054.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 209 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 41/81 (50%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +V+ K+R+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 128 AEVLVKMRNRMKQRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNIL 187 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 188 SKLEVQDRTQAVIYAFQHNLI 208 >gi|289642814|ref|ZP_06474951.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507383|gb|EFD28345.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 233 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 157 ITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 R S A +LT RE L+L +G + EIA KL +S +TV ++ + Sbjct: 151 FAALARGSDDRPSRVPAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILD 210 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL +R++A+ A+R G Sbjct: 211 KLQLHSRMEAVMYAVRQGL 229 >gi|294501833|ref|YP_003565533.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|295707182|ref|YP_003600257.1| two-component response regulator DegU [Bacillus megaterium DSM 319] gi|126540400|emb|CAL44587.1| DegU protein [Bacillus megaterium DSM 319] gi|294351770|gb|ADE72099.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|294804841|gb|ADF41907.1| two-component response regulator DegU [Bacillus megaterium DSM 319] Length = 227 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 160 PLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAI 219 Query: 230 RFGYI 234 + G++ Sbjct: 220 KNGWV 224 >gi|159900171|ref|YP_001546418.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893210|gb|ABX06290.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 221 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 38/86 (44%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H + + A LTERE L+L G+++ EIA+ L +S TV + Sbjct: 127 LHPEVAAKLMQEFSAPRNNDPDAEALTEREMDVLRLIARGHSNREIADSLIISEKTVKTH 186 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL +R QA A+R + Sbjct: 187 VSNILSKLHLADRTQAAIYALRQRLV 212 >gi|257899016|ref|ZP_05678669.1| regulatory protein [Enterococcus faecium Com15] gi|257836928|gb|EEV62002.1| regulatory protein [Enterococcus faecium Com15] Length = 210 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSA--ARNLTERE 178 GY++ TS +A I A +V+ +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIA--DAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHEELTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 154 NEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|169827260|ref|YP_001697418.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168991748|gb|ACA39288.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 204 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 36/66 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT+RE L L G ++EIA++L +++ TV ++ + KL+ +R QA+ Sbjct: 137 TPLYEQLTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVY 196 Query: 228 AIRFGY 233 A + G Sbjct: 197 AFQNGL 202 >gi|315649433|ref|ZP_07902521.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315275209|gb|EFU38579.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 214 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERET 179 Y++ TS +A+ + A G + + + + A +LT+RE Sbjct: 99 AGAFSYLLKTSRASEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREM 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++++IA+ L + + TV ++ + KL +R QA A + G Sbjct: 159 EVLRLVAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212 >gi|69248021|ref|ZP_00604584.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227550521|ref|ZP_03980570.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257880197|ref|ZP_05659850.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257882998|ref|ZP_05662651.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257888548|ref|ZP_05668201.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257891419|ref|ZP_05671072.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257897077|ref|ZP_05676730.1| regulatory protein [Enterococcus faecium Com12] gi|258614385|ref|ZP_05712155.1| LuxR family DNA-binding response regulator [Enterococcus faecium DO] gi|293377300|ref|ZP_06623504.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293572485|ref|ZP_06683464.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|294622136|ref|ZP_06701212.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|68194589|gb|EAN09079.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227180422|gb|EEI61394.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257814425|gb|EEV43183.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257818656|gb|EEV45984.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257824602|gb|EEV51534.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257827779|gb|EEV54405.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257833642|gb|EEV60063.1| regulatory protein [Enterococcus faecium Com12] gi|291598337|gb|EFF29424.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|291607402|gb|EFF36745.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|292643992|gb|EFF62098.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 210 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSA--ARNLTERE 178 GY++ TS +A I A +V+ +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIA--DAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHEELTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 154 NEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|269837643|ref|YP_003319871.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786906|gb|ACZ39049.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 234 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++ + S LT RE L G +++EIA L +S TV ++ S KL Sbjct: 145 FRELAQIDEVSSGVFSPLTPREVEILDCVARGNSNKEIARLLNISDQTVKNHITSILRKL 204 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+ A+R G+I Sbjct: 205 AVNDRTQAVIYALRHGWI 222 >gi|119715674|ref|YP_922639.1| response regulator receiver [Nocardioides sp. JS614] gi|119536335|gb|ABL80952.1| response regulator receiver [Nocardioides sp. JS614] Length = 213 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + ++ LTERE L+L G + EIA++L +S +TV ++ + KL + Sbjct: 137 MSRPERDHVPGLRLTERELEVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHS 196 Query: 221 RIQAIAKAIRFGYI 234 R++A+ A++ + Sbjct: 197 RMEAVMYAVKEKLL 210 >gi|319892883|ref|YP_004149758.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] gi|317162579|gb|ADV06122.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] Length = 208 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H QV+ + + L++RET L+ G T++EIAE L +S T+ ++ Sbjct: 128 HKDAQQVMDTVIT----KPHMLNKLSKRETEVLKEMAKGKTNKEIAETLFVSEKTIKTHV 183 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA A+ I Sbjct: 184 SHIFSKLEVTDRTQAAIYAMENHLI 208 >gi|283783120|ref|YP_003373874.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|283441895|gb|ADB14361.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] Length = 261 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA LT+RE L G +++EIA+KL +S+ TV ++ K+ A +R+QA+ Sbjct: 193 NSAITELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVF 252 Query: 228 AIRFGYI 234 A G + Sbjct: 253 AYENGLV 259 >gi|312199837|ref|YP_004019898.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231173|gb|ADP84028.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 237 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT+RE L+L G + +IA++L +S +TV ++ + KL +R++ Sbjct: 164 DDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRME 223 Query: 224 AIAKAIRFGYI 234 A+ A+R + Sbjct: 224 AVVYAVREKLL 234 >gi|261409282|ref|YP_003245523.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329924974|ref|ZP_08279920.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|261285745|gb|ACX67716.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328940263|gb|EGG36593.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 214 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERET 179 Y++ TS +A+ + A G + + + + A +LT+RE Sbjct: 99 AGAFSYLLKTSRASEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREM 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++++IA+ L + + TV ++ + KL +R QA A + G Sbjct: 159 EVLRLLAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212 >gi|218516149|ref|ZP_03512989.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 122 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 55/119 (46%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 AG+A P + F E L + E + + + + SA L+ Sbjct: 3 AGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILHALDAYNIVRRNEESAHNALS 62 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 63 ARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 121 >gi|332707622|ref|ZP_08427652.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332353630|gb|EGJ33140.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 216 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G +V + LT RE L+L G ++ EIA+ L +S TV ++ Sbjct: 129 GIGRKVAAQMRDPTPSPPPGWDELTPREQEILRLIATGASNREIAQTLYISEKTVKNHVT 188 Query: 211 SATVKLDAVNRIQAIAKA 228 +L+ +R QA A Sbjct: 189 HILSRLNVRDRTQAAILA 206 >gi|328555254|gb|AEB25746.1| two-component response regulator [Bacillus amyloliquefaciens TA208] Length = 229 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 221 Query: 230 RFGY 233 + G+ Sbjct: 222 KNGW 225 >gi|160882054|ref|YP_001561022.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430720|gb|ABX44283.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 213 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + SS LT RE L+L +G ++EIA +L +S TV ++ + K+ +R Sbjct: 138 RMQSPSSSNTEILTRREIDVLKLLAEGLFNKEIAYRLSISEKTVKNHVSNIFKKISVSDR 197 Query: 222 IQAIAKAIRFGYI 234 QA AI+ ++ Sbjct: 198 TQAAVYAIKNNFV 210 >gi|323699571|ref|ZP_08111483.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. ND132] gi|323459503|gb|EGB15368.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans ND132] Length = 226 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT RE +++ +G T++ +AE+L +S TV + + KL + ++ Sbjct: 149 ADGQDDPYATLTPREQEVMRMLAEGLTAKAVAEQLFISPKTVENHRTNLMKKLGLKSSVE 208 Query: 224 AIAKAIRFGYI 234 + A R G I Sbjct: 209 LVRYAARLGLI 219 >gi|317130322|ref|YP_004096604.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475270|gb|ADU31873.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 232 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F E+ +R LT RE LQL DG ++ I E L +S TV ++ + K+ Sbjct: 157 FREVEFRR--PLHLLTRRECEVLQLMTDGKSNRAIGEALYISEKTVKNHVSNILQKMGMN 214 Query: 220 NRIQAIAKAIRFGYI 234 +R QA+ AI+ G++ Sbjct: 215 DRTQAVVDAIKNGWV 229 >gi|27762474|gb|AAO23018.1| putative regulatory protein MdlX [Pseudomonas putida] Length = 233 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 12/211 (5%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + L + + A A + + + + + N + + D Sbjct: 31 AAILQAVAAFLDAEFVASFVWDKSEG----RSIDPLAFNMESQFIEAYQKHFYQ-VDLVT 85 Query: 78 FHFNSGLLPIIWQSIQEETVIES--SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 P + + + G+ G G + Sbjct: 86 PIMREVRAP---ARVDCHVPRSAMLKSEFYNDFLQPADMEHGLNVFFFDGDRDIGDLRVW 142 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 E + Q + F + ++ L+ RE +L G + +E+A Sbjct: 143 RSKGSKPFSEREERLLSTLQPYVQ--KAFSPAPTLSQRLSLREAEVAELVAQGASDKEVA 200 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L ++ TV +L +A KL+ NR Q Sbjct: 201 RRLDIAFSTVRTHLKNAMAKLECQNRTQLAR 231 >gi|304317230|ref|YP_003852375.1| LuxR family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778732|gb|ADL69291.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 210 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 10/96 (10%) Query: 140 MLANEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 ++ +I+A ++++ L + LT+RE L L +GY++ Sbjct: 105 DADSDELIKAIRTISNGGVYIHPSLVSEIENLDTDE--CKKELTDREMQILSLIAEGYSN 162 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +EIA+KL LS TV ++ + KLD +R QA Sbjct: 163 KEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIY 198 >gi|229105997|ref|ZP_04236618.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] gi|228677392|gb|EEL31648.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] Length = 215 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +I+ L ++ LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IASTLISQTLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215 >gi|222153503|ref|YP_002562680.1| response regulator protein [Streptococcus uberis 0140J] gi|222114316|emb|CAR42990.1| response regulator protein [Streptococcus uberis 0140J] Length = 213 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV GY++ TS + A + + + A + ++ ++ + LT R Sbjct: 93 YPVID-AGAKGYMLKTSSAAEILNAIQKVAKGQLAIETEVDKKIKAHDRKPNLHDELTAR 151 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 152 EYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208 >gi|298253881|ref|ZP_06977468.1| response regulator of two-component system [Gardnerella vaginalis 5-1] gi|297532024|gb|EFH70999.1| response regulator of two-component system [Gardnerella vaginalis 5-1] Length = 257 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA LT+RE L G +++EIA+KL +S+ TV ++ K+ A +R+QA+ Sbjct: 189 NSAITELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVF 248 Query: 228 AIRFGYI 234 A G + Sbjct: 249 AYENGLV 255 >gi|291486102|dbj|BAI87177.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 229 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAI 221 Query: 230 RFGYI 234 + G++ Sbjct: 222 KNGWV 226 >gi|86739478|ref|YP_479878.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566340|gb|ABD10149.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 237 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT+RE L+L G + +IA++L +S +TV ++ + KL +R++ Sbjct: 164 DDRPQLPTPRLTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRME 223 Query: 224 AIAKAIRFGYI 234 A+ A+R + Sbjct: 224 AVVYAVREKLL 234 >gi|311070055|ref|YP_003974978.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870572|gb|ADP34047.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 229 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVENHVSNILQKMNVNDRTQAVVVAI 221 Query: 230 RFGYI 234 + G++ Sbjct: 222 KNGWV 226 >gi|51893278|ref|YP_075969.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856967|dbj|BAD41125.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 197 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G T+ EIA +L +S TV + + KL +R + + AIR G Sbjct: 134 PLTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTELVRYAIRQG 193 Query: 233 YI 234 + Sbjct: 194 LV 195 >gi|315641236|ref|ZP_07896313.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315483003|gb|EFU73522.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 209 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQL +G +++EIA++L +++ TV ++ + KL+ +R QA A + Sbjct: 145 HDELTNREKEVLQLISNGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQAAIYAFK 204 Query: 231 FGYI 234 GYI Sbjct: 205 HGYI 208 >gi|117928967|ref|YP_873518.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649430|gb|ABK53532.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 303 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + A LTERE L+L G + +IA++L +S +TV ++ + KL +R Sbjct: 228 RGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQLFISENTVKNHVRNILEKLQLHSR 287 Query: 222 IQAIAKAIRFGYI 234 ++A+ A+R + Sbjct: 288 MEAVVYAVREKLL 300 >gi|317122051|ref|YP_004102054.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592031|gb|ADU51327.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 218 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +V+ ++ + LT RE LQL +G ++ EI ++L +S TV Sbjct: 130 LSARVLNLGTRRRERWTPLGGGIPEPLTRREFEVLQLVAEGVSNREIGQRLFISEKTVKN 189 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S KL +R QA+ AIR G++ Sbjct: 190 HITSIFRKLGVADRTQAVIHAIREGWV 216 >gi|188585286|ref|YP_001916831.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349973|gb|ACB84243.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 215 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQL GYT++EIAEKL +S+ TV ++ KL R + + A+R Sbjct: 152 LSDREKEVLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRYAMRNNI 211 Query: 234 I 234 I Sbjct: 212 I 212 >gi|315654640|ref|ZP_07907546.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] gi|315491104|gb|EFU80723.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] Length = 254 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 39/63 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RET L L G T++EIA +L +S+ TV ++G+ K+ A +R+QA+ A Sbjct: 190 DSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFAYEN 249 Query: 232 GYI 234 G + Sbjct: 250 GLV 252 >gi|228994130|ref|ZP_04154030.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228765582|gb|EEM14236.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 215 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L +K+ S+ LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IASALLSQTLPQAEKQESSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILGKLNLSDRTQAALYAVKNGVV 215 >gi|256389407|ref|YP_003110971.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355633|gb|ACU69130.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 222 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ + L V A G +++T + + LTERE Sbjct: 106 AGATGYLLKDAPREDLIRAVRAAAAGQPVLAPTVAQRLMTRVQTPLAEPAPPGDALTERE 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ E A KL +S TV +L A K +R A+A+A + G + Sbjct: 166 LEVLRLVASGTTNRETARKLFISEATVKTHLLHAYAKFGVRDRAAAVAEAYKRGLL 221 >gi|299538340|ref|ZP_07051623.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298725927|gb|EFI66519.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 210 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 36/76 (47%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + LTERE L L G ++EIA++L +++ TV ++ + KL+ Sbjct: 133 MMHRMRHGNSTPLYEQLTEREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLE 192 Query: 218 AVNRIQAIAKAIRFGY 233 +R QA+ A + G Sbjct: 193 VQDRTQAVVYAFQNGL 208 >gi|269128235|ref|YP_003301605.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313193|gb|ACY99567.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 253 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Query: 152 ACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 ++IT+F L K+ A LTERE L+L G + EIA++L +S +TV Sbjct: 163 MASKLITEFAALAKRSEERQQQVPAPKLTEREMEVLRLVARGLGNREIAKELFISENTVK 222 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R++A+ A+R + Sbjct: 223 NHVRNILEKLQLHSRMEAVVYAVREKLL 250 >gi|284050135|ref|ZP_06380345.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291569796|dbj|BAI92068.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 236 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIAEKL ++V TV ++ S KL A +R QA +A+R G Sbjct: 174 PLTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233 Query: 233 YI 234 +I Sbjct: 234 WI 235 >gi|290581010|ref|YP_003485402.1| putative response regulator [Streptococcus mutans NN2025] gi|254997909|dbj|BAH88510.1| putative response regulator [Streptococcus mutans NN2025] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RE L L GY ++ IA++L +S+ TV ++ + KL +R QA+ Sbjct: 142 PDLHEDLTARERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVY 201 Query: 228 AIRFGYI 234 A + + Sbjct: 202 AFQHHLV 208 >gi|297618086|ref|YP_003703245.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145923|gb|ADI02680.1| two component transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 QV + + ++R LT+RE L+L GY+++E+A L +S TV +L Sbjct: 129 RVAGQVAKELVRQNRRRD--EMKLTKRERDVLELLVKGYSNKEVAAALFISEKTVKNHLT 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL+ +R QA+ A++ + Sbjct: 187 SIFRKLEVKDRTQAVIYALKNKVV 210 >gi|308179160|ref|YP_003918566.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307746623|emb|CBT77595.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 234 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 KR +LT RE L+ +G ++ EIA + LS TV ++ KL +R Sbjct: 154 AAEPKRDPLLDDLTPREQEVLRALAEGLSNAEIAHRFFLSEATVKTHVRRILTKLHLRDR 213 Query: 222 IQAIAKAIRFGYI 234 +QA+ A G + Sbjct: 214 VQAVVYAYETGLV 226 >gi|298244102|ref|ZP_06967908.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551583|gb|EFH85448.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L+L +G+T+ +IAE+L +S TV+ + KL+ +R + + A+R G Sbjct: 153 SLTEREREILKLVAEGFTNNQIAERLVISPKTVDTHRTHIMDKLNLHSRAELVKYAMRRG 212 Query: 233 YI 234 + Sbjct: 213 LL 214 >gi|24378972|ref|NP_720927.1| putative response regulator [Streptococcus mutans UA159] gi|24376861|gb|AAN58233.1|AE014894_10 putative response regulator [Streptococcus mutans UA159] Length = 215 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RE L L GY ++ IA++L +S+ TV ++ + KL +R QA+ Sbjct: 144 PDLHEDLTARERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVY 203 Query: 228 AIRFGYI 234 A + + Sbjct: 204 AFQHHLV 210 >gi|327440878|dbj|BAK17243.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + +LT+RE L G ++EIAE+L +++ TV ++ + KL+ Sbjct: 134 MARMRGTAPALHNHLTDREMEVLLCMARGLANQEIAEELFIALKTVKTHVSNILSKLEVQ 193 Query: 220 NRIQAIAKAIRFGYI 234 +R QA+ A + G + Sbjct: 194 DRTQAVVYAFQNGLV 208 >gi|299821874|ref|ZP_07053762.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817539|gb|EFI84775.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 241 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI Sbjct: 174 PLHLLTHRECEVLQLLTDGKSNRSIGEALFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 233 Query: 230 RFGYI 234 + G++ Sbjct: 234 KHGWV 238 >gi|205375039|ref|ZP_03227830.1| DegU [Bacillus coahuilensis m4-4] Length = 225 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA+ AI Sbjct: 158 PLHLLTRRECEVLQLLADGCSNRTIGETLYISEKTVKNHVSNILQKMNVNDRTQAVVTAI 217 Query: 230 RFGYI 234 + G++ Sbjct: 218 KKGWV 222 >gi|167838741|ref|ZP_02465600.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 137 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 9/138 (6%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL--------MLANEVIIEAHGACYQV 156 G++ PV + ++ + + G + Sbjct: 1 MRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDASDILRLLSLSQLLAGFVHAA 60 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + L+ +R + LT RE LQ AG G T+ EI++ LG+S T+ +L +A K+ Sbjct: 61 MQELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKILGISERTIVFHLSNAARKI 119 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR QA+ A G I Sbjct: 120 GANNRAQAVVMASARGLI 137 >gi|218247165|ref|YP_002372536.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060237|ref|YP_003138125.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167643|gb|ACK66380.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256590403|gb|ACV01290.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 226 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE LQL DGY++ +I+E+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 164 PLTERELEVLQLIVDGYSNAQISEQLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 223 Query: 233 YI 234 + Sbjct: 224 LV 225 >gi|284801354|ref|YP_003413219.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578] gi|284994496|ref|YP_003416264.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923] gi|284056916|gb|ADB67857.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578] gi|284059963|gb|ADB70902.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923] Length = 212 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L +G +++EIA++L +++ TV ++ + KL +R QA A + Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLGVQDRTQAAIYAFK 205 Query: 231 FGYI 234 + Sbjct: 206 HDLV 209 >gi|229000199|ref|ZP_04159768.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|229007721|ref|ZP_04165313.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228753589|gb|EEM03035.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228759531|gb|EEM08508.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 215 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ +++ S+ LT RE LQL G +++EIA L ++ TV A+ Sbjct: 130 IASALLSQTFPQEEQQESSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S KL+ +R QA A++ G + Sbjct: 190 VSSILGKLNLSDRTQAALYAVKNGIV 215 >gi|156741214|ref|YP_001431343.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232542|gb|ABU57325.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 204 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + +L + E ++ LS + + H G Sbjct: 47 VILAADESVLA-DADQVLAEEPRYAALLLSDDPRQADVLRGLPLTAWGILTHDVGAAELA 105 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + +A +I+ A +++ ++ LT RE L+L G ++++IA Sbjct: 106 AALHAVAQGLIVLAPNLAARLLQARQSPVEE--PTGEPLTARERDVLELVSQGLSNKQIA 163 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +KL +S HTV +L S KL +R +A+ + R G I Sbjct: 164 QKLHISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGII 202 >gi|271967187|ref|YP_003341383.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510362|gb|ACZ88640.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V+ + ++ + ++ + + + LTERE L+L G ++ Sbjct: 122 VVAAGDAIVAPSVTRRLLDRFGARLPSAH---QQPTPARLDRLTEREMEVLRLIARGMSN 178 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L +S TV ++G+ KL +R+QA+ A G I Sbjct: 179 AEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGLI 221 >gi|148654958|ref|YP_001275163.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148567068|gb|ABQ89213.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 204 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 5/117 (4%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----SAARNLTER 177 RL G + + LA + A G L L +R LT R Sbjct: 86 RLPLTAWGLLSHDAGAAELAAAIQAVAQGLIVFASELALRLLHRRPLSVAEPVGEPLTAR 145 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L G ++++IA+KL +S HTV +L S KL +R +A+ + R G I Sbjct: 146 ERDVLELVSQGLSNKQIAQKLQISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGII 202 >gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241] gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241] Length = 211 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKITPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNILAKLEVDDRTQAALYAVKHG 209 >gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|302337759|ref|YP_003802965.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] gi|301634944|gb|ADK80371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 886 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 10/127 (7%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLELFKKRSSAAR 172 + + ++ G++ + ++ + + I L L +K++S A Sbjct: 759 VLLFILPEAYEAGFLRLFVDEGPPLAFILCRLEKKVTNSFLREYIGKILTLIEKKASDAG 818 Query: 173 N-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ RE L+L GYT++EIAE+L +SV TV + + KL NR +A+ K Sbjct: 819 SCKPVTLSNRELMVLRLLARGYTNKEIAEELFISVRTVKWHTVNIYKKLGVKNRTEAVVK 878 Query: 228 AIRFGYI 234 A G I Sbjct: 879 ANISGII 885 >gi|149182102|ref|ZP_01860586.1| DegU [Bacillus sp. SG-1] gi|148850204|gb|EDL64370.1| DegU [Bacillus sp. SG-1] Length = 225 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ I Sbjct: 158 PLHLLTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTGI 217 Query: 230 RFGYI 234 + G++ Sbjct: 218 KNGWV 222 >gi|172040517|ref|YP_001800231.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851821|emb|CAQ04797.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 234 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 49/110 (44%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + + + + A G +L + ++ LT RE L L Sbjct: 124 SAGAVGYLLKDAPPSKVLDGIRRAARGESVMAPEIMGKLMGQMTNPTEALTPRELEVLAL 183 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++ +IA L L+ TV ++L KL A NR A+A A + G I Sbjct: 184 VGEGKSNRDIARHLVLTEATVKSHLSHVFRKLGANNRTSAVAVARQRGII 233 >gi|163846245|ref|YP_001634289.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524000|ref|YP_002568470.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667534|gb|ABY33900.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447879|gb|ACM52145.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 217 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK-----KRSSAARN 173 GY++ ++ + + I A G +V+ +F L + S A Sbjct: 96 AGARGYMLKDADSSDIVASIRIVARGEALIQPSITRKVLAEFSRLAASAPATRPSPLAEP 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G+++ EIA++L +S TV Y+ S KL +R QAI +A G Sbjct: 156 LTEREMDVLHGIAAGHSNREIADQLCISEGTVKNYVSSLLAKLAVRDRTQAIIRARELGL 215 Query: 234 I 234 + Sbjct: 216 L 216 >gi|320547873|ref|ZP_08042156.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320447413|gb|EFW88173.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 214 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ +LT RE L+L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 138 AHDQKPELHEDLTARERDILKLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 197 Query: 223 QAIAKAIRFGYI 234 QA+ A + + Sbjct: 198 QAVVYAFKHHLV 209 >gi|289550436|ref|YP_003471340.1| Two-component response regulator-like protein [Staphylococcus lugdunensis HKU09-01] gi|289179968|gb|ADC87213.1| Two-component response regulator-like protein [Staphylococcus lugdunensis HKU09-01] Length = 207 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ + +E K+ L++RE L+ G T+ EIAE L +S Sbjct: 117 RRVLAGERIIHPEAKTVMEAVAKKPHYTNKLSKREIDVLREMVKGKTNREIAETLFVSEK 176 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ ++ KL +R QA A++ I Sbjct: 177 TIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207 >gi|167645327|ref|YP_001682990.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347757|gb|ABZ70492.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 257 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 15/241 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP------RRQQLICELHNYDLDS 61 G++ L ++ +++ + ++ + P + L + + S Sbjct: 5 GEEIERLARVAALAERVRDLGRGVGLPYVAASADISSPEPMLGLDGKPLAETIFEWLDAS 64 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGI 118 F+ P + + A I Sbjct: 65 LYYWRDRAFALRAPFILAARCTAEPFFYHQGRFASWRPLARLEAIEVGEAAKAFGVEAAI 124 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSSAARN 173 P L G V++ S + + E HGA ++++ + + Sbjct: 125 IAPAHLTGGVIGAVVWASAEPLADLPALYAARSDELHGAALRLVSAYRDGCDDDVPPV-R 183 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE CL+ A G T +IA+ +G++ TV ++ +A +KL R QA+ +A GY Sbjct: 184 LTKREIQCLKWAAAGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAVHRATGLGY 243 Query: 234 I 234 I Sbjct: 244 I 244 >gi|313902397|ref|ZP_07835800.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313467328|gb|EFR62839.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 218 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +V+ ++ + LT RE LQL +G ++ EI ++L +S TV Sbjct: 130 LSARVLNLGTRRRERWTPLGGGIPEPLTRREFEVLQLVAEGVSNREIGQRLFISEKTVKN 189 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S KL +R QA+ AIR G++ Sbjct: 190 HITSIFRKLGVADRTQAVIHAIREGWV 216 >gi|297531388|ref|YP_003672663.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254640|gb|ADI28086.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 224 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I L +S TV ++ S KL+ +R QA+ AI Sbjct: 157 PLHLLTRRECEVLQLLADGKSNRAIGGALYISEKTVKNHVSSILQKLNVNDRTQAVVVAI 216 Query: 230 RFGYI 234 + G++ Sbjct: 217 KNGWV 221 >gi|288919634|ref|ZP_06413962.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288348923|gb|EFC83172.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 90 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT+RE L+L G + +IA++L +S +TV ++ + KL +R++ Sbjct: 17 DDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRME 76 Query: 224 AIAKAIRFGYI 234 A+ A+R + Sbjct: 77 AVVYAVREKLL 87 >gi|219847289|ref|YP_002461722.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541548|gb|ACL23286.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 217 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 39/99 (39%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + A H A + + LT RE L+L G +++EIA Sbjct: 114 AHAIRAARRGEAVLHPAVAAKLMQEFNTPRPNEPPVEQLTPREMDVLRLVAKGMSNKEIA 173 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L +S TV ++ + KL +R Q A+R + Sbjct: 174 DTLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKRLV 212 >gi|298346055|ref|YP_003718742.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063] gi|315657448|ref|ZP_07910330.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236116|gb|ADI67248.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063] gi|315491920|gb|EFU81529.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 248 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 39/63 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RET L L G T++EIA +L +S+ TV ++G+ K+ A +R+QA+ A Sbjct: 184 DSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFAYEN 243 Query: 232 GYI 234 G + Sbjct: 244 GLV 246 >gi|163740079|ref|ZP_02147482.1| response regulator [Phaeobacter gallaeciensis BS107] gi|161386628|gb|EDQ10994.1| response regulator [Phaeobacter gallaeciensis BS107] Length = 265 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 82/253 (32%), Gaps = 45/253 (17%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + ++ +S L + I + T+ P N +P Sbjct: 8 SLERCNSTDALWAQALQIFATMGFDYAIYLTVEGDRSHPH------IHTNLPQIYEQLP- 60 Query: 67 ILIETYGDDFLFHFNSGLLP-IIWQS-IQEETVIESSGQLSVRLE-GGLLPFAGIAFPVR 123 ++ D FL H + P + + +E+ +R AGIA PVR Sbjct: 61 ----SHRDPFLDHCCNSYEPQFTGTEFLSDHPYLEAEEMAFIREASAKTGFRAGIAIPVR 116 Query: 124 L-GFHKNGYVIFTSEFLMLAN--------EVIIEAHGACYQVITDFLE------------ 162 L G + G + + + + ++ + + + Sbjct: 117 LQGSDRFGGFNLGTARSRDSFIAHVTGKTDSLRFLCLIIHRRMEELRQTASSPAANPYEP 176 Query: 163 ----------LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L +A L+ RE L L G TS+E A +S HTV+ Y S Sbjct: 177 DAEGAGFDRPLIAPPPAALTRLSPREREVLYLFSQGLTSKECAAVCKISPHTVSEYANSI 236 Query: 213 TVKLDAVNRIQAI 225 KL+ NR++AI Sbjct: 237 YRKLNVRNRVEAI 249 >gi|327441352|dbj|BAK17717.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 224 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE LQL DG ++ I E L +S TV ++ S K++ +R QA+ AI Sbjct: 157 PFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAI 216 Query: 230 RFGYI 234 + G++ Sbjct: 217 KNGWV 221 >gi|299536017|ref|ZP_07049336.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] gi|298728622|gb|EFI69178.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] Length = 224 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE LQL DG ++ I E L +S TV ++ S K++ +R QA+ AI Sbjct: 157 PFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAI 216 Query: 230 RFGYI 234 + G++ Sbjct: 217 KNGWV 221 >gi|288555323|ref|YP_003427258.1| two-component response regulator LiaR [Bacillus pseudofirmus OF4] gi|288546483|gb|ADC50366.1| LiaR two-component response regulator [Bacillus pseudofirmus OF4] Length = 214 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQV---ITDFLELFKKRSSAARNLTERET 179 Y++ TS +A + A G +V + + + +K + LT RE Sbjct: 100 AGAFSYLLKTSSAKEIAQAIRQAADGEPVLASKVTNKMMNHMR-SQKEKALHEELTPREL 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G G +++EIAE L + + TV ++ + KL +R Q A R G + Sbjct: 159 EVLKLIGVGQSNQEIAESLFIGIKTVKTHVSNILQKLALEDRTQIAIYAHRHGLV 213 >gi|126652487|ref|ZP_01724659.1| DegU [Bacillus sp. B14905] gi|169826725|ref|YP_001696883.1| transcriptional regulatory protein degU [Lysinibacillus sphaericus C3-41] gi|126590758|gb|EAZ84873.1| DegU [Bacillus sp. B14905] gi|168991213|gb|ACA38753.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Lysinibacillus sphaericus C3-41] Length = 224 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE LQL DG ++ I E L +S TV ++ S K++ +R QA+ AI Sbjct: 157 PFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAI 216 Query: 230 RFGYI 234 + G++ Sbjct: 217 KNGWV 221 >gi|70726072|ref|YP_252986.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] gi|88952437|sp|Q4L7J5|VRAR_STAHJ RecName: Full=Response regulator protein vraR gi|68446796|dbj|BAE04380.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] Length = 209 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|27468487|ref|NP_765124.1| two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57867340|ref|YP_188991.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251809910|ref|ZP_04824383.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874566|ref|ZP_06283451.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367802|ref|ZP_06614451.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81674015|sp|Q5HN50|VRAR_STAEQ RecName: Full=Response regulator protein vraR gi|81842704|sp|Q8CNP9|VRAR_STAES RecName: Full=Response regulator protein vraR gi|27316034|gb|AAO05168.1|AE016749_114 two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57637998|gb|AAW54786.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251806575|gb|EES59232.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296705|gb|EFA89214.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318141|gb|EFE58538.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329726870|gb|EGG63328.1| response regulator protein VraR [Staphylococcus epidermidis VCU144] gi|329734717|gb|EGG71023.1| response regulator protein VraR [Staphylococcus epidermidis VCU045] gi|329734803|gb|EGG71108.1| response regulator protein VraR [Staphylococcus epidermidis VCU028] Length = 209 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|242241722|ref|ZP_04796167.1| response regulator [Staphylococcus epidermidis W23144] gi|242234812|gb|EES37123.1| response regulator [Staphylococcus epidermidis W23144] Length = 209 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 211 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ S LT+RE LQ G +++EIA +L ++ TV ++ Sbjct: 127 HPKITPALLGRSAIKKEKESPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNILAKLEVDDRTQAALYAVKHG 209 >gi|288904712|ref|YP_003429933.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306830715|ref|ZP_07463880.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977633|ref|YP_004287349.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731437|emb|CBI12989.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304427223|gb|EFM30330.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177561|emb|CBZ47605.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 214 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + A + + A + ++ + +LT RE L+ Sbjct: 99 AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDMQPELHEDLTARERDILR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|16330984|ref|NP_441712.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1653479|dbj|BAA18392.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 222 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Query: 149 AHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A E + S + + LTERE LQL DG ++ +IAEKL ++V T Sbjct: 132 AIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIVDGCSNADIAEKLYITVGT 191 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ + KL A +R QA +AIR G + Sbjct: 192 VKTHVRNILNKLCANDRTQAAVRAIRSGLV 221 >gi|282899743|ref|ZP_06307706.1| orrA (Two Component Transcriptional Regulator, LuxR family) [Cylindrospermopsis raciborskii CS-505] gi|281195358|gb|EFA70292.1| orrA (Two Component Transcriptional Regulator, LuxR family) [Cylindrospermopsis raciborskii CS-505] Length = 238 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 44/74 (59%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + ++ + LT+RE L+L DG ++ +IAEKL ++V TV ++ + KL A + Sbjct: 164 LAIEYEQVLESSPLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADD 223 Query: 221 RIQAIAKAIRFGYI 234 R QA +A+R G + Sbjct: 224 RTQAAVRALRSGLV 237 >gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 211 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + L + +++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALLGILSVKEEKQDSFSMLTKREKEVLREITKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ +R QA A++ G + Sbjct: 187 SNVLAKLEVDDRTQAALYAVKNGVV 211 >gi|52079413|ref|YP_078204.1| putative transcriptional regulator YhcZ [Bacillus licheniformis ATCC 14580] gi|52784773|ref|YP_090602.1| YhcZ [Bacillus licheniformis ATCC 14580] gi|52002624|gb|AAU22566.1| putative transcriptional regulator YhcZ [Bacillus licheniformis ATCC 14580] gi|52347275|gb|AAU39909.1| YhcZ [Bacillus licheniformis ATCC 14580] Length = 217 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V + +K LT RE L G +++EIA L +S TV ++ + Sbjct: 131 IMSHVFHHVSQADEKE--KIHQLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSN 188 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL +R QA A++ G Sbjct: 189 LLSKLGLSDRTQAALFAVKHGL 210 >gi|170076532|ref|YP_001733171.1| response regulator receiver [Synechococcus sp. PCC 7002] gi|169887394|gb|ACB01102.1| Response regulator receiver, LuxR domain [Synechococcus sp. PCC 7002] Length = 231 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 43/94 (45%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + Q E+ + + LT+RE L L +G ++ EIAE L + Sbjct: 125 ASWWDAQATQQIRAQFQQPMAEMPRSVPAQDNPLTQREGEILALIANGKSNSEIAETLYI 184 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV ++ + KL+A +R QA+ A+R G I Sbjct: 185 AASTVRVHVHAILQKLEARDRTQAVVIALRHGLI 218 >gi|83589824|ref|YP_429833.1| two component LuxR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572738|gb|ABC19290.1| two component transcriptional regulator, LuxR family [Moorella thermoacetica ATCC 39073] Length = 222 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + LT RE L G ++ EIA +L +S TV +L K+ +R QA Sbjct: 150 PAPVSIPLTAREREILIHVSLGKSNREIARELFISEKTVKNHLTHIFHKIGVSDRTQAAL 209 Query: 227 KAIRFGY 233 A++ G Sbjct: 210 YALKHGL 216 >gi|313884941|ref|ZP_07818693.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] gi|312619632|gb|EFR31069.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] Length = 211 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + LT RE L L GY+++EIA++L +++ TV ++ + KL+ +R Sbjct: 138 IKDSQPQLHDELTRREYEVLLLIAKGYSNQEIADELFITLKTVKTHVSNILAKLEVSDRT 197 Query: 223 QAIAKAIRFGYI 234 QA A + + Sbjct: 198 QATIYAYQHKLV 209 >gi|323464084|gb|ADX76237.1| two-component response regulator [Staphylococcus pseudintermedius ED99] Length = 208 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H QV+ + + L++RET L+ G T++EIAE L +S T+ ++ Sbjct: 128 HKDAQQVMDTVIT----KPHMLNKLSKRETEVLKEMAKGKTNKEIAETLFVSEKTIKTHV 183 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA A+ + Sbjct: 184 SHIFSKLEVTDRTQAAIYAMENHLV 208 >gi|108804387|ref|YP_644324.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765630|gb|ABG04512.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 19/162 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + QL RL A I + +E + Sbjct: 56 VDVRMPRMDGIQLIERLGREHPEVAAIILTTFDDDEYVFRGLRAGARGYILKDTPSEELA 115 Query: 148 EAHGACYQ------------VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSE 192 A ++ VI++ L K + L+ERE L+L G ++ Sbjct: 116 AAIEKVHRGEAVLDGPITLKVISELGRLSKGPAGPQPGSGGLSEREMEVLRLVASGASNR 175 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L ++ TV ++ S KL +R QA A+ G+I Sbjct: 176 EIARALYITEGTVKNHISSILRKLGFRDRTQAALYALERGWI 217 >gi|295705373|ref|YP_003598448.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803032|gb|ADF40098.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 213 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE LQL G ++ +I+ +L +S HTV ++L + KL NR+Q + A Sbjct: 148 PDTPLSARELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQLTSYAF 207 Query: 230 RFGY 233 + G Sbjct: 208 QNGL 211 >gi|257143112|ref|ZP_05591374.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] Length = 296 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 12/221 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 78 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 135 Query: 84 LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W + + +R+ +G+ + + + + FT+ Sbjct: 136 SMPVVWDLRQLARDHAARGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 195 Query: 139 LMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + A G + R AA LT E L +G + +E Sbjct: 196 RSRDWISSATLEQVLALGLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDKE 255 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I +L S H V+ +L + NRIQ A G I Sbjct: 256 IGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASSRGLI 296 >gi|325271130|ref|ZP_08137690.1| response regulator [Pseudomonas sp. TJI-51] gi|324103735|gb|EGC01022.1| response regulator [Pseudomonas sp. TJI-51] Length = 241 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 59/219 (26%), Gaps = 14/219 (6%) Query: 15 QELSP-RLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 +++ L + +K+ + + C N D + Sbjct: 31 EDVRRQILVDVTRLLKSDFGASYVCDDRRAV-----STRCVSLNIDSRKLIEYDSHR-HV 84 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + S + + +E+S GI G + Sbjct: 85 NDIVTWKMRSLRTATCVDDVIDRKSLEASEHYV-DFLKPCGMHHGINVFFFDQGRDIGDL 143 Query: 133 IFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + + L LT RE S ++ G + Sbjct: 144 RIWRSADQPSFNYRDVAMLNALTPYF---EQSLSCVSPPPGVGLTRREVSVIEHVAAGCS 200 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +EIA +G+ TV +L +A K A NR + + Sbjct: 201 DKEIARLMGIGFTTVRTHLKNAMHKTGASNRTELAVRGR 239 >gi|269926224|ref|YP_003322847.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789884|gb|ACZ42025.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYL 209 +V+ +F + +++ LT+RE L+L G +++EIAE+L LS TV +L Sbjct: 127 LARKVLQEFAQPKIERKKRPDAELTDREREILELLVQGITSNKEIAERLFLSESTVKYHL 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL NR Q +A A++ G I Sbjct: 187 HNILNKLHLQNRAQVVAYALQHGLI 211 >gi|314934012|ref|ZP_07841377.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] gi|313654162|gb|EFS17919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] Length = 207 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIA+ L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|242374097|ref|ZP_04819671.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348222|gb|EES39824.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 207 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIA+ L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|223043570|ref|ZP_03613615.1| two-component response regulator [Staphylococcus capitis SK14] gi|222443058|gb|EEE49158.1| two-component response regulator [Staphylococcus capitis SK14] Length = 207 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T++EIA+ L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|304390186|ref|ZP_07372140.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326668|gb|EFL93912.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 248 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Query: 147 IEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 Q+ + E + + +LT+RET L L G T++EIA +L +S+ Sbjct: 156 RMLEMFAPQLPGEQDEAEEANLVDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMT 215 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G+ K+ A +R+QA+ A G + Sbjct: 216 TVKTHVGNILNKIGARDRVQAVIFAYENGLV 246 >gi|289550400|ref|YP_003471304.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315660134|ref|ZP_07912991.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179932|gb|ADC87177.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315494815|gb|EFU83153.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 209 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A V HG +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSAKDIAEAVRKTYHGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|319892925|ref|YP_004149800.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|317162621|gb|ADV06164.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|323464027|gb|ADX76180.1| two-component response regulator VraR [Staphylococcus pseudintermedius ED99] Length = 209 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 42/81 (51%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +V+ K+R+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 128 AEVLVKMRNRMKQRAELYELLTEREMEILLLISKGYSNQEIASASHITIKTVKTHVSNIL 187 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + G I Sbjct: 188 SKLEVQDRTQAVIYAFQHGLI 208 >gi|319646806|ref|ZP_08001035.1| YhcZ protein [Bacillus sp. BT1B_CT2] gi|317391394|gb|EFV72192.1| YhcZ protein [Bacillus sp. BT1B_CT2] Length = 216 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V + +K LT RE L G +++EIA L +S TV ++ + Sbjct: 131 IMSHVFHHVSQADEKE--KIHQLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSN 188 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL +R QA A++ G Sbjct: 189 LLSKLGLSDRTQAALFAVKHGL 210 >gi|228958531|ref|ZP_04120251.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229044008|ref|ZP_04191697.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229127661|ref|ZP_04256650.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296502827|ref|YP_003664527.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|228655738|gb|EEL11587.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228725289|gb|EEL76557.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228801158|gb|EEM48055.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323879|gb|ADH06807.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 192 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 106 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 165 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 166 SNVLAKLEVDDRTQAALYAVKHG 188 >gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] Length = 213 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|159900604|ref|YP_001546851.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893643|gb|ABX06723.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 191 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176 P + + V+ T + + + L L+E Sbjct: 72 LPHPMPQQRAWGVVSTDAYPQEIWASLQALQLGLCVLSPSILAQIHSPPQPEPLDNQLSE 131 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL +G T+ +IA++L +S HTV ++ + KLD +R +AI + G I Sbjct: 132 REHEVLQLLAEGLTNRQIAQRLIISEHTVKFHVSALLGKLDVSSRTEAIRVGAQRGLI 189 >gi|222084851|ref|YP_002543380.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722299|gb|ACM25455.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 18/220 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI-PNILIETYGDD 75 L L ++ + + A ++ L + ++ D + L YG Sbjct: 42 LQSGLRVLTDYVGASHYLLARCDL---IQESGLDFVVSSDWPFDLVRRLASELTNGYGRA 98 Query: 76 F-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L S P+ +E +S A +G + ++ Sbjct: 99 GELEKSMSLFQPVF---AFLPDDVEPPEGVS---------RHYCALTFNVGRTRFSLMLL 146 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + L+L+ E + + F + + +LTERE CL +G TS+EI Sbjct: 147 ARDSLLLSPERLRDVGLLAGY-FASFTRSVEGKLERDFDLTERELECLFWIAEGKTSDEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 206 AMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 245 >gi|311743637|ref|ZP_07717443.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311312767|gb|EFQ82678.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 220 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ +F+++ + + A +LT RE L+ G+++ EIA +L +S +TV ++ + Sbjct: 136 MATKLLDEFVQIS-RTPAPAASLTARELQVLRHVAKGFSNREIAGELFISENTVKNHIRN 194 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R++A A+R + Sbjct: 195 ILEKLQMKSRMEAAMYAVRSRLV 217 >gi|258516412|ref|YP_003192634.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780117|gb|ACV64011.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 224 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + LT RE LQL ++ EIA++L +S TV ++ + KL NR Sbjct: 149 VMKGNLANGNTLTRREMEILQLIAISLSNREIAKRLFISEPTVKTHVSNILRKLGQQNRS 208 Query: 223 QAIAKAIRFGYI 234 QAI + + G I Sbjct: 209 QAIVYSYKNGLI 220 >gi|91776759|ref|YP_546515.1| LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710746|gb|ABE50674.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 272 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 18/173 (10%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRL-----EGGLLPFAGIAFPVRLGFHKNGY 131 + + P++ I + G+ +V A+ + Sbjct: 101 IQAWRQTSQPVL---IDPYLKDGNFGRFTVPKIDQVNLQESELRNIAAYGLSSADGSISS 157 Query: 132 VIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---------TERETSC 181 S L + + + + + + T RE Sbjct: 158 FFSFSRISGELNASHAYMLELLVPYLHSVLMRVSDGVFNFGDAMGEGVNAGIITPREKEI 217 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G ++ EIA L +S TV ++ + KLD NR A AKA R G I Sbjct: 218 LQWVHTGKSNWEIATILEISPLTVKNHMQNILRKLDVQNRSHAAAKAYRLGLI 270 >gi|294498204|ref|YP_003561904.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] gi|294348141|gb|ADE68470.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] Length = 208 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 39/75 (52%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +K S LT RE L L G T++EIA++L +++ TV ++ + KLD Sbjct: 133 MMSKMRKPSLPHEELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQ 192 Query: 220 NRIQAIAKAIRFGYI 234 +R QA+ A + + Sbjct: 193 DRTQAVIYAFKHKLV 207 >gi|270308323|ref|YP_003330381.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154215|gb|ACZ62053.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 232 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 7/120 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLE--LFKKRSSAARNL 174 +R G TSE L+ A + H + I ++E L Sbjct: 94 LRAGARAYVLKDSTSEELVRAVREAMLGHRYLSPPLSEKAIEAYMEKSAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|315657926|ref|ZP_07910800.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|315496962|gb|EFU85283.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 207 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T+ EIAE L +S T+ ++ KL +R QA A++ Sbjct: 146 KLSKREIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNN 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|229178632|ref|ZP_04305996.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228604790|gb|EEK62247.1| DNA-binding response regulator [Bacillus cereus 172560W] Length = 192 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 106 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 165 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 166 SNVLAKLEVDDRTQAALYAVKHG 188 >gi|126650153|ref|ZP_01722386.1| two-component response regulator [Bacillus sp. B14905] gi|126593325|gb|EAZ87287.1| two-component response regulator [Bacillus sp. B14905] Length = 210 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT+RE L L G ++EIA++L +++ TV ++ + KL+ +R QA+ Sbjct: 143 TPLYDHLTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVY 202 Query: 228 AIRFGY 233 A + G Sbjct: 203 AFQNGL 208 >gi|302552997|ref|ZP_07305339.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470615|gb|EFL33708.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 227 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARN--- 173 +R G +S+ L A VI ++I +F L + + + Sbjct: 101 LRAGASGFLLKDASSDQLAEAVRVIAAGDALLAPVITRKLIAEFSRLDDRPRAPLKERIG 160 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA L ++ TV ++G VKL +R QA A G Sbjct: 161 DLTERETEVLALIAQGLSNAEIARHLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|309790732|ref|ZP_07685281.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308227223|gb|EFO80902.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 193 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L GYV+ S V G Q++ + S LT Sbjct: 75 LRAGVVGYVLKDSTRRTFVAAVRQALRGETFINGSMTVQLLQRLATTHESSSPPRIQLTR 134 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL G T+ EI + L +SV TV ++ KL +R QA +AI G + Sbjct: 135 REQEVLQLITQGKTNREIGQLLNISVGTVKIHVEHIIAKLGVSDRTQAAVRAIDLGLL 192 >gi|294500004|ref|YP_003563704.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349941|gb|ADE70270.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 213 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L+ RE LQL G ++ +I+ +L +S HTV ++L + KL NR+Q Sbjct: 142 ETSITKPDTPLSARELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQ 201 Query: 224 AIAKAIRFGY 233 + A + G Sbjct: 202 LTSYAFQNGL 211 >gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 209 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 123 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 182 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 183 SNVLAKLEVDDRTQAALYAVKHG 205 >gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 211 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A+++G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKYG 209 >gi|329731507|gb|EGG67870.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21193] Length = 209 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|172058475|ref|YP_001814935.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990996|gb|ACB61918.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 231 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE LQL DG+++ I++ L +S TV ++ S K++ +R A+ +A Sbjct: 163 APLHVLTRRECEVLQLLADGFSNRAISDTLFISEKTVKNHVSSILRKMNVPDRTGAVVEA 222 Query: 229 IRFGYI 234 IR G++ Sbjct: 223 IRRGWV 228 >gi|296269819|ref|YP_003652451.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092606|gb|ADG88558.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 226 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 157 ITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L ++ + A LTERE L+L G ++ EIA +L +S TV ++G+ Sbjct: 141 FAALLPPADRQPTPALLERLTERELEVLRLIAKGMSNAEIAAELVVSETTVKTHVGNVLT 200 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R+QA+ A G + Sbjct: 201 KLGLRDRVQAVVLAYETGLV 220 >gi|242371807|ref|ZP_04817381.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242350508|gb|EES42109.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 212 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 132 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 191 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 192 KLEVQDRTQAVIYAFQHNLI 211 >gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI] gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 209 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K+ + LT+RE LQ G +++EIA +L ++ TV ++ + KL+ +R Sbjct: 137 RSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDR 196 Query: 222 IQAIAKAIRFG 232 QA A++ G Sbjct: 197 TQAALYAVKHG 207 >gi|269125776|ref|YP_003299146.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310734|gb|ACY97108.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 220 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 43/82 (52%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+T F ++ + +A LTERE LQL G ++ EIA+ L LS TV ++ + Sbjct: 136 IARRVLTYFADMPDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTLFLSPKTVRNHVSN 195 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 +KL +R QAI A G Sbjct: 196 IFMKLHVADRAQAIVLAREAGL 217 >gi|326330817|ref|ZP_08197118.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325951347|gb|EGD43386.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 209 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 48/154 (31%), Gaps = 11/154 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + S ++ RL + I ++ Sbjct: 55 LDLRMPGTSGVEVIERLRAKESRTGVLVLTTFDTDTDVVAAIEAGATGYLLKDAPTTDLV 114 Query: 148 EAHGACYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 EA A + L + + L+ RE L L G T+ IA KL + Sbjct: 115 EAVRATAAGETVLSPAVATRLASRLRSPGPSAQLSPREREVLTLVARGTTNRVIAAKLFV 174 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV +LG KL +R A+A+A G + Sbjct: 175 SEATVKTHLGHIFDKLGVTDRAAAVARAYDRGIL 208 >gi|297583325|ref|YP_003699105.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141782|gb|ADH98539.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 235 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F E+ +R LT RE LQL DG ++ I E L +S TV ++ + K+ Sbjct: 160 FREVEYRR--PLHLLTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKMGMN 217 Query: 220 NRIQAIAKAIRFGYI 234 +R QA+ AI+ G++ Sbjct: 218 DRTQAVVDAIKNGWV 232 >gi|329314560|gb|AEB88973.1| Response regulator protein vraR [Staphylococcus aureus subsp. aureus T0131] Length = 209 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|217976880|ref|YP_002361027.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217502256|gb|ACK49665.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 242 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 14/238 (5%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 + + + S +L+ L L++ + + + I + D Sbjct: 8 EQIQIEVAES--QLNELLGLVRRIYDLHSLIYLCPSFM-GHSLSEPFIVQPTC--PGWAD 62 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 I + D +LP+ W ++ + + G G+ PVR Sbjct: 63 RQKIQSQLLVDSMTSAIARAVLPMDWAQLRRRSAQKRGIHFLPNSLGNN--RQGVTIPVR 120 Query: 124 LGFHKNGYVIFTSEFL------MLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTE 176 ++ + +E+ + Y V +L S+ A ++T Sbjct: 121 GPSGGYWALLIATSNETHLQWTARRHELTKDLVQIAYYVHARACDLHGVSYSADAADVTS 180 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ +G EIA ++ +S TV A L SA VKL A+NR A AKA+ G I Sbjct: 181 REIEALQFMAEGKMIVEIATRMRVSQSTVLALLESARVKLHALNRAHAAAKALGVGLI 238 >gi|311032412|ref|ZP_07710502.1| two-component response regulator-like protein [Bacillus sp. m3-13] Length = 210 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H + ++ LT+RE L G +++EIA L ++ TV + Sbjct: 125 LHPKVTSHVMSHFTKGFGSTNLHEELTKRELEVLAEIAKGKSNKEIASSLFITEKTVKTH 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + + KL+ +R QA A++ G Sbjct: 185 VSNILAKLEVADRTQAALYAVKHGI 209 >gi|163743438|ref|ZP_02150817.1| response regulator [Phaeobacter gallaeciensis 2.10] gi|161383268|gb|EDQ07658.1| response regulator [Phaeobacter gallaeciensis 2.10] Length = 265 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 82/253 (32%), Gaps = 45/253 (17%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + ++ +S L + I + T+ P N +P Sbjct: 8 SLERCNSTDALWAQALQIFATMGFDYAIYLTVEGDRSHPH------IHTNLPQIYEQLP- 60 Query: 67 ILIETYGDDFLFHFNSGLLP-IIWQS-IQEETVIESSGQLSVRLE-GGLLPFAGIAFPVR 123 ++ D FL H + P + + +E+ +R AGIA PVR Sbjct: 61 ----SHRDPFLDHCCNSYEPQFTGTEFLSDHPYLEAEEMAFIREASAKTGFRAGIAIPVR 116 Query: 124 L-GFHKNGYVIFTSEFLMLAN--------EVIIEAHGACYQVITDFLE------------ 162 L G + G + + + + ++ + + + Sbjct: 117 LQGSDRFGGFNLGTARSRDSFIAHVTGKTDSLRFLCLIIHRRMEELRQTASSPAANPSEP 176 Query: 163 ----------LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L +A L+ RE L L G TS+E A +S HTV+ Y S Sbjct: 177 DAEGAGFDRPLIAPPPTALTRLSPREREVLYLFSQGLTSKECAAVCKISPHTVSEYANSI 236 Query: 213 TVKLDAVNRIQAI 225 KL+ NR++AI Sbjct: 237 YRKLNVRNRVEAI 249 >gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 219 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 133 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 193 SNVLAKLEVDDRTQAALYAVKHG 215 >gi|300088311|ref|YP_003758833.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528044|gb|ADJ26512.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 231 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V+ +F EL + LT+RE L DG T+++IA +L +S T+ ++ Sbjct: 135 IAQRVLRNFQELAEDDDGLDVVTPLTQRERQILIRVTDGLTNKQIATELKISEQTIKNHI 194 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+A +R A AIR GYI Sbjct: 195 SAILRKLNANDRAHAAVLAIRRGYI 219 >gi|262164556|ref|ZP_06032294.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] gi|262026936|gb|EEY45603.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] Length = 224 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 30/238 (12%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S + ++S+ + L I F++ + R L H + Sbjct: 9 LSNQLRCTENATSIHDWFDELK---KDISFE-FSILGVFG-----ERYSLEPICHGFSPT 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D F+ F I+ + + +L L G I Sbjct: 60 QFSTCFGNKRPENDPFVAAFQQSGQGIM-ALMDPYNHPDYGKRLL--LAGQHGEKKAIFL 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLT 175 +++ I + + + ++ LT Sbjct: 117 TSFGN-------------RHPSSDEIDTLYLLTPHLYMASDSIAQQSQQLHLPPPLNPLT 163 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 164 DRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|228475909|ref|ZP_04060619.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis SK119] gi|314936099|ref|ZP_07843446.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] gi|228270064|gb|EEK11534.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis SK119] gi|313654718|gb|EFS18463.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] Length = 207 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G T+++IA+ L +S TV ++ KL +R QA AI Sbjct: 146 KLSKREMEVLKEMVKGKTNKDIAKSLFVSEKTVKTHVSHIFNKLQVSDRTQAAIYAIENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|261420594|ref|YP_003254276.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768265|ref|YP_004133766.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261377051|gb|ACX79794.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113131|gb|ADU95623.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 224 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S KL +R QA+ AI Sbjct: 157 PLHLLTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLSVNDRTQAVVVAI 216 Query: 230 RFGYI 234 + G++ Sbjct: 217 KNGWV 221 >gi|170078560|ref|YP_001735199.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886229|gb|ACA99942.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 251 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ + LT+RE LQL DG ++ EIAE L ++V TV ++ + KL A Sbjct: 175 QATSPEDQQLLESCPLTDRELEVLQLIVDGCSNSEIAEHLFITVGTVKTHVRNILNKLCA 234 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA +A+R G + Sbjct: 235 DDRTQAAVRALRSGLV 250 >gi|47093968|ref|ZP_00231703.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258611471|ref|ZP_05711518.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|47017667|gb|EAL08465.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258600349|gb|EEW13674.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] Length = 171 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 105 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 164 Query: 231 FGYI 234 + Sbjct: 165 HDLV 168 >gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 211 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A+++G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKYG 209 >gi|332978068|gb|EGK14806.1| nitrate/nitrite response regulator protein NarL [Desmospora sp. 8437] Length = 216 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R S +LT RE L L G +++EIAE+L +S TV ++ + KL +R QAI Sbjct: 145 DRGSNEDSLTPRELDVLNLMVKGLSNKEIAEQLFISDKTVKIHVSNILKKLRVKSRSQAI 204 Query: 226 AKAIRFGYI 234 AI+ + Sbjct: 205 IYAIQHELV 213 >gi|320160955|ref|YP_004174179.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994808|dbj|BAJ63579.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 217 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 39/83 (46%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + K + L+ RE L L +G ++ EIAE+L +S TV +L S Sbjct: 134 VVAEFARSPRPSSAKMAELTEPLSPREIEVLFLVAEGKSNREIAEQLVISEGTVKNHLSS 193 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R+QA+ +A G + Sbjct: 194 ILSKLGAKDRLQAVIRAREAGIL 216 >gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 211 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN-------L 174 L + G + + + II H R + L Sbjct: 92 LPAMEAGADGYQLKEVQPDQLVASIIAVHQGNANFHPKVTPALLGRPAVKEEKKDSFSML 151 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G + Sbjct: 152 TKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGVV 211 >gi|296282761|ref|ZP_06860759.1| regulatory protein, LuxR [Citromicrobium bathyomarinum JL354] Length = 252 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 83/249 (33%), Gaps = 22/249 (8%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN-------- 56 L + + ++ P + R Y + A D ++ + + N Sbjct: 3 DLASVRITDQDDIRPAAEALHAVALERG---YRVAPAHDIADKRTPVDKDGNVLAMEVFG 59 Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE---GGLL 113 + D P T + ++ + L + Sbjct: 60 WAGDESAWWRNSRIALDSPITTACRFENEPYWVNEDGFRTRLPNAYLEKIDLTNFTKRAM 119 Query: 114 PFAGIAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITD---FLELFK 165 A I PV + F + G V F L E + + + Sbjct: 120 TRAAIVVPVHMAFGRIGAVSFNPLDEDRIDLAADYEEYADLFAILSRAFISSYTVVMTSP 179 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A L++RE CL+ A G T EI+ + S TV ++ +A++KL+AVNR Q + Sbjct: 180 EPLPAGSRLSKREVECLRWAAIGKTDLEISMIMSRSRATVRFHMHNASIKLNAVNRSQTV 239 Query: 226 AKAIRFGYI 234 KA + GYI Sbjct: 240 FKAAQLGYI 248 >gi|300914706|ref|ZP_07132022.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307724060|ref|YP_003903811.1| LuxR family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115614|ref|YP_004185773.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|300889641|gb|EFK84787.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307581121|gb|ADN54520.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X513] gi|319928705|gb|ADV79390.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 205 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ + + ++ ++LT RE L+L GY+++EIA+KL LS TV ++ Sbjct: 121 YIHPSLMEEIDNIDQETL--KKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVY 178 Query: 211 SATVKLDAVNRIQAIAK 227 + KLD +R QA Sbjct: 179 NIFKKLDVKDRTQAAIY 195 >gi|291301939|ref|YP_003513217.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571159|gb|ADD44124.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 39/86 (45%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + E ++ LTERE L L G ++ EIA++L +S TV + Sbjct: 135 LRRLLEKFVDRLPEPDGATPASLEVLTEREREVLILVAKGMSNTEIAKELTVSETTVKTH 194 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 +G KL +R+QA+ A G + Sbjct: 195 VGHVLTKLGVRDRVQAVVLAYETGLV 220 >gi|167037195|ref|YP_001664773.1| two component LuxR family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040665|ref|YP_001663650.1| two component LuxR family transcriptional regulator [Thermoanaerobacter sp. X514] gi|166854905|gb|ABY93314.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X514] gi|166856029|gb|ABY94437.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 208 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ + + ++ ++LT RE L+L GY+++EIA+KL LS TV ++ Sbjct: 124 YIHPSLMEEIDNIDQETL--KKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVY 181 Query: 211 SATVKLDAVNRIQAIAK 227 + KLD +R QA Sbjct: 182 NIFKKLDVKDRTQAAIY 198 >gi|269839470|ref|YP_003324162.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791200|gb|ACZ43340.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 188 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Query: 139 LMLANEVIIEAHGACYQ----VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + E +I A A V +R LT+RE L L DG ++ I Sbjct: 87 RDASVEEVIAAVRAVASGLSVVAPTLAARIVRREPEEVPLTQREVEVLALMADGLPNKAI 146 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +LG+S HTV ++GS KL A +R +A+A A R G + Sbjct: 147 AARLGISEHTVKFHVGSILAKLGASSRAEAVAIAARKGLL 186 >gi|86356298|ref|YP_468190.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280400|gb|ABC89463.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 18/220 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD-IPNILIETYGDD 75 L L + + + A ++ L + ++ D I N L+ TY Sbjct: 31 LQSGLRALTDYVGASHYLLARCDL---IQESGLDFIVSSDWPFDLVRDIANDLVSTYARS 87 Query: 76 F-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L P + + E + + +G + + Sbjct: 88 TELEKCMQVFQP-NFALLPEGADVPEGAS-----------RQYCSLTFNVGRSRLALMFL 135 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E +L+ E + + + FL + LT+RE CL +G TS+EI Sbjct: 136 FGEGFILSPERLRDVGLLAGYI-ASFLRCGGAKVDRDFELTDRELECLFWIAEGKTSDEI 194 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 195 AMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 234 >gi|229062451|ref|ZP_04199766.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228716840|gb|EEL68528.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 186 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL---ELFKKRSSAARNLTERE 178 +R G +S+ ++ A ++++ + +T L K S LTERE Sbjct: 68 LRAGADGYLLKDSSSDQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKSESNENELTERE 127 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 128 KEILFELAKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQLV 183 >gi|57652103|ref|YP_186767.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82751537|ref|YP_417278.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161005|ref|YP_494517.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195780|ref|YP_500589.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222034|ref|YP_001332856.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|161510103|ref|YP_001575762.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141457|ref|ZP_03565950.1| response regulator VraR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734427|ref|ZP_04868592.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|258451050|ref|ZP_05699086.1| two-component system response regulator [Staphylococcus aureus A5948] gi|262050230|ref|ZP_06023081.1| two-component response regulator [Staphylococcus aureus D30] gi|262052884|ref|ZP_06025068.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|282923220|ref|ZP_06330901.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|284024930|ref|ZP_06379328.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|294849429|ref|ZP_06790171.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|304379068|ref|ZP_07361815.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694172|sp|Q5HEP0|VRAR_STAAC RecName: Full=Response regulator protein vraR gi|57286289|gb|AAW38383.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82657068|emb|CAI81505.1| two-component response regulator [Staphylococcus aureus RF122] gi|87126979|gb|ABD21493.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203338|gb|ABD31148.1| DNA-binding response regulator VraR, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374834|dbj|BAF68094.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|160368912|gb|ABX29883.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727580|gb|EES96309.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257861292|gb|EEV84104.1| two-component system response regulator [Staphylococcus aureus A5948] gi|259159238|gb|EEW44298.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|259161692|gb|EEW46283.1| two-component response regulator [Staphylococcus aureus D30] gi|269941355|emb|CBI49752.1| response regulator VraR [Staphylococcus aureus subsp. aureus TW20] gi|282593131|gb|EFB98130.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|294823566|gb|EFG39993.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|298695222|gb|ADI98444.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300078692|gb|ADJ67243.1| VraR [Staphylococcus aureus] gi|300078695|gb|ADJ67245.1| VraR [Staphylococcus aureus] gi|300078698|gb|ADJ67247.1| VraR [Staphylococcus aureus] gi|302751756|gb|ADL65933.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342303|gb|EFM08195.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196046|gb|EFU26406.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS01] gi|320139738|gb|EFW31607.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142346|gb|EFW34160.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323439154|gb|EGA96882.1| two-component response regulator [Staphylococcus aureus O11] gi|323441562|gb|EGA99212.1| two-component response regulator [Staphylococcus aureus O46] gi|329728633|gb|EGG65063.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21189] Length = 209 Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|330685558|gb|EGG97204.1| response regulator protein VraR [Staphylococcus epidermidis VCU121] Length = 209 Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|306832892|ref|ZP_07466025.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424967|gb|EFM28100.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 214 Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +LT RE L+L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 138 AHDMQPELHDDLTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 197 Query: 223 QAIAKAIRFGYI 234 QA+ A + + Sbjct: 198 QAVVYAFKHHLV 209 >gi|301059490|ref|ZP_07200403.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300446385|gb|EFK10237.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 225 Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + V + L +K R LT RE ++L +G ++++I+++L +S TV Sbjct: 132 VSHIVAKNLLAAEEKKGNARMPGYDTLTRREQEIMRLIAEGRSTKQISQQLFISQKTVEN 191 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KLD + ++ + A ++G+I Sbjct: 192 HRANIFSKLDIHSTMELVRFAAKYGFI 218 >gi|218437173|ref|YP_002375502.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169901|gb|ACK68634.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 234 Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE LQL DGY++ IA++L ++V TV ++ + KL A +R QA +A+R G Sbjct: 172 SLTDRELEVLQLIVDGYSNAAIADQLFITVGTVKTHVRNILNKLCADDRTQAAVRALRAG 231 Query: 233 YI 234 + Sbjct: 232 LV 233 >gi|310659232|ref|YP_003936953.1| degu [Clostridium sticklandii DSM 519] gi|308826010|emb|CBH22048.1| DegU [Clostridium sticklandii] Length = 211 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + S +LT RE L L +G ++++I++ L +S TV ++ S KLD +R Sbjct: 137 RVSRNIKSGVDSLTRREYEVLLLIAEGMSNKDISDHLVISEKTVKNHVSSILRKLDLQDR 196 Query: 222 IQAIAKAIRFGY 233 QA AI+ Sbjct: 197 TQAAIFAIKQKL 208 >gi|270264144|ref|ZP_06192411.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041793|gb|EFA14890.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 247 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 14/189 (7%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 +D ++ + D L ++ + P +W G Sbjct: 51 MDWFELYTKSNFQFIDPVLITASNRITPFLWDENLI-IESGVKFSKLFDAAKYYNIVNGY 109 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKR-- 167 F + H + F + + N +E ++ITD+ + R Sbjct: 110 TFVLHDHHHNLVVLSFFLDAPLSENRGKLEKNKNKIQMLLINTHEKLITDYQSVSSARYF 169 Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + ++RE L LA G + EIA LG+ + T+ ++G+A KL N AI Sbjct: 170 ERINDKEIFSDRENDVLYLASMGKSYPEIALILGVKLTTIKYHIGNAVKKLGVTNAKHAI 229 Query: 226 AKAIRFGYI 234 + I Sbjct: 230 RLGVELQLI 238 >gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 215 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALLGRSAIKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L] gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Ames] gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. 'Ames Ancestor'] gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Sterne] gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L] gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] Length = 209 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K+ + LT+RE LQ G +++EIA +L ++ TV ++ + KL+ +R Sbjct: 137 RSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDR 196 Query: 222 IQAIAKAIRFG 232 QA A++ G Sbjct: 197 TQAALYAVKHG 207 >gi|119509629|ref|ZP_01628775.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119465648|gb|EAW46539.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 238 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 41/65 (63%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LTERE LQL +G ++ +IAE+L ++V TV ++ + KL A +R QA +A+ Sbjct: 173 AAYTLTERELEVLQLIVEGCSNADIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 232 Query: 230 RFGYI 234 R G + Sbjct: 233 RSGLV 237 >gi|57234205|ref|YP_181778.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224653|gb|AAW39710.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 232 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLE--LFKKRSSAARNL 174 +R G TSE L+ + ++ H + I ++E L Sbjct: 94 LRAGARAYVLKDSTSEELVRSVREAVQGHRYLSSPLSEKAIEAYMEKSAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G+T EIAE+L +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVAQGHTCAEIAERLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|158317264|ref|YP_001509772.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112669|gb|ABW14866.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 250 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + R A LT RE L+L +G + EIA KL +S +TV ++ + K Sbjct: 169 FATMARGGEDRPRAHAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDK 228 Query: 216 LDAVNRIQAIAKAIRFGY 233 L +R++A+ A+R G Sbjct: 229 LQLHSRMEAVMYAVRQGL 246 >gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 211 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A+++G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKYG 209 >gi|148655770|ref|YP_001275975.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567880|gb|ABQ90025.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 254 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 38/77 (49%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D L + L++RE L+ G ++ EIAE L +S TV ++ S KL Sbjct: 157 QDLTNLPEVEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLS 216 Query: 218 AVNRIQAIAKAIRFGYI 234 +R QA+ A+R G+I Sbjct: 217 LNDRTQAVLYALRRGWI 233 >gi|297243640|ref|ZP_06927571.1| response regulator of two-component system [Gardnerella vaginalis AMD] gi|296888391|gb|EFH27132.1| response regulator of two-component system [Gardnerella vaginalis AMD] Length = 260 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +SA LT+RE L G +++EIA+KL +S+ TV ++ K+DA +R+QA+ Sbjct: 191 ENSAIPELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVV 250 Query: 227 KAIRFGYI 234 A G + Sbjct: 251 FAYENGLV 258 >gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 215 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALFGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 211 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + KK+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALLGRSAAKKKKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|226359681|ref|YP_002777459.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226238166|dbj|BAH48514.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLE--LFKKRSSAARN----- 173 L +G+++ + L + + A G +V L L + Sbjct: 95 LRAGASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRRLLSRFLDDGPAPLRDPEVLDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL G ++ EIA +L LS T+ +++G KL+ +R+QA+ A G Sbjct: 155 LTEREREVLQLVATGLSNTEIAAQLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|224552987|gb|ACN54744.1| PagR [Pantoea agglomerans] Length = 210 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 59/182 (32%), Gaps = 4/182 (2%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 N + + D+ + D + + W++ + + ++ + Sbjct: 28 NNNPEWFDVYLERKYQFIDPVIIRGLRCVEDYSWENKVILSEGYNLTRIFNESIQ-YNIY 86 Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARN 173 G FP+ + + S + E E + L L+ + + Sbjct: 87 QGRTFPLHDYLNNLVLLSVISQKDSDFNIEKYREKFISFLTNLHQKTLNLYSQHNQKKNV 146 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+ G T E++ L ++ TV ++G+ KL N A+ Sbjct: 147 FLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGAELQ 206 Query: 233 YI 234 + Sbjct: 207 LL 208 >gi|313624283|gb|EFR94330.1| sensory transduction protein LiaR [Listeria innocua FSL J1-023] Length = 212 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ +K+ +LT RE L L +G +++EIA++L +++ TV ++ + Sbjct: 132 KMMQRLTAKPEKKL--HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILS 189 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A + + Sbjct: 190 KLDVQDRTQAAIYAFKHDLV 209 >gi|223694801|gb|ACN18083.1| two component transcriptional regulator [uncultured bacterium BLR5] Length = 215 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 39/63 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT RET LQL +G +++E+ +L +S TV ++ + KL A +R QA++ A+R Sbjct: 150 ENLTSRETEVLQLISEGNSNKEVGNRLSISEETVKGHVKNILGKLGANDRTQAVSIAVRR 209 Query: 232 GYI 234 G I Sbjct: 210 GII 212 >gi|254994407|ref|ZP_05276597.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 187 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 121 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 180 Query: 231 FGYI 234 + Sbjct: 181 HDLV 184 >gi|229822851|ref|ZP_04448921.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] gi|229787664|gb|EEP23778.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] Length = 211 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + R LT RE L+L G GY+++ IAE+L +++ TV ++ + KL+ +R Sbjct: 137 RLDQARPKPHDELTNRELDVLRLIGQGYSNQAIAEELVITLKTVKTHVSNIFTKLEVEDR 196 Query: 222 IQAIAKAIRFGY 233 QA A+ Sbjct: 197 TQAAIYAVHHHL 208 >gi|23100277|ref|NP_693744.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778509|dbj|BAC14778.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 210 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ LTERE L L G +++EIA +L +++ TV ++ + KL+ +R QA+ Sbjct: 143 TALHEQLTEREKEILLLMAKGKSNQEIANELFIALKTVKVHVSNILGKLEVHDRTQAVIY 202 Query: 228 AIRFGYI 234 A + + Sbjct: 203 AFQNKLV 209 >gi|256751296|ref|ZP_05492176.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] gi|256749851|gb|EEU62875.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] Length = 205 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ + + ++ ++LT RE L+L +GY+++EIA+KL LS TV ++ Sbjct: 121 YIHPSLMEEIDNIDQETL--KKDLTPREIEILKLISNGYSNKEIAQKLFLSEKTVKNHVY 178 Query: 211 SATVKLDAVNRIQAIAK 227 + KLD +R QA Sbjct: 179 NIFKKLDVKDRTQAAIY 195 >gi|228908028|ref|ZP_04071877.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851625|gb|EEM96430.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 209 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 123 HPKVTPALMGRSTVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 182 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 183 SNVLAKLEVDDRTQAALYAVKHG 205 >gi|75906884|ref|YP_321180.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700609|gb|ABA20285.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 239 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 LTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 237 Query: 234 I 234 + Sbjct: 238 V 238 >gi|159899859|ref|YP_001546106.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892898|gb|ABX05978.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 461 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+ G ++ EIA L +S +TV ++ + KL ++R +A +A+R G Sbjct: 6 PLSEREIEVLRQLALGASNNEIANTLVISPNTVKVHIRNIYAKLGVLSRAEATLEAVRRG 65 Query: 233 YI 234 I Sbjct: 66 LI 67 >gi|315283654|ref|ZP_07871783.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] gi|313612706|gb|EFR86719.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] Length = 69 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI Sbjct: 2 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 61 Query: 230 RFGYI 234 + G++ Sbjct: 62 KHGWV 66 >gi|218662896|ref|ZP_03518826.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 236 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 70/227 (30%), Gaps = 8/227 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + L + + L S D + + + + Sbjct: 14 AGTRGLFAQALGRVATAFGLSHATLMHAPSPEDLLLKP--LLIESSLPPAYVRDFDRANM 71 Query: 71 TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 G F +P+ W + Q + + Sbjct: 72 MRGCPFGLRLRESAVPLAWHLNDARQWSGLSRRTACPDAAPRDTGGRCHADQLQSTAAAL 131 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 ++ T + + H + SA L+ RE ++ Sbjct: 132 VFLFLRRTRRTRPERGQRAGDYHPPALDAYNTVRRNEE---SAHNALSARELEVVRWTAQ 188 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 189 GKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 235 >gi|261407693|ref|YP_003243934.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284156|gb|ACX66127.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 220 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 39/97 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L ++ H + + ++ LT RE LQL G + EI+E Sbjct: 124 ELHPDAAGLLMTHVTSPAGEDEANGSSHQEAAQLDKLTRREQEVLQLIASGMNNREISEA 183 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L ++ TV ++ KL +R QA A++ G + Sbjct: 184 LYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 220 >gi|324326299|gb|ADY21559.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 216 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|323489900|ref|ZP_08095122.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] gi|323396407|gb|EGA89231.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] Length = 224 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 10/89 (11%) Query: 156 VITDFLELFKKRS----------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++ +F L ++ + LT+RE+ LQL DG ++ I E L +S TV Sbjct: 133 LVMEFRRLSERENKGSFHQTEIRRPYHLLTKRESEVLQLLTDGQSNRVIGETLFISEKTV 192 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S K+ +R QA+ AI+ G++ Sbjct: 193 KNHVSSILQKMQVNDRTQAVVTAIKNGWV 221 >gi|297537928|ref|YP_003673697.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257275|gb|ADI29120.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 247 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 16/238 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + S L L + ++ I S+ + + ++ + Sbjct: 9 RISQRTHLFNWLQGELQYLLGHEVMIFGIKSSENDTYHFEYFTSTRYFNDEQLSSVIEQE 68 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL-SVRLEGGLLPFAGIAFPVRLGFHK 128 + + LP+ + + IE + ++ + + V GF Sbjct: 69 TGLISQIIKIWRETTLPLF---VTNQENIEDFSHFSVINFNEDIVKKSELKNFVMHGFGD 125 Query: 129 NG-----YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-------SSAARNLTE 176 N VIF + + + + + R ++ A +T+ Sbjct: 126 NHSKISSIVIFGRLHKFPSINLGNILELIMPHLHCALVRITSSRSNVVINTAAIANIMTK 185 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE+ LQ G T+ EI+ L +S TV ++ + KLD NR QA KA + G I Sbjct: 186 RESEILQWLHMGKTNWEISSILDISQLTVKNHVQNILRKLDVQNRSQAAVKAAKLGLI 243 >gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALIGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELYITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|326391463|ref|ZP_08212998.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] gi|325992489|gb|EGD50946.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] Length = 208 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++LT RE L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 143 KDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 198 >gi|311029481|ref|ZP_07707571.1| two-component response regulator [Bacillus sp. m3-13] Length = 214 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 36/79 (45%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +LT+RE L GDG T++EI+E+L + + TV ++ + K Sbjct: 132 ASKMMNRFRSPSKLPHDDLTDRELEVLMCLGDGLTNQEISEELFIGIKTVKTHVSNILGK 191 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R QA A R G + Sbjct: 192 LQVADRTQAAIYANRHGVL 210 >gi|307266655|ref|ZP_07548184.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918318|gb|EFN48563.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] Length = 208 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++LT RE L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 143 KDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 198 >gi|289578700|ref|YP_003477327.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|297544934|ref|YP_003677236.1| two component LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528413|gb|ADD02765.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter italicus Ab9] gi|296842709|gb|ADH61225.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 205 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++LT RE L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 140 KDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 195 >gi|219849670|ref|YP_002464103.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543929|gb|ACL25667.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 216 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEI 194 ++ + +V+ +F L + LTERE L G ++ EI Sbjct: 116 RIVTRGEALIQPSITRKVLAEFTRLAGGHTPVTSPLTEPLTEREMDVLHGIAAGKSNREI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L +S TV ++ S KLD +R QAI +A I Sbjct: 176 ADQLCISEGTVKNHVSSLLAKLDVRDRTQAIIRARELRLI 215 >gi|118477693|ref|YP_894844.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416918|gb|ABK85337.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 221 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K+ + LT+RE LQ G +++EIA +L ++ TV ++ + KL+ +R Sbjct: 149 RSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDR 208 Query: 222 IQAIAKAIRFG 232 QA A++ G Sbjct: 209 TQAALYAVKHG 219 >gi|256396518|ref|YP_003118082.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362744|gb|ACU76241.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 228 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 44/105 (41%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 NG +LA V G + + R + R LT RE +L +G Sbjct: 119 NGVRTVARGESLLAPAVTRTLIGRFAERLRPGDPARAAREAVTRTLTPRELEVFELIAEG 178 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ EIA L ++ TV Y+ KLD +R+QA+ A R G Sbjct: 179 LSNAEIAASLFITPETVKTYVSRILTKLDLRDRVQAVVLAYRIGL 223 >gi|229190347|ref|ZP_04317348.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228593131|gb|EEK50949.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 209 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 123 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 182 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 183 SNVLAKLEVDDRTQAALYAVKHG 205 >gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 209 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 37/71 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K+ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R Sbjct: 137 RSAVKKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDR 196 Query: 222 IQAIAKAIRFG 232 QA A++ G Sbjct: 197 TQAALYAVKHG 207 >gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 213 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALMGRTAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|317154890|ref|YP_004122938.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316945141|gb|ADU64192.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 220 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQL 184 ++ +A + +V+ ++ + S LT RE L++ Sbjct: 104 ESAAGNLIRGLDAVARGELFLDDALSQEVVYKLMQAKDGQGSGRDPYTTLTAREQEVLRM 163 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ E+A KL +S TV + + KL + ++ I A R G I Sbjct: 164 LAEGMTAREVAAKLFISPKTVENHRTNLMKKLGLHSTVELIRYAARLGLI 213 >gi|163847185|ref|YP_001635229.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525026|ref|YP_002569497.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668474|gb|ABY34840.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448905|gb|ACM53171.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAE 196 +V++E ++++ F L + + L+ERE L+ G +++EIA+ Sbjct: 135 DVLLEEPRVASRILSQFRNLPEVQMLVGDPSIQVFTPLSEREIEVLERIAAGNSNKEIAD 194 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV ++ S KL +R QA+ A+R G+I Sbjct: 195 ALGISTQTVKNHISSILRKLSLNDRTQAVIFALRRGWI 232 >gi|300863456|ref|ZP_07108411.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300338519|emb|CBN53553.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 244 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE ++L +G ++EEI ++L +S+ TV ++ + KL +R QA +A+R Sbjct: 180 ANPLTEREKEVIELIVEGCSNEEICKQLYISLGTVKTHVRNILNKLSCDDRTQAAVRALR 239 Query: 231 FGYI 234 G + Sbjct: 240 AGLV 243 >gi|163940056|ref|YP_001644940.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862253|gb|ABY43312.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 213 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|163848961|ref|YP_001637005.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526915|ref|YP_002571386.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670250|gb|ABY36616.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450794|gb|ACM55060.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 209 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ LE + AA LTERE L+L +G T+ EIA +L +S TV ++ S Sbjct: 128 LAPALMQRILEAQTSK--AADTLTEREREVLKLVAEGLTNAEIASRLTVSEETVKTHVAS 185 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA A+R G + Sbjct: 186 ILRKLGLAHRTQAAIYALRHGLV 208 >gi|328957201|ref|YP_004374587.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] gi|328673525|gb|AEB29571.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] Length = 210 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L G +++EIA+ L +++ TV ++ + KL+ +R QA A + Sbjct: 146 HEDLTNREQEILMLIAQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205 Query: 231 FGYI 234 I Sbjct: 206 HHLI 209 >gi|323702109|ref|ZP_08113777.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] gi|323532991|gb|EGB22862.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] Length = 218 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +V+ +F L LTERE L+ G ++++IA+ L +S TV + Sbjct: 131 ALTAKVLAEFSRLTSVDHHDKKHSTLTERELEVLKQVAKGQSNKDIAKTLFISEKTVKNH 190 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L + K+ +R QA AI+ + Sbjct: 191 LTNIFQKIGVADRTQAALYAIKEKLV 216 >gi|255025548|ref|ZP_05297534.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-003] Length = 117 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI Sbjct: 50 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 109 Query: 230 RFGYI 234 + G++ Sbjct: 110 KHGWV 114 >gi|229167101|ref|ZP_04294844.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616335|gb|EEK73417.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 211 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|37223245|gb|AAQ90224.1| LuxR [Photobacterium leiognathi] Length = 197 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 9/187 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +++ L + I + Y + I + NY + D Sbjct: 15 DINQCLSEMAKII---HCDYYLFAIIYPHSIIRPDISIIDNYPEKWRKYYDEAGLLEYDP 71 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + S PI W + E+ I+ ++ G +FP+ + G + F Sbjct: 72 VVNYSKSHHSPINWN-VFEKKSIKKESPNVIKEAQASGLITGFSFPIHTANNGFGMLSFA 130 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYT 190 + + + ++ L ++ + A LT+RET CL A +G + Sbjct: 131 HSDKDIYTDSLFLHANTNVPLMLPSLVDSYQKINTAHKKSDSILTKRETECLAWASEGKS 190 Query: 191 SEEIAEK 197 + +I++ Sbjct: 191 TWDISKI 197 >gi|15924874|ref|NP_372408.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15927458|ref|NP_374991.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|21283553|ref|NP_646641.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49484125|ref|YP_041349.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49486702|ref|YP_043923.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|148268356|ref|YP_001247299.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394418|ref|YP_001317093.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980200|ref|YP_001442459.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253314946|ref|ZP_04838159.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729642|ref|ZP_04863807.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006672|ref|ZP_05145273.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426016|ref|ZP_05602438.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257428689|ref|ZP_05605084.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431299|ref|ZP_05607675.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257434017|ref|ZP_05610368.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436921|ref|ZP_05612963.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793762|ref|ZP_05642741.1| two-component system response regulator [Staphylococcus aureus A9781] gi|258408904|ref|ZP_05681186.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420992|ref|ZP_05683923.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422961|ref|ZP_05685860.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258430036|ref|ZP_05688406.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443446|ref|ZP_05691788.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258445304|ref|ZP_05693495.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258447868|ref|ZP_05696002.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|258453301|ref|ZP_05701286.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203536|ref|YP_003282805.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282894549|ref|ZP_06302777.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|282904515|ref|ZP_06312400.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282906287|ref|ZP_06314139.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282909203|ref|ZP_06317019.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911509|ref|ZP_06319309.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914681|ref|ZP_06322466.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282917229|ref|ZP_06324984.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282919718|ref|ZP_06327450.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282925122|ref|ZP_06332782.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282928056|ref|ZP_06335663.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|283771033|ref|ZP_06343924.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283958645|ref|ZP_06376091.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|293507758|ref|ZP_06667600.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|293510776|ref|ZP_06669478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|293539315|ref|ZP_06671994.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|295407262|ref|ZP_06817061.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295428465|ref|ZP_06821092.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275883|ref|ZP_06858390.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208909|ref|ZP_06925314.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246211|ref|ZP_06930062.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297590064|ref|ZP_06948704.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300913033|ref|ZP_07130471.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|81696298|sp|Q6G850|VRAR_STAAS RecName: Full=Response regulator protein vraR gi|81696461|sp|Q6GFH3|VRAR_STAAR RecName: Full=Response regulator protein vraR gi|81704309|sp|Q7A0I0|VRAR_STAAW RecName: Full=Response regulator protein vraR gi|81704831|sp|Q7A2Q1|VRAR_STAAM RecName: Full=Response regulator protein vraR gi|81705432|sp|Q7A4R9|VRAR_STAAN RecName: Full=Response regulator protein vraR gi|90116383|sp|P0C0Z1|VRAR_STAA1 RecName: Full=Response regulator protein vraR gi|9501772|dbj|BAB03325.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|13701677|dbj|BAB42970.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|14247656|dbj|BAB58046.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|16151628|dbj|BAB69827.1| response regulator [Staphylococcus aureus] gi|21204994|dbj|BAB95689.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49242254|emb|CAG40961.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49245145|emb|CAG43611.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|147741425|gb|ABQ49723.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946870|gb|ABR52806.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722335|dbj|BAF78752.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253726638|gb|EES95367.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257271159|gb|EEV03316.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257274333|gb|EEV05845.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257277948|gb|EEV08604.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257280943|gb|EEV11087.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257283710|gb|EEV13835.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787734|gb|EEV26074.1| two-component system response regulator [Staphylococcus aureus A9781] gi|257840351|gb|EEV64813.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257842940|gb|EEV67358.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257846748|gb|EEV70763.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849630|gb|EEV73598.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851331|gb|EEV75271.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257855822|gb|EEV78746.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257858800|gb|EEV81669.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|257864509|gb|EEV87252.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075826|gb|ACY11799.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282313080|gb|EFB43478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282316356|gb|EFB46733.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282318856|gb|EFB49211.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282321395|gb|EFB51721.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282324518|gb|EFB54830.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326771|gb|EFB57068.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330484|gb|EFB60001.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590120|gb|EFB95201.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|282595071|gb|EFC00038.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282763036|gb|EFC03168.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|283459627|gb|EFC06718.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283471154|emb|CAQ50365.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus ST398] gi|283789685|gb|EFC28507.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817564|gb|ADC38051.1| Two component transcriptional regulator VraR, LuxR family [Staphylococcus aureus 04-02981] gi|290919850|gb|EFD96919.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|291094821|gb|EFE25089.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|291466407|gb|EFF08931.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|294967837|gb|EFG43867.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295127447|gb|EFG57086.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886470|gb|EFH25398.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176918|gb|EFH36175.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297577192|gb|EFH95906.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300885811|gb|EFK81018.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333549|gb|ADL23742.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|312437651|gb|ADQ76722.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312830256|emb|CBX35098.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129309|gb|EFT85303.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS03] gi|315193411|gb|EFU23808.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS00] gi|329724817|gb|EGG61321.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21172] Length = 209 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|320011249|gb|ADW06099.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 230 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 33/231 (14%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + R+ LD G Sbjct: 19 VDDHPMWRDAVARDLTESGFDVVATAGDGPGAVRRAHAAVPDVLVLDL--------NLPG 70 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ S L V + A + V+ G Sbjct: 71 MPGVQVCKE--------------LVGSQPGLRVLVLSASGEHADVLEAVKSGATGYLLKS 116 Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAAR------NLTERETSCL 182 +++ L A G V+ ++ L + AA LT+RET L Sbjct: 117 ASTQELTDAVRATAAGDPVFTPGLAGLVLGEYRRLASDPAPAAPDQPKVPQLTDRETEVL 176 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 177 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 227 >gi|253575856|ref|ZP_04853190.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844650|gb|EES72664.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 242 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G +++ I E L +S TV ++ S K+D +R QA+ AI+FG Sbjct: 179 PLTRREAEVLRLMAEGRSNKMIGEHLFISEKTVKNHVSSILQKMDVDDRTQAVINAIKFG 238 Query: 233 YI 234 ++ Sbjct: 239 WV 240 >gi|134299954|ref|YP_001113450.1| two component LuxR family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052654|gb|ABO50625.1| two component transcriptional regulator, LuxR family [Desulfotomaculum reducens MI-1] Length = 218 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V+ +F L S + NLTERE L+ G +++ IA L +S TV +L Sbjct: 132 LTARVLAEFTRLSSGDYSEKKHLNLTEREIEVLKQVAKGQSNKAIANALYISEKTVKNHL 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + K+ +R QA AI+ + Sbjct: 192 TNIFQKIGVADRTQAALYAIKEKLV 216 >gi|111017172|ref|YP_700144.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110816702|gb|ABG91986.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 219 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LTERE LQL G ++ EIA +L LS T+ +++G KL+ +R+QA+ Sbjct: 147 RDPEVLDVLTEREREVLQLVATGLSNTEIAGQLFLSESTIKSHVGRILTKLNVRDRVQAV 206 Query: 226 AKAIRFGYI 234 A G + Sbjct: 207 VLAYETGLV 215 >gi|28895408|ref|NP_801758.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50914724|ref|YP_060696.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71904035|ref|YP_280838.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94988957|ref|YP_597058.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94990957|ref|YP_599057.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94992850|ref|YP_600949.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94994837|ref|YP_602935.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] gi|28810654|dbj|BAC63591.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50903798|gb|AAT87513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71803130|gb|AAX72483.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94542465|gb|ABF32514.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94544465|gb|ABF34513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94546358|gb|ABF36405.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94548345|gb|ABF38391.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] Length = 215 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 139 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 198 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 199 QAVVYAFRHHLV 210 >gi|167578474|ref|ZP_02371348.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] Length = 296 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 78 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 135 Query: 84 LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W + + +R+ +G+ + + + + FT+ Sbjct: 136 SMPVVWDLRQLARDHAARGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 195 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 196 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 254 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 255 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASSRGLI 296 >gi|52787183|ref|YP_093012.1| YvqC [Bacillus licheniformis ATCC 14580] gi|163119642|ref|YP_080588.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|319647713|ref|ZP_08001931.1| YvqC protein [Bacillus sp. BT1B_CT2] gi|52349685|gb|AAU42319.1| YvqC [Bacillus licheniformis ATCC 14580] gi|145903152|gb|AAU24950.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|317390054|gb|EFV70863.1| YvqC protein [Bacillus sp. BT1B_CT2] Length = 211 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L ++LT RE L+L +G T++ IAE+L +++ TV ++ + KL+ + Sbjct: 137 LRHSAGEQPLHQSLTARELEILKLVAEGKTNKGIAEELYITIKTVKTHVTNILSKLEVDD 196 Query: 221 RIQAIAKAIRFGYI 234 R QA A R + Sbjct: 197 RTQAAIYAHRNKLV 210 >gi|300866500|ref|ZP_07111190.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300335457|emb|CBN56350.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 241 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L GY++ IAEKL ++V TV ++ + KL A +R QA A+R G Sbjct: 179 PLTERELEVLELIVQGYSNAAIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVLALRSG 238 Query: 233 YI 234 + Sbjct: 239 LV 240 >gi|108805405|ref|YP_645342.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766648|gb|ABG05530.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 207 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 9/166 (5%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL--------GFHK 128 + SGL P + E ++ RL G P + F Sbjct: 41 VLRLASGLRP-DVVLLDLEMPGTGGVEVLRRLRGLDDPPKVVVFTAYDDERLLEALREGA 99 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G ++ + + + V G + K+ + LT RE L+L G Sbjct: 100 RGCLLKGASRTEIFDAVRTVHAGGSVIPPEITARVLKEMRGESEPLTPRELEVLRLVARG 159 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ E+A L +S TV ++ S KL A NR QA+A A G + Sbjct: 160 LTNREVARALFISERTVKFHVSSLLAKLRAENRTQAVAIARERGLL 205 >gi|16800090|ref|NP_470358.1| hypothetical protein lin1021 [Listeria innocua Clip11262] gi|16413480|emb|CAC96252.1| lin1021 [Listeria innocua Clip11262] gi|313609539|gb|EFR85084.1| sensory transduction protein LiaR [Listeria monocytogenes FSL F2-208] gi|313619559|gb|EFR91226.1| sensory transduction protein LiaR [Listeria innocua FSL S4-378] Length = 212 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205 Query: 231 FGYI 234 + Sbjct: 206 HDLV 209 >gi|325290865|ref|YP_004267046.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324966266|gb|ADY57045.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 212 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE +QL G ++++I EKL ++ TV +L + KL NR+Q +A A + G Sbjct: 149 KLSEREKEVVQLVSQGLSNKDIGEKLHITESTVKNHLRNILAKLHLRNRVQLVAFAYKNG 208 >gi|229012624|ref|ZP_04169797.1| Response regulator receiver [Bacillus mycoides DSM 2048] gi|228748647|gb|EEL98499.1| Response regulator receiver [Bacillus mycoides DSM 2048] Length = 215 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE LQL G + EIA+ L +S TV ++ + KLD +R QA AIR Sbjct: 151 TETLTKREIDVLQLLAYGKQNHEIAKILYVSEGTVKTHIHNILQKLDVTDRTQAAVMAIR 210 Query: 231 FGYI 234 + Sbjct: 211 KKIV 214 >gi|158317584|ref|YP_001510092.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112989|gb|ABW15186.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 237 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT+RE L+L G + +IA++L +S +TV ++ + KL +R++ Sbjct: 164 DDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRME 223 Query: 224 AIAKAIRFGYI 234 A+ A+R + Sbjct: 224 AVVYAVREKLL 234 >gi|19746547|ref|NP_607683.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21910902|ref|NP_665170.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|56808638|ref|ZP_00366364.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pyogenes M49 591] gi|209559762|ref|YP_002286234.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|306826950|ref|ZP_07460250.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|19748758|gb|AAL98182.1| putative two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21905108|gb|AAM79973.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|209540963|gb|ACI61539.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|304430968|gb|EFM33977.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] Length = 213 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 137 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 196 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 197 QAVVYAFRHHLV 208 >gi|315302505|ref|ZP_07873346.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] gi|313629123|gb|EFR97415.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] Length = 212 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205 Query: 231 FGYI 234 + Sbjct: 206 HDLV 209 >gi|239638058|ref|ZP_04679017.1| response regulator protein VraR [Staphylococcus warneri L37603] gi|239596341|gb|EEQ78879.1| response regulator protein VraR [Staphylococcus warneri L37603] Length = 209 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A V HG +V+ KKR+ LT+RE Sbjct: 95 LDAGVDSYILKTTSASDIAEAVRKTYHGESVFEPEVLVKMRNRMKKRAELYEMLTDREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|289434290|ref|YP_003464162.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170534|emb|CBH27074.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633930|gb|EFS00643.1| sensory transduction protein LiaR [Listeria seeligeri FSL N1-067] gi|313638502|gb|EFS03673.1| sensory transduction protein LiaR [Listeria seeligeri FSL S4-171] Length = 212 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205 Query: 231 FGYI 234 + Sbjct: 206 HDLV 209 >gi|228476314|ref|ZP_04061015.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|314936061|ref|ZP_07843410.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] gi|228269597|gb|EEK11103.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|313655878|gb|EFS19621.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] Length = 209 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KK++ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKKAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|157693715|ref|YP_001488177.1| response regulator [Bacillus pumilus SAFR-032] gi|194015458|ref|ZP_03054074.1| response regulator [Bacillus pumilus ATCC 7061] gi|157682473|gb|ABV63617.1| response regulator [Bacillus pumilus SAFR-032] gi|194012862|gb|EDW22428.1| response regulator [Bacillus pumilus ATCC 7061] Length = 211 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + L S LT RE L+L DG +++ IAE+L +++ TV ++ + KL Sbjct: 133 VMNKLRHSSNGSILHDALTAREMEILKLIADGKSNKVIAEELFITIKTVKTHITNILSKL 192 Query: 217 DAVNRIQAIAKAIRFGYI 234 D +R QA A R I Sbjct: 193 DVEDRTQAAVYAHRHKLI 210 >gi|51892061|ref|YP_074752.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855750|dbj|BAD39908.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 218 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L+ RE L+LA G T +EIA KL ++ TV ++ KL NR +A+ AI Sbjct: 147 PGQQLSPREIEVLRLASTGLTYKEIAAKLYVAESTVKNHMRHILEKLHLRNRSEAVGYAI 206 Query: 230 RFGY 233 R G Sbjct: 207 RTGL 210 >gi|226312803|ref|YP_002772697.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095751|dbj|BAH44193.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 20/115 (17%) Query: 140 MLANEVIIEAHGACYQ------------VITDFLELFKKRSSAA--------RNLTERET 179 ++ +++ +Q + + L+ ++ + LT+RE Sbjct: 113 DADSQEMLDLIRRAHQGEALFHTVTAAKALAEALQGQRETPDSTTTSQSVLLDELTDREL 172 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ DGY +++IA+ L +S TV ++ K+ +R QA+AKA+R + Sbjct: 173 DVLQQIADGYRNDQIAQNLFISEGTVKTHVHRILQKMGVEDRTQAVAKALRHKIV 227 >gi|218134363|ref|ZP_03463167.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] gi|217989748|gb|EEC55759.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] Length = 218 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L +G + EIA +L +S TV ++ + K++ +R QA AI+ Sbjct: 155 LTKRELQVLKLIANGMFNREIAVQLKISERTVKNHISNIFRKINVSDRTQAAVFAIKNKI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|254390766|ref|ZP_05005978.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|294815206|ref|ZP_06773849.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|326443564|ref|ZP_08218298.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|197704465|gb|EDY50277.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|294327805|gb|EFG09448.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] Length = 328 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 74/227 (32%), Gaps = 14/227 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L + RL + ++ ++ + Q + D + Sbjct: 116 AERLVGLDAIQSRLEALTEELRGE-----CLSIMPGGAQSQASLDASRPLDEKAMARGVE 170 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + Y D + + + E + + + P+ Sbjct: 171 MCALYQDSV----RNDSATLAYAQWTTEHGGQVRTSPVLPPRLLIFDRETAVVPIDPANS 226 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + G + S ++ A + E + + + +T E L+L Sbjct: 227 RLGALCTRSPGIVAALVTLFEQTWQAAVPLGAI-----PQQAPRDGITPGEQELLKLLAS 281 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T E ++LGLS+ TV + S +L+A +R +A KA + G++ Sbjct: 282 GMTDEAAGKRLGLSLRTVRRQMSSLMERLNATSRFEAGLKAAQRGWL 328 >gi|116872424|ref|YP_849205.1| LuxR family DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741302|emb|CAK20424.1| DNA-binding response regulator; LuxR family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 212 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205 Query: 231 FGYI 234 + Sbjct: 206 HDLV 209 >gi|16803062|ref|NP_464547.1| hypothetical protein lmo1022 [Listeria monocytogenes EGD-e] gi|46907254|ref|YP_013643.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47096354|ref|ZP_00233950.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217964878|ref|YP_002350556.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224500732|ref|ZP_03669081.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224502663|ref|ZP_03670970.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226223640|ref|YP_002757747.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254823705|ref|ZP_05228706.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254832231|ref|ZP_05236886.1| two-component response regulator [Listeria monocytogenes 10403S] gi|254852518|ref|ZP_05241866.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254898804|ref|ZP_05258728.1| two-component response regulator [Listeria monocytogenes J0161] gi|254911707|ref|ZP_05261719.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254931406|ref|ZP_05264765.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|254936033|ref|ZP_05267730.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255520598|ref|ZP_05387835.1| two-component response regulator [Listeria monocytogenes FSL J1-175] gi|290893828|ref|ZP_06556807.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|300764232|ref|ZP_07074227.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|315281752|ref|ZP_07870312.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|16410424|emb|CAC99100.1| lmo1022 [Listeria monocytogenes EGD-e] gi|46880521|gb|AAT03820.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47015312|gb|EAL06249.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217334148|gb|ACK39942.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225876102|emb|CAS04808.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605826|gb|EEW18434.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|258608621|gb|EEW21229.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|290556655|gb|EFD90190.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|293582956|gb|EFF94988.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293589656|gb|EFF97990.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|293592927|gb|EFG00688.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300515222|gb|EFK42274.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|307570563|emb|CAR83742.1| DNA-binding response regulator, LuxR family [Listeria monocytogenes L99] gi|313614594|gb|EFR88178.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|328466914|gb|EGF38023.1| two-component response regulator [Listeria monocytogenes 1816] gi|328475371|gb|EGF46144.1| two-component response regulator [Listeria monocytogenes 220] gi|332311431|gb|EGJ24526.1| Transcriptional regulatory protein [Listeria monocytogenes str. Scott A] Length = 212 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205 Query: 231 FGYI 234 + Sbjct: 206 HDLV 209 >gi|322383770|ref|ZP_08057521.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151982|gb|EFX44925.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 213 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 E + A++ I E + +T L + LT RE L L DG T+++IAE Sbjct: 113 EGIHKASQGIPEMNPEVSLALTRGLR-QRNAQPDEEGLTIREKEVLLLIADGKTNKDIAE 171 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S+ TV ++ + +K + +R Q A R G++ Sbjct: 172 ELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGWV 209 >gi|251798752|ref|YP_003013483.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546378|gb|ACT03397.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 221 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 142 ANEVIIEAHGAC----------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 A E+I HGA Q +T L +S LTERE L L +G ++ Sbjct: 117 AEELIYALHGAVKGMPVMTADVSQALTRGLRQRTAQSG-DEELTEREKEVLLLIAEGRSN 175 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EI E+L +SV TV ++ + +K + +R Q A R G++ Sbjct: 176 KEIGEELHISVKTVKTHVSNLLMKCELEDRTQLAVLAHRKGWV 218 >gi|139473330|ref|YP_001128045.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|134271576|emb|CAM29801.1| response regulator protein [Streptococcus pyogenes str. Manfredo] Length = 213 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 137 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 196 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 197 QAVVYAFRHHLV 208 >gi|229133094|ref|ZP_04261931.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228650370|gb|EEL06368.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 211 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|196250317|ref|ZP_03149010.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|196210206|gb|EDY04972.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 552 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 17/174 (9%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 I + Y +D L H+ + + + + + V F V Sbjct: 379 AISAEMASCYQEDVLRHYGRSIKQVAKSQVPSLRQVGDKTVMEVP------------FFV 426 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTER 177 R G++ V EV + A A ++ + + LT R Sbjct: 427 RDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSR 486 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA + Sbjct: 487 EMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 540 >gi|167628890|ref|YP_001679389.1| transcriptional regulator, luxr family, putative [Heliobacterium modesticaldum Ice1] gi|167591630|gb|ABZ83378.1| transcriptional regulator, luxr family, putative [Heliobacterium modesticaldum Ice1] Length = 214 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + + + LTERE L L G T+ +IA L +S TV ++ + KL + Sbjct: 139 RRFNRTVAHSGDELTEREKEVLGLIAQGSTNADIASALFISEKTVKNHITNIFRKLQVKD 198 Query: 221 RIQAIAKAIRFGYI 234 R QA AI+ + Sbjct: 199 RTQAALYAIKNRLV 212 >gi|138894013|ref|YP_001124466.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265526|gb|ABO65721.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Geobacillus thermodenitrificans NG80-2] Length = 531 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 17/174 (9%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 I + Y +D L H+ + + + + + V F V Sbjct: 358 AISAEMASCYQEDVLRHYGRSIKQVAKSQVPSLRQVGDKTVMEVP------------FFV 405 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTER 177 R G++ V EV + A A ++ + + LT R Sbjct: 406 RDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSR 465 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA + Sbjct: 466 EMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 519 >gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 213 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|288553881|ref|YP_003425816.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288545041|gb|ADC48924.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 211 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 8/104 (7%) Query: 138 FLMLANEVIIEAHG--------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 E I H V+T + + + LT+RE L G Sbjct: 107 DPEELAETIRALHAGESKVHSKVMKYVLTRISHKEDEEEAKVKRLTKREKEVLIELAKGR 166 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++E+A+ L + TV ++ + KL+ +R QA A+R G Sbjct: 167 SNKELADVLHIKEKTVKTHISNILSKLELSDRTQAALFAMRMGI 210 >gi|256785092|ref|ZP_05523523.1| two-component system response regulator [Streptomyces lividans TK24] gi|289768986|ref|ZP_06528364.1| two-component system response regulator [Streptomyces lividans TK24] gi|289699185|gb|EFD66614.1| two-component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181 GY++ + L V A G + ++ A L+ RE Sbjct: 111 AGATGYLLKDAPRDDLFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEPLSAREREV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EIA +L +S TV +L KL +R A+A A G + Sbjct: 171 LALVARGTSNKEIARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223 >gi|152032258|gb|ABS28971.1| acyl-homoserine lactone transcriptional regulator [Burkholderia vietnamiensis] Length = 154 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 13/158 (8%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 NY + D + H S + P+IW++ + ++ G Sbjct: 1 NYPQTWVERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEAGQHGLR 55 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRS 168 G P G + + + E ++ L L + Sbjct: 56 HGWCMPSVSRTGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVP 114 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 LT RE LQ + G T EI + + + T Sbjct: 115 EYTVELTVREREALQWSAAGKTYAEIGKIMHVDDRTXK 152 >gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550] gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 213 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|50955380|ref|YP_062668.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951862|gb|AAT89563.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 47/112 (41%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 L +GY++ S + L + G L + + +LT RE L Sbjct: 94 SLDAGASGYLLKDSTPVELFAAIRTARDGGSALSPAVASRLMDRMRAPQESLTPREIEVL 153 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T+ ++ E+L +S TV ++ KL R A+++A++ G I Sbjct: 154 ALLATGRTNRQVGERLFVSETTVKTHVNHIFTKLGVDTRAAAVSRAMKEGLI 205 >gi|75909280|ref|YP_323576.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703005|gb|ABA22681.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 209 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERET 179 L G ++ TS + + A G + D LE F R ++ ++LT RE Sbjct: 94 LRSGVRGILLDTSTESEILTAIEAIALGL-IVIHPDVLEFFSVREKAVTNPVQSLTPREI 152 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ+ G G ++ IA+ L +S HTV ++ S KL R +A+ +R G I Sbjct: 153 EVLQMLGSGLGNKAIAQSLHISDHTVKFHVSSIFQKLAVSTRTEAVTVGVRLGLI 207 >gi|21223813|ref|NP_629592.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7105984|emb|CAB76009.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 224 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181 GY++ + L V A G + ++ A L+ RE Sbjct: 111 AGATGYLLKDAPRDDLFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEPLSAREREV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EIA +L +S TV +L KL +R A+A A G + Sbjct: 171 LALVARGTSNKEIARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223 >gi|330684760|gb|EGG96455.1| putative response regulator protein VraR [Staphylococcus epidermidis VCU121] Length = 207 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RET L+ G T++EIA L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|311067417|ref|YP_003972340.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310867934|gb|ADP31409.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 215 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V+T + LT RE L G +++EIA L +S TV ++ Sbjct: 127 AIMPHVLTHMRTQHEPEKEKYYQLTRREKDVLMEIASGKSNKEIAASLFISEKTVKTHVS 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KLD +R QA A++ Sbjct: 187 NLLAKLDVADRTQAALFAVKHHL 209 >gi|310639866|ref|YP_003944624.1| transcriptional regulatory protein degu (protease production enhancerprotein) [Paenibacillus polymyxa SC2] gi|309244816|gb|ADO54383.1| Transcriptional regulatory protein DegU (Protease production enhancerprotein) [Paenibacillus polymyxa SC2] Length = 217 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + +L+ERE L GY ++EIAE L +SV TV ++ + KL+ R + Sbjct: 145 EGIAGPYESLSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLNLKTRPEL 204 Query: 225 IAKAIRFGYI 234 + A++ G + Sbjct: 205 VKFALKKGLL 214 >gi|239637871|ref|ZP_04678832.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri L37603] gi|239596434|gb|EEQ78970.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri L37603] Length = 207 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RET L+ G T++EIA L +S T+ ++ KL +R QA A+ Sbjct: 146 KLSKRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 233 YI 234 I Sbjct: 206 LI 207 >gi|156744143|ref|YP_001434272.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235471|gb|ABU60254.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 213 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182 GY++ ++ L + A G L + + LTERET L Sbjct: 96 RAGAMGYLLKDTQAEELRRAIKAAAAGQVQLSPRAAARLMRDVRAPESPEKLTERETDVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G ++EIA +L + TV ++ + KLD +R QA A+R G + Sbjct: 156 RLLALGRANKEIARELNIGEKTVKTHVSAILRKLDVPSRTQAALYAVRIGLV 207 >gi|25029338|ref|NP_739392.1| putative two-component response regulator [Corynebacterium efficiens YS-314] gi|23494626|dbj|BAC19592.1| putative two-component response regulator [Corynebacterium efficiens YS-314] Length = 225 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE L+L Sbjct: 117 AGALGYLLKDAPPNELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 176 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI L LS TV ++L KL +R A+A A G + Sbjct: 177 AGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGLL 225 >gi|228939396|ref|ZP_04101986.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972275|ref|ZP_04132888.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978889|ref|ZP_04139256.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228780846|gb|EEM29057.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228787459|gb|EEM35425.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820291|gb|EEM66326.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 209 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K+ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 123 HPKVTPALMGRTAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 182 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 183 SNVLAKLEVDDRTQAALYAVKHG 205 >gi|239825932|ref|YP_002948556.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239806225|gb|ACS23290.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 556 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITD----FLELFKK 166 I+F V H V EV + G V+ + Sbjct: 421 FGTVMEISFSVHEHVHGVMAVHLKDIEAAKEAEVYVAALIGIGTMVMKQNTYQTPKQELN 480 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L L G ++ EIA++L +S+HTV ++ + K+ +R Q IA Sbjct: 481 IDMLSERLTTREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIA 540 Query: 227 KAIRF 231 + Sbjct: 541 LVYQL 545 >gi|322506324|gb|ADX01778.1| ER transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 197 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 41/164 (25%), Gaps = 9/164 (5%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F + L+NY D + H L P++W Sbjct: 32 LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMVSLQPLVWS 91 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148 S +T E G A R G + L+ + Sbjct: 92 SQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148 Query: 149 --AHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDG 188 + V + ++ A N LT RE L+ +G Sbjct: 149 TNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEG 192 >gi|126661670|ref|ZP_01732679.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126617044|gb|EAZ87904.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 201 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R G Sbjct: 139 PLTERELDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRSG 198 Query: 233 YI 234 + Sbjct: 199 LV 200 >gi|329948078|ref|ZP_08294979.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523217|gb|EGF50318.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 244 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 4/134 (2%) Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + AG + + R S +++ V + + Sbjct: 109 FDLDEYAFAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRVTQRMLEMFAPSLPN 168 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +LT RE L L G ++ EIA+ L +S TV ++G+ KLD Sbjct: 169 SGAPTQASDPRIDSLTPREKEILVLMSQGLSNAEIADHLVVSATTVKTHVGNVLAKLDVR 228 Query: 220 NRIQAIAKAIRFGY 233 +R+QA+ A G Sbjct: 229 DRVQAVVVAYETGL 242 >gi|297195179|ref|ZP_06912577.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722161|gb|EDY66069.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178 +R G Y + L A + H Q I L + +LTERE Sbjct: 98 LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQQEIAGALLSDGDPGNGTGRGNSLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGM 212 >gi|154685393|ref|YP_001420554.1| YhcZ [Bacillus amyloliquefaciens FZB42] gi|154351244|gb|ABS73323.1| YhcZ [Bacillus amyloliquefaciens FZB42] Length = 214 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ G +++EIA L +S TV ++ + KL+ +R QA A++ Sbjct: 147 DQLTPREKDVLQEIAKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVK 205 >gi|147677779|ref|YP_001211994.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146273876|dbj|BAF59625.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 217 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 154 YQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V +F L S + L T RE L+L G ++ IA+KL +S TV +L S Sbjct: 133 AKVFAEFTRLSTISSRYSHPLGLTRREVDVLRLVAQGDSNRSIAQKLFISEKTVKNHLTS 192 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA A++ I Sbjct: 193 IFQKLGVDDRTQAALHAVKNKII 215 >gi|145594985|ref|YP_001159282.1| response regulator receiver [Salinispora tropica CNB-440] gi|145304322|gb|ABP54904.1| response regulator receiver [Salinispora tropica CNB-440] Length = 220 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%) Query: 149 AHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 A +V + + R A LT RE L+L DG ++ EIA L +S Sbjct: 127 AALLAPEVTRQLVGRYAARIRPAEGSSGDIPLTPRELEVLRLIADGLSNSEIAATLVISQ 186 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ KLD +R+QA+ A R G + Sbjct: 187 ETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218 >gi|17229196|ref|NP_485744.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17135524|dbj|BAB78070.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 239 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 LTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 237 Query: 234 I 234 + Sbjct: 238 V 238 >gi|220909912|ref|YP_002485223.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866523|gb|ACL46862.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 245 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+L G+++ EIA KL ++V TV ++ + KL A +R QA A+R Sbjct: 181 ADPLTQRELEVLELIVKGHSNAEIASKLYITVGTVKTHVRNILNKLCADDRTQAAVLALR 240 Query: 231 FGYI 234 G + Sbjct: 241 SGLV 244 >gi|42781357|ref|NP_978604.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737279|gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 211 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA A+++G Sbjct: 151 LTKREQEVLREIAQGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYGV 210 Query: 234 I 234 I Sbjct: 211 I 211 >gi|229164821|ref|ZP_04292645.1| Response regulator receiver [Bacillus cereus R309803] gi|228618645|gb|EEK75647.1| Response regulator receiver [Bacillus cereus R309803] Length = 221 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Query: 153 CYQVITDFLE----LFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 FL+ + ++ A LT+RE LQL G + EIA+ L +S TV Sbjct: 133 ANHAFAQFLKYDNVPEEDSTANEYAEALTKREIDVLQLLAYGKQNHEIAKILCVSEGTVK 192 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL+ +R QA AIR + Sbjct: 193 THIHKILQKLEVTDRTQAAVMAIRQKIV 220 >gi|307328232|ref|ZP_07607410.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886066|gb|EFN17074.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194 + +++ V T + LT RE L+L +G ++ EI Sbjct: 119 GIRTVATGAALLDPEVTRQLVGTYAARIRPAEGPPRDIPLTPRELEVLRLIANGLSNSEI 178 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L +S TV ++ KL +R+QA+ A R G + Sbjct: 179 AATLVISQETVKTFVSRILAKLGLRDRVQAVVYAYRQGLV 218 >gi|254292885|ref|YP_003058908.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041416|gb|ACT58211.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC 49814] Length = 249 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 12/237 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +E++ + +F + L+F R + + D + Sbjct: 14 QSAKSQEEITKAIQGFVENKGFWSFN-FGYLDTLNFSRADAPLKFISTMSDDWAEHYMNE 72 Query: 69 IETYGDDFLFHFN-SGLLPIIWQSIQEE--TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + PI+ ++ V+ S + +R G P+ Sbjct: 73 KYEEVDFAVRELRKERPTPILVGYELQKKMQVLTSDEEKYLRDAAEANWQNGCVIPLGSL 132 Query: 126 FHKN---GYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELF-KKRSSAARNLTER 177 N + SE + EA + L + LT+R Sbjct: 133 PMDNKPPAGIGVASELREKEFLKVWEAGASEILVFMNFMNQVLSQSIADLLYSIEPLTDR 192 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E CL G + I ++L ++ TVN ++ +A KL A A+AKAIR +I Sbjct: 193 ERDCLAFLARGLRPDRIGDELSIATVTVNMHIRNARYKLKATTNAHAVAKAIRLNFI 249 >gi|146276004|ref|YP_001166164.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] gi|145322695|gb|ABP64638.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] Length = 248 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 68/231 (29%), Gaps = 16/231 (6%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFP------RRQQLICELHNYDLDSGDIPNILIETY 72 + +Q A + L P + + + Sbjct: 14 ALVAEVQAAGDAAGLPFIAAQADLGDPEPMSDEDGRPYAETTFRWTDPGHEYWRDRKLAL 73 Query: 73 GDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 FL P + + G + A +A PV L Sbjct: 74 HVPFLTAARLVAEPFFYTAGTLATWRPSGLLGGVDCSGVAKSFGGEAIVA-PVHLPRGIV 132 Query: 130 GYVIFTSEFLMLANE------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G V++ S + + +A + + + + LT RE CL+ Sbjct: 133 GAVVWCSREPIGVAQVFAGKAEHFQALALRLVATHNEARGRPRNAGVPQKLTRREVQCLR 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T EI L LS TV +L +A KL A R Q+I A GY+ Sbjct: 193 WAAAGKTDGEIGIILDLSHSTVRFHLRNAAEKLGATGRAQSIQLAAGLGYV 243 >gi|23099565|ref|NP_693031.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22777795|dbj|BAC14066.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 74 Score = 98.4 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT+RE +L T++EIA++L +S TV ++ +A KL R QA+ + + Sbjct: 8 PKQLLTKREKEVFELLVQDKTTKEIAQELFISEKTVRNHISNAMQKLGVKGRSQAVVELL 67 Query: 230 RFG 232 R G Sbjct: 68 RMG 70 >gi|313636331|gb|EFS02121.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL S4-171] Length = 228 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI Sbjct: 161 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 220 Query: 230 RFGYI 234 + G++ Sbjct: 221 KHGWV 225 >gi|260426159|ref|ZP_05780138.1| autoinducer-binding transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260420651|gb|EEX13902.1| autoinducer-binding transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 255 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 12/229 (5%) Query: 11 SSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNIL 68 + +++EL L + L N+ D D+ Sbjct: 17 AGTVEELWQMHLERMA-GYGFDRLLYGFTRYRTTTSLGDPNDFVLLTNHSTDYTDVFIGQ 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFP---V 122 + + W+ + + + ++ + + G AG + V Sbjct: 76 GLYHHAPMVNWALEHEGACSWRVLAEMLAQGNVGNAERRVIDFNLGKNVRAGYSVSFKSV 135 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERET 179 + + + + + HG ++ + L L ++LT+R+ Sbjct: 136 SSRAKGAIALTAKAGTEQADVDAMWDEHGDDIILMNNVLHLKILTLPYVPPNQSLTKRQR 195 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ GDG T ++IA +GL+ T+ +L A L+ QA+AKA Sbjct: 196 EALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKA 244 >gi|22536505|ref|NP_687356.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|76788056|ref|YP_329044.1| LuxR family transcriptional regulator [Streptococcus agalactiae A909] gi|76797803|ref|ZP_00780068.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21] gi|77405005|ref|ZP_00782106.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410572|ref|ZP_00786932.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|22533337|gb|AAM99228.1|AE014206_8 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|76563113|gb|ABA45697.1| DNA-binding response regulator, LuxR family [Streptococcus agalactiae A909] gi|76586817|gb|EAO63310.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21] gi|77163287|gb|EAO74238.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77176444|gb|EAO79212.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 213 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 K + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 137 AHDKCPALHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRT 196 Query: 223 QAIAKAIRFGYI 234 QA+ A + + Sbjct: 197 QAVVYAFQHHLV 208 >gi|254464427|ref|ZP_05077838.1| response regulator receiver protein, putative [Rhodobacterales bacterium Y4I] gi|206685335|gb|EDZ45817.1| response regulator receiver protein, putative [Rhodobacterales bacterium Y4I] Length = 211 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 11/184 (5%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + Y D D + S + W+ ++ + S + Sbjct: 39 VFVHSTYAQRWVDRYVDQAYLLVDPTIQFGLSSTGWVTWKELE---RLFPSSKHFFEDAV 95 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 G + + + + I A + + S Sbjct: 96 KYGLVHGNTLAIS-ADGRVSVLSCSGPEWSDEELRIARAALYALHAL-------EYEPSH 147 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT L++ +G +EIAE LG+ + TV A +A LDA Q I++ I+ Sbjct: 148 SITLTTPVKDVLRMMCNGCKDQEIAENLGVKLETVRARRRTAMQALDAKTSAQLISQVIK 207 Query: 231 FGYI 234 FG I Sbjct: 208 FGLI 211 >gi|329929253|ref|ZP_08283011.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328936739|gb|EGG33180.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 220 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 39/97 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L ++ H + + ++ LT RE LQL G + EI+E Sbjct: 124 ELHPDAAGLLMTHVTSPAGEDEANGSSHQEAAQLNKLTRREQEVLQLIASGMNNREISEA 183 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L ++ TV ++ KL +R QA A++ G + Sbjct: 184 LYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 220 >gi|314934049|ref|ZP_07841412.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] gi|313653160|gb|EFS16919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] Length = 209 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|312863730|ref|ZP_07723968.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311101266|gb|EFQ59471.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 214 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE L L GY ++ IA +L +S+ TV ++ + KL+ +R Q Sbjct: 139 HDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQ 198 Query: 224 AIAKAIRFGYI 234 A+ A R + Sbjct: 199 AVVYAFRHHLV 209 >gi|83954970|ref|ZP_00963648.1| transcriptional regulator [Sulfitobacter sp. NAS-14.1] gi|83840696|gb|EAP79868.1| transcriptional regulator [Sulfitobacter sp. NAS-14.1] Length = 249 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 64/217 (29%), Gaps = 12/217 (5%) Query: 28 IKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 + I A D R Q H Y D D + +G Sbjct: 33 LGVTGIGYGIIPYASDATVRGFTQAGFFRHTYPQDWVTAVEEQALVDDDISVELIANGTA 92 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG------YVIFTSEFL 139 ++W Q+ LE + G + + +V T Sbjct: 93 EVLWNDASLLDDATEPQQMQSELENDIGMQFGASIALNRTPAGQAISGIGLWVSETRSDR 152 Query: 140 MLA--NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 A + +A + + + S NLT RE CL G EI Sbjct: 153 EFALYWQQHRDALRRLSFAMDEGIRRDH--MSVLVNLTPRERDCLSYLAIGLRPAEICWT 210 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S T ++ A KL A R A+AK++ G I Sbjct: 211 LKISEKTFEKHIKGAKEKLRASTRDHAVAKSLVLGLI 247 >gi|262203128|ref|YP_003274336.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262086475|gb|ACY22443.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 228 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLA 185 ++A + A ++IT+ +R + A +LT RE L L Sbjct: 120 DAPADELVRAVRVVAAGEALLAPSITRRLITEVTSRRTRRKPNPALASLTPREREVLDLV 179 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++ EI +L ++ TV ++ + KL +R QA+ A G Sbjct: 180 AEGKSNAEIGAELFVAEQTVKTHVSNVLAKLGLRDRAQAVVFAYENGL 227 >gi|251783082|ref|YP_002997385.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391712|dbj|BAH82171.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 215 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 139 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 198 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 199 QAVVYAFRHHLV 210 >gi|148654644|ref|YP_001274849.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148566754|gb|ABQ88899.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 471 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ERE L+L G T+++IA +L +S +TV +L + K+ +R +A A+ Sbjct: 5 TLPQLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAV 64 Query: 230 RFGYI 234 R G + Sbjct: 65 RNGLL 69 >gi|329117459|ref|ZP_08246176.1| response regulator receiver domain protein [Streptococcus parauberis NCFD 2020] gi|326907864|gb|EGE54778.1| response regulator receiver domain protein [Streptococcus parauberis NCFD 2020] Length = 213 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K LT RE L L GY ++ IA++L +S+ TV ++ + KLD +R Q Sbjct: 138 HDKNPELHEELTAREFDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLDVDDRTQ 197 Query: 224 AIAKAIRFGYI 234 A+ A + + Sbjct: 198 AVVYAFQHHIV 208 >gi|322387271|ref|ZP_08060881.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141800|gb|EFX37295.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 210 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + + A Q ++ +E + LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELFHAVQKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|167465455|ref|ZP_02330544.1| two-component response regulator LiaR [Paenibacillus larvae subsp. larvae BRL-230010] Length = 220 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 E + A++ I E + +T L + LT RE L L DG T+++IAE Sbjct: 120 EGIHKASQGIPEMNPEVSLALTRGLR-QRNAQPDEEGLTIREKEVLLLIADGKTNKDIAE 178 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S+ TV ++ + +K + +R Q A R G++ Sbjct: 179 ELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGWV 216 >gi|15675498|ref|NP_269672.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71911145|ref|YP_282695.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|13622694|gb|AAK34393.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71853927|gb|AAZ51950.1| two-component response regulator [Streptococcus pyogenes MGAS5005] Length = 213 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 137 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVGDRT 196 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 197 QAVVYAFRHHLV 208 >gi|226307737|ref|YP_002767697.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186854|dbj|BAH34958.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 239 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 11/213 (5%) Query: 25 QNRIKARNFALYTINSALDFPRRQQLI-CELHNYDLDSGDIPNILIETYGDDFLFHFNS- 82 ++AR A P + YD + +L + D LF Sbjct: 33 AEELRARGLAYSAAAVTYRDPSSGRHRALASSGYDARVLEF--LLDDFVADRNLFGIIRE 90 Query: 83 -GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 +P+ WQ + ++ + G + + + ++ S Sbjct: 91 ASGVPVFWQDV----PRFEQVEMVTDVLRPSGYAEGASVALGFSGREVTGLLHMSFADSG 146 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + E A + + + + +L+ RE LQL G + EIAE+L +S Sbjct: 147 VVDRVREVVAASSAACSRV--VGDQVALDRVHLSPREIQVLQLVARGAGNVEIAEELFVS 204 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + VK +R+QA +A ++G I Sbjct: 205 RRTVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237 >gi|258650732|ref|YP_003199888.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553957|gb|ACV76899.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 214 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L G+++ T+ L V A G +++ ++ + LT Sbjct: 95 LRAGAAGFLLKTTPPRDLIRSVRQCAAGETTVGPTVMARLVDSYVGHQEPPPPGLAELTG 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+ DG ++ EIA +L L+ TV ++ KL +R+QA+ A R G Sbjct: 155 RELDVLRCLADGRSNAEIAGELFLAETTVKTHVARILAKLGVRDRVQAVVIAHRCGL 211 >gi|313606801|gb|EFR83477.1| transcriptional regulatory protein DegU [Listeria monocytogenes FSL F2-208] Length = 127 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI Sbjct: 60 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 119 Query: 230 RFGYI 234 + G++ Sbjct: 120 KHGWV 124 >gi|325289912|ref|YP_004266093.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324965313|gb|ADY56092.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 212 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ G +++EI L +S TV +L + KL+ +R QA KA++ Sbjct: 148 GLSKREMEILRAVARGSSNKEIGISLYISEKTVKNHLSNIFRKLEVEDRTQAAIKAVKLN 207 Query: 233 YI 234 + Sbjct: 208 LV 209 >gi|195978655|ref|YP_002123899.1| TCS response regulator YvqC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975360|gb|ACG62886.1| TCS response regulator YvqC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 197 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ LT RE L L GY ++ IA++L +S+ TV ++ + KL +R Sbjct: 121 AHDQQPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRT 180 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 181 QAVVYAFRHHLV 192 >gi|149182664|ref|ZP_01861132.1| two-component response regulator [Bacillus sp. SG-1] gi|148849633|gb|EDL63815.1| two-component response regulator [Bacillus sp. SG-1] Length = 216 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + +++ +LT RE L+ G+G T++EI+++L + V T ++ + KL Sbjct: 135 MMNRFRPQERKL--HEDLTTRELEVLKCLGEGMTNQEISDELFIGVKTTKTHVSNILSKL 192 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA A R G + Sbjct: 193 GVADRTQAAIYANRNGIL 210 >gi|156742230|ref|YP_001432359.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233558|gb|ABU58341.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 254 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 38/77 (49%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D L + L++RE L+ G ++ EIAE L +S TV ++ S KL Sbjct: 157 QDVTSLQEMEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLS 216 Query: 218 AVNRIQAIAKAIRFGYI 234 +R QA+ A+R G+I Sbjct: 217 LNDRTQAVLYALRRGWI 233 >gi|116873879|ref|YP_850660.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742757|emb|CAK21881.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 228 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI Sbjct: 161 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 220 Query: 230 RFGYI 234 + G++ Sbjct: 221 KHGWV 225 >gi|147669585|ref|YP_001214403.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270533|gb|ABQ17525.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 232 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE--LFKKRSSAARNL 174 L YV+ S L V G + I ++E L Sbjct: 94 LRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|282895907|ref|ZP_06303947.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281199152|gb|EFA74021.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 240 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 44/74 (59%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + ++ + LT+RE L+L DG ++ +IAEKL ++V TV ++ + KL A + Sbjct: 166 LAIEYEQVLESSPLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADD 225 Query: 221 RIQAIAKAIRFGYI 234 R QA +A+R G + Sbjct: 226 RTQAAVRALRSGLV 239 >gi|229493950|ref|ZP_04387722.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229319227|gb|EEN85076.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length = 239 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 7/211 (3%) Query: 25 QNRIKARNFALYTINSALDFPRRQQLI-CELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 ++AR A P + YD + + F + Sbjct: 33 AEELRARGLAYSAAAVTYRDPSTGRHRALASSGYDARVLEFLLEDFVADRNLFGIIREAS 92 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 +P+ WQ + ++ + G + + + ++ S Sbjct: 93 GVPVFWQDV----PRFEQVEMVTDVLRPSGYAEGASVALGFSGREVTGLLHMSFADSGVV 148 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + + E A + + + + +L+ RE LQL G + EIAE+L +S Sbjct: 149 DRVREVVAASSAACSRV--VGDQVALDRVHLSPREIQVLQLVARGAGNVEIAEELFVSRR 206 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + VK +R+QA +A ++G I Sbjct: 207 TVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237 >gi|229011537|ref|ZP_04168723.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749692|gb|EEL99531.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 211 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|158338160|ref|YP_001519337.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308401|gb|ABW30018.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 238 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L+L G ++ IA+KL +SV TV ++ S KL A +R QA +A+R Sbjct: 174 TEPLTDRELEVLELIVAGCSNAVIADKLYISVGTVKTHVRSILNKLCADDRTQAAVRALR 233 Query: 231 FGYI 234 G + Sbjct: 234 SGLV 237 >gi|322412404|gb|EFY03312.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 213 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 137 AHDQHPDLHEELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 196 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 197 QAVVYAFRHHLV 208 >gi|289432845|ref|YP_003462718.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|288946565|gb|ADC74262.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 232 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE--LFKKRSSAARNL 174 L YV+ S L V G + I ++E L Sbjct: 94 LRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|225868023|ref|YP_002743971.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225701299|emb|CAW98303.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 213 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ LT RE L L GY ++ IA++L +S+ TV ++ + KL +R Sbjct: 137 AHDQQPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRT 196 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 197 QAVVYAFRHHLV 208 >gi|298490276|ref|YP_003720453.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298232194|gb|ADI63330.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 240 Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L ++ LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A Sbjct: 164 EALATEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCA 223 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA +A+R G + Sbjct: 224 DDRTQAAVRALRSGLV 239 >gi|320159841|ref|YP_004173065.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993694|dbj|BAJ62465.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 214 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN--LTERET 179 NGY++ +E L ++ A G +V+ L + ++ + + L++RE Sbjct: 98 RAGANGYILKNTEPEDLRKALLNIAEGKGVLSPEVVPPVLGVMQRGTLDSSPQLLSDREL 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ +G T+++IA +L +S +TV ++ KL+A NR +A+ KA + G + Sbjct: 158 EVLQCLAEGLTTQQIASRLFISENTVKTHIRHILDKLEASNRTEAVGKATQLGIL 212 >gi|296268760|ref|YP_003651392.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091547|gb|ADG87499.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 234 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 157 ITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +R A LTERE L+L G + EIA+ L +S +TV ++ + Sbjct: 152 FQTLSRREAERPPQVPAPRLTEREMEVLRLVAKGMHNREIAKALFISENTVKNHVRNILD 211 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R++A+ A+R + Sbjct: 212 KLQLHSRMEAVVYAVRERLL 231 >gi|259505660|ref|ZP_05748562.1| two component system response regulator [Corynebacterium efficiens YS-314] gi|259166742|gb|EEW51296.1| two component system response regulator [Corynebacterium efficiens YS-314] Length = 212 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPNELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGLL 212 >gi|126649458|ref|ZP_01721699.1| YhcZ [Bacillus sp. B14905] gi|169825964|ref|YP_001696122.1| two-component response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|126593783|gb|EAZ87706.1| YhcZ [Bacillus sp. B14905] gi|168990452|gb|ACA37992.1| two-component response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 215 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H + + + + LT RE L G ++ EIA L ++ TV + Sbjct: 125 LHPEATTTLEMDRQEAQNAPHSLNPLTPREQDVLAELTKGKSNREIASSLFVTEKTVKTH 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + + KL +R QA A++ G Sbjct: 185 ISNIFTKLQVQDRTQAALYAVKHGL 209 >gi|15616190|ref|NP_244495.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] gi|10176252|dbj|BAB07347.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] Length = 236 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DGY++ I E L +S TV ++ + K++ +R QA+ ++I Sbjct: 169 PLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESI 228 Query: 230 RFGYI 234 + G++ Sbjct: 229 KNGWV 233 >gi|1706361|sp|P54662|DEGU_BREBE RecName: Full=Transcriptional regulatory protein degU gi|710496|gb|AAC41439.1| transcriptional activator protein [Brevibacillus brevis] Length = 236 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DGY++ I E L +S TV ++ + K++ +R QA+ ++I Sbjct: 169 PLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESI 228 Query: 230 RFGYI 234 + G++ Sbjct: 229 KNGWV 233 >gi|323127832|gb|ADX25129.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 213 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 137 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 196 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 197 QAVVYAFRHHLV 208 >gi|315647821|ref|ZP_07900922.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315276467|gb|EFU39810.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 222 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 12/108 (11%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAA------------RNLTERETSCLQLAG 186 + + ++E H ++ + L + S++ LT RE LQL Sbjct: 115 IRRVFQGMVELHPDAAGLLMTHVTLPEGAESSSGPGRQEEAVQELDKLTRREQEVLQLIA 174 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EI+E L ++ TV ++ KL +R QA A++ G + Sbjct: 175 SGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 222 >gi|251799449|ref|YP_003014180.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547075|gb|ACT04094.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 220 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 35/69 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + + LTERE L L G G ++EIA L L+ TV ++ + KL +R Sbjct: 150 LGAQEPAELKQLTEREKEVLALLGQGLNNKEIAGSLFLTEGTVKNHVSNVIAKLGLRDRT 209 Query: 223 QAIAKAIRF 231 QA A+R Sbjct: 210 QAAIYAVRH 218 >gi|81428980|ref|YP_395980.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78610622|emb|CAI55673.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 199 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L L G +++EIA++L +++ TV ++ + KL +R QA AI+ Sbjct: 136 EDLTNREREVLGLVAKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKH 195 Query: 232 GY 233 Sbjct: 196 QL 197 >gi|294501457|ref|YP_003565157.1| spore germination regulator [Bacillus megaterium QM B1551] gi|295706805|ref|YP_003599880.1| spore germination regulator [Bacillus megaterium DSM 319] gi|294351394|gb|ADE71723.1| spore germination regulator [Bacillus megaterium QM B1551] gi|294804464|gb|ADF41530.1| spore germination regulator [Bacillus megaterium DSM 319] Length = 74 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +K LT+RE +L T++EIA +L +S TV ++ +A KL R Sbjct: 1 MKEKEFQPKPLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRS 60 Query: 223 QAIAKAIRFG 232 QA+ + +R G Sbjct: 61 QAVVELLRMG 70 >gi|225871059|ref|YP_002747006.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225700463|emb|CAW94880.1| response regulator protein [Streptococcus equi subsp. equi 4047] Length = 213 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ + LT RE L L GY ++ IA++L +S+ TV ++ + KL +R Sbjct: 137 AHDQQPNLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRT 196 Query: 223 QAIAKAIRFGYI 234 QA+ A R + Sbjct: 197 QAVVYAFRHHLV 208 >gi|322373351|ref|ZP_08047887.1| DNA-binding response regulator VraR [Streptococcus sp. C150] gi|321278393|gb|EFX55462.1| DNA-binding response regulator VraR [Streptococcus sp. C150] Length = 214 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE L L GY ++ IA +L +S+ TV ++ + KL+ +R Q Sbjct: 139 HDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQ 198 Query: 224 AIAKAIRFGYI 234 A+ A R + Sbjct: 199 AVVYAFRHHLV 209 >gi|251799733|ref|YP_003014464.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547359|gb|ACT04378.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 242 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ ++I++G Sbjct: 179 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVIQSIKYG 238 Query: 233 YI 234 ++ Sbjct: 239 WV 240 >gi|296132074|ref|YP_003639321.1| transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296030652|gb|ADG81420.1| transcriptional regulator, LuxR family [Thermincola potens JR] Length = 232 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 41/84 (48%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A ++ + + LT RE L+L GYT+ +IA+KL +SV+TV + Sbjct: 127 ADSLIPDMMNRLSASLQVKPEKEILLTPREQEILELLAQGYTNGQIAKKLIISVNTVKNH 186 Query: 209 LGSATVKLDAVNRIQAIAKAIRFG 232 + + KL NR + ++ A+ G Sbjct: 187 VHNILEKLGVSNRAKLVSYAMSRG 210 >gi|25010384|ref|NP_734779.1| hypothetical protein gbs0310 [Streptococcus agalactiae NEM316] gi|77408096|ref|ZP_00784843.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77413304|ref|ZP_00789499.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|23094736|emb|CAD45955.1| unknown [Streptococcus agalactiae NEM316] gi|77160618|gb|EAO71734.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77173280|gb|EAO76402.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 213 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 K + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 137 AHDKCPALHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRT 196 Query: 223 QAIAKAIRFGYI 234 QA+ A + + Sbjct: 197 QAVVYAFQHHLV 208 >gi|53716990|ref|YP_105811.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53721704|ref|YP_110689.1| GerR family regulatory protein [Burkholderia pseudomallei K96243] gi|126457399|ref|YP_001074949.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|217419285|ref|ZP_03450792.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226195037|ref|ZP_03790628.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|242311517|ref|ZP_04810534.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254179205|ref|ZP_04885857.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254262387|ref|ZP_04953252.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254299972|ref|ZP_04967418.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|52212118|emb|CAH38134.1| GerR family regulatory protein [Burkholderia pseudomallei K96243] gi|52422960|gb|AAU46530.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|126231167|gb|ABN94580.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|157809957|gb|EDO87127.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|160694532|gb|EDP84542.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|217398589|gb|EEC38604.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225932842|gb|EEH28838.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|242134756|gb|EES21159.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254213389|gb|EET02774.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 296 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 78 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 135 Query: 84 LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W Q + G +R+ +G+ + + + + FT+ Sbjct: 136 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 195 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 196 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 254 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 255 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 296 >gi|228477324|ref|ZP_04061962.1| DNA-binding response regulator [Streptococcus salivarius SK126] gi|228251343|gb|EEK10514.1| DNA-binding response regulator [Streptococcus salivarius SK126] Length = 214 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE L L GY ++ IA +L +S+ TV ++ + KL+ +R Q Sbjct: 139 HDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQ 198 Query: 224 AIAKAIRFGYI 234 A+ A R + Sbjct: 199 AVVYAFRHHLV 209 >gi|158320230|ref|YP_001512737.1| two component LuxR family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140429|gb|ABW18741.1| two component transcriptional regulator, LuxR family [Alkaliphilus oremlandii OhILAs] Length = 224 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L +G ++EI + L +S TV ++ + K++ +R QA A + Sbjct: 160 DELTRREYEVLTLLAEGINNKEIGDCLFISEKTVKNHVSNIFKKINVNDRTQAAIYAYKH 219 Query: 232 GY 233 Sbjct: 220 NI 221 >gi|73748824|ref|YP_308063.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660540|emb|CAI83147.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] Length = 232 Score = 98.0 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE--LFKKRSSAARNL 174 L YV+ S L V G + I ++E L Sbjct: 94 LRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|225377710|ref|ZP_03754931.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM 16841] gi|225210459|gb|EEG92813.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM 16841] Length = 186 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 7/126 (5%) Query: 110 GGLLPFAGIAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 ++ +G PV + G F ++ + +++ L + Sbjct: 63 QRVVILSGYDLPVYRSEGRKIGAKGFVNKNIEPEK-----LISILSKIMQGILYFD-REI 116 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+ E +QL +G ++IA L +S T++ +L KLD + ++A+ KA Sbjct: 117 PFIEGLTDSEKQIIQLIAEGQKRKDIASTLYISERTLSNHLQHIFEKLDVTSAVEAVTKA 176 Query: 229 IRFGYI 234 I+ GYI Sbjct: 177 IQLGYI 182 >gi|326381529|ref|ZP_08203223.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199776|gb|EGD56956.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 209 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAG 186 ++A + A ++I +K ++AA +LT RE L Sbjct: 102 DAPADELVRAVRVVAAGDALLAPSVTKRLIEQVTSRTTRKATAAAESLTPRELEVLLTVA 161 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++ EIA++L +S TV ++ + KL +R QA+ A G Sbjct: 162 DGKSNGEIADELFVSEQTVKTHVSNMLTKLGLRDRAQAVVFAYENGL 208 >gi|319744296|gb|EFV96660.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 217 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 K + LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R Sbjct: 141 AHDKCPALHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRT 200 Query: 223 QAIAKAIRFGYI 234 QA+ A + + Sbjct: 201 QAVVYAFQHHLV 212 >gi|305673633|ref|YP_003865305.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411877|gb|ADM36996.1| two-component response regulator (paired with YhcY) [Bacillus subtilis subsp. spizizenii str. W23] Length = 215 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V+T LT RE L +G +++EIA L +S TV ++ Sbjct: 127 AIMPHVLTHMRNQHDPEKEKIYQLTRREKDVLNEIANGKSNKEIAAALFISEKTVKTHVS 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL+ +R QA A+++ Sbjct: 187 NLLAKLEVADRTQAALFAVKYNL 209 >gi|238926042|ref|YP_002939560.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|238877719|gb|ACR77426.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|291526556|emb|CBK92143.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale DSM 17629] gi|291529198|emb|CBK94784.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale M104/1] Length = 214 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+ G + +IA+++ +S TV ++ S KL+ +R QA AIR Sbjct: 149 DALTKREMEVLKEMAVGKFNRDIAKEMKISERTVKNHISSIFKKLEVTDRTQAAVFAIRN 208 Query: 232 GYI 234 I Sbjct: 209 NII 211 >gi|254412403|ref|ZP_05026177.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180713|gb|EDX75703.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 271 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L+L G ++ IAEKL ++V TV ++ + KL +R QA A+R Sbjct: 207 AYPLTERELEVLELIVAGASNAAIAEKLYITVGTVKTHVRNILNKLCVDDRTQAAVHALR 266 Query: 231 FGYI 234 G I Sbjct: 267 SGLI 270 >gi|219849240|ref|YP_002463673.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543499|gb|ACL25237.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 7/98 (7%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAE 196 +V++E ++++ F L + ++ A L+ERE L+ G +++EIA+ Sbjct: 137 DVLMEEPRIAGRILSQFRNLPEVQTLADDLGIQIFTPLSEREIEVLERIAAGSSNKEIAD 196 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TV ++ S KL +R QA+ A+R G+I Sbjct: 197 ALGISTQTVKNHISSILRKLSLNDRTQAVIFALRRGWI 234 >gi|297199099|ref|ZP_06916496.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297147291|gb|EDY59218.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 224 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%) Query: 151 GACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G V+ ++ L + A+ LTERET L+L G + ++IAE+L +S Sbjct: 132 GLAGLVLGEYRRLASDPAPASDPDRPRAPELTERETEVLRLVAKGLSYKQIAERLVISHR 191 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 192 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 221 >gi|83943587|ref|ZP_00956046.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. EE-36] gi|83845819|gb|EAP83697.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. EE-36] Length = 249 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 65/217 (29%), Gaps = 12/217 (5%) Query: 28 IKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 + I A D R Q H Y D D + +G Sbjct: 33 LGVTGIGYGIIPYASDATVRGFTQAGFFRHTYPQDWVTAVEEQALVDDDISVELIANGTK 92 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKN-----GYVIFTSEFL 139 ++W Q+ LE + G +F + R + +V T Sbjct: 93 EVLWNDTSLLDHATEPQQMQSELENDIGMQFGASFALTRTPAGQAISGIGLWVSETRSDR 152 Query: 140 MLA--NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A + + + S NLT RE CL G EI Sbjct: 153 EFDLYWQQHRSALRRLSFAMDEGIRRDH--MSVLVNLTPRERDCLSYLAIGLRPAEICWT 210 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S T ++ A KL A R A+AK++ G I Sbjct: 211 LKISEKTFEKHIKGAKEKLRASTRDHAVAKSMVLGLI 247 >gi|297622897|ref|YP_003704331.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164077|gb|ADI13788.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 508 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 84/237 (35%), Gaps = 18/237 (7%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALD--FPRRQQLICELHNYDLDSG--DIPNILIET 71 ++ R +AR F ++ + ++++ L +L + Sbjct: 271 DVQKRALEALRESEARFFTVFHAGPVAACITALATRHFVDVNDAFLALTGFSREEVLGRS 330 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHK 128 + L+ Q+ +E E+ L +RL I +R G + Sbjct: 331 ARELGLWATQPSERGASCQAGAQEPPPEAFRNLELRLRTKTGEVRDILISGEVLRFGDER 390 Query: 129 NGYVIF--TSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS--SAARNLTER 177 +F +E ++ QV+ ++ ++ SA L++R Sbjct: 391 GQLKLFYDITERKQTEEQLHRALQEVMSDTAWFSSQVLERLSQVRARKLERSALVTLSKR 450 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ G ++E IA +LGL+ TV Y+ + KL +R +A+ A G I Sbjct: 451 ERQVLERLARGKSNEAIAAELGLATQTVRNYISAVYDKLGVRSRAEAVVWARERGVI 507 >gi|55823331|ref|YP_141772.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|116628130|ref|YP_820749.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|55739316|gb|AAV62957.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus CNRZ1066] gi|116101407|gb|ABJ66553.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278734|gb|ADQ63391.1| Two-component response transcriptional regulator (CheY-like receiver and HTH DNA-binding domains), putative [Streptococcus thermophilus ND03] Length = 214 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 146 HDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFR 205 Query: 231 FGYI 234 + Sbjct: 206 HHLV 209 >gi|289435776|ref|YP_003465648.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172020|emb|CBH28566.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313631967|gb|EFR99092.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL N1-067] Length = 228 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI Sbjct: 161 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 220 Query: 230 RFGYI 234 + G++ Sbjct: 221 KHGWV 225 >gi|16801720|ref|NP_471988.1| hypothetical protein lin2659 [Listeria innocua Clip11262] gi|16804553|ref|NP_466038.1| hypothetical protein lmo2515 [Listeria monocytogenes EGD-e] gi|46908687|ref|YP_015076.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47093717|ref|ZP_00231469.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|47096108|ref|ZP_00233709.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|217963383|ref|YP_002349061.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224499869|ref|ZP_03668218.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224503244|ref|ZP_03671551.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226225063|ref|YP_002759170.1| two-component response regulator DegU [Listeria monocytogenes Clip81459] gi|254825362|ref|ZP_05230363.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|254828090|ref|ZP_05232777.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|254831062|ref|ZP_05235717.1| two-component response regulator DegU [Listeria monocytogenes 10403S] gi|254853956|ref|ZP_05243304.1| DegU [Listeria monocytogenes FSL R2-503] gi|254900347|ref|ZP_05260271.1| two-component response regulator DegU [Listeria monocytogenes J0161] gi|254913414|ref|ZP_05263426.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|254932243|ref|ZP_05265602.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|254937795|ref|ZP_05269492.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|254993056|ref|ZP_05275246.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-064] gi|255030722|ref|ZP_05302673.1| two-component response regulator DegU [Listeria monocytogenes LO28] gi|255521855|ref|ZP_05389092.1| two-component response regulator DegU [Listeria monocytogenes FSL J1-175] gi|284802953|ref|YP_003414818.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284996094|ref|YP_003417862.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290892678|ref|ZP_06555670.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|300764985|ref|ZP_07074973.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|16412003|emb|CAD00593.1| lmo2515 [Listeria monocytogenes EGD-e] gi|16415195|emb|CAC97885.1| lin2659 [Listeria innocua Clip11262] gi|46881959|gb|AAT05253.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47015569|gb|EAL06501.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|47017911|gb|EAL08692.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|50313181|gb|AAT74538.1| DegU [Listeria monocytogenes] gi|217332653|gb|ACK38447.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225877525|emb|CAS06239.1| Putative two-component response regulator DegU [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600475|gb|EEW13800.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|258607345|gb|EEW19953.1| DegU [Listeria monocytogenes FSL R2-503] gi|258610399|gb|EEW23007.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|284058515|gb|ADB69456.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284061561|gb|ADB72500.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290557738|gb|EFD91260.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|293583800|gb|EFF95832.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|293591421|gb|EFF99755.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|293594605|gb|EFG02366.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|300514285|gb|EFK41344.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|307572042|emb|CAR85221.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313617172|gb|EFR89687.1| transcriptional regulatory protein DegU [Listeria innocua FSL S4-378] gi|313622371|gb|EFR92844.1| transcriptional regulatory protein DegU [Listeria innocua FSL J1-023] gi|328465121|gb|EGF36389.1| hypothetical protein LM1816_15707 [Listeria monocytogenes 1816] gi|328471125|gb|EGF42029.1| hypothetical protein LM220_09715 [Listeria monocytogenes 220] gi|332312945|gb|EGJ26040.1| Transcriptional regulatory protein degU [Listeria monocytogenes str. Scott A] Length = 228 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI Sbjct: 161 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 220 Query: 230 RFGYI 234 + G++ Sbjct: 221 KHGWV 225 >gi|194291999|ref|YP_002007906.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG 19424] gi|193225903|emb|CAQ71850.1| putative transcriptional regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 333 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 68/218 (31%), Gaps = 13/218 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNY-DLDSGDIPNILIETYGDDFLFHFNS 82 +Q+ I+A F +A + Q +Y + D + Sbjct: 92 MQSAIRAIGFDWLGYATAAHVGGQLQPRTFFESYSPPGWRERYFRERYYEIDPRTPQPGT 151 Query: 83 GLLPIIWQSIQEET-----VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 LP +W + V + + +GI + + + +I Sbjct: 152 FCLPTVWDADDLAQTPLGNVPPLRRRRFLEDLRDAGVRSGIFLNLPMPGNNEFVLISFMS 211 Query: 138 FLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + A ++ +T +E+ L++ + L G + Sbjct: 212 GIESRRWIGDSVVGQALAMGLALHEFLTCHVEIPAFAGRHREGLSDVQRDILACLAQGLS 271 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +EIA ++ +S+ V+ ++ NR+Q + A Sbjct: 272 DKEIARRMDMSIFNVDYHMRRLRSHFGVRNRVQLASAA 309 >gi|159897838|ref|YP_001544085.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890877|gb|ABX03957.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 206 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 48/113 (42%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR G + L A +I + +I L +R + LT RE Sbjct: 94 VRAGAQGYLLKGAPRDELFAAIRLIHAGGSTLHPLIASKLLRQVQRDTTLVELTPREHEV 153 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G+ +++IA +L ++ TV +L S KL A NR +A+A A I Sbjct: 154 LQHLAQGFANKQIAYQLNITERTVKFHLNSIFQKLGAHNRTEAVAIAYERQLI 206 >gi|254442705|ref|ZP_05056181.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257013|gb|EDY81321.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G +++EIA +L L TV +L + KL +R QAI A++ G Sbjct: 136 QLTKRELEVLAQVAKGRSNKEIANELNLVEGTVKVHLTNILSKLGVSDRTQAILAAVKRG 195 Query: 233 YI 234 I Sbjct: 196 LI 197 >gi|238563430|ref|ZP_00438873.2| transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254189698|ref|ZP_04896207.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254204651|ref|ZP_04911004.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|147754237|gb|EDK61301.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|157937375|gb|EDO93045.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|238520698|gb|EEP84156.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] Length = 291 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 73 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 130 Query: 84 LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W Q + G +R+ +G+ + + + + FT+ Sbjct: 131 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 190 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 191 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 249 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 250 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 291 >gi|328552560|gb|AEB23052.1| two-component response regulator (YhcY) [Bacillus amyloliquefaciens TA208] gi|328910960|gb|AEB62556.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 214 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 148 QLTPREKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYN 207 Query: 233 Y 233 Sbjct: 208 I 208 >gi|307150230|ref|YP_003885614.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] gi|306980458|gb|ADN12339.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 237 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 8/178 (4%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 D + D L + P + + L Sbjct: 57 GLPDSFVDRYEKIGRQ-VDPVLKYVIERHAPAH-EQLLLTQEQWKQSLLYQNCCSSFDHE 114 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSA--- 170 + P+ G V F A + ++ C + + Sbjct: 115 HIMTGPIVGQGQLIGTVHFARIRETSAFNIDDLMFLSAICTHFSANLARINSPDPQLTSD 174 Query: 171 -ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A+ LT RE + L G T+ EI ++L ++ ++V L KLD +R Q +AK Sbjct: 175 WAKKLTSRELQIISLVAQGLTNTEIGQELWITQNSVKQALKRIFRKLDVRSRAQMVAK 232 >gi|223044000|ref|ZP_03614040.1| response regulator protein VraR [Staphylococcus capitis SK14] gi|222442543|gb|EEE48648.1| response regulator protein VraR [Staphylococcus capitis SK14] Length = 209 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|320160284|ref|YP_004173508.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994137|dbj|BAJ62908.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 216 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 136 SEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E + A H +++ + ++ + LTERE L+ G ++ EI Sbjct: 114 GEAIRAAARGEAVLHPQVAARLVKEMRGTPAEKPNPYTALTEREQEVLKCIAQGMSNAEI 173 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L +S TV ++ + KL +R QA A + G I Sbjct: 174 AAHLVVSEKTVKGHVSNILSKLHLADRTQAAIYAWKEGLI 213 >gi|229196490|ref|ZP_04323234.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228586846|gb|EEK44920.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 214 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207 >gi|261407454|ref|YP_003243695.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927546|ref|ZP_08281731.1| putative nitrate/nitrite response regulator protein NarL [Paenibacillus sp. HGF5] gi|261283917|gb|ACX65888.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328938415|gb|EGG34804.1| putative nitrate/nitrite response regulator protein NarL [Paenibacillus sp. HGF5] Length = 219 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + LT RE L L +G ++ +I+ L +S +TV +L + KL NR+Q Sbjct: 145 DKPDPSKSPLTAREKEILGLVAEGLSNRDISSDLCISENTVKNHLKNILQKLHLENRVQL 204 Query: 225 IAKAIRFGY 233 A G+ Sbjct: 205 TRYAFEQGW 213 >gi|163735305|ref|ZP_02142740.1| hypothetical protein RLO149_07117 [Roseobacter litoralis Och 149] gi|161391519|gb|EDQ15853.1| hypothetical protein RLO149_07117 [Roseobacter litoralis Och 149] Length = 317 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 69/227 (30%), Gaps = 15/227 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L+ELS + +NFA++ ++ + ++ H+ + Y Sbjct: 37 LEELSELMWRAATSTGFQNFAIFVLHQGQGSSFKSRICTSFHD---EWIARYIQSNYQYV 93 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + ++ + + E + G+ FP+ V Sbjct: 94 DPVMSKASISDDWFLYSDL--AGTAPAVECFWRDAEKHRIGRNGVCFPMTRSDGTRVAVS 151 Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 FT+ A E + + + F S LT E L + Sbjct: 152 FTTLNTNTAVEEAVRLNGYDLRFIAESAVDAFCYAASDSSLENDTLTVDELRFLHVLA-- 209 Query: 189 YTSEEIAEKLGL--SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TS + E L + S + + S KL QA+A A + Sbjct: 210 -TSADPEEALKITPSFGSNKSLQVSIRKKLSVDTVYQAVAIAASRNW 255 >gi|170724598|ref|YP_001758624.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169809945|gb|ACA84529.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 238 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + +++L L + +A A N + + N LD+ N Sbjct: 18 TLQHNTTLGSRQLLLDKLMEMFRADYGASCCWNPNEKYYQE----GVFSNMSLDNISKYN 73 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + D + + + + G+ + G Sbjct: 74 D-YYQFHDPITNKLRQFRRAVAVSEVISRDQLI-QTEFYNDFLQRDGLSFGVNLHIYCGQ 131 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-----TERETSC 181 V +V H ++ +L +R +L T+RE Sbjct: 132 EHVFDVRLWRSQQQGDFDVK---HLNQLDLLLPYLRAMGEREPLKESLSFNLFTQRELEV 188 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + G + +A + +SV T+ +++ S K D +R + I+K Sbjct: 189 ISQIKSGMNDKNMARTMNVSVTTLRSHIRSIYKKADVHSRTELISK 234 >gi|256396690|ref|YP_003118254.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362916|gb|ACU76413.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 40/71 (56%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S+A LT+RE L+L G + EIA++L ++ +TV ++ + KL+ +R++ Sbjct: 152 APGPVSSAPKLTDREMEVLKLVATGRNNREIAKELFITENTVKNHVRNILEKLNLHSRME 211 Query: 224 AIAKAIRFGYI 234 A+ A+R + Sbjct: 212 AVVYAVREKLL 222 >gi|121533453|ref|ZP_01665281.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] gi|121308012|gb|EAX48926.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] Length = 225 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL G ++ EIA+KL LS TV +L + K++ +R QA+ AIR Sbjct: 159 ERLTYRELEVLQLVAQGLSNSEIAQKLYLSEKTVKNHLTNIFRKINVTDRTQALIYAIRH 218 Query: 232 GYI 234 + Sbjct: 219 KIV 221 >gi|15599074|ref|NP_252568.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAO1] gi|107103394|ref|ZP_01367312.1| hypothetical protein PaerPA_01004464 [Pseudomonas aeruginosa PACS2] gi|116051915|ref|YP_789242.1| transcriptional regulator NarL [Pseudomonas aeruginosa UCBPP-PA14] gi|218889841|ref|YP_002438705.1| transcriptional regulator NarL [Pseudomonas aeruginosa LESB58] gi|254236778|ref|ZP_04930101.1| two-component response regulator NarL [Pseudomonas aeruginosa C3719] gi|254242570|ref|ZP_04935892.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192] gi|296387604|ref|ZP_06877079.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAb1] gi|313109299|ref|ZP_07795267.1| two-component response regulator NarL [Pseudomonas aeruginosa 39016] gi|9950059|gb|AAG07266.1|AE004805_4 two-component response regulator NarL [Pseudomonas aeruginosa PAO1] gi|115587136|gb|ABJ13151.1| putative nitrate/nitrite response regulator; NarL [Pseudomonas aeruginosa UCBPP-PA14] gi|126168709|gb|EAZ54220.1| two-component response regulator NarL [Pseudomonas aeruginosa C3719] gi|126195948|gb|EAZ60011.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192] gi|218770064|emb|CAW25826.1| two-component response regulator NarL [Pseudomonas aeruginosa LESB58] gi|310881769|gb|EFQ40363.1| two-component response regulator NarL [Pseudomonas aeruginosa 39016] Length = 219 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154 L + + F V V+ + E ++E Sbjct: 76 LRALREAGVDARIVVFTVSDDKGDVVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTL 135 Query: 155 -----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q++ L RS + LTERE L+ GY+++ IA KL ++ TV ++ Sbjct: 136 SPQLTQILAQALRGD-DRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHV 194 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL +R++A A+ + Sbjct: 195 KRVLHKLGMRSRVEAAVWAVENDLV 219 >gi|332523307|ref|ZP_08399559.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332314571|gb|EGJ27556.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 213 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ Sbjct: 142 PDLHEELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVY 201 Query: 228 AIRFGYI 234 A R + Sbjct: 202 AFRHHLV 208 >gi|238782956|ref|ZP_04626984.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] gi|238716159|gb|EEQ08143.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] Length = 244 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 52/188 (27%), Gaps = 15/188 (7%) Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + Y D + + + P W + G F Sbjct: 53 WFEFYTKNNFQYIDPIIITASHRVTPFSWDENIM-INSGLKLPKIFDVAKEYDVINGHTF 111 Query: 121 PVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDF-------------LELFKK 166 + ++ + ++ E I A Q++ Sbjct: 112 VLHDQYYNLTILSLMTDKDCDEDIEDKIANDKANIQMLLMLIHEKLTSFYNDLNRSSDFC 171 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + T+RE + A G + EIA LG+ TV ++G KL N AI+ Sbjct: 172 KMGRNEIFTKRENEIIYWASVGKSYPEIALILGIKPTTVKHHMGKVVRKLGVTNAKHAIS 231 Query: 227 KAIRFGYI 234 A+ I Sbjct: 232 LAVELQLI 239 >gi|17158658|ref|NP_478169.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|17134607|dbj|BAB77165.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 240 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 13/224 (5%) Query: 11 SSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +SS+ +L + ++++ +Y + A QQ L D + + Sbjct: 15 ASSVNQLCGHYMDAAGELFGSQHWGIYIHDWAG-----QQGTIHLQGLPDSFIDYYSKVG 69 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + P Q I E + S + + P+ Sbjct: 70 AAL-DKVMEYVVCHHAPAHEQIIFTEATWKQSELYQIGCGKIYDHEHIMTGPIVGEGRLI 128 Query: 130 GYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQ 183 G V F + +++ C + L + +LT RE Sbjct: 129 GTVQFARTSGNPAYNTQDLLQLSAICAHLSAKLALLRSQHELFVPKPEISLTPRELQMAA 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L G T+ EIA +L +S +TV L KLD R + +A+ Sbjct: 189 LVAKGLTNAEIAAELWISQNTVKQTLKRIFRKLDVSARAEMVAR 232 >gi|159040348|ref|YP_001539601.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157919183|gb|ABW00611.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 219 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%) Query: 149 AHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 A +V + + R A LT RE L+L DG ++ EIA L +S Sbjct: 127 AALLAPEVTRQLVGRYAARIRPAEDSSSEIPLTPRELEVLRLIADGLSNSEIAATLVISQ 186 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ KLD +R+QA+ A R G + Sbjct: 187 ETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218 >gi|302533992|ref|ZP_07286334.1| two-component system response regulator [Streptomyces sp. C] gi|302442887|gb|EFL14703.1| two-component system response regulator [Streptomyces sp. C] Length = 233 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 35/232 (15%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + A F + R+ LD G Sbjct: 22 VDDHPMWRDAVARDLAAAGFDVVATAGDGPEAVRRARAAAPRVLVLDLN--------LPG 73 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ + L V + A + V+ G + Sbjct: 74 MPGVQVCKE--------------LVGADPALRVLVLSASGEHADVLEAVKSGATGY-LLK 118 Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAAR------NLTERETSC 181 ++ A G V+ ++ L + AA LT+RET Sbjct: 119 SAGAQELIDAVRRTAAGDPVFTPGLAGLVLGEYRRLATDPAPAAPDVPKAPQLTDRETEV 178 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 179 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 230 >gi|322391513|ref|ZP_08064982.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145596|gb|EFX40988.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 210 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ T+ L A + A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTASADELLHAVRKVAAGEFAIEQEVSKKVEYNRNHVELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205 >gi|86739750|ref|YP_480150.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566612|gb|ABD10421.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 238 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + R A LT RE L+L +G + EIA KL +S +TV ++ + K Sbjct: 157 FATMARGTEDRPRAHAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDK 216 Query: 216 LDAVNRIQAIAKAIRFGY 233 L +R++A+ A+R G Sbjct: 217 LQLHSRMEAVMYAVRQGL 234 >gi|315304744|ref|ZP_07874927.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] gi|313626888|gb|EFR95838.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] Length = 228 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 13/97 (13%) Query: 151 GACYQVITDFLELFKKRSS-------------AARNLTERETSCLQLAGDGYTSEEIAEK 197 ++I ++ L ++ LT RE LQL DG ++ I E Sbjct: 129 RVAIKLIREYRHLASTNAAQGVYGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGET 188 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S TV ++ S K+ +R QA+ AI+ G++ Sbjct: 189 LFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGWV 225 >gi|297160220|gb|ADI09932.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 213 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL-ELFKKRSSAARNLTERETSC 181 GY++ + L V A G V++ + + + L+ RE Sbjct: 100 AGATGYLLKDAPRDELFTAVRAAAEGRTVLSPAVVSRLVGAVRNPATPTVEVLSAREREV 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L +S TV +L KL +R A+A A G + Sbjct: 160 LELVAKGTSNREIARELFISEATVKTHLTHLYRKLGVKDRAAAVAVAYDRGIL 212 >gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 209 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K+ + LT+RE LQ G +++EIA +L ++ TV ++ + KL+ +R Sbjct: 137 RSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDR 196 Query: 222 IQAIAKAIRFG 232 QA A++ G Sbjct: 197 TQAALYAVKHG 207 >gi|152032256|gb|ABS28970.1| acyl-homoserine lactone transcriptional regulator [Burkholderia vietnamiensis] Length = 157 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 13/156 (8%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 NY + D + H S + P+IW++ + ++ G Sbjct: 5 NYPQTWVERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEAGQHGLR 59 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRS 168 G P G + + + E ++ L L + Sbjct: 60 HGWCMPSVSRTGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVP 118 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 LT RE LQ + G T EI + + + T Sbjct: 119 EYTVELTVREREALQWSAAGKTYAEIGKIMHVDDRT 154 >gi|328952588|ref|YP_004369922.1| two component transcriptional regulator, LuxR family [Desulfobacca acetoxidans DSM 11109] gi|328452912|gb|AEB08741.1| two component transcriptional regulator, LuxR family [Desulfobacca acetoxidans DSM 11109] Length = 222 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 151 GACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 Q+ L + LT+RE L+L +G +S+EI L +S TV + Sbjct: 130 LLSPQLKDLLLRKYREDRSQFPEDPLTKREKEILRLIAEGKSSKEIGAVLFISSRTVEHH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + KL + + AI+ GY Sbjct: 190 RANMMRKLGCRKIAELVRYAIQKGY 214 >gi|309791230|ref|ZP_07685762.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308226792|gb|EFO80488.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 218 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + A H + + + LT RE L+L G +++EIA Sbjct: 114 AHAIRAAQRNEAVLHPEVAAKLMQEFSAPRSSETTVDQLTPREMDVLRLVAKGMSNKEIA 173 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L +S T +L + KL +R Q A+R + Sbjct: 174 DTLVISEKTTKTHLSNILSKLHLADRTQVAIYALRKRLV 212 >gi|55821406|ref|YP_139848.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737391|gb|AAV61033.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus LMG 18311] Length = 214 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 146 HDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFR 205 Query: 231 FGYI 234 + Sbjct: 206 HHLV 209 >gi|229169497|ref|ZP_04297202.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613996|gb|EEK71116.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 184 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 120 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHVNKIFRKLNVKSRSQAVIYAVRNQ 179 Query: 233 YI 234 + Sbjct: 180 LV 181 >gi|219848256|ref|YP_002462689.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542515|gb|ACL24253.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETS 180 + + L N+ ++ +V+ F EL + +S LT RE Sbjct: 113 PDELVQMIREVARGRYLINDAVLARPNVAARVLHQFRELAATEEEDSASLFAPLTSREIE 172 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 173 ILDCIARGLSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIVAIKKGWI 226 >gi|111221195|ref|YP_711989.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111148727|emb|CAJ60403.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 213 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + R A +LT RE L+L +G + EIA KL +S +TV ++ + K Sbjct: 132 FATMARGTEDRPRVNAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDK 191 Query: 216 LDAVNRIQAIAKAIRFGY 233 L +R++A+ A+R G Sbjct: 192 LQLHSRMEAVMYAVRQGL 209 >gi|320532198|ref|ZP_08033064.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135576|gb|EFW27658.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 245 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 5/135 (3%) Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANE-VIIEAHGACYQVIT 158 + AG + + R S +++ + + Sbjct: 109 FDLDEYAFAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAASLPS 168 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +LT RE L L G ++ EIA L +S TV ++G+ KLD Sbjct: 169 SDAPAQPSSDPRIDSLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLTKLDV 228 Query: 219 VNRIQAIAKAIRFGY 233 +R+QA+ A G Sbjct: 229 RDRVQAVVVAYETGL 243 >gi|297583730|ref|YP_003699510.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142187|gb|ADH98944.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 212 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + KK + LT RE L+L G +++EI + L +S+ TV ++ + KL +R Sbjct: 136 RMHKKPPAEHEQLTARELEVLELMSRGMSNQEIGDALYISLKTVKVHVSNILSKLGVHDR 195 Query: 222 IQAIAKAIRFGY 233 QA+ A + Sbjct: 196 TQAVIYAFKENL 207 >gi|319653424|ref|ZP_08007524.1| response regulator [Bacillus sp. 2_A_57_CT2] gi|317394908|gb|EFV75646.1| response regulator [Bacillus sp. 2_A_57_CT2] Length = 210 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L G T+++IA++L +++ TV ++ + KL +R QA+ A Sbjct: 145 PHEELTSREMEILLLMTQGKTNQDIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAF 204 Query: 230 RFGYI 234 + + Sbjct: 205 KHSLV 209 >gi|331699103|ref|YP_004335342.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953792|gb|AEA27489.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 198 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 2/157 (1%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ + + + + + + RL I F I Sbjct: 41 ARFSRQPVDVVLVGTQRAVPTGVEATRRLVAAHPQANVIVFGAPDDAGSIAAAIAGGARG 100 Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197 L + E A + + + LTERE L+ G ++ +I + Sbjct: 101 YLRWDASRPELVAALAHTLASTAVPTPRTPADPGVQLTERELQVLRGMSQGKSNGQIGRE 160 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV + KL +R QA+A R G + Sbjct: 161 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|51891630|ref|YP_074321.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855319|dbj|BAD39477.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 198 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFL-ELFKKRSSAARN-----LTER 177 + G + F ++ + A+ + I H ++ + + L + + + LT R Sbjct: 80 CIEEGALGFLTKDIEPADLVDAIRAVHRGEPRLHPEVMKRLMVRTAQPHQPSKRDLLTPR 139 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ G T+ EIAE+L +S TV ++ S KL +R QA A+R G + Sbjct: 140 ELDVLRALAHGLTNREIAERLVISETTVKTHISSILSKLQLTDRTQAALWAVREGLV 196 >gi|271965882|ref|YP_003340078.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509057|gb|ACZ87335.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194 + ++ V + +++ A LT RE L+L DG ++ EI Sbjct: 119 GIRTVATGAALLAPEVTRQLVGRYAARIRPAQATPAETALTPRELEVLRLIADGLSNSEI 178 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L +S TV Y+ KLD +R+QA+ A R G + Sbjct: 179 AATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218 >gi|291456580|ref|ZP_06595970.1| putative two-component regulator [Bifidobacterium breve DSM 20213] gi|291381857|gb|EFE89375.1| putative two-component regulator [Bifidobacterium breve DSM 20213] Length = 268 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 203 PELELLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 262 Query: 229 IRFGYI 234 G + Sbjct: 263 YDNGLV 268 >gi|313890015|ref|ZP_07823651.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121606|gb|EFR44709.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 213 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ Sbjct: 142 PDLHEELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVY 201 Query: 228 AIRFGYI 234 A R + Sbjct: 202 AFRHHLV 208 >gi|295703554|ref|YP_003596629.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] gi|294801213|gb|ADF38279.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] Length = 208 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +K S LT RE L L G T++EIA++L +++ TV ++ + KLD Sbjct: 133 MMSKMRKPSLPHEELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQ 192 Query: 220 NRIQAIAKAIRFGY 233 +R QA+ A + Sbjct: 193 DRTQAVIYAFKHKL 206 >gi|332712354|ref|ZP_08432281.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332348828|gb|EGJ28441.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 243 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L+L +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R Sbjct: 179 AYPLTERELEVLRLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALR 238 Query: 231 FGYI 234 G + Sbjct: 239 SGLV 242 >gi|148657524|ref|YP_001277729.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148569634|gb|ABQ91779.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 223 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEE 193 A + +V+ +F L A LTERE L+ G +++E Sbjct: 119 ARGEALIQPSIARKVVAEFSRLAAGSPPAPERSPLKLPAALTERELDVLKALARGMSNKE 178 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L ++ TV ++ + KLD +R QA+ KA + + Sbjct: 179 IAAALVITEGTVKTHISNILAKLDVRDRTQAVLKAQQLRLL 219 >gi|299537605|ref|ZP_07050898.1| two-component response regulator-like protein [Lysinibacillus fusiformis ZC1] gi|298726974|gb|EFI67556.1| two-component response regulator-like protein [Lysinibacillus fusiformis ZC1] Length = 215 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 33/85 (38%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H + + + LT RE L G ++ EIA L ++ TV + Sbjct: 125 LHPEATTTLEMDRQESQNAPHLLNPLTPREQDVLAELTKGKSNREIASSLFVTEKTVKTH 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + + KL +R QA A++ G Sbjct: 185 ISNIFTKLQVQDRTQAALYAVKHGL 209 >gi|256380987|ref|YP_003104647.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925290|gb|ACU40801.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +S LTERE L L G ++ EIA KL LS TV ++G KL+ +R+QA+ Sbjct: 145 RDASVLDALTEREREVLVLIAKGMSNTEIARKLFLSEATVKTHVGRILAKLELRDRVQAV 204 Query: 226 AKAIRFGYI 234 A G + Sbjct: 205 VLAYETGLV 213 >gi|254471678|ref|ZP_05085079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp. JE062] gi|211958880|gb|EEA94079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp. JE062] Length = 233 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 8/234 (3%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 S+ K S + P L ++++ ++ + I R + + + Sbjct: 5 SDIEAKVKAISEARAAKPVLDIVESYLRRLGASHILITGLPMPNRTIDSLVHRFRWPDER 64 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI-AF 120 + GD L SG P++W +T L + A + Sbjct: 65 NGGVERTTLSAGDSALMLGLSGNRPVVWSVSGTDTGNS-------ELFAAIGEGARVMVI 117 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 PV V+ + + C EL +L+ RE Sbjct: 118 PVDALHPFQAMVVGAGHQIAAEPYDLASLEIVCSAAFRRLFELGVISDQRPGDLSARERR 177 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIAE L +S TV+A+L +A+ KL+A N+ + +A+R+G I Sbjct: 178 VLELTALGKTAHEIAELLEISQRTVHAHLQNASAKLNASNKTHTVVEALRYGQI 231 >gi|152984552|ref|YP_001346614.1| transcriptional regulator NarL [Pseudomonas aeruginosa PA7] gi|150959710|gb|ABR81735.1| two-component response regulator NarL [Pseudomonas aeruginosa PA7] Length = 219 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154 L + + F V V+ + E ++E Sbjct: 76 LRALREAGVDARIVVFTVSDDKGDVVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTL 135 Query: 155 -----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q++ L RS + LTERE L+ GY+++ IA KL ++ TV ++ Sbjct: 136 SPQLTQILAQALRGD-DRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHV 194 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL +R++A A+ + Sbjct: 195 KRVLHKLGMRSRVEAAVWAVENDLV 219 >gi|2765450|emb|CAA75536.1| nitrate/nitrite regulatory protein [Pseudomonas aeruginosa PAO1] Length = 216 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154 L + + F V V+ + E ++E Sbjct: 73 LRALREAGVDARIVVFTVSDDKGDVVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTL 132 Query: 155 -----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q++ L RS + LTERE L+ GY+++ IA KL ++ TV ++ Sbjct: 133 SPQLTQILAQALRGD-DRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHV 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL +R++A A+ + Sbjct: 192 KRVLHKLGMRSRVEAAVWAVENDLV 216 >gi|37523311|ref|NP_926688.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214315|dbj|BAC91683.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 221 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Query: 146 IIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ H + L + + + LT RE L + +G ++ IA +L +S H Sbjct: 129 LVAIHPDLLGAMLCALPGQPRPPTEAPEQPLTPREVEVLSMLAEGLGNKTIARRLQISEH 188 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++GS KL+A +R +A+ +R G I Sbjct: 189 TVKFHIGSIFGKLEATSRTEAVTLGVRRGLI 219 >gi|19554120|ref|NP_602122.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391773|ref|YP_227175.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21325708|dbj|BAC00329.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41327115|emb|CAF20959.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 212 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPSELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGLL 212 >gi|229087315|ref|ZP_04219457.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228696017|gb|EEL48860.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 186 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 122 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181 Query: 233 YI 234 + Sbjct: 182 LV 183 >gi|229163761|ref|ZP_04291706.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619728|gb|EEK76609.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 186 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 122 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181 Query: 233 YI 234 + Sbjct: 182 LV 183 >gi|218440047|ref|YP_002378376.1| GAF modulated LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172775|gb|ACK71508.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 239 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 14/224 (6%) Query: 11 SSSLQELSPRLHLIQ-NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + Q++ A+ + +Y + L + + + Sbjct: 16 AQNHQQIRSHFMETAGELFNAQRWGIYVYDKHLGDSHIEVK-----GLPDRFVEQYEKIG 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D L + P + + L G + P+ Sbjct: 71 RQ-VDPVLQYVLKYHAPAH-EQLILTPQEWKQSLLYQNCCSGYDHEHIMTGPIVGRGELI 128 Query: 130 GYVIFTSEF--LMLANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQ 183 G V F + + + G C + + + + S + LT RE Sbjct: 129 GTVHFARTWGTPAFNRDDLAFLSGVCAHLSANLARIELFPQQFTSEVTKKLTPRELQIAS 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L G T+ +I +L ++ ++V L KL+ R Q +A+ Sbjct: 189 LVAQGLTNAQIGRELWITQNSVKQALKRIFRKLNVTARAQMVAR 232 >gi|149180154|ref|ZP_01858659.1| DNA-binding response regulator [Bacillus sp. SG-1] gi|148852346|gb|EDL66491.1| DNA-binding response regulator [Bacillus sp. SG-1] Length = 216 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 44/85 (51%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + + F + +++ +LTERE L +G +++EI ++L +S TV ++ Sbjct: 126 HPSLTRKLLTFHQQNQRQDRDDNSLTEREREVLGCLVEGLSNKEIGKRLYVSDKTVKIHV 185 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ +R Q + A++ + Sbjct: 186 SNIFKKLNVKSRSQVVIYAVQNKLV 210 >gi|218438401|ref|YP_002376730.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171129|gb|ACK69862.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 249 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT+RE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R Sbjct: 185 SDPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRALR 244 Query: 231 FGYI 234 G + Sbjct: 245 SGLV 248 >gi|326772328|ref|ZP_08231613.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638461|gb|EGE39362.1| two-component system response regulator [Actinomyces viscosus C505] Length = 240 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 5/135 (3%) Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANE-VIIEAHGACYQVIT 158 + AG + + R S +++ + + Sbjct: 104 FDLDEYAFAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAGSLPS 163 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +LT RE L L G ++ EIA L +S TV ++G+ KLD Sbjct: 164 SEAPAQSSSDPRIDSLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDV 223 Query: 219 VNRIQAIAKAIRFGY 233 +R+QA+ A G Sbjct: 224 RDRVQAVVVAYETGL 238 >gi|317129803|ref|YP_004096085.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474751|gb|ADU31354.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 210 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+L +G ++EIA++L +++ TV ++ + KL+ +R QA+ A + Sbjct: 146 HDQLTEREMEVLKLMTEGKANQEIADELYIALKTVKVHVSNILNKLEVHDRTQAVIYAFK 205 Query: 231 FGYI 234 I Sbjct: 206 NNLI 209 >gi|302523631|ref|ZP_07275973.1| response regulator receiver [Streptomyces sp. AA4] gi|302432526|gb|EFL04342.1| response regulator receiver [Streptomyces sp. AA4] Length = 224 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 36/84 (42%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q +LT RE L G ++ EIAE+L LS+ TV Y+ Sbjct: 137 ALIGQFADRIRPASAAGPGPLEHLTPREREVLVQLARGLSNAEIAEELVLSIETVKTYVS 196 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R+QA+ A R G + Sbjct: 197 RILAKLDLRDRVQAVVLAYRTGLV 220 >gi|158334639|ref|YP_001515811.1| two-component response regulator [Acaryochloris marina MBIC11017] gi|158304880|gb|ABW26497.1| two-component response regulator [Acaryochloris marina MBIC11017] Length = 222 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 50/94 (53%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L ++ + T ++++ A L++RE LQL +G +++EIA +L L Sbjct: 129 LDPQIAHKLASMLKSANTPTTAPAHRQTAPATVLSDREREVLQLISEGCSNQEIANQLYL 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+ T+ +Y+ KL +R+QA AKA+R G I Sbjct: 189 SLGTIKSYVRMILNKLSVDDRVQAAAKAVREGLI 222 >gi|156741128|ref|YP_001431257.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232456|gb|ABU57239.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 222 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 8/101 (7%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEE 193 A + +V+ +FL L +A LTERE L+ G +++E Sbjct: 119 ARGEALIQPSIARKVVAEFLRLAVSAPAAPERMTPKSPNALTERELDVLKALARGMSNKE 178 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L ++ TV ++ + KLD +R QA+ KA + + Sbjct: 179 IAAALVITEGTVKTHISNILAKLDVRDRTQAVLKAQQLRLL 219 >gi|291483400|dbj|BAI84475.1| hypothetical protein BSNT_01607 [Bacillus subtilis subsp. natto BEST195] Length = 215 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L K + + LT RE L +G +++EIA L +S TV Sbjct: 124 LSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKT 183 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL+ +R QA A+++ Sbjct: 184 HVSNLLAKLEVADRTQAALFAVKYNL 209 >gi|56965136|ref|YP_176868.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911380|dbj|BAD65907.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 209 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 42/80 (52%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +V + F + LT+RE L+L +G T+++I+E+L +++ TV ++ Sbjct: 127 AKVQGQMISAFTANVPLHQALTKRELEILKLMSEGKTNQQISEELYITIKTVKTHVSHIL 186 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KL+ +R QA+ A++ Sbjct: 187 AKLEVEDRTQAVIYALKEKL 206 >gi|16077998|ref|NP_388814.1| two-component response regulator YhcY [Bacillus subtilis subsp. subtilis str. 168] gi|221308771|ref|ZP_03590618.1| hypothetical protein Bsubs1_05153 [Bacillus subtilis subsp. subtilis str. 168] gi|221313094|ref|ZP_03594899.1| hypothetical protein BsubsN3_05089 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318020|ref|ZP_03599314.1| hypothetical protein BsubsJ_05033 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322294|ref|ZP_03603588.1| hypothetical protein BsubsS_05134 [Bacillus subtilis subsp. subtilis str. SMY] gi|81814998|sp|O07528|YHCZ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yhcZ gi|2226141|emb|CAA74433.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633256|emb|CAB12761.1| two-component response regulator [YhcY] [Bacillus subtilis subsp. subtilis str. 168] Length = 214 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L K + + LT RE L +G +++EIA L +S TV Sbjct: 123 LSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKT 182 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL+ +R QA A+++ Sbjct: 183 HVSNLLAKLEVADRTQAALFAVKYNL 208 >gi|227502186|ref|ZP_03932235.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227077010|gb|EEI14973.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 205 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V+ A L ++ ++L+ RE L+ Sbjct: 97 AGAMGYLLKDSPEEELHEAVLNTAARRRTLAPEVVNLLAQRVGQPEQSLSTRELEILRAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A +L +S TV +L KL R A+ A I Sbjct: 157 ATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205 >gi|256380525|ref|YP_003104185.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924828|gb|ACU40339.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 198 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 2/157 (1%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ + + + + + + RL I F I Sbjct: 41 ARFSRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIAAAIAGGARG 100 Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197 L + E A + ++ S LTERE L+ G ++ +I + Sbjct: 101 YLRWDASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRE 160 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV + KL +R QA+A R G + Sbjct: 161 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|227497785|ref|ZP_03927971.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226832785|gb|EEH65168.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 246 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 4/134 (2%) Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + AG A + R S +++ V + Sbjct: 111 FDLDEYAFAGLRAGAAGFLLKDTRPAELAEAIRTVASGEAVVSPRVTRRMLEMFASHLPQ 170 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +LT RE L L G ++ EIA++L +S TV ++G+ KLD Sbjct: 171 DGAQDAAEDPRIASLTPREREILVLIAQGMSNSEIADQLVVSATTVKTHVGNVLAKLDVR 230 Query: 220 NRIQAIAKAIRFGY 233 +R+QA+ A G Sbjct: 231 DRVQAVVVAYETGL 244 >gi|142969|gb|AAA22473.1| germination protein (ttg start codon) [Bacillus subtilis] gi|1770055|emb|CAA99550.1| transcriptional regulator of spore coat genes [Bacillus subtilis] Length = 74 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +K + +LT+RE +L T++EIA +L +S TV ++ +A KL R Sbjct: 1 MKEKEFQSKPSLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRS 60 Query: 223 QAIAKAIRFG 232 QA+ + +R G Sbjct: 61 QAVVELLRMG 70 >gi|295394810|ref|ZP_06805025.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972406|gb|EFG48266.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 204 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 47/110 (42%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + L V G + L ++ + +L+ RE LQ Sbjct: 94 NAGAQGYLLKDAPPEELTRAVRAVNEGRPVMSDEVTVALTRRLTQPRTSLSARELEILQA 153 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T++EIA++L +S TV +L KL NR A+AKA I Sbjct: 154 VATGHTNKEIAQELFISQATVKTHLVHIFDKLGVDNRTSAVAKAREQQLI 203 >gi|238898715|ref|YP_002924396.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466473|gb|ACQ68247.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 235 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 8/191 (4%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 IC + N + DI D + S + W + + + Sbjct: 40 HICIISNCP-EWFDIYLEFNHQLIDPVVIKALSRVEDFEWDE-NILISSKLALPKVLDQA 97 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKK 166 G F + + + + N+ I+ + + L L++K Sbjct: 98 KTYDISRGHTFVLHDYKQNLAILSIFDDRPLKTNDFFIDREKMYLLLVKTHQKLLSLYEK 157 Query: 167 RSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L++RE L A G T +EI++ +G+ ++ ++ + T KL A+N Sbjct: 158 FEIPTKKNIGLSKRENEILHWASIGKTYQEISKIIGIKECSIKFHMKNITNKLGAINSRH 217 Query: 224 AIAKAIRFGYI 234 AI A + Sbjct: 218 AIKLAYELKLL 228 >gi|206973784|ref|ZP_03234702.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|222095860|ref|YP_002529917.1| response regulator [Bacillus cereus Q1] gi|206747940|gb|EDZ59329.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|221239918|gb|ACM12628.1| response regulator [Bacillus cereus Q1] Length = 213 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207 >gi|46310121|gb|AAS87341.1| putative regulatory protein [uncultured gamma proteobacterium] Length = 233 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 13/220 (5%) Query: 10 KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +S ++ R L + ++A + A + + + ++ + + Sbjct: 22 ESQGRPDIRARSLQAVAALLEAEHVASFVWDQHEHRSTQPVAFNIDGHHLQAYEQHFHRV 81 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + + + + G+ G Sbjct: 82 DVVT--PVMRKVRQA------ARVDCHVPRATLVASEFYNDFLRPADMEHGLNVFFFDGN 133 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + E + FL+ F + L+ RE ++L Sbjct: 134 QDVADLRIWRGRGRVPFSEREEQLLLTLEPY--FLKAFCTVPKQRQALSLREAEVVRLVA 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G + +E+A LG+S TV +L +A KLD NR Q Sbjct: 192 GGASDKEVARALGISFTTVRTHLKNAMAKLDCRNRTQLAR 231 >gi|83716650|ref|YP_439945.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650475|gb|ABC34539.1| transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 376 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 12/221 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 158 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 215 Query: 84 LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W + + +R+ +G+ + + + + FT+ Sbjct: 216 SMPVVWDLRQLARDHAARGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 275 Query: 139 LMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + A G + R AA LT E L +G + +E Sbjct: 276 RSRDWISSATLEQVLALGLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDKE 335 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I +L S H V+ +L + NRIQ A G I Sbjct: 336 IGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASSRGLI 376 >gi|76819024|ref|YP_337392.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|76583497|gb|ABA52971.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] Length = 236 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 18 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 75 Query: 84 LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W Q + G +R+ +G+ + + + + FT+ Sbjct: 76 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 135 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 136 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 194 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 195 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 236 >gi|239940608|ref|ZP_04692545.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987090|ref|ZP_04707754.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 233 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 33/231 (14%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + R+ D + L Sbjct: 22 VDDHPMWRDAVARDLTESGFDVVATAGDGPQAVRRAKAV-----SPDVLVLDLNLPGM-- 74 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ S L V + A + V+ G Sbjct: 75 -PGVQVCKE--------------LVGSHPGLRVLVLSASGEHADVLEAVKSGATGYLLKS 119 Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA------RNLTERETSCL 182 +++ L A G V+ ++ L + A LT+RET L Sbjct: 120 ASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASDEPKAPQLTDRETEVL 179 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 180 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 230 >gi|331266987|ref|YP_004326617.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683659|emb|CBZ01277.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 210 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLNAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|167741857|ref|ZP_02414631.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] Length = 280 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 62 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 119 Query: 84 LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W Q + G +R+ +G+ + + + + FT+ Sbjct: 120 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 179 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 180 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 238 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 239 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 280 >gi|322516397|ref|ZP_08069322.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322125130|gb|EFX96523.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 214 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE L L GY ++ IA +L +S+ TV ++ + KL+ +R Q Sbjct: 139 HDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQ 198 Query: 224 AIAKAIRFGYI 234 A+ A R + Sbjct: 199 AVVYAFRHHLV 209 >gi|323489447|ref|ZP_08094676.1| two-component response regulator-like protein [Planococcus donghaensis MPA1U2] gi|323396941|gb|EGA89758.1| two-component response regulator-like protein [Planococcus donghaensis MPA1U2] Length = 213 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 143 NEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++ + + ++ L + LT RE L G ++ EIA L ++ Sbjct: 116 RSLMRGENTLHPKASSELLKAPAEPAPHTINQLTPREQEVLAELTKGKSNREIASALFVT 175 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + +KL +R QA A++ G Sbjct: 176 EKTVKTHISNIFIKLAVQDRTQAALYAVKHGL 207 >gi|229051230|ref|ZP_04194758.1| Response regulator receiver [Bacillus cereus AH676] gi|228722128|gb|EEL73545.1| Response regulator receiver [Bacillus cereus AH676] Length = 214 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE LQL G + EIA+ L +S TV ++ + KLD +R QA AIR Sbjct: 151 EALTKREIDVLQLLAYGKQNHEIAKILFVSDGTVKTHIHNILQKLDVTDRTQAAVMAIRK 210 Query: 232 GYI 234 + Sbjct: 211 KIV 213 >gi|254382632|ref|ZP_04997990.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341535|gb|EDX22501.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 215 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 74/232 (31%), Gaps = 35/232 (15%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + A F + R+ H LD G Sbjct: 4 VDDHPMWRDAVARDLAAAGFDVVATAGDGPEAVRRAGAAAPHVLVLDLN--------LPG 55 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ ++ L V + A + V+ G + Sbjct: 56 MPGVQVCKE--------------LVGANPALRVLVLSASGEHADVLEAVKSGATGY-LLK 100 Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAAR------NLTERETSC 181 ++ A G V+ ++ L + AA LT+RET Sbjct: 101 SAGAQELIDAVRRTAAGDPVFTPGLAGLVLGEYRRLATDPAPAAPDEPKAPQLTDRETEV 160 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 161 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212 >gi|197122287|ref|YP_002134238.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917070|ref|YP_002492374.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172136|gb|ACG73109.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219954924|gb|ACL65308.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 218 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + + +LT+RE L+L +G +++E+A+ LG+SV T ++ Sbjct: 132 VARTAMEEAGPAAPGEADPYESLTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREH 191 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL NR + + AIR G I Sbjct: 192 VMEKLGVHNRTELVRFAIRKGVI 214 >gi|309789968|ref|ZP_07684544.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227988|gb|EFO81640.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 253 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%) Query: 144 EVIIEAHGACYQVITDFLELFKKRS--SAAR-----NLTERETSCLQLAGDGYTSEEIAE 196 +V++E +V++ F L + + AA L+ERE L+ G +++EIA+ Sbjct: 136 DVVLEEPQVAKRVLSQFRNLPEATATDPAADFPIFTPLSEREIEVLERIAAGGSNKEIAD 195 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S TV ++ S KL +R QA+ A+R G+I Sbjct: 196 SLSISTQTVKNHISSILRKLSLNDRTQAVLFALRRGWI 233 >gi|315647611|ref|ZP_07900713.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315277050|gb|EFU40391.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 218 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 8/102 (7%) Query: 140 MLANEVIIEAHGACYQVITDFLELF--------KKRSSAARNLTERETSCLQLAGDGYTS 191 + ++A ++ L +K LT RE L +G ++ Sbjct: 112 PESWHEYLKAIAVDEAPMSRELAFRILKEFSQQEKPDPGNSPLTAREREILGRVAEGLSN 171 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +I+ L +S +TV +L + KL NR+Q A G+ Sbjct: 172 RDISVALCISENTVKNHLKNILQKLHLENRVQLTRYAFEQGW 213 >gi|271962958|ref|YP_003337154.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506133|gb|ACZ84411.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 39/84 (46%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A E + LT+RE L+L G + EIA++L +S +TV Sbjct: 144 MAAKLITEFANMSRKEAERPPQLPVPRLTDREMEVLRLVAKGMNNREIAKQLFISENTVK 203 Query: 207 AYLGSATVKLDAVNRIQAIAKAIR 230 ++ + KL +R++A+ A+R Sbjct: 204 NHVRNILDKLQLHSRMEAVVYAVR 227 >gi|108805421|ref|YP_645358.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766664|gb|ABG05546.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 232 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLE--LFKKRSSAARNLTE 176 GYV+ +S + + + ++I D A LT Sbjct: 105 AGAAGYVLKSSPLPRVISALRRLLSGESPLNQELAARLIQDLARRPGGGGNPPPAEELTA 164 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G T+ EIA +L +S T +++ + KL +R QA+A+A G I Sbjct: 165 REREVLVLMARGRTNPEIARELVISRGTAKSHVQNIIRKLGVSDRTQAVARAFELGLI 222 >gi|167646079|ref|YP_001683742.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348509|gb|ABZ71244.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 249 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 65/249 (26%), Gaps = 22/249 (8%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPR--------RQQLICE 53 + T + Q L A + L P + + Sbjct: 5 TALVRTESAACPAQAFRATLGDAARLCGFSQAAYMHLGHRLPRPEDSDAAAMETPRELIS 64 Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 D D LP W + + + + R Sbjct: 65 SGGLDEAL---YRKRGYLAFDPLAVRAAKAFLPFAWSLAD---LADPNARPLARAFEAWG 118 Query: 114 PFAGIAFPVRLGFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 +G+ PV+ V F + L G + Sbjct: 119 VRSGLIVPVQDSTAGPALVNFLHAESQSRAALDAGAEAARDGLALLTAARLHAAARASLP 178 Query: 170 AA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L RE L+LA G T E A +L LS V +L A KLD N+ A+ Sbjct: 179 VHGTSDAGLNAREMQVLRLAAQGLTEMETAARLKLSRRGVQFHLSRAGAKLDTTNKTAAV 238 Query: 226 AKAIRFGYI 234 A+AI G I Sbjct: 239 ARAISLGLI 247 >gi|321314657|ref|YP_004206944.1| two-component response regulator YhcY [Bacillus subtilis BSn5] gi|320020931|gb|ADV95917.1| two-component response regulator (YhcY) [Bacillus subtilis BSn5] Length = 215 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L+ K + + LT RE L +G +++EIA L +S TV Sbjct: 124 LSTAIMPHVLKHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKT 183 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL+ +R QA A+++ Sbjct: 184 HVSNLLAKLEVADRTQAALFAVKYNL 209 >gi|321313453|ref|YP_004205740.1| two-component response regulator YxjM [Bacillus subtilis BSn5] gi|320019727|gb|ADV94713.1| two-component response regulator (YxjM) [Bacillus subtilis BSn5] Length = 218 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAE 196 A I ++I++ ++ A T+RE LQ G +E+IAE Sbjct: 120 RAAARGEAIFRTVTAAKIISETFRAKQQPHPEELAEPFTKRELEVLQQMAYGLRNEDIAE 179 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KL +S TV ++ K +A +R QA+ AIR G + Sbjct: 180 KLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|239940109|ref|ZP_04692046.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986597|ref|ZP_04707261.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443540|ref|ZP_06582930.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346487|gb|EFE73391.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + A Sbjct: 97 LRAGASGFLLKDAPAAELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEEPVPDALH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA +L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|163790348|ref|ZP_02184780.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] gi|159874419|gb|EDP68491.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L G +++EIA+ L +++ TV ++ + KL+ +R QA A + Sbjct: 146 HDDLTNREQEILMLISQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205 Query: 231 FGYI 234 I Sbjct: 206 HHLI 209 >gi|269956412|ref|YP_003326201.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305093|gb|ACZ30643.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 1/106 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDG 188 + + A ++ V + + A LT RE L+L +G Sbjct: 113 PAQLLDGIRTVAAGSALLAPEVTRRLVGRYASRVAPPEPAPADGPLTPRELDVLRLLAEG 172 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA L ++ TV Y+ KLD +R+QA+ A + G + Sbjct: 173 LSNAEIAAALVITRETVKTYVSRILTKLDLRDRVQAVVWAYQTGLV 218 >gi|297202491|ref|ZP_06919888.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197709982|gb|EDY54016.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 212 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA-RNLTERETSC 181 GY++ + L V A G V + + + + L+ RE Sbjct: 99 AGATGYLLKDAPRDELFTAVRAAAQGRTVLSPAVASRLVSAVRAPGAPGNETLSAREREV 158 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA +L +S TV +L KL +R A+A A G + Sbjct: 159 LALVAKGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 211 >gi|167584589|ref|ZP_02376977.1| LuxR family transcriptional regulatory protein [Burkholderia ubonensis Bu] Length = 222 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 46/111 (41%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L I + + A ++ + ++ LT RE L Sbjct: 110 LPRGATPGEITAAIEAVAAGLCVLSPEILARLLAEHKAPRQTASAALVEMLTPREIEVLT 169 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G ++EIA +L +S +TV +L S KL A +R +A+ + +R G + Sbjct: 170 MLAEGLGNKEIARQLDISDNTVKFHLSSIFGKLGASSRTEAVMQGMRHGLV 220 >gi|21222055|ref|NP_627834.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786856|ref|ZP_05525287.1| two-component system regulator [Streptomyces lividans TK24] gi|289770751|ref|ZP_06530129.1| two-component system regulator [Streptomyces lividans TK24] gi|4753864|emb|CAB42027.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700950|gb|EFD68379.1| two-component system regulator [Streptomyces lividans TK24] Length = 228 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A + A G ++I +F L + + + LTERET L Sbjct: 113 DASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDDRPRAPLKARVGELTERETEVLA 172 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA++L ++ TV ++G VKL +R QA A G + Sbjct: 173 LIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 223 >gi|256397512|ref|YP_003119076.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363738|gb|ACU77235.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 239 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT+RE L L G ++ EIA KL LS TV ++G +KL +R+Q Sbjct: 164 SEPAPPELTVLTDREHEVLLLVAQGMSNAEIAGKLFLSEATVKTHVGRILMKLGLRDRVQ 223 Query: 224 AIAKAIRFGYI 234 A+ A G + Sbjct: 224 AVVLAYETGLV 234 >gi|229059933|ref|ZP_04197307.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228719346|gb|EEL70950.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 211 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA L ++ TV ++ Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + KL+ +R QA A++ G Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209 >gi|145296944|ref|YP_001139765.1| hypothetical protein cgR_2844 [Corynebacterium glutamicum R] gi|140846864|dbj|BAF55863.1| hypothetical protein [Corynebacterium glutamicum R] Length = 212 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPSELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGLL 212 >gi|15615637|ref|NP_243941.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus halodurans C-125] gi|10175697|dbj|BAB06794.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus halodurans C-125] Length = 74 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE +L T++EIAE+L +S TV ++ + KL R QA+ + I Sbjct: 8 PKPLLTKREREVFELLVQDKTTKEIAEQLFISEKTVRNHISNTMQKLGVKGRSQAVIELI 67 Query: 230 RFG 232 R G Sbjct: 68 RLG 70 >gi|300782698|ref|YP_003762989.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792212|gb|ADJ42587.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 198 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 2/157 (1%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ + + + + + + RL I F I Sbjct: 41 ARYSRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIAAAIAGGARG 100 Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197 L + E A + ++ S LTERE L+ G ++ +I + Sbjct: 101 YLRWDASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRE 160 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV + KL +R QA+A R G + Sbjct: 161 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|312112369|ref|YP_003990685.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217470|gb|ADP76074.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 557 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 5/125 (4%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKR--- 167 I+F V H V EV + G ++ K+ Sbjct: 422 FGTVMEISFSVHEHMHGVMAVHMKHLEAAKEAEVYVTALIGIGTMIMKQNNYHGPKQQLN 481 Query: 168 -SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L L G ++ EIA++L +S+HTV ++ + K+ +R Q IA Sbjct: 482 MDMLSERLTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIA 541 Query: 227 KAIRF 231 + Sbjct: 542 LVYQL 546 >gi|307155198|ref|YP_003890582.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306985426|gb|ADN17307.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 248 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R Sbjct: 185 DPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRALRS 244 Query: 232 GYI 234 G + Sbjct: 245 GLV 247 >gi|120555999|ref|YP_960350.1| two component LuxR family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325848|gb|ABM20163.1| two component transcriptional regulator, LuxR family [Marinobacter aquaeolei VT8] Length = 219 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 18/149 (12%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGAC---- 153 + +L + + F V + M ++I + H A Sbjct: 68 EALRKLREQNVSSRIVMFTVSDQEDDVVAALRAGADGYLLKDMEPEDMIAQLHQAAVGKM 127 Query: 154 ------YQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++ + L + +LT RE L+L +G +++ I KL +S T Sbjct: 128 VISDRLTTLLAEALRSNKPQQTSRPDFDSLTPREKDILRLIAEGLSNKMIGRKLDISDGT 187 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V ++ KL+ +R++ A+ G Sbjct: 188 VKVHVKHLLKKLNLRSRVEVAVWAVEEGL 216 >gi|118471080|ref|YP_885478.1| response regulator [Mycobacterium smegmatis str. MC2 155] gi|118172367|gb|ABK73263.1| putative response regulator [Mycobacterium smegmatis str. MC2 155] Length = 243 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 12/150 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT---SEFLMLANE 144 W + E S ++ G + G + N Sbjct: 92 DWDDVPEFYDSYSGAEVLRPE----GFTNGFLMVLHDGAGDMVGMCQGNMERPDFTPRNR 147 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +EA + L + LT RE L L G ++ EI+++L LS T Sbjct: 148 STVEAVRPLFTKYVTKLRTRARA-----RLTPREQEILALLRSGLSNAEISDRLYLSPRT 202 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V+ ++ KL NR+ A +A + Sbjct: 203 VSTHVERVLRKLGVANRVAAAVQATELELL 232 >gi|308235176|ref|ZP_07665913.1| response regulator receiver domain protein [Gardnerella vaginalis ATCC 14018] Length = 240 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K+DA +R+QA+ A G Sbjct: 180 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENGL 239 Query: 234 I 234 + Sbjct: 240 V 240 >gi|312199008|ref|YP_004019069.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311230344|gb|ADP83199.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 239 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%) Query: 152 ACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +++ +F + + +LT RE L+L +G + EIA KL +S +TV Sbjct: 150 MASKLMAEFASIARGTDDRPRLHTPHLTARELEVLKLVAEGRANREIARKLFISENTVKN 209 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL +R++A+ A+R G Sbjct: 210 HVRNILDKLQLHSRMEAVMYAVRQGL 235 >gi|309799719|ref|ZP_07693936.1| DNA-binding response regulator [Streptococcus infantis SK1302] gi|308116675|gb|EFO54134.1| DNA-binding response regulator [Streptococcus infantis SK1302] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLHAVRKVAVGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205 >gi|307710534|ref|ZP_07646970.1| response regulator [Streptococcus mitis SK564] gi|307618687|gb|EFN97827.1| response regulator [Streptococcus mitis SK564] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSAGELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|308172920|ref|YP_003919625.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605784|emb|CBI42155.1| two-component response regulator [YhcY] [Bacillus amyloliquefaciens DSM 7] Length = 214 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ G +++EIA L +S TV ++ + KL+ +R QA A++ Sbjct: 148 QLTPREKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVK 205 >gi|182439176|ref|YP_001826895.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779828|ref|ZP_08239093.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178467692|dbj|BAG22212.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660161|gb|EGE45007.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 234 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 33/231 (14%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + R+ D + L Sbjct: 23 VDDHPMWRDAVARDLTESGFDVVATAGDGPQAVRR-----AGAVSPDVLVLDLNLPGM-- 75 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ S L V + A + V+ G Sbjct: 76 -PGVQVCKE--------------LVGSHPGLRVLVLSASGEHADVLEAVKSGATGYLLKS 120 Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA------RNLTERETSCL 182 +++ L A G V+ ++ L + A LT+RET L Sbjct: 121 ASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASNEPKAPQLTDRETEVL 180 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 181 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 231 >gi|163848766|ref|YP_001636810.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526715|ref|YP_002571186.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670055|gb|ABY36421.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450594|gb|ACM54860.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 218 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 39/99 (39%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + A H + + + LT RE L+L G +++EIA Sbjct: 114 AHAIRAACRGEAVLHPDVAAKLMQEFNTPRPNEAPVEQLTPREMDVLRLVAKGMSNKEIA 173 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L +S TV ++ + KL +R Q A+R + Sbjct: 174 ETLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKRLV 212 >gi|332978141|gb|EGK14877.1| transcriptional regulatory protein DegU [Desmospora sp. 8437] Length = 92 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T++EIA++L +S TV ++ + KL+ R QA+ + +R G Sbjct: 30 LTNREREVFELLVQDKTTKEIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELVRLG 88 >gi|315649841|ref|ZP_07902924.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315274815|gb|EFU38196.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 240 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I++G Sbjct: 177 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYG 236 Query: 233 YI 234 ++ Sbjct: 237 WV 238 >gi|311032377|ref|ZP_07710467.1| two-component response regulator LiaR [Bacillus sp. m3-13] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ + LT RE L L G T++EIA++L +++ TV ++ + Sbjct: 129 VAGKMMQKMRRKTE--ILPHEELTNREMEILLLMTQGKTNQEIADELFIALKTVKVHVSN 186 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA+ A + + Sbjct: 187 ILAKLQVQDRTQAVIYAFKHSLV 209 >gi|310644345|ref|YP_003949104.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309249296|gb|ADO58863.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 240 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I++G Sbjct: 177 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYG 236 Query: 233 YI 234 ++ Sbjct: 237 WV 238 >gi|308071115|ref|YP_003872720.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305860394|gb|ADM72182.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa E681] Length = 240 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I++G Sbjct: 177 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYG 236 Query: 233 YI 234 ++ Sbjct: 237 WV 238 >gi|261409652|ref|YP_003245893.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928696|ref|ZP_08282545.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261286115|gb|ACX68086.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328937477|gb|EGG33895.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 240 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I++G Sbjct: 177 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYG 236 Query: 233 YI 234 ++ Sbjct: 237 WV 238 >gi|289523811|ref|ZP_06440665.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502955|gb|EFD24119.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 211 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 8/155 (5%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLAN 143 I L ++ L A + + + Sbjct: 50 DVALIDIRMPGIDGVTLVRQIRQEELKVACLMLTSYDAQQYVLASLRAGAKGYILKTASP 109 Query: 144 EVIIEAHGACY----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 E ++ A + + ++ +L+ RE L LAG G +S+EIA KL Sbjct: 110 EELLRAIEIVASQGVYLDKEVAAAVEEPGFTPESLSPREREVLLLAGRGESSKEIASKLY 169 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV +L S KL A N+ +A+ A+++G + Sbjct: 170 ISERTVQTHLASIYDKLGARNKTEALLLALKYGVV 204 >gi|262275905|ref|ZP_06053714.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP 101886] gi|262219713|gb|EEY71029.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP 101886] Length = 209 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVI--------- 157 L + V ++ L + E + Sbjct: 71 LRSDGCTAVIVILTVSDSPSDIHAIVQAGADGYLLKDSEPEELVMQLKSAMTGEKAYSEQ 130 Query: 158 -TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +LE + +S LTERE L+L G +++IAE L +S TV +L + KL Sbjct: 131 VRTYLEKSRDHTSPLSVLTERERQILRLVAKGLRNKQIAETLYISEATVKVHLKNLLKKL 190 Query: 217 DAVNRIQAIAKAIRF 231 +R+ A + Sbjct: 191 GVESRVAATVLYLEH 205 >gi|159897239|ref|YP_001543486.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890278|gb|ABX03358.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 240 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTER 177 G + + + NE ++ +V+ F EL + SS LT R Sbjct: 109 DPTQLVGMIRDVAHGRYVINESVMSKPHVATRVLNQFRELSNVANNSEDTSSMFAPLTSR 168 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIA +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 169 EIEILDCIARGLSNKEIANQLSISGQTVKNHITSILSKLQVNDRTMAVIHAIQQGWI 225 >gi|253573655|ref|ZP_04850998.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847183|gb|EES75188.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +A++ + +++ +F + ++ S LT RE L G T+ EIA L Sbjct: 117 RAIASDEAPLSSELALRILQEF-PVNRRTSGEQPPLTAREREILGWVAQGMTNREIAGVL 175 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV +L + KL NR+Q A+ G+I Sbjct: 176 HISDQTVKNHLKNILQKLHLENRVQLTRYALEQGWI 211 >gi|325920818|ref|ZP_08182719.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325548715|gb|EGD19668.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 213 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|291444045|ref|ZP_06583435.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346992|gb|EFE73896.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 33/231 (14%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + R+ D + L Sbjct: 3 VDDHPMWRDAVARDLTESGFDVVATAGDGPQAVRRAKAV-----SPDVLVLDLNLPGM-- 55 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ S L V + A + V+ G Sbjct: 56 -PGVQVCKE--------------LVGSHPGLRVLVLSASGEHADVLEAVKSGATGYLLKS 100 Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA------RNLTERETSCL 182 +++ L A G V+ ++ L + A LT+RET L Sbjct: 101 ASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASDEPKAPQLTDRETEVL 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 161 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 211 >gi|295399431|ref|ZP_06809413.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312110010|ref|YP_003988326.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978897|gb|EFG54493.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311215111|gb|ADP73715.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 74 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + + Sbjct: 8 PKPLLTKREREVFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELL 67 Query: 230 RFG 232 R G Sbjct: 68 RMG 70 >gi|163848177|ref|YP_001636221.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526082|ref|YP_002570553.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669466|gb|ABY35832.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449961|gb|ACM54227.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 236 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETS 180 + + L N+ ++ +V+ F EL + +S LT RE Sbjct: 113 PEELVHMIREVARGRYLINDAVLAHPNVAARVLHQFRELAATDEEDGASLFAPLTSREIE 172 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 173 ILDCIARGLSNKEIASELSISSQTVKNHITSILAKLQVNDRTMAVIVAIKKGWI 226 >gi|220914117|ref|YP_002489426.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860995|gb|ACL41337.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 222 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + L V+ A G L + S+ LT RE L+L Sbjct: 107 AGASGYMLKDAPPEQLRQAVLQAAAGGTVLAPRAAALLMDRISNPGTALTPREVQLLELL 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA++L +S TV +L KL NR AIA A + I Sbjct: 167 ATGLSNRAIAKQLFVSEATVKTHLVHIYGKLGVDNRTAAIAAATQRRII 215 >gi|146320266|ref|YP_001199977.1| response regulator [Streptococcus suis 98HAH33] gi|223933224|ref|ZP_03625215.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|253751279|ref|YP_003024420.1| response regulator protein [Streptococcus suis SC84] gi|253753180|ref|YP_003026320.1| response regulator protein [Streptococcus suis P1/7] gi|253755003|ref|YP_003028143.1| response regulator protein [Streptococcus suis BM407] gi|330832254|ref|YP_004401079.1| response regulator [Streptococcus suis ST3] gi|145691072|gb|ABP91577.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus suis 98HAH33] gi|223898154|gb|EEF64524.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|251815568|emb|CAZ51151.1| response regulator protein [Streptococcus suis SC84] gi|251817467|emb|CAZ55208.1| response regulator protein [Streptococcus suis BM407] gi|251819425|emb|CAR44899.1| response regulator protein [Streptococcus suis P1/7] gi|292557848|gb|ADE30849.1| regulatory protein, LuxR: Response regulator receiver [Streptococcus suis GZ1] gi|319757560|gb|ADV69502.1| response regulator [Streptococcus suis JS14] gi|329306477|gb|AEB80893.1| response regulator [Streptococcus suis ST3] Length = 213 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 48/110 (43%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G +++ ++ A + A + +E K+ +LT RE L L Sbjct: 99 GARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY ++ IA++ +S+ TV ++ + KL +R QA+ A + G + Sbjct: 159 LAKGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLV 208 >gi|288922222|ref|ZP_06416420.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346413|gb|EFC80744.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 239 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + A +LT RE L+L +G + EIA KL +S +TV ++ + KL +R++ Sbjct: 166 EDRPRAHAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRME 225 Query: 224 AIAKAIRFGY 233 A+ A+R G Sbjct: 226 AVMYAVRQGL 235 >gi|186681901|ref|YP_001865097.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464353|gb|ACC80154.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 240 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L ++ LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A Sbjct: 164 EALASEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCA 223 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA +A+R G + Sbjct: 224 DDRTQAAVRALRSGLV 239 >gi|159027236|emb|CAO89331.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 234 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 42/79 (53%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 VI ++ ++ LTERE L L G+++ +IA++L +++ TV ++ + K Sbjct: 155 VIIQGVDPEHRQLLENVPLTERELEILALIVGGFSNAQIADRLYITIGTVKTHVRNILNK 214 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R QA A+R G + Sbjct: 215 LSVDDRTQAAVLALRSGLV 233 >gi|258626786|ref|ZP_05721594.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580926|gb|EEW05867.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 224 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 72/238 (30%), Gaps = 30/238 (12%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S S+S+ + L I ++I + IC H + Sbjct: 9 LSNQLRCADNSTSIHDWFDELK---KDISFE----FSILGVFGEHYSLEPIC--HGFSPT 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D F+ F I+ + + +L L G I Sbjct: 60 QFSTCFGNKRPENDPFVAAFQQSGQGIM-ALMDPYNHPDYGKRLL--LAGQHGEKKAIFL 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLT 175 +++ I + + + ++ LT Sbjct: 117 TSFGN-------------RHPSSDEIDTLYLLTPHLYLASDSIAQQSQQLHLPPPLNPLT 163 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 164 DRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|293364822|ref|ZP_06611539.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703071|ref|ZP_07640018.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316272|gb|EFE56708.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623464|gb|EFO02454.1| response regulator [Streptococcus oralis ATCC 35037] Length = 210 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVI--IEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + + A Q ++ +E + LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHALRKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|239992911|ref|ZP_04713435.1| two-component system regulatory protein [Alteromonas macleodii ATCC 27126] Length = 214 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTE+E L+L GY+++EIA+ + S T+ + S KL +R +A+ KA+ Sbjct: 152 EPLTEKEVEILRLIAAGYSNKEIADAMFKSTGTIKNQVSSIMAKLGVRDRTRAVLKALEQ 211 Query: 232 GYI 234 G I Sbjct: 212 GVI 214 >gi|225182003|ref|ZP_03735435.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225167288|gb|EEG76107.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 217 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ +F L + L+ RET L L G +++EI ++L +S TV ++ Sbjct: 133 RISEKMCGEFQRLALRNVH-DEPLSRRETDVLTLIARGKSNKEIGDELYISEKTVKNHIT 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + K+ +R QA A++ + Sbjct: 192 NIFRKIQVTDRTQAALYAVKNRIV 215 >gi|311114585|ref|YP_003985806.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] gi|310946079|gb|ADP38783.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] Length = 243 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K+DA +R+QA+ A G Sbjct: 183 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENGL 242 Query: 234 I 234 + Sbjct: 243 V 243 >gi|269219961|ref|ZP_06163815.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269210597|gb|EEZ76937.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 230 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ + + LTERE L+L G T+ EIA+ L ++ T+ ++G Sbjct: 142 LVEKLAKEATAMRATDPHILDGLTEREIEVLKLVAQGLTNGEIAKTLTVAEATIKTHIGH 201 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R+QA+ A G + Sbjct: 202 IFYKLGARDRVQAVVLAYEAGLV 224 >gi|226366304|ref|YP_002784087.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226244794|dbj|BAH55142.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 530 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 RL + G+ P R A ++A + + Sbjct: 395 RLLAAAEAYQGLLEP-RPHRPALDARGAADRLGEEARAGRLDAESVAAVLAAAGQR-QSR 452 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT+RE L+L G +++EIA +L ++ T ++ KL NR QA Sbjct: 453 RTPWPAGLTDREVEILRLVAQGRSNKEIAAELFIAEKTARNHVERVYAKLGVNNRTQAGL 512 Query: 227 KAIRFGYI 234 AI G + Sbjct: 513 AAIDRGLV 520 >gi|322390996|ref|ZP_08064501.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321142300|gb|EFX37773.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 210 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 142 HDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFR 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|297626683|ref|YP_003688446.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922448|emb|CBL57021.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 217 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 +G V + L + + E+ + LT Sbjct: 98 SGFILKNSDPTELVAAVRAVANGDALLSPSVTLRVIRAMAQGHAPREVTPGADAELARLT 157 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+ G ++ EIA +L +S TV ++ + KL +R+QA+A A + G + Sbjct: 158 DREVEVLRALARGLSNAEIAAELFVSEATVKTHVSNVLSKLGLRDRVQAVAHAYQHGLV 216 >gi|88807485|ref|ZP_01122997.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] gi|88788699|gb|EAR19854.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] Length = 227 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 4/114 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDFLELFKKRSSAARNLTERET 179 L G + +S + + I +R L+ERE Sbjct: 114 LDAFAEGVIFISSLGKGIDGDFIRSLSAIAEGGNYYPQDVQTAAGYERIEVLPELSEREI 173 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++ G T++EIA+ L +S TV ++ S K+ +R QA+ KAI+ G Sbjct: 174 EVLKVLSCGMTNKEIADTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAGI 227 >gi|325914881|ref|ZP_08177216.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325538972|gb|EGD10633.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|89896875|ref|YP_520362.1| hypothetical protein DSY4129 [Desulfitobacterium hafniense Y51] gi|89336323|dbj|BAE85918.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 215 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 41/96 (42%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +A I ++ K + +A NLTERE L+ GYT++EI E L Sbjct: 118 RDVARGEIYLDSSLAQNLVKSMYSPRKDNNRSASNLTEREKEVLRYIALGYTNKEIGESL 177 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +SV TV + K+ R + AI GYI Sbjct: 178 SVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYI 213 >gi|297201227|ref|ZP_06918624.1| two-component system regulator [Streptomyces sviceus ATCC 29083] gi|197712910|gb|EDY56944.1| two-component system regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183 ++A + A G ++I +F L + + + LTERET L Sbjct: 112 DASAEQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDHRPRAPLKTRVGELTERETEVLA 171 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA +L ++ TV ++G VKL +R QA A G + Sbjct: 172 LIAQGLSNAEIAGRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 222 >gi|262173265|ref|ZP_06040942.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] gi|261890623|gb|EEY36610.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] Length = 224 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 72/238 (30%), Gaps = 30/238 (12%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S S+S+ + L I ++I + IC H + Sbjct: 9 LSNQLRCADNSTSIHDWFDELK---KDISFE----FSILGIFGEHYSLEPIC--HGFSPT 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D F+ F I+ + + +L L G I Sbjct: 60 QFSTCFGNKRPENDPFVAAFQQSGQGIM-ALMDPYNHPDYGKRLL--LAGQHGEKKAIFL 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLT 175 +++ I + + + ++ LT Sbjct: 117 TSFGN-------------RHPSSDEIDTLYLLTPHLYLASDSIAQQSQQLHLPPPLNPLT 163 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 164 DRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|302550305|ref|ZP_07302647.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467923|gb|EFL31016.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLD 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|167819038|ref|ZP_02450718.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] Length = 267 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 49 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 106 Query: 84 LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W Q + G +R+ +G+ + + + + FT+ Sbjct: 107 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 166 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 167 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 225 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 226 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 267 >gi|86158419|ref|YP_465204.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774930|gb|ABC81767.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 218 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + + +LT+RE L+L +G +++E+A+ LG+SV T ++ Sbjct: 132 VARTAMEEAGPAAPGEADPYESLTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREH 191 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL NR + + AIR G I Sbjct: 192 VMEKLGVHNRTELVRFAIRKGVI 214 >gi|315612573|ref|ZP_07887486.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315315554|gb|EFU63593.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 210 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|320010128|gb|ADW04978.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 219 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L+L +G ++ EIA L +S TV ++ KL +R+QA+ Sbjct: 152 TDPDIPLTPRELEVLRLIAEGLSNSEIAASLVISRETVKTFVSRILTKLGLRDRVQAVVY 211 Query: 228 AIRFGYI 234 A R G + Sbjct: 212 AYRQGLV 218 >gi|257054540|ref|YP_003132372.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584412|gb|ACU95545.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 198 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 2/157 (1%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ + + + + + + RL I F I Sbjct: 41 ARYSRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIAAAIAGGARG 100 Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197 L + E A + ++ S LTERE L+ G ++ +I + Sbjct: 101 YLRWDASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRE 160 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV + KL +R QA+A R G + Sbjct: 161 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|256826588|ref|YP_003150547.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582731|gb|ACU93865.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 261 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++I F+ + S+AA L T+RE L+ G ++EEIA+ L +S TV + Sbjct: 172 ITRRLIETFVSSRPRTSAAAGGLVDLTDREREILRFVARGMSNEEIADDLVISPATVKTH 231 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L KLDA +R Q + A G + Sbjct: 232 LARIMGKLDAHDRAQLVVAAYESGLV 257 >gi|284034837|ref|YP_003384768.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814130|gb|ADB35969.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTS 191 + + ++ V + ++ A LT RE L L DG ++ Sbjct: 116 LLQGIRTVAGGAALLAPEVTRQLVGRYAARVRPAENAPAEVPLTPRELEVLLLMADGLSN 175 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L +S TV Y+ KLD +R+QA+ A R G + Sbjct: 176 SEIAATLVISHETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218 >gi|237653295|ref|YP_002889609.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gi|237624542|gb|ACR01232.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 243 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 39/101 (38%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + + A + + L+ RE L+ G +++ Sbjct: 137 LLSGVRSSASRAAMGGAIAPAPGALARSAPAAGAEPAELEKLSPREREILRFIARGQSNK 196 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA L L+ TV ++ + KL+ +R+QA A+ G Sbjct: 197 EIARALELAESTVKIHVQNMLRKLNLSSRVQAAVFAVENGL 237 >gi|307942529|ref|ZP_07657877.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307774168|gb|EFO33381.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 278 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 66/235 (28%), Gaps = 22/235 (9%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + S+SL+ + + A FA Y +++ + N D+ + Sbjct: 43 RLSNSLELRQRVGERLLGLLNADFFASYVADTSGRGFASR----VSVNMAPDNLKLYET- 97 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 Y D S + ++ +E + G+ + G Sbjct: 98 YFQYRDPITQKLASRRQAAHVNEVIAQSDLE-KTEFYNDFLQRDGLHHGVNYHAHDGSVH 156 Query: 129 NGYVIFTSEFLMLA--NEVIIEAHGACYQ---VITDFLELFK-----------KRSSAAR 172 G + I + + + + A Sbjct: 157 VGDLRVWRSRAKETFGRREIDILQAVGTAFSNALIQHRRFAENLRQLDPLHTLESLAEAL 216 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RE L + IA+ LG+S+ TV ++ K NR +AK Sbjct: 217 SLTPREAEILSCMTHYGRDQHIADHLGVSITTVRTHIQRLFQKAGVNNRTALVAK 271 >gi|291300839|ref|YP_003512117.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570059|gb|ADD43024.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194 + + +++ V + + LT RE L+ +G ++ EI Sbjct: 119 GIRTVASGAALLDPDVTRQLVGRYAARIRPAEDTPDDTALTPRELEVLRHIANGLSNSEI 178 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A L +S TV Y+ KL +R+QA+ A R G Sbjct: 179 AATLVISHETVKTYVSRILTKLGLRDRVQAVVYAYRRGL 217 >gi|325510834|gb|ADZ22470.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 217 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++TERE LQ G S+EIA +G+S TV A+L + KL +R +A+AKAI G Sbjct: 152 SITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKG 211 Query: 233 YI 234 I Sbjct: 212 II 213 >gi|15896670|ref|NP_350019.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026518|gb|AAK81359.1|AE007840_3 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] Length = 217 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++TERE LQ G S+EIA +G+S TV A+L + KL +R +A+AKAI G Sbjct: 152 SITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKG 211 Query: 233 YI 234 I Sbjct: 212 II 213 >gi|228996994|ref|ZP_04156626.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|228762735|gb|EEM11650.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 191 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ + + + L+ERE L+L G T+ EIAE L +S TV ++ Sbjct: 100 RVAARVVNEIRAMKQASPDPFSELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVS 159 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL ++R +A A G+ Sbjct: 160 NILSKLHMLDRTKAAVFAWEQGF 182 >gi|209515006|ref|ZP_03263875.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209504632|gb|EEA04619.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 222 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + I S + A ++ + K LT RE L Sbjct: 110 LPRNAMPAEIVASIEAVAAGLCVLTPDILARLLAGTRQPRQKASGEPFEALTSREIEVLA 169 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG ++EIA L +S +TV +L + KL A NR +A+ +R G+I Sbjct: 170 MLADGLGNKEIARHLDISDNTVKFHLSAIFGKLGATNRTEAVMLGMRHGFI 220 >gi|17231260|ref|NP_487808.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75907780|ref|YP_322076.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|3603297|gb|AAC82626.1| two-component response regulator OrrA [Nostoc sp. PCC 7120] gi|17132902|dbj|BAB75467.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75701505|gb|ABA21181.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 240 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 PLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 237 Query: 233 YI 234 + Sbjct: 238 LV 239 >gi|309792814|ref|ZP_07687256.1| regulatory protein LuxR [Oscillochloris trichoides DG6] gi|308225126|gb|EFO78912.1| regulatory protein LuxR [Oscillochloris trichoides DG6] Length = 464 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ERE L+L G ++++IA++L +SV+TV ++ + K ++R +A AI G Sbjct: 6 PISEREREILKLVATGASNQQIAQQLNISVNTVKVHVRNIFSKTGVMSRTEATIYAINHG 65 Query: 233 YI 234 ++ Sbjct: 66 FV 67 >gi|229015963|ref|ZP_04172924.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229022180|ref|ZP_04178730.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228739111|gb|EEL89557.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228745323|gb|EEL95364.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 213 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|229074417|ref|ZP_04207449.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229095286|ref|ZP_04226278.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229101393|ref|ZP_04232137.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228682098|gb|EEL36231.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228688145|gb|EEL42031.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228708701|gb|EEL60842.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 213 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|229114235|ref|ZP_04243656.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228669255|gb|EEL24676.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 213 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|229010064|ref|ZP_04167278.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229136711|ref|ZP_04265367.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228646748|gb|EEL02927.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228751197|gb|EEM01009.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 213 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|229187725|ref|ZP_04314860.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228595717|gb|EEK53402.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|227506297|ref|ZP_03936346.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197109|gb|EEI77157.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 205 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V+ A G L ++ + L+ RE L+ Sbjct: 97 AGALGYLLKDAPEQALHDAVLATAAGKRTLAPEVAALLAERITRPEVALSSRELEILEAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A++L +S TV +L KL R A+ A I Sbjct: 157 ATGKSNKELAQRLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205 >gi|225862611|ref|YP_002747989.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] gi|225789899|gb|ACO30116.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] Length = 213 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|118476319|ref|YP_893470.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415544|gb|ABK83963.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 216 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 152 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 211 Query: 233 YI 234 + Sbjct: 212 LV 213 >gi|312128700|ref|YP_003993574.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor hydrothermalis 108] gi|311778719|gb|ADQ08205.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor hydrothermalis 108] Length = 211 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLT 175 L F +GY++ +S+ + N ++ G + K+ +NLT Sbjct: 94 SLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYISDVLKRTSKQLLEKTQNLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ERE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 154 ERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|222530583|ref|YP_002574465.1| LuxR family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457430|gb|ACM61692.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor bescii DSM 6725] Length = 211 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLT 175 L F +GY++ +S+ + N ++ G + K+ +NLT Sbjct: 94 SLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYISDVLKRTSKQLLEKTQNLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ERE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 154 ERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|186685215|ref|YP_001868411.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467667|gb|ACC83468.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 239 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 LTERELEVLQLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 237 Query: 234 I 234 + Sbjct: 238 V 238 >gi|147678376|ref|YP_001212591.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274473|dbj|BAF60222.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 223 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ + ++ +R LT RE LQL +G +++EIA KL +++ TV A++ Sbjct: 135 IANELLVNLVQGTPRRQHPKNLPLLTLREKEVLQLIVNGLSNKEIAGKLNITLRTVKAHV 194 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S +KL+ +R QA AI+ + Sbjct: 195 SSILMKLNVNDRTQAAVLAIQENLV 219 >gi|229543630|ref|ZP_04432690.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229328050|gb|EEN93725.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 74 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREKEVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|134298790|ref|YP_001112286.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] gi|134051490|gb|ABO49461.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] Length = 119 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+S LT RE L+L G +++ IA++L +S TV +L S KL NR +A Sbjct: 52 RTSNVNQLTNREFELLKLIAKGISNKAIAKQLFISEKTVKNHLTSIYSKLGVTNRTEATL 111 Query: 227 KAI 229 A+ Sbjct: 112 YAV 114 >gi|104782168|ref|YP_608666.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95111155|emb|CAK15875.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 219 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 10/220 (4%) Query: 11 SSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++L EL L ++ A A Y I++ +Q L + Sbjct: 2 ANALDELGRYCLQAFSQQVPASLAAFYRIDAG-----QQACDFLLQDLQAPMHARYLE-R 55 Query: 70 ETYGDDFLF-HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF--PVRLGF 126 D H + P++ + + G+ + + VR Sbjct: 56 YRAFDPLQPGHCLAIGGPVVSLRQGLAHLPQDQGRTYRQFLAQHQVVDVVEIIAQVRGQP 115 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 ++ + + + + +++ LT RE +L Sbjct: 116 RAGISLLRCASLGEFRDAELQRLLPLHGLMQLALASQPLAQNAVPIALTPRERQIAELLR 175 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G +++ IA L + + TV +L + KL NR + +A Sbjct: 176 QGASNKLIARALEVGLPTVKTHLINLFRKLGVSNRTELVA 215 >gi|58583150|ref|YP_202166.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427744|gb|AAW76781.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 214 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 139 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 198 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 199 RDRTRAVLKAFELQLV 214 >gi|89100033|ref|ZP_01172903.1| response regulator [Bacillus sp. NRRL B-14911] gi|89085267|gb|EAR64398.1| response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L +G T++EIA++L +++ TV ++ + KL +R QA+ A Sbjct: 145 PHEELTSREMEILLLMTEGKTNQEIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAF 204 Query: 230 RFGY 233 + Sbjct: 205 KHSL 208 >gi|116672676|ref|YP_833609.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612785|gb|ABK05509.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 250 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++R LT RE L+ +G ++ EIA + LS TV ++ KL +R+Q Sbjct: 173 EQQRDPLLEALTPREMEMLEAMAEGLSNAEIAHRFFLSEATVKTHVRRILAKLHLRDRVQ 232 Query: 224 AIAKAIRFGYI 234 A+ A G + Sbjct: 233 AVVYAYETGLV 243 >gi|126726482|ref|ZP_01742323.1| autoinducer-binding transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126704345|gb|EBA03437.1| autoinducer-binding transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 273 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 68/229 (29%), Gaps = 10/229 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPNIL 68 +++S++E+ Q I L N+ + + Sbjct: 30 EATSIEEVWGAHTATMESYGFDRLLYGFTRYRTARSFGDLQDILTLSNHPKEYLERYLGG 89 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFP---V 122 + + + W+ I E+ + G + V Sbjct: 90 TLYLHGPMVRWLSQNVGACSWRWIDEQRAAGKLSEREIEVHEFNKSMGLVGGYSISFKDV 149 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERET 179 + E I + G+ I + L + A R LT+R+ Sbjct: 150 SDRAKGAIALTARPGLSQDDVEEIWKRDGSDIVTINKVMHLKVTQLPYAGLRRPLTKRQI 209 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ DG T+ + A +GL+ T+ +L A LD QA+ KA Sbjct: 210 EVLEWVADGKTTADAATIMGLTNATIEKHLRLARDVLDVDTTAQAVMKA 258 >gi|284009120|emb|CBA76124.1| LuxR family transcriptional regulatory protein [Arsenophonus nasoniae] Length = 243 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 9/192 (4%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 + + + + + D + + L P W + I ++ ++ Sbjct: 43 DMIIISDLSDELVNNYLNQKTQNIDPVIIKALNQLAPFSWDENIKINSIWPVKKVFEPMK 102 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF-TSEFLMLANEVII-----EAHGACYQVITDFLEL 163 + +G AF + + + +FL+ E I E G L L Sbjct: 103 MLNI--SGYAFVLHDHLNNLALLSLYMDKFLIKDIEFFIKSNKGELQGLLIHTHEMLLSL 160 Query: 164 FKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ ++ + + + RE+ L G T EI L +S +TV ++G+ KL +N Sbjct: 161 YQNENTTEKIIFSPRESEVLYWCSIGKTYSEIGTILNISTYTVKFHIGNVVKKLGVINAK 220 Query: 223 QAIAKAIRFGYI 234 AI+ +++ I Sbjct: 221 HAISLSVKLNLI 232 >gi|239827940|ref|YP_002950564.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808233|gb|ACS25298.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 74 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + + Sbjct: 8 PKPLLTKREREIFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELL 67 Query: 230 RFG 232 R G Sbjct: 68 RMG 70 >gi|220906489|ref|YP_002481800.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863100|gb|ACL43439.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 236 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 ++ + +E+ IE V E + A LTERE LQL +G Sbjct: 134 AGIVLRQTRQSIDSEMGIELQ---ETVNIRATEPEYSQILEASPLTERELEVLQLIVEGD 190 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ IAEKL ++V TV ++ + KL A +R QA +A+R G I Sbjct: 191 SNALIAEKLFITVGTVKTHVRNILNKLCADDRTQAAVRALRSGLI 235 >gi|308067163|ref|YP_003868768.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305856442|gb|ADM68230.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Paenibacillus polymyxa E681] Length = 217 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + +L+ERE L GY ++EIAE L +SV TV ++ + KL R + Sbjct: 145 EGIAGPYESLSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLSLKTRPEL 204 Query: 225 IAKAIRFGYI 234 + A++ G + Sbjct: 205 VKFALKKGLL 214 >gi|306834744|ref|ZP_07467810.1| LuxR family DNA-binding response regulator [Corynebacterium accolens ATCC 49726] gi|304569381|gb|EFM44880.1| LuxR family DNA-binding response regulator [Corynebacterium accolens ATCC 49726] Length = 205 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V+ A L ++ ++L+ RE L+ Sbjct: 97 AGAMGYLLKDSPEEELHEAVLNTAARQRTLAPEVVNLLAQRVGQPEQSLSTRELEILRAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A +L +S TV +L KL R A+ A I Sbjct: 157 ATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205 >gi|254385641|ref|ZP_05000964.1| two component system response regulator [Streptomyces sp. Mg1] gi|194344509|gb|EDX25475.1| two component system response regulator [Streptomyces sp. Mg1] Length = 224 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R+ LTERE + L G ++ EIA +L LS TV ++G KL +R+Q Sbjct: 147 SEPRNKEIERLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQ 206 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 207 VVVLAYETGLV 217 >gi|304404930|ref|ZP_07386590.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345809|gb|EFM11643.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 237 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R +AA LT+RE L+ G +++EI KLG+S +TV +L + KL NR+Q Sbjct: 171 RRTAATPLTDREKEILERVAYGDSNKEIGAKLGISENTVKNHLKNILQKLHLDNRVQLAR 230 Query: 227 KAIRFGY 233 A G Sbjct: 231 YAHEQGI 237 >gi|302518123|ref|ZP_07270465.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318059111|ref|ZP_07977834.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079115|ref|ZP_07986447.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028198|ref|ZP_08456262.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427018|gb|EFK98833.1| two-component system response regulator [Streptomyces sp. SPB78] gi|332748050|gb|EGJ78491.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 37/84 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++ S + LTERE L+L G ++ EIA L +S TV ++G Sbjct: 135 RLLDKYAGHLPSGEEQPPSTLQTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A G + Sbjct: 195 HVLTKLGLRDRVQAAVFAYESGLV 218 >gi|154686976|ref|YP_001422137.1| GerE [Bacillus amyloliquefaciens FZB42] gi|308174538|ref|YP_003921243.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|154352827|gb|ABS74906.1| GerE [Bacillus amyloliquefaciens FZB42] gi|307607402|emb|CBI43773.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|328554460|gb|AEB24952.1| transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328912864|gb|AEB64460.1| transcriptional regulator of spore coat protein [Bacillus amyloliquefaciens LL3] Length = 74 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|119964172|ref|YP_949850.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119951031|gb|ABM09942.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 218 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + V+ A G L + + + L+ RE L+L Sbjct: 107 AGASGYMLKDAPPEQIRQAVLSAAAGQTALAPEVAARLMGRIRNPSPALSGREVQLLELL 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +A++L +S TV +L KL NR AIA A + I Sbjct: 167 ATGMSNRAMAKQLFISEATVKTHLVHIYSKLGVDNRTAAIAVATQRRII 215 >gi|306817801|ref|ZP_07451542.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] gi|304649450|gb|EFM46734.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] Length = 233 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 42/65 (64%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LTERET L+L G T++E+A+KL +S+ TV ++G+ K+ A +R+QA+ A Sbjct: 168 ALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAY 227 Query: 230 RFGYI 234 G + Sbjct: 228 ENGLV 232 >gi|227876856|ref|ZP_03994965.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269977833|ref|ZP_06184790.1| response regulator protein VraR [Mobiluncus mulieris 28-1] gi|227842753|gb|EEJ52953.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269934003|gb|EEZ90580.1| response regulator protein VraR [Mobiluncus mulieris 28-1] Length = 233 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 42/65 (64%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LTERET L+L G T++E+A+KL +S+ TV ++G+ K+ A +R+QA+ A Sbjct: 168 ALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAY 227 Query: 230 RFGYI 234 G + Sbjct: 228 ENGLV 232 >gi|167006408|ref|YP_001661631.1| putative two-component system regulator [Streptomyces sp. HK1] gi|166162490|gb|ABY83611.1| putative two-component system regulator [Streptomyces sp. HK1] Length = 220 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA----RNLTERETSCLQ 183 ++A + A G ++I +F L + + +LTERET + Sbjct: 105 DASADQLAEAVRVIAAGDALLAPGITRRLIAEFSRLDDRPRAPLRQRIEDLTERETEVVA 164 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA++L L+ TV ++G +KL +R QA A G + Sbjct: 165 LIAHGLSNAEIAQRLVLAEQTVKTHVGRILLKLGLRDRTQAAVFAYESGLV 215 >gi|84624990|ref|YP_452362.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711074|ref|ZP_02242281.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575549|ref|YP_001912478.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|289665304|ref|ZP_06486885.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|84368930|dbj|BAE70088.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520001|gb|ACD57946.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 213 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|302524082|ref|ZP_07276424.1| two-component system response regulator [Streptomyces sp. AA4] gi|302432977|gb|EFL04793.1| two-component system response regulator [Streptomyces sp. AA4] Length = 178 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 2/157 (1%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ + + + + + + RL I F I Sbjct: 21 ARYTRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIAAAIAGGARG 80 Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197 L + E A + ++ S LTERE L+ G ++ +I + Sbjct: 81 YLRWDASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRE 140 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV + KL +R QA+A R G + Sbjct: 141 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 177 >gi|296268221|ref|YP_003650853.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091008|gb|ADG86960.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 206 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 12/147 (8%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRL-----GFHKNGYVIFTSEFLMLAN--EVIIEAHGA 152 G + GL + V + G F + + + I H Sbjct: 60 RDGLDVLAELHGLGVRVIVLTSVTGRGEVLPAMRAGAAGFLYKDVDPEALVQAIRAVHEG 119 Query: 153 CYQVITDFLE--LFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + E L + LT RE L+L G ++ EIA +L ++ TV Sbjct: 120 QVLLAPEAAEAVLGGPAAPPGEPEIALTAREREVLRLIAAGRSNREIARELSVAEKTVKT 179 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + +KL +R QA A+R G + Sbjct: 180 HVSNVLMKLGVQDRTQAALYAVRRGLV 206 >gi|167914159|ref|ZP_02501250.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] Length = 306 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 88 LLRLMGFATFAYFALEFMRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 145 Query: 84 LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W Q + G +R+ +G+ + + + + FT+ Sbjct: 146 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 205 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 206 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 264 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 265 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 306 >gi|319787738|ref|YP_004147213.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466250|gb|ADV27982.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 213 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNDFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|320008468|gb|ADW03318.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 218 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181 GY++ + L V A G + + A L+ RE Sbjct: 105 AGATGYLLKDAPREELLTAVRAAADGRTVLSPAVASRLVSRVRTPAAPAREPLSVREREV 164 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L +S TV +L KL A +R A+A A G + Sbjct: 165 LRLVARGTSNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVATAYERGIL 217 >gi|78046817|ref|YP_362992.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289669198|ref|ZP_06490273.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325927244|ref|ZP_08188501.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78035247|emb|CAJ22892.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542364|gb|EGD13849.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 213 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|56421205|ref|YP_148523.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|138896235|ref|YP_001126688.1| germination protein GerE [Geobacillus thermodenitrificans NG80-2] gi|196250193|ref|ZP_03148887.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|261418314|ref|YP_003251996.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297529168|ref|YP_003670443.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319767726|ref|YP_004133227.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|56381047|dbj|BAD76955.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|134267748|gb|ABO67943.1| Germination protein GerE [Geobacillus thermodenitrificans NG80-2] gi|196210377|gb|EDY05142.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|261374771|gb|ACX77514.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297252420|gb|ADI25866.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317112592|gb|ADU95084.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 74 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA++L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREKEVFELLVQDKTTKEIAKELFISEKTVRNHISNAMQKLGVKGRSQAVIELLRMG 70 >gi|219849441|ref|YP_002463874.1| LuxR family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543700|gb|ACL25438.1| transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 508 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ERE L+L G T+++IA L +SV+TV +L + K+ +R +A AIR G Sbjct: 6 PISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVYAIRTG 65 Query: 233 YI 234 + Sbjct: 66 IV 67 >gi|75910715|ref|YP_325011.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704440|gb|ABA24116.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 236 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ RE L+L +G ++ EIAEKL LS +TV ++ KL +R+QA A+R G Sbjct: 175 NLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSG 234 Query: 233 YI 234 + Sbjct: 235 LV 236 >gi|52081342|ref|YP_080133.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52786720|ref|YP_092549.1| GerE [Bacillus licheniformis ATCC 14580] gi|157693255|ref|YP_001487717.1| spore germination protein E [Bacillus pumilus SAFR-032] gi|194017341|ref|ZP_03055953.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|221310782|ref|ZP_03592629.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. 168] gi|221315107|ref|ZP_03596912.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320025|ref|ZP_03601319.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. JH642] gi|221324308|ref|ZP_03605602.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. SMY] gi|255767655|ref|NP_390719.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|296331611|ref|ZP_06874080.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675430|ref|YP_003867102.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|311069333|ref|YP_003974256.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|319647250|ref|ZP_08001472.1| spore germination protein gerE [Bacillus sp. BT1B_CT2] gi|321312374|ref|YP_004204661.1| transcriptional regulator [Bacillus subtilis BSn5] gi|251757272|sp|P11470|GERE_BACSU RecName: Full=Spore germination protein gerE gi|13786948|pdb|1FSE|A Chain A, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786949|pdb|1FSE|B Chain B, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786950|pdb|1FSE|C Chain C, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786951|pdb|1FSE|D Chain D, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786952|pdb|1FSE|E Chain E, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786953|pdb|1FSE|F Chain F, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|2924355|emb|CAA11701.1| GerE [Bacillus subtilis] gi|52004553|gb|AAU24495.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52349222|gb|AAU41856.1| GerE [Bacillus licheniformis ATCC 14580] gi|157682013|gb|ABV63157.1| spore germination protein E [Bacillus pumilus SAFR-032] gi|194011209|gb|EDW20779.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|225185283|emb|CAB14801.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485272|dbj|BAI86347.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|296151206|gb|EFG92086.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413674|gb|ADM38793.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|310869850|gb|ADP33325.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|317390597|gb|EFV71402.1| spore germination protein gerE [Bacillus sp. BT1B_CT2] gi|320018648|gb|ADV93634.1| transcriptional regulator [Bacillus subtilis BSn5] Length = 74 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|297161250|gb|ADI10962.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 238 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 G V+ ++ L + AA LTERE L+L G + ++IAE+L +S T Sbjct: 146 GLAGLVLGEYRRLATDPAPAAPDRPVAPRLTEREKEVLRLVAKGLSYKQIAERLVISHRT 205 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V ++ + KL NR++ + AI G Sbjct: 206 VQNHVQNTLGKLQLHNRVELVRYAIERGL 234 >gi|290961675|ref|YP_003492857.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260651201|emb|CBG74322.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + +R+ + + +L + ++ LT+R Sbjct: 114 LVQAIRVVAGGEAMLAPSITRRLLD------------KYAEHLPSGDEQVPDTLHTLTDR 161 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L G ++ EIA L +S TV ++G KL +R+QA A G + Sbjct: 162 EVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|148655092|ref|YP_001275297.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567202|gb|ABQ89347.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 242 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179 + + L N+ +I +V+ F EL ++ S+ LT RE Sbjct: 110 HPRDLVRMIREVARGKYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREI 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 170 EILDCIARGLSNKEIASQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224 >gi|124381986|ref|YP_001023905.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126442536|ref|YP_001061999.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126447520|ref|YP_001078722.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|134279276|ref|ZP_01765989.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|237508465|ref|ZP_04521180.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|251766848|ref|ZP_04819839.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|254183039|ref|ZP_04889631.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254200625|ref|ZP_04906990.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254356552|ref|ZP_04972827.1| transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|124290006|gb|ABM99275.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] gi|126222027|gb|ABN85532.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126240374|gb|ABO03486.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|134249695|gb|EBA49776.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748237|gb|EDK55312.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|148025579|gb|EDK83702.1| transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|184213572|gb|EDU10615.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|235000670|gb|EEP50094.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|243064620|gb|EES46806.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] Length = 319 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 101 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 158 Query: 84 LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W Q + G +R+ +G+ + + + + FT+ Sbjct: 159 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 218 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 219 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 277 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 278 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 319 >gi|297159285|gb|ADI08997.1| two component LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182 G+++ +E L + V A G L + + + LTERE L Sbjct: 96 RAGAIGFLLKNAEADELRSAVKGAAAGRIQVSPDATSRLMGQVRAPSGPEQLTEREAEVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G +++EIA L + TV Y+ KL +R QA A++ G + Sbjct: 156 TMLARGKSNKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207 >gi|288573855|ref|ZP_06392212.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569596|gb|EFC91153.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 222 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 32/70 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R L+ERE L G +EIAE+L LS TV ++ KL +R Q Sbjct: 143 DTSRERGMSRLSERELEVLYWLAQGLNGQEIAERLSLSDKTVKNHISHILAKLKVSDRTQ 202 Query: 224 AIAKAIRFGY 233 A+A A R G Sbjct: 203 AVAWAWRSGL 212 >gi|333027751|ref|ZP_08455815.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332747603|gb|EGJ78044.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 216 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 34/232 (14%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + ++A F L R+ D + L Sbjct: 3 VDDHPMWRDAVARDLEAAGFELVATAGDGPQAVRRATAT-----RPDVLVLDLNLPGL-- 55 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ +L V + A + V+ G Sbjct: 56 -PGVEVCKR--------------LVGERPELHVLVLSASGEHADVLEAVKSGATGYLVKS 100 Query: 134 FTSEF--LMLANEVIIEAHG---ACYQVITDFLELFKKRSS-------AARNLTERETSC 181 ++E + + +A V+ ++ L + LTERET Sbjct: 101 ASTEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPETPRLTERETEV 160 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 161 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 212 >gi|328881294|emb|CCA54533.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L ++ Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYSAHLPTGEEQVPDTLS 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|124006802|ref|ZP_01691632.1| two-component response regulator [Microscilla marina ATCC 23134] gi|123987483|gb|EAY27192.1| two-component response regulator [Microscilla marina ATCC 23134] Length = 208 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L+ RE L +G +++EIA+KL +S TV+ + + KL+ N +Q + A Sbjct: 143 PSIPQLSAREKEVLHFLVEGLSNKEIADKLFISSKTVDNHRANILKKLNLKNNVQLVRFA 202 Query: 229 IRFGYI 234 + + Sbjct: 203 LEHKLV 208 >gi|76667926|dbj|BAE45354.1| two component response regulater [Bacillus subtilis] Length = 229 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ DG ++ I E L +S V ++ + K++ +R QA+ AI Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKAVKNHVSNILQKINVNDRTQAVVVAI 221 Query: 230 RFGYI 234 + G++ Sbjct: 222 KNGWV 226 >gi|325576790|ref|ZP_08147405.1| nitrate/nitrite response regulator protein NarL [Haemophilus parainfluenzae ATCC 33392] gi|325160996|gb|EGC73114.1| nitrate/nitrite response regulator protein NarL [Haemophilus parainfluenzae ATCC 33392] Length = 209 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I +V++E Q Sbjct: 72 LRAEGVDARILILTVSDAKNDIFTLIDAGADGYLLKDTEPDVLLEQIKRIAQGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L K +LT+RE L+L G ++++IA +L +S TV ++ + KL Sbjct: 132 IKNLLLERKHTVDPMDSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 192 NVHSRVAATVL 202 >gi|322377077|ref|ZP_08051569.1| DNA-binding response regulator VraR [Streptococcus sp. M334] gi|321281790|gb|EFX58798.1| DNA-binding response regulator VraR [Streptococcus sp. M334] Length = 210 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|294812171|ref|ZP_06770814.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|326440673|ref|ZP_08215407.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324770|gb|EFG06413.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%) Query: 151 GACYQVITDFLELFKKRSSA-------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G V+ ++ L + + A LT+RET L+L G + ++IAE+L +S Sbjct: 136 GLAGLVLGEYRRLAGEPAPTPGGPEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVISHR 195 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 196 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 225 >gi|302518272|ref|ZP_07270614.1| two component response regulator [Streptomyces sp. SPB78] gi|318062320|ref|ZP_07981041.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079406|ref|ZP_07986738.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028052|ref|ZP_08456116.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427167|gb|EFK98982.1| two component response regulator [Streptomyces sp. SPB78] gi|332747904|gb|EGJ78345.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 226 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRS--SAARNLTERE 178 +R G Y E L A + H +V L ++ +LTERE Sbjct: 110 LRAGAAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVAGMLLAQEEQAPQQPRGGSLTERE 169 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R GY Sbjct: 170 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGY 224 >gi|152974058|ref|YP_001373575.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022810|gb|ABS20580.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 220 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R Q Sbjct: 147 EQSVPNQIEQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLIGKLELRDRTQ 206 Query: 224 AIAKAIRFGY 233 A A+R+G Sbjct: 207 AAIYAVRYGI 216 >gi|126660738|ref|ZP_01731836.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126617979|gb|EAZ88750.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 245 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + L + + +LT +E L+L G + +IAE+L ++V TV ++ S Sbjct: 163 HQMREIDALDEDTQQMINSSSLTPKELEVLELIVAGCNNAQIAERLFVTVGTVKTHVRSI 222 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL A +R QA +A+R G + Sbjct: 223 LNKLCANDRTQAAVRALRSGLV 244 >gi|304406459|ref|ZP_07388115.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344517|gb|EFM10355.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 220 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Query: 139 LMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTS 191 + + +E H A +++ E R LT+RE L+L G ++ Sbjct: 116 IRRVWQGQVELHPDAASRLMNILAEPESNRDDPDEAAKRLSELTKREHEVLRLIATGMSN 175 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +EI + L ++ TV ++ KL +R QA A++ G Sbjct: 176 KEIGDSLSITEKTVKTHVSHVLEKLGFADRTQAAIFAVKQGI 217 >gi|221065714|ref|ZP_03541819.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220710737|gb|EED66105.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 254 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+L G + EI L +S TV+ ++ + K+ R QA+ A+ Sbjct: 192 EPLTEREKEVLRLIAQGKRTHEIGSYLKISTLTVSTHVKNIYRKMQVRTRAQAVRYAVLK 251 Query: 232 GYI 234 G I Sbjct: 252 GII 254 >gi|306825821|ref|ZP_07459160.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432182|gb|EFM35159.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 210 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|294666925|ref|ZP_06732155.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603297|gb|EFF46718.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|258622070|ref|ZP_05717096.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585394|gb|EEW10117.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 224 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 71/238 (29%), Gaps = 30/238 (12%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S S+S+ + L I ++I + IC H + Sbjct: 9 LSNQLRCADNSTSIHDWFDELK---KDISFE----FSILGIFGEHYSLEPIC--HGFSPT 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D F+ F I+ + + +L L G I Sbjct: 60 QFSTCFGNKRPENDPFVAAFQQSGQGIM-ALMDPYNHPDYGKRLL--LAGQHGEKKAIFL 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLT 175 +++ I + + + + LT Sbjct: 117 TSFGN-------------RHPSSDEIDTLYLLTPHLYLASDSIAHQSQQLHLPPPLNPLT 163 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 164 DRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|269126536|ref|YP_003299906.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311494|gb|ACY97868.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 226 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + + + + LTERE L+ G ++ EIA +L +S TV ++ Sbjct: 136 RLLDKFASRLPSMRQTPPPPGLETLTEREREVLKHVARGLSNAEIARELVVSETTVKTHV 195 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 G+ KL +R+QA+ A G Sbjct: 196 GNVLAKLGLRDRVQAVVYAYETGM 219 >gi|21241983|ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107378|gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 214 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 139 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 198 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 199 RDRTRAVLKAFELQLV 214 >gi|304407706|ref|ZP_07389357.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304343189|gb|EFM09032.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I+FG Sbjct: 179 PLTRREAEVLRLMAEGKSNKTIGEFLFISEKTVKNHVSSILQKMEVDDRTQAVIHSIKFG 238 Query: 233 YI 234 ++ Sbjct: 239 WV 240 >gi|312200532|ref|YP_004020593.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231868|gb|ADP84723.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 214 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAA 171 + + GY++ +E +A + A +V+ F + + Sbjct: 88 SVFAAMRAGARGYLLKGAERQEIARSLRAVAAGEVVFSAAIASRVLAWFATGGRSALAPF 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L G T+ IA +L LS TV ++ + KL +R +A+A+A Sbjct: 148 PELTDREREILDLVARGLTNPAIARRLFLSDKTVRNHVSNVFAKLQVADRAEAVARARDA 207 Query: 232 GY 233 G Sbjct: 208 GL 209 >gi|302528110|ref|ZP_07280452.1| two-component system response regulator [Streptomyces sp. AA4] gi|302437005|gb|EFL08821.1| two-component system response regulator [Streptomyces sp. AA4] Length = 208 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S L V A G + + R+ A L++RE L L Sbjct: 97 AGATGYLLKDSPREELFRAVRAAARGEAVLSPAVASRIMGQMRAPAQEPLSQREIEVLNL 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++E A+KL +S TV +L A KL +R A+A A G + Sbjct: 157 VARGSTNKEAAKKLFISEATVKTHLLHAYAKLGVKDRAAAVAVAFERGLL 206 >gi|256420108|ref|YP_003120761.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035016|gb|ACU58560.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 234 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 24/236 (10%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 EN L + SL+ L + N++ + + ++ Y L Sbjct: 18 KENELLKTRIQSLESLLDHFPAM---------LYTHQNNSKTINWCNRYMEDVTGYTLA- 67 Query: 62 GDIPNILIETYGDDF--LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF--AG 117 + D F + H + L +I Q +E G L R G G Sbjct: 68 -----EMNSLGLDFFKKVMHPDDFELAVIAQQSFKENKNVFGGVLRFRKRGAENWRWLTG 122 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 IA P + + + + ++ + + + D + +K LT R Sbjct: 123 IAIPYSRDEAGGVKEVICA---FVDMTMAMDTNDQLTEAMLDVMR--RKHEDLISKLTPR 177 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+L G ++EIA +L LS +T+ + + +KL N + IA A + GY Sbjct: 178 EKDILKLTVKGLNNKEIAAELNLSRYTIETHRKNIRIKLKVRNTTELIALARKVGY 233 >gi|220935339|ref|YP_002514238.1| two component transcriptional regulator, LuxR family [Thioalkalivibrio sp. HL-EbGR7] gi|219996649|gb|ACL73251.1| two component transcriptional regulator, LuxR family [Thioalkalivibrio sp. HL-EbGR7] Length = 227 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT RE L L +G +++ IA LG+S TV ++ + KL +R++A Sbjct: 146 EPSPFDELTPREGEILALLAEGQSNKVIARNLGISDGTVKLHVKAILRKLGVHSRVEAAV 205 Query: 227 KAIRFGY 233 A++ G Sbjct: 206 LAVQQGL 212 >gi|205372669|ref|ZP_03225480.1| hypothetical protein Bcoam_04270 [Bacillus coahuilensis m4-4] Length = 223 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%) Query: 157 ITDFLELFKKRSSAAR-----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +T L L K+++ + LTERE L G G + EIAE L ++ TV Sbjct: 130 LTAQLFLDKRKTPPSDFEPVGQPVDRSLLTEREWGVLSELGKGLNNREIAEALYITEGTV 189 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL+ +R QA A+R G Sbjct: 190 KNHVSNIISKLEVRDRTQAAIYAVRHGI 217 >gi|21221817|ref|NP_627596.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256787004|ref|ZP_05525435.1| two component system response regulator [Streptomyces lividans TK24] gi|289770897|ref|ZP_06530275.1| two component system response regulator [Streptomyces lividans TK24] gi|4585835|emb|CAB40929.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289701096|gb|EFD68525.1| two component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ + + + R + LTERE + L G ++ Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPML---PATGQEPRQKELQRLTEREREVMVLVAQGMSNG 175 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L LS TV ++G KL +R+Q + A G + Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|294627058|ref|ZP_06705648.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598720|gb|EFF42867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 213 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|119960873|ref|YP_948224.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119947732|gb|ABM06643.1| putative two-component system response regulator [Arthrobacter aurescens TC1] Length = 237 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 +F + ++ + + T E + ++A LT RE QL G ++ Sbjct: 133 VFRGDAVIAPSTTRRLLDHVAPLLRTQTPEQTEH-AAAVERLTAREREVFQLIAQGQSNP 191 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L LS TV ++G KL A +R+Q + A G + Sbjct: 192 EIAAGLFLSEATVKTHVGHILAKLGARDRVQVVVIAYETGVV 233 >gi|239928815|ref|ZP_04685768.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437136|ref|ZP_06576526.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340031|gb|EFE66987.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 217 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181 GY++ + L V A G + R++ L+ RE Sbjct: 104 AGATGYLLKDAPREELFTAVRAAADGRTVLSPAVASRLVCAVRAPRTAGGEPLSAREREV 163 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA +L +S TV +L KL +R A+A A G + Sbjct: 164 LALVARGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYDRGIL 216 >gi|309792037|ref|ZP_07686513.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225930|gb|EFO79682.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +V+ F EL ++ S LT RE L G +++EIA +L +S TV Sbjct: 132 VATRVLHQFRELAATEDEQTSVLFAPLTSREIEILDCIARGLSNKEIANELSISGQTVKN 191 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S KL +R A+ AI+ G++ Sbjct: 192 HITSILSKLQVNDRTMAVIYAIKRGWV 218 >gi|304406658|ref|ZP_07388313.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344191|gb|EFM10030.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 222 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q +T L + A LTERE L L DG ++EIAE+L +S+ TV ++ + + Sbjct: 140 QALTRGLR-QRSAQGADEGLTEREKEVLLLIADGMANKEIAEELHISIKTVKTHVSNLLM 198 Query: 215 KLDAVNRIQAIAKAIRFGY 233 K + +R Q A R G+ Sbjct: 199 KCELEDRTQLAVYAHRKGW 217 >gi|307708226|ref|ZP_07644693.1| response regulator [Streptococcus mitis NCTC 12261] gi|307615672|gb|EFN94878.1| response regulator [Streptococcus mitis NCTC 12261] Length = 210 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|306828929|ref|ZP_07462121.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304429107|gb|EFM32195.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 210 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A A Q ++ +E + LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVASGELAIEQEVSKKVEYHRNHIELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|172037280|ref|YP_001803781.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698734|gb|ACB51715.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 247 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 41/83 (49%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V+ + + + L+ERE L+L +G ++ EIAE L LS +T+ ++ Sbjct: 165 IARLVLDNLKSPNPEPNQNIALLSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRG 224 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 225 IMNKLAVDDRVQAAVVALRSGLV 247 >gi|119898377|ref|YP_933590.1| putative transcriptional activator protein [Azoarcus sp. BH72] gi|119670790|emb|CAL94703.1| putative transcriptional activator protein [Azoarcus sp. BH72] Length = 251 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 19/240 (7%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +S+ L+ L L + +F L+T + F + L+C + G + Sbjct: 8 ESADLERLHFALEASIRVARRSHFFLWTQGALQCFLPHETLLCASSGAEQTPGTQD-VFS 66 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-----------GGLLPFAGI 118 + + + + +++ + L + GG L GI Sbjct: 67 RLLIPPRVEYILTEPGAPVVGGLRQAWLQAGRAPLVLPAAPLRTAVPELACGGELLCHGI 126 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----L 174 A G + + +F A + L + + +AA L Sbjct: 127 A---GHGAAPSTFFVFIGLPAPPGPRERYLAELLMPHLHLALLRMREGEHAAAGASPALL 183 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L DG T+++I E L +S TV ++ KL A NR QA+A + G I Sbjct: 184 SGRELQVLGCMRDGLTNQQIGEVLEISALTVKNHVQRILRKLRAANRAQAVANGVAAGLI 243 >gi|327472699|gb|EGF18126.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 210 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|219667288|ref|YP_002457723.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537548|gb|ACL19287.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 215 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 41/96 (42%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +A I ++ K + +A NLTERE L+ GYT++EI E L Sbjct: 118 RDVAGGEIYLDSSLAQNLVKSMYSPRKDNNRSASNLTEREKEVLRYIALGYTNKEIGESL 177 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +SV TV + K+ R + AI GYI Sbjct: 178 SVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYI 213 >gi|294630642|ref|ZP_06709202.1| two-component system response regulator [Streptomyces sp. e14] gi|292833975|gb|EFF92324.1| two-component system response regulator [Streptomyces sp. e14] Length = 223 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 QRLTEREREVMTLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|172039086|ref|YP_001805587.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700540|gb|ACB53521.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 265 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R G Sbjct: 203 PLTDREFDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRSG 262 Query: 233 YI 234 + Sbjct: 263 LV 264 >gi|119513102|ref|ZP_01632155.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462236|gb|EAW43220.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 240 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L ++ LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A Sbjct: 164 EALASEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCA 223 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA +A+R G + Sbjct: 224 DDRTQAAVRALRSGLV 239 >gi|29831224|ref|NP_825858.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608339|dbj|BAC72393.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTDREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|315634983|ref|ZP_07890264.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter segnis ATCC 33393] gi|315476245|gb|EFU66996.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter segnis ATCC 33393] Length = 209 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I + ++ Q Sbjct: 72 LRAEDVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIAQGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + S +LT+RE L+L G ++++IA +L +S TV ++ + KL Sbjct: 132 IKNLLLERQSSQSPIDSLTDREIDVLRLVATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A Sbjct: 192 NVHSRVAATVLYFEH 206 >gi|254193253|ref|ZP_04899688.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|169650007|gb|EDS82700.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] Length = 319 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 101 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 158 Query: 84 LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W Q + G +R+ +G+ + + + + FT+ Sbjct: 159 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 218 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 219 RSRDWISSATLEQVLSL-GLSVHRFAAPQLVASARERAAERLTPFERELLVGIAEGASDK 277 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 278 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 319 >gi|258654718|ref|YP_003203874.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557943|gb|ACV80885.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 207 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + L V A G L ++ + +L+ RE L+ Sbjct: 97 AGASGYLLKGAPPDELLLAVRSAAAGESALAPPIASRLLERLRTPQTSLSPREIEVLERV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA +L ++ TV ++L KL +R A++ A G + Sbjct: 157 AAGRSNGEIARELVITEQTVKSHLVHIYTKLGVSSRTAAVSLARERGIL 205 >gi|70730988|ref|YP_260729.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345287|gb|AAY92893.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 240 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 21/229 (9%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 E+ L N + ++ D +++ + +Y D Sbjct: 24 DEIRTELERETNHTE------FSFILRSDLKSHSKVVYNIDSYSYAWRRDYEAEKFWIVD 77 Query: 75 DFLF-HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 L H + P IW E+ L ++ +G++ + F G + Sbjct: 78 PILKIHSPTPYFPTIWSDDFIESK------LFLQAGKDYGFLSGMSIGLPCSFGNYGVLS 131 Query: 134 FTSEF-------LMLANEV-IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 S L +++ + I L + + + L +RE L+ Sbjct: 132 IASLKQGSLQGVDPLDWSACVLKVYAKLIDYINRQHSLQRIFNDHQQALNDREIDILRYT 191 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S +IA ++ LS +++ ++ KLD+ N+ QA+A AI+ G I Sbjct: 192 ADGMSSTDIAMRMHLSKSSIDYHIAKILQKLDSPNKHQALALAIKKGKI 240 >gi|21220150|ref|NP_625929.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|256788738|ref|ZP_05527169.1| two-component response regulator [Streptomyces lividans TK24] gi|289772632|ref|ZP_06532010.1| two-component system response regulator [Streptomyces lividans TK24] gi|6119696|emb|CAB59507.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] gi|289702831|gb|EFD70260.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + T + LT+RE L+L G ++ EIA L +S TV ++G Sbjct: 135 RLLDKYATHLPSGDEPVPDTLHTLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A G + Sbjct: 195 HVLTKLGLRDRVQAAVYAYESGLV 218 >gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 231 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 6/224 (2%) Query: 14 LQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70 + + +++ ++ F++ N+ + Q + + + D L + Sbjct: 8 VDDEPGIREAVKDYLQESGFSVQVASNALEGWEWMQMNTPDLVISDVMMPQVDGYQFLKQ 67 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + + + + + + L P +A L + Sbjct: 68 LREDPRFQALPVVF--LTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLLARRAA 125 Query: 131 YVIFTSEFLM-LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 T + + ++T + + + +LT RE S L L +G Sbjct: 126 KTTTTGDDAETPDLAELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVAEGL 185 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++EIA +L SV V Y+ K +R + + A+ G Sbjct: 186 MNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|322374884|ref|ZP_08049398.1| DNA-binding response regulator VraR [Streptococcus sp. C300] gi|321280384|gb|EFX57423.1| DNA-binding response regulator VraR [Streptococcus sp. C300] Length = 210 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVASGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|156741561|ref|YP_001431690.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232889|gb|ABU57672.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 242 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179 + + L N+ +I +V+ F EL ++ S+ LT RE Sbjct: 110 HPRDLVRMIREVARGKYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREI 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 170 EILDCIARGLSNKEIATQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224 >gi|220932886|ref|YP_002509794.1| regulatory protein LuxR [Halothermothrix orenii H 168] gi|219994196|gb|ACL70799.1| regulatory protein LuxR [Halothermothrix orenii H 168] Length = 887 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L L +G +++EIA+KL ++V T ++ + KL R QAI KA++ Sbjct: 816 EPLSERELEILGLIVNGLSNKEIAKKLYITVGTTKWHISNIYGKLGVNKRAQAIKKALQL 875 Query: 232 GYI 234 I Sbjct: 876 ELI 878 >gi|15613763|ref|NP_242066.1| two-component response regulator [Bacillus halodurans C-125] gi|10173816|dbj|BAB04919.1| two-component response regulator [Bacillus halodurans C-125] Length = 209 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL-ELFKKRSSAARNLTERETSC 181 Y++ TS +A+ + A+G +V + + ++ LT RE Sbjct: 96 AGAFSYLLKTSSAKEIASAIRAAANGEAVVEAKVTNKMMERMRSRKKELHEELTPRELEV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G+G +++ IA++L + + TV ++ + KL +R Q A R + Sbjct: 156 LRLIGEGKSNQGIADELYIGIKTVKTHVSNILHKLQLEDRTQIAVYAHRHRLV 208 >gi|186683493|ref|YP_001866689.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465945|gb|ACC81746.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 206 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETS 180 L G + TS L + E I + + L + +K + + LT RE Sbjct: 91 LRSGIRGILPSTSTELEIVAAVEAIAFGLVVLHPDAIELLSIREKVVANPVQTLTPREIE 150 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + G G ++ +A++L +S HTV +L S KL +R +A+A +R G I Sbjct: 151 VLGMLGSGLGNKAMAKRLQISEHTVKFHLSSIFQKLSVSSRTEAVAVGVRLGLI 204 >gi|307700594|ref|ZP_07637626.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] gi|307614239|gb|EFN93476.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] Length = 233 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 42/65 (64%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LTERET L+L G T++E+A+KL +S+ TV ++G+ K+ A +R+QA+ A Sbjct: 168 ALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAY 227 Query: 230 RFGYI 234 G + Sbjct: 228 ENGLV 232 >gi|166364716|ref|YP_001656989.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|159030578|emb|CAO88241.1| luxR [Microcystis aeruginosa PCC 7806] gi|166087089|dbj|BAG01797.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 210 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 42/83 (50%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V+ + + + L+ERE L+L +G ++ EIAE+L LS +T+ ++ Sbjct: 128 IARLVMDNLKPPAVQPNPNLALLSEREMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRG 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 188 IMNKLAVDDRVQAAVIALRSGIV 210 >gi|29833213|ref|NP_827847.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610335|dbj|BAC74382.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|227545988|ref|ZP_03976037.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213622|gb|EEI81471.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517050|emb|CBK70666.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum subsp. longum F8] Length = 296 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 231 PELDLLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 290 Query: 229 IRFGYI 234 G + Sbjct: 291 YDNGLV 296 >gi|224476942|ref|YP_002634548.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421549|emb|CAL28363.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 205 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A + H +V+ +R+ LT+RE Sbjct: 91 LDAGVDSYILKTTSASDIAEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTDREME 150 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 151 ILLLIANGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 204 >gi|167565359|ref|ZP_02358275.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 334 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 67/222 (30%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + I + D L D + + Sbjct: 116 LLRLMGFATFAYFAIEFSRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 173 Query: 84 LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W + + + +R+ +G+ + + + + +T+ Sbjct: 174 SMPVVWDLRQLARDHASRGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRMHAFASYTAPR 233 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 234 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASSRERAAERLTPFERELLVGIAEGASDK 292 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 293 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 334 >gi|302546669|ref|ZP_07299011.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|307330767|ref|ZP_07609903.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|302464287|gb|EFL27380.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] gi|306883570|gb|EFN14620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 223 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPATELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|319795995|ref|YP_004157635.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598458|gb|ADU39524.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 245 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 63/227 (27%), Gaps = 17/227 (7%) Query: 15 QELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 ++ RL + + + A FA + N+ + N D + D + Sbjct: 25 SDVRERLGWALLDLLHADQFASFVWNAESGRFDGR----VALNMDPANLDRYGEWH-QHH 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D F S + + + + G+ G G + Sbjct: 80 DPITFVLQSHRRATRVTDVMPQRELM-QTEFFTDFLSRDGLHWGMNLHAFEGSRALGDLR 138 Query: 134 FTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAA-----RNLTERETSCLQ 183 +A A + A +L+ RE + Sbjct: 139 IWRRKGRGDFGEHEKALLDLIEPAFIGALQRAQRTAAAVPMPAGTASWDDLSAREQEVAR 198 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +G T +EIA ++ +SV TV YL KL R A R Sbjct: 199 AVCEGLTDKEIARRMAVSVPTVRTYLRRIFDKLGIERRSALAGLAQR 245 >gi|57233907|ref|YP_182061.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224355|gb|AAW39412.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 225 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 40/78 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 D L K S+ LT R+ L L +G T+++IA L +S T+ ++ + KL Sbjct: 146 FQDVSLLGKDASNFVTPLTNRKKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKL 205 Query: 217 DAVNRIQAIAKAIRFGYI 234 +A +R A+ AIR G I Sbjct: 206 NANDRAHAVVVAIRCGLI 223 >gi|227543314|ref|ZP_03973363.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227180927|gb|EEI61899.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 212 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + LT RE L+L G +++EI L LS TV ++L KLDA +R Sbjct: 140 RLMTRVRGPKTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSR 199 Query: 222 IQAIAKAIRFGYI 234 A+A A G + Sbjct: 200 TAAVAAAREQGVL 212 >gi|114565755|ref|YP_752909.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336690|gb|ABI67538.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 213 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ + + ++S LT+RE L L G T++E+AE + +S TV +L Sbjct: 129 RVANRLVRELRQSENRKS--EIRLTKREKDVLTLLVKGNTNKEMAEVMFISEKTVKNHLT 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL +R A A++ + Sbjct: 187 SIFRKLGVKDRTHAAIYALKNRIV 210 >gi|290957262|ref|YP_003488444.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646788|emb|CBG69885.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181 GY++ + L V A G + R+ + L+ RE Sbjct: 111 AGATGYLLKDAPREELFTAVRAAAEGRTVLSPAVASRLVTAVRSPRTPGSEPLSAREREV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G + EIA +L +S TV +L KL +R A+A A G + Sbjct: 171 LALVARGTANREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 223 >gi|37223250|gb|AAQ90227.1| LuxR [Photobacterium leiognathi] Length = 217 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 11/198 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + F + + H ++ ++ ++ + + +LT+RE CL A Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYXKINIANNKSNNDLTKREKECLAWA 196 Query: 186 GDGYTSEEIAEKLGLSVH 203 +G +S + ++ LG S Sbjct: 197 CEGKSSWDSSKILGCSER 214 >gi|152976905|ref|YP_001376422.1| response regulator receiver protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025657|gb|ABS23427.1| response regulator receiver protein [Bacillus cytotoxicus NVH 391-98] Length = 74 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|218781259|ref|YP_002432577.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762643|gb|ACL05109.1| transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 287 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ LT RE L+L +G+T+ EI++ L +S HTV +++ KL +R Q Sbjct: 217 DPVQAPFGETLTTREIQVLRLMAEGFTNGEISDMLEISPHTVKSHVIHVFNKLGVNDRTQ 276 Query: 224 AIAKAIRFGYI 234 A A + + Sbjct: 277 AAVWAAKNNLV 287 >gi|322688905|ref|YP_004208639.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|320460241|dbj|BAJ70861.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 299 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 234 PELDLLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 293 Query: 229 IRFGYI 234 G + Sbjct: 294 YDNGLV 299 >gi|226365940|ref|YP_002783723.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244430|dbj|BAH54778.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 220 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---LELFKKRSSAARNLTERETSCLQL 184 ++A+ + A ++I D +++ +A LT RE L+L Sbjct: 108 DAPAEELIRAVRVVADGEALLAPTVTRRLIADVTSRRSTARRKPAALSALTPREREVLEL 167 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE+L ++ TV ++G KLD +R QA+ A G + Sbjct: 168 IARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217 >gi|84387471|ref|ZP_00990490.1| response regulator [Vibrio splendidus 12B01] gi|84377724|gb|EAP94588.1| response regulator [Vibrio splendidus 12B01] Length = 210 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + +IE + V++ +L + Sbjct: 81 VILTVSDSPADIEAIVKAGADGYLLKDTEPDELIELLKQAHHGDKAYSSVVSRYLNDAES 140 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LTERE LQ GY +++IA+ L +S TV ++ S KL +R A Sbjct: 141 RNDIFDQLTEREMQILQEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATV 200 Query: 227 KAIRF 231 + Sbjct: 201 LYLER 205 >gi|332202293|gb|EGJ16362.1| response regulator [Streptococcus pneumoniae GA41317] Length = 210 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|326440245|ref|ZP_08214979.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 224 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + +LT+RE L+L G ++ EIA L +S TV ++G Sbjct: 135 RLLDKYAGHLPSGEEPVPDTLNSLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A G + Sbjct: 195 HVLTKLGLRDRVQAAVYAYESGLV 218 >gi|325686912|gb|EGD28936.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 210 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|149183304|ref|ZP_01861745.1| transcriptional regulator [Bacillus sp. SG-1] gi|148848997|gb|EDL63206.1| transcriptional regulator [Bacillus sp. SG-1] Length = 74 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREKEVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|52424333|ref|YP_087470.1| CitB protein [Mannheimia succiniciproducens MBEL55E] gi|52306385|gb|AAU36885.1| CitB protein [Mannheimia succiniciproducens MBEL55E] Length = 226 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----VITD 159 L + + V +I + ++ Q + Sbjct: 89 LRQEGVDARIVILTVSDSKADIYALIDAGADGYLLKDTEPDTLLAQIKQIAQGEIILSDS 148 Query: 160 FLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L +R A LT+RE LQL G ++++IA +L +S TV ++ + KL Sbjct: 149 IKNLLVERHPAHEPIHALTDREMDVLQLIATGLSNKQIAAQLFISEETVKVHIRNLLRKL 208 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 209 NVHSRVAATVL 219 >gi|319652028|ref|ZP_08006149.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317396319|gb|EFV77036.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 217 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G+++++IAE+L +SV TV + G+ KL R + +A A++ G Sbjct: 153 LSDREKEVLTLIAKGFSNKDIAEQLVISVKTVETHKGNLMEKLQMKTRPELVAYALKKGL 212 Query: 234 I 234 + Sbjct: 213 L 213 >gi|289168573|ref|YP_003446842.1| response regulator [Streptococcus mitis B6] gi|288908140|emb|CBJ22981.1| response regulator [Streptococcus mitis B6] Length = 210 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGKLAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|166007196|pdb|2RNJ|A Chain A, Nmr Structure Of The S. Aureus Vrar Dna Binding Domain Length = 91 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 KKR+ LTERE L L GY+++EIA +++ TV ++ + KL+ +R Q Sbjct: 20 MKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQ 79 Query: 224 AIAKAIRFGYI 234 A+ A + I Sbjct: 80 AVIYAFQHNLI 90 >gi|324994067|gb|EGC25981.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327459273|gb|EGF05619.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327490491|gb|EGF22272.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] Length = 210 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|300787377|ref|YP_003767668.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796891|gb|ADJ47266.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 48/111 (43%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG GYV+ L V A G L + S +LT RE ++ Sbjct: 102 LGAGARGYVLKAGPPEELFRAVRSAAAGGLGLAPEIVDGLVGQVVSPDPDLTTREIEVIR 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ IAE L LS TV +L KL A NR A+++A+R G + Sbjct: 162 LLASGRSNRAIAEALFLSEATVKTHLVRIYRKLGADNRAAAVSEAVRRGLL 212 >gi|289679671|ref|ZP_06500561.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] Length = 160 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 3/162 (1%) Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + + + L + WQ + + + L I++ V Sbjct: 1 QDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDALVDTCELLPAISYGYTNHCRGADSV 57 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + E ++ + + +R LT RE LQ A DG T+ Sbjct: 58 TSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWARDGKTAW 117 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 118 EISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 159 >gi|229004659|ref|ZP_04162396.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228756547|gb|EEM05855.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] Length = 191 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ + + + L+ERE L+L G T+ EIAE L +S TV ++ Sbjct: 100 RVAARVVNEIRAMKQASPYPFSELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVS 159 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL ++R +A A G+ Sbjct: 160 NILSKLHMLDRTKAAVFAWEQGF 182 >gi|134098288|ref|YP_001103949.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004292|ref|ZP_06562265.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910911|emb|CAM01024.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 225 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + LT+RE L G ++ EIA+ L ++ TV +++ Sbjct: 136 RRLIEHFSRTAAPPITNPPRLDVLTDREREVLVHVARGLSNTEIADALFIAEQTVKSHVS 195 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA+ A G + Sbjct: 196 RILGKLGVRDRVQAVVVAYETGLV 219 >gi|116621307|ref|YP_823463.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224469|gb|ABJ83178.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 207 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 7/154 (4%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 + + ++ + IA G + L +V+ Sbjct: 52 DVSLLDLRMPGIGGVEAAIAIRAEFGGARMIALTTYGGDEDIRRALAAGVQAYLTKDVLH 111 Query: 148 EAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + + + +L+ RE L L G +++IA L + Sbjct: 112 DELIKAIRAVHAGQTYLPAAVAASLAAQLPRPDLSAREVQVLGLIVRGLANKQIAFTLSI 171 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + HTV ++ + KL +R QA AI+ G I Sbjct: 172 AEHTVKNHVKNILSKLGVQDRTQAATAAIQRGII 205 >gi|301155137|emb|CBW14601.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Haemophilus parainfluenzae T3T1] Length = 219 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I + +V++E Q Sbjct: 82 LRAEGVDARILILTVSDAKNDIFTLIDSGADGYLLKDTEPDVLLEQIKRIAQGEVILSDS 141 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L K +LT+RE L+L G ++++IA +L +S TV ++ + KL Sbjct: 142 IKNLLLERKHTVDPMDSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 201 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 202 NVHSRVAATVL 212 >gi|302535180|ref|ZP_07287522.1| two component system response regulator [Streptomyces sp. C] gi|302444075|gb|EFL15891.1| two component system response regulator [Streptomyces sp. C] Length = 225 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ + + T E K LT+RE + L G ++ Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPMLPTTAAEPENKE---IERLTDREREVMLLVAQGLSNG 175 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L LS TV ++G KL +R+Q + A G + Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|239932265|ref|ZP_04689218.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440629|ref|ZP_06580019.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343524|gb|EFE70480.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|254410427|ref|ZP_05024206.1| transcriptional regulator, LuxR family protein [Microcoleus chthonoplastes PCC 7420] gi|196182633|gb|EDX77618.1| transcriptional regulator, LuxR family protein [Microcoleus chthonoplastes PCC 7420] Length = 244 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 71/226 (31%), Gaps = 14/226 (6%) Query: 11 SSSLQELSPRLH---LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + E RL + +A+ + L +N Q D + Sbjct: 19 ADARDEQELRLQIMDELGEHFQAQYWGLCLLNEDSHAAEVQM----QGGADTEGFVADYN 74 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D L + P + + + +L + P+ G Sbjct: 75 KLARKVDPVLRYVIEHHAPAH-EQLVFSPEVWKQSELYQNCYARYDHEHVMMGPIVSGGR 133 Query: 128 KNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSC 181 G V F A + + + G C + + L + S A LT RE Sbjct: 134 LMGGVYFARASDAPAFDYKDLADLTGLCLHLSSRLATLRSQAKKSQSLVANRLTPREREI 193 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L G T+ EI +L ++ ++V L KL+ R + +A+ Sbjct: 194 ADLVAKGLTNAEIGAELWITQNSVKQALKRMFRKLNVSARAELVAR 239 >gi|254443406|ref|ZP_05056882.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257714|gb|EDY82022.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L ++ S + LTERE L+ G +++EIA L LS TV ++L S KL +R Sbjct: 151 RLEER--SKRQQLTERERDVLEYLIKGRSNKEIASSLYLSEETVKSHLKSLFAKLKVRDR 208 Query: 222 IQAIAKAIRFGYI 234 +A +AIR G + Sbjct: 209 TEAAIEAIRHGIV 221 >gi|125718640|ref|YP_001035773.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323350296|ref|ZP_08085961.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498557|gb|ABN45223.1| Two-component response transcriptional regulator (CheY-like receiver and HTH DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322123481|gb|EFX95152.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991776|gb|EGC23708.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|325697714|gb|EGD39599.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327467206|gb|EGF12710.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 210 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|156744138|ref|YP_001434267.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii DSM 13941] gi|156235466|gb|ABU60249.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 309 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 10/143 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 +++ S+ + + AG V L + + ++ A G Sbjct: 176 LEQAAGNSSNAIRMLARALEIG-RAGGYVRVFLDEGEEMRTLLAQLRRDDFAASLLAAFG 234 Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + +S+ LTERE L+L +G ++ EIAEKL LSV TV ++ Sbjct: 235 KPAHI---------DQSALIEPLTEREMDVLKLVAEGLSNPEIAEKLYLSVGTVKTHVKH 285 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+ A KA G I Sbjct: 286 IYGKLGVDDRVTAAGKARELGLI 308 >gi|225025240|ref|ZP_03714432.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC 23834] gi|224941998|gb|EEG23207.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC 23834] Length = 215 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 43/94 (45%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + ++ + + S+ +LT+RE L+ G +++ IA ++ Sbjct: 117 EAIRQAVAGQQTVSPEMNNAGQSIPPEHSAILDSLTQRERDVLRYVAGGISNKMIARRMF 176 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS +TV A++ + KL+ NR++A A G Sbjct: 177 LSENTVKAHMQNIFRKLNIDNRVRAAVYARELGL 210 >gi|167897499|ref|ZP_02484901.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] Length = 281 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + + D L D + + Sbjct: 63 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 120 Query: 84 LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W Q + G +R+ +G+ + + + + FT+ Sbjct: 121 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 180 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 181 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 239 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 240 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 281 >gi|23098617|ref|NP_692083.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776844|dbj|BAC13118.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 209 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERE L G+G T++EI EKL + V TV ++ + KLD +R QA R Sbjct: 145 HDDLTEREREVLLCIGEGLTNQEIGEKLYIGVKTVKTHVSNILSKLDVHDRTQAAVYVHR 204 Query: 231 FGYI 234 + Sbjct: 205 NKLL 208 >gi|329940013|ref|ZP_08289295.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329300839|gb|EGG44735.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 43/121 (35%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + + + + + + + A Sbjct: 101 LRAGARGYLTKDAGGEEILRAVRSVVSGQAGLAPSVQRRLLERLDRPGTVVTSPEEAPDG 160 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L +G +++EIA +L +S TV ++ + K +R QA+ A R G Sbjct: 161 LTVREVEVLVLIAEGLSNQEIARRLHVSTATVKTHINNMFAKTGLKDRAQAVRYAFRKGL 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|317129617|ref|YP_004095899.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474565|gb|ADU31168.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RE L L G G T+++IAE L + + TV ++ KL+ +R QA Sbjct: 139 RSKPKHEELTNREREVLALIGQGKTNKDIAETLHIGIKTVKTHVSHILSKLEVEDRTQAA 198 Query: 226 AKAIRFGY 233 A + Sbjct: 199 IYANKNKL 206 >gi|228993223|ref|ZP_04153144.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442] gi|229006827|ref|ZP_04164460.1| Spore germination protein gerE [Bacillus mycoides Rock1-4] gi|229087050|ref|ZP_04219202.1| Spore germination protein gerE [Bacillus cereus Rock3-44] gi|228696243|gb|EEL49076.1| Spore germination protein gerE [Bacillus cereus Rock3-44] gi|228754449|gb|EEM03861.1| Spore germination protein gerE [Bacillus mycoides Rock1-4] gi|228766549|gb|EEM15191.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442] Length = 74 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|282862196|ref|ZP_06271259.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563221|gb|EFB68760.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 233 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 33/231 (14%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + R+ LD G Sbjct: 22 VDDHPMWRDAVARDLSESGFDVVATAGDGPGAVRRARAAVPDVLVLDLN--------LPG 73 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ S L V + A + V+ G Sbjct: 74 MPGVQVCKE--------------LVGSHPALRVLVLSASGEHADVLEAVKSGATGYLLKS 119 Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA------RNLTERETSCL 182 +++ L A G V+ ++ L + AA LTERET L Sbjct: 120 ASTQELTDAVRATAAGDPVFTPGLAGLVLGEYRRLASDPAPAASDEPKAPQLTERETEVL 179 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 180 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIETGL 230 >gi|290958411|ref|YP_003489593.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260647937|emb|CBG71042.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R LTERE + L G ++ EIA +L LS TV ++G KL +R+Q Sbjct: 147 SEPRHKELERLTEREREVMILVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQ 206 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 207 VVVLAYETGLV 217 >gi|307151762|ref|YP_003887146.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981990|gb|ADN13871.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 210 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 44/83 (53%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V+ + +++ NL+ERE L+L +G ++ EIAE+L LS +T+ ++ Sbjct: 128 IARLVLGNLKAPAPQQNLKISNLSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRG 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 188 IMNKLAVDDRVQAAVVALRSGLV 210 >gi|297579900|ref|ZP_06941827.1| predicted protein [Vibrio cholerae RC385] gi|297535546|gb|EFH74380.1| predicted protein [Vibrio cholerae RC385] Length = 224 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 47/160 (29%), Gaps = 11/160 (6%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D F+ I+ L L G I H Sbjct: 73 DPFVAAVLQSGRGIMAFMDPYNHPDYGKRLL---LAGQHGEKKAIFLTSFGNRH------ 123 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + ++ H LT+RE L G ++ E Sbjct: 124 --PSSDEIDTLYLLTPHLYSASDAIAHQSQQLHLPPPLNPLTDRECELLPWLKLGKSNWE 181 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 I+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 182 ISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|254444586|ref|ZP_05058062.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198258894|gb|EDY83202.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE LQ+ +G++++EIA+KLGLSV TV+ + + KLD N A++ Sbjct: 132 DTLTEREREVLQMIAEGHSTKEIAKKLGLSVKTVDNHRTNMMRKLDLHNVASITRYAMQN 191 Query: 232 GYI 234 G I Sbjct: 192 GLI 194 >gi|330821614|ref|YP_004350476.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373609|gb|AEA64964.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 509 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 11/134 (8%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLEL 163 + + + ++ S+ E+++ +A +I + Sbjct: 358 RDCLISADSVSIHDQDCILFALLDISDRKRSETEMVLAIETAMQDASWFSRMLIEKLANV 417 Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + S A LT RE L G +EIA KL LS +TV ++ + KLD Sbjct: 418 RRTNSPDAGAQLSDLTGREREVFDLLCRGLADKEIAIKLNLSPNTVRNHVATIYGKLDVH 477 Query: 220 NRIQAIAKAIRFGY 233 +R +AI A G+ Sbjct: 478 SRTEAIVWARERGF 491 >gi|298491629|ref|YP_003721806.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233547|gb|ADI64683.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 238 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE LQL +GY++ IA++L +++ TV ++ + KL A +R QA +A+R G Sbjct: 176 SLTERELEVLQLIVEGYSNAVIAQRLFITIGTVKTHVRNILNKLCADDRTQAAVRALRSG 235 Query: 233 YI 234 + Sbjct: 236 IV 237 >gi|291438083|ref|ZP_06577473.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340978|gb|EFE67934.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 235 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 166 ERLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 225 Query: 232 GYI 234 G + Sbjct: 226 GLV 228 >gi|295680777|ref|YP_003609351.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440672|gb|ADG19840.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 222 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + I S + A ++ + K + LT RE L Sbjct: 110 LPRNAMPAEIVASIEAVAAGLCVLTPDILARLLAETRPSRQKAPAEPFEALTLREIEVLA 169 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG ++EIA +L +S +TV +L S KL A NR +A+ +R G+I Sbjct: 170 MLADGLGNKEIARQLDISDNTVKFHLSSIFGKLGATNRTEAVMLGMRHGFI 220 >gi|256827097|ref|YP_003151056.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583240|gb|ACU94374.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 215 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L GYT++E A+KL +SV TV + KL +R + + A+ Sbjct: 149 PYHELSSREFEIFSLLAQGYTNKEAADKLFISVKTVETHRSKIYAKLGVNSRAELVHLAL 208 Query: 230 RFGYI 234 ++ + Sbjct: 209 KYHLL 213 >gi|25027912|ref|NP_737966.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259506306|ref|ZP_05749208.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23493195|dbj|BAC18166.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259166086|gb|EEW50640.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 221 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L G GYT+ EIA+ L LS TV + G +KL +R+QA+ +A Sbjct: 155 PELDRLTEREREVFVLVGRGYTNPEIAQALHLSESTVKTHFGRVLMKLGLTSRVQAVIRA 214 Query: 229 IRFGYI 234 G + Sbjct: 215 YELGLV 220 >gi|269836276|ref|YP_003318504.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785539|gb|ACZ37682.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 223 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAE 196 LA + +++ +F L ++ L+ RE L+L +++EIA Sbjct: 118 RGLARGEAAISRRMAARILEEFARLERQAEILEPDGGLSPREVEVLELVALRLSNKEIAA 177 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S HTV +L + KL +R QA A A+ G I Sbjct: 178 RLSISEHTVKNHLKNILAKLQLSSRRQAAAYAVAHGLI 215 >gi|18413618|dbj|BAB84309.1| putative nitrate/nitrite response regulator [Halomonas halodenitrificans] Length = 221 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 19/144 (13%) Query: 109 EGGLLPFAG--IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGAC--------- 153 FAG + F V + + + + ++ Sbjct: 76 RLRSGGFAGRVVMFTVSDHEEDVVNALQSGADGYLLKDMDPDEMVRQLRQASLGRMVISE 135 Query: 154 --YQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ + L + + +A +LT+RE L+ G +++ IA KL ++ TV ++ Sbjct: 136 SLTALLAEALRSHRNQPAAPDIHSLTQREREILRELAAGLSNKMIARKLEITEGTVKVHV 195 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL+ +R++A A++ G Sbjct: 196 KHLLKKLNLRSRVEAAVWAVQEGI 219 >gi|297198515|ref|ZP_06915912.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197716175|gb|EDY60209.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|295402188|ref|ZP_06812146.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294975779|gb|EFG51399.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 211 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE +L G+G T++EIA +L LS+ TV ++ KL +R Q AI+ Sbjct: 149 PLSPRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKH 207 >gi|291302327|ref|YP_003513605.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571547|gb|ADD44512.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 222 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQL 184 + +V ++ + + A D E K+R + + L+ RE+ L+L Sbjct: 105 AGASAFVPKSAPSDDVVSAARHAATTPNAFTAADLAEAMKRRLTPSGPQLSPRESQVLKL 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG + IA++L +S T ++ KL A NR QA+ A++ G + Sbjct: 165 LADGMSVAGIAKQLYVSESTAKTHISKLYEKLGAGNRAQALMTALKLGLL 214 >gi|225180998|ref|ZP_03734445.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168195|gb|EEG76999.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 219 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K +S L++RE L L G+G T++EI +L LS TV ++ KL NR QA Sbjct: 142 EKAASQISGLSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNHVSRILDKLGVSNRSQA 201 Query: 225 IAKAIRFGYI 234 A R I Sbjct: 202 AAFMARRSVI 211 >gi|70726115|ref|YP_253029.1| hypothetical protein SH1114 [Staphylococcus haemolyticus JCSC1435] gi|68446839|dbj|BAE04423.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 207 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L G T++EIA L +S T+ ++ KL +R QA AI Sbjct: 146 KLSKREIEVLAEMVKGKTNKEIANTLFVSEKTIKTHVSHIFNKLSVTDRTQAAIYAIENK 205 Query: 233 YI 234 + Sbjct: 206 LV 207 >gi|290961118|ref|YP_003492300.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260650644|emb|CBG73760.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 215 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 151 GACYQVITDFLELFKKRSSA-------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G V+ ++ L + + A A LT+RET L+L G + ++IAE+L +S Sbjct: 123 GLAGLVLGEYRRLASEPAPAPGADEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHR 182 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 183 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 212 >gi|158339385|ref|YP_001520562.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309626|gb|ABW31243.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 208 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL G +++EIA L +S TV ++ + KL +R QA+ A++ G Sbjct: 145 LTERELEVLQLLSKGNSNQEIAAALTISEGTVKFHINNILSKLGVKDRTQAVIMALKKGL 204 >gi|148994461|ref|ZP_01823662.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|168488084|ref|ZP_02712283.1| response regulator [Streptococcus pneumoniae SP195] gi|168490693|ref|ZP_02714836.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|168494570|ref|ZP_02718713.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|225860419|ref|YP_002741928.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|147927210|gb|EDK78245.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|183572895|gb|EDT93423.1| response regulator [Streptococcus pneumoniae SP195] gi|183575039|gb|EDT95567.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|183575541|gb|EDT96069.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|225726539|gb|ACO22390.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|332075238|gb|EGI85708.1| response regulator [Streptococcus pneumoniae GA17570] Length = 210 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|119491420|ref|ZP_01623439.1| NarL subfamily protein [Lyngbya sp. PCC 8106] gi|119453415|gb|EAW34578.1| NarL subfamily protein [Lyngbya sp. PCC 8106] Length = 209 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+ G ++ +IA L + TV +++ KLD +R QA+ A++ Sbjct: 145 PELSERELEVLRSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKR 204 Query: 232 GYIC 235 G +C Sbjct: 205 GIVC 208 >gi|312867898|ref|ZP_07728103.1| putative oxygen regulatory protein NreC [Streptococcus parasanguinis F0405] gi|311096653|gb|EFQ54892.1| putative oxygen regulatory protein NreC [Streptococcus parasanguinis F0405] Length = 210 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 142 HDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFR 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|312111451|ref|YP_003989767.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311216552|gb|ADP75156.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 211 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE +L G+G T++EIA +L LS+ TV ++ KL +R Q AI+ Sbjct: 149 PLSPRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKH 207 >gi|227834277|ref|YP_002835984.1| two-component response regulator ChrA [Corynebacterium aurimucosum ATCC 700975] gi|262183011|ref|ZP_06042432.1| two-component response regulator ChrA [Corynebacterium aurimucosum ATCC 700975] gi|227455293|gb|ACP34046.1| two-component response regulator ChrA [Corynebacterium aurimucosum ATCC 700975] Length = 206 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V+ A G L ++ + L+ RE LQ Sbjct: 97 AGALGYLLKDAPEDTLHTAVLDTAAGKRTLAPEVTNLLAERLAQPETALSPRELEILQAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++++IA++L +S TV +L KL R A++ A I Sbjct: 157 STGASNKQIAQRLFISEATVKTHLIHVYQKLGVETRTAAVSAARERKLI 205 >gi|15900310|ref|NP_344914.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15902388|ref|NP_357938.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|111657155|ref|ZP_01407935.1| hypothetical protein SpneT_02001620 [Streptococcus pneumoniae TIGR4] gi|116517140|ref|YP_815865.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148988147|ref|ZP_01819610.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148996798|ref|ZP_01824516.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006139|ref|ZP_01829868.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012131|ref|ZP_01833240.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|168485529|ref|ZP_02710037.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|168576782|ref|ZP_02722640.1| response regulator [Streptococcus pneumoniae MLV-016] gi|182683352|ref|YP_001835099.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|221231258|ref|YP_002510410.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225856124|ref|YP_002737635.1| response regulator [Streptococcus pneumoniae P1031] gi|225858242|ref|YP_002739752.1| response regulator [Streptococcus pneumoniae 70585] gi|298231095|ref|ZP_06964776.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254642|ref|ZP_06978228.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502187|ref|YP_003724127.1| LuxR family response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303255739|ref|ZP_07341782.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303259462|ref|ZP_07345439.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303262993|ref|ZP_07348927.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303267350|ref|ZP_07353209.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269845|ref|ZP_07355590.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307067043|ref|YP_003876009.1| CheY-like receiver/HTH DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126599|ref|YP_003878630.1| response regulator [Streptococcus pneumoniae 670-6B] gi|5830527|emb|CAB54571.1| response regulator [Streptococcus pneumoniae] gi|14971857|gb|AAK74554.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15457902|gb|AAK99148.1| Response regulator [Streptococcus pneumoniae R6] gi|116077716|gb|ABJ55436.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147757373|gb|EDK64412.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147762495|gb|EDK69456.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763733|gb|EDK70667.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147926611|gb|EDK77684.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182628686|gb|ACB89634.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|183571158|gb|EDT91686.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|183577579|gb|EDT98107.1| response regulator [Streptococcus pneumoniae MLV-016] gi|220673718|emb|CAR68214.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225722011|gb|ACO17865.1| response regulator [Streptococcus pneumoniae 70585] gi|225724954|gb|ACO20806.1| response regulator [Streptococcus pneumoniae P1031] gi|298237782|gb|ADI68913.1| LuxR family response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793635|emb|CBW36018.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301801302|emb|CBW33982.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302597299|gb|EFL64402.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302635884|gb|EFL66385.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639396|gb|EFL69854.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640613|gb|EFL71015.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643121|gb|EFL73409.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|306408580|gb|ADM84007.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483661|gb|ADM90530.1| response regulator [Streptococcus pneumoniae 670-6B] gi|332076827|gb|EGI87289.1| response regulator [Streptococcus pneumoniae GA17545] gi|332077675|gb|EGI88136.1| response regulator [Streptococcus pneumoniae GA41301] Length = 210 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|302550470|ref|ZP_07302812.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468088|gb|EFL31181.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178 +R G Y + L A + H +V L + S AR +LT+RE Sbjct: 97 LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVADALLSQEEANSGPARAGSLTDRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 210 >gi|239932122|ref|ZP_04689075.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440492|ref|ZP_06579882.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343387|gb|EFE70343.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERE 178 +R G Y + L A + H + L ++ + A +LTERE Sbjct: 97 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQAEVAGALLSQEESAPGQGRAGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211 >gi|311070407|ref|YP_003975330.1| two-component response regulator YxjM [Bacillus atrophaeus 1942] gi|310870924|gb|ADP34399.1| two-component response regulator (YxjM) [Bacillus atrophaeus 1942] Length = 218 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAE 196 + I ++I++ ++ A T+RE LQ G +EEIA+ Sbjct: 120 RAASRGEAIFRTVTAAKIISETFRAKQQPYTEKLAEPFTKRELEVLQQMAYGLRNEEIAD 179 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KL +S TV ++ K +A +R QA+ AIR G + Sbjct: 180 KLFVSESTVKTHVHRILQKCEAQDRTQAVVFAIRNGIV 217 >gi|165975516|ref|YP_001651109.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250537|ref|ZP_07336734.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251881|ref|ZP_07338052.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244860|ref|ZP_07526959.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247035|ref|ZP_07529089.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249257|ref|ZP_07531254.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251580|ref|ZP_07533487.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253814|ref|ZP_07535668.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256079|ref|ZP_07537867.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258270|ref|ZP_07540013.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260511|ref|ZP_07542205.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|165875617|gb|ABY68665.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649311|gb|EFL79496.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650525|gb|EFL80684.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854305|gb|EFM86511.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856487|gb|EFM88636.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858781|gb|EFM90840.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861044|gb|EFM93050.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863298|gb|EFM95238.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865501|gb|EFM97396.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867730|gb|EFM99575.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869823|gb|EFN01606.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 209 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 11/134 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ---VI 157 L + I V ++ ++E Q V+ Sbjct: 69 LRALRKHGIDSRIIVLTVSDEQSDIFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVL 128 Query: 158 TDFL--ELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ + L ++R LT+RE LQ G ++++IA +L +S TV ++ + Sbjct: 129 SESVKQHLLERRPENDPLSVLTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLL 188 Query: 214 VKLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 189 RKLNVHSRVAATVL 202 >gi|158333709|ref|YP_001514881.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303950|gb|ABW25567.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 209 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RET L L +G ++ EIAE L +S TV ++ S +L+ +R QA Sbjct: 142 EPPELAELTPRETEVLALIAEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAI 201 Query: 227 KA 228 A Sbjct: 202 LA 203 >gi|113954826|ref|YP_730328.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113882177|gb|ABI47135.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 234 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE ++ G + EIA+ L +S TV +++ + KL +R QA A+ Sbjct: 168 DPLSERELDVIRCIIRGMRNIEIADALFISSETVKSHVSTVIQKLGVRDRTQAAVFAMTH 227 Query: 232 GYI 234 G I Sbjct: 228 GLI 230 >gi|311896797|dbj|BAJ29205.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 229 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G ++ EIA +L LS TV ++G KL +R+QA+ A G Sbjct: 162 PLTDREREVFLLVSQGLSNGEIAARLVLSEATVKTHVGRILAKLGLRDRVQAVVLAYENG 221 Query: 233 YI 234 + Sbjct: 222 LV 223 >gi|270293338|ref|ZP_06199547.1| DNA-binding response regulator VraR [Streptococcus sp. M143] gi|270278187|gb|EFA24035.1| DNA-binding response regulator VraR [Streptococcus sp. M143] Length = 210 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 50/113 (44%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + G +++ L+ A + A Q ++ +E + LT RE Sbjct: 93 LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTARERDV 152 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 153 LQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|227489040|ref|ZP_03919356.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227090985|gb|EEI26297.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 212 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + LT RE L+L G +++EI L LS TV ++L KLDA +R Sbjct: 140 RLMTRVRGPKTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSR 199 Query: 222 IQAIAKAIRFGYI 234 A+A A G + Sbjct: 200 TAAVAAAREQGVL 212 >gi|149018085|ref|ZP_01834544.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168482621|ref|ZP_02707573.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|147931649|gb|EDK82627.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|172043787|gb|EDT51833.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|332203553|gb|EGJ17620.1| response regulator [Streptococcus pneumoniae GA47368] Length = 210 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + LT R Sbjct: 90 LPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|257057262|ref|YP_003135094.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587134|gb|ACU98267.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 223 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 39/84 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V + LTERE L L +GY+++EIA++L +S TV ++ Sbjct: 136 FLDPAVARRLTRQMVSPPTGVGALTERERDVLILIANGYSNKEIADELVISERTVRTHVS 195 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL +R QA A+R G + Sbjct: 196 SILRKLRLSSRTQAALVAVREGLV 219 >gi|327462458|gb|EGF08783.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|332362992|gb|EGJ40781.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332364570|gb|EGJ42339.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] gi|332366354|gb|EGJ44105.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 210 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|311280537|ref|YP_003942768.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308749732|gb|ADO49484.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 226 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 68/214 (31%), Gaps = 10/214 (4%) Query: 15 QELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + R L I I + Y +N LHN ++ Sbjct: 11 DAIIARCLQTISQLIPLSSAVFYRVNKR-----TTPENYILHNISENTHQQYLEH-FQPL 64 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D L + P I + + + +R + Sbjct: 65 DPLLP--SRFTHPSITMAGMTPGLYDRYRHYYHDFMLPNNVRDMTEIFIRRDRRIVAGIS 122 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 ++E + A V EL + + + LT +E + + +G +++ Sbjct: 123 LMR-DTPFSSEERLRAQAVLPLVELAIHELLQDDDALSEMLTAKEREIVSMVREGASNKL 181 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 IA +L +S+ TV +L + K + VNR + +++ Sbjct: 182 IARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215 >gi|190149328|ref|YP_001967853.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262641|ref|ZP_07544271.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914459|gb|ACE60711.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872064|gb|EFN03778.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 209 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 11/134 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ---VI 157 L + + V ++ ++E Q V+ Sbjct: 69 LRALRKHGIDSRIVVLTVSDEQSDVFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVL 128 Query: 158 TDFL--ELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ + L ++R LT+RE LQ G ++++IA +L +S TV ++ + Sbjct: 129 SESVKQHLLERRPENDPLSVLTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLL 188 Query: 214 VKLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 189 RKLNVHSRVAATVL 202 >gi|163735991|ref|ZP_02143417.1| hypothetical protein RLO149_07254 [Roseobacter litoralis Och 149] gi|161390716|gb|EDQ15059.1| hypothetical protein RLO149_07254 [Roseobacter litoralis Och 149] Length = 320 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 11/229 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ ++ ELS + I + +NFA++ + IC N Sbjct: 57 EADNVTELSNSMWKITTTLAFQNFAIFVLKQGPGMAF-NPKICTSCN--AKWVARYVDQG 113 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 Y D + + ++ + + + G+ F + Sbjct: 114 YQYVDPVMTKASENDGCFLYSDLP--VGSPVVETFWQDADHHRIGRNGVCFCIARRDGSK 171 Query: 130 GYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 V F+++ + I + + F + LTE E L + Sbjct: 172 IGVSFSTQDTANKVQEIFYANSYDMNFIAQIAADVFCYAATDTLLSDDTLTEAELRFLYV 231 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + A K+ S + + S KL QA+A+A G+ Sbjct: 232 LST-SPNPQDAIKVTSSFGSNTSLQASIRAKLGVETVYQAVARAAARGW 279 >gi|87123599|ref|ZP_01079450.1| possible transcriptional regulator [Synechococcus sp. RS9917] gi|86169319|gb|EAQ70575.1| possible transcriptional regulator [Synechococcus sp. RS9917] Length = 92 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 40/70 (57%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S + +L+ RE ++L +G T++EIAE+L +S TV+ ++ + K A NR+ + Sbjct: 6 DSGSPSIDLSTREIEIVELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGAKNRVALL 65 Query: 226 AKAIRFGYIC 235 A+ G IC Sbjct: 66 NWAMDHGKIC 75 >gi|295695123|ref|YP_003588361.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410725|gb|ADG05217.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 216 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 149 AHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A +++T + ++ A+ LT RE L L G ++ EIA+ L +S +TV Sbjct: 127 AEEVAARLVTTLAAPAQGSAAEVAKRLTPREREILGLIARGRSNREIAQALTISENTVKN 186 Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230 +L + KLD NR Q A A+R Sbjct: 187 HLKNIMAKLDVKNRAQLAALAVR 209 >gi|242279313|ref|YP_002991442.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122207|gb|ACS79903.1| two component transcriptional regulator, LuxR family [Desulfovibrio salexigens DSM 2638] Length = 217 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+++ + + + LT RE L+L G +++ IAE++ +S TV ++ Sbjct: 132 IARKVLSELSQPGEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVSEATVRTHMT 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 S KL NR++A A+R G Sbjct: 192 SILSKLHLANRVEATLYALREGI 214 >gi|269929142|ref|YP_003321463.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788499|gb|ACZ40641.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 212 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RE L L G ++EIA +L ++ TV + + KLD R +A+ Sbjct: 142 RGEPVEEELTARELDVLTLMARGLRNKEIAYELSITERTVKFHANAIYRKLDVSGRTEAV 201 Query: 226 AKAIRFGYI 234 +KAI+ G + Sbjct: 202 SKAIQRGLV 210 >gi|159898087|ref|YP_001544334.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891126|gb|ABX04206.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 257 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAE 196 +V+ E +++T F L + L++RE L+ G T+++IA+ Sbjct: 130 DVMFEDPRVADRILTQFRGLQTGIVAEPDLDISLFSPLSDREIEVLEHIASGATNKDIAD 189 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S TV ++ S KL +R QA+ A+R G+I Sbjct: 190 ALKISTQTVKNHISSILRKLSLNDRTQAVLYALRRGWI 227 >gi|328945025|gb|EGG39181.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 210 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|30022580|ref|NP_834211.1| germination protein gerE [Bacillus cereus ATCC 14579] gi|30264558|ref|NP_846935.1| germination protein GerE [Bacillus anthracis str. Ames] gi|47530023|ref|YP_021372.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor'] gi|49187380|ref|YP_030632.1| germination protein GerE [Bacillus anthracis str. Sterne] gi|49481503|ref|YP_038542.1| germination protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141012|ref|YP_085817.1| germination protein [Bacillus cereus E33L] gi|65321856|ref|ZP_00394815.1| COG2771: DNA-binding HTH domain-containing proteins [Bacillus anthracis str. A2012] gi|75760738|ref|ZP_00740760.1| Germination protein gerE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118479654|ref|YP_896805.1| germination protein [Bacillus thuringiensis str. Al Hakam] gi|163942232|ref|YP_001647116.1| LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165871523|ref|ZP_02216170.1| germination protein GerE [Bacillus anthracis str. A0488] gi|167635626|ref|ZP_02393938.1| germination protein GerE [Bacillus anthracis str. A0442] gi|167641680|ref|ZP_02399925.1| germination protein GerE [Bacillus anthracis str. A0193] gi|170708363|ref|ZP_02898807.1| germination protein GerE [Bacillus anthracis str. A0389] gi|177653107|ref|ZP_02935394.1| germination protein GerE [Bacillus anthracis str. A0174] gi|190566971|ref|ZP_03019887.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I] gi|196034356|ref|ZP_03101765.1| germination protein GerE [Bacillus cereus W] gi|196039336|ref|ZP_03106642.1| germination protein GerE [Bacillus cereus NVH0597-99] gi|196044720|ref|ZP_03111954.1| germination protein GerE [Bacillus cereus 03BB108] gi|206969521|ref|ZP_03230475.1| germination protein GerE [Bacillus cereus AH1134] gi|206976107|ref|ZP_03237017.1| germination protein GerE [Bacillus cereus H3081.97] gi|217961984|ref|YP_002340554.1| germination protein GerE [Bacillus cereus AH187] gi|218231866|ref|YP_002369296.1| germination protein GerE [Bacillus cereus B4264] gi|218899656|ref|YP_002448067.1| germination protein GerE [Bacillus cereus G9842] gi|225866473|ref|YP_002751851.1| germination protein GerE [Bacillus cereus 03BB102] gi|227817270|ref|YP_002817279.1| germination protein GerE [Bacillus anthracis str. CDC 684] gi|228903018|ref|ZP_04067157.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222] gi|228910323|ref|ZP_04074139.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200] gi|228917128|ref|ZP_04080686.1| Spore germination protein gerE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923243|ref|ZP_04086533.1| Spore germination protein gerE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929537|ref|ZP_04092556.1| Spore germination protein gerE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935809|ref|ZP_04098621.1| Spore germination protein gerE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228941677|ref|ZP_04104224.1| Spore germination protein gerE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948213|ref|ZP_04110497.1| Spore germination protein gerE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228954769|ref|ZP_04116790.1| Spore germination protein gerE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960765|ref|ZP_04122403.1| Spore germination protein gerE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967593|ref|ZP_04128616.1| Spore germination protein gerE [Bacillus thuringiensis serovar sotto str. T04001] gi|228974604|ref|ZP_04135170.1| Spore germination protein gerE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981199|ref|ZP_04141499.1| Spore germination protein gerE [Bacillus thuringiensis Bt407] gi|228987740|ref|ZP_04147851.1| Spore germination protein gerE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229013700|ref|ZP_04170829.1| Spore germination protein gerE [Bacillus mycoides DSM 2048] gi|229032144|ref|ZP_04188120.1| Spore germination protein gerE [Bacillus cereus AH1271] gi|229048205|ref|ZP_04193774.1| Spore germination protein gerE [Bacillus cereus AH676] gi|229062182|ref|ZP_04199506.1| Spore germination protein gerE [Bacillus cereus AH603] gi|229072004|ref|ZP_04205214.1| Spore germination protein gerE [Bacillus cereus F65185] gi|229081752|ref|ZP_04214245.1| Spore germination protein gerE [Bacillus cereus Rock4-2] gi|229093586|ref|ZP_04224687.1| Spore germination protein gerE [Bacillus cereus Rock3-42] gi|229098957|ref|ZP_04229892.1| Spore germination protein gerE [Bacillus cereus Rock3-29] gi|229105124|ref|ZP_04235775.1| Spore germination protein gerE [Bacillus cereus Rock3-28] gi|229111961|ref|ZP_04241505.1| Spore germination protein gerE [Bacillus cereus Rock1-15] gi|229117986|ref|ZP_04247346.1| Spore germination protein gerE [Bacillus cereus Rock1-3] gi|229129784|ref|ZP_04258751.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4] gi|229135330|ref|ZP_04264123.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196] gi|229141231|ref|ZP_04269770.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26] gi|229147058|ref|ZP_04275418.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24] gi|229152693|ref|ZP_04280880.1| Spore germination protein gerE [Bacillus cereus m1550] gi|229158108|ref|ZP_04286177.1| Spore germination protein gerE [Bacillus cereus ATCC 4342] gi|229169225|ref|ZP_04296939.1| Spore germination protein gerE [Bacillus cereus AH621] gi|229180765|ref|ZP_04308103.1| Spore germination protein gerE [Bacillus cereus 172560W] gi|229186733|ref|ZP_04313891.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1] gi|229192698|ref|ZP_04319657.1| Spore germination protein gerE [Bacillus cereus ATCC 10876] gi|229602349|ref|YP_002868773.1| germination protein GerE [Bacillus anthracis str. A0248] gi|254724584|ref|ZP_05186367.1| germination protein GerE [Bacillus anthracis str. A1055] gi|254736592|ref|ZP_05194298.1| germination protein GerE [Bacillus anthracis str. Western North America USA6153] gi|254741630|ref|ZP_05199317.1| germination protein GerE [Bacillus anthracis str. Kruger B] gi|254754772|ref|ZP_05206807.1| germination protein GerE [Bacillus anthracis str. Vollum] gi|254757604|ref|ZP_05209631.1| germination protein GerE [Bacillus anthracis str. Australia 94] gi|296504976|ref|YP_003666676.1| germination protein gerE [Bacillus thuringiensis BMB171] gi|301056000|ref|YP_003794211.1| germination protein [Bacillus anthracis CI] gi|29898138|gb|AAP11412.1| Germination protein gerE [Bacillus cereus ATCC 14579] gi|30259216|gb|AAP28421.1| germination protein GerE [Bacillus anthracis str. Ames] gi|47505171|gb|AAT33847.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor'] gi|49181307|gb|AAT56683.1| germination protein GerE [Bacillus anthracis str. Sterne] gi|49333059|gb|AAT63705.1| germination protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974481|gb|AAU16031.1| germination protein [Bacillus cereus E33L] gi|74491766|gb|EAO54960.1| Germination protein gerE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118418879|gb|ABK87298.1| germination protein [Bacillus thuringiensis str. Al Hakam] gi|163864429|gb|ABY45488.1| transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|164712820|gb|EDR18350.1| germination protein GerE [Bacillus anthracis str. A0488] gi|167510387|gb|EDR85788.1| germination protein GerE [Bacillus anthracis str. A0193] gi|167529046|gb|EDR91801.1| germination protein GerE [Bacillus anthracis str. A0442] gi|170126738|gb|EDS95621.1| germination protein GerE [Bacillus anthracis str. A0389] gi|172081631|gb|EDT66702.1| germination protein GerE [Bacillus anthracis str. A0174] gi|190561962|gb|EDV15931.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I] gi|195992898|gb|EDX56857.1| germination protein GerE [Bacillus cereus W] gi|196024208|gb|EDX62881.1| germination protein GerE [Bacillus cereus 03BB108] gi|196029963|gb|EDX68564.1| germination protein GerE [Bacillus cereus NVH0597-99] gi|206735209|gb|EDZ52377.1| germination protein GerE [Bacillus cereus AH1134] gi|206745859|gb|EDZ57256.1| germination protein GerE [Bacillus cereus H3081.97] gi|217063730|gb|ACJ77980.1| germination protein GerE [Bacillus cereus AH187] gi|218159823|gb|ACK59815.1| germination protein GerE [Bacillus cereus B4264] gi|218543532|gb|ACK95926.1| germination protein GerE [Bacillus cereus G9842] gi|225786008|gb|ACO26225.1| germination protein GerE [Bacillus cereus 03BB102] gi|227004247|gb|ACP13990.1| germination protein GerE [Bacillus anthracis str. CDC 684] gi|228590788|gb|EEK48648.1| Spore germination protein gerE [Bacillus cereus ATCC 10876] gi|228596746|gb|EEK54408.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1] gi|228602743|gb|EEK60226.1| Spore germination protein gerE [Bacillus cereus 172560W] gi|228614291|gb|EEK71402.1| Spore germination protein gerE [Bacillus cereus AH621] gi|228625337|gb|EEK82095.1| Spore germination protein gerE [Bacillus cereus ATCC 4342] gi|228630756|gb|EEK87398.1| Spore germination protein gerE [Bacillus cereus m1550] gi|228636446|gb|EEK92916.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24] gi|228642272|gb|EEK98564.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26] gi|228648128|gb|EEL04170.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196] gi|228653700|gb|EEL09571.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4] gi|228665435|gb|EEL20917.1| Spore germination protein gerE [Bacillus cereus Rock1-3] gi|228671525|gb|EEL26825.1| Spore germination protein gerE [Bacillus cereus Rock1-15] gi|228678305|gb|EEL32531.1| Spore germination protein gerE [Bacillus cereus Rock3-28] gi|228684455|gb|EEL38398.1| Spore germination protein gerE [Bacillus cereus Rock3-29] gi|228689795|gb|EEL43601.1| Spore germination protein gerE [Bacillus cereus Rock3-42] gi|228701597|gb|EEL54090.1| Spore germination protein gerE [Bacillus cereus Rock4-2] gi|228711163|gb|EEL63128.1| Spore germination protein gerE [Bacillus cereus F65185] gi|228717165|gb|EEL68841.1| Spore germination protein gerE [Bacillus cereus AH603] gi|228723192|gb|EEL74568.1| Spore germination protein gerE [Bacillus cereus AH676] gi|228729150|gb|EEL80150.1| Spore germination protein gerE [Bacillus cereus AH1271] gi|228747622|gb|EEL97496.1| Spore germination protein gerE [Bacillus mycoides DSM 2048] gi|228772014|gb|EEM20469.1| Spore germination protein gerE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778399|gb|EEM26666.1| Spore germination protein gerE [Bacillus thuringiensis Bt407] gi|228785007|gb|EEM33020.1| Spore germination protein gerE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792084|gb|EEM39663.1| Spore germination protein gerE [Bacillus thuringiensis serovar sotto str. T04001] gi|228798900|gb|EEM45876.1| Spore germination protein gerE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804889|gb|EEM51487.1| Spore germination protein gerE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228811571|gb|EEM57908.1| Spore germination protein gerE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817889|gb|EEM63967.1| Spore germination protein gerE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823866|gb|EEM69686.1| Spore germination protein gerE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830116|gb|EEM75734.1| Spore germination protein gerE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836449|gb|EEM81800.1| Spore germination protein gerE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842546|gb|EEM87636.1| Spore germination protein gerE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849275|gb|EEM94113.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200] gi|228856611|gb|EEN01132.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222] gi|229266757|gb|ACQ48394.1| germination protein GerE [Bacillus anthracis str. A0248] gi|296326028|gb|ADH08956.1| germination protein gerE [Bacillus thuringiensis BMB171] gi|300378169|gb|ADK07073.1| germination protein [Bacillus cereus biovar anthracis str. CI] gi|324328393|gb|ADY23653.1| germination protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942284|gb|AEA18180.1| germination protein gerE [Bacillus thuringiensis serovar chinensis CT-43] Length = 74 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|325695228|gb|EGD37129.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 210 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|159898124|ref|YP_001544371.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891163|gb|ABX04243.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 38/66 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A L++RE LQL G +++ IA L +S +T+ +++ KLD +R +A+A A Sbjct: 141 PAEDELSQRELDVLQLLVRGESNKAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVA 200 Query: 229 IRFGYI 234 ++ G + Sbjct: 201 LQRGLV 206 >gi|297195362|ref|ZP_06912760.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719268|gb|EDY63176.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + LT+RE L+L G ++ EIA L +S TV ++G Sbjct: 135 RLLDKYADHLPSGEEPVPDTLHTLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A G + Sbjct: 195 HVLTKLGLRDRVQAAVYAYESGLV 218 >gi|187251602|ref|YP_001876084.1| two component LuxR family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186971762|gb|ACC98747.1| Two-component transcriptional regulator, LuxR family [Elusimicrobium minutum Pei191] Length = 225 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 46/93 (49%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 +E ++ +++ ++ + + LT E + L G G +++E+A +L S Sbjct: 125 TSEGLMIPQQLMGKLLHGLRKMGDNGTPSQALLTRTEIKVISLLGKGLSNKELATELSCS 184 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V T+ +L SA KL +R +A+ KAI G I Sbjct: 185 VKTIKNHLNSAFHKLGVGSRTEAVVKAIEKGLI 217 >gi|46201969|ref|ZP_00054016.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 6/149 (4%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP------VRLGFHKNGYVIFTSEF 138 P I E + L + I + V G F S+ Sbjct: 53 TPFDVGVIGWEMPYLDGRGVLQTLRSRVDAPRLIVYTGSPNPDVPRQAMTLGAAGFCSKR 112 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A +++ F+++ S LT RE L G T++++A +L Sbjct: 113 EPPEQLLDTIIAVAAGRMVFPFIDVSSLASDPLAGLTPRERELLAALAGGLTNQQMAGQL 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S++TV +L + KL NR QA+A Sbjct: 173 DISLNTVKFHLKNLYDKLGVGNRAQAVAF 201 >gi|329939099|ref|ZP_08288473.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329301984|gb|EGG45877.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|301052287|ref|YP_003790498.1| transcriptional regulator [Bacillus anthracis CI] gi|300374456|gb|ADK03360.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|298243753|ref|ZP_06967560.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556807|gb|EFH90671.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 35/75 (46%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 FL + + NLTERE L+L G ++++IA L + TV ++ KL Sbjct: 132 FLLHEVREPNLPENLTEREADVLRLLAQGRSNKDIARHLHIVEDTVKTHVRHILSKLGVQ 191 Query: 220 NRIQAIAKAIRFGYI 234 +R QA A R + Sbjct: 192 SRTQAALYATRLNLV 206 >gi|228907986|ref|ZP_04071836.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851652|gb|EEM96456.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|228918143|ref|ZP_04081650.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841505|gb|EEM86641.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|228950550|ref|ZP_04112691.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809127|gb|EEM55607.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|228985616|ref|ZP_04145769.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774011|gb|EEM22424.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 73 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 9 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 68 Query: 233 YI 234 + Sbjct: 69 LV 70 >gi|229073471|ref|ZP_04206602.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228709645|gb|EEL61688.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 131 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 67 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 126 Query: 233 YI 234 + Sbjct: 127 LV 128 >gi|229079676|ref|ZP_04212209.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228703516|gb|EEL55969.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|229156108|ref|ZP_04284207.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627429|gb|EEK84157.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|206972973|ref|ZP_03233895.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228924979|ref|ZP_04088109.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229182326|ref|ZP_04309600.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229194039|ref|ZP_04320933.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|206731857|gb|EDZ49057.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228589439|gb|EEK47364.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228601135|gb|EEK58682.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228834642|gb|EEM80151.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|196047172|ref|ZP_03114389.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|229182965|ref|ZP_04310198.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|196022042|gb|EDX60732.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|228600589|gb|EEK58176.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|196041819|ref|ZP_03109108.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|229028432|ref|ZP_04184554.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|196027313|gb|EDX65931.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|228732881|gb|EEL83741.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|47568085|ref|ZP_00238790.1| DNA-binding response regulator [Bacillus cereus G9241] gi|229042495|ref|ZP_04190240.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229108243|ref|ZP_04237865.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229194950|ref|ZP_04321731.1| DNA-binding response regulator [Bacillus cereus m1293] gi|47555239|gb|EAL13585.1| DNA-binding response regulator [Bacillus cereus G9241] gi|228588518|gb|EEK46555.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228675259|gb|EEL30481.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228726848|gb|EEL78060.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 213 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|261408873|ref|YP_003245114.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928799|ref|ZP_08282638.1| response regulator protein VraR [Paenibacillus sp. HGF5] gi|261285336|gb|ACX67307.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328937442|gb|EGG33863.1| response regulator protein VraR [Paenibacillus sp. HGF5] Length = 217 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L +G +++EI E+L +S+ TV ++ + +K + +R Q A R G Sbjct: 154 GLTEREKEVLLLIAEGKSNKEIGEELHISIKTVKTHVSNLLMKCELEDRTQLAIYAHRKG 213 Query: 233 YI 234 ++ Sbjct: 214 WV 215 >gi|224824369|ref|ZP_03697477.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224603788|gb|EEG09963.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 222 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 8/89 (8%) Query: 152 ACYQVITDFLELFKKRSSAA--------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + +T L + + A LT RE L G +++EIA L L+ Sbjct: 128 VMSEAMTAKLMAHFRAGAPAPSQQQQELEKLTPREREILGFLAQGQSNKEIARTLDLAES 187 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TV ++ + KL +R+QA A+ G Sbjct: 188 TVKIHVQNILKKLGLSSRVQAAVYAVEHG 216 >gi|32035561|ref|ZP_00135492.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207547|ref|YP_001052772.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae L20] gi|126096339|gb|ABN73167.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 209 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 11/134 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + + V ++ ++E Q Sbjct: 69 LRALRKHGIDSRIVVLTVSDEQSDVFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVL 128 Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + L + + LT+RE LQ G ++++IA +L +S TV ++ + Sbjct: 129 SDSVRQHLLDRRPENDPLSVLTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLL 188 Query: 214 VKLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 189 RKLNVHSRVAATVL 202 >gi|302550833|ref|ZP_07303175.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468451|gb|EFL31544.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 215 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 63/220 (28%), Gaps = 10/220 (4%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + + R+ LD G Sbjct: 3 VDDHPMWRDAVARDLAESGFEVVATAGDGEQAVRRAKAAVPEVLVLDLN--------LPG 54 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + + + + + ++ Sbjct: 55 KPGVQVCKEVVAADPALRVLVLSASGEHADVL--EAVKSGATGYLLKSASTEELRDAVRS 112 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + + G ++ ++ A LT+RET L+L G + ++ Sbjct: 113 TAVGDPVFTPGLAGLVLGEYRRLASEPAPAPDADEPKAPRLTDRETEVLRLVAKGLSYKQ 172 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 173 IAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212 >gi|332204409|gb|EGJ18474.1| response regulator [Streptococcus pneumoniae GA47901] Length = 210 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY+I TS L A + A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMIKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|325067354|ref|ZP_08126027.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] Length = 244 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 5/135 (3%) Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + AG + + R S +++ + + Sbjct: 108 FDLDEYAFAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAASLPS 167 Query: 160 FLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + +LT RE L L G ++ EIA L +S TV ++G+ KLD Sbjct: 168 SDAPEQSSCDPRIESLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDV 227 Query: 219 VNRIQAIAKAIRFGY 233 +R+QA+ A G Sbjct: 228 RDRVQAVVVAYETGL 242 >gi|156740169|ref|YP_001430298.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231497|gb|ABU56280.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 454 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ERE L+L G T+++IA +L +S +TV +L + K+ +R +A A+ Sbjct: 5 TLPQLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAV 64 Query: 230 RFGYI 234 R G + Sbjct: 65 RSGIV 69 >gi|295400540|ref|ZP_06810518.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294977443|gb|EFG53043.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 557 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKR--- 167 I F V H V EV + G ++ K+ Sbjct: 422 FGTVMEIPFSVHEHMHGVMAVHMKHLEAAKEAEVYVTALIGIGTMIMKQNNYHGPKQQLN 481 Query: 168 -SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L L G ++ EIA++L +S+HTV ++ + K+ +R Q IA Sbjct: 482 MDMLSERLTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIA 541 Query: 227 KAIRF 231 + Sbjct: 542 LVYQL 546 >gi|332358064|gb|EGJ35897.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 210 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|213692561|ref|YP_002323147.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524022|gb|ACJ52769.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458713|dbj|BAJ69334.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 289 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 224 PELDLLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 283 Query: 229 IRFGYI 234 G + Sbjct: 284 YDNGLV 289 >gi|72162890|ref|YP_290547.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916622|gb|AAZ56524.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 242 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 6/89 (6%) Query: 152 ACYQVITDFLELF----KKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++I +F L +RS + LTERET L+L G + +IA++L +S +TV Sbjct: 139 MATKLINEFAALARKGKDRRSQPTKPPRLTERETEVLRLVARGLNNRDIADRLYISDNTV 198 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R +A AIR ++ Sbjct: 199 KNHVRNILEKLQLHSRTEAAVYAIREKFL 227 >gi|186682728|ref|YP_001865924.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465180|gb|ACC80981.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 221 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE L+L G ++ EIA++L +S TV ++ + L+ +R QA Sbjct: 150 PSTLNELTPREKEVLRLIATGASNREIAQELYISEGTVKNHVTNILNTLNLRDRTQAAIW 209 Query: 228 A 228 A Sbjct: 210 A 210 >gi|83310354|ref|YP_420618.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945195|dbj|BAE50059.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 209 Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 6/149 (4%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP------VRLGFHKNGYVIFTSEF 138 P I E + L + I + V G F S+ Sbjct: 53 TPFDVGIIGWEMPYLDGRGVLQTLRTRVDAPRLIVYTGSPNPDVPRQAMTLGAAGFCSKR 112 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A +++ F+++ S LT RE L G T++++A +L Sbjct: 113 EPPEQLLDTIIAVAAGRMVFPFIDVSSLASDPLAGLTPRERELLAALAGGLTNQQMAGQL 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S++TV +L + KL NR QA+A Sbjct: 173 DISLNTVKFHLKNLYDKLGVGNRAQAVAF 201 >gi|111023439|ref|YP_706411.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822969|gb|ABG98253.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 216 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---LELFKKRSSAARNLTERETSCLQL 184 ++A+ + A ++I D +++ +A LT RE L+L Sbjct: 104 DAPAEELIRAVRVVADGEALLAPTVTRRLIADVTSRRSTARRKPAALSALTPREREVLEL 163 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE+L ++ TV ++G KLD +R QA+ A G + Sbjct: 164 IARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 213 >gi|318057517|ref|ZP_07976240.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318081139|ref|ZP_07988471.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 226 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 73/232 (31%), Gaps = 34/232 (14%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + ++A F L R+ D + L Sbjct: 13 VDDHPMWRDAVARDLEAAGFELVATAGDGPQAVRRATAT-----RPDVLVLDLNLPGL-- 65 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + +L V + A + V+ G Sbjct: 66 -PGVEVCKRLVR--------------ERPELHVLVLSASGEHADVLEAVKSGATGYLVKS 110 Query: 134 FTSEF--LMLANEVIIEAHG---ACYQVITDFLELFKKRSS-------AARNLTERETSC 181 ++E + + +A V+ ++ L + A LTERET Sbjct: 111 ASTEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPEAPRLTERETEV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 171 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 222 >gi|302205480|gb|ADL09822.1| Response regulator [Corynebacterium pseudotuberculosis C231] gi|308275716|gb|ADO25615.1| Response regulator [Corynebacterium pseudotuberculosis I19] Length = 234 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++ EIA +L +S+ TV ++G K + +R+ A+ A + Sbjct: 164 EPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHAVLFAFKR 223 Query: 232 GYI 234 G + Sbjct: 224 GVV 226 >gi|323488502|ref|ZP_08093746.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397719|gb|EGA90521.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 211 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 160 FLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L + K+ ++ LT RE L + +G ++++IA +L +S TV ++ + K D Sbjct: 133 LLSMHKQENNQEDKTLTPREMEVLLVLVEGLSNKDIATRLYISDKTVKIHVSNIFKKFDV 192 Query: 219 VNRIQAIAKAIRFGYI 234 +R QAI A++ + Sbjct: 193 KSRSQAIIFAVQNNLV 208 >gi|302561540|ref|ZP_07313882.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302479158|gb|EFL42251.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|149003489|ref|ZP_01828363.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|169833867|ref|YP_001693899.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|194398711|ref|YP_002037067.1| response regulator [Streptococcus pneumoniae G54] gi|225853962|ref|YP_002735474.1| response regulator [Streptococcus pneumoniae JJA] gi|237649348|ref|ZP_04523600.1| response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821532|ref|ZP_04597377.1| response regulator [Streptococcus pneumoniae CCRI 1974M2] gi|147758425|gb|EDK65424.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|168996369|gb|ACA36981.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|194358378|gb|ACF56826.1| response regulator TCS03 [Streptococcus pneumoniae G54] gi|225723015|gb|ACO18868.1| response regulator [Streptococcus pneumoniae JJA] Length = 210 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|89098909|ref|ZP_01171789.1| germination protein [Bacillus sp. NRRL B-14911] gi|89086313|gb|EAR65434.1| germination protein [Bacillus sp. NRRL B-14911] Length = 74 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|291486493|dbj|BAI87568.1| hypothetical protein BSNT_05953 [Bacillus subtilis subsp. natto BEST195] Length = 218 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAE 196 A I ++I++ ++ + A T+RE LQ G +E+IAE Sbjct: 120 RAAARGEAIFRTVTAAKIISETFRAKQQPHAEELAEPFTKRELEVLQQMAYGLRNEDIAE 179 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KL +S TV ++ K +A +R QA+ AIR G + Sbjct: 180 KLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|269837395|ref|YP_003319623.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786658|gb|ACZ38801.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 249 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLS 201 E + A+ L+ RE L G +++EIAE L ++ Sbjct: 141 RPELAWRVLSEFRQLTGDDGEAGPASDPKRLPLSVREVEVLDCVAQGLSNKEIAEALFIT 200 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ S KL +R+QA+ A+R G++ Sbjct: 201 EQTVKNHMTSVLRKLQVNDRVQAVLCAVRNGWV 233 >gi|296453955|ref|YP_003661098.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183386|gb|ADH00268.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 286 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 221 PELDLLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 280 Query: 229 IRFGYI 234 G + Sbjct: 281 YDNGLV 286 >gi|238060304|ref|ZP_04605013.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|330469356|ref|YP_004407099.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|237882115|gb|EEP70943.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|328812327|gb|AEB46499.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 222 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184 + +V T+ + A D E K+R + + L+ RE L+L Sbjct: 105 AGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRL 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG + IA++L +S T ++ KL A NR QA+ A+R G + Sbjct: 165 LADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214 >gi|220907344|ref|YP_002482655.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863955|gb|ACL44294.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 209 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L ++ SS LTERE L L +G +++EIA L +S T+ ++ KLD + Sbjct: 136 ARLAERMSSP--QLTERERQVLMLMCEGKSNQEIALTLQISEGTIKFHVNGILRKLDVCD 193 Query: 221 RIQAIAKAIRFGY 233 R QA+ A++ G Sbjct: 194 RTQAVLVALKRGM 206 >gi|302344447|ref|YP_003808976.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641060|gb|ADK86382.1| transcriptional regulator, LuxR family [Desulfarculus baarsii DSM 2075] Length = 221 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 4/147 (2%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVI 146 + E + GG A A+P+ + YV+ + + + Sbjct: 74 RVVFEQGRRNVSDKWSMAHGGRRCNAVYAYPIFDEAGRVEYVLKIGFDVTDDRVSRRRLE 133 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 G + + L+ RE L+L G T+ EIA L +S HTV Sbjct: 134 RYVEGLERSLRGRPALAAPPAEAEESGLSGREMEVLRLVASGMTNNEIARALCISPHTVK 193 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++G+ KL +R A A R G Sbjct: 194 THVGNIFNKLGVNDRAMAAVTAARMGL 220 >gi|295696562|ref|YP_003589800.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295412164|gb|ADG06656.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 220 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ + L LT RE L G ++ EIA++L +S HTV ++ Sbjct: 129 LLAARIVAE-LHKEATPEDVLEPLTSRELEVLGYLSTGASNREIAKQLFISEHTVRNHIQ 187 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL NR+QA A AIR G Sbjct: 188 NILGKLHLTNRVQAAAYAIRQGI 210 >gi|262201875|ref|YP_003273083.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085222|gb|ACY21190.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 218 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 14/170 (8%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + ++ +L + G A + L + Sbjct: 51 VQRCRPDV--VVVDLKLTAGTEYEGLRLITEISGRHPGVATLVLTTFLDDDLVVRAVRAG 108 Query: 137 EFLMLANE-VIIEAHGACYQVITDFLELFKKRSS-----------AARNLTERETSCLQL 184 + + E A V + ++ LT+RE L+L Sbjct: 109 ARGYVVKDVDTTELVRAIQAVFGGGSAFDPRSAAIVLRSVSGDVDKPEALTDREREVLRL 168 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++ I + L +S TV ++ + KL R A+ A + G I Sbjct: 169 LADGLSNKRIGQTLFISESTVKFHIRNIIRKLGVSKRTDAVYIASKRGLI 218 >gi|239929757|ref|ZP_04686710.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|297202869|ref|ZP_06920266.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715208|gb|EDY59242.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 230 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 42/110 (38%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + V L + + ++D + A LT RE L L Sbjct: 113 DAGGDEIVRAVQSVLSGDAGLSPSIQRRLLERLSDPEPPQPAPAEAPDGLTAREVEVLAL 172 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T++EIA +L +S TV ++ + K +R QA+ A G + Sbjct: 173 IAEGLTNQEIARELHVSTATVKTHINNLFAKTGIKDRAQAVRYAYAKGLV 222 >gi|145595794|ref|YP_001160091.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305131|gb|ABP55713.1| response regulator receiver [Salinispora tropica CNB-440] Length = 221 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184 + +V T+ + A D E K+R + + L+ RE L+L Sbjct: 104 AGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRL 163 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG + IA++L +S T ++ KL A NR QA+ A+R G + Sbjct: 164 LADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213 >gi|167572464|ref|ZP_02365338.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 347 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 67/222 (30%), Gaps = 14/222 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FA + I + D L D + + Sbjct: 129 LLRLMGFATFAYFAIEFSRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 186 Query: 84 LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138 +P++W + + + +R+ +G+ + + + + +T+ Sbjct: 187 SMPVVWDLRQLARDHASRGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRMHAFASYTAPR 246 Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E ++ G + R AA LT E L +G + + Sbjct: 247 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASSRERAAERLTPFERELLVGIAEGASDK 305 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI +L S H V+ +L + NRIQ A G I Sbjct: 306 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 347 >gi|302869001|ref|YP_003837638.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315504528|ref|YP_004083415.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302571860|gb|ADL48062.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315411147|gb|ADU09264.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184 + +V T+ + A D E K+R + + L+ RE L+L Sbjct: 105 AGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRL 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG + IA++L +S T ++ KL A NR QA+ A+R G + Sbjct: 165 LADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214 >gi|229821303|ref|YP_002882829.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567216|gb|ACQ81067.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 231 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 157 ITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + ++++ A LTERE L L G T+ EI L ++ TV ++G Sbjct: 148 HLAAVLPDEQKTPTTALDALTEREREVLVLIARGRTNTEIGADLFVAEATVKTHVGRILA 207 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A +R+QA+ A G + Sbjct: 208 KLGARDRVQAVVIAYETGLV 227 >gi|308272248|emb|CBX28854.1| hypothetical protein N47_B20000 [uncultured Desulfobacterium sp.] Length = 225 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +V+ +E K++ A LT RE L+L +G + I EKL +S TV Sbjct: 132 LSCEVVNRLMETPTKKTKAKDLAYGALTPREQEVLRLLAEGMAPKAIGEKLFISPKTVEN 191 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KLD + + + A + G I Sbjct: 192 HRANIMSKLDLHSILDLVRYAAKVGLI 218 >gi|126665815|ref|ZP_01736796.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Marinobacter sp. ELB17] gi|126629749|gb|EBA00366.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Marinobacter sp. ELB17] Length = 219 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 18/149 (12%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGAC---- 153 + +L + I F V + M ++I + H A Sbjct: 68 EALRQLRAHNISSRIIMFTVSDQQDDVVEALRAGADGYLLKDMEPEDMIKQLHQAAVGKL 127 Query: 154 ------YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++ D L K + A +LT RE L L +G +++ I KL +S T Sbjct: 128 VISERLTSLLADALRNNKSQQPARPDFDSLTPREKDILNLIAEGLSNKMIGRKLDISDGT 187 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V ++ KL+ +R++ A+ G Sbjct: 188 VKVHVKHLLKKLNLRSRVEVAVWAVEEGL 216 >gi|21230586|ref|NP_636503.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769421|ref|YP_244183.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992608|ref|YP_001904618.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|21112164|gb|AAM40427.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574753|gb|AAY50163.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734368|emb|CAP52578.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 213 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|46199289|ref|YP_004956.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981321|ref|YP_144618.1| response regulator [Thermus thermophilus HB8] gi|46196914|gb|AAS81329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55772734|dbj|BAD71175.1| response regulator [Thermus thermophilus HB8] Length = 215 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A EV+++A +I DF + L+ERE L+L GYT++EIA + Sbjct: 116 RRVHAGEVLLDAE-LAGHIIQDFRAKKEASQPLHAELSEREVQILRLVAQGYTNQEIAAE 174 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L LS TV L KL NR QA AIR G Sbjct: 175 LQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210 >gi|296877022|ref|ZP_06901064.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296431966|gb|EFH17771.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 210 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 142 HDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFR 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|146295566|ref|YP_001179337.1| two component LuxR family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409142|gb|ABP66146.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLT 175 L F +GY++ +S+ + N ++ G V K+ +NL+ Sbjct: 94 SLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYVSDVLKRTSKQLFEKTQNLS 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ERE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 154 ERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|56964906|ref|YP_176637.1| two-component response regulator of extracellular proteinase [Bacillus clausii KSM-K16] gi|56911149|dbj|BAD65676.1| two-component response regulator of extracellular proteinase [Bacillus clausii KSM-K16] Length = 219 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 37/83 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V+T + LT+RE L+ G +++EIA L +S TV ++ Sbjct: 127 RIMKHVLTHVARSANSVADKVNRLTDREVDVLKEISTGKSNKEIAAALFISEKTVKTHVS 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL+ +R QA AI+ G Sbjct: 187 NLLGKLELQDRTQAALFAIQAGI 209 >gi|255535518|ref|YP_003095889.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] gi|255341714|gb|ACU07827.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] Length = 218 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + S LT RE L +G + EIA++L +S HTV ++ + KLD + Sbjct: 145 QIEEHDPSRLEELTVREKEVLHHICEGLRTREIADELFISPHTVESHRRNIMQKLDVRSS 204 Query: 222 IQAIAKAIRFGYI 234 + A+ + Sbjct: 205 SMLVKFAMNNNLV 217 >gi|54026224|ref|YP_120466.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017732|dbj|BAD59102.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 220 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---LELFKKRSSAARNLTERETSCLQL 184 ++A + A ++I + +K + LT RE L+L Sbjct: 108 DAPAEELVRAVRVVAEGQALLAPTVTRRLIAEVTSRRAASRKPAPELAALTPREREVLEL 167 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE L ++ TV ++ KL+ +R QA+ A G + Sbjct: 168 VARGMSNTEIAEALFVAEQTVKTHVSKVFSKLNLRDRAQAVVLAYESGLV 217 >gi|307704250|ref|ZP_07641169.1| response regulator [Streptococcus mitis SK597] gi|307622161|gb|EFO01179.1| response regulator [Streptococcus mitis SK597] Length = 210 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSRADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|297161877|gb|ADI11589.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 223 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + LTERE L+L G ++ EIA L +S TV ++G Sbjct: 135 RLLDKYAGHLPSGEEPVPDTLHTLTEREVEVLKLVAKGLSNAEIAADLFVSETTVKTHVG 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A G + Sbjct: 195 HVLTKLGLRDRVQAAVYAYESGLV 218 >gi|302535348|ref|ZP_07287690.1| two-component system regulator [Streptomyces sp. C] gi|302444243|gb|EFL16059.1| two-component system regulator [Streptomyces sp. C] Length = 223 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS---AARN 173 L +G+++ + LA V + A G ++IT+F L R+ Sbjct: 98 LRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRLGAPRAPSRARIEE 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L L G ++ EIA L ++ TV ++G VKL +R QA A G Sbjct: 158 LTERETEVLSLIAQGLSNGEIATHLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|302531265|ref|ZP_07283607.1| response regulator [Streptomyces sp. AA4] gi|302440160|gb|EFL11976.1| response regulator [Streptomyces sp. AA4] Length = 218 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + LT+RE L L G ++ EIAE L LS TV ++G KLD +R+QA+ Sbjct: 145 RDPAELDVLTDREREVLVLIAKGMSNVEIAETLFLSEATVKTHVGRILSKLDLRDRVQAV 204 Query: 226 AKAIRFGY 233 A G Sbjct: 205 VLAYETGL 212 >gi|152967753|ref|YP_001363537.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362270|gb|ABS05273.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 236 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 157 ITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++R+ A L+ RE L+L G + EIA LG+S +TV ++ + Sbjct: 153 FNAMRRRDEERNLGLPGAPRLSPRELDVLRLLARGMANREIAGSLGISENTVKNHVRNIL 212 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL +R++A+ A+R + Sbjct: 213 EKLQLHSRMEAVVYAVREKIV 233 >gi|302534277|ref|ZP_07286619.1| erythropoiesis-stimulating protein [Streptomyces sp. C] gi|302443172|gb|EFL14988.1| erythropoiesis-stimulating protein [Streptomyces sp. C] Length = 328 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 77/227 (33%), Gaps = 14/227 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L + RL ++ + ++ + Q + D D+ Sbjct: 116 AERLVGLDAIQSRLEVLARDLTVE-----CLSIMPGGAQSQASLDASRPLDEDALRRGIQ 170 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + Y D + + + + ++ + + P+ Sbjct: 171 IRTIYQDSV----RNDPATLAYVQWATDLGAQNRTSPVLPPRLVIFDRKTAVVPIDPANS 226 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 K G + T+ ++ + + E + + + +T E L+L Sbjct: 227 KLGALCTTAPGIVASLVSLFEQTWDQAVPLGAA-----REQATEDGITAGERELLKLLAS 281 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T E ++LG+S+ TV + + +L+A +R +A +A + G++ Sbjct: 282 GLTDEAAGKRLGVSLRTVRRQMSALMERLNATSRFEAGLRAAQRGWL 328 >gi|229916670|ref|YP_002885316.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229468099|gb|ACQ69871.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 230 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L+ RE L L DG ++ +I++ L +S TV ++ S K+D +R QA+ A Sbjct: 163 PVYQLLSRREVEVLHLLADGRSNRDISDMLFISEKTVKNHVSSVLRKMDVNDRTQAVVDA 222 Query: 229 IRFGYI 234 IR G++ Sbjct: 223 IRRGWV 228 >gi|294813229|ref|ZP_06771872.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441661|ref|ZP_08216395.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325828|gb|EFG07471.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R+ LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q Sbjct: 148 EPRNKEVDRLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLNLRDRVQV 207 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 208 VVLAYETGLV 217 >gi|297201415|ref|ZP_06918812.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713823|gb|EDY57857.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|152968160|ref|YP_001363944.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362677|gb|ABS05680.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 41/106 (38%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +LA V G + I + + LT RE L L G Sbjct: 118 AAVRTVAGGEQLLAPAVTRRLVGRFAERIREVAPGRGGAGAELAGLTPREVEVLGLIARG 177 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA +L +S TV Y+ KL +R+QA+ A R G + Sbjct: 178 LSNAEIAAELVISHETVKTYVSRILAKLGLRDRVQAVVLAYRTGLV 223 >gi|329939465|ref|ZP_08288801.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301694|gb|EGG45588.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 3/102 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ + + R LTERE + L G ++ Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPMLPDTNQR---PRHEGLERLTEREREVMVLVAQGLSNG 175 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L LS TV ++G KL +R+Q + A G + Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|37523973|ref|NP_927350.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214979|dbj|BAC92345.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + E + A LTERE LQL +G ++++IA++L ++V TV ++ + KL A Sbjct: 153 NAAEPEFTQILEASPLTERELEVLQLIVEGRSNQDIADQLYITVGTVKTHVRNILSKLCA 212 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA A+R G + Sbjct: 213 DDRTQAAVTALRAGLV 228 >gi|307324713|ref|ZP_07603919.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889595|gb|EFN20575.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 58/197 (29%), Gaps = 3/197 (1%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 I+ + P +Q + D + + E G + +I + Sbjct: 28 IDVVGEAPDGRQGVEVSRRAHPDVVLMDVRMPEMDGLEAARQLLDPPRGVIHRPKVLMLT 87 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 +G V + L + Sbjct: 88 TFDVDDYVYEALRAG--ASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR-RLIADFAR 144 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 S+ LT RET L+L G +++EIAE L L+ TV ++G KL Sbjct: 145 QRPAPRRDGPSARRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTHIGRVLAKLG 204 Query: 218 AVNRIQAIAKAIRFGYI 234 +R QA+ A G + Sbjct: 205 LRDRAQAVIFAYESGLV 221 >gi|302562273|ref|ZP_07314615.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479891|gb|EFL42984.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 35/77 (45%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + + LT RE L+L DG ++ EIA L +S TV ++ KL Sbjct: 142 YAARIRPVEDGAPRDLPLTPRELEVLRLIADGLSNSEIAAALLISQETVKTFVSRILAKL 201 Query: 217 DAVNRIQAIAKAIRFGY 233 +R+QA+ A R G Sbjct: 202 GLRDRVQAVVYAYRRGL 218 >gi|218658162|ref|ZP_03514092.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 144 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 1/116 (0%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + +G + + E +L+ E + + V FL R LT+RE Sbjct: 30 SLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGARVDRDFELTDRE 88 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 89 LECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 144 >gi|34497990|ref|NP_902205.1| nitrate/nitrite response regulator protein narL [Chromobacterium violaceum ATCC 12472] gi|34103845|gb|AAQ60206.1| nitrate/nitrite response regulator protein narL [Chromobacterium violaceum ATCC 12472] Length = 215 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + S + + ++ + L ++S A LT RE L G ++ Sbjct: 113 FLLDSIRRAVDGDSVLSPEMTAKLLAR--LRQPAAKASEADALTPRERETLGWLARGASN 170 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +EIA L L+ TV ++ + KL +R+QA A+ G Sbjct: 171 KEIARALDLAESTVKVHVQNILRKLSLSSRVQAAVYAVEHGL 212 >gi|269955414|ref|YP_003325203.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304095|gb|ACZ29645.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 212 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + A G T L ++A LT RE L L Sbjct: 103 AGATGYLLKDTPRDALVRGIRAAAQGQTVLAPTVATRLVGSVRASADRLTPREAQVLALV 162 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ E+ +L ++ TV +L A KL +R A+ +A R G++ Sbjct: 163 AEGCSNAEVGRRLFIAEATVKTHLLRAFAKLGVDDRTAAVTEARRRGWL 211 >gi|170688263|ref|ZP_02879473.1| germination protein GerE [Bacillus anthracis str. A0465] gi|254687022|ref|ZP_05150880.1| germination protein GerE [Bacillus anthracis str. CNEVA-9066] gi|170667769|gb|EDT18522.1| germination protein GerE [Bacillus anthracis str. A0465] Length = 74 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|163761091|ref|ZP_02168168.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162281642|gb|EDQ31936.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 260 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 15/221 (6%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L + +FAL + +L + I +LH+ ++ ++ + L Sbjct: 50 YRLLKDLAQEYSFDDFALLRLPQSL-KSANFRSIFDLHSLSEIELEMLDLEGGCSAEPVL 108 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKNGYVIFTS 136 H +P + + + + G L +AF + L + F Sbjct: 109 EHLMHWAVPYELRLTSNDAIDLAKG-----LLRHYGINVCVAFNLPSLTLTRYAIAFFAR 163 Query: 137 EFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + ++++A ++ L + R+ + L L +G TS++ Sbjct: 164 KDTPENRNTGALMLDALACFDRLNMHLLNADN-----SDEFDARDAAILSLTSEGLTSQQ 218 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA +L +S HTVNA + S +L +NR Q IA AIR G I Sbjct: 219 IAVELKISEHTVNANVASMIRRLGVLNRPQLIATAIRKGLI 259 >gi|89055833|ref|YP_511284.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88865382|gb|ABD56259.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 251 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 64/241 (26%), Gaps = 15/241 (6%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 ++E + E + L + IN A D Sbjct: 11 ITELAAHLLAADGFDERAVILDRALGALGGD-----WINIAEGSGDTMIPHWFYSTLPAD 65 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIA 119 + D +IW + + G A + Sbjct: 66 TLTAYASDAHWRRDTIYRTAMQSTPQVIWSQTGPRPGSGAGEDATFDTFIGDAGTKAIVT 125 Query: 120 FPV-RLGFHKNGYVIFTSE------FLMLANEVIIEAHGACYQVITDFLELFKKR--SSA 170 + + + S F I + + R Sbjct: 126 YTLQSTPVGDTRAISLISSLPTKEVFQPANLRDIADTIRLMLPWMDASATRETGRLVPYP 185 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L++RE + L G + I++ +G++ TV+ ++ +A KL A R +A AIR Sbjct: 186 VRQLSQREREAVTLLAGGLQTARISDAMGVAEVTVHKHIRNARHKLGARTREHLVAAAIR 245 Query: 231 F 231 Sbjct: 246 R 246 >gi|328881828|emb|CCA55067.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 223 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 36/233 (15%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + + R+ L LD Sbjct: 11 VDDHPMWRDAVARDLAEAGFDVVATAGDGEQAVRRALAVTPDVLVLDLN--------LPV 62 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ +L V + A + V+ G + Sbjct: 63 KPGVQVCKE--------------LVGGRPELRVLVLSASGEHADVLEAVKSGATGY-LLK 107 Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAA-------RNLTERETS 180 S ++ G V+ ++ L + + AA LTERET Sbjct: 108 SASTEELIDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAPAAGADEPKAPQLTERETE 167 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 168 VLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 220 >gi|182439643|ref|YP_001827362.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780308|ref|ZP_08239573.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468159|dbj|BAG22679.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660641|gb|EGE45487.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 223 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L A Sbjct: 97 LRAGASGFLLKDAPAAELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEDPVPDALH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|254250258|ref|ZP_04943578.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gi|124876759|gb|EAY66749.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] Length = 251 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 63/228 (27%), Gaps = 20/228 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYG 73 + LH + A FA + + + EL Sbjct: 22 ADWQRALHACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRLL 78 Query: 74 DDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVRL---------EGGLLPFAGIA 119 D +G ++ + +E S+ + R G Sbjct: 79 DPLHPSRCAAGDRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDAGRTVGAF 138 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTER 177 +R G F + + ++ L + R LT R Sbjct: 139 SLLRFGMGDANGNGTAGRFAPGEIDALARLQPVAEAALSPLLRARRGIHRIGCEERLTYR 198 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 E +L DGY+++EIA L L T+ +L KL NR + + Sbjct: 199 EEQIARLVRDGYSNKEIARDLALGPPTIKTHLMRMYRKLGVSNRTELV 246 >gi|120555604|ref|YP_959955.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] gi|120325453|gb|ABM19768.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] Length = 891 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + A +++RE L+L G +++EIA+KL +S+HTV + KLD +R Sbjct: 820 VAPAADPLAEPISDREQGVLELIAQGLSNQEIADKLHISLHTVKTHARRINAKLDVKSRT 879 Query: 223 QAIAKAIRFGYI 234 QAI +A G + Sbjct: 880 QAIVRARELGLL 891 >gi|282861875|ref|ZP_06270938.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562900|gb|EFB68439.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 214 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178 +R G Y + L A + H + L + + LTERE Sbjct: 98 LRAGACGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDAGGGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211 >gi|297194849|ref|ZP_06912247.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152490|gb|EDY64595.2| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%) Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G V+ ++ L + A LT+RET L+L G + ++IAE+L +S Sbjct: 132 GLAGLVLGEYRRLASEPGPPAGADEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHR 191 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 192 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 221 >gi|163753720|ref|ZP_02160843.1| Regulatory protein [Kordia algicida OT-1] gi|161325934|gb|EDP97260.1| Regulatory protein [Kordia algicida OT-1] Length = 146 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L +G++++EIA L +S T+ ++ + KLD R QAI KA + Sbjct: 83 GLSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKAKQLQ 142 Query: 233 YI 234 + Sbjct: 143 IL 144 >gi|91783993|ref|YP_559199.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687947|gb|ABE31147.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 213 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++++ ++ + +LTERE L+ +G ++ I + L +S TV ++G+ Sbjct: 130 VAHRILRSVRTARERVTDPFASLTEREMDVLRALAEGSSNGRIGKMLNISESTVKTHIGN 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA+A A R G I Sbjct: 190 VLAKLDLRDRTQAVAFAWRHGLI 212 >gi|300783016|ref|YP_003763307.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792530|gb|ADJ42905.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + +L EV G I ++ LT RE L+L +G Sbjct: 119 GIRTVATGAALLDPEVTRRLVGRHAARIRPV-----PGAAPEVPLTPRELEVLRLLAEGL 173 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ EIAE+L +S TV ++ KLD +R+QA+ A R G Sbjct: 174 SNSEIAERLVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL 217 >gi|19553213|ref|NP_601215.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62390849|ref|YP_226251.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21324779|dbj|BAB99402.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326187|emb|CAF20350.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 210 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 49/110 (44%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S L V A G ++ + ++ L+ RE L L Sbjct: 101 SAGAVGYLLKDSSPEDLIAGVRDAARGESVLSKQVASKIMGRMNNPMTALSAREIEVLSL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +KL L+ TV +++G KLD +R A+A+A + G I Sbjct: 161 VAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGII 210 >gi|225872928|ref|YP_002754385.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] gi|225794168|gb|ACO34258.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 8/148 (5%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 E E+ + +G I+ VR GY++ + LA +V Sbjct: 72 FDVARAILEFDPEARILVFSSAQGDASIHTAISLGVR------GYLLKGIDGAALAEQVR 125 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A G +L + + ++ L+ERE L L G +++EIA L ++ +TV Sbjct: 126 HVARGGSCLSPEAAEKLTQYIT--SKKLSERELEVLSLISKGKSNKEIAGLLFVTDNTVK 183 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL A +R QA+ AI+ G + Sbjct: 184 MHVKKILSKLQANDRTQAVVIAIQRGLL 211 >gi|254228707|ref|ZP_04922130.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262396571|ref|YP_003288424.1| transcriptional regulator VpsT [Vibrio sp. Ex25] gi|151938654|gb|EDN57489.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262340165|gb|ACY53959.1| transcriptional regulator VpsT [Vibrio sp. Ex25] Length = 210 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Query: 150 HGACYQVITDFL------ELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + +++ + E A LT RE L++ +G ++ EIA+ L +S Sbjct: 121 NWLSRRLLDQLVNYYRGKEANSIIEPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISE 180 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 HT+ ++L + KL+ NR QA + A R Sbjct: 181 HTIKSHLYNIFRKLEVKNRTQATSWARRN 209 >gi|194364877|ref|YP_002027487.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347681|gb|ACF50804.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 213 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNDFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|312623477|ref|YP_004025090.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kronotskyensis 2002] gi|312203944|gb|ADQ47271.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kronotskyensis 2002] Length = 211 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLT 175 L F +GY++ +S+ + N ++ G + K+ +NLT Sbjct: 94 SLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYISDVLKRTSKQYFEKTQNLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ERE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 154 ERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|239978584|ref|ZP_04701108.1| two-component response regulator [Streptomyces albus J1074] gi|291450480|ref|ZP_06589870.1| two-component system response regulator [Streptomyces albus J1074] gi|291353429|gb|EFE80331.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + LT+RE L+L G ++ EIA L +S TV ++G Sbjct: 135 RLLDKYAEHLPSGDEPVPDTLHTLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A G + Sbjct: 195 HVLNKLGLRDRVQAAVYAYESGLV 218 >gi|159897633|ref|YP_001543880.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890672|gb|ABX03752.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 218 Score = 94.9 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 37/95 (38%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + EA EL R S LTERE L G ++ EIAE L Sbjct: 117 AIRAARRGEATLHPMVASRLMTELTSSRRSPLDTLTEREREVLTCIARGMSNAEIAEHLV 176 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV ++ + KL +R QA A+R + Sbjct: 177 IGERTVKTHVSNILSKLHLQDRTQAAIMALRERLV 211 >gi|299822491|ref|ZP_07054377.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299816020|gb|EFI83258.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 212 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L +G ++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 146 HDELTNRENEILLLIAEGKANQEIADELYITLKTVKTHVSNILSKLDVQDRTQAAIYAFQ 205 Query: 231 FGYI 234 + Sbjct: 206 HDLV 209 >gi|297198721|ref|ZP_06916118.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715398|gb|EDY59432.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 213 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178 +R G Y + L A + H +V L + S R +LTERE Sbjct: 97 LRAGAAGYVYKDIDPDALAGAIRSVHAGHILLQPEVAGVLLSQEENNSGQGRGGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211 >gi|84495164|ref|ZP_00994283.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84384657|gb|EAQ00537.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 219 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K S R LT RE L+L G ++ EIA +L ++ TV ++ KL +R QA Sbjct: 147 PKDSPRLRELTPRELEVLELIARGLSNVEIATRLFVAEQTVKTHVSRVLAKLGLRDRAQA 206 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 207 VVFAYEHGVV 216 >gi|226303587|ref|YP_002763545.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226182702|dbj|BAH30806.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 205 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 48/107 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + L + V A G +L + +L+ RE L+L Sbjct: 97 AGASGYLLKDTPPVELLSAVRAAASGDSVLSPAIASKLMTRVRKPETSLSPREIEVLKLV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G ++ EI ++L LS TV ++L KL +R A+A+A G Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARARELG 203 >gi|209549305|ref|YP_002281222.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535061|gb|ACI54996.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 251 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 72/242 (29%), Gaps = 13/242 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + E + + LS +H ++ + A N A + + Y Sbjct: 8 LPEAFHCIRNLHEIGHLSAIVHQLRALVGAANLAYQALFIPGRMANER---LVAETYSDR 64 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + D P+ W + + + + E + GI+ Sbjct: 65 WKKLYQSKNYLRTDPIEIAARKTSQPLDWGHL--RSASKETASFFAEAERHGVGNNGISI 122 Query: 121 PVRLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSS---AAR 172 P+ TS + + E+ K ++ Sbjct: 123 PLVDAQAGRALFSVTSNLEGEDWATFKGRALPSLIQIGKAIQLRTAEIETKPAAQPSRVA 182 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +ET L L GY ++I + +S V A L SAT KLDA A A+ G Sbjct: 183 ALTTKETDYLALYVAGYAIKQIGDMRSVSGTAVRAALNSATEKLDARGPRHAGYLAVALG 242 Query: 233 YI 234 I Sbjct: 243 II 244 >gi|83588897|ref|YP_428906.1| two component LuxR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571811|gb|ABC18363.1| two component transcriptional regulator, LuxR family [Moorella thermoacetica ATCC 39073] Length = 221 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 42/84 (50%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + L + LTERE L+LA +G T+ EIA +L +SV TV A+ Sbjct: 133 RRVIEGLQERLPFTRASRPEGPELTERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRA 192 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ + AI+ G + Sbjct: 193 NIMQKLGLHDRVDLVKYAIKNGIL 216 >gi|21220292|ref|NP_626071.1| two component response regulator [Streptomyces coelicolor A3(2)] gi|5123537|emb|CAB45293.1| putative two component response regulator [Streptomyces coelicolor A3(2)] Length = 210 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSA--ARNLTERE 178 +R G Y + L A + H +V L + S A +LTERE Sbjct: 94 LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESSSGPGRAGSLTERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 154 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 207 >gi|294631853|ref|ZP_06710413.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|292835186|gb|EFF93535.1| two-component system, regulatory protein [Streptomyces sp. e14] Length = 229 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------- 171 FP L GY+ + + V G + L + S Sbjct: 98 LFPA-LRAGARGYLTKDAGGDEIVRAVESVLSGEAGLAPSIQRRLLEHLSEPEPEPWATP 156 Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE + L +G +++EIA +L +S TV ++ + K +R QA+ Sbjct: 157 ADQAPDGLTARECEVVVLIAEGLSNQEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVR 216 Query: 227 KAIRFGYI 234 A G + Sbjct: 217 YAYAKGLV 224 >gi|271963471|ref|YP_003337667.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506646|gb|ACZ84924.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 205 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +L+ RE + L Sbjct: 95 AGAAGYLLKDAPTDDLLDAIRAVARGETILAPPVAARLVTRMRSPRASLSPREVEIVLLV 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ +IA +L +S TV ++L KL+ NR A+ A R G + Sbjct: 155 ADGLSNRQIARELFISEATVKSHLVHIYAKLEVDNRTGAVKVARRRGLL 203 >gi|171915509|ref|ZP_02930979.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 209 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 7/149 (4%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-------EFLMLANEV 145 + + +++ +L + V G + + Sbjct: 57 DFKMPGQDGAEITKQLRLEFPDARVVLLTVFEGEEDIWRAVQAGASGYVSKSAEVEELLE 116 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++ A Q + + A LT RE L+ GY+++EIA KL +S TV Sbjct: 117 VVRRIFAGEQYFSPNVAAKLAARQARNALTPRELQVLRHIVAGYSNKEIAAKLHMSEATV 176 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL+ +R QA +A++ G + Sbjct: 177 KLHISNTLDKLNVADRTQAAIEAVKRGIV 205 >gi|145295913|ref|YP_001138734.1| hypothetical protein cgR_1838 [Corynebacterium glutamicum R] gi|140845833|dbj|BAF54832.1| hypothetical protein [Corynebacterium glutamicum R] Length = 210 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 49/110 (44%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S L V A G ++ + ++ L+ RE + L Sbjct: 101 SAGAVGYLLKDSSPEDLIAGVRDAARGESVLSKQVASKIMGRMNNPMTALSAREIEVVSL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +KL L+ TV +++G KLD +R A+A+A + G I Sbjct: 161 VAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGII 210 >gi|256396450|ref|YP_003118014.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362676|gb|ACU76173.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 211 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + LA V + A G +L + R AA+ LT RE L L Sbjct: 102 AGATGYLLKDTPRADLAEAVRLAARGETVLAPAVAAKLVSRLRQPAAQPLTPREREVLAL 161 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EI +L +S TV +L A KL +R A+ KA+ G + Sbjct: 162 VARGLANAEIGRELFISEATVKTHLVRAFGKLGVDDRTAAVTKAMAQGLL 211 >gi|296119236|ref|ZP_06837805.1| two-component system response regulator [Corynebacterium ammoniagenes DSM 20306] gi|295967757|gb|EFG81013.1| two-component system response regulator [Corynebacterium ammoniagenes DSM 20306] Length = 212 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + + L + V A G L + + +LT RE LQL Sbjct: 104 AGAVGYLLKDAPPVELTSAVRSAAEGDSALSSMVADRLMTRVRTPRSSLTPRELEVLQLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI ++L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNREIGQELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212 >gi|302544315|ref|ZP_07296657.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461933|gb|EFL25026.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCL 182 G+++ +E L N V A G + L + S LTERET L Sbjct: 96 RAGAIGFLLKNAEADDLRNAVKAAAAGQIHVSPAAISRLMGQVREPSGPEQLTERETEVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G ++EIA L + TV Y+ KL +R QA A++ G + Sbjct: 156 TMLARGKANKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207 >gi|218441961|ref|YP_002380290.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218174689|gb|ACK73422.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 210 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V+++ +++ NL+ERE L+L +G ++ EIAE+L LS +T+ ++ Sbjct: 127 LIARLVLSNLKAPIPQQNLNISNLSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVR 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 187 GIMNKLAVDDRVQAAVVALRSGIV 210 >gi|28378203|ref|NP_785095.1| response regulator [Lactobacillus plantarum WCFS1] gi|254556410|ref|YP_003062827.1| response regulator [Lactobacillus plantarum JDM1] gi|28271038|emb|CAD63943.1| response regulator [Lactobacillus plantarum WCFS1] gi|254045337|gb|ACT62130.1| response regulator [Lactobacillus plantarum JDM1] Length = 217 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L GY+++EIA KL +S TV A+ + KL NR I AI Sbjct: 154 GLSKREREVFPLVALGYSNKEIAAKLFISTKTVEAHKANIMRKLALNNRADLIRYAIHHH 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|288553643|ref|YP_003425578.1| transcriptional regulator [Bacillus pseudofirmus OF4] gi|288544803|gb|ADC48686.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus pseudofirmus OF4] Length = 74 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE +L T+ EIA++L +S TV ++ + KL R QA+ + I Sbjct: 8 PKPLLTKREREVFELLVQDKTTREIAQELFISEKTVRNHISNTMQKLGVKGRSQAVIELI 67 Query: 230 RFGYI 234 R G I Sbjct: 68 RLGEI 72 >gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] gi|254040371|gb|ACT57167.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 16/215 (7%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 R++ + + A +F L + F ++ ++ D + + + L Sbjct: 48 RMYALTEYVGASHFLLVRWDL---FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ T+ E+ G + + F V + G ++ + Sbjct: 105 PTELFCPVF------HTLPEN----ITPPAGMDNRYCSLTFDV--ARIRIGLMLLFPKGR 152 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 ++ + + E F LT RE CL +G TS+EIA LG Sbjct: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILG 211 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +TVN Y+ S K R AIA A+R + Sbjct: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 >gi|148983791|ref|ZP_01817110.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923938|gb|EDK75050.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|301799497|emb|CBW32043.1| response regulator protein [Streptococcus pneumoniae OXC141] Length = 210 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQATVYAFQHHLV 205 >gi|73537441|ref|YP_297808.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134] gi|72120778|gb|AAZ62964.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia eutropha JMP134] Length = 947 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 5/152 (3%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLA 142 I+ + T + + + G + + L Sbjct: 797 ILLAQAYQRTGDGAQALVVMAEALRFGAAEGF-VRIFADEGDEVRRLVAQACARQGGNLP 855 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + GAC Q + LT +E LQL +G+++ +A++L +S Sbjct: 856 SAYVERLLGACGQGPDVAPSGQAAPAPLVEPLTPKEQKVLQLLAEGFSNVAMAQRLFVSE 915 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + + KL A NR QA+A A + G + Sbjct: 916 TTVRTHLRNISAKLHASNRTQAVAIARQLGLL 947 >gi|85703125|ref|ZP_01034229.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. 217] gi|85672053|gb|EAQ26910.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. 217] Length = 251 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 10/228 (4%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILI 69 ++S++EL L N+ D+ Sbjct: 13 AASIEELWDLHTRFMADYGFDRLIYGYTRYRTATSLGDPDDFLMLTNHSPRYTDVFVGEG 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFP---VR 123 + + W +++ + + AG + + Sbjct: 73 LYFNAPMVRWALDNDGACSWSVLRDMIDSGTLTKQERRVFEFNQSHGVTAGYSISFKSLS 132 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETS 180 + + + + + + L ++ R LT R+ Sbjct: 133 PRTKGAIALTAQKGMMQSEVDALWKKSGEQILALNNVAHLRILSLPYTAPGRALTPRQRE 192 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L GDG T ++IA +GL+ TV +L A L QA+ KA Sbjct: 193 VLGWVGDGKTVQDIAIIMGLTSDTVEKHLRLARHALSVETTAQAVLKA 240 >gi|16080942|ref|NP_391770.1| two-component response regulator YxjM [Bacillus subtilis subsp. subtilis str. 168] gi|221311860|ref|ZP_03593707.1| hypothetical protein Bsubs1_20996 [Bacillus subtilis subsp. subtilis str. 168] gi|221316184|ref|ZP_03597989.1| hypothetical protein BsubsN3_20907 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321096|ref|ZP_03602390.1| hypothetical protein BsubsJ_20855 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325380|ref|ZP_03606674.1| hypothetical protein BsubsS_21006 [Bacillus subtilis subsp. subtilis str. SMY] gi|20141933|sp|P55184|YXJL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yxjL gi|1783236|dbj|BAA11713.1| yxjL [Bacillus subtilis] gi|2636426|emb|CAB15917.1| two-component response regulator [YxjM] [Bacillus subtilis subsp. subtilis str. 168] Length = 218 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAE 196 A I ++I++ ++ + A T+RE LQ G +E+IAE Sbjct: 120 RAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAE 179 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KL +S TV ++ K +A +R QA+ AIR G + Sbjct: 180 KLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|325520628|gb|EGC99691.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 109 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + +++ F+ + K A LT RE L +G T+ EI + L +S TVN Sbjct: 21 WLANLSHSLMSRFM-VPKLSPEARVALTAREREVLCWTAEGKTACEIGQILSISERTVNF 79 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL A N++QA+ KAI G I Sbjct: 80 HVNNILEKLGATNKVQAVVKAISAGLI 106 >gi|324991970|gb|EGC23892.1| DNA-binding response regulator [Streptococcus sanguinis SK405] Length = 210 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|303263546|ref|ZP_07349469.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|302647319|gb|EFL77543.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] Length = 211 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|159039051|ref|YP_001538304.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917886|gb|ABV99313.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 221 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184 + +V T+ + A D E K+R + + L+ RE L+L Sbjct: 104 AGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRL 163 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG + IA++L +S T ++ KL A NR QA+ A+R G + Sbjct: 164 LADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213 >gi|302525941|ref|ZP_07278283.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434836|gb|EFL06652.1| two-component system response regulator [Streptomyces sp. AA4] Length = 214 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 I +LA + ++ + ++ LTERE L+L G ++ Sbjct: 112 EIVAGIRTVLAGDSLL----FPAAIRGMAARRSPGAAAPLDFLTERERDVLRLMAAGLSN 167 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L L + TV ++G+ KL A +R QA+ +A G++ Sbjct: 168 GEIAAELYLGLQTVKTHVGNVLSKLGARDRTQAVIRAYESGFV 210 >gi|256788589|ref|ZP_05527020.1| two component response regulator [Streptomyces lividans TK24] gi|289772481|ref|ZP_06531859.1| two component response regulator [Streptomyces lividans TK24] gi|289702680|gb|EFD70109.1| two component response regulator [Streptomyces lividans TK24] Length = 213 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSA--ARNLTERE 178 +R G Y + L A + H +V L + S A +LTERE Sbjct: 97 LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESSSGPGRAGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|302518567|ref|ZP_07270909.1| two-component system regulator [Streptomyces sp. SPB78] gi|302427462|gb|EFK99277.1| two-component system regulator [Streptomyces sp. SPB78] Length = 226 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 34/232 (14%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + ++A F L R+ D + L Sbjct: 13 VDDHPMWRDAVARDLEAAGFELVATAGDGPQAVRRATAT-----RPDVLVLDLNLPGL-- 65 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + +L V + A + V+ G Sbjct: 66 -PGVEVCKRLVR--------------ERPELHVLVLSASGEHADVLEAVKSGATGYLVKS 110 Query: 134 FTSEF--LMLANEVIIEAHG---ACYQVITDFLELFKKRSS-------AARNLTERETSC 181 ++E + + +A V+ ++ L + LTERET Sbjct: 111 ASTEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPETPRLTERETEV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 171 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 222 >gi|218291120|ref|ZP_03495135.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|258511821|ref|YP_003185255.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238931|gb|EED06139.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|257478547|gb|ACV58866.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 75 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L T++EIA +L +S TV ++ + KL+ R QA+ + +R G Sbjct: 13 LTNREREVFELLVQDKTTKEIASQLFVSEKTVRNHISNVMKKLNVKGRSQAVVELVRLGE 72 Query: 234 I 234 I Sbjct: 73 I 73 >gi|297158982|gb|ADI08694.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 37/74 (50%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L S LT RET L+L +G ++ EIA +L +S TV ++ KL A + Sbjct: 144 LRPHTAEPSPLALLTPRETEVLRLIAEGLSNAEIAARLTVSAETVKTHVSRVLAKLGARD 203 Query: 221 RIQAIAKAIRFGYI 234 R QA+ A FG + Sbjct: 204 RAQAVMLAYEFGLV 217 >gi|171912672|ref|ZP_02928142.1| two-component response regulator [Verrucomicrobium spinosum DSM 4136] Length = 210 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY+ ++ L + G Y L ++ + RE L Sbjct: 101 RAGALGYLQKSAPREDLLKAIRTVGLGKRYLPGDIAQRLAERLGRPEP--SPREREVLAQ 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA LGLS TV ++ + KL A +R QA+ +AIR G + Sbjct: 159 MAKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQDRTQAVTEAIRRGLL 208 >gi|301059949|ref|ZP_07200832.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] gi|300445958|gb|EFK09840.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] Length = 294 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L + +G ++ EI+ L +S HTV +++ KL +R QA A R Sbjct: 233 PLTPRELEVLCILAEGTSNNEISHMLNISPHTVKSHIIHIFNKLGVNDRTQAAVWAARHN 292 Query: 233 YI 234 I Sbjct: 293 LI 294 >gi|302867524|ref|YP_003836161.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302570383|gb|ADL46585.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 219 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194 + + ++ V + + A LT RE L+L DG + EI Sbjct: 119 GIRTVASGAALLAPEVTRQLVGRYAARIRPAEGTPADVGLTPRELEVLRLIADGLANSEI 178 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L +S TV Y+ KLD +R+QA+ A R G + Sbjct: 179 AARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTGLV 218 >gi|222148404|ref|YP_002549361.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|68449749|gb|AAY97861.1| AvsR [Agrobacterium vitis] gi|221735392|gb|ACM36355.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 12/234 (5%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + ++S + + L+ +Q + + H +D + D Sbjct: 13 WLETATSAK-WTDFLNRLQISYNLSGCLYMDASITSAGALVYRYG---HTFDKQAKDPIL 68 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 +L + L + + P+ + + E L +L LP +++P+ Sbjct: 69 MLDAPVLRNVLSQLSRAMEPVDMHDL--AQLSEEGLLLRSKLRDLPLPRQAVSYPLLSVD 126 Query: 127 HKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFL-ELFKKRSSAARNLTERETS 180 + + S + H + + R LT RE Sbjct: 127 GRGAILAIASNACEEEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGTRLGGVPTLTRREQE 186 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G + E A LG+S TV ++ +A KLDAV+ QA+AKA++ G I Sbjct: 187 TLRWTAAGKSYWETAVILGISERTVRYFMANARTKLDAVSNTQAVAKALQRGLI 240 >gi|254393044|ref|ZP_05008206.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706693|gb|EDY52505.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%) Query: 151 GACYQVITDFLELFKKRSSA-------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G V+ ++ L + + A LT+RET L+L G + ++IAE+L +S Sbjct: 123 GLAGLVLGEYRRLAGEPAPTPGGPEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVISHR 182 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 183 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 212 >gi|328883286|emb|CCA56525.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 94.9 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ + + + E K LT+RE + L G ++ Sbjct: 119 VHSGDAVVAPSTTRRLLDRFSPMLPSSGKEPEHKELG---RLTDREREVMLLVAQGLSNG 175 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L LS TV ++G KL +R+Q + A G + Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYESGLV 217 >gi|297624725|ref|YP_003706159.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165905|gb|ADI15616.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 210 Score = 94.9 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE ++L GY++ EIA L +S TV ++ S KL +R + Sbjct: 140 DYPSLETPDPLTGREREVVRLMAGGYSNREIALALHISQGTVKNHVSSVLSKLGVRDRTR 199 Query: 224 AIAKAIRFGYI 234 A+ KA+ GY+ Sbjct: 200 AVLKALELGYV 210 >gi|159897512|ref|YP_001543759.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890551|gb|ABX03631.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 213 Score = 94.9 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 1/114 (0%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARNLTERETS 180 +R G + L+ A + +I +L + +LT+RE Sbjct: 98 LRAGATGYVLKRAAATELVSAIRAVQRGDSYLDPALIAKLNQLGDSDTVKLADLTDRELE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G T+ +IA +L +SV TV ++ + KLD +R + AIR G I Sbjct: 158 VLKLVAEGLTNRQIAAQLVISVKTVQSHRTNIMEKLDLHDRTDLVKYAIRRGMI 211 >gi|221633346|ref|YP_002522571.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] gi|221155795|gb|ACM04922.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] Length = 246 Score = 94.9 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ ++ L K + ++L++RE + L+L GY + +IA+ L L+ TV L + Sbjct: 155 LAPILMREYQRLLTKAPTRGQDLSDRELTMLRLLAQGYNNRQIADALNLAESTVKNNLSA 214 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA+ AI G + Sbjct: 215 LFQKLGVRDRTQAVIYAISHGLV 237 >gi|329941415|ref|ZP_08290694.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299946|gb|EGG43845.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 94.9 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L+L DG ++ EIA L +S TV ++ KL+ +R+QA+ Sbjct: 159 APEDIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTFVSRILTKLNLRDRVQAVVY 218 Query: 228 AIRFGY 233 A R G Sbjct: 219 AFRHGL 224 >gi|225020347|ref|ZP_03709539.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii ATCC 33806] gi|224946736|gb|EEG27945.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii ATCC 33806] Length = 223 Score = 94.9 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA------ 170 L +G++ SE LA V A+G +IT L+ + Sbjct: 96 LRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATRSLITRMLQPTETDPEPYANPEL 155 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G +++EIA++L +S+HT ++G+ KL A +R Q + Sbjct: 156 IDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYE 215 Query: 231 FGYI 234 G + Sbjct: 216 SGLV 219 >gi|167646083|ref|YP_001683746.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348513|gb|ABZ71248.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 244 Score = 94.9 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 78/239 (32%), Gaps = 24/239 (10%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFAL----YTINSALDFPRRQQLICELHNY 57 S N + +++++ + L + + + + P + Sbjct: 20 SRNLASERRAAAGPD--QGLRALAHEHGFYSALYLHIGHAACGRAAAPEGPPSRLVASS- 76 Query: 58 DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 + G P W + E+ G G Sbjct: 77 -PIALRQYGEA--LTGSSIARRAAGSHRPFAWTNTDEDMP------------GLSGRHVG 121 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLT 175 +A PV+ G V + L + E A + + L R +A LT Sbjct: 122 LAIPVQDHAAGPGLVALIGQDLDRVRRLAREEAAALAFAAAELHQSILASVRPAATAALT 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL+ A G T + + LG++ TV +L + KLDA N++ A+A A+ G + Sbjct: 182 AREIECLRFAAVGRTVADTGQALGITSRTVEFHLKNVAEKLDATNKVHAVAIAVSQGLV 240 >gi|328882017|emb|CCA55256.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARN 173 L +G+V+ +A V + A G + + L + Sbjct: 111 VTAALSAGASGFVLKRLPVRQIAEAVRVVAAGEAILFPATLRRMVAVRPLDSAAALPRAA 170 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE L +S+ TV ++G+ KL A NR A+ A G Sbjct: 171 LTGREEEVLRLMATGLSNPEIAESLTVSLETVKTHVGNVLTKLGAQNRTHAVVIAYESGL 230 Query: 234 I 234 + Sbjct: 231 V 231 >gi|294628215|ref|ZP_06706775.1| regulatory protein, LuxR [Streptomyces sp. e14] gi|292831548|gb|EFF89897.1| regulatory protein, LuxR [Streptomyces sp. e14] Length = 331 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 69/227 (30%), Gaps = 13/227 (5%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L + RL + F + + Q + D + Sbjct: 118 AERLVGLDAIQRRLESLAR-----GFEEECLAIEPGGAQSQASLDASRPLDAQALARGVR 172 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 L Y D + + E + + + + P+ Sbjct: 173 LRTVYQDS----ARNDPATSAYARWISEQGGQVRTSPILPPRMLIFDRSTAVVPIDPANT 228 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + G + ++ ++ + + E + E L+L Sbjct: 229 RLGALCTSAPGIVASLVALFEQTWQAAVPFGTDHRGSLDDADVI----PAERELLRLLAS 284 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T E ++LG+S+ TV + + +LDA +R +A KA + G++ Sbjct: 285 GMTDEAAGKRLGVSLRTVRRQMAALMQRLDASSRFEAGLKAAQRGWL 331 >gi|305679871|ref|ZP_07402681.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305660491|gb|EFM49988.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 223 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA------ 170 L +G++ SE LA V A+G +IT L+ + Sbjct: 96 LRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATRSLITRMLQPTEADPEPYANPEL 155 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G +++EIA++L +S+HT ++G+ KL A +R Q + Sbjct: 156 IDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYE 215 Query: 231 FGYI 234 G + Sbjct: 216 SGLV 219 >gi|228995587|ref|ZP_04155253.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] gi|229003214|ref|ZP_04161054.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228758053|gb|EEM07258.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228764159|gb|EEM13040.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] Length = 216 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R Q Sbjct: 143 EQNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQ 202 Query: 224 AIAKAIRFGY 233 A A+R+G Sbjct: 203 AAIYAVRYGI 212 >gi|254476478|ref|ZP_05089864.1| autoinducer-binding transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214030721|gb|EEB71556.1| autoinducer-binding transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 252 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARN----FALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + +L+EL L ++ + + + + + L N+ + + Sbjct: 12 AAKTLEEL--WLEHVRQMGDYKFDKLLYGYTRQKTKTSLGDPEDFV-ILSNHCSEYVEGF 68 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFPV 122 + L P W +Q++ + S Q + AG Sbjct: 69 VNSGLYFDAPMLHWALENDGPGSWTLVQDQISNGGLSESAQKVLEFNAKHGVTAGYTVSF 128 Query: 123 RLGFHKN-GYVIFTSEFL--MLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTE 176 + G + + E I HG ++ + L R+LT Sbjct: 129 NSSSDRFKGAISLAACDGLNQDDVEDIWREHGRDITLMNNMAHLKILTLPYQPPNRSLTR 188 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+ LQ GDG T+++IA +GL+ TV +L A L A+ KA Sbjct: 189 RQREALQWVGDGKTTQDIAVLMGLTTATVEKHLRLAREALSVETTAHAVLKA 240 >gi|54025090|ref|YP_119332.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016598|dbj|BAD57968.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + ++ LT RE L+ G ++ EIA +L LS TV ++G KL +R+QA+ Sbjct: 147 RDAAVLDVLTAREREVLEQIAAGRSNAEIAAELFLSEATVKTHVGRVLTKLGLRDRVQAV 206 Query: 226 AKAIRFGYI 234 A G + Sbjct: 207 VLAYETGLV 215 >gi|318061446|ref|ZP_07980167.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318077421|ref|ZP_07984753.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 229 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 1/103 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 +F + ++ A +++T + L+ RE L L G ++ Sbjct: 121 ELFAAVRATADGRSVL-APAVASRLVTSLRAPGADETPPRTPLSAREREVLALVARGTSN 179 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L LS TV +L KL +R A+A G + Sbjct: 180 REIARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 222 >gi|315221997|ref|ZP_07863908.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188963|gb|EFU22667.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 210 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|259418954|ref|ZP_05742871.1| putative autoinducer binding domain protein [Silicibacter sp. TrichCH4B] gi|259345176|gb|EEW57030.1| putative autoinducer binding domain protein [Silicibacter sp. TrichCH4B] Length = 194 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 60/209 (28%), Gaps = 21/209 (10%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L I ++ F+ Y I Q + D + D F Sbjct: 3 TTLQSIGAELEKLGFSKYAIGKGFHGSEPQ----FTSTFREDWQNHYFENGFFNLDPLPF 58 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 +G PI W I+ + G AF + GYV+ + Sbjct: 59 CALAGTAPIRWTEIKRRMRKSP----VMNAAEDYGMNEGFAFSLN------GYVVSSVHD 108 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L+ + V L S LT + + L G G +IA+ L Sbjct: 109 GSLSKGDL-------QFVQESIRRLAISSSDMIEPLTSSQQGLVDLLGVGLQYNQIADIL 161 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G+SV V + K A + Q + Sbjct: 162 GISVDGVKSAKKRLFQKYGANSDAQLLRI 190 >gi|297625882|ref|YP_003687645.1| LuxR family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921647|emb|CBL56204.1| Regulatory protein, LuxR:Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 232 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 32/235 (13%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 PR + + + ++ + ++ D ++ T D L Sbjct: 12 EPRPEGPRRVVLVDDHDIFRAGVRHELTAAAPDEIDVVGEAGDVEQAVKVITGTTPDVVL 71 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + ++ ++ +A V VI Sbjct: 72 --------------LDVHLPGGGGAEVVRQVHQIDPKITFLALSVSDAAEDVIAVIRAGA 117 Query: 138 FL----MLANEVIIEAHGACY---QVITDFLELF-----------KKRSSAARNLTERET 179 ++ ++EA G V + L F + L++RE Sbjct: 118 RGYVTKSISTADLVEAIGRVATGDAVFSPRLAGFVLDAFSGSISVESIDEDLDRLSQRER 177 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L GYT +E+A +L +S+ TV ++ + KL NR + A + Sbjct: 178 EVMKLIARGYTYKEVARELFISIKTVETHVSNVLRKLQLSNRHELTKWATDRKLV 232 >gi|326328660|ref|ZP_08195000.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325953621|gb|EGD45621.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 14/109 (12%) Query: 140 MLANEVIIEAHGACY------------QVITDFLELFKKR--SSAARNLTERETSCLQLA 185 + + + A + QVI F +KR + LTERE L+ Sbjct: 108 DASPDELASAIRVVHAGEALLSPSVTRQVIAQFARAPRKRKQDPRLKQLTEREREVLENI 167 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA +L L+ TV ++ KL +R QA+ A G + Sbjct: 168 ARGSSNSEIAAELFLAEQTVKTHVSRILGKLGLRDRAQAVVFAYESGLV 216 >gi|307328222|ref|ZP_07607400.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886056|gb|EFN17064.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 232 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCL 182 G+++ +E L N V A G + L + S LTERET L Sbjct: 99 RAGAIGFLLKNAEADDLRNAVKAAAVGQIHVSPAAISRLMGQVREPSGPEQLTERETEVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G ++EIA L + TV Y+ KL +R QA A++ G + Sbjct: 159 TMLARGKANKEIAHDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 210 >gi|300779699|ref|ZP_07089555.1| LuxR family DNA-binding response regulator [Corynebacterium genitalium ATCC 33030] gi|300533809|gb|EFK54868.1| LuxR family DNA-binding response regulator [Corynebacterium genitalium ATCC 33030] Length = 198 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V+ A L ++ L+ RE L+ Sbjct: 90 AGAMGYLLKDAPEDELHDAVVAAAQRERTLSPQVANTLAERVLKPDEALSGREIELLKAL 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE L +S TV +L KL NR A+ KA I Sbjct: 150 QTGMSNREIAEALFISQATVKTHLIHIYAKLGVDNRTAAVDKARERRII 198 >gi|226311283|ref|YP_002771177.1| germination protein [Brevibacillus brevis NBRC 100599] gi|226094231|dbj|BAH42673.1| germination protein [Brevibacillus brevis NBRC 100599] Length = 76 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T++EIA +L +S TV ++ + KL R QA+ + +R G Sbjct: 14 LTNREREVFELLVQDKTTKEIAGQLFISEKTVRNHISNVMQKLGVKGRSQAVVELVRLG 72 >gi|89098035|ref|ZP_01170921.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087198|gb|EAR66313.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L NG+++ TS+ L + G +V+ L+ + LT Sbjct: 94 LREGTNGFLLKTSDGPRLLQSIRSCLEGGISIHEQVAAKVMPKLLDHSCHEEAEV-PLTP 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G G T++EIA +L LSV TV +L KLD +R Q A++ + Sbjct: 153 RERDIARLIGHGKTNKEIANELYLSVGTVKNHLTQILQKLDLRDRTQLAIFAVKNDIL 210 >gi|295839668|ref|ZP_06826601.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|197698511|gb|EDY45444.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 239 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178 +R G Y E L A + H +V L ++ +R +LTERE Sbjct: 123 LRAGAAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVARTLLAQEEQAPQPSRGGSLTERE 182 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R GY Sbjct: 183 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGY 237 >gi|254411603|ref|ZP_05025379.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181325|gb|EDX76313.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 225 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL++RE L+L +G ++ EIA KL LS +TV ++ KL +R+QA A+R G Sbjct: 164 NLSQRELEVLKLIVEGNSNPEIAAKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVALRSG 223 Query: 233 YI 234 + Sbjct: 224 IV 225 >gi|16330324|ref|NP_441052.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652813|dbj|BAA17732.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 226 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 43/83 (51%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V+ + + + +L+ERE L+L +G +++EIA+ L LS +T+ ++ Sbjct: 144 IARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRG 203 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 204 IMNKLSVDDRVQAAVIALRSGLV 226 >gi|297567226|ref|YP_003686198.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851675|gb|ADH64690.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 212 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 SE + A+ + H + + + + R +LT RET L+L G++++ IA Sbjct: 117 SEAIHAASRGEVRLHPEAAKRLMREVRTPEMR----ESLTPRETEILKLLAQGHSNKHIA 172 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + TV A++ S KL +R QA A++ G + Sbjct: 173 RETKVEERTVKAHVSSILAKLGLSSRTQAALFALKEGLV 211 >gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 246 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 6/223 (2%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALD---FPRRQQLICELHNYDLDSGDIPNILIE 70 + + +Q ++ +F + +A + ++ + + + D L + Sbjct: 25 VDDEPGLREAVQAYLEDSDFTVDVAGNAREGWELLQQNLPDLVITDIMMPEVDGYQFLKQ 84 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + + + + + L P + V+ + Sbjct: 85 MREDPLFKALPVVF--LTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVVI-VKNLLERRA 141 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 +S + ++ + +LT RE S L L G Sbjct: 142 VATASSSDGNPDIAALAGQIARIENMLKGKSGITPTPPPIKIDLTPREQSVLDLVAQGLM 201 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++EIA +L SV V Y+ K +R + + A+ G Sbjct: 202 NKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 244 >gi|167463570|ref|ZP_02328659.1| hypothetical protein Plarl_13624 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381266|ref|ZP_08055269.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154842|gb|EFX47113.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 218 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 150 HGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H A +VI +L + A + LT+RE L L GYT++E+A+ L +S TV + Sbjct: 129 HAAAKKVIEGYLQSASHDHTDAFQQLTDREKEILSLVAKGYTNKEVADLLSISAKTVENH 188 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ R I A++ G + Sbjct: 189 KANIMDKLNLNTRRDLIRFAVKRGLL 214 >gi|17228408|ref|NP_484956.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130259|dbj|BAB72870.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 225 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ RE L+L +G ++ EIAEKL LS +TV ++ KL +R+QA A+R G Sbjct: 164 NLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSG 223 Query: 233 YI 234 + Sbjct: 224 LV 225 >gi|315506070|ref|YP_004084957.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412689|gb|ADU10806.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 603 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194 + + ++ V + + A LT RE L+L DG ++ EI Sbjct: 503 GIRTVASGAALLAPEVTRQLVGRYAARIRPAEGTPADVGLTPRELEVLRLIADGLSNSEI 562 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L +S TV Y+ KLD +R+QA+ A R G + Sbjct: 563 AARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTGLV 602 >gi|222151813|ref|YP_002560973.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] gi|222120942|dbj|BAH18277.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] Length = 210 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ +G T++EIAEKL +S TV ++ KL+ +R QA +++ Sbjct: 148 PLSKRELEVLKAMSEGLTNKEIAEKLFVSEKTVKTHVSHIFAKLEVGDRTQASMYGVKYK 207 Query: 233 YI 234 I Sbjct: 208 LI 209 >gi|171320576|ref|ZP_02909599.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171094179|gb|EDT39263.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 243 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 62/230 (26%), Gaps = 21/230 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72 + L A FA + + EL Sbjct: 12 AADWQRALRACVAAFDA--FASPSAIVFYRLDLSGEPADFELFGMPESMHRTYLA-RYRM 68 Query: 73 GDDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVR----------LEGGLLPFAG 117 D +G+ ++ + +E S+ + R L G G Sbjct: 69 LDPLHPSRCAAGIRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRGDAGHTVG 128 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLT 175 +R G F + + + L + + R LT Sbjct: 129 AFSLLRFGQGDAHGNGTAGRFAPGEVDALARLQPVAEAALAPLLRVRRGIHRIGCEERLT 188 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE +L DG +++EIA L L T+ +L KL NR + + Sbjct: 189 YREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 238 >gi|29832624|ref|NP_827258.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609744|dbj|BAC73793.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 215 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 151 GACYQVITDFLELFKKRSSA-------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G V+ ++ L + + A A LT+RET L+L G + ++IAE+L +S Sbjct: 123 GLAGLVLGEYRRLASEPAPATGAGEPRAPQLTDRETEVLRLVAKGLSYKQIAERLVISHR 182 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 183 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 212 >gi|298242057|ref|ZP_06965864.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555111|gb|EFH88975.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ + + + L+ERE L+L G ++ EIA +L +S TV +L Sbjct: 133 RVAARVVRELRGTRSEAPNPFVELSERELEVLRLIAGGLSNTEIAARLTISEKTVKGHLS 192 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL ++R QA A + G I Sbjct: 193 NILSKLHLMDRTQAAVFAWQQGLI 216 >gi|288554158|ref|YP_003426093.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288545318|gb|ADC49201.1| two-component response regulator of extracellular degradative enzyme [Bacillus pseudofirmus OF4] Length = 233 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG ++ I E L +S TV ++ + K+ +R QA+ +AI Sbjct: 166 PLHILTRRECEVLQLMTDGQSNRAIGESLYISEKTVKNHVSNILQKMSVNDRTQAVVEAI 225 Query: 230 RFGYI 234 + GY+ Sbjct: 226 KKGYV 230 >gi|229143361|ref|ZP_04271792.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228640168|gb|EEK96567.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] Length = 213 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIA+ L +S TV ++ KL+ +R QA+ A+R Sbjct: 149 ELTEREKEILFELVKGLSNKEIAKVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|119717167|ref|YP_924132.1| two component LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119537828|gb|ABL82445.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 215 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 51/108 (47%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY+ T+ L V A G T L KRSS A LT+RE + L+L Sbjct: 101 GAAGYLSKTAPGRELVEAVRAVAGGNSVLQPTLMAALLAKRSSPANTLTDRERAVLRLLA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++IA +LG+S TV + KL +R +A+ +AI + Sbjct: 161 EGMHNKQIASRLGISARTVERHCDRIYGKLGVTSRTEAVVRAISANLL 208 >gi|222081960|ref|YP_002541325.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726639|gb|ACM29728.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 244 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 61/218 (27%), Gaps = 17/218 (7%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFP-------RRQQLICELHNYDLDSGDIPNIL 68 ++ + + F ++ N + N+ Sbjct: 27 DIHSLEAVFSKTLSHLGFPMFAYNIHRMSASFIMNESTVDPQNFIISNFPNKWLTHDFHQ 86 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L +G W + I+ + + ++ GI P+ + Sbjct: 87 KYKEIDPTLKWVGTGQGIAQWSDLLTSDDIDKNQRRLLQEAWDAGLTNGITLPIMTELGE 146 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE----------LFKKRSSAARNLTERE 178 + E NE I+ A + + L + L+ RE Sbjct: 147 AVAISVVPEPGTGNNERILAALPIVQILAQGYHRKAKGILLGHSLKVGSARRKSFLSPRE 206 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L G T+ EIAE L +S +V+ Y A KL Sbjct: 207 IDVLHWMARGKTAWEIAEILSISQKSVDFYTDMAKTKL 244 >gi|330860763|emb|CBX71053.1| nitrate/nitrite response regulator protein narP [Yersinia enterocolitica W22703] Length = 236 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + I V +I E+++E + Sbjct: 99 LRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDA 158 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +T +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 159 VTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 218 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A + Sbjct: 219 NVRSRVAATIMYLEN 233 >gi|239934234|ref|ZP_04691187.1| two component LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291442679|ref|ZP_06582069.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291345574|gb|EFE72530.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 44/106 (41%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 NG +LA V G Q + R R L RE LQL +G Sbjct: 121 NGIRTVARGEALLAPAVTRHLIGHFAQHLRPADTSRPARQDVVRALAPRELEVLQLIAEG 180 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA + ++ TV Y+ KLD +R+QA+ A R G + Sbjct: 181 LSNAEIAAAMFITPETVKTYVSRILAKLDLRDRVQAVVLAYRVGLV 226 >gi|229492199|ref|ZP_04386007.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229320825|gb|EEN86638.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 205 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 48/107 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + L + V A G +L + +L+ RE L+L Sbjct: 97 AGASGYLLKDTPPVELLSAVRAAASGDSVLSPAIASKLMTRVRKPETSLSPREIEVLKLV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G ++ EI ++L LS TV ++L KL +R A+A+A G Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARARELG 203 >gi|254522679|ref|ZP_05134734.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720270|gb|EED38795.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 201 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 126 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 185 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 186 RDRTRAVLKAFELQLV 201 >gi|190573276|ref|YP_001971121.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011198|emb|CAQ44808.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 213 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT+RET L+L G++++EIA LG++ T+ ++ + KL Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KA + Sbjct: 198 RDRTRAVLKAFELQLV 213 >gi|317129844|ref|YP_004096126.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474792|gb|ADU31395.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 74 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + LT+RE +L T++EIA +L +S TV ++ + KL R Sbjct: 1 MKEHEFRPKPLLTKREREVFELLVQDKTTKEIAAELFISEKTVRNHISNTMQKLGVKGRS 60 Query: 223 QAIAKAIRFG 232 QA+ + +R G Sbjct: 61 QAVIELVRLG 70 >gi|251793298|ref|YP_003008026.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter aphrophilus NJ8700] gi|247534693|gb|ACS97939.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter aphrophilus NJ8700] Length = 209 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V +I + ++ Q Sbjct: 72 LRAEGVDARIVILTVSDAKSDIFTLIDAGADGYLLKDTEPDTLLSQLKRIAQGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + +LT+RE L+L G ++++IA +L +S TV ++ + KL Sbjct: 132 IKNLLIERQSSQEPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A Sbjct: 192 NVHSRVAATVLYFEH 206 >gi|123441494|ref|YP_001005480.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088455|emb|CAL11247.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 209 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + I V +I E+++E + Sbjct: 72 LRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDA 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +T +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 132 VTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A + Sbjct: 192 NVRSRVAATIMYLEN 206 >gi|294811706|ref|ZP_06770349.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324305|gb|EFG05948.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 253 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + +LT+RE L+L G ++ EIA L +S TV ++G Sbjct: 164 RLLDKYAGHLPSGEEPVPDTLNSLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 223 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A G + Sbjct: 224 HVLTKLGLRDRVQAAVYAYESGLV 247 >gi|318606649|emb|CBY28147.1| nitrate/nitrite response regulator protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 236 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + I V +I E+++E + Sbjct: 99 LRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDA 158 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +T +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 159 VTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 218 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A + Sbjct: 219 NVRSRVAATIMYLEN 233 >gi|317054459|ref|YP_004118484.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] gi|316952454|gb|ADU71928.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 243 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 8/192 (4%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 + + ++ + D Y D + + S W + + + Sbjct: 43 DMIFISDFPDEISDNYLNNKYQYVDPVIINALSRFTHFSWDENL-KINSMWTVKRIFEKI 101 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLEL 163 G AF + + ++F TS+ + N+ E G L + Sbjct: 102 KSHNIIRGHAFVLHENNNNLAMLLFYIDKFLTSDIDDVFNKNRDELQGVLIDTHEMLLSV 161 Query: 164 -FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + RE+ L GYT ++AE L ++V T+ ++G K+ N Sbjct: 162 YSEGEEVKEDVFSARESEILYWCSKGYTYSQVAEMLNITVSTIKFHMGKVVKKMGVKNAK 221 Query: 223 QAIAKAIRFGYI 234 AI+ I I Sbjct: 222 HAISLGIELKMI 233 >gi|229161240|ref|ZP_04289227.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622336|gb|EEK79175.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 211 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 39/82 (47%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + K++ + LT+RE L+ G +++EIA L ++ TV ++ Sbjct: 127 HPKVTPALLGRPAVKKEKENPFAMLTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRF 231 + KL+ +R QA A++ Sbjct: 187 SNVLAKLEVDDRTQAALYAVKH 208 >gi|27381525|ref|NP_773054.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354693|dbj|BAC51679.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 62/226 (27%), Gaps = 15/226 (6%) Query: 6 LTGKKSSSLQEL-SPRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGD 63 + ++ +L L + ++A A + + +F N D + Sbjct: 20 VRLQRMDPGADLRQSILPDLLRLLRADFVASYVWRSESANFQHG-----VSLNMDPQNLK 74 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + + D + + + GI V Sbjct: 75 RYDDW-FQFHDPMTAKLRLRRRASFVEEVL-SRRDMIRTEFYNDFLARDGLHHGINMYVF 132 Query: 124 LGFHKNG--YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 G G + + + I G + L + +LT RE+ Sbjct: 133 DGDRDLGDFRIWRAAGRPDFESREIDLLTGLEPFLRGAMLRGMHR----YEDLTARESDV 188 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L G T +I+ L + TV ++ +A K NR + A Sbjct: 189 ANLVARGCTDRDISRLLNIGFATVRTHINNAMRKRCCANRAELAAL 234 >gi|302533532|ref|ZP_07285874.1| two-component system response regulator [Streptomyces sp. C] gi|302442427|gb|EFL14243.1| two-component system response regulator [Streptomyces sp. C] Length = 223 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEQSLPDTLG 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|295130489|ref|YP_003581152.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|291375667|gb|ADD99521.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313772396|gb|EFS38362.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313809915|gb|EFS47636.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313830246|gb|EFS67960.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834047|gb|EFS71761.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314973252|gb|EFT17348.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314975927|gb|EFT20022.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984055|gb|EFT28147.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315096164|gb|EFT68140.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|327326081|gb|EGE67871.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327446037|gb|EGE92691.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327447984|gb|EGE94638.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|328760418|gb|EGF73986.1| two-component system response regulator [Propionibacterium acnes HL099PA1] Length = 237 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|88809905|ref|ZP_01125411.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH 7805] gi|88786289|gb|EAR17450.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH 7805] Length = 97 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S +L+ RE ++L +G T++EIAE+L +S TV+ ++ + K + NR+ Sbjct: 10 EGTGSMNASLSARELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVAL 69 Query: 225 IAKAIRFGYIC 235 + A+ G IC Sbjct: 70 LNWAMDHGKIC 80 >gi|294630527|ref|ZP_06709087.1| two-component system response regulator [Streptomyces sp. e14] gi|292833860|gb|EFF92209.1| two-component system response regulator [Streptomyces sp. e14] Length = 206 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARN 173 L +G+V+ +A V I A G A + + L + Sbjct: 80 VTAALSAGASGFVLKRRPVRQIAEAVRIVAAGETILFPAALRQMVTARPLSSAEALPKAA 139 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L+L G ++ EIA L +S+ TV ++G+ KL A NR A+ A G Sbjct: 140 LTEREEAVLRLMATGQSNPEIARALTVSLETVKTHVGNVLSKLGAQNRTHAVVIAYESGL 199 Query: 234 I 234 + Sbjct: 200 V 200 >gi|21220598|ref|NP_626377.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|5689930|emb|CAB51968.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] Length = 215 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G V+ ++ L + + AA LT+RET L+L G + ++IAE+L +S Sbjct: 123 GLAGLVLGEYRRLASEPAPAAGTDDPGAPRLTDRETEVLRLVAKGLSYKQIAERLVISHR 182 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 183 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 212 >gi|325964863|ref|YP_004242769.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470950|gb|ADX74635.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 217 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + V+ A G L + S+ +LT RE L+L Sbjct: 104 AGASGYMLKDAPPEQIRQAVLAAAAGETVLAPRAAALLMNRISNPGTSLTPREVQLLELL 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA+++ +S TV +L KL NR AIA A + I Sbjct: 164 ATGLSNRAIAKQVFISEATVKTHLVHIYGKLGVDNRTAAIAAATQRRII 212 >gi|228989393|ref|ZP_04149382.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] gi|228770340|gb|EEM18915.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] Length = 216 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+ Sbjct: 151 EQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRY 210 Query: 232 GY 233 G Sbjct: 211 GI 212 >gi|115371976|ref|ZP_01459288.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115370941|gb|EAU69864.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 209 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL--------MLANEVIIEAHGACYQV 156 + + +R G I + I H V Sbjct: 70 LRAIRREFPDARILVLTLRQGDEDVHQAIQAGARGYLLKGATGPEILDAIRAVHRGLRHV 129 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + +R + LTERE L+ G ++++IA++L ++ TV A++ KL Sbjct: 130 APEAAAMLVERVGDS-PLTERERQTLEAMARGRSNKQIAQELSITEATVKAHVTQILSKL 188 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+ +A+R G I Sbjct: 189 GVDDRTQAVTRALRRGLI 206 >gi|58613938|gb|AAW79571.1| transcriptional activator [Pseudomonas fluorescens] Length = 234 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 8/209 (3%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + L L+ + A A + ++ ++ N + D + D Sbjct: 32 AEVLKLVTELVDADYAASFVWDAQRKKSTQR----VAVNISDATLDSYDQ-YFCQIDHVT 86 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + + ++ + + V + GI G + Sbjct: 87 PALRACVSATNVDNVIARPQLL-GSEFYVDFLKPAGMYHGINIYFFDKGVDVGDLRIWRG 145 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + E F+ + L+ RE +L +G + +E+A + Sbjct: 146 AGGQSFTLREERILNSLSPY--FVRSLSPTLHPVQGLSGREADVARLVANGASDKEVARQ 203 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LG++ TV +L +A KLD VNR Q Sbjct: 204 LGIAFTTVRTHLNNAMCKLDCVNRTQLAR 232 >gi|302038025|ref|YP_003798347.1| putative LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300606089|emb|CBK42422.1| putative Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 235 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LTERE ++L +G ++++IA++L +S TV +L S KL NR + + +A + Sbjct: 166 SDGLTEREREVVRLISEGLSNKDIADRLCISSITVRHHLTSIFDKLGVSNRQKLLIRAHQ 225 Query: 231 FGYI 234 G + Sbjct: 226 QGLV 229 >gi|296140566|ref|YP_003647809.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028700|gb|ADG79470.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 218 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + ++R + A LT RE L+ G ++ EIAE L +S TV ++ Sbjct: 135 IAEVTAARSRRRPAPAELGTLTPREREVLEAVAAGRSNAEIAETLFVSEQTVKTHVSKVL 194 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL +R QA+ A G + Sbjct: 195 QKLGLRDRAQAVVYAYETGVV 215 >gi|1429258|emb|CAA67717.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 218 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAE 196 A I ++I++ ++ + A T+RE LQ G +E+IAE Sbjct: 120 RAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAE 179 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KL +S TV ++ K +A +R QA+ AIR G + Sbjct: 180 KLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|188586689|ref|YP_001918234.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351376|gb|ACB85646.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 212 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 161 LELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L + ++ + +A NLT RE L+L G G+T++EIA++L + + TV ++ + KL+ Sbjct: 137 LMMERRENESAYLNLTNREKEVLRLLGKGFTNQEIADELYIGIKTVKTHVSNILDKLELK 196 Query: 220 NRIQAIAKAIRFGY 233 +R QA A +GY Sbjct: 197 DRTQAAIYAKDYGY 210 >gi|157371727|ref|YP_001479716.1| two component LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157323491|gb|ABV42588.1| two component transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 210 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + I V +I E ++E A + Sbjct: 73 LRNEGVDARIIVLTVSDSRSDVYALIDAGADGYLLKDSEPEQLLEHIRAAAEGKNVISDA 132 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D+L ++ LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 133 VADYLSSRSEQHDPFAELTERELDVLQEVARGLSNKQVAAQLHISEETVKVHIRNMLRKL 192 Query: 217 DAVNRIQAIAKAIRF 231 D +R+ A + Sbjct: 193 DVRSRVAATVMYLEH 207 >gi|322374953|ref|ZP_08049467.1| DNA-binding response regulator [Streptococcus sp. C300] gi|321280453|gb|EFX57492.1| DNA-binding response regulator [Streptococcus sp. C300] Length = 199 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 5/155 (3%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----L 139 P+ + E +++ ++ + L + + Sbjct: 45 EPVDIAILDVEMPVKTGLEVLEWIRAEKLETKVVVVTTFKRPGYFERAVKAGVDAYVLKE 104 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +++ H EL + + LTE+E + L+ G +++EIA++L Sbjct: 105 RSIADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLY 164 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV Y+ + KLDA NR +A A G++ Sbjct: 165 LSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|319939666|ref|ZP_08014025.1| response regulator [Streptococcus anginosus 1_2_62CV] gi|319811255|gb|EFW07561.1| response regulator [Streptococcus anginosus 1_2_62CV] Length = 210 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|297155058|gb|ADI04770.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-------ARNLTE 176 L +G+++ + +A+ + + A G L R LT Sbjct: 99 LRAGADGFILKRTPSQAIAHAIRLVATGDSVLFPDAVRRLVAARPLPPVGPAAGHAPLTA 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET L+L G ++ +IA +L +S+ TV ++ + KL A NR QA+ A G + Sbjct: 159 RETEILRLMATGLSNPDIAGRLTVSLETVKTHVSNLLTKLGAQNRTQAVILAYESGLV 216 >gi|229009717|ref|ZP_04166941.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] gi|228751597|gb|EEM01399.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] Length = 214 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R Sbjct: 139 AVECNPPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDR 198 Query: 222 IQAIAKAIRFG 232 QA A+R+G Sbjct: 199 TQAAIYAVRYG 209 >gi|254362590|ref|ZP_04978686.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica PHL213] gi|261491662|ref|ZP_05988244.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494219|ref|ZP_05990719.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094197|gb|EDN75082.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica PHL213] gi|261310122|gb|EEY11325.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312677|gb|EEY13798.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 209 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 11/134 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V ++ +++ Sbjct: 69 LRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVDGYLLKDTDTPELLDNIRKAAAGEVVL 128 Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + L + + LT+RE LQ G ++++IA +L +S TV ++ + Sbjct: 129 SETVRQHLLNRQPENDPLSCLTDRELDVLQWLATGMSNKQIAAQLFISEETVKVHIRNLL 188 Query: 214 VKLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 189 RKLNVHSRVAATVL 202 >gi|295839399|ref|ZP_06826332.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295827445|gb|EDY46841.2| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 226 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 34/232 (14%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + ++A FA+ R+ D + L Sbjct: 13 VDDHPMWRDAVARDLEAAGFAVVATAGDGPQAVRRASAAL-----PDVLVLDLNLPGL-- 65 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + V + + V+ G Sbjct: 66 -PGVEVCKRLVR--------------ERSGPHVLVLSASGEHQDVLEAVKSGATGYLLKS 110 Query: 134 FTSEFL--MLANEVIIEAHG---ACYQVITDFLELFKKRSSAA-------RNLTERETSC 181 ++E L + + EA V+ ++ L + + A LT+RET Sbjct: 111 ASTEELIDAVRRTALGEAVFTPGLAGLVLGEYRRLAAESAPKAAGARPGTPRLTDRETEV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 171 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 222 >gi|223041846|ref|ZP_03612034.1| nitrate/nitrite response regulator protein [Actinobacillus minor 202] gi|223017339|gb|EEF15762.1| nitrate/nitrite response regulator protein [Actinobacillus minor 202] Length = 209 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 13/141 (9%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + + V ++ ++E + Sbjct: 69 LRALRAKDVDARIVVLTVSDEQSDIVALMDAGVDGYLLKDSDTAELVENIQKAARGETVL 128 Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + L + ++ LT+RE LQ G ++++IA +L +S TV ++ + Sbjct: 129 SDAVRKHLLEHRPQADPLATLTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLL 188 Query: 214 VKLDAVNRIQAIA--KAIRFG 232 KL+ +R+ A A + G Sbjct: 189 RKLNVHSRVAATVLYLAQQKG 209 >gi|218294966|ref|ZP_03495820.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218244874|gb|EED11398.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 217 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A EV+++A ++I DF ++ L+ERE L+L GYT+ EIA + Sbjct: 116 RRVHAGEVLLDAE-LAGRIIQDFRARKEQSLPLHAELSEREIQILKLVAQGYTNLEIAAE 174 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L LS TV L KL NR QA AIR G Sbjct: 175 LQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210 >gi|163847477|ref|YP_001635521.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222525329|ref|YP_002569800.1| LuxR family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668766|gb|ABY35132.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449208|gb|ACM53474.1| transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 487 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE L+L G T+++IA L +SV+TV +L + K+ +R +A AIR G + Sbjct: 8 SEREREILRLVATGATNQQIAIALNISVNTVKVHLRNIFAKIGVESRTEATVYAIRNGIV 67 >gi|119485367|ref|ZP_01619695.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119457123|gb|EAW38249.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 250 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EI+EKL ++V TV ++ S KL +R QA +A+R G Sbjct: 188 PLTERELEVLELIVGGCSNAEISEKLYVTVGTVKTHVRSILNKLCVEDRTQAAVRALRSG 247 Query: 233 YI 234 + Sbjct: 248 LV 249 >gi|37523606|ref|NP_926983.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214611|dbj|BAC91978.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 90 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 41/65 (63%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +L++RE L+L G+T+E+IAE L +S TV+ ++ + K NR++ + A++ Sbjct: 8 SESLSDREMQILELVAQGHTNEDIAEVLEISKRTVDNHVSNILQKTKTKNRVELVRWALQ 67 Query: 231 FGYIC 235 +G +C Sbjct: 68 WGKVC 72 >gi|158314991|ref|YP_001507499.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110396|gb|ABW12593.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 223 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 4/126 (3%) Query: 113 LPFAGIA-FPVRLGFHKN---GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 AG + F ++ +L + D R Sbjct: 93 GLRAGASGFLLKDAAPGELVNAIRTVARGDAVLGPTAARRLVDRFAALPADSGSDRAARP 152 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LTERE L GY++ EIA +L LS HTV ++G KLD +RIQA+ A Sbjct: 153 EIVHDLTEREREVFLLVARGYSNREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLA 212 Query: 229 IRFGYI 234 G + Sbjct: 213 YESGLV 218 >gi|323494233|ref|ZP_08099345.1| two component LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323311396|gb|EGA64548.1| two component LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 209 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 C Q LE L +K L++RE+ L+ +G ++EIA+ L +SV TV + Sbjct: 124 YLCPQASDRLLEQLNEKPQPKDDTLSKRESDVLKEIVNGSGNKEIADSLHISVRTVETHR 183 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL A + + A++ G + Sbjct: 184 LRIKKKLGATSTAALVKLALQKGLV 208 >gi|296130675|ref|YP_003637925.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022490|gb|ADG75726.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 226 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 4/104 (3%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERETSCLQLAGDGYT 190 ++ + + + R LT RE L+L +G + Sbjct: 120 AGTSVVAPRVLRRMLDLFAPHLPAGAEDGDPQERTGPHPRLRGLTPRELDVLRLIAEGAS 179 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA +L +S TV ++G+ KL A +R+QA+ A G + Sbjct: 180 NAEIAAELVVSETTVKTHVGNVFAKLGARDRVQAVIIAYECGVV 223 >gi|319944660|ref|ZP_08018927.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] gi|319742099|gb|EFV94519.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] Length = 233 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + +LT RE +Q G +++EIA +L ++ TV ++ + KL+ +R Sbjct: 157 SIQSGTTPERVHLTAREREIMQCLARGESNKEIARRLDVAESTVKIHVQNILKKLNLSSR 216 Query: 222 IQAIAKAIRFGY 233 +Q A+ G Sbjct: 217 VQIAVYAVENGL 228 >gi|315648982|ref|ZP_07902076.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315275663|gb|EFU39017.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 217 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L +G +++EI E+L +S+ TV ++ + +K + +R Q A R G Sbjct: 154 GLTEREKEVLLLIAEGRSNKEIGEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKG 213 Query: 233 YI 234 ++ Sbjct: 214 WV 215 >gi|311900005|dbj|BAJ32413.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 223 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ L + + A GA + L + A Sbjct: 97 LRAGASGFLLKDVPAEELVQAIRVVADGAAMLAPSVTRRLLDMYATKLPSGDEAPPQALT 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L +S TV ++G KL +R+QA A G Sbjct: 157 VLTEREVEVLRLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|296331918|ref|ZP_06874383.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673530|ref|YP_003865202.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150996|gb|EFG91880.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411774|gb|ADM36893.1| two-component response regulator (paired with YfiJ) [Bacillus subtilis subsp. spizizenii str. W23] Length = 220 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++R+G Sbjct: 158 LTEREMEVLAELGYGLNNKEIAEKLFITEGTVKNHVSNIISKLSVRDRTQAAIYSVRYG 216 >gi|226311708|ref|YP_002771602.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094656|dbj|BAH43098.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 215 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 3/104 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 ++ + L +E+ E + + LT RE + G G T Sbjct: 113 WINYLHALLGEDSELTREMATRLMYRFRQEEATDEMVPAV---LTPREREIVMYVGAGKT 169 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EI+E L ++ +TV +L + KL NR+Q A A+R + Sbjct: 170 NREISEALIIAENTVKNHLKNILEKLQLANRVQLAAYAVRHHLV 213 >gi|56964425|ref|YP_176156.1| transcriptional regulator of spore coat protein [Bacillus clausii KSM-K16] gi|56910668|dbj|BAD65195.1| transcriptional regulator of spore coat protein [Bacillus clausii KSM-K16] Length = 74 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE +L T++EIA L +S TV ++ + KL R QA+ + I Sbjct: 8 PKPLLTKREREVFELLVQDQTTKEIANHLFISEKTVRNHISNTMQKLGVKGRSQAVIELI 67 Query: 230 RFG 232 R G Sbjct: 68 RLG 70 >gi|37519948|ref|NP_923325.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210940|dbj|BAC88320.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 212 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 5/110 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVI-----TDFLELFKKRSSAARNLTERETSCLQ 183 G + + + + V +L + LT RE L Sbjct: 100 AGIDGYCVKGIEPEQLLQAILQVRSGHVWWDGRVAAYLRSGPEPERRDYQLTPRERQVLG 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +G ++++I +L +SV TV ++ + KL A +R QA A++ G Sbjct: 160 LLANGLSNQQIGRQLFISVGTVQVHVHTILRKLGARDRTQAAILALQEGL 209 >gi|299535065|ref|ZP_07048391.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] gi|298729561|gb|EFI70110.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] Length = 376 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 75/228 (32%), Gaps = 24/228 (10%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 SS Q+L+ L + + Y P Q + + L Sbjct: 168 SSGYQDLALILKKCEEYFSYKRCVFYAY-----VPWSNQFYGVIGAELPKVQSMKGELTG 222 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLGFHKN 129 S PI +++ + I P+ Sbjct: 223 ENT------ILSSRKPIY---------LKNPKNYVKEEHIQLFNLSSIIFIPILCEDQLF 267 Query: 130 GYVIFT--SEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAG 186 G++ F E E + ++ +K + +LTERE+ L L Sbjct: 268 GWLTFDQLGEEFDCTKEELTLLEEVGKRLGLFLSRKGEKVEKNTVLHLTERESMILGLLA 327 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +GY +++IA L LS HTV Y+ S KL A NR Q +A A R G + Sbjct: 328 EGYDNKKIAGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 375 >gi|302553186|ref|ZP_07305528.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470804|gb|EFL33897.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ + + + + LT+RE + L G ++ Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPMLPGTATQPQHQEL---ERLTDREREVMVLVAQGLSNG 175 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L LS TV ++G KL +R+Q + A G + Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|163848683|ref|YP_001636727.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|163669972|gb|ABY36338.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] Length = 890 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 ++++ S + + G + L + + T + ++ + E Sbjct: 754 LEQKAGNPSVAMNMLGRALEIGKANGY-VRIFLEEGEEMRHLLTQIHRLRRDDFVAELLA 812 Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A + +SS LTERE L+L +G ++ EIAEKL LSV TV ++ Sbjct: 813 AFGKPAQVV------QSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKH 866 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R++A A G + Sbjct: 867 IYGKLNVDDRVKAAGMARELGLL 889 >gi|152966552|ref|YP_001362336.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151361069|gb|ABS04072.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 211 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +R+ LT RE L+L DG ++ EIA L LS TV Y+ KLD +R+QA Sbjct: 141 PQRAQEGSALTPRELQVLRLIADGLSNVEIAATLSLSPETVKTYVSRLLTKLDLRDRVQA 200 Query: 225 IAKAIRFGYI 234 + A R G + Sbjct: 201 VVYAYRHGLV 210 >gi|291440146|ref|ZP_06579536.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343041|gb|EFE69997.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 201 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 8/91 (8%) Query: 151 GACYQVITDFLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 G V+ ++ L + + A+ LTERET L+L G + ++IAE+L +S Sbjct: 108 GLAGLVLGEYRRLASEPAGPAQGDDGSKAPRLTERETEVLRLVAKGLSYKQIAERLVISH 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 168 RTVQNHVQNTLGKLQLHNRVELVRYAIERGL 198 >gi|293364262|ref|ZP_06610988.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307702507|ref|ZP_07639461.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|291317108|gb|EFE57535.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623919|gb|EFO02902.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] Length = 199 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 5/155 (3%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----L 139 P+ + E +++ ++ + L + + Sbjct: 45 EPVDIAILDVEMPVKTGLEVLEWIRAEKLETKVVVVTTFKRPGYFERAVKAGVDAYVLKE 104 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +++ H EL + + LTE+E + L+ G +++EIA++L Sbjct: 105 RSIADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLY 164 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV Y+ + KLDA NR +A A G++ Sbjct: 165 LSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|260777662|ref|ZP_05886555.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605675|gb|EEX31960.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus ATCC BAA-450] Length = 210 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 11/138 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156 L + V ++ + ++E + Q Sbjct: 68 LNALRADECDATIVILTVSDSPGDIEAIVKAGADGYLLKDTEPDELVELLKSSLQGNKAY 127 Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + +L + S +LT+RE L+ GY +++IA+ L +S TV ++ S Sbjct: 128 SKEVAKYLAERENISDVFDDLTDREMQILREVAKGYRNKQIADSLFISESTVKVHMKSLL 187 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL +R A + Sbjct: 188 KKLKVPSRTAATVLYLER 205 >gi|182415045|ref|YP_001820111.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842259|gb|ACB76511.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 12/152 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + S Q L + + + I + E+ ++ Sbjct: 58 LDLRMQGMSGVQTLHALRAEFGAVRVLVYSNYARGEEVYQAIKAGAAGFVVKEMALDRLL 117 Query: 152 ACYQVITD---------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V+ + ++ + L+ RE L+L G +++EIA +LGL V Sbjct: 118 EAIRVVNSGGQYIPEQVAARIAERLLA---GLSPREMEVLKLLAKGLSNKEIATQLGLVV 174 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KL +R QA+ A++ G I Sbjct: 175 GTIKIYVANIFNKLGVSDRTQALVTAVKRGII 206 >gi|322386960|ref|ZP_08060584.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321269242|gb|EFX52178.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 210 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|298250780|ref|ZP_06974584.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548784|gb|EFH82651.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 34/74 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 R + L+ RE L+L +G ++ +IAE+L L+ TV ++ + KL N Sbjct: 150 RSATPARPAQEETLSPREIEILKLLAEGASNRKIAEQLVLAEGTVKNHVSNILSKLHTGN 209 Query: 221 RIQAIAKAIRFGYI 234 R QA A + Sbjct: 210 RTQAAHLARERKLL 223 >gi|254385060|ref|ZP_05000394.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343939|gb|EDX24905.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 224 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEDSVPNTLG 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|121053812|gb|ABM47010.1| response regulator [Amycolatopsis orientalis] Length = 222 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 155 QVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ L + NLT+RE L L G++++EIA +L +S TV +++ Sbjct: 138 RVLGAALTSAPASAPPPEDDANLTKREAHVLTLIAAGHSNKEIAAELFVSETTVKSHINR 197 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 K + +R QA+ A + GY+ Sbjct: 198 IFAKTGSRDRAQAVRYAYQAGYV 220 >gi|83955493|ref|ZP_00964124.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83840137|gb|EAP79312.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] Length = 220 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + +A +LTERE + L G +++E+A+ L +SV TV + + KL + Sbjct: 144 EPKDAARESLTEREQTILLQLAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGL 203 Query: 225 IAKAIRFGYI 234 A+ G + Sbjct: 204 TRYAMEHGVL 213 >gi|186680836|ref|YP_001864032.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463288|gb|ACC79089.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 224 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G +++EIAE L ++ TV ++ + KL+ +R QA AI+ G Sbjct: 156 PLTKREQEILALVAAGKSNQEIAEILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAIQKG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|322418556|ref|YP_004197779.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320124943|gb|ADW12503.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 224 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L +G +S IAE L +S TV + + KLD +RI+ + A R G Sbjct: 158 LSPREQQVMRLVAEGGSSRSIAEALQVSAKTVENHRTNLMKKLDVHSRIELVRYAARLGL 217 Query: 234 I 234 I Sbjct: 218 I 218 >gi|256390165|ref|YP_003111729.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356391|gb|ACU69888.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 221 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LT RE L L G ++ EIA +L +S HTV ++ + +KL +R+ A+ Sbjct: 148 PSARLDALTPRERETLLLMARGASNAEIAARLFVSEHTVKTHVSNILMKLGLRDRVHAVI 207 Query: 227 KAIRFGYI 234 A G + Sbjct: 208 FAYDSGLV 215 >gi|90739296|gb|ABD97851.1| AvsR [Agrobacterium vitis] Length = 246 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 12/234 (5%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + ++S + + L+ +Q+ + + + + + Sbjct: 13 WLETATSAK-WTDFLNRLQSSYNLSGCLYMDAFITSAGAQVHRYGHTFDKQVKEPILMLD 71 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + L + + P+ + V E L +L LP +++P+ Sbjct: 72 APVLHN---VLSQLSRAMEPVDMHDL--AHVSEEGLLLRSKLRDLPLPRQAVSYPLLSID 126 Query: 127 HKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFL-ELFKKRSSAARNLTERETS 180 + + S + H + + + LT RE Sbjct: 127 GRGAILAIASNACEQEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGADIAGTPPLTRREQE 186 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G + E A LG+S TV ++ +A +KLDAV+ QA+ KA++ G I Sbjct: 187 TLRWTAAGKSYWETAVILGISERTVRYFMANARIKLDAVSNTQAVVKALQRGLI 240 >gi|332162558|ref|YP_004299135.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666788|gb|ADZ43432.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 202 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + I V +I E+++E + Sbjct: 65 LRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDA 124 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +T +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 125 VTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 184 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A + Sbjct: 185 NVRSRVAATIMYLEN 199 >gi|320011002|gb|ADW05852.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + LT RE L+L G +++EIA +L L+ TV ++G Sbjct: 138 LIADFARRKPAAPSGGPALRLNGLTPREREVLELIARGLSNQEIAARLVLAEQTVKTHIG 197 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA+ A G + Sbjct: 198 RVLAKLGLRDRAQAVIFAYESGLV 221 >gi|239980581|ref|ZP_04703105.1| two-component system response regulator [Streptomyces albus J1074] gi|291452439|ref|ZP_06591829.1| two-component system response regulator [Streptomyces albus J1074] gi|291355388|gb|EFE82290.1| two-component system response regulator [Streptomyces albus J1074] Length = 228 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183 ++A+ + A G ++IT+F L ++ + LTERET L Sbjct: 110 DASARQLAEGVRVVASGDALLAPGVTRRLITEFSRLAERPQAPGPGQYGELTERETEVLV 169 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA++L ++ TV ++ VKL +R QA A G + Sbjct: 170 QIAQGLSNAEIADRLFVAESTVKTHVSRILVKLSLRDRTQAAVFAYEAGLV 220 >gi|297153818|gb|ADI03530.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 219 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG+++ EIA L +S TV ++ KLD +R+QA+ A R G Sbjct: 157 PLTPRELEVLRLIADGFSNSEIAAALQISPETVKTFVSRILTKLDLRDRVQAVVYAYRQG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|297567827|ref|YP_003686798.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] gi|296852276|gb|ADH65290.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] Length = 206 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L +G +++EIA++LG+S+ TV ++ KL A +R QA KA+R G Sbjct: 145 QLSPRELEVLRLIAEGLSNKEIAQRLGISLSTVKTHIEELLAKLSASDRTQAAIKAVRQG 204 Query: 233 YI 234 + Sbjct: 205 LL 206 >gi|289523038|ref|ZP_06439892.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503581|gb|EFD24745.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 274 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L ++ ++ +LT RE L G++++ IA+ + LS TV ++ KLD +R Sbjct: 187 SLIEEDTAQLYHLTPREKEVLYWLSQGFSNQNIAKIMFLSEKTVKNHVSRILKKLDFPDR 246 Query: 222 IQAIAKAIRFGY 233 QA A + G Sbjct: 247 TQAAVFAWKAGL 258 >gi|256421144|ref|YP_003121797.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256036052|gb|ACU59596.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 210 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ERE ++ +G ++ I+ L +S HTV + + KL+ + I AI Sbjct: 148 QELSEREKEIIKCLAEGMNTKAISSSLYISEHTVKTHRRNIMHKLNVKTSAELIRLAIDK 207 Query: 232 GYI 234 G I Sbjct: 208 GII 210 >gi|212690554|ref|ZP_03298682.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855] gi|212666903|gb|EEB27475.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855] Length = 231 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 C ++ +K+ +LT E L+L G T++EIA + LSV+TV Sbjct: 138 RLQYICTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVMT 197 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL+ N +A A+R G + Sbjct: 198 HRKNIFRKLEVNNVYEATKYALRAGIV 224 >gi|119718601|ref|YP_925566.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119539262|gb|ABL83879.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 1006 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 7/165 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + ++ L + W + + +++ F R+ G + T Sbjct: 841 MKRLDAETLRVRWLAGIDAPPLDALVDTWRDAAVLFEDFGHAYELARVRTALAGILRATG 900 Query: 137 E---FLMLANEVIIEAHGACYQVITDFLE----LFKKRSSAARNLTERETSCLQLAGDGY 189 + L + AH + + D L + S LT RE+ LQL G Sbjct: 901 DLAGGRELGDLARASAHQLGARPLLDELRSIGSAPARTESVPDALTPRESEVLQLVAQGR 960 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA++L +S TV+ ++ + KLDA R +A A A R G I Sbjct: 961 SNGEIAKQLFISAKTVSVHVSNILGKLDASGRTEAAAIARRRGLI 1005 >gi|298249284|ref|ZP_06973088.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547288|gb|EFH81155.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 41/83 (49%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ + ++ L+ERE L+L +G ++ IA++L LS TV +++ Sbjct: 131 HIAARVVQELDGASHPDMASFAQLSEREREVLRLIAEGLSNAAIADRLVLSEKTVKSHVR 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL V+R QA A R G Sbjct: 191 NILGKLHLVDRTQAAIFAWRQGL 213 >gi|51894297|ref|YP_076988.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857986|dbj|BAD42144.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 221 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ K LTERET L+L G ++++IAEKL + TV ++ S KL Sbjct: 144 LSSMAASRPKARPLVEPLTERETEVLRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKL 203 Query: 217 DAVNRIQAIAKAIRFGYI 234 A +R+ AI A + Sbjct: 204 GARDRVHAILLAQELNLV 221 >gi|148654624|ref|YP_001274829.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566734|gb|ABQ88879.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 208 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%) Query: 138 FLMLANEVIIEAHGACYQ--------VITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 E ++EA Q ++ L+ RS + LTERE L+L +G Sbjct: 106 EKDSQPEQLLEAVRGAAQGKAIFEPALMQRILQAQTMRS--SDALTEREGEVLKLLAEGL 163 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EIA +L + TV ++ S KL +R QA A+R G++ Sbjct: 164 TNAEIAARLSVGEETVKTHVASILRKLGLAHRTQAAIYALRHGWV 208 >gi|328881486|emb|CCA54725.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 214 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178 +R G Y + L A + H + L + + LTERE Sbjct: 98 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDSHGGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212 >gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 223 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 39/96 (40%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A +E Q E + + A LT E + G T+++I EKL Sbjct: 119 IERARRTQLEILRLIQQQTQAKAEAAPRPTLADLPLTPAEERVFREVIRGLTNKQIGEKL 178 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV +L + KL NR Q + A GYI Sbjct: 179 FISPRTVQTHLTNILSKLSLENRSQLVRFAYERGYI 214 >gi|226309987|ref|YP_002769881.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092935|dbj|BAH41377.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 218 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L G++++EIAE+L +SV TV ++ KL R + AI+ Sbjct: 153 DILTDREKEVLVLIAKGFSNKEIAEQLTVSVKTVESHKAHIMEKLHLRTRPDLVRYAIKK 212 Query: 232 GYI 234 G++ Sbjct: 213 GWL 215 >gi|255598987|ref|XP_002537125.1| conserved hypothetical protein [Ricinus communis] gi|223517394|gb|EEF25258.1| conserved hypothetical protein [Ricinus communis] Length = 277 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 10/114 (8%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----------KRSSAARNLTERETS 180 V+F + + + +++ R+ + L++RE Sbjct: 160 MVMFGRLSSPVNAQTAHLLELLMPHLHCAIVKVTANKCPSVLSTTARNGRIKPLSKRELE 219 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G T+ EI + +S T+ ++ + KLD NR QA +KA++ G I Sbjct: 220 VLEWLQAGKTNWEIGNIMQVSPLTIKNHVQNILRKLDVENRSQAASKALKLGLI 273 >gi|313837084|gb|EFS74798.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314927887|gb|EFS91718.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971857|gb|EFT15955.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907346|gb|EGG27112.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 210 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEELLSAIHRSARGEGALAPAVATRLMARMRSPQTSLTARELDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IA+ L +S TV +L KL +R A+AKA G I Sbjct: 161 AGGLSNAQIAQSLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGLI 209 >gi|313679613|ref|YP_004057352.1| two component LuxR family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152328|gb|ADR36179.1| two component transcriptional regulator, LuxR family [Oceanithermus profundus DSM 14977] Length = 219 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 46/96 (47%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + EV+++A A + + + +LT+RE L+L G T++EIA++ Sbjct: 119 RRVNEGEVLLDAELAEQIIHDFRAKRDVLPQAHHADLTDREVQILRLLAQGATNQEIADE 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LG+S TV L KL NR QA AIR G Sbjct: 179 LGISEKTVRNRLSEIFSKLHLNNRTQAALYAIREGL 214 >gi|262282221|ref|ZP_06059990.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262262675|gb|EEY81372.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 210 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 142 HDDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 Query: 231 FGYI 234 + Sbjct: 202 HHLV 205 >gi|229055057|ref|ZP_04195489.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] gi|228721329|gb|EEL72853.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] Length = 214 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R Sbjct: 139 AVECNPPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDR 198 Query: 222 IQAIAKAIRFG 232 QA A+R+G Sbjct: 199 TQAAIYAVRYG 209 >gi|221067422|ref|ZP_03543527.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220712445|gb|EED67813.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 254 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G + EI + + +S TV+ ++ + K+ R QA+ A+ Sbjct: 192 EKLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLK 251 Query: 232 GYI 234 G I Sbjct: 252 GII 254 >gi|255532850|ref|YP_003093222.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345834|gb|ACU05160.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 206 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQ--VITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAE 196 E ++EA A + V R A L T RE L L +G T+ EIAE Sbjct: 109 ATKEELLEAINAVSKGKVYYSQEAFSSLRIPAPDQLLITRREKEVLLLIAEGLTNAEIAE 168 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KL +S+ TVN + S K + N I KAI+ G I Sbjct: 169 KLFISIPTVNTHRKSLIEKFNVKNTAMLIGKAIKLGLI 206 >gi|229131218|ref|ZP_04260124.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] gi|228652209|gb|EEL08140.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] Length = 214 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R Sbjct: 139 AVECNPPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDR 198 Query: 222 IQAIAKAIRFG 232 QA A+R+G Sbjct: 199 TQAAIYAVRYG 209 >gi|88706284|ref|ZP_01103990.1| two-component system response regulator [Congregibacter litoralis KT71] gi|88699435|gb|EAQ96548.1| two-component system response regulator [Congregibacter litoralis KT71] Length = 222 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 7/150 (4%) Query: 92 IQEETVIESSGQLSVRLEG-----GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 + + ++ + ++ F G+ P L L A +++ Sbjct: 70 LDVSMPLAGGAEIIHDVRRWSPDTRIVIFTGVTSPSVLAGILEAGADAIFSKLSPARDML 129 Query: 147 IEA--HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + + + L ++ LT RE L + G +++EIA++L +S T Sbjct: 130 AKLPLILMGERYVAPELTDIIRKGQQGETLTGRERQVLNMIVMGKSNKEIAQELNISPKT 189 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V + GS +KL+ + Q +A+A++ G I Sbjct: 190 VEKHRGSVMLKLEVHSVAQLMARALKDGLI 219 >gi|282863833|ref|ZP_06272891.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561534|gb|EFB67078.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 219 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTS 191 + + A +++ V + +A LT RE L+L DG ++ Sbjct: 116 LLQGIRTVAAGAALLDPEVTRQLVGRYAARIRPTGDAARDIPLTPRELEVLRLIADGLSN 175 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L +S TV ++ KL +R+QA+ A R G + Sbjct: 176 NEIAAALVISRETVKTFVSRILTKLGLRDRVQAVIYAYRQGLV 218 >gi|260914572|ref|ZP_05921040.1| nitrate/nitrite response regulator protein NarL [Pasteurella dagmatis ATCC 43325] gi|260631363|gb|EEX49546.1| nitrate/nitrite response regulator protein NarL [Pasteurella dagmatis ATCC 43325] Length = 209 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I + ++ Q Sbjct: 72 LRSEGIDARILILTVSDSKNDIFTLIDAGADGYLLKDTEPDTLLGQIKRISQGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + + +LT+RE L+L G ++++IA +L +S TV ++ + KL Sbjct: 132 IKNALIERQSATDPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A Sbjct: 192 NVHSRVAATVLYFEH 206 >gi|154251588|ref|YP_001412412.1| two component LuxR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155538|gb|ABS62755.1| two component transcriptional regulator, LuxR family [Parvibaculum lavamentivorans DS-1] Length = 213 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 +GYV+ ++ L V + + L + S LT R Sbjct: 96 TNAGASGYVLKSASKEDLLRAVRAVHAGGGYLQAEVTKPLLRRLAQDARTSGQKATLTSR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ DG +++ IA+ L ++ TV A+L S KL A +R A+A ++R I Sbjct: 156 ELQVLECLADGQSNKMIAQTLSITEDTVKAHLKSLYEKLGASDRAHAVAISLRQQLI 212 >gi|254417388|ref|ZP_05031130.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420] gi|196175823|gb|EDX70845.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420] Length = 94 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 41/73 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +S + +L++RE + L G T++EIA+ L +S TV+ ++ + K NR+ Sbjct: 1 MAGGKSDKSVSLSDRELQIVDLVAAGLTNQEIAQDLEISKRTVDNHISNILQKTHTDNRV 60 Query: 223 QAIAKAIRFGYIC 235 + A+++G +C Sbjct: 61 ALVRWALQWGKVC 73 >gi|302559284|ref|ZP_07311626.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302476902|gb|EFL39995.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|222526625|ref|YP_002571096.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222450504|gb|ACM54770.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus sp. Y-400-fl] Length = 878 Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 ++++ S + + G + L + + T + ++ + E Sbjct: 742 LEQKAGNPSVAMNMLGRALEIGKANGY-VRIFLEEGEEMRHLLTQIHRLRRDDFVAELLA 800 Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A + +SS LTERE L+L +G ++ EIAEKL LSV TV ++ Sbjct: 801 AFGKPAQVV------QSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKH 854 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R++A A G + Sbjct: 855 IYGKLNVDDRVKAAGMARELGLL 877 >gi|315121859|ref|YP_004062348.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495261|gb|ADR51860.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 246 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 16/215 (7%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 R++ + + A +F L + F ++ ++ D + + + L Sbjct: 48 RMYALTEYVGASHFLLVRWDL---FQEQKLDSVVSSDWPFDLVRCMTLSEKDKYYNVLQR 104 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ + E+ S G + + F V G + G ++ + Sbjct: 105 PAELFCPVF------HILPENIDLPS----GMDNRYCALTFDV--GRIRIGLMLLFPKGR 152 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +++ + + E F LT RE CL +G TS+EIA LG Sbjct: 153 IVSQDRLWEIGLLAAYQANMFKNYNVHLGKDFE-LTGREIECLTWISEGKTSDEIAVILG 211 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +T+N Y+ S K R AIA A+R + Sbjct: 212 ISRNTINNYIASIMRKTATKTRSGAIAYAVRNNIV 246 >gi|294085444|ref|YP_003552204.1| LuxR family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665019|gb|ADE40120.1| two component transcriptional regulator, LuxR family [Candidatus Puniceispirillum marinum IMCC1322] Length = 207 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 55/112 (49%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +RLG TS+ L+ A ++ + + +++ K ++ L++RE Sbjct: 95 LRLGAAGFLPYSMTSDALLSALRLMASGEIFIPVSVAEHVQIAKPSTAKDTFLSKREREV 154 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G+++++IAE++GLS T+ +L S KL A NR A +AI G Sbjct: 155 LDGLLSGHSNKQIAERIGLSEVTIKYHLKSLRSKLGARNRTHAALRAIELGI 206 >gi|56964850|ref|YP_176581.1| two-component response regulator of extracellular degradative enzyme [Bacillus clausii KSM-K16] gi|56911093|dbj|BAD65620.1| two-component response regulator of extracellular degradative enzyme [Bacillus clausii KSM-K16] Length = 235 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL DG + I E L +S TV ++ + K++ +R QA+ ++I Sbjct: 168 PLHILTRRECEVLQLMTDGQNNRAIGESLYISEKTVKNHVSNILQKMNVNDRTQAVVESI 227 Query: 230 RFGYI 234 + GY+ Sbjct: 228 KKGYV 232 >gi|239944389|ref|ZP_04696326.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990844|ref|ZP_04711508.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447858|ref|ZP_06587248.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291350805|gb|EFE77709.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARN----LTERETS 180 GY++ + L V A G L + R+ AA L+ RE Sbjct: 103 AGATGYLLKDAPRDELFAAVRAAADGRSTLSPAVASRLMTRVRTPAADPAGTTLSARERE 162 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T+ EIA +L +S TV +L KL A +R A+A G + Sbjct: 163 VLVLVARGTTNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVAVGYDRGIL 216 >gi|119963933|ref|YP_949838.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119950792|gb|ABM09703.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 230 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R LT RET L +G ++ EIA K LS TV ++ KL +R+Q + Sbjct: 155 HRDPLLDELTPRETEILTTIAEGLSNAEIAHKFFLSEATVKTHVRRILSKLQLRDRVQVV 214 Query: 226 AKAIRFGYI 234 A G + Sbjct: 215 VYAYETGLV 223 >gi|322513935|ref|ZP_08067011.1| nitrate/nitrite response regulator protein NarL [Actinobacillus ureae ATCC 25976] gi|322120230|gb|EFX92185.1| nitrate/nitrite response regulator protein NarL [Actinobacillus ureae ATCC 25976] Length = 209 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 11/134 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V ++ ++E + Sbjct: 69 LRSLRTHGVDSRIIVLTVSDEQSDIFALMDAGVDGYLLKDSDTADLVENIRKAAKGEMVL 128 Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + L + + LT+RE LQ G ++++IA +L +S TV ++ + Sbjct: 129 SETVQQHLLDRRPENDPLSVLTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLL 188 Query: 214 VKLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 189 RKLNVHSRVAATVL 202 >gi|271965569|ref|YP_003339765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508744|gb|ACZ87022.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------AARNLTE 176 L +G+++ + + V G + L + LT+ Sbjct: 96 LRAGASGFLLKDAPAEEIVAAVRTVHEGDAVIAPSTTRRLLDHVAPTLPLPADPPVPLTD 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G T+ EIA L LS TV ++G KL +R+QA+ A G I Sbjct: 156 REREVLRHIAQGETNAEIAGCLFLSEGTVKTHVGRILAKLQLRDRVQAVIWAYEHGQI 213 >gi|256394564|ref|YP_003116128.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360790|gb|ACU74287.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 201 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L A+ +LT RE L L G ++ EIA +L +S TV ++ + K+ Sbjct: 126 AILLAAAVEVPASADLTPREAEVLTLIARGKSNTEIAGELFVSAATVKTHINNLFAKIGV 185 Query: 219 VNRIQAIAKAIRFGY 233 +R QA+ A+R G Sbjct: 186 RDRAQAVRYALRRGL 200 >gi|166366585|ref|YP_001658858.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166088958|dbj|BAG03666.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 237 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA++L +++ TV ++ + KL +R QA A+R G Sbjct: 175 PLTAREREILDLIVAGCSNAEIAKRLYITIGTVKTHVRNVLNKLSVDDRTQAAVLALRSG 234 Query: 233 YI 234 + Sbjct: 235 LV 236 >gi|296285195|ref|ZP_06863193.1| LuxR family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 186 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 2/173 (1%) Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + D + ++ W I E + + + + G P Sbjct: 2 VYIAFDLAGQDPVRRACDKTIIGFAWDWIDELVPLTRGDRQMLNVGRECGIGNGYTVPRH 61 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLELF-KKRSSAARNLTERETSC 181 L G F A ++ L L +K +LT+R+ C Sbjct: 62 LPGIGRGTCTFAVRPERELPRRRFAVAEMIGTLALSCALGLSSEKFDEKVPSLTDRQREC 121 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T+ E A L +S TV +L A + + + A+ G I Sbjct: 122 LLWVARGKTAAETAMILEISTETVIQHLKMARERYQVHCKQSLVVAALFDGLI 174 >gi|183601417|ref|ZP_02962787.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241191083|ref|YP_002968477.1| putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196489|ref|YP_002970044.1| putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219023|gb|EDT89664.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249475|gb|ACS46415.1| Putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251043|gb|ACS47982.1| Putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794072|gb|ADG33607.1| Putative response regulator [Bifidobacterium animalis subsp. lactis V9] Length = 226 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LTERE L G +++EIA+KL +S+ TV ++ K++A +R+ Sbjct: 155 AAEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRV 214 Query: 223 QAIAKAIRFGYI 234 QA+ A + Sbjct: 215 QAVVFAYENHLV 226 >gi|169826466|ref|YP_001696624.1| hypothetical protein Bsph_0878 [Lysinibacillus sphaericus C3-41] gi|168990954|gb|ACA38494.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 377 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 + I P+ G++ F E ++ ++ +K Sbjct: 251 FNLSSIIFIPIIQQDQLFGWLTFDQLGEEFDCTKSELLLLEEVGKRLGLFLSRKGEKVEK 310 Query: 170 AAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LTERE+ L L +GY +++I L LS HTV Y+ S KL A NR Q +A A Sbjct: 311 CTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASA 370 Query: 229 IRFGYI 234 R G + Sbjct: 371 FRLGLL 376 >gi|297191947|ref|ZP_06909345.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723328|gb|EDY67236.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181 GY++ + L V A G + + + L+ RE Sbjct: 105 AGATGYLLKDAPREELFTAVRAAAQGRTVLSPAVASRLVSHVRAPAAPGSEGLSAREREV 164 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ IA +L +S TV +L KL A +R A+A A G + Sbjct: 165 LELVAKGTSNRAIARELFISEATVKTHLTHVFGKLGAKDRAAAVALAYERGIL 217 >gi|172037420|ref|YP_001803921.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698874|gb|ACB51855.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 244 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + A + E + L+ ++ + +LT +E L+L Sbjct: 134 PAVARVVLEQMQFDQLSATQSHAEQEVINDTRAIEALDADTQKMVDSSSLTPKELEVLEL 193 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IAE L ++V TV ++ S KL A +R QA +A+R G + Sbjct: 194 IVAGCNNAQIAEALFVTVGTVKTHVRSILNKLCANDRTQAAVRALRSGLV 243 >gi|38233071|ref|NP_938838.1| response regulator [Corynebacterium diphtheriae NCTC 13129] gi|5639947|gb|AAD45905.1|AF161328_2 response regulator CstA [Corynebacterium diphtheriae] gi|38199330|emb|CAE48963.1| Response regulator [Corynebacterium diphtheriae] Length = 233 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G ++ EIAE+L +S+ TV ++ K + +R+ A+ A Sbjct: 160 DPLTPREQEILLLIALGKSNTEIAEELFISLPTVKTHVSKVLSKTGSRDRVHAVLFAFSR 219 Query: 232 GYI 234 G + Sbjct: 220 GLV 222 >gi|116620874|ref|YP_823030.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224036|gb|ABJ82745.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 247 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + R L++RE + L G+ ++E+AEK+ +S TV +L + K Sbjct: 166 AMAAPSQAPPTRERERSPLSQREREIVALVAQGFKNKEMAEKMFISEQTVKNHLHNIFDK 225 Query: 216 LDAVNRIQAIAKAIRFGY 233 L +R++ AI Sbjct: 226 LGVSDRLELALYAIHNNL 243 >gi|320011566|gb|ADW06416.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 214 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178 +R G Y + L A + H + L + + LTERE Sbjct: 98 LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDTGNGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211 >gi|298489796|ref|YP_003719973.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231714|gb|ADI62850.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 218 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L+L +G ++ EIA L +S TV ++ + +L+ +R QA Sbjct: 148 IPPSLVELTPREKQVLRLIANGASNREIAHTLYISEGTVKNHVTNILSRLNLRDRTQAAI 207 Query: 227 KA 228 A Sbjct: 208 LA 209 >gi|311740276|ref|ZP_07714107.1| LuxR family DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304659|gb|EFQ80731.1| LuxR family DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V+ A L ++ +L+ RE L+ Sbjct: 97 AGAMGYLLKDSPEQALHEAVLNTAAHRRTLAPEVVDLLAQRVGRPQESLSTRELEILRAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A++L +S TV +L KL R A+ A I Sbjct: 157 STGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205 >gi|16761903|ref|NP_457520.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143390|ref|NP_806732.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161150|ref|ZP_03346860.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424839|ref|ZP_03357589.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646194|ref|ZP_03376247.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853096|ref|ZP_03382628.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25512537|pir||AE0882 LysR-family transcription regulator STY3293 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504205|emb|CAD02957.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29139024|gb|AAO70592.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 227 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D L Sbjct: 18 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPLLP-- 69 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 70 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215 >gi|330470343|ref|YP_004408086.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813314|gb|AEB47486.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 213 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G L + R+ A L++RE L L Sbjct: 99 AGATGYLLKDAPRDELVRAVRAAARGESVLSPAVAGRLMGRLRAPAEEPLSQRELEVLTL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E A +L +S TV +L KL +R A+A A G + Sbjct: 159 VARGSTNREAAAQLFISEATVKTHLLHVYAKLGVNDRAAAVAVAYDRGLL 208 >gi|257054106|ref|YP_003131938.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256583978|gb|ACU95111.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 21/173 (12%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-------PVRL--GFHKNGYVI 133 P + + + + A + +R G GY+ Sbjct: 48 TRKPCDVVLMDLRMPVLDGVAATREIRNRHPEVAVLVLTTYSDDDSIRDALGAGAQGYLT 107 Query: 134 FTSEFLMLANEVIIEAHGACYQ--VITDFL--ELFKKRSSAARN--------LTERETSC 181 + + + G ++ L L ++R + LT RE Sbjct: 108 KDAGRAEIHAALRAAVTGQATFTTAVSRRLVTALTEQRPRPSEPTPDPSATTLTAREREI 167 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G G ++ EIA +L ++ TV ++ +A K+ NR A+ A + G + Sbjct: 168 LGLIGAGLSNAEIAARLFIAESTVKTHINNAFAKIGVRNRAGAVRYAYQTGLV 220 >gi|116073957|ref|ZP_01471219.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916] gi|116069262|gb|EAU75014.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916] Length = 92 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE ++L +G T++EIAE+L +S TV+ ++ + K + NR+ + A+ G Sbjct: 13 SLSGRELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDHG 72 Query: 233 YIC 235 IC Sbjct: 73 KIC 75 >gi|89894389|ref|YP_517876.1| hypothetical protein DSY1643 [Desulfitobacterium hafniense Y51] gi|89333837|dbj|BAE83432.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 214 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L G ++ EI + L +S TV +L S KL +R QA KA++ Sbjct: 150 GLSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLK 209 Query: 233 YI 234 + Sbjct: 210 LV 211 >gi|259418455|ref|ZP_05742373.1| transcriptional regulatory protein DegU [Silicibacter sp. TrichCH4B] gi|259345850|gb|EEW57694.1| transcriptional regulatory protein DegU [Silicibacter sp. TrichCH4B] Length = 212 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RET+ L L +G ++EI L L+ TV ++ S KL A NR QA+ A Sbjct: 151 PLSDRETTVLNLLAEGKPNKEIGSDLNLAEPTVKMHVKSICTKLGASNRTQAVIVARDLN 210 Query: 233 YI 234 I Sbjct: 211 LI 212 >gi|260575467|ref|ZP_05843466.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] gi|259022387|gb|EEW25684.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] Length = 245 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 68/232 (29%), Gaps = 7/232 (3%) Query: 9 KKSSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ--LICELHNYDLDSGDIP 65 + ++S L L + S + Y + Sbjct: 13 RAATSTDRLWQLGLDALAR-YGVTGICYAVTTSRRAALASDLTEFDFAVFRYPGAPFNEF 71 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + L +W E + E + G+ Sbjct: 72 LQKQGFRNDLTVRRVVQSGLTTVWHDESLWDNAEPEERRRALAEQEMGFRIGVTTTCSFE 131 Query: 126 FHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCL 182 + T + HG Q IT L+ +R LT RE CL Sbjct: 132 PGCVSGIGMTMHQMPAETFTRHWSDHGPKLQAITALLDAQVRRDHLPMLIGLTPREVDCL 191 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++IAE LG+ TV+ Y+ SA KL A R QA+AKA+ I Sbjct: 192 SWLAAGLRPDQIAETLGIGYRTVDKYIVSARGKLRARTRDQAVAKALTLRLI 243 >gi|221133626|ref|ZP_03559931.1| two component LuxR family transcriptional regulator [Glaciecola sp. HTCC2999] Length = 215 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + LT RE L G +S+ IA L +SV TV A+ + KL+ N Sbjct: 141 LASPTNPSNERLTAREQMILSHIATGQSSKAIAHTLDISVRTVEAHRRNIKSKLNIDNLA 200 Query: 223 QAIAKAIRFGYI 234 + + AI G + Sbjct: 201 ELVRYAIEQGLV 212 >gi|311898779|dbj|BAJ31187.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 234 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R S LT+RE L L G ++ EIAE+L +S TV ++ + K +R QA+ Sbjct: 163 RRPSLPDGLTQREAEVLALIAAGLSNAEIAERLFVSPATVKTHINNLFAKTAVRDRAQAV 222 Query: 226 AKAIRFGY 233 A A R G Sbjct: 223 AYAFRHGI 230 >gi|297622974|ref|YP_003704408.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164154|gb|ADI13865.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 386 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAE 196 + EV+ + QV+ +L + + LT RE L G ++ I++ Sbjct: 289 MEAIQEVMSDTAWFSRQVMEKLAQLRSGSVALSGTEALTPREQQVLGRIAKGLSNSAISQ 348 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +LGL+ TV Y+ S KL +R +A+ A G Sbjct: 349 ELGLAPQTVRNYVASIYQKLGVRSRAEAVVWARERGL 385 >gi|256395828|ref|YP_003117392.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362054|gb|ACU75551.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 258 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A LT RET L+L G ++ EIAE+L +S TV +L A KL+ +R QA+ A Sbjct: 184 AALAALTTRETDVLRLVATGLSNGEIAERLVVSEGTVKTHLNRAMAKLNLSSRAQAVVLA 243 Query: 229 IRFGYI 234 G + Sbjct: 244 YESGLV 249 >gi|32472133|ref|NP_865127.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|32397505|emb|CAD72811.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|327539236|gb|EGF25859.1| two-component system response regulator [Rhodopirellula baltica WH47] Length = 210 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE+ L+ G T++EIA+ LG+S TV ++ KL +R QA A+R Sbjct: 149 PLTQRESEVLRQMALGLTNKEIAKMLGISYETVKEHVQHILRKLGVSDRTQAAVWAVRKN 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|256395654|ref|YP_003117218.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361880|gb|ACU75377.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 43/95 (45%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +++A+ + +D S+ +LT RE G T++EIA++L Sbjct: 129 PSTTRRLLDAYADRFTAPSDPPAGASDPSAPLESLTRREREVFDQMVSGLTNKEIAQQLA 188 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV ++ KL +R+QA+ A GYI Sbjct: 189 LSETTVKTHVVRILAKLAVRDRVQAVIYAYETGYI 223 >gi|218514697|ref|ZP_03511537.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 124 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 1/116 (0%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + +G + + E +L+ E + + V FL R LT+RE Sbjct: 10 SLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGARVDRDFELTDRE 68 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 69 LECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 124 >gi|328949883|ref|YP_004367218.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328450207|gb|AEB11108.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 208 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCL 182 GYV ++ L + V+ A ++++ + LTERE + Sbjct: 96 AGGQGYVPKSAVEAELVDAVLAVVRGEYYAPARLLSRVAREMANPHAREAKLTERELEVV 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G T +EIAE LG+S TV Y A KL R + + A+ G + Sbjct: 156 RQIAEGKTYKEIAEHLGISEKTVATYRERAAEKLGLKTRAELVRWALERGLL 207 >gi|313901612|ref|ZP_07835050.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468115|gb|EFR63591.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 272 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 14/130 (10%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE------LF 164 FP+ L GYV+ S L + + G +V++ Sbjct: 140 YIFPI-LEAGAAGYVLKRSAATELVSALRAVVQGHTILHPDVAAKVVSGAARRQKGEGAG 198 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LTERET L L G T++EIA++L +S+ TV A+ + KLD + ++ Sbjct: 199 EGAPRRVDGLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVEL 258 Query: 225 IAKAIRFGYI 234 AIR G I Sbjct: 259 TKYAIRHGLI 268 >gi|301059676|ref|ZP_07200584.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] gi|300446242|gb|EFK10099.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] Length = 219 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V+ +LE + K S +LT+RE L+L +GY ++EIAE L +S TV + Sbjct: 133 ISDKVLEGYLEANRTLKEQSDWDSLTQREREVLKLVAEGYQNKEIAEYLFISPKTVEKHR 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + K D + A AI G + Sbjct: 193 ANIMRKTDLHSASSLTAYAIEKGLL 217 >gi|291571364|dbj|BAI93636.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G +V+ + + ++LT RE L+L G GY++ EIA++L +S TV + Sbjct: 129 GLFEKVMAAKYKPSRDEPLPGYLQDLTPRELEVLRLIGKGYSNREIAQELFISERTVKNH 188 Query: 209 LGSATVKLDAVNRIQAIAKA 228 + S +L+ +R Q A Sbjct: 189 VSSILSRLNLRDRTQVALLA 208 >gi|254477704|ref|ZP_05091090.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11] gi|214031947|gb|EEB72782.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11] Length = 261 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 11/229 (4%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 Q+ R H Q A + +I A + + + D + D Sbjct: 33 QDQQDRWHAAQRA--ADKIGVKSILVAQAVGIQGDIRWMNTDMPSDWIEEYLACGYVEVD 90 Query: 75 DFLFHF--NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 + + G + + + + + + + +V Sbjct: 91 PPVLNLSKQKGNMSVDCGVLHRGDASDKREWDLNHGLKAAGFGSLFCSCYKDATGYDRFV 150 Query: 133 IFT--SEFLMLANEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLA 185 L +E +++ + LT+R+ L L Sbjct: 151 TLAYDGHHLEDQPASQVELQLFSALLVSTIERDTVAPGNGYQPVRPSPLTQRQREVLSLL 210 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G + IAE LGLS V+ + +A L A R A+A A+ G+I Sbjct: 211 AEGMMTARIAETLGLSEAAVSLHFANARKALGASTREHALALALTRGFI 259 >gi|29831078|ref|NP_825712.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608192|dbj|BAC72247.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183 ++A + A G ++I +F L + + LTERET L Sbjct: 109 DASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDTTPRAPLKVRVGELTERETEVLA 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA++L ++ TV ++G VKL +R QA A G + Sbjct: 169 LIAQGMSNAEIADRLVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESGLV 219 >gi|225593182|gb|ACN96099.1| two-component response regulator [Fischerella sp. MV11] Length = 221 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G T++EIAE L ++ TV ++ + KL+ +R QA+ A++ G Sbjct: 159 PLTQREQEILSLIAQGKTNQEIAEALYITTGTVRVHVHTILHKLEVRDRTQAVIVAMQAG 218 Query: 233 YI 234 I Sbjct: 219 LI 220 >gi|302335061|ref|YP_003800268.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Olsenella uli DSM 7084] gi|301318901|gb|ADK67388.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Olsenella uli DSM 7084] Length = 787 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 9/154 (5%) Query: 87 IIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNGYVIFTSEF---LM 140 ++ + + + I G + + Sbjct: 637 VLAAIAAWRSGKDDWRRWIADALDQAKRYGYVRTITL---YGAAVLPLLTEARRHAKEMG 693 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + + + + S A LT+ E L+L ++ EI E LG+ Sbjct: 694 VDEDQLARLVRGARAQASHYPNFMSSPSGPAEPLTKTEGQVLRLICQDKSNAEIGELLGI 753 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV ++ KL R QA ++A R + Sbjct: 754 KLPTVKTHVSHILTKLGVSRRAQAASEARRLHLV 787 >gi|297192920|ref|ZP_06910318.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151558|gb|EFH31236.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R LTERE + L G ++ EIA +L LS TV ++G KL +R+Q Sbjct: 148 EPRQKELARLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQV 207 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 208 VVLAYETGLV 217 >gi|254445229|ref|ZP_05058705.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198259537|gb|EDY83845.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 225 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 40/78 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L L +S+ L++RE LQL + ++++EIA +L +SV TV+ + + KL Sbjct: 145 VMRSLILNPDAASSEIPLSDREKQILQLVAESFSTKEIASRLNISVRTVDNHRTNIMRKL 204 Query: 217 DAVNRIQAIAKAIRFGYI 234 + + AI+ I Sbjct: 205 NLHDVAALTRYAIKHELI 222 >gi|298243907|ref|ZP_06967714.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556961|gb|EFH90825.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 514 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L +G T+ IA +L +S+ TV ++ KL A +R QA+A A+++G Sbjct: 453 ELTEREREVLRLMSEGLTNRAIASRLLISIETVKTHIHHIMQKLQARDRTQAVALAMKYG 512 Query: 233 YI 234 I Sbjct: 513 LI 514 >gi|111023879|ref|YP_706851.1| hypothetical protein RHA1_ro06927 [Rhodococcus jostii RHA1] gi|110823409|gb|ABG98693.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 530 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 A ++A + + +R+ LT+RE L+L G ++ EI Sbjct: 422 ADRLKEEARTGRLDAESVAAVLAAAGQRVS-RRTPWPAGLTDREVEILRLVAQGRSNREI 480 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L ++ T ++ KL NR QA AI G + Sbjct: 481 AADLFIAEKTARNHVERVYAKLGVNNRTQASLAAIDRGLV 520 >gi|116672689|ref|YP_833622.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612798|gb|ABK05522.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 218 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + V+ A G L + + L+ RE LQL Sbjct: 107 AGASGYMLKDAPPEHIRQAVLSAAAGGTALAPEVAARLVGRIRNPEPALSAREIQLLQLL 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + IA +L +S TV +L KL NR AI+ A + I Sbjct: 167 ATGLPNRAIARRLFISEATVKTHLVHIYGKLGVDNRTAAISVATQRRII 215 >gi|291451125|ref|ZP_06590515.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354074|gb|EFE80976.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 223 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G ++ EIAE+L L+ TV ++ KL +R QA+ A G Sbjct: 155 GLTPRETEVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|285017693|ref|YP_003375404.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283472911|emb|CBA15416.1| probable two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 213 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 149 RPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAF 208 Query: 230 RFGYI 234 + Sbjct: 209 ELQLV 213 >gi|94500443|ref|ZP_01306975.1| regulatory protein CsgD [Oceanobacter sp. RED65] gi|94427478|gb|EAT12456.1| regulatory protein CsgD [Oceanobacter sp. RED65] Length = 216 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 39/88 (44%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + Q + + A NLT RE+ L L+ G + +IA L +S Sbjct: 121 RGELWFSRRILSQFMANNRRPPAPEQKPAHNLTRRESQILSLSASGAKNADIAAALNVST 180 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIR 230 HTV ++ + KLD NRIQA+ A Sbjct: 181 HTVKTHMYNLFKKLDVSNRIQAVNWAKE 208 >gi|319947541|ref|ZP_08021771.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746229|gb|EFV98492.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 211 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 143 HDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 202 Query: 231 FGYI 234 + Sbjct: 203 HHLV 206 >gi|307330474|ref|ZP_07609617.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883899|gb|EFN14942.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 71/232 (30%), Gaps = 35/232 (15%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + R+ D + L Sbjct: 15 VDDHPMWRDAVARDLAEAGFDVVATAGDGPQAVRRAKA-----AGPDVLVLDLNLPGL-- 67 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + V+ +L V + + V+ G + Sbjct: 68 -PGVEVCKE--------------VLADRPELRVLVLSASGEHGDVLEAVKSGATGY-LLK 111 Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAA------RNLTERETSC 181 S +L A G V+ ++ L + + A LTERET Sbjct: 112 SASTEELLDAVRRTAAGDPVFTPGLAGLVLGEYRRLAGEPAPTAADQPAVPQLTERETEV 171 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 172 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 223 >gi|119485648|ref|ZP_01619923.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119456973|gb|EAW38100.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 154 YQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + F E+ + + A+ LT+RE L L G +++EIA+ L ++ TV ++ + Sbjct: 138 QKTFGQFAEVPEGSEAYSASNPLTKREQEILALIASGKSNQEIADILYIAPGTVRVHVHT 197 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+A +R QA AI+ + Sbjct: 198 ILKKLNARDRTQAALVAIQKKLV 220 >gi|86146693|ref|ZP_01065014.1| response regulator [Vibrio sp. MED222] gi|218676377|ref|YP_002395196.1| Nitrate/nitrite response regulator protein homolog [Vibrio splendidus LGP32] gi|85835540|gb|EAQ53677.1| response regulator [Vibrio sp. MED222] gi|218324645|emb|CAV26216.1| Nitrate/nitrite response regulator protein homolog [Vibrio splendidus LGP32] Length = 210 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + +IE + V+ +L Sbjct: 81 VILTVSDSPADIEAIVKAGADGYLLKDTEPDELIELLKQAHSGDKAYSSVVARYLNDADS 140 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LTERE LQ GY +++IA+ L +S TV ++ S KL +R A Sbjct: 141 RNDIFDQLTEREMQILQEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATV 200 Query: 227 KAIRF 231 + Sbjct: 201 LYLER 205 >gi|317122209|ref|YP_004102212.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592189|gb|ADU51485.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 280 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 14/130 (10%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE------LF 164 FP+ L GYV+ S L + + G +V++ Sbjct: 148 YIFPI-LEAGAAGYVLKRSAATELVSALRAVVQGHTILHPDVAAKVVSGAARRQKGGGPQ 206 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LTERET L L G T++EIA++L +S+ TV A+ + KLD + ++ Sbjct: 207 EGVPRRVDGLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVEL 266 Query: 225 IAKAIRFGYI 234 AIR G I Sbjct: 267 TKYAIRHGLI 276 >gi|318040623|ref|ZP_07972579.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0101] Length = 79 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + L G T++EI E+L +S TV+ ++ + K A NR+ + A+ G Sbjct: 3 LSERELEIIDLVAQGLTNQEIGERLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDHGK 62 Query: 234 IC 235 IC Sbjct: 63 IC 64 >gi|91223299|ref|ZP_01258565.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|91192112|gb|EAS78375.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] Length = 210 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Query: 150 HGACYQVITDF------LELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + +++ E+ A LT RE L++ +G ++ EIA+ L +S Sbjct: 121 NWLSRRLLDQLVNYYRGREVNSIIEPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISE 180 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 HT+ ++L + KL+ NR QA + A R Sbjct: 181 HTIKSHLYNIFRKLEVKNRTQATSWAKRN 209 >gi|226312583|ref|YP_002772477.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095531|dbj|BAH43973.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 215 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +A + ++++ +F + + + LT RE L L G ++ +I+ KL Sbjct: 118 RAIAVDETPMTRELAFRILKEFAPIGSDVAQPS-KLTSREREILGLVAKGLSNRDISSKL 176 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +S HTV +L + KL NR+Q A + Sbjct: 177 VISEHTVKNHLKNILQKLHLENRVQLARYAFEQSW 211 >gi|223934791|ref|ZP_03626711.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896746|gb|EEF63187.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 211 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ + L+ RE L+ +G ++IA+KLG+S+HTV Y+ Sbjct: 132 IARKVVESLQATRPPKPDDTAELSPREREVLEGLAEGCAYKQIADKLGVSIHTVRNYIRR 191 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL + QA+A+ R Sbjct: 192 IYEKLHVRSSSQAVARYYRH 211 >gi|307311542|ref|ZP_07591183.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318897|ref|ZP_07598328.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306895311|gb|EFN26066.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899559|gb|EFN30188.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 210 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 18/216 (8%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI--PNILIETYGDDFLF 78 L + + A ++ L + + D ++ D I L Sbjct: 11 LAALTEYVGATHYLLARHDVSQD---GGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELE 67 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + L P + + G + + F V G + ++ E Sbjct: 68 RCLAQLQPAFHTMPDDIGLP----------RGVSRSYCAVTFSV--GRTRFSLMLLFPED 115 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 ++L+ E + + V + ++ + LTERE CL +G TS+EIA L Sbjct: 116 VILSQEALRDIAVLAGYVASHKIKADVRHDRECE-LTERELECLFWIAEGKTSDEIAVIL 174 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+S +T+N Y+ S K R +AIA A+R + Sbjct: 175 GISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 210 >gi|219668814|ref|YP_002459249.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539074|gb|ACL20813.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 212 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L G ++ EI + L +S TV +L S KL +R QA KA++ Sbjct: 148 GLSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLK 207 Query: 233 YI 234 + Sbjct: 208 LV 209 >gi|225175953|ref|ZP_03729945.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168541|gb|EEG77343.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 225 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ F ++ A +LT RE L + +G+ ++EIA +L +S TV A+L Sbjct: 131 VAAKVMQRFRRGEDSETNNAVDSLTGREVEVLTMVANGHRNQEIASRLYVSKRTVEAHLA 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL +R +AI A++ G I Sbjct: 191 SIFSKLKVGSRTEAILFALKEGMI 214 >gi|148241325|ref|YP_001226482.1| transcriptional regulator [Synechococcus sp. RCC307] gi|147849635|emb|CAK27129.1| ranscriptional regulator, luxR family [Synechococcus sp. RCC307] Length = 92 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE ++L T++EIA +L +S TV+ ++ + K + NR+ + A+ G Sbjct: 18 LSERELEIIELVAAELTNQEIALRLSISKRTVDNHVSNIFTKTGSRNRVALVNWALSNGK 77 Query: 234 IC 235 IC Sbjct: 78 IC 79 >gi|119489708|ref|ZP_01622467.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119454445|gb|EAW35594.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 100 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 39/63 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE + L G T++EIAE+L +S TV+ ++ + K + NR+ ++ A++ G Sbjct: 11 SLSDRELQVVDLIATGLTNQEIAEQLEISKRTVDNHISNILTKTETENRVALVSWALKSG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|221195335|ref|ZP_03568391.1| transcriptional regulator, LuxR family protein [Atopobium rimae ATCC 49626] gi|221185238|gb|EEE17629.1| transcriptional regulator, LuxR family protein [Atopobium rimae ATCC 49626] Length = 240 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEE 193 A + ++ L+ + S+ LT RE L G ++ + Sbjct: 131 AFTDALSMLVIICHLLDIHLDSTPRLSAVEPASDQTISSQLTRRENEVASLVCCGMSNAQ 190 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 IA KL +S T+ +L + KL NR+Q I Sbjct: 191 IASKLYVSEKTIKTHLSNIFSKLGVRNRVQLI 222 >gi|256788263|ref|ZP_05526694.1| two-component system regulator [Streptomyces lividans TK24] gi|289772155|ref|ZP_06531533.1| two-component system regulator [Streptomyces lividans TK24] gi|289702354|gb|EFD69783.1| two-component system regulator [Streptomyces lividans TK24] Length = 240 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G V+ ++ L + + AA LT+RET L+L G + ++IAE+L +S Sbjct: 148 GLAGLVLGEYRRLASEPAPAAGTDDPGAPRLTDRETEVLRLVAKGLSYKQIAERLVISHR 207 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 208 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 237 >gi|170737858|ref|YP_001779118.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820046|gb|ACA94628.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 242 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 62/228 (27%), Gaps = 20/228 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYG 73 + LH + A FA + + + EL Sbjct: 13 ADWQRALHACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRML 69 Query: 74 DDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVRL---------EGGLLPFAGIA 119 D +G ++ + +E S+ + R G Sbjct: 70 DPLHPSRCAAGDRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDAGRTVGAF 129 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTER 177 +R G F + + ++ L + R LT R Sbjct: 130 SLLRFGIGDANGNGTAGRFAPGEIDALARLQPVAEAALSPLLRARRGIHRIGCEERLTYR 189 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 E +L DG +++EIA L L T+ +L KL NR + + Sbjct: 190 EEQIARLVRDGRSNKEIARDLALGPPTIKTHLMRMYRKLGVSNRTELV 237 >gi|296268635|ref|YP_003651267.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091422|gb|ADG87374.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 212 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 17/160 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138 + ++ R+ +P +A V VI Sbjct: 53 LDVHMPGGGGLEVLRRVREAGIPTRFLALSVSDAAEDVIGVIRGGARGYVTKTISGPELT 112 Query: 139 ----LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + A + + +LT+RE L+L GY +EI Sbjct: 113 DAIHRVADGDAVFSPRLAGFVLDAFASTPAPPIDPELDSLTQREREVLRLIARGYAYKEI 172 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L +SV TV ++ S KL NR + A + Sbjct: 173 AKELFISVKTVETHVSSVLRKLQLSNRHELSRWASARRLV 212 >gi|269796573|ref|YP_003316028.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098758|gb|ACZ23194.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 217 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 17/131 (12%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 AG++ + ++ + A + + + S+ Sbjct: 92 GGLRAGVS---------GFLLKVAPSHELIEAVSLAAQGKAHLHADVTGIVIDRFTSAPE 142 Query: 172 RNL--------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L T+RE L +G ++ EIAE L LS TV +++ K A +R Q Sbjct: 143 TRLRDDLVGALTDREREVLVALAEGQSNTEIAESLHLSETTVKSHVSHIFTKTGARDRAQ 202 Query: 224 AIAKAIRFGYI 234 A+ A G I Sbjct: 203 AVGIAYESGLI 213 >gi|262279135|ref|ZP_06056920.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259486|gb|EEY78219.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 239 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 5/164 (3%) Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVR 123 + + D + P + ++ + GI VR Sbjct: 77 DYECVWQFDDPITAQLHKLQKPTFVNEVMPLEDLK-KTSYYNEFLRAYGLYHGINIYFVR 135 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G I+ ++ + E T L + S LT RE ++ Sbjct: 136 NGMDVGDLRIWRAKDADMFGEREKRILSLLEPYFTQALPVD---LSTQYGLTPREQEVVR 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L G + + +A LG+S T+ +L +A K+ NR + Sbjct: 193 LVSKGLSDKHVANLLGISFTTLRTHLNNAMRKIGCNNRTEMALL 236 >gi|108805731|ref|YP_645668.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766974|gb|ABG05856.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 781 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 71/229 (31%), Gaps = 15/229 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ + L L ++ + + + + + ++L Sbjct: 561 AAREHLEAGLEALRRVGDPEEVR-TCLWFLIMLACERGDAAAARAHAARMVEGASLLQYR 619 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNG 130 Y + H + + E + L G + P F + G Sbjct: 620 YAAPLVLHA--------YARLAVEEGRPARALRLAGAADRLGRSIGTSVGPALRDFLRRG 671 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTERETSCLQLA 185 + EA A L + R A LT RE L+L Sbjct: 672 LEPAWAALGEERGRAAFEAGRALSLREAAAYALEEGPRGEERGPAGAPLTPRELEVLRLV 731 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T ++A +L +S TVNA+L S KL +R A+ A G + Sbjct: 732 GEGMTDAQVAGRLFVSTRTVNAHLRSILRKLGVRSRAAAVRLAQERGLL 780 >gi|94500934|ref|ZP_01307459.1| probable transcriptional regulator [Oceanobacter sp. RED65] gi|94426874|gb|EAT11857.1| probable transcriptional regulator [Oceanobacter sp. RED65] Length = 897 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%) Query: 150 HGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 H Q I +EL + S L++RE + L+L +G +++EIAE+L +S+H Sbjct: 807 HKPFVQAILKNIELTEDASPNKEFAKMRLVLSQREMAVLKLIAEGLSNQEIAERLFISLH 866 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV + KLD +R QAI KA G + Sbjct: 867 TVKTHARRINGKLDVKSRTQAILKAKEVGIL 897 >gi|107025940|ref|YP_623451.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692876|ref|YP_838409.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895314|gb|ABF78478.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650876|gb|ABK11516.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] Length = 251 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 62/228 (27%), Gaps = 20/228 (8%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYG 73 + LH + A FA + + + EL Sbjct: 22 ADWQRALHACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRML 78 Query: 74 DDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVRL---------EGGLLPFAGIA 119 D +G ++ + +E S+ + R G Sbjct: 79 DPLHPSRCAAGDRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDAGRTVGAF 138 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTER 177 +R G F + + ++ L + R LT R Sbjct: 139 SLLRFGIGDANGNGTAGRFAPGEIDALARLQPVAEAALSPLLRARRGIHRIGCEERLTYR 198 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 E +L DG +++EIA L L T+ +L KL NR + + Sbjct: 199 EEQIARLVRDGRSNKEIARDLALGPPTIKTHLMRMYRKLGVSNRTELV 246 >gi|302337621|ref|YP_003802827.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634806|gb|ADK80233.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 214 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+ +G ++EIA++L +S TV +++ KL+ NR+QA+ A Sbjct: 151 SLTTREKDVLRCMLEGKENKEIADELFISCETVKSHIKHIFRKLEVTNRVQAVQVAAEKK 210 Query: 233 YI 234 + Sbjct: 211 IL 212 >gi|23098524|ref|NP_691990.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776750|dbj|BAC13025.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 215 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ L K+ S L+ERE L G G T++EIA++L L++ TV Y+ S Sbjct: 133 VAAKVMPKLLHTSKRELSV--QLSERERVITALIGSGLTNKEIADELFLTIGTVKNYITS 190 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 K + +R Q A+R G Sbjct: 191 ILQKTEQRDRTQLAIFAVRHGI 212 >gi|88859162|ref|ZP_01133803.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819388|gb|EAR29202.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 233 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 13/226 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +K +SL +L+ ++ I + A+N+A ++ L+ ++ EL N++ Sbjct: 21 EKVNSLSDLNNEVNNIAKFLNAKNYAFCVFSTNLNEQESVKIYGELGRALSRLIQDDNLI 80 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + + + P+ I ++ S + +G + + P + + Sbjct: 81 R--------TYCQTEVKPLKLSEITNFFELKD----SRKQKGFSIFCDTLIIPFKGTLYD 128 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G +I +E L E ++ + F KK+S+ N T+RE CL+ A +G Sbjct: 129 FGCLILRTENNKLLKEEHFKSIVIVIYMYDAFKR-CKKKSNKTVNFTKREIECLKWATEG 187 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI++ L ++ TVN ++ + K ++ NR QAIAK G + Sbjct: 188 KTSWEISKILTITDRTVNYHIANCIRKTNSSNRQQAIAKFYAMGIL 233 >gi|270264592|ref|ZP_06192857.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041275|gb|EFA14374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 210 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + I V +I E ++E A + Sbjct: 73 LRNESIDARIIVLTVSDSRSDVYALIDAGADGYLLKDSEPEQLLEHIRAAAEGQNVISDA 132 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D+L ++ LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 133 VADYLSSRSEQHDPFAELTERELDVLQEVARGMSNKQVAAQLHISEETVKVHIRNMLRKL 192 Query: 217 DAVNRIQAIAKAIRF 231 D +R+ A + Sbjct: 193 DVRSRVAATVMYLEH 207 >gi|319442313|ref|ZP_07991469.1| putative two component response regulator [Corynebacterium variabile DSM 44702] Length = 213 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V A GA + L + A LT RE LQL Sbjct: 105 AGAVGYLLKDAPPAELISAVRAAATGATAMSGSVATRLMHREEEPANALTSRELEVLQLV 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ EI L LS TV ++L KL +R A+A A G + Sbjct: 165 ADGRSNREIGATLFLSEATVKSHLVHINTKLGVRSRTSAVAAAREAGML 213 >gi|284050884|ref|ZP_06381094.1| two-component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 215 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + ++LT RE L+L G GY++ EIA++L +S TV ++ S +L+ +R Q Sbjct: 143 DEPLPGYLQDLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRTQ 202 Query: 224 AIAKA 228 A Sbjct: 203 VALLA 207 >gi|282862337|ref|ZP_06271399.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562676|gb|EFB68216.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L +G ++ EIA L +S TV ++ + K A +R QA+ A Sbjct: 152 DGLTPREAEVLVLIAEGLSNREIARALHVSAATVKTHINNLFAKTGARDRTQAVRYAYGR 211 Query: 232 GY 233 G Sbjct: 212 GL 213 >gi|282866345|ref|ZP_06275390.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558741|gb|EFB64298.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 224 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ + + + E K LTERE + L G ++ Sbjct: 119 VHSGDAVVAPSTTRRLLDRFSPMLPSSGREPQHKHV---ERLTEREREVMLLVAQGLSNG 175 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L LS TV ++G KL +R+Q + A G + Sbjct: 176 EIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|260362858|ref|ZP_05775727.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] gi|260880146|ref|ZP_05892501.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|260895263|ref|ZP_05903759.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308085787|gb|EFO35482.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308092058|gb|EFO41753.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|308112231|gb|EFO49771.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] Length = 214 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + A R Sbjct: 155 ELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRN 213 >gi|258510158|ref|YP_003183592.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476884|gb|ACV57203.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 506 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELF 164 + + PV G ++ + + A V+ + + Sbjct: 376 FHLSSLLVCPVIDNRRMLGIMLLDHGGRPFTPDNATIRMVEAMLARAGRMIVMQMYRQAG 435 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT+RE LQL DG ++EI L +S +TV ++ S KL A NR +A Sbjct: 436 AAPITPLTTLTKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEA 495 Query: 225 IAKAIRFGYI 234 +AKA+R I Sbjct: 496 VAKAMRERII 505 >gi|28901301|ref|NP_800956.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153835889|ref|ZP_01988556.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|260900615|ref|ZP_05909010.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|28809814|dbj|BAC62789.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149750643|gb|EDM61388.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|308106917|gb|EFO44457.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|328469239|gb|EGF40185.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 218 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + A R Sbjct: 159 ELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRN 217 >gi|288574415|ref|ZP_06392772.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570156|gb|EFC91713.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 7/150 (4%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + +E L+ +++ LP A + + L EA Sbjct: 55 LDIRMPVEDGISLARKIKDAGLPVAPVMLTSYDSQQYVLASLRAGAKGFLLKTTSPEALA 114 Query: 152 ACYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 Q + + +L+ RE L A G +S+E+A L +S T Sbjct: 115 KALQTVVSGGLYLDSEVASAMGEVPQMEDLSPREREVLLFAARGLSSKEVASHLFISERT 174 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V +L S KL A N+ +A+ A+++G + Sbjct: 175 VQTHLASIYDKLGAHNKTEAMLLALKYGLL 204 >gi|148658346|ref|YP_001278551.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570456|gb|ABQ92601.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 216 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + + + ++ + +L+ERE L L Sbjct: 109 DAPAEALLQTIRRVHAGEVFIQPEIASRTLREAATGRRRAGTIPFDLSEREREVLVLLAQ 168 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++ EIA +L ++ TV ++ + KL A NR QA A R G Sbjct: 169 GLSNREIAGRLSITEGTVKNHVSNILAKLQAENRTQAANIARREGL 214 >gi|307324486|ref|ZP_07603693.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889730|gb|EFN20709.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 215 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 51/109 (46%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L + V A G + +LF+ R+ L+ RE L+L Sbjct: 106 AGAAGYLLKGSSRQELIDAVQTAARGETVLTPSLAGKLFRSRTVEPSPLSGREREVLRLV 165 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G T+ EI +L +S TV +L + KL +R A+ KA+ G++ Sbjct: 166 GRGLTNSEIGTELFVSEATVKTHLLRSYRKLGVSDRTAAVMKAMERGFL 214 >gi|297155595|gb|ADI05307.1| putative response regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAG 186 + T + + + ++ +IT FL + A + LT RE + LA Sbjct: 113 ELLTGIRTVASGDSLLSPVAT-RALITRFLAAPDPEAPLAPSELLASLTAREREVMALAA 171 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ EIAE L +S TV ++ A KL A +R Q + A + G + Sbjct: 172 EGKSNAEIAEVLFVSPLTVRTHVQRAMNKLGARDRAQLVVIAYQSGLV 219 >gi|254424512|ref|ZP_05038230.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192001|gb|EDX86965.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 211 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V HG Y I + L ++ +LT+RE L Sbjct: 101 AGARGYLLKDTTAEDLATAVRQVHHGKRYIPIEVGIRLTERI--QESDLTDRELEVLGEL 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++ EIA+ L +S TV ++ + K +R QA+ A+R G Sbjct: 159 TEGKSNLEIAKALSISEGTVKFHINNILSKFGVSDRTQAVITALRRGI 206 >gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 215 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RE L+L +G +++EIA L ++ TV ++ KLD +R QA Sbjct: 146 REQDGLEVLTPREQEVLRLITEGMSNKEIAANLVIAEKTVKTHVSGILNKLDLQDRTQAA 205 Query: 226 AKAIRFGY 233 A++ G+ Sbjct: 206 IHAMKQGW 213 >gi|83310446|ref|YP_420710.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945287|dbj|BAE50151.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 209 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE LQL G+ + EIA++LG+++ TV + KLD N + A AIR G Sbjct: 147 SLTAREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRG 206 Query: 233 YI 234 I Sbjct: 207 LI 208 >gi|253577576|ref|ZP_04854888.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843045|gb|EES71081.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 227 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + G Q +T L + +TERE L L +G ++++IAE+L +S+ TV Sbjct: 137 MPVMTGEVAQALTRGLR-QRTVQGDDSGMTEREKEVLLLIAEGKSNKDIAEELHISIKTV 195 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + +K + +R Q A R G++ Sbjct: 196 KTHVSNLLMKCELEDRTQLAIYAHRQGWV 224 >gi|83952011|ref|ZP_00960743.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius nubinhibens ISM] gi|83837017|gb|EAP76314.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius nubinhibens ISM] Length = 252 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 65/228 (28%), Gaps = 10/228 (4%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILI 69 +S L+ L L L N+D + D Sbjct: 13 ASELETLWDHLVRRMAGYGFDRLIYGATRFRTATSLGDAEDFVILTNHDPEYMDGFVNGG 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFP---VR 123 + + P W + E + + + V AG + V Sbjct: 73 LYFHAPMVKWALEHEGPCSWSVLHEMAETGTLSAQERKVVAFNISHQVTAGYSISFQSVS 132 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180 + + + I HG ++ + L R+LT R+ Sbjct: 133 ARTKAAIALTARAGMGQDEVDAIWAEHGDDILLLNNIAHLRILSLPYTSPTRSLTARQRE 192 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L GDG T ++IA L L+ TV +L A L QA+ KA Sbjct: 193 VLGWVGDGKTVQDIALLLNLTPATVEKHLRLARDALSVETTAQAVLKA 240 >gi|240949973|ref|ZP_04754289.1| nitrate/nitrite response regulator protein [Actinobacillus minor NM305] gi|240295573|gb|EER46299.1| nitrate/nitrite response regulator protein [Actinobacillus minor NM305] Length = 209 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 13/141 (9%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + + V ++ ++E + Sbjct: 69 LRSLRAKEVDARIVVLTVSDEQSDIVALMDAGVDGYLLKDSDTAELVENIQKAARGEMVL 128 Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + L + ++ LT+RE LQ G ++++IA +L +S TV ++ + Sbjct: 129 SDAVRKHLLEHRPQADPLATLTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLL 188 Query: 214 VKLDAVNRIQAIA--KAIRFG 232 KL+ +R+ A A + G Sbjct: 189 RKLNVHSRVAATVLYLAQQKG 209 >gi|239979247|ref|ZP_04701771.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 227 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G ++ EIAE+L L+ TV ++ KL +R QA+ A G Sbjct: 159 GLTPRETEVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|256833092|ref|YP_003161819.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256686623|gb|ACV09516.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 233 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++S +LT+RE + L G ++ EIA +L ++ TV ++G K A +R+Q Sbjct: 159 SSPQASTIASLTDRERDVMLLIAKGKSNTEIARELFVAEATVKTHVGRILQKFGARDRVQ 218 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 219 IVVAAYENGLV 229 >gi|260584047|ref|ZP_05851795.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC 700633] gi|260158673|gb|EEW93741.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC 700633] Length = 211 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G +++EIA++ +++ TV ++ + KL +R QA A + + Sbjct: 150 TSREKEVLLLIAQGKSNQEIADECFITLKTVKTHVSNILSKLQVEDRTQATIYAFKHHLV 209 >gi|237707990|ref|ZP_04538471.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|237725262|ref|ZP_04555743.1| transcriptional regulator [Bacteroides sp. D4] gi|229436528|gb|EEO46605.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|229457976|gb|EEO63697.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] Length = 216 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 C ++ +K+ +LT E L+L G T++EIA + LSV+TV Sbjct: 123 RLQYICTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVMT 182 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL+ N +A A+R G + Sbjct: 183 HRKNIFRKLEVNNVYEATKYALRAGIV 209 >gi|297191605|ref|ZP_06909003.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719345|gb|EDY63253.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 9/123 (7%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAA---- 171 FP L GY+ ++ + +V+ G V LE Sbjct: 94 LFPA-LRAGARGYLTKDADGDEIVRAIQDVVAGRAGLSPVVQRRLLEQVTAEPPPTGPRL 152 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L +G + +IA +LG+S TV ++ + K +R QA+ A R Sbjct: 153 PDGLTAREGEVLTLIAEGLGNTDIAARLGISTATVKTHINNLFAKAGLHDRAQAVRYAYR 212 Query: 231 FGY 233 G Sbjct: 213 EGL 215 >gi|157691669|ref|YP_001486131.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194014892|ref|ZP_03053509.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|157680427|gb|ABV61571.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194013918|gb|EDW23483.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 216 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ E +++ + LT RE L G +++EIA L +S TV ++ Sbjct: 127 HITNFLVQHLTEPKEQKWELMKELTNRERDVLFEIAKGKSNKEIASSLFISEKTVKTHVS 186 Query: 211 SATVKLDAVNRIQAIAKAI 229 KL+ +R QA A+ Sbjct: 187 HVLSKLELADRTQAALYAV 205 >gi|332669606|ref|YP_004452614.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338644|gb|AEE45227.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 224 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 135 TSEFLMLANEVIIEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 E ++ A + LT RE L+ +G ++ E Sbjct: 120 GGEAVVSARVTRRMLELFAEHLPAAGADRGRDAPHPRLAGLTPREVEVLREVAEGLSNGE 179 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA++L LS TV ++G KL +R+QA+ A G + Sbjct: 180 IADRLFLSEATVKTHVGRILAKLRVRDRVQAVVVAYETGLV 220 >gi|291514919|emb|CBK64129.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Alistipes shahii WAL 8301] Length = 212 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + V Q+++ + + +A L+ RE L G +++EI Sbjct: 111 GDVIEAVETVAAGGSYFSPQLLSSLTGRMRTREDAADEQLSSREREILVAVCRGLSNQEI 170 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L +S TV+ + + K N + AIR G + Sbjct: 171 ADELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 210 >gi|68536238|ref|YP_250943.1| two-component system response regulator TcsR3 [Corynebacterium jeikeium K411] gi|260578938|ref|ZP_05846841.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] gi|68263837|emb|CAI37325.1| two-component system response regulator TcsR3 [Corynebacterium jeikeium K411] gi|258602912|gb|EEW16186.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] Length = 216 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + ++ +LT RE L LA G ++ IA+ L L+ TV +++ KL+ NR Sbjct: 144 LRGRLANPFESLTNREQEVLVLASQGKSNRAIAKDLVLTEATVKSHMAHVFSKLNVKNRT 203 Query: 223 QAIAKAIRFGYI 234 A+A A G I Sbjct: 204 AAVAVARERGII 215 >gi|327443251|gb|EGE89905.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] Length = 218 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|269837581|ref|YP_003319809.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786844|gb|ACZ38987.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 211 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQL 184 GY++ + L + A G + L + + LT RE L+L Sbjct: 98 AGATGYLLKDTTREDLFRAIRAAAAGQPLLAPSVAARLMARLNQPRQEPLTPREIDVLRL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA +L +S TV ++L KLD +R A+ A+ G I Sbjct: 158 VAQGASNKEIAARLSISQATVKSHLIHIFDKLDVDDRTAAVTVALERGII 207 >gi|332991886|gb|AEF01941.1| two-component system regulatory protein [Alteromonas sp. SN2] Length = 214 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LE+ + L+ +E L+L GY+++EI+E + S TV + + K+ + Sbjct: 141 LEVSFESFEQPETLSPKEIEILRLVAAGYSNKEISEAMFKSTGTVKNQVSAIMAKMGVRD 200 Query: 221 RIQAIAKAIRFGYI 234 R +A+ KA+ G++ Sbjct: 201 RTRAVLKALELGWL 214 >gi|328754436|gb|EGF68052.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] Length = 218 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVQQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|255324053|ref|ZP_05365178.1| transcriptional regulatory protein DegU [Corynebacterium tuberculostearicum SK141] gi|255298910|gb|EET78202.1| transcriptional regulatory protein DegU [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V+ A L ++ +L+ RE L+ Sbjct: 97 AGAMGYLLKDSPEQALHEAVLNTAAHRRTLAPEVVDLLAQRVGRPQESLSARELEILRAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A++L +S TV +L KL R A+ A I Sbjct: 157 SSGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205 >gi|322690880|ref|YP_004220450.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320455736|dbj|BAJ66358.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] Length = 248 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + GA LT+RE L G +++EIA+KL +S Sbjct: 156 EGDFMAANVGAHGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFIS 215 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV ++ K++A +R+QA+ A + Sbjct: 216 LPTVKTHVAHILAKINARDRVQAVVFAYENHLV 248 >gi|149187522|ref|ZP_01865819.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1] gi|148838402|gb|EDL55342.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1] Length = 210 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------ACYQV 156 L + V ++ + IIE A Sbjct: 71 LREDDFQGHIVILTVSDIPADIDALVKAGADGYLLKDTEPDEIIELLRGLTSGNKAFSSA 130 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I +LE S LTERE LQ G+ +++IA++L +S TV ++ S KL Sbjct: 131 IEKYLEERANTSDVFATLTEREMQILQEVAKGFRNKQIADRLFISESTVKVHMKSLLRKL 190 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 191 QVPSRTAATILYLER 205 >gi|309813018|ref|ZP_07706746.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] gi|308433090|gb|EFP56994.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] Length = 258 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L L G G ++ EIA L + TV ++ + +KL +R+QA+ A Sbjct: 190 RLDDLTPREREVLGLLGRGLSNAEIAAALFVGEATVKTHVSNVLMKLGLRDRVQAVVAAY 249 Query: 230 RFGYI 234 G + Sbjct: 250 ETGLV 254 >gi|163800212|ref|ZP_02194113.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159175655|gb|EDP60449.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 216 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Query: 150 HGACYQVITDFL------ELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + +++ L EL A LT RE L++ +G ++ EIA+ L +S Sbjct: 127 NWLPRRLLDQLLTYYKGKELQSMIEPATEVELTRREIQVLKMLKEGGSNIEIADSLFISE 186 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 HT+ ++L + K++ NR QA A R Sbjct: 187 HTIKSHLYNIFRKIEVKNRTQATRWAKRN 215 >gi|265754224|ref|ZP_06089413.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] gi|263234933|gb|EEZ20488.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] Length = 214 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 C ++ +K+ +LT E L+L G T++EIA + LSV+TV Sbjct: 121 RLQYICTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVMT 180 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL+ N +A A+R G + Sbjct: 181 HRKNIFRKLEVNNVYEATKYALRAGIV 207 >gi|227514972|ref|ZP_03945021.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086671|gb|EEI21983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 217 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE L GYT++EIA KL +S TV A+ + KL NR + AI Sbjct: 154 SLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLENRADLVRYAIHHH 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|56696641|ref|YP_167002.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678378|gb|AAV95044.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 258 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 78/237 (32%), Gaps = 15/237 (6%) Query: 13 SLQELSPRLHLIQNRIKARN-FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SL + ++ + N F +N P+ L + + + + Sbjct: 14 SLSHIFDDAARWEHAVARLNEFGFKALNMGQFTPKSGILHWARSSMAPNWLKLYAEGGYS 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL-EGGLLPFAGIAFPVRLGFHKNG 130 D L G + S + S L++ + V ++ Sbjct: 74 DADLVLAQARQGPESLYIDSGRRLQESNSDTALALYSGLVEHGYRHVFSLIVPCPGNQAM 133 Query: 131 YVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAARNLTE----------R 177 V ++ + E + T+ + S+ ++LT R Sbjct: 134 LVALFTDHPEADSWMTEQSAGMRILATVIGTNLGPGTEHGQSSGQDLTPILGTTAPLSRR 193 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L DG +E+IA + +S TV +L SA KL A R A+ +A++ G + Sbjct: 194 EREALHLLADGLRNEQIAAAMKISEVTVRMHLKSARDKLRAPTREAALVRAMQMGLL 250 >gi|67922881|ref|ZP_00516379.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67855305|gb|EAM50566.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 221 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Query: 159 DFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L L + + L+ERE L+L +G ++ +IAE L LS +T+ ++ Sbjct: 140 ARLVLDNLKPPTSEPNQNISLLSERELEVLKLIVEGKSNNQIAEDLYLSTNTIKTHVRGI 199 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 200 MNKLAVDDRVQAAVVALRSGLV 221 >gi|302546104|ref|ZP_07298446.1| transcriptional regulatory protein DegU [Streptomyces hygroscopicus ATCC 53653] gi|302463722|gb|EFL26815.1| transcriptional regulatory protein DegU [Streptomyces himastatinicus ATCC 53653] Length = 228 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Query: 151 GACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 G V+ ++ L + + A A LTERET L+L G + ++IAE+L +S T Sbjct: 137 GLAGLVLGEYRRLASEPAPATADQPVAPQLTERETEVLRLVAKGLSYKQIAERLVISHRT 196 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V ++ + KL NR++ + AI G Sbjct: 197 VQNHVQNTLGKLQLHNRVELVRYAIEAGL 225 >gi|229817781|ref|ZP_04448063.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] gi|229785570|gb|EEP21684.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] Length = 248 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + GA LT+RE L G +++EIA+KL +S Sbjct: 156 EGDFMAANVGAHGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFIS 215 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV ++ K++A +R+QA+ A + Sbjct: 216 LTTVKTHVAHILSKINARDRVQAVVFAYENHLV 248 >gi|319442855|ref|ZP_07992011.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 251 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G +++EIA +L +S+ TV ++G K + +R+ A+ A R Sbjct: 180 DPLTPREREILVLMATGASNQEIAARLFVSLPTVKTHVGRVLAKTGSRDRVHAVLFAFRH 239 Query: 232 GYI 234 G + Sbjct: 240 GLV 242 >gi|239942985|ref|ZP_04694922.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989445|ref|ZP_04710109.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446458|ref|ZP_06585848.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349405|gb|EFE76309.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + L V AHG Q+I +F+ RSS +L Sbjct: 100 LRVGASGFLLKDASPRQLDEAVRQVAHGEALLSPSVTRQLIQEFVRRPAVRSSTTDLRSL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE +L GY + EIA KL L T+ +++ KL +R Q + A G + Sbjct: 160 TGREIDVFRLLVQGYGNAEIARKLVLGESTIKSHVQHLYRKLGVRDRAQVVIFAYENGLV 219 >gi|227548560|ref|ZP_03978609.1| two-component response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079389|gb|EEI17352.1| two-component response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 201 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 41/109 (37%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V+ A G L ++ L+ RE LQ Sbjct: 93 AGALGYMLKDAPEPELHAAVLSAAGGKRVLSPQIAGVLAERVMHPDEALSTREIEILQAL 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA L +S TV +L KL NR A+ KA I Sbjct: 153 QTGASNREIASSLFISEATVKTHLIHIYSKLGVDNRTAAVDKARERRII 201 >gi|145640801|ref|ZP_01796383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R3021] gi|148826630|ref|YP_001291383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittEE] gi|229845772|ref|ZP_04465884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 7P49H1] gi|145274315|gb|EDK14179.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 22.4-21] gi|148716790|gb|ABQ99000.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittEE] gi|229810776|gb|EEP46493.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 7P49H1] Length = 208 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I + ++E Q Sbjct: 72 LRAEGIDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + +LT+RE L+ G ++++IA +L +S TV ++ + KL Sbjct: 132 IKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 192 NVHSRVAATVL 202 >gi|78183869|ref|YP_376303.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78168163|gb|ABB25260.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 92 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 38/67 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L+ RE +QL +G T++EIA++L +S TV+ ++ + K + NR+ + A Sbjct: 9 PLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWA 68 Query: 229 IRFGYIC 235 + G IC Sbjct: 69 MDNGKIC 75 >gi|117925383|ref|YP_866000.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1] gi|117609139|gb|ABK44594.1| two component transcriptional regulator, LuxR family [Magnetococcus sp. MC-1] Length = 206 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GYV+ + F L + ++ A +V+ + + ++ L+ RE ++ Sbjct: 96 AGALGYVVKDNAFSELLDAILAVAAGKRFVSEVVAEKVNELERLDDLPVQLSPREKEVVR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG T++EIA LG+S TV+ + KL+ + A+R G + Sbjct: 156 LVADGQTNKEIARSLGISPKTVDTHRTRLMRKLNLHTTADVVRYAMRMGLV 206 >gi|332799645|ref|YP_004461144.1| LuxR family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697380|gb|AEE91837.1| two component transcriptional regulator, LuxR family [Tepidanaerobacter sp. Re1] Length = 215 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ ++ L + S +NLT RE L G ++ EI+ LG+S TV ++ Sbjct: 131 LTRALVAEYNRLTQPVSNNDVRKNLTAREKEVLADIAKGMSNREISIDLGISEKTVKNHV 190 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL+ ++R QA AI+ + Sbjct: 191 SSILRKLNLMDRTQAAVFAIKNRLV 215 >gi|261406817|ref|YP_003243058.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283280|gb|ACX65251.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 225 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET LQL G + EI+ L +S T ++ KL A++R QA+ AIR Sbjct: 163 ALTERETEVLQLLAYGKRNHEISAILCISEGTTKTHIHHIMQKLGALDRTQAVVTAIRMK 222 Query: 233 YI 234 + Sbjct: 223 LV 224 >gi|332072188|gb|EGI82674.1| response regulator [Streptococcus pneumoniae GA41301] Length = 199 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E S L+ G +++EIA+KL LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEISVLKGVAQGLSNQEIADKLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|310824729|ref|YP_003957087.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309397801|gb|ADO75260.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 200 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL--------MLANEVIIEAHGACYQV 156 + + +R G I + I H V Sbjct: 61 LRAIRREFPDARILVLTLRQGDEDVHQAIQAGARGYLLKGATGPEILDAIRAVHRGLRHV 120 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + +R + LTERE L+ G ++++IA++L ++ TV A++ KL Sbjct: 121 APEAAAMLVERVGDS-PLTERERQTLEAMARGRSNKQIAQELSITEATVKAHVTQILSKL 179 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+ +A+R G I Sbjct: 180 GVDDRTQAVTRALRRGLI 197 >gi|299770091|ref|YP_003732117.1| response regulator [Acinetobacter sp. DR1] gi|298700179|gb|ADI90744.1| response regulator [Acinetobacter sp. DR1] Length = 239 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 58/211 (27%), Gaps = 10/211 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + I ++A A Y +S + + D + + I + D Sbjct: 35 ENIIADIAILLRADFAASYIWDSRHNL----SKDGVIWKIDPKAMEDY-ECIWQFDDPIT 89 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + P + ++ + GI G + Sbjct: 90 AQLHKLQKPTFVNEVMPLADLK-KTGYYNEFLKTYGLYHGINIYFVRNGMDIGDLRIWRA 148 Query: 138 FLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + T L L S LT RE + L G + +E+A Sbjct: 149 QDADMFGEREKRILNLLEPYFTQALPLD---LSTQYGLTPREQEVVHLVSKGLSDKEVAS 205 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LG+ T+ +L +A K+ NR + Sbjct: 206 LLGIGFTTLRTHLNNAMRKIGCNNRTEMALL 236 >gi|205374386|ref|ZP_03227184.1| spore germination protein E [Bacillus coahuilensis m4-4] Length = 74 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTRREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|218247412|ref|YP_002372783.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061251|ref|YP_003139139.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167890|gb|ACK66627.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591417|gb|ACV02304.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 210 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Query: 159 DFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L L + L+ERE L+L +G ++ EIAE L LS +T+ ++ Sbjct: 129 ARLVLDNLKPPTPEPNQNLALLSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGI 188 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 189 MNKLAVDDRVQAAVVALRSGLV 210 >gi|68249325|ref|YP_248437.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 86-028NP] gi|145628395|ref|ZP_01784196.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 22.1-21] gi|145638479|ref|ZP_01794089.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittII] gi|68057524|gb|AAX87777.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 86-028NP] gi|144980170|gb|EDJ89829.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 22.1-21] gi|145272808|gb|EDK12715.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittII] gi|309751610|gb|ADO81594.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R2866] gi|309973777|gb|ADO96978.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R2846] Length = 208 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I + +++ Q Sbjct: 72 LRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLDQIKRIAQGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + +LT+RE L+ G ++++IA +L +S TV ++ + KL Sbjct: 132 IKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 192 NVHSRVAATVL 202 >gi|307711412|ref|ZP_07647828.1| response regulator [Streptococcus mitis SK321] gi|307616785|gb|EFN95969.1| response regulator [Streptococcus mitis SK321] Length = 210 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L A + A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA + + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYSFQHHLV 205 >gi|302559483|ref|ZP_07311825.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302477101|gb|EFL40194.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183 ++A + A G ++I +F L + + R LTERET L Sbjct: 105 DASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDARPRTPLRQRVGELTERETEVLA 164 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA +L ++ TV ++G VKL +R QA A G + Sbjct: 165 LIAQGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 215 >gi|317482273|ref|ZP_07941294.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916289|gb|EFV37690.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 248 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 242 Query: 229 IRFGYI 234 + Sbjct: 243 YENHLV 248 >gi|310643684|ref|YP_003948442.1| transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248634|gb|ADO58201.1| Transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 75 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T+ +IA +L +S TV ++ + KL+ R QA+ + IR G Sbjct: 13 LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRLG 71 >gi|307327036|ref|ZP_07606226.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887334|gb|EFN18330.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 229 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ + ++ + LT+RE + L G ++ Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAP-MLPGGGGSGGRVRPELERLTDREREVVLLVAQGLSNG 177 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L LS TV ++G KL+ +R+Q + A G + Sbjct: 178 EIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETGLV 219 >gi|88800203|ref|ZP_01115771.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] gi|88777049|gb|EAR08256.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] Length = 217 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ LTER+ L G++S+EIAEKL LS HTV ++ + Sbjct: 133 IIARLMLQKFHRNTPTPKTPETLTERQVKILTYVSQGFSSKEIAEKLSLSYHTVTTHIKN 192 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R +A+ +A + G + Sbjct: 193 IYAKLQVNSRTEALHEAAKLGIL 215 >gi|269965326|ref|ZP_06179446.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|269829972|gb|EEZ84201.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] Length = 218 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%) Query: 150 HGACYQVITDFLELFKKRS------SAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + +++ + ++ R A LT RE L++ +G ++ EIA+ L +S Sbjct: 129 NWLSRRLLDQLVNYYRGREANNIIEPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISE 188 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 HT+ ++L + KL+ NR QA + A R Sbjct: 189 HTIKSHLYNIFRKLEVKNRTQATSWAKRN 217 >gi|271964056|ref|YP_003338252.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507231|gb|ACZ85509.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + +++ + + +LT RE L+ G T+ EIA +L + Sbjct: 123 DALLDPAVTTRVIASFAGRHDPAPPPQLADLTPRELEVLRFLARGLTNAEIAGQLFVGEA 182 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ +KL +R QA+ A G + Sbjct: 183 TVKTHVARVLMKLHLRDRAQAVVFAYESGVV 213 >gi|160896554|ref|YP_001562136.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362138|gb|ABX33751.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 223 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 42/126 (33%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 + + + +++ E++ + A + + Sbjct: 95 LAAALRNGAQGYLLKTIDGDLLSEALRRAARGEPVVSPEMMGKLVAAFQSQGAPEPQAPE 154 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A L+ RE L G +++EIA L ++ TV ++ KL +R+QA Sbjct: 155 PDEAPASPLSPREEEVLVQIARGASNKEIARTLDIAETTVKIHVQHILRKLGLSSRVQAA 214 Query: 226 AKAIRF 231 A Sbjct: 215 VYASER 220 >gi|33866798|ref|NP_898357.1| transcriptional regulator [Synechococcus sp. WH 8102] gi|33639399|emb|CAE08783.1| possible transcriptional regulator [Synechococcus sp. WH 8102] Length = 91 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 39/75 (52%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + +L+ RE ++L +G T++EIA++L +S TV+ ++ + K + N Sbjct: 1 MSSSDPSDPLNISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60 Query: 221 RIQAIAKAIRFGYIC 235 R+ + A+ G IC Sbjct: 61 RVALLNWAMDNGKIC 75 >gi|309789860|ref|ZP_07684439.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308228164|gb|EFO81813.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 203 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 2/112 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 GY+ E LA + HG + L +++ +LT RE L Sbjct: 91 RAGALGYLYKDVEADQLAIAIRNAMHGRATIDAQLLHVLTHQTDKAAQRPDLTNREREVL 150 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G T+ +IA+ L +S TV ++ S KL NR +A A++ I Sbjct: 151 RLLVAGKTNHQIADLLKISPATVRIHVSSILAKLGVNNRTEAAIIAVQHKLI 202 >gi|307295298|ref|ZP_07575137.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878801|gb|EFN10020.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 222 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 11/196 (5%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 L + + + P + + Sbjct: 9 LATTVFGWSGAQDVWWDDRRFALKTPLAEACRIEGQPFWADASGAWNEQGKRILAHLDFS 68 Query: 110 GGLLPFAG---IAFPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVIT------- 158 A I PV L F + G V + L ++ H +++ Sbjct: 69 YFGKMVAHPASIVVPVHLPFSRIGMVALSCFDNLRADLSAELKRHYYLIHLLSHFFINDY 128 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L + LT E SCL+ G G T +E+A +G + T+ +L +A KL A Sbjct: 129 AHLSRKDRWLPTWAALTPLEVSCLRWIGRGKTDDEVAAIMGRARPTIRFHLQNAAKKLGA 188 Query: 219 VNRIQAIAKAIRFGYI 234 VNR QA+ A + G++ Sbjct: 189 VNRTQAVFLAAQLGFL 204 >gi|78213914|ref|YP_382693.1| LuxR family transcriptional regulator [Synechococcus sp. CC9605] gi|78198373|gb|ABB36138.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9605] Length = 92 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L+ RE ++L +G T++EIA++L +S TV+ ++ + K + NR+ Sbjct: 5 DGTDPLEISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVAL 64 Query: 225 IAKAIRFGYIC 235 + A+ G IC Sbjct: 65 LNWAMDNGKIC 75 >gi|16272666|ref|NP_438884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae Rd KW20] gi|145630463|ref|ZP_01786243.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R3021] gi|145632075|ref|ZP_01787810.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 3655] gi|145634865|ref|ZP_01790573.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittAA] gi|145637737|ref|ZP_01793389.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittHH] gi|148827914|ref|YP_001292667.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittGG] gi|229844595|ref|ZP_04464734.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 6P18H1] gi|260579818|ref|ZP_05847648.1| nitrate/nitrite response regulator protein [Haemophilus influenzae RdAW] gi|260583177|ref|ZP_05850957.1| nitrate/nitrite response regulator protein narP [Haemophilus influenzae NT127] gi|319775331|ref|YP_004137819.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3047] gi|319897771|ref|YP_004135968.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3031] gi|329122673|ref|ZP_08251251.1| nitrate/nitrite response regulator protein NarL [Haemophilus aegyptius ATCC 11116] gi|1171656|sp|P44845|NARP_HAEIN RecName: Full=Nitrate/nitrite response regulator protein homolog gi|1573730|gb|AAC22384.1| nitrate/nitrite response regulator protein (narP) [Haemophilus influenzae Rd KW20] gi|144983853|gb|EDJ91295.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R3021] gi|144986982|gb|EDJ93512.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 3655] gi|145268031|gb|EDK08027.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittAA] gi|145269086|gb|EDK09037.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittHH] gi|148719156|gb|ABR00284.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittGG] gi|229812309|gb|EEP47999.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 6P18H1] gi|260093102|gb|EEW77035.1| nitrate/nitrite response regulator protein [Haemophilus influenzae RdAW] gi|260093795|gb|EEW77703.1| nitrate/nitrite response regulator protein narP [Haemophilus influenzae NT127] gi|301169444|emb|CBW29044.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Haemophilus influenzae 10810] gi|317433277|emb|CBY81652.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3031] gi|317449922|emb|CBY86134.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3047] gi|327472547|gb|EGF17977.1| nitrate/nitrite response regulator protein NarL [Haemophilus aegyptius ATCC 11116] Length = 208 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I + ++E Q Sbjct: 72 LRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + +LT+RE L+ G ++++IA +L +S TV ++ + KL Sbjct: 132 IKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 192 NVHSRVAATVL 202 >gi|126728963|ref|ZP_01744778.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37] gi|126710893|gb|EBA09944.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37] Length = 298 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 80/240 (33%), Gaps = 11/240 (4%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 + L +++ + L + + + + DF +Q + D D Sbjct: 22 DFLLRLEATRTTD--AVWELFLDLAHGLDLNVVEYVYSADFRNWEQAQFIRTTFTSDWLD 79 Query: 64 IPNILIETYGDDFLF-HFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 H L P I + I + + V L AG+AF Sbjct: 80 RVRAYPHIRDTSDFRTHGCRYLTPLKIGAAYLPSMGEISADKRRHVLLAAEHGLNAGVAF 139 Query: 121 PVRLGF-HKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL 174 P+R+G + F + A + ++ H A + ELFK L Sbjct: 140 PLRMGDPGHAALITFGGDHSAEAFDALLARHGWTLHTAALAGHARYAELFKTEFIERNQL 199 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T ++ L L G G ++IA KLG+S V L S K A NR A R G + Sbjct: 200 TAKQKELLCLIGHGMMDKQIAHKLGVSFSAVRQRLASVQAKTGAQNRADLAGLAARIGLV 259 >gi|291299967|ref|YP_003511245.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569187|gb|ADD42152.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 214 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179 L NG+++ + L + + A G L + + A LTERE Sbjct: 96 LRAGANGFLLKRTPPDDLLAGIRVVARGDALLFPAAVRRLAAGHTGRSTLDAAGLTEREA 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L LS TV ++ KL +R QA+ KA G++ Sbjct: 156 EVLRLMARGLSNAEIAARLFLSAETVKTHVAKILAKLRVRDRTQAVIKAYEAGFV 210 >gi|157150612|ref|YP_001449919.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075406|gb|ABV10089.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 214 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 146 HDDLTARERDILGLLAKGYENQRIADELYISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 205 Query: 231 FGYI 234 + Sbjct: 206 HHLV 209 >gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 229 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 76/226 (33%), Gaps = 12/226 (5%) Query: 14 LQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70 + + + + ++ F++ N+ + QQ + + + D L + Sbjct: 8 VDDEPGLREAVSDYLQESGFSVQVASNAREGWDWMQQNTPDLVISDVMMPQVDGYQFLKQ 67 Query: 71 TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D +P+I+ + + + + + L P +A V Sbjct: 68 LREDP-----RFQTVPVIFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAI-VENLLS 121 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + E + + ++T + + + +LT RE S L L + Sbjct: 122 RRLTKATGEESETIDIAELANQIAQIKALLTQRSAISQSPAPFKIDLTPREQSVLNLVAE 181 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA +L SV V Y+ K +R + + A+ G Sbjct: 182 GLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 227 >gi|332663404|ref|YP_004446192.1| LuxR family ATP-dependent transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332218|gb|AEE49319.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 147 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + NL++RE L L GY+++EIAE L +S++T+ + + +KLD R Sbjct: 75 RLEPIQLLEKYNLSKREYEVLTLIAQGYSNQEIAETLFVSLNTIKTHSSNVFLKLDVKRR 134 Query: 222 IQAIAKAIRFGYI 234 QA+ KA G + Sbjct: 135 TQAVQKAKEIGLL 147 >gi|222110965|ref|YP_002553229.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730409|gb|ACM33229.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 262 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + + ++ L++RE L++ G Sbjct: 157 QAVLQVANGGASITPNLARRLLQRFDPSGAAAPHAQRRVEQETERLSQREKEVLRMVASG 216 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 YTS EI +L +S TVN ++ + KL R QA+ A G Sbjct: 217 YTSAEIGNRLFISSLTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 261 >gi|225163774|ref|ZP_03726073.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224801604|gb|EEG19901.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 227 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 6/137 (4%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNG-YVIFTSEFLMLANEVIIEAHGACYQVITDFL 161 L +++ L I + + +L ++ + ++V Sbjct: 66 DLIQQIKDAGLLTRIIMLTMHRTRLTVHEAFSVGANAFVLKSDAFEDLVDIIHRVHEGEN 125 Query: 162 ELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L K L+ RE L+ G +++EI+ +L +S TV + KL Sbjct: 126 TLTSKGLPPYEPACAATLSPREKDVLEGISAGLSNKEISRRLAISSKTVETHRSRIMQKL 185 Query: 217 DAVNRIQAIAKAIRFGY 233 + + + +A+R G Sbjct: 186 NVTKATELVREAMRSGL 202 >gi|90410965|ref|ZP_01218979.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum 3TCK] gi|90328178|gb|EAS44489.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum 3TCK] Length = 194 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156 + + + + V ++ + +I + Sbjct: 57 MRAEGILASIVVLTVSDSRSDVKALVAAGADGYLLKDTEPDELISLLKQALCGGKAYSNI 116 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + LE ++ +LT+RET LQ GY +++IA+ L +S TV ++ S KL Sbjct: 117 VREHLESNTEQDCLLSSLTDRETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKL 176 Query: 217 DAVNRIQAIAK 227 +R A Sbjct: 177 QVKSRTAATVL 187 >gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 9/96 (9%) Query: 148 EAHGACYQVITDFLELFKKR---------SSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 E ++ L + + LT ET LQ G ++ EIA +L Sbjct: 119 ELLAQIQALLKQTARLREAQGRQALPGPTPPPGIELTPTETRILQYVARGMSNREIAAEL 178 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV +++ + K NR + AI + Y+ Sbjct: 179 HVSQRTVESHVSNMLGKTGCHNRTELARWAIDYHYV 214 >gi|297565492|ref|YP_003684464.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849941|gb|ADH62956.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 211 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L + R+ + +L+ RE L L G +++EIA +L +S TV +L KL Sbjct: 132 AARLLGRMRAPSDESLSTRELEVLSLVAKGLSNKEIARELKISEATVKTHLLHTFGKLGV 191 Query: 219 VNRIQAIAKAIRFGYI 234 +R A+ A+ G + Sbjct: 192 DDRTAAVTVALERGIL 207 >gi|291295193|ref|YP_003506591.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470152|gb|ADD27571.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 216 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + EV+++A Q+I DF + A L+ERE L+L GYT+ EIA + Sbjct: 116 RRVYQGEVLLDAEM-AEQIIQDFKAKQETTPKAHAELSEREVQILRLVAQGYTNLEIAAE 174 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L LS TV L KL NR QA A+R G Sbjct: 175 LSLSEKTVRNRLSDIFQKLHLNNRTQAALYALREGL 210 >gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 231 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 79/227 (34%), Gaps = 12/227 (5%) Query: 14 LQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70 + + +++ ++ F++ N+ + QQ + + + D L + Sbjct: 8 VDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVDGYQFLKQ 67 Query: 71 TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D LP+++ + + + + + L P +A L Sbjct: 68 LREDP-----RFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLLTR 122 Query: 128 KNGYVIFTSEFLM-LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +N T+E + ++T + + + +LT RE S L L Sbjct: 123 RNSKPPKTTEEGETPDIAELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVA 182 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++EIA +L SV V Y+ K +R + + A+ G Sbjct: 183 EGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|37519813|ref|NP_923190.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210804|dbj|BAC88185.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 232 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE LQL G+++E IA++L ++V TV ++ + KL A +R QA A+R Sbjct: 168 ASPLTERELEVLQLIVQGHSNEGIAQQLYITVGTVKTHVRNILSKLCADDRTQAAVLALR 227 Query: 231 FGYI 234 G + Sbjct: 228 SGLV 231 >gi|317968117|ref|ZP_07969507.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0205] Length = 89 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE +QL G T++EI E L +S TV+ ++ + K A NR+ + A+ G Sbjct: 14 LSERELEIIQLVAQGLTNQEIGENLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDHGK 73 Query: 234 IC 235 IC Sbjct: 74 IC 75 >gi|319762877|ref|YP_004126814.1| regulatory protein luxr [Alicycliphilus denitrificans BC] gi|330824956|ref|YP_004388259.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117438|gb|ADU99926.1| regulatory protein LuxR [Alicycliphilus denitrificans BC] gi|329310328|gb|AEB84743.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 264 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 39/105 (37%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + + + ++ L++RE L++ G Sbjct: 159 QAVLQVANGGASITPHLARRLLQRFDRAAAPATHEQQQDERETERLSQREKEVLRMVASG 218 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 YTS EI +L +S TVN ++ + KL R QA+ A G Sbjct: 219 YTSAEIGTRLLISSLTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 263 >gi|254507717|ref|ZP_05119849.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 16] gi|219549414|gb|EED26407.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 16] Length = 196 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 11/138 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156 L + V ++ + ++E + Sbjct: 54 LNALRADGCDATIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVELLKVSLRGNKAY 113 Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + +L + + LT+RE L+ GY +++IA+ L +S TV ++ S Sbjct: 114 SKEVAKYLADRENSTDVFDELTDREMQILKEVAKGYRNKQIADTLFISESTVKVHMKSLL 173 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL +R A + Sbjct: 174 KKLSVPSRTAATVMYLER 191 >gi|160898821|ref|YP_001564403.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364405|gb|ABX36018.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 259 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 35/73 (47%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 E ++ A L+ RE L++ GYTS EI +L +S TVN ++ + KL Sbjct: 186 AEPKRRTPDEADRLSTREREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRT 245 Query: 221 RIQAIAKAIRFGY 233 R QA+ A G Sbjct: 246 RAQAVRFASLRGL 258 >gi|309791797|ref|ZP_07686284.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308226119|gb|EFO79860.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 209 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L +++ LTERE L+L +G + EIAE+L +S+ TV ++ + +KL Sbjct: 134 QALVHASQQAQETEVLTERERDVLKLLVEGLNNAEIAERLVVSLSTVKYHISNILMKLGV 193 Query: 219 VNRIQAIAKAIRFGYI 234 NR+ A+ KAI+ + Sbjct: 194 DNRVAAVTKAIQKKMV 209 >gi|256389850|ref|YP_003111414.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356076|gb|ACU69573.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 229 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 42/96 (43%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + +++ A GA +A +L+ RE L+L G+++ EIA+K Sbjct: 128 DPAVQRQLLAAATGANTGTGNGTPTAPAAEPESADDLSPREADVLRLIAAGHSNREIAKK 187 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L + TV +++ K +R QA+ A GY Sbjct: 188 LFVGEATVKSHINRIFTKTGCRDRAQAVQYAFTHGY 223 >gi|269124429|ref|YP_003297799.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309387|gb|ACY95761.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 244 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GYV+ + L G A +I +LE ++ LT RE Sbjct: 127 AGAAGYVLKSLADRDLVQACRAAVRGEPFLYPGAISVLIRSYLEQARQGEEPETPLTPRE 186 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G++S EIA+ L +SV TV + + KL +R++ AIR G I Sbjct: 187 EEILKLVAEGHSSREIADTLFISVKTVERHRANILAKLGMKDRLELTRYAIRTGLI 242 >gi|75910296|ref|YP_324592.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704021|gb|ABA23697.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 237 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG ++ IAEKL +SV TV ++ + KL +R Q +A+R G Sbjct: 175 PLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIAVRALRAG 234 Query: 233 YI 234 + Sbjct: 235 LV 236 >gi|317126112|ref|YP_004100224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590200|gb|ADU49497.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 217 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 G++ + LA V A G + + R A LT+RE L Sbjct: 100 AGAVGFISKAAPGRELATGVRDAAAGRLVLQSQLLARVLRPRGPANDGVMLTDRERQVLS 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG + EIA++L +S TV + S KL A +R +A+ KA+ G I Sbjct: 160 LLVDGLHNREIADRLHISSRTVERHCDSLYGKLGAGSRTEAVVKALSHGII 210 >gi|119717865|ref|YP_924830.1| two component LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119538526|gb|ABL83143.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 215 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 7/123 (5%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVI------IEAHGACYQVITDFLELFKKRSSAA 171 + +R G E ++ A + + A +++ + ++ + A Sbjct: 90 VYQAMRAGAAGFLLKDMAGEDIVAAVRQVAHGADALLAPAVTRRLVDRYTRERRRPPAPA 149 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G ++ EIA +L + TV ++ +KL +R+QA+ A Sbjct: 150 LDQLTPREHDVLRLIAAGLSNAEIAAELFIGETTVKTHVARVLMKLRLRDRVQAVVLAYE 209 Query: 231 FGY 233 G Sbjct: 210 SGL 212 >gi|302552868|ref|ZP_07305210.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470486|gb|EFL33579.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 268 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----------KRSSAAR 172 L +G+++ L + V + A G + L + + Sbjct: 94 LHAGASGFLLKDVRRDDLVHAVRVVAQGDSLLAPSVARRLVEQYTRPGAARPRRPDPRLD 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 154 VLTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|37676847|ref|NP_937243.1| response regulator [Vibrio vulnificus YJ016] gi|326424276|ref|NP_762663.2| nitrate/nitrite response regulator protein [Vibrio vulnificus CMCP6] gi|37201391|dbj|BAC97213.1| response regulator [Vibrio vulnificus YJ016] gi|319999662|gb|AAO07653.2| Nitrate/nitrite response regulator protein [Vibrio vulnificus CMCP6] Length = 210 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156 L + + V ++ + ++E + V Sbjct: 71 LRADGCEASIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVELLEKAHLGDKAYSSV 130 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L ++ + LTERE LQ G+ +++IA++L +S TV ++ S KL Sbjct: 131 VAKYLLQREENTDVFDELTERERQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 190 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 191 KVPSRTAATVLFLER 205 >gi|17232127|ref|NP_488675.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133772|dbj|BAB76334.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 219 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L G + EIA++L +S TV ++ + +L+ +R QA A Sbjct: 154 LTPREKEVLRLIAAGANNREIAQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 208 >gi|158317365|ref|YP_001509873.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112770|gb|ABW14967.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 347 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 8/228 (3%) Query: 9 KKSSSLQELS-PRLHLIQNRIKARNFALY--TINSALDFPRRQQLICELHNYDLDSGDIP 65 ++++SL L + + R+ A + + A R + Sbjct: 109 ERAASLPAFREAALDGMARHLGYRHSAFFLGSSPQATFQDARPTGRGLALRMAGPFLERY 168 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L E + D + I E +L R A + + G Sbjct: 169 RSL-EVFNDPESLRLMWERGLVTLDEIGVPDRPEVRLRL-ERFLRAHGIHAKLLIRLAGG 226 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCL 182 V + + + L + + + L+ RE + Sbjct: 227 SGVGAVVSLLDPRPGAFGPRDRAVGAVLARHLGNLLRFYIRVNPGPAVTAKLSARERDVV 286 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +L +G ++ ++AE L +S+ TV +L A V NR Q R Sbjct: 287 RLVAEGQSNRQVAEALCISIDTVKHHLTHALVATGCSNRTQLALAWQR 334 >gi|113476331|ref|YP_722392.1| LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110167379|gb|ABG51919.1| transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 87 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 40/63 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE ++L DG T+E+IA +L +S TV+ ++ + K NR++ + A+++G Sbjct: 11 SLSERELQVIELVADGLTNEKIASRLEISKRTVDNHISNILSKTSTHNRVELVRWALQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|320449580|ref|YP_004201676.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] gi|320149749|gb|ADW21127.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] Length = 217 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + + A EV+++A ++I DF + L+ERE L+L G Sbjct: 107 DASELIGAIRRVHAGEVLLDAE-LAGRIIQDFRAKKESSLPLHAELSEREIQILKLVAQG 165 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 YT+ EIA +L LS TV L KL NR QA AIR G Sbjct: 166 YTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210 >gi|313764565|gb|EFS35929.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313807407|gb|EFS45894.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313816106|gb|EFS53820.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818453|gb|EFS56167.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820216|gb|EFS57930.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313822975|gb|EFS60689.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827995|gb|EFS65709.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|314915562|gb|EFS79393.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918484|gb|EFS82315.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314919972|gb|EFS83803.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314925444|gb|EFS89275.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931985|gb|EFS95816.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314955854|gb|EFT00254.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958335|gb|EFT02438.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314960110|gb|EFT04212.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314978316|gb|EFT22410.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314987819|gb|EFT31910.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990039|gb|EFT34130.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315084426|gb|EFT56402.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315085766|gb|EFT57742.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315088816|gb|EFT60792.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315098426|gb|EFT70402.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101218|gb|EFT73194.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315108440|gb|EFT80416.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327332048|gb|EGE73785.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327453760|gb|EGF00415.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328753578|gb|EGF67194.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] Length = 218 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|228925473|ref|ZP_04088567.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944022|ref|ZP_04106406.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815693|gb|EEM61930.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834218|gb|EEM79761.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 214 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA Sbjct: 145 PEQLAQLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIY 204 Query: 228 AIRFGY 233 A+R+G Sbjct: 205 AVRYGI 210 >gi|126657363|ref|ZP_01728522.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126621350|gb|EAZ92062.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 210 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Query: 159 DFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L L + L+ERE L+L +G ++ EIAE L LS +T+ ++ Sbjct: 129 ARLVLDNLKPPTPEPNQNIALLSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGI 188 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 189 MNKLAVDDRVQAAVVALRSGLV 210 >gi|15896845|ref|NP_350194.1| regulatory protein [Clostridium acetobutylicum ATCC 824] gi|15026710|gb|AAK81534.1|AE007857_7 Regulatory protein related to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325511019|gb|ADZ22655.1| Positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 862 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L++ DG +++EI L +S+ TV ++ + KL NR+QA+ KA Sbjct: 800 LSERELEVLEVLCDGNSNKEIGSILNISLSTVKTHMINIYSKLHVSNRLQAVEKAKELNL 859 Query: 234 I 234 + Sbjct: 860 L 860 >gi|311695311|gb|ADP98184.1| regulatory protein, LuxR [marine bacterium HP15] Length = 900 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + E+ + A ++ERE L+L G +++EIA+KL +S+HTV + KL+ Sbjct: 825 ELREVAGTLDTLAEPISEREQGVLELIAKGLSNQEIADKLHISLHTVKTHARRINAKLEV 884 Query: 219 VNRIQAIAKAIRFGYI 234 +R QAI +A G + Sbjct: 885 KSRTQAIVRARELGLL 900 >gi|302538376|ref|ZP_07290718.1| predicted protein [Streptomyces sp. C] gi|302447271|gb|EFL19087.1| predicted protein [Streptomyces sp. C] Length = 516 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 36/89 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + V T E ++ LT RE +L G + IA +L +SV TV Sbjct: 421 RLLTRLLSTYVRTAPREPRPAPATTPDGLTPRELEIWRLLARGLDNAAIAAELDISVSTV 480 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R QA+ A G + Sbjct: 481 KNHITAVFGKLGVRDRAQAVIAAYETGLV 509 >gi|226306620|ref|YP_002766580.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229493687|ref|ZP_04387472.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226185737|dbj|BAH33841.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229319648|gb|EEN85484.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 219 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 37/70 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ LTERE L G ++ EIA++L LS T+ +++G KLD +R+QA Sbjct: 146 RRDPVVLDVLTEREREVLGHVATGLSNIEIAQQLYLSESTIKSHVGRILTKLDLRDRVQA 205 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 206 VVLAYETGLV 215 >gi|218514607|ref|ZP_03511447.1| autoinducer transcriptional regulator protein [Rhizobium etli 8C-3] Length = 161 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 8/162 (4%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 LP W ++ + + V + + G + PV + + + Sbjct: 1 KQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSMNAR 57 Query: 138 FLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 ++ + + + + L+ RE CL G + Sbjct: 58 IPADDWAELVRRCRNEWIEIAHLIHQKAVYELYGENDPVPALSPREIECLHWTALGKDYK 117 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +I+ LG+S HT YL +A KL A ++A++ I Sbjct: 118 DISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 159 >gi|254392737|ref|ZP_05007910.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294811849|ref|ZP_06770492.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440412|ref|ZP_08215146.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706397|gb|EDY52209.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324448|gb|EFG06091.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 214 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFK--KRSSAARNLTERE 178 +R G Y E L A + H +V L + + LTERE Sbjct: 98 LRAGASGYVYKDIDPEALAGAIRSVHAGHVLLQPEVAGALLAQEEQGGGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212 >gi|56751843|ref|YP_172544.1| transcriptional regulator [Synechococcus elongatus PCC 6301] gi|81301073|ref|YP_401281.1| LuxR family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686802|dbj|BAD80024.1| transcriptional regulator [Synechococcus elongatus PCC 6301] gi|81169954|gb|ABB58294.1| transcriptional regulator, LuxR family [Synechococcus elongatus PCC 7942] Length = 91 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L+ERE + L G T++EIA +L +S TV+ ++ + K NR+ + A Sbjct: 8 PVSGALSERELQIVDLVAAGLTNQEIATRLDISKRTVDNHISNILTKTGTDNRVALVRWA 67 Query: 229 IRFGYIC 235 +++G +C Sbjct: 68 LQWGKVC 74 >gi|320011731|gb|ADW06581.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + + L + + A G + L + A Sbjct: 97 LRAGASGFLLKDAPAVELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEEPVPDALH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|297582619|ref|YP_003698399.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141076|gb|ADH97833.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 208 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + ++ LT+RE L L G+G +++EIA+ L ++V TV ++ KLD Sbjct: 133 MYRRFQER--PKHDVLTKREREVLALLGEGKSNQEIADTLFIAVKTVKTHVSHILAKLDL 190 Query: 219 VNRIQAIAKAIRFGY 233 +R QA A + Sbjct: 191 QDRTQAAIYANKHQL 205 >gi|220905737|ref|YP_002481048.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219862348|gb|ACL42687.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 100 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 40/64 (62%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L++RE ++L G ++++IAEKL +S TV+ ++ + K NR+ + A+++ Sbjct: 10 QSLSDRELQVIELIAAGLSNQQIAEKLEISKRTVDNHVSNILEKTKTGNRVALVRWAVQW 69 Query: 232 GYIC 235 G +C Sbjct: 70 GKVC 73 >gi|218440594|ref|YP_002378923.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218173322|gb|ACK72055.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 90 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 39/63 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE ++L +G T+ EIA +L +S TV+ ++ + K NR++ + A+++G Sbjct: 11 SLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|320158939|ref|YP_004191317.1| nitrate/nitrite response regulator protein [Vibrio vulnificus MO6-24/O] gi|319934251|gb|ADV89114.1| nitrate/nitrite response regulator protein [Vibrio vulnificus MO6-24/O] Length = 204 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156 L + + V ++ + ++E + V Sbjct: 65 LRADGCEASIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVELLEKAHLGDKAYSSV 124 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L ++ + LTERE LQ G+ +++IA++L +S TV ++ S KL Sbjct: 125 VAKYLLQREENTDVFDELTERERQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 184 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 185 KVPSRTAATVLFLER 199 >gi|302543091|ref|ZP_07295433.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302460709|gb|EFL23802.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 34/66 (51%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L+L DG ++ EIA L +S TV ++ KLD +R+QA+ Sbjct: 152 TPHDNPLTPRELEVLRLIADGRSNSEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVY 211 Query: 228 AIRFGY 233 A R G Sbjct: 212 AYRQGL 217 >gi|270293402|ref|ZP_06199611.1| DNA-binding response regulator [Streptococcus sp. M143] gi|270278251|gb|EFA24099.1| DNA-binding response regulator [Streptococcus sp. M143] Length = 199 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|229165197|ref|ZP_04292990.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] gi|228618295|gb|EEK75327.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] Length = 214 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R Sbjct: 139 AVECNPPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDR 198 Query: 222 IQAIAKAIRFG 232 QA A+R+G Sbjct: 199 TQAAIYAVRYG 209 >gi|323491776|ref|ZP_08096951.1| response regulator [Vibrio brasiliensis LMG 20546] gi|323313911|gb|EGA67000.1| response regulator [Vibrio brasiliensis LMG 20546] Length = 210 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L A + V ++ + ++E Q Sbjct: 71 LRADGCDAAIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVELLRVSLQGNKAYSRE 130 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +LE + + LT+RE L+ G+ +++IA+ L +S TV ++ S KL Sbjct: 131 VAKYLEDRENSTDIFDELTDRELQILKEVAKGFRNKQIADTLFISESTVKVHMKSLLKKL 190 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 191 QVPSRTAATVLYLER 205 >gi|239931777|ref|ZP_04688730.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 182 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 8/91 (8%) Query: 151 GACYQVITDFLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 G V+ ++ L + + A+ LTERET L+L G + ++IAE+L +S Sbjct: 89 GLAGLVLGEYRRLASEPAGPAQGDDGSKAPRLTERETEVLRLVAKGLSYKQIAERLVISH 148 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR++ + AI G Sbjct: 149 RTVQNHVQNTLGKLQLHNRVELVRYAIERGL 179 >gi|148239235|ref|YP_001224622.1| two component system response regulator [Synechococcus sp. WH 7803] gi|147847774|emb|CAK23325.1| Possible two component system response regulator [Synechococcus sp. WH 7803] Length = 227 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L++ G T++EIA L +S TV ++ S K+ +R QA+ KAI+ Sbjct: 166 PELSDREMEVLKVLSCGMTNKEIAVTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKA 225 Query: 232 GY 233 G Sbjct: 226 GI 227 >gi|108803013|ref|YP_642950.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764256|gb|ABG03138.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 212 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 +GY++ + L + G L ++ R+ L+ RE L L Sbjct: 101 AGASGYLLKDAPREELFAAIRAAMAGESPLDPAVASRLMRRVRTPPENALSGREIEVLDL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA +L +S TV +L KL +R A+ AI+ G I Sbjct: 161 VAQGASNREIARQLWISETTVKTHLLHIYEKLGVADRTAAVTAAIKRGII 210 >gi|16331237|ref|NP_441965.1| response regulator like-protein [Synechocystis sp. PCC 6803] gi|1001413|dbj|BAA10035.1| response regulator like protein [Synechocystis sp. PCC 6803] Length = 89 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 40/66 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +L++RE L L G T++E++E+L +S TV+ ++ + K + NR++ + A+ Sbjct: 8 PPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWAL 67 Query: 230 RFGYIC 235 ++G +C Sbjct: 68 QWGKVC 73 >gi|332668435|ref|YP_004451223.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332337249|gb|AEE54350.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 207 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLA 185 +GYV+ + L + A G Y + + + SS LT RE L L Sbjct: 97 GASGYVLKNVDKEELTEAIRQVAAGRIYFSMEAAAAITGQSSSPVVPILTSREKEVLALI 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T++EIA+ L +S TV+++ + K N I AI G I Sbjct: 157 AEGLTNKEIADHLFISPLTVDSHRKNLLAKFAVKNTASLIKLAIEHGVI 205 >gi|123441372|ref|YP_001005359.1| LuxR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088333|emb|CAL11124.1| LuxR-family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 240 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 19/188 (10%) Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + D L ++P W I + F G F Sbjct: 53 WFEFYTQNNFQFTDPVLLMAAHCIMPFSWDE-----KIIFRWPKLFDMAKEYDVFNGYTF 107 Query: 121 PVRLGFHKNGYVIFTSE-FLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAA--- 171 + + + ++ E L+K ++ + Sbjct: 108 VLHDQNNNLTVLSLMTDKDCNEDIEEKFGKDKGNIQLLLMSTHERLTSLYKDLNNTSIFY 167 Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + RE + A G +EIA LG+ V ++G KL N AI+ Sbjct: 168 KVNRNEIFSTRENEIIYWASVGKAYQEIALILGIKPTAVKHHMGKVVRKLGVTNAKHAIS 227 Query: 227 KAIRFGYI 234 A+ I Sbjct: 228 LAVELQLI 235 >gi|311031417|ref|ZP_07709507.1| germination protein [Bacillus sp. m3-13] Length = 64 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 2 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 60 >gi|291301217|ref|YP_003512495.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570437|gb|ADD43402.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 235 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 41/108 (37%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G++ + LA + A G + LT RE L L Sbjct: 99 AGAAGFLYKDIDPDSLAQAIRSVADGQVIFAREAVTAMTAPAPGPVAALTAREREVLALV 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++ EIA++L ++ TV +L S KL +R QA A+ G Sbjct: 159 AAGRSNREIAKQLSVAEKTVKTHLSSLFRKLGVADRTQAALYAVTHGM 206 >gi|212716361|ref|ZP_03324489.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM 16992] gi|212660614|gb|EEB21189.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM 16992] Length = 228 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 166 DRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 225 Query: 232 GYI 234 + Sbjct: 226 RIV 228 >gi|87309494|ref|ZP_01091629.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87287802|gb|EAQ79701.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 6/114 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETS 180 NGYV+ L + + A+G + + ++ LT+RE+ Sbjct: 97 GANGYVLKGDPRDRLVDAIHTAANGESAWTRDELRRVTGALATPRLNADVEVPLTQRESE 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G T++EIA+ L +S TV ++ K+ +R QA A+R G + Sbjct: 157 VLRQLALGLTNKEIAQALHISYETVKEHVQHILRKVGVSDRTQAAVWAVRKGLV 210 >gi|258510399|ref|YP_003183833.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477125|gb|ACV57444.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + S A L+ RET L L GYT+ E+A+ L +SV TV + Sbjct: 127 YLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQ 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 ++ +R + A + G + Sbjct: 187 HIMRRIGLHSRAALVRYAYQNGLV 210 >gi|254391866|ref|ZP_05007060.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294816214|ref|ZP_06774857.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|326444547|ref|ZP_08219281.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] gi|197705547|gb|EDY51359.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294328813|gb|EFG10456.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LT RE +L G + IA ++ +S TV ++ + KL +R Sbjct: 166 AAGTRPTGVPDGLTPREREVWRLIAAGLDNTGIAAEMFISPSTVKNHITALFAKLQVRDR 225 Query: 222 IQAIAKAIRFGYI 234 QA+ A G + Sbjct: 226 AQAVIAAYEAGLV 238 >gi|148977018|ref|ZP_01813664.1| response regulator [Vibrionales bacterium SWAT-3] gi|145963678|gb|EDK28939.1| response regulator [Vibrionales bacterium SWAT-3] Length = 210 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + +IE + V+ +L Sbjct: 81 VILTVSDSPADIEAIVKAGADGYLLKDTEPDELIELLKQAHSGDKAYSSVVARYLNDAGS 140 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LTERE LQ GY +++IA+ L +S TV ++ S KL +R A Sbjct: 141 RNDIFDQLTEREMQILQEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATV 200 Query: 227 KAIRF 231 + Sbjct: 201 LYLER 205 >gi|260886222|ref|ZP_05897485.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC 35185] gi|330839784|ref|YP_004414364.1| two component transcriptional regulator, LuxR family [Selenomonas sputigena ATCC 35185] gi|260863941|gb|EEX78441.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC 35185] gi|329747548|gb|AEC00905.1| two component transcriptional regulator, LuxR family [Selenomonas sputigena ATCC 35185] Length = 223 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S + LT RE L G+++++IA+ L +S TV +L + KL+ +R QA+ Sbjct: 153 RESRSERLTSREMDVLSCIAKGFSNQDIAQALFVSEKTVKNHLTNIFRKLNVNDRTQALI 212 Query: 227 KAIRFGY 233 ++ Sbjct: 213 YVLKHKI 219 >gi|182437898|ref|YP_001825617.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778534|ref|ZP_08237799.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466414|dbj|BAG20934.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658867|gb|EGE43713.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A G Sbjct: 158 KLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|288940789|ref|YP_003443029.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896161|gb|ADC61997.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 238 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E G + + S A +LT RE L +G +++ IA +LG+S TV Sbjct: 126 ELTGVLARAVRGESTPVPVVSGGAADLTPREQEILCHLAEGQSNKTIARELGISEGTVKL 185 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KLD +R++A A+ G Sbjct: 186 HVKAILRKLDVHSRVEAAVIAVERGL 211 >gi|189439534|ref|YP_001954615.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189427969|gb|ACD98117.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 248 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 242 Query: 229 IRFGYI 234 + Sbjct: 243 YENHLV 248 >gi|170782478|ref|YP_001710811.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157047|emb|CAQ02220.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 212 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 8/139 (5%) Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFH-------KNGYVIFTSEFLMLANEVIIEAHGACYQ 155 + AG + F V+ + + + +I Sbjct: 70 FDLDEYAFAGLRAGASGFLVKDTRPEHLMEAIRAVADGDAAISPRVTRRMIELLGPTMPA 129 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 R LT RE L +G T++EIA +L LS TV ++G K Sbjct: 130 TGGAAGTGEGAADPRLRPLTARELEVLTALAEGLTNQEIAGRLFLSESTVKTHVGRVLAK 189 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L+ +R+QA+ A G + Sbjct: 190 LEVRDRVQAVILAYDCGLV 208 >gi|149012406|ref|ZP_01833437.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147763462|gb|EDK70398.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] Length = 199 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 44/92 (47%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGGKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|326381697|ref|ZP_08203391.1| putative two component system response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199944|gb|EGD57124.1| putative two component system response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 213 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 1/103 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + S + ++ A Q+ LT RE L A G ++ Sbjct: 112 FLLASVRAVADGSQVVAASAT-RQLFERHGSRNADPGPEYDTLTAREREILVRAASGLSN 170 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA LS TV ++ KL +R+Q + A G + Sbjct: 171 AEIASAEFLSEATVKTHVSRILAKLSLRDRVQLVVYAYEHGLV 213 >gi|300087810|ref|YP_003758332.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527543|gb|ADJ26011.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 228 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + A LTERE L+LA G ++ + AE+L LS TV +L + KL+ +R Sbjct: 150 REDTESDAPAHALTEREMEVLRLAAKGVSNRDTAEQLYLSSRTVQTHLSNIFKKLNVASR 209 Query: 222 IQAIAKAIRFGY 233 +AI ++ G+ Sbjct: 210 TEAILYGLKRGW 221 >gi|197251701|ref|YP_002148042.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215404|gb|ACH52801.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 248 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 91 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ ++ LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDFLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|23465503|ref|NP_696106.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239621956|ref|ZP_04664987.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326161|gb|AAN24742.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239515147|gb|EEQ55014.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 248 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + GA LT+RE L G +++EIA+KL +S Sbjct: 156 EGDFMAANVGAHGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFIS 215 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV ++ K++A +R+QA+ A + Sbjct: 216 LPTVKTHVAHILAKINARDRVQAVVFAYENHLV 248 >gi|320010051|gb|ADW04901.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 224 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 EKLTGREREVMMLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|329940979|ref|ZP_08290259.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300273|gb|EGG44171.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 255 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 72/237 (30%), Gaps = 40/237 (16%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + + R+ LD Sbjct: 39 VDDHPMWRDAVARDLAESGFDVVATAGDGEQAVRRARAVAPDVLVLDLN--------LPA 90 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ + V + A + V+ G V Sbjct: 91 KPGVQVCKE--------------LVGAQPAPRVLVLSASGEHADVLEAVKSGATGY-LVK 135 Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSA-----------ARNLTE 176 S ++ A G V+ ++ L + + A A LTE Sbjct: 136 SASTEELVDAVRRTAAGDPVFTPGLAGLVLGEYRRLAAEPAPAPESGEAGETARAPRLTE 195 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 196 RETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 252 >gi|312132068|ref|YP_003999408.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311908614|gb|ADQ19055.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 204 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 4/123 (3%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 + ++ V+ G + E + E I + ++ L++ ++ Sbjct: 86 YNERSYVSQMVQAGASGYLLKSASREEM----EEAILTVSSGKLYMSLELDISREEIKKM 141 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L +G T+ +IAE+L +S HTV+++ + K + N I A + Sbjct: 142 PVLTTREREVLVLIAEGLTNPQIAERLFVSPHTVDSHRKNLLTKFEVNNTAGLIKWAAKN 201 Query: 232 GYI 234 G I Sbjct: 202 GLI 204 >gi|306828869|ref|ZP_07462061.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304429047|gb|EFM32135.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 199 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KL+A NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLNAGNRTEAANIATESGWL 199 >gi|312196093|ref|YP_004016154.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227429|gb|ADP80284.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 220 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 166 KRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + A LTERE L L G ++ EIA ++ ++ TV ++ KL+ +R+Q Sbjct: 145 RITPPADLQTLTEREREVLVLIARGLSNTEIAARIYVTEGTVKTHVSRLLAKLNLRDRVQ 204 Query: 224 AIAKAIRFGYI 234 A+ A G + Sbjct: 205 AVVYAYESGLV 215 >gi|260436694|ref|ZP_05790664.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260414568|gb|EEX07864.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] Length = 92 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L+ RE ++L +G T++EIA++L +S TV+ ++ + K + NR+ Sbjct: 5 DGADPLEISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVAL 64 Query: 225 IAKAIRFGYIC 235 + A+ G IC Sbjct: 65 LNWAMDNGKIC 75 >gi|229171060|ref|ZP_04298658.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] gi|228612390|gb|EEK69614.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] Length = 213 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA Sbjct: 143 PPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAI 202 Query: 227 KAIRFG 232 A+R+G Sbjct: 203 YAVRYG 208 >gi|288572798|ref|ZP_06391155.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568539|gb|EFC90096.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 217 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G ++ EI+ K+ LS TV ++ KLD +R QA A R G Sbjct: 152 LTDREKEVLFWLAQGLSNLEISAKMNLSEKTVKNHVSHILKKLDLRDRTQAAILAWRVGI 211 >gi|197301027|ref|ZP_02663122.2| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197288964|gb|EDY28335.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322669031|gb|EFY65182.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] Length = 248 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + ++ + + I +R G + + Sbjct: 91 SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ ++ A LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLASILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|17232908|ref|NP_489446.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134898|dbj|BAB77454.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 237 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG ++ IAEKL +SV TV ++ + KL +R Q +A+R G Sbjct: 175 PLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIAVRALRAG 234 Query: 233 YI 234 + Sbjct: 235 LV 236 >gi|296268935|ref|YP_003651567.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091722|gb|ADG87674.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 221 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 5/103 (4%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V+ + + ++ + L + LT RE L L G ++ Sbjct: 117 VVHSGDAVVAPSTTRRLLDRFAAH-----LPDGQAGRPELDALTAREREVLILVAKGLSN 171 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIAE+L L+ TV +LG KL +R QAI A G + Sbjct: 172 QEIAERLHLAEATVKTHLGRVLAKLRLRDRAQAIVYAYETGLV 214 >gi|239942209|ref|ZP_04694146.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988676|ref|ZP_04709340.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445663|ref|ZP_06585053.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348610|gb|EFE75514.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A G Sbjct: 158 KLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|239906056|ref|YP_002952795.1| NarL family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239795920|dbj|BAH74909.1| NarL family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 218 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ ++ SA +LT RE ++L +G +++E+A L +SV T + GS Sbjct: 135 ISRSLLAKTPRAEEESHSAYDSLTPREREVMRLVVEGLSNKEVAAALEISVKTAEHHRGS 194 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL N ++ + A + G I Sbjct: 195 LMRKLGMQNSVELVRYATKLGLI 217 >gi|237650688|ref|ZP_04524940.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821211|ref|ZP_04597056.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974M2] Length = 199 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + LTE+E + L+ G++++EIA+KL LS Sbjct: 108 ADLMQTLHTVLEGGKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|219683473|ref|YP_002469856.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|219621123|gb|ACL29280.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|289178826|gb|ADC86072.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 234 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LTERE L G +++EIA+KL +S+ TV ++ K++A +R+ Sbjct: 163 AAEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRV 222 Query: 223 QAIAKAIRFGYI 234 QA+ A + Sbjct: 223 QAVVFAYENHLV 234 >gi|218289507|ref|ZP_03493735.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218240375|gb|EED07557.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 210 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 39/79 (49%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ E + + LT RE+ L+ G +++EIA++L +S TV A+L Sbjct: 131 AMLKALQEPDAEEAKRLAQLTPRESQILRQVTKGLSNKEIADRLQISERTVKAHLQHIFD 190 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL +R A AIR G+ Sbjct: 191 KLGVQDRTSAAVLAIRHGW 209 >gi|149004513|ref|ZP_01829227.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147757571|gb|EDK64593.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] Length = 189 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + LTE+E + L+ G++++EIA+KL LS Sbjct: 98 ADLMQTLHTVLEGGKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 157 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 158 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 189 >gi|291483274|dbj|BAI84349.1| hypothetical protein BSNT_01381 [Bacillus subtilis subsp. natto BEST195] Length = 220 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++R+G Sbjct: 158 LTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216 >gi|78356024|ref|YP_387473.1| two component LuxR family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218429|gb|ABB37778.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 223 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS+ LT RE QL +GY + EIAE L +SV TV + + KL + + A Sbjct: 150 SSSWETLTPREQEIFQLVAEGYKNREIAEMLVVSVKTVEKHRSNLMQKLGVHSAAELRAL 209 Query: 228 AIRFGYI 234 A+ G I Sbjct: 210 ALERGII 216 >gi|27382386|ref|NP_773915.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355557|dbj|BAC52540.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 123 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 43/88 (48%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + Q + + LT+RE L L +G +++ IA +LG+SVHTV Sbjct: 34 LRLAAPGEQAAATIVARDPRSMPEDIALTQRELDVLALMAEGASNKMIARQLGISVHTVK 93 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++GS KLDA R A+A A R G I Sbjct: 94 FHVGSLLDKLDATGRTDAVAHAARRGVI 121 >gi|315080757|gb|EFT52733.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] Length = 228 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|302866747|ref|YP_003835384.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302569606|gb|ADL45808.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 225 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + +A +LT RE L+L G ++ EIA+ L + TV ++ Sbjct: 139 ISTFARPGAAPPDPRHDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSR 198 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA+ A G + Sbjct: 199 VLAKLGLRDRVQAVVFAYEHGVV 221 >gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 234 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 70/226 (30%), Gaps = 11/226 (4%) Query: 14 LQELSPRLHLIQNRIKARNFAL-YTINSALDFP--RRQQLICELHNYDLDSGDIPNILIE 70 + + +Q ++ NF + N + ++ + + + D L + Sbjct: 12 VDDEPGLREAVQAYLEDSNFNVDVASNGREGWELLQKNPPDLVISDIMMPQVDGYQFLSQ 71 Query: 71 TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D +P+++ + + + + + P +A L Sbjct: 72 MREDPRFKA-----MPVVFLTAKGMTTDRIQGYQAGCDAYISKPFDPDELVAIVTNLLVR 126 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + +T + + S +LT RE S L L Sbjct: 127 RAAAKESGENTETPDITALANQMARIESFLTGRSAIAQSPSPIKIDLTPREQSVLDLVAQ 186 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA +L SV V Y+ K +R + + A+ G Sbjct: 187 GLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 232 >gi|317049512|ref|YP_004117160.1| LuxR family transcriptional regulator [Pantoea sp. At-9b] gi|316951129|gb|ADU70604.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 262 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 I ++N + + D + + + IW + + ++ + Sbjct: 57 ILVINNISDEFANEYLENKYQNIDPVVITALNRVTSFIWDANLKINSHWPMDKVFIWKSY 116 Query: 111 GLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAH--------GACYQVITDFL 161 L G F + + ++ ++LM +IE H ++++ Sbjct: 117 SFL--CGHTFVLHDYHNNMATLSLYYDKYLMADVGDMIETHKNDFQGILLDIHEMLLQVY 174 Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ ++A L+ RE L + G T E+AE L L+V T+ ++G KL N Sbjct: 175 RKSEEVAAANTLLSTREAEILYWSSTGKTYAEVAEMLQLTVSTIKFHMGKTVKKLGVKNA 234 Query: 222 IQAIAKAIRFGYI 234 AI+ A I Sbjct: 235 KHAISLASELNLI 247 >gi|226310364|ref|YP_002770258.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093312|dbj|BAH41754.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 24/133 (18%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAH--------GACYQVITDFLELFKKRSSAA----- 171 GY++ ++I AH + + + L+ +K Sbjct: 103 RAGAVGYMLKD-SDSQDMLDLIRRAHQGEALFYTATAAKALAEVLQFQQKNYEPDSDADC 161 Query: 172 ----------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+ G +++IA+ L +S TV ++ K+ +R Sbjct: 162 DSTLPPLVMFDQLTDRERDVLEQLSYGKRNDQIAQHLLISGGTVKTHIHRILQKMGVEDR 221 Query: 222 IQAIAKAIRFGYI 234 QA+AKAIR+ + Sbjct: 222 TQAVAKAIRYKIV 234 >gi|329940703|ref|ZP_08289983.1| two component response regulator [Streptomyces griseoaurantiacus M045] gi|329299997|gb|EGG43895.1| two component response regulator [Streptomyces griseoaurantiacus M045] Length = 213 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERE 178 +R G Y + L A + H + L + A A LTERE Sbjct: 97 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDTGPAQGRAGTLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 210 >gi|323139047|ref|ZP_08074106.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322395707|gb|EFX98249.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 261 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 1/223 (0%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ EL L I + + + S+ + ++ + Sbjct: 39 ATADELGDSLLEITSPLGVEAIVAGVLPSSANHHMDHGDEKTPGHWPALLTREALAQNKL 98 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + + + E I FP+ Sbjct: 99 QSELLIDLEKQTTHIFTRDAATGEASHLRFVYARDNDAEAWPDGERIVFPIVTVADMQCG 158 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 F E L + +++ + + LT+R++ L+ A G T Sbjct: 159 FAFLGENLSRDETAMEILSFIANYAFARMVKVD-RMCKSKPKLTDRQSEVLKWAALGKTD 217 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L +S HTV+ Y+ + L+AVNR AI A+R+G I Sbjct: 218 WEIAAILDVSQHTVDKYMRQSKEALNAVNRTAAIVLAMRYGLI 260 >gi|289425275|ref|ZP_06427052.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289154253|gb|EFD02941.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|313792254|gb|EFS40355.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313838624|gb|EFS76338.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|315078129|gb|EFT50180.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|327453031|gb|EGE99685.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] Length = 218 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|258651449|ref|YP_003200605.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554674|gb|ACV77616.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 198 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 51/156 (32%), Gaps = 2/156 (1%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 G P I + + S + + RL I F I Sbjct: 42 RFGRQPSDVVLIGTQRALTSGIEATRRLLAVHPSAVVIVFGSPDDTASIAAAIACGARGF 101 Query: 141 LANEVII--EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L + + T L + LTERE L+ G ++ EI +L Sbjct: 102 LRWDATQPEIVAALADTLTTPRLPALRDTPDGEAPLTEREMQVLRGMSQGQSNGEIGREL 161 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV + KL A +R QA+A R G++ Sbjct: 162 FLSEDTVKTHARRLFRKLGARDRAQAVALGFRRGFV 197 >gi|228912956|ref|ZP_04076601.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983471|ref|ZP_04143682.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229119881|ref|ZP_04249141.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228663628|gb|EEL19208.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228776261|gb|EEM24616.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846694|gb|EEM91701.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 214 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA Sbjct: 145 PEQLAQLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIY 204 Query: 228 AIRFGY 233 A+R+G Sbjct: 205 AVRYGI 210 >gi|116694705|ref|YP_728916.1| LuxR family transcriptional regulator [Ralstonia eutropha H16] gi|113529204|emb|CAJ95551.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16] Length = 920 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 7/147 (4%) Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLANEVIIEA 149 + T + + + G + + + + L + Sbjct: 775 QRTGDGAHALVVMGEALRFGAAEGF-VRIFADEGDDVRRLVADACSRQSASLPAPYVERL 833 Query: 150 HGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 AC Q ++ + + AA LT +E LQL +GY++ +AE+L +S TV Sbjct: 834 LQACGQAGSEQAAGTGRPAPAALVEPLTPKEQKVLQLLAEGYSNVAMAERLFVSETTVRT 893 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L + + KL A NR QA+A A + G + Sbjct: 894 HLRNISAKLHASNRTQAVAIARQLGLL 920 >gi|85858979|ref|YP_461181.1| two-component response regulator [Syntrophus aciditrophicus SB] gi|85722070|gb|ABC77013.1| two-component response regulator [Syntrophus aciditrophicus SB] Length = 217 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL +G ++++IA L +SV TV + + T KL + + I AIR G Sbjct: 152 ELTPRERELLQLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIKYAIREG 211 Query: 233 Y 233 Sbjct: 212 L 212 >gi|260430667|ref|ZP_05784639.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] gi|260418108|gb|EEX11366.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] Length = 204 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A+ LTERE L+ +G +++EIA L LS T+ ++ + K+ NR QA Sbjct: 136 DTHPMAKKLTERERQVLKGLTEGKSNKEIARDLDLSEPTIKLHVKTLYRKVGVSNRTQAA 195 Query: 226 AKAIRFGY 233 A G Sbjct: 196 MAAREAGL 203 >gi|212716971|ref|ZP_03325099.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] gi|212660256|gb|EEB20831.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] Length = 248 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + GA LT+RE L G +++EIA+KL +S Sbjct: 156 EGDFMAANVGAHGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFIS 215 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV ++ K++A +R+QA+ A + Sbjct: 216 LPTVKTHVAHILAKINARDRVQAVVFAYENHLV 248 >gi|219849447|ref|YP_002463880.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543706|gb|ACL25444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus aggregans DSM 9485] Length = 917 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L+L +G ++ EIA L ++V TV +++ + KL +R QA+A+ R Sbjct: 854 EPLSQREIEVLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRTQAVARGRRL 913 Query: 232 GYI 234 G I Sbjct: 914 GLI 916 >gi|315612509|ref|ZP_07887422.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315315490|gb|EFU63529.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 199 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|134103142|ref|YP_001108803.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003915|ref|ZP_06561888.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915765|emb|CAM05878.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 151 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 2/142 (1%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGAC 153 + + + + + RL I F I L + E A Sbjct: 9 QRAVPNGVEATRRLVSAHPQANVIVFGAPDDAGSIAAAIAGGARGYLRWDASRPELVAAL 68 Query: 154 YQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + ++ S LTERE L+ G ++ +I +L LS TV + Sbjct: 69 AHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRL 128 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA+A R G + Sbjct: 129 FRKLGVRDRAQAVAHGFRRGLV 150 >gi|326332943|ref|ZP_08199200.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325949301|gb|EGD41384.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 38/84 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V L + S LTERE L+L +G+++ EIA +L +S TV + Sbjct: 135 AMSALVRDYLDRLNRGESLPRTVLTEREDEVLKLIAEGHSTREIARELTISYKTVERHRE 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R Q AIR G I Sbjct: 195 NILAKLGLRDRTQVTRYAIRAGLI 218 >gi|269124386|ref|YP_003297756.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309344|gb|ACY95718.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 222 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE ++L G +++EIA +L LS T ++ KL +R Q Sbjct: 145 APAPDPRLNALTEREREVMRLVAAGLSNDEIAGRLVLSPATAKTHVSRIMSKLGVRDRSQ 204 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 205 LVVLAYESGMV 215 >gi|329922778|ref|ZP_08278313.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941920|gb|EGG38204.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 200 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 N Y++ S LA + G + + S LTERE L L Sbjct: 94 AGANAYLLKDSPSEELAASIRSIMAGRRIYASE---LVDEAYSGEENPLTEREKEVLGLI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L ++ TV Y+ KL NRI+AI + G+ Sbjct: 151 ADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEAITRFKEKGW 198 >gi|302873825|ref|YP_003842458.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307689930|ref|ZP_07632376.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302576682|gb|ADL50694.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 220 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 110 GGLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 L G+A R + ++ + E + + Sbjct: 91 DENLIREGLALGARGYLLKDSTREELIRTVEAAIRGELLLQPEISGIIFGAKKESKESNN 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + +TERE LQ G TS+EIA +G++ TV A+L + KL +R QA+A A Sbjct: 151 TFNAGITERELFVLQAVARGCTSKEIAVDMGIAERTVKAHLTNIYSKLKVESRPQAVAVA 210 Query: 229 IRFGYI 234 I G I Sbjct: 211 IEQGII 216 >gi|75812491|ref|YP_320110.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705247|gb|ABA24921.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 223 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R+ + LT RE L L G T++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 151 ENRAKLSNPLTGREQEILSLLAAGKTNQEIAHQLCIAPGTVRVHIHAILQKLEVSDRTQA 210 Query: 225 IAKAIRFGYI 234 + A++ I Sbjct: 211 VLVALQKQLI 220 >gi|121604753|ref|YP_982082.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593722|gb|ABM37161.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 262 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+L GYTS EI +L +S TVN ++ + KL+ R QA++ A Sbjct: 200 EKLSEREKQVLKLVASGYTSTEIGSRLIISGQTVNTHIKNIYRKLNVRTRAQAVSFAASR 259 Query: 232 GY 233 G Sbjct: 260 GL 261 >gi|86739638|ref|YP_480038.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566500|gb|ABD10309.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 297 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 68/230 (29%), Gaps = 12/230 (5%) Query: 9 KKSSSLQELSP-RLHLIQNRIKARNFALYTINSALDF--PRRQQLICELHNYDLDSGDIP 65 +++SSL L + + R+ A + +S R + Sbjct: 59 ERASSLASFRELALDGMARHLGYRHSAFFLGSSLETAFQDARPTGRGLALRLAGPYLERY 118 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV--RLEGGLLPFAGIAFPVR 123 L D L L ++ + V E R A + + Sbjct: 119 RELEALSNPDSLRSVRERGL----ATLDDLGVPERPEVRMRLERFLRAHGIHAKLLIRLF 174 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180 + V + + + L + + A L+ RE Sbjct: 175 GPSNVGAVVSLLDSRPGAFGPRDRAVGAVLGRHLGNLLRFYIRADPGPSVAGKLSARERD 234 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++L +G ++ ++AE L +S+ TV +L A V NR Q R Sbjct: 235 VVRLVAEGRSNRQVAEALCISIDTVKHHLTHALVATGCTNRTQLAIAWQR 284 >gi|304399203|ref|ZP_07381070.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304353257|gb|EFM17637.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 215 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 16/143 (11%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY------- 154 +L L + F V + M +++ H A Sbjct: 72 QLREIALSGRVVVFSVSDNEEDVISALKRGADGYLLKDMEPEDLLKALHQAAAGQIVLSE 131 Query: 155 ----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ E ++ LT RE LQL DG T++ IA KL +S TV ++ Sbjct: 132 ALTPILVARLREAQPGQTRDINQLTRREREILQLISDGMTNKAIARKLDISESTVKVHVK 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 K++ +R++A A++ G Sbjct: 192 YLLKKMNLKSRLEAAVWALQNGL 214 >gi|194735656|ref|YP_002116072.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711158|gb|ACF90379.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|322613521|gb|EFY10462.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621113|gb|EFY17971.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624177|gb|EFY21011.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628084|gb|EFY24873.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633204|gb|EFY29946.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636219|gb|EFY32927.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639557|gb|EFY36245.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647511|gb|EFY44000.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648694|gb|EFY45141.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653749|gb|EFY50075.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657855|gb|EFY54123.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663958|gb|EFY60157.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322672975|gb|EFY69082.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678034|gb|EFY74097.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681210|gb|EFY77243.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687860|gb|EFY83827.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323191760|gb|EFZ77011.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199648|gb|EFZ84738.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202605|gb|EFZ87645.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207908|gb|EFZ92854.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212540|gb|EFZ97357.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214977|gb|EFZ99725.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222707|gb|EGA07072.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224210|gb|EGA08503.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230535|gb|EGA14653.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235114|gb|EGA19200.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239153|gb|EGA23203.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244489|gb|EGA28495.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247104|gb|EGA31070.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253413|gb|EGA37242.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256280|gb|EGA40016.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262544|gb|EGA46100.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267360|gb|EGA50844.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269236|gb|EGA52691.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 227 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 18 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + ++ + + I +R G + + Sbjct: 70 SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ ++ A LT +E + + +G +++ IA +L + Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLASILTAKEREIVGMVCEGASNKLIARQLNI 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215 >gi|312880693|ref|ZP_07740493.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783984|gb|EFQ24382.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 211 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 L GYV+ TS L + + A G + ++ E + ++ RE Sbjct: 91 VLASLKAGARGYVLKTSPAETLCRAIRVVAQG-GLFLDSEVAEAMGGDAFVPEPISPRER 149 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G +S+EIA KL +S TV +L S K+ A N+ +A+ A+R+G + Sbjct: 150 EVLVQAAQGLSSKEIAAKLYISERTVQTHLASIYDKVGAKNKTEAMLLALRYGLV 204 >gi|307705686|ref|ZP_07642533.1| DNA-binding response regulator [Streptococcus mitis SK597] gi|307620766|gb|EFN99855.1| DNA-binding response regulator [Streptococcus mitis SK597] Length = 199 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS TV Y+ + KLDA NR Sbjct: 127 ELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDASNR 186 Query: 222 IQAIAKAIRFGYI 234 A A G++ Sbjct: 187 TDAANIAKESGWL 199 >gi|290958644|ref|YP_003489826.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648170|emb|CBG71278.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A + A G ++I +F L + + LTERET L Sbjct: 109 DASADQLAEAVRVVAAGDALLAPGVTRRLIAEFSRLGTAPRAPLKERVGDLTERETEVLS 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA+ L ++ TV ++G VKL +R QA A G + Sbjct: 169 LIAQGLSNAEIAQSLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219 >gi|159901290|ref|YP_001547537.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894329|gb|ABX07409.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 208 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCL 182 L GY++ + L + + A G+ + +L S +LT RE L Sbjct: 94 LRAGAKGYLLKDASADELVSAIQAVARGSTHLAPDIAAKLVAGVSNPQPESLTPRELEVL 153 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G G ++ EIA +L +++ TV ++ + KL A NR +A++ A+R I Sbjct: 154 HLLGRGRSNGEIALELDIALRTVKVHVQNILGKLGATNRTEAVSIAVRQQLI 205 >gi|226860311|gb|ACO88865.1| transcriptional regulatory protein [Microbacterium sp. MA1] Length = 228 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS 168 + L G+++ S L V +V+ F +++ Sbjct: 98 DDVLLSRVLRAGAAGFILKDSPAEALIWAVRAVVRDGAFLDPAVTERVLQGFRRAGREQV 157 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A LT+RE+ L+L G T+ EIA LG+S TV +++ KLD +R AI A Sbjct: 158 PVAPELTDRESDVLRLIARGQTNTEIASTLGISSVTVKSHVNHIFTKLDLRDRAAAIVYA 217 Query: 229 IRFGYI 234 G + Sbjct: 218 FDHGLV 223 >gi|254382255|ref|ZP_04997616.1| two component system DNA binding response regulator [Streptomyces sp. Mg1] gi|194341161|gb|EDX22127.1| two component system DNA binding response regulator [Streptomyces sp. Mg1] Length = 210 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 51/109 (46%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G L L + + A LT+RE LQL Sbjct: 99 AGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLV 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++++I+++L LS TV ++L KL +R A+A A I Sbjct: 159 ADGLSNQQISKELFLSQATVKSHLVHIYAKLGVDSRTSAVATAATRRLI 207 >gi|62181634|ref|YP_218051.1| response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129267|gb|AAX66970.1| putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 227 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 18 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G H + + Sbjct: 70 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHHIIAGISLMR-DIP 128 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215 >gi|302533688|ref|ZP_07286030.1| two-component system response regulator [Streptomyces sp. C] gi|302442583|gb|EFL14399.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Query: 151 GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +V L +S LT+RE L L DG ++ EIA L LS TV Sbjct: 132 LLQPEVAEALLAAQDDQSGPGGRPGSLTDREREVLGLIADGRSNREIARTLVLSEKTVKT 191 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + +KLD +R QA A+R G Sbjct: 192 HVSNILMKLDLSDRTQAALWAVRHGI 217 >gi|113953858|ref|YP_731807.1| LuxR family transcriptional regulator [Synechococcus sp. CC9311] gi|113881209|gb|ABI46167.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CC9311] Length = 83 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE ++L +G T++EIAE+L +S TV+ ++ + K + NR+ + A+ G Sbjct: 4 SLSSREIEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDHG 63 Query: 233 YIC 235 IC Sbjct: 64 KIC 66 >gi|158312391|ref|YP_001504899.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158107796|gb|ABW09993.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 219 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++ + A LT+RE L+ +G ++ EIA L LSV TV ++ KL Sbjct: 135 LARRRVPDRELLTRADQLTDREAEVLRALAEGRSNTEIAAVLNLSVETVRTHVKRILSKL 194 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+ A R G++ Sbjct: 195 GVRDRTQAVVWAYRAGFV 212 >gi|218437802|ref|YP_002376131.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218170530|gb|ACK69263.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 228 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 36/58 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE LQ G ++E+IA++L ++V TV A+L + KL NR QAI A++ Sbjct: 163 LTKREKEVLQYLIQGLSNEQIAKQLYITVATVKAHLTAIFNKLGVKNRTQAIVAALKM 220 >gi|315503162|ref|YP_004082049.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315409781|gb|ADU07898.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 225 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + +A +LT RE L+L G ++ EIA+ L + TV ++ Sbjct: 139 ISTFARPGAAPPDPRHDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSR 198 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA+ A G + Sbjct: 199 VLAKLGLRDRVQAVVFAYEHGVV 221 >gi|261867392|ref|YP_003255314.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412724|gb|ACX82095.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D11S-1] Length = 209 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I + ++ + Sbjct: 72 LRAEGVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIARGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + +LT+RE L+L G ++++IA +L +S TV ++ + KL Sbjct: 132 IKNLLLERQSAQEPIYSLTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A Sbjct: 192 NVHSRVAATVLYFEH 206 >gi|227547703|ref|ZP_03977752.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227080229|gb|EEI18192.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 212 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + S+ +LT RE LQL Sbjct: 104 AGAVGYLLKDAPPAELVAAVRSAARGDAALSQVVRTRLETRESTPRFSLTPRELEVLQLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNREIGHELMLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGML 212 >gi|163744865|ref|ZP_02152225.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161381683|gb|EDQ06092.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 245 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 23/233 (9%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + LQE+ I ++ F + I+ ++ + L D+P Sbjct: 8 RLEKLQEVGALWDGIVEALRQIGFT-HAIHISVGADFKDA--QFLSTIPDLYDDLPPE-- 62 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEE--TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D FL H + + + S + G +A A P+RL Sbjct: 63 ---DDPFLHHSCNSYEVLTIGQAFVHLYPDVTPSEHSLIARAGREGLYAAFAVPMRLKGS 119 Query: 128 KNGYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSSAAR-------NL 174 + + ++ + C + +L L Sbjct: 120 ERFGGFIIGNGMEADEFKRTFNDIAEDLRLFCLLMHRRIEDLTGTTPLPLPEAPETFAKL 179 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + RE + L GY+ ++ A + LS+HTV+ Y S KL NR QA A Sbjct: 180 SPREAEVVNLLAHGYSRQQTAHRCDLSIHTVSDYAKSGYRKLGIRNRAQAAAL 232 >gi|21224466|ref|NP_630245.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256784341|ref|ZP_05522772.1| two-component system response regulator [Streptomyces lividans TK24] gi|289768220|ref|ZP_06527598.1| two-component system response regulator [Streptomyces lividans TK24] gi|4007689|emb|CAA22374.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289698419|gb|EFD65848.1| two-component system response regulator [Streptomyces lividans TK24] Length = 219 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ LT RET L+L DG ++ EIA L +S TV ++ KLD +R+QA+ Sbjct: 152 TARDIPLTPRETEVLRLIADGLSNSEIAAALVISPETVKTFVSRILTKLDLRDRVQAVVF 211 Query: 228 AIRFGYI 234 A R G + Sbjct: 212 AYRHGLV 218 >gi|307710890|ref|ZP_07647317.1| transcriptional regulatory protein degU [Streptococcus mitis SK321] gi|307617335|gb|EFN96508.1| transcriptional regulatory protein degU [Streptococcus mitis SK321] Length = 199 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G++++EIA+KL LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|269792412|ref|YP_003317316.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100047|gb|ACZ19034.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 227 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++++ F ++R LT RE L G + EIA K+ LS TV ++ Sbjct: 131 VAGKLLSTFNRRREER-DLLSRLTPREMEVLYWISQGLNNGEIARKMVLSEKTVKNHVSH 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KLD V+R QA A + G Sbjct: 190 ILKKLDLVDRTQAAVFAWKRGL 211 >gi|254387068|ref|ZP_05002344.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345889|gb|EDX26855.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 216 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERE 178 +R G Y + L A + H + L + ++ LT+RE Sbjct: 100 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAVALLTQDDQGPSSSRGGALTDRE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 160 REVLSHIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGI 214 >gi|194444321|ref|YP_002042384.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402984|gb|ACF63206.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|322716118|gb|EFZ07689.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326624871|gb|EGE31216.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 227 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 18 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 70 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215 >gi|159044888|ref|YP_001533682.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912648|gb|ABV94081.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 220 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 9/126 (7%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD---------FLELFKKRS 168 + + + + +V+ + + + L + Sbjct: 88 LILSMHDSAEYISTAMSHGARGYILKDVLTDEIRLAIEAVMRGETYMCTGASASLEPNTA 147 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + L G +++E+A L +SV TV + + KL + A Sbjct: 148 DGREPLTSREQTILLQLASGKSNKEVAATLDISVRTVETHRKNIKRKLGISSTAGLTRYA 207 Query: 229 IRFGYI 234 + G + Sbjct: 208 MEHGVL 213 >gi|114765847|ref|ZP_01444940.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114541846|gb|EAU44883.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 204 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQL 184 G++ T L N V A G Y + + + A L+ RE L+ Sbjct: 95 AGAAGFLPKTLSAKSLVNAVRFMAMGEQYAPLDFMRAEEETEVNPLAEKLSPRELEVLEG 154 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA L + TV ++ S K++A NR A A G Sbjct: 155 LTQGKSNKEIARDLDIREPTVKLHVKSLYRKINASNRTHAAMIAKEAGL 203 >gi|294635449|ref|ZP_06713937.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] gi|291091182|gb|EFE23743.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] Length = 202 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA-------HGACYQV 156 L + I V ++ E ++ H + Sbjct: 65 LRNEGVDARIIILTVSDARSDVYALVDAGADGYLLKDSEPETLLAQIHQAAEGHNVFSEA 124 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++L + + +LTERE LQ G ++++IA +L +S TV ++ + KL Sbjct: 125 VLNYLGTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNLLRKL 184 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 185 NVRSRVAATVL 195 >gi|282899592|ref|ZP_06307556.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281195471|gb|EFA70404.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 97 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R+ L++RE + L G T++EIA KL +S TV+ ++ + K NR+ Sbjct: 4 SESRTPVT--LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVA 61 Query: 224 AIAKAIRFGYIC 235 + A+++G +C Sbjct: 62 LVRWALQWGKVC 73 >gi|271962388|ref|YP_003336584.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505563|gb|ACZ83841.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ S L A G + L + R+ A + L+ RE L+L Sbjct: 100 AGATGYLLKDSPREELLRGARAAARGESVLAPSVAARLMNRMRAPAPQLLSPRELEVLEL 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E A +L ++ TV ++L + KL +R A+ +A G + Sbjct: 160 VAAGNTNREAAVRLFITEATVKSHLLNIYTKLGVNDRAAAVTEAFNRGLL 209 >gi|226305875|ref|YP_002765835.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184992|dbj|BAH33096.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 220 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A Sbjct: 155 DALTPREREVLELIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYES 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|264677605|ref|YP_003277511.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262208117|gb|ACY32215.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 195 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G + EI + + +S TV+ ++ + K+ R QA+ A+ Sbjct: 133 EKLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLK 192 Query: 232 GYI 234 G I Sbjct: 193 GII 195 >gi|212638430|ref|YP_002314950.1| GerE family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212559910|gb|ACJ32965.1| Transcriptional regulator GerE family [Anoxybacillus flavithermus WK1] Length = 89 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 27 LTKREREVFELLLQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 85 >gi|167588259|ref|ZP_02380647.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 301 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 68/244 (27%), Gaps = 18/244 (7%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + A + L Sbjct: 60 TLSHAQSTAERNRIVTSLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PATYRGDYV 117 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQS----------IQEETVIESSGQLSVRLEGGLLPFA 116 D +PI+W + +V + ++ + Sbjct: 118 RHSHHDVDPRTLGARVCNMPIVWDLQQLRRQHRQRVDGASVPSGALDGFLQTMQDDGMCS 177 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSA 170 GI + + + + ++ FT+ + G + R Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATVEQALSIGLSVHKFASPQLIATSRERT 237 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E L +G + +EI +L S H V+ +L + NRIQ + Sbjct: 238 VNGLTPFEQELLIGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTSK 297 Query: 231 FGYI 234 I Sbjct: 298 LELI 301 >gi|37223196|gb|AAQ90192.1| LuxR [Vibrio cholerae] Length = 214 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 11/194 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +++ L + + + Y + + I L N + + D Sbjct: 26 DINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNSPKKWREYYDDANLIKYDP 82 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + NS PI W I E + ++ G +FP+ + G + F Sbjct: 83 IVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGMLSFA 141 Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + H ++ ++ ++ + + +LT+RE CL +G Sbjct: 142 HSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNTDLTKREKECLAWPCEGK 200 Query: 190 TSEEIAEKLGLSVH 203 TS +I + LG S Sbjct: 201 TSWDIPKILGCSER 214 >gi|15603675|ref|NP_246749.1| NarP [Pasteurella multocida subsp. multocida str. Pm70] gi|12722232|gb|AAK03894.1| NarP [Pasteurella multocida subsp. multocida str. Pm70] Length = 209 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V +I + ++ Q Sbjct: 72 LRAEGIDARILILTVSDLKSDIFTLIDAGADGYLLKDTEPDALLSQIQRIAQGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I D L + + +LT+RE L+L G ++++IA +L +S TV ++ + KL Sbjct: 132 IKDALIERQMNADPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A Sbjct: 192 NVHSRVAATVLYFEH 206 >gi|325529069|gb|EGD06070.1| LuxR superfamily regulatory protein [Burkholderia sp. TJI49] Length = 267 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 70/243 (28%), Gaps = 17/243 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + A + L Sbjct: 27 TLAHAQSTAERNRIVSGLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PATYRGDYV 84 Query: 67 ILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQLSVRLEGGLLPFAG 117 D +PI+W + + V +S ++ +G Sbjct: 85 RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRQRDDGCVTPASLDGFLQTMQDDGMCSG 144 Query: 118 IAFPVRLGFHKN-GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAA 171 I + + + + ++ FT+ + G + R A Sbjct: 145 IMYSMAVPGTRLHAFMSFTAPRRTREWITPATVEQALSIGLSVHKFASPQLIATSRERAV 204 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E L +G + +EI +L S H V+ +L + NRIQ + Sbjct: 205 NGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTSKL 264 Query: 232 GYI 234 I Sbjct: 265 ELI 267 >gi|321314554|ref|YP_004206841.1| two-component response regulator YfiJ [Bacillus subtilis BSn5] gi|320020828|gb|ADV95814.1| two-component response regulator (YfiJ) [Bacillus subtilis BSn5] Length = 220 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++R+G Sbjct: 158 LTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216 >gi|296330481|ref|ZP_06872960.1| two-component response regulator (DesK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674733|ref|YP_003866405.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152378|gb|EFG93248.1| two-component response regulator (DesK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412977|gb|ADM38096.1| two-component response regulator (paired with DesK) [Bacillus subtilis subsp. spizizenii str. W23] Length = 199 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LT+RE L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDIYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|297203696|ref|ZP_06921093.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197711744|gb|EDY55778.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETS 180 VR + + +LA + V E + LT RE Sbjct: 106 VRRDDLVHAVRVVAGGDSLLAPTITRRL--VADIVRRRREEAATGATPDRLDALTAREVE 163 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ G ++ EIA L +S HTV ++ + KL +R+QA+ A G + Sbjct: 164 ILRMLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGLV 217 >gi|195873588|ref|ZP_02697602.2| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633426|gb|EDX51840.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 248 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 91 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|157683240|gb|ABV64383.1| response regulator [Anabaena sp. L-31] Length = 228 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + + + LT RE L L G T++EIA L ++ Sbjct: 129 WDETATREIRSSIAASQSQPSTENLIKSDHPLTGRELEILSLLAQGKTNQEIATALYITP 188 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + KLD +R QA+ A++ I Sbjct: 189 GTVRVHVHAILHKLDVSDRHQAVVLALQKRLI 220 >gi|331267046|ref|YP_004326676.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683718|emb|CBZ01336.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 199 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIATESGWL 199 >gi|293390864|ref|ZP_06635198.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951398|gb|EFE01517.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D7S-1] Length = 209 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I + ++ + Sbjct: 72 LRAEGVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIARGEVILSDS 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + +LT+RE L+L G ++++IA +L +S TV ++ + KL Sbjct: 132 IKNLLLERQSAQEPIYSLTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A Sbjct: 192 NVHSRVAATVLYFEH 206 >gi|330816528|ref|YP_004360233.1| Transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] gi|327368921|gb|AEA60277.1| Transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] Length = 293 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 10/227 (4%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L + + + A FA + + A P R L + D Sbjct: 69 REALREIVSRLVRLLGAERFA-FLLVPAEGEPPRLGDEEVLTDAAPAWLDSYRARGLFET 127 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + P +I + A + P L G V+ Sbjct: 128 DPGIAYARRNSAPTGAAAIAPRADGPCALGEHD---AAHGFRAKLIAPAHLPTPGLGGVL 184 Query: 134 FTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + I +++ + ++ + LTERET L+L Sbjct: 185 YVGLDARADEGEAALHGKRILYRLIASELLDWHARQQRSDAARSLALTERETGILRLLRS 244 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +IA +L ++V TV Y K + + +A G + Sbjct: 245 GCTAHDIAGQLCVAVPTVYGYYKRLNEKFSVNHISLTVKRAATLGLL 291 >gi|324324220|gb|ADY19480.1| two component LuxR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 218 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA Sbjct: 149 PEQLAQLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIY 208 Query: 228 AIRFGY 233 A+R+G Sbjct: 209 AVRYGI 214 >gi|302545751|ref|ZP_07298093.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302463369|gb|EFL26462.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 3/197 (1%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 I+ + P +Q + N D + + E G + + + Sbjct: 28 IDVVGEAPDGRQGVDVSRNTHPDVVLMDVRMPEMDGLEAARQLLEPPRGVTHRPKVLMLT 87 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 +G V + L + Sbjct: 88 TFDVDDYVYEALRAG--ASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR-RLIAEFAR 144 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RET L+L G +++EIAE L L+ TV ++G KL Sbjct: 145 QRPAPRRNSSLLRRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTHIGRVLAKLG 204 Query: 218 AVNRIQAIAKAIRFGYI 234 +R QA+ A G + Sbjct: 205 LRDRAQAVIFAYESGLV 221 >gi|228990919|ref|ZP_04150883.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228768856|gb|EEM17455.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 191 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ + + L+ERE L+L G T+ EIAE L +S TV ++ Sbjct: 100 RVAARVVNEIRATKQASPDPFSELSERELEVLRLIARGLTNAEIAESLFISGKTVKGHVS 159 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL ++R +A A G+ Sbjct: 160 NILSKLHMLDRTKAAVFAWEQGF 182 >gi|254414589|ref|ZP_05028354.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420] gi|196178437|gb|EDX73436.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420] Length = 217 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L L G +++EI E L ++ TV ++ + KLD +R QA AI+ Sbjct: 152 ANPLTQREQEILALIAAGKSNQEIGELLHIATGTVRVHVHAILQKLDVRDRTQAAVLAIQ 211 Query: 231 FGYI 234 G + Sbjct: 212 KGLV 215 >gi|329939330|ref|ZP_08288666.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301559|gb|EGG45453.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A + A G ++IT+F + S + LTERET L Sbjct: 109 DASAEQLAEAVRVVAAGDGLLAPGVTRRLITEFTRMRSGPRSPLKERVGTLTERETEVLA 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIAE+L ++ TV ++G VKL +R QA A G + Sbjct: 169 LIAQGLSNAEIAERLCVAEQTVKTHVGRILVKLGLRDRTQAAVYAFESGVV 219 >gi|300932860|ref|ZP_07148116.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 252 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G++++EIAE+L +S+ TV ++G K + +R+ A+ A++ Sbjct: 182 DPLTPREREILCLVATGHSNQEIAEELFISLPTVKTHVGRVLTKTGSRDRVHAVLFALKH 241 Query: 232 GYI 234 + Sbjct: 242 HLV 244 >gi|37520140|ref|NP_923517.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211133|dbj|BAC88512.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 217 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 38/83 (45%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 QV + F + + A LTERE L G ++ EI +L +S TV ++ + Sbjct: 132 VLAQVRSAFAVAPSEPPANAAALTEREREVLGWIARGASNPEIGRQLHISSGTVRVHVHA 191 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R QA A+ G I Sbjct: 192 ILRKLGATDRTQAAVLALEKGLI 214 >gi|331699942|ref|YP_004336181.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954631|gb|AEA28328.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 221 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 1/113 (0%) Query: 123 RLGFHKN-GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V + L + A + R LT+RET Sbjct: 105 HAPATDLLHAVRVVAAGEALLAPEVTRRLIAHFVAARPDPAAAGPRPDRLAPLTDRETEV 164 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA+ L L+ TV ++ KL +R QA+ A G + Sbjct: 165 LGLVARGLSNTEIADALVLAEQTVKTHVSRIFGKLGLRDRAQAVVVAYECGLV 217 >gi|116494716|ref|YP_806450.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116104866|gb|ABJ70008.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 202 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ + LT+RE + L G +S++IA L LS TV YL + KL NRI+A+ Sbjct: 135 TAESNPLTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQM 194 Query: 228 AIRFGYI 234 A + ++ Sbjct: 195 AKKNKWL 201 >gi|289522810|ref|ZP_06439664.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503834|gb|EFD24998.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 222 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198 ++ +++ A V+ D+L L + AA L+ RE L+L G ++ IA KL Sbjct: 121 AVSQDLVYLTPKAAKIVLEDYLLLKRGDVLAAENKLSPREMEVLRLLVKGEHTKSIASKL 180 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV+ + + KL+ N AIR G + Sbjct: 181 SISKSTVDTHRKNIMEKLNCANIADLTRYAIREGLV 216 >gi|282854131|ref|ZP_06263468.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282583584|gb|EFB88964.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|313813050|gb|EFS50764.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|314923106|gb|EFS86937.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314966874|gb|EFT10973.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981217|gb|EFT25311.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091787|gb|EFT63763.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315103290|gb|EFT75266.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327327699|gb|EGE69475.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 218 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + ++ + + S A LT RE +L G ++ Sbjct: 109 LVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLTAREIEVAKLVARGLSNA 168 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 169 EIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|75908471|ref|YP_322767.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702196|gb|ABA21872.1| Transcriptional Regulator with GAF sensor, LuxR family [Anabaena variabilis ATCC 29413] Length = 224 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 68/224 (30%), Gaps = 29/224 (12%) Query: 11 SSSLQELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + QEL P L I +++ +Y I+S Q I + + Sbjct: 15 IRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKPDTETQSI------PAVCLESNPVGR 68 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 H L P W+ + P+ Sbjct: 69 YVVERHAPAHEQLILTPEDWKD--------------FCPRHDHG--HVMTGPIICDGRLI 112 Query: 130 GYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F + A + + C + L +SS LT RE + Sbjct: 113 GTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLRTNPNIFKSSTTNPLTPRELQIAE 172 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L G T+ EIAEKL ++ ++V L KL R + +A+ Sbjct: 173 LVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVAR 216 >gi|261405105|ref|YP_003241346.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281568|gb|ACX63539.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 200 Score = 92.2 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 N Y++ S LA + G + + S LTERE L L Sbjct: 94 AGANAYLLKDSPSEELAASIRSIMAGRRIYASE---LVDEAYSGEENPLTEREKEVLGLI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L ++ TV Y+ KL NRI+AI + G+ Sbjct: 151 ADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEAITRFKEKGW 198 >gi|332668949|ref|YP_004451957.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337987|gb|AEE44570.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 226 Score = 92.2 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 ++ + + + LT RE L+L +G ++ E Sbjct: 120 AGTSVVAPRVLRRMLDLFAPHLPTGGRAPAPDGQDPRLAALTPRELDVLRLVAEGASNVE 179 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IA +L +S TV ++G+ KL A +R+QA+ A G Sbjct: 180 IAAELVVSEATVKTHVGNVFAKLGARDRVQAVIIAYECGL 219 >gi|225175373|ref|ZP_03729368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169125|gb|EEG77924.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 378 Score = 92.2 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 33/72 (45%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L+ RE L L G +++EI+EKL LSV TV + + KL R Sbjct: 305 ASSPIPGLVEELSTRELEILDLINRGLSNQEISEKLFLSVGTVKWHTSNIYGKLGVKGRT 364 Query: 223 QAIAKAIRFGYI 234 QAIA A + + Sbjct: 365 QAIAMARKLNML 376 >gi|16077897|ref|NP_388711.1| two-component response regulator YfiJ [Bacillus subtilis subsp. subtilis str. 168] gi|221308666|ref|ZP_03590513.1| hypothetical protein Bsubs1_04608 [Bacillus subtilis subsp. subtilis str. 168] gi|221312990|ref|ZP_03594795.1| hypothetical protein BsubsN3_04559 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317916|ref|ZP_03599210.1| hypothetical protein BsubsJ_04503 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322189|ref|ZP_03603483.1| hypothetical protein BsubsS_04599 [Bacillus subtilis subsp. subtilis str. SMY] gi|81818210|sp|P94439|YFIK_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yfiK gi|1817535|dbj|BAA11401.1| YfiK [Bacillus subtilis] gi|2633154|emb|CAB12659.1| two-component response regulator [YfiJ] [Bacillus subtilis subsp. subtilis str. 168] Length = 220 Score = 92.2 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++R+G Sbjct: 158 LTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216 >gi|308178463|ref|YP_003917869.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745926|emb|CBT76898.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 221 Score = 92.2 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 1/106 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + +L+ EV ++ + + LTERE L G Sbjct: 115 AVHQVAAGNGLLSPEVTLKLIQRNTGAAQSTPSAAATAEAQLLEALTERERQVLGELATG 174 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA LGLS TV +L + KL +R+Q + A R G I Sbjct: 175 KNNQEIAAVLGLSEATVKTHLSNLLAKLHLRDRVQGVLFAHRAGLI 220 >gi|284028348|ref|YP_003378279.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283807641|gb|ADB29480.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 210 Score = 92.2 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 47/110 (42%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY++ + L + A G L K+ S LTERE L L Sbjct: 96 DAGASGYLLKDAPPDDLFRAIRGTARGEVVLAPAVAARLVKRAGSPGPVLTEREVEILGL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ E+A++L +S TV ++L KL R A+A+AI I Sbjct: 156 LATGQSNRELAKRLFVSEATVKSHLSHIYTKLGVDTRAAAVARAIEQHII 205 >gi|171909840|ref|ZP_02925310.1| NarL subfamily protein [Verrucomicrobium spinosum DSM 4136] Length = 216 Score = 92.2 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G +++EIA L +S TV +L S KLD ++R +AIA A R Sbjct: 152 EPLTRREQEVLELLARGRSNKEIASTLSISEPTVKTHLRSLFGKLDVLSRTEAIAVASRK 211 Query: 232 GYI 234 G + Sbjct: 212 GLV 214 >gi|238064365|ref|ZP_04609074.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886176|gb|EEP75004.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 228 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + R+LT RE ++LA DG +++EIA +L LS TV ++ A KL A +R Sbjct: 149 AAPQPTTPGIRDLTNREREAMKLAADGKSNDEIARELNLSALTVRTHIQRAMTKLGARDR 208 Query: 222 IQAIAKAIRFGYI 234 Q + A + G + Sbjct: 209 AQLVVLAYKNGLV 221 >gi|227535294|ref|ZP_03965343.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187028|gb|EEI67095.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 202 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ + LT+RE + L G +S++IA L LS TV YL + KL NRI+A+ Sbjct: 135 TAESNPLTDRELAVLAAVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQM 194 Query: 228 AIRFGYI 234 A + ++ Sbjct: 195 AKKNKWL 201 >gi|254424867|ref|ZP_05038585.1| transcriptional regulator, LuxR family protein [Synechococcus sp. PCC 7335] gi|196192356|gb|EDX87320.1| transcriptional regulator, LuxR family protein [Synechococcus sp. PCC 7335] Length = 412 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L G EI+++L +S TV + + KL R QA+ +A + G Sbjct: 351 PLSAREQEVIMLLAQGLRDREISKQLFISERTVKFHTRNMLGKLGVRTRTQAVFRATKQG 410 Query: 233 YI 234 ++ Sbjct: 411 WL 412 >gi|323358243|ref|YP_004224639.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323274614|dbj|BAJ74759.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 222 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + L+ + + S A LTERE+ L+L + ++ EI Sbjct: 123 AGDALLAPEVTRRVIARFASGGAPEPAASVRPPLSLAEPLTERESEVLKLVAEALSNAEI 182 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L + TV ++ + KL A +R+QA+ A R G Sbjct: 183 AARLFIGEATVKTHVSNVLQKLGARDRVQAVVLAHRHGL 221 >gi|319651764|ref|ZP_08005890.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2] gi|317396583|gb|EFV77295.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2] Length = 74 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T+ EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTREIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|238027886|ref|YP_002912117.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237877080|gb|ACR29413.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 243 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 21/166 (12%) Query: 88 IWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 W+ + + + + +S G A I + + + Sbjct: 80 RWRDLDTDRSSLHASEADVASYMRGQGIVACIGASSGDPAAIRTVLQL--KCEDESLHSA 137 Query: 147 IEAHGACYQVITDF------LELFKKRSSAAR------------NLTERETSCLQLAGDG 188 + + + R AA T +E+ ++ +G Sbjct: 138 LILSFIAMHLHAALTQKIPDRSHGEARMPAAETDGVGSADGEGFQFTRKESEVVKWVVEG 197 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EI L +S TV +L + KL NR QA+AK R G I Sbjct: 198 KTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKVSRLGLI 243 >gi|256822428|ref|YP_003146391.1| two component LuxR family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256795967|gb|ACV26623.1| two component transcriptional regulator, LuxR family [Kangiella koreensis DSM 16069] Length = 212 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 38/85 (44%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 A + T + + K+ +NLT+RE L DG T+++IA L +SV T + Sbjct: 127 QYAASVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKDIARTLDISVKTAENHR 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 G KL N + + A + + Sbjct: 187 GKVLDKLGVSNTAELVRYAAKHNLL 211 >gi|204928389|ref|ZP_03219589.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322711|gb|EDZ07908.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 248 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 91 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|149184470|ref|ZP_01862788.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831790|gb|EDL50223.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 140 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGY--VIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 + L + F + +++ + F+SE LA V+ H Sbjct: 8 HLDKLRALGVRNWVGFALYGPRNRDAFGSAGFSSEPSELAEGVLTATHSILSSAHLQICR 67 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + + +L++RE L+L G G TS EI L +S TV Y KL+A +R+ Sbjct: 68 IMDRANPEI-SLSQRERQVLELMGSGKTSVEIGTILAISPETVKTYTKRLYEKLEANDRV 126 Query: 223 QAIAKAIRFGYI 234 A +A++ G + Sbjct: 127 TATVRALKLGLV 138 >gi|15901823|ref|NP_346427.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111656996|ref|ZP_01407802.1| hypothetical protein SpneT_02001776 [Streptococcus pneumoniae TIGR4] gi|148995258|ref|ZP_01824066.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|168490006|ref|ZP_02714205.1| DNA-binding response regulator [Streptococcus pneumoniae SP195] gi|5830548|emb|CAB54585.1| response regulator [Streptococcus pneumoniae] gi|14973509|gb|AAK76067.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|147926803|gb|EDK77860.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|183571627|gb|EDT92155.1| DNA-binding response regulator [Streptococcus pneumoniae SP195] gi|332072085|gb|EGI82572.1| response regulator [Streptococcus pneumoniae GA17570] Length = 199 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + LTE+E + L+ G++++EIA+KL LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|308070500|ref|YP_003872105.1| Germination protein gerE [Paenibacillus polymyxa E681] gi|305859779|gb|ADM71567.1| Germination protein gerE [Paenibacillus polymyxa E681] Length = 75 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T+ +IA +L +S TV ++ + KL+ R QA+ + IR G Sbjct: 13 LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRLG 71 >gi|238764730|ref|ZP_04625673.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] gi|238697021|gb|EEP89795.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] Length = 219 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + I V +I E+++E + Sbjct: 82 LRHEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLAAKGEPVFSDE 141 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 142 VAQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 201 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 202 NVRSRVAATIL 212 >gi|75812313|ref|YP_319932.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705069|gb|ABA24743.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 220 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE S L L G+++++I EKL + +TV + + KL +RI AI K Sbjct: 150 DHLTQREISVLALIAAGFSNKQIGEKLFIGENTVKNHARNIYSKLGVDSRINAILKGSEL 209 Query: 232 GYI 234 GYI Sbjct: 210 GYI 212 >gi|17229630|ref|NP_486178.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131229|dbj|BAB73837.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 209 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+ G ++ +IA+ L + TV +++ KLD +R QA+ A++ Sbjct: 145 PELSERELEVLRSLAQGMSNADIADALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKR 204 Query: 232 GYI 234 G + Sbjct: 205 GIV 207 >gi|331699447|ref|YP_004335686.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954136|gb|AEA27833.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 211 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 36/78 (46%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L R + L+ RE ++ G T+ EIA L +S+ TV +L + KL Sbjct: 133 LLRHLTTPAPRPTLPEPLSPREIDVVRAVARGRTNAEIAADLFVSLSTVKTHLTNVQAKL 192 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR++ A A G + Sbjct: 193 GARNRVEVAAWAWEHGLV 210 >gi|312132943|ref|YP_004000282.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|311773923|gb|ADQ03411.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] Length = 248 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 242 Query: 229 IRFGYI 234 + Sbjct: 243 YENHLV 248 >gi|302561087|ref|ZP_07313429.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302478705|gb|EFL41798.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 230 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 35/233 (15%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + D R+ LD Sbjct: 17 VDDHPMWRDAVARDLSEAGFEVVATAGDGDQAVRRAKAAAPDVLVLDL--------NLPA 68 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + V+ ++ + V + A + V+ G Sbjct: 69 KPGVQVCKE--------------VVAANPAVRVLVLSASGEHADVLEAVKSGATGYLLKS 114 Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSA--------ARNLTERETS 180 ++E L A G V+ ++ L + + A LT+RET Sbjct: 115 ASTEDLQDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAGPAPGDGEPGAPRLTDRETE 174 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 175 VLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 227 >gi|229493356|ref|ZP_04387145.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229319672|gb|EEN85504.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 220 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A Sbjct: 155 DALTPREREVLELIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYES 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|218291050|ref|ZP_03495082.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218239004|gb|EED06210.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 506 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELF 164 + + PV G ++ + + A V+ + + Sbjct: 376 FHLSSLLVCPVIDQRRLLGIMLLDHGGRPFTPDNAAIRMVEAMLARAGRMIVMQMYRQAG 435 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT+RE LQL DG ++EI L +S +TV ++ S KL A NR +A Sbjct: 436 AAPITPLTTLTKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEA 495 Query: 225 IAKAIRFGYI 234 +AKA+R I Sbjct: 496 VAKAMRERII 505 >gi|200388129|ref|ZP_03214741.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605227|gb|EDZ03772.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 248 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 91 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLSIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|148271583|ref|YP_001221144.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829513|emb|CAN00426.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 245 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L+L +G + EIAE+L L TV ++ +KL +R+QA+ A Sbjct: 175 PRVATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFA 234 Query: 229 IRFGYI 234 G + Sbjct: 235 YERGIV 240 >gi|322437485|ref|YP_004219575.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165378|gb|ADW71081.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 244 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY++ + L ++ A G + ++ +R L+ERE L+L Sbjct: 135 SAGASGYLLKGIDGSTLVQQLRHVASG--GRAMSPEALEKFTDYLTSRKLSEREIEVLRL 192 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA +L ++ T+ ++ S KL A +R QA+ AI+ G + Sbjct: 193 VAKGNSNKEIAAQLFVTEDTIKVHVRSMLAKLHASDRTQAVVIAIQRGLL 242 >gi|77918586|ref|YP_356401.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544669|gb|ABA88231.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM 2380] Length = 223 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%) Query: 151 GACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + ++ S A ++ LT RE L G ++EI+ L +S T Sbjct: 133 YLMDLAVDWHASEQEEESPADKDDESDAFLTRREQQILSCLAQGQGNKEISNALFISTET 192 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ + KL+ +R++A+ A I Sbjct: 193 VKTHIKNIFKKLEVKSRLEAVIAAKEKKLI 222 >gi|251795472|ref|YP_003010203.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|304408019|ref|ZP_07389669.1| transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|247543098|gb|ACT00117.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] gi|304343038|gb|EFM08882.1| transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 74 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T+ +IA++L +S TV ++ + KL+ R QA+ + I+ G Sbjct: 12 LTHREREVFELLVQDKTTRDIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLG 70 >gi|28975412|gb|AAO61802.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus] gi|328469240|gb|EGF40186.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 223 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + ++ ++ S LT+RE + G ++++IAE+L +S +TV Sbjct: 129 WFSRKFAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQQIAEQLFVSENTV 188 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 +L + K+D NR+QA+ A Sbjct: 189 KTHLHNIFKKIDVKNRVQALIWAKEN 214 >gi|28901302|ref|NP_800957.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153836071|ref|ZP_01988738.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ3810] gi|260362859|ref|ZP_05775728.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus K5030] gi|260880147|ref|ZP_05892502.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AN-5034] gi|260895264|ref|ZP_05903760.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus Peru-466] gi|260900616|ref|ZP_05909011.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ4037] gi|28809815|dbj|BAC62790.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149750825|gb|EDM61570.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ3810] gi|308085647|gb|EFO35342.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus Peru-466] gi|308091763|gb|EFO41458.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AN-5034] gi|308107093|gb|EFO44633.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ4037] gi|308112345|gb|EFO49885.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus K5030] Length = 223 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + ++ ++ S LT+RE + G ++++IAE+L +S +TV Sbjct: 129 WFSRKFAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQQIAEQLFVSENTV 188 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 +L + K+D NR+QA+ A Sbjct: 189 KTHLHNIFKKIDVKNRVQALIWAKEN 214 >gi|298246164|ref|ZP_06969970.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553645|gb|EFH87510.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 465 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 ++A ++ ++++ ++R + + LT RE L+L Sbjct: 357 DVSSEELAEALRVVARGEVLVQPQLAGRLLSRVGR-ERERGARSEVLTTRELEVLRLLVR 415 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA +L +S TVN +L + K++ R +A++KA+ G + Sbjct: 416 GLRNKEIAARLYVSERTVNFHLANIYQKMNVSGRTEALSKALAQGLV 462 >gi|300087957|ref|YP_003758479.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527690|gb|ADJ26158.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 7/134 (5%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLE---- 162 + A + +R G + + L+ A + H ++ + Sbjct: 81 MLSMYGNEAYVQGALRAGARGYILKEASVDELVAAVREVAAGRHYLSTELSQRAIAYYIK 140 Query: 163 --LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ +S L+ RE L L YT +IA+KL +S TV A+ + KL N Sbjct: 141 QPSAEEETSPYEQLSNREREVLHLVVRDYTGADIAKKLFISPRTVEAHRANLMRKLGMKN 200 Query: 221 RIQAIAKAIRFGYI 234 R Q I ++ G + Sbjct: 201 RTQLIKFCLQNGIL 214 >gi|282864347|ref|ZP_06273403.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560834|gb|EFB66380.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 223 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + A LTERE L+L G ++ EIA L +S TV ++G Sbjct: 135 RLLDKYADHLPSGEEPVPDALHTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A G + Sbjct: 195 HVLTKLRLRDRVQAAVYAYESGLV 218 >gi|2916781|emb|CAA11948.1| unnamed protein product [Sinorhizobium meliloti] Length = 245 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 24/219 (10%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L + + A ++ L + + D ++ D + Sbjct: 46 LAALTEYVGATHYLLARHDVSQD---GGLDFVVCSDWPFD---------------IVRRL 87 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA-----FPVRLGFHKNGYVIFT 135 + + + + + E + + + G++ +G + ++ Sbjct: 88 SGIIAGLHAKITELEKCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLMLLF 147 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 E ++L+ E + + V + ++ + LTERE CL +G TS+EIA Sbjct: 148 PEDVILSQESLRDIAVLAGYVASHKIKADVRHDRECE-LTERELECLFWIAEGKTSDEIA 206 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 207 VILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245 >gi|332532863|ref|ZP_08408736.1| transcriptional regulator, LuxR family [Pseudoalteromonas haloplanktis ANT/505] gi|332037709|gb|EGI74160.1| transcriptional regulator, LuxR family [Pseudoalteromonas haloplanktis ANT/505] Length = 216 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ ++ +LT ++ LQ +G +++IA +L +S TV A++ + KL NR Q Sbjct: 141 DREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQ 200 Query: 224 AIAKAIRFGY 233 A+ A + Sbjct: 201 AVLIAAKLKL 210 >gi|291444348|ref|ZP_06583738.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347295|gb|EFE74199.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 2/197 (1%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 I+ + +Q + N+ D + + E G + + ++ + Sbjct: 24 IDVVGEAADGRQGVDVSRNHHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLT 83 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 +G V + L + A + Sbjct: 84 TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQ 141 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 ++ LT RE+ L+L G +++EIA +L L+ TV ++G KLD Sbjct: 142 RPAGATRTGQALRLNGLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLD 201 Query: 218 AVNRIQAIAKAIRFGYI 234 +R QA+ A G + Sbjct: 202 LRDRAQAVIFAYESGLV 218 >gi|229818194|ref|ZP_04448476.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM 20098] gi|229784445|gb|EEP20559.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM 20098] Length = 226 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +SV TV ++ S KL NR + A Sbjct: 164 DRLSNREQEVMRLIARGYTYKEVAAELFISVKTVETHVSSVLRKLQLSNRTELTRWAADR 223 Query: 232 GYI 234 + Sbjct: 224 RIV 226 >gi|194468755|ref|ZP_03074739.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358488|ref|ZP_02656765.2| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194455119|gb|EDX43958.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333746|gb|EDZ20510.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 248 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + ++ + + I +R G + + Sbjct: 91 SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|220913015|ref|YP_002488324.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219859893|gb|ACL40235.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 242 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + ++ + + + E + +A + LT RE QL G ++ Sbjct: 138 VHRGDAVIAPSTTRRLLDHVAPLLRSQGNERPEH-HAAVQRLTTREREVFQLIAQGRSNP 196 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L +S TV ++G KL A +R+QA+ A G + Sbjct: 197 EIAAGLFVSEATVKTHVGHILAKLGARDRVQAVVIAYETGVV 238 >gi|300865100|ref|ZP_07109925.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300336871|emb|CBN55075.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 210 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 VI + +++ L++RE+ L+L +GY++ EIA L LS +T+ ++ Sbjct: 128 IARTVIENLKPPTPVSTASIGQLSQRESEVLKLMVEGYSNPEIAAALYLSPNTIKTHVRG 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 188 IMNKLAVDDRVQAAVVALRAGLV 210 >gi|221068174|ref|ZP_03544279.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220713197|gb|EED68565.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 253 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLTERETSCLQL 184 + + +V+ + L+ KR ++ + L+ RE L++ Sbjct: 144 SWFGNYPQAVLQVVNGGASITPSLARRLLQRCDKRPASGAVPGSDMSDRLSSRECEVLRM 203 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G TS EI L +S TVN ++ + KL +R QA+ A G+ Sbjct: 204 VASGNTSAEIGASLEISTMTVNTHIKNIYRKLQVRSRAQAVRFAYLRGW 252 >gi|50842410|ref|YP_055637.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|50840012|gb|AAT82679.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|315105495|gb|EFT77471.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 218 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + ++ + + S A LT RE +L G ++ Sbjct: 109 LVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLTAREIEVAKLVARGLSNA 168 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 169 EIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|23015369|ref|ZP_00055147.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G + EIA++LG+++ TV + KLD N + A AIR G Sbjct: 147 ALTAREREVLQLIARGNKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRG 206 Query: 233 YI 234 I Sbjct: 207 LI 208 >gi|328544601|ref|YP_004304710.1| transcriptional regulatory protein [polymorphum gilvum SL003B-26A1] gi|326414343|gb|ADZ71406.1| Transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1] Length = 233 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 11/235 (4%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S +S++ Q++ L RI A + + + + + +H Y Sbjct: 7 LSTQLRIVSESTTAQKILDILEANLARIGATHILITGLPMP-----NRPIDSLVHRY--- 58 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA- 119 P+ + L +S L+ + + + + RL + + I Sbjct: 59 --RWPDTRNGSTESPVLHASDSALMLGLASNRATVWTVTAGDMDHSRLLAAVGEGSQILI 116 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 PV +V L + T ++ S L+ RE Sbjct: 117 VPVTELHPLQAFVFCAGPKLKTGKYELAALELLTDAAFTRLQDIGALSSQRPGALSSRER 176 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIAE L +S TV+A+L +A+VKL+A N+ + +A+R+G I Sbjct: 177 KVLELTAFGKTASEIAELLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231 >gi|291004781|ref|ZP_06562754.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 212 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LTERE L L G ++ E+A +L LS T+ ++G KLD +R+QA+ Sbjct: 139 RDPGVLDVLTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRDRVQAV 198 Query: 226 AKAIRFGYI 234 A G + Sbjct: 199 VLAYETGLV 207 >gi|271962124|ref|YP_003336320.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505299|gb|ACZ83577.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 45/106 (42%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + G +A I +V+T F + +A LTERE L+L Sbjct: 104 EAGAEEIGRAVHAVAAGEAIYGPEIARRVLTYFAGMPDPSRTAFPELTEREREVLELVAQ 163 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G + EIA L LS TV ++ + +KL +R QAI +A G Sbjct: 164 GRGNNEIAGILFLSGKTVRNHVSNIFMKLQVADRAQAIVRAREAGL 209 >gi|197265742|ref|ZP_03165816.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244696|ref|YP_002217099.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224584919|ref|YP_002638718.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|197243997|gb|EDY26617.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939212|gb|ACH76545.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224469447|gb|ACN47277.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 248 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 91 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|126727388|ref|ZP_01743223.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126703383|gb|EBA02481.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 204 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + LT+RE L+ G +++EIA L + TV ++ + K+ A NR Q Sbjct: 134 EEAKHPLVEKLTKRECEVLKGLTKGKSNKEIARDLNIQEPTVKLHMKTLYRKIGAANRTQ 193 Query: 224 AIAKAIRFGY 233 A A G Sbjct: 194 AALMAYEAGI 203 >gi|261251165|ref|ZP_05943739.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP 102891] gi|260938038|gb|EEX94026.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP 102891] Length = 205 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 11/138 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAH---GACYQVI 157 L + V ++ + +I+ + Sbjct: 63 LNALRADECDATIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELIDLLKDSLRGNKAY 122 Query: 158 TD----FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + +L + SS LT+RE L+ G +++IA+ L +S TV ++ S Sbjct: 123 SQEVATYLAERENTSSVFDELTDREMQILKEVAKGLRNKQIADTLFISESTVKVHMKSLL 182 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL +R A + Sbjct: 183 KKLQVPSRTAATVLYLER 200 >gi|260061809|ref|YP_003194889.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea biformata HTCC2501] gi|88785942|gb|EAR17111.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea biformata HTCC2501] Length = 536 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K R R LT RE L+L G T++ A +L +S TV+ ++ + KL +R+ Sbjct: 461 LHKTREHPTRRLTLRELQVLRLIASGMTNKSAARELFISERTVDRHVSNIFDKLGVSSRV 520 Query: 223 QAIAKAIRFGYI 234 A AI+ I Sbjct: 521 AATVVAIKHKLI 532 >gi|239940914|ref|ZP_04692851.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987390|ref|ZP_04708054.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 229 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 2/197 (1%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 I+ + +Q + N+ D + + E G + + ++ + Sbjct: 28 IDVVGEAADGRQGVDVSRNHHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLT 87 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 +G V + L + A + Sbjct: 88 TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQ 145 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 ++ LT RE+ L+L G +++EIA +L L+ TV ++G KLD Sbjct: 146 RPAGATRTGQALRLNGLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLD 205 Query: 218 AVNRIQAIAKAIRFGYI 234 +R QA+ A G + Sbjct: 206 LRDRAQAVIFAYESGLV 222 >gi|191638216|ref|YP_001987382.1| Response regulator [Lactobacillus casei BL23] gi|239631678|ref|ZP_04674709.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066277|ref|YP_003788300.1| CitB family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|190712518|emb|CAQ66524.1| Response regulator [Lactobacillus casei BL23] gi|239526143|gb|EEQ65144.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438684|gb|ADK18450.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382247|gb|AEA53723.1| Two component transcriptional regulator, LuxR family [Lactobacillus casei LC2W] gi|327385444|gb|AEA56918.1| Two component transcriptional regulator, LuxR family [Lactobacillus casei BD-II] Length = 202 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ + LT+RE + L G +S++IA L LS TV YL + KL NRI+A+ Sbjct: 135 TAESNPLTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQM 194 Query: 228 AIRFGYI 234 A + ++ Sbjct: 195 AKKNKWL 201 >gi|124024939|ref|YP_001014055.1| LuxR family regulatory protein [Prochlorococcus marinus str. NATL1A] gi|123960007|gb|ABM74790.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. NATL1A] Length = 90 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 40/71 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +S+ L+ RE + L DG T++EIAE+L +S TV+ ++ + K + NR+ Sbjct: 5 EIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKNRVAL 64 Query: 225 IAKAIRFGYIC 235 + A+ G IC Sbjct: 65 LNWAMDHGKIC 75 >gi|91794405|ref|YP_564056.1| response regulator receiver [Shewanella denitrificans OS217] gi|91716407|gb|ABE56333.1| two component transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 219 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTE 176 + G + + + L+ A EVI + V+ + L ++ L+E Sbjct: 102 FLTSLHAGANGFLLKDVSLDKLLNAIEVIAQGGVLIEPVVLNQLSQQAPINAPEVNPLSE 161 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RETS L+ +G +++EIA + L+ TV ++ + KL +R +A+ K + G I Sbjct: 162 RETSILKFMANGCSNKEIATGVFLAEGTVKNHVSNILSKLGCRDRTRAVLKGLELGII 219 >gi|159902711|ref|YP_001550055.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9211] gi|159887887|gb|ABX08101.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9211] Length = 90 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE + L DG T++EIA++L +S TV+ ++ + K + NR+ + A+ G Sbjct: 13 SLSAREMEIIDLVADGLTNQEIAQRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 72 Query: 233 YIC 235 IC Sbjct: 73 KIC 75 >gi|254442066|ref|ZP_05055542.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256374|gb|EDY80682.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L G +++EIA L L+ TV ++ + KL ++R QA A Sbjct: 158 EPLSQREEQVLVWLSRGCSNKEIASHLDLAEGTVKNHVSNVLGKLGVLDRTQAALMARDL 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|126650999|ref|ZP_01723210.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] gi|126592200|gb|EAZ86249.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] Length = 377 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 + I P+ G++ F E ++ ++ +K Sbjct: 251 FNLSSIIFIPIIQQDQLFGWLTFDQLGEEFDCTKVELLLLEEVGKRLGLFLSRKGEKVEK 310 Query: 170 AAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LTERE+ L L +GY +++I L LS HTV Y+ S KL A NR Q +A A Sbjct: 311 NTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASA 370 Query: 229 IRFGYI 234 R G + Sbjct: 371 FRLGLL 376 >gi|332290267|ref|YP_004421119.1| transcriptional regulator NarP [Gallibacterium anatis UMN179] gi|330433163|gb|AEC18222.1| transcriptional regulator NarP [Gallibacterium anatis UMN179] Length = 209 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 11/151 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------ 145 + S + L + V +I L + Sbjct: 55 LDLNMKGMSGLDVLKALRLDDIDARIAVLTVSDARSDIFALIEAGADGYLLKDTEPDTLL 114 Query: 146 -----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 I E + L + + LT+RE L+L G ++++IA +L + Sbjct: 115 VQLKKIAEGQVVLSDAVKQRLLDNHSANDPLQLLTDREMDVLKLIATGLSNKQIANQLFI 174 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 S TV ++ + KL+ +R+ A + Sbjct: 175 SEETVKVHIRNLLRKLNVHSRVAATVLYLEH 205 >gi|229028063|ref|ZP_04184215.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] gi|228733301|gb|EEL84131.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] Length = 214 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA Sbjct: 144 IPEQLAQLTEREVEVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAI 203 Query: 227 KAIRFG 232 A+R+G Sbjct: 204 YAVRYG 209 >gi|299137698|ref|ZP_07030879.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600339|gb|EFI56496.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 207 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196 + E +I A + + L R + A LT RE L G ++ EIAE Sbjct: 107 DASGEELINAIQTVDRDLRYLPRLALDRLAERTPAVELTPREREVLICITQGRSNREIAE 166 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L ++ TV ++ S K+ A +R QA A++ G + Sbjct: 167 QLHIAEKTVRIHVSSVLDKMGARDRTQATIYALQRGLV 204 >gi|205354044|ref|YP_002227845.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858383|ref|YP_002245034.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205273825|emb|CAR38822.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710186|emb|CAR34543.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629158|gb|EGE35501.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 227 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 18 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 70 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215 >gi|238759424|ref|ZP_04620588.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] gi|238702321|gb|EEP94874.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] Length = 202 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + I V VI E+++E Sbjct: 65 LRNEGIDARIIVLTVSDARSDVYAVIDAGADGYLLKDSEPEILLENIRQAAAGENVFSNE 124 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 125 VAQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 184 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A I Sbjct: 185 NVRSRVAATIMYIEN 199 >gi|16078980|ref|NP_389801.1| two-component response regulator DesK [Bacillus subtilis subsp. subtilis str. 168] gi|221309818|ref|ZP_03591665.1| hypothetical protein Bsubs1_10596 [Bacillus subtilis subsp. subtilis str. 168] gi|221314140|ref|ZP_03595945.1| hypothetical protein BsubsN3_10527 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319062|ref|ZP_03600356.1| hypothetical protein BsubsJ_10443 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323336|ref|ZP_03604630.1| hypothetical protein BsubsS_10562 [Bacillus subtilis subsp. subtilis str. SMY] gi|321311560|ref|YP_004203847.1| two-component response regulator DesK [Bacillus subtilis BSn5] gi|81815765|sp|O34723|DESR_BACSU RecName: Full=Transcriptional regulatory protein desR gi|2619014|gb|AAB84438.1| sensor regulator [Bacillus subtilis] gi|2634313|emb|CAB13812.1| two-component response regulator [DesK] [Bacillus subtilis subsp. subtilis str. 168] gi|291484510|dbj|BAI85585.1| hypothetical protein BSNT_03128 [Bacillus subtilis subsp. natto BEST195] gi|320017834|gb|ADV92820.1| two-component response regulator (DesK) [Bacillus subtilis BSn5] Length = 199 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LT+RE L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDLYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|29833019|ref|NP_827653.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610140|dbj|BAC74188.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 213 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178 +R G Y + L A + H +V L + S R +LTERE Sbjct: 97 LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEEANSGQGRGGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|311742864|ref|ZP_07716672.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311313544|gb|EFQ83453.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 216 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 39/96 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L ++ + + LTERE L L G+++ EIA + Sbjct: 119 RLAAEGHSLLAPEVTQRVIARSTSRAAPEADGRLDELTERERDVLVLLARGHSNAEIAGE 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S TV +++ KL+ +R+QA+ A G Sbjct: 179 LYVSAATVKSHVSHILAKLEVRDRVQAVILAFENGL 214 >gi|307154251|ref|YP_003889635.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984479|gb|ADN16360.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 231 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ G ++E+IA++L ++V TV A+L + KL NR QAI A++ Sbjct: 163 LTRREKEVLQYLIKGLSNEQIAQQLYITVATVKAHLTAIFNKLGVKNRTQAIVAAMK 219 >gi|148242532|ref|YP_001227689.1| two component system response regulator [Synechococcus sp. RCC307] gi|147850842|emb|CAK28336.1| Possible two component system response regulator [Synechococcus sp. RCC307] Length = 235 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 5/147 (3%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 W + Q VR I + Sbjct: 91 RWPQCICLLFLRRETQEVVREALDAGAQGVIFVSSLGSGEGDFMKAIARTLEGGTYFPGP 150 Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + L A L+ RE LQ +GY + EIA++L +S TV Sbjct: 151 VRDAAAFHPDDEAEGLE-----ALDQLSSREQEVLQALSEGYCNREIAQRLFISQETVKT 205 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R QA A+R G + Sbjct: 206 HVSTVISKLGVRDRTQAAVMALRMGLL 232 >gi|312880287|ref|ZP_07740087.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783578|gb|EFQ23976.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++T F ++R LT RE L G+++ EIA K+ LS TV ++ Sbjct: 131 VAGKLLTSFHRRREERDLLVD-LTPREREVLYWLSQGFSNAEIALKMVLSEKTVKNHVSH 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ +R QA A + G Sbjct: 190 VLRKLELNDRTQAAVLAWKMGL 211 >gi|300864647|ref|ZP_07109505.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337396|emb|CBN54653.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 91 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE ++L G T++EIA+KL +S TV+ ++ + K NR+ + A+++G Sbjct: 12 LSDRELQVVELVAAGLTNQEIADKLDISKRTVDNHMSNILTKTATGNRVALVRWAMQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|226365530|ref|YP_002783313.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244020|dbj|BAH54368.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 228 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +++ LTERE LQL G ++ +I E+L +S TV ++ + KLD R +A+ Sbjct: 160 GQTTPREGLTERELEVLQLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAV 219 Query: 226 AKAIRFGYI 234 +A + G I Sbjct: 220 YEAGKLGLI 228 >gi|213965869|ref|ZP_03394060.1| two-component system response regulator [Corynebacterium amycolatum SK46] gi|213951447|gb|EEB62838.1| two-component system response regulator [Corynebacterium amycolatum SK46] Length = 227 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + LT RE L+L G ++ +IAE+L L+ TV ++L KLD +R Sbjct: 153 RLMGRMRNPNTALTPRELEVLELVARGMSNRKIAEQLVLTEATVKSHLVHIFTKLDVSSR 212 Query: 222 IQAIAKAIRFGYI 234 A+A+A G + Sbjct: 213 TAAVARAQELGML 225 >gi|170781371|ref|YP_001709703.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155939|emb|CAQ01071.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 249 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L+L +G + EIAE+L L TV ++ +KL +R+QA+ A Sbjct: 179 PRVATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFA 238 Query: 229 IRFGYI 234 G + Sbjct: 239 YERGIV 244 >gi|15964400|ref|NP_384753.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073577|emb|CAC45219.1| Transcriptional regulator of motility genes, LuxR family [Sinorhizobium meliloti 1021] Length = 245 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 18/216 (8%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI--PNILIETYGDDFLF 78 L + + A ++ L + + D ++ D I L Sbjct: 46 LAALTEYVGATHYLLARHDVSQD---GGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELE 102 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + L P + + G + + F V G + ++ E Sbjct: 103 RCLAQLQPAFHTMPDDIGLP----------RGVSRSYCAVTFSV--GRTRFSLMLLFPED 150 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 ++L+ E + + V + ++ + LTERE CL +G TS+EIA L Sbjct: 151 VILSQEALRDIAVLAGYVASHKIKADVRHDRECE-LTERELECLFWIAEGKTSDEIAVIL 209 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+S +T+N Y+ S K R +AIA A+R + Sbjct: 210 GISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245 >gi|186681008|ref|YP_001864204.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463460|gb|ACC79261.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Query: 160 FLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + A NL+ RE L+L DG ++ EIAEKL LS +T+ ++ Sbjct: 146 ARRVIDNLKPPAPTSNNANLSARELEVLKLMVDGLSNPEIAEKLYLSPNTIKTHVRGIMN 205 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 206 KLAVDDRVQAAVVALRSGLV 225 >gi|271962079|ref|YP_003336275.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505254|gb|ACZ83532.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 212 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 11/120 (9%) Query: 125 GFHKNGYVIFTSEFLMLAN--EVIIEAH----GACYQVITDFLELFKKRSSAAR-----N 173 + G F + + A + I H + L + + A Sbjct: 92 PAMRAGASGFLYKDVDPAALVQAIRAVHGGQVLLAPEAAEAMLSVPAPAPAPAEGRYVAP 151 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G ++ EIA +L ++ TV ++ + +KL +R QA A+R G Sbjct: 152 LTDREREVLTLIASGRSNREIARELAVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNGL 211 >gi|75908249|ref|YP_322545.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701974|gb|ABA21650.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 219 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L G ++EIA++L +S TV ++ + +L +R QA A Sbjct: 154 LTPREKEVLRLIAAGANNKEIAQQLYISEGTVKNHVTNILNRLSLRDRTQAAIIA 208 >gi|306825879|ref|ZP_07459218.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432240|gb|EFM35217.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 199 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KL+A NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLNAGNRTEAANIAKESGWL 199 >gi|294628486|ref|ZP_06707046.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] gi|292831819|gb|EFF90168.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] Length = 231 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172 L +G+++ + L + + A G + L + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGEEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 >gi|229131918|ref|ZP_04260783.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] gi|228651509|gb|EEL07479.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] Length = 207 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A NLT++E L+ GY ++EIA +G++ TV A+L + KL +R +A+A +I Sbjct: 141 AENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAHLTNIYNKLGVNSRSEAVAVSI 200 Query: 230 RFGYI 234 I Sbjct: 201 ERKLI 205 >gi|119492591|ref|ZP_01623809.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119453060|gb|EAW34230.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 211 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 41/83 (49%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 VI + + NL+ RE L+L +G T+ +IAE+L LS +T+ ++ Sbjct: 128 VAKCVINHLQPPTPQSDLKSTNLSPREFEVLKLMVEGKTNVKIAEELYLSPNTIKTHVRG 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 188 IMNKLSVDDRVQAAVTALRLGLV 210 >gi|150395470|ref|YP_001325937.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150026985|gb|ABR59102.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 245 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 81/216 (37%), Gaps = 18/216 (8%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF--LF 78 L ++ + A ++ L + + D ++ D + +I L Sbjct: 46 LAVLTEYVGATHYLLARHDVSQD---GGLDFVVCSDWPFDIVRRLSGIIAGLNSKTTELE 102 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + L P+ + + + + A +G + ++ E Sbjct: 103 KCRAQLQPVFHAMPDDIGLP------------RGVSRSYCAVTFSIGPTRFSLMLLFPED 150 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 ++L+ + + + V + ++ + LTERE CL +G TS+EIA L Sbjct: 151 VILSQDALRDVAVLAGYVASHKIKADVRHDRECE-LTERELECLFWIAEGKTSDEIAVIL 209 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+S +T+N Y+ S K R +AIA A+R + Sbjct: 210 GISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245 >gi|85860164|ref|YP_462366.1| two-component response regulator [Syntrophus aciditrophicus SB] gi|85723255|gb|ABC78198.1| two-component response regulator [Syntrophus aciditrophicus SB] Length = 215 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 37/70 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + A +LT RE LQL +G T++EIA L +SV TV + + KL+ + Sbjct: 144 ETTTENAPSLTAREREMLQLMAEGMTAKEIAAHLFVSVKTVETHRRNIAQKLNINRAAEL 203 Query: 225 IAKAIRFGYI 234 I AIR G + Sbjct: 204 IKYAIREGLV 213 >gi|47567457|ref|ZP_00238169.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47555859|gb|EAL14198.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 218 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA Sbjct: 149 PEQLAQLTEREVDILREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIY 208 Query: 228 AIRFGY 233 A+R+G Sbjct: 209 AVRYGI 214 >gi|297159346|gb|ADI09058.1| putative two component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 233 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 2/104 (1%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYT 190 + + + ++ + + S LT+RE + L G + Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPMLPGAAGGTGPGGSARPELERLTDREREVMLLVAQGLS 178 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA +L LS TV ++G KL+ +R+Q + A G + Sbjct: 179 NGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYESGLV 222 >gi|291300052|ref|YP_003511330.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569272|gb|ADD42237.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYT 190 T+ ++A + A ++I +F K ++ + +LT+RET L L G + Sbjct: 115 LTAAVRVIAAGEALLAPSVTRRLIAEFARTRPKATATSATLASLTDRETEILTLIARGLS 174 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA +L ++ TV ++G KL +R QA+ A G + Sbjct: 175 NREIAGRLVVAEQTVKTHVGRIFAKLGLRDRAQAVVCAYETGLV 218 >gi|163758000|ref|ZP_02165088.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284289|gb|EDQ34572.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 224 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 17/216 (7%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI--LIETYGDDFLF 78 LI + A+ + + + + R N+ D + + Sbjct: 24 FDLISDYTGAKCYLVARYD---HYSDRHHDFVLTSNWPFDLVRNLGAGLVDAQARTSEVS 80 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 P+ + + V L P +G + + + Sbjct: 81 RCLHAFEPLFQDVDGVAVNLPENLSPRVCL-----------VPYNVGKVRLLMALLFEKD 129 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 ++++ I +A A F E+ S + LT+RE CL G+G TS+EIA + Sbjct: 130 AFVSHDRIRDAALAASYHAVHFTEITTTSDSLSD-LTDREVECLSWIGEGKTSDEIALII 188 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+S +TVN Y+ S K A R +A+A A+R I Sbjct: 189 GISRNTVNNYITSIMNKTGAKTRSEAVAFAVRQRII 224 >gi|149202587|ref|ZP_01879559.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149143869|gb|EDM31903.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 251 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 10/228 (4%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILI 69 +++++EL L N+D ++ Sbjct: 13 AATIEELWDHHTQFMAEYGFDRLIYGYTRYRTATSLGDPDDFLMLTNHDPCYTNVFVGEG 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQ---EETVIESSGQLSVRLEGGLLPFAGIAFPV--RL 124 + + W ++ + + + V AG + Sbjct: 73 LYFNAPMVRWALENEGACSWSVLRHMTDSGTLTPQERRVVEFNHAHGVTAGYSISFKSFS 132 Query: 125 GFHKNGYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180 K + + + + + + E G + + L R LT R+ Sbjct: 133 PRTKGAIALTARKGVTQSEVDDLWERCGEQILALNNVAHLRILSLPYCAPGRALTLRQRQ 192 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L GDG T ++ A +GL+ TV +L A L QA+ KA Sbjct: 193 VLGWVGDGKTIQDTATIMGLTPATVEKHLRLARQALSVETTAQAVLKA 240 >gi|153832913|ref|ZP_01985580.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi HY01] gi|148870836|gb|EDL69735.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi HY01] Length = 210 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156 L + V ++ + + ++E + Q Sbjct: 71 LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHEGDKAYSQA 130 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L + + LT+RET LQ G+ +++IA++L +S TV ++ S KL Sbjct: 131 VAKYLNEREGQEDVFDTLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 190 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 191 KVPSRTAATVLYLER 205 >gi|219667264|ref|YP_002457699.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537524|gb|ACL19263.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 212 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L L G+T+ EIA L +S TV+ + + KL+ ++++ A++ Sbjct: 148 ETLTEREREILILLAKGHTNNEIAPILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKR 207 Query: 232 GYI 234 G I Sbjct: 208 GLI 210 >gi|227501858|ref|ZP_03931907.1| possible response regulator [Corynebacterium accolens ATCC 49725] gi|227077352|gb|EEI15315.1| possible response regulator [Corynebacterium accolens ATCC 49725] Length = 223 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + +LT RE LQL G ++ +I + L LS TV ++L KL +R Sbjct: 151 RLMTRVRTPRTSLTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSR 210 Query: 222 IQAIAKAIRFGYI 234 A+A A G + Sbjct: 211 TSAVAAAREQGVL 223 >gi|225350985|ref|ZP_03742008.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158441|gb|EEG71683.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 228 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 166 DRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 225 Query: 232 GYI 234 + Sbjct: 226 RIV 228 >gi|156976379|ref|YP_001447285.1| protein-glutamate methylesterase [Vibrio harveyi ATCC BAA-1116] gi|156527973|gb|ABU73058.1| hypothetical protein VIBHAR_05152 [Vibrio harveyi ATCC BAA-1116] Length = 222 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + K A LT+RE + G ++++IAE+L +S +TV +L + K+ Sbjct: 142 LRRHSRPLNKTVPAI--LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKI 199 Query: 217 DAVNRIQAIAKAIRF 231 D NR+QA+ A Sbjct: 200 DVKNRVQALIWAKEN 214 >gi|153831737|ref|ZP_01984404.1| probable csgAB operon transcriptional regulatory protein [Vibrio harveyi HY01] gi|148872247|gb|EDL71064.1| probable csgAB operon transcriptional regulatory protein [Vibrio harveyi HY01] Length = 222 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + K A LT+RE + G ++++IAE+L +S +TV +L + K+ Sbjct: 142 LRRHSRPLNKTVPAI--LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKI 199 Query: 217 DAVNRIQAIAKAIRF 231 D NR+QA+ A Sbjct: 200 DVKNRVQALIWAKEN 214 >gi|99081053|ref|YP_613207.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99037333|gb|ABF63945.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 251 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 12/239 (5%) Query: 1 MSENTLTGKKSSSLQEL-SPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYD 58 +SE + +++EL + + YT+ L N+ Sbjct: 3 LSEYLQQLTQFKTIEELWRAHVQQMSR-YGFDRLLYGYTLFKTRTSLGDPDDFVILTNHC 61 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPF 115 + L W+ + + +++ + + Sbjct: 62 PEYLQGFLADGLYAHAPMLTWALENEGHASWRVSQEMAAQGLLDKQARKVQDFNQSMGVH 121 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANE---VIIEAHGACYQVITDFLELFKKRSS--- 169 AG + I + L + I HGA ++ + L Sbjct: 122 AGYTISFNSASERFKGAISLAARADLDQDGIDQIWAEHGADIVLMNNVAHLKILTLPYHA 181 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+R+ LQ GDG T+++IA +GL+ T+ +L A L QA+ KA Sbjct: 182 PKRGLTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARATLSVETTAQAVLKA 240 >gi|182415183|ref|YP_001820249.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842397|gb|ACB76649.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 212 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 12/152 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + S L + + + + + E+ +E Sbjct: 61 LDLRMHGMSGVDAIRALRSEFGNVRVLVYSNYAAGEEVYQALKAGASGFVVKEMALERLL 120 Query: 152 ACYQVITD---------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + + + ++ + L+ RE L+L G +++EIA +L + Sbjct: 121 EAIRKVHAGEQYVPPEIAMRMGERLMA---QLSPRELDVLKLVAKGRSNKEIAAELHVVE 177 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T ++ + KL +R QAI A+R G I Sbjct: 178 GTAKIHVANILTKLGVSDRTQAIVVAVRRGII 209 >gi|218248856|ref|YP_002374227.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061918|ref|YP_003139806.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169334|gb|ACK68071.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256592084|gb|ACV02971.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 96 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L L G T+ EIAE+L +S TV+ ++ + K NR++ + A+++G Sbjct: 11 SLSGREIEILDLVATGLTNLEIAEELEISKRTVDNHISNILTKTKTENRVELVRWALQWG 70 Query: 233 YIC 235 IC Sbjct: 71 KIC 73 >gi|94971316|ref|YP_593364.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553366|gb|ABF43290.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 218 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 36/76 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 K LT RE L+L +G + +EIA LGLSV TV A+ + KLD Sbjct: 137 RARVRDAKLRPRISTLTPREREILKLLAEGNSVKEIAVLLGLSVKTVEAHKFNLMRKLDI 196 Query: 219 VNRIQAIAKAIRFGYI 234 N+ Q + AI+ I Sbjct: 197 HNKAQLVTYAIQKKII 212 >gi|33239629|ref|NP_874571.1| transcriptional regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237154|gb|AAP99223.1| Transcriptional regulator, contains HTH motif [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 93 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE ++L G T++EIA+KL +S TV+ ++ + K + NR+ + A+ G Sbjct: 13 SLSAREMEIIELVASGLTNQEIAQKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 72 Query: 233 YIC 235 IC Sbjct: 73 KIC 75 >gi|56963198|ref|YP_174929.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909441|dbj|BAD63968.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 92.2 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ L+ ++ S +LT RE + L G+G ++EIAE+LGLSV TV Sbjct: 129 VAAKVVPTLLQ-NQEEPSIDPSLTPRERAILTCIGEGLNNKEIAERLGLSVGTVKNQTSH 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R Q AIR + Sbjct: 188 IFDKLALRDRTQLAIYAIRHRLV 210 >gi|260775603|ref|ZP_05884500.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608784|gb|EEX34949.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] Length = 215 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 144 EVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 E+I + +V L + + + A +LT RE L+ G ++ +IAE L Sbjct: 120 EIINSQNWLPRKVAAQLLHYYRHVVLSQTAPATVDLTSREIQILRCLKTGASNMQIAEDL 179 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +S TV ++L KL NR+QAIA A + Sbjct: 180 FISEFTVKSHLYQIFKKLSVKNRVQAIAWANQH 212 >gi|259502947|ref|ZP_05745849.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|259169072|gb|EEW53567.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM 16041] Length = 217 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L GY++ EI+EKL +S TV A+ + + KL +R++ + AI Sbjct: 155 LSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVELVRYAIHHHL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|149007477|ref|ZP_01831120.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147761049|gb|EDK68018.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] Length = 199 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|322392560|ref|ZP_08066020.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321144552|gb|EFX39953.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 199 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L G +++EIA++L LS TV Y+ + KL A NR Sbjct: 127 ELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADQLYLSNGTVRNYMTNILSKLGASNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAAKTAEEEGWL 199 >gi|299531690|ref|ZP_07045095.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298720406|gb|EFI61358.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 228 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LTERE L+L G T++EI+ L +S TV ++ + K+ R QA+ A+ Sbjct: 166 ESLTEREIDILKLIAQGKTTQEISSYLEISPLTVATHVKNIYGKMQVRTRAQAVRYAMLT 225 Query: 232 GYI 234 G I Sbjct: 226 GII 228 >gi|269836188|ref|YP_003318416.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785451|gb|ACZ37594.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 216 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAY 208 G +V+ +F R A LTERE L+L G +++++A++L +S +TV + Sbjct: 126 GLARKVLNEFARPAAPRPERTAEELTEREREVLELLVQGVTSNKDLADRLFVSENTVKYH 185 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L + KL NR Q IA A+R G + Sbjct: 186 LRNILNKLHLQNRAQVIAYALRHGLV 211 >gi|87301837|ref|ZP_01084671.1| possible transcriptional regulator [Synechococcus sp. WH 5701] gi|87283405|gb|EAQ75360.1| possible transcriptional regulator [Synechococcus sp. WH 5701] Length = 89 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE ++ G T++EIA +L +S TV+ ++ + K A NR+ + A+ G Sbjct: 13 SLSERELEIIERVATGLTNQEIALELMISKRTVDNHVSNIFTKTGAKNRVALLNWAMDNG 72 Query: 233 YIC 235 IC Sbjct: 73 KIC 75 >gi|315645472|ref|ZP_07898596.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315278950|gb|EFU42260.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 200 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 N Y++ S LA + G + + S LTERE L L Sbjct: 94 AGANAYLLKDSPSEELAASIRSIMAGRRIYASE---LVDEAYSGEENPLTEREKEVLSLI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L ++ TV Y+ KL NRI+AI + G+ Sbjct: 151 ADGKNTKEIATQLFITTGTVRNYISVILDKLGVSNRIEAITRFKEKGW 198 >gi|302542030|ref|ZP_07294372.1| two-component system, regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302459648|gb|EFL22741.1| two-component system, regulatory protein [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 2/103 (1%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYT 190 + + + + + +D E ++ + LT RE L L G + Sbjct: 114 VMSGDAGLSPQVQRRLLEWLAERGGSDRDEPERETAAGPLPDGLTPREAEVLALVAGGLS 173 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + EIA +L ++ TV ++ + K +R QA+ A R G Sbjct: 174 NPEIARRLMIAPATVKTHINNLFAKTAVRDRAQAVRYAYRHGI 216 >gi|218288243|ref|ZP_03492542.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218241602|gb|EED08775.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 224 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + S A L+ RET L L GYT+ E+A+ L +SV TV + Sbjct: 127 YLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQ 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 ++ +R + A + G + Sbjct: 187 HIMRRIGLHSRAALVRYAYQNGLV 210 >gi|117928181|ref|YP_872732.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648644|gb|ABK52746.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 216 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 55/166 (33%), Gaps = 11/166 (6%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGYV 132 + P I S ++ L + + G + G Sbjct: 46 ACATRHQP-DVVVIDVRLPDGSGLDVARELRRQRPDVGIVVLTMYAGDEQLFGALEAGAS 104 Query: 133 IFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 F ++ + V H + + ++ + + LT RE LQL DG Sbjct: 105 AFVAKDAPAEDVVSAARHALVSPRSFSAADLAGAMRRRMNPSGPQLTPREREVLQLMADG 164 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA +L +S T ++ KL A NR QA+ AIR G + Sbjct: 165 LGVSAIARQLFISESTTKTHVSKLYEKLGAANRAQALMAAIRLGLL 210 >gi|322377555|ref|ZP_08052045.1| DNA-binding response regulator [Streptococcus sp. M334] gi|321281320|gb|EFX58330.1| DNA-binding response regulator [Streptococcus sp. M334] Length = 199 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G++++EIA+KL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIAKESGWL 199 >gi|298244698|ref|ZP_06968504.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552179|gb|EFH86044.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%) Query: 129 NGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + +E + A + H +V+ + K S L+ERE L Sbjct: 108 EAALSELTEAIRKAARGEVVLHPHVAARVLQELRGTNKDASKLYATLSEREREVLNWIAQ 167 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IA +L +S TV +++ + KL +R QA R G + Sbjct: 168 GLSNGQIAARLVISERTVKSHVNNILGKLQVSDRTQAAIYVWREGMV 214 >gi|284028851|ref|YP_003378782.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808144|gb|ADB29983.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 252 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR + V S ++L V +E V + + L+ERE Sbjct: 129 VRAVHRGDSLVDPASTRVLLERCVELERQVGADPVAAAPHAADGRWTGLLAQLSERERDV 188 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ ++A KL +S TV ++ S KL +R+QA+ A G + Sbjct: 189 LVWMARGLSNRDLANKLFVSETTVKTHVSSVLSKLGLSSRVQAVVVAYEAGVV 241 >gi|298491036|ref|YP_003721213.1| LuxR family transcriptional regulator ['Nostoc azollae' 0708] gi|298232954|gb|ADI64090.1| transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 91 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 39/73 (53%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + S +L++RE + L G T++EIA KL +S TV+ ++ + K NR+ Sbjct: 1 MAASESGTPVSLSDRELQIIDLVAGGLTNQEIAAKLEISKRTVDNHISNILTKTKTDNRV 60 Query: 223 QAIAKAIRFGYIC 235 + A+++G +C Sbjct: 61 ALVRWALQWGKVC 73 >gi|205360584|ref|ZP_02684908.2| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348365|gb|EDZ34996.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 248 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 91 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + A LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|298245147|ref|ZP_06968953.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552628|gb|EFH86493.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G +++EIA+ L +S TV ++ S KL +R A+ A+R G Sbjct: 163 PLSSREVEILDYIARGNSNKEIAKSLKISDQTVKNHITSILKKLSVSDRTAAVVHALRHG 222 Query: 233 YI 234 +I Sbjct: 223 WI 224 >gi|290961496|ref|YP_003492678.1| two component response regulator [Streptomyces scabiei 87.22] gi|260651022|emb|CBG74140.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 213 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178 +R G Y + L A + H +V L + S R +LTERE Sbjct: 97 LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVADALLSQEEANSGQGRGGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 KEVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 211 >gi|257057888|ref|YP_003135720.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587760|gb|ACU98893.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 216 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 151 GACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G V+ ++ + LTERET L+L G T+++IA++L +S TV + Sbjct: 128 GLAGMVLGEYRRMADSPDMGDPPPRLTERETEVLRLVAKGLTAKQIADRLVISHRTVENH 187 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + S KL NR++ AI G Sbjct: 188 VQSTLRKLQLHNRVELARYAIEHGL 212 >gi|295697536|ref|YP_003590774.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295413138|gb|ADG07630.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 278 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K LT+RE LQL +G ++ +IA+ L LS TV ++ S KL +R Q Sbjct: 205 EDKAPGIVAPLTKREFEVLQLLAEGRSNRDIAKALVLSEKTVKNHVASILDKLVVRDRTQ 264 Query: 224 AIAKAIRFGYI 234 A+ A+R G++ Sbjct: 265 AVLVALRRGWV 275 >gi|156977745|ref|YP_001448651.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] gi|156529339|gb|ABU74424.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] Length = 217 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L+ +++ G + EL K LT RE L G ++ +IA+ L + Sbjct: 128 LSRDILNRLVGYLVNLNHTVTELDTKL---EIELTRREMQVLTALCQGGSNLDIADSLFV 184 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 S HTV ++L S KL+ NR+QA+A A R Sbjct: 185 SEHTVKSHLYSIFRKLEVKNRMQAVAWAKRN 215 >gi|148272451|ref|YP_001222012.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830381|emb|CAN01316.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 232 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 8/139 (5%) Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFH-------KNGYVIFTSEFLMLANEVIIEAHGACYQ 155 + AG + F V+ + + + +I Sbjct: 90 FDLDEYAFAGLRAGASGFLVKDTRPEHLMEAIRAVADGDAAISPRVTRRMIELLGPTMPA 149 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 R LT RE L +G T++EIA +L LS TV ++G K Sbjct: 150 TGGAAGTGEGAADPRLRPLTARELEVLTALAEGLTNQEIAGRLYLSESTVKTHVGRVLAK 209 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L+ +R+QA+ A G + Sbjct: 210 LEVRDRVQAVILAYDCGLV 228 >gi|134097553|ref|YP_001103214.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910176|emb|CAM00289.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179 L +G+++ + + + I A G L A LTERE Sbjct: 92 LRAGASGFLLKRTRPEEIVQAIRIAAQGESLLFPAAIRRLVARRAPAARRPAPTLTEREA 151 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L + + TV ++G+ KL A +R QA+ A G++ Sbjct: 152 EVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGFV 206 >gi|557022|gb|AAA50358.1| putative transcription factor; similar to E. coli NarL, Swiss-Prot Accession Number P10957 [Nostoc sp. PCC 7120] Length = 219 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 69/224 (30%), Gaps = 29/224 (12%) Query: 11 SSSLQELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + QEL P L I +++ +Y I+S Q I + + Sbjct: 10 IRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSI------PAVCLESNPVGR 63 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 H L P W+ + P+ Sbjct: 64 YVVERHAPAHEQLILTPEDWKD--------------FCPRHDHG--HVMTGPIICDGRLI 107 Query: 130 GYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F + A + + C + L +SS+ LT RE + Sbjct: 108 GTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSPSPLTPRELQIAE 167 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L G T+ EIAEKL ++ ++V L KL R + +A+ Sbjct: 168 LVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVAR 211 >gi|291009185|ref|ZP_06567158.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179 L +G+++ + + + I A G L A LTERE Sbjct: 109 LRAGASGFLLKRTRPEEIVQAIRIAAQGESLLFPAAIRRLVARRAPAARRPAPTLTEREA 168 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L + + TV ++G+ KL A +R QA+ A G++ Sbjct: 169 EVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGFV 223 >gi|222082720|ref|YP_002542085.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727399|gb|ACM30488.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 217 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 4/114 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSSA---ARNLTERETS 180 G + E L+ +++++ ++ L + S A LT RE Sbjct: 99 GASGYLLKDVSRESLLRTIDIVLDGQAFFDADLMCKMLARIDRESPAEMVIERLTNRERE 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T++ IA L +S TV ++ KL +R QA AI+ G + Sbjct: 159 ILCSLTTGETNKGIARALSISPGTVKVHVERILSKLGVNDRTQAAVLAIQAGLL 212 >gi|271963222|ref|YP_003337418.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506397|gb|ACZ84675.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L ++ A G + L + R+ + +L+ RE L L Sbjct: 96 AGAAGYLLKDTSRADLLAAIVSAARGETVLSPSVATRLVTRMRAPVSESLSPREAEVLSL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +I ++L +S TV +L KL +R A+ A+ G + Sbjct: 156 VARGLTNAQIGKELFISETTVKTHLLRVFGKLGVSDRTAAVTTALDRGLL 205 >gi|108757533|ref|YP_632250.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108461413|gb|ABF86598.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 246 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 1/111 (0%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + L+ V +A + + + L++RE LQ Sbjct: 134 RAGGTVIQPNLARRLLRHFRVEPDASPLISPPAAPEPSASDLPQEPLLKPLSDREREILQ 193 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ E A L LS T+ +L KL+ NR++A+ + IR G I Sbjct: 194 LIAKGVSNSEAARLLDLSKATIRTHLEHIYRKLEVTNRVEAVTEGIRKGLI 244 >gi|325283032|ref|YP_004255573.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314841|gb|ADY25956.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 219 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 42/83 (50%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ F +L+ RE L+ A G +++EIA LG+S TV +LG+ Sbjct: 132 IARKVMARFSAQAPAEMDLTEDLSPRELEVLRAAARGGSNKEIARALGISPRTVQVHLGN 191 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R +A+ IR G++ Sbjct: 192 VFSKLNVGSRTEAVLAGIRRGWV 214 >gi|256394338|ref|YP_003115902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360564|gb|ACU74061.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 34/82 (41%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ + A LT RE L L G + EIA L L+ TV ++ + Sbjct: 135 VATALLDSGSNGAADQGPQAPALTAREREVLVLIAQGRANREIARALVLAEKTVKTHVSN 194 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 +KL +R QA A+R G Sbjct: 195 ILMKLGVADRTQAALWAVRHGI 216 >gi|94985726|ref|YP_605090.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556007|gb|ABF45921.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 194 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q+ R LT RE+ L L GY+++EIA+ LG+S TV +L Sbjct: 109 LARQLRDIVAHPDVDRLPQVDVPRLTPRESEVLPLLAQGYSNKEIAKNLGVSPDTVKDHL 168 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R +A+++A G + Sbjct: 169 ARLYAKLDAGDRTEAVSRARSIGLL 193 >gi|312138083|ref|YP_004005419.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|325675013|ref|ZP_08154700.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|311887422|emb|CBH46734.1| LuxR family two component system response regulator [Rhodococcus equi 103S] gi|325554599|gb|EGD24274.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 220 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L + +G ++ +I +L L TV +++ + KL NR++A +A Sbjct: 154 PDLSRLTEREREVLTVLAEGESNADIGRRLFLGETTVKSHVSAIFEKLGVRNRVEAALQA 213 Query: 229 IRFGYI 234 R G + Sbjct: 214 YRAGLV 219 >gi|271969975|ref|YP_003344171.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513150|gb|ACZ91428.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L L G +++EIA +L LS T ++ KL A +R Q + A Sbjct: 150 PEFNGLTEREREVLTLVAGGLSNDEIAARLVLSPATAKTHVSRIMTKLHARDRTQLVVLA 209 Query: 229 IRFGYI 234 G + Sbjct: 210 YEAGVV 215 >gi|296128146|ref|YP_003635396.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296019961|gb|ADG73197.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 225 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 42/84 (50%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+T + A+ LT RE L L G ++EEIA +L L V TV ++L Sbjct: 138 RVLREVVTRRRTQPVTAARASELLTPRELDILLLLAQGMSNEEIARELYLEVSTVKSHLA 197 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 A KL +R+QA+ A + G + Sbjct: 198 RAMPKLGVRSRLQAVVWAYQNGIV 221 >gi|319644871|ref|ZP_07999104.1| sensor regulator [Bacillus sp. BT1B_CT2] gi|317392680|gb|EFV73474.1| sensor regulator [Bacillus sp. BT1B_CT2] Length = 199 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LT+RE L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|224542843|ref|ZP_03683382.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM 15897] gi|224524239|gb|EEF93344.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM 15897] Length = 224 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++ E +Q G G +++EIA+KL LS TV YL S KL+ +R Q A+ Sbjct: 155 ETLSKPEWKVIQHVGYGLSNKEIAQKLFLSEGTVRNYLSSILSKLNLRDRTQLAIWAVES 214 Query: 232 GY 233 G Sbjct: 215 GL 216 >gi|161506311|ref|YP_001573423.1| hypothetical protein SARI_04507 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867658|gb|ABX24281.1| hypothetical protein SARI_04507 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 257 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N + LHN + D Sbjct: 48 LQSIAQLIPLSSAVFYRVN-----DYLKPEGYVLHNISNGTHQQYLEH-FQPLDPL--SP 99 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 100 SRFGQQVITVATMTPGICARHRLYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 158 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + + + A LT +E + + +G +++ IA +L + Sbjct: 159 FSSEERLRAQAVQPLLGLAIHDSLQGDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 218 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 219 SLSTVKTHLRNIFAKTEVINRTELVSR 245 >gi|52081161|ref|YP_079952.1| two-component response regulator responsible for cold induction of the des gene [Bacillus licheniformis ATCC 14580] gi|52786544|ref|YP_092373.1| YocG [Bacillus licheniformis ATCC 14580] gi|52004372|gb|AAU24314.1| two-component response regulator responsible for cold induction of the des gene [Bacillus licheniformis ATCC 14580] gi|52349046|gb|AAU41680.1| YocG [Bacillus licheniformis ATCC 14580] Length = 199 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LT+RE L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|317506595|ref|ZP_07964387.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255104|gb|EFV14382.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 218 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLT 175 L G+++ S L V A +V+ + ++ A+ LT Sbjct: 97 LRAGAAGFILKDSPAEDLIWAVRAVAGGDGFLDPAVTARVLAAYRTAPSARQKQASDKLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G + EIAE+L +S TV +++G KL +R AI A G + Sbjct: 157 ARELEVLRLIARGANNTEIAERLFISEVTVKSHIGRIFAKLGLRDRAAAIVYAYDQGVV 215 >gi|304404571|ref|ZP_07386232.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304346378|gb|EFM12211.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK--RSSAARNLT 175 GYV+ + L + A G Y +++ D++E K+ +L+ Sbjct: 96 HAGAAGYVLKNAPHEELLTAIRSVARGDAYLYPTATKRLMNDYVERMKRGESGDVYHSLS 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L L GY ++EIAE+L +SV TV + + KL R + I A++ G + Sbjct: 156 DREKEVLGLTAKGYANKEIAEQLVISVKTVETHKSNVMEKLGLKTRPELIKYAMKKGLL 214 >gi|297155663|gb|ADI05375.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Query: 138 FLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 ++ A + ++ T + R+ LT RE L+L G G ++ EIA Sbjct: 116 RMVAAGDSLLAPSVTRTLIAAFTSGAVVPPPRTERLDVLTARERETLRLLGCGLSNAEIA 175 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S HTV ++ + KL +R+QA+ A G + Sbjct: 176 AALVVSEHTVKTHVSNILTKLGLRDRVQAVIAAYETGMV 214 >gi|294628886|ref|ZP_06707446.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] gi|292832219|gb|EFF90568.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] Length = 222 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ Sbjct: 151 DGPEPGAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVEL 210 Query: 225 IAKAIRFGY 233 + AI G Sbjct: 211 VRYAIERGL 219 >gi|258652230|ref|YP_003201386.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555455|gb|ACV78397.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 212 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +LT RE+ LQL G G ++++ A +LG+SVHTV ++ KL A +++ Sbjct: 129 IASRPRPPGGDLTPRESEVLQLVGAGRSNQQTARELGISVHTVRNHVQHILDKLGAHSQL 188 Query: 223 QAIAKAIRFGYI 234 +A+A A R G + Sbjct: 189 EAVAIASRLGLL 200 >gi|302550880|ref|ZP_07303222.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468498|gb|EFL31591.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 228 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +R+ + + +++ Q D + R +LT RE Sbjct: 118 IRIAAGGQALLSPAATTGLISR-------FLAQQDPDDAGDRDPARGERLASLTGREREV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G++++EIAE+L +S TV ++ A KL A +R Q + A G + Sbjct: 171 LVLVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 223 >gi|225873707|ref|YP_002755166.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794522|gb|ACO34612.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 7/149 (4%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML----ANEVIIE 148 + + R+ + G + L + + Sbjct: 62 DLRLPRMNGVEAITRIREESPGARIVVLTTFDGDEDIYRALQAGARGYLLKGMDADDLTA 121 Query: 149 AHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + + + +R + + LT RE L+L G ++ EIA L +S TV Sbjct: 122 AIRSVHAGKSRIPTVVAERLAERMSGSELTARELDVLRLIVQGRSNREIAADLHISEATV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R QA A++ G + Sbjct: 182 KTHINNLLSKLGVSDRTQAATTALQRGLV 210 >gi|319441505|ref|ZP_07990661.1| LuxR family two component transcriptional regulator [Corynebacterium variabile DSM 44702] Length = 232 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + + LT RE L L G G +++EIAEK +S HT ++ K++A +R Sbjct: 157 VSEDAAKDLARLTGREQEVLLLVGQGLSNQEIAEKFFISPHTAKTHVNRIMSKINAHDRA 216 Query: 223 QAIAKAIRFGYI 234 Q + A G + Sbjct: 217 QLVILAYESGLL 228 >gi|297560440|ref|YP_003679414.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844888|gb|ADH66908.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 4/198 (2%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96 ++ + ++ + D + + G + S P+ + Sbjct: 27 HLSVVGEASDGREAVRATRGLLPDVVLMDVRMPGMDGIEATRQIVSWARPLGHRVRVLAL 86 Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 + +V + +G V ++ + + + + Sbjct: 87 TTFDLDEYAVEVLRAG--ASGFLLKDAPPAELVSAVEVVADGAAAISPAV--LNRLLDRF 142 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 A LT RE L+L G+++ EIA L L TV +++GS KL Sbjct: 143 APLLPSASPATEPAEDTLTAREHEVLRLLARGWSNAEIAAHLVLGETTVKSHVGSILTKL 202 Query: 217 DAVNRIQAIAKAIRFGYI 234 + +R+QA+ A G + Sbjct: 203 ELRDRVQAVVYAYEHGLV 220 >gi|116329279|ref|YP_798999.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330114|ref|YP_799832.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122023|gb|ABJ80066.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123803|gb|ABJ75074.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 221 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L +G ++E I + LG+S TV + + KL+ + AIR G Sbjct: 159 LSDREREILKLVAEGNSNESIGKILGISPATVKVHRANIMKKLNLHKVADLVMYAIRAGL 218 Query: 234 I 234 I Sbjct: 219 I 219 >gi|329297529|ref|ZP_08254865.1| LuxR family two component transcriptional regulator [Plautia stali symbiont] Length = 198 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 11/134 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V ++ E+++ Q V Sbjct: 61 LRHEGVAACILVLTVSDARSDIYAMMDAGADGYQLKDSEPELLLAQVMRGAQGENVFREV 120 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++L + ++ R LTERE LQ G +++EIA L +S TV ++ + KL Sbjct: 121 VAEYLATRQPSANPFRQLTERELDVLQEVARGLSNKEIAATLHISEETVKVHIRNLLRKL 180 Query: 217 DAVNRIQAIAKAIR 230 D +R+ A + Sbjct: 181 DVRSRVAATVLWLE 194 >gi|271961678|ref|YP_003335874.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504853|gb|ACZ83131.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S + V A G L + R+ A L+ RE + L L Sbjct: 97 AGAIGYLLKDSPREEVFRAVRAAALGETVLSPAVAARLLNRVRTPAPAELSGRERTVLAL 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++E A L +S TV +L KL +R A+A A G + Sbjct: 157 VARGSTNKEAAAALFISETTVKTHLAHIYTKLGVSDRASAVAVAYSRGLL 206 >gi|330467719|ref|YP_004405462.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810690|gb|AEB44862.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 211 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 39/83 (46%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + I + ++LTERE L+L GY++ EIA L L+ TV ++ Sbjct: 128 RMLRAIRSGPSPAGPDAPTVQSLTEREREVLRLVAHGYSNREIAGALFLAEGTVKNHVSM 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R A+ +A+ G + Sbjct: 188 ILTKLGARDRTNAVLRALHEGIL 210 >gi|288962256|ref|YP_003452551.1| two-component response regulator [Azospirillum sp. B510] gi|288914522|dbj|BAI76007.1| two-component response regulator [Azospirillum sp. B510] Length = 240 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 40/102 (39%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 F + + L + E + + + A LT+RE L + G T++ Sbjct: 130 SFVPKDVALDLMHMTEMSLDIDEAEESEAPALEGEGAPASPLTDREQQVLSMLATGATNK 189 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI L L TV + KL A NR A+ +A + G + Sbjct: 190 EIGRNLSLQEVTVKLHTRRILRKLGARNRTDAVRRAQQAGLL 231 >gi|239944210|ref|ZP_04696147.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990666|ref|ZP_04711330.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447682|ref|ZP_06587072.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] gi|291350629|gb|EFE77533.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEI 194 ++ + + ++ + ++ R+ LTERET L L G ++ EI Sbjct: 120 RVVASGDALLSPNITKRLIVEFSRTAGAPRAPLKERVGDLTERETEVLTLIASGLSNAEI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++G VKL +R QA A G + Sbjct: 180 ARQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219 >gi|332702953|ref|ZP_08423041.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332553102|gb|EGJ50146.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 225 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 +V+ LE +R+ + LT+RE ++L DG+TS IA KL ++ TV Sbjct: 131 AISPKVVQKLLEFSTRRAQMTDSAYGSLTQREQQIMRLLADGWTSSAIAGKLFITRKTVE 190 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL N + A R G I Sbjct: 191 NHRANIMSKLGLKNLADLVRYAARLGLI 218 >gi|307707707|ref|ZP_07644186.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307616205|gb|EFN95399.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 199 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G++++EIA+KL LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|226226404|ref|YP_002760510.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089595|dbj|BAH38040.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 209 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 41/86 (47%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A A + I + A+ LT R+ L+ +G ++ EIA L +S TV A+ Sbjct: 121 AVYAGRKAIDPSIAAKLAEHVASDALTARQLEVLRSLAEGRSNIEIANTLYISEGTVKAH 180 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL A +R QA+ I+ G I Sbjct: 181 IKAILQKLGARDRTQAVTIGIKRGLI 206 >gi|221633170|ref|YP_002522395.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] gi|221156902|gb|ACM06029.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] Length = 261 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 3/100 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + I++ +V+ + S LT RE L G +++EI Sbjct: 151 GEDRLPQQILDRPHLARRVLGELQRYVVGEAGLESPDAVLTVRELQVLDCVAQGMSNKEI 210 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L ++ TV ++ S KL A +R+ I A+R G++ Sbjct: 211 AEALFITEQTVKNHMTSILRKLGAQDRVDVILAAVRQGWV 250 >gi|54308044|ref|YP_129064.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum SS9] gi|46912470|emb|CAG19262.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum SS9] Length = 208 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156 + + + + V ++ + +I + Sbjct: 71 MRAEGILASIVVLTVSDSRSDVKALVAAGADGYLLKDTEPDELISLLKQALCGGKAYSDI 130 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + LE ++ LT+RET LQ GY +++IA+ L +S TV ++ S KL Sbjct: 131 VREHLESNTEQDCLLSLLTDRETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKL 190 Query: 217 DAVNRIQAIAK 227 +R A Sbjct: 191 QVKSRTAATVL 201 >gi|313158308|gb|EFR57710.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 211 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 2/142 (1%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY-VIFTSEFLMLANEVIIEAHGAC 153 E + L + + + V+ G + + + V+ Sbjct: 68 ERALARRPDLRIITLSMFGEESYYSRMVQAGARGFLLKDSDIGDVIEAIDAVMSGGSYFS 127 Query: 154 YQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q+++ + + L+ RE L G +++EIA++L +S TV+ + + Sbjct: 128 PQLLSSLTGRMRTRDDVPDEQLSVREREILVAVCRGLSNQEIADELFISKRTVDKHRANI 187 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 K N + AIR G + Sbjct: 188 LEKTGCKNTASLVVYAIRNGIV 209 >gi|312196323|ref|YP_004016384.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227659|gb|ADP80514.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 221 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----------FKKRSSAARN 173 L +G+++ L V + A G + L + Sbjct: 96 LRAGASGFLLKDVRRDELVRAVRLVAAGESLLAPSVTRRLIADVVGRGAARPALARRLDE 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE+ L+L G G ++ EIA L +S HTV +++ S KL +R QA+ A G Sbjct: 156 LTERESETLRLLGRGLSNSEIAATLVVSEHTVKSHVSSVLTKLGLRDRAQAVVFAYESGL 215 Query: 234 I 234 I Sbjct: 216 I 216 >gi|307709859|ref|ZP_07646308.1| DNA-binding response regulator [Streptococcus mitis SK564] gi|307619408|gb|EFN98535.1| DNA-binding response regulator [Streptococcus mitis SK564] Length = 199 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G++++EIA+KL LS Sbjct: 108 ADLMHTLHTVLEGGKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 231 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 79/227 (34%), Gaps = 12/227 (5%) Query: 14 LQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70 + + +++ ++ F++ N+ + QQ + + + D L + Sbjct: 8 VDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVDGYQFLKQ 67 Query: 71 TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D LP+++ + + + + + L P +A L Sbjct: 68 LREDP-----RFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLLIR 122 Query: 128 KNGYVIFTSEFLM-LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +N T+E + ++T + + + +LT RE S L L Sbjct: 123 RNSKPQKTTEEGETPDIAELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVA 182 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++EIA +L SV V Y+ K +R + + A+ G Sbjct: 183 EGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|331694203|ref|YP_004330442.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326948892|gb|AEA22589.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 235 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 15/146 (10%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ------- 155 + + R+ A + + + L+ + +A G Sbjct: 88 EATRRVRAAHPGTAVVVLTTYVDDDAIVAALRAGAAGWLSKDADADAIGRALHSAADGQG 147 Query: 156 -----VITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + + LT RE L L G ++ EIA +L + T+ Sbjct: 148 TIDAGALARLVAASQPAPAGGEPPDGLTPREVEVLALIAQGLSNREIARRLVVGEATIKT 207 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ K +R QA+ A R G Sbjct: 208 HVNHLFAKAGLRDRAQAVNYAYRHGL 233 >gi|296118498|ref|ZP_06837076.1| DNA-binding response regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] gi|295968397|gb|EFG81644.1| DNA-binding response regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] Length = 206 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L ++ ++L+ RE LQ G +++++A+++ +S TV +L KL NR Sbjct: 135 LAERVGRPQQSLSAREIEILQALATGASNKQLAKQMFISEATVKTHLIHIYQKLGVDNRT 194 Query: 223 QAIAKAIRFGYI 234 A+ A I Sbjct: 195 AAVTVARERKLI 206 >gi|24379934|ref|NP_721889.1| putative response regulator [Streptococcus mutans UA159] gi|290580086|ref|YP_003484478.1| putative response regulator [Streptococcus mutans NN2025] gi|24377915|gb|AAN59195.1|AE014986_6 putative response regulator [Streptococcus mutans UA159] gi|254996985|dbj|BAH87586.1| putative response regulator [Streptococcus mutans NN2025] Length = 198 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + ++ ++ EL ++ + + L+ERE LQL G +++ IAE+L Sbjct: 103 DRSASELMATIYTVLSGQREYSPELVEEVTFDSNPLSEREQEVLQLVAKGASNQTIAEQL 162 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS T+ Y+ + KL+A NR A+ A G+ Sbjct: 163 FLSNGTIRNYMTAIFNKLNANNRTDAVRIARENGW 197 >gi|15903856|ref|NP_359406.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|116516134|ref|YP_817220.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|168495059|ref|ZP_02719202.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|221232724|ref|YP_002511878.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|15459500|gb|AAL00617.1| Response regulator [Streptococcus pneumoniae R6] gi|116076710|gb|ABJ54430.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|183575076|gb|EDT95604.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|220675186|emb|CAR69771.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|332071979|gb|EGI82467.1| response regulator [Streptococcus pneumoniae GA17545] Length = 199 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|186684363|ref|YP_001867559.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466815|gb|ACC82616.1| transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 87 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 41/73 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +S +L++RE + L G T++EIA KL +S TV+ ++ + K + NR+ Sbjct: 1 MAGGKSETPVSLSDRELQIIDLVAAGLTNQEIAGKLEISKRTVDNHISNILTKTETENRV 60 Query: 223 QAIAKAIRFGYIC 235 + A+++G +C Sbjct: 61 ALVRWALQWGKVC 73 >gi|154487087|ref|ZP_02028494.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] gi|154084950|gb|EDN83995.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] Length = 249 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 184 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 243 Query: 229 IRFGYI 234 + Sbjct: 244 YENHLV 249 >gi|168819831|ref|ZP_02831831.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343483|gb|EDZ30247.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087570|emb|CBY97334.1| Transcriptional activator protein luxR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 227 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 18 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 70 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ ++ LT +E + + +G +++ IA +L + Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215 >gi|73748496|ref|YP_307735.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669277|ref|YP_001214095.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432544|ref|YP_003462417.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|73660212|emb|CAI82819.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270225|gb|ABQ17217.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] gi|288946264|gb|ADC73961.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 224 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LTERE L++A G ++++IA++L LS T+ +L + KL +R +AI Sbjct: 153 SAVNPLTEREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYG 212 Query: 229 IRFGY 233 ++ G+ Sbjct: 213 LKRGW 217 >gi|94971954|ref|YP_593994.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554005|gb|ABF43920.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 208 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 39/91 (42%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + V V + +L L R A +L+ RE L+L G +++ IA L Sbjct: 114 DVVRRVAAGELFIQPSVASKYLHLLTTRQLGAEHLSPREEDVLRLLARGLSNKAIARDLA 173 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +S TV ++ S K+ NR +A A R Sbjct: 174 ISESTVKNHVKSILAKMQVRNRTEAALNASR 204 >gi|329938110|ref|ZP_08287561.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329302599|gb|EGG46489.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 40/119 (33%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 +G V L + Y + LT Sbjct: 101 SGFLLKDSGPERLLAAVTAVRGGDALFAPSVTRRLVEAYAGRAGHRPRDAEPPPELGALT 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G G ++ EIA++L +S TV +L KLD +R QA+ A G + Sbjct: 161 TREVEVLGLIGRGLSNLEIADRLYISEATVKTHLNRTMTKLDLDSRAQAVVVAYETGLV 219 >gi|296128716|ref|YP_003635966.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296020531|gb|ADG73767.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 219 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 4/126 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + R + + +L+ EV + Sbjct: 96 EALHAGAVGYLLKTSRPEQLTEAVLSAAAGEGLLSPEVTRAVIARAVA----ERRPARPA 151 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L L G ++EIA +L +S TV ++ + KL +R+QA+ Sbjct: 152 PQPVVPLTEREQDVLALVARGLNNDEIAAELVVSRATVKTHVSNLLAKLGLRDRVQAVVY 211 Query: 228 AIRFGY 233 A G Sbjct: 212 AHEHGL 217 >gi|257056663|ref|YP_003134495.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586535|gb|ACU97668.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 239 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--------RNLT 175 L +G+++ + L V I A G + + S+ A LT Sbjct: 116 LRAGASGFLLKNASPEDLIESVRIVARGDALLSPEVTRRVIARFSAPAVTGPTRRPSELT 175 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L L G ++ EIA +L L TV ++ KL+ +R A+ A G + Sbjct: 176 DREFEVLSLLAKGASNAEIARQLVLGETTVKTHVSRILTKLNLRDRTHAVVFAYENGIV 234 >gi|226310595|ref|YP_002770489.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093543|dbj|BAH41985.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 209 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ F + S LT RE L+L G G +++EIA++L + + TV ++ Sbjct: 128 RVAGKIMARFRHGQE--SHPHEQLTPRELEVLKLIGQGKSNQEIADELIIGIKTVKTHVS 185 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R QA Sbjct: 186 NILAKLNVEDRTQAAIY 202 >gi|186474125|ref|YP_001861467.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196457|gb|ACC74421.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 361 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 38/77 (49%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + FL + LT RE ++L G + +IA +LGLS TV ++ + KL Sbjct: 280 VRAFLPPARHIDPVFSALTRREREIVELIAGGRDNAQIAARLGLSEKTVRNHITNIFAKL 339 Query: 217 DAVNRIQAIAKAIRFGY 233 + +R QAI A + G+ Sbjct: 340 EVESRAQAIVLARKAGF 356 >gi|38234803|ref|NP_940570.1| putative two component system response regulator protein [Corynebacterium diphtheriae NCTC 13129] gi|38201067|emb|CAE50791.1| Putative two component system response regulator protein [Corynebacterium diphtheriae] Length = 212 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 140 MLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E ++ A + + T L + + +LT RE L+L G ++ +I Sbjct: 113 DAPPEELLAAVRSAAEGDTALSPTVANRLMSRVRAPRNSLTPRELEVLKLVAGGSSNRDI 172 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV ++L KL +R A+A A G + Sbjct: 173 GRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGVL 212 >gi|163847483|ref|YP_001635527.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222525334|ref|YP_002569805.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668772|gb|ABY35138.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449213|gb|ACM53479.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus sp. Y-400-fl] Length = 916 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L+L +G +++EIA L +++ TV +++ + KL +R QA+A+ R Sbjct: 853 EPLSQREIEVLRLMAEGRSNQEIAGHLIIAISTVKSHVNNIFSKLGVASRTQAVARGRRL 912 Query: 232 GYI 234 G I Sbjct: 913 GLI 915 >gi|297563570|ref|YP_003682544.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848018|gb|ADH70038.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G ++ EIA L +S TV ++ KLD +R+QA+ A R G Sbjct: 158 LTPRELEVLRLIANGLSNGEIAASLFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|297562061|ref|YP_003681035.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846509|gb|ADH68529.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 37/77 (48%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + R A LT RET L+L G ++IA++LG+S TV ++ + KL Sbjct: 140 YRRLSSADRSREPEAPELTPRETEVLRLVAKGLAYKQIAQRLGISHRTVQNHVQNTLTKL 199 Query: 217 DAVNRIQAIAKAIRFGY 233 NR++ + AI G Sbjct: 200 HLHNRVELVRYAIDRGL 216 >gi|182440789|ref|YP_001828508.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469305|dbj|BAG23825.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 224 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA----R 172 L +G+++ + + LA V I A G ++I +F L Sbjct: 96 LRAGASGFLLKNASGVELAEAVRIVAAGEALLSPEITKRLIAEFSRLSTSTKRPTQVRID 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L L G ++ EIA +L ++ TV ++G KL +R QA A G Sbjct: 156 ELTHRETEVLALVAQGLSNAEIAGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|56696847|ref|YP_167209.1| ATP-dependent transcription regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56678584|gb|AAV95250.1| autoinducer-binding transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 249 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 62/227 (27%), Gaps = 10/227 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIE 70 +L+EL N L N+D D Sbjct: 12 RTLEELWDGHTRQMAEYGFDRLLYGYTNYRTATSLGDPEDFVILTNHDQSYIDGFMQEGL 71 Query: 71 TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFP---VRL 124 + L W + + + + AG V Sbjct: 72 YFHAPMLHWALEHEGAGSWRMISDMLDSETLTPQERRVYAFNAEHGVTAGYTVSFTSVSA 131 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSC 181 + + + HG ++ + L R+LT R+ Sbjct: 132 RTKGAISLCARKGMSQDEVDALWRTHGQDILLMNNVAHLKIMTLPYVAPNRSLTRRQREA 191 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LQ GDG T+++IA +GL+ TV +L A L QA+ KA Sbjct: 192 LQWVGDGKTTQDIAILMGLTAATVEKHLRLAREALSVETTAQAVLKA 238 >gi|300869019|ref|ZP_07113622.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300332999|emb|CBN58814.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 228 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G +++EIA+ L ++ TV ++ + KL+ +R QA AI+ G Sbjct: 158 PLTKREQEILALVAAGKSNQEIAQILYIASGTVRVHVHAILQKLEVRDRTQAAVVAIQKG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|239980308|ref|ZP_04702832.1| two-component system response regulator [Streptomyces albus J1074] gi|291452173|ref|ZP_06591563.1| two-component system response regulator [Streptomyces albus J1074] gi|291355122|gb|EFE82024.1| two-component system response regulator [Streptomyces albus J1074] Length = 229 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 3/102 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ + + R + LT RE + L G ++ Sbjct: 120 VHSGDAVVAPSTTRRLLDRFAPMLPDASAA---PRHAGLDRLTGREREVMVLVAQGLSNG 176 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L LS TV ++G KL +R+Q + A G + Sbjct: 177 EIAAHLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 218 >gi|284030612|ref|YP_003380543.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809905|gb|ADB31744.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 227 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT+RE L L G T+ EIA +L + TV ++ +KL +R+QA+ Sbjct: 152 RPDLVAELTDREREVLGLIARGLTNTEIAGQLFVGEATVKTHVSRVLLKLGLRDRVQAVV 211 Query: 227 KAIRFGYI 234 A G + Sbjct: 212 FAYECGLV 219 >gi|317492747|ref|ZP_07951172.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919270|gb|EFV40604.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 210 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQV--------- 156 L + I V ++ L +E I Sbjct: 73 LRNEGVDARIIILTVSDSRSDVYALVDAGADGYLLKDSEPEILLSQIHQAASGKNVFSDT 132 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I+++L + + +LTERE LQ G ++++IA +L +S TV ++ + KL Sbjct: 133 ISEYLSSRTELTDPFADLTERELDVLQEVARGLSNKQIASQLHISEETVKVHIRNLLRKL 192 Query: 217 DAVNRIQAIAKAIRF 231 D +R+ A + Sbjct: 193 DVRSRVAATVLYLEN 207 >gi|209523263|ref|ZP_03271819.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209496414|gb|EDZ96713.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 220 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + ++LT RE L+L G GY++ EIA++L +S TV ++ S Sbjct: 135 AARSKASRDEPLPDNLQDLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSS 194 Query: 216 LDAVNRIQAIAKA 228 L+ +R Q A Sbjct: 195 LNLRDRTQVALLA 207 >gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] Length = 212 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN--LTERETS 180 G++ + F + + V+ G + R A L+ RE Sbjct: 98 HGARGFLEKAASFSEITDAVLQIGAGGTIIAPFAQDVLARELRTRQDTAERPVLSPREIE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+LA DGY+ ++IA +L +S+ TV +L KLD +R A+A+AIR G++ Sbjct: 158 ILRLAADGYSGQKIASELHISLATVKTHLQHIYDKLDVSDRASAVAQAIRRGFL 211 >gi|206890511|ref|YP_002248221.1| response regulator UvrY [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742449|gb|ACI21506.1| response regulator UvrY [Thermodesulfovibrio yellowstonii DSM 11347] Length = 213 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE + G + EI+++L +S+ TV+ Y KL N + I A Sbjct: 147 PPHEKLSEREFQVFLMIAKGKSLIEISKELSISIKTVSTYRARILEKLGLENNAEIINYA 206 Query: 229 IRFGYI 234 I+ G I Sbjct: 207 IKHGLI 212 >gi|54022382|ref|YP_116624.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54013890|dbj|BAD55260.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 220 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +A LT+RE + L +G T+ EI +L LS T ++ KL A Sbjct: 141 AAHAKQPPPAALAELTDREREVMALVAEGLTNAEIGARLYLSPATARTHVSRILTKLGAR 200 Query: 220 NRIQAIAKAIRFGYI 234 +R Q + A G + Sbjct: 201 DRTQLVVLAYESGLV 215 >gi|119715261|ref|YP_922226.1| response regulator receiver [Nocardioides sp. JS614] gi|119535922|gb|ABL80539.1| response regulator receiver [Nocardioides sp. JS614] Length = 218 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 155 QVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +VI +F L ++ AA LT RE +L G ++ EI +L +S TV ++ Sbjct: 133 RVIREFTRLRRQPPPAAVATLTGRELEVFRLITQGLSNAEIGRELFISDTTVKTHVTRLF 192 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KLD +R QAI A + G Sbjct: 193 QKLDLRDRAQAIVLAYQTGI 212 >gi|315093205|gb|EFT65181.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 218 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + ++ + + S A LT RE +L G ++ Sbjct: 109 LVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLTAREIEVAKLVARGLSNA 168 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 169 QIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|302554629|ref|ZP_07306971.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472247|gb|EFL35340.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 235 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 155 QVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ E + + LT RET L L DG +++EIA +L +S TV ++ + Sbjct: 148 RLLERLAEGGTRPPAPPEVPDGLTARETEVLVLIADGLSNQEIARRLHVSTATVKTHINN 207 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 K +R QA+ A G + Sbjct: 208 LFTKTGLKDRAQAVRYAYGKGLV 230 >gi|269836898|ref|YP_003319126.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786161|gb|ACZ38304.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 242 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + L+ RE L G +++EIA L ++ TV ++ + KL +R Sbjct: 160 RASAPLAPGLLPLSPREMEVLDCVAQGLSNKEIANTLYITEQTVKNHITAVYKKLHVQDR 219 Query: 222 IQAIAKAIRFGYI 234 +QA+ A+R G++ Sbjct: 220 VQALTCAVRRGWV 232 >gi|328951621|ref|YP_004368956.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451945|gb|AEB12846.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 222 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 46/96 (47%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + EV+++ A + + ++ A LTERE L+L G T++EIA++ Sbjct: 116 RRVHQGEVLLDGELAEQIIQDFRAKREALTTAPAAELTEREVQILRLLAQGATNQEIADE 175 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LGLS TV L KL NR QA AIR G Sbjct: 176 LGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREGL 211 >gi|126740030|ref|ZP_01755720.1| Possible LuxR family protein [Roseobacter sp. SK209-2-6] gi|126718849|gb|EBA15561.1| Possible LuxR family protein [Roseobacter sp. SK209-2-6] Length = 207 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 9/183 (4%) Query: 52 CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 Y + D + S + W+ +QE + Sbjct: 34 YVKSTYSKAWVARYVERLFIQTDPTVQFGLSRTGHVTWKQLQELYPESKT---FFDEAAL 90 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 G +R+ + + + + +A V+ L K R Sbjct: 91 FGLRHGNTLSLRI-DGQISVLSCSGSPWNEQELRMADAALRGLAVL-----LSKPREGRD 144 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L ER L L G +EIAE L + + TV A A + Q I++ I+ Sbjct: 145 FGLPERVKDVLALMVSGARDQEIAEILSIKIETVRARRQLAFQLTNTRTIAQLISEVIKN 204 Query: 232 GYI 234 G I Sbjct: 205 GLI 207 >gi|94970774|ref|YP_592822.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552824|gb|ABF42748.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 211 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 21/151 (13%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC----------- 153 + L + +R F + +I T+ + + A A Sbjct: 59 LMDLRLPGISGTDALISIRGEFPRARVIILTTSDSHTEIDRALRAGAAAYILKSMPMNEM 118 Query: 154 ----YQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 V + ++ +S +LT RE L L DG+ +++IA++L +S Sbjct: 119 LAVIRSVHAGARHIPQEVASRLAENIGEESLTSRELEVLHLIRDGHRNKQIADELSISET 178 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN ++ + K+ A +R A+ A+R G + Sbjct: 179 TVNFHIKNIVGKMGANDRTHAVTIAVRRGLL 209 >gi|90577248|ref|ZP_01233059.1| transcriptional regulator, LuxR family protein [Vibrio angustum S14] gi|90440334|gb|EAS65514.1| transcriptional regulator, LuxR family protein [Vibrio angustum S14] Length = 214 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S L+ RE L+ G +S++IA+ L +S TV + + KL+ + + Sbjct: 146 KSPDINPLSRREERVLKHVAQGLSSKQIAKALEISYRTVETHRQNIKHKLELHSTAELAK 205 Query: 227 KAIRFGYI 234 A+ G I Sbjct: 206 YALEKGLI 213 >gi|37223199|gb|AAQ90194.1| LuxR [Vibrio parahaemolyticus] Length = 208 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 9/195 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 K+ S ++++ L + + + Y + + I + NY + Sbjct: 18 IKRCRSNKDINQCLSDMTKMV---HCEYYLLAIIYPHCMVKSDISIVDNYPKKWRQYYDD 74 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + + NS PI W I E + ++ G +FP+ + Sbjct: 75 ANLIKYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 133 Query: 128 KNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + F + + ++ ++ ++ + + +LT+RE CL Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLQACMNIPLIVPSLVDNYRKINIANNKSNXDLTKREKECL 193 Query: 183 QLAGDGYTSEEIAEK 197 A +G +S +I++ Sbjct: 194 AWACEGKSSWDISKI 208 >gi|330468534|ref|YP_004406277.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811505|gb|AEB45677.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 229 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 1/132 (0%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + + V D L Sbjct: 94 FELDEYVVGGLRAGASGFLSKDVPAEDLITAIRTVAAGDAVVAPRILRRLLDRFADVLPD 153 Query: 164 FKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 A LT+RE L G ++ EIA L +S T+ ++G+ KL +R+ Sbjct: 154 PAASPPKALSTLTDREREVLGQVARGLSNAEIARALSVSETTIKTHVGNVLTKLGLRDRV 213 Query: 223 QAIAKAIRFGYI 234 QA+ A G + Sbjct: 214 QAVVLAYESGLV 225 >gi|289167132|ref|YP_003445399.1| response regulator [Streptococcus mitis B6] gi|288906697|emb|CBJ21531.1| response regulator [Streptococcus mitis B6] Length = 199 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G++++EIA+KL LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KL A NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLHAGNRTEAANIAKESGWL 199 >gi|108762123|ref|YP_628591.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108466003|gb|ABF91188.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 209 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A ++ +++A LT RE L L +G +++ IA++L +S HT ++ + Sbjct: 125 ALAELRATPRASLPAQATAPDALTPREREVLGLLAEGLSNKAIADRLDISEHTAKFHVNA 184 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL R +A+ +A + G + Sbjct: 185 VLAKLGVQRRTEAVVRAAKLGLV 207 >gi|297158992|gb|ADI08704.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGY 189 + + ++ + + ++ A +++ + S+ R LT RE L+L G Sbjct: 114 LVAAVRMVRSGDALL-APAITRRLVERYARRDPDTSALHRDLAALTPREAEVLRLLAQGL 172 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ E+A +L LS TV ++ KL +R+QA+ A G + Sbjct: 173 SNAELAARLHLSEATVKTHVARILAKLGLRDRVQAVVVAYETGLV 217 >gi|302546480|ref|ZP_07298822.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464098|gb|EFL27191.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178 +R G Y E L A + H +V L + R +LT+RE Sbjct: 102 LRAGAAGYVYKDVDPEALASAIRSVHAGHVVLQPEVADALLSQDEAGGGQGRGGSLTDRE 161 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA +L LS TV ++ + +KLD +R QA A+R G Sbjct: 162 REVLGLIADGRSNREIARRLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 216 >gi|240080653|ref|ZP_04725196.1| NarL/NarP [Neisseria gonorrhoeae FA19] gi|240123586|ref|ZP_04736542.1| NarL/NarP [Neisseria gonorrhoeae PID332] gi|268596776|ref|ZP_06130943.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268682215|ref|ZP_06149077.1| two-component system response regulator [Neisseria gonorrhoeae PID332] gi|268550564|gb|EEZ45583.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268622499|gb|EEZ54899.1| two-component system response regulator [Neisseria gonorrhoeae PID332] Length = 218 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA Sbjct: 145 QRTQALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAA 204 Query: 226 AKAIRF 231 AIR Sbjct: 205 VYAIRH 210 >gi|83942258|ref|ZP_00954719.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. EE-36] gi|83846351|gb|EAP84227.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. EE-36] Length = 220 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + +A +LTERE + L G +++E+A L +SV TV + + KL + Sbjct: 144 EPKDAARESLTEREQTILLQLAQGKSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGL 203 Query: 225 IAKAIRFGYI 234 A+ G + Sbjct: 204 TRYAMEHGVL 213 >gi|295695307|ref|YP_003588545.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410909|gb|ADG05401.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 75 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T+ EIAE+L +S TV ++ + KL+ R QA+ + +R G Sbjct: 13 LTAREREVFELLVQDKTTREIAEQLYISEKTVRNHISNVMKKLNVKGRSQAVVELVRMG 71 >gi|260433411|ref|ZP_05787382.1| DNA-binding response regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417239|gb|EEX10498.1| DNA-binding response regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] Length = 214 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K S LT RE + L G +++E+A+ L +SV TV + + KL + Sbjct: 135 SLEPKGDSTREALTGREQTILLELAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISST 194 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 195 AGLTRYALEHGVL 207 >gi|332671033|ref|YP_004454041.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340071|gb|AEE46654.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 237 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 40/96 (41%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + ++ + H A +LTERE L L G ++ EI + L Sbjct: 138 IAPSSTRRLLEHLITALPPDAPGAAADPARRAVADLTEREREVLVLMAKGRSNTEIGQDL 197 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV ++G KL A +R+QA+ A G + Sbjct: 198 FVAEATVKTHVGRILAKLGARDRVQAVVTAYETGLV 233 >gi|307327120|ref|ZP_07606309.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887201|gb|EFN18198.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 236 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 4/127 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + VR + + +LA V + Sbjct: 92 EALHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLVEQYTRATARPRRPD--- 148 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L L G ++ EIA +L +S HTV ++G+ KL +RIQA+ Sbjct: 149 -PRLDMLTARERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVIC 207 Query: 228 AIRFGYI 234 A G I Sbjct: 208 AYETGLI 214 >gi|223939339|ref|ZP_03631218.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891943|gb|EEF58425.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 220 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +LT RE + L L G +++EI KL +S TV ++L S KL+ ++R +AIA A R Sbjct: 154 SESLTSRELAVLSLLALGKSNKEIGVKLYISETTVKSHLRSIFAKLNVISRTEAIATASR 213 Query: 231 FGYI 234 G + Sbjct: 214 RGLV 217 >gi|163800211|ref|ZP_02194112.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159175654|gb|EDP60448.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 222 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 152 ACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q IT + S LT+RE + L G ++++IA++L +S +TV +L Sbjct: 134 FSQQYITHLRRHGRPTSKPLREILTKREQQIITLLSSGASNQQIADQLLVSENTVKTHLH 193 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 + K+D NR+QA+ A Sbjct: 194 NIFKKIDVKNRVQALIWAKEN 214 >gi|328951086|ref|YP_004368421.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451410|gb|AEB12311.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 216 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 46/96 (47%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + EV+++ A + + ++ A LTERE L+L G T++EIA++ Sbjct: 116 RRVHQGEVLLDGELAEQIIQDFRAKREALTTAPAAELTEREVQILRLLAQGATNQEIADE 175 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LGLS TV L KL NR QA AIR G Sbjct: 176 LGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREGL 211 >gi|325003494|ref|ZP_08124606.1| two component system response regulator [Pseudonocardia sp. P1] Length = 222 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 3/122 (2%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 +G + L + S Sbjct: 98 GGASGFLVKDSEPADLIHAIRIVHGGEAL---LAPAVTRTLIAEFAARSRGGPAVSPRLD 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIA +L +S T ++ KL A +R Q + A G Sbjct: 155 ALTEREREVLAEVAAGLSNDEIAGRLHMSPTTAKTHVSRTMTKLGARDRAQLVVVAYESG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|134103684|ref|YP_001109345.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133916307|emb|CAM06420.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 218 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LTERE L L G ++ E+A +L LS T+ ++G KLD +R+QA+ Sbjct: 145 RDPGVLDVLTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRDRVQAV 204 Query: 226 AKAIRFGYI 234 A G + Sbjct: 205 VLAYETGLV 213 >gi|300791059|ref|YP_003771350.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800573|gb|ADJ50948.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 36/68 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + ++ LT+RE L L G ++ EIA+ L LS TV ++G KL+ +R+QA+ Sbjct: 145 RDTAELDVLTDREREVLVLIAKGMSNLEIADALFLSEATVKTHVGRILAKLELRDRVQAV 204 Query: 226 AKAIRFGY 233 A G Sbjct: 205 VLAYETGL 212 >gi|297158565|gb|ADI08277.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 218 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 40/86 (46%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A + E RS LT RE LQL G G ++ EIA +L +S HTV + Sbjct: 130 ARRLVADFVRRPRETAAPRSDRLAVLTARERETLQLLGRGLSNAEIAAELVVSEHTVKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL +RIQA+ A G + Sbjct: 190 VSNVLTKLGLRDRIQAVICAYETGLV 215 >gi|256376358|ref|YP_003100018.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920661|gb|ACU36172.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 302 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + ++ + E ++ + + A +T RE L+L +G Sbjct: 177 PADLLAAIRVVASGEALLSPSVTRRLITEFAARPAARPLPALDAVTAREREVLRLVAEGL 236 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EI E L +S T+ ++G KL A +R Q + A G + Sbjct: 237 SNTEITEALHVSRGTLKTHVGRLLHKLGARDRAQLVIAAYESGLV 281 >gi|167753032|ref|ZP_02425159.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216] gi|167659346|gb|EDS03476.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216] Length = 216 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 C +V+ + S + L+ RE L G +++EIA++L +S TV+ Sbjct: 126 YFCEEVLRSLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISKRTVD 185 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K N + A+R G + Sbjct: 186 KHRANILEKTGCKNTASLVVYAVRHGLV 213 >gi|119025623|ref|YP_909468.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765207|dbj|BAF39386.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 249 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 184 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 243 Query: 229 IRFGYI 234 + Sbjct: 244 YENHLV 249 >gi|254819243|ref|ZP_05224244.1| response regulator receiver domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length = 211 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFK--KRSSAARNLTE 176 GY++ ++ LA V A G V+ ++ + + A +LTE Sbjct: 91 AGATGYLVKSASKSELAQAVTATAAGRAVFTPGLAGLVLGEYRRIAQSKDDGPARPSLTE 150 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G ++++IA KL LS TV ++ + KL NR++ AI G Sbjct: 151 RETEVLRYVAKGLSAKQIAMKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 207 >gi|170703248|ref|ZP_02894049.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170131845|gb|EDT00372.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 243 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 21/230 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNILIETY 72 + L +A FA + + EL Sbjct: 12 AADWQRALRACVAAFEA--FASPSAIVFYRLDLNGEPADFELFGMPESMHRTYLA-RYRT 68 Query: 73 GDDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVR----------LEGGLLPFAG 117 D +G+ ++ + +E S+ + R L G Sbjct: 69 LDPLHPSRCAAGVRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDDAGRTVG 128 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLT 175 +R G F + + + L + R LT Sbjct: 129 AFSLLRFGKGDADGNSTAGRFAPGEVDALARLQPVAEAALAPLLRARRGIHRIGCEERLT 188 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE +L DG +++EIA L L T+ +L KL NR + + Sbjct: 189 YREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 238 >gi|163801312|ref|ZP_02195211.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159174801|gb|EDP59601.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 217 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L+ +V+ + EL + LT RET L G ++ +IA+ L + Sbjct: 128 LSRDVLNRLVAYLANLNHTVTELDTQL---EIELTRRETQVLTALCQGGSNLDIADSLFV 184 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 S HTV ++L S KL+ NR+QAIA A R Sbjct: 185 SEHTVKSHLYSIFRKLEVKNRMQAIAWAKRN 215 >gi|298249917|ref|ZP_06973721.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547921|gb|EFH81788.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 41/83 (49%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ + + + L++RE L+L DG ++ EIA+KL +S TV ++ Sbjct: 131 RVAARVVEELRGNRRDAPNPFTQLSDRELDVLRLIADGCSNSEIAQKLIISEKTVKGHVS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL V+R QA A + G Sbjct: 191 NILGKLHMVDRTQAAVFAWQQGL 213 >gi|260662950|ref|ZP_05863843.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|260552571|gb|EEX25571.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 217 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE L GYT++EIA KL +S TV A+ + KL R + AI Sbjct: 154 SLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRADLVRYAIHHH 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|269793700|ref|YP_003313155.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095885|gb|ACZ20321.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 226 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 3/103 (2%) Query: 135 TSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + ++ V + + + R+LT RET L+ +G ++ Sbjct: 120 SGSSVVAPRVVRRMLDLFAPHLPGGDDASPARPDEVAPVLRDLTPRETDVLRAVAEGLSN 179 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIAE+L LS TV ++G+ KL +R+QA+ A G + Sbjct: 180 AEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAVILAYESGLV 222 >gi|239926633|ref|ZP_04683586.1| two-component system, regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291434947|ref|ZP_06574337.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291337842|gb|EFE64798.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 257 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 22/215 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L + ++ + +L + P R++ +Y D+ + D Sbjct: 34 VLAALSEVMEYDHASLARWD-----PLRRRHTTLAGSYPDDATAYIETR--LHHDPVFPV 86 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK-NGYVIFTSEF 138 S +W ++ +S + L G+A + + G + ++ Sbjct: 87 LRSPARGGLWLRDVPGQLLAASPGF-QEVLCPLGIEDGVAQCLFAADGRYVGMLNVSTRR 145 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSS----AARN---------LTERETSCLQLA 185 + + + ++ AA L+ RE L Sbjct: 146 PRRTPDPARAVLTLLTEALAAAVDTRAGPPPEEVAAADPTADARRPGGLSPRELQVLAEL 205 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 G T+ EIAE+L ++ TV ++ KLD N Sbjct: 206 TAGRTNREIAERLYITPRTVGTHVEHILAKLDLPN 240 >gi|238909924|ref|ZP_04653761.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 248 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 91 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ ++ LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|297566899|ref|YP_003685871.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851348|gb|ADH64363.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 217 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + EV+++A Q+I DF + L+ERE L+L GYT+ EIA + Sbjct: 116 RRVNNGEVLLDAE-LAEQIIQDFKAKRESVPKPHAELSEREVQILKLVAQGYTNLEIAGE 174 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L LS TV L KL NR QA A+R G Sbjct: 175 LSLSEKTVRNRLSEIFQKLHLNNRTQAALYALREGL 210 >gi|15805916|ref|NP_294615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458612|gb|AAF10469.1|AE001942_1 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 194 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q+ R LT RE+ L L G++++EIA LG+S TV +L Sbjct: 109 LARQLREIVAHPEVDRLPQVDVPRLTPRESEVLPLLARGFSNKEIARDLGVSPDTVKDHL 168 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL+A +R +A+++A G + Sbjct: 169 ARLYSKLNAGDRTEAVSRARSIGLL 193 >gi|240171004|ref|ZP_04749663.1| two-component transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 218 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFK--KRSSAARNLTE 176 GY++ ++ L++ V A G V+ ++ + A +LTE Sbjct: 100 AGATGYLVKSASKAELSDAVRATAAGRAVFTPSLAGLVLGEYRRIATSTDSGPARPSLTE 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 160 RETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216 >gi|159029157|emb|CAO87517.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 93 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 40/66 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +L++RE L L +G T++EI+EKL +S TV+ ++ + K NR++ + A+ Sbjct: 8 TAASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWAL 67 Query: 230 RFGYIC 235 +G +C Sbjct: 68 HWGKVC 73 >gi|157960462|ref|YP_001500496.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845462|gb|ABV85961.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 224 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 18/154 (11%) Query: 86 PIIWQSIQEETVIE----SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 P++ + + + LS G+ F ++ ++ T ML Sbjct: 64 PLVASQLVKHVPVALYQVEREGLSAEAALLQGIR-GLLF-----NNERMDLLLTGLRKML 117 Query: 142 ANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + +V+ + L + S + LT RE + +QL G ++EI Sbjct: 118 S-DELWFDRPLMSKVLRQLVNKMGISESLTSEASESLEGLTNREKTIIQLVSSGARNKEI 176 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A+KL +S HTV A++ S K A NR++ + A Sbjct: 177 ADKLCISEHTVKAHISSIFRKTQARNRVELLRWA 210 >gi|323498997|ref|ZP_08103979.1| response regulator [Vibrio sinaloensis DSM 21326] gi|323315933|gb|EGA68962.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 210 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 11/138 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156 L A + V ++ + +++ + Sbjct: 68 LNALRADDCDAAIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVDLLKLSLRGNKAY 127 Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + +L + S LT+RE L+ G +++IA+ L +S TV ++ S Sbjct: 128 SQEVAKYLADRENSSDVFDELTDREMQILREVAKGDRNKQIADTLFISESTVKVHMKSLL 187 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL +R A + Sbjct: 188 KKLQVPSRTAATVLYLER 205 >gi|300784675|ref|YP_003764966.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794189|gb|ADJ44564.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS------AARNLTERET 179 +G+++ + +A+ V A G L R++ AA+ LT RE Sbjct: 97 AGASGFLLKRARKEEIAHAVRTVAAGESLLFPEAIRRLVIGRAAGGKHTRAAKTLTRREA 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++++IA L +S+ TV ++G KL A NR QA+ A G + Sbjct: 157 EVLRLIATGLSNQDIAAALVVSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGVV 211 >gi|282861209|ref|ZP_06270274.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563867|gb|EFB69404.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181 GY++ + L V A G + + L+ RE Sbjct: 105 AGATGYLLKDAPREELFTAVRAAADGRTVLSPAVASRLITRVRTPAAPGGEALSTREREV 164 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA L +S TV +L KL A +R A+A G + Sbjct: 165 LALVAKGTSNREIAAVLFISEATVKTHLTHVFAKLGAKDRAAAVALGYERGIL 217 >gi|284032594|ref|YP_003382525.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811887|gb|ADB33726.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 212 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + A G ++ ++ L LTERET L+L G T+++IA++ Sbjct: 115 RRTAEGDAVFSA-GLAGLLLGEYRRL--GAGPEVPQLTERETEVLRLVARGLTAKQIAQR 171 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L LS TV ++ + KL NR + + AI G Sbjct: 172 LVLSHRTVENHVQNTLRKLQLHNRAELVRYAIENGI 207 >gi|85708110|ref|ZP_01039176.1| two-component response regulator [Erythrobacter sp. NAP1] gi|85689644|gb|EAQ29647.1| two-component response regulator [Erythrobacter sp. NAP1] Length = 217 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 63/221 (28%), Gaps = 23/221 (10%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + ++ + + + S + +D I Sbjct: 9 VDDHQLAREGLRAVLAGDGMEVVGLASTGEEAVELAGSLVPDVILMDVRLGDGIDGLEAT 68 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + LPI + + + G + Sbjct: 69 RQVVALG----LPIKVVMLTLHEMPGYVREALAAGAAGYVLKD----------------T 108 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYT 190 + N+V+ +++ + + LT RE ++L +G T Sbjct: 109 EIGDLRAAINQVMAGQSALPLDLVSAAMRAENRPEPKGDLSQILTSREQEVVELVAEGLT 168 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++EIA KL +S TV ++ KL +R QA A++ Sbjct: 169 NKEIARKLDISPATVKVHVERLIGKLGVADRTQAAVMAVKL 209 >gi|269962780|ref|ZP_06177121.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832470|gb|EEZ86588.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 222 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE + G ++++IAE+L +S +TV +L + K+D NR+QA+ A Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKENIS 216 Query: 232 GY 233 G Sbjct: 217 GL 218 >gi|325291913|ref|YP_004277777.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059766|gb|ADY63457.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 251 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 18/220 (8%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL--IETYGD 74 +S L L+ A ++ L + ++ D Sbjct: 48 VSGALDLLVTYAGASHYLLAREDL---LEETGLKFIITSDWPFDLVRRLGAELANSQNRS 104 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + S L P + + + G ++ ++F V G + ++ Sbjct: 105 SEMEKCLSLLQP------RLLVLPDDVSVPF----GIDRQYSALSFCV--GRIRLSLLLL 152 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E + + + + E ++ + K LTERE CL +G TS+EI Sbjct: 153 FPEHSVPSPDRLREIALLTGYCVSFGIASEAKAVRDID-LTERELECLFWIAEGKTSDEI 211 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 212 AMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 251 >gi|322388622|ref|ZP_08062222.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321140542|gb|EFX36047.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 199 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L G +++EIA+KL LS TV Y+ + KL A NR Sbjct: 127 ELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLGASNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAAKTAEEEGWL 199 >gi|224283310|ref|ZP_03646632.1| two component transcriptional regulator, LuxR family protein [Bifidobacterium bifidum NCIMB 41171] Length = 240 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L G +++EIA+KL +S+ T ++ K++A +R+QA+ A Sbjct: 175 PELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFA 234 Query: 229 IRFGYI 234 G + Sbjct: 235 YDNGLV 240 >gi|91223298|ref|ZP_01258564.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|91192111|gb|EAS78374.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] Length = 222 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + G ++++IAE+L +S +TV +L + K+D NR+QA+ A Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214 >gi|324998048|ref|ZP_08119160.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 198 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 5/159 (3%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + + + + + + + + RL I F I Sbjct: 42 RYARQS---VDVVLVGTQRAVPTGVEATRRLVAAHPQANVIVFGAPDDAGSIAAAIAGGA 98 Query: 138 FLMLANEV-IIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIA 195 L + E A + + + LTERE L+ G ++ +I Sbjct: 99 RGYLRWDASRPELVAALAHTLASTSVPTPRVPTDPGVQLTERELQVLRGMSQGKSNGQIG 158 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV + KL +R QA+A R G + Sbjct: 159 RELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|322437503|ref|YP_004219593.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165396|gb|ADW71099.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196 + E ++ A + ++ + + R + A +LT RE+ L G +++EIA+ Sbjct: 107 DASGEELLNAIQSVHRGLRYLPHVALDRLAERTPAVDLTPRESEVLVCITQGRSNQEIAD 166 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LG++ TV ++ S K+ A +R QA A++ G + Sbjct: 167 ELGIAEKTVRIHVSSLLDKMGARDRTQATIYALQRGLV 204 >gi|298243906|ref|ZP_06967713.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556960|gb|EFH90824.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 266 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 ++ +F L SS LTE+E ++ G +++EIAE+L S TV YL Sbjct: 171 AIVGEFRRLADTTSSNQGTDLLTEKELEIIRYVAAGLSNKEIAERLSYSEKTVKNYLSII 230 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R Q A+R G + Sbjct: 231 FQKLHLRDRTQVAIFALRQGLL 252 >gi|255263647|ref|ZP_05342989.1| positive regulator AgmR [Thalassiobium sp. R2A62] gi|255105982|gb|EET48656.1| positive regulator AgmR [Thalassiobium sp. R2A62] Length = 204 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+NLT+RE L+ G +++EIA L + TV ++ + KL+A NR QA A Sbjct: 141 AKNLTQRELQVLEGLTQGKSNKEIARDLEIQEPTVKLHMKTLYRKLEASNRTQAALIARE 200 Query: 231 FGY 233 G Sbjct: 201 AGL 203 >gi|297156827|gb|ADI06539.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+RE ++L G T++EIA +L LS T ++ KLD +R Q + A Sbjct: 150 PRLRALTDREREVMRLVAAGLTNDEIAARLVLSPATAKTHVSRIMTKLDVRDRSQLVVLA 209 Query: 229 IRFGYI 234 G + Sbjct: 210 YESGMV 215 >gi|260577153|ref|ZP_05845130.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] gi|259020627|gb|EEW23946.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] Length = 203 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 14/179 (7%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 YD D D + S I W Sbjct: 39 TYDQAWVDHYTENGFVLRDPMIAWGFSTTGSIRWSDEGLLDPF-----HLFDEARKFGLC 93 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 G+ + F + + ++ I +++ + LT Sbjct: 94 YGVTV-ACGPINSRTIGSFARKDREVRDDEIAALSLIVHRLHDM--------TQPPEELT 144 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + L+ G AEKLG+S + A + SA ++L A +AI +A + I Sbjct: 145 KAQIEALRCIAGGDRHAAAAEKLGISESALKARISSARIRLMARTTAEAIQRAKDYRLI 203 >gi|313901723|ref|ZP_07835152.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468011|gb|EFR63496.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 222 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AR L++RE L G T+ ++A +L +S TV +L KL +R QA+ A+ Sbjct: 151 RARLLSQRELEVLSRIARGKTTAQVARELFISPKTVRNHLSHIMQKLGVRDRTQAVLFAL 210 Query: 230 RFGYI 234 R G I Sbjct: 211 RVGLI 215 >gi|298247654|ref|ZP_06971459.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550313|gb|EFH84179.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 907 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + ++ L+ERE LQ G +++ IA+ L +S++TV ++ Sbjct: 820 RAFSEAASRTSHTQPLLDPLSERELEVLQCIMRGQSNQTIADHLQVSLNTVKTHMSHIFA 879 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R QA+A+A I Sbjct: 880 KLHVNSRTQAVARANELQLI 899 >gi|222081230|ref|YP_002540593.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725909|gb|ACM28998.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 897 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 + + + + + +L ++A LT+RE Sbjct: 782 IEGPEFGRRLCQLAASRGVPDVVMQRLERLQDVVAGASAQDSDLLSVPTAATGGLTDRER 841 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S L+L G +++EI KL LS +TV +L + KL+ R A+ A G + Sbjct: 842 SVLRLLSAGLSNKEIGRKLDLSNNTVKFHLRNIYAKLNVTTRTAAVTMARDTGIL 896 >gi|119468997|ref|ZP_01612022.1| putative regulator in two-component regulatory system ; LuxR family protein [Alteromonadales bacterium TW-7] gi|119447649|gb|EAW28916.1| putative regulator in two-component regulatory system ; LuxR family protein [Alteromonadales bacterium TW-7] Length = 217 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ ++ +LT ++ LQ +G +++IA +L +S TV A++ + KL NR Q Sbjct: 141 DREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQ 200 Query: 224 AIAKAIRFGY 233 A+ A + Sbjct: 201 AVLIAAKLQL 210 >gi|186685344|ref|YP_001868540.1| LuxR family GAF modulated transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467796|gb|ACC83597.1| GAF modulated transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 221 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 11/160 (6%) Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + + P+ + E + +L AG P+ H G Sbjct: 63 QHNPVARYLLEHHAPVHEGLVVE----PKTWRLICPRADHWHVMAG---PIVSNGHLVGV 115 Query: 132 VIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGD 187 V FT + M + +I+ C + T + + LT RE QL Sbjct: 116 VGFTRQQGMPTFDSQNLIDLSALCLHISTWVARVKSQHPLLLQTERLTPREMQIAQLVAQ 175 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G T+ EI+ +L ++ ++V L KL+ +R Q +AK Sbjct: 176 GQTNAEISAELWITENSVKQALKRMFRKLEVSSRTQMVAK 215 >gi|205357190|ref|ZP_02345732.2| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323376|gb|EDZ11215.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 248 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 91 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ ++ LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|57234510|ref|YP_181438.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57234583|ref|YP_181405.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224958|gb|AAW40015.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] gi|57225031|gb|AAW40088.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 224 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LT+RE L++A G ++++IA++L LS T+ +L + KL +R +AI Sbjct: 153 SAVNPLTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYG 212 Query: 229 IRFGY 233 ++ G+ Sbjct: 213 LKRGW 217 >gi|332199316|gb|EGJ13394.1| response regulator [Streptococcus pneumoniae GA41317] Length = 199 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|328885551|emb|CCA58790.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 249 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERET L L DG +++EIA +L +S TV ++ + K +R QA+ A + Sbjct: 179 DGLTERETEVLVLVADGLSNQEIAGRLRISTATVKTHINNLFAKTGVRDRAQAVRYAYQH 238 Query: 232 GYI 234 G + Sbjct: 239 GLV 241 >gi|320158186|ref|YP_004190564.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] gi|319933498|gb|ADV88361.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] Length = 214 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQ G ++ EIA+ L +S HT+ ++L + K+D NR QA A A R Sbjct: 155 ELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKRN 213 >gi|261405324|ref|YP_003241565.1| LuxR family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|315645684|ref|ZP_07898808.1| transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|261281787|gb|ACX63758.1| transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|315279162|gb|EFU42472.1| transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 74 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T+ +IA +L +S TV ++ + KL+ R QA+ + I+ G Sbjct: 12 LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLG 70 >gi|256394854|ref|YP_003116418.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361080|gb|ACU74577.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 232 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 39/96 (40%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + ++I T +R LT+RE L G ++ EIAE L Sbjct: 127 PRITRQLIEAFARQTDPAATAAGPRADERLERLERLTDREREVLVEIARGQSNAEIAETL 186 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV ++ KL+ +R+QA+ A G + Sbjct: 187 HLSEATVKTHVSRILPKLELRDRVQAVVFAYEIGLV 222 >gi|301059373|ref|ZP_07200300.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] gi|300446602|gb|EFK10440.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] Length = 220 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L + + + L++RE L G +++ IA L +S TV + KL Sbjct: 141 HMETLTQSCRETEISEILSQREMEVFLLLAKGESTKAIARALFISPKTVETHRYHIMQKL 200 Query: 217 DAVNRIQAIAKAIRFGYI 234 +A + + AIR G I Sbjct: 201 EADSVVALTRLAIRNGLI 218 >gi|227505685|ref|ZP_03935734.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197653|gb|EEI77701.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 212 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%) Query: 140 MLANEVIIEAHGACY--QVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 +E++ H A ++ + L + + +LT RE L+L G ++ EI Sbjct: 114 APPHELLAAVHSAADGDSALSPIVADRLMTRVRTPRTSLTPRELEVLKLVAAGASNREIG 173 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L LS TV ++L KL +R A+A A G + Sbjct: 174 QDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212 >gi|72383356|ref|YP_292711.1| LuxR transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003206|gb|AAZ59008.1| regulatory protein, LuxR [Prochlorococcus marinus str. NATL2A] Length = 91 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +S+ L+ RE + L DG T++EIAEKL +S TV+ ++ + K + NR+ Sbjct: 5 EIANSSHMGLSAREMEIIGLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVAL 64 Query: 225 IAKAIRFGYIC 235 + A+ G IC Sbjct: 65 LNWAMDHGKIC 75 >gi|269959807|ref|ZP_06174185.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3] gi|269835420|gb|EEZ89501.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3] Length = 204 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156 L + V ++ + + ++E + Q Sbjct: 65 LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHEGDKAYSQA 124 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L + + LT+RET LQ G+ +++IA++L +S TV ++ S KL Sbjct: 125 VAKYLNEREGQEDVFDTLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 184 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 185 KVPSRTAATVLYLER 199 >gi|239978741|ref|ZP_04701265.1| two-component system response regulator [Streptomyces albus J1074] gi|291450632|ref|ZP_06590022.1| two-component system response regulator [Streptomyces albus J1074] gi|291353581|gb|EFE80483.1| two-component system response regulator [Streptomyces albus J1074] Length = 222 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 3/115 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178 +R G Y E L A + H +V L + R +LTERE Sbjct: 106 LRAGAGGYVYKDVDPEALARAIRSVHAGHVLLQPEVAGALLSQDEHGQGQGRGGSLTERE 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 166 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 220 >gi|59801167|ref|YP_207879.1| NarL/NarP [Neisseria gonorrhoeae FA 1090] gi|194098688|ref|YP_002001750.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|239998996|ref|ZP_04718920.1| NarL/NarP [Neisseria gonorrhoeae 35/02] gi|240112982|ref|ZP_04727472.1| NarL/NarP [Neisseria gonorrhoeae MS11] gi|240125768|ref|ZP_04738654.1| NarL/NarP [Neisseria gonorrhoeae SK-92-679] gi|240128290|ref|ZP_04740951.1| NarL/NarP [Neisseria gonorrhoeae SK-93-1035] gi|254493787|ref|ZP_05106958.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|260440452|ref|ZP_05794268.1| NarL/NarP [Neisseria gonorrhoeae DGI2] gi|268594844|ref|ZP_06129011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268599062|ref|ZP_06133229.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268684366|ref|ZP_06151228.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268686687|ref|ZP_06153549.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043751|ref|ZP_06569467.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399036|ref|ZP_06643201.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|59718062|gb|AAW89467.1| putative nitrite/nitrate two-component system transcriptional response regulator [Neisseria gonorrhoeae FA 1090] gi|193933978|gb|ACF29802.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|226512827|gb|EEH62172.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|268548233|gb|EEZ43651.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583193|gb|EEZ47869.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268624650|gb|EEZ57050.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268626971|gb|EEZ59371.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291012214|gb|EFE04203.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610450|gb|EFF39560.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|317164288|gb|ADV07829.1| NarL/NarP [Neisseria gonorrhoeae TCDC-NG08107] Length = 218 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA Sbjct: 145 QRTQALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAA 204 Query: 226 AKAIRF 231 AIR Sbjct: 205 VYAIRH 210 >gi|89094462|ref|ZP_01167402.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89081354|gb|EAR60586.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 221 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + E +K ++A LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 137 LGEVSEDDQKFAAALAALTPQQFRVLTMLTEGLLNKQIAYELNVSEATIKAHVTAILRKL 196 Query: 217 DAVNRIQAIAKAIRFG 232 +R QA+ A R G Sbjct: 197 GVHSRTQAVIAAQRLG 212 >gi|306841639|ref|ZP_07474330.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306288280|gb|EFM59656.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] Length = 234 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAA 171 A L GYV+ + L + + ++I + K + Sbjct: 111 AILASLRAGATGYVLKERDDLEVMLALRSVLRGGAPIDPFVARRIIEELPLQSAKEKADN 170 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L+L +G + +IAE+L LS HT+ A++ + KL +R QA A + Sbjct: 171 AGLSPRENEILRLVSEGLGNRDIAEQLFLSRHTIEAHIKNIYRKLAVSSRTQAAQAARQR 230 Query: 232 GYI 234 G + Sbjct: 231 GLL 233 >gi|302540643|ref|ZP_07292985.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458261|gb|EFL21354.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 227 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGD 187 + + + A + ++ + A LTERE + LA Sbjct: 113 FLLSGIRTVAAGDSLLSPTATRTLITRFLATPDTDTPLAPPERLAALTEREREVMALAAH 172 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA++L +S TV +++ A KLD +R Q + A + G + Sbjct: 173 GKSNAEIADQLVVSPLTVRSHIQRAMTKLDVRDRAQLVVIAYQSGLV 219 >gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 212 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT ET +Q G ++ EIAE LG+S TV +++ + K NR + AI G Sbjct: 147 ELTPTETKVIQYVARGLSNREIAEVLGVSQRTVESHVSNMLGKTGLHNRTELARWAIESG 206 Query: 233 Y 233 Sbjct: 207 L 207 >gi|91776279|ref|YP_546035.1| LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710266|gb|ABE50194.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 257 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 13/118 (11%) Query: 123 RLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------- 173 G H YV+ +S F + ++ + L +++ + + Sbjct: 137 HRGRHDCLYVLLSSNLSFPPASRPMLEALLPYIDSALRQIEHLPEQQPTLIKAEPEPKDE 196 Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE + G T++EI L +S TV +L KL+ +NR QA+AK Sbjct: 197 SLNILSGRELEIMDWVTKGKTNQEIGMILDISAFTVKNHLQRIFKKLNVMNRAQAVAK 254 >gi|311899082|dbj|BAJ31490.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 215 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 3/113 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERE 178 +R G Y E L A + H + L + LTERE Sbjct: 100 LRAGAAGYVYKDVDPEALAGAIRSVHAGHVLLQPELAAALLAEDVPAPPQGRGGNLTERE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L DG ++ EIA L LS TV ++ + +KLD +R QA A+R Sbjct: 160 REVLSHIADGRSNREIARTLHLSEKTVKTHVSNILMKLDVADRTQAALWAVRN 212 >gi|257792552|ref|YP_003183158.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325832688|ref|ZP_08165451.1| prevent-host-death family protein [Eggerthella sp. HGA1] gi|257476449|gb|ACV56769.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325485827|gb|EGC88288.1| prevent-host-death family protein [Eggerthella sp. HGA1] Length = 228 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 41/100 (41%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + L ++ R LT+RE L L G+T++EI Sbjct: 124 AQGDALIEPSITRRLIETFVAARPASLGGAAAVAAGLRTLTDREREILALVARGFTNDEI 183 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV +L KLDA +R Q + +A G + Sbjct: 184 GSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGGLV 223 >gi|254464109|ref|ZP_05077520.1| two component response regulator [Rhodobacterales bacterium Y4I] gi|206685017|gb|EDZ45499.1| two component response regulator [Rhodobacterales bacterium Y4I] Length = 214 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K + A LT RE + L G +++E+A+ L +SV TV + + KL + Sbjct: 135 SLKPKDNGAREALTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISST 194 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 195 AGLTRYALEHGVL 207 >gi|111023025|ref|YP_705997.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822555|gb|ABG97839.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 228 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +++ LTERE LQL G ++ +I E+L +S TV ++ + KLD R +A+ Sbjct: 160 GQTTPRDGLTERELEVLQLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAV 219 Query: 226 AKAIRFGYI 234 +A + G I Sbjct: 220 YEAGKLGLI 228 >gi|330721944|gb|EGG99887.1| Nitrate/nitrite response regulator protein [gamma proteobacterium IMCC2047] Length = 217 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 16/141 (11%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------- 154 L + + F V + E ++E Sbjct: 73 ELRARGITAVVVIFTVSNHEKDILAAMKAGADGYLLKDCEPEDLMEKLRLAATGKSVLDD 132 Query: 155 ---QVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q++T L K +++NL T RE L L +++ IA +LG++ TV ++ Sbjct: 133 ELVQIVTHALRENKPTPPSSKNLLTARERDILDLLAACKSNKVIANELGITDGTVKVHVK 192 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 + KL+ +RI+A A+ Sbjct: 193 NLLRKLNLKSRIEAAVWALEN 213 >gi|269796274|ref|YP_003315729.1| two component transcriptional regulator, LuxR family [Sanguibacter keddieii DSM 10542] gi|269098459|gb|ACZ22895.1| two component transcriptional regulator, LuxR family [Sanguibacter keddieii DSM 10542] Length = 234 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + A G + L + S A LT RE L+ Sbjct: 123 AGATGYLLKDTPRAELVAGIREAARGQTVLTPSVATRLVSQVGSRADRLTPREVEVLRAV 182 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ + +L +S TV +L A KL +R A+ A G + Sbjct: 183 ARGLSNAAVGHELFISETTVKTHLIRAFGKLGVNDRTHAVTVATDRGLL 231 >gi|254425219|ref|ZP_05038937.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] gi|196192708|gb|EDX87672.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] Length = 220 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L DG +++ IA+ L +S +TV ++ + KLD +R +A++ I+ Sbjct: 156 DPLTTREVQVLNQLADGLSNKAIAQVLTISENTVKFHISAILAKLDVSSRTEAVSVGIKA 215 Query: 232 GYI 234 G + Sbjct: 216 GLV 218 >gi|120554504|ref|YP_958855.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] gi|120324353|gb|ABM18668.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] Length = 916 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 41/82 (50%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Y I + ++ A L++RE L L G ++EIAE++ ++ TV A++ + Sbjct: 829 AYHPIDTARPGGEPVNALAEPLSQREQEVLALIHQGLANKEIAERMSVAPATVKAHIRNL 888 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL R +A+AKA G + Sbjct: 889 YGKLGVSRRTEALAKAREVGLL 910 >gi|254476925|ref|ZP_05090311.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214031168|gb|EEB72003.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 203 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 42/110 (38%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T + N V A G Y I + L+ RE L+ Sbjct: 93 LDAGAAGFVPKTLPAKSMINAVRFMAMGEQYAPIDFMTAVEDTPCPLTSTLSPREIEMLR 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++EIA L ++ TV ++ S K+ NR QA A G Sbjct: 153 GLSEGKANKEIARDLNIAEPTVKLHMKSLYRKMKVSNRTQAALVARDKGL 202 >gi|196229817|ref|ZP_03128681.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226143|gb|EDY20649.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L ++ R L+ERE LQ G +++EIA L ++ TV ++G+ KL Sbjct: 135 AARLAERTH--HRELSEREIEVLQRIVKGLSNKEIAGHLFITEATVKLHVGNILTKLGVQ 192 Query: 220 NRIQAIAKAIRFGYI 234 +R QA AI+ G + Sbjct: 193 DRTQASTVAIQRGIV 207 >gi|121606516|ref|YP_983845.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595485|gb|ABM38924.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 292 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G++S EI +L +S T N ++ + KL+ NR QA++ A G Sbjct: 231 KLSEREQQVLKLVASGHSSTEIGARLVISWQTANTHIKNIYRKLNVRNRAQAVSFAANHG 290 Query: 233 Y 233 Sbjct: 291 L 291 >gi|309790624|ref|ZP_07685178.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308227352|gb|EFO81026.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 226 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 43/94 (45%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + +++ Q + S A LTERE S LQ+ G +++EI+ Sbjct: 130 NPEITAQILPYLGRLAEQTAPAPVTTAPPHSERAELLTERERSILQMLAKGCSNQEISAA 189 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L +SV TV ++ S KLD +R QA AI+ Sbjct: 190 LMISVGTVKNHISSILGKLDVRDRTQAALWAIQN 223 >gi|330947744|gb|EGH48203.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] Length = 120 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 5/119 (4%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAA---RNLT 175 P G + E +E ++ ++ A L+ Sbjct: 1 PAASGGALIPFKALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDCLS 60 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G + Sbjct: 61 VRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGLL 119 >gi|307128200|ref|YP_003880231.1| response regulator [Streptococcus pneumoniae 670-6B] gi|306485262|gb|ADM92131.1| response regulator [Streptococcus pneumoniae 670-6B] Length = 199 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|255523270|ref|ZP_05390241.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] gi|296186229|ref|ZP_06854634.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|255513138|gb|EET89407.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] gi|296049497|gb|EFG88926.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] Length = 882 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +++RE L L G + EIA+ L ++ T +++ + KL NRIQA+AKA Sbjct: 819 SEIISKREKEVLMLIESGAKNSEIAKALFITESTTKSHILNIFSKLGVRNRIQAVAKAKE 878 Query: 231 FGYI 234 G I Sbjct: 879 IGII 882 >gi|166368199|ref|YP_001660472.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090572|dbj|BAG05280.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 93 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 40/66 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +L++RE L L +G T++EI+EKL +S TV+ ++ + K NR++ + A+ Sbjct: 8 TAASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWAL 67 Query: 230 RFGYIC 235 +G +C Sbjct: 68 HWGKVC 73 >gi|186681582|ref|YP_001864778.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464034|gb|ACC79835.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 226 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++EEIA+ L ++V TV A+L S KL +R QAI A++ G Sbjct: 164 LTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIFEKLKVTSRTQAIVAALKLGL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|323497110|ref|ZP_08102130.1| two component LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323317685|gb|EGA70676.1| two component LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 209 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 C Q LE + ++ L++RE+ L+ +G ++EIA+ L +SV TV + Sbjct: 124 YLCPQASDRLLEQINEEPEQKDDTLSKRESDVLKAIANGACNKEIADSLHISVRTVETHR 183 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL A + + A++ G + Sbjct: 184 LRIKKKLGATSTAALVKLALQKGLV 208 >gi|317490641|ref|ZP_07949111.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831510|ref|ZP_08164764.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] gi|316910265|gb|EFV31904.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486764|gb|EGC89212.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] Length = 214 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 5/122 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAAR 172 + + +R G TSE L+ A + E + +T L ++ + + Sbjct: 91 LFYTLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGGEEEDRSYQ 150 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQL G+T++EI+E++ LSV TV A+ KL R + A+R Sbjct: 151 QLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHK 210 Query: 233 YI 234 + Sbjct: 211 LL 212 >gi|312883206|ref|ZP_07742935.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369129|gb|EFP96652.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 217 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 36/69 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + + A +LT RE L+ G ++ +IAE + +S TV ++L KL NR+ Sbjct: 144 VETQTAPATVDLTAREIQILRCLMIGASNTQIAEDMFISEFTVKSHLQKIFKKLSVRNRV 203 Query: 223 QAIAKAIRF 231 QA A A + Sbjct: 204 QAAAWAKQH 212 >gi|307330717|ref|ZP_07609854.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883609|gb|EFN14658.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 214 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 5/101 (4%) Query: 138 FLMLANEVIIEAH----GACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSE 192 I H +V L + +LTERE L L DG ++ Sbjct: 112 DPEALARAIRSVHSGHVLLQPEVALALLSQDEGGGQGRGGSLTEREREVLALIADGRSNR 171 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 172 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 212 >gi|184155547|ref|YP_001843887.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|183226891|dbj|BAG27407.1| two-component response regulator [Lactobacillus fermentum IFO 3956] Length = 217 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE L GYT++EIA KL +S TV A+ + KL R + AI Sbjct: 154 SLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRADLVRYAIHHH 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|124024371|ref|YP_001018678.1| LuxR transcriptional regulator [Prochlorococcus marinus str. MIT 9303] gi|123964657|gb|ABM79413.1| Bacterial regulatory protein, LuxR family protein [Prochlorococcus marinus str. MIT 9303] Length = 92 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE + L DG T++EIAEKL +S TV+ ++ + K + NR+ + A+ G Sbjct: 13 SLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 72 Query: 233 YIC 235 IC Sbjct: 73 KIC 75 >gi|33864279|ref|NP_895839.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9313] gi|33641059|emb|CAE22188.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9313] Length = 92 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE + L DG T++EIAEKL +S TV+ ++ + K + NR+ + A+ G Sbjct: 13 SLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 72 Query: 233 YIC 235 IC Sbjct: 73 KIC 75 >gi|17232470|ref|NP_489018.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|17134116|dbj|BAB76677.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 224 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 69/224 (30%), Gaps = 29/224 (12%) Query: 11 SSSLQELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + QEL P L I +++ +Y I+S Q I + + Sbjct: 15 IRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSI------PAVCLESNPVGR 68 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 H L P W+ + P+ Sbjct: 69 YVVERHAPAHEQLILTPEDWKD--------------FCPRHDHG--HVMTGPIICDGRLI 112 Query: 130 GYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F + A + + C + L +SS+ LT RE + Sbjct: 113 GTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSPSPLTPRELQIAE 172 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L G T+ EIAEKL ++ ++V L KL R + +A+ Sbjct: 173 LVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVAR 216 >gi|264677722|ref|YP_003277628.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|299530281|ref|ZP_07043706.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|262208234|gb|ACY32332.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|298721652|gb|EFI62584.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 253 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLTERETSCLQL 184 + + +V+ + L+ + KR + + L+ RE L++ Sbjct: 144 SWFGNYPQAVLQVVNGGASITPSLARRLLQRYDKRPATGAVPGSGMSDRLSSRECEVLRM 203 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G TS EI +L +S TVN ++ + KL R QA+ A G+ Sbjct: 204 VASGNTSAEIGVQLEISTMTVNTHIKNIYRKLQVRTRAQAVRFAYLRGW 252 >gi|239979006|ref|ZP_04701530.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291450884|ref|ZP_06590274.1| two-component system regulator [Streptomyces albus J1074] gi|291353833|gb|EFE80735.1| two-component system regulator [Streptomyces albus J1074] Length = 237 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 151 GACYQVITDFLELFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 G V+ ++ L + A LT RET L+L G + ++IAE+L +S TV Sbjct: 136 GLAGLVLGEYRRLAAGPAPTRGKPDAPRLTARETEVLRLVAKGLSYKQIAERLVISHRTV 195 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL NR++ + AI G Sbjct: 196 QNHVQNTLGKLQLHNRVELVRYAIEAGL 223 >gi|239929935|ref|ZP_04686888.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438269|ref|ZP_06577659.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341164|gb|EFE68120.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARN---LTERETSCLQ 183 ++A + A G ++I +F L + R+ LTERET L Sbjct: 105 DASADQLAEAVRVVAAGDAMLAPGITRRLIAEFSRLAPEPRTPLKERVGDLTERETEVLA 164 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA +L ++ TV ++G VKL +R QA A G + Sbjct: 165 LIARGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 215 >gi|157151124|ref|YP_001451003.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075918|gb|ABV10601.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 199 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 43/73 (58%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A DG +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAADGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|106879460|emb|CAJ20013.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 225 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT RE L+L G ++ EIA L L TV +++ KL NR Sbjct: 145 AARPGAAPGVPGLTGRELEVLRLMAAGMSNAEIAGHLSLGEATVKSHVSRLLGKLGLRNR 204 Query: 222 IQAIAKAIRFGYI 234 QAIA A R G + Sbjct: 205 SQAIACAYRTGLV 217 >gi|152978046|ref|YP_001343675.1| two component LuxR family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150839769|gb|ABR73740.1| two component transcriptional regulator, LuxR family [Actinobacillus succinogenes 130Z] Length = 209 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT--------- 158 L + + V + +I L + + + I Sbjct: 72 LRNEGVDARIVILTVSDAKNDIFALIDAGADGYLLKDTEPDVLLVQLKRIAGGEVVLSDS 131 Query: 159 --DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 D L +LT+RE LQ G ++++IA KL +S TV ++ + KL Sbjct: 132 IKDLLLERHASKDPIYSLTDREMDVLQQIATGLSNKQIAGKLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A + Sbjct: 192 NVHSRVAATVLYLEH 206 >gi|311068596|ref|YP_003973519.1| two-component response regulator DesK [Bacillus atrophaeus 1942] gi|310869113|gb|ADP32588.1| two-component response regulator (DesK) [Bacillus atrophaeus 1942] Length = 199 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 40/72 (55%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LTERE L+L DG ++EIA +L + TV Y+ KL+ NR Sbjct: 126 ELMEDIYSEANPLTEREKEVLELVADGKNTKEIANELSIKSGTVRNYISMILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|269128421|ref|YP_003301791.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313379|gb|ACY99753.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 210 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEF------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 VR G + + + + A + + LT Sbjct: 92 VRGGARGYVTKTISGPELTDAIGRVAEGDAVFSPRLAGFVLDAFAATAAPPIDPELDQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV ++ S KL NR + A + Sbjct: 152 QREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNRHELSRWAAARRLV 210 >gi|271964734|ref|YP_003338930.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507909|gb|ACZ86187.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--------FKKRSSAARNLT 175 L +G+++ + LA V + A G + L ++ ++T Sbjct: 96 LRAGASGFLLKDASAQQLAEAVRVVAAGEALLAPSVTRRLISEFARVGPRRPRGRLDDIT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERET L L G +++EIAE+L LS TV ++G KL+ +R QAI A G + Sbjct: 156 ERETEVLALIAQGRSNQEIAEELVLSEQTVKTHVGRILAKLNLRDRAQAIVHAYETGLV 214 >gi|224368539|ref|YP_002602702.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] gi|223691255|gb|ACN14538.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] Length = 217 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 32/68 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S L+ RE L L +G ++++IA+ L +S TV + S +LD I Sbjct: 146 GSSFPGGTLSPREEEVLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLI 205 Query: 226 AKAIRFGY 233 AIR GY Sbjct: 206 KYAIRHGY 213 >gi|206563900|ref|YP_002234663.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198039940|emb|CAR55918.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 287 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 70/245 (28%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + A + L Sbjct: 46 TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFARERVESLYLHEAFT--PATYRGDYV 103 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQ----------SIQEETVIESSGQLSVRLEGGLLPFA 116 D +PI+W + V ++ ++ + Sbjct: 104 RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDDDSCVSPAALDGFLQTMQDDGMCS 163 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 164 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 222 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 223 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 282 Query: 230 RFGYI 234 + I Sbjct: 283 KLELI 287 >gi|156976607|ref|YP_001447513.1| transcriptional dual regulator NarL [Vibrio harveyi ATCC BAA-1116] gi|156528201|gb|ABU73286.1| hypothetical protein VIBHAR_05381 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156 L + V ++ + + +++ + Q Sbjct: 65 LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVDLLKQAHEGDKAYSQA 124 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L + + LT+RET LQ G+ +++IA++L +S TV ++ S KL Sbjct: 125 VAKYLNEREGQEDVFDTLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 184 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 185 KVPSRTAATVLYLER 199 >gi|56962819|ref|YP_174545.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909057|dbj|BAD63584.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 43/99 (43%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 +F + L E++++ A + + L ERE ++L G G + Sbjct: 110 LFATIEKALLGELVLDGQVAAKVMPKLLQHSAPQEKEQIPPLAEREKEIIRLVGQGRNNA 169 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 EIA +L LSV TV Y+ +KL +R Q A++ Sbjct: 170 EIAAELYLSVGTVKNYISQLFIKLGVRDRTQLAIFAVKH 208 >gi|225352800|ref|ZP_03743823.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156407|gb|EEG69976.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 248 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 183 PELDDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 242 Query: 229 IRFGYI 234 + Sbjct: 243 YENHLV 248 >gi|37520382|ref|NP_923759.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211375|dbj|BAC88754.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 212 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGD 187 S L V A + L + A L+ERE L+L D Sbjct: 105 ATAGIASRLLAAVASVRDGAAWLDPDIADRVLRDLGRIPQAGADNPLSEREMEVLKLIAD 164 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI +L ++ TV ++ + KL +R+QA +A+R G+I Sbjct: 165 GLTNAEIGRRLYIASGTVRVHVSNIIAKLGVNDRVQAAVRALREGWI 211 >gi|126173479|ref|YP_001049628.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|125996684|gb|ABN60759.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] Length = 216 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%) Query: 162 ELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ + + + + L+ERE L G++++EIA + L+ TV ++ + K Sbjct: 138 QMSEPKPAPSVGVTRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTK 197 Query: 216 LDAVNRIQAIAKAIRFGYI 234 LD +R QA+ K ++ I Sbjct: 198 LDCRDRTQAVLKGLQLALI 216 >gi|213850302|ref|ZP_03381200.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 217 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 14/134 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQA 224 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAA 204 >gi|307153141|ref|YP_003888525.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983369|gb|ADN15250.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 220 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT+RE L L G+T++EIAE+L ++V TV ++ + KLD +R A AI+ Sbjct: 157 QPLTKRELEILALIATGHTNQEIAERLQITVGTVRVHVHTILQKLDVRDRTSAAVLAIQK 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|330447815|ref|ZP_08311463.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492006|dbj|GAA05960.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 214 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + L+ RE L+ G +S++IA+ L +S TV + + KLD + + Sbjct: 146 AAPEVNPLSRREEGILKHVAQGLSSKQIAKALDISYRTVETHRQNIKHKLDLHSTAELAK 205 Query: 227 KAIRFGYI 234 A+ G + Sbjct: 206 YALEKGLV 213 >gi|326792257|ref|YP_004310078.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] gi|326543021|gb|ADZ84880.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] Length = 519 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L L +G ++ EI ++L L++ TV ++ KL+ NRIQA+++A + G Sbjct: 458 LTPKEREILSLVAEGRSNAEIGDQLYLTIGTVKWHMNHILGKLEVKNRIQAVSEARKLGE 517 Query: 234 I 234 I Sbjct: 518 I 518 >gi|229490673|ref|ZP_04384511.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229322493|gb|EEN88276.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 227 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 1/114 (0%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETS 180 V G + L+ A + A + + + +SS+ LT+RE Sbjct: 114 VHAGARGYVVKDVDTTELVRAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELE 173 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G ++ +I E+L +S TV ++ + KL+ R +A+ A + G I Sbjct: 174 VLRLLANGLSNIKIGERLFISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 227 >gi|288574154|ref|ZP_06392511.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569895|gb|EFC91452.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 214 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 33/80 (41%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ LT RE L L +G T+ E+AE+L LS+ TV + Sbjct: 131 HIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTVGTHRQHIMN 190 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL N + AIR G I Sbjct: 191 KLKLKNLADLVKYAIRNGMI 210 >gi|182415000|ref|YP_001820066.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842214|gb|ACB76466.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 215 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + S+ A LT+RE LQL + ++++EIA KLG+S+ TV+ + + Sbjct: 128 AVAALLRNVVANPSASNTADFLTDREREILQLVAESHSTKEIAAKLGISIKTVDNHRTNL 187 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL+ + A+ G I Sbjct: 188 MRKLNLHDVASLTRYALEVGLI 209 >gi|77359651|ref|YP_339226.1| regulator in two-component regulatory system; LuxR [Pseudoalteromonas haloplanktis TAC125] gi|76874562|emb|CAI85783.1| putative regulator in two-component regulatory system ; LuxR family [Pseudoalteromonas haloplanktis TAC125] Length = 216 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ ++ +LT ++ LQ +G +++IA +L +S TV A++ + KL NR Q Sbjct: 141 DREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQ 200 Query: 224 AIAKAIRFGY 233 A+ A + Sbjct: 201 AVLIAAKLQL 210 >gi|254883648|ref|ZP_05256358.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294775634|ref|ZP_06741143.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|319642280|ref|ZP_07996939.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|254836441|gb|EET16750.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294450576|gb|EFG19067.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|317386136|gb|EFV67056.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 216 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 38/86 (44%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 C + + K+ LT E L+L G T++EIA + LSV+TV + Sbjct: 124 LQYMCTRAVWLLQHKEDKKDKLVSPLTVTEREILKLMALGKTTKEIAAERFLSVYTVMTH 183 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ N +A A+R G + Sbjct: 184 RKNIFRKLEVNNVHEATKYALRAGIV 209 >gi|258516415|ref|YP_003192637.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780120|gb|ACV64014.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 223 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL++RE L+L +++ EIA L +S+ TV ++ + KL NR QAI +I Sbjct: 157 ENLSKREMEILKLMSQNHSNTEIAGMLYISLPTVKTHVSNILRKLGQQNRAQAILYSIAT 216 Query: 232 GYI 234 G I Sbjct: 217 GLI 219 >gi|220909919|ref|YP_002485230.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866530|gb|ACL46869.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARN-----LTERETS 180 + I A + + + + N L++RE Sbjct: 104 SGADAYCIKGASVDRLLSAIAAAQEGATYLDPQIARQVIEHLKPPSNNNMLGQLSQRELD 163 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +GY++ EIA KL LS +T+ ++ KL +R+QA A+R G + Sbjct: 164 VLKLMVEGYSNPEIATKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 217 >gi|163839607|ref|YP_001624012.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953083|gb|ABY22598.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 219 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQL 184 S ++A+ + A ++I +F + + ++ NLT+RE L L Sbjct: 106 DALADELVSAVRIVASGEALLAPSVTKRLIENFAKSRPRSAANKTRLNNLTDREREVLTL 165 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G +++EIA L ++ TV ++ KLD +R+QA+ A G + Sbjct: 166 VGRGLSNQEIAAALFIAEQTVKTHVSKVLTKLDLRDRVQAVVLAYDTGLV 215 >gi|78061706|ref|YP_371614.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77969591|gb|ABB10970.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 301 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 68/245 (27%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E S + + + FA + + A + L Sbjct: 60 TLAHAQSTAERSRIVASLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PATYRGDYV 117 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQ--SIQEETVIESSGQLSVRLE--------GGLLPFA 116 D +PI+W ++ E G + Sbjct: 118 RHNHHDIDPRTLGARVCNMPIVWDLQQLRREHRERDDGPRVTPAALDGFLQNMQDDGMCS 177 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 236 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296 Query: 230 RFGYI 234 + I Sbjct: 297 KLELI 301 >gi|161502599|ref|YP_001569710.1| transcriptional regulator NarP [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863946|gb|ABX20569.1| hypothetical protein SARI_00645 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 214 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|310287681|ref|YP_003938939.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] gi|309251617|gb|ADO53365.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] Length = 255 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L G +++EIA+KL +S+ T ++ K++A +R+QA+ A Sbjct: 190 PELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFA 249 Query: 229 IRFGYI 234 G + Sbjct: 250 YDNGLV 255 >gi|296120645|ref|YP_003628423.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296012985|gb|ADG66224.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 220 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAA------RNLTE 176 +GY++ TS +A EV+ Q+ LEL A +L+ Sbjct: 103 AGADGYLLKTSSAEEIARAIEEVLSGGASMTPQIARKVLELMSNTPPKATVPKSPSDLSL 162 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G T +EIA L LS HT++ +L + KL NR A+A AIR G + Sbjct: 163 REQDVLKQVVRGLTKDEIARALKLSPHTIDTHLRNIYQKLHVHNRAGAVAIAIRDGLV 220 >gi|254410364|ref|ZP_05024143.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182570|gb|EDX77555.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 212 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G +++T S+A LT RE L+L G + EIA+ L +S TV ++ Sbjct: 128 GIGQKIMTQIPASVSNSSTAWDELTPREQEILRLIATGANNREIAQTLYISQKTVKNHIT 187 Query: 211 SATVKLDAVNRIQAIAKA 228 + +L+ +R QA A Sbjct: 188 NILSRLNLRDRTQAAIWA 205 >gi|116073216|ref|ZP_01470478.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] gi|116068521|gb|EAU74273.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] Length = 227 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L++ G +++EI+E L +S TV +++ + K+ +R QA+ KAIR G Sbjct: 168 LTDREMEVLKVLSSGMSNKEISESLCISSETVKSHVSTIIGKMGVKDRTQAVIKAIRAGI 227 >gi|56697383|ref|YP_167751.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56679120|gb|AAV95786.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 245 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 22/235 (9%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S+ + + + + A ++ I P L N+ D Sbjct: 4 ARSIDDFASVVVPFCRDVFAVQ-SVLAIRFHPSGPPEPLFKWVLENHLEALFDRDYTRFG 62 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D F + + + + G + + F R+ + Sbjct: 63 YLLDPFYKLAVETENWVACPLREIAPDRFETSEYFSNYFGPMGLVDDMGFVARVDDDTSV 122 Query: 131 YVIFTSE--FLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNL---------- 174 + I ++ L + K+ L Sbjct: 123 NMSIGRHAGKRRFRASEIARFRSLSTVLVPSLLSVLGKPTKRNPGVPATLEHRFLTISQN 182 Query: 175 -----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++RE L G++S I KLG+S +TV + + KL+ ++ + Sbjct: 183 GENEISDREAEVATLIVQGHSSRAIGYKLGISSNTVKVHRRNLYKKLNISSQSEL 237 >gi|302869712|ref|YP_003838349.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503806|ref|YP_004082693.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302572571|gb|ADL48773.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410425|gb|ADU08542.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 215 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G V+ ++ L + + LTERET L+L G + ++IA++L LS TV Sbjct: 128 GLAGLVLGEYRRLAAEPPAPHDDAPRLTERETEVLRLVAKGLSYKQIADRLSLSHRTVQN 187 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL NR++ AI G Sbjct: 188 HVQNTLGKLQLHNRVELTRYAIERGL 213 >gi|284033634|ref|YP_003383565.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283812927|gb|ADB34766.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 212 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 2/122 (1%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 AG + + + + A E ++ + Sbjct: 93 GLRAGACGFLPKDTRPDALLDAIRT--VAAGEALLSPGATRAVITRALSRPDAPPPERLA 150 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L G +++EIA+ L +S T ++ KL A +R+ + A G Sbjct: 151 SLTAREREVLRLVAAGRSNQEIADDLVVSPLTAKTHVARILAKLGARDRVHLVIAAYEAG 210 Query: 233 YI 234 + Sbjct: 211 LL 212 >gi|226356417|ref|YP_002786157.1| DNA-binding response regulator [Deinococcus deserti VCD115] gi|226318407|gb|ACO46403.1| putative DNA-binding response regulator [Deinococcus deserti VCD115] Length = 194 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 4/129 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 L G+ ++ E E QV + R Sbjct: 67 LRLTHPEVVGVLITTFSEPAIVQAARSAGARGYVSKETDPE--SLARQVRDIVMHPEIDR 124 Query: 168 SSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE+ L L GY+++EIA+ LG+S TV +L KLDA +R +A+ Sbjct: 125 LPHVDVPRLTPRESEVLPLLALGYSNKEIAKNLGVSPDTVKDHLARLYSKLDAGDRTEAV 184 Query: 226 AKAIRFGYI 234 ++A G + Sbjct: 185 SRARSIGLL 193 >gi|187926842|ref|YP_001893187.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241665171|ref|YP_002983530.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728596|gb|ACD29760.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240867198|gb|ACS64858.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 218 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 7/106 (6%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGD 187 + A E +I + +K AA LT RE ++ Sbjct: 112 LVAGIRRAAAGEPVISDRMTAK--LVAHFRAPEKAPPAATTPMPDRLTPREREIVKGLAR 169 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA L ++ TV ++ + KL+ +R+Q A+ G Sbjct: 170 GESNKEIARTLDVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 215 >gi|284046383|ref|YP_003396723.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950604|gb|ADB53348.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 224 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 30/71 (42%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT RE +L G T+ EIA +L L TV ++ S KL NR Q Sbjct: 144 DAGLTGRLAELTPRELDVARLVARGMTNAEIAAELFLGEGTVKTHVTSILSKLALRNRTQ 203 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 204 IVVAAYESGLV 214 >gi|262283291|ref|ZP_06061057.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] gi|262260782|gb|EEY79482.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] Length = 199 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|171741205|ref|ZP_02917012.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC 27678] gi|283455432|ref|YP_003359996.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|306823500|ref|ZP_07456875.1| two component system response regulator [Bifidobacterium dentium ATCC 27679] gi|309802650|ref|ZP_07696754.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] gi|171276819|gb|EDT44480.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC 27678] gi|283102066|gb|ADB09172.1| Two-component response regulator [Bifidobacterium dentium Bd1] gi|304553207|gb|EFM41119.1| two component system response regulator [Bifidobacterium dentium ATCC 27679] gi|308220714|gb|EFO77022.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] Length = 230 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 168 DRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 227 Query: 232 GYI 234 + Sbjct: 228 RIV 230 >gi|315182709|gb|ADT89622.1| two component transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 197 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERET 179 V+ G +S+ L+LA N+V C Q L +K + L++RE+ Sbjct: 82 VKAGAKGYVLKDVSSDELVLAINQVAQGRSYLCPQASDKLLAQFNEKPAERDETLSKRES 141 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G +++IA+ L +SV TV + KL A + + A+ G + Sbjct: 142 DVLKAIVSGCGNKDIADTLHISVRTVETHRLRIKKKLGASSTAALVKLALEKGLV 196 >gi|297559326|ref|YP_003678300.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843774|gb|ADH65794.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 210 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ + LA V A G ++ ++R A L+ RE L Sbjct: 96 AGATGYLLKDTPRAELAEAVRAAARGETVLTGRLAGRLFTGMRRRGEPAAVLSPREVEVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LA +G T+ I L +S TV +L KL +R A+++AIR G + Sbjct: 156 RLASEGRTNAAIGRALHISPTTVKTHLMRVYDKLGVGDRTSAVSQAIRRGLL 207 >gi|172063708|ref|YP_001811359.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996225|gb|ACB67143.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 243 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 21/230 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNILIETY 72 + L A FA + + EL Sbjct: 12 AADWQRALRACVAAFDA--FASPSAIVFYRLDLNGEPADFELFGMPESMHRTYLA-RYRM 68 Query: 73 GDDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVR----------LEGGLLPFAG 117 D +G+ ++ + +E S+ + R L G Sbjct: 69 LDPLHPSRCAAGVRAVVTLASQLPDERRAASAYWTRFLRRHEVADVVEIWLRDDAGRTVG 128 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLT 175 +R G F + + + L + +R LT Sbjct: 129 AFSLLRFGKGDAEGTSTAGRFAPGEVDALARLQPVAEAALVPLLRARRGIRRIDCEERLT 188 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE +L DG +++EIA L L T+ +L KL NR + + Sbjct: 189 YREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 238 >gi|217974227|ref|YP_002358978.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217499362|gb|ACK47555.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 216 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ Sbjct: 154 ELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQL 213 Query: 232 GYI 234 I Sbjct: 214 ALI 216 >gi|325965270|ref|YP_004243176.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323471357|gb|ADX75042.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 230 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT RET L+ +G ++ EIA + LS TV ++ KL +R Sbjct: 151 RPAPAPDPLLADLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDR 210 Query: 222 IQAIAKAIRFGYI 234 +QA+ A G + Sbjct: 211 VQAVVYAYETGLV 223 >gi|303326587|ref|ZP_07357030.1| putative twin-arginine translocation pathway signal [Desulfovibrio sp. 3_1_syn3] gi|302864503|gb|EFL87434.1| putative twin-arginine translocation pathway signal [Desulfovibrio sp. 3_1_syn3] Length = 598 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +R L+ RE L L G ++ +IA +L LS TV ++ + +KL NR+ Sbjct: 100 MQFRRIDPPWGLSLRELDVLTLLSAGLSNPDIAHELFLSPRTVAKHVENIFIKLAVKNRV 159 Query: 223 QAIAKAIRFGYI 234 A+ A+ G + Sbjct: 160 HAVRLALDHGLV 171 >gi|225025132|ref|ZP_03714324.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC 23834] gi|224942093|gb|EEG23302.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC 23834] Length = 224 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + V + SA LT RE L+ GY+++ IA+++ Sbjct: 121 AANGDNVFSPEMMACMVQSLIRPAQPATESALDTLTSRELEVLRYLAVGYSNKIIAKRMD 180 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ TV ++ + KL+ +R+QA A++ Sbjct: 181 LAESTVKVHVQNILRKLELGSRVQAAVYAVQHNL 214 >gi|169825786|ref|YP_001695944.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990274|gb|ACA37814.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 199 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE+ L L +G T++EIA +L LS TV Y+ + KL+ NRI+AIA+ G Sbjct: 137 PLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKG 196 Query: 233 Y 233 + Sbjct: 197 W 197 >gi|88856002|ref|ZP_01130664.1| two-component response regulator [marine actinobacterium PHSC20C1] gi|88814869|gb|EAR24729.1| two-component response regulator [marine actinobacterium PHSC20C1] Length = 209 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY++ + + + A G L + + R A L+ERET L L Sbjct: 96 AGASGYLLKAAPQDEILAGLRSVARGEVALAPSIAALLVKRMREPARVALSERETQVLAL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ IA L +S TV +L KLD +R +A+ KA+ G + Sbjct: 156 VAEGNSNRAIAAALFVSEATVKTHLIHVFEKLDVKDRTRAVTKAMELGLL 205 >gi|306837140|ref|ZP_07470077.1| two component system response regulator [Corynebacterium accolens ATCC 49726] gi|304566988|gb|EFM42616.1| two component system response regulator [Corynebacterium accolens ATCC 49726] Length = 223 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + +LT RE LQL G ++ +I L LS TV ++L KL +R Sbjct: 151 RLMTRVRTPRTSLTPRELEVLQLVAAGASNRQIGHDLMLSEATVKSHLVHIYDKLGVRSR 210 Query: 222 IQAIAKAIRFGYI 234 A+A A G + Sbjct: 211 TSAVAAAREQGVL 223 >gi|302555756|ref|ZP_07308098.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302473374|gb|EFL36467.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177 +GYV+ + L GA +I ++L + + LT R Sbjct: 103 AGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRHGEEPPEQILTPR 162 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G++S+EIAE L +S+ TV+ + + KL +R++ AIR G I Sbjct: 163 EEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGLI 219 >gi|197335823|ref|YP_002157200.1| regulatory protein CsgD [Vibrio fischeri MJ11] gi|197317313|gb|ACH66760.1| regulatory protein CsgD [Vibrio fischeri MJ11] Length = 214 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + + ++I + E S + +LT RE+ L+L G ++ +IA L +S +T Sbjct: 121 EMWLSRKIINELIFAYREKQSAILSTSISLTTRESEILRLLASGASNVDIANSLFVSENT 180 Query: 205 VNAYLGSATVKLDAVNRIQAIAKA 228 V +L + KL+ NR+QA+ A Sbjct: 181 VKTHLYNVFKKLNVKNRLQAMMWA 204 >gi|157059906|dbj|BAF79713.1| putative two-component system response regulator [Streptomyces kasugaensis] Length = 215 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 40/109 (36%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + + A G + + S +LT+RE L Sbjct: 106 AGATGYLLKAERPEELFSAIQAAAQGRTTLSAPVASRVMARMRSPRPSLTDRERDILAQL 165 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A+A A + Sbjct: 166 AQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 214 >gi|149923436|ref|ZP_01911840.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149815688|gb|EDM75215.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 220 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 7/120 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAARNL 174 +R G L+ A + + + L + A +L Sbjct: 97 IRAGASGYLLKGSGLSDLVTAIREVAGGNAFFSPTVAKILLQESRGERSVKEAPDPADSL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G+G +S EIA+ LGLSV T+ + G KL N + +AIR G + Sbjct: 157 TKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVAGLVRQAIRIGLV 216 >gi|148240620|ref|YP_001226007.1| LuxR family transcriptional regulator [Synechococcus sp. WH 7803] gi|147849159|emb|CAK24710.1| Transcriptional regulator, luxR family [Synechococcus sp. WH 7803] Length = 92 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + +L+ RE ++L +G T++EIAE+L +S TV+ ++ + K + NR+ Sbjct: 4 AEGADAMNVSLSARELEIIELVSEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVA 63 Query: 224 AIAKAIRFGYIC 235 + A+ G IC Sbjct: 64 LLNWAMDHGKIC 75 >gi|326445496|ref|ZP_08220230.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT RE +L G + IA ++ +S TV ++ + KL +R Sbjct: 166 AAGTGPTGVPDGLTPREREVWRLIAAGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDR 225 Query: 222 IQAIAKAIRFGYI 234 QA+ A G + Sbjct: 226 AQAVIAAYEAGLV 238 >gi|294102345|ref|YP_003554203.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293617325|gb|ADE57479.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 231 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G ++ E+A K+ LS TV ++ KLD +R QA A R G Sbjct: 151 ELTPREKEILYWLAQGLSNSEVASKMVLSEKTVKNHVSHVLKKLDLRDRTQAAILAWRIG 210 Query: 233 Y 233 + Sbjct: 211 F 211 >gi|307150964|ref|YP_003886348.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981192|gb|ADN13073.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 90 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 39/63 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE ++L +G T+ EIA +L +S TV+ ++ + K NR++ + A+++G Sbjct: 11 SLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|110636531|ref|YP_676738.1| two component LuxR family transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279212|gb|ABG57398.1| two component transcriptional regulator, LuxR family [Cytophaga hutchinsonii ATCC 33406] Length = 215 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ G +++ IA+KL +SV TV + + KLD N + I KA+ Sbjct: 152 AETLTKRELEVLKEVSMGLSTKLIADKLFISVRTVETHRINLMKKLDVHNSAELIKKAMD 211 Query: 231 FGYI 234 I Sbjct: 212 LNII 215 >gi|315295459|gb|EFU54787.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 153-1] Length = 230 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 14/144 (9%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 81 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ +R+ A ++ I Sbjct: 201 NLLRKLNVRSRVAATILFLQQRII 224 >gi|161616094|ref|YP_001590059.1| hypothetical protein SPAB_03896 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365458|gb|ABX69226.1| hypothetical protein SPAB_03896 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 227 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 18 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + ++ + + I +R G + + Sbjct: 70 SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + LT +E + + +G +++ IA +L + Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLESILTAKEREIVGMVCEGASNKLIARQLNI 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215 >gi|282898244|ref|ZP_06306235.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281196775|gb|EFA71680.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 97 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L G T++EIA KL +S TV+ ++ + K NR+ + A+++G Sbjct: 12 LSDREMQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|37676043|ref|NP_936439.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|37200583|dbj|BAC96409.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] Length = 219 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQ G ++ EIA+ L +S HT+ ++L + K+D NR QA A A R Sbjct: 160 ELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKRN 218 >gi|294816579|ref|ZP_06775221.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|294321394|gb|EFG03529.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT RE +L G + IA ++ +S TV ++ + KL +R Sbjct: 145 AAGTGPTGVPDGLTPREREVWRLIAAGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDR 204 Query: 222 IQAIAKAIRFGYI 234 QA+ A G + Sbjct: 205 AQAVIAAYEAGLV 217 >gi|206562366|ref|YP_002233129.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198038406|emb|CAR54363.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 510 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 89 WQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFTSEFLMLA 142 W I+ + V++ + ++ S+ Sbjct: 329 WSRIEGRLAGDGHVRNVDVQIRTRDGDVRDCVVSADPVAIHGRDCLLVALLDISDRKRTE 388 Query: 143 NEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTS 191 E+ + +A +I + + + A LT RE L G Sbjct: 389 MELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLAD 448 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA +LGL+ +TV ++ + KLD +R +AI A G + Sbjct: 449 KEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|223936027|ref|ZP_03627941.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895249|gb|EEF61696.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 35/77 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ F NL+ RE L G+ +EIAEKLG+S TV+ Y+ Sbjct: 129 HIARKVVQSFRAPTAATPPPEHNLSTREQEVLDCLSQGFLYKEIAEKLGISYETVHTYIR 188 Query: 211 SATVKLDAVNRIQAIAK 227 KL R +A+AK Sbjct: 189 RIYEKLQVRTRTEAVAK 205 >gi|160874438|ref|YP_001553754.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160859960|gb|ABX48494.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315266674|gb|ADT93527.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 216 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%) Query: 162 ELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ + + + + L+ERE L G++++EIA + L+ TV ++ + K Sbjct: 138 QMSEPKPAPSVGETRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTK 197 Query: 216 LDAVNRIQAIAKAIRFGYI 234 LD +R QA+ K ++ I Sbjct: 198 LDCRDRTQAVLKGLQLALI 216 >gi|317495606|ref|ZP_07953974.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914420|gb|EFV35898.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 199 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + L+++ET L+ G +++EIA +L LS T Y+ + KLD NR Sbjct: 127 ELMENIFMNHNPLSKQETLLLKKVKHGLSNKEIAAELFLSEGTTRNYISNILTKLDCKNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ KA G+I Sbjct: 187 TEAVKKATEKGWI 199 >gi|300741753|ref|ZP_07071774.1| two-component system response regulator [Rothia dentocariosa M567] gi|300380938|gb|EFJ77500.1| two-component system response regulator [Rothia dentocariosa M567] Length = 250 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ RE L+L G ++ EI+ L LS T+ ++ KLDA +R+QA+ A Sbjct: 187 QTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLAKLDARDRVQAVIMAYEA 246 Query: 232 GYI 234 G + Sbjct: 247 GIV 249 >gi|284041827|ref|YP_003392167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946048|gb|ADB48792.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 13/112 (11%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V + + + ++ +L L ++ R+LTERE Sbjct: 116 VHVVAGGDALLAPSATRRLLDR-------------FAGELPGDERPLPDLRDLTERELDV 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++ E+A L LS TV ++ S KL +R+QA+ A G Sbjct: 163 LRLVAQGLSNAELAAYLVLSEATVKTHVSSVLRKLGLRDRVQAVVLAYDVGL 214 >gi|302548366|ref|ZP_07300708.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302465984|gb|EFL29077.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERET 179 +G++ + +A+ + + A G L R LT RE Sbjct: 108 AGASGFIRKRAPAQQIAHAIRLVASGDSVLFPEAVARLTTGRPPRREAAARVAALTRREA 167 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L +G T+++IAE L +S+ TV ++G+ KL A NR QA+ A G Sbjct: 168 EILRLMAEGLTNQQIAEVLTVSLETVKTHVGNVLTKLGAGNRTQAVILAFEAGL 221 >gi|253701702|ref|YP_003022891.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251776552|gb|ACT19133.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 223 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G ++ +IA + LS TV + + KLD ++++ + A R G Sbjct: 157 LTPREQQVLRLVAEGSSTRQIAAAIELSPKTVENHRTNLMKKLDVHSKMELVKYAARLGL 216 Query: 234 I 234 I Sbjct: 217 I 217 >gi|259649548|dbj|BAI41710.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 203 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ + LTERE + L G +S++IA L LS TV YL + KL NRI+AI Sbjct: 136 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 195 Query: 228 AIRFGYI 234 A R ++ Sbjct: 196 AKRNKWL 202 >gi|229000917|ref|ZP_04160386.1| Response regulator receiver [Bacillus mycoides Rock3-17] gi|228758834|gb|EEM07909.1| Response regulator receiver [Bacillus mycoides Rock3-17] Length = 224 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K SS LT+RE LQL G ++EIA L +S V ++ + KL+ +R QA Sbjct: 154 PKASSFIEPLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQA 213 Query: 225 IAKAIRFGYI 234 + I + Sbjct: 214 VVLGICMQLV 223 >gi|229008966|ref|ZP_04166312.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228752300|gb|EEM01982.1| Response regulator receiver [Bacillus mycoides Rock1-4] Length = 215 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K SS LT+RE LQL G ++EIA L +S V ++ + KL+ +R QA Sbjct: 145 PKASSFIEPLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQA 204 Query: 225 IAKAIRFGYI 234 + I + Sbjct: 205 VVLGICMQLV 214 >gi|226305274|ref|YP_002765232.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184389|dbj|BAH32493.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 210 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 1/114 (0%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETS 180 V G + L+ A + A + + + +SS+ LT+RE Sbjct: 97 VHAGARGYVVKDVDTTELVRAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELE 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G ++ +I E+L +S TV ++ + KL+ R +A+ A + G I Sbjct: 157 VLRLLANGLSNIKIGERLFISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 210 >gi|212640069|ref|YP_002316589.1| transcriptional regulator LuxR family [Anoxybacillus flavithermus WK1] gi|212561549|gb|ACJ34604.1| Transcriptional regulator LuxR family [Anoxybacillus flavithermus WK1] Length = 194 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 2/116 (1%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 + FPV+ + +IF S + N I+ +I + + + Sbjct: 75 GLLTWLVFPVQTKTNDCRVLIFISYPYHDDENYFIVCLIETVTLIIQEKYR-EQFLALEI 133 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE L GY+++EIA++L LS HT+ ++ + KLD R Q IAK Sbjct: 134 EQLSERERQVFFLLLKGYSNKEIAKELILSEHTIKNHINNLFQKLDVKRRSQLIAK 189 >gi|27367916|ref|NP_763443.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6] gi|27359489|gb|AAO08433.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6] Length = 210 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQ G ++ EIA+ L +S HT+ ++L + K+D NR QA A A R Sbjct: 151 ELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKRN 209 >gi|298248387|ref|ZP_06972192.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551046|gb|EFH84912.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 215 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 35/67 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A LTERE L L G + EIA++L LS+ TV +L + KL +R+QAI Sbjct: 148 PPQAFPELTEREREILSLLAQGLNNAEIAQRLVLSLKTVRNHLSNVFNKLQVADRVQAII 207 Query: 227 KAIRFGY 233 +A G Sbjct: 208 RAREAGL 214 >gi|293394993|ref|ZP_06639281.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] gi|291422521|gb|EFE95762.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] Length = 222 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-----------V 156 + + I V + +I L + E + Sbjct: 85 MRHDGVDARIIVLTVSDARNDVYALIDAGADGYLLKDSEPEQLLTSIRLAAEGENVISDA 144 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D+L ++ +LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 145 VADYLSSRSEQHDPFADLTERELDVLQEVARGMSNKQVAVQLHISEETVKVHIRNMLRKL 204 Query: 217 DAVNRIQAIAKAIRF 231 D +R+ A + Sbjct: 205 DVRSRVAATVMYLEH 219 >gi|269103218|ref|ZP_06155915.1| nitrate/nitrite response regulator protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163116|gb|EEZ41612.1| nitrate/nitrite response regulator protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 208 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 + + + V ++ + +I + Sbjct: 71 MRNEGISSTIVVLTVSDSRADIKALVAAGADGYLLKDTEPDELIALLHQALAGGEAYSSI 130 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++L + S LT+RE LQ G+ +++IA+ L +S TV ++ S KL Sbjct: 131 VKEYLSDDLAQDSLLSTLTDRELQILQEVAKGHRNKQIADTLFISESTVKVHMKSLLKKL 190 Query: 217 DAVNRIQAIAK 227 +R A Sbjct: 191 QVKSRTAATVL 201 >gi|257791491|ref|YP_003182097.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475388|gb|ACV55708.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 214 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 5/122 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAAR 172 + + +R G TSE L+ A + E + +T L ++ + + Sbjct: 91 LFYTLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGGEEEDRSYQ 150 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQL G+T++EI+E++ LSV TV A+ KL R + A+R Sbjct: 151 QLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHK 210 Query: 233 YI 234 + Sbjct: 211 LL 212 >gi|258508232|ref|YP_003170983.1| LuxR family two-component response regulator [Lactobacillus rhamnosus GG] gi|257148159|emb|CAR87132.1| Two-component response regulator, LuxR family [Lactobacillus rhamnosus GG] Length = 202 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ + LTERE + L G +S++IA L LS TV YL + KL NRI+AI Sbjct: 135 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 194 Query: 228 AIRFGYI 234 A R ++ Sbjct: 195 AKRNKWL 201 >gi|240014094|ref|ZP_04721007.1| NarL/NarP [Neisseria gonorrhoeae DGI18] gi|240016529|ref|ZP_04723069.1| NarL/NarP [Neisseria gonorrhoeae FA6140] gi|240115736|ref|ZP_04729798.1| NarL/NarP [Neisseria gonorrhoeae PID18] gi|240118032|ref|ZP_04732094.1| NarL/NarP [Neisseria gonorrhoeae PID1] gi|240121656|ref|ZP_04734618.1| NarL/NarP [Neisseria gonorrhoeae PID24-1] gi|268601415|ref|ZP_06135582.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268603746|ref|ZP_06137913.1| two-component system response regulator [Neisseria gonorrhoeae PID1] gi|268585546|gb|EEZ50222.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268587877|gb|EEZ52553.1| two-component system response regulator [Neisseria gonorrhoeae PID1] Length = 218 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA Sbjct: 145 QRTQALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAA 204 Query: 226 AKAIRF 231 AIR Sbjct: 205 VYAIRH 210 >gi|119510573|ref|ZP_01629703.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119464734|gb|EAW45641.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 87 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE + L G T+++IA KL +S TV+ ++ + K NR+ + A+++G Sbjct: 11 SLSDRELQIIDLVAAGLTNQDIAVKLEISKRTVDNHISNILTKTQTENRVALVRWALQWG 70 Query: 233 YIC 235 IC Sbjct: 71 KIC 73 >gi|307324556|ref|ZP_07603763.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889800|gb|EFN20779.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 10/123 (8%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173 +R G +++ L A V+ IT L R SAA Sbjct: 98 LRAGASGFLLKDASADELAHAVRVVAAGDALLAPNITKRLIGEFSRVSAAAPRGPLRDRV 157 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERET L L G ++ EIA +L ++ TV ++ KL +R QA A Sbjct: 158 GDLTERETEVLTLIAQGLSNAEIAARLVVAEQTVKTHVSRILFKLGLRDRTQAAVFAYET 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|29828980|ref|NP_823614.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606085|dbj|BAC70149.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 43/121 (35%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + + V L + + +++ S Sbjct: 102 LRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSEPERGQAASSEVPDG 161 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L +G ++ EIA +L +S TV ++ + K +R QA+ A G Sbjct: 162 LTAREAEVLVLIAEGLSNHEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGL 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|56479027|ref|YP_160616.1| nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] gi|56315070|emb|CAI09715.1| Nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] Length = 226 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S L+ RE L G +++EIA KL L+ TV ++ + KL+ +R+QA Sbjct: 155 ASELNKLSPREREILAFLARGQSNKEIARKLELAESTVKIHVQNVLRKLNLTSRVQAAVF 214 Query: 228 AIRFGYI 234 A+ G + Sbjct: 215 AVEQGIV 221 >gi|320335412|ref|YP_004172123.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319756701|gb|ADV68458.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 213 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 9/102 (8%) Query: 140 MLANEVIIEAHGACYQ---------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + + + L ++ LT RE L L G + Sbjct: 108 DVDADELARVIRLVARGERFIQPTVAAKYLRLLAQRPQEPQEPLTPREHEVLALIARGDS 167 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ IA +LG+S TV ++ S KL NR +A +A G Sbjct: 168 NKRIAAQLGISDSTVKNHISSVLAKLQVRNRTEAALRARTLG 209 >gi|153832308|ref|ZP_01984975.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] gi|148871619|gb|EDL70474.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] Length = 217 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L+ +++ G + EL K LT RE L G ++ +IA+ L + Sbjct: 128 LSRDILNRLVGYLVNLNHTVTELDTKL---EIELTRREMQVLTALCQGGSNLDIADSLFV 184 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 S HTV ++L S KL+ NR+QAIA A R Sbjct: 185 SEHTVKSHLYSIFRKLEVKNRMQAIAWAKRN 215 >gi|326391343|ref|ZP_08212882.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] gi|325992606|gb|EGD51059.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] Length = 257 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLT 175 IA P+ + GY+ ++ + +E+++ Y++++D++ +F ++ +R L Sbjct: 138 CIAIPLIIDDEIIGYLDLSTIKDSMVDEMVVIVELLAYKIVSDYIRMFGNKAKNSRVKLK 197 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L+L GY IA++LG+S++TVN + + KLD + +AIAKAIR G I Sbjct: 198 EEQLKVLKLVTKGYKDIVIAKELGISINTVNYHKRNIFKKLDVRSTREAIAKAIRMGLI 256 >gi|317125624|ref|YP_004099736.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589712|gb|ADU49009.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 237 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+L G + EIA +L +S +TV ++ + KL +R++A A+R Sbjct: 171 PRLTERELGILRLVARGRLNREIARELFISENTVRNHIRNILDKLQMHSRMEAAMYAVRK 230 Query: 232 GYI 234 I Sbjct: 231 RLI 233 >gi|291455021|ref|ZP_06594411.1| two component system response regulator [Streptomyces albus J1074] gi|291357970|gb|EFE84872.1| two component system response regulator [Streptomyces albus J1074] Length = 297 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 11/209 (5%) Query: 28 IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH-FNSGLLP 86 ++A A + + L+ + D + L + + H P Sbjct: 14 LRALFAATPSFRIEGEAENGDALVELARLHAPDVVLMDAALPGPRVLEVVRHLARDQPHP 73 Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLP--FAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144 I + E + L G +G + G ++ Sbjct: 74 IGVVLLVSEQGPADTWVLEAARAGARGLLLKSGGQEAILSGVRDVAAGGIAMSTEFVSQ- 132 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + + +L ++ LT RE +L G T+++I+ +L LS T Sbjct: 133 -------ILKALHSAYLPAAERPFRDISLLTPREMQVFRLVSQGLTNQQISNRLVLSEAT 185 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V ++ KLD NR+ A+ A G Sbjct: 186 VKSHFNRICHKLDLRNRVDAVILAYETGI 214 >gi|302544370|ref|ZP_07296712.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461988|gb|EFL25081.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 232 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A Sbjct: 160 PELERLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLELRDRVQVVVMA 219 Query: 229 IRFGYI 234 G + Sbjct: 220 YETGLV 225 >gi|261401222|ref|ZP_05987347.1| nitrate/nitrite response regulator protein NarL [Neisseria lactamica ATCC 23970] gi|269208805|gb|EEZ75260.1| nitrate/nitrite response regulator protein NarL [Neisseria lactamica ATCC 23970] Length = 218 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 152 SLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|150003000|ref|YP_001297744.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|149931424|gb|ABR38122.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] Length = 214 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 38/86 (44%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 C + + K+ LT E L+L G T++EIA + LSV+TV + Sbjct: 122 LQYMCTRAVWLLQHKEDKKDKLVSPLTVTEREILKLMALGKTTKEIAAERFLSVYTVMTH 181 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ N +A A+R G + Sbjct: 182 RKNIFRKLEVNNVHEATKYALRAGIV 207 >gi|22298266|ref|NP_681513.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294445|dbj|BAC08275.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 209 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 13/141 (9%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD------- 159 RL+ + + + + IE + Sbjct: 69 RLKREFPDIRVVMLTSHQSALEAVAALSSGADAYCIKGERIERLLMAIAAAQEGATYLDP 128 Query: 160 ------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 L + + +L++RE L+L +GY++ EIA KL LS +TV ++ Sbjct: 129 QIARHVIQHLHSPQPTMDYHLSQRELDVLKLMVEGYSNPEIAGKLFLSPNTVKTHVRGIL 188 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 189 NKLAVDDRVQAAVVALRNGLV 209 >gi|254393192|ref|ZP_05008347.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] gi|294811637|ref|ZP_06770280.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440178|ref|ZP_08214912.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706834|gb|EDY52646.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] gi|294324236|gb|EFG05879.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A + A ++I +F L + R LTERET L Sbjct: 108 DASAAELAHAVRVVAAGDALLAPAVTKRLIAEFSRLTGAPRAPLRERVGTLTERETEVLA 167 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA L ++ TV ++G VKL +R QA A G + Sbjct: 168 LIAQGLSNAEIATALVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 218 >gi|153003783|ref|YP_001378108.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027356|gb|ABS25124.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 202 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 AA LT RE L L +G ++ IA +LG+S HT ++ + KL +R +A Sbjct: 131 PDAPLAAEGLTRREREVLALLAEGLANKAIAARLGISEHTAKFHVNAILGKLGVESRAEA 190 Query: 225 IAKAIRFGYI 234 I +A R G + Sbjct: 191 IVRAARLGLV 200 >gi|94968718|ref|YP_590766.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550768|gb|ABF40692.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 208 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 7/149 (4%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVII 147 S + ++ A + + + + ++I Sbjct: 57 DCAMPGMSGMDATKQIRTQWPDIAVLMLTMHSEDTWVRLALEAGANGYILKSAIDLDLIQ 116 Query: 148 EAHGAC--YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 V+ +E + + + LT RE LQL G +++EIA L LSV+TV Sbjct: 117 AVRRVANGETVLDPKVEKPTLKGNKSMGLTNRELEILQLIVSGKSNKEIASDLSLSVNTV 176 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + + L N + + AI+ G + Sbjct: 177 SVHRANIMEGLGIHNTAELVVYAIKNGLV 205 >gi|49078596|gb|AAT49800.1| PA4074 [synthetic construct] Length = 223 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 14/219 (6%) Query: 16 ELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +L PR + + A Y I+ + +L D Sbjct: 8 DLGPRCMQAFTQVVPASLCVFYRID-----EDCRAHDFQLLRMPAGMHRDYLRH-YRDYD 61 Query: 75 DFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 H + P++ L + + Sbjct: 62 PLQPRHCLASASPVVPLRQGIARQPAEDSALYQGFLRRHGICDVVEVLAHAHQRPVAALS 121 Query: 134 FTSE-----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + F + HG ++ + + LT RE L DG Sbjct: 122 LLRDARLGAFSDQELRQLRALHGL-MELAAQACATPTASAERLQGLTPREREIALLLRDG 180 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +++ +A+ LGL + TV +L + K A +R + + + Sbjct: 181 VSNKCLAQCLGLGLPTVKTHLLNLFRKTGARSRTELVKR 219 >gi|152965166|ref|YP_001360950.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359683|gb|ABS02686.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 1/160 (0%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L I+ + + V AG + + V Sbjct: 63 PVLD-GLEATRRILAAGLDPAPRVLVLTTFDVDDYVFSALQAGASGFLLKDATPEVLVDS 121 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + +A +LT RE L G +++EI Sbjct: 122 VRAVARGDSLLAPGITRRLIEHFVSTRRRAVDVPAALADLTPREREVLVCIARGLSNQEI 181 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ T ++ KL +R+QA+ G + Sbjct: 182 AAELFIAEQTTKTHVSRVLTKLGLRDRVQAVVLGYEIGLV 221 >gi|218662807|ref|ZP_03518737.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 102 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + E I + ++ E + LT+RE+ ++ +G TS Sbjct: 1 MLSGEREEPDQGEIADLLLDAMRIFDKLYE-EILTQEMSGRLTQRESEIVKWTSEGKTSA 59 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 60 EIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 101 >gi|18092665|gb|AAL59394.1| putative regulatory protein [Burkholderia cenocepacia] Length = 302 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 70/245 (28%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + A + L Sbjct: 61 TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFARERVESLYLHEAFT--PATYRGDYV 118 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQ----------SIQEETVIESSGQLSVRLEGGLLPFA 116 D +PI+W + V ++ ++ + Sbjct: 119 RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDDDSCVSPAALDGFLQTMQDDGMCS 178 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 179 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 237 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 238 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 297 Query: 230 RFGYI 234 + I Sbjct: 298 KLELI 302 >gi|77463659|ref|YP_353163.1| two component transcriptional regulator, LuxR [Rhodobacter sphaeroides 2.4.1] gi|221639502|ref|YP_002525764.1| LuxR family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558515|ref|ZP_08412837.1| Two component transcriptional regulator, LuxR family protein [Rhodobacter sphaeroides WS8N] gi|77388077|gb|ABA79262.1| two component transcriptional regulator, LuxR [Rhodobacter sphaeroides 2.4.1] gi|221160283|gb|ACM01263.1| Two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides KD131] gi|332276227|gb|EGJ21542.1| Two component transcriptional regulator, LuxR family protein [Rhodobacter sphaeroides WS8N] Length = 210 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAE 196 + + I A + L ++++ + LTE+E + +G ++EIA Sbjct: 113 PVRSLGNAIRFMHAGEHYLPLELARDRRQAPDSSGGRLTEKEMLVMSYLAEGRQNKEIAH 172 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L+ T+ ++ S KL A NR QA+ A G I Sbjct: 173 GLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210 >gi|306823235|ref|ZP_07456611.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|309801640|ref|ZP_07695761.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553867|gb|EFM41778.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|308221772|gb|EFO78063.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA++L +S+ TV ++ K++A +R+QA+ A Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFA 242 Query: 229 IRFGYI 234 + Sbjct: 243 YENHLV 248 >gi|218549608|ref|YP_002383399.1| transcriptional regulator NarP [Escherichia fergusonii ATCC 35469] gi|218357149|emb|CAQ89784.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia fergusonii ATCC 35469] gi|325498005|gb|EGC95864.1| transcriptional regulator NarP [Escherichia fergusonii ECD227] Length = 216 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 14/141 (9%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I E ++ A Sbjct: 73 LNALRRDGVTAQIIIITVSDSASDIYALIDAGADGYLLKDSEPESLLAAIQKGANGGKVF 132 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++++L ++ S LTERE L G ++++IA L +S TV ++ Sbjct: 133 SARVSEYLRERERFGSKDDPFSTLTERELDVLHELAKGLSNKQIASALNISEQTVKVHIR 192 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 + KL+ +R+ A ++ Sbjct: 193 NLLRKLNVRSRVAATILFLQH 213 >gi|70732431|ref|YP_262193.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68346730|gb|AAY94336.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 911 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 5/145 (3%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 ++ + + + + L G++ L V Sbjct: 771 AALLLAAGRGPQARQDLAQALEAGVGGAMQPFMALLHGHPGWM-----REQLQQGVSTAL 825 Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 A + + ++ ++ +L+ RE S LQL G +++EI+E+L +S+HTV + Sbjct: 826 TQALLERLPAASREPQEIAAHNESLSSRELSVLQLIAQGCSNQEISERLFISLHTVKTHA 885 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL R QA+A+A G + Sbjct: 886 SHINSKLGVERRTQAVARAQELGLL 910 >gi|328463247|gb|EGF34958.1| LuxR family two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 201 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ + LTERE + L G +S++IA L LS TV YL + KL NRI+AI Sbjct: 135 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 194 Query: 228 AIRFGYI 234 A R ++ Sbjct: 195 AKRNKWL 201 >gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 231 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 78/228 (34%), Gaps = 14/228 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALD---FPRRQQLICELHNYDLDSGDIPNILIE 70 + + ++ ++ F + ++A + ++ + + + D L + Sbjct: 8 VDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDVMMPQVDGYQFLKQ 67 Query: 71 TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D LP+I+ + + + + + L P IA L Sbjct: 68 LRDDP-----RFASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLLEK 122 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQLA 185 + E E+ AH +++ + + + A +LT RE S L L Sbjct: 123 RVTQTTVVGEDSE-NIEIAKLAHEIAKIKDLLSPKIGISQTPPPFAIDLTPREQSVLNLV 181 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA KL SV V Y+ K +R + + A+ G Sbjct: 182 AQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|317488844|ref|ZP_07947374.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911918|gb|EFV33497.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 228 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 41/100 (41%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + L ++ R LT+RE L L G+T++EI Sbjct: 124 AQGDALIEPSITRRLIETFVAARPASLGGAAAVAAGLRTLTDREREILALVARGFTNDEI 183 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV +L KLDA +R Q + +A G + Sbjct: 184 GSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGGLV 223 >gi|283455737|ref|YP_003360301.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|283102371|gb|ADB09477.1| Two-component response regulator [Bifidobacterium dentium Bd1] Length = 251 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA++L +S+ TV ++ K++A +R+QA+ A Sbjct: 186 PELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFA 245 Query: 229 IRFGYI 234 + Sbjct: 246 YENHLV 251 >gi|260578669|ref|ZP_05846577.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603166|gb|EEW16435.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 200 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E + +A + + D + + L+ERET Q +G +S IA+ Sbjct: 104 DTPPEELADAIRRVHAGLRVIDPTLAQESLLTPDNPLSERETEVCQQLFEGKSSPAIAKA 163 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV ++ S K A NR +A A G+I Sbjct: 164 LHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200 >gi|256391148|ref|YP_003112712.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357374|gb|ACU70871.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + + S+ LT RE + L G ++EEIA +L ++ T Sbjct: 133 AATRALIARFLAQPSDTAPTVSAPLDALTARELEVVTLVATGLSNEEIAGQLFVTPLTAK 192 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL A +R Q + A G + Sbjct: 193 THVNRAMTKLGARDRAQVVVIAYESGLV 220 >gi|194291367|ref|YP_002007274.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG 19424] gi|193225271|emb|CAQ71213.1| Putative Transcriptional Regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 918 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 6/146 (4%) Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLANEVIIEA 149 + T + + + G + + + L + + Sbjct: 774 QRTGDGAHALVVMGEALRFGAAEGF-VRIFADEGDDVRRLVADACARQAASLPAPYVEKL 832 Query: 150 HGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 AC Q + + A LT +E L L +GY++ +AE+L +S TV + Sbjct: 833 LQACGQAAAEPSGAGRPAPPALVEPLTPKEQKVLHLLAEGYSNVAMAERLFVSETTVRTH 892 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L + + KL A NR QA+A A + G + Sbjct: 893 LRNISAKLHASNRTQAVAIARQLGLL 918 >gi|16766424|ref|NP_462039.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|168242933|ref|ZP_02667865.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447341|ref|YP_002047114.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|16421677|gb|AAL21998.1| putative response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194405645|gb|ACF65864.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337769|gb|EDZ24533.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261248254|emb|CBG26091.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995294|gb|ACY90179.1| putative response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159678|emb|CBW19197.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914146|dbj|BAJ38120.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225798|gb|EFX50852.1| Putative response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131480|gb|ADX18910.1| putative response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989989|gb|AEF08972.1| putative response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 227 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 18 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + ++ + + I +R G + + Sbjct: 70 SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + LT +E + + +G +++ IA +L + Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLESILTAKEREIVGMVCEGASNKLIARQLNI 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215 >gi|288916721|ref|ZP_06411095.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351795|gb|EFC85998.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 237 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 2/103 (1%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191 ++ + A +++ F + + LT RE LQL G ++ Sbjct: 124 LVGAVRLVRLGDALLAPAITRRLVERFARTDRGTTLHRELSTLTPREVEVLQLLATGLSN 183 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A +L LS TV ++ KL +R QA+ A G + Sbjct: 184 AELAARLVLSEATVKTHVARIMAKLGLRDRAQAVVVAYETGLV 226 >gi|262376171|ref|ZP_06069401.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] gi|262308772|gb|EEY89905.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] Length = 229 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + ++ LT+RE L L G ++ EIAE+L +S +TV +++ KL R +A+ Sbjct: 161 RPAADQETLTQREQEILSLVAQGLSNREIAEQLCVSRYTVESHIKHIYRKLSVSKRTKAV 220 Query: 226 AKAIRFGYI 234 + A G + Sbjct: 221 STARHLGIL 229 >gi|229552033|ref|ZP_04440758.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314610|gb|EEN80583.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 203 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ + LTERE + L G +S++IA L LS TV YL + KL NRI+AI Sbjct: 136 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 195 Query: 228 AIRFGYI 234 A R ++ Sbjct: 196 AKRNKWL 202 >gi|188994767|ref|YP_001929019.1| probable DNA-binding response regulator LuxR family [Porphyromonas gingivalis ATCC 33277] gi|148524521|dbj|BAF63428.1| fimR [Porphyromonas gingivalis ATCC 33277] gi|188594447|dbj|BAG33422.1| probable DNA-binding response regulator LuxR family [Porphyromonas gingivalis ATCC 33277] Length = 227 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +Q DGY+++E AEK+ LS TV + + KL N + I A++ G Sbjct: 163 ELTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFSNAAELIRYAVKSG 222 Query: 233 YI 234 + Sbjct: 223 LV 224 >gi|17230043|ref|NP_486591.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75906706|ref|YP_321002.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17131643|dbj|BAB74250.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75700431|gb|ABA20107.1| transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 87 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L G T++EIA KL +S TV+ ++ + K NR+ + A+++G Sbjct: 12 LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILDKTRTENRVALVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|300788348|ref|YP_003768639.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797862|gb|ADJ48237.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 223 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L G ++ EIAE+L LS TV ++G KL+ +R+QA+ A Sbjct: 158 ERLTERELEVLTKLARGLSNAEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDI 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|269138467|ref|YP_003295167.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|267984127|gb|ACY83956.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|304558493|gb|ADM41157.1| Nitrate/nitrite response regulator protein [Edwardsiella tarda FL6-60] Length = 215 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + I V ++ E ++ + Sbjct: 78 LRNEGIDARIIILTVSDARSDVYALVDAGADGYLLKDSEPEALLAQIRQAAEGRSVFSES 137 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L + + +LTERE LQ G ++++IA +L +S TV ++ + KL Sbjct: 138 VLAYLSTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNLLRKL 197 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 198 NVRSRVAATVL 208 >gi|260362480|ref|ZP_05775413.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus K5030] gi|260894575|ref|ZP_05903071.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus Peru-466] gi|308094902|ref|ZP_05892254.2| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AN-5034] gi|308086485|gb|EFO36180.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus Peru-466] gi|308092124|gb|EFO41819.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AN-5034] gi|308113367|gb|EFO50907.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus K5030] Length = 210 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + V ++ + + ++E +Q Sbjct: 71 LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAYSQE 130 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L +LT+RET L+ G+ +++IA++L +S TV ++ S KL Sbjct: 131 VAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKL 190 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 191 QVPSRTAATVLYLER 205 >gi|163743111|ref|ZP_02150493.1| Possible LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161383528|gb|EDQ07915.1| Possible LuxR family protein [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 11/184 (5%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + Y + D + D + S W ++ + Sbjct: 33 VFMKSTYSREWIDHYLVQRYFDLDPTIHFGKSATGFTTWGDLRRHYPTSNK---FFDDAA 89 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 G + + + + + + +A + R S Sbjct: 90 RFGLDCGNTLSIHV-DGQVSILSCSGPKWGDTERRLAKAALYSIHAV-------HHRESC 141 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + E+ ++L GY EIAE+LG+ + TV +A ++A + Q I+ I+ Sbjct: 142 RYTIKEKSKDVIRLMCTGYQDREIAERLGVKLETVRQRRQTAMQAVEATSTAQLISLVIK 201 Query: 231 FGYI 234 +G I Sbjct: 202 YGLI 205 >gi|311899603|dbj|BAJ32011.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 238 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 40/96 (41%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + +++ A LT RE L+LA +G+ +EEIA Sbjct: 129 DPAVTRDLLGRLLAAPEPPPGPSAPPPGSVPGPLAALTVREREVLRLAAEGHPNEEIAAL 188 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L+ TV ++ KL A +R QA+A A R G Sbjct: 189 LHLAESTVKTHVKRILGKLGARDRSQAVAAAYRHGL 224 >gi|299069373|emb|CBJ40639.1| Nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum CMR15] Length = 221 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 43/126 (34%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + + G + +++ + + Sbjct: 93 AALRDGARGYLVKNIEADTLVAGVRRAAAGEPVISESMTAKLVAHFRAPEKAAPAAPAAA 152 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +A LT RE ++ G +++EIA L ++ TV ++ + KL+ +R+Q Sbjct: 153 SVSADRLTPRERDIVRGLARGESNKEIARALDVAESTVKIHVQNILKKLNLTSRVQVAVY 212 Query: 228 AIRFGY 233 A+ G Sbjct: 213 AVEHGL 218 >gi|68535964|ref|YP_250669.1| two-component system response regulator TcsR2 [Corynebacterium jeikeium K411] gi|68263563|emb|CAI37051.1| two-component system response regulator TcsR2 [Corynebacterium jeikeium K411] Length = 200 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E + +A + + D + + L+ERET Q +G +S IA+ Sbjct: 104 DTPPEELADAIRRVHAGLRVIDPTLAQESLLTPDNPLSERETEVCQQLFEGKSSPAIAKA 163 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV ++ S K A NR +A A G+I Sbjct: 164 LHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200 >gi|313820373|gb|EFS58087.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313822823|gb|EFS60537.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|314925260|gb|EFS89091.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] Length = 210 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMARMRSPRTSLTARELDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVSSRSAAVAKARDIGFI 209 >gi|271962774|ref|YP_003336970.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505949|gb|ACZ84227.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 212 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 17/160 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138 + ++ R+ G +A V VI Sbjct: 53 LDVHMPGGGGQEVLRRVLGSGSSVRFLALSVSDAAEDVIGVIRGGARGYVTKTISGRELT 112 Query: 139 ----LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + A + + +LT+RE L+L GY +EI Sbjct: 113 DAIRRVADGDAVFSPRLAGFVLDAFASSEAPPIDPELDSLTQREREVLRLIARGYAYKEI 172 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L +SV TV ++ S KL NR + A + Sbjct: 173 AKELFISVKTVETHVSSVLRKLQLSNRHELSRWATARRLV 212 >gi|182438916|ref|YP_001826635.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779572|ref|ZP_08238837.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178467432|dbj|BAG21952.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659905|gb|EGE44751.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 229 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 2/197 (1%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 I+ + +Q + N D + + E G + + ++ + Sbjct: 28 IDVVGEAADGRQGVDVSRNQHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLT 87 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 +G V + L + A + Sbjct: 88 TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQ 145 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 ++ LT RE+ L+L G +++EIA +L L+ TV ++G KLD Sbjct: 146 RPSGATRGGQALRRHGLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLD 205 Query: 218 AVNRIQAIAKAIRFGYI 234 +R QA+ A G + Sbjct: 206 LRDRAQAVIFAYESGLV 222 >gi|149376825|ref|ZP_01894582.1| putative transcriptional regulator [Marinobacter algicola DG893] gi|149358946|gb|EDM47413.1| putative transcriptional regulator [Marinobacter algicola DG893] Length = 898 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 43/71 (60%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+++S A +++RE L+L G ++++IA++L +S+HTV + KL+ +R Q Sbjct: 828 MKEQASLAEPISDREQGVLELIAQGLSNQDIADRLHISLHTVKTHARRINAKLEVKSRTQ 887 Query: 224 AIAKAIRFGYI 234 AI +A G + Sbjct: 888 AIVRARELGLL 898 >gi|333025294|ref|ZP_08453358.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332745146|gb|EGJ75587.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 205 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE ++L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 132 PELDRLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLA 191 Query: 229 IRFGYI 234 G + Sbjct: 192 YETGIV 197 >gi|297529073|ref|YP_003670348.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252325|gb|ADI25771.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 500 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 39/71 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +L+ RE L+L +G ++ E A +L LS +TV Y+ + K++A NR + Sbjct: 430 RSDLVQPMPHLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTE 489 Query: 224 AIAKAIRFGYI 234 AI KAIR G I Sbjct: 490 AIVKAIRDGII 500 >gi|188585327|ref|YP_001916872.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350014|gb|ACB84284.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 213 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 E I++A +V+ R + LT RE L L G T+ EI E+L Sbjct: 118 AAEGEQIMDA-KTTEKVLEYMRNKNPNRENPTDILTNREMDILDLVAKGKTNSEIGEELH 176 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LS TV L KLD NR QA A Sbjct: 177 LSEKTVRNQLSRILNKLDLNNRTQAAAY 204 >gi|260905221|ref|ZP_05913543.1| two component system response regulator [Brevibacterium linens BL2] Length = 260 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT+RE L L G T+ EIA L ++V TV ++ KLD +R QA+ Sbjct: 188 AEALPDLTDREREILVLVARGQTNTEIAATLFIAVQTVKTHVSRILYKLDIRDRAQAVIA 247 Query: 228 AIRFGYI 234 A G + Sbjct: 248 AYESGLV 254 >gi|315127425|ref|YP_004069428.1| regulator in two-component regulatory system; LuxR [Pseudoalteromonas sp. SM9913] gi|315015939|gb|ADT69277.1| regulator in two-component regulatory system; LuxR [Pseudoalteromonas sp. SM9913] Length = 216 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ ++ +LT ++ LQ +G +++IA +L +S TV A++ + KL NR Q Sbjct: 141 DREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQ 200 Query: 224 AIAKAIRFGY 233 A+ A + Sbjct: 201 AVLIAAKLQL 210 >gi|313140461|ref|ZP_07802654.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313132971|gb|EFR50588.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 248 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L G +++EIA+KL +S+ T ++ K++A +R+QA+ A Sbjct: 183 PELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFA 242 Query: 229 IRFGYI 234 G + Sbjct: 243 YDNGLV 248 >gi|311064578|ref|YP_003971303.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310866897|gb|ADP36266.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 248 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L G +++EIA+KL +S+ T ++ K++A +R+QA+ A Sbjct: 183 PELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFA 242 Query: 229 IRFGYI 234 G + Sbjct: 243 YDNGLV 248 >gi|238792074|ref|ZP_04635710.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] gi|238728705|gb|EEQ20223.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] Length = 202 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + I V +I E+++E Sbjct: 65 LRHDGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRRAAHGENVFSNE 124 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L + + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 125 VAQYLSSRHEEINPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 184 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 185 NVRSRVAATIM 195 >gi|254390921|ref|ZP_05006131.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704618|gb|EDY50430.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 242 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT RE +L G + IA ++ +S TV ++ + KL +R Sbjct: 164 AAGTGPTGVPDGLTPREREVWRLIAAGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDR 223 Query: 222 IQAIAKAIRFGYI 234 QA+ A G + Sbjct: 224 AQAVIAAYEAGLV 236 >gi|315505229|ref|YP_004084116.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411848|gb|ADU09965.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 212 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G T L + + LT RET L L Sbjct: 102 AGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALV 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ I +L L+ TV ++L KL +R A+A A G I Sbjct: 162 ADGLSNHSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210 >gi|111220997|ref|YP_711791.1| putative regulatory protein [Frankia alni ACN14a] gi|111148529|emb|CAJ60200.1| Putative regulatory protein [Frankia alni ACN14a] Length = 273 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 12/230 (5%) Query: 9 KKSSSLQELSP-RLHLIQNRIKARNFALYTINSALDF--PRRQQLICELHNYDLDSGDIP 65 +++SSL L + + R+ A + +S R + Sbjct: 35 ERASSLASFRELALDGMARHLGYRHSAFFLGSSIETAFQDARPTGRGLALRLAGPYMERY 94 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV--RLEGGLLPFAGIAFPVR 123 L + L L ++ + V E R A + + Sbjct: 95 RELEALSNPESLRSVRERGL----ATLDDLGVPERPEVRMRLERFLRAHGIHAKLLVRLF 150 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180 + + + + + L + + A L+ RE Sbjct: 151 GPSNVGALISLLDSRPGAFGPRDRAVGAVLGRHLGNLLRFYIRTDPGPSVAGRLSARERD 210 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++L +G ++ ++AE L +S+ TV +L A V NR Q R Sbjct: 211 VVRLVAEGRSNRQVAEALCISIDTVKHHLTHALVATGCSNRTQLAIAWQR 260 >gi|285808415|gb|ADC35942.1| two component transcriptional regulator LuxR family [uncultured bacterium 70] Length = 210 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 33/65 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL G +++EIAE+LGLSV+TV + + L + + AI Sbjct: 143 RTHGLTPRELEVLQLICSGMSNKEIAEELGLSVNTVAVHRANIMNALGLHKTAELVVYAI 202 Query: 230 RFGYI 234 G + Sbjct: 203 SNGLV 207 >gi|221209585|ref|ZP_03582566.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] gi|221170273|gb|EEE02739.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] Length = 298 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 67/244 (27%), Gaps = 18/244 (7%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + A + L Sbjct: 57 TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PSTYRGDYV 114 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL----------SVRLEGGLLPFA 116 D +PI+W Q + ++ + Sbjct: 115 RHNHHDVDPRTLGARVCNMPIVWDLQQLRRDHQPRDDDASDAPAALDGFLQTMQDDGMCS 174 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSA 170 GI + + + + ++ FT+ + G + R A Sbjct: 175 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATVEQALSIGLSVHKFASPQLIATSRERA 234 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E L +G + +EI +L S H V+ +L + NR+Q + Sbjct: 235 VNGLTPFEQELLIGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRVQLTYLTSK 294 Query: 231 FGYI 234 I Sbjct: 295 LELI 298 >gi|170077282|ref|YP_001733920.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002] gi|169884951|gb|ACA98664.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002] Length = 363 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L++RE L L G +IA++L +S TV +L KL A NR QAI +A + Sbjct: 301 ESLSQRERQVLALLTKGLRDRDIAQQLHISESTVKFHLNRTLSKLQAKNRYQAIYQATKQ 360 Query: 232 GYI 234 G I Sbjct: 361 GLI 363 >gi|78061780|ref|YP_371688.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77969665|gb|ABB11044.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 246 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 61/233 (26%), Gaps = 24/233 (10%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72 + L + A FA + + + EL Sbjct: 12 AADWQRALRACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRM 68 Query: 73 GDDFL-FHFNSGLLPII----------------WQS-IQEETVIESSGQLSVRLEGGLLP 114 D +G ++ W +Q V + + Sbjct: 69 LDPLHPSRCAAGERAVVTLASQLPDERRDASAYWTRFLQRHDVADVVEIWLRDAGRTVGA 128 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAAR 172 F+ + F F + + ++ L + R S Sbjct: 129 FSLLRFGAGDTGGGAAGNSTAGRFAPGEIDALARLQPVAEAALSPLLRVRSGIHRISCEE 188 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++EIA L L TV +L KL NR + + Sbjct: 189 RLTYREEQIARLVRDGRSNKEIARDLALGQPTVKTHLMRMYRKLGVSNRTELV 241 >gi|258539446|ref|YP_003173945.1| LuxR family two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151122|emb|CAR90094.1| Two-component response regulator, LuxR family [Lactobacillus rhamnosus Lc 705] Length = 202 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ + LTERE + L G +S++IA L LS TV YL + KL NRI+AI Sbjct: 135 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 194 Query: 228 AIRFGYI 234 A R ++ Sbjct: 195 AKRNKWL 201 >gi|196229558|ref|ZP_03128423.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226790|gb|EDY21295.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 7/149 (4%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148 + + L + F G + A E ++ Sbjct: 59 DLRLPGANGTAATADLRREWPDARVLMFTTFDGEEDIYRAMQAGARGYLLKSAAREELLS 118 Query: 149 AHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A A +R + AA ++++RE LQL G ++EIA LG+S TV Sbjct: 119 AIRAVAAGERHLSAALAQRLAGRVAAPDVSDREREVLQLIARGKANKEIAAALGISEETV 178 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + VK+ +R QA ++ IR G I Sbjct: 179 KRHASNLFVKMGVADRAQATSEGIRRGLI 207 >gi|134103124|ref|YP_001108785.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003933|ref|ZP_06561906.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915747|emb|CAM05860.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 223 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 49/162 (30%), Gaps = 19/162 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + ++ ++ G +A V VI ++ + Sbjct: 62 LDVHMPDGGGAEVLRQVRGKQPDVVFLALSVSDAAEDVIAVIRGGARGYVTKTISGRELA 121 Query: 148 EAH------------GACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSE 192 +A V+ F E LT RE L+L GY + Sbjct: 122 DAVCRVAAGDPVFSPRLAGFVLDAFAEGPNSAPVGDPELDLLTPRERDVLRLLARGYAYK 181 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L +SV TV ++ S K NR + A + Sbjct: 182 EIASELFISVKTVETHVSSVLRKTQLSNRYELSRWATDRRLV 223 >gi|84496768|ref|ZP_00995622.1| putative respose regulatory protein [Janibacter sp. HTCC2649] gi|84383536|gb|EAP99417.1| putative respose regulatory protein [Janibacter sp. HTCC2649] Length = 217 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 62/170 (36%), Gaps = 26/170 (15%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 S + L G G+ VR +I T+ +E Sbjct: 48 DEALALVGSTSPDVVLSDLRLGAGLDGVGVTRAVRATHPDVAVLIITTFDHDADIVRAVE 107 Query: 149 AHGACYQVITDFL------------------------ELFKKRSSAARNLTERETSCLQL 184 A GA ++ D L + + R L+ERE L L Sbjct: 108 A-GAAGYLLKDALPDEIIAAIRAAAVGETVLSAQLTQRVVETMRVGQRPLSEREREVLVL 166 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G +++EIA++L +S TV +L KL+A +R A+A A R G I Sbjct: 167 VGEGLSNDEIAKQLFISRATVKTHLRHLFGKLEADSRTGAVATARRLGLI 216 >gi|304409402|ref|ZP_07391022.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307303760|ref|ZP_07583513.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304351920|gb|EFM16318.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306912658|gb|EFN43081.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 216 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%) Query: 162 ELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ + + + + L+ERE L G++++EIA + L+ TV ++ + K Sbjct: 138 QMSEPKPAPSVGVTRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTK 197 Query: 216 LDAVNRIQAIAKAIRFGYI 234 LD +R QA+ K ++ I Sbjct: 198 LDCRDRTQAVLKGLQLALI 216 >gi|269962779|ref|ZP_06177120.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832469|gb|EEZ86587.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 218 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Query: 150 HGACYQVITDFLELFKKRSS-----AARN--LTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + +++ L +K + S A LT RE LQ+ DG ++ EIA+ L +S Sbjct: 129 NWLSRRLLEQLLTYYKGKESTYSIEPAEEVELTRREVQVLQMLKDGGSNMEIADSLFISE 188 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 HT+ ++L + K++ NR QA + A R Sbjct: 189 HTIKSHLYNIFRKIEVKNRTQATSWAKRN 217 >gi|291299414|ref|YP_003510692.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568634|gb|ADD41599.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIA 195 ++A + A ++I +F++ + R + +LT RET L+L +G ++ E+A Sbjct: 120 RVVAAGEALLAPTVTRRLIGEFVQSKQPRPVADARLASLTPRETEVLRLVAEGLSNPELA 179 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ KL +R QA+ A G + Sbjct: 180 ARLTVSEETVKTHVSRVLHKLGLRDRTQAVVAAYESGLV 218 >gi|186681434|ref|YP_001864630.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463886|gb|ACC79687.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 239 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 44/80 (55%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ + ++ ++S + LT RE L+L G + EIA++L L+V TV ++ Sbjct: 159 RVLIEGIDPDVEKSIVSYPLTHREMDVLELIVAGCDNAEIAKRLYLTVGTVKTHVRGILN 218 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R QA +A+R G + Sbjct: 219 KLCVADRTQAAVRALRAGLV 238 >gi|326776667|ref|ZP_08235932.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326657000|gb|EGE41846.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ + LA+ V + A G ++I +F + Sbjct: 99 LRAGASGFLLKDASADELAHAVRVVAAGDALLSPNITKRLIVEFSRTAGAPRPPLKARVK 158 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EI+ +L ++ TV ++G VKL +R QA A G Sbjct: 159 ELTERETEVLTLIAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|294101416|ref|YP_003553274.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293616396|gb|ADE56550.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 211 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERE 178 L G+++ TS ++I + ++ + R +L+ RE Sbjct: 93 ASLRAGARGFILKTST----PQDLIRAIQTVVQGGLYLDSEVATVVGDRELVPESLSARE 148 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LA G +S+E+A +L +S TV +L S KL A N+ +A+ A+++G + Sbjct: 149 REVLVLASKGLSSKEVAAELFISERTVQTHLASIYDKLGARNKTEALLLALKYGVV 204 >gi|269836639|ref|YP_003318867.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785902|gb|ACZ38045.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 237 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ +F + + + LTERE L+L G +++EIA +L L+ TV L Sbjct: 150 LATKLLNEFRRISEFREEETVAGLTEREIQLLRLVASGMSNKEIAAELSLAESTVKNRLS 209 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A+ G I Sbjct: 210 LLFEKLDVKDRTQAAIYALSHGLI 233 >gi|269957384|ref|YP_003327173.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306065|gb|ACZ31615.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 42/96 (43%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + ++ + H +A LT+RE L+L G ++ EIA L Sbjct: 135 IAPSSTRRLLEHLVTALPTPAPDTPPSPAHAALATLTDREREVLELMARGRSNTEIAADL 194 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV ++G KLDA +R+QA+ A G + Sbjct: 195 FVAEATVKTHVGRILAKLDARDRVQAVVLAYETGVV 230 >gi|269794179|ref|YP_003313634.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096364|gb|ACZ20800.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 236 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ + + + L + ++SA +LTERE L L G ++ Sbjct: 132 VHSGDAVIAPSTTRRLLDRLVTTLPEEQL-VDSGQASAVDSLTEREREVLVLMARGRANQ 190 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L ++ T+ ++G KL A +R+QA+ A G + Sbjct: 191 EIASDLFVAEATIKTHVGRILSKLGARDRVQAVVTAYETGLV 232 >gi|253575646|ref|ZP_04852982.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14] gi|251844984|gb|EES72996.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14] Length = 74 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T+ +IA +L +S TV ++ + KL+ R QA+ + I+ G Sbjct: 12 LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRAQAVVELIKLG 70 >gi|311740351|ref|ZP_07714180.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304535|gb|EFQ80609.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 223 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + +LT RE LQL G ++ +I + L LS TV ++L KL +R Sbjct: 151 RLMTRVRTPRTSLTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSR 210 Query: 222 IQAIAKAIRFGYI 234 A+A A G + Sbjct: 211 TSAVAAAREQGVL 223 >gi|16761174|ref|NP_456791.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141132|ref|NP_804474.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412856|ref|YP_149931.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168229605|ref|ZP_02654663.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236420|ref|ZP_02661478.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168818030|ref|ZP_02830030.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194471476|ref|ZP_03077460.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736026|ref|YP_002115321.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250575|ref|YP_002147204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361787|ref|YP_002141423.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213028722|ref|ZP_03343169.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213051724|ref|ZP_03344602.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418242|ref|ZP_03351308.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426294|ref|ZP_03359044.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213622209|ref|ZP_03374992.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649802|ref|ZP_03379855.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289812587|ref|ZP_06543216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824610|ref|ZP_06544153.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298773|pir||AD0787 nitrate/nitrite response regulator protein NarP STY2472 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503473|emb|CAD07478.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhi] gi|29136758|gb|AAO68323.1| nitrate/nitrite response regulator protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127113|gb|AAV76619.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194457840|gb|EDX46679.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711528|gb|ACF90749.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093263|emb|CAR58709.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214278|gb|ACH51675.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290466|gb|EDY29821.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205335871|gb|EDZ22635.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344893|gb|EDZ31657.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|322615257|gb|EFY12179.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617847|gb|EFY14743.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624558|gb|EFY21389.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626991|gb|EFY23787.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634176|gb|EFY30912.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635631|gb|EFY32341.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640233|gb|EFY36897.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646344|gb|EFY42856.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649311|gb|EFY45747.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656431|gb|EFY52720.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661159|gb|EFY57386.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665703|gb|EFY61887.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667229|gb|EFY63396.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671234|gb|EFY67362.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675125|gb|EFY71202.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680733|gb|EFY76768.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686908|gb|EFY82885.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192673|gb|EFZ77900.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198895|gb|EFZ83994.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205094|gb|EFZ90072.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208137|gb|EFZ93081.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211120|gb|EFZ95970.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215837|gb|EGA00580.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221856|gb|EGA06256.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223671|gb|EGA07980.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231283|gb|EGA15398.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233716|gb|EGA17808.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237788|gb|EGA21848.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245769|gb|EGA29763.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246491|gb|EGA30470.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252610|gb|EGA36449.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255334|gb|EGA39107.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259569|gb|EGA43204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266066|gb|EGA49559.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272760|gb|EGA56164.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 215 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|84496167|ref|ZP_00995021.1| putative two-component system regulator [Janibacter sp. HTCC2649] gi|84382935|gb|EAP98816.1| putative two-component system regulator [Janibacter sp. HTCC2649] Length = 232 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 17/224 (7%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L ++ + + + R+ D + L G Sbjct: 13 ADDHPLWLGALERDLAQAGLDVVATAADGPSTVRRTRAT-----RPDVLVLDLNLPGMRG 67 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D+ ++ ++ +SG+ L G V+ Sbjct: 68 DEVCRALGDLETRVL--------ILSASGEQLDVLAAIKAGATGYLVKSASSEDIVAAVL 119 Query: 134 FTSEFLMLANEVIIEAHGACYQVIT----DFLELFKKRSSAARNLTERETSCLQLAGDGY 189 T+ + + ++ + + + + LT+RET L+L G Sbjct: 120 ATARGEAVFTSGLAGLVLGEFRRMAADDGEAVAAPQTADRPIPELTDRETEVLRLVATGM 179 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + +EIA +L LS TV ++ + KL NR++ + A+ G Sbjct: 180 SYKEIAAELFLSHRTVQNHVQNTLGKLHLHNRVELVRFALARGL 223 >gi|332974494|gb|EGK11416.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 224 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 37/72 (51%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + K + +LT RE L+L G T+++IA+ L + + TV ++ + KL +R Sbjct: 137 RVRKPQPLPHEDLTIREGEVLRLLGQAKTNQQIADILMIGIKTVKTHVSNILSKLGLEDR 196 Query: 222 IQAIAKAIRFGY 233 QA A++ G Sbjct: 197 TQAAVYAVKHGL 208 >gi|268316568|ref|YP_003290287.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262334102|gb|ACY47899.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 211 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 151 GACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 V LELF+ + + A + LT RE L L G ++ EIAE+L LS+ TV Sbjct: 124 WMSAGVARRALELFRHQLAPAAALQQLTPREQEVLHLLARGLSNAEIAERLYLSIETVRT 183 Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231 ++ KL A NR +A+++ ++ Sbjct: 184 HIRHIYRKLQARNRAEAVSRLLQN 207 >gi|220914644|ref|YP_002489953.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861522|gb|ACL41864.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 230 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+ +G ++ EIA + LS TV ++ KL +R+QA+ A G Sbjct: 163 LTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETGL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|126649643|ref|ZP_01721884.1| two-component response regulator [Bacillus sp. B14905] gi|126593968|gb|EAZ87891.1| two-component response regulator [Bacillus sp. B14905] Length = 203 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE+ L L +G T++EIA +L LS TV Y+ + KL+ NRI+AIA+ G Sbjct: 141 PLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKG 200 Query: 233 Y 233 + Sbjct: 201 W 201 >gi|330811658|ref|YP_004356120.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379766|gb|AEA71116.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 849 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEK 197 A + + E +++ + A+ L+ RE L+L G+++++IAE+ Sbjct: 752 RAQQALCELRLRQPELVRWAQSAEQVEPPASAEDTLLSHRELEVLELIAQGHSNQQIAER 811 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L +S+HTV + KL R QA+AKA G Sbjct: 812 LFISLHTVKTHARRIHSKLGVQRRTQAVAKAKVMG 846 >gi|158336971|ref|YP_001518146.1| LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158307212|gb|ABW28829.1| transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 87 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 38/64 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE ++L G +EEI+++L +S TV+ ++ + K D NR+ + A+++ Sbjct: 10 HQLSERELQVIELVASGLKNEEISQRLDISKRTVDNHISNILTKTDTDNRVALVRWALQW 69 Query: 232 GYIC 235 G +C Sbjct: 70 GKVC 73 >gi|116691570|ref|YP_837103.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649570|gb|ABK10210.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] Length = 510 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 89 WQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFTSEFLMLA 142 W I+ + V++ + ++ S+ Sbjct: 329 WSRIEGRLAGDGHVRNVDVQIRTRDGDVRDCVVSADPVAIHGRDCLLVALLDISDRKRTE 388 Query: 143 NEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTS 191 E+ + +A +I + + + A LT RE L G Sbjct: 389 MELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLAD 448 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA +LGL+ +TV ++ + KLD +R +AI A G + Sbjct: 449 KEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|332877914|ref|ZP_08445652.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684209|gb|EGJ57068.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 205 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSA---------ARNLTERETSCLQLAGDGYTSEEI 194 ++ L + L+ RE L L G T++EI Sbjct: 101 SMVRALLQLQQHAHAHGRHLPQNMPRPYMTNTSPGDPNGLSTREIEVLTLIVRGLTNKEI 160 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L +S TV ++ + KL+ + A+ GYI Sbjct: 161 ADRLCISTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGYI 200 >gi|251771224|gb|EES51805.1| two component transcriptional regulator, LuxR family [Leptospirillum ferrodiazotrophum] Length = 219 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + L+ RET L+L +G ++ +IA LG+SV TV A++ S V Sbjct: 140 AHLAIRRILSSPAPETETPLSARETEVLRLLAEGQSNRDIAVALGISVSTVKAHIQSILV 199 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A R A KA R G+I Sbjct: 200 KLSAATRADAAVKAFRKGWI 219 >gi|226366081|ref|YP_002783864.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244571|dbj|BAH54919.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 SS +LT+RE + L +G T+ EI +L LS T ++ +KL A +R Q Sbjct: 146 RPPHSSRLDDLTDREREVMTLIAEGLTNAEIGSRLFLSPATARTHVSRILLKLGARDRTQ 205 Query: 224 AIAKAIRFGYI 234 + A +G + Sbjct: 206 LVVMAYEWGLV 216 >gi|111020952|ref|YP_703924.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110820482|gb|ABG95766.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 207 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V + G +L + A +L+ RE L L Sbjct: 97 AGAAGYLLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTRVRRPATSLSPREIQVLTLV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI ++L LS TV ++L KL +R AIA+A G I Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAIARARELGTI 205 >gi|327330788|gb|EGE72534.1| two-component system response regulator [Propionibacterium acnes HL097PA1] Length = 83 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 12 AEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYE 71 Query: 231 FGYI 234 G I Sbjct: 72 SGLI 75 >gi|255325940|ref|ZP_05367030.1| NarL family two-component response regulator [Rothia mucilaginosa ATCC 25296] gi|255296955|gb|EET76282.1| NarL family two-component response regulator [Rothia mucilaginosa ATCC 25296] Length = 287 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 1/141 (0%) Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-A 152 + + S+ + + +L P + + I H Sbjct: 145 DAVIAPSATRRLLEQMIPVLDSPAPVVPTAPAAESVPATPPAAGSELPKATFIPAGHASP 204 Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L+ RE L L G ++ EI +L LS TV ++ Sbjct: 205 ANSSYQSEPAQDYPHRELIEQLSPREFEVLGLIARGLSNAEITRELVLSEATVKTHVSHV 264 Query: 213 TVKLDAVNRIQAIAKAIRFGY 233 KL A +R+QA+ A G Sbjct: 265 LAKLGARDRVQAVIMAYEAGI 285 >gi|148998533|ref|ZP_01825974.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|168576597|ref|ZP_02722463.1| response regulator [Streptococcus pneumoniae MLV-016] gi|307068610|ref|YP_003877576.1| CheY-like receiver/HTH DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|147755726|gb|EDK62772.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|183577636|gb|EDT98164.1| response regulator [Streptococcus pneumoniae MLV-016] gi|306410147|gb|ADM85574.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pneumoniae AP200] Length = 199 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|159898519|ref|YP_001544766.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891558|gb|ABX04638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 1019 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 41/63 (65%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE + ++L G++++EIA++L ++++T+ +L + KL +R QAIA+A R Sbjct: 954 EPLSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIYSKLAVTSRTQAIARARRL 1013 Query: 232 GYI 234 I Sbjct: 1014 NLI 1016 >gi|312868682|ref|ZP_07728875.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3] gi|311095796|gb|EFQ54047.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3] Length = 210 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L GY++ EI+EKL +S TV A+ + + KL +R++ + AI Sbjct: 148 LSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVELVRYAIHHHL 207 Query: 234 I 234 I Sbjct: 208 I 208 >gi|148990003|ref|ZP_01821278.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182684936|ref|YP_001836683.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|225855491|ref|YP_002737003.1| response regulator [Streptococcus pneumoniae JJA] gi|303254075|ref|ZP_07340190.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|303260376|ref|ZP_07346346.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303262524|ref|ZP_07348466.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303265155|ref|ZP_07351068.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|303265983|ref|ZP_07351878.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303268085|ref|ZP_07353886.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|147924663|gb|EDK75749.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182630270|gb|ACB91218.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|225723110|gb|ACO18963.1| response regulator [Streptococcus pneumoniae JJA] gi|301802678|emb|CBW35444.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598908|gb|EFL65939.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|302636424|gb|EFL66917.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302638542|gb|EFL69007.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302642445|gb|EFL72791.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302644424|gb|EFL74676.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|302645372|gb|EFL75606.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] Length = 199 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|260900449|ref|ZP_05908844.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ4037] gi|308106954|gb|EFO44494.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ4037] gi|328470949|gb|EGF41860.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 10329] Length = 210 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + V ++ + + ++E +Q Sbjct: 71 LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAYSQE 130 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L +LT+RET L+ G+ +++IA++L +S TV ++ S KL Sbjct: 131 VAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKL 190 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 191 QVPSRTAATVLYLER 205 >gi|153837120|ref|ZP_01989787.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ3810] gi|149749537|gb|EDM60283.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ3810] Length = 212 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + V ++ + + ++E +Q Sbjct: 73 LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAYSQE 132 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L +LT+RET L+ G+ +++IA++L +S TV ++ S KL Sbjct: 133 VAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKL 192 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 193 QVPSRTAATVLYLER 207 >gi|28901050|ref|NP_800705.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809563|dbj|BAC62538.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus RIMD 2210633] Length = 208 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + V ++ + + ++E +Q Sbjct: 69 LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAYSQE 128 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L +LT+RET L+ G+ +++IA++L +S TV ++ S KL Sbjct: 129 VAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKL 188 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 189 QVPSRTAATVLYLER 203 >gi|170736431|ref|YP_001777691.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254249144|ref|ZP_04942464.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gi|124875645|gb|EAY65635.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gi|169818619|gb|ACA93201.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 510 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 89 WQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFTSEFLMLA 142 W I+ + V++ + ++ S+ Sbjct: 329 WSRIEGRLAGDGHVRNVDVQIRTRDGDVRDCVVSADPVAIHGRDCLLVALLDISDRKRTE 388 Query: 143 NEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTS 191 E+ + +A +I + + + A LT RE L G Sbjct: 389 MELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLAD 448 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA +LGL+ +TV ++ + KLD +R +AI A G + Sbjct: 449 KEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 233 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 37/99 (37%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E+ E Q+ L +LT RE S L L +G ++EI Sbjct: 133 AGSDSAKLEEIAQEIRELKEQLGQQQNNLTTTPPPIKIDLTPREQSVLDLVAEGLMNKEI 192 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L SV V Y+ K +R + + A++ G Sbjct: 193 AARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 231 >gi|29830210|ref|NP_824844.1| erythropoiesis-stimulating protein [Streptomyces avermitilis MA-4680] gi|15824087|dbj|BAB69254.1| erythropoiesis-stimulating protein homolog [Streptomyces avermitilis] gi|29607321|dbj|BAC71379.1| putative erythropoiesis-stimulating protein [Streptomyces avermitilis MA-4680] Length = 337 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 11/227 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ + ++ R+ + A P+ + D + Sbjct: 116 VERLVGIDDIRSRIEEFTQECGTE-----LLTFATGGPQSEASRQASRPLCEDLAKRGVV 170 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + Y D + + + S+ L P+ Sbjct: 171 MRSIYLDSVH----NDPATVEHLRWLHLHGDQVRTTASLPSRMLLFDRTHAVLPIDPDAS 226 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G ++ ++ + + + + R LT +E + L+L G+ Sbjct: 227 AAGALVLRGAGVIATLGDLFDRVWESAIPFSGGRPQPRDRG--EEELTGQEQAVLRLLGE 284 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T E +A KLG+SV T +L A +R QA +A + G++ Sbjct: 285 GLTDEVVARKLGVSVRTGRRITAELMGRLGARSRFQAGLRAAQLGWL 331 >gi|87306600|ref|ZP_01088747.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87290779|gb|EAQ82666.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G ++ EI L +S+ TV ++ + K+D +R QA A+R G Sbjct: 149 PLTNREMQVLRHLALGLSNREIGRSLTISIETVKEHVQNILRKIDVTDRTQAAVWAVRRG 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|15599269|ref|NP_252763.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116052110|ref|YP_789046.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254236962|ref|ZP_04930285.1| hypothetical protein PACG_02986 [Pseudomonas aeruginosa C3719] gi|296387369|ref|ZP_06876868.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|9950272|gb|AAG07461.1|AE004823_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587331|gb|ABJ13346.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168893|gb|EAZ54404.1| hypothetical protein PACG_02986 [Pseudomonas aeruginosa C3719] Length = 222 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 14/219 (6%) Query: 16 ELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +L PR + + A Y I+ + +L D Sbjct: 8 DLGPRCMQAFTQVVPASLCVFYRID-----EDCRAHDFQLLRMPAGMHRDYLRH-YRDYD 61 Query: 75 DFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 H + P++ L + + Sbjct: 62 PLQPRHCLASASPVVPLRQGIARQPAEDSALYQGFLRRHGICDVVEVLAHAHQRPVAALS 121 Query: 134 FTSE-----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + F + HG ++ + + LT RE L DG Sbjct: 122 LLRDARLGAFSDQELRQLRALHGL-MELAAQACATPTASAERLQGLTPREREIALLLRDG 180 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +++ +A+ LGL + TV +L + K A +R + + + Sbjct: 181 VSNKCLAQCLGLGLPTVKTHLLNLFRKTGARSRTELVKR 219 >gi|303256175|ref|ZP_07342191.1| two component transcriptional regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|331001230|ref|ZP_08324856.1| transcriptional regulator, LuxR family [Parasutterella excrementihominis YIT 11859] gi|302860904|gb|EFL83979.1| two component transcriptional regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|329568957|gb|EGG50753.1| transcriptional regulator, LuxR family [Parasutterella excrementihominis YIT 11859] Length = 228 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 S A V+++A V + + R + A L+ RET L L G + Sbjct: 125 AHGSPMSPTAARVLVDALRRKPTV-KPVVSVAASRPAVANPLSPRETEVLNLLARGMSFA 183 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI+ L +S HTV A++ KL +R +A+ +A + G + Sbjct: 184 EISSVLNISCHTVTAHIKKIYRKLQVHSRGEAVYEAAQLGIL 225 >gi|299534498|ref|ZP_07047831.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298730126|gb|EFI70668.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 203 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE+ L L +G T++EIA +L LS TV Y+ + KL+ NRI+AIA+ G Sbjct: 141 PLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKG 200 Query: 233 Y 233 + Sbjct: 201 W 201 >gi|297197233|ref|ZP_06914630.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717281|gb|EDY61315.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLA 185 + + + A E ++ + L A L+ERE L L Sbjct: 110 RPAELLDAIRTVAAGESLLSPGPTSRLIARFLLAPNTAPKPALGGPSELSERERQVLALV 169 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA+ LGLS T ++ KL A +R Q + A G + Sbjct: 170 ARGLNNAEIADALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 218 >gi|86138888|ref|ZP_01057460.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. MED193] gi|85824535|gb|EAQ44738.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. MED193] Length = 251 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 12/229 (5%) Query: 11 SSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNIL 68 + SL+EL + + + L N+D Sbjct: 13 AKSLEELWHTHVMKMAE-YGFDRLIYGYTRFKTETSLGDPDDFVILTNHDQKYISGFLHQ 71 Query: 69 IETYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 + W + + EE + + + + AG Sbjct: 72 GLYRQAPMVLWALENEGACSWKKIREMLEEGQLSPGSKQVIEFNERMQLNAGYTISFFSA 131 Query: 126 FHKN-GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELF---KKRSSAARNLTERET 179 + G + ++ + + HG ++ + + L R+LT R+ Sbjct: 132 SKRYKGAISLAGRSGSTQADLDGMWQEHGEDIILMNNMVHLKILTLPYDPPNRSLTNRQR 191 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ GDG T+++IA +GL+ T+ +L A L QA+ KA Sbjct: 192 EALEWVGDGKTTQDIALLMGLTPATIEKHLRLARSSLSVETTAQAVLKA 240 >gi|269794993|ref|YP_003314448.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097178|gb|ACZ21614.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 258 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 18/162 (11%) Query: 91 SIQEETVIESSGQLSVRLEG--GLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANE 144 + E +E++ Q+ P I + I Sbjct: 88 RMPELDGVEATRQIFAPARAASRAGPVRVIVLTTFDLDDRAAAAIRYGASGFLLKDATPA 147 Query: 145 VIIEAHGACYQ------------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 ++ +A + ++ + +LT +E L G + Sbjct: 148 MLRDAIRTVHAGNAVLAPDDLSTLLDGRFRARRPSPPGLEDLTPKEREVLAAVAAGLNNA 207 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA + +S TV ++G+ KL +R+Q + A G + Sbjct: 208 EIARRAFVSESTVKTHVGAVLRKLGLRDRVQVVVLAHEHGLV 249 >gi|261418220|ref|YP_003251902.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319767820|ref|YP_004133321.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374677|gb|ACX77420.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317112686|gb|ADU95178.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 500 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 39/71 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +L+ RE L+L +G ++ E A +L LS +TV Y+ + K++A NR + Sbjct: 430 RSDLVQPMPHLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTE 489 Query: 224 AIAKAIRFGYI 234 AI KAIR G I Sbjct: 490 AIVKAIRDGII 500 >gi|182436043|ref|YP_001823762.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464559|dbj|BAG19079.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ + LA+ V + A G ++I +F + Sbjct: 99 LRAGASGFLLKDASADELAHAVRVVAAGDALLSPNITKRLIVEFSRTAGAPRPPLKARVG 158 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EI+ +L ++ TV ++G VKL +R QA A G Sbjct: 159 ELTERETEVLTLIAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|126729492|ref|ZP_01745306.1| Response regulator [Sagittula stellata E-37] gi|126710482|gb|EBA09534.1| Response regulator [Sagittula stellata E-37] Length = 218 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +I+ + + D LE + LT RE L L +G ++ IAE+L +SV T Sbjct: 125 MILAGDTYVARAVLDILEAAD--NDGREALTMRERQVLYLIAEGCSNAAIAERLSISVKT 182 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V+ + KL + Q +A A++ G + Sbjct: 183 VDNHRTRLMAKLQVHSVAQLVAYALKSGLL 212 >gi|161520367|ref|YP_001583794.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344417|gb|ABX17502.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] Length = 264 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 57/231 (24%), Gaps = 22/231 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72 + LH + A FA + + EL Sbjct: 32 AADWQRALHACVDAFDA--FASPSAIVFYRLDASGEPADFELFGMPESMHRTYVA-RYRM 88 Query: 73 GDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D S ++ + Q + R + +R G Sbjct: 89 LDPLHPSRCASDARTVVTLASQLPDECRDASAYWTRFLRRHGVADVVEIWLRDDGRTVGA 148 Query: 132 VIFTSEFLMLAN---------------EVIIEAHGACYQVITDFLELFKK--RSSAARNL 174 A + + +T L + R L Sbjct: 149 FSLLRFDTRGAARGGDGASTRFAPGEIDALARLQPLAEAALTPLLRTRRGIHRIECEARL 208 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE +L DG +++EIA L L T+ +L KL NR + + Sbjct: 209 TYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 259 >gi|38234861|ref|NP_940628.1| two-component response regulator ChrA [Corynebacterium diphtheriae NCTC 13129] gi|38201125|emb|CAE50849.1| two-component response regulator ChrA [Corynebacterium diphtheriae] Length = 199 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + VI G L ++ S + L+ RE LQ Sbjct: 91 AGAMGYLLKDAPESALHDAVIATFEGRRTLAPKVANALMQRVSKPRQALSAREIEILQNL 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ ++A KL +S TV +L KL NR AI A + I Sbjct: 151 EQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199 >gi|323492273|ref|ZP_08097431.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323313586|gb|EGA66692.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 222 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 38/56 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 NLT+RE ++L G G ++ +IAE+L +S +TV +L + K++A NR+QA+ A Sbjct: 157 NLTKREKEIMRLLGHGASNIQIAEELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212 >gi|310287962|ref|YP_003939221.1| response regulator of two-component system [Bifidobacterium bifidum S17] gi|309251899|gb|ADO53647.1| response regulator of two-component system [Bifidobacterium bifidum S17] Length = 277 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R L+ RE ++L GYT +E+A +L +S+ TV ++ + KL NR + Sbjct: 207 ERGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRTE 266 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 267 LTRWAADRRIV 277 >gi|258651012|ref|YP_003200168.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554237|gb|ACV77179.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 222 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARN 173 + + G + L+ A I L A + Sbjct: 102 HLVLAAIHNGARGYVVKDVDTSALIRAIRDISRGGSAFDARSAAAMVRGLHAGPVDADKK 161 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ +I +KL +S TV ++G+ KL R +A+ A + G Sbjct: 162 LTSREQEVLELLSRGMSNVQIGKKLFISDTTVKFHVGNILRKLGVSRRAEAVHLAGKMGL 221 Query: 234 I 234 I Sbjct: 222 I 222 >gi|225022047|ref|ZP_03711239.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii ATCC 33806] gi|224945168|gb|EEG26377.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii ATCC 33806] Length = 212 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G T L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRLMTRVRTPRTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI L LS TV ++L KL +R A+A A + G + Sbjct: 164 ASGSSNREIGRTLLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGVL 212 >gi|205357555|ref|ZP_02571444.2| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331191|gb|EDZ17955.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 248 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 39 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + ++ + + I +R G + + Sbjct: 91 SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ + LT +E + + +G +++ IA +L + Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLESILTAKEREIVGMVCEGASNKLIARQLNI 209 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236 >gi|146280184|ref|YP_001170341.1| hypothetical protein Rsph17025_4185 [Rhodobacter sphaeroides ATCC 17025] gi|145558425|gb|ABP73036.1| hypothetical protein Rsph17025_4185 [Rhodobacter sphaeroides ATCC 17025] Length = 206 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 17/185 (9%) Query: 52 CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 E+ I D L I W + + + GG Sbjct: 33 TEISTLPPALMQKYCIRGLALEDPMLQWAFRNQGAICWTGLSDRDPAG-----VLAEYGG 87 Query: 112 LLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 G + + IF + + + Q+ ++ Sbjct: 88 HGLTYGAVVSIMTHGRPPLRSFGIFGRPDRIYSEAEMTRIGQILGQMHRSETQI------ 141 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+R+ L+L +G+ ++IA LG++ V L SA ++L A Q + A+ Sbjct: 142 ----LTQRQIDVLRLLAEGHRYKKIAHILGITESAVKVRLKSAALRLGARTAAQTLRMAV 197 Query: 230 RFGYI 234 G + Sbjct: 198 SAGLL 202 >gi|325927834|ref|ZP_08189059.1| two component transcriptional regulator, LuxR family [Xanthomonas perforans 91-118] gi|325541824|gb|EGD13341.1| two component transcriptional regulator, LuxR family [Xanthomonas perforans 91-118] Length = 200 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 44/96 (45%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + I A A +V+ + + + + +L+ RE L+ G + EIAE L Sbjct: 103 MRKELRDTIRAVHAGRRVVPAEIAMELAQHAGEDDLSPREMEVLRELARGNANREIAESL 162 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV A++ KL A +R A+ A++ G + Sbjct: 163 SVTEGTVKAHMKRILSKLGAKDRTHAVLLALKRGIL 198 >gi|171743289|ref|ZP_02919096.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] gi|171278903|gb|EDT46564.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] Length = 248 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA++L +S+ TV ++ K++A +R+QA+ A Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFA 242 Query: 229 IRFGYI 234 + Sbjct: 243 YENHLV 248 >gi|163761077|ref|ZP_02168154.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] gi|162281628|gb|EDQ31922.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] Length = 223 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNL 174 L GYV+ + + +V+ + + +L Sbjct: 104 LRAGARGYVLKSGSLATIGKDVLSVIEGGSPISPQIARHLLAMVSSGAAGSSEGAPQIDL 163 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RET L GY EI EKLG+S TV ++ + KL+ + +AIA+A R G + Sbjct: 164 TNRETEILNAVAKGYKRREIGEKLGISTGTVGNHINNIYQKLNVNSNTEAIARATRMGLL 223 >gi|21219875|ref|NP_625654.1| two component system DNA binding response regulator [Streptomyces coelicolor A3(2)] gi|256789028|ref|ZP_05527459.1| two component system DNA binding response regulator [Streptomyces lividans TK24] gi|289772921|ref|ZP_06532299.1| two component system DNA binding response regulator [Streptomyces lividans TK24] gi|13122115|emb|CAC32294.1| putative two component system DNA binding response regulator [Streptomyces coelicolor A3(2)] gi|289703120|gb|EFD70549.1| two component system DNA binding response regulator [Streptomyces lividans TK24] Length = 211 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA+ V A G L + + LT RET L L Sbjct: 101 AGATGYLLKDAPPEDLADAVRTAAAGRTALAPAVADRLMHRLRTPGTTLTRRETEVLALV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++ I +L L+ TV ++L KLD +R A+A A G I Sbjct: 161 ADGLSNQAIGRRLHLTEGTVKSHLARVYAKLDVDSRTAAVATAGSLGLI 209 >gi|325001951|ref|ZP_08123063.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 223 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Query: 151 GACYQVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 G V+ ++ L + S A LTERET L+L G T+ +IA KL +S TV Sbjct: 134 GLAGLVLGEYRRLAETPKPADGSPAVPALTERETEVLRLVAKGMTARQIAAKLVVSHRTV 193 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++ + KL NR Q + AI G Sbjct: 194 ESHVQNTLRKLQLHNRSQLVRYAIEQGL 221 >gi|307328329|ref|ZP_07607506.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886033|gb|EFN17042.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 211 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA-----RNLTER 177 GY+ + + + A G V + L +++ +A LT R Sbjct: 95 AGALGYLTKEAGREDVDRALRAAARGQALLDPAVHARLVALARQQPAAGSGELPAGLTAR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L G ++ EIA L +S TV ++ K + +R QAIA A R+G Sbjct: 155 EAEVLICMAKGLSNREIARSLFVSEATVKTHVNRVFAKTGSRDRGQAIAYAHRYGL 210 >gi|297622936|ref|YP_003704370.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164116|gb|ADI13827.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 478 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 17/167 (10%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLL-----PFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ + E+ + QL +L A + + Sbjct: 296 KPLRALRLWEDPPEGAGRQLERKLRTKSGAVLDTLVFAEAITLEGKPGLLSMFHDITLRK 355 Query: 140 MLANEVII-------EAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGD 187 E++ +A V+ L + ++ A LT RE L+L + Sbjct: 356 QTEAELLAAIDAVMQDATWFGRSVVERLLRARRGATAEAPGATLGDLTARERQVLELIAE 415 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EEIA LGLS +TV Y+ + K+ R +A+ A G I Sbjct: 416 GQKNEEIALALGLSKNTVRNYVANLYAKIGVQGRAEAVIWARERGVI 462 >gi|289706045|ref|ZP_06502418.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557247|gb|EFD50565.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 227 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +LTERE L+L G ++ EIA L +S TV A L KL+ +R+Q I + Sbjct: 156 SPDGSDLTERELGVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIR 215 Query: 228 AIRFGYI 234 A + G + Sbjct: 216 AAQLGLV 222 >gi|38639353|gb|AAR25818.1| putative regulatory protein [Burkholderia cepacia] Length = 301 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 68/245 (27%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E S + + + FA + + A + L Sbjct: 60 TLAHAQSTAERSRIVASLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PSTYRGDYV 117 Query: 67 ILIETYGDDFLFHFNSGLLPIIW-----QSIQEETVIESSGQL-----SVRLEGGLLPFA 116 D +PI+W + E ++ + Sbjct: 118 RHHHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDAGPRASPAALDGFLQTMQDDGMCS 177 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 236 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296 Query: 230 RFGYI 234 + I Sbjct: 297 KLELI 301 >gi|108805597|ref|YP_645534.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766840|gb|ABG05722.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 219 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 42/84 (50%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ + + + + L++RE L+L +G ++ EIA +L +S TV +++ Sbjct: 131 RVAARVVRELHGARRAEPNVFQELSDREMEVLKLIAEGLSNAEIAARLYVSEKTVKSHVS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R QA A R G + Sbjct: 191 NILGKLHLADRTQAAVYAWREGVV 214 >gi|297190315|ref|ZP_06907713.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150449|gb|EDY66317.2| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 283 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 32/71 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S LT RE L L G G T++EIA +L LS T ++ KL A +R Q Sbjct: 207 HPDPSPRLNALTAREHEVLGLVGAGLTNDEIARRLVLSPATAKTHVSRIMSKLGARDRTQ 266 Query: 224 AIAKAIRFGYI 234 + A G I Sbjct: 267 LVITAYESGMI 277 >gi|238919142|ref|YP_002932656.1| nitrate/nitrite response regulator protein NarP [Edwardsiella ictaluri 93-146] gi|238868710|gb|ACR68421.1| nitrate/nitrite response regulator protein NarP [Edwardsiella ictaluri 93-146] Length = 215 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + I V ++ E ++ + Sbjct: 78 LRSEGIDARIIILTVSDARSDVYALVDAGADSYLLKDSEPEALLAQIRQAAEGRSVFSES 137 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ +L + + +LTERE LQ G ++++IA +L +S TV ++ + KL Sbjct: 138 VSAYLSTRSEIADPLADLTERELDVLQEVVRGMSNKQIAAQLHISEETVKVHIRNLLRKL 197 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 198 NVRSRVAATVL 208 >gi|271965002|ref|YP_003339198.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508177|gb|ACZ86455.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 42/84 (50%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G ++ ++ +R++A LT RE L G ++ EI +L LS +TV +++ Sbjct: 130 GVAATILDLVRQVPIRRTAALDGLTPREVEIFGLLARGRSNSEICAELVLSENTVKSHVR 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KLD +R+ A+ A G + Sbjct: 190 AVLQKLDLRDRVHAVIHAYENGLV 213 >gi|226940995|ref|YP_002796069.1| NarL [Laribacter hongkongensis HLHK9] gi|226715922|gb|ACO75060.1| NarL [Laribacter hongkongensis HLHK9] Length = 218 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 40/102 (39%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + +S + + ++ V +LT RE L+ G ++ Sbjct: 113 FLLSSIRRAVTGDSVLSPEMTAKLVARLRDPRPAASRPDVDSLTPRERETLRHLARGASN 172 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +EIA L L+ TV ++ + KL+ +R+QA A+ Sbjct: 173 KEIARSLDLAESTVKVHVQNILRKLNLSSRVQAAVFAVENEL 214 >gi|154486803|ref|ZP_02028210.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis L2-32] gi|154084666|gb|EDN83711.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis L2-32] Length = 245 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 183 DRLSNREQEVMRLIARGYTYKEVASELFISIKTVETHMSSVLRKLQLSNRSELTRWAADR 242 Query: 232 GYI 234 + Sbjct: 243 RIV 245 >gi|126462491|ref|YP_001043605.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126104155|gb|ABN76833.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17029] Length = 240 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAE 196 + + I A + L ++++ + LTE+E + +G ++EIA Sbjct: 143 PVRSLGNAIRFMHAGEHYLPLELARDRRQAPDSSGGRLTEKEMLVMSYLAEGRQNKEIAH 202 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L+ T+ ++ S KL A NR QA+ A G I Sbjct: 203 GLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 240 >gi|330720547|gb|EGG98827.1| two component transcriptional regulator2C LuxR family protein [gamma proteobacterium IMCC2047] Length = 151 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + E + V ++FLEL ++ LT+RE L + G ++EIA Sbjct: 49 GSPVDQMREKLPLISQGGRYVASEFLELIQQ-GQQVSALTDRELQVLNMIVAGKINKEIA 107 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L +S TV+ + S KL+ + Q +A+A++ G I Sbjct: 108 EALFISPKTVDKHRTSLMSKLEVHSVAQLLARALKDGLI 146 >gi|330445311|ref|ZP_08308963.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489502|dbj|GAA03460.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 208 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 11/134 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154 + + + V ++ + +IE + Sbjct: 68 LNAMRNEGILACIVVLTVSDSRSDIKTLLNAGADGYLLKDTEPDELIELLKSALCGGKAY 127 Query: 155 -QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 V+ + L LTERE LQ G + +IAE+L +S TV ++ S Sbjct: 128 SAVVKECLAEQHSTDDMLSQLTERELQILQEVAKGQRNRQIAEQLFISEATVKVHMKSLL 187 Query: 214 VKLDAVNRIQAIAK 227 KL +R A Sbjct: 188 KKLQVKSRTAATIL 201 >gi|319652400|ref|ZP_08006516.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317395862|gb|EFV76584.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 210 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G +V+ ++ + +LT RE + L+ G+G ++ EIAE+L +S TV Sbjct: 128 GVAAKVVPQLMK-QQDTKEPDPSLTPRERAILKCIGEGLSNNEIAERLAISTGTVKNNTS 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R Q AIR + Sbjct: 187 QILTKLDLRDRTQLAIYAIRHNLV 210 >gi|284043079|ref|YP_003393419.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947300|gb|ADB50044.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 229 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A LTERE L+L G ++ EIAE+L ++ TV ++ +KL +R+QA+ Sbjct: 153 RPPALDELTERELEVLELIACGLSNAEIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVV 212 Query: 227 KAIRFGYI 234 A G + Sbjct: 213 LAYEAGVV 220 >gi|261250785|ref|ZP_05943359.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891] gi|260937658|gb|EEX93646.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891] Length = 222 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 38/56 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 NLT+RE ++L G G ++ +IA++L +S +TV +L + K++A NR+QA+ A Sbjct: 157 NLTKREKEIMRLLGHGASNVQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212 >gi|325266892|ref|ZP_08133563.1| nitrate/nitrite response regulator protein NarL [Kingella denitrificans ATCC 33394] gi|324981633|gb|EGC17274.1| nitrate/nitrite response regulator protein NarL [Kingella denitrificans ATCC 33394] Length = 224 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 38/80 (47%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +++ + + S+ LT RE L G++++ IA L L+ TV ++ + Sbjct: 134 ARLVQSLIRPHQPESTPLDELTARELEILGHLSAGHSNKIIARHLDLAESTVKVHVQNIL 193 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KL+ +R+QA A++ Sbjct: 194 RKLELDSRVQAAVYAVQHNI 213 >gi|256395013|ref|YP_003116577.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361239|gb|ACU74736.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 441 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L L G ++ EIA +L ++ TV ++ KL +R QA+ A G Sbjct: 366 ALTPRETEVLLLIARGLSNPEIAAELVVTDETVKTHVSRVLTKLGLRDRTQAVVAAYESG 425 Query: 233 YI 234 + Sbjct: 426 LV 427 >gi|289425149|ref|ZP_06426926.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289426574|ref|ZP_06428314.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295130635|ref|YP_003581298.1| putative Hemoglobin-dependent two component system response regulator HrrA [Propionibacterium acnes SK137] gi|289154127|gb|EFD02815.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289160218|gb|EFD08382.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291377220|gb|ADE01075.1| putative Hemoglobin-dependent two component system response regulator HrrA [Propionibacterium acnes SK137] gi|313764411|gb|EFS35775.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772207|gb|EFS38173.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313792097|gb|EFS40198.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313801951|gb|EFS43185.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313807563|gb|EFS46050.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810072|gb|EFS47793.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313812898|gb|EFS50612.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815948|gb|EFS53662.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818604|gb|EFS56318.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313825246|gb|EFS62960.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313827534|gb|EFS65248.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313830402|gb|EFS68116.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313833772|gb|EFS71486.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313838777|gb|EFS76491.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314915403|gb|EFS79234.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918316|gb|EFS82147.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920126|gb|EFS83957.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314931648|gb|EFS95479.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314955704|gb|EFT00106.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958103|gb|EFT02206.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314959957|gb|EFT04059.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314962754|gb|EFT06854.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314967878|gb|EFT11977.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314973404|gb|EFT17500.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314976083|gb|EFT20178.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314978528|gb|EFT22622.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314983897|gb|EFT27989.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988079|gb|EFT32170.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989886|gb|EFT33977.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315077971|gb|EFT50022.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315080596|gb|EFT52572.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315084266|gb|EFT56242.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315085610|gb|EFT57586.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315088338|gb|EFT60314.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095949|gb|EFT67925.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315098580|gb|EFT70556.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101419|gb|EFT73395.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315108635|gb|EFT80611.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327326231|gb|EGE68021.1| DNA-binding response regulator VraR [Propionibacterium acnes HL096PA2] gi|327331894|gb|EGE73631.1| DNA-binding response regulator VraR [Propionibacterium acnes HL096PA3] gi|327443096|gb|EGE89750.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327445878|gb|EGE92532.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448140|gb|EGE94794.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327450738|gb|EGE97392.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327453185|gb|EGE99839.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327453920|gb|EGF00575.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328753426|gb|EGF67042.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328754157|gb|EGF67773.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328754593|gb|EGF68209.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328760809|gb|EGF74375.1| DNA-binding response regulator VraR [Propionibacterium acnes HL099PA1] gi|332675478|gb|AEE72294.1| nitrate/nitrite response regulator protein NarP [Propionibacterium acnes 266] Length = 210 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMARMRSPRTSLTARELDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|251795413|ref|YP_003010144.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543039|gb|ACT00058.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 235 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S+ LT RE L+ G +++EIA GLS HTV +L + KL NR+Q Sbjct: 165 DASAMTTPLTAREKDILERVVTGESNKEIAVAFGLSEHTVKNHLKNILQKLHLDNRVQLT 224 Query: 226 AKAIRFGYI 234 A G + Sbjct: 225 RYAYEQGML 233 >gi|75812776|ref|YP_320393.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705532|gb|ABA25204.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 209 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE + L+ G ++ EIA L + TV +++ KLD +R QA+ A++ Sbjct: 145 PELSERELAVLRSLAQGMSNAEIAAALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKR 204 Query: 232 GYI 234 G + Sbjct: 205 GIV 207 >gi|302522019|ref|ZP_07274361.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302430914|gb|EFL02730.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 150 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 1/103 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 +F + ++ A +++T + L+ RE L L G ++ Sbjct: 42 ELFAAVRATADGRSVL-APAVASRLVTSLRAPGADETPPRTPLSAREREVLALVARGTSN 100 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L LS TV +L KL +R A+A G + Sbjct: 101 REIARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 143 >gi|256784889|ref|ZP_05523320.1| two-component system response regulator [Streptomyces lividans TK24] Length = 226 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V L AA +LT RET L L G ++ EIA +L ++ HTV ++ Sbjct: 134 LIAEFVHARGSRL---PVPAAGDLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHIN 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A G + Sbjct: 191 RLFAKLELRDRAQAVIVAYELGLV 214 >gi|169833204|ref|YP_001695355.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|168995706|gb|ACA36318.1| response regulator [Streptococcus pneumoniae Hungary19A-6] Length = 199 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|309799510|ref|ZP_07693740.1| DNA-binding response regulator [Streptococcus infantis SK1302] gi|308116866|gb|EFO54312.1| DNA-binding response regulator [Streptococcus infantis SK1302] Length = 199 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L G +++EIA+KL LS TV Y+ + KL+A NR Sbjct: 127 ELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLNASNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAAKTAEEEGWL 199 >gi|298241780|ref|ZP_06965587.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554834|gb|EFH88698.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LT RE L+L +G T++EIA+KL +S+ TV A+ + KL + Q + A+ Sbjct: 168 ALQTLTGREMEVLKLVAEGSTNQEIADKLVISIKTVQAHRSNMMEKLGLHDITQLVRFAL 227 Query: 230 RFGYI 234 +G I Sbjct: 228 HYGLI 232 >gi|262191657|ref|ZP_06049834.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT 5369-93] gi|262032446|gb|EEY51007.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT 5369-93] Length = 201 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 73 VILTVSDSAADIQALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 132 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 133 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 192 Query: 227 KAIRF 231 + Sbjct: 193 LYLER 197 >gi|152999817|ref|YP_001365498.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|151364435|gb|ABS07435.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] Length = 216 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ Sbjct: 154 ELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQL 213 Query: 232 GYI 234 I Sbjct: 214 ALI 216 >gi|323130577|gb|ADX18007.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 238 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 94 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 153 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 154 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 213 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 214 NLLRKLNVRSRVAATIL 230 >gi|302868391|ref|YP_003837028.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302571250|gb|ADL47452.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 212 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G T L + + LT RET L L Sbjct: 102 AGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALV 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ I +L L+ TV ++L KL +R A+A A G I Sbjct: 162 ADGLSNHSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210 >gi|261392488|emb|CAX50039.1| putative two-component system transcriptional regulator protein [Neisseria meningitidis 8013] gi|308389343|gb|ADO31663.1| putative two-component system response regulator narL [Neisseria meningitidis alpha710] gi|325128344|gb|EGC51228.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis N1568] Length = 218 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|289208427|ref|YP_003460493.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288944058|gb|ADC71757.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp. K90mix] Length = 232 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 151 GACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 ++T + L++++ A LT+RE L + G G T+ IA++L +S HTV Sbjct: 128 WMSRHLMTRLVRLYRQQRTNTYRPACGLTQRELEILAMLGSGETNMNIAKQLFISEHTVK 187 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231 ++L + K++ NR QAI A Sbjct: 188 SHLYNIFRKIEVKNRTQAINWAKDH 212 >gi|305680308|ref|ZP_07403116.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659839|gb|EFM49338.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 212 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G T L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRLMTRVRTPRTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI L LS TV ++L KL +R A+A A + G + Sbjct: 164 ASGSSNREIGRALLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGVL 212 >gi|256391849|ref|YP_003113413.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358075|gb|ACU71572.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 18/138 (13%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 +SG L R L A + + ++ Sbjct: 95 ALAAGASGFLLKRTRPEHLIAA-----IHTIAGGEALLSPAVTRTVIDR----------- 138 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + + LT RE L+L G ++ EIA+ L +S TV ++ Sbjct: 139 --MIEQPARDPRTMRRLSALTPRERDVLELVARGLSNPEIAQTLVVSESTVKTHMKRILD 196 Query: 215 KLDAVNRIQAIAKAIRFG 232 KLD +R+QA+ A G Sbjct: 197 KLDLRDRVQAVILAYEAG 214 >gi|225076056|ref|ZP_03719255.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens NRL30031/H210] gi|241758839|ref|ZP_04756952.1| transcriptional regulatory protein DegU [Neisseria flavescens SK114] gi|224952616|gb|EEG33825.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens NRL30031/H210] gi|241321047|gb|EER57260.1| transcriptional regulatory protein DegU [Neisseria flavescens SK114] Length = 218 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 37/94 (39%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + + V + + LT RE L G++++ IA Sbjct: 117 RKAVDGDNVFSPEMTSRLVQSLISPSPSRSDHLLEQLTPREMEILGYLAAGHSNKIIARH 176 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L+ TV ++ + KL+ +R+QA A++ Sbjct: 177 LNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210 >gi|284054156|ref|ZP_06384366.1| transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291570920|dbj|BAI93192.1| LuxR family transcriptional regulator [Arthrospira platensis NIES-39] Length = 105 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 40/63 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE ++L G T++EIAEKL +S TV+ ++ + K NR++ + ++++G Sbjct: 11 SLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVELVRWSLQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|209526078|ref|ZP_03274610.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209493466|gb|EDZ93789.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 105 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 40/63 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE ++L G T++EIAEKL +S TV+ ++ + K NR++ + ++++G Sbjct: 11 SLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVELVRWSLQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|108803724|ref|YP_643661.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764967|gb|ABG03849.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 253 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+ G T+ EI L +SV TV ++ GS KL NR +AIA+A Sbjct: 190 EPLSERELEVLKHIASGRTNSEIGRHLYVSVGTVKSHTGSIYRKLGVRNRAEAIARAREL 249 Query: 232 GYI 234 + Sbjct: 250 KLL 252 >gi|152965947|ref|YP_001361731.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360464|gb|ABS03467.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 230 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAG 186 ++ + ++ V Q T E R+LT RE L+ Sbjct: 113 DAIRIVASGSSVVAPRVVRRMLDLFAPQFPTTAGEARDDGLDHRLRSLTPRELDVLRCLA 172 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ EIAE+L LS+ TV ++G+ KL +R+QA+ A FG + Sbjct: 173 EGSSNAEIAERLVLSLTTVKTHVGNILAKLGLRDRVQAVIAAYEFGLV 220 >gi|199597520|ref|ZP_03210949.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591543|gb|EDY99620.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 202 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ + LTERE + L G +S++IA L LS TV YL + KL NRI+AI Sbjct: 134 ITAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIE 193 Query: 227 KAIRFGYI 234 A R ++ Sbjct: 194 MAKRNKWL 201 >gi|115376214|ref|ZP_01463456.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115366787|gb|EAU65780.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 202 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + L++RE LQL G ++ E A L LS T+ +L KL+ NR++A Sbjct: 131 PDADALLKPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEA 190 Query: 225 IAKAIRFGYI 234 + + IR G I Sbjct: 191 VTEGIRKGLI 200 >gi|34541106|ref|NP_905585.1| LuxR family DNA-binding response regulator [Porphyromonas gingivalis W83] gi|34397422|gb|AAQ66484.1| DNA-binding response regulator, LuxR family [Porphyromonas gingivalis W83] Length = 227 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +Q DGY+++E AEK+ LS TV + + KL N + I A++ G Sbjct: 163 ELTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFTNAAELIRYAVKSG 222 Query: 233 YI 234 + Sbjct: 223 LV 224 >gi|324114391|gb|EGC08360.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] Length = 214 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 14/141 (9%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I E ++ A Sbjct: 71 LNALRRDGVTAQIIIITVSDSASDIYALIDAGADGYLLKDSEPESLLAAIQKGANGGKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++++L ++ S LTERE L G ++++IA L +S TV ++ Sbjct: 131 SARVSEYLRERERFGSKDDPFSTLTERELDVLHELAKGLSNKQIASALNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 + KL+ +R+ A ++ Sbjct: 191 NLLRKLNVRSRVAATILFLQH 211 >gi|315646683|ref|ZP_07899799.1| two-component response regulator yhcZ [Paenibacillus vortex V453] gi|315277889|gb|EFU41212.1| two-component response regulator yhcZ [Paenibacillus vortex V453] Length = 213 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 H + + + + LT+RE L+ G +++EIA +L ++ TV Sbjct: 124 RMLHPQVTNQLIAHVATDGEAAKGIDILTKREQHVLEQITMGRSNKEIAVELHITEKTVK 183 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ K++ +R QA AIR + Sbjct: 184 THITHILGKMEVQDRTQAALYAIRNHW 210 >gi|302340120|ref|YP_003805326.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301637305|gb|ADK82732.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 220 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ + + SA LT RE ++L G + ++A+ L +S TV + Sbjct: 132 LDAIVGKLLENSYNIMDVSDSAYATLTAREQEIMRLLAQGNSVRKVAQMLFISKKTVENH 191 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 S KL+ N ++ + A R G I Sbjct: 192 RTSIFKKLNINNSVELVHYATRIGLI 217 >gi|163839801|ref|YP_001624206.1| LuxR family two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953277|gb|ABY22792.1| two-component response regulator, LuxR family [Renibacterium salmoninarum ATCC 33209] Length = 67 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT RE L GY++ EIA L LS TV ++G KL A +R+Q + A Sbjct: 2 QSLTAREHELFLLIAQGYSNPEIASNLFLSEATVKTHVGHILSKLGARDRVQIVVIAYET 61 Query: 232 G 232 G Sbjct: 62 G 62 >gi|89897364|ref|YP_520851.1| hypothetical protein DSY4618 [Desulfitobacterium hafniense Y51] gi|89336812|dbj|BAE86407.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 212 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A LTERE L L G+T+ EIA L +S TV+ + + KL ++++ Sbjct: 140 RQGNEDAYETLTEREREILILLAKGHTNNEIAPILNISSKTVDYHRSNLMKKLSLHSKVE 199 Query: 224 AIAKAIRFGYI 234 A++ G I Sbjct: 200 LTKYALKRGLI 210 >gi|116054260|ref|YP_788704.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254243626|ref|ZP_04936948.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192] gi|115589481|gb|ABJ15496.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa UCBPP-PA14] gi|126197004|gb|EAZ61067.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192] Length = 496 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 11/138 (7%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITD 159 G + A + ++ S+ E+ + +A +I Sbjct: 348 DRNGLDCLVSAEAVSLNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEK 407 Query: 160 FLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + +LT RE L G +EIA++LGL+ +TV ++ + K Sbjct: 408 LANVRRANAPGTGAELADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAK 467 Query: 216 LDAVNRIQAIAKAIRFGY 233 LD +R +AI A G+ Sbjct: 468 LDVHSRGEAIVWARERGF 485 >gi|77465691|ref|YP_355194.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126464170|ref|YP_001045283.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|221369755|ref|YP_002520851.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] gi|77390109|gb|ABA81293.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] gi|126105981|gb|ABN78511.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|221162807|gb|ACM03778.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] Length = 226 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 18/181 (9%) Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 + + D + S W ++ + Sbjct: 61 FPSSWIRHYTVQAFGLRDPLIRWAASANGAARWSAVHLPDEAG-----VLAAYRRHGLRF 115 Query: 117 G--IAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G I P R + + +F + N I ++ + Sbjct: 116 GCVIGLPARTARSRKRSFGLFARNDREMTNHEIATLRATLAELH----------APNRDA 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT + L++ +G +EIA +LG++ V A +A +L A +QA A R G Sbjct: 166 LTPSQAEVLRMLSEGVRYKEIAHRLGITEGAVKARFKAACDRLGARTAVQAANIAQRRGL 225 Query: 234 I 234 + Sbjct: 226 L 226 >gi|300784317|ref|YP_003764608.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299793831|gb|ADJ44206.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 213 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA----ARNLTE 176 L G++ ++ +A + A G ++ +E + + LT Sbjct: 95 LRAGARGFLTKDADAESIARALRSAAAGQSTVDGELQRRLVEAAARSAPPRVKEVEGLTA 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G ++ EIA L +S TV ++ K +R QA+A A R G Sbjct: 155 RELEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFAYRAGI 211 >gi|297197302|ref|ZP_06914699.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146673|gb|EFH28280.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 228 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 +G H V L I + LT Sbjct: 101 SGFLLKDVTPEHLVAAVRLVRSGDALLAPTITR-RLIERFAQREEAVPSADVHRDLSGLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++ E+AE+L LS TV ++G KL+ +R+QA+ A G I Sbjct: 160 PRELEVLRLLATGLSNAELAERLFLSPTTVKTHIGRILSKLELRDRVQAVVLAYESGLI 218 >gi|318061580|ref|ZP_07980301.1| two component system response regulator [Streptomyces sp. SA3_actG] gi|318080493|ref|ZP_07987825.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 167 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE ++L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 94 PELDRLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLA 153 Query: 229 IRFGYI 234 G + Sbjct: 154 YETGIV 159 >gi|308178154|ref|YP_003917560.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745617|emb|CBT76589.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 222 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 18/143 (12%) Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGA--------CYQVI 157 G L +A V VI + ++ I +A ++ Sbjct: 80 GLLGSTRFLALSVSDAAQDVVTVIRSGARGYVTKSISGAEISDAVRRVAGGDAVFSPRLA 139 Query: 158 TDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 L+ F + A L++RE ++L GY+ +E+A++L +SV TV +++ + Sbjct: 140 GFVLDAFGSSTPVAEIDEELDLLSDRELQVMRLIARGYSYKEVAKELFISVKTVESHVSN 199 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL NR + A+ + Sbjct: 200 VLRKLQLSNRHELTRWAVDRKIL 222 >gi|194476794|ref|YP_002048973.1| possible transcriptional regulator [Paulinella chromatophora] gi|171191801|gb|ACB42763.1| possible transcriptional regulator [Paulinella chromatophora] Length = 90 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 39/75 (52%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + L + + NL+ RE ++L G T++EIA L +S TV+ ++ + K N Sbjct: 1 MSLIAHFTLPSDNLSGREVELIELLATGLTNQEIATHLMISKRTVDNHICNIFTKTGVNN 60 Query: 221 RIQAIAKAIRFGYIC 235 RI+ + AI G IC Sbjct: 61 RIKLLNWAIDSGRIC 75 >gi|167554141|ref|ZP_02347882.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442551|ref|YP_002041509.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198244741|ref|YP_002216317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207857666|ref|YP_002244317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194401214|gb|ACF61436.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197939257|gb|ACH76590.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205321582|gb|EDZ09421.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|206709469|emb|CAR33813.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 215 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|16765574|ref|NP_461189.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180821|ref|YP_217238.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613039|ref|YP_001587004.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167992577|ref|ZP_02573674.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242357|ref|ZP_02667289.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261744|ref|ZP_02683717.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466061|ref|ZP_02699931.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194449116|ref|YP_002046301.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197265746|ref|ZP_03165820.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200388108|ref|ZP_03214720.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238913787|ref|ZP_04657624.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16420784|gb|AAL21148.1| response regulator in two-component regulatory system with NarQ (or NarX) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128454|gb|AAX66157.1| response regulator in two-component regulatory system with NarQ (or NarX) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362403|gb|ABX66171.1| hypothetical protein SPAB_00746 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407420|gb|ACF67639.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631360|gb|EDX49920.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244001|gb|EDY26621.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199605206|gb|EDZ03751.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329245|gb|EDZ16009.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338346|gb|EDZ25110.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349503|gb|EDZ36134.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247456|emb|CBG25283.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994331|gb|ACY89216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158805|emb|CBW18318.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913237|dbj|BAJ37211.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224903|gb|EFX49966.1| Nitrate/nitrite response regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322715299|gb|EFZ06870.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|332989180|gb|AEF08163.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 215 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|325202056|gb|ADY97510.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240149] gi|325208190|gb|ADZ03642.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis NZ-05/33] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|167588375|ref|ZP_02380763.1| transcriptional regulator FimZ [Burkholderia ubonensis Bu] Length = 169 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 13/165 (7%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTS 136 PI + E +L R+ L + F K G F S Sbjct: 5 REHPIELAILDIEIPGGDGLRLLKRIRAEGLKTRVLIFSAMDERIYSVRASKAGANGFLS 64 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTERETSCLQLAGDGY 189 + +A +I + + ++ ++ LT+RE + L+ G Sbjct: 65 KRNDIAQILIAVKTILSGYLFFPAEAVSALYHDRTRQSANRTGGLTDRELTVLRGLARGS 124 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +I E L +S TV+ Y + KL + + A R G I Sbjct: 125 SNRQIGEDLCISNKTVSTYKSNIFEKLGVSSVVGLADYARRNGLI 169 >gi|153831751|ref|ZP_01984418.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] gi|148872261|gb|EDL71078.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] Length = 214 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 150 HGACYQVITDFL------ELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + +++ + E+ A LT RE LQ+ +G ++ EIA+ L +S Sbjct: 125 NWLSRRLLDQLVNYYKGKEVHHVVEPAIEVELTRREVQVLQMLKEGGSNMEIADSLFISE 184 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 HT+ ++L + K++ NR QA + A R Sbjct: 185 HTIKSHLYNIFRKIEVKNRTQATSWAKRN 213 >gi|87124675|ref|ZP_01080523.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9917] gi|86167554|gb|EAQ68813.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9917] Length = 188 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R +L+++E + + DG +++EI+E+L +S+ TV ++L S KL +R QA Sbjct: 117 RPPGWDDLSKKELEVIYILADGLSNKEISEQLFVSIETVKSHLNSIYSKLAVRSRAQAAI 176 Query: 227 KA 228 A Sbjct: 177 LA 178 >gi|310821776|ref|YP_003954134.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309394848|gb|ADO72307.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca DW4/3-1] Length = 254 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + L++RE LQL G ++ E A L LS T+ +L KL+ NR++A Sbjct: 183 PDADALLKPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEA 242 Query: 225 IAKAIRFGYI 234 + + IR G I Sbjct: 243 VTEGIRKGLI 252 >gi|239916849|ref|YP_002956407.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414690|ref|ZP_06246432.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838056|gb|ACS29853.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 227 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +LTERE L+L G ++ EIA L +S TV A L KL+ +R+Q I + Sbjct: 156 SPDGSDLTERELGVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIR 215 Query: 228 AIRFGYI 234 A + G + Sbjct: 216 AAQLGLV 222 >gi|172040144|ref|YP_001799858.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851448|emb|CAQ04424.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 264 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT RE L L G +++EIAEKL +S+ TV ++G +K + +R+ A Sbjct: 185 EDDLGLVDPLTRREREILCLIAKGQSNQEIAEKLFISLPTVKTHVGRVLMKTGSRDRVHA 244 Query: 225 IAKAIRFGYI 234 + A++ + Sbjct: 245 VLFALKHHLV 254 >gi|29832581|ref|NP_827215.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609701|dbj|BAC73750.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R+ LT RE L G++++EIAE+L +S TV ++ A KL A +R Sbjct: 150 ERDPARAERLDALTGREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDR 209 Query: 222 IQAIAKAIRFGYI 234 Q + A G + Sbjct: 210 AQLVVIAYESGLV 222 >gi|300868966|ref|ZP_07113570.1| GAF modulated transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] gi|300333033|emb|CBN58762.1| GAF modulated transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] Length = 233 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 19/225 (8%) Query: 11 SSSLQELSPRL------HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + LQ L L +++RI A +T + F + ++ Sbjct: 1 MADLQSLFQILTQAKDEQELRSRICAEVSEYFTAKRSGLFFFDAPKRRIRDRNLQNLMEL 60 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + T + L + P+ + V + QL G P+ Sbjct: 61 ---ALSTEHNPVLRYLVERHTPVH----EALVVSPKAWQLICPRADHWHVMTG---PIVN 110 Query: 125 GFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELF-KKRSSAARNLTERETSC 181 G V FT + M + + +++ C + T + + LT RE Sbjct: 111 QGQLVGAVGFTRDRSMGSFDTQNLMDLSALCLHLSTWVARVRSPHQLLHTNRLTSRELQI 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L G T+ EI E+L ++ ++V L KL+ +R Q +A Sbjct: 171 AELVAQGLTNAEIGERLWITENSVKQALKRMFRKLEVSSRAQMVA 215 >gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 226 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 15/226 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALD---FPRRQQLICELHNYDLDSGDIPNILIE 70 + + +Q ++ F++ +A ++Q + + + D L + Sbjct: 8 VDDEPGLREAVQAYLEDSGFSVAAAPNAQAGWELLQQQTPDLVITDIMMPQVDGYQFLQQ 67 Query: 71 TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D LP+++ + + ++ + + + L P +A + Sbjct: 68 LRDDP-----RYSRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNILRQ 122 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + S L I E ++T L + + +LT RE S L L Sbjct: 123 RTNQQSSESTNLADLASQIAE----IRSILTKQNALERNITPIKIDLTPREQSVLDLVAQ 178 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA L SV + Y+ K +R + + A+ G Sbjct: 179 GLMNKEIARHLNTSVRNIEKYVSRLFSKTGTNSRTELVRFALEHGL 224 >gi|119717710|ref|YP_924675.1| response regulator receiver [Nocardioides sp. JS614] gi|119538371|gb|ABL82988.1| response regulator receiver [Nocardioides sp. JS614] Length = 229 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ L A LT++E G ++ EIA + LS TV ++G+ K Sbjct: 147 LLDGRLRSQAPLPPAYLTLTDKEREVFTAVARGLSNTEIAGLVFLSESTVKTHVGAILRK 206 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R+Q + A G + Sbjct: 207 LGLRDRVQIVVFAYEHGLV 225 >gi|78047709|ref|YP_363884.1| two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036139|emb|CAJ23830.1| two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 214 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 44/96 (45%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + I A A +V+ + + + + +L+ RE L+ G + EIAE L Sbjct: 117 MRKELRDTIRAVHAGRRVVPAEIAMELAQHAGEDDLSPREMEVLRELARGNANREIAESL 176 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV A++ KL A +R A+ A++ G + Sbjct: 177 SVTEGTVKAHMKRILSKLGAKDRTHAVLLALKRGIL 212 >gi|332523779|ref|ZP_08400031.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332315043|gb|EGJ28028.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 198 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL ++ + + L+ RE + L G ++ EIA+KL LS TV YL KL+A NR Sbjct: 126 ELIEEVTFSTNPLSPREQEVMSLVVQGASNHEIAQKLFLSNGTVRNYLTCVFTKLNANNR 185 Query: 222 IQAIAKAIRFGYI 234 +A G+I Sbjct: 186 TEAAKIVQEKGWI 198 >gi|323490881|ref|ZP_08096077.1| two-component response regulator [Planococcus donghaensis MPA1U2] gi|323395449|gb|EGA88299.1| two-component response regulator [Planococcus donghaensis MPA1U2] Length = 198 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G EL + LT+RE ++L Sbjct: 94 AGVSGYLLKDSPSEDLATSIRTIMSGRRIYA----PELVDLAYADENPLTDREKQVMELI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G +++EIA++L ++ TV Y+ + KL+ NRI+AI++ G+ Sbjct: 150 AEGRSTKEIAKELFITTGTVRNYISTILDKLEVSNRIEAISRFKEKGW 197 >gi|307545446|ref|YP_003897925.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Halomonas elongata DSM 2581] gi|307217470|emb|CBV42740.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Halomonas elongata DSM 2581] Length = 219 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 19/144 (13%) Query: 109 EGGLLPFAG--IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------- 154 FAG + F V + + + ++ Sbjct: 74 RLRANEFAGRIVIFTVSDHEEDVVAALHAGADGYLLKDMDPDDMVHQLRQAALGRMVISD 133 Query: 155 ---QVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ + L K + + +LT+RE L+ G +++ IA +L ++ TV ++ Sbjct: 134 SLASLLAEALRNQKGQSTAPDIHSLTQREREILRELAAGLSNKLIARRLDITEGTVKVHV 193 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL+ +R++A A++ G Sbjct: 194 KHLLKKLNLRSRVEAAVWAVQEGI 217 >gi|290963157|ref|YP_003494339.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260652683|emb|CBG75816.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 231 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 4/100 (4%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEI 194 ++A + A ++I D AAR LT RE L L G ++ EI Sbjct: 125 RVIAAGDALLAPSVTRRLIEDMARRRPAPPGAARLRLNGLTPREAEVLSLVAQGQSNTEI 184 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL A +R Q + A G + Sbjct: 185 AARLVVAEQTVKTHMTRLLAKLGARDRAQLVVFAYESGLV 224 >gi|257069188|ref|YP_003155443.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560006|gb|ACU85853.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 51/121 (42%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + + + + A + + E ++ +S N Sbjct: 104 IRAGASGFLLKDAQPEDLLGAIRTVHSGDAVIAPSATRRLLERVVAAPEPEQQDASVLEN 163 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G G++++EI +L ++ TV ++G KL A +R+QA+ A G Sbjct: 164 LTEREREVLTLMGRGFSNQEIGAELFVAEATVKTHVGRVLAKLGARDRVQAVIIAFETGL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|291299547|ref|YP_003510825.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568767|gb|ADD41732.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 ++A + A +++ DF + + LTERET L L G +++EIA Sbjct: 118 RVVARGDALIAPTITRRLLADFATQHRAPQPNPRLNALTERETEVLGLIAAGLSNDEIAA 177 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 KL LS T ++ KL A +R Q + A G Sbjct: 178 KLFLSPATSKTHVSRIMSKLGARDRAQLVILAYESGI 214 >gi|218886123|ref|YP_002435444.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757077|gb|ACL07976.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 216 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +I DFL ++ S + L++RE L+L +G+ ++ IA+KL +S TV + Sbjct: 130 ISELLIEDFLRHGRRESGSLLDLLSDREKQVLKLVAEGHGNKMIADKLCISHKTVEKHKA 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL A + + ++ AI G Sbjct: 190 NLKRKLGADSTAELVSFAIEHGL 212 >gi|254228708|ref|ZP_04922131.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262396570|ref|YP_003288423.1| transcriptional regulator VpsT [Vibrio sp. Ex25] gi|151938655|gb|EDN57490.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262340164|gb|ACY53958.1| transcriptional regulator VpsT [Vibrio sp. Ex25] Length = 222 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + G ++++IAE+L +S +TV +L + K++ NR+QA+ A Sbjct: 157 LTKREKQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIEVKNRVQALIWAKEN 214 >gi|325204234|gb|ADY99687.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240355] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|325130303|gb|EGC53070.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis OX99.30304] gi|325136264|gb|EGC58872.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M0579] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|300918841|ref|ZP_07135409.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 115-1] gi|300414022|gb|EFJ97332.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 115-1] Length = 225 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 81 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SERVNQYLREREMFGAKEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAATIL 217 >gi|146277715|ref|YP_001167874.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555956|gb|ABP70569.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 210 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G V+ T+ L N + G Y + + + S+ LTE+E + Sbjct: 100 LAAGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELARDRRQAPDSSGGRLTEKEMLVMS 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA L L+ T+ ++ S KL A NR QA+ A G I Sbjct: 160 YLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210 >gi|1498492|gb|AAC45136.1| ORF1; homolog to response regulator of a putative signal transduction system [Streptomyces lividans] Length = 225 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%) Query: 151 GACYQVITDFLELFKKRSSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLS 201 + +E + A N LT RE LQL G ++ E+AE+L LS Sbjct: 127 LLAPAITRRLVERHAHTTPPAPNTTAHRDLQTLTPRELEVLQLLAQGLSNAELAERLYLS 186 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G KL +R+QA+ A G + Sbjct: 187 ETTVKTHVGRILAKLQLRDRVQAVVTAYETGLV 219 >gi|319410499|emb|CBY90860.1| putative two-component system transcriptional regulator protein [Neisseria meningitidis WUE 2594] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|298249263|ref|ZP_06973067.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547267|gb|EFH81134.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 889 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G F + ++ + + Q + D + SS+ L+E Sbjct: 772 GYVFTFTEEGAEMARLLKAVHAAQRTGSLALRLAPEYLQRLLDACAERRTSSSSHILLSE 831 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L G +++EIA+ L +++ TV ++ KL +R QAIA+A + Sbjct: 832 REREIVRLLASGLSNQEIADHLVIAMSTVKWHVRQIFNKLGVNSRTQAIAQARELNVL 889 >gi|269963001|ref|ZP_06177338.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832244|gb|EEZ86366.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 217 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L+ +++ G + EL K LT RE L G ++ +IA+ L + Sbjct: 128 LSRDILNRLLGYLVNLNHTVTELDTKL---EIELTRREMQVLTALCQGGSNLDIADSLFV 184 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 S HTV ++L S KL+ NR+QA+A A R Sbjct: 185 SEHTVKSHLYSIFRKLEVKNRMQAVAWAKRN 215 >gi|240170794|ref|ZP_04749453.1| nitrate/nitrite response regulator protein NarL [Mycobacterium kansasii ATCC 12478] Length = 214 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + LP + G+++ S Sbjct: 54 DVALLDYRMPGMDGAQVAAAVRSYDLPTRVLLISAHDESAIVYQALQQGAAGFLLKDSTR 113 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ + A L+ RE L G + I Sbjct: 114 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPTAPVLSAREREVLNRIARGQSIPAI 173 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 174 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 213 >gi|168487139|ref|ZP_02711647.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|194398168|ref|YP_002038583.1| response regulator [Streptococcus pneumoniae G54] gi|225861819|ref|YP_002743328.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298230314|ref|ZP_06963995.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255058|ref|ZP_06978644.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503771|ref|YP_003725711.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|183569979|gb|EDT90507.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|194357835|gb|ACF56283.1| response regulator TCS11 [Streptococcus pneumoniae G54] gi|225728123|gb|ACO23974.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298239366|gb|ADI70497.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|327389165|gb|EGE87511.1| response regulator [Streptococcus pneumoniae GA04375] Length = 199 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|149024961|ref|ZP_01836341.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|225859757|ref|YP_002741267.1| response regulator [Streptococcus pneumoniae 70585] gi|147929454|gb|EDK80449.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|225720998|gb|ACO16852.1| response regulator [Streptococcus pneumoniae 70585] gi|301794941|emb|CBW37404.1| response regulator protein [Streptococcus pneumoniae INV104] gi|332200013|gb|EGJ14087.1| response regulator [Streptococcus pneumoniae GA47901] Length = 199 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|153004672|ref|YP_001378997.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028245|gb|ABS26013.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 44/97 (45%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++++ A + + LT+RE L+L +G +++E+AE Sbjct: 118 RAVNRGGLVLDPEVARTAMQDAGQATPGGAADPYEALTDREKQVLKLVAEGRSNKEVAEV 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+SV T ++ KL NR + + A++ G I Sbjct: 178 LGISVKTAMSHREHVMEKLQVHNRTELVRFALKKGVI 214 >gi|294053956|ref|YP_003547614.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613289|gb|ADE53444.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%) Query: 118 IAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQ---VITDFLELFKKRSS 169 I V + E ++EA + L +R Sbjct: 88 ILLSVFDSEEDIWNAVQAGVKGYLTKKAGEIEDVMEAIHEVARGGTYFPSGLAQKLERRR 147 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + + LT+RE L+L G +++EI +L LSV V ++ + KLDAV+R QA+ +A Sbjct: 148 SQKGLTDREMEVLKLLASGLSNKEIGSELDLSVAMVKLHIINLREKLDAVDRTQAVVQAF 207 Query: 230 RFGYI 234 + G + Sbjct: 208 KRGIL 212 >gi|218296777|ref|ZP_03497483.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218242866|gb|EED09400.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 207 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 12/159 (7%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEF 138 + + L RL +A + L GYV + Sbjct: 49 DVAILDVSLPDGTGIALCQRLRERFPELRLLALSMHEDLEYVRGFLQAGGQGYVSKAAVD 108 Query: 139 LMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 L + V+ A + + S+ L+ RE L+L G + +E+A Sbjct: 109 QELLDAVLAVARGERYLNPALAMRLAMELVRESAEEAPLSPREEEVLRLLAQGLSHKEVA 168 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EKLG+S TV Y KL +R + + A R G+I Sbjct: 169 EKLGISEKTVATYRERGMEKLGLASRSELLRYAARKGWI 207 >gi|315501316|ref|YP_004080203.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315407935|gb|ADU06052.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 225 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 18/161 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + + +A V +I ++ E + Sbjct: 65 LDVHMPDGGGRAVLEAMRRTHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPEELT 124 Query: 148 EAHGACY--------QVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193 +A ++ L+ F R LT RE L+L GY +E Sbjct: 125 DAIRRVADGDAVFSPRLAGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKE 184 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA++L +S+ TV ++ + KL NR + A + Sbjct: 185 IAKELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 225 >gi|289704669|ref|ZP_06501097.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558623|gb|EFD51886.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 209 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + +A+ V A G L + S + L+ERE L+L Sbjct: 99 NAGAAGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLEL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ A++L +S TV +L KL NR +A+ +A R I Sbjct: 159 IARGATNKMAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208 >gi|257791938|ref|YP_003182544.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475835|gb|ACV56155.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 258 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%) Query: 135 TSEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGY 189 + +F E + + L + + R +LT RE L +G Sbjct: 150 SGDFTEEEEECLAVLNRHLSTCLAVAHPRGLRRDEGKPVVGRTSLTAREQEIAALIAEGL 209 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++++I +L +S +TV ++ K+ NR Q +A+ R Sbjct: 210 SNQQIGLRLFISENTVKKHVKGIFQKMGVSNRHQLMAELYR 250 >gi|298247251|ref|ZP_06971056.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549910|gb|EFH83776.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 4/110 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDF----LELFKKRSSAARNLTERETSCLQ 183 + +A I+ + Q++ + + LT RE L+ Sbjct: 110 DCSAEELCTAIRAVARGQILLQASSAAQLLASLQTKPVAAAPLSVAEQLGLTTRELEVLR 169 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++ EIA L +S TV ++ KL A NR QAI KA + G Sbjct: 170 LVTLGQSNTEIAAALFVSDATVKTHINHIFSKLGARNRSQAIIKARQLGL 219 >gi|298249257|ref|ZP_06973061.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547261|gb|EFH81128.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G ++ EI+E L ++ TV +L + KL +R QA KA G Sbjct: 169 QLTEREREILALLAHGASNREISEALYITGGTVKNHLSNILGKLGVRDRTQAALKARELG 228 Query: 233 Y 233 + Sbjct: 229 W 229 >gi|270308020|ref|YP_003330078.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270153912|gb|ACZ61750.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 224 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LT+RE L++A G ++++IA++L LS T+ +L + KL +R +AI Sbjct: 153 SAVNPLTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNICKKLSVGSRTEAILYG 212 Query: 229 IRFGY 233 ++ G+ Sbjct: 213 LKRGW 217 >gi|5639944|gb|AAD45903.1|AF161327_2 response regulator ChrA [Corynebacterium diphtheriae] Length = 199 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V+ G L ++ S + L+ RE LQ Sbjct: 91 AGAMGYLLKDAPESALHDAVVATFEGRRTLAPEVANALMQRVSKPRQALSAREIEILQNL 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ ++A KL +S TV +L KL NR AI A + I Sbjct: 151 EQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199 >gi|301328679|ref|ZP_07221739.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 78-1] gi|300844929|gb|EFK72689.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 78-1] Length = 216 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 14/134 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 81 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQA 224 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAA 214 >gi|290962363|ref|YP_003493545.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] gi|260651889|emb|CBG75019.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] Length = 234 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGY 189 + + L+ + + ++ A +++ F + R LT RE L+L G Sbjct: 114 LVAAVRLVRSGDALL-APAITRRLVERFARQDAPATPRHRDLAALTPRERDVLRLLAGGL 172 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E+A+ LGLS TV ++ KL +R+QA+ A R G + Sbjct: 173 NNAELADHLGLSEATVKTHVARILAKLGLRDRVQAVIVAYRTGLV 217 >gi|56798118|dbj|BAD82901.1| transcription factor [Pseudomonas sp. MT-1] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 17/144 (11%) Query: 105 SVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEFLMLANEVIIEAHGACY- 154 + R+ + + F V +GY++ + L ++ + A G Sbjct: 71 TRRMRDADIDARIVMFTVSDEQSHVLEALRNGADGYLLKDMDAEQLVEQIRLAATGRMAL 130 Query: 155 -----QVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 QV+ + + + K + +LT+RE L+L G +++ IA KLG++ TV Sbjct: 131 SPELTQVLAEAIRVRPKPTGQVPFSSLTKREKEVLRLIAKGQSNKMIARKLGITEGTVKV 190 Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231 ++ + KL +R++A + Sbjct: 191 HVKNLLHKLGLRSRVEAAVWVLEN 214 >gi|84387407|ref|ZP_00990426.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] gi|84377660|gb|EAP94524.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] Length = 227 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 42/103 (40%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 T + ++ + ++++ K NLT+RE + Sbjct: 112 QDAPIEHLTRCLKTVCDDDLWLPRKLMSHILSNACSYTFKSQVILSNLTKREAQIFKRVV 171 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 G ++ EI+ +L +S TV ++ + K++ NR +AI KA Sbjct: 172 RGDSNLEISSELFISESTVKTHVYNIYKKINVTNRKEAIRKAH 214 >gi|326772247|ref|ZP_08231532.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638380|gb|EGE39281.1| two-component system response regulator [Actinomyces viscosus C505] Length = 230 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 19/172 (11%) Query: 82 SGLLP-IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL- 139 P ++ ++ + + E A + + Sbjct: 59 RATRPDVVCMDLRMSEGDGLTATRQIVAEREGGVPAVLVVTTFDMDADVFGALEAGADGF 118 Query: 140 ---MLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARN------LTERETSCL 182 E +++A V + F +R N LTERE + Sbjct: 119 ILKDCEPEELVDAVRRLASGYGLVDQSVTRRVIAEFARRQGRVENREALGVLTEREREVV 178 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G ++ EIA +L + TV ++L K+ A +R+QA+ A R G + Sbjct: 179 QLLAGGMSNAEIAAELVVETSTVKSHLTRILPKIGARDRVQAVVWAFRNGLV 230 >gi|312960102|ref|ZP_07774614.1| sensory box transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311285596|gb|EFQ64165.1| sensory box transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 498 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 5/99 (5%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194 EV+ +A +I S N LT RE L L +G +EI Sbjct: 389 AAIEEVMQDASWFSQTLIEKLANAKSVNSPNLPNISYTDLTARERDVLGLICEGLADKEI 448 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L L+ +TV ++ + KL +R AI A G Sbjct: 449 ASRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 487 >gi|262203966|ref|YP_003275174.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087313|gb|ACY23281.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 230 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 43/105 (40%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + +L+ V LTERET ++L DG Sbjct: 118 RAVRVIAAGDALLSPSVTRRLISRFADAGRSPTTPVTPGGGPVSALTERETEVVRLVADG 177 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++EEIA++ +S TV ++ A KLDA +R Q + A R G Sbjct: 178 LSNEEIAQRWVVSNATVRTHVSRAMTKLDARDRAQLVVFAYRLGL 222 >gi|206601912|gb|EDZ38394.1| Putative two component transcriptional regulator, LuxR family [Leptospirillum sp. Group II '5-way CG'] Length = 211 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 14/172 (8%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P+ + ES + L + + V + Sbjct: 40 LRTLVDRKAPVDVVVMDIGLPGESGISATRVLRQARPEVRVVMYTVHRVEAEIFSSFSAG 99 Query: 137 EFLMLANEVIIEAHGACYQVIT----------DFLELFKKRSSAAR----NLTERETSCL 182 + +++ + L L + R L+ RET L Sbjct: 100 ADGYCLKDTTVDSLLLAIRAADMGSVYLDPAIAHLALNRIRLPGHPENDNPLSPRETEIL 159 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G ++ EI + G+S+ TV A++ S KL A R A KAI+ G I Sbjct: 160 KLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVKAIKKGLI 211 >gi|254227764|ref|ZP_04921195.1| HTH DNA binding domain family [Vibrio sp. Ex25] gi|262395807|ref|YP_003287660.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25] gi|151939806|gb|EDN58633.1| HTH DNA binding domain family [Vibrio sp. Ex25] gi|262339401|gb|ACY53195.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25] Length = 210 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 11/138 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156 L + V ++ + + ++E +Q Sbjct: 68 LQALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAY 127 Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ +L + LT+RET L+ G+ +++IA++L +S TV ++ S Sbjct: 128 SQEVSKYLSERSGQEDVFDTLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLL 187 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL +R A + Sbjct: 188 KKLQVPSRTAATVLYLER 205 >gi|15595730|ref|NP_249224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099520|ref|ZP_01363438.1| hypothetical protein PaerPA_01000532 [Pseudomonas aeruginosa PACS2] gi|218889274|ref|YP_002438138.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|296387037|ref|ZP_06876536.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313111834|ref|ZP_07797627.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] gi|9946400|gb|AAG03922.1|AE004490_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|218769497|emb|CAW25257.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310884129|gb|EFQ42723.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] Length = 496 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 11/138 (7%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITD 159 G + A + ++ S+ E+ + +A +I Sbjct: 348 DRNGLDCLVSAEAVSLNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEK 407 Query: 160 FLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + +LT RE L G +EIA++LGL+ +TV ++ + K Sbjct: 408 LANVRRANAPGTGAELADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAK 467 Query: 216 LDAVNRIQAIAKAIRFGY 233 LD +R +AI A G+ Sbjct: 468 LDVHSRGEAIVWARERGF 485 >gi|294628631|ref|ZP_06707191.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292831964|gb|EFF90313.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 213 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSS--AARNLTERE 178 +R G Y E L A + H +V L + +S +LTERE Sbjct: 97 LRAGAAGYVYKDVDPEALAGAIRSVHAGHILLQPEVAGALLSQEEAQSGLGRGGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|238064526|ref|ZP_04609235.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237886337|gb|EEP75165.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 229 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 35/86 (40%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + A LTERE L G ++ EIA +L +S TV + Sbjct: 140 LKRLLDRFADALPDPAATPPKALNALTEREREVLVQVARGLSNAEIARELTVSETTVKTH 199 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 +G KL +R+QA+ A G + Sbjct: 200 VGHVLTKLGLRDRVQAVVFAYESGLV 225 >gi|284034798|ref|YP_003384729.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814091|gb|ADB35930.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 216 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R + LT RE L L G G ++ EIA L +S HTV ++ + KL +R Sbjct: 140 RPRAGRVAELDALTSREREILLLLGRGLSNAEIAAALTVSEHTVKTHVSNTLTKLGLRDR 199 Query: 222 IQAIAKAIRFGYI 234 +QA+ A G I Sbjct: 200 VQAVIAAYETGLI 212 >gi|254421507|ref|ZP_05035225.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] gi|196188996|gb|EDX83960.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] Length = 101 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 42/72 (58%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + SA +L++RE ++L G T++EI+++L +S TV+ ++ + K A NR+ Sbjct: 16 DEVIESAQHDLSKRELEIVELVAAGLTNQEISQRLEISKRTVDNHVSNILSKTAAGNRVA 75 Query: 224 AIAKAIRFGYIC 235 + A++ G +C Sbjct: 76 LVRWALQSGKVC 87 >gi|327404862|ref|YP_004345700.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320370|gb|AEA44862.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G + IA++L +S HTV ++ + KL ++++A+ A++ Sbjct: 157 PLSSREMDILNCLAQGKSYTIIADELFISPHTVRKHMTNIYEKLHVNSKVEAVRLAMQKK 216 Query: 233 YI 234 ++ Sbjct: 217 WV 218 >gi|306832945|ref|ZP_07466077.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|325977686|ref|YP_004287402.1| nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304424844|gb|EFM27978.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|325177614|emb|CBZ47658.1| Nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 198 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L+++E LQL G T++EIA+ L LS TV Y+ S KL A NR Sbjct: 126 ELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNR 185 Query: 222 IQAIAKAIRFGYI 234 ++A A G++ Sbjct: 186 VEAARIAEEHGWV 198 >gi|167464268|ref|ZP_02329357.1| two component transcriptional regulator, LuxR family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383996|ref|ZP_08057726.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151473|gb|EFX44660.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 1/103 (0%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 ++++ L +EV + ++ ++ S + LT RET + GY Sbjct: 116 WLLYLHALLDDNSEVARKMADRIMSQFRSPVKGTEQDPSPS-VLTARETEIVAHVSKGYN 174 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++IA +L +S +TV ++ + KL+ NR+Q A A++ Sbjct: 175 NKQIALRLSISENTVKNHMKNILDKLNLENRVQLTAYAVKHQL 217 >gi|302561410|ref|ZP_07313752.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302479028|gb|EFL42121.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 188 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERE 178 +R G Y + L A + H + L ++ A LTERE Sbjct: 72 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQAEVAGALLSQEEAGPGTGRAGALTERE 131 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG + EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 132 REVLGLIADGRANREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 185 >gi|302537766|ref|ZP_07290108.1| two component system DNA binding response regulator [Streptomyces sp. C] gi|302446661|gb|EFL18477.1| two component system DNA binding response regulator [Streptomyces sp. C] Length = 209 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 51/109 (46%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G L L + + A LT+RE LQL Sbjct: 98 AGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLV 157 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++++I+++L LS TV ++L KL +R A+A A I Sbjct: 158 ADGLSNQQISKRLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLI 206 >gi|149925599|ref|ZP_01913863.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825716|gb|EDM84924.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 237 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + S A ++T+RE +Q G+T++EIA ++G+S HTV ++ KL +R Sbjct: 164 AEQDESQKACSITDRELKVIQQVARGFTAQEIAAQMGISTHTVATHVKRIYKKLHVHSRS 223 Query: 223 QAIAKAIRFGYI 234 +A+ +A G + Sbjct: 224 EAVYEATLLGLL 235 >gi|29832148|ref|NP_826782.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609266|dbj|BAC73317.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 154 YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I L +AA L+ RE L L G + EIAE LGLS T ++ Sbjct: 137 ARLIARLLRTPVPPPAAAVGPECLSGREREVLTLVARGLNNTEIAESLGLSPLTAKTHVS 196 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R Q + A G + Sbjct: 197 RIMGKLGARDRAQLVIVAYESGLV 220 >gi|168492022|ref|ZP_02716165.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|183573661|gb|EDT94189.1| response regulator [Streptococcus pneumoniae CDC0288-04] Length = 199 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR Sbjct: 127 ELMEVMMTHPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIAKESGWL 199 >gi|156976380|ref|YP_001447286.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116] gi|156527974|gb|ABU73059.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%) Query: 150 HGACYQVITDFLELFKKRS------SAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + +++ L +K + A LT RE LQ+ DG ++ EIA+ L +S Sbjct: 129 NWLSRRLLDQLLTYYKGKESNYIIEPAIEVELTRREVQVLQMLKDGGSNMEIADSLFISE 188 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 HT+ ++L + K++ NR QA + A R Sbjct: 189 HTIKSHLYNIFRKIEVKNRTQATSWAKRN 217 >gi|15677121|ref|NP_274273.1| LuxR family transcriptional regulator [Neisseria meningitidis MC58] gi|218768252|ref|YP_002342764.1| putative two-component system response regulator [Neisseria meningitidis Z2491] gi|7226490|gb|AAF41630.1| transcriptional regulator, LuxR family [Neisseria meningitidis MC58] gi|121052260|emb|CAM08585.1| putative two-component system response regulator [Neisseria meningitidis Z2491] gi|325140520|gb|EGC63041.1| transcriptional regulatory protein DegU [Neisseria meningitidis CU385] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|84394370|ref|ZP_00993090.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] gi|84374999|gb|EAP91926.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] Length = 229 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT RE ++ G ++ +IA+ L +S TV ++L KL NR+QAIA Sbjct: 163 TPTNVDLTIRELQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 222 Query: 228 A 228 A Sbjct: 223 A 223 >gi|325270893|ref|ZP_08137480.1| transcriptional regulator [Prevotella multiformis DSM 16608] gi|324986690|gb|EGC18686.1| transcriptional regulator [Prevotella multiformis DSM 16608] Length = 246 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 3/151 (1%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 + + V+ L+ + G V ++ ++ + + Sbjct: 89 FDFSGAADLLVLGQRYPLAHLVLWSEELSVGFIRSVVSASGLVSVLMKDAKLPEIEQCLD 148 Query: 147 IEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 H C L + LT+ ET L+ G T+ EIAEK S H Sbjct: 149 YVLHGRRFLCQHAAGLLLTPAETPDRETVKLTKTETEILKEIALGMTTREIAEKRFSSFH 208 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN + + KL + +A+ A+R G + Sbjct: 209 TVNTHRKNIFRKLGVNSVHEAMRYAMRSGLV 239 >gi|302545230|ref|ZP_07297572.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462848|gb|EFL25941.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARN---LTERETSCL 182 ++A + A ++I +F R+ LTERET L Sbjct: 109 DASAEELAHAVRVVAAGDALLAPNITKRLIAEFSRVTAAAPRAPLKDRVGDLTERETEVL 168 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA +L ++ TV ++G +KL +R QA A G + Sbjct: 169 ALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVFAYESGLV 220 >gi|227497046|ref|ZP_03927297.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434] gi|226833464|gb|EEH65847.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434] Length = 222 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERE 178 GY++ S +A V G +++ S A L+ RE Sbjct: 104 AGATGYLVKDSPREDIAGAVRSAVRGYSAMSPAVTTRILAATRRSAAAPSDTAPALSPRE 163 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA +L +S TV +L KL +R A+ +A+R G I Sbjct: 164 REVLAAVARGMSNAQIARELLISEATVKTHLLRVNNKLGVDSRTGAVMEALRQGLI 219 >gi|182413518|ref|YP_001818584.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840732|gb|ACB74984.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 213 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 37/83 (44%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 I + S +++T RE LQLA +G ++ EIAEKL +S T + + Sbjct: 129 LSEWAINALVTKPADNSDPLQSITPRERMVLQLAAEGASNSEIAEKLFISPRTAETHRTN 188 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL + + AIR G I Sbjct: 189 LLRKLGLQTQTDLVRFAIRKGLI 211 >gi|311113859|ref|YP_003985081.1| DegU family transcriptional regulator [Rothia dentocariosa ATCC 17931] gi|310945353|gb|ADP41647.1| transcriptional regulatory protein DegU [Rothia dentocariosa ATCC 17931] Length = 241 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ RE L+L G ++ EI+ L LS T+ ++ KLDA +R+QA+ A Sbjct: 178 QTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLSKLDARDRVQAVIMAYEA 237 Query: 232 GYI 234 G + Sbjct: 238 GIV 240 >gi|302552999|ref|ZP_07305341.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470617|gb|EFL33710.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +++ L +A +LTERET L L G ++ EIAE+L ++ T+ ++ VKL Sbjct: 141 LSETPRLMPSAQAAYGDLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKL 200 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA A + Sbjct: 201 GLRDRTQAAVFAYEARLV 218 >gi|238027839|ref|YP_002912070.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237877033|gb|ACR29366.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 250 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 9/232 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + L + + + FA + + +R L + Sbjct: 20 EHAPDRAALRTIVTRLIRPLGGERFAFLLMPADGAAHQRLDDDAVLTDAAPGWLAGYRER 79 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + P SI + A + P L Sbjct: 80 RGFDADPGIAYARRASTPTTAGSI---APQTDGQLALRTHDAAHGFGAKLIVPAHLPTLN 136 Query: 129 NGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G V++ + +++ ++ ++ + LTERET L Sbjct: 137 LGGVLYVGSGAPAREAEPALHAKRMLFRLIANELLDWHARQIRRDAARSLALTERETGIL 196 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L GYT+ IA++L ++V TV Y K + + +A G + Sbjct: 197 RLLRSGYTAHNIAKELSVAVPTVYGYYKRLNEKFSVNHISLTVKRAATLGLL 248 >gi|316985109|gb|EFV64062.1| transcriptional regulatory protein degU [Neisseria meningitidis H44/76] gi|325200119|gb|ADY95574.1| transcriptional regulatory protein degU [Neisseria meningitidis H44/76] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|313895153|ref|ZP_07828710.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320529859|ref|ZP_08030936.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] gi|312976048|gb|EFR41506.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320137877|gb|EFW29782.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] Length = 223 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Query: 146 IIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + E V D + K+ S LT RE L G ++++I + LGLS Sbjct: 130 LAERLFGSTAVYGDVSRMAKEIWDESRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEK 189 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L S KL +R QA+ ++ + Sbjct: 190 TVKNHLTSIFHKLKVNDRTQALVYVLKNKIV 220 >gi|300855110|ref|YP_003780094.1| putative regulatory protein [Clostridium ljungdahlii DSM 13528] gi|300435225|gb|ADK14992.1| predicted regulatory protein [Clostridium ljungdahlii DSM 13528] Length = 885 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L L G + EIA++L ++ T +++ + KL NRI+A+AKA G I Sbjct: 826 SKREREVLMLIEKGAKNSEIAKRLFITESTAKSHILNIFSKLSVRNRIEAVAKAKEIGII 885 >gi|291006817|ref|ZP_06564790.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 215 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 45/113 (39%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR G + L+ A + A + S+ LTERE Sbjct: 103 VRRGARGYVVKDVDTTELVRAIRAVARGESAFDSRSAAAMVHSMNNRSSEPELTERELGV 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ +I +L +S T ++ + KLD R +A+ +A + G I Sbjct: 163 LRLLAAGSSNRQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 215 >gi|255324096|ref|ZP_05365220.1| response regulator, two-component system [Corynebacterium tuberculostearicum SK141] gi|255298797|gb|EET78090.1| response regulator, two-component system [Corynebacterium tuberculostearicum SK141] Length = 212 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + +LT RE LQL G ++ +I + L LS TV ++L KL +R Sbjct: 140 RLMTRVRTPRTSLTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSR 199 Query: 222 IQAIAKAIRFGYI 234 A+A A G + Sbjct: 200 TSAVAAAREQGVL 212 >gi|241765736|ref|ZP_04763682.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241364396|gb|EER59519.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 301 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 45/151 (29%), Gaps = 16/151 (10%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 +W + ++ G I P+ G + G + Sbjct: 159 RIAWCSPQAALWLDSSFADQAPQARADWLQSASGAGE---IFMPMPGG-GRLGARHLGAS 214 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L + ++ LT RET L G T+ +IA+ Sbjct: 215 GLTES------------MLLLRLAAADTPPRQPEVPLTPRETEVLAWLAKGKTNRDIADI 262 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LG+S TVN +L KL R A A A Sbjct: 263 LGMSPRTVNKHLEHIFEKLGVETRSAATAVA 293 >gi|291295457|ref|YP_003506855.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470416|gb|ADD27835.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 209 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148 ++ + K + + E + Sbjct: 54 DLRMPQMDGVAAIRQVRARFPRVQILVLTTYDTDSKIVRAVEAGATGYLLKDVPREELFR 113 Query: 149 AHGACYQVIT------DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 A C + L + R +A L+ RE L L G++++EIA +L +S Sbjct: 114 AVRLCAKGEAVLSPPVAARLLGRMRGTAEETLSVRELEVLALVAKGFSNKEIARELKISE 173 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L KL +R A+ AI G + Sbjct: 174 ATVKTHLLHTFEKLGVDDRTAAVTVAIERGIL 205 >gi|187779787|ref|ZP_02996260.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC 15579] gi|187773412|gb|EDU37214.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC 15579] Length = 865 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 41/70 (58%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 I + +++ + A LTERE +++ +G ++++I E+L +S+ TV ++ + K Sbjct: 785 FIKNLIDIMEPEKIKAELLTEREKEVMEILFEGASNKQIGERLNISLATVKTHMINIYSK 844 Query: 216 LDAVNRIQAI 225 L NR+QA+ Sbjct: 845 LQVSNRVQAV 854 >gi|184201824|ref|YP_001856031.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183582054|dbj|BAG30525.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 299 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE +L G+G ++ EI ++L LS TV ++ KLDA +R+QA+ A Sbjct: 231 PRLGTLTAREREVFELIGEGCSNGEIMQRLFLSEPTVKTHVSHILSKLDARDRVQAVVIA 290 Query: 229 IRFGYI 234 G + Sbjct: 291 YETGVV 296 >gi|163938916|ref|YP_001643800.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861113|gb|ABY42172.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 214 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A NLT++E L+ GY ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 148 AENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 207 Query: 230 RFGYI 234 I Sbjct: 208 ERKLI 212 >gi|330470066|ref|YP_004407809.1| regulatory protein LuxR [Verrucosispora maris AB-18-032] gi|328813037|gb|AEB47209.1| regulatory protein LuxR [Verrucosispora maris AB-18-032] Length = 228 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 18/161 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + + +A V +I ++ + + Sbjct: 68 LDVHMPDGGGRAVLEAMRRSHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELA 127 Query: 148 EAHGA--------CYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193 A ++ L+ F R LT RE L+L GY +E Sbjct: 128 AAIRRVADGDAVFSPRLAGFVLDAFAARPDAPVADPELDQLTNREREVLRLLARGYAYKE 187 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA +L +S+ TV ++ + KL NR + A + Sbjct: 188 IARELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 228 >gi|325134502|gb|EGC57147.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M13399] gi|325205973|gb|ADZ01426.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M04-240196] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|295689487|ref|YP_003593180.1| LuxR family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431390|gb|ADG10562.1| two component transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 207 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 5/144 (3%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 E ++ + L ++ L +GY++ +S L + I A Sbjct: 67 EAIREIRAQAPDARIIVLTTYAGDVRALS---ALRAGASGYLLKSSLRRELIDT--IRAV 121 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + ++ A L+ERE L+ +G ++EIA L LS TV ++ Sbjct: 122 LGGQRYLHPEVAHDIAVNAIAEPLSEREIDVLKRVANGAANKEIARALSLSEDTVKGHMR 181 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KLD +R QA+ A R G I Sbjct: 182 SIFSKLDVTDRTQAVTVAHRRGII 205 >gi|161870093|ref|YP_001599263.1| two-component system, NarL family nitrate/nitrite response regulator [Neisseria meningitidis 053442] gi|161595646|gb|ABX73306.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria meningitidis 053442] gi|254673916|emb|CBA09700.1| putative two-component system response regulator [Neisseria meningitidis alpha275] Length = 218 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|326329284|ref|ZP_08195609.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325952859|gb|EGD44874.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 231 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 56/161 (34%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + + +++ E + AG A + V+ Sbjct: 67 DLRMRQVDGITATGLVRALPEAPPVLVLTTFDEDELVSGALRAGAAGFILKDSPAEELVM 126 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + + G + R+ LT+RE L+ G+T+ E Sbjct: 127 AVRSVALGDAWLDPAITGRVLATYRSAVAPPASRAVEVSELTDRELEVLRGLASGWTNSE 186 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE+L +S TV +++G KLD +R AI A G + Sbjct: 187 IAERLVISELTVKSHIGRIFAKLDLRDRAAAIVFAYDHGIV 227 >gi|298249219|ref|ZP_06973023.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547223|gb|EFH81090.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1032 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQLA 185 + + F + + + A D RS+ L+ RE S LQL Sbjct: 921 AHLLTRIAPFTTASPDYLQRIQAAIAPAWHTQPDPSTQAGPRSTPYEPLSARERSVLQLM 980 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +GY++++IAE L LS+HTV ++ KL A NR QA+A+A + Sbjct: 981 AEGYSNQQIAEHLILSLHTVKLHVKHLLAKLGATNRTQAVARARALHIL 1029 >gi|297160873|gb|ADI10585.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQ 183 S ++A + A ++I DF ++ LT RET L+ Sbjct: 110 DAPPADLISAVRIVAAGEALLAPSVTRRLIADFARQRPAPRKNFAARRSGLTPRETEVLE 169 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIAE L L+ TV ++G KL +R QA+ A G + Sbjct: 170 LIARGLSNQEIAESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLV 220 >gi|296130230|ref|YP_003637480.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022045|gb|ADG75281.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 239 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 39/96 (40%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + ++ + H A LTERE L L G ++ EI + L Sbjct: 140 IAPSSTRRLLEHLVTALPGDAPAATADPAHQAVAQLTEREREVLVLMARGRSNTEIGQDL 199 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV ++G KL A +R+QA+ A G + Sbjct: 200 FVAEATVKTHVGRILAKLGARDRVQAVVVAYEAGLV 235 >gi|229056740|ref|ZP_04196143.1| Sensory transduction protein ydfI [Bacillus cereus AH603] gi|228720587|gb|EEL72150.1| Sensory transduction protein ydfI [Bacillus cereus AH603] Length = 207 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLTE+E L+ GY ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 144 NLTEKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 203 Query: 233 YI 234 I Sbjct: 204 LI 205 >gi|284029985|ref|YP_003379916.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809278|gb|ADB31117.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ LT RE L L G ++++IAE++ LS T ++ A KL A +R Q + Sbjct: 149 TAGLELLTPREREVLALVAHGLSNDQIAERMVLSPTTAKTHVSRAMSKLQARDRAQLVVI 208 Query: 228 AIRFGYI 234 A + G + Sbjct: 209 AYQSGLV 215 >gi|307150361|ref|YP_003885745.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980589|gb|ADN12470.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 224 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 149 AHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 AH + + + + + A L+ERE L+L +G+++++IAE+L LS T+ + Sbjct: 138 AHKVSHLLKSGSFAVETNTTPKAVTVLSERERLILKLIAEGFSNKKIAEQLFLSPGTIKS 197 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y+ KL +R+QA AKA+R G I Sbjct: 198 YVRMLLNKLSVDDRVQAAAKAVREGLI 224 >gi|195977721|ref|YP_002122965.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868974|ref|YP_002744922.1| response regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|195974426|gb|ACG61952.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225702250|emb|CAX00006.1| response regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 198 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + L+++E + L L G TS+EI++ L LS T+ Y+ S K NR Sbjct: 126 ELMENIVVNPNPLSKQEMNILYLIAQGKTSKEISQILFLSNGTIRNYISSIFNKFGVSNR 185 Query: 222 IQAIAKAIRFGYI 234 ++AI+ A G++ Sbjct: 186 MEAISLAKENGWL 198 >gi|89900655|ref|YP_523126.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345392|gb|ABD69595.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 231 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A +L+ RE L+ G +++EI + G++ TV ++ KLD +R+ A A Sbjct: 166 PAMASLSPRERDILRGIARGASNKEIGREHGIAETTVKIHVQHILRKLDVSSRVHAAVIA 225 Query: 229 IRFGYI 234 G + Sbjct: 226 TEQGLL 231 >gi|254237247|ref|ZP_04930570.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719] gi|126169178|gb|EAZ54689.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719] Length = 496 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 11/138 (7%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITD 159 G + A + ++ S+ E+ + +A +I Sbjct: 348 DRNGLDCLVSAEAVSLNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEK 407 Query: 160 FLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + +LT RE L G +EIA++LGL+ +TV ++ + K Sbjct: 408 LANVRRANAPGTGAELADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAK 467 Query: 216 LDAVNRIQAIAKAIRFGY 233 LD +R +AI A G+ Sbjct: 468 LDVHSRGEAIVWARERGF 485 >gi|254421396|ref|ZP_05035114.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188885|gb|EDX83849.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 152 ACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + LE K LT RET L G+G +++EIA++L LS TV ++ Sbjct: 154 RASSALDTSLEANKVDLPPEVAALTPRETEVLVCIGNGASNKEIAQQLFLSEGTVKNHVT 213 Query: 211 SATVKLDAVNRIQAIAKA 228 S +L +R QA A Sbjct: 214 SVLSRLGLRDRTQAALLA 231 >gi|204929147|ref|ZP_03220290.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321691|gb|EDZ06890.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 215 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDSVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|159901957|gb|ABX10688.1| two-component system response regulator [uncultured planctomycete 8FN] Length = 210 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G T++EIA L +S TV ++ + K+ +R QA A R G Sbjct: 149 PLTAREAEVLKHLTSGKTNKEIANSLTISYETVKEHVQNILRKIGVTDRTQAAVWAFRKG 208 Query: 233 YI 234 + Sbjct: 209 IV 210 >gi|86608341|ref|YP_477103.1| LuxR family transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556883|gb|ABD01840.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 87 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE ++L G T+++IAE+L +S TV+ ++ + K NR+ + A++ Sbjct: 8 ADLLSERELQVIELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTANRVALVRWALQ 67 Query: 231 FGYIC 235 +G IC Sbjct: 68 WGKIC 72 >gi|21224033|ref|NP_629812.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7801256|emb|CAB91120.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 237 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V L AA +LT RET L L G ++ EIA +L ++ HTV ++ Sbjct: 145 LIAEFVHARGSRL---PVPAAGDLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHIN 201 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A G + Sbjct: 202 RLFAKLELRDRAQAVIVAYELGLV 225 >gi|311103299|ref|YP_003976152.1| sensory box protein 1 [Achromobacter xylosoxidans A8] gi|310757988|gb|ADP13437.1| sensory box protein 1 [Achromobacter xylosoxidans A8] Length = 499 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 63/240 (26%), Gaps = 18/240 (7%) Query: 13 SLQELSPRLHL--IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + +L PR + R + + N + + Sbjct: 248 TFNDLEPRRKAESALRHSEQRFATAFRLAPVPMTLSSTTGELLEVNDAFVATTGYDARTL 307 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 +D L + E Q + + Sbjct: 308 ARDEDALAQLWTDPQAYDRAMASLEQGASVRSQEMALRTREGALLDCLVSAAPVSIQDQP 367 Query: 131 YVIFTSEFLMLANEVIIEA-----------HGACYQVITDFLELFKKRSSAARN-----L 174 V+ + + +E VI ++ + + L Sbjct: 368 CVLAAIQDITERKRSEVELMEAIETVMQDTSWFSRTVIEKLAQIRAPQGAPQEQGELADL 427 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G+T EIA L LS +TV ++ + KLD R AI A + G + Sbjct: 428 TPREREILGLMCQGHTDAEIAASLHLSRNTVRNHVAALYSKLDVHRRSAAIIWARQRGIV 487 >gi|182439488|ref|YP_001827207.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780152|ref|ZP_08239417.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468004|dbj|BAG22524.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660485|gb|EGE45331.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 214 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 3/114 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178 +R G Y + L A + H + L + LTERE Sbjct: 98 LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQDDAGTGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARAFVLSEKTVKTHVSNILMKLDVADRTQAALWAVRNG 211 >gi|159900998|ref|YP_001547245.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894037|gb|ABX07117.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 213 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 37/83 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + S +LTERE S L G +++EIA L L+ TV Y+ Sbjct: 127 FLHAEAQRTLMRQSTAPPSLLPSLTERERSVLDGIVGGLSNKEIARSLHLTEGTVKGYVS 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL +R QA AI+ G+ Sbjct: 187 TILTKLAVADRTQAALYAIKHGF 209 >gi|328542259|ref|YP_004302368.1| transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326415691|gb|ADZ72754.1| Transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 255 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 18/187 (9%), Positives = 48/187 (25%), Gaps = 7/187 (3%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 +++++ + F + + L + + Sbjct: 1 MEDVASLEAAFSKALWDLGFREWAYQVIRTDALPDEKPLILTTFSDAWYNHYIDSGYHRV 60 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + + + P W ++ + G+ P+ Sbjct: 61 DPVILNGPNQVAPFTWSAMSFGVDPSPEQRRLFAEAAEFGVGEGVGIPIHGARGALAMAS 120 Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAG 186 S+ + + ++ + H EL + +LT RE CL Sbjct: 121 MVSDHGVEGLDRLMSTVGQDVHLLSLAFHNHARELLALGRMGRTTVSLTPRERECLLWTA 180 Query: 187 DGYTSEE 193 G ++ + Sbjct: 181 AGKSAWQ 187 >gi|289669083|ref|ZP_06490158.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 213 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L L G ++++I L +S TV A++ + KL +R A+ A+R Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALRR 206 Query: 232 GYI 234 G + Sbjct: 207 GIL 209 >gi|256395415|ref|YP_003116979.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361641|gb|ACU75138.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 217 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +++ F + + +A A LT RE +++ G ++EE+A +L + TV Sbjct: 130 IAQRLVGWFRAQPEPQEAAMCPGASELTSREREVVRMVARGMSTEEVARELIIGEATVRT 189 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL +R + ++ A R G I Sbjct: 190 HVYRVRTKLGVRDRAELVSLAYRSGLI 216 >gi|209527179|ref|ZP_03275692.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209492428|gb|EDZ92770.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 208 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%) Query: 145 VIIEAHGACYQVITDFLEL-FKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKL 198 I A+ + L + L+ RE L+L +G ++ EIAE L Sbjct: 113 AIQAAYEGATYLDPQVARLVMEHLKPPLPQSNLGTLSPRELEVLKLMVEGKSNPEIAEAL 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS +T+ ++ KL +R+ A+R G + Sbjct: 173 YLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208 >gi|326382104|ref|ZP_08203797.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199530|gb|EGD56711.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 213 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 12/144 (8%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---- 154 +L + A + L + + +I A Sbjct: 70 RLIREIARRHPGVASLVLTTFLDDDVVVRAVRAGAKGYVVKDVDTTELIRAIRTVSNGGS 129 Query: 155 ----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + L + LT+RE L+L DG ++ E+ L +S TV ++ Sbjct: 130 AFDPRSAAIVLRTVSGEQESTATLTDREHEVLKLLADGKSNAEVGRALFISESTVKFHIR 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL R A+ A + G I Sbjct: 190 NVIRKLGVTKRTDAVYVASKRGLI 213 >gi|315182035|gb|ADT88948.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 207 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + + I + +S A LT RE ++L G G ++ EIA+KL +S Sbjct: 112 DEMWLTRKLAQEYIMHYRAGAPAVTSQAYTKLTRREQQIIKLLGSGASNIEIADKLYVSE 171 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 172 NTVKTHLHNVFKKINAKNRLQALIWA 197 >gi|312130002|ref|YP_003997342.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311906548|gb|ADQ16989.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 219 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT RE ++L + ++ +IAE L ++ TV + + KL + + I +++ Sbjct: 154 KSLTRREKEIIRLVAEDMSNAQIAETLHIAPTTVETHRRNLMKKLGVNSAVALIKLGMKY 213 Query: 232 GYI 234 G I Sbjct: 214 GII 216 >gi|260769964|ref|ZP_05878897.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972] gi|260615302|gb|EEX40488.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972] Length = 223 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + + I + +S A LT RE ++L G G ++ EIA+KL +S Sbjct: 128 DEMWLTRKLAQEYIMHYRAGAPAVTSQAYTKLTRREQQIIKLLGSGASNIEIADKLYVSE 187 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 188 NTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|225021584|ref|ZP_03710776.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305681229|ref|ZP_07404036.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|224945575|gb|EEG26784.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305659434|gb|EFM48934.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 215 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 G ++ S L V A G +VI +F +S++ LT RE Sbjct: 99 AGACGILLKDSSMTDLVEGVRRAALGEGLVDASLTRRVIAEFTRRKSIFTSSSEVLTPRE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 C+ G ++ EIA L L TV +L SA K NR+Q + A R G + Sbjct: 159 LDCVAQLCQGMSNNEIATTLFLEPSTVKTHLSSAMAKTGTHNRVQLVIWAFRNGVV 214 >gi|126736492|ref|ZP_01752233.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] gi|126714030|gb|EBA10900.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] Length = 254 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 71/227 (31%), Gaps = 9/227 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILI 69 + +++EL L + + Sbjct: 14 ARTVEELWDVHSRQMETYGFDRLMYGFTRYRTSTGLGDPQDWVLLSTQSPEYMKVFFDEG 73 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIES---SGQLSVRLEGGLLPFAGIAFPVRL-- 124 Y L + W+ + + +++ S + + + AG R Sbjct: 74 LYYHAPMLRWALANNGACSWRWMMDMNRVDNLTASERRVMEFNKSMDVTAGYTVSFRSIS 133 Query: 125 -GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSC 181 + + A E HG V+ + + L RNLT+R+ Sbjct: 134 ERTKGAIALTAKAGMTQDAVEQTWTKHGEEIIVLNNVMHLKLLTLPYSGERNLTKRQREV 193 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LQ GDG T+++IA LGL+ TV +L A LD QA+ KA Sbjct: 194 LQWVGDGKTTQDIALLLGLTPATVEKHLRLAREALDVETTAQAVLKA 240 >gi|159044099|ref|YP_001532893.1| putative regulatory protein [Dinoroseobacter shibae DFL 12] gi|157911859|gb|ABV93292.1| putative regulatory protein [Dinoroseobacter shibae DFL 12] Length = 260 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 53/211 (25%), Gaps = 9/211 (4%) Query: 27 RIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 +T S + L + + + Sbjct: 36 EYGFDRLFYGHTRFSTPSTYADRHDALILSSLPQGYVERYLREGHYRNIPMIRWAEKNDG 95 Query: 86 PIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFPVRLGF-HKNGYVIFTSEF--L 139 W + + + ++ G + R + Sbjct: 96 ACSWSEVYARLHPDEMTPGTRKALGTRQAFGIENGYSISFRNLCQGGFAAISLVGREGLS 155 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEK 197 + I + GA ++ L + R LT R+ L+ G T EI Sbjct: 156 QADLDKIWASRGAEIELANRVFHLVVSSLPSRRPNRLTPRQREVLEWVAHGKTVPEICLL 215 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +G TV +L A ++A QA+ +A Sbjct: 216 IGRKQATVEKHLRLAREAMNAQTTAQAVLRA 246 >gi|328881870|emb|CCA55109.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 229 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +R+ + + ++A A G + + + +R +A LT RE Sbjct: 118 IRIAHAGEALLSPAATKGLIAT---FLAQGPGAEAVGEAGRARSERLAA---LTAREREV 171 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EIAE+L +S TV ++ A KL A +R Q + A G + Sbjct: 172 LVLVAGGLSNDEIAERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 224 >gi|298246526|ref|ZP_06970332.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554007|gb|EFH87872.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 10/121 (8%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD---FLELFKKRSSAARN-- 173 P+ + S + H ++ + ++ S+ A+ Sbjct: 108 CLPLHASRTTLHQALTASVHKET-----LLQHALVRSLLERIEGATPVEERSSAQAQRVD 162 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++EIA L +S TV +L + KL +R A+A A++ G Sbjct: 163 LTERELEVLTCVARGQRNKEIATYLSISEPTVKTHLANIYFKLQVDSRASAVAVAMKRGL 222 Query: 234 I 234 + Sbjct: 223 L 223 >gi|283782494|ref|YP_003373249.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440947|gb|ADB19389.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 210 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 7/120 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAAR---NL 174 R + I AH ++ +R L Sbjct: 91 ARAVALGAAGFLMKGSTKADVLSAITRAHTGLPPENESLMGRVRNTMARRRPTYDEEIPL 150 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+ G ++ EI L +S+ TV ++ + KL+A +R +A A++ G + Sbjct: 151 TNREVQVLRHVALGLSNREIGRSLDISIETVKEHVQNILRKLEAGDRTEAAVWAVKKGLV 210 >gi|227834238|ref|YP_002835945.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183272|ref|ZP_06042693.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227455254|gb|ACP34007.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 212 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + + L V A G +L + + +LT RE L+L Sbjct: 104 AGAVGYLLKDAPPVELLAAVRSAAEGDSALSPVVADKLMTRVRTPRTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +L LS TV ++L KL +R A+A A G + Sbjct: 164 AAGSSNREIGVELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212 >gi|284031067|ref|YP_003380998.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810360|gb|ADB32199.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 9/149 (6%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHK--NGYVIFTSEFLMLANEV 145 + + AG + + R +L E Sbjct: 74 DGLDPAPRVLVVTTFENDDYVYDALRAGASGFLLKRTPPDDIIAAIRTVAGSESLLFPEA 133 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 I A + + + A +LTERE L+L G ++ EIA +L L V T+ Sbjct: 134 IRGLALAHAE-----QQPRQFTGLARYDLTEREQEVLRLMAKGLSNAEIATELVLGVQTI 188 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL A +R QA+ A G++ Sbjct: 189 KTHVANLLGKLGARDRTQAVILAYESGFV 217 >gi|170781406|ref|YP_001709738.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155974|emb|CAQ01108.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 224 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +A + A G ++ + + L+ RET L L G T+ IA +L Sbjct: 120 RAVARGEVALAPGIAAALVRQVARPAAEPAGPTPTLSPRETQVLALVAGGRTNARIALEL 179 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV +L KL +R +A+ A+ G + Sbjct: 180 HVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215 >gi|72162981|ref|YP_290638.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916713|gb|AAZ56615.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 233 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 17/160 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + ++ R+ +A V VI ++ + Sbjct: 74 LDVHLPGGGGIEVLRRILPKHPEIRFLALSVSDAAEDVIGVIRAGARGYVTKTISGTELA 133 Query: 148 EAH------------GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEI 194 +A V+ F LT+RE L+L GY +E+ Sbjct: 134 DAIVRVADGDAVFSPRLAGFVLDAFAATDAPPVDPELDRLTQREREVLRLIARGYAYKEV 193 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L +SV TV ++ S KL NR + A + Sbjct: 194 ARELFISVKTVETHVSSVLRKLQLSNRHELSRWATARKLV 233 >gi|327438509|dbj|BAK14874.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 204 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE+ L+L +G T++EIA +L LS TV Y+ KL NRI+AIA+ G Sbjct: 139 PLTERESQVLELVAEGKTTKEIAAELYLSAGTVRNYISVILDKLGVGNRIEAIARFKEKG 198 Query: 233 Y 233 + Sbjct: 199 W 199 >gi|312960211|ref|ZP_07774722.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] gi|311285433|gb|EFQ64003.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] Length = 219 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 55/208 (26%), Gaps = 8/208 (3%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79 L + A A Y ++ R +L+ D D D + Sbjct: 14 LQAFTQLVPASQAAFYCVD-RHLQARDFRLLGMSGEMHRDYLDNYRQF-----DPLQPRN 67 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 S L ++ + + + + Sbjct: 68 CLSTGLAVVPLGLAMARQPLRDSRRYRDFLARYGVVDVVEIVAHRADQPQAAISLLRTAE 127 Query: 140 MLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A QV+ + LT +E L G +++++A+ L Sbjct: 128 QGVFTLDQLAQLNALQVMLQMAVANMQPADDGLAGLTPKERQIAWLLRQGASNKQLAQAL 187 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + T+ +L K +R + +A Sbjct: 188 DVGLPTIKTHLIHLFRKTGVSSRTELVA 215 >gi|325144605|gb|EGC66904.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240013] Length = 218 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|260437679|ref|ZP_05791495.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] gi|292809905|gb|EFF69110.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] Length = 218 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +NLT+RE L L GY +++I+ +L ++ TV ++ S K++ +R Q Sbjct: 141 EDDPEERIKNLTKREIEVLLLISKGYVNKDISNELKITERTVKNHVSSIFRKINVNDRTQ 200 Query: 224 AIAKAIRF 231 A A++ Sbjct: 201 AAVFAVKN 208 >gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 219 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 E Q + + K++ LT E A G+T+++I+E L +S TV Sbjct: 126 RAEMQRLAAQANVEQM----KQAPEPLPLTPAEMRVFWEAVQGWTNKQISEHLYVSPRTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L S KL+ NR Q + A GY Sbjct: 182 QTHLSSILNKLNLENRSQLVRFAYENGY 209 >gi|324997378|ref|ZP_08118490.1| putative two-component system response regulator [Pseudonocardia sp. P1] Length = 239 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + A LTERE L L G ++ EIA +L L TV ++ + KLD +R+Q Sbjct: 163 EPGAGPAGALTERERQVLGLVAAGLSNAEIAARLVLGGTTVKTHVSNLLTKLDLRDRVQL 222 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 223 VVFAYEHGLV 232 >gi|309378607|emb|CBX22785.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 218 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 152 SLTPREMEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|332560443|ref|ZP_08414761.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N] gi|332274241|gb|EGJ19557.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N] Length = 207 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 18/181 (9%) Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 + + D + S W ++ + Sbjct: 42 FPSSWIRHYTVQAFGLRDPLIRWAASANGAARWSAVHLPDEAG-----VLAAYRRHGLRF 96 Query: 117 G--IAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G I P R + + +F + N I ++ + Sbjct: 97 GCVIGLPARTARSRKRSFGLFARNDREMTNHEIATLRATLAELH----------APNRDA 146 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT + L++ +G +EIA +LG++ V A +A +L A +QA A R G Sbjct: 147 LTPSQAEVLRMLSEGVRYKEIAHRLGITEGAVKARFKAACDRLGARTAVQAANIAQRRGL 206 Query: 234 I 234 + Sbjct: 207 L 207 >gi|291443382|ref|ZP_06582772.1| two-component system [Streptomyces roseosporus NRRL 15998] gi|291346329|gb|EFE73233.1| two-component system [Streptomyces roseosporus NRRL 15998] Length = 207 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 11/153 (7%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148 + R+ LP + + L + + Sbjct: 55 DLRMPGGGGVESIRRIRAAGLPCRVVVLTTYESDSDILRAVEAGASGYLLKDLGRGELAD 114 Query: 149 AHGACYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A A + + L + L+ERET L+L +G T+ EI KL + Sbjct: 115 AIRAAARGETVLAPTVATRLVDRLRGVPELPRLSERETQVLRLVAEGCTNAEIGRKLFIG 174 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L KL +R A+ A+R G + Sbjct: 175 ESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGLL 207 >gi|229822019|ref|YP_002883545.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567932|gb|ACQ81783.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 211 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQL 184 GY++ + L V A G L + R A L+ RE L+L Sbjct: 96 AGATGYLLKDAPRDELFRAVEAAAQGQAVLSPAVATRLMGQMRQPAPEPLSRRELEVLEL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ + A+ L +S TV +L A KL +R A+A A GY+ Sbjct: 156 VARGSTNRDAAKHLFISEATVKTHLLHAYAKLGVNDRAAAVATAFSRGYL 205 >gi|16330518|ref|NP_441246.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1653009|dbj|BAA17926.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 226 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G +++EIA++L ++ TV ++ + KL+ +R QA AI Sbjct: 163 PLTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERR 222 Query: 233 YI 234 + Sbjct: 223 LV 224 >gi|89073186|ref|ZP_01159725.1| putative nitrate/nitrite response regulator protein [Photobacterium sp. SKA34] gi|89051139|gb|EAR56596.1| putative nitrate/nitrite response regulator protein [Photobacterium sp. SKA34] Length = 208 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 11/134 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157 + + + + V V+ + +IE + Sbjct: 68 LIAMRDEGILACIVILTVSDSRSDIKTVLNAGADGYLLKDTEPDELIEQLKSALCGGKAY 127 Query: 158 TDFL--ELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +D + L + LTERET LQ G + +IAE+L +S TV ++ S Sbjct: 128 SDIVKESLESPNTPTNILSQLTERETQILQEVAKGQRNRQIAEQLFISEATVKVHMKSLL 187 Query: 214 VKLDAVNRIQAIAK 227 KL +R A Sbjct: 188 KKLQVKSRTAATIL 201 >gi|325283103|ref|YP_004255644.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314912|gb|ADY26027.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 233 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 Q+ + + R LT RE+ L L G +++EIA +LG+S TV + Sbjct: 147 ALATQLRAIIADPTQDRLPRVEVPRLTPRESEVLPLLAQGLSNKEIARELGVSPDTVKDH 206 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L KLDA +R +A+++A G + Sbjct: 207 LARMYGKLDACDRTEAVSRARTIGLL 232 >gi|293405659|ref|ZP_06649651.1| transcriptional regulator NarP [Escherichia coli FVEC1412] gi|298381341|ref|ZP_06990940.1| two-component system [Escherichia coli FVEC1302] gi|300819110|ref|ZP_07099312.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 107-1] gi|300822646|ref|ZP_07102784.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 119-7] gi|300897746|ref|ZP_07116140.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 198-1] gi|300902154|ref|ZP_07120155.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 84-1] gi|300926301|ref|ZP_07142103.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 182-1] gi|300930429|ref|ZP_07145837.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 187-1] gi|300935141|ref|ZP_07150171.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 21-1] gi|300950044|ref|ZP_07163991.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 116-1] gi|300956848|ref|ZP_07169109.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 175-1] gi|301022495|ref|ZP_07186371.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 69-1] gi|301307196|ref|ZP_07213220.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 124-1] gi|301647050|ref|ZP_07246881.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 146-1] gi|309793076|ref|ZP_07687504.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 145-7] gi|331642822|ref|ZP_08343957.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H736] gi|331673712|ref|ZP_08374475.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA280] gi|331678147|ref|ZP_08378822.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H591] gi|332278650|ref|ZP_08391063.1| transcriptional regulator NarP [Shigella sp. D9] gi|291427867|gb|EFF00894.1| transcriptional regulator NarP [Escherichia coli FVEC1412] gi|298278783|gb|EFI20297.1| two-component system [Escherichia coli FVEC1302] gi|300316358|gb|EFJ66142.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 175-1] gi|300358520|gb|EFJ74390.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 198-1] gi|300397493|gb|EFJ81031.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 69-1] gi|300405747|gb|EFJ89285.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 84-1] gi|300417670|gb|EFK00981.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 182-1] gi|300450534|gb|EFK14154.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 116-1] gi|300459636|gb|EFK23129.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 21-1] gi|300461682|gb|EFK25175.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 187-1] gi|300524846|gb|EFK45915.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 119-7] gi|300528263|gb|EFK49325.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 107-1] gi|300837606|gb|EFK65366.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 124-1] gi|301074782|gb|EFK89588.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 146-1] gi|308123362|gb|EFO60624.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 145-7] gi|315252918|gb|EFU32886.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 85-1] gi|324020961|gb|EGB90180.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 117-3] gi|331039620|gb|EGI11840.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H736] gi|331068985|gb|EGI40377.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA280] gi|331074607|gb|EGI45927.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H591] gi|332101002|gb|EGJ04348.1| transcriptional regulator NarP [Shigella sp. D9] Length = 225 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 81 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAATIL 217 >gi|254491566|ref|ZP_05104745.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224463044|gb|EEF79314.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 214 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ L + L++RE +L +G T +IA+ L LS TV + S Sbjct: 133 IAQQLAMQKLTGSEN---PIDVLSQREFEVFRLLAEGKTVNDIADILSLSPKTVGTHHTS 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ N + AIR G + Sbjct: 190 IKQKLNVSNSAELARLAIRSGLL 212 >gi|282857278|ref|ZP_06266517.1| DNA-binding response regulator, LuxR family [Pyramidobacter piscolens W5455] gi|282584883|gb|EFB90212.1| DNA-binding response regulator, LuxR family [Pyramidobacter piscolens W5455] Length = 216 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLE 162 + I ++ G +S+ L LA + + +I D+L Sbjct: 81 VLSMHGDKNLIVESLKAGARGYVLKECSSQELCLAIQTVANGQYYLTPAILSTLIGDYLR 140 Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + L+ERE L+L G +++IAE+L +S +TV+ + KL + Sbjct: 141 LTENEEQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSISKNTVDTHRRHILDKLGCNSM 200 Query: 222 IQAIAKAIRFGYI 234 + AIR GY+ Sbjct: 201 AELTRYAIREGYL 213 >gi|260770204|ref|ZP_05879137.1| DNA-binding response regulator LuxR family [Vibrio furnissii CIP 102972] gi|260615542|gb|EEX40728.1| DNA-binding response regulator LuxR family [Vibrio furnissii CIP 102972] Length = 209 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERET 179 V+ G +S+ L+LA N+V C Q L +K + L++RE+ Sbjct: 94 VKAGAKGYVLKDVSSDELVLAINQVAQGRSYLCPQASDKLLAQFNEKPAERDETLSKRES 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G +++IA+ L +SV TV + KL A + + A+ G + Sbjct: 154 DVLKAIVSGCGNKDIADTLHISVRTVETHRLRIKKKLGASSTAALVKLALEKGLV 208 >gi|260777127|ref|ZP_05886021.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC BAA-450] gi|260606793|gb|EEX33067.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC BAA-450] Length = 206 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 38/56 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 NLT+RE ++L G G ++ +IA++L +S +TV +L + K++A NR+QA+ A Sbjct: 141 NLTKREKEIMRLLGHGASNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 196 >gi|258653548|ref|YP_003202704.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556773|gb|ACV79715.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 223 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 34/79 (43%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + LTERE + L G +++EIA +L LS T ++ A K Sbjct: 142 AAPGAATPDEAAGPDLSVLTEREREIVGLVAQGLSNDEIAARLYLSPLTAKTHVNRAMTK 201 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L A +R Q + A R G + Sbjct: 202 LGARDRAQLVVLAYRAGLV 220 >gi|223937482|ref|ZP_03629386.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893833|gb|EEF60290.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ F E+ + L++RE LQ GYT++EIAE+L +SV+TV +L Sbjct: 130 IARRVVQSFREV-PREPVKNEKLSQREEEILQQLSKGYTTKEIAERLSVSVNTVRTHLQH 188 Query: 212 ATVKLDAVNRIQAIAK 227 KL +R +A+ K Sbjct: 189 IYEKLHVRSRTEAVVK 204 >gi|126732495|ref|ZP_01748294.1| autoinducer-binding transcriptional regulator, LuxR family protein [Sagittula stellata E-37] gi|126707134|gb|EBA06201.1| autoinducer-binding transcriptional regulator, LuxR family protein [Sagittula stellata E-37] Length = 253 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 10/215 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 + + L N+ + Sbjct: 28 LMDAYGFDRLIYGFTRFLTPNSMGDPNDFVILSNHLPAYRKGFVEGGLYRDAPMVRWALE 87 Query: 83 GLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTS 136 W+ + E+ + Q V AG V + + Sbjct: 88 NEGHCSWRVLAEQITTGALSEKAQKVVAFNVAHKVQAGYTISFKSVSSRAKGAISLTARA 147 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEE 193 E + + HG ++ + + L + LT R+ L+ GDG T ++ Sbjct: 148 EMTQDDADAVWAEHGPDIVLLNNLVHLKILTLPVPLHNQTLTPRQREALEWVGDGKTMQD 207 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 IA+ +GL+ T+ +L A L+ QA+AKA Sbjct: 208 IAQIMGLTQATIEKHLRLARETLNVETTAQAVAKA 242 >gi|153004251|ref|YP_001378576.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027824|gb|ABS25592.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 212 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 19/162 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVI 146 + + + + + + I V G + A ++ Sbjct: 49 LDVTMPELNGLEATREIRASVPDTEIILLTVHDSDQLLGQALDAGARGYVLKEDAARHLV 108 Query: 147 IEAHGACYQVITDFLELFKKRSSAAR--------------NLTERETSCLQLAGDGYTSE 192 ++ +AA +LT+RE L+L G ++ Sbjct: 109 DAIDALSKHAPYVPSRAAERPGNAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNR 168 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A +L +S TV + + KL A + + + AIR G + Sbjct: 169 EVAGQLSISAKTVETHRANVMRKLGASSIVDLVHYAIRNGIV 210 >gi|115358915|ref|YP_776053.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284203|gb|ABI89719.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 243 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 60/230 (26%), Gaps = 21/230 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72 + LH A FA + + +L Sbjct: 12 AADWQRALHACVAAFDA--FASPSAIVFYRLDLSGEPADFQLFGMPESMHRTYLA-RYRM 68 Query: 73 GDDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVR----------LEGGLLPFAG 117 D +G+ ++ + +E S+ + R L G Sbjct: 69 LDPLHPSRCAAGVRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDDAGRTVG 128 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLT 175 +R F + + + L + R LT Sbjct: 129 AFSLLRFEKGDAEGNSTAGRFAPGEVDALARLQPVAEAALAPLLRARRGIHRIDCEERLT 188 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE +L DG +++EIA L L T+ +L KL NR + + Sbjct: 189 YREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 238 >gi|313109516|ref|ZP_07795470.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881972|gb|EFQ40566.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 222 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 14/219 (6%) Query: 16 ELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +L PR + + A Y I+ + +L D Sbjct: 8 DLGPRCMQAFTQVVPASLCVFYRID-----EDCRAHDFQLLRMPAGMHRDYLRH-YRDYD 61 Query: 75 DFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 H + P++ L + + Sbjct: 62 PLQPRHCLASASPVVPLRQGIARQPAEDSALYQGFLRRHGICDVVEVLAHAQQRPVAALS 121 Query: 134 FTSE-----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + F + HG ++ + + LT RE L DG Sbjct: 122 LLRDARLGAFSDQELRQLRALHGL-MELAAQACATPTASAERLQGLTPREREIALLLRDG 180 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +++ +A+ LGL + TV +L + K A +R + + + Sbjct: 181 VSNKCLAQCLGLGLPTVKTHLLNLFRKTGARSRTELVKR 219 >gi|253573801|ref|ZP_04851144.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847329|gb|EES75334.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KRSSAARNLTER 177 GYV+ S L + + + G ++ +F+ + ++ + L+ R Sbjct: 97 GARGYVLKNSPDEQLVSAIRMVHQGGVYIHPKLASSLVREFVSQDQQADENNPYQLLSTR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L GY ++EIAE L +SV TV A+ KL+ +R + + AI+ + Sbjct: 157 EVEILPLVAKGYGNKEIAEMLHISVKTVEAHKAKIMEKLNLKSRPELVEYAIKKKLL 213 >gi|239981400|ref|ZP_04703924.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291453255|ref|ZP_06592645.1| two component response regulator MppU [Streptomyces albus J1074] gi|291356204|gb|EFE83106.1| two component response regulator MppU [Streptomyces albus J1074] Length = 223 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 31/77 (40%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LTERE L +G T+ +IA +L +S TV ++ + K Sbjct: 140 HVTGNRTPGDPAPREEALTEREGEIAALVAEGGTNADIAAELFISPGTVKTHVAAIQRKF 199 Query: 217 DAVNRIQAIAKAIRFGY 233 NR+ +A GY Sbjct: 200 GVRNRVGIAVRAFERGY 216 >gi|218708362|ref|YP_002415983.1| transcriptional regulator [Vibrio splendidus LGP32] gi|218321381|emb|CAV17331.1| transcriptional regulator [Vibrio splendidus LGP32] Length = 215 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT RE ++ G ++ +IA+ L +S TV ++L KL NR+QAIA Sbjct: 149 TPTNVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 208 Query: 228 A 228 A Sbjct: 209 A 209 >gi|196231497|ref|ZP_03130355.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224350|gb|EDY18862.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 216 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARNLTERE 178 GY++ T+ +A + +V+ F R LT RE Sbjct: 101 AGAAGYLLKTAPVEEIARAIRDALAGGAPMNGRIARRVLDMFARFAPTRGDGDYGLTTRE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L+ G T +EIA +L LS HTV+ +L + KL+ R A+AKA++ + Sbjct: 161 TQILEAMVKGRTKKEIAAQLDLSFHTVDTHLRNIYQKLEVNTRTGAVAKALKEKLV 216 >gi|148977874|ref|ZP_01814429.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] gi|145962943|gb|EDK28214.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] Length = 203 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT RE ++ G ++ +IA+ L +S TV ++L KL NR+QAIA Sbjct: 137 TPTNVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 196 Query: 228 A 228 A Sbjct: 197 A 197 >gi|86147858|ref|ZP_01066164.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] gi|85834385|gb|EAQ52537.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] Length = 215 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT RE ++ G ++ +IA+ L +S TV ++L KL NR+QAIA Sbjct: 149 TPTNVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 208 Query: 228 A 228 A Sbjct: 209 A 209 >gi|327439935|dbj|BAK16300.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 + + P+ GY + T ++++EA+ QV + Sbjct: 111 QNSLLVVPITFNHVVVGYFLGTHFHKNFDPQLLMEANLFSSQVGEMLFNHPCYVENNEIK 170 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE ++ GY+S++IA L +S T+ Y+ S K + NR A+A + Sbjct: 171 LSKREFEVMKCVAFGYSSKQIAHLLEISETTIKQYIKSVMSKTNTSNRTHAVAFLFQKRI 230 Query: 234 I 234 + Sbjct: 231 L 231 >gi|291287188|ref|YP_003504004.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290884348|gb|ADD68048.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 245 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 44/86 (51%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A ++T+++ + + L+ RE S L G TS E+A+ L ++ +TVN + Sbjct: 159 ACYLHAHLLTNYVRILSVSNENIIKLSGREKSVLTWLKYGKTSWEVAKILNITENTVNFH 218 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL+A NR A+A AI I Sbjct: 219 IKNIKNKLNATNRQHAVAIAIAKSII 244 >gi|239939951|ref|ZP_04691888.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239986435|ref|ZP_04707099.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 11/153 (7%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148 + R+ LP + + L + + Sbjct: 54 DLRMPGGGGVESIRRIRAAGLPCRVVVLTTYESDSDILRAVEAGASGYLLKDLGRGELAD 113 Query: 149 AHGACYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A A + + L + L+ERET L+L +G T+ EI KL + Sbjct: 114 AIRAAARGETVLAPTVATRLVDRLRGVPELPRLSERETQVLRLVAEGCTNAEIGRKLFIG 173 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L KL +R A+ A+R G + Sbjct: 174 ESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGLL 206 >gi|239931733|ref|ZP_04688686.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440102|ref|ZP_06579492.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342997|gb|EFE69953.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 228 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 41/88 (46%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A +V + R+ +LT RE L G++++EIAE+L +S TV Sbjct: 136 LIARFLAQEVAAGEADRDPARAERLESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVK 195 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL A +R Q + A G + Sbjct: 196 THVNRAMAKLGARDRAQLVVTAYESGLV 223 >gi|293410555|ref|ZP_06654131.1| transcriptional regulator NarP [Escherichia coli B354] gi|293446543|ref|ZP_06662965.1| two-component system [Escherichia coli B088] gi|291323373|gb|EFE62801.1| two-component system [Escherichia coli B088] gi|291471023|gb|EFF13507.1| transcriptional regulator NarP [Escherichia coli B354] Length = 236 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 92 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 151 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 152 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 211 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 212 NLLRKLNVRSRVAATIL 228 >gi|262273889|ref|ZP_06051702.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP 101886] gi|262222304|gb|EEY73616.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP 101886] Length = 224 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+ G ++ EIA+ L +S HTV ++L + K++ NR+QA+ A Sbjct: 157 LTNREQQILRKLVTGASNSEIADSLFVSEHTVKSHLYNIFKKINVKNRVQAVFWA 211 >gi|189424620|ref|YP_001951797.1| LuxR family transcriptional regulator [Geobacter lovleyi SZ] gi|189420879|gb|ACD95277.1| two component transcriptional regulator, LuxR family [Geobacter lovleyi SZ] Length = 199 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 2/144 (1%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + L + + + E E Sbjct: 55 LDISMPGLDGLSAVAALRREGDLTPVVILTTHDDPLMLERAKCSGANGYVNKEFAFEQLL 114 Query: 152 ACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + + D L ++ + A + LT+RE ++L G +S I E LG+S TV+ + Sbjct: 115 LSLRKVADGTVLLEESAPATSSTALTDREREVIRLVACGMSSRLIGETLGISNKTVDNHR 174 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 + KL + + A++ G Sbjct: 175 TNIMGKLHIHTTAELVRYAVKLGL 198 >gi|17549201|ref|NP_522541.1| nitrate/nitrite response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431453|emb|CAD18131.1| probable nitrate/nitrite response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 222 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE ++ G +++EIA L ++ TV ++ + KL+ +R+Q A+ Sbjct: 157 ADRLTPREREIVRGLARGESNKEIARALDVAESTVKIHVQNILKKLNLTSRVQVAVYAVE 216 Query: 231 FGY 233 G Sbjct: 217 HGL 219 >gi|333028557|ref|ZP_08456621.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332748409|gb|EGJ78850.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 215 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179 L +G+++ + + + V + A G L + + LT RE Sbjct: 92 LRAGADGFLLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADQHGGRAPAPFPGLTGREG 151 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G++ Sbjct: 152 EVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 206 >gi|311031073|ref|ZP_07709163.1| two-component response regulator [Bacillus sp. m3-13] Length = 213 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE S LQL G+G ++EIAE L LS+ TV ++ KL +R Q AIR G Sbjct: 152 ELTSRERSILQLVGEGKNNQEIAEALYLSIGTVKNHVTVILQKLGLRDRTQLAIFAIRNG 211 Query: 233 YI 234 + Sbjct: 212 VV 213 >gi|161520286|ref|YP_001583713.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353536|ref|YP_001949163.1| putative regulatory protein [Burkholderia multivorans ATCC 17616] gi|221200550|ref|ZP_03573592.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221206230|ref|ZP_03579244.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|160344336|gb|ABX17421.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337558|dbj|BAG46627.1| putative regulatory protein [Burkholderia multivorans ATCC 17616] gi|221174242|gb|EEE06675.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221179891|gb|EEE12296.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 298 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 18/244 (7%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + A + L Sbjct: 57 TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PSTYRGDYV 114 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL----------SVRLEGGLLPFA 116 D +PI+W Q + ++ + Sbjct: 115 RHNHHDVDPRTLGARVCNMPIVWDLQQLRRDHQPRDDDASDAPAALDGFLQTMQDDGMCS 174 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSA 170 GI + + + + ++ FT+ + G + R A Sbjct: 175 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATVEQALSIGLSVHKFASPQLIATSRERA 234 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E L +G + +EI +L S H V+ +L + NRIQ + Sbjct: 235 VNGLTPFEQELLIGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTSK 294 Query: 231 FGYI 234 I Sbjct: 295 LELI 298 >gi|94497651|ref|ZP_01304219.1| putative transcription regulator protein [Sphingomonas sp. SKA58] gi|94422868|gb|EAT07901.1| putative transcription regulator protein [Sphingomonas sp. SKA58] Length = 208 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 11/183 (6%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIA 119 + + P + T + + + L + A I Sbjct: 22 RWWEVPQLALSSPIVHACRVEAEPFWCNAHGFRTRLPNPLLDLIDLHDFRIRAMTAAAIV 81 Query: 120 FPVRLGFHKNGYVIFTSEFLM-----LANEVIIEAHGACYQVITDFLE---LFKKRSSAA 171 P+ L F + G F S A +A + + A+ Sbjct: 82 VPIHLPFGQIGAASFLSPEPDTNDLSDAYSSAADALAVLARAFVQSYSKVTARARHDLAS 141 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE CL+ A G T+EEI LGL TV ++ SA+VKLDAVNR Q + KA + Sbjct: 142 ISLTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRSASVKLDAVNRDQTMFKAAQL 201 Query: 232 GYI 234 G++ Sbjct: 202 GFL 204 >gi|56415066|ref|YP_152141.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363995|ref|YP_002143632.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129323|gb|AAV78829.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095472|emb|CAR61035.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 227 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I I + Y +N+ L + LHN + D Sbjct: 18 LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +I + + I +R G + + Sbjct: 70 SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E + A + + ++ ++ LT +E + + +G +++ IA +L + Sbjct: 129 FSSEECLRAQAVQPLLGLAIHDSLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ TV +L + K + +NR + +++ Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215 >gi|313668365|ref|YP_004048649.1| two-component system response regulator [Neisseria lactamica ST-640] gi|313005827|emb|CBN87281.1| putative two-component system response regulator [Neisseria lactamica 020-06] Length = 218 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|281415470|ref|ZP_06247212.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 202 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + +A+ V A G L + S + L+ERE L+L Sbjct: 92 NAGAAGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLEL 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ A++L +S TV +L KL NR +A+ +A R I Sbjct: 152 IARGATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 201 >gi|289811480|ref|ZP_06542109.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 115 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 5/115 (4%) Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179 G++ F+ L ++ EV + + ++ L + ++RE Sbjct: 1 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREK 60 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 61 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 115 >gi|318060416|ref|ZP_07979139.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078887|ref|ZP_07986219.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 219 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179 L +G+++ + +A+ V + A G L + + LT RE Sbjct: 96 LRAGADGFLLKRARPAEIAHAVRVVAAGDSLLFPAAVRRLADHHGGRAPAPFPGLTGREG 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G++ Sbjct: 156 EVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210 >gi|320105355|ref|YP_004180945.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319923876|gb|ADV80951.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 217 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +L+ RET L+ G ++ +IA+ L +S TV ++ S KLDA +R QA+ A++ Sbjct: 152 ANDLSPRETEVLRSVAQGRSNRQIADALLISEDTVKGHMKSIMAKLDAGDRTQAVIIAMK 211 Query: 231 FGYI 234 G++ Sbjct: 212 RGFL 215 >gi|329939783|ref|ZP_08289084.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329301353|gb|EGG45248.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 208 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Query: 161 LELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L L S A LT RE+ + L G ++ EIAEK+ ++ TV +++ Sbjct: 114 LHLLPDIVSPAPATGLLATLTPRESEVIVLLAQGKSNVEIAEKMSITTATVRSHVHHLLR 173 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL R QA+A A G I Sbjct: 174 KLGVGTRAQAVAFAYESGLI 193 >gi|330807579|ref|YP_004352041.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375687|gb|AEA67037.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 911 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 5/111 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEA--HGACYQVITDF---LELFKKRSSAARNLTERETSCLQ 183 + E E +++A ++ + ++ L+ RE + LQ Sbjct: 800 QPFEWLFGEHREWLREQLLQAPPSTLREHLLERLPSTVAQPADPAAPVETLSSRERAVLQ 859 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EI+E+L +S+HTV + KL R QA+A+A G + Sbjct: 860 LIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKALGLL 910 >gi|163746352|ref|ZP_02153710.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161380237|gb|EDQ04648.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 251 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 12/206 (5%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F Y ++L P L N + + + + W + Sbjct: 38 GFTRYRTPTSLGDPA---DFVILSNQSSEYLKGYLHSGLYFHAPMVRWALNNEGACSWGA 94 Query: 92 IQEET---VIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEV 145 ++E + + + + AG + + + Sbjct: 95 LREIALGEGLTETESRVIEFNRSMDVTAGYTISFRSISARSKGAIALTARPGMSQADVDA 154 Query: 146 IIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 I HG Q++ + L R+LT R+ L+ GDG T+++IA +GL+ Sbjct: 155 IWTEHGRDIQLMNEIAHLKILSLPYSSPNRSLTRRQLEVLEWVGDGKTTQDIALLMGLTA 214 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228 TV +L A L QA+ KA Sbjct: 215 ATVEKHLRLAREALSVETTAQAVLKA 240 >gi|94969470|ref|YP_591518.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551520|gb|ABF41444.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 215 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 45/88 (51%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I A A + I + + +LTERE L+L G+G +++ IA++L + TV Sbjct: 121 IRAVHAGQKRIPAEIAAELADHAVDDHLTERELDVLRLIGEGNSNKLIADQLSIGEATVK 180 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++ + KL A +R A+ +R G I Sbjct: 181 SHVTNILSKLGASDRAHAVTIGLRRGII 208 >gi|54024206|ref|YP_118448.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015714|dbj|BAD57084.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 L A + + G + L+ + + A + + + Sbjct: 100 FLDDALVLEAIHRGAKGYVLKDVDTTALVSSIRAVARDESAFDPRSASVMMRTIRTAPEE 159 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RET L+L G ++ EI +L +S TV ++ + KL A R A+ +A + Sbjct: 160 PTLTDRETKVLELLARGMSNREIGGRLYISETTVKFHVRNIMRKLSASTRAGAVYEASKL 219 Query: 232 GYI 234 G I Sbjct: 220 GLI 222 >gi|332885458|gb|EGK05707.1| hypothetical protein HMPREF9456_02509 [Dysgonomonas mossii DSM 22836] Length = 245 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 41/67 (61%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS A +LT RE + LQL +G S+EI+E+L +SVHTVN + KLD N ++A+ Sbjct: 178 SSKASDLTTREIAVLQLIKEGLLSKEISEQLFISVHTVNTHRQRILEKLDVNNSMEAVKY 237 Query: 228 AIRFGYI 234 A G I Sbjct: 238 ASALGLI 244 >gi|327330300|gb|EGE72049.1| nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL097PA1] Length = 210 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMARMRSPRTSLTARELDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|312876261|ref|ZP_07736247.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] gi|311796907|gb|EFR13250.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] Length = 215 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE ++L GY+++EIA L +S TV Y+ S KL NR Q Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIY 209 >gi|312792317|ref|YP_004025240.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179457|gb|ADQ39627.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 215 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE ++L GY+++EIA L +S TV Y+ S KL NR Q Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIY 209 >gi|260433688|ref|ZP_05787659.1| autoinducer-binding transcriptional regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417516|gb|EEX10775.1| autoinducer-binding transcriptional regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] Length = 251 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 67/226 (29%), Gaps = 11/226 (4%) Query: 13 SLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIE 70 +L+EL + + L N+ + D Sbjct: 16 TLEELWASHTEQMMQ-FGFDRLLYGHTQYRTQTSLGDPEDFVILTNHCQEYMDGFLRDGL 74 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + L + W I++ + + G Sbjct: 75 YFHAPMLKWALNHEGAASWNMIRDMMSSGAMTDQERKVYDFNRSNGISVGYTISFTSVSV 134 Query: 128 KN-GYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCL 182 ++ G + S + I HG ++ + L R LT+R+ L Sbjct: 135 RSKGAISLASLTRSQEELDQIWAKHGDDILLMNNVAHLKILTLPYHPPNRALTKRQREAL 194 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + GDG T+++IA +GL+ TV +L A L QA+ KA Sbjct: 195 EWVGDGKTTQDIALLMGLTTATVEKHLRLAREALSVETTAQAVLKA 240 >gi|254505671|ref|ZP_05117817.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] gi|219551324|gb|EED28303.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] Length = 222 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 38/56 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 NLT+RE ++L G G ++ +IA++L +S +TV +L + K++A NR+QA+ A Sbjct: 157 NLTKREKEIMRLLGHGASNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212 >gi|405947|gb|AAA16411.1| narP [Escherichia coli] Length = 225 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 81 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAATIL 217 >gi|302341508|ref|YP_003806037.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638121|gb|ADK83443.1| two component transcriptional regulator, LuxR family [Desulfarculus baarsii DSM 2075] Length = 225 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ +F+++ + A LT+RE L+L +G + EIA+KL LS TV Sbjct: 132 VAGHIVDEFVKMPDMTPAPAQDSQERLTDRERQLLRLVVEGLPNREIADKLCLSQKTVEN 191 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL + I + AI G + Sbjct: 192 HRANIMRKLGRHDVIGLVKYAIATGLV 218 >gi|312194246|ref|YP_004014307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311225582|gb|ADP78437.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 245 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 4/113 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V + F +V + LT+RE Sbjct: 126 VAPNVTRRLLDAFAHHLPDPDASADGGPDRPAGRVANRRTAGTDR----LDRLTDRERDV 181 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA +L LS TV ++G KL+ +R+QA+ A G I Sbjct: 182 LGEVAAGLSNAEIAARLVLSEATVKTHVGRILAKLELRDRVQAVVFAYETGLI 234 >gi|291302714|ref|YP_003513992.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571934|gb|ADD44899.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 218 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 37/80 (46%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +VI F + + LT+RET L L G ++ EIA +L +S T ++ Sbjct: 134 RVIESFADTTATDAPDIDGLTDRETEVLGLVARGLSNAEIAGRLSMSPATAKTHVNRTMT 193 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A +R Q + A G + Sbjct: 194 KLGARDRAQLVIFAYETGLV 213 >gi|78062461|ref|YP_372369.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77970346|gb|ABB11725.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 215 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 36/78 (46%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L K S LT RE L+ +G ++ IA LG++ TV +LG+ K Sbjct: 133 AQRMIGALRKPPLSPFAALTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSK 192 Query: 216 LDAVNRIQAIAKAIRFGY 233 L +R QA+A A R G Sbjct: 193 LHLSDRTQAVALAWREGL 210 >gi|41409373|ref|NP_962209.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398193|gb|AAS05823.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 221 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 19/233 (8%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + T + + + + FA+ + +R+ + +D Sbjct: 2 TDDATPTTVMVVDDHPIWRDAVARDLAESGFAVVATADGVTAAQRRAGVVRPDVVVMDM- 60 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 +P+ L S + ++ S + + V+++ + A +A V Sbjct: 61 QLPDGDGAQATAAVLAVSPSSRVLVLSASDERDDVLQAVKAGAAGYLVKSASKAELAQAV 120 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETS 180 + V+ ++ + + LT+RET Sbjct: 121 TDTAAGRAVFTPS----------------LAGLVLGEYRRIAQSKDDGPTRPRLTDRETE 164 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 165 VLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|331698378|ref|YP_004334617.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953067|gb|AEA26764.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 212 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 10/159 (6%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----ML 141 P+ + + + L + I Sbjct: 52 PVDVVLMDLRMPVMGGVEAIRELRRSGSAPRVLVLTTFDTDRDVLPAIEAGATGYLLKDT 111 Query: 142 ANEVIIEAHGACYQ------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + ++ A A Y+ + + R+ L+ RE LQL G T+ E A Sbjct: 112 PRDELLRAVRAAYRGEAVLSPAVAGRLMGQVRTPTEEALSSRELEVLQLVAAGATNREAA 171 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S T+ +L KL+ +R A++ A R G + Sbjct: 172 RRLFISEATIKTHLLHIYAKLEVRDRASAVSAAYRRGLL 210 >gi|325142479|gb|EGC64883.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis 961-5945] gi|325198384|gb|ADY93840.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis G2136] Length = 218 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|323499247|ref|ZP_08104224.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315635|gb|EGA68669.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 222 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 38/56 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 NLT+RE ++L G G ++ +IA++L +S +TV +L + K++A NR+QA+ A Sbjct: 157 NLTKREKEIMRLLGHGASNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212 >gi|239918332|ref|YP_002957890.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839539|gb|ACS31336.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 209 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + +A+ V A G L + S + L+ERE L+L Sbjct: 99 NAGAAGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLEL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ A++L +S TV +L KL NR +A+ +A R I Sbjct: 159 IARGATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208 >gi|121634943|ref|YP_975188.1| putative two-component system response regulator [Neisseria meningitidis FAM18] gi|254805030|ref|YP_003083251.1| putative two-component system response regulator [Neisseria meningitidis alpha14] gi|304387489|ref|ZP_07369678.1| nitrate/nitrite response regulator protein NarL [Neisseria meningitidis ATCC 13091] gi|120866649|emb|CAM10400.1| putative two-component system response regulator [Neisseria meningitidis FAM18] gi|254668572|emb|CBA06069.1| putative two-component system response regulator [Neisseria meningitidis alpha14] gi|254670104|emb|CBA05041.1| putative two-component system response regulator [Neisseria meningitidis alpha153] gi|304338376|gb|EFM04497.1| nitrate/nitrite response regulator protein NarL [Neisseria meningitidis ATCC 13091] gi|325132566|gb|EGC55259.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M6190] gi|325138339|gb|EGC60908.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis ES14902] Length = 218 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208 Query: 230 RF 231 R Sbjct: 209 RH 210 >gi|118464868|ref|YP_880140.1| LuxR family transcriptional regulator [Mycobacterium avium 104] gi|118166155|gb|ABK67052.1| DNA-binding response regulator, LuxR family protein [Mycobacterium avium 104] Length = 183 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + L + G+V+ S Sbjct: 23 DVALLDYRMPGMDGAQVAAAVRADGLATRVLLISAHDESAIVYQALQQGAAGFVLKDSTR 82 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ L+ RE L G + I Sbjct: 83 SEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPTGPVLSAREREVLHRIARGQSIPAI 142 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 143 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 182 >gi|134294023|ref|YP_001117759.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137180|gb|ABO58294.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 302 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 68/244 (27%), Gaps = 18/244 (7%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T ++ S E + + + + FA + + + + L Sbjct: 61 TLAQAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PATYRGDYV 118 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQL---------SVRLEGGLLPFA 116 D +PI+W E G ++ + Sbjct: 119 RHSHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDGGPCVTSAALDGFLQTMQDDGMCS 178 Query: 117 GIAFPVRLGFHKNGYVI------FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 GI + + + + + T E++ + G + R A Sbjct: 179 GIMYSMAVPGTRLHAFMSFTAPRRTREWIAPTTIEQALSIGLSVHKFASPQLIATSRERA 238 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E L +G + +EI +L S H V+ +L + NRIQ + Sbjct: 239 INGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTSK 298 Query: 231 FGYI 234 I Sbjct: 299 LELI 302 >gi|261251088|ref|ZP_05943662.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP 102891] gi|260937961|gb|EEX93949.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP 102891] Length = 209 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 C Q LE + + L++RE+ L+ +G ++EIA+ L +SV TV + Sbjct: 124 YLCPQASDRLLEQINEAPEEKDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTVETHR 183 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL A + + A++ G + Sbjct: 184 LRIKKKLGATSTAALVKLALQKGLV 208 >gi|255067698|ref|ZP_05319553.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca ATCC 29256] gi|255048039|gb|EET43503.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca ATCC 29256] Length = 218 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 40/100 (40%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + S + + + V + + A LT RE L G+++ Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRELEILGYLAAGHSN 170 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + IA L L+ TV ++ + KL+ +R+QA A++ Sbjct: 171 KVIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210 >gi|755086|dbj|BAA08666.1| MoaR-transcriptional positive regulator [Enterobacter aerogenes] Length = 227 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 10/219 (4%) Query: 10 KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K+S + R L I I + Y +N+ L + LHN ++ Sbjct: 6 KASRNDAIIARCLQTISQLIPLSSAVFYRVNNRL-----KPENYILHNISDNTHQQYLE- 59 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L S + + + + +R Sbjct: 60 SFQPLDPHLPAHFSHQSTTMAAMTP--RLCDRNRHYYHEFMLPNNVRDMTEIFIRRERRI 117 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + ++E + A V + ++ LT +E + + +G Sbjct: 118 VAGISLMR-DVPFSSEERLRAQAVLPLVELAIRDFLQEEDELPAILTAKEREIVGMVREG 176 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +++ IA +L +S+ TV +L + K + VNR + +++ Sbjct: 177 ASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215 >gi|328882240|emb|CCA55479.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 37/84 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + LT RET L+L G +++EIA+ L L+ TV ++G Sbjct: 138 LIADFAASRPAPRKDTTALRLNGLTPRETEVLELIARGLSNQEIADHLVLAEQTVKTHIG 197 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA+ A G + Sbjct: 198 RVLAKLDLRDRAQAVVFAYESGLV 221 >gi|308177612|ref|YP_003917018.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745075|emb|CBT76047.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 205 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 41/109 (37%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + + + A G + + LT+RE L Sbjct: 97 AGAAGYLLKDVSAQTIVDSIRQAALGNVVLAPEMTQRVVEGMRRPKVELTKREKDVLVQL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++IA+ L +S TV +L KL A R AI KA G + Sbjct: 157 ATGAANKQIAKALFVSEATVKTHLVHIFDKLQATTRTDAINKAQDLGLL 205 >gi|296448320|ref|ZP_06890211.1| transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296254166|gb|EFH01302.1| transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 254 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 17/224 (7%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD-DFLFHFN 81 +Q + F + + + H + + + + D L + Sbjct: 36 EMQRIVPHEWF--ICSVGRIGRNGIEPIHVVTHKFPDELFALISGSDPKVLDNPVLSRWW 93 Query: 82 SGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 PI + + +++ + L G V +G Y F Sbjct: 94 ETRAPIAINFEDCSGSWPQVMAERAIKFDARNLLGHG---QVDIGGAFVTYFSFHRIPQR 150 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAA----------RNLTERETSCLQLAGDGYT 190 L + + + F SAA LT R+ L+ G T Sbjct: 151 LDRKQTLLLARIVPNLYAAFARAHPSFESAATVKRLNDGRGAELTPRQIEILEWLRQGKT 210 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EI+ LG+SV V ++ T KL NR QA+A+A I Sbjct: 211 NWEISVILGMSVDNVKYHVKQITRKLQVANRTQAVAEAASRSVI 254 >gi|317131807|ref|YP_004091121.1| two component transcriptional regulator, LuxR family [Ethanoligenens harbinense YUAN-3] gi|315469786|gb|ADU26390.1| two component transcriptional regulator, LuxR family [Ethanoligenens harbinense YUAN-3] Length = 225 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + ++ L+ E ++ G G +++EIA KL LS TV YL Sbjct: 135 HMFSKMAQSSLTSPTAGKT--LELLSRTEKQVVREVGRGLSNKEIARKLNLSEGTVRNYL 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ +R Q A + G + Sbjct: 193 STILSKLELRDRTQLAIWATQSGIL 217 >gi|254449548|ref|ZP_05062985.1| two component transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] gi|198263954|gb|EDY88224.1| two component transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] Length = 204 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A LTERE L+ +G ++++IA L + TV ++ + K+ A NR QA Sbjct: 136 PANPLADKLTERELQVLKGLTEGKSNKQIARDLEIQEPTVKLHMKTLYRKVGAANRTQAA 195 Query: 226 AKAIRFGY 233 A G Sbjct: 196 MIAREAGL 203 >gi|327485685|gb|AEA80091.1| Nitrate/nitrite response regulator protein [Vibrio cholerae LMA3894-4] Length = 201 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 73 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 132 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 133 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 192 Query: 227 KAIRF 231 + Sbjct: 193 LYLER 197 >gi|327390805|gb|EGE89145.1| bacterial regulatory s, luxR family protein [Streptococcus pneumoniae GA04375] Length = 72 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + Sbjct: 4 HEELTARERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQ 63 Query: 231 FGYI 234 + Sbjct: 64 HHLV 67 >gi|313801796|gb|EFS43030.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|314962915|gb|EFT07015.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] Length = 218 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLGARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|298246666|ref|ZP_06970471.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549325|gb|EFH83191.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1067 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 T+E A+ + C Q + ++ + +L+ERE L+ +G ++ E Sbjct: 968 RTTENPAPASRYLDRLILLCKQEQQMGVPSGEQ-AELVESLSERECEVLRHISEGRSNRE 1026 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA +L +++ TV +++ + KL +R QA+ +A R + Sbjct: 1027 IARQLVIALSTVKSHIRAIYAKLGVKSRTQALIQARRLNLL 1067 >gi|229522242|ref|ZP_04411658.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM 11079-80] gi|229340227|gb|EEO05233.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM 11079-80] Length = 207 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + V ++ + ++ Q Sbjct: 70 LRSDECDAYVVILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSES 129 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L + S+ LTERE + GY + +IA++L +S TV ++ S KL Sbjct: 130 VERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKL 189 Query: 217 DAVNRIQAIAKAIRF 231 D +R A + Sbjct: 190 DVPSRTAATILYLER 204 >gi|291326938|ref|ZP_06126411.2| monoamine regulon transcriptional regulator [Providencia rettgeri DSM 1131] gi|291312593|gb|EFE53046.1| monoamine regulon transcriptional regulator [Providencia rettgeri DSM 1131] Length = 222 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 14/206 (6%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79 L+ I + I Y +N Q LH + D H Sbjct: 19 LNTIAHIIPVSALVYYLVN-----DHCQPDNYVLHGISAKMHEEYLT-YFHQLDPLHPDH 72 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 F S L ++ + E ++ +R + Sbjct: 73 FRSDDLRLV--RMDSEIRQQNQA-FFHDFMQPNNMADMAEIFIRRKNKIIAGISVLR-DS 128 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + I+ + L F + + T +E + L +G +++ IA LG Sbjct: 129 PFSQQEIMRLNAILPVA---ELMTFDVLPDSLVSYTPKEQEIIHLVREGASNKRIALLLG 185 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAI 225 +S+ TV +L + K + NR + + Sbjct: 186 VSLSTVKTHLRNIFTKANVTNRTELV 211 >gi|86146681|ref|ZP_01065002.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] gi|218676406|ref|YP_002395225.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32] gi|85835528|gb|EAQ53665.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] gi|218324674|emb|CAV26268.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32] Length = 227 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 T + ++ + ++++ K LT+RE + Sbjct: 112 QDAPVEHLTRCLKTVCDDDLWLPRKLMSHILSNARSQTFKSQVILSTLTKREAQIFKRVI 171 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 G T+ EI+ +L +S TV ++ + K++ NR +AI KA Sbjct: 172 RGDTNLEISSELFISESTVKTHVYNIYKKINVTNRKEAIRKA 213 >gi|330823094|ref|YP_004386397.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|329308466|gb|AEB82881.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 224 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 5/124 (4%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + + +++ E++ + A E Sbjct: 96 AALRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQS--QGAPEPDPGP 153 Query: 168 SS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L+ RE L+ G +++EIA +L ++ TV ++ KL +R+QA Sbjct: 154 MPQEDPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQA 213 Query: 225 IAKA 228 A Sbjct: 214 AVYA 217 >gi|328950846|ref|YP_004368181.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451170|gb|AEB12071.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 192 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Query: 154 YQVITDFLELFKKR-----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ L+L + R LT RE L L G T++E+A L LS TV + Sbjct: 107 AELARRVLDLAEGRAGRFVPPPVPELTAREREVLTLLARGMTAKEMARYLNLSPDTVRDH 166 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L KLDA R++A+ +A + G I Sbjct: 167 LKRLYGKLDARGRVEALVRARQLGLI 192 >gi|317049077|ref|YP_004116725.1| LuxR family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950694|gb|ADU70169.1| two component transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 210 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 11/134 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----------ACYQV 156 L + + V + +I L + E +V Sbjct: 73 LRHEEISARILVLTVSDARNDIYAMIDAGADGYLLKDSEPELLLQQILSGAQGETVFSEV 132 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++L ++ R LTERE LQ G +++EIA L +S TV ++ + KL Sbjct: 133 VEEYLANRPHSANPFRELTERELDVLQEVARGLSNKEIATTLHISEETVKVHIRNLLRKL 192 Query: 217 DAVNRIQAIAKAIR 230 D +R+ A + Sbjct: 193 DVRSRVAATVLWLE 206 >gi|312136161|ref|YP_004003499.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor owensensis OL] gi|311776212|gb|ADQ05699.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor owensensis OL] Length = 213 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +NL+ERE +L GY++++I++ L +S TV Y+ S KL+ NR Q Sbjct: 153 KNLSERELEIARLIAQGYSNKDISKILFISEGTVRNYISSILEKLELKNRTQIAVY 208 >gi|226308488|ref|YP_002768448.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226187605|dbj|BAH35709.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 292 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 49/145 (33%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 + + ++ + L + +A + A Sbjct: 147 REFEIRDEVDRRVAMLDTAAVEHGSNRDAQISEGLTESVLALGEIAANLEDMALSAQVLA 206 Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 A + + + L+ RE + G + EIAE+L LSV T+ Y+ Sbjct: 207 VEAKLRALASPNPSANTPVANTVVLSPREREVMGYVALGLRNAEIAERLSLSVETIKTYM 266 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KLD +R +A+ +A R G I Sbjct: 267 RNLMGKLDVRSRHEAVVEARRQGLI 291 >gi|29826626|ref|NP_821260.1| erythropoiesis-stimulating protein [Streptomyces avermitilis MA-4680] gi|29603722|dbj|BAC67795.1| putative erythropoiesis-stimulating protein [Streptomyces avermitilis MA-4680] Length = 331 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 80/227 (35%), Gaps = 15/227 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L ++ RL + + + A P+ + + D Sbjct: 116 VEQLVGLDQIRDRLTGLTREVSEE-----LLTFAPGGPQTADNMAASRPLNGDLLGRGVR 170 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + Y D + + + ++ L+ V Sbjct: 171 MRTLYLDSV----RTDRATVEHARWLTSLGGQVRTVPALPTRLILMDRKTALISVSSDDT 226 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G V+ T + + A + E A Q + D + + + LT ++ + ++L + Sbjct: 227 AAGAVVLTGQGTLTALHALFETTWAGAQPLGDTVPVDR------HGLTGQQATVVRLLAE 280 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T E IA++LG+S T +L+A +R +A +A++ G++ Sbjct: 281 GHTDETIAKRLGVSPRTARRIASELMERLEARSRFEAGVRAVQRGWL 327 >gi|325686801|gb|EGD28826.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 199 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|319950310|ref|ZP_08024229.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319436002|gb|EFV91203.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 250 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 41/107 (38%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + VI R+S LT RET L+L Sbjct: 140 RAVGHGHALLAPEVTRRVIERLAAPPPADDAPDAGRPGPRASELAGLTARETEVLRLVAR 199 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA++L + TV ++ S KL +R+QA+ A G + Sbjct: 200 GLSNAEIADELVVGEATVKTHVSSCLAKLHLRDRVQAVVLAYEVGLV 246 >gi|311896597|dbj|BAJ29005.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L+L G ++ EIA +L +S HTV ++ + KL +R+ A+ A Sbjct: 154 ESLTGREAETLKLVARGMSNAEIAAELVVSEHTVKTHVSNLLQKLGLRDRVHAVVFAYEA 213 Query: 232 G 232 G Sbjct: 214 G 214 >gi|293401509|ref|ZP_06645652.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305147|gb|EFE46393.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 83 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L Y++ EIA+++G+S TV ++ + +KL R QA+ + ++ G Sbjct: 21 LTPREKEVFELLIANYSTREIAKRMGISDKTVRNHISNVMLKLGVKGRAQAVVELLKLG 79 >gi|26248576|ref|NP_754616.1| transcriptional regulator NarP [Escherichia coli CFT073] gi|91211483|ref|YP_541469.1| transcriptional regulator NarP [Escherichia coli UTI89] gi|117624388|ref|YP_853301.1| transcriptional regulator NarP [Escherichia coli APEC O1] gi|227887250|ref|ZP_04005055.1| transcriptional regulator NarP [Escherichia coli 83972] gi|237704666|ref|ZP_04535147.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA] gi|300981378|ref|ZP_07175493.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 200-1] gi|300982960|ref|ZP_07176392.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 45-1] gi|301048933|ref|ZP_07195926.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 185-1] gi|331647847|ref|ZP_08348939.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M605] gi|26108981|gb|AAN81184.1|AE016763_143 Nitrate/nitrite response regulator protein narP [Escherichia coli CFT073] gi|91073057|gb|ABE07938.1| nitrate/nitrite response regulator protein NarP [Escherichia coli UTI89] gi|115513512|gb|ABJ01587.1| nitrate/nitrite response regulator protein NarP [Escherichia coli APEC O1] gi|222033954|emb|CAP76695.1| Nitrate/nitrite response regulator protein narP [Escherichia coli LF82] gi|226901032|gb|EEH87291.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA] gi|227835600|gb|EEJ46066.1| transcriptional regulator NarP [Escherichia coli 83972] gi|300299309|gb|EFJ55694.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 185-1] gi|300307590|gb|EFJ62110.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 200-1] gi|300408653|gb|EFJ92191.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 45-1] gi|315285806|gb|EFU45246.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 110-3] gi|315298006|gb|EFU57275.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 16-3] gi|324013986|gb|EGB83205.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 60-1] gi|331043571|gb|EGI15709.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M605] Length = 225 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 81 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAATIL 217 >gi|323491663|ref|ZP_08096841.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323314025|gb|EGA67111.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 225 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + + A +LT RE L+ G ++ +IAE + +S TV ++L KL NR Sbjct: 152 VDSQTTPATVDLTIRELQILRCLISGSSNTQIAEDMFISEFTVKSHLQKIFKKLCVKNRA 211 Query: 223 QAIAKAIRF 231 QA + A + Sbjct: 212 QAASWARQH 220 >gi|260428797|ref|ZP_05782774.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260419420|gb|EEX12673.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 206 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +++ A LT+RE L+ +G +++EIA L L+ T+ ++ + KL+ NR Q Sbjct: 136 EEEKHPLAERLTKRELEVLRGLSEGKSNKEIARDLDLTEPTIKLHMKTLYRKLEVNNRTQ 195 Query: 224 AIAKAIRFGY 233 A A G Sbjct: 196 AAIVARDEGL 205 >gi|312140502|ref|YP_004007838.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311889841|emb|CBH49158.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 220 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++ EIAE+L ++ TV ++G KL +R QA+ A Sbjct: 155 ETLTPREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYES 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|254488074|ref|ZP_05101279.1| two component response regulator [Roseobacter sp. GAI101] gi|214044943|gb|EEB85581.1| two component response regulator [Roseobacter sp. GAI101] Length = 218 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 4/89 (4%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + A C +R +LTERE + L G +++E+A L +SV TV Sbjct: 127 MQGAQYLCTGAQGSLQPKDDER----ESLTEREQTILLQLAQGQSNKEVALTLDISVRTV 182 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL + A+ G + Sbjct: 183 ETHRKNIKRKLGISSTAGLTRYAMEHGVL 211 >gi|62737761|gb|AAX98178.1| response regulator [Streptomyces aizunensis] Length = 201 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V A G + +LF+ R L++RE LQL Sbjct: 92 AGAAGYLLKGSSRDELVQAVKAAARGETVLTPSLAPKLFRARVVEPPALSDREREVLQLV 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +I +L +S TV +L + KL +R A+ A++ G + Sbjct: 152 SLGLTNADIGRQLFISEATVKTHLLRSFKKLSVSDRTAAVITALKLGLL 200 >gi|298247238|ref|ZP_06971043.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549897|gb|EFH83763.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 939 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 40/85 (47%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 A + + L+ RE L+L G ++++IAE L ++ TV ++ Sbjct: 849 QPAAPPAHLESEPSSRLPQPLLDPLSAREQEVLRLLARGASNQDIAEALVVATSTVKHHI 908 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+A NR QA+A+A G + Sbjct: 909 SNILSKLEATNRTQAVARARALGLL 933 >gi|253996742|ref|YP_003048806.1| two component LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983421|gb|ACT48279.1| two component transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 212 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ L + L+ RE G T+ EIAE L LS TV +L + Sbjct: 131 VAQQMAIQQLSGDQN---PVDVLSPREFEVFMALAKGKTTNEIAETLFLSPRTVGTHLYN 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+A N + A+R G + Sbjct: 188 IKQKLNANNSAEIALIAMRSGLL 210 >gi|225857575|ref|YP_002739086.1| response regulator [Streptococcus pneumoniae P1031] gi|225725289|gb|ACO21141.1| response regulator [Streptococcus pneumoniae P1031] Length = 199 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|213580328|ref|ZP_03362154.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 190 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 4/180 (2%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + LHN + D L + +I + + Sbjct: 3 KPEAYVLHNISNSTHQQYLEH-FQPLDPLLP--SRFGQQVITVATMTPGICARHRHYYHE 59 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 I +R G + + ++E + A + + ++ Sbjct: 60 FMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIPFSSEERLRAQAVQPLLGLAIHDSLQED 118 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT +E + + +G +++ IA +L +S+ TV +L + K + +NR + +++ Sbjct: 119 NDLASILTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 178 >gi|116071519|ref|ZP_01468787.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116065142|gb|EAU70900.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 92 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L+ RE +QL +G T++EIA++L +S TV+ ++ + K + NR+ + + Sbjct: 9 PLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWS 68 Query: 229 IRFGYIC 235 + G IC Sbjct: 69 MDNGKIC 75 >gi|328885811|emb|CCA59050.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 260 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + R + +TERE L+L +G++S+EI + L +S TV + + KL +R Sbjct: 186 RAEQGRPLPDKAVTEREEEILKLVAEGHSSKEIGDLLVISPKTVERHRANLLQKLGMRDR 245 Query: 222 IQAIAKAIRFGYI 234 ++ AIR G I Sbjct: 246 LELTRYAIRVGLI 258 >gi|269797048|ref|YP_003316503.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099233|gb|ACZ23669.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 221 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 V LTERE L G T+++IA +L +S HT ++ Sbjct: 138 YVHQQAPRADAWEGDGLGRLTEREREVFLLVAAGRTNQDIAAELVISTHTAKTHVNRIMT 197 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 K+D +R + A G + Sbjct: 198 KVDVRDRAHLVILAYESGLV 217 >gi|152987869|ref|YP_001346413.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150963027|gb|ABR85052.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7] Length = 222 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 56/215 (26%), Gaps = 13/215 (6%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + + A Y I+ + +L D L Sbjct: 11 QRCMQAFTQVVPASLCVFYRIDREY-----RAHDFQLLRMPASMHRDYLRH-YRDYDPLL 64 Query: 78 -FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT- 135 H + P++ L + R + Sbjct: 65 PRHCLASASPVVPLRQGMARQDARHTALYQGFLRRHGVCDVVEVLARAQDRPVAALSLLR 124 Query: 136 ----SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 F + + HG +++ LT RE L DG ++ Sbjct: 125 GTELGAFSGHDLQQLQALHGLMELAAQAWVD-EPAHGDRLHGLTPRERQIALLLRDGVSN 183 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + +A +LGL + TV +L + K A NR + + Sbjct: 184 KCLARQLGLGLPTVKTHLLNLFRKTGAHNRTELVR 218 >gi|269839567|ref|YP_003324259.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791297|gb|ACZ43437.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYL 209 G +++ + + + LTERE L+L G +++E+AE+L LS +TV +L Sbjct: 126 GLARKLLREMSKPAGRAEREPEVLTEREQEILELLVQGVTSNKELAERLILSENTVKYHL 185 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL NR Q +A A++ G + Sbjct: 186 RNILDKLHLQNRTQVVAYALQHGLV 210 >gi|300857740|ref|YP_003782723.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685194|gb|ADK28116.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302330034|gb|ADL20228.1| Response regulator [Corynebacterium pseudotuberculosis 1002] Length = 221 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L G ++ EIA +L +S+ TV ++G K + +R+ A+ A Sbjct: 164 EPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHAVLFA 220 >gi|146279180|ref|YP_001169338.1| aldose 1-epimerase [Rhodobacter sphaeroides ATCC 17025] gi|145557421|gb|ABP72033.1| Aldose 1-epimerase [Rhodobacter sphaeroides ATCC 17025] Length = 207 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 28/232 (12%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 +T + S+L + P + + + P + + + + Sbjct: 1 MTLRSFSALTDQEPLFRDLAPAG-----SYVALRVGFLAPEEESNL-----FPSEWIRFY 50 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG--IAFPVR 123 D + W S+ + G I P R Sbjct: 51 TTHAYGMKDPLTRWAATANGATRWSSVTLPDEAG-----VMAAYRLHGLRYGCVIGLPAR 105 Query: 124 LGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + + + IF + N I L + + LT+ + L Sbjct: 106 ISRSRKRTFGIFARSDREMTNAEIGALRA----------SLAELHAPERDALTQSQAEVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +G +EIA +LG++ V A +A +L A +QA A + G + Sbjct: 156 RMLSEGVRYKEIAWRLGITEGAVKARFKAACQRLGARTAVQAANIAQKRGLL 207 >gi|324989912|gb|EGC21854.1| DNA-binding response regulator [Streptococcus sanguinis SK353] Length = 199 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|260577934|ref|ZP_05845864.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603954|gb|EEW17201.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] Length = 227 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 +G V + + + ++ LT Sbjct: 99 SGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRREPVELDLPDPLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL G +++EIA+KL +S+ TV ++G K + +R+ A+ A + + Sbjct: 159 PRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHAVLFAFKHHLV 217 >gi|325964357|ref|YP_004242263.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470444|gb|ADX74129.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 241 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 157 ITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + A LT RE L G + EIA KL LS TV ++ + Sbjct: 159 HFSSRAADGQSVPTADISVLTAREREVLGAMAVGLKNAEIANKLFLSETTVKTHVHRILL 218 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R QA+A A R G I Sbjct: 219 KLGLSDRSQAVAVAYRSGLI 238 >gi|300787274|ref|YP_003767565.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796788|gb|ADJ47163.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 213 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + L + LT RET L+L G T+ +I +L +S TV +L KL Sbjct: 134 LVNHLRSPAPAPAEPELLTPRETQVLRLVARGLTNADIGRELHISETTVKTHLVRMFAKL 193 Query: 217 DAVNRIQAIAKAIRFG 232 + +R A+ A++ G Sbjct: 194 EVGDRTAAVTVAMQRG 209 >gi|21222053|ref|NP_627832.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786858|ref|ZP_05525289.1| two-component system regulator [Streptomyces lividans TK24] gi|289770753|ref|ZP_06530131.1| two-component system regulator [Streptomyces lividans TK24] gi|4753862|emb|CAB42025.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700952|gb|EFD68381.1| two-component system regulator [Streptomyces lividans TK24] Length = 221 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +++ L +A +LT+RET L L G ++ EIAE+L ++ T+ ++ VKL Sbjct: 141 LSETPRLMPSAQAAYGDLTDRETEVLVLIAQGLSNGEIAERLVVAESTIKTHVSRILVKL 200 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA A + Sbjct: 201 GLRDRTQAAVFAYEARLV 218 >gi|324006555|gb|EGB75774.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 57-2] Length = 223 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 14/134 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 81 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQA 224 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAA 214 >gi|256397990|ref|YP_003119554.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364216|gb|ACU77713.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 221 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 39/121 (32%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + + V + + A Sbjct: 96 LRAGASGFLLKDAPAAELVHAVRVVAAGDALLAPSVTRRLIADFAARRPADQSGPVAVAA 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G +++EIA +L L+ TV ++ K +R QA+ A G Sbjct: 156 LTPRELDVLRLIARGLSNQEIAGELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGL 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|297564548|ref|YP_003683520.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296848997|gb|ADH62012.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 204 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 33/76 (43%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + + +LT +E L G +++ IA+ LG+S T+ ++ S KL+ Sbjct: 129 AAVRLLARPARNPLASLTPKEREVLTHLARGMSNKAIAQALGVSEKTIKTHVSSLLAKLN 188 Query: 218 AVNRIQAIAKAIRFGY 233 R QA A G Sbjct: 189 LKGRTQAALLAREQGL 204 >gi|329768816|ref|ZP_08260247.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325] gi|328839589|gb|EGF89164.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325] Length = 199 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L+ +E L +G +++EI+ +L LS T+ Y+ + KL+ NR Sbjct: 127 ELMENIFTNHNPLSNQEKILLAKVKEGLSNKEISSELYLSEGTIRNYISNILTKLNCKNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ KA G+I Sbjct: 187 TEAVKKATEEGWI 199 >gi|293375961|ref|ZP_06622221.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325841957|ref|ZP_08167534.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|292645398|gb|EFF63448.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325489790|gb|EGC92145.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 214 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+E+E ++ G T++EIA KL LS T+ ++ + KL+ +R Q A + G Sbjct: 153 RLSEKELMIIREIATGLTNKEIAAKLFLSEGTIKNHITNILFKLELRDRTQIAIFAFKNG 212 Query: 233 Y 233 Sbjct: 213 L 213 >gi|256395226|ref|YP_003116790.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361452|gb|ACU74949.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 235 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L G ++ EIA + + TV ++ KLD +R+QA+ A Sbjct: 167 DTLTDREREVLAHLARGLSNSEIAAHIYIGEGTVKTHVSRILAKLDLRDRVQAVVYAYES 226 Query: 232 GYI 234 G + Sbjct: 227 GLV 229 >gi|297563008|ref|YP_003681982.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847456|gb|ADH69476.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 241 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++I +F EL K+ S+ LT RET L+L + EI E+L ++ +TV Sbjct: 150 AMATKLIGEFAELAKQESAPPSRTTIPELTRRETEVLKLLARSLNNREIGERLFITENTV 209 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL +R +A A+R Y+ Sbjct: 210 KNHVRKILEKLQVHSRTEAAIYAVRAEYV 238 >gi|284043982|ref|YP_003394322.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948203|gb|ADB50947.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 43/96 (44%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + A + ++ A + + + A L+ RE L+L G + I Sbjct: 116 AGVTAVAAGDAVLSPRVAATMLARMRASGRQTAARARAQLSPREQEVLRLVAGGMDNAAI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A++L +S HTV ++ S KL NRIQA +A+R Sbjct: 176 AQELFISPHTVKNHISSILTKLHVANRIQAAVRAVR 211 >gi|125718762|ref|YP_001035895.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323350426|ref|ZP_08086089.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498679|gb|ABN45345.1| Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative [Streptococcus sanguinis SK36] gi|322123363|gb|EFX95041.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|327462857|gb|EGF09179.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] Length = 199 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|59713015|ref|YP_205791.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio fischeri ES114] gi|59481116|gb|AAW86903.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio fischeri ES114] Length = 214 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + + ++I + E S + +LT RE+ L+L G ++ +IA L +S +T Sbjct: 121 EMWLSRKIISELIFTYREKQNAILSTSISLTTRESEILRLLASGASNLDIANSLFVSENT 180 Query: 205 VNAYLGSATVKLDAVNRIQAIAKA 228 V +L + KL+ NR+QA+ A Sbjct: 181 VKTHLYNVFKKLNVKNRLQAMMWA 204 >gi|324992362|gb|EGC24283.1| DNA-binding response regulator [Streptococcus sanguinis SK405] Length = 199 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEQGWL 199 >gi|229488619|ref|ZP_04382485.1| response regulator receiver protein [Rhodococcus erythropolis SK121] gi|229324123|gb|EEN89878.1| response regulator receiver protein [Rhodococcus erythropolis SK121] Length = 288 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 49/145 (33%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 + + ++ + L + +A + A Sbjct: 143 REFEIRDEVDRRVAMLDTAAVEHGSNRDAQISEGLTESVLALGEIAANLEDMALSAQVLA 202 Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 A + + + L+ RE + G + EIAE+L LSV T+ Y+ Sbjct: 203 VEAKLRALASPKPSANTPVANTVVLSPREREVMGYVALGLRNAEIAERLSLSVETIKTYM 262 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KLD +R +A+ +A R G I Sbjct: 263 RNLMGKLDVRSRHEAVVEARRQGLI 287 >gi|269125551|ref|YP_003298921.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310509|gb|ACY96883.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 215 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 42/80 (52%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ + A LTERE ++L G T+EEIA +L +S+ TV +LG+ Sbjct: 135 RLLAHLTRPQRPARRPAEPLTERELQVVRLVARGRTNEEIAGELFVSLSTVKTHLGNVQR 194 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A NR++ A A G + Sbjct: 195 KLAARNRVEIAAWAWESGIV 214 >gi|134098945|ref|YP_001104606.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133911568|emb|CAM01681.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 45/113 (39%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR G + L+ A + A + S+ LTERE Sbjct: 115 VRRGARGYVVKDVDTTELVRAIRAVARGESAFDSRSAAAMVHSMNNRSSEPELTERELGV 174 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ +I +L +S T ++ + KLD R +A+ +A + G I Sbjct: 175 LRLLAAGSSNRQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 227 >gi|318061908|ref|ZP_07980629.1| two component system response regulator [Streptomyces sp. SA3_actG] gi|318078461|ref|ZP_07985793.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 224 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + ++ A + ++ K + + LTERET L L Sbjct: 113 PADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPAPGKPALRLKALTERETEVLTLVAR 172 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE L L+ TV ++ KL +R QA+ A G + Sbjct: 173 GRSNAEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 219 >gi|298242293|ref|ZP_06966100.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555347|gb|EFH89211.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 197 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 GY++ + L + A G L ++ + L+ERE L L Sbjct: 82 AGATGYILKDAPREQLFAAIRTVAQGKSVFAPEVVTRLLRHMQTPPSSVLSERELEVLAL 141 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G +++E A L +S T+ ++L KL +R A+ A+ G + Sbjct: 142 VGRGASNKEAARSLFISEATIKSHLLRIFGKLGVEDRTAAVTVALEKGML 191 >gi|284050625|ref|ZP_06380835.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291567571|dbj|BAI89843.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 208 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L +G ++ EIAE L LS +T+ ++ KL +R+ A+R G Sbjct: 148 LSPRELEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGL 207 Query: 234 I 234 + Sbjct: 208 V 208 >gi|262370436|ref|ZP_06063762.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] gi|262314778|gb|EEY95819.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] Length = 228 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L L G ++ EIAE+L +S +TV +++ KL R +A++ A Sbjct: 166 DQLTNRETEILNLVAQGLSNREIAEQLFVSRYTVESHIKHIYRKLSVSKRTKAVSTARSL 225 Query: 232 GYI 234 G + Sbjct: 226 GIL 228 >gi|256420538|ref|YP_003121191.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035446|gb|ACU58990.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 198 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 39/84 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A +V+ F L+ RE L +G T ++IAE +SV TV +++ Sbjct: 113 LAVQKVLAFFNRKNAGSQDHRYGLSPRELEVLDCLVNGDTYKKIAEHCHISVGTVRSHIM 172 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KLD +R AI KA++ + Sbjct: 173 NIYRKLDVNSRSGAIVKAMQERLV 196 >gi|189466603|ref|ZP_03015388.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM 17393] gi|189434867|gb|EDV03852.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM 17393] Length = 275 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + + +++ + LT E S L+ G T++EIA + L Sbjct: 175 ASRKERFICNHVSNLLLSGSSVAPARPVPKDDLLTPAERSILKEIALGKTTKEIAAERNL 234 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTVN++ + KL N +A A++ G + Sbjct: 235 SFHTVNSHRKNIFRKLGVNNAHEATKYAMKAGIV 268 >gi|156743203|ref|YP_001433332.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234531|gb|ABU59314.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 222 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V +F L + A LTERE L L +G+ + IA++L LS TV L Sbjct: 136 RVFDEFRRLSIDQD--AEQLTERERDILTLLAEGHDNRTIAQRLFLSEKTVGNRLSEIFQ 193 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL NR QA A++ G I Sbjct: 194 KLGVSNRTQAALVAVQRGLI 213 >gi|32141276|ref|NP_733677.1| response regulator [Streptomyces coelicolor A3(2)] gi|256784694|ref|ZP_05523125.1| response regulator [Streptomyces lividans TK24] gi|289768580|ref|ZP_06527958.1| response regulator [Streptomyces lividans TK24] gi|1542943|emb|CAA69209.1| redZ [Streptomyces coelicolor A3(2)] gi|24429546|emb|CAD55237.1| response regulator [Streptomyces coelicolor A3(2)] gi|289698779|gb|EFD66208.1| response regulator [Streptomyces lividans TK24] Length = 217 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + +T + ++ LT RET L L G T+ E+A L +S TV +++ Sbjct: 126 AQEALTRYWRSKAPKNLRPE-LTPRETEVLLLLTQGKTNTEMAATLSVSPTTVRSHVHRI 184 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL A R QA+A A G + Sbjct: 185 LRKLGAATRAQAVAIAYESGLL 206 >gi|21225370|ref|NP_631149.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783610|ref|ZP_05522041.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767492|ref|ZP_06526870.1| two-component system response regulator [Streptomyces lividans TK24] gi|7688304|emb|CAB89760.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697691|gb|EFD65120.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 4/107 (3%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGD 187 V+ + A + ++ + AA LTERE + LA Sbjct: 113 VLLAGIRTVAAGDSLLSPTATRALITRFLASPTDDVPLAAPERLALLTEREREVMALAAL 172 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA+ L +S TV +++ A KL+A +R Q + A + G + Sbjct: 173 GKSNQEIADHLVVSPLTVRSHVSRAMTKLNARDRAQLVVIAYQSGLV 219 >gi|297194566|ref|ZP_06911964.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152332|gb|EDY66387.2| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 58/197 (29%), Gaps = 4/197 (2%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 I+ + P ++ + D + + E G + ++ + Sbjct: 28 IDVVGEAPDGRKGVEVSRTTHPDVVLMDVRMPEMDGLAAARELLNPPTAVVHRPKVLMLT 87 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 +G V + L + Sbjct: 88 TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRIVAAGEALLAPSVTR--RLIADFA 143 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + S LT RET L+L G +++EIA L L+ TV ++G KLD Sbjct: 144 AQRPAPRRDPSLRLNGLTPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLD 203 Query: 218 AVNRIQAIAKAIRFGYI 234 +R QA+ A G + Sbjct: 204 LRDRAQAVIFAYESGLV 220 >gi|239929933|ref|ZP_04686886.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438267|ref|ZP_06577657.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341162|gb|EFE68118.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +++ L +A +LTERET L L G ++ EIAE+L ++ T+ ++ VKL Sbjct: 141 LSETPRLMPSAQAAYGDLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKL 200 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA A + Sbjct: 201 GLRDRTQAAVFAYEARLV 218 >gi|229542987|ref|ZP_04432047.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229327407|gb|EEN93082.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 511 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 153 CYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ FL+ ++ L+ RE LQL DG ++ E AE L LS +TV Y+ Sbjct: 427 AGELLAKFLKANQWDEKQPELVQLSAREIHILQLLADGASTTEAAEMLHLSEYTVRDYVS 486 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S +L A NR +A KA+R G I Sbjct: 487 SLMKRLHARNRTEAAVKAMRLGLI 510 >gi|226310381|ref|YP_002770275.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093329|dbj|BAH41771.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 199 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 NGY++ S LA+ + G EL + LTERE L L Sbjct: 94 AGANGYLLKDSPSEELASSIRSIMAGRRIYA----PELVDEAYGQENPLTEREKEVLLLV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L ++ TV Y+ KL NRI+AI + G+ Sbjct: 150 ADGKNTKEIASQLYITTGTVRNYISVILDKLGVSNRIEAIMHSKEKGW 197 >gi|148656116|ref|YP_001276321.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148568226|gb|ABQ90371.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 220 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V +F L + A LTERE L L GY + IA++L LS TV L Sbjct: 135 KVFDEFRRLSVDQD--AEQLTERERDILTLLAAGYDNRTIAQRLFLSEKTVGNRLSEIFQ 192 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL NR QA A++ G I Sbjct: 193 KLGVSNRTQAALVAVQRGLI 212 >gi|37519842|ref|NP_923219.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210833|dbj|BAC88214.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 224 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 6/144 (4%) Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 + S S R+ + G + L+ A +++ + Q Sbjct: 76 RLFRSKDPSARILMVADDEEQVMLAFHAGANGCLLKSVQGHELLNAVGLVLSGYLVFGQA 135 Query: 157 ITDFLELFK------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 IT + + + + + LT RE L L T+ EIA++L +S TV+++ Sbjct: 136 ITRLVAEEQGTGKFGRAAGSVPRLTAREHEVLMLIAQELTNNEIAKRLYISPRTVDSHRA 195 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL N + A G + Sbjct: 196 RLMGKLGTRNTAGLVRIAAECGLL 219 >gi|317050571|ref|YP_004111687.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316945655|gb|ADU65131.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 224 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 20/163 (12%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + ++ +L+ + + + G V+ A+ +I Sbjct: 53 LDINLPDKNGMELAEDILRKHGLVKILFLTMHDEPEYVGRVLHIGAAGYILKNAADTELI 112 Query: 148 EAHGACYQ--------VITDFLELFKKR--------SSAARNLTERETSCLQLAGDGYTS 191 A A + ++ + ++ + +L++RET LQL GYT Sbjct: 113 NAIRAVKRGEFVLQRGLMENIARQKSRKLSGHTIEAAPPKASLSKRETEVLQLIALGYTQ 172 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +E+A++LG+S+ T+ + + L R + + A+ G I Sbjct: 173 QEVADQLGISIKTIETHKANIMESLGTKKRSELVRYALAHGLI 215 >gi|224583267|ref|YP_002637065.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467794|gb|ACN45624.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 238 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 94 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 153 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 154 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 213 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +RI A Sbjct: 214 NLLRKLNVRSRIAATIL 230 >gi|217978486|ref|YP_002362633.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217503862|gb|ACK51271.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 209 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 2/107 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G++ +S LA + G Y +D K+ + A LT R+ + L L Sbjct: 97 NCGAAGFIPKSSSMEDLAAALKQVLDGGVYIPGSDEAR-EKRGPAEADALTPRQLAVLGL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G +++EIA L +S TV ++ + KL R QAI A + Sbjct: 156 LSAGKSNKEIARALSISDLTVKVHITTIFRKLGVATRTQAIV-AFQR 201 >gi|308187897|ref|YP_003932028.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] gi|308058407|gb|ADO10579.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] Length = 215 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 16/143 (11%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ----------- 155 +L L + F V + L ++ EA Sbjct: 72 QLREIALSGRVVVFSVSDNEEDVVSALKRGADGYLLKDMEPEALLKALHQAAAGQIVLSE 131 Query: 156 -----VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ E ++ LT RE LQL DG T++ IA KL +S TV ++ Sbjct: 132 ALTPILVARLRESQPAQTRDISQLTRRERDILQLISDGMTNKAIARKLDISESTVKVHVK 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 K++ +R++A A++ G Sbjct: 192 YLLKKINLKSRLEAAVWALQNGL 214 >gi|298370036|ref|ZP_06981352.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] gi|298281496|gb|EFI22985.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] Length = 219 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 L + + + V + + + + LT RE L G++++ IA+KL Sbjct: 118 ALNGDNVFSPEMTAHLVKSLISPIQPQSDAHIGTLTPRERETLHHLAIGHSNKVIAKKLN 177 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ TV AY+ S KL +R+QA AI+ Sbjct: 178 LAESTVKAYVQSILRKLGLSSRVQAAVYAIQH 209 >gi|300780243|ref|ZP_07090099.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300534353|gb|EFK55412.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 212 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + +LT RE LQL G ++ EI ++L LS TV ++L KL +R Sbjct: 140 RLQTRDRTPRSSLTPRELEVLQLVAGGSSNREIGQRLMLSEATVKSHLVHIYDKLGVRSR 199 Query: 222 IQAIAKAIRFGYI 234 A+A A G + Sbjct: 200 TSAVASAREQGVL 212 >gi|124516028|gb|EAY57537.1| putative two component transcriptional regulator, LuxR family [Leptospirillum rubarum] Length = 211 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + L + L+ RET L+L G ++ EI + G+S+ TV A++ Sbjct: 130 AIAHLALNRIRVLDY--PANDNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQ 187 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL A R A KAI+ G I Sbjct: 188 SILEKLSASTRADAAVKAIKKGLI 211 >gi|172062446|ref|YP_001810097.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994963|gb|ACB65881.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 514 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200 + +A +I + ++ + A LT RE L G +EIA +LGL Sbjct: 398 AMQDASWFSRTLIEKLANVRRENAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGL 457 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +TV ++ + KLD +R +AI A G + Sbjct: 458 APNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|114765164|ref|ZP_01444308.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542439|gb|EAU45466.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 204 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLA 185 G+V T L N V A G Y I + + A++LT+RE L+ Sbjct: 96 GAAGFVPKTLPAKSLVNAVRFMAMGEQYAPIAFMTAAEEVEEHPLAKSLTKREMEVLKGL 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G +++EIA L ++ T+ ++ + KLD NR QA A G Sbjct: 156 TEGKSNKEIARDLEITEPTIKLHVKTLYRKLDVNNRTQAAIVARDAGI 203 >gi|115359991|ref|YP_777129.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285279|gb|ABI90795.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 514 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200 + +A +I + ++ + A LT RE L G +EIA +LGL Sbjct: 398 AMQDASWFSRTLIEKLANVRRENAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGL 457 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +TV ++ + KLD +R +AI A G + Sbjct: 458 APNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|23336584|ref|ZP_00121794.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum DJO10A] gi|189440631|ref|YP_001955712.1| putative response regulator [Bifidobacterium longum DJO10A] gi|312133936|ref|YP_004001275.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|322689868|ref|YP_004209602.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691808|ref|YP_004221378.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|189429066|gb|ACD99214.1| Putative response regulator [Bifidobacterium longum DJO10A] gi|291516417|emb|CBK70033.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311773230|gb|ADQ02718.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|320456664|dbj|BAJ67286.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461204|dbj|BAJ71824.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 231 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228 Query: 232 GYI 234 + Sbjct: 229 RIV 231 >gi|325675879|ref|ZP_08155563.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553850|gb|EGD23528.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 222 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++ EIAE+L ++ TV ++G KL +R QA+ A Sbjct: 157 ETLTPREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYES 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|239981000|ref|ZP_04703524.1| response regulatory protein [Streptomyces albus J1074] gi|291452866|ref|ZP_06592256.1| response regulatory protein [Streptomyces albus J1074] gi|291355815|gb|EFE82717.1| response regulatory protein [Streptomyces albus J1074] Length = 219 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 36/109 (33%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + LT RE L+ Sbjct: 110 AGATGYLLKAERPEELFTAIRAAASGRTALSPPVAQRVMTHLRNPQPELTPRERDILRHL 169 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A + Sbjct: 170 TQGLGNREIARALFISEATVKTHLGRIYQKLGVETRAGAVAVGKERRLL 218 >gi|118465644|ref|YP_883262.1| response regulator receiver domain-containing protein [Mycobacterium avium 104] gi|118166931|gb|ABK67828.1| response regulator receiver domain [Mycobacterium avium 104] Length = 221 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 19/233 (8%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + T + + + + FA+ + +R+ + +D Sbjct: 2 TDDATPTTVMVVDDHPIWRDAVARDLAESGFAVVATADGVATAQRRAGVVRPDVVVMDM- 60 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 +P+ L S + ++ S + + V+++ + A +A V Sbjct: 61 QLPDGDGAQATAAVLAVSPSSRVLVLSASDERDDVLQAVKAGAAGYLVKSASKAELAQAV 120 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETS 180 + V+ ++ + + LT+RET Sbjct: 121 TDTAAGRAVFTPS----------------LAGLVLGEYRRIAQSKDDGPTRPRLTDRETE 164 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 165 VLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|198276206|ref|ZP_03208737.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135] gi|198271018|gb|EDY95288.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135] Length = 213 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D L +K + LT+ E L+ G +++EIA + LS++TV + + KL+ Sbjct: 131 DLLREEEKEQNRMAPLTQTEKEILRAMALGKSTKEIAAERFLSIYTVATHRKNIFRKLEV 190 Query: 219 VNRIQAIAKAIRFGYI 234 N +AI A+R G + Sbjct: 191 NNAHEAIRYALRAGIV 206 >gi|163755204|ref|ZP_02162324.1| response regulator [Kordia algicida OT-1] gi|161324624|gb|EDP95953.1| response regulator [Kordia algicida OT-1] Length = 213 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 42/83 (50%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ + E K + + LT RE L+L ++EIAE L +SV+TV ++ + Sbjct: 129 RLTEILLNTSEESKNKQATHVKLTPREIDILKLIAQNKKTKEIAELLFISVNTVQSHKKN 188 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ + + + AI+ +I Sbjct: 189 LYSKLNIHSVSELVTYAIQHKFI 211 >gi|91782650|ref|YP_557856.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686604|gb|ABE29804.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 292 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 83/229 (36%), Gaps = 24/229 (10%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L+ L ++ + +A++ R++ + + ++ D I + Sbjct: 10 AERRDGLKALLRQIDRLARFNEAQD----WRQVERPLKRQRPDLLVI-DW-QDWMSIADT 63 Query: 68 LIE--TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + + P+ + + +E V+ + + + A + Sbjct: 64 RHLLSHYPDLRIAVLTDQISPVSVRELMDEGVLGVVPRDTDPCL---IVRAFEMVLLGGH 120 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + G + L + + + +R+ A L+ R+ ++ Sbjct: 121 YVPPGALAL---DPPLPPD-------IAIRPFDEK-SPPPRRTKLANGLSPRQQQIMRCV 169 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ IA LG+S TV +L S +L A NR A+ A+ G++ Sbjct: 170 HMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216 >gi|317127430|ref|YP_004093712.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315472378|gb|ADU28981.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 211 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 42/89 (47%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + +V+ ++ + +LT RE ++ G+G +++EIA +L LSV TV Sbjct: 123 LSLQDHVAAKVMPRLIKQSTEEVKVDPSLTPRELDIIRKIGEGRSNKEIAMQLSLSVGTV 182 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL+ +R Q AI+ + Sbjct: 183 KNHISIILDKLELRDRTQIAIYAIKHHVV 211 >gi|255746558|ref|ZP_05420505.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS 101] gi|262158852|ref|ZP_06029965.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE 91/1] gi|262168521|ref|ZP_06036217.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27] gi|255736312|gb|EET91710.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS 101] gi|262023050|gb|EEY41755.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27] gi|262029425|gb|EEY48076.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE 91/1] Length = 201 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 73 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 132 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 133 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 192 Query: 227 KAIRF 231 + Sbjct: 193 LYLER 197 >gi|297193607|ref|ZP_06911005.1| response regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151843|gb|EFH31371.1| response regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 207 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + + R +A +LT+RE L Sbjct: 97 AGATGYLLKAERPEELFAAIRAAAQGRTALSAPVASRVMDRMRGAAGPSLTDRERDILGQ 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A A + Sbjct: 157 LARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKEQRLL 206 >gi|293415492|ref|ZP_06658135.1| two-component system [Escherichia coli B185] gi|291433140|gb|EFF06119.1| two-component system [Escherichia coli B185] Length = 225 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 81 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SERVNQYLHEREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAATIL 217 >gi|297203493|ref|ZP_06920890.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197714466|gb|EDY58500.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 239 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 13/158 (8%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 P+ T+ + L + + P L GY+ + + + Sbjct: 87 PVRCSIEDLATMAARTRVLVLSGADE----EAVIVPA-LRAGVRGYLRKGASQQEILRCL 141 Query: 146 IIEAHGACYQVITDFLELF--------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A G + L + ++A LTERE L GYT+ IA Sbjct: 142 HVIAAGGAAFGVGTAERLSSFFDGAQPETSNAAFPFLTERERQVLDFLARGYTNRRIART 201 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L LS TV ++ KL +R +A +A G C Sbjct: 202 LVLSEKTVRNHVSHLLAKLQVNDRTEAALRAKEAGLGC 239 >gi|162456402|ref|YP_001618769.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161166984|emb|CAN98289.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 233 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V+ + + S LT RE L+L G ++ E A +L +S TV + Sbjct: 149 IAGAVVRAMRKPASEGSGGLDALTPRERQVLRLLAAGVSTRETAARLTISPKTVETHRVR 208 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL + ++ A+R G I Sbjct: 209 IYAKLGCKSAVELTRIAVRTGLI 231 >gi|70729936|ref|YP_259675.1| sensory box transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344235|gb|AAY91841.1| sensory box transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 495 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKL 198 EV+ +A +I + RS+ A LT RE L L G +EIA +L Sbjct: 395 EVMRDASWFSQTLIEKLANVRNTRSAQAPAVTSAELTTREREVLGLIYQGLADKEIAAQL 454 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +TV ++ + KLD +R +AI A G Sbjct: 455 QLAPNTVRNHVATLYSKLDVHSRGEAIVWARERGL 489 >gi|325695633|gb|EGD37533.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 199 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|300784747|ref|YP_003765038.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794261|gb|ADJ44636.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 42/84 (50%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A ++ A+ LTERE L+L G ++ EIA +L + V TV ++G Sbjct: 130 AAIRRLAAQHAPAPAGDGLASAGLTERERDVLRLVAAGLSNVEIASELYVGVQTVKTHVG 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL A +R QA+ +A G++ Sbjct: 190 NVLAKLGARDRTQAVIRAYDSGFV 213 >gi|317482156|ref|ZP_07941179.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916390|gb|EFV37789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] Length = 232 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228 Query: 232 GYI 234 + Sbjct: 229 RIV 231 >gi|297564146|ref|YP_003683119.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848595|gb|ADH70613.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 17/160 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + ++ R+ +A V V+ ++ + Sbjct: 64 LDVHLPGGGGVEVLRRVLAQHPQIRFLALSVSDAAEDVIGVVRGGARGYVTKTISGRELA 123 Query: 148 EAH------------GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEI 194 +A V+ F LT+RE L+ GY +E+ Sbjct: 124 DAIVRVADGDAVFSPRLAGFVLDAFSATDAPPVDPELDRLTQREREVLRHIARGYAYKEV 183 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L +SV TV ++ S KL NR + A + Sbjct: 184 AKELFISVKTVETHVSSVLRKLQLSNRHELSRWATARRLV 223 >gi|227508387|ref|ZP_03938436.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192037|gb|EEI72104.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 219 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R+L++RE L GYT++EIA +L +S TV A+ S KL +R + + A+ Sbjct: 155 RSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPELVRYAVHH 214 Query: 232 GYI 234 I Sbjct: 215 HLI 217 >gi|221635975|ref|YP_002523851.1| two-component response regulator [Thermomicrobium roseum DSM 5159] gi|221157551|gb|ACM06669.1| two-component response regulator [Thermomicrobium roseum DSM 5159] Length = 213 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +++ L+ + S L+L G ++ EIA++L LS +TV Y+ +L A NR Sbjct: 140 RLRNRKAITDIPLSPHQLSVLRLIAQGLSNREIADRLFLSENTVKGYVQEVLRRLGARNR 199 Query: 222 IQAIAKAIRFGYI 234 ++A+ A G++ Sbjct: 200 LEAVMIANERGWL 212 >gi|307313911|ref|ZP_07593526.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306899185|gb|EFN29823.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 254 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 46/96 (47%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + A + A Q ++ ++L +K LT RET L L G ++ I Sbjct: 146 AALLRRSAPRGLAGGLAAQKQASSEDIDLERKIDFGQDLLTMRETQVLDLICVGMQNKII 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A++LGLS +TV ++ + K++ NR +A A+ R Sbjct: 206 ADRLGLSENTVKVHVRNIYKKMNVRNRTEAAARYFR 241 >gi|237718329|ref|ZP_04548810.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|229452262|gb|EEO58053.1| transcriptional regulator [Bacteroides sp. 2_2_4] Length = 255 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G S+EIA L +S++TVN + + KL A N I+A+ A R Sbjct: 191 EPLTNRELEVLRLMKQGLLSKEIANTLKVSINTVNTHRQNILQKLKANNSIEAVNFAQRL 250 Query: 232 GY 233 G Sbjct: 251 GL 252 >gi|297561144|ref|YP_003680118.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845592|gb|ADH67612.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 42/133 (31%), Gaps = 16/133 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------------QVITDFL 161 I + E I+ A + + Sbjct: 80 IVLTTFDNDDYVWGALRAGAHGFLLKRTPPEDILAAIRLAHRGDTLLFPTALRHLAATQP 139 Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + A LT+RE+ L L G T+ EIA++L L TV ++ KL +R Sbjct: 140 AAPTPAARAVATLTQRESQTLTLMAQGLTNAEIADRLFLGTETVKTHVSHILTKLGVRDR 199 Query: 222 IQAIAKAIRFGYI 234 QA+ A G I Sbjct: 200 TQAVIAAYDSGLI 212 >gi|294056650|ref|YP_003550308.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293615983|gb|ADE56138.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + L +E I+E + L+ RE L L G +++++A+K Sbjct: 110 DIELLHEAIVEVAAGGTYFPASIARTMSAHTEDQD-LSARELQVLHLVAAGSSNKDVADK 168 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S+ TV ++ + KL +R Q + AIR G + Sbjct: 169 LSISLPTVKMHMTNIMKKLSVYDRTQLVIAAIRKGIV 205 >gi|224283771|ref|ZP_03647093.1| response regulator of two-component system [Bifidobacterium bifidum NCIMB 41171] Length = 277 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R L+ RE ++L GYT +E+A +L +S+ TV ++ + KL NR + Sbjct: 207 ARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRTE 266 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 267 LTRWAADRRIV 277 >gi|153837454|ref|ZP_01990121.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|149749254|gb|EDM60039.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|328470183|gb|EGF41094.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 217 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + +++ + + + LT RE L Sbjct: 112 DKVMMGLKGILNGENWLSRDILNQLIGHLLSLNNTVGELETKLEMELTRREMQVLSALCQ 171 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G ++ +IA+ L +S HTV ++L S KL+ NR+QAI A R Sbjct: 172 GGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215 >gi|238898060|ref|YP_002923741.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465819|gb|ACQ67593.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 243 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 13/186 (6%) Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + D + + + W + ++ G F Sbjct: 50 WFEFYIQNKYQNIDPIIIMSLNRITSFSWDENIM-INLNLKLSKIFKMSKTYNITHGYTF 108 Query: 121 PVRLGFHKNGYVIFTSEFLMLAN--EVIIE----AHGACYQVITDFL------ELFKKRS 168 V + + ++ +A E+II V L ++ + Sbjct: 109 IVHDHKNNLALLSMMADQDYIAALNELIISNKDKLQTLLITVHDKMLFLYKEMDIKHHKR 168 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + RE L + G T EEIA LG+ + TV ++G+ KL +N AI Sbjct: 169 EDKEMFSTRENEILYWSSVGKTYEEIAMILGIKLGTVKFHMGNVVKKLGVINGKHAIRLG 228 Query: 229 IRFGYI 234 + I Sbjct: 229 VELKLI 234 >gi|254430340|ref|ZP_05044043.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001] gi|197624793|gb|EDY37352.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001] Length = 99 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + + S R+L+ERE + L +G T++EIA L +S TV+ ++ + K Sbjct: 5 LHGAWSMGRELQQSQERDLSERELEIIALVAEGLTNQEIAGTLTISKRTVDNHVSNIFTK 64 Query: 216 LDAVNRIQAIAKAIRFGYIC 235 A NR+ + A+ G IC Sbjct: 65 TGAKNRVALLNWAMDHGKIC 84 >gi|153211868|ref|ZP_01947715.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587] gi|153800895|ref|ZP_01955481.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3] gi|153824326|ref|ZP_01976993.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2] gi|153829689|ref|ZP_01982356.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39] gi|229514128|ref|ZP_04403589.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21] gi|229528499|ref|ZP_04417890.1| nitrate/nitrite response regulator protein [Vibrio cholerae 12129(1)] gi|124116944|gb|EAY35764.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587] gi|124123605|gb|EAY42348.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3] gi|148874810|gb|EDL72945.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39] gi|149741880|gb|EDM55909.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2] gi|229334861|gb|EEO00347.1| nitrate/nitrite response regulator protein [Vibrio cholerae 12129(1)] gi|229348108|gb|EEO13066.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21] Length = 208 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 80 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 139 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199 Query: 227 KAIRF 231 + Sbjct: 200 LYLER 204 >gi|56421302|ref|YP_148620.1| hypothetical protein GK2767 [Geobacillus kaustophilus HTA426] gi|56381144|dbj|BAD77052.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 500 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +L+ RE L+L +G ++ E A++L LS +TV Y+ + K++A NR + Sbjct: 430 RSDLVQPTPHLSPREIEVLKLVAEGASTYEAAKRLHLSEYTVRDYVSAILQKMNAKNRTE 489 Query: 224 AIAKAIRFGYI 234 AI KAIR G I Sbjct: 490 AIVKAIRDGII 500 >gi|306830765|ref|ZP_07463929.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427112|gb|EFM30220.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 198 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L+++E LQL G T++EIA+ L LS TV Y+ S KL A NR Sbjct: 126 ELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNR 185 Query: 222 IQAIAKAIRFGYI 234 ++A A G++ Sbjct: 186 VEATRIAEEHGWV 198 >gi|296160668|ref|ZP_06843483.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295889194|gb|EFG68997.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 292 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 83/229 (36%), Gaps = 24/229 (10%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L+ L ++ + +A++ R++ + + ++ D I + Sbjct: 10 AERRDGLKALLRQIDRLARFNEAQD----WRQVERPLKRQRPDLLVI-DW-QDWMSIADT 63 Query: 68 LIE--TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + + P+ + + +E V+ + + + A + Sbjct: 64 RHLLSHYPDLRIAVLTDQISPVSVRELMDEGVLGVVPRDTDPCL---IVRAFEMVLLGGH 120 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + G + L + + + +R+ A L+ R+ ++ Sbjct: 121 YVPPGALAL---DPPLPPD-------IAIRPFDEK-SPPPRRTKLANGLSPRQQQIMRCV 169 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ IA LG+S TV +L S +L A NR A+ A+ G++ Sbjct: 170 HMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216 >gi|302545305|ref|ZP_07297647.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462923|gb|EFL26016.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 209 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V A G + +L + R + L+ RE L+L Sbjct: 100 AGAAGYLLKGSSRQELIGAVQTAARGETVLTPSLAGKLLRTRVAEPSPLSGRECEVLRLV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G T+ EI KL ++ TV +L + KL +R A+ A+ G + Sbjct: 160 GQGLTNAEIGAKLFVAEATVKTHLLRSFKKLGVSDRTAAVMTAMERGLL 208 >gi|255035483|ref|YP_003086104.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254948239|gb|ACT92939.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 207 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSA 170 + I ++ G + ++ A + +E C + E Sbjct: 83 HNERSVIMSMLQSGASGYVLKNAIGDDIVAALQAAMEGQIYLCAETQKALNEAPGTEPKE 142 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G GYT+++IA +L +S HTV ++ + K N + A Sbjct: 143 IPRLTRREKEILELIGQGYTTQQIAAELFISTHTVESHRKNLKEKFGVPNTATVVRMAAE 202 Query: 231 FGY 233 G Sbjct: 203 LGL 205 >gi|90579871|ref|ZP_01235679.1| putative nitrate/nitrite response regulator protein [Vibrio angustum S14] gi|90438756|gb|EAS63939.1| putative nitrate/nitrite response regulator protein [Vibrio angustum S14] Length = 208 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 11/134 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157 + + + + V V+ + +IE + Sbjct: 68 LIAMRDEGILACIVILTVSDSRSDIKTVLNAGADGYLLKDTEPDELIEQLKSALCGGKAY 127 Query: 158 TDFLE--LFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +D ++ L + LT+RET LQ G + +IAE+L +S TV ++ S Sbjct: 128 SDIVKECLESPNTPTNILSQLTDRETQILQEVAKGQRNRQIAEQLFISEATVKVHMKSLL 187 Query: 214 VKLDAVNRIQAIAK 227 KL +R A Sbjct: 188 KKLQVKSRTAATIL 201 >gi|323968034|gb|EGB63445.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|327252458|gb|EGE64117.1| response regulator [Escherichia coli STEC_7v] Length = 215 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIAAVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|291459358|ref|ZP_06598748.1| putative nitrate/nitrite response regulator protein NarL [Oribacterium sp. oral taxon 078 str. F0262] gi|291417957|gb|EFE91676.1| putative nitrate/nitrite response regulator protein NarL [Oribacterium sp. oral taxon 078 str. F0262] Length = 220 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L +K+ LTERE +L GYT+ EI+ +L ++ T ++ Sbjct: 122 FYSAALVDPRLSEEEKKLGT---LTEREREVYELMCQGYTNLEISARLFITEGTAKRHVS 178 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL + NR++A+ ++ + GY+ Sbjct: 179 NILSKLGSKNRVEAVIQSGQKGYL 202 >gi|288923880|ref|ZP_06417961.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344773|gb|EFC79221.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 222 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 7/120 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARN-----L 174 +R G + E L+ A V+ +T L + L Sbjct: 97 LRAGAAGFLLKDASRERLVEAIRVLHAGDALLSPAVTRRLVETFAARTRPPTPPGLLDLL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ EIA +L ++ TV +++G+ KL +R+QA+ A G + Sbjct: 157 TPREREVLVLVARGLSNTEIAGRLVVTEATVKSHVGAILTKLGLRDRVQAVVLAYENGVV 216 >gi|271968610|ref|YP_003342806.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511785|gb|ACZ90063.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 155 QVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +++ + LTERE ++L G T++E+A +L +S+ TV +LGS Sbjct: 135 RLLEHLAHPRSGGARPLTEPLTERELDVVRLVARGRTNQEVAAELFVSLSTVKTHLGSIQ 194 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL A NR++ A A G + Sbjct: 195 AKLGARNRVEIAAWAWESGVV 215 >gi|153820697|ref|ZP_01973364.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae B33] gi|126521740|gb|EAZ78963.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae B33] Length = 195 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 67 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 126 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 127 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 186 Query: 227 KAIRF 231 + Sbjct: 187 LYLER 191 >gi|314968011|gb|EFT12110.1| transcriptional regulator, LuxR family [Propionibacterium acnes HL037PA1] Length = 77 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 6 AEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYE 65 Query: 231 FGYI 234 G I Sbjct: 66 SGLI 69 >gi|297538080|ref|YP_003673849.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257427|gb|ADI29272.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 212 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ L + L+ RE G T+ EIAE L LS TV +L + Sbjct: 131 VAQQMAIQQLSGDQN---PVDVLSPREFEVFMALAKGKTTNEIAETLFLSPRTVGTHLYN 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+A N + A+R G + Sbjct: 188 IKQKLNANNSAEIALIAMRSGLL 210 >gi|260655487|ref|ZP_05860975.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi E3_33 E1] gi|260629935|gb|EEX48129.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi E3_33 E1] Length = 212 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE L A G +S+E+A +L +S TV +L S KL A N+ +A+ A++ Sbjct: 142 TEALSPREREVLLCAARGLSSKEVAAQLYISERTVQTHLASVYDKLGAHNKTEAMLLALK 201 Query: 231 FGY 233 G Sbjct: 202 HGL 204 >gi|238788099|ref|ZP_04631894.1| Two component transcriptional regulator, LuxR family [Yersinia frederiksenii ATCC 33641] gi|238723686|gb|EEQ15331.1| Two component transcriptional regulator, LuxR family [Yersinia frederiksenii ATCC 33641] Length = 194 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + I V + +I E+++E + Sbjct: 57 LRNEGVDARIIVLTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRHAAKGEKVFSNE 116 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 117 VAQYLSSRHEQVNPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 176 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 177 NVRSRVAATIM 187 >gi|229490268|ref|ZP_04384110.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229322800|gb|EEN88579.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 224 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 155 QVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +IT FL + + S + LT RE + L G +++EIA +L +S T ++ Sbjct: 135 ALITRFLSIPSRADSTSGIFGQLTPRELEVVTLVAMGMSNDEIAAELVISAVTAKTHVNR 194 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 A KLD +R Q + A + G + Sbjct: 195 AMTKLDVRDRAQLVVLAYQCGLV 217 >gi|159898419|ref|YP_001544666.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891458|gb|ABX04538.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 867 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 7/97 (7%) Query: 145 VIIEAHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIAEK 197 + HG +I L F KR L+ERE LQ G T EI E+ Sbjct: 768 QLASDHGFNSPLIKHALIEFAKRQPSVQPQTHTLERLSERELEVLQQIATGLTDREIGER 827 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS++TV + + KL+ NR QA+A+A G + Sbjct: 828 LYLSMYTVKVHARNIYAKLEVSNRTQAVARARTLGLL 864 >gi|90021218|ref|YP_527045.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950818|gb|ABD80833.1| transcriptional regulator, XRE family [Saccharophagus degradans 2-40] Length = 227 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 157 ITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 IT + + A LTER+ L G +++EIA +L +S TV ++ + Sbjct: 145 ITHAASPAPQTAPPATGDHQLTERQLHVLHEMLKGLSNKEIARELNMSPSTVKVHVAAIL 204 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 + + NR QA+A A + I Sbjct: 205 REFNVKNRTQAVAHARQKNII 225 >gi|83646727|ref|YP_435162.1| transcriptional regulator NarL [Hahella chejuensis KCTC 2396] gi|83634770|gb|ABC30737.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 212 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 15/138 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-----------A 149 + + I V + E I+E Sbjct: 69 LRAIRAAGVDSRIIMLTVSDNEADVVNCFRAGADGYLLKDMEPEDILEKIKQVTLGKMAI 128 Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ L + + + +LT RE L G++++ IA L +S TV ++ Sbjct: 129 SERLTEILASALRKPVEAADPSASLTSREYEILTRIAQGHSNKVIARDLNISDGTVKVHV 188 Query: 210 GSATVKLDAVNRIQAIAK 227 K+ +R++A Sbjct: 189 KHILKKMGMRSRVEAAVW 206 >gi|107025864|ref|YP_623375.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692952|ref|YP_838485.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737783|ref|YP_001779043.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105895238|gb|ABF78402.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650952|gb|ABK11592.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169819971|gb|ACA94553.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 302 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + A + L Sbjct: 61 TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFARERVESLYLHEAFT--PATYRGDYV 118 Query: 67 ILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQL-SVRLEGGLLPFA 116 D +PI+W + + + + ++ + Sbjct: 119 RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDDAPSVSPAALDGFLQTMQDDGMCS 178 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 179 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 237 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 238 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 297 Query: 230 RFGYI 234 + I Sbjct: 298 KLELI 302 >gi|332280465|ref|ZP_08392878.1| transcriptional regulator [Shigella sp. D9] gi|332102817|gb|EGJ06163.1| transcriptional regulator [Shigella sp. D9] Length = 158 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 89 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 148 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 149 TALRMG-VC 156 >gi|327251604|gb|EGE63290.1| transcriptional regulator, LuxR family protein [Escherichia coli STEC_7v] Length = 148 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 79 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 138 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 139 TALRMG-VC 146 >gi|326334296|ref|ZP_08200514.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325947905|gb|EGD40027.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 211 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + L + A G + L ++ +S A ++ RE L+L Sbjct: 100 DAGAAGYLLKDAPPDELFRAIRGTARGETVLAPSVATRLLQRAASPAPKVSPREVEILRL 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++E+A +L +S TV ++L KL R A+A AI + Sbjct: 160 LAKGLGNKEMARELLVSEATVKSHLSHIYTKLGVDTRAGAVATAIERRIL 209 >gi|317501835|ref|ZP_07960020.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896725|gb|EFV18811.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium 8_1_57FAA] Length = 199 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE ++ G G T EIA++L +S T+ ++ S KL A N I+A K Sbjct: 129 PPLLDPLTDREAEIIKAIGTGKTKHEIAQELYISERTLYNHIQSIYDKLGAKNAIEAYNK 188 Query: 228 AIRFGYI 234 AI GYI Sbjct: 189 AIALGYI 195 >gi|312972929|ref|ZP_07787102.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] gi|310332871|gb|EFQ00085.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] Length = 123 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 54 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 113 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 114 TALRMG-VC 121 >gi|307310532|ref|ZP_07590180.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|306909427|gb|EFN39922.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|323183401|gb|EFZ68798.1| transcriptional regulator, LuxR family protein [Escherichia coli 1357] Length = 147 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 78 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 137 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 138 TALRMG-VC 145 >gi|300936213|ref|ZP_07151149.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300458670|gb|EFK22163.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] Length = 221 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 152 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 211 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 212 TALRMG-VC 219 >gi|300898079|ref|ZP_07116447.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|301027468|ref|ZP_07190805.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|331674332|ref|ZP_08375092.1| putative 2-component transcriptional regulator [Escherichia coli TA280] gi|300358217|gb|EFJ74087.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300394976|gb|EFJ78514.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|323966643|gb|EGB62075.1| luxR family protein regulatory protein [Escherichia coli M863] gi|331068426|gb|EGI39821.1| putative 2-component transcriptional regulator [Escherichia coli TA280] Length = 221 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 152 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 211 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 212 TALRMG-VC 219 >gi|298251862|ref|ZP_06975665.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546454|gb|EFH80322.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 42/82 (51%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ + + + ++ L+ERE L+L DG ++ EIA +L +S TV ++ + Sbjct: 134 VAARVVHELRKSKQTSTNPFAELSERELDVLRLIADGRSNAEIASRLSISEKTVKGHVSN 193 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL ++R QA A + G Sbjct: 194 ILSKLYLLDRTQAAVFAWQQGL 215 >gi|293412200|ref|ZP_06654923.1| predicted protein [Escherichia coli B354] gi|291468971|gb|EFF11462.1| predicted protein [Escherichia coli B354] Length = 210 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 201 TALRMG-VC 208 >gi|293416096|ref|ZP_06658736.1| response regulatory protein ygeK [Escherichia coli B185] gi|331654339|ref|ZP_08355339.1| putative 2-component transcriptional regulator [Escherichia coli M718] gi|291432285|gb|EFF05267.1| response regulatory protein ygeK [Escherichia coli B185] gi|331047721|gb|EGI19798.1| putative 2-component transcriptional regulator [Escherichia coli M718] Length = 210 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 201 TALRMG-VC 208 >gi|218706350|ref|YP_002413869.1| hypothetical protein ECUMN_3185 [Escherichia coli UMN026] gi|293406343|ref|ZP_06650269.1| predicted protein [Escherichia coli FVEC1412] gi|298382079|ref|ZP_06991676.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|331664414|ref|ZP_08365320.1| putative 2-component transcriptional regulator [Escherichia coli TA143] gi|218433447|emb|CAR14349.1| conserved hypothetical protein, putative Bacterial regulatory protein LuxR family [Escherichia coli UMN026] gi|284922792|emb|CBG35880.1| putative two-component response regulator [Escherichia coli 042] gi|291426349|gb|EFE99381.1| predicted protein [Escherichia coli FVEC1412] gi|298277219|gb|EFI18735.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|323978530|gb|EGB73612.1| luxR family protein regulatory protein [Escherichia coli TW10509] gi|331058345|gb|EGI30326.1| putative 2-component transcriptional regulator [Escherichia coli TA143] Length = 210 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 201 TALRMG-VC 208 >gi|157157590|ref|YP_001464190.1| LuxR family transcriptional regulator [Escherichia coli E24377A] gi|209920305|ref|YP_002294389.1| hypothetical protein ECSE_3114 [Escherichia coli SE11] gi|300815723|ref|ZP_07095947.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300820647|ref|ZP_07100798.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300906614|ref|ZP_07124305.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|301302994|ref|ZP_07209121.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|309793907|ref|ZP_07688332.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|331678834|ref|ZP_08379508.1| putative 2-component transcriptional regulator [Escherichia coli H591] gi|157079620|gb|ABV19328.1| transcriptional regulator, LuxR family [Escherichia coli E24377A] gi|209913564|dbj|BAG78638.1| conserved hypothetical protein [Escherichia coli SE11] gi|300401653|gb|EFJ85191.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300526911|gb|EFK47980.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300531652|gb|EFK52714.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300841658|gb|EFK69418.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|308122314|gb|EFO59576.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|315256718|gb|EFU36686.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1] gi|323160002|gb|EFZ45966.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323162555|gb|EFZ48405.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323163404|gb|EFZ49231.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|324021194|gb|EGB90413.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3] gi|331073664|gb|EGI44985.1| putative 2-component transcriptional regulator [Escherichia coli H591] Length = 148 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 79 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 138 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 139 TALRMG-VC 146 >gi|157162307|ref|YP_001459625.1| LuxR family transcriptional regulator [Escherichia coli HS] gi|170018901|ref|YP_001723855.1| two component LuxR family transcriptional regulator [Escherichia coli ATCC 8739] gi|157067987|gb|ABV07242.1| transcriptional regulator, LuxR family [Escherichia coli HS] gi|169753829|gb|ACA76528.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|323941628|gb|EGB37808.1| luxR family protein regulatory protein [Escherichia coli E482] gi|332344746|gb|AEE58080.1| response regulator protein [Escherichia coli UMNK88] Length = 210 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 201 TALRMG-VC 208 >gi|89109637|ref|AP_003417.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|170082422|ref|YP_001731742.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|256024645|ref|ZP_05438510.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|307139537|ref|ZP_07498893.1| DNA-binding transcriptional regulator [Escherichia coli H736] gi|85675670|dbj|BAE76923.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|169890257|gb|ACB03964.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|326339074|gb|EGD62889.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1044] gi|326343044|gb|EGD66812.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1125] Length = 147 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 78 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 137 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 138 TALRMG-VC 145 >gi|20141967|sp|Q46791|YGEK_ECOLI RecName: Full=Putative uncharacterized response regulatory protein ygeK Length = 210 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 201 TALRMG-VC 208 >gi|15832966|ref|NP_311739.1| hypothetical protein ECs3712 [Escherichia coli O157:H7 str. Sakai] gi|168747683|ref|ZP_02772705.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|168753777|ref|ZP_02778784.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|168759967|ref|ZP_02784974.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|168766832|ref|ZP_02791839.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|168775716|ref|ZP_02800723.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|168778853|ref|ZP_02803860.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|168799972|ref|ZP_02824979.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|195936460|ref|ZP_03081842.1| hypothetical protein EscherichcoliO157_08342 [Escherichia coli O157:H7 str. EC4024] gi|208808850|ref|ZP_03251187.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208813228|ref|ZP_03254557.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208818554|ref|ZP_03258874.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209398226|ref|YP_002272320.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|217327388|ref|ZP_03443471.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254794795|ref|YP_003079632.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|20140955|sp|P58664|YGEK_ECO57 RecName: Full=Uncharacterized response regulatory protein ygeK gi|13363184|dbj|BAB37135.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187768739|gb|EDU32583.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|188017817|gb|EDU55939.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|189003396|gb|EDU72382.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|189358682|gb|EDU77101.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|189363784|gb|EDU82203.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|189369373|gb|EDU87789.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|189377667|gb|EDU96083.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|208728651|gb|EDZ78252.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208734505|gb|EDZ83192.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208738677|gb|EDZ86359.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209159626|gb|ACI37059.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|209747612|gb|ACI72113.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747614|gb|ACI72114.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747616|gb|ACI72115.1| hypothetical protein ECs3712 [Escherichia coli] gi|217319755|gb|EEC28180.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254594195|gb|ACT73556.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|320189186|gb|EFW63845.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. EC1212] Length = 210 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 201 TALRMG-VC 208 >gi|15803376|ref|NP_289409.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 EDL933] gi|261226155|ref|ZP_05940436.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261256590|ref|ZP_05949123.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|300950599|ref|ZP_07164501.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300958180|ref|ZP_07170334.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|301026137|ref|ZP_07189611.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|301643812|ref|ZP_07243849.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|331643538|ref|ZP_08344669.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] gi|12517351|gb|AAG57968.1|AE005514_5 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|887806|gb|AAA83037.1| ORF_f148 [Escherichia coli] gi|299879832|gb|EFI88043.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|300315132|gb|EFJ64916.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|300450079|gb|EFK13699.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|301077845|gb|EFK92651.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|315137458|dbj|BAJ44617.1| putative 2-component transcriptional regulator [Escherichia coli DH1] gi|323935789|gb|EGB32092.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] gi|331037009|gb|EGI09233.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] Length = 148 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 79 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 138 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 139 TALRMG-VC 146 >gi|28900213|ref|NP_799868.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260365852|ref|ZP_05778348.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|260880775|ref|ZP_05893130.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|260896515|ref|ZP_05905011.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|28808524|dbj|BAC61701.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|308089272|gb|EFO38967.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308092579|gb|EFO42274.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308114985|gb|EFO52525.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] Length = 217 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + +++ + + + LT RE L Sbjct: 112 DKVMMGLKGILNGENWLSRDILNQLIGHLLSLNNTVGELETKLEMELTRREMQVLSALCQ 171 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G ++ +IA+ L +S HTV ++L S KL+ NR+QAI A R Sbjct: 172 GGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215 >gi|288904765|ref|YP_003429986.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|288731490|emb|CBI13044.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] Length = 198 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L+++E LQL G T++EIA+ L LS TV Y+ S KL A NR Sbjct: 126 ELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNR 185 Query: 222 IQAIAKAIRFGYI 234 ++A A G++ Sbjct: 186 VEATRIAEEHGWV 198 >gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 14/228 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALD---FPRRQQLICELHNYDLDSGDIPNILIE 70 + + ++ ++ F + ++A + ++ + + + D L + Sbjct: 8 VDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDIMMPQVDGYQFLKQ 67 Query: 71 TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D L LP+I+ + + + + + L P IA L Sbjct: 68 LRDDPRLA-----SLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLLEK 122 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQLA 185 + E E+ AH ++T + + +LT RE S L L Sbjct: 123 RISQTTVAGEDSENM-EIAKLAHEIAKIKDLLTPRTGISQTPPPFTIDLTPREQSVLNLV 181 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA KL SV V Y+ K +R + + A+ G Sbjct: 182 AQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|239621538|ref|ZP_04664569.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515413|gb|EEQ55280.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 231 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228 Query: 232 GYI 234 + Sbjct: 229 RIV 231 >gi|169627165|ref|YP_001700814.1| nitrate/nitrite response transcriptional regulatory protein NarL [Mycobacterium abscessus ATCC 19977] gi|169239132|emb|CAM60160.1| Possible nitrate/nitrite response transcriptional regulatory protein NarL (LuxR family) [Mycobacterium abscessus] Length = 215 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF---------HKNGYVIFTSEF 138 + Q++ + LP + G++ S Sbjct: 55 DVALVDYRMPELDGTQVAAAVRRDELPTRVLLLSAHDDAAIVYRALEEGAAGFLSKESTR 114 Query: 139 LMLANEVIIEAHGACYQVITDFL----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 L V+ A G + E+ K+ A +L+ RE L++ G T I Sbjct: 115 TELVGAVLDCARGRDVVAASLTAGLAGEIRKRAQPAGPSLSTREREVLRMIAAGQTVPAI 174 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L L+ TV ++ KL +R A+A+A+R G + Sbjct: 175 ARALFLAPSTVKTHVQRLYEKLGVGDRAAAVAEAMRRGLL 214 >gi|118473768|ref|YP_890456.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118175055|gb|ABK75951.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSA 170 L + V G + L+ A I A + + R+ Sbjct: 93 FLDEDLVVRAVHAGARGYVVKDVDTTELVRAIRAISSGDSAFDSRSAAAVVRSLSGRTEP 152 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L+L G ++ +I EKL +S T ++ + KLD R +A+ A + Sbjct: 153 REQLTDREIEVLRLLAAGLSNNKIGEKLFISATTAKFHVSNIMRKLDVSRRAEAVYAASK 212 Query: 231 FGYI 234 G I Sbjct: 213 RGLI 216 >gi|269956981|ref|YP_003326770.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305662|gb|ACZ31212.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 937 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 9/152 (5%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 +W ++ + E Q V G R G + L V Sbjct: 788 VWSALFAAELGEGPWQAVVDAHGPAHLRPYAL--WRDGEALVDAGDRAAARDRLEAAVAE 845 Query: 148 EAHGACYQVITDFLELFKK-------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 H V L ++ R +A LT RE L L +G T+ +IA +L + Sbjct: 846 AEHIGAGLVTAKARALLRRAGLTAGGRVTAPDALTAREEQVLALVAEGLTNGQIAARLFI 905 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 SV TV+ ++ + KL +R +A K +R G Sbjct: 906 SVKTVSVHVSAILRKLGVSSRTEAALKGVRKG 937 >gi|326331829|ref|ZP_08198116.1| putative LuxR-family regulator [Nocardioidaceae bacterium Broad-1] gi|325950326|gb|EGD42379.1| putative LuxR-family regulator [Nocardioidaceae bacterium Broad-1] Length = 973 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + + ++ + K++ + + LT RE+ L L Sbjct: 863 RATGDVAASRVTADKARETARRLGLQPLLDELRSLGATAVKQQPATSTALTPRESEILTL 922 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI ++L +S TV+ ++ + KL A +R +A A A R I Sbjct: 923 VAAGRSNGEIGKQLFISTKTVSVHVSNILGKLGAGSRTEAAAIARRQQLI 972 >gi|323703023|ref|ZP_08114679.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] gi|323532036|gb|EGB21919.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] Length = 213 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE++ S +L G + EIAE+L LS +T+ ++ + KL+ NRI +AK + Sbjct: 153 LTEQQISIAKLVAQGLKNREIAEQLYLSENTIKFHIQNIMRKLNVNNRIALVAKLLEKDI 212 Query: 234 I 234 I Sbjct: 213 I 213 >gi|311280044|ref|YP_003942275.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308749239|gb|ADO48991.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 216 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G ++ EIA L +S +TV ++ + KL NR QA+ A R Sbjct: 156 ELTRREKEILCKLRQGASNIEIAHLLFISENTVKTHIYNLFKKLSVKNRTQAVFWANRN 214 >gi|302517773|ref|ZP_07270115.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302426668|gb|EFK98483.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 219 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179 L +G+++ + + + V + A G L + + LT RE Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADHHGGRAPAPFPGLTGREG 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G++ Sbjct: 156 EVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210 >gi|170697201|ref|ZP_02888295.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137821|gb|EDT06055.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 518 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200 + +A +I + + + A LT RE L G +EIA +LGL Sbjct: 398 AMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGL 457 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +TV ++ + KLD +R +AI A G + Sbjct: 458 APNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|291300805|ref|YP_003512083.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570025|gb|ADD42990.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G ++ +IA ++ LSV TV ++ + KL NR+QA A R G Sbjct: 151 RLTRREREVLVLIAEGMSNSDIAARMFLSVGTVKDHVSAILTKLGINNRVQAALLAERAG 210 Query: 233 YI 234 + Sbjct: 211 IL 212 >gi|308176214|ref|YP_003915620.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743677|emb|CBT74649.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 224 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA +LT RE L +G ++ EIAE+L + + TV ++ S +KL +R+QAI A Sbjct: 150 SADADLTPREREVLAALAEGSSNAEIAEQLFIEIGTVKTHVSSIILKLGVRDRVQAIVWA 209 Query: 229 IR-FGY 233 + G+ Sbjct: 210 YQHHGW 215 >gi|294010385|ref|YP_003543845.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673715|dbj|BAI95233.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 265 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 79/230 (34%), Gaps = 13/230 (5%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH--NYDLDSGDIPNILIETYGDD 75 + + R + + S + + + + Sbjct: 32 ERLRDAVMDLCGLRTAVTHNVASREPMRDGNGAVLASEIFGFRGEEPRWWEVPQLALSSP 91 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNGYV 132 + P + T + + + L + A I P+ L F + G Sbjct: 92 IVHACRVEAEPFWCNAHGFFTRLPNPLLDVIDLHDFRIRAMTAAAIVVPIHLPFGQIGAA 151 Query: 133 IF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQL 184 F ++ + ++++ + + +LT+RE CL+ Sbjct: 152 SFLSPEPEANDLSDAYACAADALAVLARAFVQSYVKVTARARPGLGSISLTKREVECLRW 211 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T+EEI LGL TV ++ SA+VKLDAVNR Q + KA + G++ Sbjct: 212 AAAGKTNEEIGIILGLQRTTVRFHIRSASVKLDAVNRDQTMFKAAQLGFL 261 >gi|118616214|ref|YP_904546.1| nitrate/nitrite response regulator protein NarL [Mycobacterium ulcerans Agy99] gi|118568324|gb|ABL03075.1| nitrate/nitrite response regulator protein NarL [Mycobacterium ulcerans Agy99] Length = 216 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + LP + G+++ S Sbjct: 56 DVALLDYRMPRMDGAQVAAAVRSNGLPTRVLLISAHDESAIVYQALQQGAAGFLLKDSTR 115 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ + A L+ RE L G + I Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPMAPVLSAREREVLHRIAKGQSIPAI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 176 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 215 >gi|238783876|ref|ZP_04627894.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] gi|238715263|gb|EEQ07257.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] Length = 209 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + I V + +I E+++E Q Sbjct: 72 LRNEGVDARIIILTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRQAAQGEKVFSDE 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 132 VALYLSSRHEQVNPFGELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 192 NVRSRVAATIM 202 >gi|325689072|gb|EGD31080.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 199 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|297203477|ref|ZP_06920874.1| two-component system regulatory protein [Streptomyces sviceus ATCC 29083] gi|297148424|gb|EFH28981.1| two-component system regulatory protein [Streptomyces sviceus ATCC 29083] Length = 220 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 33/74 (44%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + + LT RE LA G T+EEIAE + +S T ++ A KL A + Sbjct: 142 RPPDRSTAPGLECLTRREREVTALAARGLTNEEIAEHMVISPLTAKTHISRAMTKLGARD 201 Query: 221 RIQAIAKAIRFGYI 234 R Q + A G + Sbjct: 202 RAQLVVFAYESGLV 215 >gi|291298173|ref|YP_003509451.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567393|gb|ADD40358.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ DF + LT RE + LA G +EEIAE+L +S T ++ Sbjct: 131 VARRLMRDFASRPLSPNPVDDERLTNREREVVVLAAQGLNNEEIAERLVISPTTAKTHIS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 A +KL +R Q + A G I Sbjct: 191 RAMIKLACRDRTQLVVYAYESGLI 214 >gi|163759735|ref|ZP_02166820.1| putative two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162283332|gb|EDQ33618.1| putative two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 217 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NLT RE LQL +G +++E+ L L T+ Y+ + KL NR++A A Sbjct: 150 PIDNLTRREEQILQLVANGLSNKEVGAALDLQEKTIKHYMTNILQKLHVRNRVEAALLAR 209 Query: 230 RFGY 233 G Sbjct: 210 DRGL 213 >gi|289665829|ref|ZP_06487410.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 199 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L L G ++++I L +S TV A++ + KL +R A+ A+R Sbjct: 133 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALRR 192 Query: 232 GYI 234 G + Sbjct: 193 GIL 195 >gi|227511386|ref|ZP_03941435.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523593|ref|ZP_03953642.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085337|gb|EEI20649.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089253|gb|EEI24565.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 219 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R+L++RE L GYT++EIA +L +S TV A+ S KL +R + + A+ Sbjct: 155 RSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPELVRYAVHH 214 Query: 232 GYI 234 I Sbjct: 215 HLI 217 >gi|171913297|ref|ZP_02928767.1| two-component system regulatory protein [Verrucomicrobium spinosum DSM 4136] Length = 239 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV +S L + + A G L +R +T RE L+ Sbjct: 97 LNAGAAGYVQKSSTREELLDALRRVAAGGTSLPPDLAQRLESQRIRLT--VTPREREVLE 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++ IA +G++ TV ++ KL +R QA A+AIR G I Sbjct: 155 LIASGQSNKRIAAAIGITEDTVKRHVTHILEKLGVNDRAQATAEAIRRGII 205 >gi|119714205|ref|YP_919347.1| response regulator receiver [Nocardioides sp. JS614] gi|119526114|gb|ABL79484.1| response regulator receiver [Nocardioides sp. JS614] Length = 216 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +L G ++ EI E+L +S HT ++ S KL R+QA+ A Sbjct: 150 PALTNREREVWELVARGLSNAEITERLVISEHTTKTHVASILQKLHVRGRVQAVVLAYES 209 Query: 232 GYI 234 G + Sbjct: 210 GLV 212 >gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 233 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 5/223 (2%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSA---LDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + +Q ++ +F + ++A D + + + + D L + Sbjct: 11 VDDEPGLREAVQAYLEDSHFNVDVASNANEGWDILEKNLPDLVITDVMMPQVDGYQFLQK 70 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + + + + + + L P +A L + Sbjct: 71 LREEPRFKALPVVF--LTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVNNLLERRAS 128 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + ++ + K S +LT RE S L L G Sbjct: 129 AQTANGDEKTSDIAALAGQIAEIKAMLMGKNAIAKTTSVIKIDLTPREQSVLDLVARGLM 188 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++EIA L SV V Y+ K +R + + A+ G Sbjct: 189 NKEIARDLSTSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 231 >gi|288959031|ref|YP_003449372.1| two-component response regulator [Azospirillum sp. B510] gi|288911339|dbj|BAI72828.1| two-component response regulator [Azospirillum sp. B510] Length = 244 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+R+ +L G++++EIA LG+ TV ++ + KL NR Q A R Sbjct: 178 DRLTDRQRDVFELLLAGHSNKEIARGLGVLEGTVKVHVRAIMQKLGVRNRTQVAVVAARN 237 Query: 232 G 232 G Sbjct: 238 G 238 >gi|288572830|ref|ZP_06391187.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568571|gb|EFC90128.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 215 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L S A L++RE L L G +++E+A L +S +TV+ + KLD N Sbjct: 141 LDTAVPSRASLLSDREREVLALLAKGSSTKEVASSLHISKNTVDTHRRRIMEKLDCGNIA 200 Query: 223 QAIAKAIRFGYI 234 + I AIR G I Sbjct: 201 ELIRFAIREGLI 212 >gi|330468817|ref|YP_004406560.1| response regulator receiver protein [Verrucosispora maris AB-18-032] gi|328811788|gb|AEB45960.1| response regulator receiver protein [Verrucosispora maris AB-18-032] Length = 211 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAAR 172 + L GYV+ + + V + A G L + A Sbjct: 91 SVFAALRAGARGYVLKGARRQEIVRSVRVVADGEAIFGPAIATRLMGYFAGLARNEPAFP 150 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L T+ +IA + GLS TV ++ + KL +R QAI+ A G Sbjct: 151 ELTAREREILTLIAQHLTNPQIAARFGLSTKTVRNHVSNIFAKLQVADRAQAISMAREQG 210 Query: 233 Y 233 Sbjct: 211 L 211 >gi|302519720|ref|ZP_07272062.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. SPB78] gi|302428615|gb|EFL00431.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. SPB78] Length = 140 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + ++ A + ++ K + + LTERET L L Sbjct: 29 PADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPAPGKPALRLKALTERETEVLTLVAR 88 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE L L+ TV ++ KL +R QA+ A G + Sbjct: 89 GRSNTEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 135 >gi|315505714|ref|YP_004084601.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412333|gb|ADU10450.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 221 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L LT+RE L L G ++ EIA ++ ++ TV ++G KL Sbjct: 140 FAGQLGPAPTADPRLAQLTDREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKL 199 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R+QA+ A G + Sbjct: 200 QLRDRVQAVVLAYESGLV 217 >gi|298345245|ref|YP_003717932.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|315655667|ref|ZP_07908565.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] gi|298235306|gb|ADI66438.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|315489731|gb|EFU79358.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] Length = 233 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 4/123 (3%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + V + G S Sbjct: 114 RAGARGYVTKTIATPDLVDAIVRVAGGDAAFSP----RLAGFVLDAFGAARTDMVGTDSE 169 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERE ++L G+ +EIA +L +SV TV ++ S KL NR + A Sbjct: 170 LDSLTEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVLRKLQLSNRYELSKWAQD 229 Query: 231 FGY 233 Sbjct: 230 RRI 232 >gi|260904160|ref|ZP_05912482.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brevibacterium linens BL2] Length = 207 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 7/120 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNL 174 +R G T+E ++ A V+ E +T L K ++ L Sbjct: 84 LRAGASGFLLKDATAEDMITAVRVVAEGQSLLAPSVTRRLISEYVSGPKIAKDTAVLGQL 143 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE + L G+ + E+AE L L+ TV ++ KL +R Q + A G + Sbjct: 144 TDREIDVMTLVAKGHANAEVAEHLFLAEQTVKTHVSRILSKLGLRDRTQIVVAAYESGLV 203 >gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT E +Q G ++ EIAE +G+S TV +++ + K NR + A+ G Sbjct: 147 ELTPTEAKVIQYVARGMSNREIAEVMGVSQRTVESHVSNMLSKTGLHNRTELARWALESG 206 Query: 233 Y 233 Sbjct: 207 L 207 >gi|333001333|gb|EGK20901.1| response regulator [Shigella flexneri VA-6] Length = 215 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRTGAKGNKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|297157797|gb|ADI07509.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 220 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191 + ++ + + +I + A +T+RE L L G G ++ Sbjct: 113 LAAVRVVASGDALIAPSVTRRLIKEFAARPATTPPPRAELGGITDREREVLTLVGSGLSN 172 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA++L +SV T YL KLDA +R+Q + A G + Sbjct: 173 AEIADRLCISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLV 215 >gi|291545304|emb|CBL18412.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Ruminococcus sp. SR1/5] Length = 206 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L+ A+RN++ERE ++L +GY+++EIA +L LS TV YL S KL Sbjct: 133 ELLQSSDGFDYASRNISERELDIIRLIANGYSNKEIAAELFLSEGTVRNYLSSILDKLQL 192 Query: 219 VNRIQAIAKAIRF 231 +R Q + Sbjct: 193 RDRTQVAVFYYQH 205 >gi|283786004|ref|YP_003365869.1| nitrate/nitrite response regulator protein [Citrobacter rodentium ICC168] gi|282949458|emb|CBG89071.1| nitrate/nitrite response regulator protein [Citrobacter rodentium ICC168] Length = 215 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG--------A 152 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDSASDVYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130 Query: 153 CYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V ELF ++ LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNEYLRERELFGEQDDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002] gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002] Length = 232 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 41/107 (38%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + + E I + Q + +L +LT RE S L L Sbjct: 124 TREAAIAEQQDGGGSNLEGIAQDLREIKQFLGQQNQLVTTPPPLKIDLTPREQSVLDLVA 183 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA++L SV V Y+ K +R + + A++ G Sbjct: 184 QGLMNKEIAKELETSVRNVEKYVSRLFSKTGTNSRTELVRYALKHGL 230 >gi|45658914|ref|YP_003000.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602159|gb|AAS71637.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 223 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L +G ++E I + L +S TV + + KLD + AIR G Sbjct: 161 LSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIRAGL 220 Query: 234 I 234 I Sbjct: 221 I 221 >gi|24216568|ref|NP_714049.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|24197887|gb|AAN51067.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] Length = 223 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L +G ++E I + L +S TV + + KLD + AIR G Sbjct: 161 LSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIRAGL 220 Query: 234 I 234 I Sbjct: 221 I 221 >gi|58616457|ref|YP_195586.1| hypothetical protein p2A60 [Azoarcus sp. EbN1] gi|56315919|emb|CAI10562.1| hypothetical protein p2A60 [Aromatoleum aromaticum EbN1] Length = 432 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 42/85 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + T+ + A L+ +E L+ +G++++E+A KL ++ +TV +L Sbjct: 348 NLRAAATRTEPVAPKGPLQDEAMRLSPKEGQILRRLAEGHSNKELARKLFVTENTVETHL 407 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA+A+A+ G I Sbjct: 408 RRIYGKLGIRSRTQAVARALELGLI 432 >gi|327472321|gb|EGF17752.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 199 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|326798146|ref|YP_004315965.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326548910|gb|ADZ77295.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 211 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 32/84 (38%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V E LT RE L+ +G T+ EI E L +S HTV + Sbjct: 128 YFSPEVQQSLFEAALHDPMNLPKLTRREQEVLRCIAEGKTTVEIGETLFISPHTVETHRR 187 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + K + N I A ++ I Sbjct: 188 NLMQKFEVSNAAALIRVATQYQLI 211 >gi|304390804|ref|ZP_07372756.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656419|ref|ZP_07909308.1| two component system response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304325687|gb|EFL92933.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492978|gb|EFU82580.1| two component system response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 233 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 4/123 (3%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + V + G S Sbjct: 114 RAGARGYVTKTIATPDLVDAIVRVAGGDAAFSP----RLAGFVLDAFGAARTDMVGNDSE 169 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERE ++L G+ +EIA +L +SV TV ++ S KL NR + A Sbjct: 170 LDSLTEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVLRKLQLSNRYELSKWAQD 229 Query: 231 FGY 233 Sbjct: 230 RRI 232 >gi|256784749|ref|ZP_05523180.1| two-component response regulator [Streptomyces lividans TK24] Length = 216 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 43/121 (35%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + + V L + + +++ Sbjct: 91 LHAGARGYLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRRLLEWLSESEPRPTGPPEPPDG 150 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L L +G T+ +IA +L +S TV ++ + K +R QA+ A G Sbjct: 151 LTTRETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGL 210 Query: 234 I 234 + Sbjct: 211 V 211 >gi|229819546|ref|YP_002881072.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565459|gb|ACQ79310.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 222 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 5/136 (3%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + V V ++ ++L Sbjct: 84 FDLDEYAFSGLRAGASGFLLKDTRPADLVDAIRTVASGDAVVSPRITRRMLELFGEYLPQ 143 Query: 164 FKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 R LT RE L +G ++ EIA++ +S TV ++G KL Sbjct: 144 GGDRDTSASDPRLAELTPRELEVLVAVAEGLSNLEIADRFVVSEATVKTHVGRVLAKLGL 203 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A G + Sbjct: 204 RDRVQAVVLAYETGLV 219 >gi|157144856|ref|YP_001452175.1| transcriptional regulator NarP [Citrobacter koseri ATCC BAA-895] gi|157082061|gb|ABV11739.1| hypothetical protein CKO_00584 [Citrobacter koseri ATCC BAA-895] Length = 215 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVI 157 L + I V +I EV++EA A +V Sbjct: 71 LNALRRDGVTAQIIILTVSDSASDVYALIDAGADGYLLKDSDPEVLLEAIRAGANGGKVF 130 Query: 158 TDFLE--LFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +D + L ++ A LTERE L G ++++IA L +S TV ++ Sbjct: 131 SDRVSEYLRERELFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|150391445|ref|YP_001321494.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951307|gb|ABR49835.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 201 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 43/107 (40%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY+I ++E +A ++ + G L + + LT RE ++L Sbjct: 94 SAGAEGYLIKSTEVSSMAQQLRVLFSGTSVLDADVLKRLMQPQRKGFEELTPRERDIVEL 153 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G ++ EIAE+L +S TV L KL +R Q R Sbjct: 154 VVQGLSNREIAEQLYISEGTVRNTLSIILEKLQVRDRTQLAIYYWRR 200 >gi|302533866|ref|ZP_07286208.1| two component transcriptional regulator [Streptomyces sp. C] gi|302442761|gb|EFL14577.1| two component transcriptional regulator [Streptomyces sp. C] Length = 218 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 3/125 (2%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 +G V + L + I T ++ Sbjct: 92 AALHGGASGFLLKDASPAMLVEAVRAAAAGDALVSPAITVRLLRDMAPRTPAARTARR-- 149 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A LTERE ++ G T+ EIA +L +S+ TV +L + KLDA NR++ A A Sbjct: 150 -PAEPLTERERDVVRCLARGLTNAEIAAELYVSLSTVKTHLANVQAKLDARNRVEIAAWA 208 Query: 229 IRFGY 233 G Sbjct: 209 WESGL 213 >gi|256396944|ref|YP_003118508.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363170|gb|ACU76667.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 231 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A LT RE L L G ++ EI+ +L +S+ TV ++ + KL A +R Q + +A Sbjct: 163 PALDGLTAREREVLTLVARGKSNTEISTELFVSMSTVKTHMSALLAKLGARDRAQLVIRA 222 Query: 229 IRFGYI 234 G + Sbjct: 223 YEGGLV 228 >gi|193068201|ref|ZP_03049165.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019] gi|192958480|gb|EDV88919.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019] Length = 215 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|324997340|ref|ZP_08118452.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 232 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--------AARNLTER 177 +G++ ++ + + A G L R + LT R Sbjct: 113 AGASGWLSKDADAEAIGRALRSAADGVSTVDAAVLARLVASRPAGAPVAEREPPDGLTPR 172 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L +G ++ EIA +L + TV ++ K +R QA+ A R G Sbjct: 173 EVEVLALIAEGLSNTEIARRLVVGEATVKTHVNHLFAKAGLRDRAQAVGYAYRHGL 228 >gi|261419001|ref|YP_003252683.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765817|ref|YP_004131318.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375458|gb|ACX78201.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110683|gb|ADU93175.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 200 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTE E + L L T+ EI E+L +S TV ++ S KL +R A+ KA R G Sbjct: 138 PLTEMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFRLG 197 Query: 233 YI 234 + Sbjct: 198 LL 199 >gi|219848672|ref|YP_002463105.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542931|gb|ACL24669.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 219 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 43/110 (39%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V + ++ ++ + Q+ T L + + LT RE Sbjct: 107 VDHRVLADSIRTVAGGGALIHPQITAQLLPRLSQLATPTTSLPTPSAEPSIALTPRERDI 166 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L GYT++EI E L LS+ TV +L KL +R QA A Sbjct: 167 LRLLAQGYTNQEIGEALALSIGTVKNHLSVIFAKLAVRDRTQAALWAREH 216 >gi|329767671|ref|ZP_08259190.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341] gi|328839021|gb|EGF88609.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341] Length = 199 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L+ +E L +G +++EIA +L LS T+ Y+ + KL+ NR Sbjct: 127 ELMENIFTNHNPLSNQEKIILLKIKEGLSNKEIANELFLSEGTIRNYISNILTKLNCKNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ K+ G++ Sbjct: 187 TEAVKKSTEEGWL 199 >gi|329944887|ref|ZP_08292914.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529698|gb|EGF56594.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 234 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE L L D T+++IA +L LS TV ++ + KL +R+ Sbjct: 164 SASPLPHGIPLSEREREVLTLVVDAKTNKQIATRLRLSEATVKTHVSAIIAKLGVQDRVG 223 Query: 224 AIAKAIRFGYI 234 A+ A++ + Sbjct: 224 AVVYALQHNLV 234 >gi|291300526|ref|YP_003511804.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569746|gb|ADD42711.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R+ LT+RE+ L L G ++ EIA +L +S TV ++ + K +R QA Sbjct: 152 PPRTDLPDGLTKRESEVLTLIAAGRSNAEIARQLYISEATVKTHINNLFTKAALRDRAQA 211 Query: 225 IAKAIRFGY 233 + A R G Sbjct: 212 VTYAYRHGL 220 >gi|145224163|ref|YP_001134841.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315444498|ref|YP_004077377.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] gi|145216649|gb|ABP46053.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315262801|gb|ADT99542.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] Length = 217 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--LTE 176 GY++ ++ L + V A G V+ +F + + + A LTE Sbjct: 99 AGATGYLVKSASKQELGDAVRATAQGRAVFTPGLAGLVLGEFRRIEQSSPAGADGPTLTE 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 159 RETEILRYVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQVGNRVELARYAIEHGL 215 >gi|333026466|ref|ZP_08454530.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332746318|gb|EGJ76759.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 212 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + ++ A + ++ K + + LTERET L L Sbjct: 101 PADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPAPGKPALRLKALTERETEVLTLVAR 160 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE L L+ TV ++ KL +R QA+ A G + Sbjct: 161 GRSNAEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 207 >gi|317126445|ref|YP_004100557.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590533|gb|ADU49830.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 209 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 38/75 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L ++R + L+ RE L+L +G T+ +IA L LS TV ++L A KL Sbjct: 134 ARRLDERRRTPQPTLSGRELDVLRLVAEGGTNRDIARALFLSEATVKSHLVHAFGKLGVT 193 Query: 220 NRIQAIAKAIRFGYI 234 +R A+A A G I Sbjct: 194 SRTAAVATARSRGLI 208 >gi|254250192|ref|ZP_04943512.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gi|124876693|gb|EAY66683.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] Length = 376 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + A + L Sbjct: 135 TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFARERVESLYLHEAFT--PATYRGDYV 192 Query: 67 ILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQL-SVRLEGGLLPFA 116 D +PI+W + + + + ++ + Sbjct: 193 RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDDAPSVSPAALDGFLQTMQDDGMCS 252 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 253 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 311 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 312 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 371 Query: 230 RFGYI 234 + I Sbjct: 372 KLELI 376 >gi|121585556|ref|ZP_01675352.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae 2740-80] gi|121725924|ref|ZP_01679224.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52] gi|147671981|ref|YP_001215452.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395] gi|153818114|ref|ZP_01970781.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457] gi|153820709|ref|ZP_01973376.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33] gi|227812241|ref|YP_002812251.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2] gi|229506165|ref|ZP_04395674.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX 330286] gi|229509977|ref|ZP_04399457.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33] gi|229516462|ref|ZP_04405909.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9] gi|229605704|ref|YP_002876408.1| nitrate/nitrite response regulator protein [Vibrio cholerae MJ-1236] gi|254849833|ref|ZP_05239183.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae MO10] gi|298499474|ref|ZP_07009280.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae MAK 757] gi|121550173|gb|EAX60187.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae 2740-80] gi|121631689|gb|EAX64057.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52] gi|126511382|gb|EAZ73976.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457] gi|126521752|gb|EAZ78975.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33] gi|146314364|gb|ABQ18904.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395] gi|227011383|gb|ACP07594.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2] gi|227015263|gb|ACP11472.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395] gi|229346343|gb|EEO11314.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9] gi|229352422|gb|EEO17362.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33] gi|229356516|gb|EEO21434.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX 330286] gi|229372190|gb|ACQ62612.1| nitrate/nitrite response regulator protein [Vibrio cholerae MJ-1236] gi|254845538|gb|EET23952.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae MO10] gi|297541455|gb|EFH77506.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae MAK 757] Length = 208 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 80 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 139 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199 Query: 227 KAIRF 231 + Sbjct: 200 LYLER 204 >gi|21954776|ref|NP_665760.1| ANL19 [Synechococcus elongatus PCC 7942] gi|81230363|ref|YP_398745.1| response regulator receiver domain-containing protein [Synechococcus elongatus PCC 7942] gi|21913198|gb|AAM81148.1|AF441790_19 ANL19 [Synechococcus elongatus PCC 7942] gi|1575686|gb|AAB38785.1| putative NarL homolog [Synechococcus elongatus PCC 7942] gi|81170335|gb|ABB58673.1| response regulator receiver domain protein (CheY-like) [Synechococcus elongatus PCC 7942] Length = 235 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 12/214 (5%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 + I + + +Y +++ + + + + D L Sbjct: 24 TVMDNISEYFGVQRWGIYLLDTNNNLASVEAK-----GVSDTFIEQYQRFGKA-VDPVLK 77 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + P + + +L R + P+ G + F Sbjct: 78 YVLENHAPAH-EELVLPEGTWKQSELYQRCCSTHDHEHIMTGPLVGQGQLIGTINFARIG 136 Query: 139 --LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEE 193 + + C EL K S + + LT RE L G T+ E Sbjct: 137 HIPAFNHLELASLGAVCTHFSARLAELRKPHSVSGQISNRLTSREIQIANLVAKGLTNAE 196 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I +L ++ ++V L KL+ R + +AK Sbjct: 197 IGAELWITHNSVKQALKRIFRKLEVSARTEMVAK 230 >gi|312131668|ref|YP_003999008.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311908214|gb|ADQ18655.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 214 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 G +V+ F E + + NLTE+E L G + + IA+ L +S+ TV +L Sbjct: 128 GIARRVLQLFREGYTPPTPKEDFNLTEQERKVLHYLVAGKSYKMIADVLFISLETVKTHL 187 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 + +KL + +A+AKA++ Sbjct: 188 RNIYLKLQVHSGTEAVAKALKHKI 211 >gi|163736433|ref|ZP_02143852.1| transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] gi|163741032|ref|ZP_02148424.1| autoinducer-binding transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161385385|gb|EDQ09762.1| autoinducer-binding transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161390303|gb|EDQ14653.1| transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] Length = 251 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 71/230 (30%), Gaps = 14/230 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + +L+EL + YT + + L N+ + Sbjct: 13 ARTLEELWLEHVEQMKAYRFDRLIYGYTRHKTKTSLGDPEDFVILSNHCAEYVQGFVNSG 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + L + W+ +QE+ + Q + + AG Sbjct: 73 LYFDAPMLQWALNNEGAGSWRMVQEQLAQQTLTPQAQKVIDFNKAMGVRAGYTVSFYSAS 132 Query: 127 HKNGYVIFTSEFLMLANEVI--------IEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + I + L+ + + + L + R LT+R+ Sbjct: 133 QRFKGAISLAAEEDLSQDDVDEIWAKDGHDIILMNNVAHLKILTMPYD--PPNRGLTKRQ 190 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LQ GDG T+++IA +GL+ TV +L A L A+ KA Sbjct: 191 REALQWVGDGKTTQDIALLMGLTPATVEKHLRLAREALAVETTAHAVLKA 240 >gi|162453707|ref|YP_001616074.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161164289|emb|CAN95594.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 242 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLA 185 G + A+ + A ++++ F+ + R+ LT RE L + Sbjct: 132 DAGPELLAQAIRAAASGDALIAPRVTARLLSSFVASRPQLPRAQPGEALTAREEEVLLIV 191 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G T+ EIA++L +S+ TV A++ S KL A NR++ A G Sbjct: 192 ARGRTNAEIADELHISLSTVKAHVASLMTKLGARNRVEIAIWAYETG 238 >gi|87118413|ref|ZP_01074312.1| putative two component system response regulator [Marinomonas sp. MED121] gi|86166047|gb|EAQ67313.1| putative two component system response regulator [Marinomonas sp. MED121] Length = 226 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + LT RE L+ G+ + EIA +L + TV ++ S K Sbjct: 138 AFAELKPSHTNVTGHIDRLTTREKEILKNLALGFNNSEIASRLFIGESTVKTHVSSLLSK 197 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L+ +R QA+ A G I Sbjct: 198 LELRDRAQAVIFAYENGVI 216 >gi|116625456|ref|YP_827612.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228618|gb|ABJ87327.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 178 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + A LT RE L++ +G ++ IA KLG+S HTV ++ KL+A R Sbjct: 105 LPASPQAVAGPLTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRT 164 Query: 223 QAIAKAIRFGYI 234 +A+ IR G I Sbjct: 165 EAVTLGIRKGLI 176 >gi|302548323|ref|ZP_07300665.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465941|gb|EFL29034.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%) Query: 133 IFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + E ++ ++T + LT+RE + LA +G Sbjct: 114 LLAGLRTVASGEALLSPAATRTLITNFLMTPAPGTHLAPPQSLSELTDREREVMGLAAEG 173 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ EIAE L LS TV ++ A KL A +R Q + A + G Sbjct: 174 KSNTEIAEILVLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218 >gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 231 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 22/197 (11%) Query: 46 RRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS 105 ++ + + + D L + D P++ + + G + Sbjct: 46 QKNPPDLVISDIMMPEVDGYQFLKKLRDDPRYEAI-----PVV--------FLTARGMTT 92 Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--------- 156 R++G V E ++ +A Sbjct: 93 DRIQGYNAGCDAYLSKPFDPEELEAIVKNLLERRKATSQANTDASQLAEIAQDIREIKKK 152 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D L LT RE S L L +G ++EIA +L SV V Y+ K Sbjct: 153 LGDSESLATTPPPIKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKT 212 Query: 217 DAVNRIQAIAKAIRFGY 233 +R + + A++ G Sbjct: 213 GTNSRTELVRFALKHGL 229 >gi|114561805|ref|YP_749318.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333098|gb|ABI70480.1| two component transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 209 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157 + + + V ++ ++++E ++VI Sbjct: 69 LNAMRQEGVTARIVILTVSDAKQDVVRLLRAGADGYLLKDTEPDLLLEQLKKAMLGHRVI 128 Query: 158 TDFLEL-------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +D +E +S NLT RE LQ +G ++ IAE L +S TV ++ Sbjct: 129 SDEVEAYLYELKNTIDDNSWIENLTPRELQILQELAEGKSNRMIAEDLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|302543726|ref|ZP_07296068.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461344|gb|EFL24437.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 2/109 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLA 185 + + +LA V Q L + + LTERE L L Sbjct: 114 GEAVRVVAAGEALLAPTVTKRLIATFSQAGWTALAGAARPGQQARLDELTERENEVLVLV 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA+ L ++ TV ++ VKL +R QA A + Sbjct: 174 AQGRSNAEIAQHLVVAESTVKTHVSRILVKLGLRDRTQAAVFAYEARLV 222 >gi|194434215|ref|ZP_03066482.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012] gi|194417544|gb|EDX33646.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012] gi|320178834|gb|EFW53797.1| Nitrate/nitrite response regulator protein [Shigella boydii ATCC 9905] gi|332093180|gb|EGI98240.1| response regulator [Shigella boydii 5216-82] gi|332096195|gb|EGJ01198.1| response regulator [Shigella dysenteriae 155-74] Length = 215 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 L + I V +I EV++EA A + F Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKAF 130 Query: 161 LE-----LFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 E L ++ A LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|146308673|ref|YP_001189138.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145576874|gb|ABP86406.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 914 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A + + + + S L+ RE + LQL G +++EI+E+ Sbjct: 819 RPACPQRDALLAQLPAAREADEDVAPEE--SGPTEKLSGREMAVLQLIARGCSNQEISER 876 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S+HTV + KL R QA+A+A G + Sbjct: 877 LFISLHTVKTHARHINSKLGVERRTQAVARAKGLGLL 913 >gi|114765358|ref|ZP_01444475.1| autoinducer-binding transcriptional regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542338|gb|EAU45367.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 255 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 12/229 (5%) Query: 11 SSSLQELSP-RLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNIL 68 + S++EL L + L N+ D+ Sbjct: 17 AGSVEELWAMHLESMA-GFGFDRLMYGFTRYRTSTSLGDPNDFVLLTNHSASYTDVFVGQ 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR-- 123 + + W+ + + + + + + + AG + R Sbjct: 76 GLYHHAPMVRWALEHEGACSWRVLGEMLAQGNLTEAERRVIAFNLSMDVRAGYSVSFRSL 135 Query: 124 -LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERET 179 + + + + G ++ + L L ++LT+R+ Sbjct: 136 STRAKGAIALTARPGMQQHEVDAVWDRFGEDIMLLNNLLHLKILTLPYIPPNQSLTKRQR 195 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ GDG T ++IA +GL+ T+ +L A L+ QA+AKA Sbjct: 196 EALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKA 244 >gi|33151542|ref|NP_872895.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi 35000HP] gi|33147762|gb|AAP95284.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi 35000HP] Length = 213 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I L + + LT+RE LQ G ++++IA +L +S TV ++ + KL Sbjct: 132 IRAHLLNRRPENDPLSVLTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 192 NVHSRVAATIL 202 >gi|37522644|ref|NP_926021.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35213645|dbj|BAC91016.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 232 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 37/62 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE LQL G ++++IA+ L LSV+TV ++ KL A NR QA+ KA+ Sbjct: 169 AVALSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKAMG 228 Query: 231 FG 232 G Sbjct: 229 TG 230 >gi|328883924|emb|CCA57163.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 222 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 5/136 (3%) Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + AG + F V+ + G S ++A + A + Sbjct: 84 FDLDEYAYDGLRAGASGFLVKDAQPEELLAGIRAVASGDAVVAPSLTRRLLDAYIHHLPQ 143 Query: 160 FLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LTERE L + G G+T+ EIAE+L L+ TV ++G K A Sbjct: 144 SPTADPDPEDPRLATLTEREREILTVIGQGWTNTEIAERLHLAESTVKTHVGRILAKTGA 203 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 204 RDRVQAVILAYDTQLV 219 >gi|296877409|ref|ZP_06901446.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296431570|gb|EFH17380.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 199 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 44/91 (48%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +++ H EL + + L+ +E + L+ G +++EIA++L LS Sbjct: 109 DLMATLHAVLAGQKEYSPELMEGILTHPNPLSPQEKAVLKEVAKGASNQEIADRLFLSNG 168 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 169 TIRNYMSAILTKLDAENRTEAAKIAQEKGWL 199 >gi|302526068|ref|ZP_07278410.1| two component system DNA binding response regulator [Streptomyces sp. AA4] gi|302434963|gb|EFL06779.1| two component system DNA binding response regulator [Streptomyces sp. AA4] Length = 205 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + A L+ RE L L Sbjct: 95 AGATGYLLKDAPPEDLAAAVRNAAAGQTVLAPAVAHRLMNRMRTPAAALSPREIEVLGLV 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ EI+++L LS TV ++L KL +R A+A G I Sbjct: 155 ADGLSNLEISKRLFLSQATVKSHLVHIYAKLGVDSRTAAVAAGKARGLI 203 >gi|254285696|ref|ZP_04960659.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226] gi|150424193|gb|EDN16131.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226] Length = 208 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 80 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 139 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 MSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199 Query: 227 KAIRF 231 + Sbjct: 200 LYLER 204 >gi|163846970|ref|YP_001635014.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524791|ref|YP_002569262.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668259|gb|ABY34625.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448670|gb|ACM52936.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 218 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 42/110 (38%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V + ++ ++I + + + S LT RE Sbjct: 107 VDHRVLADSIRTVAGGGALIHPQIIAQLLPRLASLAPTPVTASSSPSDVTSILTPRERDI 166 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L GYT++EI E+L LSV TV +L KL +R QA A Sbjct: 167 LRLLAQGYTNQEIGEQLALSVGTVKNHLSVIFAKLAVRDRTQAALWAREH 216 >gi|329935654|ref|ZP_08285461.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304915|gb|EGG48786.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAG 186 + + ++ + + ++ + R A+ L T+RET L L Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFAKSRPGGRGGPAQRLKGLTQRETEVLTLVA 172 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE L L+ TV ++ KL +R QA+ A G + Sbjct: 173 RGLSNSEIAETLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 220 >gi|292670350|ref|ZP_06603776.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] gi|292648081|gb|EFF66053.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] Length = 223 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Query: 146 IIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + E V D + K+ S LT RE L G+++++I + LGLS Sbjct: 130 LAERLFGSTAVYGDVSRMAKEIWDESRGERLTPREMDVLGCIAKGFSNQDIGKALGLSEK 189 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L S KL +R QA+ ++ + Sbjct: 190 TVKNHLTSIFHKLKVNDRTQALVYVLKNKIV 220 >gi|300779182|ref|ZP_07089040.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300504692|gb|EFK35832.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 212 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE LQL G TS IAE+L LS TV+ + + K A N + I +A+ Sbjct: 146 PVARLTKREKQILQLVAQGKTSNMIAEELFLSPLTVDTHRKNLLQKFHAKNSTELINRAM 205 Query: 230 RFGYI 234 + G I Sbjct: 206 QQGMI 210 >gi|119025388|ref|YP_909233.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764972|dbj|BAF39151.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 226 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 164 DRLSNREQEVMRLIARGYTYKEVASELFISIKTVETHMSSVLRKLQLSNRSELTRWAADR 223 Query: 232 GYI 234 + Sbjct: 224 RIV 226 >gi|114320822|ref|YP_742505.1| two component LuxR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114227216|gb|ABI57015.1| two component transcriptional regulator, LuxR family [Alkalilimnicola ehrlichii MLHE-1] Length = 221 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT RE L +++ IA +LG+S TV ++ S KL +R++ Sbjct: 146 ASRPPDPFAALTPREREILMHVARAESNKVIARELGVSDGTVKLHIKSILRKLGVKSRVE 205 Query: 224 AIAKAIRFGY 233 A KA+ G Sbjct: 206 AAVKAVDLGL 215 >gi|329939256|ref|ZP_08288592.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301485|gb|EGG45379.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 238 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 9/122 (7%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVII---------EAHGACYQVITDFLELFKKRSSAAR 172 +R G +E L A I + + E S+ Sbjct: 111 LRAGAGGFVGKGIGAEELAEAVRTIAGGETLLSPAATRSLVARFLATPDESTPHDSARLA 170 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A R G Sbjct: 171 VLTPREREMVSLVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTG 230 Query: 233 YI 234 + Sbjct: 231 LV 232 >gi|126659693|ref|ZP_01730822.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126619038|gb|EAZ89778.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 90 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE + L G T+ EIA+KL +S TV+ ++ + K NR++ + A+++G Sbjct: 11 SLSGREMQIVDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|325697545|gb|EGD39431.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|328944949|gb|EGG39107.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 199 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|319791965|ref|YP_004153605.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594428|gb|ADU35494.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 237 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L + S+ A L+ RE L+L G+++ +IAE + LSV+T+ + S KL Sbjct: 162 RTVPLAEPPSAPA-RLSPRELKVLRLIAQGWSNRQIAEAVYLSVNTIEFHAKSIYRKLAV 220 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA+ +A++ G + Sbjct: 221 KSRTQAVHEAMQHGLL 236 >gi|241764600|ref|ZP_04762616.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241365963|gb|EER60589.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 263 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +++ A L+ RE L++ GYTS EI +L +S TVN ++ + KL R QA Sbjct: 194 RRQPDDADRLSAREKEILRMVASGYTSTEIGSRLLISCMTVNTHIRNIYRKLQVRTRAQA 253 Query: 225 IAKAIRFGY 233 + A G Sbjct: 254 VRFASLRGL 262 >gi|91223978|ref|ZP_01259241.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus 12G01] gi|91190889|gb|EAS77155.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus 12G01] Length = 210 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 11/138 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156 L + V ++ + + ++E +Q Sbjct: 68 LQALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAY 127 Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ +L ++ LT+RE+ L+ G+ +++IA++L +S TV ++ S Sbjct: 128 SQEVSKYLSERSEQEDVFDTLTDRESQILREVARGFRNKQIADRLFISESTVKVHMKSLL 187 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL +R A + Sbjct: 188 KKLQVPSRTAATVLYLER 205 >gi|326624070|gb|EGE30415.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 198 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 54 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 113 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 114 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 173 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 174 NLLRKLNVRSRVAATIL 190 >gi|296314242|ref|ZP_06864183.1| nitrate/nitrite response regulator protein NarL [Neisseria polysaccharea ATCC 43768] gi|296839039|gb|EFH22977.1| nitrate/nitrite response regulator protein NarL [Neisseria polysaccharea ATCC 43768] Length = 218 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + V + + + A +LT RE L G++++ IA Sbjct: 117 RKAADGDNVFSPEMTAKLVRSLISPQPAQGTQALSSLTPREMEILGYLAAGHSNKIIARH 176 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L+ TV ++ + KL+ +R+QA AI Sbjct: 177 LNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHH 210 >gi|289678344|ref|ZP_06499234.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] Length = 213 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELF 164 LL + P G + E +E ++ ++ Sbjct: 83 DEARALLLR---SLPAASGGALIPFKALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACC 139 Query: 165 KKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A L+ RE LQL G +++EI+E+L +S+HTV + KL R Sbjct: 140 TPSPEPAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERR 199 Query: 222 IQAIAKAIRFGYI 234 QA+A+A G + Sbjct: 200 TQAVARAKTLGLL 212 >gi|229526813|ref|ZP_04416217.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv. albensis VL426] gi|229336971|gb|EEO01989.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv. albensis VL426] Length = 207 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 80 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 139 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199 Query: 227 KAIRF 231 + Sbjct: 200 LYLER 204 >gi|2564978|gb|AAB82054.1| hypothetical protein [Rhodobacter capsulatus] Length = 250 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 10/211 (4%) Query: 28 IKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86 +T SA L N+D + + + Sbjct: 28 FGFDRLIYGFTRFSATQNLGSLDDTLILSNHDPAYLNSFLGAGLFSEAPMVKWAIDSVGA 87 Query: 87 IIWQSIQEETVIES---SGQLSVRLEGGLLPFAGIAFPVRL---GFHKNGYVIFTSEFLM 140 W+ + E + + L AG + + Sbjct: 88 CSWRMVAERMAAGELTEGERKVIELNRRFQVLAGYSIGFPDTSARAKGAIGLCAQPGLTQ 147 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEK 197 + I + HG +V+ + L R LT R+ L+ GDG TS +IA+ Sbjct: 148 ADVDAIWDEHGRDLRVLNSIMHLKISALPFSTTRRPLTARQREVLEWVGDGKTSADIAQI 207 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LGL+ TV +L A L+ QA+ KA Sbjct: 208 LGLTTATVEKHLRLAREALEVETTAQALLKA 238 >gi|41406787|ref|NP_959623.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|254773764|ref|ZP_05215280.1| NarL_1 [Mycobacterium avium subsp. avium ATCC 25291] gi|41395137|gb|AAS03006.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 217 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + L + G+V+ S Sbjct: 57 DVALLDYRMPGMDGAQVAAAVRADGLATRVLLISAHDESAIVYQALQQGAAGFVLKDSTR 116 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ L+ RE L G + I Sbjct: 117 SEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPTGPVLSAREREVLHRIARGQSIPAI 176 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 177 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 216 >gi|15806567|ref|NP_295281.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6459320|gb|AAF11120.1|AE001999_4 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 225 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Query: 140 MLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 +++ + +A A + L + +LT +ET+ LQL G +++ Sbjct: 117 DASSDTLADAIHAAARGEVRLHPEAARRLVRDFRSPEMRESLTPKETAVLQLLARGQSNK 176 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +IA + G+S TV ++ KL +R QA A+++G Sbjct: 177 DIAAEQGVSEATVKTHVSRLLSKLGLDSRTQAALYALKYGI 217 >gi|74312714|ref|YP_311133.1| transcriptional regulator NarP [Shigella sonnei Ss046] gi|82776204|ref|YP_402553.1| transcriptional regulator NarP [Shigella dysenteriae Sd197] gi|157156289|ref|YP_001463544.1| transcriptional regulator NarP [Escherichia coli E24377A] gi|157161674|ref|YP_001458992.1| transcriptional regulator NarP [Escherichia coli HS] gi|170019493|ref|YP_001724447.1| transcriptional regulator NarP [Escherichia coli ATCC 8739] gi|170679777|ref|YP_001744386.1| transcriptional regulator NarP [Escherichia coli SMS-3-5] gi|187730582|ref|YP_001879462.1| transcriptional regulator NarP [Shigella boydii CDC 3083-94] gi|188495436|ref|ZP_03002706.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638] gi|191165388|ref|ZP_03027230.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A] gi|193062271|ref|ZP_03043366.1| nitrate/nitrite response regulator NarP [Escherichia coli E22] gi|194427123|ref|ZP_03059674.1| nitrate/nitrite response regulator NarP [Escherichia coli B171] gi|194436209|ref|ZP_03068311.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1] gi|209919652|ref|YP_002293736.1| transcriptional regulator NarP [Escherichia coli SE11] gi|218554761|ref|YP_002387674.1| transcriptional regulator NarP [Escherichia coli IAI1] gi|218695805|ref|YP_002403472.1| transcriptional regulator NarP [Escherichia coli 55989] gi|218700662|ref|YP_002408291.1| transcriptional regulator NarP [Escherichia coli IAI39] gi|218705722|ref|YP_002413241.1| transcriptional regulator NarP [Escherichia coli UMN026] gi|253772883|ref|YP_003035714.1| transcriptional regulator NarP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162205|ref|YP_003045313.1| transcriptional regulator NarP [Escherichia coli B str. REL606] gi|256017639|ref|ZP_05431504.1| transcriptional regulator NarP [Shigella sp. D9] gi|256022125|ref|ZP_05435990.1| transcriptional regulator NarP [Escherichia sp. 4_1_40B] gi|260844795|ref|YP_003222573.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O103:H2 str. 12009] gi|260856180|ref|YP_003230071.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O26:H11 str. 11368] gi|260868909|ref|YP_003235311.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O111:H- str. 11128] gi|297520422|ref|ZP_06938808.1| transcriptional regulator NarP [Escherichia coli OP50] gi|301024278|ref|ZP_07187969.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 196-1] gi|307138849|ref|ZP_07498205.1| transcriptional regulator NarP [Escherichia coli H736] gi|307311230|ref|ZP_07590874.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|309786632|ref|ZP_07681253.1| response regulator [Shigella dysenteriae 1617] gi|312973555|ref|ZP_07787727.1| response regulator [Escherichia coli 1827-70] gi|331663697|ref|ZP_08364607.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA143] gi|331668898|ref|ZP_08369746.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA271] gi|331683869|ref|ZP_08384465.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H299] gi|73856191|gb|AAZ88898.1| nitrate/nitrite response regulator [Shigella sonnei Ss046] gi|81240352|gb|ABB61062.1| nitrate/nitrite response regulator [Shigella dysenteriae Sd197] gi|157067354|gb|ABV06609.1| nitrate/nitrite response regulator NarP [Escherichia coli HS] gi|157078319|gb|ABV18027.1| nitrate/nitrite response regulator NarP [Escherichia coli E24377A] gi|169754421|gb|ACA77120.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|170517495|gb|ACB15673.1| nitrate/nitrite response regulator NarP [Escherichia coli SMS-3-5] gi|187427574|gb|ACD06848.1| nitrate/nitrite response regulator NarP [Shigella boydii CDC 3083-94] gi|188490635|gb|EDU65738.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638] gi|190904551|gb|EDV64258.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A] gi|192931937|gb|EDV84536.1| nitrate/nitrite response regulator NarP [Escherichia coli E22] gi|194414744|gb|EDX31015.1| nitrate/nitrite response regulator NarP [Escherichia coli B171] gi|194424937|gb|EDX40922.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1] gi|209912911|dbj|BAG77985.1| nitrate/nitrite response regulator [Escherichia coli SE11] gi|218352537|emb|CAU98316.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli 55989] gi|218361529|emb|CAQ99120.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli IAI1] gi|218370648|emb|CAR18457.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli IAI39] gi|218432819|emb|CAR13713.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli UMN026] gi|242377829|emb|CAQ32596.1| narP [Escherichia coli BL21(DE3)] gi|253323927|gb|ACT28529.1| two component transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974106|gb|ACT39777.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli B str. REL606] gi|253978273|gb|ACT43943.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli BL21(DE3)] gi|257754829|dbj|BAI26331.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O26:H11 str. 11368] gi|257759942|dbj|BAI31439.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O103:H2 str. 12009] gi|257765265|dbj|BAI36760.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O111:H- str. 11128] gi|284922185|emb|CBG35267.1| nitrate/nitrite response regulator protein [Escherichia coli 042] gi|299880482|gb|EFI88693.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 196-1] gi|306908736|gb|EFN39233.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|308925541|gb|EFP71027.1| response regulator [Shigella dysenteriae 1617] gi|309702505|emb|CBJ01831.1| nitrate/nitrite response regulator protein [Escherichia coli ETEC H10407] gi|310332150|gb|EFP99385.1| response regulator [Escherichia coli 1827-70] gi|315061500|gb|ADT75827.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli W] gi|315615453|gb|EFU96085.1| response regulator [Escherichia coli 3431] gi|320177206|gb|EFW52214.1| Nitrate/nitrite response regulator protein [Shigella dysenteriae CDC 74-1112] gi|320199790|gb|EFW74379.1| Nitrate/nitrite response regulator protein [Escherichia coli EC4100B] gi|323152251|gb|EFZ38541.1| response regulator [Escherichia coli EPECa14] gi|323161744|gb|EFZ47626.1| response regulator [Escherichia coli E128010] gi|323168652|gb|EFZ54332.1| response regulator [Shigella sonnei 53G] gi|323171865|gb|EFZ57509.1| response regulator [Escherichia coli LT-68] gi|323184184|gb|EFZ69561.1| response regulator [Escherichia coli 1357] gi|323377920|gb|ADX50188.1| two component transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323936807|gb|EGB33092.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323940739|gb|EGB36927.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323945009|gb|EGB41074.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323961585|gb|EGB57192.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323972986|gb|EGB68182.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323977610|gb|EGB72696.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324117918|gb|EGC11817.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|331059496|gb|EGI31473.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA143] gi|331064092|gb|EGI36003.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA271] gi|331078821|gb|EGI50023.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H299] gi|332343973|gb|AEE57307.1| response regulator protein [Escherichia coli UMNK88] Length = 215 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|326331408|ref|ZP_08197698.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950664|gb|EGD42714.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 33/72 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LTERE + G ++ EIA +L +S TV ++ A VKL A +R Sbjct: 149 RRAANPHPRLGDLTEREREMVAWVATGRSNAEIAAELVVSPDTVRTHVSRAMVKLHARDR 208 Query: 222 IQAIAKAIRFGY 233 Q + AI G Sbjct: 209 AQLVVFAIESGL 220 >gi|297154023|gb|ADI03735.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---- 173 +A +R G +E L+ A I + T L + Sbjct: 89 VAQALRAGAGGFIGKGIGAEDLLDAVRTIADGDTLLSPAATRSLVARFLATPDDTPSHHP 148 Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A Sbjct: 149 EQLAVLTPREREMVALVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIA 208 Query: 229 IRFGY 233 R G Sbjct: 209 YRTGL 213 >gi|296454799|ref|YP_003661943.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184231|gb|ADH01113.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 185 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 123 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 182 Query: 232 GYI 234 + Sbjct: 183 RIV 185 >gi|296138380|ref|YP_003645623.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026514|gb|ADG77284.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 212 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + + A +++ A A + R LTERE A +G ++ Sbjct: 110 FVLAAIRDVAAGNMVVAASAARHLFAHPRPSTAPHRPVEFGRLTEREQQIFVRAAEGLSN 169 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIAEK L+ TV ++ KL +R+Q + A R G + Sbjct: 170 AEIAEKEFLAETTVKTHVSRVLTKLGLRDRVQLVVYAHRHGLV 212 >gi|264679733|ref|YP_003279642.1| LuxR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210248|gb|ACY34346.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni CNB-2] Length = 274 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LTERE L+L G +S E+A L +S TV+ ++ + K+ R QA+ AI Sbjct: 212 ESLTEREVEILKLIAQGKSSLEVASYLQISPLTVSTHIKNIYGKMQVRTRAQAVRCAILI 271 Query: 232 GYI 234 G I Sbjct: 272 GII 274 >gi|116073608|ref|ZP_01470870.1| possible DNA-binding response regulator [Synechococcus sp. RS9916] gi|116068913|gb|EAU74665.1| possible DNA-binding response regulator [Synechococcus sp. RS9916] Length = 244 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 7/128 (5%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE--AHGACYQV-----ITDFLELFKK 166 I + G + +LA ++ H L + Sbjct: 106 LVRIILQAIDAGCDGICAAELSGSGSVLAALDAMDSDGHYIDRIASGVLSHGQLLGSGGQ 165 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S L+ RE L+ G T+++IA+ +S TV +++ S KL +R QA+ Sbjct: 166 QSPLLAPLSLREEDVLRGLCKGMTNQQIADAFTVSTETVKSHVSSVLRKLAVTDRTQAVV 225 Query: 227 KAIRFGYI 234 KA R G + Sbjct: 226 KAFREGLV 233 >gi|86606978|ref|YP_475741.1| LuxR family transcriptional regulator [Synechococcus sp. JA-3-3Ab] gi|86555520|gb|ABD00478.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 87 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE L+L G T+++IAE+L +S TV+ ++ + K NR+ + A++ Sbjct: 8 ADLLSERELQVLELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTSNRVALVRWALQ 67 Query: 231 FGYIC 235 +G +C Sbjct: 68 WGKVC 72 >gi|330821298|ref|YP_004350160.1| PAS/PAC domain protein [Burkholderia gladioli BSR3] gi|327373293|gb|AEA64648.1| PAS/PAC domain protein [Burkholderia gladioli BSR3] Length = 541 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 16/159 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLL-----PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 + + R+ + + ++ SE E+I Sbjct: 342 VDAIGREGAVRMRDARVLRHDGEPRDCLVSADMVAIHGQDCLLLALLDISERKRTEMELI 401 Query: 147 I-------EAHGACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIA 195 +A +I + + ++ A +LT RE L G +EIA Sbjct: 402 QAIETAMQDASWFSRTLIEKLANVRRDKAPDAGAQLADLTARERDVFDLLCHGLPDKEIA 461 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LGL+ +TV ++ + KLD +R +AI A G + Sbjct: 462 NRLGLAPNTVRNHVSTIYNKLDVHSRGEAIVWARERGIV 500 >gi|311899662|dbj|BAJ32070.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 228 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G G ++ EIA L L TV ++ KL NR+ A+ A Sbjct: 155 DRLTPREHQVLRLLGRGRSNPEIAAALYLGEATVKTHVRRVLDKLGVRNRVHAVVFAFDH 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|303239313|ref|ZP_07325841.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593099|gb|EFL62819.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 210 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H + + L + ++ LT RE +L + +++EIA KL ++ TV + Sbjct: 126 LHNNIAAKLVNRLSESQDSANQLEELTSREHEIAKLVAEALSNKEIAAKLFITEGTVKNH 185 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + + KLD +R + I Sbjct: 186 ITNILSKLDLNHRTKIALYVIENNL 210 >gi|301057012|gb|ADK54837.1| two component regulator [uncultured soil bacterium] Length = 223 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183 ++A + A ++I +F + + + LTERET L Sbjct: 108 DASAAELAQAVRVVAAGDALLAPNITKRLIAEFSRVTVAPRAPVKGRIGELTERETEVLS 167 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA +L ++ T ++ +KL +R QA A G + Sbjct: 168 LIAQGLSNAEIATRLVVAEQTTKTHVSRILIKLGLRDRTQAAVFAYETGLV 218 >gi|153011325|ref|YP_001372539.1| response regulator receiver protein [Ochrobactrum anthropi ATCC 49188] gi|151563213|gb|ABS16710.1| response regulator receiver protein [Ochrobactrum anthropi ATCC 49188] Length = 263 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 18/235 (7%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNF----ALYTINSALD-------FPRRQQLICELHN 56 ++ S E + +F + N + + N Sbjct: 2 PRQILSTDERISAALSVAESRNYDDFTIACDYFAANVLRVRSLGIYLLENNRPRLFHSIN 61 Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 D + I + + L L Sbjct: 62 TPTGFLLEY-QNGLADSDPMIAAVVQNAGAIAGSRLPQNAAGNVP--LMRTLLYRWNYND 118 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAAR-- 172 + PV +G + + + E + + + + E ++ A Sbjct: 119 NLCCPVYVGDNIQALIYAAGFEMHATQLEEQVSLLCRSSALALRNIQEARPAKTPNANLT 178 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L+ R ++ +L G T+++IA L LS HTV Y+ + NR + Sbjct: 179 SLSPRLSTVARLLAAGNTNKQIARHLELSPHTVKDYVDDLIKRFGVRNRTEVAVL 233 >gi|302530267|ref|ZP_07282609.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439162|gb|EFL10978.1| two-component system response regulator [Streptomyces sp. AA4] Length = 217 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +++ +L + LTERE L L G ++ EIA L + TV ++G Sbjct: 132 RLLDRYLSAHRTPLDEQKLETLTEREKDVLGLIARGLSNTEIAGTLFIGETTVKTHVGRL 191 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R+ A+ A G + Sbjct: 192 LNKLGLRDRVHAVVFAYESGLV 213 >gi|197285412|ref|YP_002151284.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320] gi|194682899|emb|CAR43257.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320] Length = 207 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 12/144 (8%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + SG +R + + + + + L E ++ Sbjct: 55 MDLHLQGRSGIDIIRSLRRCGLTSYVLVLSISDSRNDVYAALDAGANGYLLKECELDMLL 114 Query: 152 ACYQV-----------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + +++L + S LT+RE LQ G +++IAE L + Sbjct: 115 LSLRKAVVGRPVYSEKVWQYIQLRQNYSDPLSALTKRELDVLQEVAVGMKNKQIAENLFI 174 Query: 201 SVHTVNAYLGSATVKLDAVNRIQA 224 S TV ++ + KL +R+ A Sbjct: 175 SEETVKVHIRNILKKLQVTSRLAA 198 >gi|21224729|ref|NP_630508.1| two-component system regulatory protein [Streptomyces coelicolor A3(2)] gi|256784115|ref|ZP_05522546.1| two-component system regulatory protein [Streptomyces lividans TK24] gi|289767994|ref|ZP_06527372.1| two-component system response regulator [Streptomyces lividans TK24] gi|21902164|gb|AAM78436.1|AF425994_2 putative two-component regulator [Streptomyces coelicolor A3(2)] gi|3127843|emb|CAA18909.1| putative two-component system regulatory protein [Streptomyces coelicolor A3(2)] gi|289698193|gb|EFD65622.1| two-component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 32/75 (42%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + LT RE LA G ++EEIA + +S T ++ A KL A Sbjct: 144 ARPPDRSTAPGLDALTRREREVTALAARGLSNEEIAAHMVISPLTAKTHISRAMTKLGAR 203 Query: 220 NRIQAIAKAIRFGYI 234 +R Q + A G + Sbjct: 204 DRAQLVVFAYESGLV 218 >gi|238893551|ref|YP_002918285.1| putative regulatory protein [Klebsiella pneumoniae NTUH-K2044] gi|329998395|ref|ZP_08303094.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] gi|1709068|sp|P54794|MOAR_KLEAE RecName: Full=Monoamine regulon transcriptional regulator gi|625762|pir||A36937 monoamine regulon positive regulator MoaR - Klebsiella pneumoniae gi|506343|dbj|BAA03667.1| regulator protein [Klebsiella aerogenes] gi|58036473|dbj|BAD88601.1| transcriptional factor [Klebsiella aerogenes] gi|238545867|dbj|BAH62218.1| putative bacterial regulatory protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328538695|gb|EGF64787.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] Length = 227 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 12/220 (5%) Query: 10 KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K+S + R L I I + Y +N+ L + LHN ++ Sbjct: 6 KASRNDAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPENYILHNISDNTHQQYLE- 59 Query: 69 IETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D L HF+ + + + + + +R Sbjct: 60 NFQPLDPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERR 116 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + ++E A V + ++ LT +E + + + Sbjct: 117 IVAGISLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEEDDLPAILTAKEREIVGMVRE 175 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G +++ IA +L +S+ TV +L + K + VNR + +++ Sbjct: 176 GASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215 >gi|333002916|gb|EGK22472.1| response regulator [Shigella flexneri K-272] gi|333016922|gb|EGK36246.1| response regulator [Shigella flexneri K-227] Length = 215 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRTGAKGSKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|332366199|gb|EGJ43954.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 199 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 43/73 (58%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A DG +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAADGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQDKGWL 199 >gi|332875471|ref|ZP_08443293.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6014059] gi|323518111|gb|ADX92492.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii TCDC-AB0715] gi|332736330|gb|EGJ67335.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6014059] Length = 240 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 10/211 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L I ++A A Y +S + R+ +I ++ D + + D Sbjct: 36 ESILADIAILLRADFAASYIWDSTHNLS-REGVIWKID--PKAMKDYECVW--QFNDPIT 90 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTS 136 P + ++ + GI VR G I+ + Sbjct: 91 AQLRKRQKPTFVNEVMPLADLK-KTPYYNEFLRAYGLYHGINIYFVRNGMDIGDLRIWRA 149 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + E T L L S LT RE ++L G + +++A Sbjct: 150 KDADTFGEREKRILNLLEPYFTQALPLD---LSTQYGLTSREQEVVRLVSKGLSDKDVAN 206 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L +S T+ +L ++ K+ N + Sbjct: 207 LLDISFTTLRTHLNNSMRKIGCNNLTEMALL 237 >gi|261378734|ref|ZP_05983307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea ATCC 14685] gi|269144889|gb|EEZ71307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea ATCC 14685] Length = 218 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + V + + + +LT RE L G++++ IA Sbjct: 117 RKAADGDNVFSPEMTAKLVRSLISPQPAQGTQTLSSLTPREMEILGYLAAGHSNKIIARH 176 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L+ TV ++ + KL+ +R+QA AI Sbjct: 177 LNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHH 210 >gi|184158171|ref|YP_001846510.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] gi|183209765|gb|ACC57163.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] Length = 239 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 10/211 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L I ++A A Y +S + R+ +I ++ D + + D Sbjct: 35 ESILADIAILLRADFAASYIWDSTHNLS-REGVIWKID--PKAMKDYECVW--QFNDPIT 89 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTS 136 P + ++ + GI VR G I+ + Sbjct: 90 AQLRKRQKPTFVNEVMPLADLK-KTPYYNEFLRAYGLYHGINIYFVRNGMDIGDLRIWRA 148 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + E T L L S LT RE ++L G + +++A Sbjct: 149 KDADTFGEREKRILNLLEPYFTQALPLD---LSTQYGLTSREQEVVRLVSKGLSDKDVAN 205 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L +S T+ +L ++ K+ N + Sbjct: 206 LLDISFTTLRTHLNNSMRKIGCNNLTEMALL 236 >gi|172039633|ref|YP_001806134.1| LuxR family transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171701087|gb|ACB54068.1| transcriptional Regulator, LuxR family [Cyanothece sp. ATCC 51142] Length = 90 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L L G T+ EIA+KL +S TV+ ++ + K NR++ + A+++G Sbjct: 11 SLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|332359210|gb|EGJ37031.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332359828|gb|EGJ37642.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 199 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|159184353|ref|NP_353554.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139669|gb|AAK86339.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 226 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 14/214 (6%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L L+ A ++ L + ++ D I + + Sbjct: 27 LDLLVTYAGASHYLLARDDL---LEETGLKFIVTSDWPFDLVRRLGIELTNSQN------ 77 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 S+ + ++ +SV G ++ ++F V G + ++ E + Sbjct: 78 -RSSEMEKCLSLLQPRLLLLPDDVSVPY-GIDRQYSALSFCV--GRIRLSLLLLFPEEAV 133 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + E + E ++ + K LTERE CL +G TS+EIA LG+ Sbjct: 134 PSPERLREIALLTGYCVSFGIASEAKTVRDID-LTERELECLFWIAEGKTSDEIAMILGI 192 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S +T+N Y+ S K R +AIA A+R + Sbjct: 193 SRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 226 >gi|83643206|ref|YP_431641.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631249|gb|ABC27216.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 207 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLA 185 GYV +S ++A+ + + G Y + LT R+ L L Sbjct: 99 GALGYVPKSSSNAVIASAIQLMLSGGVYIPHELLRTGHDEGMPTGDICLTPRQHEVLGLL 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++++I KL ++ T+ A++ + +L+A NR QA+ +A + Sbjct: 159 AEGMSNKQIGTKLSIAPGTIKAHIAAIFRELNAANRTQAVHRARELKLL 207 >gi|23466193|ref|NP_696796.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23326934|gb|AAN25432.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 231 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228 Query: 232 GYI 234 + Sbjct: 229 RIV 231 >gi|171316398|ref|ZP_02905617.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098431|gb|EDT43234.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 515 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200 + +A +I + + + A LT RE L G +EIA +LGL Sbjct: 398 AMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGL 457 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +TV ++ + KLD +R +AI A G + Sbjct: 458 APNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|301385893|ref|ZP_07234311.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato Max13] gi|302061837|ref|ZP_07253378.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato K40] gi|302130857|ref|ZP_07256847.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 149 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 13/155 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 ++W + L G G V + + + + Sbjct: 1 MLWSEDTFKD-----HTLLYGEMKKFNLNYGWLQSSWYNSAAKGVVTLSRSTEAITLKEL 55 Query: 147 IE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + +++ + L + L+ RE L+ DG T E I + LG Sbjct: 56 DAKEAKMSKLVRLTHACLSEIITLSPPYNP-LEKLSTREVEVLKWVADGKTGEVIGKVLG 114 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV + + KL+A N+ A KA G I Sbjct: 115 VTERTVTHHTVNIMQKLNATNKTAAAVKAALLGII 149 >gi|282860391|ref|ZP_06269457.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564127|gb|EFB69663.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 5/136 (3%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-- 161 + AG + + + V L Sbjct: 84 FDLDEYAHDGLRAGASGFLVKDAMPEELLSGIRAVASGDAVVAPSLTRRLLDAYAHHLPS 143 Query: 162 ---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ + +LTERE L + G G+T+ EIA +L L+ TV ++ K + Sbjct: 144 TPGARPERENPRIASLTEREREILTVIGQGWTNTEIATRLHLAESTVKTHVTRILAKTGS 203 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 204 RDRVQAVILAYDTRLV 219 >gi|213027459|ref|ZP_03341906.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 157 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 40/157 (25%), Gaps = 10/157 (6%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 F Y + P + I Y D L N + W + Sbjct: 5 FDYYALCVRHPVPFTRPKISLRTTYPQAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDV 64 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN----EVIIE 148 Q G+ V L G++ F+ L ++ EV + Sbjct: 65 LFH-----EAQAMWDAAQRFGLRRGVTQCVMLPNRALGFLSFSRSSLRCSSFTYDEVELR 119 Query: 149 AHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 + ++ L + ++RE L+ Sbjct: 120 LQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKW 156 >gi|307154613|ref|YP_003889997.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984841|gb|ADN16722.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 211 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 11/151 (7%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVIIE 148 I + I F G + + F +++ Sbjct: 61 DLRMPIMEGADAIAAIRAKFKQARIIVFSTYDGDENIYRGLRSGAKGYIFKGAEPHELLK 120 Query: 149 AHGACYQVI-----TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 A ++ +L ++ S+ L+ RE L+L G ++ EI++ L ++ Sbjct: 121 AIRTVHKGQKYIPPNIAAKLAERLGSS--PLSNRELEVLRLIAKGKSNSEISQDLSIAES 178 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + KLD +R QA+ A+ G + Sbjct: 179 TVRFHLKNIFSKLDVGDRTQALVTALNRGIV 209 >gi|158337844|ref|YP_001519020.1| LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308085|gb|ABW29702.1| transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 233 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 10/176 (5%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 L + + + + + + + P+ + ++ Sbjct: 45 LSVLEPRLQKVMDRALSLDHNPVVRYITERHAPVHESLVT----SPKVWRMICPRLDHWH 100 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF--LMLANEVIIEAHGACYQVITDFLELFKKRSSA- 170 AG P+ G V T E ++ + + C + T + + ++ Sbjct: 101 VMAG---PLVNQGQLVGAVGLTREQAKPAFDSQDLADLSAICLHLSTWVAAVKHQENAQK 157 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE +L G T+ I +L ++ ++V L KL+ +R + +A Sbjct: 158 QDCLTPRELEIAELVASGLTNAAIGRELWITENSVKQALKRMFRKLEVSSRAELVA 213 >gi|262403032|ref|ZP_06079592.1| transcriptional regulator VpsT [Vibrio sp. RC586] gi|262350531|gb|EEY99664.1| transcriptional regulator VpsT [Vibrio sp. RC586] Length = 224 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + A + I + +S LT+RE ++L G G ++ EIA+KL +S Sbjct: 127 QDEMWLARKLAQEYILHYRSGNSVVTSQMYAKLTKREQQIIKLLGSGSSNIEIADKLFVS 186 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|163800334|ref|ZP_02194235.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4] gi|159175777|gb|EDP60571.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4] Length = 210 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156 L + V ++ + + ++ + Q Sbjct: 71 LRTDGCDARIVILTVSDSPADITAIVRSGADGYLLKDTEPDELVGLLKQAHKGDKAYSQA 130 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I ++L K + + LT+RET L+ GY ++EIAE L +S TV ++ S KL Sbjct: 131 IAEYLIANKGQENVFDTLTDRETQILKEVSRGYRNKEIAEHLFISESTVKVHMKSLLKKL 190 Query: 217 DAVNRIQAIAKAIRF 231 +R A + Sbjct: 191 KMPSRTAATVLYLER 205 >gi|154688084|ref|YP_001423245.1| YocG [Bacillus amyloliquefaciens FZB42] gi|154353935|gb|ABS76014.1| YocG [Bacillus amyloliquefaciens FZB42] Length = 199 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S LTERE L+L DG ++EIA L + TV Y+ KL+ NR Sbjct: 126 ELMEDIYSEENPLTEREKEVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|332665795|ref|YP_004448583.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332334609|gb|AEE51710.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 209 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + ++ LT+RE LQL ++++IA +L +S TV+ + + KL Sbjct: 134 ARAHSDEGSNTGEPLLTKREVQILQLISKAMSNKQIASQLFISYQTVSVHRKNIMRKLGV 193 Query: 219 VNRIQAIAKAIRFGYI 234 N + A + Sbjct: 194 SNTAGLVRAAYDHCLV 209 >gi|295837969|ref|ZP_06824902.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295826775|gb|EFG65041.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 224 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 2/108 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAG 186 + +LA V +V L + A LTERET L Sbjct: 114 EAVEVVARGEALLAPSVTRRLITEFARVPETVLRGPAPPRTGGAYGELTERETEVLVHVA 173 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA KL ++ TV ++ VKL +R QA A + Sbjct: 174 CGLSNQEIAAKLYVAESTVKTHVSRILVKLGLRDRTQAAVFAYENRLV 221 >gi|260596309|ref|YP_003208880.1| putative HTH-type transcriptional regulator yhjB [Cronobacter turicensis z3032] gi|260215486|emb|CBA27616.1| Putative HTH-type transcriptional regulator yhjB [Cronobacter turicensis z3032] Length = 218 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + ++ + + + L H +V S + + A G Sbjct: 87 AQRHPALPVVLLVNQCQPALLRLFLRHHVAAFVRRDSPPEAIVQTLRAAAMGMLCFPQES 146 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L L+ER+ L+L G ++++I+ L +S TV A+L S +L+ Sbjct: 147 ISLLDSG-PGTLARLSERQREILKLLAAGESNKQISRHLNISAGTVKAHLESIFRRLNVT 205 Query: 220 NRIQAIAK 227 NR QA Sbjct: 206 NRTQAAML 213 >gi|225155028|ref|ZP_03723524.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224804198|gb|EEG22425.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 217 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 153 CYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + A +LT+RE LQL + YT+++IA KL +S TV+ + Sbjct: 128 AIAAMLRMVVANSGSRAPAGVDSLTDREREILQLVAESYTTKDIATKLDISAKTVDNHRT 187 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ + A+ G I Sbjct: 188 NLMRKLNLHDVASLTRYAVEIGLI 211 >gi|30063633|ref|NP_837804.1| transcriptional regulator NarP [Shigella flexneri 2a str. 2457T] gi|56480063|ref|NP_708089.2| transcriptional regulator NarP [Shigella flexneri 2a str. 301] gi|110806169|ref|YP_689689.1| transcriptional regulator NarP [Shigella flexneri 5 str. 8401] gi|30041886|gb|AAP17613.1| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri 2a str. 2457T] gi|56383614|gb|AAN43796.2| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri 2a str. 301] gi|110615717|gb|ABF04384.1| nitrate/nitrite response regulator [Shigella flexneri 5 str. 8401] gi|281601644|gb|ADA74628.1| Nitrate/nitrite response regulator [Shigella flexneri 2002017] gi|313651305|gb|EFS15703.1| response regulator [Shigella flexneri 2a str. 2457T] gi|332754834|gb|EGJ85199.1| response regulator [Shigella flexneri 4343-70] gi|332755237|gb|EGJ85601.1| response regulator [Shigella flexneri K-671] gi|332756240|gb|EGJ86591.1| response regulator [Shigella flexneri 2747-71] gi|332766006|gb|EGJ96216.1| response regulator [Shigella flexneri 2930-71] gi|333001907|gb|EGK21473.1| response regulator [Shigella flexneri K-218] gi|333016648|gb|EGK35977.1| response regulator [Shigella flexneri K-304] Length = 215 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRTGAKGSKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|33860714|ref|NP_892275.1| LuxR family regulatory protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633656|emb|CAE18613.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 92 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L DG T++EIA +L +S TV+ ++ + K + NR+ + A+ G Sbjct: 15 GLSSREMEIINLVADGLTNQEIAVRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 74 Query: 233 YIC 235 IC Sbjct: 75 KIC 77 >gi|332974286|gb|EGK11218.1| hypothetical protein HMPREF9374_2036 [Desmospora sp. 8437] Length = 438 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 86/235 (36%), Gaps = 25/235 (10%) Query: 11 SSSLQELS-PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 S SL++L + I + R AL+ +S + + +++Y +D ++ + Sbjct: 217 SRSLEDLLTDSVQFIVENTRHRRGALFWYSSVT------RTVEGIYSYRVDLTEVRQVRA 270 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHK 128 + PI ++ + + + +A + Sbjct: 271 LESNIPGIAWAIRETRPIY----LQDAKLFFPLHYVKQFR----LTSLLACTLYGENRQP 322 Query: 129 NGYVIFTSEFLMLAN------EVIIEAHGACYQVITDFL---ELFKKRSSAARNLTERET 179 G+++ + ++ V+ L R A++ LT RE Sbjct: 323 VGFLLLDQDGEPFDPPDSKGFRLLEVLVARVSMVLRVKLYESTPLSPRPPASKLLTRREQ 382 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ+ GY+++ I E L +S HT Y + KL+A NR +A+AK R G I Sbjct: 383 ELLQMIAYGYSTKHIGEILHISEHTAAEYAQTILRKLNAKNRPEAVAKGFRLGMI 437 >gi|326776281|ref|ZP_08235546.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656614|gb|EGE41460.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 222 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 9/116 (7%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 FP L + + +I E + + LT RE Sbjct: 109 TFPELLHAVRVVAGGHALLAPEITGRLIAEFTR---------QRVSAPPPRSVDGLTARE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ +IA++L ++ HTV ++ K+ +R QA+ A G + Sbjct: 160 VEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLV 215 >gi|282853975|ref|ZP_06263312.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282583428|gb|EFB88808.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314923372|gb|EFS87203.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314966719|gb|EFT10818.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981049|gb|EFT25143.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315093364|gb|EFT65340.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|327327545|gb|EGE69321.1| nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL103PA1] Length = 210 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMVRMRSPRTSLTAREFDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|241889344|ref|ZP_04776645.1| two-component response transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863887|gb|EER68268.1| two-component response transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 199 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ LT +E L +G ++EIA +L LS T+ Y+ + KL+ NR Sbjct: 127 ELMENIFNSHNPLTNQEKIILLKIKEGLPNKEIANELFLSEGTIRNYISNILTKLNCKNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ K+ G++ Sbjct: 187 TEAVKKSTEEGWL 199 >gi|119964473|ref|YP_946300.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119951332|gb|ABM10243.1| putative Transcriptional regulator, LuxR-family [Arthrobacter aurescens TC1] Length = 424 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 160 FLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L L + A L RE LQL G + IA LG+S +TV +L + K Sbjct: 346 VLPLDPPSTPAGDVAEWGLAARELEVLQLLAAGQRNRTIATDLGISENTVKFHLRNLFRK 405 Query: 216 LDAVNRIQAIAKAIRFGY 233 LD +R +AIA A G Sbjct: 406 LDVRSRTEAIALAHSAGL 423 >gi|71068204|gb|AAZ23059.1| probable putative response regulator [Streptomyces fradiae] Length = 227 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 3/197 (1%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 I+ + P ++ + + D + + E G ++ + Sbjct: 28 IDVVGEAPDGKRGVEVSRSVHPDVVLMDVRMPEMDGLAAARALLDPPPGVVHRPKVLMLT 87 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 +G V + L + Sbjct: 88 TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR-RLIAEFAK 144 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + LT RET L L G +++EIA +L L+ TV ++G KL Sbjct: 145 QRPATARGNPALRLNGLTPRETEVLGLIARGLSNQEIAGRLVLAEQTVKTHVGRVLAKLT 204 Query: 218 AVNRIQAIAKAIRFGYI 234 +R QA+ A G + Sbjct: 205 LRDRAQAVVFAYESGLV 221 >gi|326334144|ref|ZP_08200369.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325948061|gb|EGD40176.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 215 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 9/122 (7%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVI--------IEAHGACYQVITDFLELFKKRSSAAR 172 +R G T L+ A + + G + + Sbjct: 95 TIRGGARGYVTKTITGSELVAAIQRVSGGDAVFSPRLAGFVLDAFAGTIAIA-DIDEDLD 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE ++L GY+ +E+A +L +S+ TV ++ + KL +R + A Sbjct: 154 RLTEREREVMRLIARGYSYKEVAGELFISIKTVETHMSNVLRKLQLSSRHELTRWANDRR 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|297626956|ref|YP_003688719.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922721|emb|CBL57298.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 221 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G++ +EIAE L +S TV + + KL +R++ AIR G Sbjct: 159 LTPREEEILKLIAEGHSGKEIAEMLFISPKTVERHRANLLEKLGMKDRLELTRYAIRVGL 218 Query: 234 I 234 I Sbjct: 219 I 219 >gi|291298992|ref|YP_003510270.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568212|gb|ADD41177.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 203 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 2/195 (1%) Query: 40 SALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH-FNSGLLPIIW-QSIQEETV 97 ++ + + + + + + + + + + + Sbjct: 6 TSSPIAQECPSATDEDPWMWVATAAYRVARASSYGPCPDADLRQLQVAVRAARGVGDPAP 65 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 +++G L L G + G PV G+ + Sbjct: 66 RQNTGHLVPGLTGTVTQKNGAVIPVARGYGHTMTDQPARGYGRTLTTQPGAEPRGIGPRT 125 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + + S + LT RE L A G ++E I +L +S HT+ +L K+ Sbjct: 126 SAYYRGDQLPSINGKQLTVREYQILNCAAQGKSNEHIGRELFVSEHTIKTHLRRLFDKIG 185 Query: 218 AVNRIQAIAKAIRFG 232 A NR A+A A R G Sbjct: 186 AANRAHAVAIAFRQG 200 >gi|149914863|ref|ZP_01903392.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b] gi|149811051|gb|EDM70888.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b] Length = 252 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 10/227 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILIE 70 SS++E+ + L N+ D D+ Sbjct: 15 SSVEEVWKIHTRRMADYGFDRIMYGYTRYRTETSLGDPDDFVLLTNHHQDYADVFIGEGL 74 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFP---VRL 124 + + W + + + + + + AG + V Sbjct: 75 YFYAPMVKWALDNEGACSWSVMADRKLSGGMSEAERKVIEFNRRHGVTAGYSISFKSVTP 134 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSC 181 + + A + I +G + + + L R LT R+ Sbjct: 135 RSKGAIALTARRDLDQPAVDAIWAKYGHEILTLNNVVHLRILTLPYTTKGRTLTRRQREV 194 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L GDG T ++IA +GL+ TV +L A L+ QA+ KA Sbjct: 195 LAWVGDGKTIQDIAVLMGLTPATVEKHLRLARDSLNVETTAQAVLKA 241 >gi|108799996|ref|YP_640193.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119869121|ref|YP_939073.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108770415|gb|ABG09137.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119695210|gb|ABL92283.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 218 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRS--SAARNLTE 176 GY++ ++ L+ V A G V+ ++ + ++ +A LTE Sbjct: 100 AGATGYLVKSASKAELSAAVRATADGRAVFTPGLAGLVLGEYRRIAQRPDTGDSAPTLTE 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 160 RETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216 >gi|298250158|ref|ZP_06973962.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548162|gb|EFH82029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1003 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + + + S L++RE L L G+++ EI Sbjct: 904 STSAAQSCSLGYLNRLLSAFHGTHAPQPVQENVISLTEQLSQREQEVLHLLASGHSNAEI 963 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L + ++TV +L + KL NR QAIA+A + Sbjct: 964 AETLIIGLNTVKTHLKNIYGKLGTHNRTQAIAQARTLHLL 1003 >gi|261380927|ref|ZP_05985500.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava NJ9703] gi|284796180|gb|EFC51527.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava NJ9703] Length = 218 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA A++ Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210 >gi|326331827|ref|ZP_08198114.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] gi|325950324|gb|EGD42377.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%) Query: 151 GACYQVITDFLELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A +I+ +L++ ++ + LT RE L L G +++EIA++L +S T Sbjct: 131 AATRSLISRYLKVDRRATGGRFDARRLEELTPREREILVLVAGGLSNQEIADELVISPFT 190 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KLDA R Q + A G + Sbjct: 191 AKTHVNNMMTKLDAPGRAQLVIWAYESGLV 220 >gi|313837284|gb|EFS74998.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928042|gb|EFS91873.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314972055|gb|EFT16153.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907167|gb|EGG26933.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 217 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 ++ T + ++ +VI K NLT RE +L G ++ Sbjct: 108 LLVTGLRQVAEGHALLAPE-VTRRVIARSASRLAKLDRRVENLTSREIEVTRLVARGLSN 166 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L +S TV ++ S K D +R+Q + A G I Sbjct: 167 AEIAAELTVSEATVKTHVSSCLTKCDLRDRVQLVVLAYESGLI 209 >gi|307327124|ref|ZP_07606313.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887205|gb|EFN18202.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 216 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + ++ + + S A LT+RE +Q G T+ EIA + Sbjct: 119 RAAVRGDAMVAPQITLRLLQHFTKARRRGASEPAEPLTDREEEVIQGIARGLTNPEIAAE 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L ++ TV +LGS KL NR++ A A R G Sbjct: 179 LYIAPSTVKTHLGSVQAKLGLRNRVEVAAWAFRSG 213 >gi|289770298|ref|ZP_06529676.1| two-component system response regulator [Streptomyces lividans TK24] gi|289700497|gb|EFD67926.1| two-component system response regulator [Streptomyces lividans TK24] Length = 235 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 7/138 (5%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + + V L Sbjct: 97 FDLDEYAYSGLRAGASGFLVKDALPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPA 156 Query: 164 FKKRS-------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 R LTERET L++ G G+T+ EIAE+L L+ TV ++G K Sbjct: 157 AGTRDHTPGSPDPRLSPLTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKT 216 Query: 217 DAVNRIQAIAKAIRFGYI 234 + +R+QA+ A + Sbjct: 217 GSRDRVQAVILAYETKLV 234 >gi|229589665|ref|YP_002871784.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361531|emb|CAY48407.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 504 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 5/99 (5%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194 EV+ +A +I S N LT RE L L +G +EI Sbjct: 397 AAIEEVMQDASWFSQTLIEKLANAKSVNSPNQPNISFTDLTARERDVLGLICEGLADKEI 456 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L L+ +TV ++ + KL +R AI A G Sbjct: 457 ALRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 495 >gi|324996115|gb|EGC28026.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327460591|gb|EGF06926.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327488948|gb|EGF20745.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|332365506|gb|EGJ43266.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 199 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEQGWL 199 >gi|320160834|ref|YP_004174058.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994687|dbj|BAJ63458.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 222 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF------LELFKKRSSAARNLT 175 +R G E L+ A E + +T + ++ +SA NL+ Sbjct: 101 IRSGASGYILKQIGGEDLIRALESVGRGEALLDPAVTQRVFQEVRRAVKEEEASAFANLS 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++E L L +G T+ EIA+ L L TV Y+ S KL NR +A A A+ Sbjct: 161 QQEKHVLLLVSEGKTNREIAKALFLGEGTVRNYVSSILSKLGVSNRAEAAAYAVEHNL 218 >gi|300859427|ref|YP_003784410.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686881|gb|ADK29803.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302207104|gb|ADL11446.1| Two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis C231] gi|302331665|gb|ADL21859.1| Two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis 1002] gi|308277359|gb|ADO27258.1| Two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis I19] Length = 212 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G T L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRLMTRVRTPRTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNRDIGRVLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGVL 212 >gi|300782719|ref|YP_003763010.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792233|gb|ADJ42608.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 42/162 (25%), Gaps = 19/162 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138 + ++ R+ L +A V VI Sbjct: 65 LDVHMPDGGGAEVLRRVRPELPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSKELV 124 Query: 139 ------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 G D LT RE L+L GY + Sbjct: 125 RAVVRVSDGDAVFSPRLAGFVLDAFADRPGSAPINDPELDLLTPRERDVLRLLARGYAYK 184 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L +SV TV ++ S K NR + A + Sbjct: 185 EIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 226 >gi|221197390|ref|ZP_03570437.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221204064|ref|ZP_03577082.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221176230|gb|EEE08659.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221183944|gb|EEE16344.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 510 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLEL 163 + + + ++ S+ E+ + +A +I + Sbjct: 357 RDCVVSADSVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANV 416 Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + A LT RE L G +EIA +LGL+ +TV ++ + KLD Sbjct: 417 RRANAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVH 476 Query: 220 NRIQAIAKAIRFGYI 234 +R +AI A G + Sbjct: 477 SRGEAIVWARERGIV 491 >gi|161521689|ref|YP_001585116.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352145|ref|YP_001947772.1| transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221210733|ref|ZP_03583713.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] gi|160345739|gb|ABX18824.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189336167|dbj|BAG45236.1| transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221169689|gb|EEE02156.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] Length = 510 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLEL 163 + + + ++ S+ E+ + +A +I + Sbjct: 357 RDCVVSADSVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANV 416 Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + A LT RE L G +EIA +LGL+ +TV ++ + KLD Sbjct: 417 RRANAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVH 476 Query: 220 NRIQAIAKAIRFGYI 234 +R +AI A G + Sbjct: 477 SRGEAIVWARERGIV 491 >gi|82703694|ref|YP_413260.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411759|gb|ABB75868.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 257 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 9/140 (6%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 + S L+ L + FT L+ + + Sbjct: 116 RFSNDLKRENLQRIAAHGMFDTNGRTTCFFTFTQISAALSERHAYFLELLMPHMHMALVR 175 Query: 163 L-----FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + K+ + +T+RET L+ G ++ EIA+ L +S TV ++ Sbjct: 176 MLFHERHHKQGAVGERSRKLITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKIL 235 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KLD NR A+AKA+ Sbjct: 236 KKLDVNNRAHAVAKAMALKI 255 >gi|78063527|ref|YP_373435.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77971412|gb|ABB12791.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 514 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 17/163 (10%) Query: 89 WQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFTSEFLMLA 142 WQ I+ + V++ + ++ S+ Sbjct: 329 WQRIENRLARDGNVRNADVQIRTREGDVRDCVVSADPVAIHGRDCLLVALLDISDRKRTE 388 Query: 143 NEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTS 191 E+ + +A +I + + + A LT RE L G Sbjct: 389 MELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLAD 448 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA +LGL+ +TV ++ + KLD +R +AI A G + Sbjct: 449 KEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|319638279|ref|ZP_07993042.1| LuxR family Transcriptional regulator [Neisseria mucosa C102] gi|317400552|gb|EFV81210.1| LuxR family Transcriptional regulator [Neisseria mucosa C102] Length = 218 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA A++ Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210 >gi|16130130|ref|NP_416697.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. MG1655] gi|89109009|ref|AP_002789.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. W3110] gi|170081813|ref|YP_001731133.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. DH10B] gi|238901367|ref|YP_002927163.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli BW2952] gi|400374|sp|P31802|NARP_ECOLI RecName: Full=Nitrate/nitrite response regulator protein narP gi|304917|gb|AAA24200.1| nitrate/nitrite response regulator [Escherichia coli] gi|1788521|gb|AAC75253.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. MG1655] gi|85675300|dbj|BAE76656.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K12 substr. W3110] gi|169889648|gb|ACB03355.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. DH10B] gi|238860866|gb|ACR62864.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli BW2952] gi|260448714|gb|ACX39136.1| two component transcriptional regulator, LuxR family [Escherichia coli DH1] gi|315136825|dbj|BAJ43984.1| transcriptional regulator NarP [Escherichia coli DH1] Length = 215 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|282862235|ref|ZP_06271298.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563260|gb|EFB68799.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 230 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G+++++IAE+L +S TV ++ A KL A +R Q + A Sbjct: 163 DALTGREREVLVLVAGGHSNDQIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYES 222 Query: 232 GYI 234 G + Sbjct: 223 GLV 225 >gi|239983191|ref|ZP_04705715.1| two component LuxR family transcriptional regulator [Streptomyces albus J1074] Length = 326 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 11/209 (5%) Query: 28 IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH-FNSGLLP 86 ++A A + + L+ + D + L + + H P Sbjct: 43 LRALFAATPSFRIEGEAENGDALVELARLHAPDVVLMDAALPGPRVLEVVRHLARDQPHP 102 Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLP--FAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144 I + E + L G +G + G ++ Sbjct: 103 IGVVLLVSEQGPADTWVLEAARAGARGLLLKSGGQEAILSGVRDVAAGGIAMSTEFVSQ- 161 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + + +L ++ LT RE +L G T+++I+ +L LS T Sbjct: 162 -------ILKALHSAYLPAAERPFRDISLLTPREMQVFRLVSQGLTNQQISNRLVLSEAT 214 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V ++ KLD NR+ A+ A G Sbjct: 215 VKSHFNRICHKLDLRNRVDAVILAYETGI 243 >gi|254477132|ref|ZP_05090518.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214031375|gb|EEB72210.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 204 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 32/72 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E A L+ RE L G +++EIA +L L T+ ++ + KLDA NR Sbjct: 132 EAEAPSHPLADKLSPREIEVLDGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNR 191 Query: 222 IQAIAKAIRFGY 233 QA A G Sbjct: 192 TQAALTAKEAGL 203 >gi|262403730|ref|ZP_06080288.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586] gi|262350234|gb|EEY99369.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586] Length = 202 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ + + +L Sbjct: 74 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMRGEKAFSESVERYLLNRDD 133 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 134 ASNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 193 Query: 227 KAIRF 231 + Sbjct: 194 LYLER 198 >gi|300859475|ref|YP_003784458.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686929|gb|ADK29851.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302207158|gb|ADL11500.1| Two-component response regulator ChrA [Corynebacterium pseudotuberculosis C231] gi|302331719|gb|ADL21913.1| Two-component response regulator ChrA [Corynebacterium pseudotuberculosis 1002] gi|308277411|gb|ADO27310.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Corynebacterium pseudotuberculosis I19] Length = 199 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V+ G L ++ S + L+ RE LQ Sbjct: 91 AGAMGYLLKDAPEAALHDAVVATFEGRRTLAPEVANALMQRVSKPRQALSTREIEILQNL 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ ++A KL +S TV +L KL NR AI A + I Sbjct: 151 EQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199 >gi|297531030|ref|YP_003672305.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254282|gb|ADI27728.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 200 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+ E + L L T+ EI E+L +S TV ++ S KL +R A+ KA R G Sbjct: 138 PLTDMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFRLG 197 Query: 233 YI 234 + Sbjct: 198 LL 199 >gi|291295044|ref|YP_003506442.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470003|gb|ADD27422.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 194 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ L L + R+ LT RE LQ G +++EIA ++ +S TV +L Sbjct: 108 ALAERLRRLGLGLEPRLRAPELPRLTAREQEVLQWMAQGLSTKEIARQMHISPETVKDHL 167 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL+A NR++A+ +A G + Sbjct: 168 LRLYEKLEARNRVEALERARSLGLL 192 >gi|330469956|ref|YP_004407699.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812927|gb|AEB47099.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 218 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 151 GACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 G V+ ++ L A LTERET L+L G + ++IAE+LGLS TV Sbjct: 129 GLAGLVLGEYRRLAAAGGPEPGQDTAPRLTERETEVLRLVAKGMSYKQIAERLGLSHRTV 188 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL NR++ AI G Sbjct: 189 QNHVQNTLGKLQLHNRVELTRYAIERGL 216 >gi|257054552|ref|YP_003132384.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584424|gb|ACU95557.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 19/162 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + ++ R+ L +A V VI +++ ++ Sbjct: 68 LDVHMPDGGGAEVLRRVRPELPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSRELV 127 Query: 148 EAHGACY--------QVITDFLELFKKRS-------SAARNLTERETSCLQLAGDGYTSE 192 A ++ L+ F R LT RE L+L GY + Sbjct: 128 SAVMRVADGDAVFSPRLAGFVLDAFADRPGSEPINDPDLDLLTPRERDVLRLLARGYAYK 187 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L +S+ TV ++ S K NR + A + Sbjct: 188 EIASELFISIKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 229 >gi|227546539|ref|ZP_03976588.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212856|gb|EEI80735.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 231 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228 Query: 232 GYI 234 + Sbjct: 229 RIV 231 >gi|213693023|ref|YP_002323609.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524484|gb|ACJ53231.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459203|dbj|BAJ69824.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 231 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228 Query: 232 GYI 234 + Sbjct: 229 RIV 231 >gi|307329696|ref|ZP_07608853.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884636|gb|EFN15665.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 9/125 (7%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---- 173 +A +R G +E L+ A I + T L + A Sbjct: 93 VAQALRAGAGGFIGKGIGAEDLLAAVRTIADGDTLLSPAATRSLVARFLATPADAPPRHA 152 Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A Sbjct: 153 ERLSVLTPREREMVALVATGLSNQEIAEQMFLSPFTVRAHVQRAMTKLEARDRAQLVVIA 212 Query: 229 IRFGY 233 R G Sbjct: 213 YRTGL 217 >gi|297161600|gb|ADI11312.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 216 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 154 SLTEREREVLALIADGRSNREIARALILSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 213 Query: 233 Y 233 Sbjct: 214 I 214 >gi|228996711|ref|ZP_04156348.1| Regulatory protein to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Bacillus mycoides Rock3-17] gi|228763030|gb|EEM11940.1| Regulatory protein to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Bacillus mycoides Rock3-17] Length = 55 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EI +KL +S+ TV ++ + KL NR++AI KA+ G I Sbjct: 5 LATGATNKEIGKKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLI 54 >gi|158334970|ref|YP_001516142.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305211|gb|ABW26828.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT ET +QL G ++ EIA+ L +S TV +++ + K NR + AI Sbjct: 155 LTPTETKVIQLVAKGMSNREIADDLSVSQRTVESHVSNMLGKTGLNNRTELARWAIEQRM 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|109898606|ref|YP_661861.1| two component LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700887|gb|ABG40807.1| two component transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 215 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K ++ LT RE L G +S+EIA L +S TV A+ + KL+ + Sbjct: 142 IDKPIKDTSQKLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLA 201 Query: 223 QAIAKAIRFGYI 234 + I A+ G + Sbjct: 202 ELICYAVDHGLV 213 >gi|302873358|ref|YP_003841991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] gi|307688472|ref|ZP_07630918.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Clostridium cellulovorans 743B] gi|302576215|gb|ADL50227.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] Length = 895 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE LQ G T+ EIAEK +S++TV +L + KLD +R +A+ KA Sbjct: 833 ELLSKREIEILQSLEQGATNSEIAEKSFVSINTVKTHLLNIYTKLDVHSRTRAVVKAKEL 892 Query: 232 GYI 234 I Sbjct: 893 KLI 895 >gi|85705256|ref|ZP_01036355.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] gi|85670129|gb|EAQ24991.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] Length = 215 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + LT RE + L G +++++A+ L +SV TV + + KL + Sbjct: 136 SLEPYENPEREQLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIAST 195 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 196 AGLTRYALEHGVL 208 >gi|302524105|ref|ZP_07276447.1| two-component system response regulator [Streptomyces sp. AA4] gi|302433000|gb|EFL04816.1| two-component system response regulator [Streptomyces sp. AA4] Length = 222 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 45/162 (27%), Gaps = 19/162 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138 + ++ R+ L +A V VI Sbjct: 61 LDVHMPDGGGAEVLRRVRPELPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSKELV 120 Query: 139 ----LMLANEVII--EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + G D LT RE L+L GY + Sbjct: 121 RAVVRVADGDAVFSPRLAGFVLDAFADRPGSAPINDPELDLLTPRERDVLRLLARGYAYK 180 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L +SV TV ++ S K NR + A + Sbjct: 181 EIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 222 >gi|254776539|ref|ZP_05218055.1| response regulator receiver domain-containing protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 167 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 152 ACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 V+ ++ + + LT+RET L+ G ++++IAEKL LS TV ++ Sbjct: 80 LAGLVLGEYRRIAQSKDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHV 139 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 + KL NR++ AI G Sbjct: 140 QATFRKLQVANRVELARYAIEHGL 163 >gi|313201574|ref|YP_004040232.1| LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|26005747|dbj|BAC41336.1| transcription regulator like protein EpsA [Methylobacillus sp. 12S] gi|312440890|gb|ADQ84996.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 265 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 141 LANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + + H L ++ + A L+ RE ++ +G T++EI L Sbjct: 169 IDSALRQLEHLPVQHPADKEASEDLHEEENEALEQLSSREIEIMEWVRNGKTNQEIGMIL 228 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S TV +L KLD +NR QA++K Sbjct: 229 DISSFTVKNHLQRIFKKLDVLNRAQAVSK 257 >gi|182434678|ref|YP_001822397.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463194|dbj|BAG17714.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 232 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177 GYV+ + L GA +I +FL AR +TER Sbjct: 114 AGAAGYVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNFLDRAKDGEDLPARAITER 173 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G++S+EIAE L +SV TV + + KL +R++ AIR G I Sbjct: 174 EEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 230 >gi|56459293|ref|YP_154574.1| transcriptional regulator NarL [Idiomarina loihiensis L2TR] gi|56178303|gb|AAV81025.1| Nitrate/nitrite response regulator (CheY, HTH domain) [Idiomarina loihiensis L2TR] Length = 219 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 16/137 (11%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGAC-------YQ 155 RL + I V I + E+++E + Sbjct: 72 RLRDSGVTSRIIMLTVSDADDDVVAAITNGADGYLLKDMEPELLLEQIHRAVTGKMVLSE 131 Query: 156 VITDFLELFKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 IT+ L ++ S NLT RE L L G +++ IA +L +S TV ++ Sbjct: 132 AITEILATALRQPTQSTTSQLSNLTNREHEILSLIAKGMSNKVIARELDISDGTVKVHVK 191 Query: 211 SATVKLDAVNRIQAIAK 227 KL +R++A Sbjct: 192 HLLKKLGLRSRVEAAVW 208 >gi|72161807|ref|YP_289464.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71915539|gb|AAZ55441.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 214 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 16/139 (11%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 ++G L +E L A V G + Sbjct: 91 ALRAGAAGFLLKDVEAADLLKA-----VHTVARGEGMIAPAVTRR-----------LINE 134 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 T E K + LT RE L G+G ++++IA +L ++ T ++ Sbjct: 135 FAATRPREQEKADPAILERLTPREREVLACIGEGLSNQQIARRLYITETTAKTHVSRILT 194 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KLD +R+QA A G Sbjct: 195 KLDLRSRVQAAIVAREVGL 213 >gi|331653626|ref|ZP_08354627.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M718] gi|331048475|gb|EGI20551.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M718] Length = 225 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 81 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SERVNQYLHEREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAATIL 217 >gi|170767404|ref|ZP_02901857.1| nitrate/nitrite response regulator NarP [Escherichia albertii TW07627] gi|170123738|gb|EDS92669.1| nitrate/nitrite response regulator NarP [Escherichia albertii TW07627] Length = 215 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 14/141 (9%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ---VI 157 L + I V +I EV++EA A + V Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130 Query: 158 TDFLE--LFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ + L ++ A LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVSQYLHEREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 + KL+ +R+ A ++ Sbjct: 191 NLLRKLNVRSRVAATILFLQH 211 >gi|300933089|ref|ZP_07148345.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 212 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + LT RE L+LAG G ++ +IA++L L+ T+ +++G KL NR Sbjct: 141 LMDSMNRPMETLTAREIDVLRLAGLGRSNRQIAKELVLTEATIKSHMGRVFTKLGVSNRT 200 Query: 223 QAIAKAIRFGYI 234 A+A A G + Sbjct: 201 AAVAVARERGIL 212 >gi|221069868|ref|ZP_03545973.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220714891|gb|EED70259.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 230 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 20/177 (11%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128 P+ + S L +L + L Sbjct: 53 ARAQLAEHPVAMALVDLGLPDGSGIDLISQLRAADPGMGILVISAWSTEDAILSALRAGA 112 Query: 129 NGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLEL----FKKRSSAARNLTER 177 NGYV+ + L + + ++I + K L+ R Sbjct: 113 NGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRIIAELQPAQPTEAHKAMPPEAVLSTR 172 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L DG T+ EIAE L LS +TV ++ + KL +R +A+++A G + Sbjct: 173 ELQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 229 >gi|315225137|ref|ZP_07866954.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] gi|314944820|gb|EFS96852.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] Length = 237 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L LA G++S+EIAE+L +S +TVN + + K + + I+AI A R G Sbjct: 176 ALTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDIARRKG 235 Query: 233 YI 234 + Sbjct: 236 IL 237 >gi|300785587|ref|YP_003765878.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795101|gb|ADJ45476.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 225 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 2/120 (1%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + ++ A + +++ + S+ Sbjct: 105 LRAGALGYLTKDAGRDHIAQAIRT--AAAGQAVLDPTIHARLLAATAHHPDTPPSAPPDG 162 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L G+++ EIA +L +S T+ + K+ A +R QA+ A + Sbjct: 163 LTTRETEVLTQLAAGHSNTEIARQLFVSETTIKTRINHIYAKIGAADRAQAVRYAYQHHL 222 >gi|302869854|ref|YP_003838491.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302572713|gb|ADL48915.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 225 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 18/161 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + + +A V +I ++ E + Sbjct: 65 LDVHMPDGGGRAVLEAMRRTHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPEELT 124 Query: 148 EAHGACY--------QVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193 A ++ L+ F R LT RE L+L GY +E Sbjct: 125 GAIRRVADGDAVFSPRLAGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKE 184 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA++L +S+ TV ++ + KL NR + A + Sbjct: 185 IAKELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 225 >gi|221633789|ref|YP_002523015.1| response regulator uvrY [Thermomicrobium roseum DSM 5159] gi|221156063|gb|ACM05190.1| response regulator uvrY [Thermomicrobium roseum DSM 5159] Length = 221 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 18/155 (11%) Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEFLMLANEVIIE 148 + + R+ LP + V L +GYV +S L + + Sbjct: 62 PGNGLEALRRIASLGLPTRTLILTVHAEERYLLPVLQAGGSGYVRKSSLHTDLVEAIRLV 121 Query: 149 AH---GACYQVITDFLE--LFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 A L+ L R+ A+ L+ERE L+L GYT++EIA++L Sbjct: 122 ARGEVFIDQAAARTLLQGYLDHARTGEVQDPAQLLSEREREVLRLTAAGYTAQEIADQLF 181 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV Y KL R + + A+R G + Sbjct: 182 LSPKTVETYRHRVMQKLGFSRRSELVRFALRIGLL 216 >gi|254463119|ref|ZP_05076535.1| DNA-binding response regulator, LuxR family [Rhodobacterales bacterium HTCC2083] gi|206679708|gb|EDZ44195.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium HTCC2083] Length = 201 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G +++E+A L +SV TV + + KL + A+ Sbjct: 132 DALTGREQTVLLQLAKGQSNKEVAAALNISVRTVETHRKNIKRKLGISSTAGLTRYAMEH 191 Query: 232 GYI 234 G + Sbjct: 192 GVL 194 >gi|149203772|ref|ZP_01880741.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149142889|gb|EDM30931.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 200 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + LT RE + L G +++++A+ L +SV TV + + KL + Sbjct: 121 SLEPYENPEREQLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIAST 180 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 181 AGLTRYALEHGVL 193 >gi|82544573|ref|YP_408520.1| transcriptional regulator NarP [Shigella boydii Sb227] gi|81245984|gb|ABB66692.1| nitrate/nitrite response regulator [Shigella boydii Sb227] gi|320185869|gb|EFW60619.1| Nitrate/nitrite response regulator protein [Shigella flexneri CDC 796-83] gi|332093584|gb|EGI98642.1| response regulator [Shigella boydii 3594-74] Length = 215 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|110642402|ref|YP_670132.1| transcriptional regulator NarP [Escherichia coli 536] gi|191170199|ref|ZP_03031753.1| nitrate/nitrite response regulator NarP [Escherichia coli F11] gi|215487411|ref|YP_002329842.1| transcriptional regulator NarP [Escherichia coli O127:H6 str. E2348/69] gi|218559110|ref|YP_002392023.1| transcriptional regulator NarP [Escherichia coli S88] gi|218690355|ref|YP_002398567.1| transcriptional regulator NarP [Escherichia coli ED1a] gi|306814694|ref|ZP_07448856.1| transcriptional regulator NarP [Escherichia coli NC101] gi|312967493|ref|ZP_07781708.1| response regulator [Escherichia coli 2362-75] gi|331658272|ref|ZP_08359234.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA206] gi|110343994|gb|ABG70231.1| nitrate/nitrite response regulator protein NarP [Escherichia coli 536] gi|190909715|gb|EDV69300.1| nitrate/nitrite response regulator NarP [Escherichia coli F11] gi|215265483|emb|CAS09885.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O127:H6 str. E2348/69] gi|218365879|emb|CAR03621.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli S88] gi|218427919|emb|CAR08839.2| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli ED1a] gi|281179284|dbj|BAI55614.1| nitrate/nitrite response regulator [Escherichia coli SE15] gi|294492603|gb|ADE91359.1| DNA-binding response regulator, LuxR family [Escherichia coli IHE3034] gi|305852088|gb|EFM52540.1| transcriptional regulator NarP [Escherichia coli NC101] gi|307554259|gb|ADN47034.1| nitrate/nitrite response regulator protein NarP [Escherichia coli ABU 83972] gi|307626269|gb|ADN70573.1| transcriptional regulator NarP [Escherichia coli UM146] gi|312287690|gb|EFR15595.1| response regulator [Escherichia coli 2362-75] gi|312946814|gb|ADR27641.1| transcriptional regulator NarP [Escherichia coli O83:H1 str. NRG 857C] gi|320196066|gb|EFW70690.1| Nitrate/nitrite response regulator protein [Escherichia coli WV_060327] gi|323188081|gb|EFZ73376.1| response regulator [Escherichia coli RN587/1] gi|323951986|gb|EGB47860.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323955960|gb|EGB51713.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|330912024|gb|EGH40534.1| nitrate/nitrite response regulator protein [Escherichia coli AA86] gi|331056520|gb|EGI28529.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA206] Length = 215 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|271962987|ref|YP_003337183.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506162|gb|ACZ84440.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 6/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAAR 172 + + GYV+ + L V A G L ++ A Sbjct: 89 SVFAAMRAGARGYVLKGARKAELVRSVQAVAEGEAIFGPAIAARLTGYFTERERSEPALP 148 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L + T+ +IA +LGLS TV ++ + KL +R AI +A G Sbjct: 149 ELTRREREILGLVAEHLTNPQIAARLGLSQKTVRNHVSAVFSKLQVADRAHAIMRAREAG 208 Query: 233 Y 233 Sbjct: 209 L 209 >gi|84497934|ref|ZP_00996731.1| putative two-component system DNA-binding response regulator [Janibacter sp. HTCC2649] gi|84381434|gb|EAP97317.1| putative two-component system DNA-binding response regulator [Janibacter sp. HTCC2649] Length = 238 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 4/124 (3%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + + + A + E+ ++ Sbjct: 119 RAGARGYVTKTITARDLGTAVRRVADGDAVFSPRLAGFVLDAFGAAAGEIAEVDEE---- 174 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE ++L GY +E+A++L +SV TV ++ S KL +R + A A+ Sbjct: 175 LDRLSAREREVMRLIARGYQYKEVAKELFISVKTVETHVSSVLRKLQLSSRHELTAWAMG 234 Query: 231 FGYI 234 + Sbjct: 235 RRLV 238 >gi|319951571|ref|ZP_08025372.1| regulatory protein, LuxR [Dietzia cinnamea P4] gi|319434774|gb|EFV90093.1| regulatory protein, LuxR [Dietzia cinnamea P4] Length = 205 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETS 180 L +G++ + L + + A G + L + K + L+ RE Sbjct: 89 SLDAGAHGFLSKSLTAPELVSGIEQIAAGKRVTLTGAGLPIMGPDKWPAKEAGLSHREAE 148 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + L G ++E+IAE+ LS++TV Y+ SA K+D R QA+A I G Sbjct: 149 VVSLIVQGLSNEQIAEQCYLSLNTVKTYVRSAYRKMDVATRAQAVAWGIGNGL 201 >gi|260774409|ref|ZP_05883323.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14] gi|260610536|gb|EEX35741.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14] Length = 209 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 10/183 (5%) Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + ++ YGD P+ + ES L RL+ F I Sbjct: 23 VEDDIQVVGEYGDAQAAFLALSKKPVDVVIMDISMPDESGLSLLARLKTLHPHFKAIILS 82 Query: 122 VRLGFH------KNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFL--ELFKKRSSAA 171 + +G + S+ + + I + D L + + Sbjct: 83 IYDSASFVSKAIDSGASGYLSKRCGPSELVDAIRMVARGHRYLCADALFNLSNPQEKNVL 142 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L G ++EI + L LS TV+ + + KL N + I AI+ Sbjct: 143 MELTKREREIFFLLIQGKDAKEIGQVLFLSYKTVHVHRANILNKLGLSNIVDLIRFAIQH 202 Query: 232 GYI 234 + Sbjct: 203 RLL 205 >gi|171909690|ref|ZP_02925160.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 212 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%) Query: 136 SEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDG 188 S E I + H + ++ F+ + + L+ RE ++L G Sbjct: 108 SSAPEKLFEAIRDVHSGGAQFSAHIARRVVQYFRGPTKPVDESEKLSPREGEVIELLASG 167 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 Y +EIA+KLG+ TV Y+ + VKL NR +A+AK Sbjct: 168 YIYKEIADKLGIGTETVRTYVKNICVKLRVKNRTEAVAK 206 >gi|332526102|ref|ZP_08402240.1| response regulator [Rubrivivax benzoatilyticus JA2] gi|332109945|gb|EGJ10573.1| response regulator [Rubrivivax benzoatilyticus JA2] Length = 245 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +K LT RE+ L G+T +EIA +G+ TVN ++ S KL+ +R + Sbjct: 175 MEKALPEHERLTPRESEVLTYLSKGFTIKEIASLMGIKWFTVNDHIKSIYKKLNVSSRAE 234 Query: 224 AIAKAIRFGYI 234 A A + G + Sbjct: 235 AAVLASKQGLV 245 >gi|237713861|ref|ZP_04544342.1| transcriptional regulator [Bacteroides sp. D1] gi|262409230|ref|ZP_06085774.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294645794|ref|ZP_06723478.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294809468|ref|ZP_06768172.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|229446017|gb|EEO51808.1| transcriptional regulator [Bacteroides sp. D1] gi|262352977|gb|EEZ02073.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292638873|gb|EFF57207.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294443340|gb|EFG12103.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] Length = 255 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + ++ + L L + NLT RE L+L G S+EIA+KL +S+HTVN + Sbjct: 174 LNLKNGEIFSPSLSLM-----PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIH 228 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL N I+AI G + Sbjct: 229 RQNLLRKLGVQNSIEAIRLGQESGLL 254 >gi|253700593|ref|YP_003021782.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251775443|gb|ACT18024.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 216 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + ++ +LT RE +L G +EIA +L +S TV Y KL+ N Sbjct: 139 ADEGKNPCKYSLTPREEQAYRLLVVGKNCKEIAYELNISSKTVETYRLKIMKKLNLSNIA 198 Query: 223 QAIAKAIRFGYI 234 Q + A++ G + Sbjct: 199 QLVNHAVQEGIV 210 >gi|188585380|ref|YP_001916925.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350067|gb|ACB84337.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 232 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE QL G ++++IAEKL ++ TV Y+ + KL R A+ + Sbjct: 171 EELTQREIEIAQLMVAGLSNKKIAEKLFITQGTVKNYITNIYSKLGVKERTSAVLYLQKL 230 Query: 232 GY 233 G+ Sbjct: 231 GF 232 >gi|144899605|emb|CAM76469.1| DNA-binding response regulator, LuxR family [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + L+ RE+ L L +G T++EIA L L T+ +L + K+ A NR QA+ Sbjct: 153 IPAPFDKLSRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIGAANRAQAVR 212 Query: 227 KAIRFGY 233 A+ G+ Sbjct: 213 IAMSSGW 219 >gi|21231619|ref|NP_637536.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768259|ref|YP_243021.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991396|ref|YP_001903406.1| Two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|21113311|gb|AAM41460.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573591|gb|AAY49001.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733156|emb|CAP51354.1| Two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. campestris] Length = 213 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L L G ++++I LG+S TV A++ + KL +R A+ A+R Sbjct: 147 DALSARETEVLNLVATGCSNKQIGNALGISEETVKAHMKNILCKLGVRDRTHAVTVALRR 206 Query: 232 GYI 234 G + Sbjct: 207 GIL 209 >gi|23100305|ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778537|dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 199 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 4/105 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 NGY++ S LAN + G EL LT RE L+L DG Sbjct: 97 NGYLLKDSPSEDLANSIRAIMAGRKVYA----PELIDMAYEEGNPLTTREEQVLKLIADG 152 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T++EIA +L L+ TV Y+ + KL+ NRI+AI++ G+ Sbjct: 153 KTTKEIAGQLYLTNGTVRNYVSTIMDKLNVSNRIEAISRIKEKGW 197 >gi|308051091|ref|YP_003914657.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307633281|gb|ADN77583.1| two component transcriptional regulator, LuxR family [Ferrimonas balearica DSM 9799] Length = 204 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 9/148 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146 + S + + F V V+ E + Sbjct: 56 LDLNMRPLSGLDTLRAIRRDFPRLKVVMFTVSDHPRDVQAVLDAGANGYLVKDSEPEELV 115 Query: 147 --IEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + A V+T LE L + + A LT RE +L +G +++ I E L +S Sbjct: 116 EGLAEVMAGQAVLTPRLEGALAEAEENWAAQLTPRERQIAELIAEGKSNKAIGEALFISE 175 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T ++ + K D +R++ K Sbjct: 176 GTAKVHVKNLMRKTDCHSRVELALKVRE 203 >gi|262202778|ref|YP_003273986.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086125|gb|ACY22093.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 220 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY++ + L + V A G L + R+ LT RE + Sbjct: 110 AGASGYLLKDTPPEELVSAVRGAAAGESALSPAVASRLLSRMRTPPDTVLTPREIEIIAE 169 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IA +L LS TV ++L A KL +R A+A+A R G I Sbjct: 170 VATGRSNRQIARELMLSEMTVKSHLVHAFTKLGVGSRTAAVAEARRRGVI 219 >gi|226365558|ref|YP_002783341.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244048|dbj|BAH54396.1| NarL family two-component response regulator [Rhodococcus opacus B4] Length = 208 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 41/107 (38%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S + V A G L ++ LT RE L L Sbjct: 98 DAGAIGYLLKDSTPQEIFAAVRGAAAGQSVLSPPVASRLLQQMQRPEEALTPREAELLTL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G T++E+ + L +S TV +L KL R A++ A+R Sbjct: 158 LAKGMTNKELGKALFISEATVKTHLAHIYSKLGVDTRAAAVSVALRR 204 >gi|254476945|ref|ZP_05090331.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11] gi|214031188|gb|EEB72023.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11] Length = 214 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K + LT RE + L G +++++A L +SV TV + + KL + Sbjct: 135 SLKPKDNPDREALTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISST 194 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 195 AGLTRYALEHGVL 207 >gi|261405834|ref|YP_003242075.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329926559|ref|ZP_08280972.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261282297|gb|ACX64268.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328939100|gb|EGG35463.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 215 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +L++RE L L GY ++EIAEKL +SV TV A+ KL +R + Sbjct: 143 ESAEQDPFNSLSQREIEILPLIAKGYGNKEIAEKLFVSVKTVEAHKAKIMEKLKLKSRPE 202 Query: 224 AIAKAIRFGYI 234 + A++ + Sbjct: 203 LVEYALKKKLL 213 >gi|42525668|ref|NP_970766.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|41815679|gb|AAS10647.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|325475224|gb|EGC78409.1| DNA-binding response regulator [Treponema denticola F0402] Length = 201 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 RS +L +RET L+L DG ++EIA +L LS TV Y+ S KL+ +R Q Sbjct: 135 PARSQFKEDLNDRETDILELVADGLNNKEIANRLSLSEGTVRNYVSSILEKLNLRDRTQL 194 Query: 225 IAK 227 + Sbjct: 195 VVY 197 >gi|327468268|gb|EGF13753.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 199 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|302520212|ref|ZP_07272554.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318062155|ref|ZP_07980876.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|302429107|gb|EFL00923.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 224 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 2/108 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAG 186 + +LA V +V L A LTERET L Sbjct: 114 EAVEVVARGEALLAPSVTRRLITEFARVPETVLRGPASPHPGGAYGELTERETEVLVHVA 173 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL ++ TV ++ VKL +R QA A + Sbjct: 174 RGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAAVFAYENRLV 221 >gi|238752048|ref|ZP_04613532.1| Two component transcriptional regulator, LuxR family [Yersinia rohdei ATCC 43380] gi|238709748|gb|EEQ01982.1| Two component transcriptional regulator, LuxR family [Yersinia rohdei ATCC 43380] Length = 237 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + I V +I E++++ + Sbjct: 100 LRNEGIDARVIILTVSDARSDVYAMIDAGADGYLLKDSEPEILLDNIRHAAKGEKVFSNE 159 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 160 VVIYLSSRHEQVNPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 219 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 220 NVRSRVAATIM 230 >gi|311895574|dbj|BAJ27982.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 220 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 151 GACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 G V+ +F L + AA LT RET L+L G + +IA++L LS TV Sbjct: 126 GLAGLVLGEFRRLATEPGTSAEPAAPQLTPRETEVLRLVAKGLSYRQIADRLVLSHRTVQ 185 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL NR++ + AI G Sbjct: 186 NHVQNTLGKLQLHNRVELVRYAIEQGL 212 >gi|170758988|ref|YP_001788912.1| transcriptional regulatory protein DegU (protease production enhancerprotein) [Clostridium botulinum A3 str. Loch Maree] gi|169405977|gb|ACA54388.1| transcriptional regulatory protein DegU [Clostridium botulinum A3 str. Loch Maree] Length = 219 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +L G ++++I L L+ TV Y+ KL+ NR + + Sbjct: 158 DALTPREREVAKLVSQGKSNKDICNILFLTEGTVKNYVTRILEKLELNNRTELALFINQD 217 Query: 232 GY 233 G Sbjct: 218 GL 219 >gi|152987214|ref|YP_001346031.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962372|gb|ABR84397.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7] Length = 496 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 11/138 (7%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITD 159 G + A + ++ S+ E+ + + +I Sbjct: 348 DRNGLDCLVSAEAVSLNEQDCVLVALLDISDRRRTEMELVHAIETVMQDTSWFSRTLIEK 407 Query: 160 FLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + +LT RE L G +EIA++LGL+ +TV ++ + K Sbjct: 408 LANVRRANAPGTGAELADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAK 467 Query: 216 LDAVNRIQAIAKAIRFGY 233 LD +R +AI A G+ Sbjct: 468 LDVHSRGEAIVWARERGF 485 >gi|110634798|ref|YP_675006.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285782|gb|ABG63841.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 554 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G S L A E A D L L + + LT RE L+ Sbjct: 447 LACRGMGDEEGASLELAAAREAFQALGAAPDMARIDRLALPRN---TRKGLTRRELEVLR 503 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ IA +L LS T++ +L + KL +R A A A R G + Sbjct: 504 LVTAGKPNKVIAAELFLSEKTIDRHLSNIFDKLGVSSRTAAAAWAFRQGLV 554 >gi|325002947|ref|ZP_08124059.1| NarL family two-component response regulator [Pseudonocardia sp. P1] Length = 236 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + L LT+RE L+L G ++ I +L +S TV ++G Sbjct: 156 ARSASAMVRSLS---GGMPDRERLTDRELDVLRLLARGLSNRAIGAELFISETTVKFHVG 212 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL R +A+ A + G + Sbjct: 213 NLMRKLMVSRRAEAVYAATKLGLL 236 >gi|224369516|ref|YP_002603680.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein [Desulfobacterium autotrophicum HRM2] gi|223692233|gb|ACN15516.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein [Desulfobacterium autotrophicum HRM2] Length = 219 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQL +G+ + EIA L +S TV A+ KL + AIR Sbjct: 154 DLLSAREREVLQLIAEGHANREIAGHLYISPKTVEAHRNHIQKKLGLNGTAELTKYAIRK 213 Query: 232 GYI 234 G + Sbjct: 214 GLV 216 >gi|88799767|ref|ZP_01115341.1| two-component response regulator NarL [Reinekea sp. MED297] gi|88777501|gb|EAR08702.1| two-component response regulator NarL [Reinekea sp. MED297] Length = 213 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 17/157 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + Q +L + I F V I + E + Sbjct: 53 LDLNMPGQDGLQTLNKLRDAGVDARIIVFTVSDDQADIHRAIHNGADGYLLKDIDPEEFL 112 Query: 148 EAHGACYQ-----------VITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E+ C Q V+ L L + A R+LT+RE L+L G ++ I Sbjct: 113 ESIKRCMQGEQVVSPGIQDVVRSALSKRLPENLHPALRDLTDREKDVLRLIAAGLPNKSI 172 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L ++ TV ++ KL +R++A A Sbjct: 173 GQNLDIAEGTVKVHVKRVLSKLGLRSRVEAAIFAHEH 209 >gi|323492987|ref|ZP_08098124.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323312766|gb|EGA65893.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 212 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS L+ RE + L+L +G +S+E+A L +S TV + + KLD + + Sbjct: 145 SSKPNPLSRREEAILKLVAEGKSSKEVASILNISYRTVETHRQNIKHKLDLHSTAELAKY 204 Query: 228 AIRFGYI 234 A+ G + Sbjct: 205 AVEKGIV 211 >gi|238025036|ref|YP_002909268.1| FOG PAS/PAC domain-containing protein [Burkholderia glumae BGR1] gi|237879701|gb|ACR32033.1| FOG: PAS/PAC domain protein [Burkholderia glumae BGR1] Length = 529 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 11/135 (8%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLEL 163 + A + ++ SE E+I +A +I + Sbjct: 365 RDCVVSADAVAIHGQDCILMALLDISERKRTEMELIQAIETAMQDASWFSRTLIEKLANV 424 Query: 164 FKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + ++ A +LT RE L G +EIA +LGL+ +TV ++ + KLD Sbjct: 425 RRAKAPDAGAQLADLTARERDVFDLLCHGLPDKEIANRLGLAPNTVRNHVATIYTKLDVH 484 Query: 220 NRIQAIAKAIRFGYI 234 +R +AI A G + Sbjct: 485 SRGEAIVWARERGIV 499 >gi|291302402|ref|YP_003513680.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571622|gb|ADD44587.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + LAG G ++EEI KL LS T ++ A +KL A +R Q + A Sbjct: 156 EQLTEREREVVALAGTGLSNEEIGAKLFLSPATAKTHISRAMIKLGARDRAQLVVFAYES 215 Query: 232 GYI 234 G + Sbjct: 216 GLV 218 >gi|237732242|ref|ZP_04562723.1| transcriptional regulator NarP [Citrobacter sp. 30_2] gi|226907781|gb|EEH93699.1| transcriptional regulator NarP [Citrobacter sp. 30_2] Length = 225 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA A Sbjct: 81 LNALRRDGVTAQIIILTVSDAASDVYALIDAGADGYLLKDSDPEVLLEAIRNGAKGGKAF 140 Query: 154 YQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++++L LF + LTERE L G ++++IA L +S TV ++ Sbjct: 141 SARVSEYLRERDLFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAATIL 217 >gi|254446726|ref|ZP_05060201.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198256151|gb|EDY80460.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 222 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 41/86 (47%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 C ++ + + + L+ RE LQ +G+++++IAE L +SV T+ A+ Sbjct: 122 LCPICASLLRESHLVGSAVAKKKNRLSNREREVLQAVAEGFSTKQIAEMLEVSVKTIEAH 181 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KLDA + ++ A G I Sbjct: 182 RANLMKKLDARSAVELTRCAFELGII 207 >gi|194292820|ref|YP_002008727.1| response regulator in two-component regulatory system with narx, regulates anaerobic respiration and fermentation (luxr/uhpa familiy) [Cupriavidus taiwanensis LMG 19424] gi|193226724|emb|CAQ72675.1| response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Cupriavidus taiwanensis LMG 19424] Length = 217 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + + ++ + A ++ + L + + LT RE +Q G Sbjct: 114 AGIRRAAAGEPVISDSMTAKLVAQFRAPVPAVALRQDDAP---RLTAREREIVQGLARGE 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++EIA LG++ TV ++ + KL+ +R+Q A+ G Sbjct: 171 SNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214 >gi|183984750|ref|YP_001853041.1| nitrate/nitrite response regulator protein NarL [Mycobacterium marinum M] gi|183178076|gb|ACC43186.1| nitrate/nitrite response regulator protein NarL [Mycobacterium marinum M] Length = 216 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + LP + G+++ S Sbjct: 56 DVALLDYRMPRMDGAQVAAAVRSNELPTRVLLISAHDESAIVYQALQQGAAGFLLKDSTR 115 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ + A L+ RE L G + I Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPMAPVLSAREREVLHRIAKGQSIPAI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 176 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 215 >gi|114046728|ref|YP_737278.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113888170|gb|ABI42221.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 225 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H V+ + L+ERE L G++++EIA + L+ TV Sbjct: 139 HLIEPSVLEQMQQSSATAQSVPTHDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKN 198 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KLD +R QA+ K ++ I Sbjct: 199 HVSTILTKLDCRDRTQAVLKGLQLSLI 225 >gi|333026039|ref|ZP_08454103.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745891|gb|EGJ76332.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 220 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 2/108 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAG 186 + +LA V +V L A LTERET L Sbjct: 110 EAVEVVARGEALLAPSVTRRLITEFARVPETVLRGPASPHPGGAYGELTERETEVLVHVA 169 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL ++ TV ++ VKL +R QA A + Sbjct: 170 RGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAAVFAYENRLV 217 >gi|312867968|ref|ZP_07728172.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] gi|311096372|gb|EFQ54612.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] Length = 199 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 44/91 (48%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +++ H EL + + L+ +E + L+ G +++EIA++L LS Sbjct: 109 DLMATLHAVLAGQKEYSPELMEGILTHPNPLSPQEQAVLKEVAKGASNQEIADRLFLSNG 168 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KL+A NR +A A G++ Sbjct: 169 TIRNYMSAILTKLNAENRTEAARIAQEKGWL 199 >gi|260899471|ref|ZP_05907866.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|308109241|gb|EFO46781.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] Length = 217 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + +++ + + + LT RE L Sbjct: 112 DKVMMGLKGILNGENWLSRDILNQLIGYLLSLNNTVGELETKLEMELTRRELQVLSALCQ 171 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G ++ +IA+ L +S HTV ++L S KL+ NR+QAI A R Sbjct: 172 GGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215 >gi|226356513|ref|YP_002786253.1| DNA-binding response regulator [Deinococcus deserti VCD115] gi|226318503|gb|ACO46499.1| putative DNA-binding response regulator [Deinococcus deserti VCD115] Length = 216 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%) Query: 140 MLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 +++ + +A A + L + +LT +ET LQL G ++ Sbjct: 110 DASSDTLADAIHAAARGEVRLHPEAARRLVRDFRSPEMRESLTPKETIVLQLIARGCSNR 169 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +IA+ G+S TV ++ KL +R QA A+R G Sbjct: 170 DIAQDQGVSEATVKTHVSRLLSKLGLESRTQAALYALRHGI 210 >gi|297191011|ref|ZP_06908409.1| two component system DNA binding response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297150723|gb|EDY65386.2| two component system DNA binding response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 213 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + A LT+RE LQL Sbjct: 103 AGAAGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAEALTKRELEVLQLV 162 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GDG ++ +I+++L LS TV ++L KL +R A+A A I Sbjct: 163 GDGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211 >gi|256830668|ref|YP_003159396.1| LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579844|gb|ACU90980.1| transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 335 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%) Query: 151 GACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + ++ FL + R + L++RE L + G T+++IA+KL LS++ Sbjct: 241 WFSREAMSAFLLGKQNRPAELSAPENGQADLSQREQEILLMLAAGATNKDIAQKLFLSLN 300 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TV +++ + K+D NR+QA A R Sbjct: 301 TVKSHIYNIYKKIDVPNRLQASLWAARH 328 >gi|71279999|ref|YP_268149.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71145739|gb|AAZ26212.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 215 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT RE L G TS+EIA+ L +S TV A+ + KL + + I+ A++ Sbjct: 150 SEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMKTKLGIHSLAKLISYAVK 209 Query: 231 FGYI 234 G I Sbjct: 210 HGII 213 >gi|307322284|ref|ZP_07601649.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306892066|gb|EFN22887.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 255 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%) Query: 135 TSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + A + Q + ++L +K LT RET L L G ++ Sbjct: 146 AALLRRPAPRGLAGGGLVAQKQASLEDIDLERKIDFGQDLLTMRETQILDLICVGMQNKI 205 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 IA++LGLS +TV ++ + K++ NR +A A+ R Sbjct: 206 IADRLGLSENTVKVHVRNIYKKMNVRNRTEAAARYFR 242 >gi|297528772|ref|YP_003670047.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252024|gb|ADI25470.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 550 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT RE L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA + Sbjct: 483 SEQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQ 542 Query: 231 F 231 Sbjct: 543 L 543 >gi|270262679|ref|ZP_06190950.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043363|gb|EFA16456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 950 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 13/236 (5%) Query: 6 LTGKKSS--SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 + +++ ++L +L + + A + + + Sbjct: 720 VRLQRADRPGAEQLQRQLEQLARHARIDAEHPCQRAIAQHAALSRSRLLLAAGQMPQACK 779 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG----QLSVRLEGG-LLPFAGI 118 + L+ T ++ + L +W + ++ Q + L L + Sbjct: 780 LLAELV-TEQENRRDWLTAARLRALWSLALWKAGKNAAACTALQPVLPLAEHPHLMRSF- 837 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + G ++ E NE + L + L+ERE Sbjct: 838 ---LDAGDTLQPLLLHMHEGPAACNEQ-GAQLRLADKGALTGERLLQSSHDVYWGLSERE 893 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G T+++IA L +S TV +L + KL+ +R QA+++A+ + Sbjct: 894 LQVLRLIAEGQTNKDIARSLAISAQTVKWHLKNTYAKLNVNSRTQAMSRALEMKLL 949 >gi|251799214|ref|YP_003013945.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546840|gb|ACT03859.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 217 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 9/119 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLT 175 GYV+ + L + A G Y +++ ++++ ++ S L+ Sbjct: 96 HAGAAGYVLKNAPHEELLTAIRSIAQGDAYLYPTATKRLMKEYVDRMQRGDSGDLFHALS 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L L GY ++E+AE L +SV TV + + KL +R + I A++ G + Sbjct: 156 EREKEVLSLTAKGYANKEMAEMLVISVKTVETHKSNVMEKLGLKSRPELIKYAMKKGLL 214 >gi|153206810|ref|ZP_01945651.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|165924176|ref|ZP_02220008.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334] gi|212212538|ref|YP_002303474.1| response regulator [Coxiella burnetii CbuG_Q212] gi|212218401|ref|YP_002305188.1| response regulator [Coxiella burnetii CbuK_Q154] gi|120577173|gb|EAX33797.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|165916380|gb|EDR34984.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334] gi|212010948|gb|ACJ18329.1| response regulator [Coxiella burnetii CbuG_Q212] gi|212012663|gb|ACJ20043.1| response regulator [Coxiella burnetii CbuK_Q154] Length = 214 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 117 GIAFPVRLGF-HKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN 173 G P+RL G++ +S+ L + + I + L L K ++A Sbjct: 86 GDLLPMRLLEVGVRGFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSKTTTAATSP 145 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L L G +E IA++L ++ TVN++ KL N ++ I A++ Sbjct: 146 FKKLSDREMEVLLLLAKGKKAEAIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQ 205 Query: 231 FGYI 234 +G + Sbjct: 206 YGLV 209 >gi|91788405|ref|YP_549357.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91697630|gb|ABE44459.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 230 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +++ + L++RE L+ GYTS EI +L +S TVN Sbjct: 144 LARRLLHRLEHTQEAPHPHTAEKRDKLSDREKEVLKAVAAGYTSGEIGSRLMISCQTVNT 203 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R QA+ A G + Sbjct: 204 HIKNIYRKLQVRSRAQAVNFAAHRGLL 230 >gi|325675545|ref|ZP_08155229.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553516|gb|EGD23194.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 224 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 3/123 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + +G + + + A Sbjct: 104 RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPPLDPE 160 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE+L +SV TV + + K NR A R Sbjct: 161 LDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHR 220 Query: 231 FGY 233 Sbjct: 221 RRI 223 >gi|282864894|ref|ZP_06273948.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560319|gb|EFB65867.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 210 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 51/109 (46%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + A+ LT+RE LQL Sbjct: 100 AGAGGYLLKDAPPQELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAQALTKRELEVLQLV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++++I+++L LS TV ++L KL +R A+A A I Sbjct: 160 GEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 208 >gi|269837299|ref|YP_003319527.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786562|gb|ACZ38705.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 219 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 42/82 (51%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + ++ A LT+RE LQ DG + +EIAE+L +S TV ++ + Sbjct: 135 ALRFVDQERRREREARQAFEPLTDREREVLQALADGLSDKEIAERLYISPATVRTHITAI 194 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R+QA+ A R + Sbjct: 195 LGKLDANSRLQAVVVAARHNLV 216 >gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 231 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L LT RE S L L +G ++EIA +L SV V Y+ K +R Sbjct: 159 LTTTPPPIKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRT 218 Query: 223 QAIAKAIRFGY 233 + + A++ G Sbjct: 219 ELVRFALKHGL 229 >gi|330502102|ref|YP_004378971.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328916388|gb|AEB57219.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 868 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 42/84 (50%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ L + S+ L+ RE + LQL GY+++EIA++L +S+HTV + Sbjct: 782 QSLHQRLFEPAPRLDEPASAGTALLSSRELAVLQLIAQGYSNQEIADRLFISLHTVKTHA 841 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 VKL R QA+A A G Sbjct: 842 RRINVKLGVQRRTQAVAMAKAQGL 865 >gi|320158185|ref|YP_004190563.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] gi|319933497|gb|ADV88360.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] Length = 212 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G ++++IA KL + +TV +L + K+D NR+QA+ A Sbjct: 146 KLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWAKEH 204 >gi|300088236|ref|YP_003758758.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527969|gb|ADJ26437.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 232 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+LA G ++ +IAEKL LS+ TV A+L + K+ +R +AI K R G Sbjct: 154 QLSPREIEILRLAARGLSNRDIAEKLELSMRTVKAHLSNIFNKMRCSSRTEAIVKGFREG 213 Query: 233 YI 234 Y+ Sbjct: 214 YV 215 >gi|260428295|ref|ZP_05782274.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260422787|gb|EEX16038.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 220 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCL 182 L G+V T L N V + G Y + +K + A L+ RE L Sbjct: 109 LAAGAAGFVPKTLSAKSLVNAVRFMSMGEQYAPLEFLRTAEEKEGNPLADRLSRREMEVL 168 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + G +++EIA L + TV ++ + K+ A NR QA A G Sbjct: 169 ERLTQGKSNKEIARDLDIREPTVKLHVKTLYRKIGAANRTQAAIFAKEAGL 219 >gi|254509824|ref|ZP_05121891.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium KLH11] gi|221533535|gb|EEE36523.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium KLH11] Length = 215 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K +A LT RE + L G +++E+A L +SV TV + + KL + Sbjct: 136 SLEPKDGNAREALTGREQTILLELAQGKSNKEVALALDISVRTVETHRKNIKRKLGISST 195 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 196 AGLTRYALEHGVL 208 >gi|251798920|ref|YP_003013651.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546546|gb|ACT03565.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 225 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + LT RE L+L G ++++IA+ L ++ TV ++ S KLD +R QA Sbjct: 153 RDKSLEALTPRELEVLELLTKGLSNKDIAQTLIVAEKTVKTHVSSILSKLDLSDRTQAAL 212 Query: 227 KA 228 A Sbjct: 213 FA 214 >gi|27367915|ref|NP_763442.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6] gi|27359488|gb|AAO08432.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6] Length = 221 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G ++++IA KL + +TV +L + K+D NR+QA+ A Sbjct: 155 KLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWAKEH 213 >gi|29654353|ref|NP_820045.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA 493] gi|161830925|ref|YP_001596685.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331] gi|29541620|gb|AAO90559.1| response regulator [Coxiella burnetii RSA 493] gi|161762792|gb|ABX78434.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331] Length = 214 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 117 GIAFPVRLGF-HKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSS---A 170 G P+RL G++ +S+ L + + I + L L K ++ Sbjct: 86 GDLLPMRLLEVGVRGFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSKTTTAATCP 145 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L++RE L L G +E IA++L ++ TVN++ KL N ++ I A++ Sbjct: 146 FKKLSDREMEVLLLLAKGKKAEAIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQ 205 Query: 231 FGYI 234 +G + Sbjct: 206 YGLV 209 >gi|37676042|ref|NP_936438.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|37200582|dbj|BAC96408.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] Length = 224 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G ++++IA KL + +TV +L + K+D NR+QA+ A Sbjct: 158 KLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWAKEH 216 >gi|145225590|ref|YP_001136268.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315445943|ref|YP_004078822.1| LuxR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145218076|gb|ABP47480.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315264246|gb|ADU00988.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. Spyr1] Length = 209 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 3/116 (2%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + +R+G +SE L+ E + H + + A + LT+R Sbjct: 95 LFQAMRVGASGYLLKSISSEDLV---EQLESVHSGKTAIDPTMAARAVEWPGARQGLTQR 151 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E+ L L +G ++ IA KL + TV +L S KL +R A+A A+R G Sbjct: 152 ESEILALVVNGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDRTAAVATALREGI 207 >gi|260060932|ref|YP_003194012.1| LuxR family transcriptional regulator [Robiginitalea biformata HTCC2501] gi|88785064|gb|EAR16233.1| transcriptional regulator, LuxR family protein [Robiginitalea biformata HTCC2501] Length = 139 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LTERETSCLQLAGDGYTS 191 E I + + +I L+ + +R LT RE L G ++ Sbjct: 32 DPEWIFGSLAVLFLLIGMGLQRHARPKPPSREADQRKIRQLGLTPRECEVLLPLCKGLSN 91 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA++L +S TV ++ + VKLD R Q I KA + Sbjct: 92 REIADELHISESTVKTHVSNLLVKLDVRRRTQVIRKARALNLL 134 >gi|317125008|ref|YP_004099120.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589096|gb|ADU48393.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 228 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 ++ V Q + ++ +++T RE L+L +G +++ Sbjct: 120 SVMRNETPISPGVAGRLLREIRQAGKP--RVTSPAATTEQSVTRRELEILRLVAEGLSNK 177 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA++L ++ TV ++ +A KL NRIQA A IR G Sbjct: 178 EIAKRLVITEGTVKNHVHNALEKLHMDNRIQAAAYVIRQGL 218 >gi|322434963|ref|YP_004217175.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321162690|gb|ADW68395.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 41/88 (46%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I A + + L + ++ RE LQ G +++ +A L +S HTV Sbjct: 120 IRVVHAGRRRMPPELAQQIAEYAMEDAVSPRELEVLQEVSRGKSNKIVAGDLNISEHTVK 179 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L S KLDA +R A+ AIR GYI Sbjct: 180 NHLKSILSKLDASDRTDAVVIAIRRGYI 207 >gi|78185167|ref|YP_377602.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169461|gb|ABB26558.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 227 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L++RE+ L+ G +++E+AE L +S T+ +++ + KL +R QA+ AI Sbjct: 164 ALAGLSDRESEVLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAI 223 Query: 230 RFGY 233 R G Sbjct: 224 RAGM 227 >gi|312961179|ref|ZP_07775684.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284837|gb|EFQ63413.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 217 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ E ++ A +LT RE L L +G ++ I E+LG++ T A++ Sbjct: 131 AVSARLLRRMTERQASGAAPAEHLTPRERQVLGLVANGMSNRAIGEQLGITTGTAKAHVE 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R QA + I G + Sbjct: 191 RVIGKLGAADRTQAAVRGIALGLV 214 >gi|182437835|ref|YP_001825554.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778470|ref|ZP_08237735.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466351|dbj|BAG20871.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658803|gb|EGE43649.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 214 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S LT+RE L Sbjct: 105 AGATGYLLKAERPEELFAAIRSAAQGRTTLSAPVASRVMARMRSPRPGLTDRERDILAQL 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A++ A + Sbjct: 165 SQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213 >gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 232 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 40/99 (40%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 T+ E+ E Q+ L S +LT RE S L L +G ++EI Sbjct: 132 TATDSAKLEEIAQEIRELKQQLGQQQNTLTTTPSPIKIDLTPREQSVLDLVAEGLMNKEI 191 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L SV V Y+ K +R + + A++ G Sbjct: 192 AARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230 >gi|118468546|ref|YP_885876.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis str. MC2 155] gi|118169833|gb|ABK70729.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis str. MC2 155] Length = 220 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 36/73 (49%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+ + A + LT+RE+ L G ++ IA KL + TV +L S KL + Sbjct: 146 LQRDEFWPGARQGLTQRESEILSFVVAGLSNRGIANKLVIGEETVKTHLRSIYRKLGVSD 205 Query: 221 RIQAIAKAIRFGY 233 R A+A A+R G Sbjct: 206 RAGAVATALREGI 218 >gi|86740241|ref|YP_480641.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567103|gb|ABD10912.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 357 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 35/78 (44%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L + ++ LT RE L G ++ E A +L +S TV AYL S KL Sbjct: 279 LLRGLLAEETKTVGRLTLTPRELEVLAQVSLGLSNVETARRLTVSPETVKAYLRSIMRKL 338 Query: 217 DAVNRIQAIAKAIRFGYI 234 NR A+ A + G + Sbjct: 339 GVRNRTAAVHAARQMGML 356 >gi|21222522|ref|NP_628301.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256786408|ref|ZP_05524839.1| two-component system response regulator [Streptomyces lividans TK24] gi|8052435|emb|CAB92376.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 7/138 (5%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + + V L Sbjct: 84 FDLDEYAYSGLRAGASGFLVKDALPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPA 143 Query: 164 FKKRS-------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 R LTERET L++ G G+T+ EIAE+L L+ TV ++G K Sbjct: 144 AGTRDHTPGSPDPRLSPLTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKT 203 Query: 217 DAVNRIQAIAKAIRFGYI 234 + +R+QA+ A + Sbjct: 204 GSRDRVQAVILAYETKLV 221 >gi|46190453|ref|ZP_00121483.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum DJO10A] Length = 64 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 2 DELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYEN 61 Query: 232 GYI 234 + Sbjct: 62 HLV 64 >gi|284034127|ref|YP_003384058.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813420|gb|ADB35259.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 971 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 10/118 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----------SSAARNLTE 176 + + + A + +A+ EL K + A LT Sbjct: 853 SEQAWSRLRLSDALRAAGRVADANEQAQLAAETARELGAKPLLEELGSAAEPAGAAALTA 912 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET L L +G T+ ++A +L +S TV+ ++ + KL +R +A A A R G + Sbjct: 913 RETEVLALLAEGRTNRQLARELYISEKTVSVHVSNILAKLGVRSRTEAAAVARRDGLL 970 >gi|291300074|ref|YP_003511352.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569294|gb|ADD42259.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 213 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 13/161 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNGYVIFTSE 137 + S L + + GY++ + Sbjct: 49 VDVMLTDLRMPAPSGAALIRLIAKRHPRVRVLVLTTYDTDADVLPAMEAGAVGYLLKDTP 108 Query: 138 FLMLANEVIIEAH---GACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 L V A V + L + + L+ RE L L G +++ Sbjct: 109 RQDLYRAVRSAADGETALSPSVAARLVDRLRSPGPARSSALSAREIEVLSLVAAGNSNKA 168 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L +S TV +L KL +R A+A G + Sbjct: 169 IAAALFISEATVKTHLLHIYGKLGVNDRAAAVAAGYDSGLL 209 >gi|116621801|ref|YP_823957.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224963|gb|ABJ83672.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L G +++EIA+ L ++ TV ++ +LD +R QA+ A++ G Sbjct: 162 ALSPREMDILRLIVRGLSNQEIADALNITRGTVKWHVNIILRRLDVNDRTQAVVVAVQRG 221 Query: 233 YI 234 + Sbjct: 222 IV 223 >gi|108798029|ref|YP_638226.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867124|ref|YP_937076.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433690|ref|YP_001069381.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108768448|gb|ABG07170.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693213|gb|ABL90286.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126233490|gb|ABN96890.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 219 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 7/123 (5%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLEL--FKKRSSA 170 + +R+G +S+ L+ E+ G + + L + A Sbjct: 95 LFQALRVGASGYLLKSISSDELVRQLELAHRGQTAIDPGMAARAVDTAARLQRDEFWPGA 154 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT+RE+ L G ++ IA KL + TV +L S KL +R A+A A+R Sbjct: 155 RQGLTQRESEILSFVVTGLSNRGIANKLVIGEETVKTHLRSIYRKLGVGDRAGAVATALR 214 Query: 231 FGY 233 G Sbjct: 215 EGI 217 >gi|42523311|ref|NP_968691.1| LuxR family transcriptional regulator [Bdellovibrio bacteriovorus HD100] gi|39575517|emb|CAE79684.1| putative transcriptional regulator, LuxR family [Bdellovibrio bacteriovorus HD100] Length = 129 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-R 230 + L+ RE +L G +++E+A +L ++ TV +L + K++ +R Q I + Sbjct: 9 KGLSNREAEVAELVSKGLSNKEVANQLFVTEKTVKFHLTNIYKKMNVKSRAQLIVWCLPH 68 Query: 231 FGYI 234 G++ Sbjct: 69 LGFV 72 >gi|320106955|ref|YP_004182545.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925476|gb|ADV82551.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 208 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE L+ G +++ +A+KL +S TV ++ S KL A +R A+ A++ Sbjct: 143 ADALSEREIQVLREVSAGSSNKSVADKLFISEDTVKGHMKSILAKLQANDRTHAVMIAVK 202 Query: 231 FGYI 234 G+I Sbjct: 203 RGFI 206 >gi|239945308|ref|ZP_04697245.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991767|ref|ZP_04712431.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448770|ref|ZP_06588160.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] gi|291351717|gb|EFE78621.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G + L + + A LT RE LQL Sbjct: 107 AGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQLV 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++ +I+++L LS TV ++L KL +R A+A A I Sbjct: 167 GEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 215 >gi|239944642|ref|ZP_04696579.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991106|ref|ZP_04711770.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448106|ref|ZP_06587496.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291351053|gb|EFE77957.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 9/116 (7%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 FP L + + +I E + + LT RE Sbjct: 109 TFPELLHAVRVVAGGHALLAPEITGRLIAEFAR---------QRVSAPPKRSIEGLTARE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ +IA++L ++ HTV ++ K+ +R QA+ A G + Sbjct: 160 AEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLV 215 >gi|196228675|ref|ZP_03127541.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226956|gb|EDY21460.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 217 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +QL +G +++E+A+ LG+SV TV + + KL + + AIR Sbjct: 154 RLTDREREIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKLKFKSFSDLVRYAIRNH 213 Query: 233 YI 234 I Sbjct: 214 II 215 >gi|149922133|ref|ZP_01910573.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149817070|gb|EDM76552.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 247 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 40/67 (59%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L+L DG ++ I E+LG+S HTV ++ + KLDA +R QA+ + Sbjct: 178 APENNLLTPREREVLELLADGLSNRNIGERLGISAHTVKFHVDALLDKLDARSRTQAVVQ 237 Query: 228 AIRFGYI 234 AIR G + Sbjct: 238 AIRRGLL 244 >gi|56477414|ref|YP_159003.1| transcriptional regulator NarL [Aromatoleum aromaticum EbN1] gi|56313457|emb|CAI08102.1| Nitrate/nitrite TWO-component response regulator NARL [Aromatoleum aromaticum EbN1] Length = 220 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 16/138 (11%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY--------- 154 + L + V + + E ++EA A Sbjct: 76 VRQADLDTRVVMVTVSDAAEDLVAALRAGADGYLLKDMEPEQMVEALQAAAAGRIVVSDA 135 Query: 155 --QVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ L K+ S LTE+E L+ G +++ IA +LG++ TV ++ Sbjct: 136 LTHLMAAALRQEKRPDSVTDAGLTEQEQRILERIAAGLSNKLIARELGIAEGTVKVHVKH 195 Query: 212 ATVKLDAVNRIQAIAKAI 229 KL+ +R++A A+ Sbjct: 196 VLRKLNFRSRVEAAVWAV 213 >gi|315091877|gb|EFT63853.1| putative nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL110PA4] Length = 210 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVAPRLMVRMRSPRTSLTAREFDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|307323931|ref|ZP_07603140.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890380|gb|EFN21357.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 39/109 (35%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S L+ERE L+ Sbjct: 132 AGATGYLLKAERPEELFAAIRNAASGRTALSAPVADRVLARMRSPRPGLSERERDILRQL 191 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A A + Sbjct: 192 ARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVATERRLL 240 >gi|326775192|ref|ZP_08234457.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326655525|gb|EGE40371.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 230 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177 GYV+ + L GA +I +FL AR +TER Sbjct: 112 AGAAGYVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNFLDRAKDGEDLPARAITER 171 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G++S+EIAE L +SV TV + + KL +R++ AIR G I Sbjct: 172 EEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 228 >gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 231 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L S LT RE S L L +G ++EIA +L SV V Y+ K +R Sbjct: 158 HLVTTPSPIKIELTPREQSVLDLVAEGLMNKEIASRLNTSVRNVEKYVSRLFSKTGTNSR 217 Query: 222 IQAIAKAIRFGY 233 + + A++ G Sbjct: 218 TELVRFALKHGL 229 >gi|126435625|ref|YP_001071316.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126235425|gb|ABN98825.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 218 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRS--SAARNLTE 176 GY++ ++ L+ V A G V+ ++ + ++ +A LTE Sbjct: 100 AGATGYLVKSASKAELSAAVRATADGRAVFTPGLAGLVLGEYRRIAQRPDTGDSAPTLTE 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 160 RETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216 >gi|15802746|ref|NP_288773.1| transcriptional regulator NarP [Escherichia coli O157:H7 EDL933] gi|15832336|ref|NP_311109.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. Sakai] gi|168749599|ref|ZP_02774621.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4113] gi|168754943|ref|ZP_02779950.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4401] gi|168764687|ref|ZP_02789694.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4501] gi|168767816|ref|ZP_02792823.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4486] gi|168773087|ref|ZP_02798094.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4196] gi|168780045|ref|ZP_02805052.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4076] gi|168789011|ref|ZP_02814018.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC869] gi|168802408|ref|ZP_02827415.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC508] gi|195935573|ref|ZP_03080955.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. EC4024] gi|208807826|ref|ZP_03250163.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4206] gi|208812712|ref|ZP_03254041.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4045] gi|208820974|ref|ZP_03261294.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4042] gi|209398167|ref|YP_002271605.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4115] gi|217326666|ref|ZP_03442749.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. TW14588] gi|254794092|ref|YP_003078929.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. TW14359] gi|261223349|ref|ZP_05937630.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O157:H7 str. FRIK2000] gi|261259101|ref|ZP_05951634.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O157:H7 str. FRIK966] gi|291283444|ref|YP_003500262.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7 str. CB9615] gi|12516525|gb|AAG57328.1|AE005452_1 nitrate/nitrite response regulator (sensor NarQ) [Escherichia coli O157:H7 str. EDL933] gi|13362551|dbj|BAB36505.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. Sakai] gi|187771336|gb|EDU35180.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4196] gi|188016073|gb|EDU54195.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4113] gi|189002090|gb|EDU71076.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4076] gi|189357613|gb|EDU76032.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4401] gi|189362901|gb|EDU81320.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4486] gi|189365348|gb|EDU83764.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4501] gi|189371341|gb|EDU89757.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC869] gi|189375588|gb|EDU94004.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC508] gi|208727627|gb|EDZ77228.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4206] gi|208733989|gb|EDZ82676.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4045] gi|208741097|gb|EDZ88779.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4042] gi|209159567|gb|ACI37000.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4115] gi|209765848|gb|ACI81236.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765850|gb|ACI81237.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765852|gb|ACI81238.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765854|gb|ACI81239.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765856|gb|ACI81240.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|217319033|gb|EEC27458.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. TW14588] gi|254593492|gb|ACT72853.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O157:H7 str. TW14359] gi|290763317|gb|ADD57278.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7 str. CB9615] gi|320192180|gb|EFW66825.1| Nitrate/nitrite response regulator protein [Escherichia coli O157:H7 str. EC1212] gi|320641261|gb|EFX10739.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. G5101] gi|320646534|gb|EFX15450.1| transcriptional regulator NarP [Escherichia coli O157:H- str. 493-89] gi|320651905|gb|EFX20280.1| transcriptional regulator NarP [Escherichia coli O157:H- str. H 2687] gi|320657630|gb|EFX25428.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663086|gb|EFX30399.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. USDA 5905] gi|320667986|gb|EFX34889.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. LSU-61] gi|326339547|gb|EGD63358.1| Nitrate/nitrite response regulator protein [Escherichia coli O157:H7 str. 1125] gi|326344008|gb|EGD67769.1| Nitrate/nitrite response regulator protein [Escherichia coli O157:H7 str. 1044] Length = 215 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 71 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SERVNQYLHEREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 191 NLLRKLNVRSRVAATIL 207 >gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 228 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 14/96 (14%) Query: 152 ACYQVITDFLELFK-------KRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEK 197 +++ + + L + K LT E GYT+++I+++ Sbjct: 121 RSHRIHAEIVRLLQNSGVEQVKIPPPTVTPESQPLPLTPAEERVFWEVIQGYTNKQISDR 180 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S TV A+L S KL NR Q + A+ GY Sbjct: 181 LFISPRTVQAHLSSIFSKLQLENRSQLVRFALEGGY 216 >gi|297623791|ref|YP_003705225.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164971|gb|ADI14682.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 503 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 EV+ + QV+ ++ R + + LTERE L G ++E IA +LGL Sbjct: 408 QEVMSDTAWFSTQVMERLAQIRAGRPKAAPSVALTERERQVLAQLAQGKSNEAIAAELGL 467 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + TV Y+ K+ +R +A+ A G Sbjct: 468 ARQTVRNYISVLYDKIGVHSRAEAVVWARERGM 500 >gi|223934665|ref|ZP_03626585.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896620|gb|EEF63061.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 11/151 (7%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNGYVIFTSEFLMLAN 143 ++S Q ++ + + G GYV+ +S L Sbjct: 59 DLRMPVKSGVQATLEIRNRFATACVLMLTAFDGDEDIHKALQAGAQGYVLKSSTGEKLIP 118 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + A G + L + S L+ RE L G ++EIA+ L ++ H Sbjct: 119 ALRAVAAGQRWIPKEVANRLALRNSF--EQLSPREVQVLSELARGLANKEIADVLNITEH 176 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T +L S KL +R +A+ A++ G I Sbjct: 177 TTKDHLKSILAKLRVADRTEAVTVALQRGII 207 >gi|160883554|ref|ZP_02064557.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483] gi|156110967|gb|EDO12712.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483] Length = 275 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ NLT RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 207 IMPSSLNLTNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIR 266 Query: 227 KAIRFGYI 234 G + Sbjct: 267 LGQETGLL 274 >gi|83643319|ref|YP_431754.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631362|gb|ABC27329.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 207 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 37/83 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + R ++ +LT RE S L+ +G +++ IAE+L +SV TV + Sbjct: 124 YISSGASAALFSQPQLRGESSASLTHREASVLKKVAEGKSNKAIAEELAISVRTVETHRQ 183 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL + + AI+ G Sbjct: 184 NIKAKLGLSSTAELTKYAIKHGL 206 >gi|146278542|ref|YP_001168701.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17025] gi|145556783|gb|ABP71396.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17025] Length = 203 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 21/214 (9%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L ++ A + I A L +Y D + D + Sbjct: 11 LSQLRRVAPAGYYMGLHIRFASPL-------VTLQSYREDWIEYYTEKGYLLYDPSIRWG 63 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 W + V G++ F Sbjct: 64 MVESGTRRWSDFADSDPRG-----VVAEAAQFGLRFGVSCS-WGAVSGRSIGSFARSDRE 117 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + +V L LT+ + L+ G+G A+KLG+ Sbjct: 118 FTDREVELVFELFQRVHELTL--------PPDELTQPQIDALRCIGNGDRHAAAAQKLGI 169 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S + A + A +L A +AI +A +G I Sbjct: 170 SESALKARIAGARQRLGARTTAEAIQRAKDYGLI 203 >gi|297589527|ref|ZP_06948168.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|283471613|emb|CAQ50824.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ST398] gi|297578038|gb|EFH96751.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298695655|gb|ADI98877.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|312437187|gb|ADQ76258.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|323439615|gb|EGA97334.1| two-component response regulator [Staphylococcus aureus O11] gi|323442719|gb|EGB00346.1| two-component response regulator [Staphylococcus aureus O46] Length = 200 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + Sbjct: 132 SDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 191 Query: 228 AIRFGYI 234 A++ + Sbjct: 192 ALKKKLL 198 >gi|49484607|ref|YP_041831.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82751986|ref|YP_417727.1| two-component response regulator [Staphylococcus aureus RF122] gi|257423874|ref|ZP_05600303.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257426557|ref|ZP_05602959.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429193|ref|ZP_05605580.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257431839|ref|ZP_05608202.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257434799|ref|ZP_05610850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|258425065|ref|ZP_05687936.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282902306|ref|ZP_06310199.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282906734|ref|ZP_06314582.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282909710|ref|ZP_06317519.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911956|ref|ZP_06319752.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282915251|ref|ZP_06323028.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282917742|ref|ZP_06325492.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282920975|ref|ZP_06328693.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282925881|ref|ZP_06333529.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|283767476|ref|ZP_06340391.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283959174|ref|ZP_06376615.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|293497647|ref|ZP_06665501.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|293511227|ref|ZP_06669923.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|293549835|ref|ZP_06672507.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|295428978|ref|ZP_06821600.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|81696432|sp|Q6GE42|NREC_STAAR RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123741052|sp|Q2YZ42|NREC_STAAB RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|49242736|emb|CAG41461.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82657517|emb|CAI81959.1| two-component response regulator [Staphylococcus aureus RF122] gi|257272892|gb|EEV04994.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257276188|gb|EEV07639.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257279674|gb|EEV10261.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257282718|gb|EEV12850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257285395|gb|EEV15511.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257844899|gb|EEV68942.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282312710|gb|EFB43114.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|282315390|gb|EFB45774.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282318027|gb|EFB48387.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282320972|gb|EFB51306.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282323652|gb|EFB53968.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326284|gb|EFB56588.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329633|gb|EFB59154.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282596765|gb|EFC01724.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283461355|gb|EFC08439.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283788766|gb|EFC27593.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290918882|gb|EFD95958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291096578|gb|EFE26836.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|291465853|gb|EFF08383.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|295126737|gb|EFG56381.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|302334020|gb|ADL24213.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|315194884|gb|EFU25272.1| two-component response regulator [Staphylococcus aureus subsp. aureus CGS00] Length = 217 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + Sbjct: 149 SDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 208 Query: 228 AIRFGYI 234 A++ + Sbjct: 209 ALKKKLL 215 >gi|256783882|ref|ZP_05522313.1| two-component regulator [Streptomyces lividans TK24] gi|289767766|ref|ZP_06527144.1| two-component system response regulator [Streptomyces lividans TK24] gi|289697965|gb|EFD65394.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 V E + LT RE L+L G ++ EIA L +S HTV ++ Sbjct: 133 LVADIVRRRREEAAADVTPQRLEALTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHV 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+QA+ A G + Sbjct: 193 SNVLGKLGLRDRVQAVICAYETGLV 217 >gi|261418694|ref|YP_003252376.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765509|ref|YP_004131010.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375151|gb|ACX77894.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110375|gb|ADU92867.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 550 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT RE L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA + Sbjct: 483 SEQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQ 542 Query: 231 F 231 Sbjct: 543 L 543 >gi|116254846|ref|YP_770682.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|19338425|emb|CAD19127.2| two-component response regulator [Rhizobium leguminosarum bv. viciae] gi|115259494|emb|CAK10632.1| two-component response transcriptional regulator of mctP [Rhizobium leguminosarum bv. viciae 3841] Length = 214 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 5/136 (3%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVIT 158 ++ + I+ V G +++ ++ A E + V Sbjct: 79 PQARVVM--LSMHDSREYISSSVMHGAAGYILKDVSTDEIVSAIETVAGGGTYFSSGVFD 136 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + ++ + LT RE L L G +++EIAE LG++ T + + KL Sbjct: 137 ALM--GERVEEGSDPLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGI 194 Query: 219 VNRIQAIAKAIRFGYI 234 I A+ G + Sbjct: 195 TTTAGLIRYALDHGIV 210 >gi|331696989|ref|YP_004333228.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951678|gb|AEA25375.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 237 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 5/104 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYT 190 E L + A + + L + LT RE L L +G + Sbjct: 121 REALRRVLDDRAAIDPAVQHHLLEALAGGRPEPVPVAPQRPAGLTAREAEVLTLVAEGLS 180 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA +L +S TV +++ K+DA +R QA+A A R G + Sbjct: 181 NAEIARRLVVSEGTVKSHMNHLLAKIDARDRAQAVAFAYRNGLV 224 >gi|323700520|ref|ZP_08112432.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. ND132] gi|323460452|gb|EGB16317.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans ND132] Length = 216 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 32/81 (39%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ R +L+ RE +L DG T +E A +L +S TV + + Sbjct: 134 AALLRQLSPERSGREDLFDHLSPRELEVFRLLADGLTVKEAAAELHISPKTVETHKYNLM 193 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ AIR G I Sbjct: 194 EKLEVGTIPDLTKLAIRHGLI 214 >gi|228477748|ref|ZP_04062377.1| DNA-binding response regulator [Streptococcus salivarius SK126] gi|228250637|gb|EEK09848.1| DNA-binding response regulator [Streptococcus salivarius SK126] Length = 200 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L++RE L + G T++EIAE L LS TV Y+ + KLDA NR Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ A ++ Sbjct: 187 TEAVRIAKEKDWL 199 >gi|83594559|ref|YP_428311.1| two component LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577473|gb|ABC24024.1| two component transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 224 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L+L G G +++EIA L LS TV ++ + L NR A+ A R G Sbjct: 162 RLTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLG 221 Query: 233 Y 233 Sbjct: 222 L 222 >gi|56418899|ref|YP_146217.1| hypothetical protein GK0364 [Geobacillus kaustophilus HTA426] gi|56378741|dbj|BAD74649.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 549 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 9/165 (5%) Query: 76 FLFHFNSGLLPIIWQSIQEETV--IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + ++ + V + + + P +G + G + Sbjct: 378 VHEGAMDVEMAVRYRDDVCRRYGCHGEKAKSEVPALLDVEGKSVMEVPFFVGDGRYGVLA 437 Query: 134 -FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAG 186 + + A + + + LT RE L+L Sbjct: 438 VHIKKGREAKEAEVYMTALAAIGAMMISGKAHGGNDGTVNIDMLSEQLTAREMDVLELLI 497 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G ++ EI+E+L +SVHTV ++ + K+ +R Q IA + Sbjct: 498 QGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 542 >gi|15614660|ref|NP_242963.1| two-component response regulator [Bacillus halodurans C-125] gi|10174716|dbj|BAB05816.1| two-component response regulator [Bacillus halodurans C-125] Length = 210 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ L+ + LT RE + L+ G+G ++E+AE+LGLSV TV Sbjct: 129 VAAKVMPVLLQHEEAI-PIDPTLTPREIAILKCIGEGLNNKEVAERLGLSVGTVKNQTSQ 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R Q AIR + Sbjct: 188 ILDKLALRDRTQLAIYAIRHRLV 210 >gi|88808256|ref|ZP_01123766.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] gi|88787244|gb|EAR18401.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] Length = 235 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 32/70 (45%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ RE G + IA LGLSV TV +++G+A KL A +R Q Sbjct: 162 PDLPPLVEELSPRELEVAAGVARGLKNNAIASLLGLSVETVKSHVGNAMDKLGARDRTQM 221 Query: 225 IAKAIRFGYI 234 A+ +G I Sbjct: 222 AVMALLYGLI 231 >gi|312140819|ref|YP_004008155.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890158|emb|CBH49476.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 224 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 3/123 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + +G + + + A Sbjct: 104 RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPPLDPE 160 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE+L +SV TV + + K NR A R Sbjct: 161 LDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHR 220 Query: 231 FGY 233 Sbjct: 221 RRI 223 >gi|297155229|gb|ADI04941.1| two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 181 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G+T+ EIAE+L L+ TV +++ K+ A +R+Q + A G Sbjct: 117 RLTEREREVLTGVATGWTNTEIAERLCLAESTVKSHVSRILTKIGARDRVQVVIFAYDVG 176 Query: 233 YI 234 + Sbjct: 177 LV 178 >gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 246 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 37/106 (34%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + +E + ++ + S +LT RE S L L Sbjct: 139 RRAATRQEAEDGTPDITALAGQIARIENMLKGKTGINLSPSPIKIDLTPREQSVLDLVAQ 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA +L SV V Y+ K +R + + A+ G Sbjct: 199 GLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 244 >gi|254485770|ref|ZP_05098975.1| two component transcriptional regulator, LuxR family [Roseobacter sp. GAI101] gi|214042639|gb|EEB83277.1| two component transcriptional regulator, LuxR family [Roseobacter sp. GAI101] Length = 204 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A L+ RE L+ +G ++EIA L +S TV ++ + K+ A NR Q Sbjct: 134 DTPTHPLAEKLSSRELQVLKGLTEGKANKEIARDLDISEPTVKLHMKTLYRKVGAANRTQ 193 Query: 224 AIAKAIRFGY 233 A A G Sbjct: 194 AALIAREAGL 203 >gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 232 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 40/99 (40%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 T+ + E+ E Q+ L +LT RE S L L +G ++EI Sbjct: 132 TATDSVKLEEIAQEIRELKQQLGQQQNTLITTPPPIKIDLTPREQSVLDLVAEGLMNKEI 191 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L SV V Y+ K +R + + A++ G Sbjct: 192 AARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230 >gi|53804396|ref|YP_113723.1| LuxR family transcriptional regulator [Methylococcus capsulatus str. Bath] gi|53758157|gb|AAU92448.1| transcriptional regulator, LuxR family [Methylococcus capsulatus str. Bath] Length = 255 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 64/225 (28%), Gaps = 11/225 (4%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICE--LHNYD---LDSGDIPNIL 68 L L I +A F ++ D ++ LH + + L Sbjct: 27 LDHAMASLCGIIGAQQACWFGAVRLDCRDDPIDGWRVCAIRYLHPHPERDAAYAEHRRRL 86 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIES-SGQLSVRLEGGLLPFA--GIAFPVRLG 125 D + E G+ L +A PV G Sbjct: 87 ERGDIDPSIVANLRHAGRFRVSIQHEIVPPGWYDGEFYRSLFKPFGIRDVCYMATPVNSG 146 Query: 126 FHKNGYVIFTSEFLML---ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 S L A ++E G + L L A++ LT E L Sbjct: 147 LESWFGFERVSPEAPLFGEAERALLERAGRALKWFHRQLALHHGLMIASQPLTPAERRLL 206 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G + EIAE+LGL+ +TV+ Y K R +A Sbjct: 207 SALLGGASEAEIAERLGLTPNTVHTYATRIYRKFGVKGRTGLVAL 251 >gi|332306797|ref|YP_004434648.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174126|gb|AEE23380.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 215 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K ++ LT RE L G +S+EIA L +S TV A+ + KL+ + Sbjct: 142 IDKPARDTSQKLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLA 201 Query: 223 QAIAKAIRFGYI 234 + I A+ G + Sbjct: 202 ELICYAVDHGLV 213 >gi|331699089|ref|YP_004335328.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953778|gb|AEA27475.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 227 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 21/181 (11%) Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D+ + L P + ++ R+ +A V V Sbjct: 49 VDEAVAAIRH-LRP-DVVLLDVHMPDGGGAEVLRRIRPECPDVVFLALSVSDAAEDVIAV 106 Query: 133 IFTSEFL----MLANEVIIEAHGACY--------QVITDFLELFKKRSSAARN------- 173 I ++ + +A + ++ L++F R AA Sbjct: 107 IRAGARGYVTKTISGRDLADAVRRVHGGDAVFSPRLAGFVLDVFSDRPGAAPPGDPELDL 166 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L GY +EIA +L +SV TV ++ S K NR + A Sbjct: 167 LTRRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRL 226 Query: 234 I 234 + Sbjct: 227 V 227 >gi|319648461|ref|ZP_08002677.1| YvfU protein [Bacillus sp. BT1B_CT2] gi|317389540|gb|EFV70351.1| YvfU protein [Bacillus sp. BT1B_CT2] Length = 197 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 144 EVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + +A C + F EL LTERE L+LA G T++EI+E+L LS Sbjct: 106 DDLADAIRKCTEGKRTFSPELTFNAVRETNPLTEREQDILRLAYIGKTTKEISEELFLSS 165 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ KLDA NR++A A G+I Sbjct: 166 GTVRNYISEIMQKLDAKNRMEAARIAEGKGWI 197 >gi|269836233|ref|YP_003318461.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785496|gb|ACZ37639.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 223 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ ++ L K + + LT+RE + L+L +GY + +IAE+L L+ TV L Sbjct: 132 ALAPALMREYQRLLTKTPTNTRQQLTQRELTLLRLLANGYNNRQIAEQLQLAESTVKNNL 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + K+ +R QA+ AI G + Sbjct: 192 SALFQKIGVRDRTQAVLFAISQGLV 216 >gi|228919844|ref|ZP_04083201.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839798|gb|EEM85082.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 207 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLTE+E L+ G ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 144 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 203 Query: 233 YI 234 I Sbjct: 204 LI 205 >gi|229028798|ref|ZP_04184901.1| Sensory transduction protein ydfI [Bacillus cereus AH1271] gi|228732508|gb|EEL83387.1| Sensory transduction protein ydfI [Bacillus cereus AH1271] Length = 207 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLTE+E L+ G ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 144 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 203 Query: 233 YI 234 I Sbjct: 204 LI 205 >gi|229154684|ref|ZP_04282799.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342] gi|228628632|gb|EEK85344.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342] Length = 207 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLTE+E L+ G ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 144 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 203 Query: 233 YI 234 I Sbjct: 204 LI 205 >gi|118476625|ref|YP_893776.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415850|gb|ABK84269.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 219 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLTE+E L+ G ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 156 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 215 Query: 233 YI 234 I Sbjct: 216 LI 217 >gi|116749099|ref|YP_845786.1| two component LuxR family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698163|gb|ABK17351.1| two component transcriptional regulator, LuxR family [Syntrophobacter fumaroxidans MPOB] Length = 218 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +VI +LE K K S++ LT+RE L++ +GY +++IA+ L +S TV + Sbjct: 132 ISEKVIEGYLEGRKTIKSSTSWDTLTQREKEILKMIAEGYKNKDIADYLCISAKTVEKHR 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KLD + A A+ G I Sbjct: 192 ANLMKKLDLHSASSLTAFAMEKGLI 216 >gi|322516517|ref|ZP_08069435.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322124986|gb|EFX96400.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 200 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L++RE L + G T++EIAE L LS TV Y+ + KL+A NR Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLNAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ A ++ Sbjct: 187 TEAVRIAKEKDWL 199 >gi|261338216|ref|ZP_05966100.1| two-component system response regulator [Bifidobacterium gallicum DSM 20093] gi|270276862|gb|EFA22716.1| two-component system response regulator [Bifidobacterium gallicum DSM 20093] Length = 230 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 23/142 (16%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHG-------ACYQVITDFLEL 163 A +A V G VI + A +++ H ++ L Sbjct: 89 AFLALSVSDSAQDVGAVIRAGARGYVTKTINATDLVAAIHQVSEGYAVFSPKLAGFVLSA 148 Query: 164 FKKRSSAA-----------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 F+ +A L+ RE ++L GYT E+A +L +SV TV ++ + Sbjct: 149 FQGAPAAGADNDVNADEELDRLSSREQEVMRLIARGYTYREVAAELFISVKTVETHMSAV 208 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL NR + A I Sbjct: 209 LRKLQLSNRSELTRWATVRRII 230 >gi|209546605|ref|YP_002278523.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537849|gb|ACI57783.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166 + I+ V G +++ ++ A E + + V + ++ Sbjct: 85 MLSMHDSREYISSSVMHGAAGYVLKDVSTDEIVAAIETVADGGTYFSSGVFDALM--GER 142 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L L G ++ EIAE LG+S T + + KL I Sbjct: 143 AEEGSDPLTPREHDILGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLIR 202 Query: 227 KAIRFGY 233 A+ G Sbjct: 203 YALDHGI 209 >gi|317492389|ref|ZP_07950818.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919728|gb|EFV41058.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 215 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LT+RE L G ++ EIA+ L +S +TV +L + K+ NR QA++ Sbjct: 149 SPEATGLTQREKEILNKLRAGASNTEIAKLLFISENTVKTHLYNLFKKISVKNRTQAVSW 208 Query: 228 A 228 A Sbjct: 209 A 209 >gi|317121636|ref|YP_004101639.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591616|gb|ADU50912.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 222 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AR L++RE L G ++ ++A +L +S TV +L KL +R QA+ A+ Sbjct: 151 RARLLSQRELEVLSRIARGKSTAQVARELYISPKTVRNHLSHIMQKLGVRDRTQAVLFAL 210 Query: 230 RFGYI 234 R G I Sbjct: 211 RVGLI 215 >gi|311743852|ref|ZP_07717658.1| two component system response regulator [Aeromicrobium marinum DSM 15272] gi|311312982|gb|EFQ82893.1| two component system response regulator [Aeromicrobium marinum DSM 15272] Length = 218 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 157 ITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + L ++ + A LTERE L G T+ EIA++L +++ TV ++ + Sbjct: 136 LLTTLAGLERATPPAQPIEPLTEREEEVLLTVARGRTNAEIADELHITLSTVKTHVAALM 195 Query: 214 VKLDAVNRIQAIAKAIRFG 232 KL A NR++ A G Sbjct: 196 NKLGARNRVEVAMWAYETG 214 >gi|254820486|ref|ZP_05225487.1| NarL_1 [Mycobacterium intracellulare ATCC 13950] Length = 217 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + L + G+V+ S Sbjct: 57 DVALLDYRMPGMDGAQVAAAVRTQGLATRVLLISAHDESAIVYQALQQGAAGFVLKDSTR 116 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ +A L+ RE L G + I Sbjct: 117 GEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPSAPVLSAREREVLNRIARGQSIPTI 176 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 177 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 216 >gi|153941243|ref|YP_001390894.1| LuxR family transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152937139|gb|ABS42637.1| transcriptional regulator, LuxR family [Clostridium botulinum F str. Langeland] Length = 865 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 41/72 (56%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 I + +++ + LTERE +++ +G ++++I ++L +S+ TV ++ + K Sbjct: 785 FIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNISLATVKTHMINIYSK 844 Query: 216 LDAVNRIQAIAK 227 L NR+QA+ K Sbjct: 845 LQVSNRVQAVEK 856 >gi|149926855|ref|ZP_01915114.1| two-component response regulator [Limnobacter sp. MED105] gi|149824407|gb|EDM83625.1| two-component response regulator [Limnobacter sp. MED105] Length = 205 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +I H + +L ++ + LT RE L+ G +++IA+ L +S+ T Sbjct: 112 DLIHQHMRHAHELAQTAKLDEQINKLYSKLTTRELQVLERIVSGRLNKQIADDLNISIKT 171 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIR 230 V A+ + KL + A+R Sbjct: 172 VEAHRANIMDKLQVTTVADLLKIALR 197 >gi|153948784|ref|YP_001400250.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 31758] gi|152960279|gb|ABS47740.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 31758] Length = 209 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166 I V +I E+++E + + +L + Sbjct: 82 IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 141 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + LTERE LQ G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 142 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 201 Query: 227 KAIRF 231 + Sbjct: 202 MYLEN 206 >gi|311064838|ref|YP_003971564.1| two-component system response regulator [Bifidobacterium bifidum PRL2010] gi|313140925|ref|ZP_07803118.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|310867158|gb|ADP36527.1| Two-component system response regulator [Bifidobacterium bifidum PRL2010] gi|313133435|gb|EFR51052.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 238 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R L+ RE ++L GYT +E+A +L +S+ TV ++ + KL NR + Sbjct: 168 ARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRTE 227 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 228 LTRWAADRRIV 238 >gi|298247701|ref|ZP_06971506.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550360|gb|EFH84226.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 231 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEI 194 A ++ +V K + + LTERE LQ G S+EI Sbjct: 124 AAARGEMLLQPEMLARVFALTSSQAKDAAPSFGNVEGMELTEREREILQGVARGERSKEI 183 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +LG+S+ TV ++L S KL +R A+A AI G + Sbjct: 184 AVRLGISIRTVGSHLASIYTKLGVDSRASAVALAIERGLL 223 >gi|288936970|ref|YP_003441029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Klebsiella variicola At-22] gi|288891679|gb|ADC59997.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Klebsiella variicola At-22] Length = 921 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A + D L+ERE LQL +G ++EIA L +S TV ++ Sbjct: 837 WADKRAPADGTPFNSGSPDIHGELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIK 896 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R QA+++A+ + Sbjct: 897 NIYAKLKVNSRTQAMSRALEMKLL 920 >gi|269216845|ref|ZP_06160699.1| putative HTH-type transcriptional regulator MalT [Slackia exigua ATCC 700122] gi|269129652|gb|EEZ60736.1| putative HTH-type transcriptional regulator MalT [Slackia exigua ATCC 700122] Length = 787 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 +E + + E + + + S LT+ E L L ++ EI Sbjct: 689 AEEMDVDEEQLARLVKGARAQALWYPDFMSPPSGLTEPLTKTEIQVLHLICQDKSNVEIG 748 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LG+ + TV ++ KL R+QA +A R + Sbjct: 749 ELLGIKLSTVKTHVSHILAKLGVSRRVQAAREARRLHLV 787 >gi|219667253|ref|YP_002457688.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537513|gb|ACL19252.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 217 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 2/105 (1%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189 + ++ + E+ I A V + + K S + L+ERE L+ G+ Sbjct: 113 ELLSAIRTVARGEMFIYPTMAAEFVYRHLVSPREPEKESKKLKQLSERELEVLRNLALGH 172 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+++IA+ L +SV TV Y KL+ R + + A+ G I Sbjct: 173 TNQDIADLLHVSVKTVETYKARVMEKLEMHKRAELVRYAMENGII 217 >gi|227355895|ref|ZP_03840287.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906] gi|227163883|gb|EEI48785.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906] Length = 201 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 12/144 (8%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + SG +R + + + + + L E ++ Sbjct: 49 MDLHLQGRSGIDIIRSLRRCGLTSYVLVLSISDSRNDVYAALDAGANGYLLKECELDMLL 108 Query: 152 ACYQV-----------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + +++L + S LT+RE LQ G +++IAE L + Sbjct: 109 LSLRKAVVGRPVYSEKVWQYIQLRQNYSDPLSALTKRELDVLQEVAVGMKNKQIAENLFI 168 Query: 201 SVHTVNAYLGSATVKLDAVNRIQA 224 S TV ++ + KL +R+ A Sbjct: 169 SEETVKVHIRNILKKLQVTSRLAA 192 >gi|297191756|ref|ZP_06909154.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151051|gb|EDY65636.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 231 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA---ARN 173 L +G+++ L + V + A G ++I ++ + + Sbjct: 90 LHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLIEEYTRAVPRVPQPDGRLES 149 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 150 LTTRERETLLLLGRGLSNAEIAAELVVSEHTVKTHVGNVLAKLALRDRIQAVICAYESGL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|270489958|ref|ZP_06207032.1| putative nitrate/nitrite response regulator protein NarL [Yersinia pestis KIM D27] gi|270338462|gb|EFA49239.1| putative nitrate/nitrite response regulator protein NarL [Yersinia pestis KIM D27] Length = 240 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166 I V +I E+++E + + +L + Sbjct: 82 IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 141 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + LTERE LQ G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 142 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 201 Query: 227 KAIRF 231 + Sbjct: 202 MYLEN 206 >gi|254501452|ref|ZP_05113603.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222437523|gb|EEE44202.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 236 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 13/229 (5%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPN 66 ++++ + L R+ A + + + L P R + D Sbjct: 17 ISEANAAHHVLDILESNLRRMGA----THILITGLPMPNRPIDNLVQRFRWPDQRNDGIE 72 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLG 125 + D L IW I + L + I PV Sbjct: 73 STSLSANDSALMLGLGSNRARIWT-------ITAGDMEHSDLMASAGEGSQIVVVPVTEL 125 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + +V + L ++ + I+ EL L+ RE L+L Sbjct: 126 YPFQAFVFASGPALQVSKYDLSNLEALSAAAISRLRELGVVSGQRPGALSTRERKVLELT 185 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA+ L +S TV+A+L +A+VKL+A N+ + +A+R+G I Sbjct: 186 AYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 234 >gi|196233056|ref|ZP_03131904.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196222863|gb|EDY17385.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 11/151 (7%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 + + L + V G + ++ +E Sbjct: 57 DFRLPGADGAESTAHLRTEFPDARVVVLSVFEGEEDIWRAVEAGAMGYVSKSAEVEEVLE 116 Query: 153 CYQVIT---------DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + + +L +R+ LT RE L G +++EIA L +S Sbjct: 117 AIRCVVGGETYFPAPIASKLASRRT--RDALTPREHQVLHHIVAGLSNKEIAAALHMSEA 174 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + KL +R QA A++ G I Sbjct: 175 TVKLHISNTLAKLHVADRTQAAIVAVQRGII 205 >gi|166030393|ref|ZP_02233222.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC 27755] gi|166029751|gb|EDR48508.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC 27755] Length = 208 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + TERE L+L G ++ IAEKL +S TV ++ K +R + + Sbjct: 139 MATSHEFTEREMEVLRLMTTGASNAAIAEKLVISESTVKNHIHRMLEKTGCESRTELAIE 198 Query: 228 AIRFGY 233 A G Sbjct: 199 ARISGI 204 >gi|313888654|ref|ZP_07822319.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845383|gb|EFR32779.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 195 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L G T +EIA+KL +S T+ +L + KL A N I+A A+ Sbjct: 129 EPLTKREEEILIEVLSGLTKKEIADKLYISERTLYNHLANIYAKLGAKNAIEAYKIALEL 188 Query: 232 GYI 234 GYI Sbjct: 189 GYI 191 >gi|290509972|ref|ZP_06549342.1| LuxR family transcriptional regulator, maltose regulon positive regulatory protein [Klebsiella sp. 1_1_55] gi|289776688|gb|EFD84686.1| LuxR family transcriptional regulator, maltose regulon positive regulatory protein [Klebsiella sp. 1_1_55] Length = 921 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A + D L+ERE LQL +G ++EIA L +S TV ++ Sbjct: 837 WAGKRAPADGTPFNSGSPDIHGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIK 896 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R QA+++A+ + Sbjct: 897 NIYAKLKVNSRTQAMSRALEMKLL 920 >gi|227327331|ref|ZP_03831355.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 224 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 19/178 (10%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108 + + NY + + + D + + + P W ++ VI S + S L Sbjct: 44 VVIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNL 100 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIE-----AHGACYQVITDFLE 162 G F + + + E E I+E V Sbjct: 101 SKEYDIVNGYTFVLHDNNNNLAALSIMFEEHAPTDMENIVEENKDKLQMLLIAVHEKITT 160 Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L ++ ++RE L A G T EIA L + + TV ++G+ Sbjct: 161 LYKEMTQSPQSRKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNV 218 >gi|261364979|ref|ZP_05977862.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] gi|288566780|gb|EFC88340.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] Length = 218 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + S + + + V + + A LT RE L G+++ Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRELEILGYLAAGHSN 170 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + IA L L+ TV ++ + KLD +R+QA A++ Sbjct: 171 KVIARHLELAESTVKVHVQNLLRKLDLSSRVQAAVYAVQH 210 >gi|254974814|ref|ZP_05271286.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092202|ref|ZP_05321680.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313941|ref|ZP_05355524.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255516621|ref|ZP_05384297.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255649721|ref|ZP_05396623.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|306519831|ref|ZP_07406178.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 214 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 43/83 (51%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ + +K S NLTE+E S ++L +G ++EI+++L LS T+ + + Sbjct: 131 VAEKIMYPQKTIEQKHISDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITN 190 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R Q + A + + Sbjct: 191 ILGKLELRDRTQLVIFAFKNKIV 213 >gi|223940658|ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223890670|gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAAR 172 + +R G + L LA + + +VI D+L + S Sbjct: 92 VLQTLRAGAAGYLLKDAATAELELAIQAVSRGDTYLSPAISKRVIEDYLGRINGQKSPME 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ LQL +G +++E+A L LSV TV + +L + + A+R G Sbjct: 152 QLTPRQREILQLIAEGKSTKEMAFLLNLSVKTVETHRTQLMDRLGIHDVPGLVRYAMRMG 211 Query: 233 YI 234 I Sbjct: 212 LI 213 >gi|260682876|ref|YP_003214161.1| two-component response regulator [Clostridium difficile CD196] gi|260686474|ref|YP_003217607.1| two-component response regulator [Clostridium difficile R20291] gi|260209039|emb|CBA62150.1| two-component response regulator [Clostridium difficile CD196] gi|260212490|emb|CBE03410.1| two-component response regulator [Clostridium difficile R20291] Length = 217 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 43/83 (51%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ + +K S NLTE+E S ++L +G ++EI+++L LS T+ + + Sbjct: 134 VAEKIMYPQKTIEQKHISDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITN 193 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R Q + A + + Sbjct: 194 ILGKLELRDRTQLVIFAFKNKIV 216 >gi|284045613|ref|YP_003395953.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949834|gb|ADB52578.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 208 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L+ERE L L G T+ EIAE+L LS HTV + + KL A NR +A+ +A Sbjct: 143 PSTLLSEREQEVLTLIAGGSTNREIAEELYLSPHTVKEHTSALYRKLKARNRAEAVQRAQ 202 Query: 230 RFGYI 234 R G + Sbjct: 203 RIGLL 207 >gi|57234766|ref|YP_181176.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225214|gb|AAW40271.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 232 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQLA G ++ EIA+KL LS+ TV A+L + K+ R +AI K R G Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLELSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 Query: 233 YI 234 Y+ Sbjct: 214 YV 215 >gi|297193099|ref|ZP_06910497.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151643|gb|EFH31285.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A + A ++IT+F +L + AA LTERET L Sbjct: 106 DASARQLADGVRVVAAGEALLAPTVTRRLITEFSKLSETPRPAAMTQVADLTERETEVLV 165 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA L ++ T+ ++ VKL +R QA A + Sbjct: 166 LIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 216 >gi|295085346|emb|CBK66869.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacteroides xylanisolvens XB1A] Length = 245 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + ++ + L L + NLT RE L+L G S+EIA+KL +S+HTVN + Sbjct: 164 LNLKNGEIFSPSLSLM-----PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIH 218 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL N I+AI G + Sbjct: 219 RQNLLRKLGVQNSIEAIRLGQESGLL 244 >gi|84685343|ref|ZP_01013241.1| DNA-binding response regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666500|gb|EAQ12972.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 203 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 45/107 (42%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G++ T L N V A G Y + + + A L ERE L+ Sbjct: 96 GAAGFLPKTLSAKSLVNAVRFMAMGEQYVPVDFMTAKEEAKHPLAEKLAEREMQVLKGLT 155 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G +++EIA L L+ T+ YL + K+D NR QA A G Sbjct: 156 EGKSNKEIARDLDLTEPTIKLYLKTLYRKIDVNNRTQAALVAREAGL 202 >gi|311278134|ref|YP_003940365.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308747329|gb|ADO47081.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 217 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 V+ + ++ S A LTERE L G T+ +IA L +S +TV +L + Sbjct: 137 VMHPAMYAAEQSSGEAENIPLTERECEILNELRCGATNMDIARALFISENTVRTHLYNVF 196 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL NR QA++ A Sbjct: 197 RKLSVKNRTQAVSWANEN 214 >gi|260598854|ref|YP_003211425.1| transcriptional regulator NarP [Cronobacter turicensis z3032] gi|260218031|emb|CBA32732.1| Nitrate/nitrite response regulator protein narP [Cronobacter turicensis z3032] Length = 210 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 14/134 (10%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY------------- 154 L + I V +I L + EA Sbjct: 70 LRRDGVSARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEALLEAIRDGAAGAGVFSEQ 129 Query: 155 -QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 Q E ++R++ LT RE LQ G ++++IA L +S TV ++ + Sbjct: 130 VQAYLLTREPEEQRNAPFALLTGRELDVLQEVARGLSNKQIAATLHISEETVKVHIRNLL 189 Query: 214 VKLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 190 RKLNVRSRVAATVL 203 >gi|229010418|ref|ZP_04167622.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048] gi|229165953|ref|ZP_04293718.1| Sensory transduction protein ydfI [Bacillus cereus AH621] gi|228617506|gb|EEK74566.1| Sensory transduction protein ydfI [Bacillus cereus AH621] gi|228750838|gb|EEM00660.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048] Length = 161 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A NLT +E L+ GY ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 95 AENNLTVKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 154 Query: 230 RFGYI 234 I Sbjct: 155 ERKLI 159 >gi|182435647|ref|YP_001823366.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464163|dbj|BAG18683.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 222 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 9/116 (7%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 FP L + + +I E + + LT RE Sbjct: 109 TFPELLHAVRVVAGGHALLAPEITGRLIAEFTR---------QRVSAPPPRSVDGLTARE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ +IA++L ++ HTV ++ K+ +R QA+ A G + Sbjct: 160 VEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLV 215 >gi|88196315|ref|YP_501137.1| hypothetical protein SAOUHSC_02675 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|269204023|ref|YP_003283292.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|87203873|gb|ABD31683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|262076313|gb|ACY12286.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|269941974|emb|CBI50386.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus TW20] gi|302752262|gb|ADL66439.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312830737|emb|CBX35579.1| transcriptional regulatory protein degU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329315077|gb|AEB89490.1| Oxygen regulatory protein nreC [Staphylococcus aureus subsp. aureus T0131] Length = 200 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + Sbjct: 132 TDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 191 Query: 228 AIRFGYI 234 A++ + Sbjct: 192 ALKKKLL 198 >gi|113460191|ref|YP_718248.1| nitrate/nitrite response regulator protein [Haemophilus somnus 129PT] gi|170718227|ref|YP_001785249.1| LuxR family transcriptional regulator [Haemophilus somnus 2336] gi|112822234|gb|ABI24323.1| nitrate/nitrite response regulator protein [Haemophilus somnus 129PT] gi|168826356|gb|ACA31727.1| two component transcriptional regulator, LuxR family [Haemophilus somnus 2336] Length = 209 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V + +I + ++ Q Sbjct: 72 LRTEGIDARILILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQIKRVTQGEVILSES 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + + +LT+RE + L L G +++IA +L +S TV ++ + KL Sbjct: 132 IKNLLLERQHKDDPIYSLTDREMNVLALIATGLANKQIAGQLFISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A + Sbjct: 192 NVHSRVAATVLYFQH 206 >gi|15925381|ref|NP_372915.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|15927969|ref|NP_375502.1| hypothetical protein SA2179 [Staphylococcus aureus subsp. aureus N315] gi|21284042|ref|NP_647130.1| hypothetical protein MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49487173|ref|YP_044394.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650934|ref|YP_187192.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87162341|ref|YP_494972.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|148268828|ref|YP_001247771.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394900|ref|YP_001317575.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151222503|ref|YP_001333325.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980706|ref|YP_001442965.1| hypothetical protein SAHV_2375 [Staphylococcus aureus subsp. aureus Mu3] gi|161510583|ref|YP_001576242.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141331|ref|ZP_03565824.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314728|ref|ZP_04837941.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730063|ref|ZP_04864228.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734193|ref|ZP_04868358.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255007165|ref|ZP_05145766.2| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794731|ref|ZP_05643710.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407411|ref|ZP_05680554.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258422261|ref|ZP_05685173.1| response regulator receiver [Staphylococcus aureus A9719] gi|258439653|ref|ZP_05690399.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258442790|ref|ZP_05691350.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446510|ref|ZP_05694665.1| response regulator receiver [Staphylococcus aureus A6300] gi|258450373|ref|ZP_05698465.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|258451304|ref|ZP_05699337.1| transcriptional regulator [Staphylococcus aureus A5948] gi|258455251|ref|ZP_05703211.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|262048801|ref|ZP_06021682.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|262051545|ref|ZP_06023766.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|282893837|ref|ZP_06302069.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|282920376|ref|ZP_06328099.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282928424|ref|ZP_06336025.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|284025411|ref|ZP_06379809.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848934|ref|ZP_06789679.1| two-component system [Staphylococcus aureus A9754] gi|295405079|ref|ZP_06814892.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296276000|ref|ZP_06858507.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297209789|ref|ZP_06926185.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244136|ref|ZP_06928026.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300910801|ref|ZP_07128251.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379589|ref|ZP_07362322.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81693835|sp|Q5HDG5|NREC_STAAC RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81696270|sp|Q6G6T0|NREC_STAAS RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81704173|sp|Q7A029|NREC_STAAW RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81705142|sp|Q7A3U5|NREC_STAAN RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81855884|sp|Q99RN8|NREC_STAAM RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123735950|sp|Q2FEA6|NREC_STAA3 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829240|sp|A7X623|NREC_STAA1 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829241|sp|A6U4C0|NREC_STAA2 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829243|sp|A5IVH2|NREC_STAA9 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829244|sp|A6QJN1|NREC_STAAE RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829245|sp|A8Z580|NREC_STAAT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829309|sp|Q2FVM7|NREC_STAA8 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|13702340|dbj|BAB43481.1| SA2179 [Staphylococcus aureus subsp. aureus N315] gi|14248165|dbj|BAB58553.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|21205485|dbj|BAB96178.1| MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49245616|emb|CAG44095.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57285120|gb|AAW37214.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87128315|gb|ABD22829.1| transcriptional regulator, DegU family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|147741897|gb|ABQ50195.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149947352|gb|ABR53288.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150375303|dbj|BAF68563.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722841|dbj|BAF79258.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369392|gb|ABX30363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726276|gb|EES95005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727888|gb|EES96617.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788703|gb|EEV27043.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840923|gb|EEV65374.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257841692|gb|EEV66129.1| response regulator receiver [Staphylococcus aureus A9719] gi|257847429|gb|EEV71431.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257851911|gb|EEV75845.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854578|gb|EEV77526.1| response regulator receiver [Staphylococcus aureus A6300] gi|257856465|gb|EEV79374.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|257861096|gb|EEV83911.1| transcriptional regulator [Staphylococcus aureus A5948] gi|257862462|gb|EEV85230.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|259160529|gb|EEW45552.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|259163059|gb|EEW47620.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|282589819|gb|EFB94903.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|282594322|gb|EFB99308.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282763895|gb|EFC04023.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|285818052|gb|ADC38539.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|294824313|gb|EFG40737.1| two-component system [Staphylococcus aureus A9754] gi|294970024|gb|EFG46042.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296885462|gb|EFH24399.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178914|gb|EFH38159.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300887781|gb|EFK82976.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341765|gb|EFM07671.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315128595|gb|EFT84599.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315197413|gb|EFU27750.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139097|gb|EFW30979.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142526|gb|EFW34335.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329723454|gb|EGG59983.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21172] gi|329726678|gb|EGG63139.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21189] gi|329730103|gb|EGG66493.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21193] Length = 217 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + Sbjct: 149 TDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 208 Query: 228 AIRFGYI 234 A++ + Sbjct: 209 ALKKKLL 215 >gi|291085111|ref|ZP_06352103.2| nitrate/nitrite response regulator protein NarL [Citrobacter youngae ATCC 29220] gi|291072010|gb|EFE10119.1| nitrate/nitrite response regulator protein NarL [Citrobacter youngae ATCC 29220] Length = 225 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG--------A 152 L + I V +I EV++EA Sbjct: 81 LNALRRDGVTAQIIILTVSDAASDVYALIDAGADGYLLKDSDPEVLLEAIRSGAKGGKAF 140 Query: 153 CYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V E LF + LTERE L G ++++IA L +S TV ++ Sbjct: 141 STRVSEYLRERDLFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 201 NLLRKLNVRSRVAATIL 217 >gi|289768636|ref|ZP_06528014.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698835|gb|EFD66264.1| two-component system response regulator [Streptomyces lividans TK24] Length = 227 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 43/121 (35%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + + V L + + +++ Sbjct: 102 LHAGARGYLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRRLLEWLSESEPRPTGPPEPPDG 161 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L L +G T+ +IA +L +S TV ++ + K +R QA+ A G Sbjct: 162 LTTRETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGL 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|283457818|ref|YP_003362412.1| response regulator [Rothia mucilaginosa DY-18] gi|283133827|dbj|BAI64592.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Rothia mucilaginosa DY-18] Length = 275 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L G ++ EI +L LS TV ++ KL A +R+QA+ A Sbjct: 212 EQLSPREFEVLGLIARGLSNAEITRELVLSEATVKTHVSHVLAKLGARDRVQAVIMAYEA 271 Query: 232 GY 233 G Sbjct: 272 GI 273 >gi|184153602|ref|YP_001841943.1| two component response regulator [Lactobacillus reuteri JCM 1112] gi|227364675|ref|ZP_03848730.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325682211|ref|ZP_08161728.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|183224946|dbj|BAG25463.1| two component response regulator [Lactobacillus reuteri JCM 1112] gi|227070285|gb|EEI08653.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324978050|gb|EGC15000.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 217 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L GY+++EI++K+ +S TV A+ + + KL R++ + AI Sbjct: 154 GLSKREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHH 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|194466362|ref|ZP_03072349.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri 100-23] gi|194453398|gb|EDX42295.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri 100-23] Length = 217 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L GY+++EI++K+ +S TV A+ + + KL R++ + AI Sbjct: 154 GLSKREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHH 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|302525544|ref|ZP_07277886.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434439|gb|EFL06255.1| two-component system response regulator [Streptomyces sp. AA4] Length = 222 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA----ARNLTERE 178 G++ ++ +A + A G ++ + R+ LT RE Sbjct: 106 AGARGFLTKDTDAEAIARALRSAAAGQSTVDGELQRRLVAAATSRAPVRTKELEGLTARE 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++ EIA L +S TV ++ K +R QA+A A R G Sbjct: 166 VEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFSKAGLRDRAQAVAFAYRAGI 220 >gi|144898194|emb|CAM75058.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ + L+ + +LT RE L+L G + EIA+ L +++ TV + Sbjct: 132 ELVREHLDGGEANVP---SLTAREMEVLRLIAQGLKNREIADTLSIAIKTVETHRTKIMQ 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD N + AIR G I Sbjct: 189 KLDLHNSAELATYAIRRGLI 208 >gi|123965417|ref|YP_001010498.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9515] gi|123199783|gb|ABM71391.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9515] Length = 92 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L DG T++EIA KL +S TV+ ++ + K + NR+ + A+ G Sbjct: 15 GLSSREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 74 Query: 233 YIC 235 IC Sbjct: 75 KIC 77 >gi|220916020|ref|YP_002491324.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953874|gb|ACL64258.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 208 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Query: 156 VITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + L R+ AA LT RE L L +G ++ IA +LG+S HT ++ + Sbjct: 125 ALDPELAATLLRAPAAEAGGPLTPREREVLALVAEGLGNKAIAGRLGISEHTAKFHVNAI 184 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL A +R +AI +A R G + Sbjct: 185 LGKLGAGSRAEAIVRAARLGLV 206 >gi|145599420|ref|YP_001163496.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides F] gi|145211116|gb|ABP40523.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides F] Length = 209 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166 I V +I E+++E + + +L + Sbjct: 82 IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 141 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + LTERE LQ G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 142 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 201 Query: 227 KAIRF 231 + Sbjct: 202 MYLEN 206 >gi|117919601|ref|YP_868793.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117611933|gb|ABK47387.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 225 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H V+ + L+ERE L G++++EIA + L+ TV Sbjct: 139 HLIEPSVLEQMQQSSATAQSGPTHDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKN 198 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KLD +R QA+ K ++ I Sbjct: 199 HVSTILAKLDCRDRTQAVLKGLQLSLI 225 >gi|315222040|ref|ZP_07863951.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189006|gb|EFU22710.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 199 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+ +E LQ A G +S+EIA+KL LS TV Y+ S KL A NR Sbjct: 127 ELMEVMMTSKNPLSNQEILVLQAAARGLSSKEIAQKLYLSNGTVRNYMSSILTKLAAENR 186 Query: 222 IQAIAKAIRFGYI 234 ++A+ A G+I Sbjct: 187 LEAVRIAQENGWI 199 >gi|163740011|ref|ZP_02147416.1| two component transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] gi|163743180|ref|ZP_02150562.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161383597|gb|EDQ07984.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161386756|gb|EDQ11120.1| two component transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] Length = 204 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E A L+ RE L G +++EIA +L L T+ ++ + KL+A NR Sbjct: 132 EAEAPAHPLADKLSPREIEVLNGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLEAKNR 191 Query: 222 IQAIAKAIRFGY 233 QA A G Sbjct: 192 TQAALTAKEAGL 203 >gi|99080717|ref|YP_612871.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99036997|gb|ABF63609.1| two component transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 233 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + ++ LT RE + L G +++E+A+ L +SV TV + + KL + Sbjct: 154 SLSPQSQTSREALTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISST 213 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 214 AGLTRYALEHGVL 226 >gi|330828126|ref|YP_004391078.1| putative csgAB operon transcriptional regulatory protein [Aeromonas veronii B565] gi|328803262|gb|AEB48461.1| Probable csgAB operon transcriptional regulatory protein [Aeromonas veronii B565] Length = 215 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE ++ G ++ EIA+ L +S HTV ++L + KL+ NRIQA++ A Sbjct: 151 LTAREQEIIRYLMTGASNVEIADSLFVSEHTVKSHLYNVFKKLNVKNRIQAVSWAKE 207 >gi|229115351|ref|ZP_04244759.1| Two-component protein Kinase [Bacillus cereus Rock1-3] gi|228668071|gb|EEL23505.1| Two-component protein Kinase [Bacillus cereus Rock1-3] Length = 592 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEQFDEQNETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y SA KL N+ +A+ KA+ G I Sbjct: 565 YASSAYTKLGVRNKEEAVQKALEIGII 591 >gi|290955190|ref|YP_003486372.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644716|emb|CBG67801.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177 +GYV+ + L GA ++ ++L + + +T R Sbjct: 103 AGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALVRNYLDRVRHGEEPPDQVVTPR 162 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G++S+EIAE L +S+ TV+ + + KL +R++ AIR G I Sbjct: 163 EEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGLI 219 >gi|291303524|ref|YP_003514802.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572744|gb|ADD45709.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 217 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 18/161 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + R+ +A V +I +A ++ Sbjct: 57 LDVHMPDGGGRAVLERVRASRPDVKFLALSVSDAAEDVIGLIRAGARGYVTKTIAASELV 116 Query: 148 EAHG------------ACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEE 193 A V+ F + + LT RE L+L GY +E Sbjct: 117 AAIRRVAEGDAVFSPRLAGFVLDAFASKSQAPASDPELDQLTNREREVLRLLARGYAYKE 176 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA +L +S+ TV ++ + KL NR + A+ + Sbjct: 177 IARELYISIKTVETHVSNVLRKLQMSNRYELSRWAVDRRIV 217 >gi|163751528|ref|ZP_02158750.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica KT99] gi|161328536|gb|EDP99689.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica KT99] Length = 209 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 14/134 (10%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDFLEL 163 L + + V ++ ++++E Q E Sbjct: 72 LRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKQAMQGHRVISES 131 Query: 164 FKK----------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + NLT RE LQL G ++ I+E+L +S TV ++ + Sbjct: 132 VEDYLYELKDAIDEKDWIDNLTPRELQILQLVAQGMSNRTISEQLHISEGTVKVHVKNLL 191 Query: 214 VKLDAVNRIQAIAK 227 K +A +R + + Sbjct: 192 RKANAKSRTEMAVR 205 >gi|284029210|ref|YP_003379141.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808503|gb|ADB30342.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 213 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 18/161 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + ++ ++ +A V VI ++ ++ Sbjct: 53 LDVHLPGGGGTEVMKQVHQRHPEVKFLALSVSDAAEDVIGVIRAGARGYVTKNISGTELV 112 Query: 148 EAHGA--------CYQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEE 193 +A G ++ L+ F A L++RE L+L GY +E Sbjct: 113 DAIGRVADGDAVFSPRLAGFVLDAFSGAIDIASVDEDLDRLSQREREVLRLIARGYAYKE 172 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A +L +SV TV ++ S KL NR + A + Sbjct: 173 VARELFISVKTVETHVSSVLRKLQLSNRHELTRWATDRRLV 213 >gi|284032205|ref|YP_003382136.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811498|gb|ADB33337.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 221 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G+G +++EIA +L LS T ++ A VKL +R Q + A + Sbjct: 153 DVLTEREREIVALVGEGLSNDEIAARLVLSPATAKTHVSRAMVKLGVRDRAQLVVVAYQT 212 Query: 232 GYI 234 G + Sbjct: 213 GLV 215 >gi|196234582|ref|ZP_03133403.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196221370|gb|EDY15919.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 8/109 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSAA---RNLTERE 178 +GY+I + E I + H + ++ F+ + A L+ RE Sbjct: 99 AGASGYLIKSGP-PEKLFEAIRDVHSGGAPFSAHIARKVVQYFRGTTKPARETEKLSPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++L GY +EI +KLG+ TV +Y+ + +KL NR +A+AK Sbjct: 158 CEVIELLASGYIYKEIGDKLGIGAETVRSYVKNICIKLQVKNRTEAVAK 206 >gi|52082580|ref|YP_081371.1| CheY-like [Bacillus licheniformis ATCC 14580] gi|52787980|ref|YP_093809.1| YvfU [Bacillus licheniformis ATCC 14580] gi|52005791|gb|AAU25733.1| CheY-like [Bacillus licheniformis ATCC 14580] gi|52350482|gb|AAU43116.1| YvfU [Bacillus licheniformis ATCC 14580] Length = 200 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 144 EVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + +A C + F EL LTERE L+LA G T++EI+E+L LS Sbjct: 109 DDLADAIRKCTEGKRTFSPELTFNAVRETNPLTEREQDILRLAYIGKTTKEISEELFLSS 168 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ KLDA NR++A A G+I Sbjct: 169 GTVRNYISEIMQKLDAKNRMEAARIAEGKGWI 200 >gi|22125339|ref|NP_668762.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis KIM 10] gi|45442440|ref|NP_993979.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Microtus str. 91001] gi|167399199|ref|ZP_02304723.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|21958219|gb|AAM85013.1|AE013747_3 nitrate/nitrite response regulator [Yersinia pestis KIM 10] gi|45437305|gb|AAS62856.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Microtus str. 91001] gi|167051703|gb|EDR63111.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 220 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166 I V +I E+++E + + +L + Sbjct: 93 IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 152 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + LTERE LQ G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 153 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 212 Query: 227 KAIRF 231 + Sbjct: 213 MYLEN 217 >gi|254453849|ref|ZP_05067286.1| two component transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] gi|198268255|gb|EDY92525.1| two component transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] Length = 204 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LTERE L+ +G ++++IA L + TV ++ + K+ NR QA Sbjct: 138 NPLVDKLTERELQMLKGLTEGKSNKQIARDLEIREPTVKLHMKTLYRKMGVENRTQAAMI 197 Query: 228 AIRFGY 233 A G Sbjct: 198 ASEAGL 203 >gi|77919001|ref|YP_356816.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545084|gb|ABA88646.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM 2380] Length = 214 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + A NLT+ E L+ +G T+ EIA+ +S+ T+ ++ KL+ NR Sbjct: 142 RQRQDDGGAEHNLTKTEIKVLKHIAEGKTNNEIAQIQFVSIETIKTHVQRIFKKLEVGNR 201 Query: 222 IQAIAKAIRFGYI 234 ++A+A A + I Sbjct: 202 MEAVAVARKKNII 214 >gi|302551299|ref|ZP_07303641.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468917|gb|EFL32010.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + A + ++ + + L++RE L L G G Sbjct: 110 RPAELLDAIRTVAAGDSLLSPGPTARLIQRFLRSPSAPETGGPECLSDREREVLTLVGRG 169 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIAE LGLS T ++ KL A +R Q + A G + Sbjct: 170 LNNTEIAESLGLSPLTAKTHVSRIMGKLAARDRAQLVIVAYESGLV 215 >gi|256819682|ref|YP_003140961.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] gi|256581265|gb|ACU92400.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] Length = 234 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L LA G++S+EIAE+L +S +TVN + + K + + I+AI A R G Sbjct: 174 LTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDLARRKGI 233 Query: 234 I 234 + Sbjct: 234 L 234 >gi|226365679|ref|YP_002783462.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244169|dbj|BAH54517.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 3/123 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + +G + + + A + Sbjct: 99 RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPQLDPE 155 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE+L +SV TV + + K NR A R Sbjct: 156 LDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHR 215 Query: 231 FGY 233 Sbjct: 216 RRI 218 >gi|187250721|ref|YP_001875203.1| two component LuxR family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186970881|gb|ACC97866.1| Two-component transcriptional regulator, LuxR family [Elusimicrobium minutum Pei191] Length = 215 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E LQL +G++S+EIA++ GLS++TV+ + + KLD + + + AI+ G Sbjct: 152 GLTPKEKQILQLIAEGFSSKEIAKEFGLSLNTVHVHRNNIMRKLDIHKQAELVRYAIKEG 211 Query: 233 Y 233 Sbjct: 212 I 212 >gi|328885370|emb|CCA58609.1| Response regulator containing a CheY receiver domain and an HTH DNA-binding domain [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L +G+++ L + V + A G +++ + +R++ L Sbjct: 95 LHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLVEQYTAGGPRRTAPDPRLDV 154 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L L G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 155 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|289549975|ref|YP_003470879.1| Two-component response regulator [Staphylococcus lugdunensis HKU09-01] gi|315659398|ref|ZP_07912261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179507|gb|ADC86752.1| Two-component response regulator [Staphylococcus lugdunensis HKU09-01] gi|315495517|gb|EFU83849.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 217 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + A+ Sbjct: 151 PFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMSKLGLKSKPELVEYAL 210 Query: 230 RFGYI 234 + + Sbjct: 211 KKKLL 215 >gi|290963132|ref|YP_003494314.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260652658|emb|CBG75791.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 37/84 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G +V+ LT RE L L G G +++EIAE+L ++ TV + Sbjct: 135 GLIARVLAAPSPGDLVDPRRLATLTPREREVLTLVGSGLSNDEIAERLFVTPVTVKTHAN 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 A KL A +R Q + A G + Sbjct: 195 RAMTKLGARDRAQLVVIAYETGLV 218 >gi|238893250|ref|YP_002917984.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae NTUH-K2044] gi|238545566|dbj|BAH61917.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 921 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE LQL +G ++EIA L +S TV ++ + KL +R QA+++A+ Sbjct: 859 ELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918 Query: 233 YI 234 + Sbjct: 919 LL 920 >gi|116628047|ref|YP_820666.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101324|gb|ABJ66470.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 200 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L++RE L + G T++EIAE L LS TV Y+ + KLDA NR Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ A ++ Sbjct: 187 TEAVRIAKEKDWL 199 >gi|15598795|ref|NP_252289.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107103113|ref|ZP_01367031.1| hypothetical protein PaerPA_01004182 [Pseudomonas aeruginosa PACS2] gi|116051597|ref|YP_789565.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218890176|ref|YP_002439040.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254236515|ref|ZP_04929838.1| hypothetical protein PACG_02512 [Pseudomonas aeruginosa C3719] gi|254242297|ref|ZP_04935619.1| hypothetical protein PA2G_03038 [Pseudomonas aeruginosa 2192] gi|296387897|ref|ZP_06877372.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313108957|ref|ZP_07794932.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] gi|9949755|gb|AAG06987.1|AE004780_6 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115586818|gb|ABJ12833.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa UCBPP-PA14] gi|126168446|gb|EAZ53957.1| hypothetical protein PACG_02512 [Pseudomonas aeruginosa C3719] gi|126195675|gb|EAZ59738.1| hypothetical protein PA2G_03038 [Pseudomonas aeruginosa 2192] gi|218770399|emb|CAW26164.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310881434|gb|EFQ40028.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] Length = 261 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 59/228 (25%), Gaps = 26/228 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 + L++ + ++ + + P+ + D F Sbjct: 29 RLVRLLEQYVPFDSWV--ALLFSQGRPQVFAECPGADGGPDPLFQDYLRGLYLL-DPFYI 85 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 +++ R + I V+L + + Sbjct: 86 ASRENPCSGLFRLADVAPECFEQTDYYQRYFRLNVVADEIQINVQLSGERTLCLSL-GSR 144 Query: 139 LMLANEVIIEAHGA---CYQVITDFLELFKK--RSSAAR-----------------NLTE 176 E + ++ L + S AA LT Sbjct: 145 RRFTPEQLAVLGLVRPWVAGLMRQRLAFEDEVLNSPAAPEPGWQGSLEKVAEQMGTPLTA 204 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 RE +L G +S+EIA KL +S TV + KL ++ + Sbjct: 205 RELEVGRLMLSGCSSKEIARKLAISAETVKVHRKHMYGKLGIKSQSEL 252 >gi|304439828|ref|ZP_07399722.1| possible response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371567|gb|EFM25179.1| possible response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 196 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+ G ++IA+KL +S T+ ++ + KL A N ++A +A+ Sbjct: 130 ETLTEREVEVLREMIKGENKKDIAKKLYISERTLYNHISNIYEKLGAKNIVEAYNRAMEL 189 Query: 232 GYI 234 GYI Sbjct: 190 GYI 192 >gi|325676301|ref|ZP_08155980.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325552862|gb|EGD22545.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 208 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L+++ L+ RE L L G ++ IA++L +S TV ++L A KL Sbjct: 133 AQRLYRRMQQPRVELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVD 192 Query: 220 NRIQAIAKAIRFGYI 234 +R A+A A G I Sbjct: 193 SRTAAVAAARERGLI 207 >gi|296140116|ref|YP_003647359.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028250|gb|ADG79020.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 215 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 32/64 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE L L DG ++ EI + LSV TV ++ + KL NR+QA A R Sbjct: 147 TERLSPREREVLVLLADGLSNLEIGRTMHLSVGTVKDHVSALLAKLGVANRVQAALVAQR 206 Query: 231 FGYI 234 G + Sbjct: 207 AGLL 210 >gi|224023812|ref|ZP_03642178.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM 18228] gi|224017034|gb|EEF75046.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM 18228] Length = 149 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + +++ + + + ++ S +L++RE + G T++EIAE+L +SVHTV Sbjct: 55 DLDAVAHKI-STLMNVNEEEDSDQNSLSQREKEIIGCVVRGMTNKEIAEQLFISVHTVIT 113 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + T KL + AI + Sbjct: 114 HRRNITRKLQIHSAAGLTIYAIVNKLV 140 >gi|70730584|ref|YP_260325.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344883|gb|AAY92489.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 224 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 9/209 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79 + + A A Y I++ L Q L+ Y D H Sbjct: 18 IAAFTRVVPASLCAFYRIDAQL-----QARDFSLYRMPEQMHQAYLQHFRHY-DPLQPRH 71 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-- 137 + P++ + ++ + G + + Sbjct: 72 CAAAGRPVLSLHMGMAHQGHHESEVYQGFLQRHGVLDVVEILACDGERPVAGLSLLRDVG 131 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + E + H + L + + LT RE L DG ++ IA + Sbjct: 132 LGHFSVEELGTLHALQGLLEIAALAPWSQVDERLSGLTPREREIAWLLRDGADNKTIARR 191 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L L + TV +L + K+ A NR + + Sbjct: 192 LDLGLPTVKTHLINLFRKVGASNRTELVR 220 >gi|258650856|ref|YP_003200012.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554081|gb|ACV77023.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 228 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 S + LT RE L L G ++ EI++ L + T ++ KL Sbjct: 141 FASHTPADLPGPSELQALTAREREVLVLIAHGLSNAEISDHLVVGEGTTKTHVNRIFNKL 200 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+A A + G + Sbjct: 201 GLRDRAQAVAMAYKSGLL 218 >gi|284030392|ref|YP_003380323.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809685|gb|ADB31524.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 217 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 3/96 (3%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + A ++++ L + AA + RE L G ++ EI +L Sbjct: 119 RAASRGETVLAPPVAARLMS---RLRTPAAPAAVQPSPRELEVLAAVARGLSNAEIGREL 175 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV +L KLD +R +A+ AI G + Sbjct: 176 FIGEATVKTHLQRLFSKLDVDDRTRAVTVAIERGLL 211 >gi|213857580|ref|ZP_03384551.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 99 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 EV + + ++ L + ++RE L+ +G TS EIA L +S Sbjct: 8 EVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISE 67 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +TVN + + K +A N+ Q A G I Sbjct: 68 NTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 99 >gi|186470747|ref|YP_001862065.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197056|gb|ACC75019.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 215 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 15/140 (10%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV----------- 156 + + I V + L ++ E Q Sbjct: 71 MRQAGVDARFIMLTVSDNERDVVAALRAGAHGYLLKDMDPEDLCVSLQKALKGTAVLSES 130 Query: 157 ----ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + L ++ +A +LT RE G ++ IA KL +SV TV ++ Sbjct: 131 VTGSLVHALSGGQRIPAAQNDLTARELEVFDYLVAGLCNKAIARKLDISVGTVKVHVKHV 190 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KLD +R++A+ G Sbjct: 191 LRKLDLHSRLEAVLWQQEHG 210 >gi|39998319|ref|NP_954270.1| LuxR family DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39985265|gb|AAR36620.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] gi|298507253|gb|ADI85976.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter sulfurreducens KN400] Length = 229 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +++ +G TS +IAE L L++ TV + + KL ++++ + A R G Sbjct: 159 LTPREQQVMRMIVEGATSRQIAESLELTLKTVENHRTNLMRKLQVHSKLELVRYAARLGL 218 Query: 234 I 234 I Sbjct: 219 I 219 >gi|16331883|ref|NP_442611.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1001802|dbj|BAA10682.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 209 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L G ++ +IA L + TV +++ KLD +R QA+ A++ Sbjct: 145 PELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKR 204 Query: 232 GYI 234 G + Sbjct: 205 GIV 207 >gi|229590732|ref|YP_002872851.1| GerR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229362598|emb|CAY49506.1| GerR family regulatory protein [Pseudomonas fluorescens SBW25] Length = 219 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 10/209 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79 L + A Y ++ L Q LH + D + Sbjct: 14 LQAFTQLVPVSQAAFYCVDRQL-----QACDFRLHGMSREMHRDYLD-NYRQFDPLQPRN 67 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF--TSE 137 S L ++ + + T+E Sbjct: 68 CLSSGLTVVPLGFAMARQPPRDSHRYRNFLQRYGVVDVVEIVAHRADQPQAAISLLRTAE 127 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + + + + ++ + + A LT +E L G +++++A + Sbjct: 128 QGVFTADQLTQLNAL-QALLQMAVANMQPCDDALAGLTPKERQIAWLLRQGASNKQLALE 186 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LG+ + T+ +L K +R + +A Sbjct: 187 LGVGLPTIKTHLIHLFRKTGVSSRTELVA 215 >gi|312863667|ref|ZP_07723905.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311101203|gb|EFQ59408.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 200 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L++RE L + G T++EIAE L LS TV Y+ + KLDA NR Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ A ++ Sbjct: 187 TEAVRIAKEKDWL 199 >gi|298245303|ref|ZP_06969109.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552784|gb|EFH86649.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ +TERE L L GYT+++IAE L +S T ++ KL R +A Sbjct: 141 ANAPKEAITEREREVLALVARGYTNKQIAEGLSMSEKTARNHVSHILEKLGLTRRSEAAV 200 Query: 227 KAIRFGYI 234 A+ + Sbjct: 201 YAVEHNLV 208 >gi|322417997|ref|YP_004197220.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320124384|gb|ADW11944.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 212 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q + L+ A LT+RE +++ G ++EIA++L +S TV +L + Sbjct: 131 AKQALEKLLKREAGGREVAGLLTQREIELVRMVAGGSRNKEIADRLCISEGTVKVHLHNI 190 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 K++ R+ + A G + Sbjct: 191 YQKINVDGRVALLRYAQEKGLV 212 >gi|319795618|ref|YP_004157258.1| autoinducer-binding domain protein [Variovorax paradoxus EPS] gi|315598081|gb|ADU39147.1| Autoinducer-binding domain protein [Variovorax paradoxus EPS] Length = 320 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 69/251 (27%), Gaps = 29/251 (11%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ + + + + + + T++ R Q N + Sbjct: 64 RARAPEARQRMVRGMLGSMGFDWLSYGTVSLVGGRVRTQSFFTAYAN--AEWVQRYFASN 121 Query: 70 ETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-- 122 D LP+ W +I + Q+ + +G+ F V Sbjct: 122 HMQVDPRHQETPLSSLPLTWDLEQIEAIAAAGTACAQQQVFLDDMRACGMHSGMLFRVAS 181 Query: 123 --RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--------------- 165 H V + I + +FL + Sbjct: 182 LKNSNEHAVIGVQSQRSGRDWISSEIAGQALMLGFSVHEFLARHELTPSEVDAQASLSSL 241 Query: 166 ---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 R +L+ + L G + +EIA++L +S H V+ ++ + NR+ Sbjct: 242 QHAARPPEGAHLSPMQQRILAHLLHGLSDKEIAQRLSVSAHAVDYHMRQLRRRFAVRNRL 301 Query: 223 QAIAKAIRFGY 233 Q G+ Sbjct: 302 QLANAVQDAGW 312 >gi|302557180|ref|ZP_07309522.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302474798|gb|EFL37891.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 382 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 44/113 (38%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR + + + +LA V + + LT RE Sbjct: 265 VRRDDLVHAVRVVAAGDSLLAPAVTRRLVADIVRRRRERAAADTATPQRLDTLTAREVET 324 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA L +S HTV ++ + KL +R+QA+ A G I Sbjct: 325 LRLLARGLSNAEIATTLFVSEHTVKTHVSNVLGKLALRDRVQAVICAYETGLI 377 >gi|312198094|ref|YP_004018155.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229430|gb|ADP82285.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 219 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + ++ ++ LT RE L+L G + EIA+ L +S TV +++G+ Sbjct: 132 RMMRAYRGAVASRRREAARLDLLTAREHDVLRLLARGQVNAEIAQALRVSPGTVKSHIGA 191 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R AI A G + Sbjct: 192 IFEKLGVRDRAAAIVFAFDHGIV 214 >gi|239942277|ref|ZP_04694214.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988743|ref|ZP_04709407.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445736|ref|ZP_06585126.1| response regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291348683|gb|EFE75587.1| response regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S +LT+RE L Sbjct: 105 AGATGYLLKAERPEELFAAIRSAAQGRTTLSAPVASRVMARMRSPRPSLTDRERDILAQL 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A++ A + Sbjct: 165 SQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213 >gi|170723583|ref|YP_001751271.1| ATP-dependent transcriptional regulator LuxR [Pseudomonas putida W619] gi|169761586|gb|ACA74902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudomonas putida W619] Length = 905 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 44/86 (51%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +++ EL S +L+ RE + L+L G ++++I+E+L +S+HTV + Sbjct: 819 ACKVQVELLARLPELAAPGSGTCESLSGRELAVLELIAQGCSNQQISERLFISLHTVKTH 878 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL R QA+A+A G + Sbjct: 879 ASHINSKLGVERRTQAVARAKSLGLL 904 >gi|328884928|emb|CCA58167.1| transcriptional regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 327 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 15/225 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L + RL + +A ++ + + D + + + Sbjct: 118 RITGLDHVRERLEDLAANARAE-----CLSLLPGGAQLPDTMDASQPLDQLALERGVKIR 172 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 Y + F + + + + E+ V + ++ PV + Sbjct: 173 SIYQESF----RNDPPTVEYVRWYCDLGGEARTVPVVPMLMVIVDREAALVPVDPEDGRA 228 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + + ++ ++ + A +L+ +E L L G G Sbjct: 229 GAL------EVRSPGLVHALVVLFDRLWDAGTPFGETPRRDAHDLSPQERELLMLLGIGC 282 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T + A +LG+S+ TV +L A +R +A +A + G++ Sbjct: 283 TDDIAARRLGISLRTVRRMSSELMNRLGARSRFEAGVRAAKEGWL 327 >gi|319441256|ref|ZP_07990412.1| two-component system transcriptional regulatory protein [Corynebacterium variabile DSM 44702] Length = 205 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 43/112 (38%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 L GY++ + L V+ A G L ++ L+ RET L Sbjct: 94 SLAAGARGYLLKDAPETDLHRAVMSTARGDPTFSPEVGAALARRVGRPDLALSRRETEIL 153 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G ++ E+A L +S TV +L KL NR A+ +A I Sbjct: 154 RALATGASNREVASSLFISPATVKTHLIHIYRKLGVDNRTAAVTEAQVRKLI 205 >gi|298369040|ref|ZP_06980358.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] gi|298283043|gb|EFI24530.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] Length = 218 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + S + + + V + + LT RE L G+++ Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPASPRADHLLSTLTPREMEILGYLAAGHSN 170 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + IA L L+ T+ ++ + KL+ +R+QA A++ Sbjct: 171 KVIARHLELAESTIKVHVQNILRKLNLSSRVQAAVYAVQH 210 >gi|298250569|ref|ZP_06974373.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548573|gb|EFH82440.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRS------SAARNL 174 L GY++ ++ L + + A +++ L A L Sbjct: 101 LRAGACGYLLKDTDRETLFHAIRAAARGDLLLQPEIMARILARTTDAPHSTPSRPQAEEL 160 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ G S+EIA +LG+S+ TV ++L S KL +R A+A I G + Sbjct: 161 TERECEVLEAVARGERSKEIASRLGISLRTVGSHLTSIYSKLGVDSRASAVATGIERGLL 220 >gi|212702417|ref|ZP_03310545.1| hypothetical protein DESPIG_00433 [Desulfovibrio piger ATCC 29098] gi|212674078|gb|EEB34561.1| hypothetical protein DESPIG_00433 [Desulfovibrio piger ATCC 29098] Length = 222 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 157 ITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + ++R S A L+ RE +L DGY+ +I + L +S TV + Sbjct: 137 MAALMRQNRQRLSPAEGGPDIGMLSPREKEIFRLLADGYSVRQIGDALNISPKTVETHKY 196 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL A + + AIR G + Sbjct: 197 SVLTKLRASSINELTKMAIRLGLV 220 >gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 237 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + LT E G T+++I+ +L +S TV +L S KL NR Q Sbjct: 162 EETVTPTPLPLTPAEERVFWEVIQGLTNKQISNRLFISPRTVQTHLSSILNKLKLGNRAQ 221 Query: 224 AIAKAIRFGY 233 I A GY Sbjct: 222 LIRFAYENGY 231 >gi|325520456|gb|EGC99559.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 510 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 23/170 (13%) Query: 88 IWQSIQEETVIESSGQLSVRLEG------------GLLPFAGIAFPVRLGFHKNGYVIFT 135 +W +++ + + + ++ Sbjct: 322 LWAERGARQRLDAQLARDGNVRNADVQIRTLDGDVRDCLVSADPVAIHGQDCLLVALLDI 381 Query: 136 SEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQL 184 S+ E+ + +A +I + + + A LT RE L Sbjct: 382 SDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDL 441 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA +LGL+ +TV ++ + KLD +R +AI A G + Sbjct: 442 LCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|227503398|ref|ZP_03933447.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227075901|gb|EEI13864.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 253 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + LT RE L+L GY++ EI+E+ +S+ TV ++ K + +R+QA+ Sbjct: 176 APPSAELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLY 235 Query: 228 AIRFGYI 234 A G + Sbjct: 236 AYTHGVV 242 >gi|225872958|ref|YP_002754415.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] gi|225792212|gb|ACO32302.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] Length = 216 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L+ G ++ IAE+L +S TV +++ + KL A +R A+ A+R Sbjct: 150 DELSKRELEILRQVAAGLPNKLIAERLSISPDTVKSHIANILSKLGANDRTHAVTLAVRR 209 Query: 232 GY 233 GY Sbjct: 210 GY 211 >gi|229130601|ref|ZP_04259557.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|6759482|emb|CAB69808.1| putative two-component response regulator [Bacillus cereus ATCC 14579] gi|228652940|gb|EEL08822.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 159 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 98 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 157 Query: 233 YI 234 +I Sbjct: 158 WI 159 >gi|300725937|ref|ZP_07059399.1| transcriptional regulator [Prevotella bryantii B14] gi|299776788|gb|EFI73336.1| transcriptional regulator [Prevotella bryantii B14] Length = 214 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + H Q +T+ L + ++ + NLT+ E L+ G T++EIAEK S Sbjct: 116 FAMRNHRYICQRMTEMLLVSREVTPEKEQINLTKTEIEILKDIALGMTTKEIAEKRFSSF 175 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 HTVN + + KL+ N +A A+R G + Sbjct: 176 HTVNTHRKNIFRKLNVNNVHEATKYALRAGLV 207 >gi|256396266|ref|YP_003117830.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362492|gb|ACU75989.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +L + + A LT+RE +G +++EIA +L LS TV ++ A VK+ A + Sbjct: 148 RQLDQAQRGALDALTDRERQITGFVAEGLSNDEIAARLVLSPATVKTHVNRAMVKVGARD 207 Query: 221 RIQAIAKAIRFGY 233 R Q + A R G Sbjct: 208 RAQLVVFAHRSGL 220 >gi|37681138|ref|NP_935747.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|320155205|ref|YP_004187584.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] gi|326423837|ref|NP_760342.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] gi|37199889|dbj|BAC95718.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|319930517|gb|ADV85381.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] gi|319999206|gb|AAO09869.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] Length = 215 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 12/147 (8%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF---PVRLGFHKNGYVIFTSEFLML 141 LP+IW+ E + +L+ G I + + VI +L Sbjct: 72 LPLIWKG-FETVLCNVPSRLTTEELIGFGQCKAIFYRDTAITDMAKGLNSVINGKSWLPR 130 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + + S +LT RE L+ G ++ +IAE L +S Sbjct: 131 DVSAQLIHYYRNM--------VCSHTSPVNVDLTMREIQVLRCVQSGKSNSQIAEDLFIS 182 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 TV ++L KL NR+QA A A Sbjct: 183 EFTVKSHLYQTFRKLSVKNRVQAAAWA 209 >gi|325916009|ref|ZP_08178302.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325537819|gb|EGD09522.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L L G ++++I L +S TV A++ + KL +R A+ A+R Sbjct: 147 DALSARETEVLSLVATGCSNKQIGNALSISEETVKAHMKNILAKLGVRDRTHAVTVALRR 206 Query: 232 GYI 234 G + Sbjct: 207 GIL 209 >gi|262173869|ref|ZP_06041546.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451] gi|261891227|gb|EEY37214.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451] Length = 200 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 73 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 132 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 133 ESNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 192 Query: 227 KAIRF 231 + Sbjct: 193 LYLER 197 >gi|302529365|ref|ZP_07281707.1| response regulatory protein [Streptomyces sp. AA4] gi|302438260|gb|EFL10076.1| response regulatory protein [Streptomyces sp. AA4] Length = 211 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 40/109 (36%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + + LT+RE L+ Sbjct: 102 AGATGYLLKAESADELYAAIRAAAAGRTALSAPVADRMMAQLRAPRPALTDRERDILEQL 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L +S TV +LG KL R A+A A + Sbjct: 162 AQGLGNREIARRLFISEATVKTHLGRIYEKLGVDTRAGAVAVAKEQRLL 210 >gi|189353456|ref|YP_001949083.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189337478|dbj|BAG46547.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 244 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 57/231 (24%), Gaps = 22/231 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72 + LH + A FA + + EL Sbjct: 12 AADWQRALHACVDAFDA--FASPSAIVFYRLDASGEPADFELFGMPESMHRTYVA-RYRM 68 Query: 73 GDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D S ++ + Q + R + +R G Sbjct: 69 LDPLHPSRCASDARTVVTLASQLPDECRDASAYWTRFLRRHGVADVVEIWLRDDGRTVGA 128 Query: 132 VIFTSEFLMLAN---------------EVIIEAHGACYQVITDFLELFKK--RSSAARNL 174 A + + +T L + R L Sbjct: 129 FSLLRFDTRGAARGGDGASTRFAPGEIDALARLQPLAEAALTPLLRTRRGIHRIECEARL 188 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE +L DG +++EIA L L T+ +L KL NR + + Sbjct: 189 TYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239 >gi|154685055|ref|YP_001420216.1| YdfI [Bacillus amyloliquefaciens FZB42] gi|154350906|gb|ABS72985.1| YdfI [Bacillus amyloliquefaciens FZB42] Length = 211 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 156 VITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ F E+ ++ ++ LT++E L+ G+ S+ IA LG+S TV A L S Sbjct: 128 ILRRFREMKMERANANETQLTDKEIIVLEAVAQGHKSKAIAFDLGISERTVKARLTSIYN 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A +R +A+ A++ G + Sbjct: 188 KLGADSRTEAVTIAMQKGIL 207 >gi|323176891|gb|EFZ62481.1| response regulator [Escherichia coli 1180] Length = 204 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155 L + I V +I EV++EA A + Sbjct: 60 LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 119 Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +L + + LTERE L G ++++IA L +S TV ++ Sbjct: 120 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 179 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 180 NLLRKLNVRSRVAATIL 196 >gi|289705344|ref|ZP_06501740.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557859|gb|EFD51154.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 230 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYT 190 + + ++ + ++ +D + + ++ +A +LT RE L L G Sbjct: 125 VHRGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVLMAQGAA 184 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA +L LS TV ++G KL A +R+QA+ A R G + Sbjct: 185 NLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228 >gi|284032185|ref|YP_003382116.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811478|gb|ADB33317.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 222 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 6/103 (5%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 VI + ++ H S LT RE L L G ++ Sbjct: 118 VIAAGDGMLAPTVTRRLIHAFAQAA------PTPGTSQTLDRLTPREREVLALLAAGRSN 171 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI ++LG++ TV ++ + KLDA +R+QA A G + Sbjct: 172 AEIGDELGVATGTVKTHVNALLSKLDARDRVQATIIAYDTGLV 214 >gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 236 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 29/65 (44%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT E G T++EI+++L +S TV +L S KL NR Q + A Sbjct: 167 PKPLPLTPAEERVFWQVIQGLTNKEISDRLFISPRTVQTHLSSILHKLKLHNRSQLVRFA 226 Query: 229 IRFGY 233 GY Sbjct: 227 YEQGY 231 >gi|306836360|ref|ZP_07469338.1| two component system response regulator [Corynebacterium accolens ATCC 49726] gi|304567720|gb|EFM43307.1| two component system response regulator [Corynebacterium accolens ATCC 49726] Length = 253 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + LT RE L+L GY++ EI+E+ +S+ TV ++ K + +R+QA+ Sbjct: 176 APPSAELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLY 235 Query: 228 AIRFGYI 234 A G + Sbjct: 236 AYTHGVV 242 >gi|152988324|ref|YP_001346926.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150963482|gb|ABR85507.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 262 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 62/242 (25%), Gaps = 29/242 (11%) Query: 8 GKKSSSLQ--ELSPRLHLIQNRI-KARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 G+ +L + RL + ++ ++ + + P+ Sbjct: 16 GQLVEALDAPDFWIRLVRLLDQYVPFDSWV--ALLFSQGRPQVFAECPGADGGPDPLFQD 73 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D F +++ R + I V+L Sbjct: 74 YLRGLYLL-DPFYIASRENPGSGLFRLADVAPECFEQTDYYQRYFRLNVVADEIQVNVQL 132 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKK---RSSAARN----- 173 + + E + ++ L + + Sbjct: 133 AGERTLCLSL-GSRQRFTPEQLAVLGLVRPWVAGLMRQRLAFEDEVLNSPAPPEPGWQGS 191 Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE +L G +S+EIA KL +S TV + KL ++ Sbjct: 192 LEKVAEQMGTPLTARELEVGRLMLSGCSSKEIARKLAISAETVKVHRKHMYGKLGIKSQS 251 Query: 223 QA 224 + Sbjct: 252 EL 253 >gi|330005638|ref|ZP_08305316.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] gi|328536204|gb|EGF62585.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] Length = 841 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A + D L+ERE LQL +G ++EIA L +S TV ++ Sbjct: 757 WAGKRAPADGTPFNSGSPDIHGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIK 816 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R QA+++A+ + Sbjct: 817 NIYAKLKVNSRTQAMSRALEMKLL 840 >gi|325263734|ref|ZP_08130467.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] gi|324030772|gb|EGB92054.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] Length = 240 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT RE + L G ++++IA +L +S HTV A++ + KL NR Q Sbjct: 179 ALSELTSREREIIHLVSIGMSNQQIAGQLQISEHTVKAHISNILKKLSLNNRTQLAIY 236 >gi|237794891|ref|YP_002862443.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4 str. 657] gi|229263459|gb|ACQ54492.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4 str. 657] Length = 865 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 40/70 (57%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 I + +++ + LTERE +++ +G ++++I ++L +S+ TV ++ + K Sbjct: 785 FIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNISLATVKTHMINIYSK 844 Query: 216 LDAVNRIQAI 225 L NR+QA+ Sbjct: 845 LQVSNRVQAV 854 >gi|297200976|ref|ZP_06918373.1| two component LuxR family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197712244|gb|EDY56278.1| two component LuxR family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 233 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIA 195 A + A ++++ F + + LT RE ++ G ++EE+A Sbjct: 114 AAAAGQTMLAPSIAARLVSWFRAQPEPQEAVMCPEVAELTPREREVTRMVALGMSTEEVA 173 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L + TV +L KL +R + ++ A R G I Sbjct: 174 SELIIGEATVRTHLYRVRTKLGVRDRAELVSLAYRTGLI 212 >gi|168182481|ref|ZP_02617145.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf] gi|182674457|gb|EDT86418.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf] Length = 865 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 40/70 (57%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 I + +++ + LTERE +++ +G ++++I ++L +S+ TV ++ + K Sbjct: 785 FIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNISLATVKTHMINIYSK 844 Query: 216 LDAVNRIQAI 225 L NR+QA+ Sbjct: 845 LQVSNRVQAV 854 >gi|218782824|ref|YP_002434142.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218764208|gb|ACL06674.1| two component transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 219 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q+I + + ++ +LT+RE QL +G T+++IA+ L +S TV+ + Sbjct: 133 LSGQLIHSVINPDTREAADPLASLTQREKEVFQLVAEGNTNQQIADLLFISPKTVDKHRT 192 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KLD + + A++ G I Sbjct: 193 NLMKKLDLHSAREVSNFALKNGII 216 >gi|89054792|ref|YP_510243.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88864341|gb|ABD55218.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 267 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 70/232 (30%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +++++L + + L N D + Sbjct: 9 EMTTVEDLWSHHTKTLASYGFDRVFYGFNAFRGAGLYDNPEDALLLTNMPTDYVEAYVDG 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSI--QEETVIESSGQLSVRLEGG-LLPFAGIAFP---- 121 + + W+ + S G+L++R AG Sbjct: 69 GMFRDGVMMRWATENVGAASWRDVYMAMANDAPSKGELAMRAMNEKHDITAGYTISFPMA 128 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTE 176 ++ G + + I HG C+ L+L + + LT Sbjct: 129 IKNANAGIGMAVKKG-MGQDEADAIWREHGEDIETICHVAHLCILQL--PATGQRKLLTP 185 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R++ L+L DG T +IA L +V T+ +L A L QA+ KA Sbjct: 186 RQSEVLELVADGKTMADIALLLERNVATIEKHLRGARDALGVETTAQAVRKA 237 >gi|5051409|emb|CAB44989.1| NarL protein [Pseudomonas stutzeri] Length = 218 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 17/144 (11%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154 + R+ + I F V + + E +IE Sbjct: 71 TRRMRDADIDARIIMFTVSDEQSHVLEALRNGADGYLLKDMDAEQLIEQIRIAATGRMAL 130 Query: 155 -----QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 QV+ + + + K S + +LT+RE L+L G +++ IA KLG++ TV Sbjct: 131 SPELTQVLAEAIRVRPKPSGQVQFSHLTKREKEVLRLIAKGQSNKMIARKLGITEGTVKV 190 Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231 ++ + KL +R++A + Sbjct: 191 HVKNLLHKLGLRSRVEAAVWVLEN 214 >gi|317057055|ref|YP_004105522.1| LuxR family two component transcriptional regulator [Ruminococcus albus 7] gi|315449324|gb|ADU22888.1| two component transcriptional regulator, LuxR family [Ruminococcus albus 7] Length = 211 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 37/65 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + LTERE L++ G T++++AE+LG+S +TV +++ S K +R + KA Sbjct: 140 ADSSELTERELEILRIVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRTELAIKA 199 Query: 229 IRFGY 233 G Sbjct: 200 RVLGI 204 >gi|158318837|ref|YP_001511345.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114242|gb|ABW16439.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 214 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 AG + + + + A E ++ + Sbjct: 95 GLRAGACGFLPKDTRPDALLDAIRT--IAAGEALLSPGATRAVITRALSHPDAPAPERLA 152 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L G +++EIA++L +S T ++G K+ A +R+ + A G Sbjct: 153 SLTAREREVLRLIAAGRSNQEIADELVVSPLTAKTHVGRILAKMGARDRVHLVIAAYEAG 212 Query: 233 Y 233 Sbjct: 213 L 213 >gi|17230648|ref|NP_487196.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132251|dbj|BAB74855.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 228 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G T++EIA L ++ TV ++ + KL+ +R QA+ A++ Sbjct: 158 HPLTGRELEILALLAKGKTNQEIATVLYITPGTVRVHVHAILHKLEVSDRHQAVVVALQK 217 Query: 232 GYI 234 I Sbjct: 218 RLI 220 >gi|322373180|ref|ZP_08047716.1| DNA-binding response regulator [Streptococcus sp. C150] gi|321278222|gb|EFX55291.1| DNA-binding response regulator [Streptococcus sp. C150] Length = 200 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L++RE L + G T++EIAE L LS TV Y+ + KLDA NR Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ A ++ Sbjct: 187 TEAVRIAKEKDWL 199 >gi|300698157|ref|YP_003748818.1| nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum CFBP2957] gi|299074881|emb|CBJ54450.1| Nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum CFBP2957] Length = 217 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 4/104 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGY 189 + A E +I +++ F K LT RE +Q G Sbjct: 112 LVAGVRKAAAGEPVIAESMTA-KLVAHFRAPEKPAQPEAVPVERLTSRERDIVQGLVRGD 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++EIA L ++ TV ++ + KL+ +R+Q A+ G Sbjct: 171 SNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214 >gi|326775725|ref|ZP_08234990.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656058|gb|EGE40904.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 213 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G + L + + A LT RE LQL Sbjct: 103 AGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQLV 162 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++ +I+++L LS TV ++L KL +R A+A A I Sbjct: 163 GEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211 >gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 229 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 8/88 (9%) Query: 155 QVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 Q + +E +K LTERE L+L G ++ EI +KL LS TV Sbjct: 141 QAHSPKIEPEEKIIDPLPPKPTVELPELTEREKQVLELLAQGLSNVEIGQKLHLSPRTVE 200 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y+ S K + NR + + A+ + Sbjct: 201 KYVSSLLRKTETNNRAELVRFALDNDLV 228 >gi|182436087|ref|YP_001823806.1| LuxR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776712|ref|ZP_08235977.1| regulatory protein LuxR [Streptomyces cf. griseus XylebKG-1] gi|178464603|dbj|BAG19123.1| putative LuxR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657045|gb|EGE41891.1| regulatory protein LuxR [Streptomyces cf. griseus XylebKG-1] Length = 330 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 15/227 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 K+ L + RL + + ++ + + D + + Sbjct: 119 IKRLEGLDAVRERLTELAELARTE-----CLSLLPGGAQSPDTLEASGPLDRRALERGVR 173 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 L Y D F + + + + ES ++ L ++ P+ Sbjct: 174 LRSIYQDSF----RNDPSTLRYVNRLGLLGAESRTLPTLPLVMVVVDAEVALVPLDPDDG 229 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + G + S+ + ++ E A + LT +E L L Sbjct: 230 RAGALELRSKGAVAVARLLFEQLWAAATPLGSAPRRD------GNGLTPQEDELLSLLAK 283 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T A +LG+S+ TV T ++ A +R QA A+A R G+I Sbjct: 284 GHTDATAARRLGVSLRTVRRMNAELTARMQARSRFQAGAEAARLGWI 330 >gi|163739745|ref|ZP_02147153.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107] gi|163743097|ref|ZP_02150479.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161383514|gb|EDQ07901.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161386975|gb|EDQ11336.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107] Length = 214 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K LT RE + L G +++++A L +SV TV + + KL + Sbjct: 135 SLKPKDDPDREALTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISST 194 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 195 AGLTRYALEHGVL 207 >gi|163786674|ref|ZP_02181122.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Flavobacteriales bacterium ALC-1] gi|159878534|gb|EDP72590.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Flavobacteriales bacterium ALC-1] Length = 136 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE LQ +G +++EIAE L LS T+ ++ + VKLDA R QA+ KA I Sbjct: 77 SNREYEVLQKIAEGLSNKEIAESLFLSESTIKTHVSNLLVKLDAKRRTQALKKAKSLQII 136 >gi|158333259|ref|YP_001514431.1| LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303500|gb|ABW25117.1| transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 227 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 8/179 (4%) Query: 53 ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 +L + D + D +P+ S+ + + L Sbjct: 51 DLQGLPVSFCDRYQAIGR-DQDITSQQMLRQHVPVKLCSLSTQKHPSNG---MDDLFRTY 106 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSE--FLMLANEVIIEAHGACYQVITDF--LELFKKRS 168 G+ P+ G + F + ++ C + F L + S Sbjct: 107 HIEHGVVAPILGSGQLLGGIYFLRHQGYPPFKTRDLLRISTLCQHLAVQFTTLRFNHQAS 166 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT+RE + L G+T+ EI+ L +SV V L K+ N+ +AK Sbjct: 167 ANHAVLTDRELEIVDLVAQGFTNREISHYLHISVDGVKQRLKRLYRKVGVANQAALVAK 225 >gi|126735912|ref|ZP_01751656.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. CCS2] gi|126714469|gb|EBA11336.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. CCS2] Length = 210 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K S LT RE + L G +++++A L +SV TV + + KL + Sbjct: 133 SLQPKISDGRETLTSREQTILLELAQGQSNKDVANTLNISVRTVETHRKNIKRKLGISST 192 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 193 AGLTRYALEHGVL 205 >gi|302537227|ref|ZP_07289569.1| two-component system response regulator [Streptomyces sp. C] gi|302446122|gb|EFL17938.1| two-component system response regulator [Streptomyces sp. C] Length = 242 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 46/127 (36%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + VR + + + +LA V V Sbjct: 92 EALHAGASGFLLKDVRRDDLVHAVRVVAAGESLLAPSVARRLIEEYTAVTARPAAPDPLA 151 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G G ++ EIA L +S HTV +++G+ KL +RIQA+ Sbjct: 152 AERLGVLTARERETLLHLGRGLSNAEIAAALVVSEHTVKSHVGNVLSKLGLRDRIQAVIC 211 Query: 228 AIRFGYI 234 A G I Sbjct: 212 AYETGLI 218 >gi|282861398|ref|ZP_06270463.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564056|gb|EFB69593.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 226 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----FKKRSSAARN----L 174 L +G+++ + F L + V + A G L ++ S L Sbjct: 96 LAAGASGFLLKDATFPELLHGVRVVARGHALLAPEITQRLIGEFARQRISCPPDRSVDGL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ +IA +L ++ HTV ++ K+ +R QA+ A G + Sbjct: 156 TAREVEVLVLIARGLSNADIAARLSITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLV 215 >gi|182414312|ref|YP_001819378.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177841526|gb|ACB75778.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 212 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 12/136 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD-------- 159 L + + + + + + + I Sbjct: 77 LRREFGAVRVLVLSNYGSGDEVSAALQAGASGFIGKDTALAELLDAIRKIRAGDQVVPSE 136 Query: 160 -FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L + +S +L+ RE L L G G +++EI L + TV ++ + KL Sbjct: 137 VARRLASRITS---HLSTRELEVLALIGRGLSNKEIGAALNVVESTVKVHVTNILSKLGV 193 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA+ ++ G I Sbjct: 194 ADRTQAVLAGVKRGII 209 >gi|159899994|ref|YP_001546241.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159893033|gb|ABX06113.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 877 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 39/63 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+L G+++ EIAE+L +++ TV ++ + KL+A +R +A+A A Sbjct: 814 EPLSEREIEVLKLLALGHSNAEIAERLVIAIGTVKRHVNNLLGKLNARSRTEAVAIARDE 873 Query: 232 GYI 234 G + Sbjct: 874 GLL 876 >gi|111023173|ref|YP_706145.1| response regulator [Rhodococcus jostii RHA1] gi|110822703|gb|ABG97987.1| response regulator [Rhodococcus jostii RHA1] Length = 219 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 3/123 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + +G + + + A + Sbjct: 99 RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPQLDPE 155 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE+L +SV TV + + K NR A R Sbjct: 156 LDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHR 215 Query: 231 FGY 233 Sbjct: 216 RRI 218 >gi|21220639|ref|NP_626418.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256788218|ref|ZP_05526649.1| two component system response regulator [Streptomyces lividans TK24] gi|289772111|ref|ZP_06531489.1| two component system response regulator [Streptomyces lividans TK24] gi|5578847|emb|CAB51249.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289702310|gb|EFD69739.1| two component system response regulator [Streptomyces lividans TK24] Length = 227 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 G + + + R A +LT RE L G++++EIAE+L +S TV Sbjct: 135 GLIARFLAQQDTTDEDRDPARAERLESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVK 194 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL A +R Q + A G + Sbjct: 195 THVNRAMAKLGARDRAQLVVIAYESGLV 222 >gi|154707512|ref|YP_001424377.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|154356798|gb|ABS78260.1| response regulator [Coxiella burnetii Dugway 5J108-111] Length = 214 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 117 GIAFPVRLGF-HKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN 173 G P+RL G++ +S+ L + + I + L L K ++A Sbjct: 86 GDLLPMRLLEVGVRGFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSKTTTAATSP 145 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L L G +E IA++L ++ TVN++ KL N ++ I A++ Sbjct: 146 FKKLSDREMEVLLLLAKGKKAEVIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQ 205 Query: 231 FGYI 234 +G + Sbjct: 206 YGLV 209 >gi|284029937|ref|YP_003379868.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809230|gb|ADB31069.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 36/78 (46%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ LT+RE L G G ++ EIA +L +SV TV ++ + Sbjct: 138 RLLEQLRHRRSGPLPDKAALTDREREITMLVGRGLSNAEIATELFISVGTVKTHVANIQR 197 Query: 215 KLDAVNRIQAIAKAIRFG 232 KL A +R+ A A + G Sbjct: 198 KLSARSRVGIAAWAWQTG 215 >gi|206577986|ref|YP_002236599.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342] gi|288933581|ref|YP_003437640.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|206567044|gb|ACI08820.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342] gi|288888310|gb|ADC56628.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22] Length = 217 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 V+ + S+ LTERE L G T+ +IA L +S +TV +L + Sbjct: 137 VMHPAMYAADHASAPVENSPLTERECEILNELRCGATNLDIARALFISENTVRTHLYNVF 196 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL NR QA++ A Sbjct: 197 RKLSVKNRTQAVSWANEH 214 >gi|241554181|ref|YP_002979394.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863487|gb|ACS61149.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 214 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 5/136 (3%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVIT 158 ++ + I+ V G +++ ++ A E + V Sbjct: 79 PQARVVM--LSMHDSREYISSSVMHGAAGYILKDVSTDEIVSAIETVAGGGTYFSSGVFD 136 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + ++ + LT RE L L G +++EIAE LG++ T + + KL Sbjct: 137 ALM--GERAEEGSDPLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGI 194 Query: 219 VNRIQAIAKAIRFGYI 234 I A+ G + Sbjct: 195 ATTAGLIRYALDHGIV 210 >gi|254240101|ref|ZP_04933423.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192] gi|126193479|gb|EAZ57542.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192] Length = 901 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 890 QAIRRARELSLL 901 >gi|146302391|ref|YP_001196982.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156809|gb|ABQ07663.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 219 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L Y+ +EI+EKL +SV+TV + + KL+ N I + A++ Sbjct: 157 LSPREIEIVTLICLEYSGKEISEKLFISVNTVETHRKNIMKKLNIKNTIGLVKYALKNNL 216 Query: 234 I 234 I Sbjct: 217 I 217 >gi|308176141|ref|YP_003915547.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743604|emb|CBT74576.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 224 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 24/135 (17%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ------------VITDFLELFK 165 PV L +GY++ + II A A +Q +++ E ++ Sbjct: 91 YLVPV-LTAGASGYLV-----KDSEPDEIIRAIHAVHQGTAAISPSVSSDLVSAVREAYR 144 Query: 166 KRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 S + L T RE L+L G + EI++ L +S TV ++ VKLD Sbjct: 145 DNSGDIQELVYDLGITNREFEILKLLAKGLNNPEISKTLAISETTVKTHMAKIFVKLDVR 204 Query: 220 NRIQAIAKAIRFGYI 234 +R+QA+ A R G I Sbjct: 205 DRVQALVAATRMGLI 219 >gi|229102538|ref|ZP_04233243.1| Two-component protein Kinase [Bacillus cereus Rock3-28] gi|228680860|gb|EEL35032.1| Two-component protein Kinase [Bacillus cereus Rock3-28] Length = 592 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEQFDEQNETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y SA KL N+ +A+ KA+ G I Sbjct: 565 YASSAYTKLGVRNKEEAVQKALEIGII 591 >gi|77460927|ref|YP_350434.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf0-1] gi|77384930|gb|ABA76443.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 911 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 145 VIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + A C Q++ F + + + L+ RE + L+L G +++EI+++L +S Sbjct: 818 QLNAATAFCQQLLEHFPQASVRSQAESVTTEQLSSRELAVLRLIAQGCSNQEISDQLFIS 877 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +HTV + KL R QA+A+A G + Sbjct: 878 LHTVKTHASHINSKLGVERRTQAVARAKELGVL 910 >gi|296133351|ref|YP_003640598.1| two component transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296031929|gb|ADG82697.1| two component transcriptional regulator, LuxR family [Thermincola potens JR] Length = 226 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +E L L +G T++EIA+ L LS +T+ Y+ KL+ NR +A A A+R Sbjct: 154 LNPQERRILGLIAEGKTNKEIAQILTLSNNTIKNYVSGILSKLNFSNRAEAAAYAVRNNL 213 >gi|239945707|ref|ZP_04697644.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239992177|ref|ZP_04712841.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291449166|ref|ZP_06588556.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291352113|gb|EFE79017.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 232 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177 GYV+ + L GA +I +FL AR +TER Sbjct: 114 AGAAGYVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNFLDRAKDGEDLPARAITER 173 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G++S+EIAE L +SV TV + + KL +R++ AIR G I Sbjct: 174 EEEILKLVAEGHSSKEIAELLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 230 >gi|256378465|ref|YP_003102125.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922768|gb|ACU38279.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 V+ + + + A LT RE L+L G ++ EIA +L L+ TV ++G+ Sbjct: 132 VLASYRRFGRPAPANAPGELTGRELDVLRLMARGASNREIAGRLCLAETTVKTHVGAIFG 191 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A +R AI A G + Sbjct: 192 KLGARDRAAAIVFAYDSGIV 211 >gi|239825761|ref|YP_002948385.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239806054|gb|ACS23119.1| two component transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 199 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+ E + LQL + T+ EI+E L +S TV ++ S KLD +R+ A+ KA++ G Sbjct: 137 PLTKIELNILQLISEDKTNTEISELLNISRRTVEHHVSSILRKLDVDSRVGAVVKAMKLG 196 Query: 233 YI 234 + Sbjct: 197 IL 198 >gi|126665152|ref|ZP_01736135.1| ATP-dependent transcriptional regulator, MalT related, LuxR family protein [Marinobacter sp. ELB17] gi|126630522|gb|EBA01137.1| ATP-dependent transcriptional regulator, MalT related, LuxR family protein [Marinobacter sp. ELB17] Length = 970 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A ++ERE L+ G +++E+A+KL +S+HTV + KL +R QAI +A Sbjct: 905 PLAEPISEREKGVLECIARGLSNQEVADKLHISLHTVKTHARRINAKLGVKSRTQAIVRA 964 Query: 229 IRFGYI 234 G + Sbjct: 965 RELGVL 970 >gi|51597079|ref|YP_071270.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 32953] gi|108808226|ref|YP_652142.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Antiqua] gi|108811507|ref|YP_647274.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|149365098|ref|ZP_01887133.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CA88-4125] gi|162418673|ref|YP_001607184.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Angola] gi|165926835|ref|ZP_02222667.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. F1991016] gi|165935928|ref|ZP_02224498.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. IP275] gi|166011211|ref|ZP_02232109.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. E1979001] gi|166212574|ref|ZP_02238609.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. B42003004] gi|167422709|ref|ZP_02314462.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424621|ref|ZP_02316374.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467011|ref|ZP_02331715.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis FV-1] gi|170023626|ref|YP_001720131.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186896169|ref|YP_001873281.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930086|ref|YP_002347961.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CO92] gi|229838637|ref|ZP_04458796.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895703|ref|ZP_04510874.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides A] gi|229899203|ref|ZP_04514346.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. India 195] gi|229901771|ref|ZP_04516893.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|294504789|ref|YP_003568851.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Z176003] gi|51590361|emb|CAH22001.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 32953] gi|108775155|gb|ABG17674.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|108780139|gb|ABG14197.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Antiqua] gi|115348697|emb|CAL21643.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CO92] gi|149291511|gb|EDM41585.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CA88-4125] gi|162351488|gb|ABX85436.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Angola] gi|165916073|gb|EDR34680.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. IP275] gi|165921186|gb|EDR38410.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. F1991016] gi|165989889|gb|EDR42190.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. E1979001] gi|166206505|gb|EDR50985.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. B42003004] gi|166958416|gb|EDR55437.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167056503|gb|EDR66272.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750160|gb|ACA67678.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186699195|gb|ACC89824.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229681700|gb|EEO77794.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|229687605|gb|EEO79678.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. India 195] gi|229695003|gb|EEO85050.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701509|gb|EEO89537.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides A] gi|262362851|gb|ACY59572.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis D106004] gi|262366775|gb|ACY63332.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis D182038] gi|294355248|gb|ADE65589.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Z176003] gi|320014400|gb|ADV97971.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 209 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166 I V +I E+++E + + +L + Sbjct: 82 IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 141 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + LTERE LQ G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 142 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 201 Query: 227 KAIRF 231 + Sbjct: 202 MYLEN 206 >gi|268317984|ref|YP_003291703.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262335518|gb|ACY49315.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 218 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + E + LT+RE L L +GYTS EIAE+L +S TV + + KL Sbjct: 136 LLAQAEAPQDLRDPYETLTDRERQILHLTAEGYTSREIAERLFISPRTVEKHRENLMAKL 195 Query: 217 DAVNRIQAIAKAIRFGYI 234 D ++ + I A++ G + Sbjct: 196 DIHSQAELIHYAVQRGLV 213 >gi|205353364|ref|YP_002227165.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273145|emb|CAR38106.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628455|gb|EGE34798.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 207 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++E Sbjct: 63 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEGIRKGANGGKVF 122 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 123 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 182 Query: 211 SATVKLDAVNRIQAIAK 227 + KL+ +R+ A Sbjct: 183 NLLRKLNVRSRVAATIL 199 >gi|329946695|ref|ZP_08294107.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526506|gb|EGF53519.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 254 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE + L L G ++ +I E+L ++ TV +++ + K NR++ + Sbjct: 184 PAGPYDPLTGREEAVLALVCQGLSNAQIGERLHVAESTVKSHVKTILGKTGCHNRVELVI 243 Query: 227 KAIRFGYI 234 A+ G + Sbjct: 244 YALTTGLV 251 >gi|295105926|emb|CBL03469.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 214 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-----LFKKRSSAAR 172 + + +R G TSE L+ A + + + L ++ + + Sbjct: 91 LFYTLRGGAAGYVLKNSTSEELLSAVHAVAGGGSYIHPKMAALLTKQLVGAGEEEDRSYQ 150 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQL GYT++EI+E++ LSV TV A+ KL R ++ A+ Sbjct: 151 QLSNRELEILQLLAKGYTNKEISEQVYLSVKTVEAHRSKIYKKLGFKTRADLVSYALEHK 210 Query: 233 YI 234 + Sbjct: 211 LL 212 >gi|294055008|ref|YP_003548666.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293614341|gb|ADE54496.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 238 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ EL + + +LT RE +QL + Y+++EIA KLG+SV T + + Sbjct: 141 YFSPRIVEAMRELMVNGGQDDSLDSLTTREREIVQLIAESYSNKEIAAKLGMSVRTADTH 200 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ + AI + Sbjct: 201 RTNIMKKLNLHDVAALTRWAIANKLV 226 >gi|225020339|ref|ZP_03709531.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii ATCC 33806] gi|224946728|gb|EEG27937.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii ATCC 33806] Length = 233 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G ++ EIA+ L +S+ TV ++G K + +R+ A+ A Sbjct: 164 EPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSRDRVHAVLYAFDR 223 Query: 232 GYI 234 G I Sbjct: 224 GVI 226 >gi|322390963|ref|ZP_08064469.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321142338|gb|EFX37810.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 199 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 44/91 (48%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +++ H EL + + L+ +E + L+ G +++EIA++L LS Sbjct: 109 DLMATLHTVLAGQKEYSPELMEGILTHPNPLSPQEKAVLKEVAKGASNQEIADRLFLSNG 168 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 169 TIRNYMSTILTKLDAENRTEAAKIAHEKGWL 199 >gi|320106060|ref|YP_004181650.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924581|gb|ADV81656.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 207 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196 + E +I A + + + R + A LT RE+ L G ++ EIAE Sbjct: 107 DASGEELINAIQNVDRDLRYLPRVALDRLAERMPAVELTPRESEVLICITQGRSNREIAE 166 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L ++ TV ++ S K+ A +R QA A++ G + Sbjct: 167 QLRIAEKTVRIHVSSVLDKMGARDRTQATIYALQRGLV 204 >gi|253996413|ref|YP_003048477.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera mobilis JLW8] gi|253983092|gb|ACT47950.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Methylotenera mobilis JLW8] Length = 274 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I+ + + L + + +L+ERE + G T++EI L +S +TV Sbjct: 171 IDYILRKIKPLEQLDMLAEADGVSLSSLSEREIEVISWIKAGKTNQEIGMILSISQNTVK 230 Query: 207 AYLGSATVKLDAVNRIQAIAK 227 ++L KL+ R QA+A Sbjct: 231 SHLKRIFQKLNIGRRAQAVAL 251 >gi|225875065|ref|YP_002756524.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] gi|225792729|gb|ACO32819.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+I + + E I H + + +R LT RET L++ Sbjct: 103 AGARGYLIKDTTQEEI-LEAIAAVHAGSLHLPRHIAQRISERIGRQE-LTRRETEILEML 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EI G+S +T ++ S KL+ +R +A AI G I Sbjct: 161 AKGLTNKEIGRVFGISENTARNHVNSIIQKLEVSDRTEAATTAILRGII 209 >gi|209964999|ref|YP_002297914.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW] gi|209958465|gb|ACI99101.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW] Length = 214 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+R+ L+ +G ++++IA +LGLS TV ++ + L NR QA+ Sbjct: 150 PGMPALTQRQRDVLRCLREGKSNKQIAYELGLSEGTVKIHVTAVMRSLGVRNRTQAVI 207 >gi|297197337|ref|ZP_06914734.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714865|gb|EDY58899.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%) Query: 133 IFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDG 188 + + A + ++ A L + ++A LT RE + +G Sbjct: 114 LLAGIRTVAAGDSLLSPGATRTLITRFLAAPGLGTRLAAADDLTGLTGREREVMAWVAEG 173 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++E+IAEKL +S TV ++ A KL A +R Q + A + G + Sbjct: 174 HSNEKIAEKLFVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSGLV 219 >gi|320161029|ref|YP_004174253.1| putative two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994882|dbj|BAJ63653.1| putative two-component response regulator [Anaerolinea thermophila UNI-1] Length = 356 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +S +LTERE L L G T+ EIAE L +S +TV +L S KL+ R Sbjct: 286 IMGGKSDDLSSLTEREREVLLLLAQGLTNREIAEALVISNNTVKRHLKSIFSKLNIHTRS 345 Query: 223 QAIAK 227 A+AK Sbjct: 346 AAVAK 350 >gi|298482318|ref|ZP_07000505.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] gi|298271605|gb|EFI13179.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] Length = 255 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + NLT RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 190 PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQ 249 Query: 230 RFGYI 234 G + Sbjct: 250 ESGLL 254 >gi|229592530|ref|YP_002874649.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364396|emb|CAY52185.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 830 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + I E ++++ + + A L++RE LQL G ++ EIA++L + Sbjct: 736 QQAIRELRLRSPGLLSELGMEPQASTPGAVDNPLSQRELEVLQLIALGNSNLEIADRLFI 795 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 S+HTV + KL R QA+AKA G Sbjct: 796 SLHTVKTHARRIHSKLGVERRTQAVAKAKALGL 828 >gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 246 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 37/106 (34%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + +E + ++ + S +LT RE S L L Sbjct: 139 RRAATRQEAEEGTPDITALAGQIARIENMLKGKTGINLSPSPIKIDLTPREQSVLDLVAQ 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA +L SV V Y+ K +R + + A+ G Sbjct: 199 GLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 244 >gi|170756351|ref|YP_001781185.1| LuxR family transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169121563|gb|ACA45399.1| transcriptional regulator, LuxR family [Clostridium botulinum B1 str. Okra] Length = 865 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 41/72 (56%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 I + +++ + LTERE +++ +G ++++I ++L +S+ TV ++ + K Sbjct: 785 FIKNLIDIMEPEKVKGELLTEREKEVMEILFEGSSNKQIGKRLNISLATVKTHMINIYSK 844 Query: 216 LDAVNRIQAIAK 227 L NR+QA+ K Sbjct: 845 LQVSNRVQAVEK 856 >gi|157412510|ref|YP_001483376.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9215] gi|254526652|ref|ZP_05138704.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|157387085|gb|ABV49790.1| Regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9215] gi|221538076|gb|EEE40529.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 92 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L DG T++EIA KL +S TV+ ++ + K + NR+ + A+ G Sbjct: 15 GLSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNG 74 Query: 233 YIC 235 IC Sbjct: 75 KIC 77 >gi|123967708|ref|YP_001008566.1| LuxR family regulatory protein [Prochlorococcus marinus str. AS9601] gi|126695511|ref|YP_001090397.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9301] gi|123197818|gb|ABM69459.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. AS9601] gi|126542554|gb|ABO16796.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9301] Length = 92 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L DG T++EIA KL +S TV+ ++ + K + NR+ + A+ G Sbjct: 15 GLSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNG 74 Query: 233 YIC 235 IC Sbjct: 75 KIC 77 >gi|75910055|ref|YP_324351.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703780|gb|ABA23456.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 227 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G T++EIA L ++ TV ++ + KL+ +R QA+ A++ Sbjct: 158 HPLTGRELEILSLLAKGKTNQEIATALYITPGTVRVHVHAILHKLEVSDRHQAVVVALQK 217 Query: 232 GYI 234 I Sbjct: 218 RLI 220 >gi|326381419|ref|ZP_08203113.1| two component transcriptional regulator, LuxR family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199666|gb|EGD56846.1| two component transcriptional regulator, LuxR family protein [Gordonia neofelifaecis NRRL B-59395] Length = 209 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 1/103 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + + +++A V+ LT+RE L G G Sbjct: 104 GAELVAGVHRVADGDAVLDA-AVTRVVVDAMRARPADPGPDLSELTDREVQVLGGLGAGL 162 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ +IA +L + TV ++ +KL +R+QA A R G Sbjct: 163 SNAQIAGRLTIGEATVKTHVSRVLMKLGVQSRVQAAVLAARSG 205 >gi|298241116|ref|ZP_06964923.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554170|gb|EFH88034.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 938 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L L G ++++IAE L ++ TV ++ KL+A NR QA+A+A Sbjct: 869 PLLDPLSAREQDVLHLLARGASNQDIAEALVVTPGTVKHHITHILSKLEATNRTQAVARA 928 Query: 229 IRFGYI 234 G + Sbjct: 929 QALGLL 934 >gi|319441809|ref|ZP_07990965.1| putative NarL family two-component response regulator [Corynebacterium variabile DSM 44702] Length = 228 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A R+LT RE L+ G +++EIA L +S TV ++ KL +R+Q Sbjct: 158 EQAALKALRSLTPREHEILEQIATGRSNQEIAGTLFISEETVKTHVRKVLQKLSLRDRVQ 217 Query: 224 AIAKAIRFG 232 A+ A G Sbjct: 218 AVVFAYENG 226 >gi|311895697|dbj|BAJ28105.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 41/105 (39%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G I T + V T + + A +LT RET +L G Sbjct: 114 GAAIRTVHTGEAVVAPRLLTRLISTYVRTPATPAVPRPAPAPADLTPRETEVWRLIATGL 173 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ IA L LS TV ++ + KLD +R QA+ A G + Sbjct: 174 DNDAIAAALDLSRSTVKNHITALFAKLDVRDRAQAVIAAYESGLV 218 >gi|226355186|ref|YP_002784926.1| LuxR family transcriptional regulator [Deinococcus deserti VCD115] gi|226317176|gb|ACO45172.1| putative Transcriptional regulator, LuxR family [Deinococcus deserti VCD115] Length = 762 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 6/163 (3%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 L + + + + ++ S + + F + Sbjct: 594 LLRYVLLHQMAFHARDAGQLSLAARMVGCSEAMRASTGEPWDVCFAPHVRRLDTALRTAM 653 Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 E + + + + ++ + ++ + LT RE L+L G + Sbjct: 654 GERYEVCRQEGSALRLEDLVPDVAAMLENAVQTTYAETRVT-PLTGREQDVLRLLAQGIS 712 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + IA++L +S TV+ ++ S KL NR++ A+R G Sbjct: 713 DKRIAQQLNISAATVSKHVSSMLSKLGVHNRVELARWALRNGL 755 >gi|319940792|ref|ZP_08015131.1| NarL protein [Sutterella wadsworthensis 3_1_45B] gi|319805674|gb|EFW02455.1| NarL protein [Sutterella wadsworthensis 3_1_45B] Length = 220 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G +++EIA L L+ TV ++ S KL+ +R+QA AI Sbjct: 157 LTRRERQTLAWLARGVSNKEIARALNLAESTVKVHVQSILRKLNLSSRVQAAIYAIEHKI 216 >gi|290511352|ref|ZP_06550721.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289776345|gb|EFD84344.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 217 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 V+ + S+ LTERE L G T+ +IA L +S +TV +L + Sbjct: 137 VMHPAMYAADHASAPVENSPLTERECEILNELRCGATNLDIARALFISENTVRTHLYNVF 196 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL NR QA++ A Sbjct: 197 RKLSVKNRTQAVSWANEH 214 >gi|254519325|ref|ZP_05131381.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226913074|gb|EEH98275.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G ++EIAEKL LS TV Y+ S K++ +R+QA AIR Sbjct: 158 LTNRELNILYEISKGLKNKEIAEKLFLSEKTVKNYITSIFKKIEVEDRVQATIYAIRNNI 217 >gi|197658985|emb|CAR47858.1| putative DNA binding response regulator [Rhodococcus sp. PY11] Length = 222 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA G T+ +IA KL +SV TV +L + KLDA +R A+A+A+R G Sbjct: 161 LTPRELDVLRLAATGLTTSQIAGKLHVSVPTVKTHLRNTYDKLDASDRTAAVAQALRLGL 220 Query: 234 I 234 + Sbjct: 221 L 221 >gi|296389855|ref|ZP_06879330.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110448|ref|ZP_07796333.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882835|gb|EFQ41429.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 856 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 785 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 844 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 845 QAIRRARELSLL 856 >gi|85711562|ref|ZP_01042620.1| two-component system regulatory protein [Idiomarina baltica OS145] gi|85694714|gb|EAQ32654.1| two-component system regulatory protein [Idiomarina baltica OS145] Length = 212 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT++E + L+L G +++EIA+ L S T+ + S KL +R +A+ KAI Sbjct: 150 EPLTDKELAVLRLMAAGLSNQEIADSLFKSTGTIKNQVSSIMAKLGVHDRTRAVLKAIDL 209 Query: 232 GYI 234 G + Sbjct: 210 GVL 212 >gi|297196575|ref|ZP_06913973.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|297153289|gb|EDY67145.2| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|302607736|emb|CBW45649.1| response regulator [Streptomyces pristinaespiralis] Length = 249 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 29/64 (45%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L G ++ EIA+ L LS HTV ++ + KL NR+ A Sbjct: 185 PPEQLTGRECQILDLVARGLSNTEIAQSLTLSEHTVKTHVQNLLNKLRLRNRVHVAIYAF 244 Query: 230 RFGY 233 G Sbjct: 245 ETGL 248 >gi|302865544|ref|YP_003834181.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302568403|gb|ADL44605.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 216 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A Q++ + R AA LTERE L+L G ++ EIA +L + V TV ++G Sbjct: 130 AAIRQLVDTYGRRDGDRLRAA-RLTEREAEVLRLMAAGLSNPEIAARLVVGVETVKTHVG 188 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R QA+ A G++ Sbjct: 189 NVLAKLGVRDRTQAVVAAYESGFV 212 >gi|78062060|ref|YP_371968.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77969945|gb|ABB11324.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 889 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 ++ ++ L E++ A + + ++R Sbjct: 761 VQHRQGHTRLALRTLQGVRETASAGGCRRALLDEGAELVALLDQAPDAEMPHTAQASEQR 820 Query: 168 SSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 S A L++RE L+L G ++ EI+EKL LS +TV +L + +KLD NR QA Sbjct: 821 SPTAAWYGALSQREQEILRLLCSGASNREISEKLFLSENTVKFHLKNVYLKLDVKNRAQA 880 Query: 225 IAKA 228 I KA Sbjct: 881 ILKA 884 >gi|312138632|ref|YP_004005968.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311887971|emb|CBH47283.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 205 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L+++ L+ RE L L G ++ IA++L +S TV ++L A KL Sbjct: 130 AQRLYRRMQQPRVELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVD 189 Query: 220 NRIQAIAKAIRFGYI 234 +R A+A A G I Sbjct: 190 SRTAAVAAARERGLI 204 >gi|288563091|pdb|3KLN|A Chain A, Vibrio Cholerae Vpst gi|288563092|pdb|3KLN|B Chain B, Vibrio Cholerae Vpst gi|288563093|pdb|3KLN|C Chain C, Vibrio Cholerae Vpst gi|288563094|pdb|3KLN|D Chain D, Vibrio Cholerae Vpst gi|288563095|pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563096|pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563097|pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563098|pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp Length = 225 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + + I + +S LT+RE ++L G G ++ EIA+KL +S Sbjct: 128 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 187 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 188 ENTVKTHLHNVFKKINAKNRLQALIWA 214 >gi|315502094|ref|YP_004080981.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315408713|gb|ADU06830.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 216 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A Q++ + R AA LTERE L+L G ++ EIA +L + V TV ++G Sbjct: 130 AAIRQLVDTYGRRDGDRLRAA-RLTEREAEVLRLMAAGLSNPEIAARLVVGVETVKTHVG 188 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R QA+ A G++ Sbjct: 189 NVLAKLGVRDRTQAVVAAYESGFV 212 >gi|261212992|ref|ZP_05927276.1| transcriptional regulator VpsT [Vibrio sp. RC341] gi|260838057|gb|EEX64734.1| transcriptional regulator VpsT [Vibrio sp. RC341] Length = 224 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + + I + +S LT+RE ++L G G ++ EIA+KL +S Sbjct: 127 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 186 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|256380511|ref|YP_003104171.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924814|gb|ACU40325.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 216 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 19/162 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + ++ ++ L +A V VI ++++ ++ Sbjct: 55 LDVHMPDGGGAEVLRQVRKALPEVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSQELV 114 Query: 148 EA--------HGACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSE 192 A ++ L+ F R AA LT RE L+L GY + Sbjct: 115 RAVVRVAEGDAVFSPRLAGFVLDAFADRPGAAPISDPELDLLTPRERDVLRLLARGYAYK 174 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L +SV TV ++ S K NR + A + Sbjct: 175 EIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 216 >gi|238061007|ref|ZP_04605716.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882818|gb|EEP71646.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 231 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 18/161 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + + +A V +I ++ + + Sbjct: 71 LDVHMPDGGGRAVLESMRRTHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELA 130 Query: 148 EAHGA--------CYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193 A ++ L+ F R LT RE L+L GY +E Sbjct: 131 AAIRRVADGDAVFSPRLAGFVLDAFAARPDAPVADPELDQLTNREREVLRLLARGYAYKE 190 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA++L +S+ TV ++ + KL NR + A + Sbjct: 191 IAKELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 231 >gi|229505909|ref|ZP_04395418.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286] gi|229510237|ref|ZP_04399717.1| transcriptional regulator VpsT [Vibrio cholerae B33] gi|229514364|ref|ZP_04403825.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21] gi|229517633|ref|ZP_04407078.1| transcriptional regulator VpsT [Vibrio cholerae RC9] gi|229522476|ref|ZP_04411892.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80] gi|229526498|ref|ZP_04415902.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426] gi|229528149|ref|ZP_04417540.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)] gi|229605441|ref|YP_002876145.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236] gi|229334511|gb|EEN99996.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)] gi|229336656|gb|EEO01674.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426] gi|229340461|gb|EEO05467.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80] gi|229345669|gb|EEO10642.1| transcriptional regulator VpsT [Vibrio cholerae RC9] gi|229348344|gb|EEO13302.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21] gi|229352682|gb|EEO17622.1| transcriptional regulator VpsT [Vibrio cholerae B33] gi|229356260|gb|EEO21178.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286] gi|229371927|gb|ACQ62349.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236] Length = 214 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + + I + +S LT+RE ++L G G ++ EIA+KL +S Sbjct: 117 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 176 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 177 ENTVKTHLHNVFKKINAKNRLQALIWA 203 >gi|254284578|ref|ZP_04959545.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|150425363|gb|EDN17139.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] Length = 224 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + + I + +S LT+RE ++L G G ++ EIA+KL +S Sbjct: 127 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 186 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|297579999|ref|ZP_06941926.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535645|gb|EFH74479.1| transcriptional regulator [Vibrio cholerae RC385] gi|327485927|gb|AEA80333.1| Transcriptional regulator VpsT [Vibrio cholerae LMA3894-4] Length = 224 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + + I + +S LT+RE ++L G G ++ EIA+KL +S Sbjct: 127 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 186 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|15601705|ref|NP_233336.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586693|ref|ZP_01676477.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121726414|ref|ZP_01679688.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147672305|ref|YP_001215128.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153212168|ref|ZP_01947963.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|153801409|ref|ZP_01955995.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|153818303|ref|ZP_01970970.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153821011|ref|ZP_01973678.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|153824729|ref|ZP_01977396.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|153827751|ref|ZP_01980418.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|227812518|ref|YP_002812528.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|254224744|ref|ZP_04918360.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|254850118|ref|ZP_05239468.1| transcriptional regulator [Vibrio cholerae MO10] gi|255746307|ref|ZP_05420254.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101] gi|262158188|ref|ZP_06029306.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1] gi|262169213|ref|ZP_06036906.1| transcriptional regulator VpsT [Vibrio cholerae RC27] gi|262191930|ref|ZP_06050097.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93] gi|9658390|gb|AAF96848.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549121|gb|EAX59156.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121631162|gb|EAX63537.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|124116720|gb|EAY35540.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|124123075|gb|EAY41818.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|125622807|gb|EAZ51125.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|126511116|gb|EAZ73710.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126521385|gb|EAZ78608.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146314688|gb|ABQ19228.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|148876596|gb|EDL74731.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|149741685|gb|EDM55714.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|227011660|gb|ACP07871.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227015599|gb|ACP11808.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|254845823|gb|EET24237.1| transcriptional regulator [Vibrio cholerae MO10] gi|255736061|gb|EET91459.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101] gi|262022494|gb|EEY41202.1| transcriptional regulator VpsT [Vibrio cholerae RC27] gi|262030066|gb|EEY48712.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1] gi|262032164|gb|EEY50735.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93] Length = 224 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + + I + +S LT+RE ++L G G ++ EIA+KL +S Sbjct: 127 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 186 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|328551897|gb|AEB22389.1| two-component response regulator [Bacillus amyloliquefaciens TA208] Length = 214 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +++ LT RE + +G +++ IA L L+ TV Y+ KL+ NR + Sbjct: 146 EEPKTNLTEILTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVSNRTE 205 Query: 224 AIAK 227 Sbjct: 206 LTLY 209 >gi|291442172|ref|ZP_06581562.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345067|gb|EFE72023.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + ++ + + ++ + K + + LTERET L L Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFAKQRPAVRGKPALRLKGLTERETEVLTLVA 172 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA+ L L+ TV ++ KLD +R QA+ A G + Sbjct: 173 RGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220 >gi|257067250|ref|YP_003153505.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558068|gb|ACU83915.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 213 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 9/139 (6%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 + ++ +A + E +I A G + Sbjct: 74 TRKVRARHPDVQVLAVTTFDAEADIVGALEAGATGYVLKDSPTEALIAAVGEAAAGRSVL 133 Query: 161 -----LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L + +S A L+ RE L+ G T+ E+A++L +S TV +L K Sbjct: 134 SPEVQQRLVARMTSPATALSPREAEILEALATGATNREVAKRLFISESTVKTHLVHLYEK 193 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R A+ A I Sbjct: 194 LGVDSRTAALRVARERRLI 212 >gi|296131165|ref|YP_003638415.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022980|gb|ADG76216.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 254 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A LT RE +L G ++ E AE+L L TV +++ S KL +R+Q Sbjct: 154 MEATDGPAE-LTARERDVFRLLVQGLSTAEAAERLTLGDSTVKSHVQSLYRKLGVRDRVQ 212 Query: 224 AIAKAIRFGYI 234 A+ A G + Sbjct: 213 AVIYAYEHGLV 223 >gi|297561045|ref|YP_003680019.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845493|gb|ADH67513.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 247 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195 ++A + A ++I++F L + AR L T+RE L L G ++ E+A Sbjct: 133 TVVAAGDALLAPSVTRRLISEFARLPEPGRPPARALDGVTDREVEVLGLIARGLSNTELA 192 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L LS+ TV ++G KL A +R Q + A G + Sbjct: 193 EHLHLSLATVKTHIGRLRAKLGARDRAQLVITAYETGLV 231 >gi|296139134|ref|YP_003646377.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027268|gb|ADG78038.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 222 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 10/130 (7%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC----------YQVITDFLELF 164 L G+V+ S L V + A G Q + Sbjct: 89 RDDDLLSAALRAGVAGFVLKDSPAEELIRAVRLVAAGEAVLDPAVTGRVLQTYRAARQPA 148 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R+ A LT RE L L G G ++++IA +L +S+ TV +++GS KL NR +A Sbjct: 149 TTRAGAVDPLTAREVDVLGLVGRGLSNDDIAAELVISIVTVKSHIGSIFTKLGVRNRAEA 208 Query: 225 IAKAIRFGYI 234 I A G + Sbjct: 209 IVWAFDNGVV 218 >gi|225022693|ref|ZP_03711885.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305682229|ref|ZP_07405033.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|224944601|gb|EEG25810.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305658702|gb|EFM48205.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 223 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 S A LT RET L+L G T++EIA+ +S+ TV ++ +K ++ +R+ Sbjct: 141 AAPTPSPAVAELTPRETVILRLIALGLTNQEIADHEYVSMATVKTHVRHILMKTNSRDRV 200 Query: 223 QAIAKAIRFGYI 234 A+ A R G + Sbjct: 201 HAVLFAYRTGVV 212 >gi|171778727|ref|ZP_02919823.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282684|gb|EDT48108.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 198 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S L+ +E LQL G ++++IA+ L LS TV Y S KL A NR Sbjct: 126 ELMESMISQDNPLSPQEKRILQLISLGKSNQDIADTLYLSNGTVRNYTSSIFNKLSANNR 185 Query: 222 IQAIAKAIRFGYI 234 ++A A G++ Sbjct: 186 VEAARIAKDKGWL 198 >gi|111023055|ref|YP_706027.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822585|gb|ABG97869.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 208 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 42/107 (39%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S + V A G L ++ LT RE L L Sbjct: 98 DAGAIGYLLKDSTPQEIFAAVRGAAAGQSVLSPPVASRLLQQMQRPEEALTPREAELLTL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +G T++E+ + L +S TV +L KL R A++ A+R Sbjct: 158 MAEGMTNKELGKALFISEATVKTHLAHIYAKLGVDTRAAAVSVALRR 204 >gi|305680025|ref|ZP_07402835.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305660645|gb|EFM50142.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 232 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G ++ EIA+ L +S+ TV ++G K + +R+ A+ A Sbjct: 163 EPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSRDRVHAVLYAFDR 222 Query: 232 GYI 234 G I Sbjct: 223 GVI 225 >gi|291539797|emb|CBL12908.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis XB6B4] Length = 215 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 SS +LT RE L++ G ++EIAE L +S TV ++ + K+ +R Sbjct: 141 RDSDSSKIESLTRRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRT 199 >gi|284030307|ref|YP_003380238.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809600|gb|ADB31439.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 213 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 4/114 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA----RNLTERET 179 L GY+ + + + + A G L S A LT RET Sbjct: 97 LRAGARGYLTKDAGRVEIGAALRATAAGQSTFDPEVARRLVAGLSPAPAGSKDGLTARET 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++ EIA L + TV ++ + K+ A +R +A+ A R G Sbjct: 157 EVLRLIAQGLSNGEIAGLLFIGEATVKTHINNTFAKIGARHRAEAVRYAYRHGI 210 >gi|118468464|ref|YP_885258.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169751|gb|ABK70647.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 215 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L E + A + + LT RE L+L +GY++ EIA Sbjct: 117 RATLRGEPFLYAGAITALIRDFLHRARQGGEPPDSILTPREEEVLKLIAEGYSTREIAAT 176 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S TV+ + + KL +R+ AIR G I Sbjct: 177 LTISAKTVDRHRTNILAKLGLRDRLALTRYAIRAGLI 213 >gi|116255424|ref|YP_771257.1| putative two-component response regulator transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260072|emb|CAK03171.1| putative two-component response regulator transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 210 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E I A + + + L +R+ A L+ RE + G +++IA LG+S Sbjct: 112 EAIDRALIQYERQLAEHDRLQAQRTLVA-GLSPREAEVFRFLIRGRLNKQIAYALGISER 170 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV + KL + +A++ A G I Sbjct: 171 TVKVHRHQVMDKLGVRSLAEAVSIAANIGLI 201 >gi|159898988|ref|YP_001545235.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159892027|gb|ABX05107.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 860 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 39/96 (40%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L L +I + L + + +T RE L+ G + IAE L Sbjct: 764 LDLQAGLIPLLQQLPSSPLVLRLLHHNRLETLDLAITPREHEILRYLAAGLGNRAIAEAL 823 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T+ ++ + +KLD NR AI KA G I Sbjct: 824 VIAESTLKRHISNLYLKLDVHNRTAAIVKAREQGLI 859 >gi|297626942|ref|YP_003688705.1| Two-component system, regulatory protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922707|emb|CBL57284.1| Two-component system, regulatory protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 219 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 20/151 (13%) Query: 103 QLSVRLEGGLLPFAGIAFPVR-----LGFHKNGYVIFTSEFLMLA------NEVIIEAHG 151 + G P + L + G F + V AH Sbjct: 67 RRIREARGPEGPRILVLTTFDQDENVLAAMRAGANGFLGKGAGPDELAEGIRRVAAGAHA 126 Query: 152 ACYQVITDFLE---------LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 I + ++ LT RE ++L +G + EI ++ +S Sbjct: 127 LSDNAIGALVSHVSDPHAVPPDPDKAKLFEGLTPRELEVVRLVVEGLDNAEIGRRVFISP 186 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T ++ A K+ A +R Q ++ A++ G Sbjct: 187 FTAKTHVNRAMAKVGARDRAQLVSLAVQAGI 217 >gi|254464296|ref|ZP_05077707.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] gi|206685204|gb|EDZ45686.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] Length = 251 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 70/229 (30%), Gaps = 12/229 (5%) Query: 11 SSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNIL 68 + S +EL + + + L N+ + + Sbjct: 13 AQSTEELWCEHVKQMA-AFGFDRLIYGHTRFRTETSLGDPEDFVILSNHPNEYLNGFLKE 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFPVRLG 125 L W+ +++ + L AG Sbjct: 72 GLYLSAPMLRWALENEGAGSWRIVEDMAATGTLTPEARKVHEFNQKLDMTAGYTISFHSV 131 Query: 126 FHKN-GYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERET 179 ++ G + ++ +++ G ++ + L R+LT+R+ Sbjct: 132 SNRYKGAISLAAQPGMSQDDVDMLWAERGEDIVLMNNVAHLKILTLPYASPKRSLTKRQR 191 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LQ GDG T+++IA +GL+ T+ +L A L QA+ KA Sbjct: 192 EVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLAVETTAQAVLKA 240 >gi|206580792|ref|YP_002239858.1| monoamine regulon transcriptional regulator [Klebsiella pneumoniae 342] gi|206569850|gb|ACI11626.1| monoamine regulon transcriptional regulator [Klebsiella pneumoniae 342] Length = 227 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 12/220 (5%) Query: 10 KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K+S + R L I I + Y +N+ L + LHN ++ Sbjct: 6 KASRNDAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPESYILHNIPDNTHQQYLE- 59 Query: 69 IETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D L HF+ + + + + + +R Sbjct: 60 NFQPLDPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERR 116 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + ++E A V + ++ LT +E + + + Sbjct: 117 IIAGISLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEDDDLPAILTAKEREIVGMVRE 175 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G +++ IA +L +S+ TV +L + K + VNR + +++ Sbjct: 176 GASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215 >gi|21224963|ref|NP_630742.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3334798|emb|CAA19946.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 V E + LT RE L+L G ++ EIA L +S HTV ++ Sbjct: 133 LVADIVRRRREEAAADVTPQRLEVLTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHV 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+QA+ A G + Sbjct: 193 SNVLGKLGLRDRVQAVICAYETGLV 217 >gi|88859041|ref|ZP_01133682.1| putative regulator in two-component regulatory system; LuxR family protein [Pseudoalteromonas tunicata D2] gi|88819267|gb|EAR29081.1| putative regulator in two-component regulatory system; LuxR family protein [Pseudoalteromonas tunicata D2] Length = 217 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ +LT ++ L +G +++IA +L +S TV A++ + KL NR QA+ Sbjct: 143 GIATQIASLTPQQYKVLSYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQAV 202 Query: 226 AKAIRFGY 233 A + Sbjct: 203 LIASKLQL 210 >gi|222149995|ref|YP_002550952.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736977|gb|ACM37940.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 248 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LT 175 + +G + V+ + +++ + + + + L RS A LT Sbjct: 134 SVMFNVGRTRLALVMLLPDGFVISPDRLRDVGLLAAYCV----SLSTGRSQKADRDFELT 189 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 190 ERELECLFWIAEGKTSDEIATILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 248 >gi|107101190|ref|ZP_01365108.1| hypothetical protein PaerPA_01002222 [Pseudomonas aeruginosa PACS2] Length = 856 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 785 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 844 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 845 QAIRRARELSLL 856 >gi|15596956|ref|NP_250450.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116049709|ref|YP_791486.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|9947737|gb|AAG05148.1|AE004601_13 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115584930|gb|ABJ10945.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 901 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 890 QAIRRARELSLL 901 >gi|269139570|ref|YP_003296271.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202] gi|267985231|gb|ACY85060.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202] gi|304559458|gb|ADM42122.1| Transcriptional regulator CsgD [Edwardsiella tarda FL6-60] Length = 210 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 4/146 (2%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT---SEFLMLAN 143 II+ ++ + + + I V + + F + Sbjct: 59 IIFDAMLLDGDPAQRSSWLEAIFNQRVGRRIILINVNTHDEGLAWHQHGNIIAAFPAKTH 118 Query: 144 EVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + V E + LT RE L+ G ++ +I+ L +S Sbjct: 119 QQALIRRLRTLLVAAQEDEPGEAIPVPRLTRLTLRELEVLKAMQQGASNLDISRILYISE 178 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV ++ + K+ NRIQA+ A Sbjct: 179 NTVRTHIYNIFKKIAVKNRIQAVKWA 204 >gi|302561047|ref|ZP_07313389.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302478665|gb|EFL41758.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 227 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R+ +LT RE L G++++EIAE+L +S TV ++ A KL A +R Q Sbjct: 152 DPARAERLDSLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQ 211 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 212 LVVTAYESGLV 222 >gi|239942450|ref|ZP_04694387.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988915|ref|ZP_04709579.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445905|ref|ZP_06585295.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348852|gb|EFE75756.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 221 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 4/135 (2%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + + V L + Sbjct: 84 FDLDEYAYDGLRAGASGFLVKDALPEELLAGIRAVAAGDAVVAPTLTRRLLDAYVHHLPV 143 Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + LTERE L + G G+++ EIA +L L+ TV ++ K A Sbjct: 144 VPGARATSDPRITALTEREREILTVIGQGWSNTEIAARLHLAESTVKTHVTRILAKTGAR 203 Query: 220 NRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 204 DRVQAVILAYDTRLV 218 >gi|291303089|ref|YP_003514367.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572309|gb|ADD45274.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ E+A +L LS TV ++ KL +R+QA+ A G Sbjct: 155 ALTPRELEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLQLRDRVQAVIVAYETG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|256374666|ref|YP_003098326.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918969|gb|ACU34480.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 209 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + L+ RE L+L G G ++ EI +L + TV +L KLD +R Sbjct: 135 SVAGRLVRRTPALSPREVEVLRLVGRGLSNAEIGRQLFIGEATVKTHLLRVFSKLDVSDR 194 Query: 222 IQAIAKAIRFGYI 234 A+ A+R G + Sbjct: 195 TAAVTTAMRLGLL 207 >gi|218892289|ref|YP_002441156.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218772515|emb|CAW28297.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 901 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 890 QAIRRARELSLL 901 >gi|212695640|ref|ZP_03303768.1| hypothetical protein ANHYDRO_00157 [Anaerococcus hydrogenalis DSM 7454] gi|212677313|gb|EEB36920.1| hypothetical protein ANHYDRO_00157 [Anaerococcus hydrogenalis DSM 7454] Length = 198 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ G + ++IA KL +S T+ ++ + KL A N ++A KA+ Sbjct: 131 ADPLTKREIEVLEELIKGSSKKDIAAKLFISERTLYNHIANIYDKLRAKNIVEAYNKAME 190 Query: 231 FGYI 234 GYI Sbjct: 191 LGYI 194 >gi|295836117|ref|ZP_06823050.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197695212|gb|EDY42145.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 259 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L G ++ +IA L +S TV ++ + K +R QA+ A Sbjct: 187 PPDGLTAREVEVLVLIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAY 246 Query: 230 RFGYI 234 G + Sbjct: 247 LHGMV 251 >gi|255526737|ref|ZP_05393639.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296187028|ref|ZP_06855428.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|255509572|gb|EET85910.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296048466|gb|EFG87900.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] Length = 213 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 I + LT RE L G G ++++I++KL +S +TV + Sbjct: 123 YFDSYFIDCMVRENSIEPEKIEQLTAREKEILCEIGKGMSNQQISKKLCISENTVKKHNN 182 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R Q A + G + Sbjct: 183 HIFDKLNMKDRTQLALYANKCGML 206 >gi|206563380|ref|YP_002234143.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198039420|emb|CAR55386.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 215 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 36/78 (46%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L K + LT RE L+ +G ++ IA LG++ TV +LG+ K Sbjct: 133 AQRMIGALRKPPRNPFAALTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSK 192 Query: 216 LDAVNRIQAIAKAIRFGY 233 L +R QA+A A R G Sbjct: 193 LHLSDRTQAVALAWREGL 210 >gi|254234854|ref|ZP_04928177.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719] gi|126166785|gb|EAZ52296.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719] Length = 901 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 890 QAIRRARELSLL 901 >gi|83858980|ref|ZP_00952501.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] gi|83852427|gb|EAP90280.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] Length = 200 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +E + +A Q EL + SA LT RE L+L +G +++EIA L Sbjct: 105 DAPSEELADAVRRVAQGQRAIASELAETAWSAPVVLTARERDILRLVEEGKSNKEIARLL 164 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV YL AT KL A NRI+A A G++ Sbjct: 165 NLSPGTVRNYLAEATQKLGAANRIEAFQIARENGWL 200 >gi|262204133|ref|YP_003275341.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087480|gb|ACY23448.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 216 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ +++ L V A G V+ ++ + + LTERE Sbjct: 99 AGATGYLVKSAQRSELVAAVHATADGQAVFTPGLAGLVLGEYRRIARSPGPETPVLTERE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T L+ G +S +IA +L +S TV ++G+ KL NR++ AI G Sbjct: 159 TQVLREVAKGLSSRQIANRLAISPRTVENHVGATLRKLQLANRVELTRYAIEHGL 213 >gi|77459645|ref|YP_349152.1| sensor protein [Pseudomonas fluorescens Pf0-1] gi|77383648|gb|ABA75161.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 496 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194 EV+ +A +I + K S + LT RE L L +G +EI Sbjct: 389 AAIEEVMKDASWFSRTLIEKLANVKKVNSPQLPSVSFTDLTARERDVLALICEGLADKEI 448 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L L+ +TV ++ + KLD +R +AI A G Sbjct: 449 AARLKLAPNTVRNHVATVYSKLDVHSRSEAIVWARERGL 487 >gi|21224488|ref|NP_630267.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|4007711|emb|CAA22396.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 260 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTERE 178 GYV+ + L GA +I ++L + ++ LT RE Sbjct: 143 GACGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRHGEETSDHILTPRE 202 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G++S+EIAE L +S+ TV + + KL +R++ AIR G I Sbjct: 203 EEVLKLVAEGHSSKEIAEILFISIKTVQRHRANLLQKLGLRDRLELTRYAIRAGLI 258 >gi|229096445|ref|ZP_04227417.1| Two-component protein Kinase [Bacillus cereus Rock3-29] gi|228687007|gb|EEL40913.1| Two-component protein Kinase [Bacillus cereus Rock3-29] Length = 592 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEQFDEQNETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y SA KL N+ +A+ KA+ G I Sbjct: 565 YASSAYTKLGVRNKEEAVQKALEIGII 591 >gi|226314788|ref|YP_002774684.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226097738|dbj|BAH46180.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 856 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++ + S A LTERE+ L L G+G ++ +IA+KL L++ TV ++ KL N Sbjct: 782 LDIQIRVSPALEKLTERESEVLALIGEGLSNSDIADKLHLTLGTVKGHVHQIFSKLQVKN 841 Query: 221 RIQAIAKAIR 230 R QAI + Sbjct: 842 RAQAIVRLRE 851 >gi|37521252|ref|NP_924629.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212248|dbj|BAC89624.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 210 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 51/156 (32%), Gaps = 11/156 (7%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----LMLAN 143 + + V + I + Sbjct: 54 DVALMDLRMPAMDGVEAIVAIRSEFPDSRIIVLTTYDTDEDIYRGLRAGAMAFLLKEAPT 113 Query: 144 EVIIEAHGACYQVITD-----FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 E ++EA A + +L + S+ LT RE L L G T++EIA L Sbjct: 114 EELVEAIRAVHAGHKRIPQQVAAKLANRLSNP--ELTARELEVLHLVVKGQTNKEIAASL 171 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV A++ + K+ A +R QA AIR G + Sbjct: 172 FIGEGTVRAHMNNILAKMGAHDRTQAATLAIRRGLV 207 >gi|21220978|ref|NP_626757.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|6752360|emb|CAB69738.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 227 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 154 YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I FL L+ERE L L G + EIAE LGLS T ++ Sbjct: 130 ARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVS 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+A +R Q + A G + Sbjct: 190 RIMGKLEARDRAQLVIVAYESGLV 213 >gi|298249444|ref|ZP_06973248.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547448|gb|EFH81315.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G T+ E+AE+L +S TV +L + +L +R QA+ G Sbjct: 175 RLTRREQEILRLVATGATNREVAERLVISEGTVKNHLANLFSRLGLRDRTQAVLYTREQG 234 Query: 233 YI 234 + Sbjct: 235 LL 236 >gi|226364986|ref|YP_002782769.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243476|dbj|BAH53824.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 223 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + L + G++ S Sbjct: 63 DVALLDYRMPELDGSQVAAAVRRAELATRVLLLSAHDESAIVYHALQEGAAGFLPKESTR 122 Query: 139 LMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G + E+ ++ A L+ RE L L G + I Sbjct: 123 AEIVKAVLDCAQGRDVLPASLAVGLAGEVRRRSEPAGPVLSGREKEVLALIARGQSIPTI 182 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L L+ TV ++ KL +R A+A+A+R G + Sbjct: 183 AGELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRGLL 222 >gi|222098824|ref|YP_002532882.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229142095|ref|ZP_04270620.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|221242883|gb|ACM15593.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228641384|gb|EEK97690.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 189 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|120406465|ref|YP_956294.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959283|gb|ABM16288.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA-RNLT 175 L +G+V+ S L V A G +V+ + ++ A +LT Sbjct: 97 LRAGASGFVLKDSPAEELIRAVRAVARGDGFLDPSVTARVLDTYRTAAEEPVPEAVDDLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++ EIA++L +S TV +++G +KL +R AI A + G + Sbjct: 157 PRELDVLRLMAKGRSNSEIADELVISGVTVKSHIGRIFLKLRLRDRAAAIVYAYQKGIV 215 >gi|330504873|ref|YP_004381742.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328919158|gb|AEB59989.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 913 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + A Q + + E+ + L+ RE + LQL G +++EI+E+L +S+H Sbjct: 824 REALLAQLPAQQHVDESSEIEHE--PLTEKLSGRELAVLQLIARGCSNQEISERLFISLH 881 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV + KL R QA+A+A G + Sbjct: 882 TVKTHARHINSKLGVERRTQAVARAKGLGLL 912 >gi|300694462|ref|YP_003750435.1| nitrate/nitrite response regulator in two-component regulatory system with narx, regulates anaerobic respiration and fermentation (luxr/uhpa familiy) [Ralstonia solanacearum PSI07] gi|299076499|emb|CBJ35824.1| Nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum PSI07] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 2/103 (1%) Query: 133 IFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + A E +I V + + LT RE +Q G + Sbjct: 112 LVAGVRKAAAGEPVIAESMTAKLVAHFRAPERAAQPEAIPVERLTARERDIVQGLVRGDS 171 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++EIA L ++ TV ++ + KL+ +R+Q A+ G Sbjct: 172 NKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214 >gi|269956425|ref|YP_003326214.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305106|gb|ACZ30656.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 241 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT+RE + G ++ +IA +L LS TV Y+ KL +R+Q Sbjct: 167 PPAIAALTDREREVARNVARGLSNAQIAARLFLSEATVKTYVSRLLTKLGLRDRVQIAVL 226 Query: 228 AIRFGYI 234 A G + Sbjct: 227 AYETGLV 233 >gi|290956290|ref|YP_003487472.1| respose regulatory protein [Streptomyces scabiei 87.22] gi|260645816|emb|CBG68907.1| putative respose regulatory protein [Streptomyces scabiei 87.22] Length = 238 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 38/109 (34%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G L + S L+ERE L Sbjct: 129 AGATGYLLKAERPEELFAAIRDAASGRTTLSAPVADRLMAQLRSPRPALSEREHEILGQL 188 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A A + Sbjct: 189 ARGLGNREIARALFISEATVKTHLGRIYAKLGVETRAGAVAVAKERRLL 237 >gi|312112563|ref|YP_003990879.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217664|gb|ADP76268.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 185 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S+ LT+ E LQ + T+ EI+E L +S TV ++ S KLD +R+ Sbjct: 114 ADRLSNYHPPLTKVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVG 173 Query: 224 AIAKAIRFGYI 234 A+ KA++ G + Sbjct: 174 AVVKAMKLGIL 184 >gi|253688783|ref|YP_003017973.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755361|gb|ACT13437.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 210 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 10/133 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 L + I V ++ A E +++A + Sbjct: 71 LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDAIRSSDAFSDQV 130 Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ + R S LTERE LQ G ++++IA L +S TV ++ + Sbjct: 131 RDVLRHRIAIQETPSPFTVLTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLR 190 Query: 215 KLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 191 KLNVRSRVAATVL 203 >gi|91776067|ref|YP_545823.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710054|gb|ABE49982.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 213 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + ++ + + L++RE G T+ EIA+ L LS TV + Sbjct: 126 MYLEANVAQQMAIQQISGQQNPVDVLSDREFEVFMALAKGKTTNEIADILSLSPRTVGTH 185 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L + KL+A N + A+R G I Sbjct: 186 LYNIKQKLNASNSAEIALIAMRSGLI 211 >gi|299531936|ref|ZP_07045336.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298720111|gb|EFI61068.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 214 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 20/177 (11%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128 P+ + S +L +L + L Sbjct: 37 ARARLAEHPVAMALVDLGLPDGSGIELISQLRAADPGMGILVISAWSTEDAILSALRAGA 96 Query: 129 NGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLEL----FKKRSSAARNLTER 177 NGYV+ + L + + ++I + K L+ R Sbjct: 97 NGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRIIAELQPSQPTEAHKEMPPEAILSAR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L DG T+ EIAE L LS +TV ++ + KL +R +A+++A G + Sbjct: 157 EIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 213 >gi|253686983|ref|YP_003016173.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753561|gb|ACT11637.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 204 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ER+ LQL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|27362891|gb|AAN86997.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum] Length = 204 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ER+ LQL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|94969929|ref|YP_591977.1| LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551979|gb|ABF41903.1| transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 153 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ EIA +L +S +TV + A KL A R QA+ + G + Sbjct: 93 TAREMEILTLVAHGLSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAVQRGKELGLL 152 >gi|92116611|ref|YP_576340.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799505|gb|ABE61880.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 201 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +S +L+ RE L L +G ++ IA +LG+SVHTV ++ + VKL A NR Sbjct: 129 EETAASLPIHLSPREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAANRTD 188 Query: 224 AIAKAIRFGYI 234 AIA A+R G + Sbjct: 189 AIATAMRQGLV 199 >gi|84501129|ref|ZP_00999364.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanicola batsensis HTCC2597] gi|84391196|gb|EAQ03614.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanicola batsensis HTCC2597] Length = 269 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 71/248 (28%), Gaps = 23/248 (9%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNR-------------IKARNFALYTINSALDFPRRQQ- 49 + ++ +S ++ RL Q Sbjct: 11 DLSEPERLASRRDYLERLTNAQTIEELWRLHCDKMAGYGFDRLIYGFTRYRTATSLGDPE 70 Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSV 106 L N+ + + + W +++ + S + + Sbjct: 71 DFVILTNHTEAYTEGFLGKGLYFHAPMVRWALEHEGACSWGILEDMIASGTLTGSERKVI 130 Query: 107 RLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 G + + + S + + + HG V+ + L Sbjct: 131 EFNRQHDVLTGYSISFKSISPRTKGAIALTARSGLSQAEVDGVWQQHGRDIVVMNNVAHL 190 Query: 164 FKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 AR LT+R+ LQ GDG T+ +IA +GL+ TV +L A L+ Sbjct: 191 KILTLPYAGPARGLTKRQREALQWVGDGKTTADIALLMGLTSATVEKHLRLAREALNVET 250 Query: 221 RIQAIAKA 228 QA+ KA Sbjct: 251 TAQAVLKA 258 >gi|332666745|ref|YP_004449533.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335559|gb|AEE52660.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 C +VI LE + + A L+ RE +QL+ G ++EIA+ L LS HTV Sbjct: 126 FFCTRVIDCLLEKSFSKDTQVNCAPTPLSSREIEIVQLSARGLIAKEIADTLNLSTHTVY 185 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL + + + A+ G + Sbjct: 186 THRKNIMKKLQINSSSELVLYAVSKGLV 213 >gi|258624788|ref|ZP_05719719.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603] gi|258582950|gb|EEW07768.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603] Length = 207 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 80 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 139 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 ESNPFETLTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199 Query: 227 KAIRF 231 + Sbjct: 200 LYLER 204 >gi|116696270|ref|YP_841846.1| response regulator [Ralstonia eutropha H16] gi|113530769|emb|CAJ97116.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 218 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE +Q G +++EIA LG++ TV ++ + KL+ +R+Q A+ Sbjct: 152 APRLTAREREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVE 211 Query: 231 FGY 233 G Sbjct: 212 HGL 214 >gi|304385722|ref|ZP_07368066.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284] gi|304328226|gb|EFL95448.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284] Length = 201 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L++A G ++EIA++L LS T+ YL + KL NR++A+ A Sbjct: 140 PLTKRETEVLKVAASGMPTKEIAQQLFLSEGTIRNYLSAIFSKLGVRNRLEAVELAQNNR 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|262164491|ref|ZP_06032229.1| transcriptional regulator VpsT [Vibrio mimicus VM223] gi|262026871|gb|EEY45538.1| transcriptional regulator VpsT [Vibrio mimicus VM223] Length = 224 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + + I + +S LT+RE ++L G G ++ EIA+KL +S Sbjct: 128 DEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVSE 187 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 188 NTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|258625244|ref|ZP_05720156.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|262173344|ref|ZP_06041021.1| transcriptional regulator VpsT [Vibrio mimicus MB-451] gi|258582491|gb|EEW07328.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|261890702|gb|EEY36689.1| transcriptional regulator VpsT [Vibrio mimicus MB-451] Length = 224 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + + I + +S LT+RE ++L G G ++ EIA+KL +S Sbjct: 128 DEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVSE 187 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228 +TV +L + K++A NR+QA+ A Sbjct: 188 NTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|262203353|ref|YP_003274561.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086700|gb|ACY22668.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 39/80 (48%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+T + + LTERET L+L G T+ EIA LG+S TV +++ Sbjct: 144 RVLTGYRRSTTGDIATPDELTERETDVLRLVARGRTNAEIAAGLGISEVTVKSHINHIFT 203 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD +R AI A + Sbjct: 204 KLDLRDRAAAIVYAFDHSLV 223 >gi|239918654|ref|YP_002958212.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839861|gb|ACS31658.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 230 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYT 190 + + ++ + ++ +D + + ++ +A +LT RE L L G Sbjct: 125 VHRGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVLMAQGAA 184 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA +L LS TV ++G KL A +R+QA+ A R G + Sbjct: 185 NLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228 >gi|116330476|ref|YP_800194.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124165|gb|ABJ75436.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 233 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++I +F + + ++ +N LT+R+ L G T +IA++L +S HTV+ Sbjct: 140 RIADKIIREFTKKEENQNPPIQNTLGLTKRQLQILNFVALGMTVADIADELDISSHTVSR 199 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ K++ ++ +AI + R G I Sbjct: 200 HIEKIYKKMEVHSKSEAIIRGRRMGII 226 >gi|116328918|ref|YP_798638.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121662|gb|ABJ79705.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 233 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++I +F + + ++ +N LT+R+ L G T +IA++L +S HTV+ Sbjct: 140 RIADKIIREFTKKEENQNPPIQNTLGLTKRQLQILNFVALGMTVADIADELDISSHTVSR 199 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ K++ ++ +AI + R G I Sbjct: 200 HIEKIYKKMEVHSKSEAIIRGRRMGII 226 >gi|21218963|ref|NP_624742.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|6138889|emb|CAB59718.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 4/106 (3%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGD 187 + + A + ++ A + + S LT RE L D Sbjct: 109 ELLDGIRTVAAGDALLSAAATRSLITRFLDSPDPRASPVPPEDLAALTAREREVTALVAD 168 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G + +EIA +L LS TV ++ A KL A +R Q +A A R G Sbjct: 169 GKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 214 >gi|323357435|ref|YP_004223831.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273806|dbj|BAJ73951.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 216 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 2/128 (1%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 + F ++ + +++ + + VI + Sbjct: 91 EAAARAIQRGASGFLLKDSEPE--FLLSAIRTVHAGSAVIAAEATRELFAHIAENGSAEP 148 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ LTERE LA G ++ EIA + LS TV ++ KL +R+Q + Sbjct: 149 VPASFGELTEREREIFLLAAAGLSNSEIAAREFLSEATVKTHISRILAKLSLRDRVQLVV 208 Query: 227 KAIRFGYI 234 A R G + Sbjct: 209 FAYRHGLV 216 >gi|297538769|ref|YP_003674538.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297258116|gb|ADI29961.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 281 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 9/111 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAARN--------LTE 176 + YV F+++ + ++ V+ + +S A + L+ Sbjct: 167 NNDCLYVFFSTDSTFNVQDSLMGLLMPHIDNVLRKIQHIEPVDASEAESVSVIKSYNLSV 226 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE + G T EIA L +S +TV ++L KL+ R QA+AK Sbjct: 227 RELEIIDWVKQGKTDSEIAMILFISQNTVKSHLKHVFEKLNVSRRAQAVAK 277 >gi|256790030|ref|ZP_05528461.1| two-component response regulator [Streptomyces lividans TK24] gi|289773911|ref|ZP_06533289.1| two-component system response regulator [Streptomyces lividans TK24] gi|289704110|gb|EFD71539.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 4/106 (3%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGD 187 + + A + ++ A + + S LT RE L D Sbjct: 113 ELLDGIRTVAAGDALLSAAATRSLITRFLDSPDPRASPVPPEDLAALTAREREVTALVAD 172 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G + +EIA +L LS TV ++ A KL A +R Q +A A R G Sbjct: 173 GKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 218 >gi|238061615|ref|ZP_04606324.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237883426|gb|EEP72254.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 42/121 (34%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG++ + + + T + S Sbjct: 108 LQAGVSGFLLKDAGPAELLHAIRVVAAGDALLAPRITRRLIGQFTAQRTATQAAESRLAV 167 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G G ++ EI +L LS T ++ A KL A +R Q + A + G Sbjct: 168 LTQREREVLTLVGRGLSNNEIGAELFLSPATARTHVSHAMAKLGARDRAQLVVIAYQTGL 227 Query: 234 I 234 + Sbjct: 228 V 228 >gi|197121316|ref|YP_002133267.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171165|gb|ACG72138.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] Length = 208 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G ++ IA +LG+S HT ++ + KL A +R +AI +A R G Sbjct: 145 PLTPREREVLALVAEGLGNKAIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 204 Query: 233 YI 234 + Sbjct: 205 LV 206 >gi|189461728|ref|ZP_03010513.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136] gi|189431488|gb|EDV00473.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136] Length = 215 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 39/85 (45%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 C + + E + S LT E L+ G T++EIA + LSV+TV + Sbjct: 124 QYICMKAKSWLYEKERDAVSDMPQLTMTEKEVLRSLTLGKTTKEIAAERFLSVYTVMTHR 183 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ N +AI A+R G + Sbjct: 184 KNIFRKLNVNNAQEAIRYALRAGIV 208 >gi|332530117|ref|ZP_08406067.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040590|gb|EGI76966.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 211 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L L++RE +L G EIAE+L +S TV+ + KL+ + Sbjct: 138 SLGSGDRLPHETLSDREMEVFRLLLAGQGVNEIAEQLCISNKTVSTHKTRLMEKLNLGST 197 Query: 222 IQAIAKAIRFGYI 234 + + A++ G + Sbjct: 198 AELVRYAMQHGLL 210 >gi|326330564|ref|ZP_08196871.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325951639|gb|EGD43672.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 205 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + ++ + A G + K S LT+RE L+ Sbjct: 97 AGAAGYLLKDVDPEVIVEGIRRAAAGDVVLAPDLAARVLKGMRSPLPRLTDREIEVLRHL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA L ++ TV ++L KLD +R +AI A G I Sbjct: 157 ARGATNREIARTLFVTEATVKSHLAHIFTKLDVDSRSRAIHVAQETGLI 205 >gi|256787861|ref|ZP_05526292.1| two-component system response regulator [Streptomyces lividans TK24] gi|289771746|ref|ZP_06531124.1| two-component system response regulator [Streptomyces lividans TK24] gi|289701945|gb|EFD69374.1| two-component system response regulator [Streptomyces lividans TK24] Length = 231 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 154 YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I FL L+ERE L L G + EIAE LGLS T ++ Sbjct: 134 ARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVS 193 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+A +R Q + A G + Sbjct: 194 RIMGKLEARDRAQLVIVAYESGLV 217 >gi|227327824|ref|ZP_03831848.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|290454909|emb|CBJ57167.1| homologue of Erwinia virulence regulator [Pectobacterium carotovorum] Length = 204 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ER+ LQL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|146280183|ref|YP_001170340.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] gi|145558424|gb|ABP73035.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] Length = 207 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV + L N + G Y ++ L + + + L+ +E L+ Sbjct: 97 LHRGAAGYVEKSQSARSLVNAINFVLAGEIYVPMSLRLNSVRPSITDEKGLSPKELEVLR 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +G ++EIA+ LG+S TV ++ S K++ NR QA Sbjct: 157 CLTNGLMNKEIAQTLGISEVTVKMHVRSICAKMNVKNRTQAAMI 200 >gi|73748274|ref|YP_307513.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669054|ref|YP_001213872.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432323|ref|YP_003462196.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|73659990|emb|CAI82597.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270002|gb|ABQ16994.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] gi|288946043|gb|ADC73740.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 232 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQLA G ++ EIA+KL LS+ TV A+L + K+ R +AI K R G Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 Query: 233 YI 234 Y+ Sbjct: 214 YV 215 >gi|292491638|ref|YP_003527077.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291580233|gb|ADE14690.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 206 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT--- 175 P+ + K G + F ++ L + +++A ++ ++ K + + LT Sbjct: 86 TIPLSVRAMKGGAIEFLTK--PLDEQYLLDAIHKAVELNRQAMQEQVKITEVQQRLTSLT 143 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE+ +L G +++IA KLG S T+ + K+ A + Q + A + G Sbjct: 144 PRESEVFKLVITGLLNKQIAFKLGRSEKTIKVHRARVMEKMQAKSLAQLVRLAEKMGI 201 >gi|315499018|ref|YP_004087822.1| transcriptional regulator, luxr family [Asticcacaulis excentricus CB 48] gi|315417030|gb|ADU13671.1| transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 132 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKL 198 A + ++ + A+ ++ RE + L G +++EIA KL Sbjct: 36 AAGFLALGVFVGNRLFRALPTQPFNGNPQAQTALGISARELTVLHELAAGQSNKEIARKL 95 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S HTV ++ KL A R A+ KA G I Sbjct: 96 SVSPHTVKTHVARLYDKLQATRRTDAVRKARELGLI 131 >gi|226364089|ref|YP_002781871.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242578|dbj|BAH52926.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 394 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT RE QL G ++ EIA++L +SV TV +++ KL A+NR +AI Sbjct: 319 RAPGLEELTMREREVFQLLAAGKSNTEIADELVISVFTVKSHVKKILRKLGAMNRSEAIY 378 Query: 227 KAIRF 231 + + Sbjct: 379 RYLEM 383 >gi|86360200|ref|YP_472089.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86284302|gb|ABC93362.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 223 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166 + I+ V G ++E ++ A E + + V + ++ Sbjct: 85 MLSMHDSREYISSSVMRGAAGYVLKDVSTEEIVAAIETVADGGTYFSSGVFDALMR--ER 142 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L L G ++ EIAE LG+S T + + KL I Sbjct: 143 AEQGSDPLTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIR 202 Query: 227 KAIRFGY 233 A+ G Sbjct: 203 YALDHGI 209 >gi|89092629|ref|ZP_01165582.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89083141|gb|EAR62360.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE L+L +G +++EIA L +SV TV + + KLD A Sbjct: 151 AEQEALTGREKDVLKLVAEGNSNKEIARTLDISVRTVETHRQNIKNKLDIHTAAGLTRYA 210 Query: 229 IRFGYI 234 I + Sbjct: 211 IDNNLV 216 >gi|310644124|ref|YP_003948882.1| response regulator (chey-like receiver domain and hth-type DNA-binding domain) [Paenibacillus polymyxa SC2] gi|309249074|gb|ADO58641.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Paenibacillus polymyxa SC2] Length = 216 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT++E L+ G+ S+EIA +G+S TV A+L + KL +R +A+A ++ G Sbjct: 154 LTDKERHILKSVAHGFKSKEIAFDMGISERTVKAHLTNIYNKLGVDSRSEAVAVSLERGI 213 Query: 234 I 234 + Sbjct: 214 L 214 >gi|271967487|ref|YP_003341683.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510662|gb|ACZ88940.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 239 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELFKKRSSAAR---N 173 L G++ S L+ A ++I+ ++ Sbjct: 103 LRAGAYGFLPKDSSPEDLSAAIRTVHAGEAAVAPRLLTRLISTYVRAPHGTRPTPTGLGE 162 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L G + I+ L +S+ TV Y+ S KL +R QA+ A G Sbjct: 163 LTPREVEVWRLMATGLDNTGISRTLDISLSTVKNYITSIFDKLAVRDRAQAVIVAYESGL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|261212434|ref|ZP_05926719.1| nitrate/nitrite response regulator protein [Vibrio sp. RC341] gi|260838365|gb|EEX65021.1| nitrate/nitrite response regulator protein [Vibrio sp. RC341] Length = 200 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 73 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 132 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KL+ +R A Sbjct: 133 ASNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLNVPSRTAATI 192 Query: 227 KAIRF 231 + Sbjct: 193 LYLER 197 >gi|271970494|ref|YP_003344690.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513669|gb|ACZ91947.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G G ++ EIA + +S HTV ++ + KL +R+QA+ A Sbjct: 152 DMLTARERETLELLGRGLSNAEIAATMVVSEHTVKTHVSNVLTKLGLRDRVQAVITAYET 211 Query: 232 GYI 234 G I Sbjct: 212 GLI 214 >gi|227112572|ref|ZP_03826228.1| virulence regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 204 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ER+ LQL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|254475262|ref|ZP_05088648.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214029505|gb|EEB70340.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 240 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE S +L G T++ IA +LGLS TV ++ S KL A NR Q +A A + Sbjct: 150 GLSPREQSIGELLALGLTNKVIAFELGLSEPTVKMHIRSIFRKLGAANRTQ-VAAAFQ 206 >gi|152965963|ref|YP_001361747.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360480|gb|ABS03483.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L+ ++ EIA L LS TV ++ KL +R+ A+ A Sbjct: 155 PRLADLTPRELEVLRHIAGARSNAEIAAHLFLSEATVKTHVARVLAKLGVRDRVHAVVLA 214 Query: 229 IRFGYIC 235 G C Sbjct: 215 YETGLAC 221 >gi|302867410|ref|YP_003836047.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506180|ref|YP_004085067.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570269|gb|ADL46471.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412799|gb|ADU10916.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 227 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 35/86 (40%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + + A LT+RE L G ++ EIA L +S TV + Sbjct: 138 LRRLLDRFAQVLPDPAAAPARALEPLTDREREVLTHMARGLSNAEIARLLSVSETTVKTH 197 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 +G KL +R+QA+ A G + Sbjct: 198 VGHVLTKLRLRDRVQAVVLAYETGLV 223 >gi|255019078|ref|ZP_05291204.1| two-component response regulator [Listeria monocytogenes FSL F2-515] Length = 64 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 1 ILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 54 >gi|87199644|ref|YP_496901.1| two component LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135325|gb|ABD26067.1| two component transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 244 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 36/85 (42%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + A L+ERE + G ++ IA+ LG++ TV Sbjct: 135 ALAQFLPETMERRTRPARPGPDLAGTLSEREIETFRRMCRGEPNKVIAQNLGITEATVKV 194 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFG 232 ++ + KL NR QA+A A+ G Sbjct: 195 HVKAILRKLHLKNRTQAVAWALGEG 219 >gi|260904804|ref|ZP_05913126.1| response regulatory protein [Brevibacterium linens BL2] Length = 206 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE ++L G ++ +IA++L ++ TV ++L + KL +R +AI A Sbjct: 142 PGPKLTRRERDVVKLLATGASNAQIAQELFVTEATVKSHLVNVFTKLGVESRSRAIRVAE 201 Query: 230 RFGYI 234 G + Sbjct: 202 DQGLV 206 >gi|55821328|ref|YP_139770.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55823240|ref|YP_141681.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55737313|gb|AAV60955.1| response regulator (homolog to RR11 Spn) [Streptococcus thermophilus LMG 18311] gi|55739225|gb|AAV62866.1| response regulator (homolog to RR11 Spn) [Streptococcus thermophilus CNRZ1066] Length = 200 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L++RE L + G T++EIAE L LS TV Y+ + KLDA NR Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 A+ A ++ Sbjct: 187 TDAVRIAKEKDWL 199 >gi|307946119|ref|ZP_07661454.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307769783|gb|EFO29009.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 233 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 13/229 (5%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPN 66 ++++ + L R+ A + + + L P R + D Sbjct: 14 VSEANAAHHVLDILESNLRRMGA----THVLITGLPMPNRPIDSLVHRFRWPDQRNDGIE 69 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLG 125 + D L + ++W I + L + PV Sbjct: 70 STSLSANDSALMLGLASNRAMVWT-------ISAGDMEHSDLLAAAGEGNQVVIVPVTEL 122 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +V + L + +L L+ RE L+L Sbjct: 123 HPFQAFVYASGPSLQANKWELAGLEVLSNAAFARLRDLGVVSGQRPGALSTRERKVLELT 182 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA+ L +S TV+A+L +A+VKL+A N+ + +A+R+G I Sbjct: 183 AYGKTAGEIADLLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231 >gi|283784182|ref|YP_003364047.1| two-component system response regulator protein [Citrobacter rodentium ICC168] gi|282947636|emb|CBG87191.1| two-component system response regulator protein [Citrobacter rodentium ICC168] Length = 209 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 13/160 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---- 142 + + E+ L RL F I + + L Sbjct: 48 VSVAVMDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDSPTFVQSALTAGASGYLTKRCG 107 Query: 143 NEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E +++A H C + L ++ LT RE L G + +EI Sbjct: 108 PEELVQAVRSVGLGGHYLCADAL-RALRGGEQLPPELEALTPREREVFNLLVKGDSVKEI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A KL LS TV+ Y + KL+ + I+ + A+ + Sbjct: 167 AFKLDLSHKTVHVYRANVLGKLNCHSTIELVHFALDHKLL 206 >gi|302876066|ref|YP_003844699.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] gi|307686787|ref|ZP_07629233.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Clostridium cellulovorans 743B] gi|302578923|gb|ADL52935.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] Length = 805 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+++E ++L +G T+ EIA +L +S TV ++ + KL+A NRI A+ A Sbjct: 743 EELSKKELEVIRLIAEGCTNGEIAARLDISTATVKFHIANLLKKLNAENRIMAVKIASEN 802 Query: 232 GY 233 Sbjct: 803 DL 804 >gi|239933765|ref|ZP_04690718.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 212 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + ++ + + ++ + K + + LTERET L L Sbjct: 101 PADLIAAVRVVASGDALLAPSVTRRLIADFAKQRPAVRGKPALRLKGLTERETEVLTLVA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA+ L L+ TV ++ KLD +R QA+ A G + Sbjct: 161 RGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 208 >gi|223934493|ref|ZP_03626414.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896956|gb|EEF63396.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 212 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 153 CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + S LT+RE L L G+ ++EIA+K+ +SV TV +L Sbjct: 133 SQVAHRVVHSFHEPASPTVDTAALTDREKEILDLLTQGFANKEIADKMQISVTTVRTHLR 192 Query: 211 SATVKLDAVNRIQAIAK 227 KL +R +AI K Sbjct: 193 HIYEKLHIRSRSEAIVK 209 >gi|294102849|ref|YP_003554707.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293617829|gb|ADE57983.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 223 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 160 FLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 FL +K + + + L+ RE LQL +G + +IA+ L +SV TV + + K++ Sbjct: 145 FLSGDEKEHTDSESALSHREKEVLQLIAEGKANRDIAKTLHISVKTVETHKYNIMRKINL 204 Query: 219 VNRIQAIAKAIRFGY 233 + + AI+ G Sbjct: 205 HSVAELTKYAIKSGL 219 >gi|172063774|ref|YP_001811425.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996291|gb|ACB67209.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 301 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + + + L Sbjct: 60 TLANAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PNTYRGDYV 117 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116 D +PI+W ++ + L ++ + Sbjct: 118 RHNHHDIDPRTLDARVCNMPIVWDLQQLRREHRERDSGPCVTPAALDGFLQTMQDDGMCS 177 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 236 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296 Query: 230 RFGYI 234 + I Sbjct: 297 KLELI 301 >gi|77165178|ref|YP_343703.1| two component LuxR family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254433476|ref|ZP_05046984.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|76883492|gb|ABA58173.1| two component transcriptional regulator, LuxR family [Nitrosococcus oceani ATCC 19707] gi|207089809|gb|EDZ67080.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 201 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 4/129 (3%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---- 160 ++L G L I + + +F+ + + Sbjct: 69 ILQLRGIHLSIIMITGHADVPMAVRAMKLGAKDFIEKPFRAQTLLDRLHKILSEETPKKQ 128 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ + +LT RE +L G ++ IA +L +S+ TV + + KL + Sbjct: 129 FHSQPEKLAQLESLTRRERQVFKLLAQGKMNKHIAAELCISIRTVETHRANIMEKLKVRS 188 Query: 221 RIQAIAKAI 229 + AI Sbjct: 189 LADIVRLAI 197 >gi|238799349|ref|ZP_04642788.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] gi|238716799|gb|EEQ08676.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] Length = 209 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 11/131 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITD- 159 L + I V + +I E+++E +V +D Sbjct: 72 LRNEGIDARIIILTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRQAALGEKVFSDE 131 Query: 160 ---FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 132 VALYLSSRHEQVNPFGELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAK 227 + +R+ A Sbjct: 192 NVRSRVAATIM 202 >gi|320106073|ref|YP_004181663.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924594|gb|ADV81669.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 239 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 3/91 (3%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E ++ A + ++ ++++ LT RE + +G +++++A + +S Sbjct: 149 ERVVNLVMALHGLMQKAAAQPERKTF---GLTPRELEVVGCIVEGCSNKDVARQFNISEE 205 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + K R++ AI + Sbjct: 206 TVKRHLSNIFDKTGVSTRLELALFAISHKLV 236 >gi|320009389|gb|ADW04239.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 210 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 38/109 (34%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S LTERE L Sbjct: 101 AGATGYLLKAERPEELFAAIRAAAQGRTTLSPPVASRVMARMRSPRPTLTERELDILGQL 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A++ A + Sbjct: 161 SQGLGNRDIARALFISEATVKTHLGRIYEKLGVDTRAGAVSVAKEQRLL 209 >gi|258652817|ref|YP_003201973.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556042|gb|ACV78984.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTE 176 GYV+ + A ++ +L L + LT Sbjct: 98 SAGAAGYVLKRQADQDIVEACRAALRGESFIYPAALTSLMRTYLDRLARGERPGRGPLTP 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L +G++++EIA+ L +S TV+ + + KLD +R+ AIR G I Sbjct: 158 READVVKLIAEGHSAQEIADCLSISPRTVDRHRANILEKLDLRDRVDLTRYAIRAGLI 215 >gi|254385617|ref|ZP_05000941.1| response regulator [Streptomyces sp. Mg1] gi|194344486|gb|EDX25452.1| response regulator [Streptomyces sp. Mg1] Length = 210 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L N V A G + +LF+ R A L+ERE LQL Sbjct: 101 AGAAGYLLKGSSREELVNAVKAAARGETVLTPSLAPKLFRARVVEAPVLSERECEVLQLV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +I +L +S TV +L + KL +R A+ A+ G + Sbjct: 161 RQGLTNADIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVITALERGLL 209 >gi|224477373|ref|YP_002634979.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] gi|81321267|sp|Q7WZY4|NREC_STACT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|32330234|gb|AAP79640.1| NreC [Staphylococcus carnosus] gi|222421980|emb|CAL28794.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + A+ Sbjct: 151 PFRILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYAL 210 Query: 230 RFGYI 234 + + Sbjct: 211 KKKLL 215 >gi|4096799|gb|AAD10462.1| orfx; function unknown; similar to response regulators of two-component regulatory systems; Method: conceptual translation supplied by author [Staphylococcus carnosus] Length = 185 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + A+ Sbjct: 119 PFRILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYAL 178 Query: 230 RFGYI 234 + + Sbjct: 179 KKKLL 183 >gi|331696674|ref|YP_004332913.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951363|gb|AEA25060.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS------AARNLTER 177 L G+++ + + + V A G EL A R LT+R Sbjct: 101 LRAGATGFLLKRARPADIVSAVRTVASGESLLFPAAVRELVAAVGPDTGDRLAGRGLTDR 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+ L+ G ++ EIA +L L V TV ++G+ KL +R QA+ A G++ Sbjct: 161 ESEVLRGMARGLSNAEIAAELVLGVETVKTHVGNVLAKLGVRDRTQAVVAAFESGFV 217 >gi|295695702|ref|YP_003588940.1| GAF modulated transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295411304|gb|ADG05796.1| GAF modulated transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 511 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 81/239 (33%), Gaps = 33/239 (13%) Query: 10 KSSSLQELS-PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +S +L+E+ + R AL+ Y + + +IP Sbjct: 291 QSKNLEEIITSTVEKTCRIGGFRRSALFWYTPLTR-----------SVYGVHAFNIPREN 339 Query: 69 IETYGDDF-----LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 I+ + + + P+ +++I + + P+ Sbjct: 340 IQCIREPVENLSGIQEVFEKMKPVHFENIHRRLPDHYVESFH--------LSSLLVCPIP 391 Query: 124 LGFHKNGYVIFTSEFL---MLANEVIIEAHGACYQVITDF-LELFKKRS----SAARNLT 175 + + V+ + + + L + + ++ LT Sbjct: 392 VVGERQVAVLLLDQDGTPFQADEGTLFALDTMMSRAAKAMSARLAEPATKVGIPSSGVLT 451 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ DG ++EI++ L LS +TV+ Y+ + +L NR A+AKA+R I Sbjct: 452 PREQQILQFIADGLDTKEISQHLHLSEYTVSEYVRAILRRLQVPNRSAAVAKAMRQNII 510 >gi|226305431|ref|YP_002765389.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184546|dbj|BAH32650.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 219 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 3/121 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + G + + A + Sbjct: 99 RGGARGYVTKTISGSELAEGVRRVAGGDAVFGPRL---AGFVLDSFTGRSNAPEPQLDPE 155 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE L +SV TV + + K NR A R Sbjct: 156 LDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHR 215 Query: 231 F 231 Sbjct: 216 R 216 >gi|213970476|ref|ZP_03398604.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383864|ref|ZP_07232282.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060596|ref|ZP_07252137.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302134766|ref|ZP_07260756.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924794|gb|EEB58361.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 42/95 (44%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E +SA LT RE L L G+++ EI EKLG Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGASAPEALTPRERQVLGLVAGGFSNREIGEKLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|167563389|ref|ZP_02356305.1| nitrate/nitrite response regulator protein NarL [Burkholderia oklahomensis EO147] Length = 199 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 130 DQLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVYAVER 189 Query: 232 GY 233 G Sbjct: 190 GL 191 >gi|282858615|ref|ZP_06267777.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] gi|282588619|gb|EFB93762.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] Length = 214 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 37/84 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C + LE S LT+ ET L G T++EIAEK S HTVN + Sbjct: 124 FLCQHITEMLLEPASSLSFERFKLTKTETEILIDIALGMTTKEIAEKRFSSFHTVNTHRK 183 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N +A A+R G I Sbjct: 184 NIFRKLSVNNANEATRYALRSGLI 207 >gi|264680819|ref|YP_003280729.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262211335|gb|ACY35433.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 214 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 20/177 (11%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128 P+ + S +L +L + L Sbjct: 37 ARARLAEHPVAMALVDLGLPDGSGIELISQLRAADPGMGILVISAWSTEDAILSALRAGA 96 Query: 129 NGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLEL----FKKRSSAARNLTER 177 NGYV+ + L + + ++I + K L+ R Sbjct: 97 NGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRIIAELQPSQPTEAHKEMPPEALLSAR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L DG T+ EIAE L LS +TV ++ + KL +R +A+++A G + Sbjct: 157 EIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 213 >gi|10957401|ref|NP_051615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460830|gb|AAF12534.1|AE001826_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 209 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A LT RE L+L DG +++IAE LG+SV TV ++ +L A +R QA Sbjct: 141 RMPEAHSPLTPRELDILRLIADGLPNKDIAEALGVSVSTVKLHIQDILHRLQAADRTQAA 200 Query: 226 AKAIRFGYI 234 KA+R G + Sbjct: 201 VKALRAGLL 209 >gi|308172085|ref|YP_003918790.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307604949|emb|CBI41320.1| two-component response regulator RBAM_002490 [Bacillus amyloliquefaciens DSM 7] gi|328910154|gb|AEB61750.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens LL3] Length = 214 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +S+ LT RE + +G +++ IA L L+ TV Y+ KL+ NR + Sbjct: 146 EEPKSNLTEILTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVTNRTE 205 Query: 224 AIAK 227 Sbjct: 206 LTLY 209 >gi|294674324|ref|YP_003574940.1| LuxR family transcriptional regulator [Prevotella ruminicola 23] gi|294471985|gb|ADE81374.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23] Length = 197 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKL 198 + E++ L + ++ L++RE + L GY ++EIA+KL Sbjct: 97 VPEPELVRSLLMLEQHAHGKGEHLPPMPAILSQKILSDREIEVMSLIVQGYINKEIADKL 156 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + TV + + KL + A+ GY+ Sbjct: 157 NIGLATVITHRKNIMDKLGMKSVSALTIYAVMHGYV 192 >gi|302553638|ref|ZP_07305980.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471256|gb|EFL34349.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 247 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 129 IRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 188 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 189 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 247 >gi|254693131|ref|ZP_05154959.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 3 str. Tulya] gi|261213372|ref|ZP_05927653.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260914979|gb|EEX81840.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 213 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V LE +KRS L+ RE L L +G ++ EIA +LG+S TV + Sbjct: 129 YFSSGVSEALLESGEKRS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL + AI Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208 >gi|271961856|ref|YP_003336052.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505031|gb|ACZ83309.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 214 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ ++ L V A G + L + + A L+ RE L+L Sbjct: 100 AGATGYLLKDTQRDDLIRAVRTAARGEAVLSPSVATRLLGQVRAPADPLSARELEVLELI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E+A +L +S TV ++L KL +R A+A A R G + Sbjct: 160 AQGTTNREVAARLFISEATVKSHLLHIYTKLGVNDRAAAVAVAFRRGLL 208 >gi|171319948|ref|ZP_02909024.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171094804|gb|EDT39842.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 301 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 71/245 (28%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + + + L Sbjct: 60 TLANAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PNTYRGDYV 117 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116 D +PI+W +++ + L ++ + Sbjct: 118 RHNHHDIDPRTLDARVCNMPIVWDLQQLRREHRERDDGPCVTPAALDGFLQTMQDDGMCS 177 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 236 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296 Query: 230 RFGYI 234 + I Sbjct: 297 KLELI 301 >gi|169350169|ref|ZP_02867107.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552] gi|169292952|gb|EDS75085.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552] Length = 67 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L + ++++EIA+ L +S TV ++ + KL +RIQA+ + +R Sbjct: 5 LTPREREVFTLLINNHSTKEIAQILKISEKTVRNHISNVIQKLGVDSRIQAVFELVRL 62 >gi|156743691|ref|YP_001433820.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235019|gb|ABU59802.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 221 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 20/219 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L ++ ++ + + + L+ + D + + G Sbjct: 13 ADDHELVLEGLRGLLERESDMI----VVATATDGESLLAIIERERPDVVVMDLAMPTRDG 68 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 L +P+ + + G + I Sbjct: 69 LSCLREIRRRGMPVKVVILTAFGDGGALQSAWEMQADGFALKT-------DPPRQTIATI 121 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + ++ Q L LT+RE L+L +G + + Sbjct: 122 RNVAHGQIVFPRVVRQAADATQAHGQSL---------LARLTQRERDVLRLLAEGMPNAQ 172 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 IAE+L + TV +L + KL NR +A R G Sbjct: 173 IAERLVVQESTVKYHLQNIFQKLGVTNRTEAAQVYYREG 211 >gi|145588751|ref|YP_001155348.1| two component LuxR family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047157|gb|ABP33784.1| two component transcriptional regulator, LuxR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 197 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + +L A LT+R+ L +G +++ IA L +S TV +LG Sbjct: 116 YIYQSLCDLMGLNPDEAELTQLTDRQKEILAHISNGDSNKMIAYSLNISEQTVKVHLGEI 175 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 K+ NR QA+ KA G++ Sbjct: 176 FKKIKVFNRTQAVIKAKENGWV 197 >gi|50955085|ref|YP_062373.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951567|gb|AAT89268.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 223 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + +LT RE LA G ++ EIA LS TV ++ KL +R Sbjct: 147 RAAQPVPAEFASLTSREREIFALAARGLSNAEIAGSEFLSEATVKTHISRILGKLGLRDR 206 Query: 222 IQAIAKAIRFGY 233 +Q + A G Sbjct: 207 VQMVVYAFEHGL 218 >gi|29828913|ref|NP_823547.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|15824126|dbj|BAB69292.1| two-compnent system regulatory protein [Streptomyces avermitilis] gi|29606018|dbj|BAC70082.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 218 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTERETS 180 L GY+ ++ L + + + + + L ++ LT RE Sbjct: 101 LDCGVRGYLNKSASRNDLVSSIRAVCADNIRIVLHISVEALTHIATTANCQDKLTRREIE 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L ++ +I+ +L ++ TV +LG+ KL A +R++A+ KA+ G I Sbjct: 161 ILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGLI 214 >gi|304405956|ref|ZP_07387614.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345199|gb|EFM11035.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G +++IA+ L LS TV Y+ + K++ R +A KA G Sbjct: 154 GLSAREVEVLHKLALGLRNQDIAKALYLSEGTVKNYISNIYSKMNVKGRREAAYKARETG 213 Query: 233 YI 234 + Sbjct: 214 IL 215 >gi|238059358|ref|ZP_04604067.1| sensor transduction protein [Micromonospora sp. ATCC 39149] gi|237881169|gb|EEP69997.1| sensor transduction protein [Micromonospora sp. ATCC 39149] Length = 221 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L L G ++ EIA ++ ++ TV ++G KL +R+QA+ A Sbjct: 152 PRLAQLTEREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLRLRDRVQAVVLA 211 Query: 229 IRFGYI 234 G + Sbjct: 212 YESGLV 217 >gi|145300854|ref|YP_001143695.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853626|gb|ABO91947.1| transcriptional regulator, LuxR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 200 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE ++ G ++ EIA+ L +S HT+ ++L + KL+ NR+QA++ A Sbjct: 142 LTAREQEIIRYLMTGASNTEIADSLFVSEHTIKSHLYNVFKKLNVRNRLQAVSWAKE 198 >gi|159037020|ref|YP_001536273.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157915855|gb|ABV97282.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 323 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 15/232 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 E + G+ L + RL + + ++ ++ ++ + + + + Sbjct: 107 EQEVQGRALDGLDAVRERLIELAHNARSE-----CLSFTTGRGQQPDTMEAEGSLNQVAL 161 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + Y + F + + +S ++ + ++ PV Sbjct: 162 RRGVRIRNLYQESF----RNDPATLAHARWMASLGSQSRTAPTLPMRMVIVDRELALVPV 217 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + + V+ QV + S + LT +E L Sbjct: 218 DPNDPARGALEL------RSPGVVAGLIALFEQVWHTAKPFGDEASPDEQGLTAQERELL 271 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G T E A KL +SV +V + S T +L+A +R QA +A R G++ Sbjct: 272 RLLAAGSTDESAARKLAISVRSVQRMMTSLTERLEAASRFQAGVQATRRGWV 323 >gi|157370683|ref|YP_001478672.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157322447|gb|ABV41544.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 497 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 12/127 (9%) Query: 119 AFPVRL-GFHKNGYVIFT-SEFLMLA-----NEVIIEAHGACYQVITDFLELFKKRSSAA 171 A + + + T + L EV+ +A ++ + Sbjct: 361 AVSIHDVPCYLLVMMDITERKRSELELVSAIEEVMQDASWFSQTLLEKLANVKSINKPNL 420 Query: 172 RN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L L +G ++IA +L L+ +TV ++ KLD +R +AI Sbjct: 421 SGFSFTDLTARERDVLGLICEGLPDKKIATRLNLAPNTVRNHVAMVYSKLDVHSRSEAIV 480 Query: 227 KAIRFGY 233 A G Sbjct: 481 WARERGL 487 >gi|161830943|ref|YP_001596915.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331] gi|161762810|gb|ABX78452.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331] Length = 216 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRS--SAA 171 G P+RL I S I H I L L K S Sbjct: 86 GELLPMRLLDVGVRGFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSKTTPTKSPF 145 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ R+ L L G +EEIA++L ++ TVN++ KL N ++ I A+++ Sbjct: 146 DQLSHRQMEVLLLLAKGMKAEEIAKQLHITTKTVNSHRYRMFDKLGVKNDVELIKLAVQY 205 Query: 232 GYI 234 G I Sbjct: 206 GVI 208 >gi|307244636|ref|ZP_07526740.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492017|gb|EFM64066.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 216 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/54 (46%), Positives = 32/54 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE L+L DG +++EIA KL LS TV Y+ S VKLD +R Q Sbjct: 159 LSEREIDVLELIADGLSNKEIAGKLYLSEGTVRNYISSILVKLDLRDRTQLAIY 212 >gi|218246750|ref|YP_002372121.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059792|ref|YP_003137680.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167228|gb|ACK65965.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589958|gb|ACV00845.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 221 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L G T++EIA+ L ++ TV ++ + KLD +R QA A++ Sbjct: 159 PLTQREQEILALIALGKTNQEIAQTLSIATGTVRVHVHAILQKLDVRDRTQAAIIALQH 217 >gi|254254354|ref|ZP_04947671.1| regulatory protein LuxR [Burkholderia dolosa AUO158] gi|124898999|gb|EAY70842.1| regulatory protein LuxR [Burkholderia dolosa AUO158] Length = 365 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 70/245 (28%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + + D L Sbjct: 124 TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFSRDRVESLYLHEAFT--PPTYRGDYV 181 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116 D +P++W +++ + L ++ + Sbjct: 182 RHNHHDIDPRTLGARVCNMPVVWDLQQLRREHRERDDGPCVTPAALDGFLQTMQDDGMCS 241 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 242 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 300 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 301 TVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 360 Query: 230 RFGYI 234 + I Sbjct: 361 KLELI 365 >gi|118593225|ref|ZP_01550610.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118434116|gb|EAV40772.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 233 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 13/236 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDL 59 + ++++ + L R+ A + + + L P R + Sbjct: 7 LKSKLRAISEANAAHHVLDILESNLRRMGA----THILITGLPMPNRPIDNLVQRFRWPD 62 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 D + D L +W I + L + + Sbjct: 63 QRNDGIESTSLSANDSALMLGLGSNRARVWT-------ISAGDMEHSDLLASAGEGSQVL 115 Query: 120 F-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 PV + +V + L + + + EL L+ RE Sbjct: 116 VIPVTELYPFQAFVFASGPALQVNKYDLSNLEALAAAAFSRLRELGVISGQRPGALSTRE 175 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIA+ L +S TV+A+L +A+VKL+A N+ + +A+R+G I Sbjct: 176 RKVLELTAYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231 >gi|312138597|ref|YP_004005933.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311887936|emb|CBH47248.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 65/213 (30%), Gaps = 11/213 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS- 82 + + I + Q+ + Y + H Sbjct: 14 LSRWSAELGYVAAAITYRRSGDQGQR-VLANGGYAVP-VAQYLAREFVDDTRIFDHIRVA 71 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLML 141 P+ W+ + + + + + G + + L + V+ S + Sbjct: 72 SGRPVCWEDVPDFELTSAVE----DVLRPSGFREGSSVALGLERGQVTSVLHVSFTRSQV 127 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + V Q + ++ S L+ RE L L G ++ EIA +L +S Sbjct: 128 DSTVRAGIEALARQCRRIVADQSERESF---RLSGREHQILALVAQGASNAEIAAELLIS 184 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + K +R++ +A G + Sbjct: 185 RRTVATHLENIFAKTGTRSRVRVAVRATELGIL 217 >gi|258592851|emb|CBE69160.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 160 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE L+L G++ ++IA L SV T+ + KL NR + A Sbjct: 93 APGDRLTPREQQILRLIAQGFSDKQIARTLQRSVRTIENHAARIRQKLHIENRTGLVRFA 152 Query: 229 IRFGYI 234 R I Sbjct: 153 FRNRLI 158 >gi|289768783|ref|ZP_06528161.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698982|gb|EFD66411.1| two-component system response regulator [Streptomyces lividans TK24] Length = 332 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V L AA +LT RET L L G ++ EIA +L ++ HTV ++ Sbjct: 240 LIAEFVHARGSRL---PVPAAGDLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHIN 296 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A G + Sbjct: 297 RLFAKLELRDRAQAVIVAYELGLV 320 >gi|238926539|ref|ZP_04658299.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] gi|238885485|gb|EEQ49123.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] Length = 209 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 32/76 (42%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F + LT RE GYT EIAE+L LSV TV+ + KL Sbjct: 133 MFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAEQLHLSVKTVDTHKKHIYEKLHC 192 Query: 219 VNRIQAIAKAIRFGYI 234 R + + A+R G + Sbjct: 193 SRRSELVTLALRNGLL 208 >gi|284034471|ref|YP_003384402.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283813764|gb|ADB35603.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 242 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 15/160 (9%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D L +L + + + G + G+ VR + + Sbjct: 86 DPDLRASRVLILTTYETDEYVAQALRAGASGFI---GKGIDADGLIDAVRTIADGDALLS 142 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + + + ++ + LT RE + L G ++ E Sbjct: 143 PAATRS------------LVARFLATPVDTAPRDVERLVALTPREREMVALVATGLSNLE 190 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IA+++ +S TV A++ A KL+A +R Q +A A R G Sbjct: 191 IADRMYVSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTGL 230 >gi|226311034|ref|YP_002770928.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226093982|dbj|BAH42424.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 873 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H + I L F+ + + L+ERE LQL G ++ +IA++L L++ TV Sbjct: 787 HRMLPRYIEKLLAEFEPHHADSLIEPLSERELEILQLIEKGLSNRDIAQQLFLALSTVKG 846 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL R +A+A+A + G + Sbjct: 847 HNRNVFDKLQVQRRTEAVARARQLGLL 873 >gi|167570554|ref|ZP_02363428.1| nitrate/nitrite response regulator protein NarL [Burkholderia oklahomensis C6786] Length = 233 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 164 DQLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVYAVER 223 Query: 232 GY 233 G Sbjct: 224 GL 225 >gi|158520046|ref|YP_001527916.1| two component LuxR family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158508872|gb|ABW65839.1| two component transcriptional regulator, LuxR family [Desulfococcus oleovorans Hxd3] Length = 214 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 35/72 (48%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + + LTERE LQ+ +G +++IAE L +SV TV Y S KL + Sbjct: 140 RIDQDPLTRVEELTERERQVLQMIAEGIKTKDIAESLHISVKTVETYRSSIMQKLGLFSV 199 Query: 222 IQAIAKAIRFGY 233 + A+R G Sbjct: 200 AELTKFAVREGI 211 >gi|325972574|ref|YP_004248765.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324027812|gb|ADY14571.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 305 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 32/50 (64%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++RE + L +G +++EIA+KL +S +TV ++ + KL+ NR+Q Sbjct: 250 SDREAEIVSLLVEGLSNQEIAKKLFISPNTVKTHIKNIYAKLEVNNRLQL 299 >gi|323356651|ref|YP_004223047.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273022|dbj|BAJ73167.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 221 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + + LT+RE L G +++EIA L +S HT Sbjct: 130 AATRALIEKYVRTTGAADVPSPVSLDALTDREREVLLHVARGRSNDEIAAHLYISPHTAK 189 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + +KL A +R Q + A G + Sbjct: 190 THVKNTMLKLGAHDRAQLVIAAYESGLL 217 >gi|319793534|ref|YP_004155174.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595997|gb|ADU37063.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 255 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 40/85 (47%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H +Q ++ LT RE+ L+ GY S EI E+LG++ TVN ++ Sbjct: 171 HRHAHQGDPAGHAPPPRQPGRDATLTPRESEILRFVACGYVSAEIGERLGITWQTVNVHI 230 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL +R QA+ A+ G I Sbjct: 231 KSIYKKLHVHSRAQAVNFAVHTGLI 255 >gi|23098290|ref|NP_691756.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22776515|dbj|BAC12791.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 207 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +++ + + L T+RE L G +++IA L +S TV ++ Sbjct: 124 LAKLLHEEYVRIANTLQARPEGLLTDREWDILIEIAKGNNNDQIALNLEISDKTVKNHVT 183 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KLD +R A+ A R G+I Sbjct: 184 TILRKLDVNDRTNAMLLAFRKGWI 207 >gi|309791785|ref|ZP_07686273.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308226191|gb|EFO79931.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 205 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 37/86 (43%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G+ + D L + +AA LT RE L L G + IA KL LS TV Sbjct: 114 LAGSAAARVLDLLRRGEGAVAAADLLTPRERDILALLAQGDDNRAIALKLSLSEKTVGNR 173 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L KL NR QA A++ G + Sbjct: 174 LSEIFQKLGVSNRTQAAIVAVQRGLV 199 >gi|282860900|ref|ZP_06269966.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564636|gb|EFB70172.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 231 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 113 IRGGARGYVTKTITGSDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|255599174|ref|XP_002537168.1| Response regulator uvrY, putative [Ricinus communis] gi|223517249|gb|EEF25214.1| Response regulator uvrY, putative [Ricinus communis] Length = 112 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 ++ + L+ERE G ++ EIAE L LS TV +L + Sbjct: 29 ASVAQQMAIQQLSGEQNPVDVLSEREFEVFMSLARGKSTNEIAETLFLSPRTVGTHLYNI 88 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL+A N + A+R G + Sbjct: 89 KQKLNAQNSAEIALIAMRCGLL 110 >gi|149181561|ref|ZP_01860055.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1] gi|148850675|gb|EDL64831.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1] Length = 199 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 NGY++ S LA+ + G EL + LT RE L+L Sbjct: 93 RAGVNGYLLKDSPSEDLADSIRTVMSGKRVYA----PELIEDAYGEGNPLTVREIEVLEL 148 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA++L + TV Y+ + KL NRI+AI ++ G+ Sbjct: 149 VADGKNTKEIADELSIKTGTVRNYISTILDKLQVKNRIEAITQSKEKGW 197 >gi|110680018|ref|YP_683025.1| transcription regulatory protein degU, putative [Roseobacter denitrificans OCh 114] gi|109456134|gb|ABG32339.1| transcription regulatory protein degU, putative [Roseobacter denitrificans OCh 114] Length = 216 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K A LT RE + L G +++++A L +SV TV + + KL + Sbjct: 139 SLQPKEGEAREALTGREQTILLQLAQGKSNKDVATALDISVRTVETHRKNIKRKLGISST 198 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 199 AGLTRYAMEHGVL 211 >gi|168698046|ref|ZP_02730323.1| response regulator receiver [Gemmata obscuriglobus UQM 2246] Length = 232 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS-AARNLTERETSC 181 GYV+ S L + A ++ E +A L++RE Sbjct: 98 AGARGYVLKRSAAEELVQALRAVAAGGVYLEPRLAAQLAEGPAAAPPDSAEALSQREHEV 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY ++EI +L +SV TV Y KL+ +R++ + A G++ Sbjct: 158 LRLLALGYANKEIGARLRISVKTVETYKTRGMEKLNLRSRVELVRYAFERGWL 210 >gi|504484|gb|AAC44880.1| AcoK [Klebsiella pneumoniae] Length = 921 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A + D L+ERE LQL +G ++EIA L +S TV ++ Sbjct: 837 WADKRAPADGTPFNSGSPDIPGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIK 896 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R QA+++A+ + Sbjct: 897 NIYAKLKVNSRTQAMSRALEMKLL 920 >gi|269796958|ref|YP_003316413.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099143|gb|ACZ23579.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 222 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++ EI + L +S TV ++ A +K A +R Q + A G Sbjct: 158 LTEREREITSLVAGGLSNTEIGQHLFISPATVKTHVNRAMMKTGARDRAQLVVFAYDAGL 217 >gi|254262274|emb|CAZ90598.1| Transcriptional regulatory protein uhpA [Enterobacter pulveris] Length = 210 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 13/164 (7%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 P+ + E+ L RL F I + + L Sbjct: 44 SRQPVDVAVLDVAMPDENGLSLLKRLRARRPGFRAIILSIYDTPAFVQSALDAGASGYLT 103 Query: 143 ----NEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 E +++A H C + L + + LT RE L G + Sbjct: 104 KSCGPEELVQAVRSVGMGGHYLCADAL-RALRGGAQPAKVLEVLTPREREIFDLLVKGES 162 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + IA +L LS TV+ + + KL I+ + A+ + Sbjct: 163 VKAIAAQLDLSHKTVHVHRANVLGKLQCATTIELVHFALENQLL 206 >gi|251782925|ref|YP_002997228.1| two-component system response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391555|dbj|BAH82014.1| two-component system response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 198 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LT++E + L+L G TS+EI++ L LS T+ Y S KL NR Sbjct: 126 ELMENLFVNPNPLTQQEMTILRLINQGKTSKEISQLLFLSSGTIRNYSSSIFDKLGVSNR 185 Query: 222 IQAIAKAIRFGYI 234 I+AI A + G++ Sbjct: 186 IEAIRLANKNGWL 198 >gi|254388311|ref|ZP_05003546.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|294814339|ref|ZP_06772982.1| Putative erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|326442730|ref|ZP_08217464.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|197702033|gb|EDY47845.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|294326938|gb|EFG08581.1| Putative erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] Length = 331 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 82/227 (36%), Gaps = 15/227 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L + RL ++ +K A + D + I + + Sbjct: 116 VEQLIGLDAVRDRLVVLTRELKEELMAF-----SPDSALTESAITSSRPLNEELLARGVR 170 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + Y D + I + E + ++ ++ PV Sbjct: 171 MRTIYLDSV----RNSRPSIEHANWLAELGGQVRTVAALPTRMLIVDRGTAVIPVSSDNT 226 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G V+ T + ++ A + EA A L + + LT +++ L L D Sbjct: 227 AAGAVVLTGQGMLTALCALFEATWAAAH------PLAESTTRDPHGLTPQQSVALHLLAD 280 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T + +A++LG+S T +L+A +R +A +A++ G++ Sbjct: 281 GHTDDSVAKRLGVSPRTARRMANDLMERLEARSRFEAGVRAVQRGWL 327 >gi|154684718|ref|YP_001419879.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350569|gb|ABS72648.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 214 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R+ LT RE + +G +++ IA L L+ TV Y+ KL+ NR + Sbjct: 147 EPRTKLKEILTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVSNRTEL 206 Query: 225 IAK 227 Sbjct: 207 TLY 209 >gi|152986923|ref|YP_001348902.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962081|gb|ABR84106.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 924 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 853 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 912 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 913 QAIRRARELSLL 924 >gi|161520265|ref|YP_001583692.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353558|ref|YP_001949185.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] gi|160344315|gb|ABX17400.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337580|dbj|BAG46649.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] Length = 209 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + R +A LT R+ L+ +G ++ IA++LGLS TV A++ + L +NR Sbjct: 138 IEPPRHAAGAPLTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRT 197 Query: 223 QAIAKAIRFGYI 234 QA A + G I Sbjct: 198 QAAAAGRKAGLI 209 >gi|66045180|ref|YP_235021.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63255887|gb|AAY36983.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. syringae B728a] Length = 222 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 41/95 (43%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E ++ LT RE L L G+++ EI EKLG Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNREIGEKLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|311895893|dbj|BAJ28301.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + ++ A + ++ + + LT RET L+L Sbjct: 113 PADLIAAVRVVAAGDALLAPSVTRRLIADFARNRPAPRRDPRLRLNGLTPRETEVLELIA 172 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA L L+ TV ++G KLD +R QA+ A G + Sbjct: 173 RGLSNQEIAAHLVLAEQTVKTHVGRILGKLDLRDRAQAVVLAYESGLV 220 >gi|297161064|gb|ADI10776.1| two-component system regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S LT RET L+ G ++ IA +L +S TV +L A KL +R QA Sbjct: 148 ETAGSTLAMLTMRETEVLRHVAKGRSNSAIARELKISEATVKTHLNRAMTKLGITSRAQA 207 Query: 225 IAKAIRFGYI 234 +A G + Sbjct: 208 VALGYECGLV 217 >gi|261254003|ref|ZP_05946576.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP 102891] gi|260937394|gb|EEX93383.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP 102891] Length = 215 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + S A +LT RE L+ G ++ +IAE + +S TV ++L KL NR+ Sbjct: 144 VDTHTSPATVDLTTREIQILRCLMVGSSNIQIAEDMFISEFTVKSHLQKIFKKLSVKNRV 203 Query: 223 QAIAKAIRF 231 QA A A + Sbjct: 204 QAAAWAKQH 212 >gi|261821966|ref|YP_003260072.1| transcriptional regulator NarP [Pectobacterium wasabiae WPP163] gi|261605979|gb|ACX88465.1| two component transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 210 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 10/133 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 L + I V ++ A E +++A + Sbjct: 71 LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDAIRSSDAFSEQV 130 Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ + R S LTERE LQ G ++++IA L +S TV ++ + Sbjct: 131 RDVLRHRIAIKETPSPFTVLTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLR 190 Query: 215 KLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 191 KLNVRSRVAATVL 203 >gi|271961795|ref|YP_003335991.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504970|gb|ACZ83248.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LT 175 L +G+++ + + + G L + + A LT Sbjct: 90 LRAGASGFMLKDAPGEEIIAAIRHVHRGDSIIAPATTRRLIGRLVAKADTDPDAVLKVLT 149 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE G ++ EI +L LS TV ++G KL +R+QA+ A G + Sbjct: 150 EREREVFLSLARGASNAEIGVELFLSETTVKTHVGRILTKLGLRDRVQAVVLAYESGVV 208 >gi|226304567|ref|YP_002764525.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183682|dbj|BAH31786.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 222 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R+ LT+RET L+L G ++++IA +L LS TV ++ + KL NR Sbjct: 150 APADDRAPELPRLTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANR 209 Query: 222 IQAIAKAIRFGY 233 ++ AI G Sbjct: 210 VELTRYAIEQGL 221 >gi|154503122|ref|ZP_02040182.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] gi|153796116|gb|EDN78536.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] Length = 206 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 31/57 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +ERE ++L DG +++EIA +L LS TV YL S KLD +R Q R Sbjct: 149 SERELEIIRLIADGLSNKEIASRLFLSEGTVRNYLSSILDKLDLRDRTQVAVFYYRH 205 >gi|311895803|dbj|BAJ28211.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 209 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 42/110 (38%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + L + A G + + S LT+RE L Sbjct: 99 SAGATGYLLKAEKPEELFAAIRSAAAGRPALSPPIASRVMAQMRSPLPQLTDREQDILDQ 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G ++EIA L +S TV +LG KL A R A+A A + Sbjct: 159 LGQGLGNKEIARALFISEATVKTHLGRIYAKLGADTRSGAVAIAKERRLL 208 >gi|296123997|ref|YP_003631775.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296016337|gb|ADG69576.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 39/69 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R + A +L+ERET L+L G+ ++EIA KL +S+ TV Y KL R + + Sbjct: 145 GRLTGAESLSERETEVLKLIAAGHMAKEIAAKLDISLKTVETYKSRGMQKLSLRGRTELV 204 Query: 226 AKAIRFGYI 234 A++ G++ Sbjct: 205 RFAMKMGWL 213 >gi|218709897|ref|YP_002417518.1| LuxR family transcriptional regulator [Vibrio splendidus LGP32] gi|218322916|emb|CAV19093.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32] Length = 212 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G +S+EIA+ L +S TV + + KLD + + A+ G Sbjct: 150 PLSRREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVSSG 209 Query: 233 YI 234 + Sbjct: 210 LV 211 >gi|212212606|ref|YP_002303542.1| response regulator [Coxiella burnetii CbuG_Q212] gi|212011016|gb|ACJ18397.1| response regulator [Coxiella burnetii CbuG_Q212] Length = 240 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS--AA 171 G P+RL I S I H I L L K ++ Sbjct: 109 GELLPMRLLEVGVRGFITKSSDSAELERAIRAVHSGQRYIGSAIASRLALSKTTAAKSPF 168 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ R+ L L G +E IA++L ++ TVN++ KL N ++ I A+++ Sbjct: 169 DQLSNRQMEVLLLLAKGMNAESIAKQLHITAKTVNSHRYRMFEKLGVKNDVELIKLAVQY 228 Query: 232 GYI 234 G I Sbjct: 229 GLI 231 >gi|223935483|ref|ZP_03627400.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895893|gb|EEF62337.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 233 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172 + L +GY++ ++ L ++ G +V+ F + + R Sbjct: 106 VFLALEAGADGYLLKRTKPTDLRAALLDVLSGGAPMTSEIARRVVESFRRVSRNRQDTI- 164 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE L + GY+++EIA+K+ LSV TV ++L K+ +R +A+A+ Sbjct: 165 RLSAREEEVLVMLSKGYSNKEIADKIDLSVETVRSHLKHIYEKMHVRSRTEAVAR 219 >gi|152971901|ref|YP_001337010.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896480|ref|YP_002921218.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae NTUH-K2044] gi|150956750|gb|ABR78780.1| putative bacterial regulatory protein, LuxR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548800|dbj|BAH65151.1| putative LuxR-family bacterial regulatory protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + LTERE L G T+ +IA L +S +TV +L + Sbjct: 138 MHPAMYAADHASTPVENSPLTERECEILNELRCGATNLDIARALFISENTVRTHLYNVFR 197 Query: 215 KLDAVNRIQAIAKAIRF 231 KL NR QA++ A Sbjct: 198 KLSVKNRTQAVSWANEH 214 >gi|21902157|gb|AAM78432.1|AF425991_3 putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 154 YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I FL L+ERE L L G + EIAE LGLS T ++ Sbjct: 130 ARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVS 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+A +R Q + A G + Sbjct: 190 RIMGKLEARDRAQLVIVAYESGLV 213 >gi|86148053|ref|ZP_01066355.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] gi|85834186|gb|EAQ52342.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] Length = 212 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G +S+EIA+ L +S TV + + KLD + + A+ G Sbjct: 150 PLSRREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVSSG 209 Query: 233 YI 234 + Sbjct: 210 LV 211 >gi|261880312|ref|ZP_06006739.1| LuxR family transcriptional regulator [Prevotella bergensis DSM 17361] gi|270333002|gb|EFA43788.1| LuxR family transcriptional regulator [Prevotella bergensis DSM 17361] Length = 197 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 1/95 (1%) Query: 141 LANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 ++ + L +S + + L+ RE L L +GY ++EIA +L Sbjct: 98 PEDQFVRSLLMLEQHAHAQGRNLPDMPKSLSVKELSGREIEVLTLIVEGYINKEIAHQLN 157 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + TV + + KL + A+ GY+ Sbjct: 158 IGLTTVITHRKNIMDKLGVKSVSALTIYAVMHGYV 192 >gi|271962480|ref|YP_003336676.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505655|gb|ACZ83933.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 39/110 (35%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + ++ L+ RE L+L Sbjct: 95 DAGATGYLLKACPPEELFQGIRAAARGETVLSPRVATRMMRRMRDPGPALSAREVEILEL 154 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L ++ TV +L KL R A+ A+ I Sbjct: 155 LASGAGNREIARRLFITEATVKTHLVHIYGKLGVDTRTAAVTAAVERRLI 204 >gi|228474840|ref|ZP_04059571.1| transcriptional regulatory protein DegU [Staphylococcus hominis SK119] gi|314935685|ref|ZP_07843037.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] gi|228271503|gb|EEK12871.1| transcriptional regulatory protein DegU [Staphylococcus hominis SK119] gi|313656250|gb|EFS19990.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K + + L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + Sbjct: 145 EKATNDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLNLKSKPE 204 Query: 224 AIAKAIRFGYI 234 + A++ + Sbjct: 205 LVEYALKKKLL 215 >gi|29654272|ref|NP_819964.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA 493] gi|154706559|ref|YP_001424463.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|161830115|ref|YP_001596757.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331] gi|165923366|ref|ZP_02219703.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334] gi|29541539|gb|AAO90478.1| response regulator [Coxiella burnetii RSA 493] gi|154355845|gb|ABS77307.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|161761982|gb|ABX77624.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331] gi|165916692|gb|EDR35296.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334] Length = 217 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS--AA 171 G P+RL I S I H I L L K ++ Sbjct: 86 GELLPMRLLEVGVRGFITKSSDSAELERAIRAVHSGQRYIGSAIASRLALSKTTAAKSPF 145 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ R+ L L G +E IA++L ++ TVN++ KL N ++ I A+++ Sbjct: 146 DQLSNRQMEVLLLLAKGMNAESIAKQLHITAKTVNSHRYRMFEKLGVKNDVELIKLAVQY 205 Query: 232 GYI 234 G I Sbjct: 206 GLI 208 >gi|94314355|ref|YP_587564.1| LuxR family LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358207|gb|ABF12295.1| ATP-dependent transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 904 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 48/100 (48%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + E ++ AC + + R LT +E LQL +GY++ I Sbjct: 804 GAQRDPVLAEFVMRLVQACGPLEESPEPIAGDRPQLLDPLTPKEIRVLQLLAEGYSNSAI 863 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AEKL +S TV +L + K+ A +R QA+A A R G I Sbjct: 864 AEKLFVSDSTVRTHLRNINNKICAHSRTQAVAIARRLGVI 903 >gi|239981289|ref|ZP_04703813.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291453147|ref|ZP_06592537.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291356096|gb|EFE82998.1| two component system DNA binding response regulator [Streptomyces albus J1074] Length = 211 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 48/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L ++ + L+ RET L L Sbjct: 101 AGATGYLLKDAPPEELAEAVRTAAAGRTTLAPAVADRLLRRMRTPGTALSRRETEVLGLV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ I+E+L LS TV ++L KL +R A+A A+ G I Sbjct: 161 AEGMSNLRISERLHLSQATVKSHLVHIYAKLGVDSRTAAVAAALERGLI 209 >gi|239943004|ref|ZP_04694941.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989462|ref|ZP_04710126.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446476|ref|ZP_06585866.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349423|gb|EFE76327.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A+ + A ++IT+F +L + A LTERET L Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAETPRPPALARIGDLTERETEVLV 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA L ++ T+ ++ VKL +R QA A + Sbjct: 169 LIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219 >gi|229820968|ref|YP_002882494.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566881|gb|ACQ80732.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 208 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + S LT RE L+L G +++++A +L LS TV +L KL + Sbjct: 133 RRLLGRMRSPGLALTRRELEVLELVARGRSNDDVARELFLSRATVKTHLAHVYDKLGVDS 192 Query: 221 RIQAIAKAIRFGYI 234 R A+A A + G + Sbjct: 193 RTAAVAVARQRGLL 206 >gi|332703486|ref|ZP_08423574.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332553635|gb|EGJ50679.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 213 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 20/186 (10%) Query: 59 LDSGDIPNILIETYGDDFLFH-FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 + + L S LP W + + L L A Sbjct: 34 QEFSQADTAQVADSRRPLLLWDCLSNNLPKFWTMCSQRAENGNGPCL-------ALINAP 86 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAA 171 + L +NG E ++ +V++ F+ +K A Sbjct: 87 HELTLELQALRNGADGLFRECDPPDLLIKGIASILHGDLWYSREVLSRFVRDERKVRPQA 146 Query: 172 ------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L+ G ++EEIA+ L +S TV + + K+ NRIQA Sbjct: 147 TQSADTSTLTPREREVLERIAAGASNEEIAKNLFISPSTVKTHAYNIYAKIRVPNRIQAA 206 Query: 226 AKAIRF 231 A++ Sbjct: 207 LWAVQN 212 >gi|182437202|ref|YP_001824921.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777832|ref|ZP_08237097.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465718|dbj|BAG20238.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658165|gb|EGE43011.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 222 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A+ + A ++IT+F +L + A LTERET L Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAEAPRPPALARIGDLTERETEVLV 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA L ++ T+ ++ VKL +R QA A + Sbjct: 169 LIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219 >gi|328885463|emb|CCA58702.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 222 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195 ++A + A ++I +F ++R + L TERE L L G G +++EIA Sbjct: 118 RVVARGDALIAPAVTRRLIAEFAGRAERRPDPSPRLNALTEREREVLGLVGAGLSNDEIA 177 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS T ++ KL +R Q + A G I Sbjct: 178 GRLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGMI 216 >gi|303246118|ref|ZP_07332399.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302492514|gb|EFL52385.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 227 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 + ++ QV+ E ++RS LT RE L+ Sbjct: 108 GSAPASLVHALDAVSRGDRYLDGAIVPQVLLKLDEYAERRSRPVDPAYDTLTRREQQILR 167 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G IA +L +S TV + + KL N + + A+R G I Sbjct: 168 LLAEGRGVATIAAELFISRKTVENHRSNIFGKLSFSNMAELVHYAVRMGII 218 >gi|255262411|ref|ZP_05341753.1| transcriptional regulator, LuxR family [Thalassiobium sp. R2A62] gi|255104746|gb|EET47420.1| transcriptional regulator, LuxR family [Thalassiobium sp. R2A62] Length = 253 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 67/232 (28%), Gaps = 11/232 (4%) Query: 7 TGKKSSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDI 64 T + SL+EL + + + L N + + Sbjct: 10 TITNAQSLEELWQQHCDKMAT-YGFDRLIYGYTRQRTNKSLGDIEDMVILTNQPPEYMNQ 68 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES---SGQLSVRLEGGLLPFAGIAFP 121 + W IQ++ + + + + G Sbjct: 69 FLDAGLYDDAPMVNWALENAGACSWSWIQDQIEQGAFSQAEMDVIEFNQKMNTTGGYTVS 128 Query: 122 ---VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTE 176 V + + A + + HG V+ + L L R LT Sbjct: 129 LKSVSARSKGAIALTARQDVSQEAIDQVWHRHGTDLIVMNNVLHLKILTLPHFGGRPLTS 188 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+ L+ GDG T+++IA L + TV +L A L QA+ KA Sbjct: 189 RQREVLEWVGDGKTTQDIATILLRTSATVEKHLRLARDALGVETTAQAVLKA 240 >gi|240142442|ref|YP_002966952.1| hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens AM1] gi|240012386|gb|ACS43611.1| Hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens AM1] Length = 266 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 9/231 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 S+ L +L+ +L +R +A +L ++ A + + + D + Sbjct: 37 STGLDDLARQLDAAADRDRAHRAFGSLAEVSGAARWALAEMRRGGEGGFVFDVLASSSAG 96 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-----FAGIAFPVR 123 + +L W++ + SS S+ L A P+ Sbjct: 97 GDAPIRTVGPCAEDRVLARTWRARDAIELRPSSAGASIAAGLEALLGAVADAAIAVLPID 156 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + V+ + + +L+ RE LQ Sbjct: 157 SPDPSRRVLGVAAAGEGADIRVLRRGFALYGAFFARLRK--EANLPTRVDLSRREIEVLQ 214 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA +L +S HTV ++ A +KLDA N A+A A+R G I Sbjct: 215 RCAHGLKTDAIAAELEVSAHTVREHIDRARLKLDARNLSHAVALAMRAGLI 265 >gi|159185689|ref|NP_357289.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140823|gb|AAK90074.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 256 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + L RS A LT RE L L G ++ IA++L LS +TV ++ + Sbjct: 168 NAVIANRADALAASRSEVA-ALTTREVQILDLLCKGTQNKIIADRLHLSENTVKVHVRNI 226 Query: 213 TVKLDAVNRIQAIAK 227 K++ NR +A ++ Sbjct: 227 YKKMNVRNRTEAASR 241 >gi|126739109|ref|ZP_01754803.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126719726|gb|EBA16434.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 214 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + K LT RE + L G +++E+A L +SV TV + + KL + Sbjct: 135 AMAPKEGETREALTGREQTILLELAQGKSNKEVALHLDISVRTVETHRKNIKRKLGISST 194 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 195 AGLTRYALEHGVL 207 >gi|120403820|ref|YP_953649.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956638|gb|ABM13643.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 207 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G V+ +F + ++ S A LTERET L+ G T+++IA +L LS TV ++ Sbjct: 124 GLAGLVLGEFRRI-ERDSPAGPTLTERETEILRHVAKGLTAKQIASRLSLSHRTVENHVQ 182 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL NR++ AI G Sbjct: 183 ATFRKLQIGNRVELARYAIEHGL 205 >gi|317124103|ref|YP_004098215.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588191|gb|ADU47488.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 238 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++ E+A +L +S TV +LGSA KL NR QA A R G Sbjct: 178 LTERERDVLAGLARGLSNAELARELFVSETTVKTHLGSAFAKLGVDNRAQAAVLADRAGL 237 Query: 234 I 234 + Sbjct: 238 L 238 >gi|296163555|ref|ZP_06846295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. Ch1-1] gi|295886202|gb|EFG66080.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. Ch1-1] Length = 239 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 10/222 (4%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 EL P + A F +++ D + L + + N D Sbjct: 16 ELIPLVRDAIRSKGAEWFVFVSLH-PTDHSASRSTHRFLIGCRPEWCQLYNANRWYLTDP 74 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF-HKNGYVIF 134 L + S P++ + TV + + + + P + G + Sbjct: 75 CLDYARSNTAPVLGSELPVRTV---GQKRMLEVAAEHGFCSTFLIPAHASEKGRIGALYL 131 Query: 135 TSEFLMLA-----NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 S E +++ ++ + L+ ++ + G+ Sbjct: 132 GSSTKPEEGEPKLREGRAFFRALALELLDWSSRAVREDAIRKCGLSHQDVQLIGFVRSGF 191 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + IA++L +S TV K+ + A+ A Sbjct: 192 NAGAIADELKVSSTTVYRQFQRINEKIGVSHITAAVRFAEEN 233 >gi|320011831|gb|ADW06681.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 520 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 3/106 (2%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDG 188 S + + A +++ F + R +LT RE L L G Sbjct: 403 EHLASAVRTVRTGDALLAPAITRRLVQRFARHGGDTADLHRDLASLTPRELEVLGLLARG 462 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ E+A +L L+ TV ++ KL +R+QA+ A G + Sbjct: 463 LSNAELAARLHLAETTVKTHVARVLAKLGLRDRVQAVIVAYETGLV 508 >gi|256395191|ref|YP_003116755.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361417|gb|ACU74914.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 217 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 63/225 (28%), Gaps = 20/225 (8%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-----QLICELHNYDLDSGDIPNIL 68 + + + + + + R+ + L Sbjct: 3 ADDHPMWRDAVARDLAEAGYDVVATAGDGEEAVRRGTAARPQVVVLDMQMPRLSGAEVTA 62 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + + + ++ G + + + Sbjct: 63 RLVAADPDVK-------------VLVLSASGEQQDVLQAVKAGAIGY--LVKSASREELL 107 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + G ++ ++ LT+RET L+L G Sbjct: 108 AAVERIAVGDPVFTPGLAGLVLGEFRKLAMVPPGAGAGTAADTPRLTDRETEVLRLVAKG 167 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + ++IA++L LS TV ++ + KL NR++ + AI G Sbjct: 168 LSYKQIADRLVLSHRTVQNHVQNTLNKLQLHNRVELVRYAIAQGL 212 >gi|269956411|ref|YP_003326200.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305092|gb|ACZ30642.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 220 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A +LTERE L L G G ++ EIA++L +S HT ++ KL A +R Q + Sbjct: 149 PQALEHLTEREVEILTLVGSGLSNAEIADRLVISPHTAKTHVNRVMTKLHAHDRAQLVIA 208 Query: 228 AIRFGYI 234 A G + Sbjct: 209 AYENGLV 215 >gi|159039748|ref|YP_001539001.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918583|gb|ABW00011.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 270 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + + LTERE L +G ++ EI +L +S TV + KL A +R A+ Sbjct: 201 REARPSVGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAV 260 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 261 AAGFRAGLV 269 >gi|296113282|ref|YP_003627220.1| LuxR family transcriptional regulator [Moraxella catarrhalis RH4] gi|295920976|gb|ADG61327.1| LuxR family transcriptional regulator [Moraxella catarrhalis RH4] gi|326560270|gb|EGE10658.1| LuxR family transcriptional regulator [Moraxella catarrhalis 7169] gi|326561965|gb|EGE12298.1| LuxR family transcriptional regulator [Moraxella catarrhalis 46P47B1] gi|326563646|gb|EGE13898.1| LuxR family transcriptional regulator [Moraxella catarrhalis 103P14B1] gi|326565275|gb|EGE15460.1| LuxR family transcriptional regulator [Moraxella catarrhalis 12P80B1] gi|326566412|gb|EGE16562.1| LuxR family transcriptional regulator [Moraxella catarrhalis BC1] gi|326570220|gb|EGE20265.1| LuxR family transcriptional regulator [Moraxella catarrhalis BC8] gi|326570957|gb|EGE20981.1| LuxR family transcriptional regulator [Moraxella catarrhalis BC7] gi|326573253|gb|EGE23221.1| LuxR family transcriptional regulator [Moraxella catarrhalis 101P30B1] gi|326575846|gb|EGE25769.1| LuxR family transcriptional regulator [Moraxella catarrhalis CO72] gi|326576930|gb|EGE26836.1| LuxR family transcriptional regulator [Moraxella catarrhalis O35E] Length = 213 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + V E L +++ S L+ERE + + ++++IA++L +S TVN Y Sbjct: 125 YFSHDVAEQLAETVLGEQKESPFDALSEREKQVAMMVVNCQSTQQIADQLFVSAKTVNTY 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL + ++ AIR G + Sbjct: 185 RYRIFDKLGIDSDVKLTHLAIRHGLV 210 >gi|253987949|ref|YP_003039305.1| LuxR family transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779399|emb|CAQ82560.1| similar to luxr family transcriptional regulators [Photorhabdus asymbiotica] Length = 251 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 76/235 (32%), Gaps = 26/235 (11%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + ++ + L ++ I N +Y + + + + + D + Sbjct: 12 IESVATREFYPNLLTWLKQFIAFDNAIVYAFGQGVP----PRCLTKAEKKNSDVVNQLYQ 67 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D F +G ++ + V + ++L Sbjct: 68 QGAYLQDPFYQALTNGAETDLFTLRELAPVGFYHTDYYLNFYSKTGWQDEAGVLLKLSPQ 127 Query: 128 KNGYVIFTSEFLML--------ANEVIIEAHGACYQVITDFLELFKKRSSAAR------- 172 + + F +E +L + ++E + ++ + + ++ AA Sbjct: 128 RQLGLFFGNENRLLLIQKQHKKSLRTVLEIIRSVARLHDEMML----QAPAAEMVCLDTQ 183 Query: 173 ---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE ++L G S +IAEKL +S TV + + KL ++ + Sbjct: 184 IRYALTPRECEIVELILQGKGSPQIAEKLFISTGTVKNHRKNIYQKLQIRSQAEL 238 >gi|229590397|ref|YP_002872516.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229362263|emb|CAY49165.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] Length = 217 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 40/95 (42%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E S +LT RE L L +G ++ +I E LG Sbjct: 120 RVAAGEEALNTAVSARLLRRMTERNAAGSLPTEHLTPRERQVLGLVANGMSNRQIGEHLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + I G + Sbjct: 180 ITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLV 214 >gi|329937421|ref|ZP_08286979.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329303297|gb|EGG47184.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 229 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 4/106 (3%) Query: 133 IFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + E ++ +++ LT RE + +A +G Sbjct: 110 LLAGLRTVASGEALLSPAATRTLIANFLMSPSPGAQLASPKRLSELTARERETMAMAAEG 169 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIAE L LS TV ++ A KL A +R Q + A + G + Sbjct: 170 MSNSEIAEALVLSPLTVRTHIYRAMAKLGARDRAQLVVIAYQTGLV 215 >gi|148985585|ref|ZP_01818774.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147922305|gb|EDK73426.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800762|emb|CBW33411.1| response regulator protein [Streptococcus pneumoniae OXC141] Length = 199 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 44/92 (47%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G +++EIA++L S Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYFSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ + KLDA NR +A A G++ Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|158318087|ref|YP_001510595.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113492|gb|ABW15689.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L +G ++ EIA +L L TV +++ S KL A +R QA+ A G+ Sbjct: 179 LTDREADVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVLAKLGARDRTQAVIIAYESGF 238 Query: 234 I 234 + Sbjct: 239 V 239 >gi|302864805|ref|YP_003833442.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302567664|gb|ADL43866.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 220 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 28/75 (37%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LTERE L L G +++EIA +L LS T ++ K Sbjct: 137 AARTRHPDPGPRLNALTEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRV 196 Query: 219 VNRIQAIAKAIRFGY 233 +R Q + A G Sbjct: 197 RDRAQLVVLAYESGL 211 >gi|320009015|gb|ADW03865.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 231 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 113 IRGGARGYVTKTITGTDLIDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|117165074|emb|CAJ88627.1| putative two component response regulator-like [Streptomyces ambofaciens ATCC 23877] Length = 223 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D L + +LT RE L L +G ++++IA +LG+S H V + S +KL Sbjct: 144 LLDRLRESGQHRPREVSLTARENEVLLLLAEGMSNKQIARRLGISSHGVKRIVASLLLKL 203 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR A+ AI+ G I Sbjct: 204 GAPNRTAAVVTAIQNGLI 221 >gi|323344011|ref|ZP_08084237.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323094740|gb|EFZ37315.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 213 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 43/98 (43%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + A + Q +T+ L + + R LT ET L+ G T+ EIAE Sbjct: 109 QEIREALSFAMRGRRFICQRMTELLLVPETREQEQVKLTRTETEVLKDIALGMTTREIAE 168 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 K S HTVN + + KL N +A A+R G + Sbjct: 169 KRFSSFHTVNTHRKNIFRKLGVNNVHEATKYALRAGLV 206 >gi|309792191|ref|ZP_07686663.1| two-component transcriptional regulator, LuxR family protein [Oscillochloris trichoides DG6] gi|308225732|gb|EFO79488.1| two-component transcriptional regulator, LuxR family protein [Oscillochloris trichoides DG6] Length = 204 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE +Q +GY++++IA +L LS+ TV Y A KL R + + AI G Sbjct: 141 ELSEREREVVQRVVEGYSNKDIALQLNLSIKTVETYRARALDKLGLSGRAELVRYAIEQG 200 Query: 233 Y 233 + Sbjct: 201 W 201 >gi|307326772|ref|ZP_07605964.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887535|gb|EFN18529.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 41/113 (36%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V G L A + L + L+ERET+ Sbjct: 94 VEAGAAGYLLKDMARAELAEAVRSAARGETVLAPSVAARLMDQLRDRPERPRLSERETAV 153 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EI +L + TV +L A KL +R A+ A+R G + Sbjct: 154 LRLVAQGCTNAEIGRRLFIGESTVKTHLLRAFGKLGVDDRTAAVTSAMRLGLL 206 >gi|255523112|ref|ZP_05390084.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] gi|255513227|gb|EET89495.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] Length = 821 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L G EIA KL +S TV +L + KL + +AI A +G Sbjct: 760 KLSQREIEILTLTVKGLKRSEIAAKLNISEGTVKTHLQNIYKKLQVSGKFEAIKIAQMYG 819 Query: 233 YI 234 + Sbjct: 820 IV 821 >gi|113954975|ref|YP_729804.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113882326|gb|ABI47284.1| possible DNA-binding response regulator [Synechococcus sp. CC9311] Length = 262 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 7/114 (6%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSS-AARNLTERETS 180 V+F S + I + + + K + L+ERE Sbjct: 145 GADGVMFVSSMGTGDGDFINALRTTNNGGIYYPRAVLEAATANVKPAPILVDPLSERELE 204 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +Q G + EIA+ L +S TV +++ + KL +R QA A+ G + Sbjct: 205 VIQCIICGMKNTEIADSLLVSAETVKSHVSTVIHKLGVRDRTQAAVFALTHGLV 258 >gi|22299408|ref|NP_682655.1| transcriptional regulator [Thermosynechococcus elongatus BP-1] gi|22295591|dbj|BAC09417.1| transcriptional regulator [Thermosynechococcus elongatus BP-1] Length = 93 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G T+++IA KL +S TV+ ++ + +K + NR+ + A+ +G Sbjct: 14 LSERELQVLELVAAGLTNQDIAAKLDISKRTVDNHISNILMKTKSENRVALVRWALAWGK 73 Query: 234 IC 235 +C Sbjct: 74 VC 75 >gi|294788302|ref|ZP_06753545.1| nitrate/nitrite response regulator protein NarL [Simonsiella muelleri ATCC 29453] gi|294483733|gb|EFG31417.1| nitrate/nitrite response regulator protein NarL [Simonsiella muelleri ATCC 29453] Length = 220 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + + V + SA LT RE L G++++ IA +L Sbjct: 120 RAVDGDNVFSPEMTARLVQSLIRPHNAGTGSALDTLTPRELEILGHLAAGHSNKIIARQL 179 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ T+ ++ + KL+ +R+QA A++ Sbjct: 180 DLAEFTIKVHVQNILRKLELSSRVQAAVYAVQH 212 >gi|320007637|gb|ADW02487.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 210 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + A+ LT RE LQL Sbjct: 100 AGAGGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAQALTRRELEVLQLV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++++I+++L LS TV ++L KL +R A+A A I Sbjct: 160 GEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 208 >gi|256391489|ref|YP_003113053.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357715|gb|ACU71212.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 253 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 68/209 (32%), Gaps = 7/209 (3%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L +++ + A + R + ++ + +L D + Sbjct: 49 RLLPVLRRTVPADTVLWLAAHERHPATWRAEPPGAVN------AEQAALLAAHADDPLMA 102 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 G +S + + L L + VR + V+F Sbjct: 103 AAWHGPGTATRRSDLQTDHEFHRLPVFPALFAPLGARRQLVMAVRPDEERRIVVLFNRAS 162 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A +++ L F + ++ RE L L G T +IA +L Sbjct: 163 PDFTQHDVAVAEAVRHRI-GRALAPFGGPGARREKVSPREADVLDLLCRGLTDRQIATRL 221 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G+S TV+ +L A VKL R+QA + Sbjct: 222 GISPRTVDKHLEHAYVKLGVRCRVQAATR 250 >gi|212212758|ref|YP_002303694.1| response regulator [Coxiella burnetii CbuG_Q212] gi|212011168|gb|ACJ18549.1| response regulator [Coxiella burnetii CbuG_Q212] Length = 216 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRS--SAA 171 G P+RL I S I H I L L K S Sbjct: 86 GELLPMRLLDVGVRGFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSKTTPTKSPF 145 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ R+ L L G +EEIA++L ++ TVN++ KL N ++ I A+++ Sbjct: 146 DQLSHRQMEVLLLLAKGMKAEEIAKQLHITAKTVNSHRYRMFDKLGVKNDVELIKLAVQY 205 Query: 232 GYI 234 G I Sbjct: 206 GVI 208 >gi|111024941|ref|YP_707361.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|40787253|gb|AAR90170.1| putative two-component system response regulator [Rhodococcus sp. DK17] gi|51338943|dbj|BAD36797.1| hypothetical protein [Rhodococcus sp. RHA1] gi|110823920|gb|ABG99203.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 212 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 11/163 (6%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 LP+ + + +L RL + F ++ L Sbjct: 50 RTLPVDVILLDLRLPDIPAPELIPRLRRVAPHARILLFTAFADHGAIDLLMEAGADGCLV 109 Query: 143 -----NEVIIEAHGAC--YQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTS 191 + H +V+ L ++ ++ LT RE L+ A G ++ Sbjct: 110 KDISGQDFATAIHRVSGGIRVVDPRLAGSRRVVTSEALYRAGLTRREYEVLRFAAMGNSN 169 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA++L L+ +TV YL SA KL+A NR++AIA+A + Sbjct: 170 PEIAQELSLARNTVKTYLQSAMQKLNARNRVEAIARAHELRLL 212 >gi|328884073|emb|CCA57312.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 206 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + + R +A +LT+RE L Sbjct: 96 AGATGYLLKAERPEELFAAIHSAAQGRTALSPPVASRVMDRMRGAAGPSLTDRERDILGQ 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G + EIA L +S TV +LG KL R A+A A + Sbjct: 156 LGRGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKERRLL 205 >gi|299069943|emb|CBJ41227.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum CMR15] Length = 252 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 13/223 (5%) Query: 10 KSSSLQELSPRLHLIQNRIK--ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + ++ +++ + ++ + L +Y + Sbjct: 12 AAETVHDIAAFKAWTREFVRPVVDHQHLACGFGRTTSSGVAMDYVVTVDYPNEHLLAIRN 71 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + + + P+ + E + + A V + Sbjct: 72 TAGGLDTPIMRRWLATRRPVYF---DAAAPWEGTDPAWLEKFVKHGLRNCAADAVFDEVN 128 Query: 128 KNGYVIFTSEFLMLA--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 G + ++ HGA + + + +K S A L+ERE Sbjct: 129 CVGTYYSFHALPSVEPGCLDAMLRDLTPVMHGALLRAVANVESDQQKASEALATLSERER 188 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L G G ++ EIA+ + S +TV YL S K NR+ Sbjct: 189 EVALLIGQGKSNAEIAQLVCKSENTVKHYLSSIMDKTGCENRV 231 >gi|284030413|ref|YP_003380344.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809706|gb|ADB31545.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 208 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 4/99 (4%) Query: 139 LMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + +++A V L L R+ LTERE L+L G G T++E+A Sbjct: 111 TDASPDDLVDAVREVADGRPVFDVSLALAALRAG-DNPLTERECEVLRLIGTGATAQEVA 169 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L LS TV YL K A +RI+AI KA G+I Sbjct: 170 QILCLSPGTVRNYLSRILSKTGARSRIEAIRKAQDAGWI 208 >gi|282862547|ref|ZP_06271609.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562886|gb|EFB68426.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTERETS 180 L G + ++ L + + + V + L + LT RE Sbjct: 101 LDCGVRGCLNKSASRTDLVSSIRAVCADNIRIVLHVSVEALTHIASTADCPDVLTRREME 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L ++ +I+ +L ++ TV +LG+ KL A +R++A+ KA+ G I Sbjct: 161 ILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGLI 214 >gi|206577056|ref|YP_002240258.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342] gi|206566114|gb|ACI07890.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342] Length = 921 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 39/84 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A +V D L+ERE LQL +G ++EIA L +S TV ++ Sbjct: 837 WADKRVPADGTPFNSGSPDIHGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIK 896 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R QA+++A+ + Sbjct: 897 NIYAKLKVNSRTQAMSRALEMKLL 920 >gi|194017154|ref|ZP_03055766.1| response regulator [Bacillus pumilus ATCC 7061] gi|194011022|gb|EDW20592.1| response regulator [Bacillus pumilus ATCC 7061] Length = 199 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S LTERE S L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDLYSDENPLTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|157693347|ref|YP_001487809.1| response regulator [Bacillus pumilus SAFR-032] gi|157682105|gb|ABV63249.1| response regulator [Bacillus pumilus SAFR-032] Length = 199 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S LTERE S L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDLYSDENPLTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|78778542|ref|YP_396654.1| LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712041|gb|ABB49218.1| transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 92 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L DG T++EIA KL +S TV+ ++ + K + NR+ + A+ G Sbjct: 15 GLSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNG 74 Query: 233 YIC 235 IC Sbjct: 75 KIC 77 >gi|29654109|ref|NP_819801.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA 493] gi|153208494|ref|ZP_01946778.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|154707387|ref|YP_001424215.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|212218270|ref|YP_002305057.1| response regulator [Coxiella burnetii CbuK_Q154] gi|29541375|gb|AAO90315.1| response regulator [Coxiella burnetii RSA 493] gi|120575950|gb|EAX32574.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|154356673|gb|ABS78135.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|212012532|gb|ACJ19912.1| response regulator [Coxiella burnetii CbuK_Q154] Length = 216 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRS--SAA 171 G P+RL I S I H I L L K S Sbjct: 86 GELLPMRLLDVGVRGFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSKTTPTKSPF 145 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ R+ L L G +EEIA++L ++ TVN++ KL N ++ I A+++ Sbjct: 146 DQLSHRQMEVLLLLAKGMKAEEIAKQLHITAKTVNSHRYRMFDKLGVKNDVELIKLAVQY 205 Query: 232 GYI 234 G I Sbjct: 206 GVI 208 >gi|87302655|ref|ZP_01085472.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701] gi|87282999|gb|EAQ74956.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701] Length = 237 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 37/75 (49%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L R A L+ RE L+L GY + +IA ++ LSV TV ++L SA KL A Sbjct: 155 ALACRASRDPAGPGLSARELEVLELVVQGYQNPQIASRMHLSVETVRSHLKSAFQKLGAT 214 Query: 220 NRIQAIAKAIRFGYI 234 R A A+ G + Sbjct: 215 GRTHAAVMAVCQGLV 229 >gi|296161929|ref|ZP_06844729.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295887805|gb|EFG67623.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 229 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 44/157 (28%), Gaps = 14/157 (8%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANE 144 L L IA V +I Sbjct: 67 DYAMPSGEYGDGLVLFEYLRRHFPKVGIIALTVMDSPAVIRALISAGVTSILSKSDATGH 126 Query: 145 VIIEAHGACYQVITDFLEL-------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +I H +L + + + L+ RE +L G + +IA + Sbjct: 127 IITAIH--SSYAGGSYLSPTIEQVVNNSETTGDQQPLSPRELEVARLFASGLSMTDIARR 184 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L S TV+ +A KL N ++ I AI G I Sbjct: 185 LNRSKQTVSTQKTTAMRKLGVANDVELIRYAIESGLI 221 >gi|221195955|ref|ZP_03569002.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221202628|ref|ZP_03575647.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221176562|gb|EEE08990.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221182509|gb|EEE14909.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 244 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72 + LH + A FA + + EL Sbjct: 12 AADWQRALHACVDAFDA--FASPSAIVFYRLDASGEPADFELFGMPESMHRTYVA-RYRM 68 Query: 73 GDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D +G ++ + Q + R + +R G Sbjct: 69 LDPLHPSRCAAGARTVVTLASQLPDECRDASAYWTRFLRRHGVADVVEIWLRDDGRTVGA 128 Query: 132 VIFTSEFLMLAN---------------EVIIEAHGACYQVITDFLELFKK--RSSAARNL 174 A + + ++ L + R L Sbjct: 129 FSLLRFDTRGAARGGDGASARFAPGEIDALARLQPLAEAALSPLLRTRRGIHRIECEARL 188 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE +L DG +++EIA L L T+ +L KL NR + + Sbjct: 189 TYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239 >gi|153208911|ref|ZP_01947130.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|212218476|ref|YP_002305263.1| response regulator [Coxiella burnetii CbuK_Q154] gi|120575632|gb|EAX32256.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|212012738|gb|ACJ20118.1| response regulator [Coxiella burnetii CbuK_Q154] Length = 217 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS--AA 171 G P+RL I S I H I L L K ++ Sbjct: 86 GELLPMRLLEVGVRGFITKSSDSAELERAIRAVHSGQRYIGSAIASRLALSKTTAAKSPF 145 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ R+ L L G +E IA++L ++ TVN++ KL N ++ I A+++ Sbjct: 146 DQLSNRQIEVLLLLAKGMNAESIAKQLHITAKTVNSHRYRMFEKLGVKNDVELIKLAVQY 205 Query: 232 GYI 234 G I Sbjct: 206 GLI 208 >gi|37523666|ref|NP_927043.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214671|dbj|BAC92038.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 225 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 106 VRLEGGLLPFAGIAFPVRLGFH-KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 +G F L + + L EV + + ++ Sbjct: 99 WVFRAMQSGASGYVFKTHLAAQLCAAITTVLRDEIYLPPEVATQFFRLFHYYAGHTVQSR 158 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LTERE L G +++EIA L +++ TV A+L + KL +R QA Sbjct: 159 SRIH-----LTEREQEVLHWLVRGASNDEIARNLYITIATVKAHLSAIFEKLQVTSRTQA 213 Query: 225 IAKAIRFGYI 234 I A++ G + Sbjct: 214 IVAALKLGLV 223 >gi|290958054|ref|YP_003489236.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647580|emb|CBG70685.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 297 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 179 IRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 238 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 239 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 297 >gi|159897476|ref|YP_001543723.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890515|gb|ABX03595.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 799 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 72/221 (32%), Gaps = 11/221 (4%) Query: 23 LIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDL-DSGDIPNILIETYGDDFLFH 79 Q+ +A++F A I L P + L Y L Sbjct: 574 AQQDYDQAQHFIEASIAIAEQLHDPWHRAEGLHQLGLIALARQQHDQALTALYESFSLRR 633 Query: 80 FNSGLLPIIWQSIQE-ETVIESSGQLSVRL-----EGGLLPFAGIAFPVRLGFHKNGYVI 133 LLP+I S++ V ++ S + L +G P + + Sbjct: 634 -QHQLLPMIASSLEALARVAQAQHHWSWAVQLSSRAASLRLQSGEPMPATEQRIQQQVLD 692 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + L G ++ L ++ LT+RE L L G ++ E Sbjct: 693 EAKKLLGEPQYHHDWEQGQQLELDMVTLRQPTPQTPT-PLLTKREHELLTLIAQGKSNSE 751 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA +L LS TVN +L + KL R A A G + Sbjct: 752 IALELVLSPFTVNNHLRAIYRKLGVSTRSAAAYIARERGLL 792 >gi|294791176|ref|ZP_06756333.1| two-component system response regulator [Scardovia inopinata F0304] gi|294457647|gb|EFG26001.1| two-component system response regulator [Scardovia inopinata F0304] Length = 258 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +QL GYT +E+A +L +SV TV ++ KL NR + A Sbjct: 196 DVLTSREREVMQLIARGYTYKEVASELFISVKTVETHVSRVLRKLQLSNRGELALWAAHQ 255 Query: 232 GYI 234 + Sbjct: 256 RIV 258 >gi|294811923|ref|ZP_06770566.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324522|gb|EFG06165.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 LM ++ ++ AR LTERE L+L G T+ EIAE+ Sbjct: 135 RLMARSDSLLFPAAVRSLAAEHGARRTAPVPPWARKLTEREADTLRLMAAGLTNGEIAER 194 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G+ TV +++ + K A +R QA+ A G+I Sbjct: 195 MGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 231 >gi|264678688|ref|YP_003278595.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262209201|gb|ACY33299.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 223 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+L GY+S EI+ +L +S TV+ ++ + KL A R A+ A Sbjct: 161 EKLSEREIEILKLIACGYSSPEISTQLKISTMTVSTHVKNMYRKLQAKTRAHAVKAASLR 220 Query: 232 GYI 234 G I Sbjct: 221 GLI 223 >gi|258620181|ref|ZP_05715220.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573] gi|258587539|gb|EEW12249.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573] Length = 216 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|167031823|ref|YP_001667054.1| ATP-dependent transcription regulator LuxR [Pseudomonas putida GB-1] gi|166858311|gb|ABY96718.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudomonas putida GB-1] Length = 905 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A +++ + + L+ RE + L+L G ++++I+E+L +S+HTV Sbjct: 817 AAACPVQAELLKHLPPVPTASTGTGEALSGRELAVLELIAQGCSNQQISERLFISLHTVK 876 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL R QA+AKA G + Sbjct: 877 THASHINSKLGVERRTQAVAKAKTLGLL 904 >gi|113955465|ref|YP_731403.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113882816|gb|ABI47774.1| possible DNA-binding response regulator [Synechococcus sp. CC9311] Length = 243 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L + S LT +E L+ G +++EIA+ L +S+ TV +++ S KL A Sbjct: 155 RHGRLGRALGSIPPELTLKEEDVLRGLCRGMSNQEIADSLVVSIDTVKSHIASLLRKLQA 214 Query: 219 VNRIQAIAKAIRFGYI 234 NR A+ A + G I Sbjct: 215 NNRTHAVVVAFQQGLI 230 >gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] Length = 201 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 38/75 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + A L+ERE L + G TS EIA LGLS TV+ ++ +A KL Sbjct: 125 ARNARPRSPAPAVPLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVA 184 Query: 220 NRIQAIAKAIRFGYI 234 RI+A+ KA G I Sbjct: 185 TRIEAVVKASSAGII 199 >gi|298242112|ref|ZP_06965919.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555166|gb|EFH89030.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 273 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 8/127 (6%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + VR S + + ++++ F L + Sbjct: 152 AAMRAGARGYLLKGVRHEDMVRAIRAVGSGDAIFSP-------AIATRLVSYFSALQPEH 204 Query: 168 SSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S L+ RE L L G + EIAE+L +S TV Y+ + KL +R QAI Sbjct: 205 PSQIFPELSHRERDILALLAQGCKNAEIAERLVVSPKTVRNYVSNIISKLQVADRAQAIL 264 Query: 227 KAIRFGY 233 +A G Sbjct: 265 RAKDAGL 271 >gi|262402371|ref|ZP_06078932.1| DNA-binding response regulator LuxR family [Vibrio sp. RC586] gi|262351153|gb|EEZ00286.1| DNA-binding response regulator LuxR family [Vibrio sp. RC586] Length = 212 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 150 PLSRREEAILRMVAQGCSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 209 Query: 233 YI 234 + Sbjct: 210 LL 211 >gi|149925601|ref|ZP_01913865.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825718|gb|EDM84926.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 237 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L++ G+ EIA+ LG+S++T++ Y+ KL +R A+ +A G Sbjct: 171 PLSEREQQVLEMVAKGFMQAEIADILGVSINTISTYIKRIYKKLAVNSRTSAVHRANALG 230 Query: 233 YI 234 I Sbjct: 231 LI 232 >gi|146280178|ref|YP_001170335.1| hypothetical protein Rsph17025_4179 [Rhodobacter sphaeroides ATCC 17025] gi|145558419|gb|ABP73030.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 232 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + F+ L +R S+ LT +E L G ++EIA+ +GLS TV ++ S K Sbjct: 128 LPAFMRLTPRRHSSDERGLTPKELEVLGGLTIGLMNKEIAQNMGLSEVTVKMHVRSICAK 187 Query: 216 LDAVNRIQAIAKAIRFGY 233 L+ NR QA A +FGY Sbjct: 188 LNVKNRTQAAMVAAQFGY 205 >gi|296138093|ref|YP_003645336.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026227|gb|ADG76997.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 222 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 31/227 (13%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + ++AR F + ++ R + +D +P+ Sbjct: 19 VDDHPMWRDAVARDLEARGFTVAGTADSVAAAGRIAGAVQPTVVLMDM-SLPDGDGAAGT 77 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 L H + I+ S + E V+E+ GY++ Sbjct: 78 TLVLQHAPQAAVLILSASDEREDVVEAV-----------------------KAGACGYLV 114 Query: 134 FTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 ++ L V A G V+ +F + + A LT RET L+L Sbjct: 115 KSASAEELVAAVRATAAHQPVFTPGLAGLVLGEFRRMAAEPEPAGPQLTPRETEVLRLVA 174 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++++IA +L LS TV ++ + KL NR++ A+ G Sbjct: 175 KGLSAKQIATRLHLSHRTVENHVQATLRKLQLGNRVELARYALENGL 221 >gi|302546067|ref|ZP_07298409.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463685|gb|EFL26778.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L G+ ++EIA +L +S TV ++ A KL A +R Q + Sbjct: 155 ASRLDALTGREREVLVQVAGGHPNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 214 Query: 228 AIRFGYI 234 A G + Sbjct: 215 AYETGLV 221 >gi|134097815|ref|YP_001103476.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005549|ref|ZP_06563522.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910438|emb|CAM00551.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 217 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 43/97 (44%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++ V E ++ S+ R+LTERE L G+G ++ +IAE+ Sbjct: 119 RVAADGHTVLSLEATRRLVAASADEHGQRASALVRDLTEREREVLACLGEGLSNAQIAER 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV ++ KL NR QA A G + Sbjct: 179 LFLSEATVKGHVSRTMTKLRCTNRTQAGLLAYDAGLV 215 >gi|186470703|ref|YP_001862021.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197012|gb|ACC74975.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 219 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 15/135 (11%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVIT-------- 158 + + + V + L ++ E + + Sbjct: 72 MRQHGVDARFLMLTVSDNERDVVAALRAGASGYLLKDMEPEELCLNLQKALQGTAVLSEA 131 Query: 159 ------DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L + + NL+ RE L +G ++EIA KL +SV TV ++ Sbjct: 132 VTGKLFHALSAGQPLPANQSNLSVREQEVLDYLVEGMCNKEIARKLDISVGTVKVHVKHL 191 Query: 213 TVKLDAVNRIQAIAK 227 KLD +R++A+ Sbjct: 192 LHKLDLHSRVEAVVW 206 >gi|284989608|ref|YP_003408162.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062853|gb|ADB73791.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 212 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + LA+ V A G L + R+ AA T RE L Sbjct: 97 AGATGYLLKDAPLPQLADAVRAAARGETVLAPPVAARLVSRLRAPAAEAPTARELEVLAG 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI +L + TV +L KL +R +A+ A+ G + Sbjct: 157 VARGLTNAEIGRELFIGEATVKTHLLRVFAKLGVDDRTRAVMVAVERGLL 206 >gi|295701248|ref|YP_003610249.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295441571|gb|ADG20738.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 210 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 13/165 (7%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 + + S L R+ + + + L Sbjct: 44 RSRAVDLLLLDMTMPGISGIVLIRRVRAEHPSLPVLVLSIHDEAQVASRALRAGATGYLT 103 Query: 143 NEVIIEAHGACYQVITDFLEL-------------FKKRSSAARNLTERETSCLQLAGDGY 189 + E A + + + + + L++RE LQ+ G Sbjct: 104 KDSDPEVLLAAIRKLAEGGRFLDPKLVDALVFDTQRDDVPPHKVLSDREFQVLQMLAAGR 163 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIAE LS T++ + KL N + I AIR G I Sbjct: 164 SINEIAETCTLSAKTISTHKMRLMRKLGLSNNAELIRYAIRHGLI 208 >gi|150019634|ref|YP_001311888.1| two component LuxR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149906099|gb|ABR36932.1| two component transcriptional regulator, LuxR family [Clostridium beijerinckii NCIMB 8052] Length = 218 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE + + DG ++EIA L ++ TV + KL +R Q A++ G Sbjct: 157 SLTERELKIVSMIVDGKDNKEIASSLFIAEGTVKNIITEIISKLSLRDRTQLAVYAVKNG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|302184842|ref|ZP_07261515.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae 642] gi|330954520|gb|EGH54780.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7] Length = 222 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 41/95 (43%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E ++ LT RE L L G+++ EI EKLG Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNREIGEKLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|289768678|ref|ZP_06528056.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698877|gb|EFD66306.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R +TERE L+L +G+TS+EI E L +S TV + + KL +R++ AI Sbjct: 154 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAI 213 Query: 230 RFGYI 234 R G I Sbjct: 214 RAGLI 218 >gi|284030063|ref|YP_003379994.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809356|gb|ADB31195.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I + +R+ A L+ RE + G ++EE+A +L LS+ TV YL Sbjct: 132 ITRRLIAEVSRGRTRRTPEAFEQLSPRELELVGAVLRGLSNEELAAELFLSLSTVKTYLS 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 KLD +R Q + A G Sbjct: 192 RIFSKLDVRDRTQLVILAYESGL 214 >gi|284990521|ref|YP_003409075.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063766|gb|ADB74704.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 232 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A LTERE + L G ++E+IA +L LS TV ++ A KL A +R Q + A Sbjct: 159 AALDVLTEREREMVALVAHGLSNEDIAARLHLSPLTVKTHVNRAMSKLRARDRAQLVVLA 218 Query: 229 IRFGYI 234 + G + Sbjct: 219 YQTGLV 224 >gi|182414741|ref|YP_001819807.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177841955|gb|ACB76207.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 223 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L ++ + LTERE L+ G +++EIA L +S TV ++L + KL +R Sbjct: 150 RLTER--AQREQLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHLKTLFAKLRVRDR 207 Query: 222 IQAIAKAIRFGYI 234 A +AIR G + Sbjct: 208 TGAAIEAIRHGIV 220 >gi|146281277|ref|YP_001171430.1| two-component response regulator NarL [Pseudomonas stutzeri A1501] gi|145569482|gb|ABP78588.1| two-component response regulator NarL [Pseudomonas stutzeri A1501] gi|327479436|gb|AEA82746.1| two-component response regulator NarL [Pseudomonas stutzeri DSM 4166] Length = 202 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 17/144 (11%) Query: 105 SVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEFLMLANEVIIEAHGACY- 154 + R+ + I F V +GY++ + L ++ I A G Sbjct: 55 TRRMRDADIDARIIMFTVSDEQSHVLEALRNGADGYLLKDMDAEELIEQIRIAATGRMAL 114 Query: 155 -----QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 QV+ + + + K + + +LT+RE L+ G +++ IA KLG++ TV Sbjct: 115 SPELTQVLAEAIRVRPKPTGQVQFSSLTKREKEVLRQIAKGQSNKMIARKLGITEGTVKV 174 Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231 ++ + KL +R++A + Sbjct: 175 HVKNLLHKLGLRSRVEAAVWVLEN 198 >gi|307327290|ref|ZP_07606477.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886969|gb|EFN17968.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%) Query: 133 IFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + E ++ +++ + LT RE + LA +G Sbjct: 114 LLAGLRTVASGEALLSPAATRTLITNFLMSPAPDAHLAPPERLSELTGREREVMGLAAEG 173 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ EIAE L LS TV ++ A KL A +R Q + A + G Sbjct: 174 RSNTEIAEILTLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218 >gi|290954729|ref|YP_003485911.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260644255|emb|CBG67336.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + ++ + + ++ + K + + LTERET L L Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFARQRPAVRGKPALRLKRLTERETEVLTLVA 172 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA+ L L+ TV ++ KLD +R QA+ A G + Sbjct: 173 RGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220 >gi|297569017|ref|YP_003690361.1| two component transcriptional regulator, LuxR family [Desulfurivibrio alkaliphilus AHT2] gi|296924932|gb|ADH85742.1| two component transcriptional regulator, LuxR family [Desulfurivibrio alkaliphilus AHT2] Length = 207 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 144 EVIIEAHG----ACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 E I E H ++ +E +K S L+ RE ++ G++ ++IA KL Sbjct: 112 ESIQELHLGGAPMSPKIARRLIMEFREKGSLQQNLLSTREVEIIREVEKGFSYKDIAAKL 171 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S HTV++++ KL A++R AI KA + G + Sbjct: 172 FISPHTVHSHIKKIYEKLHAMDRQDAILKARKCGLL 207 >gi|256786258|ref|ZP_05524689.1| response regulatory protein [Streptomyces lividans TK24] gi|289770149|ref|ZP_06529527.1| response regulatory protein [Streptomyces lividans TK24] gi|289700348|gb|EFD67777.1| response regulatory protein [Streptomyces lividans TK24] Length = 223 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 35/109 (32%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + LT+RE L Sbjct: 114 AGATGYLLKAERPEELFAAIHAAAQGRTALSGPVAGRVMANLRKPRPALTDRERDILAQL 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +L KL R A+A A + Sbjct: 174 ATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 222 >gi|254507039|ref|ZP_05119177.1| transcriptional regulator [Vibrio parahaemolyticus 16] gi|219550034|gb|EED27021.1| transcriptional regulator [Vibrio parahaemolyticus 16] Length = 212 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G++S+++A L +S TV + + KLD + + A+ G Sbjct: 150 PLSRREEAVLKLVAQGHSSKKVAAMLNISYRTVETHRQNIKHKLDLHSTAELAKYAVERG 209 Query: 233 YI 234 + Sbjct: 210 LV 211 >gi|297194468|ref|ZP_06911866.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718721|gb|EDY62629.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + + + A E ++ +V++ + LT+RE L L Sbjct: 114 RPADLLAAIRTVAAGESLLSPGPTSRLIARVLSAPQVPAANGAGGPDVLTDRERQVLTLV 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE LGLS T ++ KL A +R Q + A G + Sbjct: 174 ARGLNNTEIAESLGLSPLTAKTHVSRIMSKLCARDRAQLVIVAYESGLV 222 >gi|29830013|ref|NP_824647.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607123|dbj|BAC71182.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 125 IRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 184 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 185 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 243 >gi|304439372|ref|ZP_07399284.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372154|gb|EFM25748.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 208 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++EIAE LG+S++TV ++ K +R Q +A G+ Sbjct: 144 LTPREIQVLRLLTTGVGNDEIAESLGISLNTVKTHIQHLLDKTGFTSRTQLAIQARVTGF 203 Query: 234 I 234 + Sbjct: 204 V 204 >gi|302531315|ref|ZP_07283657.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440210|gb|EFL12026.1| two-component system response regulator [Streptomyces sp. AA4] Length = 218 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 151 GACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G V+ ++ + + LT+RET L+L G T+ +IAE+L LS TV + Sbjct: 131 GLAGLVLGEYRRMADAPDGAPEPPRLTDRETDVLRLVAKGLTARQIAERLVLSHRTVENH 190 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + S KL NR++ AI G Sbjct: 191 VQSTLRKLQLHNRVELARYAIEHGL 215 >gi|254423092|ref|ZP_05036810.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190581|gb|EDX85545.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 212 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V G + ++L ++ + LT RE L++ Sbjct: 101 AGARGYLLKDATSQELTQAVRQVYQGKRFIPADVAMKLAERIE--SDELTAREIDVLEMM 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +++E L +S TV ++ + KL+A +R QA+ A+ G + Sbjct: 159 VQGSSTAKLSEALHISEGTVKFHVNNILQKLNAHDRTQAVVTALHRGIV 207 >gi|220926479|ref|YP_002501781.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951086|gb|ACL61478.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 509 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 5/100 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEE 193 + V+ + VI L + LT RE L L G ++ E Sbjct: 396 IAAIEAVMQDTSWFSRTVIEKLAHLRRPNRPDKPEAGLSDLTPRELEVLGLMCRGLSNAE 455 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 I +KLG++ +TV ++ K+D +R A+ A G+ Sbjct: 456 IVKKLGVTHNTVRNHIARIYAKIDVHDRAGAVVWARERGF 495 >gi|56697420|ref|YP_167788.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56679157|gb|AAV95823.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 216 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 1/117 (0%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 I+ + G +E + A + ++ LE + + LT R Sbjct: 94 ISTALSHGAMGYVLKDVPTEEIKQAIDAVMRGERYLCTGAKGSLEPKEGEEAR-EALTGR 152 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G +++E+A L +SV TV + + KL + A+ G + Sbjct: 153 EQTILLQLAQGKSNKEVAIALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 209 >gi|294787163|ref|ZP_06752416.1| two-component system response regulator [Parascardovia denticolens F0305] gi|315227300|ref|ZP_07869087.1| two component system response regulator [Parascardovia denticolens DSM 10105] gi|294484519|gb|EFG32154.1| two-component system response regulator [Parascardovia denticolens F0305] gi|315119750|gb|EFT82883.1| two component system response regulator [Parascardovia denticolens DSM 10105] Length = 283 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +QL GYT +E+A +L +S+ TV ++ KL NR + A Sbjct: 221 DVLTSRERQVMQLIARGYTYKEVASELFISIKTVETHVSRVLRKLQLSNRGELALWAAHQ 280 Query: 232 GYI 234 + Sbjct: 281 RIV 283 >gi|158335395|ref|YP_001516567.1| hypothetical protein AM1_2240 [Acaryochloris marina MBIC11017] gi|158305636|gb|ABW27253.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 469 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 64/163 (39%), Gaps = 7/163 (4%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE- 137 H +L + + + + + S + + + + K+ + Sbjct: 307 HCQQSVLQLAFTHLCLQAGLNLKEMTSAKTAESNCQEVLLTDRLDIPSSKSPIIWIQHSP 366 Query: 138 --FLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTS 191 + A + ++ Q+ T ++ + +++ A L++RE ++L G Sbjct: 367 RGQIPAAAQAVVTLDIIPQQLYTVVAQVSQGQAALPELIAPTLSDREQEIMRLLSQGLRD 426 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA +L +S TV ++ + KL A NR QA+ +A +I Sbjct: 427 RDIANRLHISESTVRFHVNNTLTKLKAKNRYQAVYEATSREWI 469 >gi|170721041|ref|YP_001748729.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169759044|gb|ACA72360.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 82 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + ++ ++ LT RE L G +S EI + L TVN ++G+ K D Sbjct: 3 ANTQQIEDSQADTPIRLTPREQQVLLWCAYGKSSWEIGQILQCQESTVNFHVGNILRKFD 62 Query: 218 AVNRIQAIAKAIRFGYI 234 R+ A+ KAIR+G + Sbjct: 63 VSTRVAAVIKAIRYGML 79 >gi|282862559|ref|ZP_06271620.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562245|gb|EFB67786.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 225 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177 +G+V+ + L GA +I ++L + + AR +TER Sbjct: 107 AGASGFVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNYLDRVREGGDVPARAITER 166 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G++S+EIA L +SV TV + + KL +R++ AIR G I Sbjct: 167 EEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 223 >gi|256378098|ref|YP_003101758.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922401|gb|ACU37912.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 225 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%) Query: 139 LMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNL---TERETSCLQLAGDGYTSEEI 194 ++A + A +++ F L + A L TERE L L G ++ E+ Sbjct: 122 RVIAAGDAVVAPRVTRRLLDRFAGRLDTAPAPADDRLDVLTEREREVLVLVARGLSNVEL 181 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE++ ++ TV +LG KL +R+QA+ A G + Sbjct: 182 AERMHVAEATVKTHLGRVLTKLGLRDRVQAVVLAYELGLV 221 >gi|257067005|ref|YP_003153261.1| two component transcriptional regulator, LuxR family [Anaerococcus prevotii DSM 20548] gi|256798885|gb|ACV29540.1| two component transcriptional regulator, LuxR family [Anaerococcus prevotii DSM 20548] Length = 198 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+ G ++IA+KL +S T+ ++ + KL A N ++A KA+ Sbjct: 132 DPLTNRELEVLEELIKGSRKKDIAQKLYISERTLYNHIANIYEKLGAKNIVEAYNKAMEL 191 Query: 232 GYI 234 GYI Sbjct: 192 GYI 194 >gi|268593225|ref|ZP_06127446.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131] gi|291311274|gb|EFE51727.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131] Length = 208 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 13/160 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 I + E+ QL RL F I + G + ++ Sbjct: 48 IDVAIMDISMPDENGLQLLSRLRQKKPDFRTIILSIYDTPAFVQSALDAGASAYLTKRCG 107 Query: 141 LA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 V C + L ++ + + LT RE L G + + I Sbjct: 108 PEELVQAVRSVHQGGCYLCADAM-RALRHSPQQQQSLQELTPREREVFDLLVAGLSVKVI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+L LS TV+ + + KL N I + A+ I Sbjct: 167 AEQLELSHKTVHVHRANILGKLQCENTIDLVHYALEHNLI 206 >gi|254426902|ref|ZP_05040609.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] gi|196193071|gb|EDX88030.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] Length = 216 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + + K S + +LT+RE L++ G + EIA L LS HT Sbjct: 129 ELWFPRAVLQTYLMKSRTFNKTFSRSEVSLTDREVEVLKVMATGAKNSEIASSLNLSPHT 188 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRF 231 + ++ + K++A NR+QA+ A Sbjct: 189 IKTHIYNIFKKINASNRLQAVNWAQEN 215 >gi|83644295|ref|YP_432730.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632338|gb|ABC28305.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 902 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L++RET+ L G ++EEIA L ++ TV +L + K R QA+A Sbjct: 836 SPLMEELSQRETTILNHLSAGRSNEEIAVALNIAASTVKTHLRNIYAKFGVRRRTQALAI 895 Query: 228 AIRFGYI 234 A G + Sbjct: 896 AREKGLV 902 >gi|117928597|ref|YP_873148.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649060|gb|ABK53162.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 225 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 13/166 (7%) Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG--------FHKNGYVI 133 + P + S L L P + GY++ Sbjct: 59 RSVGPCDVCIVDVGLPDGSGLDLIAELRAAGWPRLVVLSAADDPYSVRAAFVAGAQGYLL 118 Query: 134 FTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDG 188 ++ +++ + V G + L + +++ L+ RE L+L DG Sbjct: 119 KSASPVVVTDGVRRVLDGGVYADPAVASLLAAGLRNNASNEGIGDLSSREIEVLRLVADG 178 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++EI ++LGLS TV ++L KL +R + +A A+R G I Sbjct: 179 RSNKEIGDQLGLSALTVKSHLARIARKLGTGDRAEMVALAMRAGII 224 >gi|295400759|ref|ZP_06810736.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294977340|gb|EFG52941.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 185 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S+ LT E LQ + T+ EI+E L +S TV ++ S KLD +R+ Sbjct: 114 ADRLSNYHPPLTNVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVG 173 Query: 224 AIAKAIRFGYI 234 A+ KA++ G + Sbjct: 174 AVVKAMKLGIL 184 >gi|294628934|ref|ZP_06707494.1| two-component system response regulator [Streptomyces sp. e14] gi|292832267|gb|EFF90616.1| two-component system response regulator [Streptomyces sp. e14] Length = 226 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 RS LT RE L G++++EIAE+L +S TV ++ A KL A +R Q Sbjct: 151 DPARSGRLEALTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQ 210 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 211 LVVIAYESGLV 221 >gi|89899800|ref|YP_522271.1| ATP-dependent transcription regulator LuxR [Rhodoferax ferrireducens T118] gi|89344537|gb|ABD68740.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Rhodoferax ferrireducens T118] Length = 930 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 6/154 (3%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 +G +P I + P G H +G + Sbjct: 782 RTGDMPAAVTEIGTALQFACQEGFMRLILDE-GPAVGALVQRYQSLHDSGQM-----RDP 835 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L + + A + T+ + LT +E LQL +GY++ +AEKL + Sbjct: 836 LLGDYLQRLLQAFGPLPTEIEATPELLGGVLEPLTRKEIRVLQLLVEGYSNSAMAEKLFV 895 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV +L + +K A +R QA+A A R G I Sbjct: 896 SDSTVRTHLRNINMKFGAHSRTQAVAIARRLGLI 929 >gi|21222669|ref|NP_628448.1| response regulatory protein [Streptomyces coelicolor A3(2)] gi|8248775|emb|CAB93036.1| putative respose regulatory protein [Streptomyces coelicolor A3(2)] Length = 223 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 35/109 (32%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + LT+RE L Sbjct: 114 AGATGYLLKAERPEELFAAIHAAAQGRTALSGPVAGRVMANLRKPRPALTDRERDILAQL 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +L KL R A+A A + Sbjct: 174 ATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 222 >gi|21222167|ref|NP_627946.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256786745|ref|ZP_05525176.1| two component system response regulator [Streptomyces lividans TK24] gi|289770639|ref|ZP_06530017.1| two component system response regulator [Streptomyces lividans TK24] gi|10432460|emb|CAC10294.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289700838|gb|EFD68267.1| two component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 3/108 (2%) Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + ++ + + ++ K + + LTERET L L Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFAQQRPASRGKPALRLKGLTERETEVLTLVA 172 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA L L+ TV ++ KLD +R QA+ A G + Sbjct: 173 RGQSNTEIARTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220 >gi|254254914|ref|ZP_04948231.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158] gi|124899559|gb|EAY71402.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158] Length = 510 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 23/170 (13%) Query: 88 IWQSIQEETVIESS-------GQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFT 135 +W I+ VR+ + ++ Sbjct: 322 LWAERDARQRIDEQLARDGSVRSADVRIRTLDGDVRDCVVSAEPVAIHGQDCLLIALLDI 381 Query: 136 SEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQL 184 S+ E+ + +A +I + + A LT RE L Sbjct: 382 SDRKRTEMELVYAIETAMQDASWFSRTLIEKLANARRANAPDAGAQLSDLTARERDVFDL 441 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA +LGL+ +TV ++ + KLD +R +AI A G + Sbjct: 442 LCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491 >gi|300788854|ref|YP_003769145.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798368|gb|ADJ48743.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 210 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 10/153 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AH 150 + + ++ L + F + + L + Sbjct: 58 LDLRLPDMLAPEVVTELRRVHPEGKIVVFTAHGDHQGVLAALESGAHGCLLKDAAGAQLV 117 Query: 151 GACYQVITDFLELFKKRSSAA---------RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 +V+ + + A LT RE L+LA G T+ EIAE GL+ Sbjct: 118 TELRRVLRGERVVDPRILPDAGQRSDALARSGLTRREYEVLRLAAQGQTNPEIAESTGLA 177 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +TV YL SA KL A NR++AI KA G + Sbjct: 178 RNTVKTYLQSALHKLGARNRVEAIGKASEAGLL 210 >gi|290962896|ref|YP_003494078.1| two-component regulator [Streptomyces scabiei 87.22] gi|260652422|emb|CBG75555.1| putative two-component regulator [Streptomyces scabiei 87.22] Length = 222 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 4/135 (2%) Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + AG + F ++ + G + ++A + A + Sbjct: 84 FDLDEYAYDGLRAGASGFLLKDARPEELVAGIHAVATGDAVVAPSLTRRLLDAYAHQVLA 143 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +L+ERE L G G+T+ EIAE+L L+ TV ++G K+ A Sbjct: 144 PSGTAPAADPRLESLSEREHEVLVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGAR 203 Query: 220 NRIQAIAKAIRFGYI 234 +RIQA+ A G + Sbjct: 204 DRIQAVITAYDAGLV 218 >gi|290960962|ref|YP_003492144.1| response regulator [Streptomyces scabiei 87.22] gi|260650488|emb|CBG73604.1| putative response regulator [Streptomyces scabiei 87.22] Length = 225 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 4/127 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 L G F G L V L A + L ++ Sbjct: 97 LRSGASGFLGKDVTADLLLDGIRTVAAGDTLLSPAATRTLITRFLAAPAPGSRLTTPERL 156 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE + LA +G +++EIAEKL +S TV ++ A KL A +R Q + Sbjct: 157 T----TLTSREREVMSLAAEGSSNDEIAEKLYVSPLTVRTHVHRAMTKLGARDRAQLVVM 212 Query: 228 AIRFGYI 234 A + G + Sbjct: 213 AYQSGLV 219 >gi|289825364|ref|ZP_06544608.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 146 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 I +R G + + ++E + A + Sbjct: 6 CARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIPFSSEERLRAQAVQPLLG 64 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + ++ + A LT +E + + +G +++ IA +L +S+ TV +L + K + Sbjct: 65 LAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTE 124 Query: 218 AVNRIQAIAK 227 +NR + +++ Sbjct: 125 VINRTELVSR 134 >gi|270307800|ref|YP_003329858.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270153692|gb|ACZ61530.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 232 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQLA G ++ EIA+KL LS+ TV A+L + K+ R +AI K R G Sbjct: 154 QLSPREVEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 Query: 233 YI 234 Y+ Sbjct: 214 YV 215 >gi|126737738|ref|ZP_01753468.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126721131|gb|EBA17835.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 251 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 72/229 (31%), Gaps = 12/229 (5%) Query: 11 SSSLQEL-SPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + SL+EL + + YT L N++ D + Sbjct: 13 AQSLEELWHNHVQQMSE-YGFDRLMYGYTRYKTETSLGDPDDFLILTNHNQDYVNGFLNN 71 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETV---IESSGQLSVRLEGGLLPFAGIAFPVRLG 125 + L WQ IQ+ ++S + V AG Sbjct: 72 GLYFHAPMLRWALENEGAGSWQKIQQMAEQNMLDSKARRVVEFNQSQGMSAGYTVSFFSA 131 Query: 126 FHKNGYVIFTSEFLMLANEVI---IEAHGACYQVITDFLELFKKRSS---AARNLTERET 179 + I + + G ++ + + L R LT+R+ Sbjct: 132 SKRYKGAISLGAKKGIDQREVDSAWREQGDDIVLMNNVVHLKILTLPYETPNRTLTKRQK 191 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LQ GDG T+++IA +GL+ TV +L A L QA+ KA Sbjct: 192 EALQWVGDGKTTQDIALLMGLTAATVEKHLRLARESLSVETTAQAVLKA 240 >gi|328883448|emb|CCA56687.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 220 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LTERET L L G ++ EIA+ L ++ T+ ++ VKL +R Sbjct: 144 SPRPPAMAQIGELTERETEVLVLIAQGLSNAEIADHLVVAESTIKTHVSRILVKLALRDR 203 Query: 222 IQAIAKAIRFGYI 234 QA A G + Sbjct: 204 TQAAVFAYEAGLV 216 >gi|307332571|ref|ZP_07611620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306881779|gb|EFN12916.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G ++ EIAE+L ++ TV ++ VKL +R QA A Sbjct: 166 ELTERENEVLVLVAQGCSNAEIAERLIVAESTVKTHVSRILVKLGLRDRTQAAVFAYEAR 225 Query: 233 YI 234 + Sbjct: 226 LV 227 >gi|224825157|ref|ZP_03698263.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224602828|gb|EEG09005.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 215 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GYV+ + + + G Y L + + LTERE L L Sbjct: 105 RAGARGYVLKDAPSQEIIAAIEAAVAGGSYYSHAVTHALIE-PAPQPDPLTEREREVLLL 163 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++ +A L +SV TV A+ + KL A N + A+ G+I Sbjct: 164 LAAGHSNKMVAASLEISVRTVEAHRLNLRRKLGAENVAALVKYAMERGWI 213 >gi|196040971|ref|ZP_03108268.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196028139|gb|EDX66749.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 71 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 10 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 69 Query: 233 YI 234 +I Sbjct: 70 WI 71 >gi|220926584|ref|YP_002501886.1| two component LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951191|gb|ACL61583.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 270 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + D L +L+ERE L + G +++ IA +L ++ TV ++ S K Sbjct: 166 AVPDGKRLADNLQINMPHLSERERLILTMLASGSSNKVIARRLDVTEATVKVHVKSILRK 225 Query: 216 LDAVNRIQAIAKAIRFGYI 234 + NR QA A + G + Sbjct: 226 IRVSNRTQAAIWATKNGIV 244 >gi|86355727|ref|YP_467619.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86279829|gb|ABC88892.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 260 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + L+L + SA LT RE L L G ++ IA+KL LS +TV ++ + Sbjct: 173 AARNNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYK 229 Query: 215 KLDAVNRIQAIAK 227 K++ NR +A ++ Sbjct: 230 KMNVRNRTEAASR 242 >gi|21224130|ref|NP_629909.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|256784790|ref|ZP_05523221.1| two-component regulator [Streptomyces lividans TK24] gi|2995293|emb|CAA18322.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R +TERE L+L +G+TS+EI E L +S TV + + KL +R++ AI Sbjct: 153 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAI 212 Query: 230 RFGYI 234 R G I Sbjct: 213 RAGLI 217 >gi|320107298|ref|YP_004182888.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925819|gb|ADV82894.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 204 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + I H +V + + + + L+ RE L+ G++++ IA L LS H Sbjct: 113 DTIRSVHAGIRRVPAEIAAMMAEHAG-DEALSPREVEVLRHVSAGHSNKVIASDLDLSEH 171 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ +L + KL A +R A+ A+ G++ Sbjct: 172 TIKGHLKNILSKLGANDRTHAVMIALNRGFL 202 >gi|302337778|ref|YP_003802984.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634963|gb|ADK80390.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 264 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +I+ ++ + +K + L+ RET L G T+ EI + L Sbjct: 172 FRIILLLCAVFASLMLNGPRYRQKEGTEEFAKDYALSPRETEITALLLQGKTNAEICQSL 231 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +S+ TV ++ S K A NR + A R G Sbjct: 232 FISLATVKTHIASIFRKTGARNRTELSAL-FRNG 264 >gi|238061662|ref|ZP_04606371.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883473|gb|EEP72301.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 4/103 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGY 189 + + L+ + + ++ A +++ F + R LT RE L+L +G Sbjct: 114 LVAAVRLVRSGDALL-APAITRRLVERFARRDTDTPAIHRDLSALTARELEVLRLLAEGL 172 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ E+AE+L LS TV +++ KL +R+QA+ A R G Sbjct: 173 SNAELAERLHLSEATVKSHVARILAKLGLRDRVQAVVVAYRTG 215 >gi|218295514|ref|ZP_03496327.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218244146|gb|EED10672.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 192 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + ++ ++ + +LT RE L L G + +E+A+ LGLS TV +L + K Sbjct: 113 LLRVMQGEERLTPPDLPSLTPREGEVLALLAQGLSVKEMAKALGLSPDTVKDHLENLYAK 172 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L+A NR++A+ KA G++ Sbjct: 173 LEARNRVEALEKARSLGFL 191 >gi|118470646|ref|YP_887553.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171933|gb|ABK72829.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 219 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 14/220 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + F + + R+ + +D + + Sbjct: 12 VDDHPIWRDAVARDLADDGFDVVATADGVASASRRAAVVRPDVVLMDM-RLGDGSGAQAT 70 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + L + ++ S + + V+++ AG + + Sbjct: 71 AEVLAVSPRSRVLVLSASDERDDVLQA-------------VKAGATGYLVKSASRTELAD 117 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 G + + A LTERET L+ G T+++ Sbjct: 118 AVRATAEGRAVFTPGLAGLVLGEYRRIAQQPAQEGPATPTLTERETEILRYVAKGLTAKQ 177 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IA +L LS TV ++ + KL NR++ AI G Sbjct: 178 IAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|322434206|ref|YP_004216418.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321161933|gb|ADW67638.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 208 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT RE S L+ G +++IA L +S TV ++ + KL +R QA A++ Sbjct: 142 GQQLTARELSVLERIVAGRANKDIAADLFISEATVKTHVNNLLSKLGVADRTQAATIALQ 201 Query: 231 FGYI 234 G++ Sbjct: 202 RGFV 205 >gi|256380225|ref|YP_003103885.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924528|gb|ACU40039.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 32/78 (41%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 R A LT RET L + G ++ E+A L ++ TV ++ KL Sbjct: 135 FVRARPARAVRPPALTALTGRETEVLLMVARGLSNAEVARGLNVAEQTVKTHVSRVLTKL 194 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+ A G + Sbjct: 195 GLRDRAQAVIAAYESGLV 212 >gi|253575534|ref|ZP_04852871.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845181|gb|EES73192.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 200 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +++ + EA + EL LT RE L+LA G T+ EIA L Sbjct: 105 DESSDRLAEAIRRVKAGHREASPELVFGSLRRDNPLTAREQEILRLAAKGCTASEIAASL 164 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV Y+ KL+ +RI+A+ A G+I Sbjct: 165 HLSYGTVRNYISEILNKLEVKSRIEAVRLAEENGWI 200 >gi|227111773|ref|ZP_03825429.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 210 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 10/133 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 L + I V ++ A E +++A Sbjct: 71 LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDAIRNDDAFSEQV 130 Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 E+ + R S LTERE LQ G ++++IA L +S TV ++ + Sbjct: 131 REVLRHRIAIQDTPSPFTVLTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLR 190 Query: 215 KLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 191 KLNVRSRVAATVL 203 >gi|254389093|ref|ZP_05004323.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702810|gb|EDY48622.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 207 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + ++ A E ++ K + LT RET L+L Sbjct: 95 PADLIAAVRVVAAGEALLAPSVTRRLIADFAARHPAPRKGTGHRPKELTPRETEVLELIA 154 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE+L ++ TV ++G KL +R QA+ A G + Sbjct: 155 QGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESGLV 202 >gi|196232090|ref|ZP_03130945.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223812|gb|EDY18327.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + G + ++ A + + Q + L +KR+ LT RE Sbjct: 99 LSAGARSYVMKNMPRQEMLRAIRAVHDGQEYLPQEVQTALLQHEKRAP----LTPRELEV 154 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L G +++EI LG++ T ++ K+ ++R QA+ +A+R G I Sbjct: 155 IRLLARGCSNKEIGMALGIAEITAKIHVSHLLSKMGVLDRSQAVMEALRHGII 207 >gi|104780134|ref|YP_606632.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95109121|emb|CAK13818.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 905 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 41/81 (50%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +++ E A L+ RE + L+L G ++++I+E+L +S+HTV + Sbjct: 824 AELLARLPEAPANDLGATEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHIN 883 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL R QA+A+A G + Sbjct: 884 GKLGVERRTQAVARAKSLGLL 904 >gi|84498640|ref|ZP_00997397.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] gi|84381037|gb|EAP96923.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] Length = 215 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 35/103 (33%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + + ++ A + LT RE L A G ++ Sbjct: 113 FLLAAIRAVADGTQVVAAGATRAVFERFRERATATPGADYERLTPREREILLRAAQGLSN 172 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA LS TV ++ KL +R+Q + A G + Sbjct: 173 AEIAAAEFLSEATVKTHVSRILGKLALRDRVQLVVYAYEHGLL 215 >gi|330962290|gb|EGH62550.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 222 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 42/95 (44%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E +SA LT RE L L G+++ EI EKLG Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGASAPEALTPRERQVLGLVAGGFSNREIGEKLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|238059115|ref|ZP_04603824.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237880926|gb|EEP69754.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 220 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 37/97 (38%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 ++ A + ++ + + +LT RE + L G ++EEIA Sbjct: 116 GVRVVAAGDALLAPSVTRRLISEVAARRTPPPAPDLASLTNREVEIMDLVAQGLSNEEIA 175 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L +S T ++ KL +R Q + A G Sbjct: 176 GRLEISHATTKTHVSRILTKLGLRDRAQLVVWAYESG 212 >gi|229020573|ref|ZP_04177315.1| Two-component response regulator [Bacillus cereus AH1273] gi|229026791|ref|ZP_04183123.1| Two-component response regulator [Bacillus cereus AH1272] gi|228734514|gb|EEL85176.1| Two-component response regulator [Bacillus cereus AH1272] gi|228740737|gb|EEL90993.1| Two-component response regulator [Bacillus cereus AH1273] Length = 189 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L++RE L LA +G T+ EIA+ L LS TV Y+ KL+A NR Sbjct: 117 ELMFGLWQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNR 176 Query: 222 IQAIAKAIRFGYI 234 I+AI A G+I Sbjct: 177 IEAITIAEEKGWI 189 >gi|297201836|ref|ZP_06919233.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717312|gb|EDY61346.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 241 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 123 IRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 182 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 183 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 241 >gi|126347864|emb|CAJ89584.1| putative two component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 224 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + + LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ Sbjct: 152 RPALRLKGLTERETEVLTLVARGQSNTEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAV 211 Query: 226 AKAIRFGYI 234 A G + Sbjct: 212 VFAYESGLV 220 >gi|319653107|ref|ZP_08007209.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2] gi|317395028|gb|EFV75764.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2] Length = 199 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL LT+RE L+L DG + EIA++L + TV Y+ + KL+ NR Sbjct: 126 ELMDDVYGEENPLTDREKEVLELIADGKNTREIADQLSIKTGTVRNYISAILDKLEVTNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITQSKEKGW 197 >gi|313201365|ref|YP_004040023.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|312440681|gb|ADQ84787.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 213 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ ++ L++RE G T+ +IAE L LS TV +L Sbjct: 128 LEATVAQQMAIQQLSGEANPVDVLSDREFEVFIALAKGKTTNDIAETLSLSPRTVGTHLY 187 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL+A N + A+R G I Sbjct: 188 NIKQKLNANNSAEIALIAMRSGLI 211 >gi|229542357|ref|ZP_04431417.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229326777|gb|EEN92452.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 200 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL LTERE L+LA G T++ I E+L LS TV Y+ KL A NR Sbjct: 128 ELMFDAIREENPLTEREQQILRLAALGKTTKAITEELYLSSGTVRNYISDIIHKLGANNR 187 Query: 222 IQAIAKAIRFGYI 234 +A + A G+I Sbjct: 188 TEAASIAEEKGWI 200 >gi|117927574|ref|YP_872125.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648037|gb|ABK52139.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 199 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 34/88 (38%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 AH + LTERE L G ++ EI +L LS T+ Sbjct: 111 ALAHVVVDTRMRKMANGDPPPPLIDVPLTERERQVLDGMSRGMSNYEIGRELFLSEDTIK 170 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL A +R QA+A IR G + Sbjct: 171 THARRLFRKLGATDRAQAVALGIRAGLV 198 >gi|302559481|ref|ZP_07311823.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302477099|gb|EFL40192.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 221 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +++ L +A +LTERET L L G ++ EIA +L ++ T+ ++ VKL Sbjct: 141 LSEAPRLMPAAHAAYGDLTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKL 200 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA A + Sbjct: 201 GLRDRTQAAVFAYEARLV 218 >gi|302545491|ref|ZP_07297833.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463109|gb|EFL26202.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 237 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Query: 154 YQVITDFLELFKKRSS------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++I L L A L+ERE L L G + E A+ LGLS T Sbjct: 146 ARLIARVLRLPATPPPGTPSPAALSALSERERQVLALVARGLNNTEAAQALGLSPLTTKT 205 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL A +R Q + A G I Sbjct: 206 HVSRIMGKLGARDRAQLVITAYESGLI 232 >gi|206563825|ref|YP_002234588.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198039865|emb|CAR55840.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 244 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 59/232 (25%), Gaps = 26/232 (11%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYG 73 + L + A FA + + + EL Sbjct: 13 ADWPRALRACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRML 69 Query: 74 DDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D +G ++ + +E + R + +R G Sbjct: 70 DPLHPSRCAAGDRAVVTLASQLPDERR--DASAYWTRFLRRHDVADVVEIWLRDAGRTVG 127 Query: 131 YVIF---------------TSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARN 173 F + + ++ L + R Sbjct: 128 AFSLLRFGMGDANRTGNGTAGRFAPGEIDALARLQPVAEAALSPLLRARRGIHRIGCEER 187 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++EIA L L T+ +L KL NR + + Sbjct: 188 LTYREEQIARLVRDGCSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239 >gi|115358981|ref|YP_776119.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284269|gb|ABI89785.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 301 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 71/245 (28%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + + + L Sbjct: 60 TLANAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PNTYRGDYV 117 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116 D +PI+W +++ + L ++ + Sbjct: 118 RHNHHDIDPRTLDARVCNMPIVWDLQQLRREHRERDDGPCVTPAALDGFLQTMQDDGMCS 177 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 236 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296 Query: 230 RFGYI 234 + I Sbjct: 297 KLELI 301 >gi|294812452|ref|ZP_06771095.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441089|ref|ZP_08215823.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325051|gb|EFG06694.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 236 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + ++ A E ++ K + LT RET L+L Sbjct: 124 PADLIAAVRVVAAGEALLAPSVTRRLIADFAARHPAPRKGTGHRPKELTPRETEVLELIA 183 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE+L ++ TV ++G KL +R QA+ A G + Sbjct: 184 QGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESGLV 231 >gi|288802576|ref|ZP_06408015.1| transcriptional regulator [Prevotella melaninogenica D18] gi|288335104|gb|EFC73540.1| transcriptional regulator [Prevotella melaninogenica D18] Length = 214 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 36/89 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + C L LT+ ET L+ G T+ EIA+K S HTV Sbjct: 119 LQGQRFLCQHATNMILAPTALVDKEIVALTKTETEILKEIALGATTREIADKRFSSFHTV 178 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N + + KL N +AI A+R G + Sbjct: 179 NTHRKNIFRKLGVNNVHEAIRYAMRSGLV 207 >gi|295680795|ref|YP_003609369.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440690|gb|ADG19858.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 210 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 45/156 (28%), Gaps = 13/156 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + S L R+ + + + + + + Sbjct: 53 LDMTMPGISGVDLIRRVRSDRPGLPLLVLSIHNEAQVASRALRAGATGYVTKDSDPDVLL 112 Query: 152 ACYQVITDFLEL-------------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A + + D LT+RE LQL G + +IAE Sbjct: 113 AAIRKLADGGRFIDPKLVDAMVFEKHAGDVPPHEVLTDREFQVLQLIASGQSINDIAEAC 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS T++ + KL N + I AIR G I Sbjct: 173 SLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGLI 208 >gi|257069626|ref|YP_003155881.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560444|gb|ACU86291.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 222 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 33/70 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R LT+RET L G G ++ +I +L +S TV A++ KLD NR+Q Sbjct: 145 RQDRHPGLEQLTDRETEVLGAVGAGLSNAQIGMRLFMSEATVKAHVSKIFAKLDCTNRVQ 204 Query: 224 AIAKAIRFGY 233 A G Sbjct: 205 IAIIAHEAGL 214 >gi|169795883|ref|YP_001713676.1| LuxR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213157421|ref|YP_002319466.1| transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|215483371|ref|YP_002325582.1| response regulator [Acinetobacter baumannii AB307-0294] gi|301347889|ref|ZP_07228630.1| response regulator [Acinetobacter baumannii AB056] gi|301510141|ref|ZP_07235378.1| response regulator [Acinetobacter baumannii AB058] gi|301595140|ref|ZP_07240148.1| response regulator [Acinetobacter baumannii AB059] gi|332856103|ref|ZP_08436132.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6013150] gi|332868476|ref|ZP_08438188.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6013113] gi|169148810|emb|CAM86679.1| putative transcriptional regulator (LuxR family) [Acinetobacter baumannii AYE] gi|213056581|gb|ACJ41483.1| transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|213987495|gb|ACJ57794.1| response regulator [Acinetobacter baumannii AB307-0294] gi|332727165|gb|EGJ58622.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6013150] gi|332733363|gb|EGJ64550.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6013113] Length = 239 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 10/211 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + I ++A A Y +S + + D + + I + D Sbjct: 35 ENIIADIAILLRADFAASYIWDSTHNL----SKDGVIWKIDPKAMEDY-ECIWQFDDPIT 89 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + P + + ++ + GI G + Sbjct: 90 AQLHKLQKPTFVNEVMPLSDLK-KTGYYNEFLKTYGLYHGINIYFVRNGVDIGDLRIWRA 148 Query: 138 FLMLANEVIIEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + T L L S LT RE + L G + +E+A Sbjct: 149 QDAEMFGEREKRILTLLEPYFTQALPLD---LSTQYGLTPREQEVVHLVSKGLSDKEVAS 205 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LG+ T+ +L ++ K+ NR + Sbjct: 206 LLGIGFTTLRTHLNNSMRKIGGNNRTEMALL 236 >gi|86741939|ref|YP_482339.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86568801|gb|ABD12610.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 213 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D + + +L+ RE LQ +G T+ +I ++ LS TV Y+ S KL Sbjct: 137 DRMRQGPREDPTLASLSAREREILQHIAEGLTNRQIGTRIHLSEKTVKNYVSSILEKLGM 196 Query: 219 VNRIQAIAKAIR 230 +R QA A++ Sbjct: 197 TSRTQAAVYALK 208 >gi|68536744|ref|YP_251449.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] gi|68264343|emb|CAI37831.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] Length = 227 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 42/119 (35%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 +G V + + + ++ LT Sbjct: 99 SGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRREPVELDLPDPLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL G +++EIA+KL +S+ TV ++G K + +R+ + A + + Sbjct: 159 PRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHVVLFAFKHHLV 217 >gi|332296491|ref|YP_004438414.1| two component transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] gi|332179594|gb|AEE15283.1| two component transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] Length = 231 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A++ L+ RE L+L GY+++EIA+ L +S TV Y T KLD R + AI Sbjct: 150 ASKTLSSREDQVLRLLALGYSAKEIAQTLQISPKTVQTYRQRITTKLDLRRRSDIVRYAI 209 Query: 230 RFGYI 234 G + Sbjct: 210 SKGLL 214 >gi|325676336|ref|ZP_08156015.1| response regulator [Rhodococcus equi ATCC 33707] gi|325552897|gb|EGD22580.1| response regulator [Rhodococcus equi ATCC 33707] Length = 231 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 65/213 (30%), Gaps = 11/213 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS- 82 + + I + Q+ + Y + H Sbjct: 28 LSRWSAELGYVAAAITYRRSGDQGQR-VLANGGYAVP-VAQYLAREFVDDTRIFDHIRVA 85 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLML 141 P+ W+ + + + + + G + + L + V+ S + Sbjct: 86 SGRPVCWEDVPDFELTSAVE----DVLRPSGFREGSSVALGLERGQVTSVLHVSFTRSQV 141 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + V Q + ++ S L+ RE L L G ++ EIA +L +S Sbjct: 142 DSTVRAGIEALARQCRRIVADQSERESF---RLSGREHQILVLVAQGASNAEIAAELLIS 198 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + K +R++ +A G + Sbjct: 199 RRTVATHLENIFAKTGTRSRVRVAVRATELGIL 231 >gi|288959032|ref|YP_003449373.1| two-component response regulator [Azospirillum sp. B510] gi|288911340|dbj|BAI72829.1| two-component response regulator [Azospirillum sp. B510] Length = 228 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L++RE L+ G +++ IA L ++ TV + + K++A NR QA Sbjct: 157 MPTSGELSKREVQILRCLLAGQSNKAIARNLHITESTVKMHFKNVMRKINAQNRTQAAVW 216 Query: 228 AIRFGY 233 AI+ G Sbjct: 217 AIQNGL 222 >gi|308067901|ref|YP_003869506.1| nitrate/nitrite response regulator protein narL [Paenibacillus polymyxa E681] gi|305857180|gb|ADM68968.1| Nitrate/nitrite response regulator protein narL [Paenibacillus polymyxa E681] Length = 212 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + + +LT +E L G G + EIA +L +S TV ++ KL +R Sbjct: 133 LREDAGNLSDDLTPKEKEVLVELGQGACNREIASRLFISEFTVKKHVSQILAKLRLADRT 192 Query: 223 QAIAKAIRFGY 233 QA A G Sbjct: 193 QAALYANAIGL 203 >gi|304438628|ref|ZP_07398567.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368466|gb|EFM22152.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 233 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L G ++++I + LGLS TV +L S KL +R QA+ Sbjct: 165 SRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYV 224 Query: 229 IRFGYI 234 ++ + Sbjct: 225 LKNKIV 230 >gi|260467229|ref|ZP_05813405.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029004|gb|EEW30304.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 210 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 7/199 (3%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYGD--DFLFHFNSGLLPIIWQSIQEETVIE 99 D ++L+ + D + + D + + I+ + V Sbjct: 11 ADGAASRRLVVLVALADAARAEHLAASLAASDDLLPVVAGGGRADVAIV-DERSGDAVPT 69 Query: 100 SSGQLSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155 S ++ + G AG F V + ++ + H + Sbjct: 70 SMPRVLLSGRAGGERPAGEVFAVMPTDADDLLIAAAARLAAAGYRVSGDGRGGRHEDFHA 129 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ E + L+ RE L L +G ++ IA +L +SVHT ++ + +K Sbjct: 130 GESEPFEDEADEQATRPALSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIK 189 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L A NR AIA A+R G + Sbjct: 190 LGAANRTDAIAIAMRQGLV 208 >gi|242372051|ref|ZP_04817625.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242350163|gb|EES41764.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 218 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEY 209 Query: 228 AIRFGYI 234 A++ + Sbjct: 210 ALKKKLL 216 >gi|238927983|ref|ZP_04659743.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238883943|gb|EEQ47581.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 223 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L G ++++I + LGLS TV +L S KL +R QA+ Sbjct: 155 SRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYV 214 Query: 229 IRFGYI 234 ++ + Sbjct: 215 LKNKIV 220 >gi|170699428|ref|ZP_02890473.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170135684|gb|EDT03967.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 301 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 71/245 (28%), Gaps = 20/245 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 T + S E + + + + FA + + + + L Sbjct: 60 TLANAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PNTYRGDYV 117 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116 D +PI+W +++ + L ++ + Sbjct: 118 RHNHHDIDPRTLDARVCNMPIVWDLQQLRREHRERDDGPCVTPAALDGFLQTMQEDGMCS 177 Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169 GI + + + + ++ FT+ E + G + R Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 236 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT E L +G + +EI +L S H V+ +L + NRIQ Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296 Query: 230 RFGYI 234 + I Sbjct: 297 KLELI 301 >gi|242239902|ref|YP_002988083.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703] gi|242131959|gb|ACS86261.1| two component transcriptional regulator, LuxR family [Dickeya dadantii Ech703] Length = 211 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 11/159 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + ES L RL F I + G + ++ Sbjct: 50 VDVAVMDIAMPDESGLSLLARLRQKRPTFRAIILSIYDTAAFVQSALDAGACGYLTKRCG 109 Query: 141 LAN--EVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + H + L ++R A LT RE L +G + + IA Sbjct: 110 PEELVQAVRAVHAGGSYLCADAMRALRHSRQRPKALEALTPREREIFDLLVNGLSVKTIA 169 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+L LS TV+ + + KL ++ + A++ + Sbjct: 170 EQLDLSHKTVHVHRANVLDKLHCATTVELVHFALQHQLL 208 >gi|271965229|ref|YP_003339425.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508404|gb|ACZ86682.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 245 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 14/145 (9%) Query: 104 LSVRLEGGLLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161 L +R + P L + S L + ++ +++ Sbjct: 92 LLLRAASDGALVEAVTLPADGFLLENDLTRDSLKSALADLDSGLMPMPGPLARKLLARVR 151 Query: 162 ELFKKRSS------------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ A+ LT RE L L +G ++++IA +LG+S H ++ Sbjct: 152 RAESGEAARPPERPCPEADRASSPLTTRERETLSLMAEGLSNKQIARRLGISEHGAKRHV 211 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ NR A A A+ G + Sbjct: 212 ANILAKLNCSNRTLATAVALNRGLL 236 >gi|107103588|ref|ZP_01367506.1| hypothetical protein PaerPA_01004658 [Pseudomonas aeruginosa PACS2] gi|218889645|ref|YP_002438509.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218769868|emb|CAW25629.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 222 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 54/212 (25%), Gaps = 11/212 (5%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79 + + A Y I+ + +L D H Sbjct: 14 MQAFTQVVPASLCVFYRID-----EDCRAHDFQLLRMPAGMHRDYLRH-YRDYDPLQPRH 67 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 + P++ L + + + Sbjct: 68 CLASASPVVPLRQGIARQPAKDSALYQGFLRRHGICDVVEVLAHAQQRPVAALSLLRDAR 127 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIA 195 + A + + + + LT RE L DG +++ +A Sbjct: 128 LGAFSDQELRQLRALHGLMELAAQACATPAASAERLQGLTPREREIALLLRDGVSNKCLA 187 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LGL + TV +L + K A +R + + + Sbjct: 188 QCLGLGLPTVKTHLLNLFRKTGARSRTELVKR 219 >gi|283853336|ref|ZP_06370584.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. FW1012B] gi|283571260|gb|EFC19272.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. FW1012B] Length = 225 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + A LT RE L+L +G ++ IA L +S TV + + KL Sbjct: 144 AVRRSRPADPAYDTLTRREQQILRLLAEGRSAGAIAADLYISRKTVENHRANIFGKLGLT 203 Query: 220 NRIQAIAKAIRFGYI 234 + + + A+R G I Sbjct: 204 SMAELVHYAVRLGLI 218 >gi|196228529|ref|ZP_03127396.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196227932|gb|EDY22435.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 8/165 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + P + + + + L + G + Sbjct: 43 MLAAYRQHRP-DVVLLDWRLPGPNGAEATALLREEHPGARVLMLSALDGDEHIHLAVRAG 101 Query: 137 EFL----MLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 II+A A + + LE + ++ RE L A G Sbjct: 102 AAGYVLKSAERGEIIQAIRAVHGGKSYFSPGLEALLHDRARKVEISPREREVLVRAAAGE 161 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EI + LG+S TV ++ KLDA +R A+ AI+ G I Sbjct: 162 RNKEIGDHLGISEATVKVFMARIFQKLDARDRAHAVVIAIKRGII 206 >gi|21241668|ref|NP_641250.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107032|gb|AAM35786.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 235 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + A + H V ++ N+ + Sbjct: 86 AAGDGHEAAWLMPPRPSDIREARVPIHALGTTHGMLCVAWSEGRPAPGNDDVQALQAFAL 145 Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E ++R L++RE L L G T+ +A +LG+S TV Sbjct: 146 LLPAMVAEPAKPVATRRRKPLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL+ +R QA A++ G Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|148255164|ref|YP_001239749.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146407337|gb|ABQ35843.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. BTAi1] Length = 140 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 39/70 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R+ LT RE L L +G +++EIA LG+SVHT ++GS KLDA R A Sbjct: 69 DGRAIDGFQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDA 128 Query: 225 IAKAIRFGYI 234 +A A R G I Sbjct: 129 VAHAARRGII 138 >gi|158338175|ref|YP_001519352.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308416|gb|ABW30033.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 224 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE L+L G ++ EI+E L ++ TV ++ S ++ +R Q A Sbjct: 155 EGITPREQDVLKLVATGASNREISETLHITEKTVKNHVSSILSRVGVQSRTQLAIWANSA 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|148239259|ref|YP_001224646.1| two component system response regulator [Synechococcus sp. WH 7803] gi|147847798|emb|CAK23349.1| Two component system response regulator [Synechococcus sp. WH 7803] Length = 235 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 32/70 (45%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE G + IA LGLSV TV +++G+A KL A +R Q Sbjct: 162 PDLPPLVEELTPRELEVAAGVARGLKNNAIATLLGLSVETVKSHVGNAMDKLGARDRTQM 221 Query: 225 IAKAIRFGYI 234 A+ +G I Sbjct: 222 AVTALLYGLI 231 >gi|114798675|ref|YP_760164.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114738849|gb|ABI76974.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 137 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 8/136 (5%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVIT 158 SV AGI+ V G +I +A + V+ Sbjct: 4 SVAFMMEHGIAAGISVMVPRLNGDYGSLICIYDRDNAHLASEVAARRAPDLLFLASSVVC 63 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L + A L+ ++ +CL+ G T +EIAE + SV+TV ++ +A L A Sbjct: 64 ALEHLAEGARPA--ELSPQQVTCLRWVKAGKTDQEIAEIILCSVNTVRYHIKTALKDLGA 121 Query: 219 VNRIQAIAKAIRFGYI 234 NR A+ AI I Sbjct: 122 SNRTHAVVLAIEHRLI 137 >gi|29831080|ref|NP_825714.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608194|dbj|BAC72249.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 36/78 (46%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + L +A LTERET L L G ++ EIA +L ++ T+ ++ VKL Sbjct: 144 LAETPRLSASVHAAYGELTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKL 203 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA A + Sbjct: 204 GLRDRTQAAVFAYEARLV 221 >gi|51893491|ref|YP_076182.1| hypothetical protein STH2353 [Symbiobacterium thermophilum IAM 14863] gi|51857180|dbj|BAD41338.1| conserved domain protein [Symbiobacterium thermophilum IAM 14863] Length = 611 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 44/170 (25%), Gaps = 8/170 (4%) Query: 58 DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 + + T D + + + + + G Sbjct: 444 PAAALERVKAGKGTQFDPLVVAALESHVWSAMSFLPAASGEAWQADATDPAR---GQPRG 500 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 A + +++ V + + LT+R Sbjct: 501 GAGSAPPPPVVDPQPPEAGAGPEVSSPV-----PPAERARQETAASVTSPHPDLSVLTQR 555 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E L G ++ EIA +L LS TV ++ KL +R +A Sbjct: 556 EREVLAHVAQGLSNREIAARLFLSEATVKTHVSRILQKLGLPDRTKAAVF 605 >gi|326796352|ref|YP_004314172.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326547116|gb|ADZ92336.1| two component transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 211 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT ++ L +G +++IA +L +S T+ A++ + KL NR QA+ A Sbjct: 148 ELTPQQFKVLCYLHEGMLNKQIAYELNISEATIKAHITAIFRKLGVNNRTQAVLIASDLE 207 Query: 233 Y 233 Sbjct: 208 L 208 >gi|299533172|ref|ZP_07046556.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298718702|gb|EFI59675.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 255 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LTERE L+L G S E+A L +S TV+ ++ + K+ R QA+ AI Sbjct: 193 ESLTEREVEILKLIAQGKNSLEVASYLQISPLTVSTHIKNIYGKMQVRTRAQAVRCAILI 252 Query: 232 GYI 234 G I Sbjct: 253 GII 255 >gi|258620778|ref|ZP_05715813.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573] gi|258586976|gb|EEW11690.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573] Length = 207 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 80 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 139 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 GSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199 Query: 227 KAIRF 231 + Sbjct: 200 LYLER 204 >gi|239943689|ref|ZP_04695626.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990140|ref|ZP_04710804.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447153|ref|ZP_06586543.1| two-component system DNA-binding response regulator [Streptomyces roseosporus NRRL 15998] gi|291350100|gb|EFE77004.1| two-component system DNA-binding response regulator [Streptomyces roseosporus NRRL 15998] Length = 231 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 113 IRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|271965920|ref|YP_003340116.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509095|gb|ACZ87373.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 35/106 (33%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + ++ + LT RE L G Sbjct: 109 EPADLLQGVRVAARGDALLSPAITRRLIAEYVARRPASAPEGLDVLTNREREVTALVARG 168 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++EIA + +S T ++ A KL A +R Q + A G + Sbjct: 169 LSNDEIAVHMVISPTTAKTHVSRAMTKLRARDRAQLVVFAYESGLV 214 >gi|229494528|ref|ZP_04388291.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229318890|gb|EEN84748.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 222 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R+ LT+RET L+L G ++++IA +L LS TV ++ + KL NR Sbjct: 150 APADDRAPELPRLTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANR 209 Query: 222 IQAIAKAIRFGY 233 ++ AI G Sbjct: 210 VELTRYAIEQGL 221 >gi|256389895|ref|YP_003111459.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356121|gb|ACU69618.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 234 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 11/113 (9%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V + + + ++ + + + D LT RE Sbjct: 128 VHMVRAGDAMLAPAITRRLVERFAVPTVNPRTEALHKDLA-----------TLTPREREV 176 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G G ++ E+A + LS TV ++ KL+ +R QA+ A G I Sbjct: 177 LGLLGRGLSNAELAARFHLSEATVKTHVARILAKLNLRDRAQAVVVAYETGLI 229 >gi|227875745|ref|ZP_03993873.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269976705|ref|ZP_06183681.1| two-component response regulator [Mobiluncus mulieris 28-1] gi|306819021|ref|ZP_07452738.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] gi|227843687|gb|EEJ53868.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269935070|gb|EEZ91628.1| two-component response regulator [Mobiluncus mulieris 28-1] gi|304648214|gb|EFM45522.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] Length = 220 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE ++L + +++IA +L +SV TV ++ S KL NR +AKA R G Sbjct: 159 LSERELQVVRLVAEALENKQIASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGL 218 Query: 234 I 234 + Sbjct: 219 L 219 >gi|261346511|ref|ZP_05974155.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM 4541] gi|282565504|gb|EFB71039.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM 4541] Length = 248 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 67/219 (30%), Gaps = 18/219 (8%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L + + I N +Y + + ++ + D+ + D F Sbjct: 24 LLSWLSSFIAFDNAIIYAFEKGGA----PRFLSKVETRNSDNINRLYQRGAYLMDPFYQE 79 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 G + + + + + + + F +E Sbjct: 80 LLKGGSSKVLTLKELAPKGFHHTDYYLNFYRKTGWCDEAGLLLEISRDRQLAIFFGNEEK 139 Query: 140 MLANEVIIEAHG-ACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLA 185 L +E A + +I L K + + LT RE ++L Sbjct: 140 PLLSEESKRAPLKEAFDIIRSIARLHKDVVPNSVSSDYRHTDLQTCFGLTPRECEVVELI 199 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +G S +IA+ L +S+ TV + + KL ++++ Sbjct: 200 LEGKGSPQIADTLFISLGTVKNHRKNIYQKLGIGSQVEL 238 >gi|134094678|ref|YP_001099753.1| putative two-component response regulator protein [Herminiimonas arsenicoxydans] gi|133738581|emb|CAL61626.1| Two-component response regulator, LuxR family [Herminiimonas arsenicoxydans] Length = 315 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 9/118 (7%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + V M + I+ + L A Sbjct: 190 DDGSNMVLVASIAEPAGDSLLVRNMGSAGM---DEIMLLLELSSNRMLPTGRL------A 240 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RET L G T+ +I + L LS TV+ +L KL R A+A A Sbjct: 241 SAALTPRETEVLSWLAKGKTNRDIGDILQLSPRTVSKHLEHIFEKLGVETRSAAVAMA 298 >gi|315181638|gb|ADT88551.1| response regulator [Vibrio furnissii NCTC 11218] Length = 204 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++E V+ +L + Sbjct: 75 VILTVSDSAADIEAIVRAGADGYLLKDTEPDQLVELLKEAVHGNKAYSDVVAAYLRDRQD 134 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT+RE L GY +++IA++L +S TV ++ S KL +R A Sbjct: 135 QQDVFDLLTDREAQILGEVAKGYRNKQIADRLFISESTVKVHMKSLLKKLRVPSRTAATV 194 Query: 227 KAIRF 231 + Sbjct: 195 LFLER 199 >gi|284009118|emb|CBA76121.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 205 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 56/197 (28%), Gaps = 11/197 (5%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + + N + ++ D + + + W E + Sbjct: 6 NPMDVIIINNHTEWFELYIKGSYQLIDPVIINAMERVDDFHWDEKIM-IYSEMKLPKIFK 64 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---------NEVIIEAHGACYQVIT 158 G F + + + ++++ Sbjct: 65 HSKKYNINKGHTFVLHDYLTNLAVLSIFETGSDDNNKYTINSNKEKFQQLLIKTHQKLLS 124 Query: 159 DFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + E+ K R+ L+ RE L G T ++IA+ LG+ T+ ++G+ KL Sbjct: 125 LYDEIEKGRNQYKPSGLSSRENEILYWVSIGRTYQDIAKMLGIKQGTIKFHMGNVVKKLG 184 Query: 218 AVNRIQAIAKAIRFGYI 234 + AI A I Sbjct: 185 VSSTKHAIKLATELKMI 201 >gi|258620786|ref|ZP_05715821.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM573] gi|258586984|gb|EEW11698.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM573] Length = 208 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 15/169 (8%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + P+ I E+ L RL F I + G Sbjct: 40 FHALT-HSPVDVAIIDISMPDENGLSLLERLRQHNPNFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + S+ + V C + + ++ +LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLVDLTKREVEVFDLL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++IA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 157 VQGQDVKDIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFALQHHLL 205 >gi|239833383|ref|ZP_04681711.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821446|gb|EEQ93015.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 5/100 (5%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194 + +V+I A ++ + + ++A N L+ RET L+ G G + EI Sbjct: 131 PIDFDVLILTIRARLNLVARVKAISNQPAAAEPNGEFIHLSRRETEVLKEIGTGQRNGEI 190 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A KLGLS HTV+ Y+ + KL +R +A +AIR G + Sbjct: 191 ARKLGLSEHTVSDYVKAIYQKLSVSSRAEATREAIRRGLV 230 >gi|116626889|ref|YP_829045.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230051|gb|ABJ88760.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 215 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 40/76 (52%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L+ ++ S +LT RE QL +G +++EIA +L LS+HTV + KLD Sbjct: 139 ARLQDAREVSDRFESLTGRERQVYQLLAEGNSNKEIANRLNLSLHTVETHRWHIMEKLDL 198 Query: 219 VNRIQAIAKAIRFGYI 234 + + + A+R G + Sbjct: 199 HSTAELVLSAVRRGLV 214 >gi|311899330|dbj|BAJ31738.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 223 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + + LT RE + L G ++++IAE+L ++ T ++ Sbjct: 135 ALIGRFLAQPDPVRRAALPRLDVLTAREQQVVALVAAGLSNDDIAERLFVTPLTAKTHVN 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 A KL A +R Q + A G + Sbjct: 195 RAMTKLGARDRAQLVVIAYETGLV 218 >gi|284043929|ref|YP_003394269.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948150|gb|ADB50894.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 221 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 36/78 (46%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + + LTERE L+L G T+ EIA L ++ TV ++GS KL Sbjct: 137 YRRLVAPAAREGTRLELLTEREHDVLRLMARGATNAEIAATLFVAEATVKTHVGSIFSKL 196 Query: 217 DAVNRIQAIAKAIRFGYI 234 D +R AI A G I Sbjct: 197 DVRDRAAAIVYAYDHGVI 214 >gi|240171514|ref|ZP_04750173.1| two-component transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 218 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 33/84 (39%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + L + LTE+E + L +G T+ +IA ++ L+ TV Y Sbjct: 125 LDNRAAAALMAKLRGGAEHHDPLSGLTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNY 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRFG 232 + KL R QA A R G Sbjct: 185 VSRLLAKLGMERRTQAAVFASRLG 208 >gi|226363981|ref|YP_002781763.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242470|dbj|BAH52818.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 322 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 67/243 (27%), Gaps = 30/243 (12%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +SS + + + L ++ P + L +P+ Sbjct: 79 AASSAELMQRACERVAELCSVDKVVLSRLDGDRIIP-----VAALSTAPGTMPSLPSEFG 133 Query: 70 ETYGDDFLFHFNS------GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 G + +P + + + + LL + R Sbjct: 134 LPDGSPEADALETNTVTVGSHVPAELRELLGANGFTTVPVVVDGTAAALLHVGAVLDGSR 193 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------------- 169 + F + E E A + S Sbjct: 194 RHALGVFAEVLGGHFERVGLESRRERQNALLRESARRWTGDDAPPSHGALDLAPSQADRD 253 Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE ++L G ++ IA +L ++V TV +++ KL A NR + Sbjct: 254 AAEQRLLEPLTEREADVVRLILTGASNSAIAAELVITVDTVKSHVKRILRKLGATNRAEL 313 Query: 225 IAK 227 IAK Sbjct: 314 IAK 316 >gi|281421139|ref|ZP_06252138.1| transcriptional regulator [Prevotella copri DSM 18205] gi|281404674|gb|EFB35354.1| transcriptional regulator [Prevotella copri DSM 18205] Length = 212 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 41/85 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + Q + + L K+ NLT+ ET L+ G T++EIAEK S HTVN + Sbjct: 121 NRFVCQRMMEVLLAPKQEEQEKINLTKTETEILKDIALGMTTKEIAEKRFSSFHTVNTHR 180 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL N +A A+R G + Sbjct: 181 KNIFRKLGVNNVHEATKYALRAGLV 205 >gi|282861721|ref|ZP_06270785.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563537|gb|EFB69075.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 229 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LT RET L+L G +++EIA +L ++ TV ++ K D +R Sbjct: 150 AFRSGPARRLKGLTPRETEVLELVARGLSNQEIAGRLVVAEQTVKTHVSRILAKADLRDR 209 Query: 222 IQAIAKAIRFGYI 234 QA+ A G + Sbjct: 210 AQAVIFAYESGLV 222 >gi|160893007|ref|ZP_02073795.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50] gi|156865090|gb|EDO58521.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50] Length = 207 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L+ + + NLTE+E ++L DG ++EIAE+L LS TV YL + +KLD Sbjct: 134 LLQTDDRFDYLSYNLTEKEFELIRLVADGLNNKEIAEQLFLSEGTVRNYLSNILMKLDLR 193 Query: 220 NRIQ 223 +R Q Sbjct: 194 DRTQ 197 >gi|84495477|ref|ZP_00994596.1| putative two-component response regulator [Janibacter sp. HTCC2649] gi|84384970|gb|EAQ00850.1| putative two-component response regulator [Janibacter sp. HTCC2649] Length = 234 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 43/113 (38%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +R + + ++A V A A + LT+RE Sbjct: 111 IRSVAGGHALLAPEVTTRVIAAMVGTGAGAAAATATPGTGSTSPGSADQISRLTDRELEV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G G ++ EIA L L T+ ++ + KL +R+QA+ A G I Sbjct: 171 LILMGRGRSNAEIAADLFLGEATIKTHVSNCLAKLHLRDRVQAVVFAYEVGLI 223 >gi|260459364|ref|ZP_05807619.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259034918|gb|EEW36174.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 219 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTE 176 P+ + K G + F ++ +E ++ A + L L + + L+ Sbjct: 103 VPMTVKAMKAGAIEFLTK--PFDDEELLSAIKLALERSKSALALDSEFQALKDRHTSLSR 160 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + L G +++I +LG+S TV A+ G A K+ A + Q + A R G Sbjct: 161 REQEVMTLVVSGLLNKQIGFELGISEITVKAHRGQAMRKMQARSLAQLVHMAARLGI 217 >gi|224825495|ref|ZP_03698600.1| transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224602416|gb|EEG08594.1| transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 231 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 54/212 (25%), Gaps = 13/212 (6%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 + + + + A Y ++ L + LH D Sbjct: 15 IDSLTALVPVSSCAFYRVDEQL-----RPRDWLLHKMAGRVHRSYVSQ-YQQHDPLHPMR 68 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT----- 135 ++ + + G + VR Sbjct: 69 FGSGRRVVVPMDEVLPLRLRPGSPYSAFMARNAMCDVVELFVRSKGKVVAGFSLIRGEEL 128 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEE 193 F E++ H L + + LT RE L DG ++ Sbjct: 129 GHFSAGELEMLEYLHKLVELAAESGLPQQGEPAGFTQFERLTPREQQVALLVRDGACNKT 188 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 IA LGL + TV +L K VNR + + Sbjct: 189 IARDLGLGLPTVKTHLQHLFRKFQVVNRTELV 220 >gi|221209676|ref|ZP_03582657.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] gi|221170364|gb|EEE02830.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] Length = 244 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72 + LH + A FA + + EL Sbjct: 12 AADWQRALHACVDAFDA--FASPSAIVFYRLDASGEPADFELFGMPESMHRTYVA-RYRM 68 Query: 73 GDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + ++ + Q + R + +R G Sbjct: 69 LDPLHPSRCAADARTVVTLASQLPDECRDASAYWTRFLRRHGVADVVEIWLRDDGRTVGA 128 Query: 132 VIFTSEFLMLAN---------------EVIIEAHGACYQVITDFLELFKK--RSSAARNL 174 A + + ++ L + R L Sbjct: 129 FSLLRFDTRGAARGGDGASTRFAPGEIDALARLQPLAEAALSPLLRTRRGIHRIECEARL 188 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE +L DG +++EIA L L T+ +L KL NR + + Sbjct: 189 TYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239 >gi|21242903|ref|NP_642485.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108399|gb|AAM37021.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 213 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L L G ++++I L +S TV A++ + KL +R A+ A+R Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRR 206 Query: 232 GYI 234 G + Sbjct: 207 GIL 209 >gi|27376447|ref|NP_767976.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349587|dbj|BAC46601.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ + A LT RE L G++ EIA LGLS TV + Sbjct: 138 IARFIVRRTQNSAEPPPGPALNTARLTPREIDILWGIAKGFSYAEIASHLGLSRQTVPGH 197 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL+ R +A+ +A++ G I Sbjct: 198 IKNIYRKLEVHTRSEAVFEAVQQGLI 223 >gi|88859107|ref|ZP_01133748.1| putative csg operon transcription regulator (LuxR family) protein [Pseudoalteromonas tunicata D2] gi|88819333|gb|EAR29147.1| putative csg operon transcription regulator (LuxR family) protein [Pseudoalteromonas tunicata D2] Length = 207 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + ++L G ++++AEKL +S HTV +L SA K +A NRI+ A + Sbjct: 136 EKLTNRERTIIRLVSQGAKNKDVAEKLHISDHTVKTHLYSAFRKTNARNRIELANWAQK 194 >gi|124266085|ref|YP_001020089.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124258860|gb|ABM93854.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 896 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 7/172 (4%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + + + H +S+++ + G+ G A V Sbjct: 731 RVYRDIRLYVFEALMLHDKGSPNGAH-RSLRKALQLARPGRYVRCFLDE-----GRAI-V 783 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + + + + ++ + + L + R L+ERE L Sbjct: 784 SMLREEYQHFLQSAADGQAPADPDRDFIELLLAASGTDLGQPRGRHHLTDPLSEREKEML 843 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q +G ++EIA +L +S +TV +L + KL R+QAI A + Sbjct: 844 QFLANGVANKEIASRLFVSENTVKFHLKNIYSKLGVSGRVQAINAARTLRLV 895 >gi|330998013|ref|ZP_08321844.1| hemerythrin HHE cation binding domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569314|gb|EGG51094.1| hemerythrin HHE cation binding domain protein [Paraprevotella xylaniphila YIT 11841] Length = 326 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 SA L++RE + G +++EIAE+L +SV+TV + + + KL + Sbjct: 250 DGEDSANDALSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGL 309 Query: 225 IAKAIRFGYI 234 AI G I Sbjct: 310 TIYAIVNGLI 319 >gi|331699960|ref|YP_004336199.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954649|gb|AEA28346.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 223 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 152 ACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + + L + A + LT RE+ L L G ++ IA +L +S TV ++L Sbjct: 138 LAGRAVDTAARLQSDEFWPGARQGLTHRESEVLSLMVTGLSNRGIATRLVVSDETVKSHL 197 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 S KL +R A+A A+R G Sbjct: 198 RSIYRKLGVGDRTAAVATALREGI 221 >gi|298242939|ref|ZP_06966746.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555993|gb|EFH89857.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 928 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE L L G ++++IAE L +++ TV ++ KL NR+QA+A+A Sbjct: 859 PLVEPLSERELEVLHLIARGDSNQKIAEMLMITLDTVKRHVTHIFEKLGVSNRVQAVARA 918 Query: 229 IRFGYI 234 ++ Sbjct: 919 RALDWL 924 >gi|169825087|ref|YP_001692698.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|167831892|dbj|BAG08808.1| two-component response regulator [Finegoldia magna ATCC 29328] Length = 208 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + LT RE L+L G +++IAE+LG+S++TV ++ K + +R Q + Sbjct: 138 MAKSTELTPREIEVLRLLTTGAGNDQIAEELGISLNTVKTHIKHMLDKTEFTSRTQLAIQ 197 Query: 228 AIRFGYI 234 A G++ Sbjct: 198 ARITGFV 204 >gi|290955466|ref|YP_003486648.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260644992|emb|CBG68078.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 342 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + H V+ + + + + L+ RE L A G T++ IA+ L LS TV+ Sbjct: 238 VRRHTLGSAVVRRAVLVHETPAPLPYGLSPRELEVLTRAATGMTNQAIAQALFLSPRTVH 297 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ K A +R +A A A+R G + Sbjct: 298 THVEHLLRKTGAASRAEATALAVRDGLL 325 >gi|317048150|ref|YP_004115798.1| LuxR family two component transcriptional regulator [Pantoea sp. At-9b] gi|316949767|gb|ADU69242.1| two component transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 206 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 5/119 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK---KRSSAARNLT 175 PV + K G F ++ + E +++A Q+ + L + +S +LT Sbjct: 85 TIPVTVRAMKTGACEFLTK--PVDPEQLLQAVAEALQMAEENLASSQEKYDITSRHLSLT 142 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE+ + LA G +++IA ++G+S T + K++ + + A R + Sbjct: 143 PRESEVMLLAISGLLNKQIAAEMGISEITAKVHKRRVMEKMNVRSLSDLVRAAERLNIL 201 >gi|229181601|ref|ZP_04308926.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601797|gb|EEK59293.1| Two-component response regulator [Bacillus cereus 172560W] Length = 189 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE + LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVMLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|329937507|ref|ZP_08287065.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329303383|gb|EGG47270.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 219 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Query: 142 ANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 A + A +V+ FL + + R L+ RE L L G ++ EIA +L Sbjct: 120 ARGEALLAPTVLTRVLDRFLRTLPDPEPPPSLRELSGREREVLTLIGRALSNAEIAARLC 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV ++ + KL +R+QA+ A G + Sbjct: 180 LSEATVKNHVTAVLRKLGLRDRVQAVVTAYDHGLV 214 >gi|325963470|ref|YP_004241376.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323469557|gb|ADX73242.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 207 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 70/224 (31%), Gaps = 29/224 (12%) Query: 14 LQELSPRLHLIQNRIKARNFALY-----TINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 L + +++ ++ F + + P Q I L D I Sbjct: 4 LDDHELVRQGLRDLLEGEGFVVVGESGSAAEATRRIPALQPDIAILDGRLPDGTGIEVCR 63 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L H Q+I+ + +SG + ++ L Sbjct: 64 DVRSFDPRL-HCLILTSYDDEQAIRGAVLAGASGYVLKQIRSDDLL-------------- 108 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 A E + E G ++++ + L+ +E L L G G Sbjct: 109 ------AGIRRAAAGESLFEP-GVKERIVSGLSKTPTD--PRMEGLSAQEKKVLTLIGQG 159 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+ +I E+L L+ TV Y+ S KL R QA R G Sbjct: 160 LTNRQIGEELFLAEKTVKNYVSSILAKLGFERRTQAAVYVTRSG 203 >gi|229489617|ref|ZP_04383480.1| response regulator [Rhodococcus erythropolis SK121] gi|229323714|gb|EEN89472.1| response regulator [Rhodococcus erythropolis SK121] Length = 219 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 3/121 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + G + + A + Sbjct: 99 RGGARGYVTKTISGSELAEGVRRVAGGDAVFGPRL---AGFVLDSFTGRSNAPEPQLDPE 155 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE L +SV TV + + K NR A R Sbjct: 156 LDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHR 215 Query: 231 F 231 Sbjct: 216 R 216 >gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 231 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +++ + + +LT RE S L L +G ++EIA +L SV V Y+ K Sbjct: 152 LLSPRNAITQTPPPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSK 211 Query: 216 LDAVNRIQAIAKAIRFGY 233 +R + + A+ G Sbjct: 212 TGTNSRTELVRFALEHGL 229 >gi|254229254|ref|ZP_04922672.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262393135|ref|YP_003284989.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25] gi|151938178|gb|EDN57018.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262336729|gb|ACY50524.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25] Length = 214 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+ Sbjct: 143 INTHTAPATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202 Query: 223 QAIAKA 228 QAIA A Sbjct: 203 QAIAWA 208 >gi|153839891|ref|ZP_01992558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|260902461|ref|ZP_05910856.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|149746588|gb|EDM57576.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|308109572|gb|EFO47112.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|328471379|gb|EGF42274.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 200 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+ Sbjct: 129 INTHTAPATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 188 Query: 223 QAIAKA 228 QAIA A Sbjct: 189 QAIAWA 194 >gi|94495818|ref|ZP_01302397.1| probable transcriptional regulator [Sphingomonas sp. SKA58] gi|94424510|gb|EAT09532.1| probable transcriptional regulator [Sphingomonas sp. SKA58] Length = 491 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 20/240 (8%) Query: 13 SLQELSPRLHLIQ--NRIKARNFALYTINSALDF--PRRQQLICELHNYDLDSGDIPNIL 68 S +L PR + R + + ++L+C+ ++ Sbjct: 246 SFADLEPRRQAENELRHSEERFVTTFRLAPVAMAITTWDERLLCDTNDAFHQLTGWSPDE 305 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 L + G+ + + + K Sbjct: 306 AMGKAMPALR-LWEEPKFLDAALEDLAERTAFRGRDARLRAKDGGITDCLVSAASISLRK 364 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDF-------------LELFKKRSSAAR--N 173 + +++ + + +E GA V+ D L + Sbjct: 365 DTCILWVIQDIHERRHSELELIGAIEAVMKDTNWFSRTVVEKLANLRAPHGAARPVETSE 424 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G IA+++G+S +T+ ++ K+ R QAI A GY Sbjct: 425 LTRREKEVLSLLCGGGDDAAIAKEMGVSRNTLRNHVARVYAKIGVNRRAQAILWARERGY 484 >gi|332710029|ref|ZP_08429984.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332351172|gb|EGJ30757.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 241 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L+L GYT++EIAE+L L + TV ++ S KL +R QA +A+R G Sbjct: 179 PLTERELTVLELIVAGYTNDEIAERLLLGLGTVKTHIRSVLWKLCCDDRTQAAVQALRSG 238 Query: 233 YI 234 + Sbjct: 239 LV 240 >gi|297580300|ref|ZP_06942227.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385] gi|297535946|gb|EFH74780.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385] Length = 207 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 80 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 139 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 ASNPFDTLTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199 Query: 227 KAIRF 231 + Sbjct: 200 LYLER 204 >gi|206975821|ref|ZP_03236732.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962842|ref|YP_002341420.1| DNA-binding response regulator [Bacillus cereus AH187] gi|206745915|gb|EDZ57311.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217067023|gb|ACJ81273.1| DNA-binding response regulator [Bacillus cereus AH187] Length = 200 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|167033593|ref|YP_001668824.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166860081|gb|ABY98488.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 262 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 56/212 (26%), Gaps = 22/212 (10%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 + + + P+ + D F + + Sbjct: 42 SWVALLFSAGQPQVFAECPSEDGNPDPLFQDYLNGLYLL-DPFYVASREAAASGLVRLAD 100 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHG 151 R + I F V+L + + F + ++ Sbjct: 101 VAPECFEQTDYYQRYFRLNVVADEIQFNVQLDAQRTLCLSLGCKRRFTLEQVTLLELLRP 160 Query: 152 ACYQVITDFLELFKKRSSAA-------------------RNLTERETSCLQLAGDGYTSE 192 ++ + ++ AA LT RE +L G +S+ Sbjct: 161 WVSGLMRQRMAFERELLEAATKPAPHWQSRMEEKVEQMQSPLTGRELEVGRLMLSGCSSK 220 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 EIA KL +SV TV + KL ++ + Sbjct: 221 EIARKLEISVETVKVHRKHMYSKLGIKSQSEL 252 >gi|91225640|ref|ZP_01260714.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269967600|ref|ZP_06181651.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|91189760|gb|EAS76034.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269827795|gb|EEZ82078.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] Length = 214 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+ Sbjct: 143 INTHTAPATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202 Query: 223 QAIAKA 228 QAIA A Sbjct: 203 QAIAWA 208 >gi|28869333|ref|NP_791952.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|28852574|gb|AAO55647.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330878542|gb|EGH12691.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331019215|gb|EGH99271.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 41/95 (43%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E +S LT RE L L G+++ EI EKLG Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGASVPEALTPRERQVLGLVAGGFSNREIGEKLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|332161247|ref|YP_004297824.1| GerR-family transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665477|gb|ADZ42121.1| GerR-family transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861302|emb|CBX71545.1| transcriptional regulatory protein uhpA [Yersinia enterocolitica W22703] Length = 209 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + ES L RL + F I + G + ++ Sbjct: 48 VHVAVMDISMPDESGLSLLKRLRQKMPQFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107 Query: 141 LAN--EVIIEAHGACYQVITDFLEL---FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + HG + D L ++ LT RE QL +G + + IA Sbjct: 108 PDELVQALRTVHGGGLYLCADALRALRHMPQQPQQLAILTPREKEVFQLLINGISVKSIA 167 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+L LS TV+ + + KL+ ++ + A++ + Sbjct: 168 EQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206 >gi|304394580|ref|ZP_07376499.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130] gi|303293241|gb|EFL87622.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130] Length = 221 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ G ++ EIAE LG+S TV+++ + K + + +A+R G Sbjct: 154 ELTSREMQVLQSLAKGRSNREIAEVLGVSPKTVDSHRSNIMRKFGVHSIATLLVEAMRQG 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|254688650|ref|ZP_05151904.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 6 str. 870] gi|256256897|ref|ZP_05462433.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 9 str. C68] gi|260754126|ref|ZP_05866474.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260883151|ref|ZP_05894765.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297247749|ref|ZP_06931467.1| two-component system, NarL family, response regulator [Brucella abortus bv. 5 str. B3196] gi|260674234|gb|EEX61055.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872679|gb|EEX79748.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297174918|gb|EFH34265.1| two-component system, NarL family, response regulator [Brucella abortus bv. 5 str. B3196] Length = 213 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V LE +KRS L+ RE L L +G ++ EIA +LG+S TV + Sbjct: 129 YFSSGVSEALLESGEKRS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL + AI Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208 >gi|253999276|ref|YP_003051339.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253985955|gb|ACT50812.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 213 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ ++ L++RE G T+ +IAE L LS TV +L Sbjct: 128 LEATVAQQMAIQQLSGEANPVDVLSDREFEVFIALAKGKTTNDIAETLSLSPRTVGTHLY 187 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL+A N + A+R G I Sbjct: 188 NIKQKLNANNSAEIALIAMRSGLI 211 >gi|322432955|ref|YP_004210204.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9] gi|321165182|gb|ADW70886.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 210 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 40/88 (45%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I A + I + + L+ RE L+ G +++ IA L LS HTV Sbjct: 120 IRRVHAGQRRIPPEIAAEMAEHAGDDILSAREIEVLRHVAAGNSNKIIASNLTLSEHTVK 179 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL A +R A+ A+R G++ Sbjct: 180 GHIKNILSKLGASDRTHAVMIALRRGFL 207 >gi|320009929|gb|ADW04779.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 222 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A+ + A ++IT+F ++ + A LTERET L Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKIAEAPRPPAMARIGDLTERETEVLV 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA L ++ T+ ++ VKL +R QA A + Sbjct: 169 LIAQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219 >gi|271500356|ref|YP_003333381.1| LuxR family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270343911|gb|ACZ76676.1| two component transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 215 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 16/142 (11%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY----- 154 RL L + F V + M ++++ H A Sbjct: 70 LARLRETSLSGRIVVFTVSNHEEDVISAFKSGADGYLLKDMEPEDLLVALHQAAAGKMVL 129 Query: 155 ------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + E + + LT RE L+L G ++ IA KL ++ TV + Sbjct: 130 SDTLTPVLAASLRETRSTDTRDIQQLTPREKDILKLIAQGLPNKVIARKLTITESTVKVH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIR 230 + K+ +R++A ++ Sbjct: 190 VKHLLKKMKLRSRVEAAVWVVQ 211 >gi|225181065|ref|ZP_03734512.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168262|gb|EEG77066.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 207 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L+ KK+ A+ LT+RE L+L G+G +++EIA+KL L+ TV Y+ + VKL Sbjct: 132 LHAILKGEKKKDPASFQLTKREFEVLKLVGEGLSNDEIAQKLFLTPGTVRNYISNLLVKL 191 Query: 217 DAVNRIQAIAK 227 + +R Q Sbjct: 192 NLRDRTQLAIF 202 >gi|302529657|ref|ZP_07281999.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302438552|gb|EFL10368.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 276 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSS----AARNLTERET 179 + +E L E+ A + L + ++ LT RE Sbjct: 159 RRMAAPTAVPAAERGDLHAELTAIAGSITDETARQRLLAVCERLRPELDLPGVALTPREI 218 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G T++EI+++LGL +TV +YL A KL NR+QA+ +A G + Sbjct: 219 DVLRLVSEGCTNDEISDRLGLLPNTVKSYLKHAMRKLAVSNRVQAVNRARAAGLL 273 >gi|262041407|ref|ZP_06014611.1| monoamine regulon transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041261|gb|EEW42328.1| monoamine regulon transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 227 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 12/215 (5%) Query: 15 QELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + R L I I + Y +N+ L + LHN ++ Sbjct: 11 DAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPENYILHNISDNTHQQYLE-NFQPL 64 Query: 74 DDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D L HF+ + + + + + +R + Sbjct: 65 DPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERRIVAGI 121 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + ++E A V + ++ LT +E + + +G +++ Sbjct: 122 SLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEEDDLPAILTAKEREIVGMVREGASNK 180 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 IA +L +S+ TV +L + K + VNR + +++ Sbjct: 181 LIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215 >gi|302346377|ref|YP_003814675.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] gi|302151055|gb|ADK97316.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] Length = 214 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 36/89 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + C L LT+ ET L+ G T+ EIAEK S HTV Sbjct: 119 LQGQRFLCQHATNMILAPTALADKEIVALTKTETEILKEIALGATTREIAEKRFSSFHTV 178 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N + + KL N +AI A+R G + Sbjct: 179 NTHRKNIFRKLGVNNVHEAIRYAMRSGLV 207 >gi|291302120|ref|YP_003513398.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571340|gb|ADD44305.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT RE + L G G ++EEI+ L +S T ++ A KL + +R Q Sbjct: 146 DGPAPLVSALTPREREVVTLVGQGKSNEEISRLLHISHTTAKTHVSRAMTKLGSRDRAQL 205 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 206 VVAAYESGLV 215 >gi|51894355|ref|YP_077046.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858044|dbj|BAD42202.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 203 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L G+T++EIA +L +SV TV Y KL R + + A+ Sbjct: 142 PLSPRELEVLRLVALGHTNQEIALQLNVSVRTVETYKTRICEKLGVYTRSEMVRYALEHK 201 Query: 233 Y 233 Sbjct: 202 L 202 >gi|317969061|ref|ZP_07970451.1| DNA-binding response regulator [Synechococcus sp. CB0205] Length = 236 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + + LT RE LQL G ++ I ++L LSV TV ++ KL+A +R Sbjct: 158 AFAEGQGTPLAQLTPREVDILQLMAGGTENQGIGQRLHLSVETVKDHVRHIFHKLNAKSR 217 Query: 222 IQAIAKAIRFGYI 234 IQA + IR G + Sbjct: 218 IQAAVQGIRLGLV 230 >gi|254385834|ref|ZP_05001154.1| erythropoiesis-stimulating protein [Streptomyces sp. Mg1] gi|194344699|gb|EDX25665.1| erythropoiesis-stimulating protein [Streptomyces sp. Mg1] Length = 331 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 79/227 (34%), Gaps = 15/227 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L E+ R+ + + +++ ++ A R + + D Sbjct: 116 VEQLVGLDEIRNRISGLAHGLQSE-----LMSFAPGGGHRPETLEASKPNDAALLGRGVR 170 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + + D + + + + E E + + A PV Sbjct: 171 MRSLFQDSV----RNSQSTVAYATWLSELGGEIRTAPDLPTRMMIFDGATAVIPVSSEDS 226 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G V+ T + A + E A + + E + L+ +E + ++L Sbjct: 227 AAGAVVLTGHGTLTALCALFENVWAGARTLGTSEERDEG------GLSSQERTVIRLLAQ 280 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T E IA++L +S T +LDA +R + +A++ G++ Sbjct: 281 GLTDEAIAKRLAVSPRTARRLANGLMERLDAASRFEFGVRAVQRGWL 327 >gi|16077609|ref|NP_388423.1| two-component response regulator YdfH [Bacillus subtilis subsp. subtilis str. 168] gi|221308372|ref|ZP_03590219.1| hypothetical protein Bsubs1_03053 [Bacillus subtilis subsp. subtilis str. 168] gi|221312693|ref|ZP_03594498.1| hypothetical protein BsubsN3_03024 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317617|ref|ZP_03598911.1| hypothetical protein BsubsJ_02988 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321893|ref|ZP_03603187.1| hypothetical protein BsubsS_03059 [Bacillus subtilis subsp. subtilis str. SMY] gi|321314195|ref|YP_004206482.1| two-component response regulator YdfH [Bacillus subtilis BSn5] gi|68566110|sp|P96686|YDFI_BACSU RecName: Full=Transcriptional regulatory protein ydfI gi|1881349|dbj|BAA19376.1| ydfI [Bacillus subtilis] gi|2632842|emb|CAB12349.1| two-component response regulator [YdfH] [Bacillus subtilis subsp. subtilis str. 168] gi|320020469|gb|ADV95455.1| two-component response regulator (YdfH) [Bacillus subtilis BSn5] Length = 213 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTE+E L+ G S+ IA LG+S TV + L S KL A +R +A+ A++ G Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKG 207 Query: 233 YI 234 + Sbjct: 208 IL 209 >gi|158318878|ref|YP_001511386.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114283|gb|ABW16480.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 225 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 43/145 (29%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 + + AG + V + + Sbjct: 72 AEADWDVRVLILTTFDPDEYVYQALRAGASAFVLKDIPADQLAGAVRTVADGGALLAPSI 131 Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 T+ + S LT+RE + G ++ EIA++L + TV +++ Sbjct: 132 TRRLIGRFTERRAVGSAPSRRVERLTDRERDVVVAVARGSSNSEIAQELFIGPATVKSHV 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL +R Q + A G + Sbjct: 192 SSILTKLGLRDRTQVVVFAYESGLV 216 >gi|303327531|ref|ZP_07357972.1| DNA-binding response regulator, LuxR family [Desulfovibrio sp. 3_1_syn3] gi|302862471|gb|EFL85404.1| DNA-binding response regulator, LuxR family [Desulfovibrio sp. 3_1_syn3] Length = 226 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + S L+ RE +L DG + + IA+ L +S TV + + Sbjct: 142 LAELLRRRRDAAEHGGSGDLSALSPREKEIFRLLADGKSVKSIAQDLCISPKTVETHKYN 201 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A + + AIR G + Sbjct: 202 LLTKLQAGSVGDLVKIAIRHGLV 224 >gi|255038247|ref|YP_003088868.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254951003|gb|ACT95703.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 205 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L +G T+ +IAE+L +SV TVN++ + +K + N I A G Sbjct: 145 LTRREKEVLVLIAEGLTNPQIAEQLFISVTTVNSHRQNLLIKFEVSNTASLIKLAAGLGL 204 Query: 234 I 234 I Sbjct: 205 I 205 >gi|254492498|ref|ZP_05105670.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxidans DMS010] gi|224462390|gb|EEF78667.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxydans DMS010] Length = 215 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ + + L+ RE L L GYTS+EIA+ L LS +TV Y Sbjct: 130 IARYLLNELSIAEPAKPEQKNSPDVLSPREKEVLLLVSKGYTSKEIAKMLDLSYYTVREY 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL N++QA+++A G I Sbjct: 190 VSNVYKKLSVKNKMQAVSEATLLGII 215 >gi|159037948|ref|YP_001537201.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916783|gb|ABV98210.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 230 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + + LT RE L G ++ EIA+ L +S TV + Sbjct: 141 LDRFLDHLAELLPDPAAGPTRLLDPLTGREREVLIQVARGRSNAEIAQALSVSETTVKTH 200 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 +G KL +R+QA+ A G I Sbjct: 201 VGHVLTKLRLRDRVQAVVLAYESGLI 226 >gi|24374816|ref|NP_718859.1| LuxR family DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24349500|gb|AAN56303.1|AE015768_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis MR-1] Length = 206 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT + L L G++++ IA+ L +S TV A++ + KLD NR QA Sbjct: 147 KTLTPSQFRVLHLIAAGHSNKTIADSLNISEKTVKAHISAIFEKLDVKNRTQAALL 202 >gi|330810227|ref|YP_004354689.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378335|gb|AEA69685.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 494 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G +EIA +L L+ +TV ++ + KLD +R +AI A G Sbjct: 424 ELTARERDVLGLICEGLADKEIAARLKLAPNTVRNHVATLYSKLDVHSRSEAIVWARERG 483 Query: 233 Y 233 Sbjct: 484 L 484 >gi|320536217|ref|ZP_08036263.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320146919|gb|EFW38489.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 201 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L ERE L+L DG ++EIA++L LS T+ Y+ S KL +R Q + Sbjct: 142 EDLNEREADILELIADGLNNKEIAQRLYLSEGTIRNYVSSILEKLALRDRTQLVVY 197 >gi|319793774|ref|YP_004155414.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596237|gb|ADU37303.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 264 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + + + L+ RE L+L GY +EEIA +L +S TV Sbjct: 176 RLARRLLVHLDHQRSNQSPVRPPETKAALSAREREVLRLVATGYVTEEIALQLTISAQTV 235 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 NA++ + KL A R QA++ A G + Sbjct: 236 NAHVKNIYRKLHAHTRAQAVSFASHRGLL 264 >gi|311106149|ref|YP_003979002.1| transcriptional regulator DegU [Achromobacter xylosoxidans A8] gi|310760838|gb|ADP16287.1| transcriptional regulatory protein DegU [Achromobacter xylosoxidans A8] Length = 223 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q S+ LT RET +Q G +++ IA +L +S TV ++ + Sbjct: 141 QASLAAQAPQAAGSAERHRLTARETQIVQWLARGASNKVIARELDVSESTVKIHVQNVLK 200 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL+ +R+Q A+ G Sbjct: 201 KLNLTSRVQVAVYAVEHGL 219 >gi|312199045|ref|YP_004019106.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311230381|gb|ADP83236.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 222 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G + L + R+ L++RE LQL Sbjct: 107 AGATGYLLKDAARDDLLRAVRAAARGEAVLAPSVAATLMNRVRTPETGPLSQRELEVLQL 166 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +A +L ++ TV +L + KL +R A+A+A G + Sbjct: 167 VAAGATNRVVAAQLFVTEATVKTHLLNIYAKLGVNDRAAAVAEAFGRGLL 216 >gi|307700360|ref|ZP_07637400.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] gi|307614571|gb|EFN93800.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] Length = 217 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE ++L + +++IA +L +SV TV ++ S KL NR +AKA R G Sbjct: 156 LSERELQVVRLVAEALENKQIASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGL 215 Query: 234 I 234 + Sbjct: 216 L 216 >gi|302532515|ref|ZP_07284857.1| two-component system regulator [Streptomyces sp. C] gi|302441410|gb|EFL13226.1| two-component system regulator [Streptomyces sp. C] Length = 259 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + E LT RE L+L G ++EIA +L ++ TV +L Sbjct: 166 RRLIEAYSARTEGPGGDDRTLSRLTNREQDVLRLVARGLGNDEIAAELVVTEATVKTHLH 225 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA+A A G + Sbjct: 226 RTMTKLGLRSRAQAVAVAYEAGLV 249 >gi|290957194|ref|YP_003488376.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260646720|emb|CBG69817.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 1089 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 8/165 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG---LLPFAGIAFPVRLGFHKNGYVI 133 L P W + R+ L G R + + Sbjct: 913 LRRAEGLSDPDTWSDVVTAFEPLERPYDLARVRHRLAEALLARGTDDEARDRATELLRLA 972 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDG 188 + A + + + + A LT RE L+L G Sbjct: 973 AAVADHLGARPLADAVALLARRARLTLSRAPEPALAPADPVAALGLTGREHDVLRLVAVG 1032 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+ +IAE+L +S T + ++ + KL R +A A A R G Sbjct: 1033 RTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRVGL 1077 >gi|227329494|ref|ZP_03833518.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 210 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 10/133 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 L + I V ++ A E +++A Sbjct: 71 LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDAIRNGDAFSEQV 130 Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ + R S LTERE LQ G ++++IA L +S TV ++ + Sbjct: 131 RDVLRHRIAIQDTPSPFTVLTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLR 190 Query: 215 KLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 191 KLNVRSRVAATVL 203 >gi|167644589|ref|YP_001682252.1| two component LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347019|gb|ABZ69754.1| two component transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 212 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 +AG A +R + S + I H + ++ + L Sbjct: 92 YAGDAQALRALKAGATGYLLKSTLRRELLDTIRNVHAGRRHLQSEVAH-EIAIHAIDEAL 150 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE L+L G +++IA +L LS TV A+L S KLD +R A+ A R G I Sbjct: 151 SEREAHVLRLVAAGRANKQIAWELSLSEDTVKAHLKSIFAKLDVADRTHAVTIAARRGII 210 >gi|148260734|ref|YP_001234861.1| response regulator receiver protein [Acidiphilium cryptum JF-5] gi|146402415|gb|ABQ30942.1| response regulator receiver protein [Acidiphilium cryptum JF-5] Length = 267 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Query: 161 LELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L L + + LT R+ G ++ IA +LG+S TV ++ + Sbjct: 181 LLLDDRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMR 240 Query: 215 KLDAVNRIQAIAKA 228 K+ A NR QA+ KA Sbjct: 241 KIGATNRTQAVYKA 254 >gi|84393114|ref|ZP_00991879.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] gi|84376271|gb|EAP93154.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] Length = 212 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G +S+EIA+ L +S TV + + KLD + + A+ G Sbjct: 150 PLSRREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVNSG 209 Query: 233 YI 234 + Sbjct: 210 LV 211 >gi|326403930|ref|YP_004284012.1| LuxR family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050792|dbj|BAJ81130.1| LuxR family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 319 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Query: 161 LELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L L + + LT R+ G ++ IA +LG+S TV ++ + Sbjct: 233 LLLDDRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMR 292 Query: 215 KLDAVNRIQAIAKA 228 K+ A NR QA+ KA Sbjct: 293 KIGATNRTQAVYKA 306 >gi|302387016|ref|YP_003822838.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] gi|302197644|gb|ADL05215.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] Length = 213 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 33/65 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RET L L G T EIAE+L LSV + +L S KL+ N+I A+ KA Sbjct: 149 PDIPLTGRETQVLTLLAQGLTQREIAEELFLSVSCIKKHLASIYSKLNVNNKISAVQKAR 208 Query: 230 RFGYI 234 + Sbjct: 209 ESNIL 213 >gi|259048250|ref|ZP_05738651.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035099|gb|EEW36354.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 216 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + LT RE + G +++EIA+ L LS TV + + KL+ +R Q Sbjct: 145 EESFDAEKWGLTTREVELIAQVAKGLSNKEIAQTLFLSEGTVKNNISTILSKLELRDRTQ 204 Query: 224 AIAKAIRFGY 233 + A Sbjct: 205 LVIFAYENKL 214 >gi|238060903|ref|ZP_04605612.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237882714|gb|EEP71542.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R + A LT+RET L+L G + ++IAE+LGLS TV ++ + KL NR Sbjct: 150 AATAGRDTDAPRLTDRETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNR 209 Query: 222 IQAIAKAIRFGY 233 ++ AI G Sbjct: 210 VELTRYAIERGL 221 >gi|192359370|ref|YP_001983632.1| response regulator [Cellvibrio japonicus Ueda107] gi|190685535|gb|ACE83213.1| response regulator [Cellvibrio japonicus Ueda107] Length = 225 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 20/206 (9%) Query: 43 DFPRRQQLICELHNYD-----LDSGDIPNILIETYGDDFLFHFNSGLLP----IIWQSIQ 93 D P R++ L ++ + L + LP I + Sbjct: 24 DTPLRERFARILGDWPGGELVAACATLSEALDRLHRQPVDLLMADLNLPDGHGIEAIQLL 83 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---NEVIIEAH 150 E+ + L I GY++ ++ L L E+ Sbjct: 84 RRLYPEADAMVISALADDETVLGAI------EAGAVGYLLKDADSLELVEAIQELRAGRS 137 Query: 151 GACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + + LT RET L+ G+T E+AE LG+S HTV + Sbjct: 138 PISSSIARILVRRMGGSTPATPTPELTPRETEILRGIAKGFTYTELAEWLGISRHTVPVH 197 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL A NR +A+ +A + G I Sbjct: 198 IKNIYRKLAANNRSEAVYEASKRGLI 223 >gi|170077264|ref|YP_001733902.1| LuxR family transcriptional regulator [Synechococcus sp. PCC 7002] gi|169884933|gb|ACA98646.1| transcriptional regulator protein, LuxR family [Synechococcus sp. PCC 7002] Length = 91 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 41/73 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +++++ L+ERE + L G T+ EIA +L +S TV+ ++ + K NR+ Sbjct: 1 MATEKTASEAALSEREIEIVDLVAAGLTNHEIAARLDISKRTVDNHISNILTKTATDNRV 60 Query: 223 QAIAKAIRFGYIC 235 + A+++G +C Sbjct: 61 SLVRWALQWGKVC 73 >gi|89893086|ref|YP_516573.1| hypothetical protein DSY0340 [Desulfitobacterium hafniense Y51] gi|89332534|dbj|BAE82129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L L GY+++EIAE+L +SV TV +Y KL+ R + + A++ G Sbjct: 171 LTVREQNFLSLMAMGYSNKEIAEELSVSVKTVESYRSKIKDKLNLKTRHELVRYALKKGL 230 >gi|297161212|gb|ADI10924.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ LT RE L G +++EIA +L +S TV ++ A KL A +R Q + Sbjct: 156 AARLDALTGREREVLVQVAGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 215 Query: 228 AIRFGYI 234 + G + Sbjct: 216 SYETGLV 222 >gi|126739864|ref|ZP_01755555.1| transcriptional regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126719096|gb|EBA15807.1| transcriptional regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 245 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 75/241 (31%), Gaps = 17/241 (7%) Query: 9 KKSSSLQEL------SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + SL +L R ++ + + +I A + + N Sbjct: 5 QLIDSLDKLLAQGPGQDRWMAAEDIAEQLG--VKSILVAEAHSSMKAISWLSTNMPGHWM 62 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + D F+ G +++ ++ ++ + F + Sbjct: 63 EEYIAEEYVKDDPFVEGLAGGPGSMLFHCGQVRRDEAKTRKAWTLSHQLKNTGFGTLYCT 122 Query: 122 VRLGFHKNG-YVIFTSEFLMLANEVI------IEAHGACYQVITDFLELFKK-RSSAARN 173 G +V E + + A + ++ K+ R+ Sbjct: 123 RFGKDGDFGKFVTLGFEETATDKPQLDMTGKDLLAALLSTTISSESAPKAKQYRTLQKDI 182 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R+ L L +G + IAE LG+S V+ + A L A R A+A A+ G Sbjct: 183 LSTRQREVLSLLAEGMMTARIAETLGISEVAVSQHFAKARKALGANTREHALALAMSLGL 242 Query: 234 I 234 I Sbjct: 243 I 243 >gi|116072236|ref|ZP_01469503.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116064758|gb|EAU70517.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 227 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE+ L+ G +++E+AE L +S T+ +++ + KL +R QA+ AIR G Sbjct: 167 GLSDRESEVLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAG 226 Query: 233 Y 233 Sbjct: 227 M 227 >gi|78047743|ref|YP_363918.1| two-component system LuxR family regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036173|emb|CAJ23864.1| two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 213 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L L G ++++I L +S TV A++ + KL +R A+ A+R Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRR 206 Query: 232 GYI 234 G + Sbjct: 207 GIL 209 >gi|269837258|ref|YP_003319486.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786521|gb|ACZ38664.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 549 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 1/115 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 + L + G L A + A + L + A LT RE Sbjct: 432 VLIALACRELGDEETARIELDAARWSFSQLGAAPDVARVEALSRTHPTAPTA-GLTAREV 490 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G T+ IAE L +S TV ++ + KLD +R A A A G + Sbjct: 491 EVLRLVAEGKTNRAIAEDLFISEKTVARHISNIFTKLDLSSRAAATAYAYEHGIV 545 >gi|223934123|ref|ZP_03626068.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|302024316|ref|ZP_07249527.1| response regulator protein [Streptococcus suis 05HAS68] gi|330833306|ref|YP_004402131.1| two component LuxR family transcriptional regulator [Streptococcus suis ST3] gi|223897209|gb|EEF63625.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|329307529|gb|AEB81945.1| two component transcriptional regulator, LuxR family [Streptococcus suis ST3] Length = 200 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LT E+ L+L +G +++EIA +L LS TV Y+ S KL A NR Sbjct: 127 ELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENR 186 Query: 222 IQAIAKAIRFGYI 234 A+ A G++ Sbjct: 187 TAAVRIAQEKGWL 199 >gi|149190820|ref|ZP_01869085.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148835382|gb|EDL52354.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 211 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + L+ RE S L+L G +S++IA+ L +S TV + + KLD + + A Sbjct: 146 AKSNPLSRREESVLKLVAQGCSSKKIAQMLDISYRTVETHRQNIKHKLDLHSTAELAKYA 205 Query: 229 IRFGY 233 + G Sbjct: 206 LENGL 210 >gi|327450891|gb|EGE97545.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|328754312|gb|EGF67928.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] Length = 237 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A +R G Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALVLRVG 208 >gi|325929180|ref|ZP_08190322.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325540465|gb|EGD12065.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 213 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L L G ++++I L +S TV A++ + KL +R A+ A+R Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRR 206 Query: 232 GYI 234 G + Sbjct: 207 GIL 209 >gi|300788286|ref|YP_003768577.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797800|gb|ADJ48175.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 195 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%) Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 E ++ + VR G + L AH ++I Sbjct: 53 PECPSSSLLQEAVEAGVRGFV---VRDGPIDETLRAIRAVHAGLPWFDSSVAHRL-LRLI 108 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D + + T RE ++ +G ++ EIA ++ ++ TV ++ KL Sbjct: 109 ADRRQGGGWSAFKDDPFTPREREVVECLAEGMSNTEIAARMSMAQRTVKYHVSHVLAKLG 168 Query: 218 AVNRIQAIAKAIRFGY 233 A +R A+A A G+ Sbjct: 169 ARDRAHAVALAYGSGF 184 >gi|229065002|ref|ZP_04200300.1| Two-component response regulator [Bacillus cereus AH603] gi|228716303|gb|EEL68015.1| Two-component response regulator [Bacillus cereus AH603] Length = 189 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NR Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176 Query: 222 IQAIAKAIRFGYI 234 I+AI A G+I Sbjct: 177 IEAITIAEEKGWI 189 >gi|126739386|ref|ZP_01755079.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126719486|gb|EBA16195.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 203 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 33/74 (44%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 E A L+ RE L+ G +++EIA +L L T+ ++ + KLDA Sbjct: 129 MREEEATDHPLAEKLSPRELEVLESLCKGLSNKEIARELDLQEVTIKLHVRTLCRKLDAK 188 Query: 220 NRIQAIAKAIRFGY 233 NR QA A G Sbjct: 189 NRTQAALTAKEAGL 202 >gi|119717344|ref|YP_924309.1| response regulator receiver [Nocardioides sp. JS614] gi|119538005|gb|ABL82622.1| response regulator receiver [Nocardioides sp. JS614] Length = 212 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 10/153 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG------FHKNGYVIFTSEFLMLANEV 145 + + ++ + G + + G + G F + V Sbjct: 53 ADLQLPDGTGLDIARAVRGENDSTGLVVLTMHSGDDQIFAAMEAGASGFVGKEAPAQEVV 112 Query: 146 IIEAHGACY---QVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 H A V + E +R A L++RE L L +G + IAE+L +S Sbjct: 113 RTIRHAAVSPRSFVCSGLAEAMVRRVGAGTARLSDREHDVLLLLAEGLGTAAIAERLFMS 172 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T ++LG KL A NR QA+ A+R G + Sbjct: 173 ESTAKSHLGHIYQKLGAANRAQALVTAMRIGLL 205 >gi|320334053|ref|YP_004170764.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755342|gb|ADV67099.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 225 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEI 194 + ++ +V+ D L ++ + LT RET L L G ++ I Sbjct: 124 RDTIVRVARGERYVQPRVAEVLADALSRERRGVTVTPERLTPRETEILALIARGLANKRI 183 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A+ L L+ TV ++ + KL A +R+ A+ A G + Sbjct: 184 AQALTLTEGTVKVHVSNILGKLGATDRLDAVRVAREAGLL 223 >gi|258624779|ref|ZP_05719710.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM603] gi|262173878|ref|ZP_06041555.1| transcriptional regulatory protein UhpA [Vibrio mimicus MB-451] gi|258582941|gb|EEW07759.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM603] gi|261891236|gb|EEY37223.1| transcriptional regulatory protein UhpA [Vibrio mimicus MB-451] Length = 208 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 15/169 (8%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + P+ I E+ L RL F I + G Sbjct: 40 FHALT-HSPVDVAIIDISMPDENGLSLLERLRQHNPNFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + S+ + V C + + ++ +LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLVDLTKREVEVFDLL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++IA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 157 VQGQDVKDIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFALQHHLL 205 >gi|229087841|ref|ZP_04219955.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228695477|gb|EEL48348.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 189 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NR Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176 Query: 222 IQAIAKAIRFGYI 234 I+AI A G+I Sbjct: 177 IEAITIAEEKGWI 189 >gi|229821508|ref|YP_002883034.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567421|gb|ACQ81272.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 225 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 +G V + L + + A + + S Sbjct: 99 AALAAGASGFLLKTSRPDQLAAAVRSVAAGDALLSPEVTRA--VIERAVAREAGPPPAPS 156 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA+ LTERE L+L G ++EIA +L + TV ++ + KL +R+QA+A A Sbjct: 157 PAAQALTERELVVLRLLARGLNNDEIAAELVVGRATVKTHVSNVLAKLQLRDRVQAVAYA 216 Query: 229 IRFGY 233 R G Sbjct: 217 YRHGL 221 >gi|66044246|ref|YP_234087.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63254953|gb|AAY36049.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 920 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (5%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLEL 163 LL + P G + E +E +++ ++ Sbjct: 789 RDEARALLLR---SLPAASGGALMPFNALLGEHPEWLHEQLVQLPPCRVQAALLEKLPAC 845 Query: 164 FKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 AA L+ RE LQL G +++EI+E+L +S+HTV + KL Sbjct: 846 CTPSPEAAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVER 905 Query: 221 RIQAIAKAIRFGYI 234 R QA+A+A G + Sbjct: 906 RTQAVARAKTLGLL 919 >gi|288556565|ref|YP_003428500.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547725|gb|ADC51608.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 210 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ ++ ++ +T RE + ++L G+G +++EI+E+L LSV T+ ++ Sbjct: 128 HVAAKVMPRLMK-KTNDAAVDPAITPRELAIMKLVGEGLSNKEISEELSLSVGTIKNHIS 186 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R Q AIR + Sbjct: 187 AILDKLSLRDRTQLAIYAIRHNVV 210 >gi|239978487|ref|ZP_04701011.1| two component system response regulator [Streptomyces albus J1074] gi|291450385|ref|ZP_06589775.1| two component system response regulator [Streptomyces albus J1074] gi|291353334|gb|EFE80236.1| two component system response regulator [Streptomyces albus J1074] Length = 222 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L+L G T++ IA L +S T ++ KL +R Q + A Sbjct: 150 PRLNALTDREREVLRLVAGGLTNDRIAATLVVSPATAKTHVSRVMTKLGVRDRSQLVVLA 209 Query: 229 IRFGYI 234 G + Sbjct: 210 YESGLV 215 >gi|218129935|ref|ZP_03458739.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697] gi|217988045|gb|EEC54370.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697] Length = 217 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 QV + R LT+RE L+ +G ++EIA+ L +S +TV+ + Sbjct: 134 AEQVRNQMRRSDEGRR---EELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHL 190 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KLDA N I AI G I Sbjct: 191 LDKLDAKNVADLIMTAISRGII 212 >gi|5834774|emb|CAA74720.1| response regulatory protein [Streptomyces reticuli] Length = 217 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 36/109 (33%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + + LT RE L Sbjct: 108 AGATGYLLKAERAEDLFTAIQAAAQGRPALSPPVADRVMSRLRNPRPALTPREQDILAHL 167 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA L +S TV +L KL R A+A A + Sbjct: 168 SRGLSNHAIARALYISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 216 >gi|320333728|ref|YP_004170439.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755017|gb|ADV66774.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 210 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + +LT +E LQL G+ + EIA++LG++ TV ++ Sbjct: 125 RLHPEAARRLVR-DFRSPDMREHLTPKEVLTLQLIARGHANREIAQELGITEATVKTHVS 183 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 KL +R QA A++ G Sbjct: 184 RLLGKLGLTSRTQAALYALKAGL 206 >gi|320106469|ref|YP_004182059.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924990|gb|ADV82065.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 210 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 145 VIIEAHGAC--YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +I H ++ + + NL++RE LQL G ++ EIAE+L + Sbjct: 117 LIRAMHRVHTGHRFLPQVISEALSSRVPGSNLSQREQEVLQLLFAGKSNREIAEELQIKE 176 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ ++L+ +R QA+ + ++ G + Sbjct: 177 TTVKTHVSVILMRLNVEDRTQAVVEGLKRGLV 208 >gi|262165533|ref|ZP_06033270.1| DNA-binding response regulator LuxR family [Vibrio mimicus VM223] gi|262171689|ref|ZP_06039367.1| DNA-binding response regulator LuxR family [Vibrio mimicus MB-451] gi|261892765|gb|EEY38751.1| DNA-binding response regulator LuxR family [Vibrio mimicus MB-451] gi|262025249|gb|EEY43917.1| DNA-binding response regulator LuxR family [Vibrio mimicus VM223] Length = 212 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 150 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 209 Query: 233 YI 234 + Sbjct: 210 LL 211 >gi|259418943|ref|ZP_05742860.1| two component transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259345165|gb|EEW57019.1| two component transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 214 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 12/159 (7%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-----PVRL--GFHKNGYVIFTSEF 138 P + + R G+A P R G + F + Sbjct: 56 PFDLVLLDYNMPGMNGLDGLQRALKANGGR-GVAILSGSAPTRTAQDALDAGAIGFIPKT 114 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL----TERETSCLQLAGDGYTSEEI 194 + + + + ++ + ++ S+ A L + RE L G +++EI Sbjct: 115 MGAQSLLNAVRFMSAGEIYVPVELMREEASAPAHPLLAQLSPREVEVLSGLCRGQSNKEI 174 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A L L T+ ++ + KLDA NR QA A G Sbjct: 175 ARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGL 213 >gi|254425578|ref|ZP_05039295.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188001|gb|EDX82966.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 209 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A L+ RE LQL +G T+ +I+ +L ++ TV ++G KL +R QAI Sbjct: 140 RRMGAPTLSTREQEVLQLIAEGKTNLQISAELTIAASTVRFHVGHILDKLGVSDRTQAIV 199 Query: 227 KAIRFGYI 234 +A+ G + Sbjct: 200 QAVNQGIV 207 >gi|114769502|ref|ZP_01447128.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] gi|114550419|gb|EAU53300.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] Length = 222 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 49/94 (52%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F ++ + + A +++ F+++ + + LT+RE LQ DG +++E Sbjct: 108 FCNDEQTVDELLETAITVASGKMVFPFMDVRELQDDPLFMLTKREKIILQFLADGSSNKE 167 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +AE + +S++TV +L + KL NR QAI+ Sbjct: 168 LAESMKISINTVKFHLSNLYEKLGVKNRSQAISF 201 >gi|110681357|ref|YP_684364.1| nitrate/nitrite response regulator protein, putative [Roseobacter denitrificans OCh 114] gi|109457473|gb|ABG33678.1| nitrate/nitrite response regulator protein, putative [Roseobacter denitrificans OCh 114] Length = 210 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ +L++ + ++ L+ +E L +G T+++++ +L +S +TV +L + Sbjct: 128 KMVFPYLDIREIKTDPIETLSRKEREILDALAEGLTNKQLSARLEISTNTVKFHLSNIFD 187 Query: 215 KLDAVNRIQAIA-----KAIR 230 KL NR QAIA KA R Sbjct: 188 KLSVRNRTQAIAHYYASKARR 208 >gi|302558898|ref|ZP_07311240.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302476516|gb|EFL39609.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 237 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 119 IRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 178 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 179 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 237 >gi|327193774|gb|EGE60651.1| two-component response regulator protein [Rhizobium etli CNPAF512] Length = 223 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166 + I+ V G ++E ++ A E + + V + ++ Sbjct: 85 MLSMHDSREYISSSVMRGAAGYVLKDVSTEEIVAAIETVADGGTYFSSGVFDALM--GER 142 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L L G ++ EIAE LG+S T + + KL I Sbjct: 143 AEEGSDPLTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIR 202 Query: 227 KAIRFGY 233 A+ G Sbjct: 203 YALDHGI 209 >gi|317128969|ref|YP_004095251.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315473917|gb|ADU30520.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 199 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 NGY++ S LAN + G EL + S + LTERE L Sbjct: 94 AGVNGYMLKDSPSDELANAIRSVMAGRRIYA----SELVDEVYSESNPLTEREREVLVHM 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG +++EIA L L+ TV Y+ + KL+ NRI+AI K G+ Sbjct: 150 ADGKSTKEIANILHLTNGTVRNYISTILDKLEVGNRIEAITKVKEKGW 197 >gi|302869871|ref|YP_003838508.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|315501333|ref|YP_004080220.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302572730|gb|ADL48932.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|315407952|gb|ADU06069.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 272 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 5/153 (3%) Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 + + ++ + + + P G + V+ Sbjct: 124 RSNRHRVADTARDAAAVGGPTRPAAPGRTQGGP--GWPATAPVDAAGLPTVVPVQRGEDP 181 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + + + +A LTERE L +G ++ EI +L +S Sbjct: 182 DDPAAADG---AEAPRPGAAQRPARSPRSAIGLTERELQVLLGMAEGKSNAEIGRELFVS 238 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV + KL A +R A+A R G + Sbjct: 239 EDTVKTHARRLFRKLGARDRAHAVAAGFRAGLV 271 >gi|239906985|ref|YP_002953726.1| NarL family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239796851|dbj|BAH75840.1| NarL family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 226 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 9/121 (7%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD--FLELFK-------KRSSAARN 173 R G + L+ A E ++ IT L L + R A + Sbjct: 99 RAGAMGYVVKDSAATSLVAAIEAVLRGERYLDAAITPQVLLRLDEYAARKTGPRDPAYDS 158 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + IA +L +S TV + + KL N + + A R G Sbjct: 159 LTRREQQILRLLAEGRSVAAIATELFISKKTVENHRANICGKLGLANLAELVRYAARLGI 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|237711747|ref|ZP_04542228.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|229454442|gb|EEO60163.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] Length = 262 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L+L G+ S+EIA+KL +S+HTV+ + + KL N ++AI Sbjct: 197 PVVSLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVHNSLEAIRLGQ 256 Query: 230 RFGYI 234 G + Sbjct: 257 ESGLL 261 >gi|254297002|ref|ZP_04964455.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 406e] gi|157806917|gb|EDO84087.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 406e] Length = 225 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 156 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 215 Query: 232 GY 233 G Sbjct: 216 GL 217 >gi|300088662|ref|YP_003759184.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528395|gb|ADJ26863.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 248 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 9/95 (9%) Query: 149 AHGACYQVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIAEKLG 199 +++ +L + ++ L+ RE S L+L DG T++EIA KL Sbjct: 153 LLYRAIRLLRLPTKLQEASDDSSEITSADIVVQQLSPREMSTLRLVSDGMTNKEIAMKLN 212 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S V Y+ KL+ NR Q KA + I Sbjct: 213 CSESAVKGYVTRIMNKLNVTNRTQIALKASQLNII 247 >gi|269961289|ref|ZP_06175655.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833955|gb|EEZ88048.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 214 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+ Sbjct: 143 ISTHTAPATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202 Query: 223 QAIAKA 228 QAIA A Sbjct: 203 QAIAWA 208 >gi|251789457|ref|YP_003004178.1| transcriptional regulator NarL [Dickeya zeae Ech1591] gi|247538078|gb|ACT06699.1| two component transcriptional regulator, LuxR family [Dickeya zeae Ech1591] Length = 215 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 16/142 (11%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY----- 154 RL L + F V M ++++ H A Sbjct: 70 LARLRETSLSGRIVVFTVSNHEEDVISAFKGGADGYLLKDMEPEDLLVALHQAAAGKMVL 129 Query: 155 ------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + E + + LT RE L+L G ++ IA KL ++ TV + Sbjct: 130 SDTLTPVLAASLRETRSSDTRDIQQLTPREKDILKLIAQGLPNKVIARKLTITESTVKVH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIR 230 + K+ +R++A ++ Sbjct: 190 VKHLLKKMKLRSRVEAAVWVVQ 211 >gi|228990612|ref|ZP_04150577.1| Regulatory protein to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Bacillus pseudomycoides DSM 12442] gi|228769138|gb|EEM17736.1| Regulatory protein to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Bacillus pseudomycoides DSM 12442] Length = 55 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EI EKL +S+ TV ++ + KL NR++AI KA+ G I Sbjct: 5 LATGAINKEIGEKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLI 54 >gi|229187578|ref|ZP_04314718.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228595945|gb|EEK53625.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 189 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|156975940|ref|YP_001446847.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116] gi|156527534|gb|ABU72620.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116] Length = 214 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+ Sbjct: 143 ISTHTAPATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202 Query: 223 QAIAKA 228 QAIA A Sbjct: 203 QAIAWA 208 >gi|153834026|ref|ZP_01986693.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01] gi|148869670|gb|EDL68656.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01] Length = 214 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+ Sbjct: 143 ISTHTAPATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202 Query: 223 QAIAKA 228 QAIA A Sbjct: 203 QAIAWA 208 >gi|317476127|ref|ZP_07935379.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316907765|gb|EFV29467.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 255 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G S+EIA+ L +S++TVN++ + KL A N +AI A R Sbjct: 190 EPLTNRELEVLRLMKQGLLSKEIADTLQISINTVNSHRQNILQKLKANNSAEAINFAQRL 249 >gi|304406148|ref|ZP_07387805.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344732|gb|EFM10569.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 221 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF------KKRSSAARNLT 175 +G++ + L + G Q++ ++ ++ Sbjct: 94 DSGVSGFISKAATREQLITAIRCALRGEAVVPIQLLKQLRRSEVRFQQTDGKTVEEVSIN 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+E L+ G +++EIA KL +S TV L KL +R +AI +A R G I Sbjct: 154 EKEQLILREVASGGSNKEIAAKLYISQRTVEYNLTRIFEKLGVRSRSEAIVEANRLGLI 212 >gi|294626147|ref|ZP_06704754.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665211|ref|ZP_06730510.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599596|gb|EFF43726.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605034|gb|EFF48386.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 235 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + L A + H V ++ N+ + Sbjct: 86 AAGDGHEAAWLMPPRPSDLREARVPIHALGTTHGMLCVAWSEGRPAPGNDDVQALQAFAL 145 Query: 155 QVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E K ++ R L++RE L L G T+ +A +LG+S TV Sbjct: 146 LLPAMVAEPAKPVATRRRKLLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL+ +R QA A++ G Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|226307167|ref|YP_002767127.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226186284|dbj|BAH34388.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 224 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIA +L +S T ++ A KLD +R Q + A + G Sbjct: 156 QLTPRELEVVTLVALGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCG 215 Query: 233 YI 234 + Sbjct: 216 VV 217 >gi|298247492|ref|ZP_06971297.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550151|gb|EFH84017.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 886 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L +G ++ EIA +L LSV TV + + KL +R QA+A+A R Sbjct: 824 EPLSGRELEVLGLIAEGLSNSEIARRLVLSVGTVKVHTRNIYGKLSVSSRTQALAQATRL 883 Query: 232 GY 233 Sbjct: 884 NL 885 >gi|271963284|ref|YP_003337480.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506459|gb|ACZ84737.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A LT RE L L G ++ EIA++L L+ TV +LG KL +R Q + A Sbjct: 146 AALGGLTAREREVLVLVARGLSNMEIADRLDLAEATVKTHLGRVLAKLGLRDRAQVVVYA 205 Query: 229 IRFGYI 234 G + Sbjct: 206 YESGLV 211 >gi|256786173|ref|ZP_05524604.1| two component system response regulator [Streptomyces lividans TK24] gi|289770068|ref|ZP_06529446.1| two component system response regulator [Streptomyces lividans TK24] gi|289700267|gb|EFD67696.1| two component system response regulator [Streptomyces lividans TK24] Length = 226 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 40/103 (38%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 ++ + + + A + R +LT RE L L G G + Sbjct: 123 AILAAGAGQSVLDREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLS 182 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + IAEKL +S TV ++ + K +R A+ +AI G Sbjct: 183 NRGIAEKLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225 >gi|315500523|ref|YP_004089325.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] gi|315418535|gb|ADU15174.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 218 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 36/76 (47%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 E ++ +A +LT RE + L +G T++EI LG+S TV A++ K Sbjct: 136 AAMRAPEPVERDPTALSSLTGREREIVHLIAEGMTNKEIGRSLGISPATVKAHVERLIAK 195 Query: 216 LDAVNRIQAIAKAIRF 231 L +R QA A R Sbjct: 196 LGVTDRTQAAVLASRH 211 >gi|284991375|ref|YP_003409929.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064620|gb|ADB75558.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 219 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 156 VITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ + L + LT RE ++L +G +S EIA L +S TV + + Sbjct: 138 LMREHLHRAGRGEPVPERVLTAREAEVVKLIAEGCSSREIAALLVISTKTVERHRANILQ 197 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD +R Q AIR G + Sbjct: 198 KLDMRDRTQLTRYAIRTGLL 217 >gi|319942139|ref|ZP_08016457.1| two-component system response regulator NarL [Sutterella wadsworthensis 3_1_45B] gi|319804349|gb|EFW01233.1| two-component system response regulator NarL [Sutterella wadsworthensis 3_1_45B] Length = 226 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 15/129 (11%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL---------------MLANEVIIEAHGACYQVITDFLE 162 + V I + E + A + +TD L Sbjct: 90 VILTVSDSGEDFFSCIRAGADGYFLKDMEPEKVLYCVRESLEGRLTVDPAMVRYLTDLLR 149 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +LT+RE L G T++ I +L +S TV ++ KL +R+ Sbjct: 150 GKAPKVEETVSLTDREEDVLSCIARGMTNKMIGRELKISDGTVKGHVKHLLKKLGFNSRV 209 Query: 223 QAIAKAIRF 231 +A A Sbjct: 210 EAAVWAAER 218 >gi|290955012|ref|YP_003486194.1| luxR family two-component response regulator [Streptomyces scabiei 87.22] gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces scabiei 87.22] Length = 230 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAG 186 G + ++ + A + +++ +++ + ++ A LT RE L L G Sbjct: 118 RGSDLVSAVRTVAAGQSLLDPSATA-RLMARLRQGPQEEREPEALPGLTGREREILALIG 176 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +G T+ +I ++L L+ TV ++ KL R+QA A + Sbjct: 177 EGLTNRQIGQRLFLAEKTVKNHISRLLAKLGVERRVQAAVIATQA 221 >gi|72162677|ref|YP_290334.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916409|gb|AAZ56311.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 217 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L+ A G ++ EIA++L LS TV ++ KL R AIA+ Sbjct: 154 GLTEREAEVLEAAARGLSNAEIAKELFLSEKTVKNHINRIFRKLGVRTRAAAIAR 208 >gi|260426271|ref|ZP_05780250.1| transcriptional regulatory protein DegU [Citreicella sp. SE45] gi|260420763|gb|EEX14014.1| transcriptional regulatory protein DegU [Citreicella sp. SE45] Length = 214 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + LT RE L G +++E+A+ L +SV TV + + KL + Sbjct: 135 ALRPVMTGGREQLTNREQMVLLQLAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISST 194 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 195 AGLTRYALEHGVL 207 >gi|159036019|ref|YP_001535272.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914854|gb|ABV96281.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 195 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 7/164 (4%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D S P + + ++ V A ++ Sbjct: 39 AAADTVGRAIRSCPQPYRTGDYRLLVLADAFDPADVSFALRAGVRAMLSIT-SEPEKLAA 97 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 V T++ ++ +++ + + + LT R+T+ L L DG+ Sbjct: 98 AVHATNQSEGRMPSEVL------LKLLHSRVAGNPVSTPSPSPLTPRQTAVLNLMADGHP 151 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + IA L S HTV + ++L NR A+A+AIR G I Sbjct: 152 NVAIATALSCSEHTVKNVIYDMMMRLQVNNRAHAVARAIRAGLI 195 >gi|81428161|ref|YP_395161.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609803|emb|CAI54849.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 201 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L++RET LQ +G +++E+A +L LS TV Y+ + KL A NRI+AI A Sbjct: 137 PQNPLSQRETDVLQAVANGLSNKEVASQLFLSDGTVRNYMSTILSKLAASNRIEAIQIAR 196 Query: 230 RFGYI 234 G++ Sbjct: 197 HNGWL 201 >gi|37521779|ref|NP_925156.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212777|dbj|BAC90151.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 224 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L +T+ EIAE+L +S TV+++ KL N + A+ +G Sbjct: 158 LTEREREILSLISQEFTNIEIAERLFISPRTVDSHRARLMQKLGTRNTAGLVRIAMEYGL 217 Query: 234 I 234 + Sbjct: 218 L 218 >gi|23006062|ref|ZP_00048562.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 195 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G ++EEIA L LS TV ++ KL A +R Q + A Sbjct: 127 EELTPREREVLVEVAGGLSNEEIAGSLFLSESTVKTHVSRVMAKLGARDRAQLVVAAYES 186 Query: 232 GYI 234 G + Sbjct: 187 GVV 189 >gi|326440343|ref|ZP_08215077.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 LM ++ ++ AR LTERE L+L G T+ EIAE+ Sbjct: 126 RLMARSDSLLFPAAVRSLAAEHGARRTAPVPPWARKLTEREADTLRLMAAGLTNGEIAER 185 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G+ TV +++ + K A +R QA+ A G+I Sbjct: 186 MGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 222 >gi|282856726|ref|ZP_06265990.1| two component transcriptional regulator, LuxR family [Pyramidobacter piscolens W5455] gi|282585422|gb|EFB90726.1| two component transcriptional regulator, LuxR family [Pyramidobacter piscolens W5455] Length = 215 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ TS + L + + G + + S+ L+ RE L Sbjct: 94 LSAGARGFIVKTSAVMELT-QALQSVIGGGIYLDSAIANSVDSASNELEQLSPREREVLL 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G+ +E+A KL ++ TV A+L S K A N+ +A+ A++ G I Sbjct: 153 LSSQGFPVKEVAAKLFITERTVQAHLSSVYAKFGAKNKTEALIIALKNGII 203 >gi|291612623|ref|YP_003522780.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582735|gb|ADE10393.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 215 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA---RNLTER 177 L +GY++ L ++ +G V ++L K+ + + LT R Sbjct: 97 LNAGADGYLLKDQTDEQLIRDLHGILNGAPPLSPPVARRIMQLAKQTPATSLLLVPLTAR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G + EIA+ L +S HT+ A++ S KLD +R +A +AIR G I Sbjct: 157 EEEVLTYIAKGLSRTEIAQLLSVSAHTIIAHVRSIYSKLDISSRAEATVEAIRRGLI 213 >gi|239933481|ref|ZP_04690434.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441852|ref|ZP_06581242.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344747|gb|EFE71703.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] Length = 211 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G T L + + LT RET L L Sbjct: 101 AGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVADRLMNRLRTPDTALTRRETEVLALV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++ + +L L+ TV ++L KL+ +R A+A A G I Sbjct: 161 ADGLSNQAVGNRLHLTEGTVKSHLARIYAKLNVDSRTAAVATATDLGLI 209 >gi|145596350|ref|YP_001160647.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145305687|gb|ABP56269.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 268 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A LTERE L +G ++ EI +L +S TV + KL A +R A+ Sbjct: 199 REPRPAVGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAV 258 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 259 AAGFRAGLV 267 >gi|332881678|ref|ZP_08449326.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680317|gb|EGJ53266.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 326 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 SA L++RE + G +++EIAE+L +SV+TV + + + KL + Sbjct: 251 GEDSANDALSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGLT 310 Query: 226 AKAIRFGYI 234 AI G I Sbjct: 311 IYAIVNGLI 319 >gi|302555046|ref|ZP_07307388.1| luxR family two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472664|gb|EFL35757.1| luxR family two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 233 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 4/110 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +R + S ML E + + + +L+ RE Sbjct: 117 IRGSDLVSAVRTVASGRSMLDPETTARL----MRSLRADPAEEPGLAPELASLSPREREI 172 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L GDG T+ EI +KL LS TV ++ KL R+QA A + Sbjct: 173 LALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLASQL 222 >gi|284042986|ref|YP_003393326.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] gi|283947207|gb|ADB49951.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] Length = 873 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G +++ + + L++RE + L+ G + EIA +LG+S +TV ++ Sbjct: 788 GFVAELLDERPAGTAAEAPGDSALSQRERAILRYLPSGLSKREIAGELGVSANTVKTHVS 847 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KLD +R QA+A+A G + Sbjct: 848 SIYRKLDVRSRAQAVARARELGLL 871 >gi|300779752|ref|ZP_07089608.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533862|gb|EFK54921.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 220 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 29/65 (44%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE L+L GYT +EIA +L +SV TV + + K NR Q A Sbjct: 155 AVVDKLTRRELEVLRLLARGYTYKEIASELFISVKTVETHASNVLRKTQTSNRHQLTRWA 214 Query: 229 IRFGY 233 Sbjct: 215 SERAL 219 >gi|163754001|ref|ZP_02161124.1| two component transcriptional regulator, LuxR family protein [Kordia algicida OT-1] gi|161326215|gb|EDP97541.1| two component transcriptional regulator, LuxR family protein [Kordia algicida OT-1] Length = 216 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 39/80 (48%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ + L + + + LT+RET L G EIAE L +S T+ ++ + Sbjct: 137 KLLRNPLTITEDEAIEKVKLTKRETDVLLQLSKGLNYNEIAENLFISSGTIRKHVENIYR 196 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL N+++A+ KA I Sbjct: 197 KLQVHNKMEAVQKAKSQKLI 216 >gi|170728075|ref|YP_001762101.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813422|gb|ACA88006.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 206 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 7/101 (6%) Query: 140 MLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 ++ + A + + I+D L + LT RE + L+L G ++ Sbjct: 104 DISAAEMFYALRVIHNGGIYYSRAISDLLVQSSQEPDKNTVLTTREQTVLRLLASGLNNK 163 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E+A +L +SV T+ + + KL + AI G Sbjct: 164 ELARELDISVRTIETHRRNIKDKLAIKTSAGLVRYAIDHGL 204 >gi|73541423|ref|YP_295943.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118836|gb|AAZ61099.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 257 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 26/186 (13%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP---------VRLG 125 H P + + L L + L Sbjct: 71 PEEAHAQLVERPFDMVLVDSSLAHGNGIDLIGALHARDPRMPIVVISDPAAEADVMSALR 130 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS--SAA----- 171 +GY++ + L+ + QV+ + + A Sbjct: 131 AGASGYLLKERDDTELSVSLRSALRGGMPIDPFIARQVLRSLVPADPHAACSPPAGCAGP 190 Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L+ G T+ EIA L LS T+ +++ + KL R QA +A Sbjct: 191 EARSPLSTRELEILRCIDRGATNREIAAALSLSTLTIESHVKNIHKKLGVKTRTQATFEA 250 Query: 229 IRFGYI 234 R+G + Sbjct: 251 RRYGLL 256 >gi|302872826|ref|YP_003841462.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] gi|302575685|gb|ADL43476.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] Length = 216 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +NL+ERE +L GY++++I++ L +S TV Y+ + KL+ NR Q Sbjct: 153 KNLSERELEIARLIAQGYSNKDISKMLFISEGTVRNYISTILEKLELKNRTQIAIY 208 >gi|258624459|ref|ZP_05719406.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|258583306|gb|EEW08108.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] Length = 216 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|111022468|ref|YP_705440.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821998|gb|ABG97282.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 211 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + L + G++ S Sbjct: 51 DVALLDYRMPELDGSQVAAAVRRAELATRVLLLSAHDESAIVYHALQEGAAGFLPKESTR 110 Query: 139 LMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G + E+ ++ L+ RE L L G + I Sbjct: 111 AEIVKAVLDCAQGRDVLPASLAVGLAGEVRRRSEPVGPALSGREKEVLALIARGQSIPTI 170 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L L+ TV ++ KL +R A+A+A+R G + Sbjct: 171 AGELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRGLL 210 >gi|329938142|ref|ZP_08287593.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302631|gb|EGG46521.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 246 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 128 IRGGARGYVTKTITGSDLVASIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 187 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 188 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 246 >gi|295112119|emb|CBL28869.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Synergistetes bacterium SGP1] Length = 229 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++T F K +S +L+ RE L G +++E+A+K LS TV ++ Sbjct: 129 VAGKLMTSFSR-RKNENSLLDDLSPREKVVLYWLSQGMSNQEVAQKTVLSEKTVKNHVSH 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ +R QA A + G+ Sbjct: 188 MLKKLELRDRTQAAILAWKLGF 209 >gi|229072819|ref|ZP_04206018.1| Two-component response regulator [Bacillus cereus F65185] gi|228710310|gb|EEL62285.1| Two-component response regulator [Bacillus cereus F65185] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|229112766|ref|ZP_04242298.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229153515|ref|ZP_04281693.1| Two-component response regulator [Bacillus cereus m1550] gi|228630119|gb|EEK86770.1| Two-component response regulator [Bacillus cereus m1550] gi|228670600|gb|EEL25912.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|241666813|ref|YP_002984897.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862270|gb|ACS59935.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 210 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + L +RS A L+ RE + G +++IA LG+S TV + KL Sbjct: 126 AEHDRLQGQRSLVA-GLSPREAEVFRFLIRGRLNKQIAHALGISERTVKVHRHQVMEKLG 184 Query: 218 AVNRIQAIAKAIRFGYI 234 + +A++ A G I Sbjct: 185 VRSLAEAVSIAANIGLI 201 >gi|124004721|ref|ZP_01689565.1| transcriptional regulatory protein DegU [Microscilla marina ATCC 23134] gi|123989844|gb|EAY29373.1| transcriptional regulatory protein DegU [Microscilla marina ATCC 23134] Length = 223 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE L L YT++EIA++L +S+ TV + + K N + + KA++ G Sbjct: 160 TPREREVLALILKEYTTQEIADQLFVSIRTVETHRKNLLTKFGVKNVVGLVVKALQMG 217 >gi|186682719|ref|YP_001865915.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465171|gb|ACC80972.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 211 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +L ++ S + L++RE L+L G +++I+ L ++ TV + + KL+ Sbjct: 137 AAKLAERMS--SEELSDRELEVLRLIAKGKNNQQISNVLNIAESTVRFHTNNIFGKLNVS 194 Query: 220 NRIQAIAKAIRFGYI 234 +R QA+ A+ G + Sbjct: 195 DRTQALVTALNRGIV 209 >gi|300786703|ref|YP_003766994.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796217|gb|ADJ46592.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--- 172 A + GY++ + + V + G + T L L + Sbjct: 92 AVFAAMRAGARGYLLKGARNEQIIRAVRVIGDGEAIFSPAIATRVLSLLGTATPRDESFP 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G + IAE+L LS TV ++ KL +R QAIAKA G Sbjct: 152 RLTLREQEILRLVARGMGNASIAEELVLSQKTVRNHVSHIFRKLRVTDRSQAIAKAKEAG 211 Query: 233 Y 233 Sbjct: 212 I 212 >gi|289679770|ref|ZP_06500660.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae FF5] Length = 188 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 41/95 (43%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E ++ LT RE L L G+++ EI EKLG Sbjct: 86 RVARGEEALNSAVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNREIGEKLG 145 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 146 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 180 >gi|258651492|ref|YP_003200648.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554717|gb|ACV77659.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 219 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 19/168 (11%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----ML 141 P + + ++ L +A V VI + Sbjct: 52 PPDVVLLDVHMPDGGGRSVLEQVHSKLPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTI 111 Query: 142 ANEVIIEA--------HGACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAG 186 + + +A ++ L+ F R S A L+ RE L+L Sbjct: 112 SGRELADAIVRVSAGDAVFSPRLAGFVLDAFSDRGSPAPITDPELDLLSPREREVLKLLA 171 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY +EIA +L +S+ TV ++ S K NR + A + Sbjct: 172 RGYAYKEIAAQLFISIKTVETHVSSVLRKTQKSNRYELSRWASDRRLV 219 >gi|228936636|ref|ZP_04099430.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823071|gb|EEM68909.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|255532183|ref|YP_003092555.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255345167|gb|ACU04493.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 151 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL RE LQL G+++ EIA L +S+ TV ++ + VK++ +RI+A+ KA R Sbjct: 89 NLNSREYEILQLLAKGHSNAEIAGDLFISLSTVKTHVSNLFVKMNVKSRIKALEKAKRLK 148 Query: 233 YI 234 I Sbjct: 149 II 150 >gi|163854702|ref|YP_001629000.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258430|emb|CAP40729.1| transcriptional regulator, LuxR-family [Bordetella petrii] Length = 71 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ L+ RE CL + G TS EIA LG+S TVN ++G+A KL NR A+A A+ Sbjct: 2 PAKPLSNREHECLHWSAMGKTSWEIAVILGVSERTVNFHIGNACSKLGVYNRRAAVAIAL 61 Query: 230 RFGYI 234 G + Sbjct: 62 SQGLL 66 >gi|149187073|ref|ZP_01865379.1| two component system response regulator [Erythrobacter sp. SD-21] gi|148829284|gb|EDL47729.1| two component system response regulator [Erythrobacter sp. SD-21] Length = 231 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 2/107 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G ++E ++ A +VI + ++ + R+ LT R+ + + Sbjct: 99 GVMGCMAKSRSAEEIVEAVDVIADGRPYLCKLTIE-QSADAPRTPPIGKLTRRQRKVMAV 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G +++EIA +LG+ TV ++ +A L NR+ A+ +A++ Sbjct: 158 MAMGKSNKEIARELGICEGTVKVHVNAAYRALGVHNRVAAV-RALQN 203 >gi|299137407|ref|ZP_07030589.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600812|gb|EFI56968.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 206 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 44/88 (50%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I A A ++I + A L+ERE L+ G +++ +AE+L +S TV Sbjct: 117 IRAVHAGKRIIPPVIAADLVEHLADDALSEREIEVLRSVASGNSNKLVAEQLAVSEATVK 176 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S KL A +R A+ A++ G+I Sbjct: 177 GHMKSILSKLGAQDRTHAVTIALKRGFI 204 >gi|183983463|ref|YP_001851754.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183176789|gb|ACC41899.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length = 217 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 34/84 (40%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + L ++ LTE+E + L +G T+ +IA ++ L+ TV Y Sbjct: 125 LDNRAAAALMAKLRGGAEQKDPLSGLTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNY 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRFG 232 + KL R QA A R G Sbjct: 185 VSRLLAKLGMERRTQAAVFASRLG 208 >gi|168700566|ref|ZP_02732843.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 216 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 42/84 (50%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ + + +L+ERET ++L GY+++EIA +L LSV TV Y Sbjct: 130 ALATGELSEVNDPARDAGGTGADLSERETEVVRLIALGYSNKEIAGRLKLSVKTVETYKT 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL R+ + A R G++ Sbjct: 190 RSMEKLGVRTRVDIVQYAARRGWL 213 >gi|297585551|ref|YP_003701331.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297144008|gb|ADI00766.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 199 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +E + EA Q F EL + + LTERE ++L +G +++ IAE L Sbjct: 103 DSPSEELAEAIRQIMQGRRIFAPELIDEVYRSENPLTEREKEVMKLMAEGMSTKLIAETL 162 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ TV Y+ + KL+ NRI+AI + G+ Sbjct: 163 FLTNGTVRNYISTILDKLEVDNRIEAIKVYQQKGW 197 >gi|148555723|ref|YP_001263305.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148500913|gb|ABQ69167.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 146 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 9/110 (8%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTERETSCLQL 184 + ++ ++ + + +T RE + L+ Sbjct: 36 LARSHMDEIAIALVAGGFLVLGIVIGIRAFAPRAAPPFDGNPQAIESLGITPRELAVLRE 95 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA +L +S +TV ++ KL A R A+A+A G + Sbjct: 96 LAAGRSNKEIAIRLAVSPNTVKTHVARLFEKLGAARRTDALARARALGIL 145 >gi|330503565|ref|YP_004380434.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328917851|gb|AEB58682.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 860 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 141 LANEVIIEAHGACYQVITDF--LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + E +++ + E + LTERE + LA G ++EEI ++L Sbjct: 763 ESAERQPALQAFIRSLLSAWPGQEARQALDVLEEGLTEREREVVCLAAKGMSNEEIGQQL 822 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ TV +L + KL NR QAI +A + Sbjct: 823 SLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 858 >gi|325964186|ref|YP_004242092.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470273|gb|ADX73958.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 229 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 17/134 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITDFLE---LFKKR 167 +A V VI ++ I +A V + L L Sbjct: 96 LALSVSDAAEDVVAVIRAGARGYVTKTISGAEITDAVYRVAGGDAVFSPRLAGFVLDAFG 155 Query: 168 SSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ A L+ RE ++L GY+ +E+A++L +S+ TV ++ + KL + Sbjct: 156 TAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSAVLRKLQLSS 215 Query: 221 RIQAIAKAIRFGYI 234 R + A + Sbjct: 216 RHELTKWAAERRLL 229 >gi|254718531|ref|ZP_05180342.1| two component transcriptional regulator, LuxR family protein [Brucella sp. 83/13] gi|265983502|ref|ZP_06096237.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306838339|ref|ZP_07471185.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653] gi|264662094|gb|EEZ32355.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306406630|gb|EFM62863.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653] Length = 213 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V LE +KRS L+ RE L L +G ++ EIA +LG+S TV + Sbjct: 129 YFSSGVSEALLESGEKRS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL + AI Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208 >gi|159898692|ref|YP_001544939.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891731|gb|ABX04811.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 218 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L L G+T+ IAE+L LS TV ++ + KLD +R QA A+ G Sbjct: 152 RLTERELAVLNLIATGHTNASIAEQLRLSEGTVRNHVSTILSKLDVADRTQAALLAVEHG 211 Query: 233 Y 233 Sbjct: 212 L 212 >gi|320160659|ref|YP_004173883.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994512|dbj|BAJ63283.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 215 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 42/87 (48%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H A + + ++ + LTERE LQ GY++ EIA L +S TV+ Sbjct: 126 ALHPAVTRYVLGQIKNMPDEPAPEEELTEREKEVLQFMAQGYSNAEIARLLVVSNATVHT 185 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL+ +R QA+ A++ G + Sbjct: 186 HVSRILSKLNVSSRTQAVLYALKRGIV 212 >gi|319948180|ref|ZP_08022340.1| putative two-component system response regulator [Dietzia cinnamea P4] gi|319438164|gb|EFV93124.1| putative two-component system response regulator [Dietzia cinnamea P4] Length = 217 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE ++ G ++ EIA L +S TV ++ KL +R Q + A Sbjct: 155 DSLTPREREMVEQIATGRSNAEIATALFISEETVKTHVRRVLQKLSLRDRAQVVVYAYEN 214 Query: 232 GYI 234 G + Sbjct: 215 GVV 217 >gi|312890536|ref|ZP_07750072.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311296994|gb|EFQ74127.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 206 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L +++ A T RE +L + +++IA+KL +S TV + + K Sbjct: 129 FSSLLPDEFEKNDALSRFTTREIEIFRLIVKEFNNKQIAQKLFISERTVETHRRNILRKA 188 Query: 217 DAVNRIQAIAKAIRFGYI 234 DAVN + + A + Sbjct: 189 DAVNIVGLVKYAYENKIV 206 >gi|312959972|ref|ZP_07774486.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311285756|gb|EFQ64323.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 89 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L ++ S + + LT E L+ A +G T EI++ S TV +L + KLD NR Sbjct: 17 ALRRRLSLSGKPLTPSELEILRWASEGKTVWEISQIRATSQATVKFHLRNIYGKLDVSNR 76 Query: 222 IQAIAKAIRFGY 233 +QA+ +A+R G Sbjct: 77 VQAMNEAVRQGL 88 >gi|262164972|ref|ZP_06032710.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223] gi|262027352|gb|EEY46019.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223] Length = 220 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166 + V ++ + ++ Q + +L + Sbjct: 93 VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 152 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 153 ESNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 212 Query: 227 KAIRF 231 + Sbjct: 213 LYLER 217 >gi|168070046|ref|XP_001786672.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660742|gb|EDQ48513.1| predicted protein [Physcomitrella patens subsp. patens] Length = 214 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN---LTER 177 L GY++ LA + + ++ + ++ + A N LT R Sbjct: 96 LSHGAEGYLLKAIHPKDLAAGIRVVQAGGTLISQEMASKMIKNMNSATPAKHNEFGLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L G ++EIAE L LS TV Y+ + KL+ R +A KA G Sbjct: 156 EIEVLHKLAAGLRNQEIAEALFLSEGTVKNYISTIYSKLNVKGRREATQKARDSGM 211 >gi|37519864|ref|NP_923241.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35210856|dbj|BAC88236.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 236 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 18/222 (8%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN--ILIE 70 SLQ+L +H I+ + + F ++ I D P + + Sbjct: 4 SLQQLFEEIHQIEGEENLQ--SHLAPKIGAYFAAQRSGIFLFDRLLSDRKLRPVLNVALS 61 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + + P+ + + L AG PV G Sbjct: 62 IERNPIARYIAERHTPVH----EGLVTSPRAWALVCPRPDHWHVMAG---PVLDRNQLVG 114 Query: 131 YV--IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-----AARNLTERETSCLQ 183 V ++ + + C + AA LT RE Sbjct: 115 AVGCTRARSMPAFDHQNLTDLSAICLHLSVWTTTARASPKPQFQTLAAHRLTPRELQIAG 174 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L G T+ EI +L ++ ++V L KL+ +R + I Sbjct: 175 LVALGRTNAEIGTELWITENSVKQALKRMYRKLEVTSRTEMI 216 >gi|313202129|ref|YP_004040787.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|312441445|gb|ADQ85551.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 232 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 36/73 (49%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LE +++ LT+RE LQ DG ++ IA KLG+S TV ++ KL Sbjct: 158 QALLEPRTRKADDDVALTDREQEILQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLK 217 Query: 218 AVNRIQAIAKAIR 230 +R++A A R Sbjct: 218 LTSRLEAAVWAHR 230 >gi|167758853|ref|ZP_02430980.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704] gi|167663593|gb|EDS07723.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704] Length = 207 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A ++ +E + L +G +++EIA++L LS TV Y+ S KL+ +R Q Sbjct: 145 AHEISGKELEVISLVAEGLSNKEIAKRLFLSEGTVRNYISSILDKLELRDRTQLAVY 201 >gi|260776036|ref|ZP_05884931.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC BAA-450] gi|260607259|gb|EEX33524.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC BAA-450] Length = 212 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L +G +S++IA L +S TV + + KLD + + A+ G Sbjct: 150 PLSRREEAVLKLVAEGNSSKKIAALLSISYRTVETHRQNIKQKLDLHSTAELAKYAVEQG 209 Query: 233 YI 234 + Sbjct: 210 LL 211 >gi|254390047|ref|ZP_05005268.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703755|gb|EDY49567.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 723 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + A + ++ + T LT RET L+L G + I Sbjct: 616 AALRTVSAGDAVVAPRLLTRLIGTFVAPQRTTEEVRLDGLTPRETEVLRLIATGLDNTGI 675 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+LG+ V TV ++ S KL +R QA+ A G + Sbjct: 676 AEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 715 >gi|182436531|ref|YP_001824250.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777153|ref|ZP_08236418.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465047|dbj|BAG19567.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657486|gb|EGE42332.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 231 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 113 IRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|113867436|ref|YP_725925.1| transcriptional regulator [Ralstonia eutropha H16] gi|113526212|emb|CAJ92557.1| transcriptional regulator, LuxR-family containing alpha/beta hydrolase domain [Ralstonia eutropha H16] Length = 378 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 36/90 (40%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E +V R A LT RE ++L G + +IA L L Sbjct: 284 ETEPAWLRWLDEVRAFLPATEPVRDPAFSALTRRERDIVELIAQGRDNAQIAAHLDLCEK 343 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ S KL+ NR QAI A + G+ Sbjct: 344 TVRNHITSIFAKLEVENRAQAIVLARKAGF 373 >gi|110634204|ref|YP_674412.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285188|gb|ABG63247.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 310 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Query: 146 IIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++E + EL K+ LT RE L L +G +++EIA++LG+S Sbjct: 220 LMEMGSTAHHSFAQASELDLIKRLPRPEEPLTGREQEVLSLVLEGRSNKEIAKQLGISHR 279 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAI 229 TV + A K +A +Q I +A+ Sbjct: 280 TVEIHRSRAMAKYNATTAMQLIRRAM 305 >gi|152977535|ref|YP_001377052.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|114152690|gb|ABI52594.1| two-component response regulator [Bacillus cytotoxicus] gi|152026287|gb|ABS24057.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 200 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +E + EA + + EL L++RE L LA +G T+ +IA+ L Sbjct: 105 DSPSEELAEAIRNVMKGKREISPELMFGLWQEQNPLSDREREVLLLAKEGKTTNDIAKAL 164 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV Y+ KL+A NRI+AI A G+I Sbjct: 165 YLSPGTVRNYISEVLTKLNAKNRIEAITIAEEKGWI 200 >gi|317128933|ref|YP_004095215.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315473881|gb|ADU30484.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 708 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Query: 164 FKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++RS ++ L++RE L L GY++ +IA L +S HTV ++ KLD Sbjct: 630 MEERSPKSKITEDLKLSKRELDVLDLVLKGYSNSDIANTLFISDHTVKNHMTKILQKLDC 689 Query: 219 VNRIQAIAKAIRFGY 233 +R QAIAK + GY Sbjct: 690 TDRSQAIAKVYQMGY 704 >gi|238756079|ref|ZP_04617401.1| Two component transcriptional regulator, LuxR family [Yersinia ruckeri ATCC 29473] gi|238705685|gb|EEP98080.1| Two component transcriptional regulator, LuxR family [Yersinia ruckeri ATCC 29473] Length = 209 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156 L + I V +I EV++E Q Sbjct: 72 LRHEGIAAKIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEVLLEHLCLAAQGESVFSRE 131 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +TD+L ++ + LTERE LQ G +++++A +L +S TV ++ + KL Sbjct: 132 VTDYLASRHEQINPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 191 Query: 217 DAVNRIQAIAKAIRF 231 + +R+ A + Sbjct: 192 NVRSRVAATILYLEN 206 >gi|253988248|ref|YP_003039604.1| two-component response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638760|emb|CAR67377.1| two-component response regulator. hexose phosphate transport syste regulatory protein uhpa [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779698|emb|CAQ82859.1| two-component response regulator. hexose phosphate transport syste regulatory protein uhpa [Photorhabdus asymbiotica] Length = 210 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 11/184 (5%) Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + + Y + PI + ES L RL F I Sbjct: 23 LENDLEIAGQYSSANEAWLDLLRNPIDVAVMDIAMPDESGLHLLTRLRQKRPDFRTIILS 82 Query: 122 VRL------GFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN 173 + G + ++ + + H + D L+ ++ + Sbjct: 83 IYDTTAFVQSALDAGACGYLTKRCGPEELVQAVRSVHKGGCYLCADALKALRQTPQDIKA 142 Query: 174 L---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L T RE L +G +++ IAE+L LS TV+ + + KL + I+ + A++ Sbjct: 143 LQILTPREREIFDLLINGISAKTIAEQLNLSPKTVHVHRANILGKLQCDSTIELVHYALQ 202 Query: 231 FGYI 234 + Sbjct: 203 HQLL 206 >gi|254391784|ref|ZP_05006980.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294813562|ref|ZP_06772205.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|197705467|gb|EDY51279.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326161|gb|EFG07804.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSE 192 + V + H A + + + R+ A + LTERE ++ G T+E Sbjct: 125 GGSLISPTITVRLLRHMASPEPDRNGRPAAEHRAPARLSEPLTERELDVIRRVARGRTNE 184 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A +L +++ TV +LG+ KL A NR++ A A G + Sbjct: 185 EVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGLV 226 >gi|282863714|ref|ZP_06272772.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561415|gb|EFB66959.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A+ + A ++IT+F ++ A LTERET L Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKIATAPRPPAMARIGDLTERETEVLV 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA L ++ T+ ++ VKL +R QA A + Sbjct: 169 LIAQGLSNQEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219 >gi|282881294|ref|ZP_06289978.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS 5C-B1] gi|281304839|gb|EFA96915.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS 5C-B1] Length = 221 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + +E++ L + + L++RE L L GY ++EIA++L Sbjct: 121 VPEDELVRSVLMLEQHAHGTGQHLPPLPKVLKKKVLSDREIEVLSLIVQGYINKEIADRL 180 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + TV + + KL + A+ GY+ Sbjct: 181 NIGMTTVITHRKNIMEKLGVKSVSALTIYAVTHGYV 216 >gi|241207011|ref|YP_002978107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860901|gb|ACS58568.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 260 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ L+L + SA LT RE L L G ++ IA+KL LS +TV ++ + Sbjct: 173 AARSNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYK 229 Query: 215 KLDAVNRIQAIAK 227 K++ NR +A ++ Sbjct: 230 KMNVRNRTEAASR 242 >gi|256376857|ref|YP_003100517.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921160|gb|ACU36671.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 227 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + +L+ EV A +LT+RE L G Sbjct: 119 EAIRVVARGDALLSPEVTRRVLARFAGPAPRAAPATAPNRPA--DLTDREYEVLVHLARG 176 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA +L L TV ++ KL +R A+ A G + Sbjct: 177 SSNAEIAARLHLGETTVKTHVSRVLAKLGLRDRTHAVVYAYEHGVV 222 >gi|222055689|ref|YP_002538051.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] gi|221564978|gb|ACM20950.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] Length = 216 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 35/67 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + NL+++E + G ++EIA++L +S TV ++ K+D V+R Q + Sbjct: 150 KPAGRANLSKKEQDIVAFIAQGLKNKEIAQRLCISEQTVKTHISRIFKKVDVVSRSQLVP 209 Query: 227 KAIRFGY 233 A++ Sbjct: 210 LALKLRI 216 >gi|167574161|ref|ZP_02367035.1| probable two-component response regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 192 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Query: 151 GACYQVITDFLELFK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + VI L + + A LT RE L+L +G + +IAEKL +++ TV Sbjct: 105 WRGHTVIDPALNVDQVTTKAVPDGAVALTPRERQVLKLISEGCRNRDIAEKLTITIKTVE 164 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + KLDA N + A R G Sbjct: 165 THRLNLMRKLDAHNAAELANWAHRLGL 191 >gi|307332179|ref|ZP_07611263.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882168|gb|EFN13270.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ LT RE L G G +++EIA +L +S TV ++ A KL A +R Q + Sbjct: 155 AARLDALTVREREVLVQVGGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 214 Query: 228 AIRFGYI 234 A G + Sbjct: 215 AYETGLV 221 >gi|293605268|ref|ZP_06687654.1| nitrate/nitrite response regulator protein NarL [Achromobacter piechaudii ATCC 43553] gi|292816324|gb|EFF75419.1| nitrate/nitrite response regulator protein NarL [Achromobacter piechaudii ATCC 43553] Length = 221 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L K + LT RET +Q G +++ IA +L +S TV ++ + KL+ Sbjct: 141 QASLAAQGKSPAERHRLTARETQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLN 200 Query: 218 AVNRIQAIAKAIRFGY 233 +R+Q A+ G Sbjct: 201 LTSRVQVAVYAVEHGL 216 >gi|190891418|ref|YP_001977960.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696697|gb|ACE90782.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 207 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ + L +S +LT RE + L G +++ I +L L TV ++ Sbjct: 130 MSTKVMENSLH---DAASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 186 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL NR +A + Sbjct: 187 ILSKLGVSNRTEAALQWRER 206 >gi|117620400|ref|YP_858390.1| csgAB operon transcriptional regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561807|gb|ABK38755.1| probable csgAB operon transcriptional regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 219 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE ++ G ++ EIA+ L +S HT+ ++L + KL+ NR+QA++ A Sbjct: 161 LTVREQEIIRYLMTGASNTEIADSLFVSEHTIKSHLYNVFKKLNVKNRLQAVSWAKE 217 >gi|116694039|ref|YP_728250.1| response regulator [Ralstonia eutropha H16] gi|113528538|emb|CAJ94885.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 297 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 8/162 (4%) Query: 78 FHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLG-----FHKNGY 131 S + ++ I+ LL G + + Sbjct: 135 RLARSAREAVFGSTVPMLAAGIDGRLLWINGSASALLQAQGWPVAIAGAVLPPALRDAVF 194 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + + + G V+ L + A LT RE + G T+ Sbjct: 195 RLCSEAETGADSLHLRRLTGEAGDVVVVELSCS-GLAPAGPALTLREAEVMAWVARGKTN 253 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +IA+ LG+S TVN +L KL R A+A A R Sbjct: 254 RDIADILGMSPRTVNKHLEHIYEKLGVETRTAAVA-ATRRNL 294 >gi|83745537|ref|ZP_00942595.1| Hypothetical Protein RRSL_04596 [Ralstonia solanacearum UW551] gi|207722406|ref|YP_002252842.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] gi|207738930|ref|YP_002257323.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum IPO1609] gi|83727614|gb|EAP74734.1| Hypothetical Protein RRSL_04596 [Ralstonia solanacearum UW551] gi|206587585|emb|CAQ18167.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] gi|206592301|emb|CAQ59207.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum IPO1609] Length = 217 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 4/104 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGY 189 + A E +I +++ F K LT RE +Q G Sbjct: 112 LVAGVRKAAAGEPVIAESMTA-KLVAHFRAPEKPVQPEAVPVERLTLRERDIVQGLVRGD 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++EIA L ++ TV ++ + KL+ +R+Q A+ G Sbjct: 171 SNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVEKGL 214 >gi|311899311|dbj|BAJ31719.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 219 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 10/118 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAA------RNLT 175 H + L E + AH V L R+ AA LT Sbjct: 98 RHGASGFLLKRSGPALLVEAVRAAHAGDSLISPSVTVRLLRHVTGRAPAASGPGLLEPLT 157 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE +G T+ +IA +L +S TV ++ S KL NR+ +A GY Sbjct: 158 RREREVAGKVAEGRTNADIAGELFISAGTVKTHVASIQRKLGVRNRVGIAMRAFELGY 215 >gi|229094465|ref|ZP_04225535.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228688929|gb|EEL42758.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTASEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|261337245|ref|ZP_05965129.1| response regulator of two-component system [Bifidobacterium gallicum DSM 20093] gi|270277604|gb|EFA23458.1| response regulator of two-component system [Bifidobacterium gallicum DSM 20093] Length = 275 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++ IA KL +S+ TV ++ K+ A +R+QA+ A Sbjct: 210 PELALLTDREREVLIEVAHGLSNQVIASKLFISLPTVKTHVAHILSKIHARDRVQAVVFA 269 Query: 229 IRFGYI 234 + Sbjct: 270 YENHLV 275 >gi|170739988|ref|YP_001768643.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194262|gb|ACA16209.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 118 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L L +G +++ IA +LG+SVHT ++GS KLDA R A+A Sbjct: 50 PAPDPGLTPREIEVLGLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAVAH 109 Query: 228 AIRFGYI 234 A R G I Sbjct: 110 AARRGVI 116 >gi|83720601|ref|YP_442380.1| DNA-binding response regulator NarL [Burkholderia thailandensis E264] gi|257138583|ref|ZP_05586845.1| DNA-binding response regulator NarL [Burkholderia thailandensis E264] gi|83654426|gb|ABC38489.1| DNA-binding response regulator NarL [Burkholderia thailandensis E264] Length = 233 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 164 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 223 Query: 232 GY 233 G Sbjct: 224 GL 225 >gi|116622583|ref|YP_824739.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225745|gb|ABJ84454.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 210 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L +A LT RE LQL G +++EIA L LS +TV + + L Sbjct: 131 RRLGALDLPSGAAPAGLTTRELEVLQLIVHGKSNKEIAAVLSLSANTVAVHRANIMQTLG 190 Query: 218 AVNRIQAIAKAIRFGYI 234 N + + AIR G + Sbjct: 191 IHNTAELVVYAIRQGLV 207 >gi|94972309|ref|YP_594349.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554360|gb|ABF44275.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 209 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A LT RE L+L DG ++EIA L +SV TV ++ VKL A +R QA Sbjct: 141 RAPDAGAPLTPRELDVLRLIADGLANKEIAAALEISVSTVKLHVQEILVKLQAADRTQAA 200 Query: 226 AKAIRFGYI 234 KA+R G + Sbjct: 201 VKALRAGLL 209 >gi|332672006|ref|YP_004455014.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332341044|gb|AEE47627.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 212 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 5/118 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFLELFKKRSSAARNLTE 176 +R G T+E L+ A ++ + +++ DF + S+ LT Sbjct: 94 LRAGASGFLLKDVTAERLVDAVRLVADGSMLLGANVTRRLVEDFARRGRVPSTTLDALTP 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE G ++ EIA +L + TV ++ KL +R+Q + G + Sbjct: 154 REHDVALAVARGLSNGEIAAELFIGEATVKTHVSECLRKLGCRDRVQLVVTVHEAGLL 211 >gi|332289326|ref|YP_004420178.1| response regulator FixJ [Gallibacterium anatis UMN179] gi|330432222|gb|AEC17281.1| response regulator FixJ [Gallibacterium anatis UMN179] Length = 193 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+E+E L L +G +++IAE+L +SV TV + K++A N + I KA Sbjct: 133 DQLSEKEKEVLALIIEGNINKQIAERLNISVRTVEVHRSHIMEKMNAKNVAELIRKA 189 >gi|318042198|ref|ZP_07974154.1| DNA-binding response regulator [Synechococcus sp. CB0101] Length = 236 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LTERE LQ T+ EIA L LS+ TV +++ KLDA +R+QA K Sbjct: 165 APLAPLTERELEVLQRIAANATNPEIAADLFLSIETVKSHVAQVLHKLDARSRLQAAIKG 224 Query: 229 IRFGYI 234 IR G + Sbjct: 225 IRLGLV 230 >gi|254392026|ref|ZP_05007217.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294814548|ref|ZP_06773191.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442938|ref|ZP_08217672.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705704|gb|EDY51516.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327147|gb|EFG08790.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 233 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 115 IRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 174 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 175 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 233 >gi|330899624|gb|EGH31043.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 642 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELF 164 LL + P G + E +E ++ ++ Sbjct: 512 DEARALLLR---SLPAASGGALIPFKALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACC 568 Query: 165 KKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A L+ RE LQL G +++EI+E+L +S+HTV + KL R Sbjct: 569 TPSPEPAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERR 628 Query: 222 IQAIAKAIRFGYI 234 QA+A+A G + Sbjct: 629 TQAVARAKTLGLL 641 >gi|330468676|ref|YP_004406419.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811647|gb|AEB45819.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 227 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L L G + EIAE++ ++ TV ++G KL +R+QA Sbjct: 148 PGEDPRLAQLTEREREILLLVAQGLANAEIAERVHVAEATVKTHVGRILAKLQLRDRVQA 207 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 208 VVLAYESGLV 217 >gi|239636020|ref|ZP_04677034.1| transcriptional regulatory protein DegU [Staphylococcus warneri L37603] gi|239598291|gb|EEQ80774.1| transcriptional regulatory protein DegU [Staphylococcus warneri L37603] Length = 224 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S + L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + Sbjct: 148 DTSDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPELV 207 Query: 226 AKAIRFGYI 234 A++ + Sbjct: 208 EYAMKKKLL 216 >gi|228919418|ref|ZP_04082785.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840249|gb|EEM85523.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 217 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE + +G +++ I+++L ++ TV Y+ KL+ NR + Sbjct: 155 PSNLLTPRELEVAKHIMEGKSNKAISKELFITEGTVKNYVSRILEKLELNNRTELTLY 212 >gi|228961616|ref|ZP_04123225.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798098|gb|EEM45102.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|228917960|ref|ZP_04081496.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841757|gb|EEM86868.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|158333495|ref|YP_001514667.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303736|gb|ABW25353.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 225 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G +++ IA L +++ TV A+L + KL+ +R QAI KA++ G Sbjct: 163 LTAREKQVLHWLVQGASNQAIANHLHITIATVKAHLTAVFEKLEVKSRSQAIVKALKLGL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|297623722|ref|YP_003705156.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164902|gb|ADI14613.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 226 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 A + H + + + R LT RET L+ G G +++EIA LGL Sbjct: 134 AAARGEVRLHPEAAKRLLRSVRTSDMR----EALTARETDILRHIGRGESNKEIAAALGL 189 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++ KL +R QA A++ G + Sbjct: 190 SELTVKTHVSRLLSKLGLASRTQAALFALKEGLV 223 >gi|311744719|ref|ZP_07718516.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium marinum DSM 15272] gi|311312028|gb|EFQ81948.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium marinum DSM 15272] Length = 222 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 19/174 (10%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + P + G++ R+ +A V VI Sbjct: 50 AALTATTP-DVVLLDVHMPGGGGGEVLRRMLPRHPDMRFLALSVSDAAEDVIGVIRAGAR 108 Query: 139 L----MLANEVIIEAHGA--------CYQVITDFLELFKKRSSAA------RNLTERETS 180 ++ +++A ++ L+ F A LTERE Sbjct: 109 GYVTKNISGPELLDAIARVAAGDAVFSPRLAGFVLDAFAGTIEVAQIDTDLDRLTERERE 168 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L GY +E+A++L +S+ TV ++ S KL +R + A I Sbjct: 169 VMRLIARGYAYKEVAKELFISIKTVETHVSSVLRKLQLSSRHELTRWANDRRLI 222 >gi|289524366|ref|ZP_06441220.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502394|gb|EFD23558.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 167 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSE 192 F ++ +++ A V+ D+L L + AA L+ RE L+L G ++ Sbjct: 60 FVRGIKAVSQDLVYLTPKAAKIVLEDYLLLKRGSVLAAENKLSPREMEVLRLLVKGEHTK 119 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA K +S TV+ + + KL+ N AIR G + Sbjct: 120 SIASKPSISKSTVDTHRKNIMEKLNCANIADLTRYAIREGLV 161 >gi|256370998|ref|YP_003108822.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256007582|gb|ACU53149.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 216 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 23/143 (16%) Query: 111 GLLPFAGIAFPV--------------RLGFHKNGYVIFTSEFLMLAN--------EVIIE 148 L G+A PV L GY++ + L E +I+ Sbjct: 69 EDLQRRGVAVPVVFYSAYDDEAYLFRALRAGARGYLLKQASGEELVGMLERAAGGETMID 128 Query: 149 AHGACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A A ++ L+ + A LT+RE+ L L G ++ +IA++L L TV Sbjct: 129 AALAGRVALLAARLQFGEFWPGAHLGLTQRESEILDLVVKGLSNRDIAQRLFLGEETVKT 188 Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230 +L S KL R +AIA A+R Sbjct: 189 HLSSIYRKLKVKGRAEAIAVALR 211 >gi|229014521|ref|ZP_04171639.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229136171|ref|ZP_04264924.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229170061|ref|ZP_04297752.1| Two-component response regulator [Bacillus cereus AH621] gi|228613408|gb|EEK70542.1| Two-component response regulator [Bacillus cereus AH621] gi|228647330|gb|EEL03412.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228746871|gb|EEL96756.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L++RE L LA +G T+ EIA+ L LS TV Y+ KL+A NR Sbjct: 117 ELMFGLWQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNR 176 Query: 222 IQAIAKAIRFGYI 234 I+AI A G+I Sbjct: 177 IEAITIAEEKGWI 189 >gi|225181500|ref|ZP_03734942.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225167748|gb|EEG76557.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 212 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT +E L + G ++EIAE + +S TV Y+ + KL+ NR +A + +R Sbjct: 149 HNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRNYVSNILQKLNVSNRTEAASYWMRN 208 >gi|254390102|ref|ZP_05005323.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813469|ref|ZP_06772112.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441818|ref|ZP_08216552.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703810|gb|EDY49622.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326068|gb|EFG07711.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 219 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL---------FKKRSSAAR-- 172 L +G+++ + LA V + A G T L + +S A+ Sbjct: 95 LRAGASGFLLKDASARQLAEGVRVVASGEALLAPTVTRRLINEFSKLAQAPRIASVAQLG 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA L ++ T+ ++ VKL +R QA A Sbjct: 155 ELTERETEVLALIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|88706477|ref|ZP_01104181.1| two component system response regulator [Congregibacter litoralis KT71] gi|88699189|gb|EAQ96304.1| two component system response regulator [Congregibacter litoralis KT71] Length = 225 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 2/104 (1%) Query: 132 VIFTSEFLMLANEVII--EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + + ++ + + + LT RE L+ GDG Sbjct: 112 ELVAAVRTVADGRALLGPDITRRLIEQFARQGGGSSALAERLERLTGREQEALRCVGDGM 171 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++EIA LG+ TV ++ S KL +R QA+ A G Sbjct: 172 NNQEIARHLGIGPATVKTHVSSLLSKLGLRDRAQAVVFAYESGL 215 >gi|86136672|ref|ZP_01055251.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. MED193] gi|85827546|gb|EAQ47742.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. MED193] Length = 214 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K A LT RE + L G +++++A L +SV TV + + KL + Sbjct: 135 ALKPKSGEAREALTGREQTILLELAQGKSNKDVAHSLDISVRTVETHRKNIKRKLGISST 194 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 195 AGLTRYALEHGVL 207 >gi|261407019|ref|YP_003243260.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283482|gb|ACX65453.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 601 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 6/91 (6%) Query: 150 HGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G +++ + + A +LT RE LQ +G + IA KL LS Sbjct: 510 QGMSHKLFAQLEADNSRDDPSSIKASSAYDLTPRELEILQFVSEGLRYKSIASKLYLSDG 569 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y S +KL NR +A+ KA G + Sbjct: 570 TVRNYASSVYMKLGVRNREEAVQKAREAGLL 600 >gi|121592864|ref|YP_984760.1| two component LuxR family transcriptional regulator [Acidovorax sp. JS42] gi|222109644|ref|YP_002551908.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|120604944|gb|ABM40684.1| two component transcriptional regulator, LuxR family [Acidovorax sp. JS42] gi|221729088|gb|ACM31908.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 223 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 42/123 (34%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 + + + +++ E++ + A E Sbjct: 93 LAAALRNGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPTPEPLP 152 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A L+ RE L+ G +++EIA L ++ TV ++ KL +R+QA Sbjct: 153 EEEEPASVLSPREEDVLREIARGLSNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAA 212 Query: 226 AKA 228 A Sbjct: 213 VYA 215 >gi|315501090|ref|YP_004079977.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315407709|gb|ADU05826.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 220 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + LTERE L L G +++EIA +L LS T ++ K Sbjct: 137 AARTRHPEPGPRLNALTEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRV 196 Query: 219 VNRIQAIAKAIRFGY 233 +R Q + A G Sbjct: 197 RDRAQLVVLAYESGL 211 >gi|229590605|ref|YP_002872724.1| putative GerE familyregulatory protein [Pseudomonas fluorescens SBW25] gi|229362471|emb|CAY49377.1| putative GerE familyregulatory protein [Pseudomonas fluorescens SBW25] Length = 261 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 63/216 (29%), Gaps = 17/216 (7%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + N ++ + + + D F G Sbjct: 33 LHQCLPFDNALAIFYPLEGPPQALEEYDAQPSSKPASMLVY--LNGLYLLDPFFQACREG 90 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL--ML 141 +++ + + + + + ++L + + + Sbjct: 91 YASGVYRLEEVAPDHFRQSEYFLNYFHDNVLEDEVQLILQLPGAGTLSLSLGRQRRFSVE 150 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDG 188 ++ ++ + +R+ A + L++RE +L G Sbjct: 151 ETGLMTTMAAWVLPLMQQHWQQSTQRAPAMDSQIRDALSQFGCGVLSDRELEIARLVLRG 210 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++S+ +AE+L +S TV + KLD ++ + Sbjct: 211 FSSKAMAERLNISPDTVKVHRRHLYAKLDISSQPEL 246 >gi|153212273|ref|ZP_01948061.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|124116651|gb|EAY35471.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] Length = 216 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|327405789|ref|YP_004346627.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Fluviicola taffensis DSM 16823] gi|327321297|gb|AEA45789.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Fluviicola taffensis DSM 16823] Length = 186 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L+L G+++ EIAE+L +S++T+ + KL+ R QA+ A R G I Sbjct: 125 SKRELEVLELIAQGFSNHEIAERLFVSLNTIKTHSSKLFEKLEVNRRTQAVEVAKRLGII 184 >gi|284046422|ref|YP_003396762.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950643|gb|ADB53387.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 1/144 (0%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 +I ++ V +AG A + L V+ Sbjct: 70 AIPRLRASSPQTRVVVLTAQRDPSYAGEALRL-GATGYVPKEAAGGHLLEAIAAVMAGGT 128 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q+ + AA LT RE L+L G T+ EIAE+L LSV TV ++ Sbjct: 129 YLEPQLGARLAATAAAAAGAAPELTARELEVLRLIARGLTNREIAERLFLSVRTVESHRA 188 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL R + A+ G + Sbjct: 189 RIQRKLGRSRRSDLVDYALERGLV 212 >gi|229199478|ref|ZP_04326139.1| Two-component response regulator [Bacillus cereus m1293] gi|228583883|gb|EEK42040.1| Two-component response regulator [Bacillus cereus m1293] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|326442029|ref|ZP_08216763.1| LuxR family two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSE 192 + V + H A + + + R+ A + LTERE ++ G T+E Sbjct: 128 GGSLISPTITVRLLRHMASPEPDRNGRPAAEHRAPARLSEPLTERELDVIRRVARGRTNE 187 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A +L +++ TV +LG+ KL A NR++ A A G + Sbjct: 188 EVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGLV 229 >gi|119511948|ref|ZP_01631045.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463368|gb|EAW44308.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 69 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L G + EI+++L +S TV ++ + +L+ +R QA A Sbjct: 3 ELTPREKEVLRLIAVGANNREISQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 58 >gi|113969495|ref|YP_733288.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113884179|gb|ABI38231.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 225 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H V+ + L+ERE L G++++EIA + L+ TV Sbjct: 139 HLIEPSVLEQMQQSSATAQSGPTHYLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKN 198 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KLD +R QA+ K ++ I Sbjct: 199 HVSTILAKLDCRDRTQAVLKGLQLSLI 225 >gi|322383304|ref|ZP_08057104.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152424|gb|EFX45223.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 872 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 7/91 (7%) Query: 151 GACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ + +E+ K RS + L++RE LQ+ G ++EI ++L +S+ Sbjct: 781 RFAQRIQSFVVEVKKGRSLPLASAEQETAILSKRELEVLQVLAAGRRNKEIGKELCISLA 840 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +++ + KL NR++A+ + + Sbjct: 841 TVKSHVINIYSKLQVSNRVEAVERGRELRLL 871 >gi|317405306|gb|EFV85631.1| nitrate/nitrite response regulator protein [Achromobacter xylosoxidans C54] Length = 223 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 39/103 (37%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + + E + ++ + LT RE +Q G + Sbjct: 115 AIRRAAAGEPVIAESMTAKLVEQFRGQASLAAQAPAGQAERHRLTARERQIVQCLARGAS 174 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ IA +L +S TV ++ + KL+ +R+Q A+ G Sbjct: 175 NKVIARELDVSESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 217 >gi|221200509|ref|ZP_03573551.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221206190|ref|ZP_03579204.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221174202|gb|EEE06635.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221179850|gb|EEE12255.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 209 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + R +A LT R+ L+ +G ++ IA++LGLS TV A++ + L Sbjct: 134 AAYAIEPTRHAAGAPLTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHV 193 Query: 219 VNRIQAIAKAIRFGYI 234 +NR QA A + G I Sbjct: 194 LNRTQAAAAGRKAGLI 209 >gi|188026515|ref|ZP_02962402.2| hypothetical protein PROSTU_04517 [Providencia stuartii ATCC 25827] gi|188019236|gb|EDU57276.1| hypothetical protein PROSTU_04517 [Providencia stuartii ATCC 25827] Length = 234 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 59/205 (28%), Gaps = 12/205 (5%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L+ I + I Y ++ Q L+ D Sbjct: 30 LNTIAHIIPVSASVYYLVD-----DFWQPDNHVLYGISSRMHQDYLKHFYQL-DPLHPDK 83 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 G + + + + S + +R + Sbjct: 84 FRGDDLRLVRMAPDMK--QQSQEFYNDFMRPNNITDMAEIFIRRKNKIIAGISVLR-DAP 140 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + ++ + L F + + T +E + L +G +++ IA +LG+ Sbjct: 141 FQQQEVMRLNAILPIA---ELMTFDILPDSLVSYTPKEQEIIHLVREGASNKRIALQLGV 197 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAI 225 S+ TV +L + K + NR + + Sbjct: 198 SLSTVKTHLRNIFTKANVSNRTELV 222 >gi|134287108|dbj|BAF50712.1| putative two component regulator [Streptomyces virginiae] Length = 277 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE+ L L G ++ EIA L LS HTV +++ + KL +R+QA+ A Sbjct: 212 DELTARESEVLDLIARGLSNAEIAGALMLSEHTVKSHVQNLLGKLRLRSRVQAVVYAYEI 271 Query: 232 GY 233 G Sbjct: 272 GL 273 >gi|92115421|ref|YP_575349.1| LuxR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798511|gb|ABE60650.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens DSM 3043] Length = 238 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 41/87 (47%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + + ++I + LT RE + L G G ++ EIA++L +S HT Sbjct: 134 DLWMSRNLMTRLIDFYRRQQLNAYRPVCGLTHRELEIIGLLGTGASNTEIADQLFVSEHT 193 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRF 231 V ++L + K+ NRIQA+ A + Sbjct: 194 VKSHLYNIFRKIKVHNRIQAMNWARQN 220 >gi|329934362|ref|ZP_08284441.1| two-component response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329305958|gb|EGG49813.1| two-component response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 221 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 136 SEFLMLANEVII--EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + A + ++ A A E A LT RE +L +G + E Sbjct: 117 GIRTVAAGDALLSPAATRALITRFLATPEAEAVTGPDAGVLTAREREVTELVAEGKSDAE 176 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IAE+L LS TV ++ A KLDA +R Q +A A R G Sbjct: 177 IAEQLFLSPLTVRTHVQRAKTKLDARSRAQLVAIAYRSGL 216 >gi|302875540|ref|YP_003844173.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307690067|ref|ZP_07632513.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302578397|gb|ADL52409.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 220 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE +L G ++++I L L+ TV Y+ KL+ +R + + G Sbjct: 159 SLTPREIDVAKLVAQGKSNKDICRSLFLTEGTVKNYVTRILGKLELNSRTELAVFINQAG 218 Query: 233 Y 233 Sbjct: 219 I 219 >gi|111222400|ref|YP_713194.1| putative sensory transduction protein [Frankia alni ACN14a] gi|111149932|emb|CAJ61626.1| Hypothetical sensory transduction protein [Frankia alni ACN14a] Length = 232 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 35/88 (39%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + D LT+RE L G+++ EIA L LS TV Sbjct: 132 RRLLDTFAHRLPDPDSPRAPADPRLARLTDRELVVLGEVAAGHSNAEIAAHLVLSEATVK 191 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++G KL+ +R+QA+ A G + Sbjct: 192 THVGRILAKLELRDRVQAVVFAYETGLV 219 >gi|308175685|ref|YP_003922390.1| two-component response regulator DesR [Bacillus amyloliquefaciens DSM 7] gi|307608549|emb|CBI44920.1| two-component response regulator DesR [Bacillus amyloliquefaciens DSM 7] gi|328555666|gb|AEB26158.1| two-component response regulator DesR [Bacillus amyloliquefaciens TA208] gi|328914044|gb|AEB65640.1| two-component response regulator DesR [Bacillus amyloliquefaciens LL3] Length = 199 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LTERE + L+L DG ++EIA L + TV Y+ KL+ NR Sbjct: 126 ELMEDIYGEENPLTEREKAVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|258650793|ref|YP_003199949.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554018|gb|ACV76960.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 215 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 ++ + + +I + LT RE L G Sbjct: 111 PALLTQAIHAAADGDALIAPSVTVRLLAAFAQAPTSPPRQPLEPLTAREEEVLVTVAQGR 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+ EIA +L ++ TV A++ S KL A NR++ A G Sbjct: 171 TNSEIASQLFITSSTVKAHVASLMRKLGARNRVEVAMWAHETG 213 >gi|229076566|ref|ZP_04209526.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|229099785|ref|ZP_04230710.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229105944|ref|ZP_04236568.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229118847|ref|ZP_04248196.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228664648|gb|EEL20141.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228677518|gb|EEL31771.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228683674|gb|EEL37627.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228706599|gb|EEL58812.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|167753189|ref|ZP_02425316.1| hypothetical protein ALIPUT_01460 [Alistipes putredinis DSM 17216] gi|167659503|gb|EDS03633.1| hypothetical protein ALIPUT_01460 [Alistipes putredinis DSM 17216] Length = 203 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 1/157 (0%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 I + ++ Q+ +R L + + G+ + + Sbjct: 37 AVFDSFTEFIASGPERYFHYFAAMQVFMRHRTFFLENSHKTILLGKGYSAQFARMRQIDI 96 Query: 139 LMLANEVIIEA-HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 ++ + D + + AA L+ RET L L G +++IA++ Sbjct: 97 FGGEERLVHDLLCLRSEAPRPDHALPRQNGAPAANLLSVRETEVLTLIAQGLLNKQIADR 156 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + + TV ++ + KL + + A+ GY+ Sbjct: 157 LQIGLTTVISHRRNIMQKLGVQSVAALVICAVSMGYV 193 >gi|29827472|ref|NP_822106.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29604571|dbj|BAC68641.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 235 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195 ++A + A ++I +F+ + R L TERE L L G ++ EIA Sbjct: 128 RVIAAGEALLAPAVTRRLIAEFVHRPEPSRPLRRTLDGVTEREREVLTLIACGLSNTEIA 187 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+L L + TV ++ KL +R Q + A G + Sbjct: 188 ERLYLGIATVKTHVSHLLTKLATRDRAQLVIVAYESGLV 226 >gi|304413627|ref|ZP_07395071.1| DNA-binding HTH domain-containing protein invovled in quorum sensing [Candidatus Regiella insecticola LSR1] gi|304283718|gb|EFL92112.1| DNA-binding HTH domain-containing protein invovled in quorum sensing [Candidatus Regiella insecticola LSR1] Length = 252 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 55/210 (26%), Gaps = 27/210 (12%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS------------IQEETVI 98 + + N D ++ + D + + + W I Sbjct: 41 MRVISNRP-DWFEVYVRDRYQHIDPVIITALNRITSFPWDENIMINSDLKLPKIFNIVST 99 Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF---------LMLANEVIIEA 149 + +G F + + + + + + + Sbjct: 100 NLQLIEVFSIAKKYNIISGYTFILHDCNNNLAVLSILMDDQTGNMLKEKIEKNKDKLQML 159 Query: 150 HGACYQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + ++ + K S + RE L G T EIA G+ + T Sbjct: 160 LLNTHDILISLYKETHGAVCKNSESKKEKFSSRENEVLYWFSMGKTYSEIAIIFGIKLGT 219 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++G+ KL +N AI I Sbjct: 220 VKFHMGNIVKKLGVLNAKHAIRLGTESQLI 249 >gi|229521390|ref|ZP_04410809.1| DNA-binding response regulator LuxR family [Vibrio cholerae TM 11079-80] gi|229341488|gb|EEO06491.1| DNA-binding response regulator LuxR family [Vibrio cholerae TM 11079-80] Length = 216 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|228903831|ref|ZP_04067946.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228855740|gb|EEN00285.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NR Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176 Query: 222 IQAIAKAIRFGYI 234 I+AI A G+I Sbjct: 177 IEAITIAEEKGWI 189 >gi|239628083|ref|ZP_04671114.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518229|gb|EEQ58095.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 268 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 14/162 (8%) Query: 77 LFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + PII+ + + + R + + + + G + Sbjct: 85 VAWIFNTDQPIIYSDSDIVSNPVRENSLIYKRWMEPMGVYYSMGSTIVEHQIMFGSITLF 144 Query: 136 SEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCL 182 I+ H + + L K ++ LTERE + Sbjct: 145 RSRDTSDFGEREIEILKILNRHLSASFSMRFPNGLKKNDKETDKSRMKRYGLTEREEEIM 204 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L G ++++I EKL +S +TV ++ + KLD VNR Q Sbjct: 205 ELIISGISNQQIGEKLFISENTVKKHINNLYRKLDVVNRSQL 246 >gi|71737969|ref|YP_274134.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484378|ref|ZP_05638419.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627275|ref|ZP_06460229.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650435|ref|ZP_06481778.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298486449|ref|ZP_07004509.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71558522|gb|AAZ37733.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|298158926|gb|EFH99986.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324828|gb|EFW80900.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329194|gb|EFW85191.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330869470|gb|EGH04179.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330989303|gb|EGH87406.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013208|gb|EGH93264.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 42/95 (44%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E ++ +LT RE L L G+++ EI EKLG Sbjct: 120 RVARGEEALNSTVSARLLRRMTERNTSGAALPESLTPRERQVLGLVAGGFSNREIGEKLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|326797312|ref|YP_004315132.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548076|gb|ADZ93296.1| transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 254 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 37/74 (50%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + + +K SS LT RE L G T+ EI+ LG+S +TV ++ S Sbjct: 178 HSACSAASRIQRKSSSPINVLTSREREVLNWISSGKTNGEISMILGISPNTVKNHVASIL 237 Query: 214 VKLDAVNRIQAIAK 227 KL+A NR+ A A Sbjct: 238 GKLNAPNRLAATAL 251 >gi|269795278|ref|YP_003314733.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097463|gb|ACZ21899.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 216 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%) Query: 147 IEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLG 199 + + + + + + +LT RE + ++ A G + +I+ +L Sbjct: 122 VMLSQTATRAVVQHVARAPRPAEPDPVLAQQVASLTPRERTIVKQAAQGLDNLQISRQLH 181 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S HTV +LG A KLD +R Q + A R G + Sbjct: 182 ISPHTVKTHLGHAMAKLDVRDRTQMVVVAFRAGLV 216 >gi|229051023|ref|ZP_04194571.1| Two-component response regulator [Bacillus cereus AH676] gi|229147892|ref|ZP_04276233.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228635542|gb|EEK92031.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228722332|gb|EEL73729.1| Two-component response regulator [Bacillus cereus AH676] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|163839051|ref|YP_001623456.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952527|gb|ABY22042.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 158 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-----------ACYQVITDFLELFKKRSSAAR 172 L G+++ ++ + +I A G Q+++ + Sbjct: 37 LRAGAAGFLLKSASAEEIVQAIITVATGGSVLAPEVTKTVIEQMLSASSRAEIRTPPGLA 96 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G G+T+++IA +LG++ TV ++ KLD V+R+QA + Sbjct: 97 ELTARELEVLRAVGAGWTNQQIANRLGIAETTVKTHVSRIFNKLDLVSRVQAAIFCVEHQ 156 Query: 233 Y 233 Sbjct: 157 L 157 >gi|296271341|ref|YP_003653973.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094128|gb|ADG90080.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 228 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 38/75 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + LT RE ++L +GY+S+EIAE L +SV TV+ + + KL Sbjct: 152 LARARRGERVPDSVLTPREEEIVKLIAEGYSSKEIAETLQISVKTVDRHRANVLAKLGMR 211 Query: 220 NRIQAIAKAIRFGYI 234 +R++ AIR G + Sbjct: 212 DRLELTRYAIRAGLV 226 >gi|226305629|ref|YP_002765589.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184746|dbj|BAH32850.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 226 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 38/88 (43%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A Q + LE S LT RE L+ G ++ EIA K +S TV Sbjct: 129 ARATRRLLQHVGPLLEGSAPESQLPEELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVK 188 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++G K + +R+QA+ A + G + Sbjct: 189 THVGRVLSKTHSRDRVQAVVFAFQIGLV 216 >gi|310640662|ref|YP_003945420.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309245612|gb|ADO55179.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 214 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + +LT +E L G G + EIA +L +S TV ++ KL +R Sbjct: 133 LREDAGNLTDDLTPKEKEVLVELGQGACNREIASRLFISEFTVKKHVSQILAKLRLADRT 192 Query: 223 QAIAKAIRFGY 233 QA A G Sbjct: 193 QAALYANAIGL 203 >gi|292558970|gb|ADE31971.1| Response regulator [Streptococcus suis GZ1] Length = 190 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LT E+ L+L +G +++EIA +L LS TV Y+ S KL A NR Sbjct: 117 ELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENR 176 Query: 222 IQAIAKAIRFGYI 234 A+ A G++ Sbjct: 177 TAAVKVAQEKGWL 189 >gi|284046997|ref|YP_003397337.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951218|gb|ADB53962.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 223 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 17/160 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + G A +A V ++ + ++ Sbjct: 57 LDVHLPDGGGLAVLEAFRGIAGAPAFLALSVSDAAEDVVPMVRAGARGYVTKTIDTPALL 116 Query: 148 EA-------------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 +A A + + ++ LT RE L GY + I Sbjct: 117 DAIVRVRQGEPYFSPRLAAFVLQAFSAPAEEQADDELDQLTPREREVLHHLARGYAYKRI 176 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +LG+S TV ++GS KL +R + A G + Sbjct: 177 AARLGISPRTVETHVGSVLRKLQLSSRHELSHWAASRGLV 216 >gi|271963063|ref|YP_003337259.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506238|gb|ACZ84516.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 215 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAG 186 + + ++ + ++ G ++I ++ K + LT+RE L L G Sbjct: 104 EPAELIQAVRVVADGDALLSP-GVTRRLIAEYASRAKPPHPSQDLGMLTDREREVLSLVG 162 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA KL +S T ++ +KL A +R Q + A G + Sbjct: 163 TGMTNDEIAGKLFMSPATAKTHVSRTMMKLHARDRAQLVVIAYESGLV 210 >gi|228955601|ref|ZP_04117601.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229193605|ref|ZP_04320549.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228589910|gb|EEK47785.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228804077|gb|EEM50696.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|297560931|ref|YP_003679905.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845379|gb|ADH67399.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 217 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 4/119 (3%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 +G V + L + + A + E R LT Sbjct: 102 SGFLIKDSDPQEMLAAVRAAARGEALLSPSVTRRVVAAFV----SREPGGGRVPRLEVLT 157 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE + L G+G ++EEIA +L +S T ++ A VKL A +R Q + A R G + Sbjct: 158 EREREVVGLVGEGLSNEEIAARLVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGLV 216 >gi|317404098|gb|EFV84550.1| DNA-binding response regulator [Achromobacter xylosoxidans C54] Length = 218 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 8/137 (5%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII---EAHGACYQ 155 +L+ +L A + + + + I+ +A Sbjct: 79 ELTAQLHERYPQIAVLVLSMHDNAEYMVQAVRAGARGYLLKDEPAQEILAAIDAVMTGRT 138 Query: 156 VITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + L + S+ A LT+RE L+ G+ +++IA+ LGLSV TV + + Sbjct: 139 YFSAAVSLRLSQASAPATLLTQRERDVLRHIASGHANKQIAQALGLSVRTVETHRLNIKR 198 Query: 215 KLDAVNRIQAIAKAIRF 231 KL + + I A+ Sbjct: 199 KLGIDGQAELIKYAVEN 215 >gi|311894021|dbj|BAJ26429.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 41/134 (30%), Gaps = 4/134 (2%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + H + V L Sbjct: 84 FDLDEYAHAALRAGASGFLLKDAHPEELLAGVRAVAGGDAVVAPAITRRLLDAYAHHLPA 143 Query: 164 FK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LT RE L G+T+ EIA +L LS TV ++G K+ A Sbjct: 144 RPPGPVDDDPRLAALTGREREILLAVARGWTNGEIAARLVLSESTVKTHVGRVLAKIGAR 203 Query: 220 NRIQAIAKAIRFGY 233 +R+QA+ A G Sbjct: 204 DRVQAVILAYDLGL 217 >gi|261210994|ref|ZP_05925284.1| DNA-binding response regulator LuxR family [Vibrio sp. RC341] gi|260839969|gb|EEX66569.1| DNA-binding response regulator LuxR family [Vibrio sp. RC341] Length = 212 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G +S++IA L +S TV + + KLD + + A++ G Sbjct: 150 PLSRREEAILRLVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 209 Query: 233 YI 234 + Sbjct: 210 LL 211 >gi|257057781|ref|YP_003135613.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587653|gb|ACU98786.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 226 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERETS 180 L GYV+ +E +A V G + L ++ +S +LT RE Sbjct: 109 LSAGAAGYVLKDAEPEEVATAVRAAVKGEVHLDAAVARLLARRMASPQVGVTSLTARERD 168 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G G ++ EIA++L +S T ++ + KL +R QA AIR G + Sbjct: 169 ILVLVGQGLSNREIADRLVISERTARTHVSNVLSKLQLSSRTQAALLAIREGLV 222 >gi|228968483|ref|ZP_04129471.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791189|gb|EEM38803.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NR Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176 Query: 222 IQAIAKAIRFGYI 234 I+AI A G+I Sbjct: 177 IEAITIAEEKGWI 189 >gi|284032715|ref|YP_003382646.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283812008|gb|ADB33847.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 217 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 11/136 (8%) Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHKNGYVI----FTSEFLMLANEVIIEAHGACYQVIT 158 + AG + F ++ + ++ + Sbjct: 85 FDLDEYAFAGLRAGASGFLLKDASADEVLHAIRAVHAGDSVLAPSTTRRMLD------HL 138 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + S + LT RE L G+++ E A++L LS TV ++ KL+ Sbjct: 139 PTARAGHEASPLLQRLTARERDVLLEIAHGHSNAETAQRLFLSEATVKTHVAHLLAKLEV 198 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A G + Sbjct: 199 RDRVQAVIFAYENGLV 214 >gi|148981530|ref|ZP_01816447.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] gi|145960831|gb|EDK26164.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] Length = 212 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L+ RE + L+L G +S+E+A+ L +S TV + + KLD + + Sbjct: 145 PSVKNPLSRREEAVLKLVAKGESSKEVAKALNISYRTVETHRQNIKHKLDIHSTAELAKY 204 Query: 228 AIRFGYI 234 A+ G + Sbjct: 205 AVNCGLV 211 >gi|72161171|ref|YP_288828.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71914903|gb|AAZ54805.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 221 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + L G+G ++EEIA +L LS TV ++ A KL +R Q + A G Sbjct: 155 LTDREREVVALVGEGLSNEEIAARLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|54027465|ref|YP_121707.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018973|dbj|BAD60343.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 151 GACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 G V+ ++ + + LTERET L++ G ++++IA +LGLS TV Sbjct: 135 GLAGLVLGEYRRMASAPARPDEPHRPALTERETEVLRMVAKGLSAKQIAARLGLSHRTVE 194 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL NR++ AI G Sbjct: 195 NHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|260768300|ref|ZP_05877234.1| transcriptional regulator [Vibrio furnissii CIP 102972] gi|260616330|gb|EEX41515.1| transcriptional regulator [Vibrio furnissii CIP 102972] Length = 212 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G++S++IA L +S TV + + KLD + + A + G Sbjct: 150 PLSRREEAVLKLVAQGHSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAHYASQRG 209 Query: 233 YI 234 + Sbjct: 210 LL 211 >gi|254000165|ref|YP_003052228.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986844|gb|ACT51701.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 232 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 36/73 (49%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LE +++ LT+RE LQ DG ++ IA KLG+S TV ++ KL Sbjct: 158 QALLEPRTRKADDDVALTDREQEILQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLK 217 Query: 218 AVNRIQAIAKAIR 230 +R++A A R Sbjct: 218 LTSRLEAAVWAHR 230 >gi|228949073|ref|ZP_04111345.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810646|gb|EEM56995.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 189 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|222081319|ref|YP_002540682.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725998|gb|ACM29087.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 275 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +E +AH A V T + + RNL+ RE S L+L Sbjct: 169 GDAIICPDAGSDVFDVHE--HDAHMAAAPVQTT------RIVNGVRNLSPREKSILKLVM 220 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 G ++++IA +L ++ TV ++ + K+D NR QA A+ Sbjct: 221 GGESNKQIARRLEITESTVKVHIKTILRKIDVRNRTQAAIWAM 263 >gi|149914980|ref|ZP_01903509.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp. AzwK-3b] gi|149811168|gb|EDM71005.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp. AzwK-3b] Length = 219 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + LT RE + L G +++++A L +SV TV + + KL + Sbjct: 139 SLEPYQRPGREQLTNREQTILLQLAQGKSNKDVAHTLDISVRTVETHRKNIKRKLGISST 198 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 199 AGLTRYALEHGVL 211 >gi|54026217|ref|YP_120459.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017725|dbj|BAD59095.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 230 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 18/140 (12%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 ++G L L A VR ++ +L+ Sbjct: 102 ALRAGAAGFLLKDSPAEDLIRA-----VRTVAGGGAWLDPAVTGRVLS------------ 144 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +R LT RE L+L G G + EIA +LG+S TV +++G Sbjct: 145 -AYRTVRPAPARRDDRLAELTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFG 203 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD +R AI A G + Sbjct: 204 KLDLRDRAAAIVFAFDHGVV 223 >gi|297202549|ref|ZP_06919946.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297148137|gb|EFH28852.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 910 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 9/166 (5%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF-----AGIAFPVRLGFHKNGY 131 L S P W R+ L G P R + Sbjct: 733 LLRAESADTPDHWCEAITAVEPLGRPFDLARVRHRLAEALLSVPGGAEQPERDRATELLR 792 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLE----LFKKRSSAARNLTERETSCLQLAGD 187 + + + A + + L + + LT RE L+L Sbjct: 793 LAHAAAEHLGARPLADAVTLLAQRARLALTAVVPVLDRSDPLRSLGLTGRERDVLRLVTL 852 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G T+ +IAE+L +S T + ++ + KL R +A A A R G Sbjct: 853 GRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRLGL 898 >gi|256376928|ref|YP_003100588.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921231|gb|ACU36742.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G +L V E G + T + A L+ RE L+L DG Sbjct: 112 EGVRTVARGEALLDPSVTRELIG---RYATRVRPREEPVHGALAGLSPRELEVLRLVADG 168 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA +L LS TV Y+ KLD +R+QA+ A R G + Sbjct: 169 RSNSEIAVELVLSPETVKTYVSRLLAKLDLRDRVQAVVPAHRTGLV 214 >gi|330969335|gb|EGH69401.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 909 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (5%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLEL 163 LL + P G + E +E +++ ++ Sbjct: 778 RDEARALLLR---SLPAASGGALMPFKALLGEHPEWLHEQLVQLPPCRVQAALLEKLPAC 834 Query: 164 FKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 AA L+ RE LQL G +++EI+E+L +S+HTV + KL Sbjct: 835 CTPSPEAAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVER 894 Query: 221 RIQAIAKAIRFGYI 234 R QA+A+A G + Sbjct: 895 RTQAVARAKTLGLL 908 >gi|254390623|ref|ZP_05005837.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812218|ref|ZP_06770861.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440627|ref|ZP_08215361.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704324|gb|EDY50136.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324817|gb|EFG06460.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 228 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + ++R++A LT RE L L G +++EI E+L +S TV Sbjct: 136 LIARFLAQGGDGADEQRAAAYGERLNALTGREREVLVLVAGGLSNDEIGERLDVSPLTVK 195 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL A +R Q + A G + Sbjct: 196 THVNRAMAKLGARDRAQLVVTAYESGLV 223 >gi|183983931|ref|YP_001852222.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183177257|gb|ACC42367.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length = 218 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 15/220 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + FA+ + +R+ I + +D ++ Sbjct: 12 VDDHPIWRDAVARDLSDDGFAVVATADGVATAQRRAAIVKPDVVVMDMRLADGDGVQA-- 69 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + + + ++ G G V Sbjct: 70 --TTEVLKVSPA----TRVLVLSASDEREDVLEAVKAGA---TGYLVKSASKAELADAVR 120 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 T+ + + Y+ I + + R +LTERET L+ G ++++ Sbjct: 121 ATAAGRAVFTPSLAGLVLGEYRRIAQTADSSQDRP----SLTERETEILRYVAKGLSAKQ 176 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IAEKL LS TV ++ + KL NR++ AI G Sbjct: 177 IAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216 >gi|116249841|ref|YP_765679.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254489|emb|CAK05563.1| putative GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 260 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ L+L + SA LT RE L L G ++ IA+KL LS +TV ++ + Sbjct: 173 AARSNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYK 229 Query: 215 KLDAVNRIQAIAK 227 K++ NR +A ++ Sbjct: 230 KMNVRNRTEAASR 242 >gi|17987865|ref|NP_540499.1| transcriptional regulatory protein DEGU [Brucella melitensis bv. 1 str. 16M] gi|23501247|ref|NP_697374.1| LuxR family DNA-binding response regulator [Brucella suis 1330] gi|148559651|ref|YP_001258379.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC 25840] gi|161618323|ref|YP_001592210.1| two component LuxR family transcriptional regulator [Brucella canis ATCC 23365] gi|163842630|ref|YP_001627034.1| two component LuxR family transcriptional regulator [Brucella suis ATCC 23445] gi|225626863|ref|ZP_03784902.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo] gi|225851885|ref|YP_002732118.1| LuxR family two component transcriptional regulator [Brucella melitensis ATCC 23457] gi|254701158|ref|ZP_05162986.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 5 str. 513] gi|254703704|ref|ZP_05165532.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 3 str. 686] gi|254707920|ref|ZP_05169748.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M163/99/10] gi|254709500|ref|ZP_05171311.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis B2/94] gi|254713082|ref|ZP_05174893.1| two component transcriptional regulator, LuxR family protein [Brucella ceti M644/93/1] gi|254716565|ref|ZP_05178376.1| two component transcriptional regulator, LuxR family protein [Brucella ceti M13/05/1] gi|256030994|ref|ZP_05444608.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M292/94/1] gi|256044064|ref|ZP_05446975.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060484|ref|ZP_05450655.1| two component transcriptional regulator, LuxR family protein [Brucella neotomae 5K33] gi|256112861|ref|ZP_05453782.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 3 str. Ether] gi|256159043|ref|ZP_05456876.1| two component transcriptional regulator, LuxR family protein [Brucella ceti M490/95/1] gi|256254397|ref|ZP_05459933.1| two component transcriptional regulator, LuxR family protein [Brucella ceti B1/94] gi|256264603|ref|ZP_05467135.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|256368799|ref|YP_003106305.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260168126|ref|ZP_05754937.1| DNA-binding response regulator, LuxR family protein [Brucella sp. F5/99] gi|260563426|ref|ZP_05833912.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567044|ref|ZP_05837514.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|261218363|ref|ZP_05932644.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261221562|ref|ZP_05935843.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94] gi|261315409|ref|ZP_05954606.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261317025|ref|ZP_05956222.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261320788|ref|ZP_05959985.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324478|ref|ZP_05963675.1| two component LuxR family transcriptional regulator [Brucella neotomae 5K33] gi|261751695|ref|ZP_05995404.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261754348|ref|ZP_05998057.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261757583|ref|ZP_06001292.1| bacterial regulatory protein [Brucella sp. F5/99] gi|265988062|ref|ZP_06100619.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990479|ref|ZP_06103036.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994307|ref|ZP_06106864.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265997525|ref|ZP_06110082.1| two component LuxR family transcriptional regulator [Brucella ceti M490/95/1] gi|294851727|ref|ZP_06792400.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|306842393|ref|ZP_07475048.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2] gi|306844978|ref|ZP_07477559.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1] gi|17983597|gb|AAL52763.1| two-component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23347130|gb|AAN29289.1| DNA-binding response regulator, LuxR family [Brucella suis 1330] gi|148370908|gb|ABQ60887.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC 25840] gi|161335134|gb|ABX61439.1| two component transcriptional regulator, LuxR family [Brucella canis ATCC 23365] gi|163673353|gb|ABY37464.1| two component transcriptional regulator, LuxR family [Brucella suis ATCC 23445] gi|225618520|gb|EEH15563.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo] gi|225640250|gb|ACO00164.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis ATCC 23457] gi|255998957|gb|ACU47356.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260153442|gb|EEW88534.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156562|gb|EEW91642.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260920146|gb|EEX86799.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94] gi|260923452|gb|EEX90020.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293478|gb|EEX96974.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261296248|gb|EEX99744.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300458|gb|EEY03955.1| two component LuxR family transcriptional regulator [Brucella neotomae 5K33] gi|261304435|gb|EEY07932.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737567|gb|EEY25563.1| bacterial regulatory protein [Brucella sp. F5/99] gi|261741448|gb|EEY29374.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261744101|gb|EEY32027.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262551993|gb|EEZ07983.1| two component LuxR family transcriptional regulator [Brucella ceti M490/95/1] gi|262765420|gb|EEZ11209.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263001263|gb|EEZ13838.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263094966|gb|EEZ18674.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264660259|gb|EEZ30520.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294820316|gb|EFG37315.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|306274610|gb|EFM56399.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1] gi|306287481|gb|EFM58951.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2] gi|326408384|gb|ADZ65449.1| LuxR family two component transcriptional regulator [Brucella melitensis M28] gi|326538098|gb|ADZ86313.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis M5-90] Length = 213 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V LE +KRS L+ RE L L +G ++ EIA +LG+S TV + Sbjct: 129 YFSSGVSEALLESGEKRS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL + AI Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208 >gi|331696783|ref|YP_004333022.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951472|gb|AEA25169.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 892 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 7/143 (4%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + E + L P L F + ++ + + G Sbjct: 750 LTAELRRPDDADRILEEALDLALPGHYRQP-FLQFGEARTLLEAHRGCPAHRRFVADLLG 808 Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 D + A L++RE L T+ EI ++ +SV+TV +L S Sbjct: 809 ------ADDAPVTGAAGPGAEVLSDREVEVLGHLAAMLTAAEIGAEMFVSVNTVKTHLKS 862 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QA+A+ + G + Sbjct: 863 IYRKLGVSSRRQAVARGVELGIV 885 >gi|255008092|ref|ZP_05280218.1| putative transcriptional regulatory protein [Bacteroides fragilis 3_1_12] gi|313145809|ref|ZP_07808002.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313134576|gb|EFR51936.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 225 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E L+ G T++EIA + LS HT+N++ + KL N +AI A+R G Sbjct: 158 LTPTEKIILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEAIKYAMRAGI 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|284029334|ref|YP_003379265.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808627|gb|ADB30466.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 228 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE + L G +++ IAE L +S T ++ A KL +R Q + A+R Sbjct: 163 DSLTSREREVVTLVARGLSNDVIAEHLFISPMTAKTHVNRAMSKLHVSDRAQLVVAALRA 222 Query: 232 GYI 234 G + Sbjct: 223 GLL 225 >gi|260906661|ref|ZP_05914983.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 216 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 155 QVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +VI + + + AA LT RE L L G ++ EIA +L + TV ++ + Sbjct: 132 RVIERSVRSPESTTPAAPELELLTGRELEVLHLVAGGLSNSEIAGRLFVGEATVKTHVSN 191 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLD +RI + A + G + Sbjct: 192 LLTKLDIRDRIHVVIFAYQNGVV 214 >gi|259419008|ref|ZP_05742925.1| two component transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259345230|gb|EEW57084.1| two component transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 214 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + ++ LT RE + L G +++E+A L +SV TV + + KL + Sbjct: 135 SLSPQSHTSREALTGREQTILLELAQGKSNKEVALTLDISVRTVETHRKNIKRKLGISST 194 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 195 AGLTRYALEHGVL 207 >gi|229033988|ref|ZP_04188939.1| Two-component response regulator [Bacillus cereus AH1271] gi|228728327|gb|EEL79352.1| Two-component response regulator [Bacillus cereus AH1271] Length = 189 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 226 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EI ++L LS TV Y+ S K + NR + + A+ Sbjct: 164 ELTAREKQVLELLAQGLSNVEIGQQLHLSPRTVEKYVSSLLRKTETNNRAELVRFALEHH 223 Query: 233 YI 234 + Sbjct: 224 LV 225 >gi|300728575|ref|ZP_07061933.1| transcriptional regulator [Prevotella bryantii B14] gi|299774144|gb|EFI70778.1| transcriptional regulator [Prevotella bryantii B14] Length = 213 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + + C++ T+ L + + A NLT E L+ G T++EIA + Sbjct: 113 EAIQDAVQKRRYICHRA-TEILIDSQLKEEPATNLTSTEIEILRSIAQGKTTKEIAAERY 171 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+HT+N + + KL +A+ A R G + Sbjct: 172 SSIHTINTHRKNIFKKLKVNTAHEAVKYAFRAGLV 206 >gi|296394121|ref|YP_003659005.1| LuxR family two component transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181268|gb|ADG98174.1| two component transcriptional regulator, LuxR family [Segniliparus rotundus DSM 44985] Length = 213 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + + A +++ + + L K LTE+E L L G+G Sbjct: 105 GMDLVAAVRAVGAGRSLLD--NRAAEALIRQLRAGKPEPGPLAGLTEQERVLLDLIGEGL 162 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+ +IA+++ L+ TV Y+ KL R QA A+ G Sbjct: 163 TNRQIAQRMFLAEKTVRNYVSRLLGKLGVERRTQAAVIAVSGG 205 >gi|294636980|ref|ZP_06715302.1| putative csgAB operon transcriptional regulatory protein [Edwardsiella tarda ATCC 23685] gi|291089808|gb|EFE22369.1| putative csgAB operon transcriptional regulatory protein [Edwardsiella tarda ATCC 23685] Length = 214 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 10/150 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 + E + L I V + + ++ Sbjct: 61 FDASLLDAEQAQ--RDFWLRTIFHHSLTSRIILINVHRQDLALRWYRHANIIAAFPAQMH 118 Query: 147 IE--AHGACYQVITDFLELFK------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + H ++ + + LT RE ++ G ++++I++ L Sbjct: 119 LRILLHRLRALLVLPMQSSEPVGNRVLRARRPSLPLTLRELEVMKAMQQGASNQDISQML 178 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +S +TV ++ + K+ NR QA+ A Sbjct: 179 YISENTVRTHIYNIFKKIAVKNRTQAVKWA 208 >gi|291457263|ref|ZP_06596653.1| two-component system response regulator [Bifidobacterium breve DSM 20213] gi|291381098|gb|EFE88616.1| two-component system response regulator [Bifidobacterium breve DSM 20213] Length = 227 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + A Sbjct: 165 DRLSAREQEVMRLIARGYTYKEVAVELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 224 Query: 232 GYI 234 + Sbjct: 225 RIV 227 >gi|328543741|ref|YP_004303850.1| Two component transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326413485|gb|ADZ70548.1| Two component transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 232 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDF-LELFKKRSSAARNLT 175 +R+G + A ++ H ++ + L + A LT Sbjct: 112 IRVGAMGYILKDAFPNDIAAAVHDLVRGHSPISASIARYIVRNAQLPAGDEPCEPAIRLT 171 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L GY EIA +LG+S TV Y+ + KL NR +A+ +A++ G I Sbjct: 172 PREADILWGIAKGYRYAEIAAQLGISPQTVTGYIKTIYRKLHVTNRGEAVFEAVQQGLI 230 >gi|302545854|ref|ZP_07298196.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302463472|gb|EFL26565.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 39/97 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + ++ + + +A LT RE + LA G ++ +IA+ Sbjct: 118 RVAARGDALLAPSITRKLIHRYVTQPLPTTGAALEELTSREREAVALAARGLSNSQIADH 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +S T ++ A KL A +R Q + A G + Sbjct: 178 MVISPMTAKTHINRAMTKLHARDRAQLVVFAYESGLV 214 >gi|223937115|ref|ZP_03629022.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894137|gb|EEF60591.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +L+ RE + L G T + IA LG+S+ T+ +L KL +R +A+AK Sbjct: 144 SPTEAHLSPREQNVLDCLAKGMTYKAIACDLGISIETIRTHLKRVYQKLHVQSRTEAVAK 203 Query: 228 AIRF 231 +R Sbjct: 204 YMRR 207 >gi|54022870|ref|YP_117112.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014378|dbj|BAD55748.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 211 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 36/123 (29%), Gaps = 3/123 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + +G + + + A Sbjct: 91 RAGARGYVTKTISGAELADGIRRVAGGDAVFSPRL---AGFVLDSFTGRSPVPEPPLDPE 147 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE L +SV TV + + K NR A R Sbjct: 148 LDSLTPRELEVLRLLARGYTYREIAETLFISVKTVETHASNVLRKTQQSNRNALTRWAHR 207 Query: 231 FGY 233 Sbjct: 208 RRI 210 >gi|28899484|ref|NP_799089.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308094736|ref|ZP_05891637.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308095423|ref|ZP_05905792.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308125607|ref|ZP_05776200.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|28807720|dbj|BAC60973.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|308087209|gb|EFO36904.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308093073|gb|EFO42768.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308111203|gb|EFO48743.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] Length = 214 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+ Sbjct: 143 INTHTAPATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202 Query: 223 QAIAKA 228 QAIA A Sbjct: 203 QAIAWA 208 >gi|262401518|ref|ZP_06078085.1| transcriptional regulator LuxR family [Vibrio sp. RC586] gi|262352233|gb|EEZ01362.1| transcriptional regulator LuxR family [Vibrio sp. RC586] Length = 214 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 RL L G + G++ ++ + + H + + Sbjct: 89 RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSNQLLHYYRYAFQTH 147 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 Query: 227 K 227 Sbjct: 208 W 208 >gi|220925456|ref|YP_002500758.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950063|gb|ACL60455.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 238 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + A LTERE L G +++ IA +L ++ TV ++ S K NR Sbjct: 158 AAARGLGANETLTEREVEILAYLAAGLSNKLIARRLSIAEATVKIHVKSILRKTGLQNRT 217 Query: 223 QAIAKAIRFGY 233 QA R G Sbjct: 218 QAAIWTHRHGI 228 >gi|218663384|ref|ZP_03519314.1| probable two-component response regulator protein [Rhizobium etli IE4771] Length = 178 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ + L +S +LT RE + L G +++ I +L L TV ++ Sbjct: 101 MSTKVMENSLH---DSASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 157 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL NR +A + Sbjct: 158 ILSKLGVSNRTEAALQWRER 177 >gi|254381656|ref|ZP_04997020.1| two component system response regulator [Streptomyces sp. Mg1] gi|194340565|gb|EDX21531.1| two component system response regulator [Streptomyces sp. Mg1] Length = 221 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 17/165 (10%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTS 136 P+ + + + + RL A + LG GY+ + Sbjct: 56 PVDVVLMDLRMPVMDGTETTRRLAEEHPEVAVVVLTTFADDESILGALGAGARGYLTKNA 115 Query: 137 EFLMLANEVIIEAHGAC---YQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDG 188 +A + A G +V L +LT RE L L G G Sbjct: 116 GRQDIARAIRAAAAGQSVLDREVQDRLLVTVRTRAPAPARPLPEDLTPREREVLALIGQG 175 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + IA++L +S TV ++ + K +R A+ +AI G Sbjct: 176 LPNRAIAQRLFVSEATVKTHINNLFAKAGIRDRADAVRRAIAAGL 220 >gi|62289334|ref|YP_221127.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699262|ref|YP_413836.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|189023586|ref|YP_001934354.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|237814824|ref|ZP_04593822.1| LuxR family DNA-binding response regulator [Brucella abortus str. 2308 A] gi|254696773|ref|ZP_05158601.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 2 str. 86/8/59] gi|254729682|ref|ZP_05188260.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 4 str. 292] gi|260545913|ref|ZP_05821654.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260757346|ref|ZP_05869694.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761170|ref|ZP_05873513.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|62195466|gb|AAX73766.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82615363|emb|CAJ10326.1| Bacterial regulatory protein, LuxR family:Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189019158|gb|ACD71880.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|237789661|gb|EEP63871.1| LuxR family DNA-binding response regulator [Brucella abortus str. 2308 A] gi|260097320|gb|EEW81195.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260667664|gb|EEX54604.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671602|gb|EEX58423.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] Length = 213 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V LE +K+S L+ RE L L +G ++ EIA +LG+S TV + Sbjct: 129 YFSSGVSEALLESGEKKS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL + AI Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208 >gi|119358450|ref|YP_913094.1| two component LuxR family transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119355799|gb|ABL66670.1| two component transcriptional regulator, LuxR family [Chlorobium phaeobacteroides DSM 266] Length = 203 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G TS +IA +L +S TV + KL+ A G Sbjct: 142 QLTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQHIMEKLNIRTATGLAGYAREHG 201 Query: 233 YI 234 I Sbjct: 202 LI 203 >gi|319949743|ref|ZP_08023770.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319436589|gb|EFV91682.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 226 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 34/124 (27%), Gaps = 1/124 (0%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLELFKKRSS 169 + + + + + + Sbjct: 102 RAGARGYVTKTITGDDLADAVRRVADGDAVFSPRLAGFVLDAFARAAPGPEERGEPVHDP 161 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L+L GYT EIAE+L +SV TV + + K NR A Sbjct: 162 EVDSLTPREKEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNRHALTRWAQ 221 Query: 230 RFGY 233 Sbjct: 222 SRHL 225 >gi|312128575|ref|YP_003993449.1| LuxR family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311778594|gb|ADQ08080.1| transcriptional regulator, LuxR family [Caldicellulosiruptor hydrothermalis 108] Length = 68 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE ++L +G T++EIA L +S TV Y+ + +KL+ +R + IA Sbjct: 5 KLSYREREIVKLIAEGMTNKEIAVILNISEKTVKTYVKNIMLKLEVDSRYKIIAW 59 >gi|290510245|ref|ZP_06549615.1| monoamine regulon transcriptional regulator [Klebsiella sp. 1_1_55] gi|289776961|gb|EFD84959.1| monoamine regulon transcriptional regulator [Klebsiella sp. 1_1_55] Length = 227 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 12/220 (5%) Query: 10 KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K+S + R L I I + Y +N+ L + LHN ++ Sbjct: 6 KASRNDAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPESYILHNISDNTHQQYLE- 59 Query: 69 IETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D L HF+ + + + + + +R Sbjct: 60 NFQPLDPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERR 116 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + ++E A V + ++ LT +E + + + Sbjct: 117 IIAGISLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEDDDLPAILTAKEREIVGMVRE 175 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G +++ IA +L +S+ TV +L + K + VNR + +++ Sbjct: 176 GASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215 >gi|238060047|ref|ZP_04604756.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237881858|gb|EEP70686.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 264 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 33/83 (39%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 QV+T + LT RE L+ G T+ IA + GLS TV L Sbjct: 180 RVGPQVLTTLQRQPVELPPPFDRLTPRERDILRHLATGETNARIARRFGLSEKTVRNQLS 239 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL +R+QA A G Sbjct: 240 AVFAKLGVTDRVQAALLARDAGL 262 >gi|304437977|ref|ZP_07397921.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368931|gb|EFM22612.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 212 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 31/76 (40%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F + LT RE GYT EIAE+L LSV TV+ + KL Sbjct: 136 MFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAERLHLSVKTVDTHKKHIYEKLHC 195 Query: 219 VNRIQAIAKAIRFGYI 234 R + A+R G + Sbjct: 196 SRRSDLVTLALRNGLL 211 >gi|254884986|ref|ZP_05257696.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|319640388|ref|ZP_07995112.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|254837779|gb|EET18088.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|317387991|gb|EFV68846.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 256 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE L+L G+ S+EIA+KL +S+HTV+ + + KL N ++AI Sbjct: 191 PAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAIRLGQ 250 Query: 230 RFGYI 234 G + Sbjct: 251 ESGLL 255 >gi|116671544|ref|YP_832477.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116611653|gb|ABK04377.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 228 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 17/143 (11%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITDFL 161 L +A V VI ++ I +A V + L Sbjct: 86 AALLGTTRFLALSVSDAAEDVVSVIRAGARGYVTKSISGTEISDAVLRVAGGDAVFSPRL 145 Query: 162 E---LFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 L ++ A L+ RE ++L GY+ +E+A++L +S+ TV ++ + Sbjct: 146 AGFVLDAFGTAPADIAGDELDRLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSA 205 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R + A + Sbjct: 206 VLRKLQLSSRHELTKWAAERRLL 228 >gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 215 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E +Q G + EIA++L +S T+ +++ + K NR + AI Sbjct: 155 LTPTERKVVQFVARGMANREIAQQLNVSQRTIESHVSNMLGKTGLHNRTELARWAIEN 212 >gi|298249976|ref|ZP_06973780.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547980|gb|EFH81847.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%) Query: 151 GACYQVITDFLELFKKRSSAARN----------LTERETSCLQLAGDGYTSEEIAEKLGL 200 +++ L + + LTERE + L G S+EIA+ LG+ Sbjct: 131 LLQPEIMARILAQTHRSVPNSSPGAPSGNSTVELTERERAILIAVAHGERSKEIAQHLGV 190 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV A+L + KL+ +R A+A A+ G + Sbjct: 191 SERTVKAHLTNIYTKLNVDSRASAVASALERGLL 224 >gi|229164302|ref|ZP_04292233.1| Two-component response regulator [Bacillus cereus R309803] gi|228619145|gb|EEK76040.1| Two-component response regulator [Bacillus cereus R309803] Length = 189 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|218462212|ref|ZP_03502303.1| probable two-component response regulator protein [Rhizobium etli Kim 5] Length = 180 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ + L +S +LT RE + L G +++ I +L L TV ++ Sbjct: 103 MSTKVMENSLH---DSASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 159 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL NR +A + Sbjct: 160 ILSKLGVSNRTEAALQWRER 179 >gi|168700050|ref|ZP_02732327.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 219 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE +L G+ ++EIA +L LSV TV Y A KL +R + ++ A + G Sbjct: 155 ELSEREAEVARLTAAGHGNKEIAARLELSVKTVETYRARALEKLGLKSRAELVSYAFQQG 214 Query: 233 YI 234 ++ Sbjct: 215 WL 216 >gi|150003225|ref|YP_001297969.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|294776005|ref|ZP_06741501.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|149931649|gb|ABR38347.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|294450143|gb|EFG18647.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] Length = 256 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE L+L G+ S+EIA+KL +S+HTV+ + + KL N ++AI Sbjct: 191 PAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAIRLGQ 250 Query: 230 RFGYI 234 G + Sbjct: 251 ESGLL 255 >gi|134103787|ref|YP_001109448.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005755|ref|ZP_06563728.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916410|emb|CAM06523.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 35/75 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + A LT+RET L+ G T+ +IA KL +S TV ++ S KL Sbjct: 141 RRMAVTPDSGDRAPQLTDRETEVLRQVAKGLTARQIANKLVISHRTVENHVQSTLRKLQL 200 Query: 219 VNRIQAIAKAIRFGY 233 NR++ AI G Sbjct: 201 HNRVELARYAIEHGL 215 >gi|154251602|ref|YP_001412426.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] gi|154155552|gb|ABS62769.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] Length = 921 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++ EA ++ D S LT+RE L+L +G++++ +A++L LS Sbjct: 828 RLLSEAGEFAPALMPDAGHDENDDISPHLLEELTDREREILRLVSNGFSNKALADRLSLS 887 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +TV +L + KL NR+QA++ A FG I Sbjct: 888 TNTVKWHLRNIFEKLQIGNRMQAVSVARHFGLI 920 >gi|146306170|ref|YP_001186635.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145574371|gb|ABP83903.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 868 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 42/84 (50%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ L + S+ L+ RE + LQL G +++EIA++L +S+HTV + Sbjct: 782 QSLHQRLFQPPPTLDEPASAGTALLSSRELAVLQLIAQGCSNQEIADRLFISLHTVKTHA 841 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 VKL R QA+A A +G Sbjct: 842 RRINVKLGVQRRTQAVAMAKAYGL 865 >gi|327194559|gb|EGE61413.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 260 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + L+L + SA LT RE L L G ++ IA+KL LS +TV ++ + K Sbjct: 174 ARNNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKK 230 Query: 216 LDAVNRIQAIAK 227 ++ NR +A ++ Sbjct: 231 MNVRNRTEAASR 242 >gi|229000138|ref|ZP_04159708.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229007659|ref|ZP_04165252.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228753610|gb|EEM03055.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228759675|gb|EEM08651.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 189 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 43/94 (45%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + ++ EL L++RE L LA +G T+ EIA+ L L Sbjct: 96 PSEDLAAAIRNVMQGKREISPELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKTLYL 155 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV Y+ KL+A NRI+AIA A G+I Sbjct: 156 SSGTVRNYISDVLTKLNAKNRIEAIAIAEEKGWI 189 >gi|50085580|ref|YP_047090.1| putative two-component response regulator protein [Acinetobacter sp. ADP1] gi|49531556|emb|CAG69268.1| putative two-component response regulator protein [Acinetobacter sp. ADP1] Length = 320 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 28/56 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVSHWLALGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAY 310 >gi|319937288|ref|ZP_08011695.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319807654|gb|EFW04247.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 67 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L T+++IAE+L +S TV ++ + KL +RIQA+ + I+ Sbjct: 5 LTKREKEIFTLLTFNKTTKQIAEELCISEKTVRNHISNVIQKLGVESRIQAVLELIKM 62 >gi|317476845|ref|ZP_07936088.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316907020|gb|EFV28731.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 217 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 QV + R LT+RE L+ +G ++EIA+ L +S +TV+ + Sbjct: 134 AEQVRNQMRRSDEGRR---EELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHL 190 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KLDA N I AI G I Sbjct: 191 LDKLDAKNVADLIMTAISRGII 212 >gi|271967312|ref|YP_003341508.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510487|gb|ACZ88765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + LT RE ++L +G +++EIAE L +SV TV+ + Sbjct: 133 AITALIRDYLQRVRQGERVPESILTPREEEVVKLIAEGNSAKEIAETLVISVKTVDRHRA 192 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ AIR G + Sbjct: 193 NILQKLGMRDRLDLTRYAIRAGLV 216 >gi|77413329|ref|ZP_00789524.1| response regulator [Streptococcus agalactiae 515] gi|77160643|gb|EAO71759.1| response regulator [Streptococcus agalactiae 515] gi|319744307|gb|EFV96671.1| LuxR family DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 196 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+E+E L L G TS+EIA L LS TV Y + KL NR++A+ A Sbjct: 133 SNPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 192 Query: 231 FGYI 234 ++ Sbjct: 193 KDWL 196 >gi|77410614|ref|ZP_00786974.1| response regulator [Streptococcus agalactiae CJB111] gi|77163329|gb|EAO74280.1| response regulator [Streptococcus agalactiae CJB111] Length = 196 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+E+E L L G TS+EIA L LS TV Y + KL NR++A+ A Sbjct: 133 SNPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 192 Query: 231 FGYI 234 ++ Sbjct: 193 KDWL 196 >gi|76797806|ref|ZP_00780071.1| response regulator [Streptococcus agalactiae 18RS21] gi|76586820|gb|EAO63313.1| response regulator [Streptococcus agalactiae 18RS21] Length = 186 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+E+E L L G TS+EIA L LS TV Y + KL NR++A+ A Sbjct: 123 SNPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 182 Query: 231 FGYI 234 ++ Sbjct: 183 KDWL 186 >gi|25010373|ref|NP_734768.1| hypothetical protein gbs0299 [Streptococcus agalactiae NEM316] gi|76788230|ref|YP_329033.1| LuxR family transcriptional regulator [Streptococcus agalactiae A909] gi|77404997|ref|ZP_00782098.1| response regulator [Streptococcus agalactiae H36B] gi|23094725|emb|CAD45944.1| unknown [Streptococcus agalactiae NEM316] gi|76563287|gb|ABA45871.1| DNA-binding response regulator, LuxR family [Streptococcus agalactiae A909] gi|77176436|gb|EAO79204.1| response regulator [Streptococcus agalactiae H36B] Length = 196 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+E+E L L G TS+EIA L LS TV Y + KL NR++A+ A Sbjct: 133 SNPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 192 Query: 231 FGYI 234 ++ Sbjct: 193 KDWL 196 >gi|15641290|ref|NP_230922.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586548|ref|ZP_01676334.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121730066|ref|ZP_01682473.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147674446|ref|YP_001216842.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153820380|ref|ZP_01973047.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153823763|ref|ZP_01976430.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|153826597|ref|ZP_01979264.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|227081449|ref|YP_002810000.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|229505135|ref|ZP_04394645.1| DNA-binding response regulator LuxR family [Vibrio cholerae BX 330286] gi|229511193|ref|ZP_04400672.1| DNA-binding response regulator LuxR family [Vibrio cholerae B33] gi|229515653|ref|ZP_04405112.1| DNA-binding response regulator LuxR family [Vibrio cholerae TMA 21] gi|229518312|ref|ZP_04407756.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC9] gi|229529641|ref|ZP_04419031.1| DNA-binding response regulator LuxR family [Vibrio cholerae 12129(1)] gi|229608155|ref|YP_002878803.1| DNA-binding response regulator LuxR family [Vibrio cholerae MJ-1236] gi|254286624|ref|ZP_04961580.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|254848401|ref|ZP_05237751.1| transcriptional regulator [Vibrio cholerae MO10] gi|297578869|ref|ZP_06940797.1| transcriptional regulator [Vibrio cholerae RC385] gi|298498631|ref|ZP_07008438.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9655763|gb|AAF94436.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549227|gb|EAX59259.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121628186|gb|EAX60711.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|126509076|gb|EAZ71670.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126518710|gb|EAZ75933.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146316329|gb|ABQ20868.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|149739609|gb|EDM53829.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|150423382|gb|EDN15327.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|227009337|gb|ACP05549.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227013194|gb|ACP09404.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|229333415|gb|EEN98901.1| DNA-binding response regulator LuxR family [Vibrio cholerae 12129(1)] gi|229345027|gb|EEO10001.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC9] gi|229347422|gb|EEO12382.1| DNA-binding response regulator LuxR family [Vibrio cholerae TMA 21] gi|229351158|gb|EEO16099.1| DNA-binding response regulator LuxR family [Vibrio cholerae B33] gi|229357358|gb|EEO22275.1| DNA-binding response regulator LuxR family [Vibrio cholerae BX 330286] gi|229370810|gb|ACQ61233.1| DNA-binding response regulator LuxR family [Vibrio cholerae MJ-1236] gi|254844106|gb|EET22520.1| transcriptional regulator [Vibrio cholerae MO10] gi|297536463|gb|EFH75296.1| transcriptional regulator [Vibrio cholerae RC385] gi|297542964|gb|EFH79014.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 216 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|320334192|ref|YP_004170903.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755481|gb|ADV67238.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 211 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 159 DFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L L R+ L++RET L+ DG +++EIA LG+SV TV ++ KL Sbjct: 134 AHLVLGVVRAPDGEVSALSDRETEVLRRVADGLSNKEIARDLGVSVSTVKVHVQDILTKL 193 Query: 217 DAVNRIQAIAKAIRFGYI 234 A +R A KA+R G + Sbjct: 194 SASDRTHAAVKALRAGLL 211 >gi|312960986|ref|ZP_07775491.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284644|gb|EFQ63220.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 261 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 63/216 (29%), Gaps = 17/216 (7%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + N ++ + + + D F G Sbjct: 33 LHQCLPFDNALAIFYPLEGPPQALEEYDAQPSSKPASMLAY--LNGLYLLDPFFQACREG 90 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLML 141 +++ + + + + + F ++L + F Sbjct: 91 YASGVYRLEEVAPDHFRQSEYFLNYFHDNVLEDEVQFILQLPGAGTLSLSLGMQRRFSGE 150 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDG 188 ++ ++ + +R A + L+ERE +L G Sbjct: 151 ETGLMTLLAAWVLPLMQQHWQQSTQRVPAMDSQIRDALSQFGSGVLSERELEIARLVLRG 210 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++S+ +AE+L +S TV + KLD +++ + Sbjct: 211 FSSKAMAERLNISPDTVKVHRRHLYAKLDILSQPEL 246 >gi|312198290|ref|YP_004018351.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229626|gb|ADP82481.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 248 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDG 188 + + + A + ++ A G ++I F+ + +S A LT+RE + L +G Sbjct: 137 LLAAIRTVAAGDALL-APGVTRRLIAAFVRVPAPPASPLTGLASTLTDRERAVLTQIANG 195 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y++ EIA+ L +SV TV ++G KL A +R Q + A G + Sbjct: 196 YSNAEIAQALYVSVSTVKTHVGHLLAKLAARDRAQLVIAAYESGLV 241 >gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 216 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A LT E +Q G + EIA++L +S T+ +++ + K NR + A Sbjct: 151 PANVELTPTELKVVQFVARGLANREIAQELNVSQRTIESHVSNMLGKTGLHNRTELARWA 210 Query: 229 IR 230 I Sbjct: 211 IE 212 >gi|91223385|ref|ZP_01258650.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|91191471|gb|EAS77735.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] Length = 214 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 14/143 (9%) Query: 87 IIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144 W + E L +L G+L + V YV+ Sbjct: 73 FGWSFMLHNVPCEKVQTDLLHWKLLKGILLRSA---SVTHICDGAEYVLKGG-------- 121 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + +++ ++ LT RE L+L G ++++IA +L LS T Sbjct: 122 -LWLPRMYLEKLVLNYRHANLSEEQQHDELTCREKQILELLVYGISNQQIASRLFLSEST 180 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 V +++ KLD +R A+ Sbjct: 181 VKSHIYKLYKKLDVHSRHDAVKL 203 >gi|259419012|ref|ZP_05742929.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259345234|gb|EEW57088.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 251 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 74/237 (31%), Gaps = 10/237 (4%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLD 60 SE + +++EL NR YT+ L N+ + Sbjct: 4 SEYLHQLTQFKTIEELWHAHVSQMNRYGFDRLLYGYTLFKTRTSLGDPDDFVVLSNHSPE 63 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV---IESSGQLSVRLEGGLLPFAG 117 + L W++ Q+ ++ + + AG Sbjct: 64 YLQGFLVDGLYSHAPMLTWALENEGHASWRAAQDMAAQGLLDCKARKVHEFNQAMNVCAG 123 Query: 118 IAFPVRLGFHKN--GYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKKRSS---AA 171 + + L + I HG+ ++ + L Sbjct: 124 YTISFNSATDRFKGAISLAARPGLDQDAIDQIWAEHGSDIVLMNNVAHLKILTLPYHAPN 183 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+R+ LQ GDG T+++IA +GL+ T+ +L A L QA+ KA Sbjct: 184 RALTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLCVETTAQAVLKA 240 >gi|237725811|ref|ZP_04556292.1| transcriptional regulator [Bacteroides sp. D4] gi|265753165|ref|ZP_06088734.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] gi|229435619|gb|EEO45696.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|263236351|gb|EEZ21846.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] Length = 256 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L+L G+ S+EIA+KL +S+HTV+ + + KL N ++AI Sbjct: 191 PVVSLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVHNSLEAIRLGQ 250 Query: 230 RFGYI 234 G + Sbjct: 251 ESGLL 255 >gi|229525876|ref|ZP_04415281.1| DNA-binding response regulator LuxR family [Vibrio cholerae bv. albensis VL426] gi|229339457|gb|EEO04474.1| DNA-binding response regulator LuxR family [Vibrio cholerae bv. albensis VL426] Length = 214 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 152 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 211 Query: 233 YI 234 + Sbjct: 212 LL 213 >gi|229082566|ref|ZP_04215029.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228700998|gb|EEL53521.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 189 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|291295648|ref|YP_003507046.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470607|gb|ADD28026.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 200 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + + I L + S LT+RE L+LAG+G TS EIA Sbjct: 105 DAPSSELAEAVRRVYLGGRAIDPLLAA--QAWSEEDPLTDRERRVLRLAGEGRTSAEIAA 162 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LGLS TV YL A KL A NR++A A G++ Sbjct: 163 ELGLSEGTVRNYLSEAISKLGAQNRVEAARIAREKGWL 200 >gi|223934475|ref|ZP_03626396.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896938|gb|EEF63378.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 231 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ ++LTERE L L G+ +EIA+ L +S TV ++ + KL +R +A Sbjct: 167 RAPEIKSLTEREEQVLALLSKGHAYKEIADLLNISFETVRTHVRTIYDKLHVHSRTEATL 226 Query: 227 K 227 K Sbjct: 227 K 227 >gi|254209388|ref|ZP_04915734.1| DNA-binding response regulator NarL [Burkholderia mallei JHU] gi|147750161|gb|EDK57232.1| DNA-binding response regulator NarL [Burkholderia mallei JHU] Length = 246 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 177 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 236 Query: 232 GY 233 G Sbjct: 237 GL 238 >gi|145594766|ref|YP_001159063.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145304103|gb|ABP54685.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 231 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGY 189 + +A + A +++ +L ++ +LT RE L G Sbjct: 123 LAAAIRSVAAGDAVAAPRILDRLLNQLADLLPDPAATPSRLLDSLTGREREVLVQVARGR 182 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA++L +S TV ++G+ KL +R+QA+ A G I Sbjct: 183 SNAEIAQELSVSETTVKTHVGNVLTKLRLRDRVQAVVLAYESGLI 227 >gi|114561746|ref|YP_749259.1| transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333039|gb|ABI70421.1| transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 222 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 12/159 (7%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG-FHKNGYVIFTS 136 +S +P++ + E + L G L + + VR + + + Sbjct: 57 AALDSKGIPLLVSRLVEHVPV----ALYQVERGSLDQESALLLGVRGLLYSDQRMDLMLT 112 Query: 137 EFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSCLQLAGDGY 189 + ++ + ++ E+ + + LT RE + +QL G Sbjct: 113 GLRKMVSDELWYDRPLISKIFRRLVQQLDTSAEIPADTVAILQRLTSRERTIIQLVSSGA 172 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++EIA++L +S HTV A++ S K ++ NR++ + A Sbjct: 173 RNKEIAQRLCISEHTVKAHISSIFRKTESRNRVELLRWA 211 >gi|116621985|ref|YP_824141.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225147|gb|ABJ83856.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 216 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE LQ+ +G +++E+A L +S TV + KLD + + I A+R Sbjct: 153 DLLSDREREVLQMIAEGRSNKEVANLLNISPTTVETHRAHILQKLDIHSVPELILYAVRK 212 Query: 232 GYI 234 G I Sbjct: 213 GII 215 >gi|300787834|ref|YP_003768125.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797348|gb|ADJ47723.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 3/143 (2%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF---LMLANEVIIE 148 + + + G +R G P + V + + + + + Sbjct: 50 LLDLYLPGMDGLEVLRRLGPAAPRVLMLTTVGRPREIREALTAGAAGFVLKDASGDELAA 109 Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A A +Q +T S LT RE L+L G+G ++ +IA +L L+ TV + Sbjct: 110 AVRAAHQGVTALSPAAASALSGGGVLTPRERDVLELLGEGLSNRDIAARLRLAERTVKVH 169 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 +G+ KL +R QA A Sbjct: 170 VGNVLAKLGVTSRTQAALAARDR 192 >gi|240172655|ref|ZP_04751314.1| transcriptional regulator, LuxR family protein [Mycobacterium kansasii ATCC 12478] Length = 968 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 5/150 (3%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 I + + + + G V + + A + EA Sbjct: 818 ARIAALGGDDQAAERLFGAALEMDRRMGSVVHVSETLARQALFEASRGRAEAARRLADEA 877 Query: 150 HGAC-----YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +V+ L + LT+RE L+L G ++ I E+L +S +T Sbjct: 878 CAIAGPIGQVRVLGLVDSLLTGDLAGPDGLTDREIEVLRLLAAGLSNRAIGERLYISTNT 937 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S +K A NR QA A + Sbjct: 938 AANHVRSILIKTGAANRTQAAMYAADHQLL 967 >gi|296130518|ref|YP_003637768.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022333|gb|ADG75569.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 209 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 GY++ + L V A G + L + R LT RE L Sbjct: 97 AGATGYLLKDTPREQLVAGVRAAARGESALSPSIAQRLVRQVRGGTGERLTPREREVLAG 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ + +L ++ TV +L A KL +R +A+ AI G + Sbjct: 157 VARGLSNAAVGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 206 >gi|150376486|ref|YP_001313082.1| two component LuxR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031033|gb|ABR63149.1| two component transcriptional regulator, LuxR family [Sinorhizobium medicae WSM419] Length = 219 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 37/88 (42%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + E + + + L +S+ LT RE L L G ++++IA K Sbjct: 118 RTVASGESYVAPTLSAKLLTGQLLNPAPAKSNLVAELTRREQEVLHLVASGMSNKQIARK 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L L TV ++ KL+ NR +A Sbjct: 178 LDLHEKTVKHHMTQIMAKLNVANRTEAA 205 >gi|114048791|ref|YP_739341.1| LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113890233|gb|ABI44284.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 221 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 44/86 (51%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++ + Q + D EL ++ + LT RE + +Q +G ++EIA++L +S Sbjct: 124 DRTLLSKMFCRMVQKLEDNNELSADNAAVLQMLTNRERTIIQFVSNGARNKEIADRLFIS 183 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAK 227 HTV A++ S K + NR++ + Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRW 209 >gi|298250665|ref|ZP_06974469.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548669|gb|EFH82536.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1075 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 39/85 (45%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 D E + S++ L+E E L+ +GYT EIA +L + +TV + Sbjct: 991 QLLAMLDKQDMAEKPAENSASTELLSEHEFVILRCLAEGYTDREIARRLVRAENTVKTHT 1050 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QAIA++ G + Sbjct: 1051 KHIYDKLNVHSRTQAIARSRELGLL 1075 >gi|228988578|ref|ZP_04148665.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771195|gb|EEM19674.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 189 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|126452622|ref|YP_001066938.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 1106a] gi|242317399|ref|ZP_04816415.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 1106b] gi|126226264|gb|ABN89804.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 1106a] gi|242140638|gb|EES27040.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 1106b] Length = 233 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 164 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 223 Query: 232 GY 233 G Sbjct: 224 GL 225 >gi|53719924|ref|YP_108910.1| putative response regulator protein [Burkholderia pseudomallei K96243] gi|53724171|ref|YP_103355.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC 23344] gi|76809195|ref|YP_334149.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 1710b] gi|121601164|ref|YP_993557.1| DNA-binding response regulator NarL [Burkholderia mallei SAVP1] gi|124386217|ref|YP_001029014.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC 10229] gi|126440837|ref|YP_001059655.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 668] gi|126449502|ref|YP_001081065.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC 10247] gi|134277548|ref|ZP_01764263.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 305] gi|167003441|ref|ZP_02269227.1| DNA-binding response regulator NarL [Burkholderia mallei PRL-20] gi|217420735|ref|ZP_03452240.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 576] gi|226195464|ref|ZP_03791052.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei Pakistan 9] gi|237813049|ref|YP_002897500.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Burkholderia pseudomallei MSHR346] gi|238561643|ref|ZP_00441776.2| DNA-binding response regulator NarL [Burkholderia mallei GB8 horse 4] gi|254177953|ref|ZP_04884608.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC 10399] gi|254184342|ref|ZP_04890932.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 1655] gi|254191372|ref|ZP_04897876.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei Pasteur 52237] gi|254195930|ref|ZP_04902356.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei S13] gi|254200313|ref|ZP_04906679.1| DNA-binding response regulator NarL [Burkholderia mallei FMH] gi|254261045|ref|ZP_04952099.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 1710a] gi|254357939|ref|ZP_04974212.1| DNA-binding response regulator NarL [Burkholderia mallei 2002721280] gi|52210338|emb|CAH36317.1| putative response regulator protein [Burkholderia pseudomallei K96243] gi|52427594|gb|AAU48187.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC 23344] gi|76578648|gb|ABA48123.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 1710b] gi|121229974|gb|ABM52492.1| DNA-binding response regulator NarL [Burkholderia mallei SAVP1] gi|124294237|gb|ABN03506.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC 10229] gi|126220330|gb|ABN83836.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 668] gi|126242372|gb|ABO05465.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC 10247] gi|134251198|gb|EBA51277.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 305] gi|147749909|gb|EDK56983.1| DNA-binding response regulator NarL [Burkholderia mallei FMH] gi|148027066|gb|EDK85087.1| DNA-binding response regulator NarL [Burkholderia mallei 2002721280] gi|157939044|gb|EDO94714.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei Pasteur 52237] gi|160698992|gb|EDP88962.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC 10399] gi|169652675|gb|EDS85368.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei S13] gi|184214873|gb|EDU11916.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 1655] gi|217396147|gb|EEC36164.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 576] gi|225932424|gb|EEH28423.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei Pakistan 9] gi|237505451|gb|ACQ97769.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Burkholderia pseudomallei MSHR346] gi|238524266|gb|EEP87700.1| DNA-binding response regulator NarL [Burkholderia mallei GB8 horse 4] gi|243061043|gb|EES43229.1| DNA-binding response regulator NarL [Burkholderia mallei PRL-20] gi|254219734|gb|EET09118.1| nitrate/nitrite response regulator protein NarL [Burkholderia pseudomallei 1710a] Length = 233 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 164 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 223 Query: 232 GY 233 G Sbjct: 224 GL 225 >gi|51892059|ref|YP_074750.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855748|dbj|BAD39906.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 230 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LTERE L L G T+++IAE+L +S+ TV A+ + KLD + Sbjct: 153 RGASEAQAQLAQLTEREREVLTLIAHGLTNQQIAERLFISIKTVQAHRANLMEKLDLHDA 212 Query: 222 IQAIAKAIRFGYI 234 ++ AI+ G + Sbjct: 213 VELTKFAIKSGLL 225 >gi|297192611|ref|ZP_06910009.1| two-component system DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151436|gb|EFH31165.1| two-component system DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + + ++ L+ F + LT Sbjct: 111 IRGGARGYVTKTITGSDLVDSVFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 170 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 171 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 229 >gi|298252386|ref|ZP_06976187.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297545702|gb|EFH79572.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 202 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +RE L+L +G +++EIA+ L ++ T+ +L KL+ +R QAI A + G+ Sbjct: 141 LNKRELEVLRLLAEGRSNQEIADTLIVAKSTIKWHLKQIYSKLNVHSRTQAIVCARQIGF 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|296452018|ref|ZP_06893733.1| salavaricin two component response regulator [Clostridium difficile NAP08] gi|296879587|ref|ZP_06903566.1| salavaricin two component response regulator [Clostridium difficile NAP07] gi|296259209|gb|EFH06089.1| salavaricin two component response regulator [Clostridium difficile NAP08] gi|296429390|gb|EFH15258.1| salavaricin two component response regulator [Clostridium difficile NAP07] Length = 206 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 140 EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIQM 199 Query: 232 GYI 234 GYI Sbjct: 200 GYI 202 >gi|255657144|ref|ZP_05402553.1| salavaricin two-component response regulator [Clostridium difficile QCD-23m63] Length = 200 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 134 EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIQM 193 Query: 232 GYI 234 GYI Sbjct: 194 GYI 196 >gi|255308234|ref|ZP_05352405.1| salavaricin two-component response regulator [Clostridium difficile ATCC 43255] Length = 200 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 134 EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIQM 193 Query: 232 GYI 234 GYI Sbjct: 194 GYI 196 >gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 212 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT E +QL G + +IA+KL +S T+ +++ + K + NR + A Sbjct: 147 PSHVELTPTELKVIQLVAQGMANRDIADKLNVSQRTIESHVSNMLNKTNLHNRTELARWA 206 Query: 229 IR 230 I Sbjct: 207 IE 208 >gi|326331183|ref|ZP_08197479.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325951078|gb|EGD43122.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + + S + LT +E L L G+G T+ EIA ++ L+ TV Y Sbjct: 131 LDPLMTAKVMEKMRNPDGESPQMQALTPQEKRLLALIGEGLTNREIAGRMFLAEKTVKNY 190 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + S KL R QA A Sbjct: 191 VSSILAKLGVQRRTQAALMAKEL 213 >gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510] gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510] Length = 310 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 43/125 (34%), Gaps = 8/125 (6%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAAR 172 AG+ R F E +E ++L L + + Sbjct: 180 LAAGLVRLRRPSPPGGAMEPFALELPDGEGVRRLEFTYLSPAGPDEYLFRLSEPTAGRQE 239 Query: 173 N-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L +G + +I E LG+S TVN +L KL NR A Sbjct: 240 AILRDALGLTAREAEVLLWIANGKPNRDIGEILGISPRTVNKHLEQVFAKLGVENRASAA 299 Query: 226 AKAIR 230 A AIR Sbjct: 300 ALAIR 304 >gi|256396212|ref|YP_003117776.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362438|gb|ACU75935.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 241 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 V + + ++ + + + + +T+RE L L G Sbjct: 131 DAVRVTASGDAIIAPSVTRKLIAEFAIRPDPGATAPRRGDKALLDGVTDREREVLTLVGR 190 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE+L +S T A++ KL A +R+Q + A G + Sbjct: 191 GLSNGEIAEELFISAATAKAHVARLFTKLGARDRVQLVITAYEAGLV 237 >gi|297197553|ref|ZP_06914950.1| luxR family two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715575|gb|EDY59609.1| luxR family two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 233 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQL 184 G + ++ + + + +++ + L + A L+ RE L L Sbjct: 118 RGSDLVSAVRTVASGQSMLDPATTAR--LMRSLRADPAETPAMAPELASLSPRERDILAL 175 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 GDG T+ EI +KL LS TV ++ KL R+QA A Sbjct: 176 IGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLA 219 >gi|158315190|ref|YP_001507698.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110595|gb|ABW12792.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 226 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE + L +GY++ EIA++L +S T ++ A KL+A +R Q + A Sbjct: 156 ALAALTAREREVMALVAEGYSNHEIADRLVISPLTARTHVHRAMAKLNARDRAQLVVIAY 215 Query: 230 RFGYI 234 + G + Sbjct: 216 QSGLL 220 >gi|94985596|ref|YP_604960.1| LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94555877|gb|ABF45791.1| transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 197 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G +++ A +LG+S TV ++ + KL +R A+ + I+ G Sbjct: 135 LTPRERDVLALLAAGLSNKRAARELGVSESTVKFHVQAVYSKLGVQSRAAAVTRGIQLGL 194 Query: 234 I 234 + Sbjct: 195 L 195 >gi|320333847|ref|YP_004170558.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755136|gb|ADV66893.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 215 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 8/92 (8%) Query: 151 GACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSV 202 V L + AA LT+RE L+L GY++ EIA L + Sbjct: 124 WLQPAVTQRVLRGLEAFRPAAEPFTPCDAVTLTDRECDVLRLLAGGYSNREIAGALRTTE 183 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +Y+ + KL +R +A+ KA+ G + Sbjct: 184 GTVKSYVSNVLSKLGVRDRTRAVLKALELGVL 215 >gi|78046491|ref|YP_362666.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926045|ref|ZP_08187409.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78034921|emb|CAJ22566.1| putative transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543571|gb|EGD14990.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 235 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + A + H V ++ N+ + Sbjct: 86 AAGDGQEAAWLMPPRPSDIREARVPIHALGTTHGMLCVAWSEGRPAPGNDDVQALQAFAL 145 Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E ++R L++RE L L G T+ +A +LG+S TV Sbjct: 146 LLPAMVAEPAKPIATRRRKPLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL+ +R QA A++ G Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|298247008|ref|ZP_06970813.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549667|gb|EFH83533.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 644 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I+A QV + + R +L+ERE L+L G ++ +I E L +S TV Sbjct: 558 IQAQRLRNQVRRRARKPARSRLPL--DLSEREVEVLRLVATGKSNRQIGEILVISERTVI 615 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S K NR A A AIR + Sbjct: 616 NHIASIFNKTGVSNRAGATAFAIRHKLV 643 >gi|288924067|ref|ZP_06418126.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344590|gb|EFC79060.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 171 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 32/69 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L A L +RE LQL DG T+ +I +LGLS TV Y+ S KL Sbjct: 96 ERLRDGPHEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGL 155 Query: 219 VNRIQAIAK 227 +R QA Sbjct: 156 ASRTQAAVY 164 >gi|262042600|ref|ZP_06015756.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329998588|ref|ZP_08303172.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] gi|259040034|gb|EEW41149.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538607|gb|EGF64707.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] Length = 182 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + LTERE L G T+ +IA L +S +TV +L + Sbjct: 103 MHPAMYAADHASTPVENSPLTERECEILNELRCGATNLDIARALFISENTVRTHLYNVFR 162 Query: 215 KLDAVNRIQAIAKAIRF 231 KL NR QA++ A Sbjct: 163 KLSVKNRTQAVSWANEH 179 >gi|148657384|ref|YP_001277589.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148569494|gb|ABQ91639.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 214 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 20/219 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + L ++ ++ N + L+ + + D + + G Sbjct: 13 ADDHELVLEGLRGLLERENDM----TVVATATDGESLLALIESERPDVVVMDLAMPTRDG 68 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 L +P+ + + L G A + Sbjct: 69 LSCLREIRRRGMPVKIVILTAFGDGGALQSAWE------LQADGFALKTDPPRQTIATIR 122 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + ++ V+ +A T L LT+RE L+L +G + + Sbjct: 123 NVAHGQIVFPRVVRQAADPSQTQHTSLLA----------RLTQRERDVLRLLAEGMPNAQ 172 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 IAE+L + TV +L + KL NR +A R G Sbjct: 173 IAERLVVQESTVKYHLQNIFQKLGVTNRTEAAQVYYREG 211 >gi|73538891|ref|YP_299258.1| LuxR response regulator receiver [Ralstonia eutropha JMP134] gi|72122228|gb|AAZ64414.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia eutropha JMP134] Length = 217 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAAR-------NL 174 L GY++ E L + + A G + +T L + + A L Sbjct: 95 LRRGARGYLLKNIETEALTSAIRRAAAGEPVISEAMTAKLVQQFRAPAPAPVRQDDTAKL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE +Q G +++EIA LG++ TV ++ + KL+ +R+Q A+ G Sbjct: 155 TAREREIVQGLTRGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVERGL 213 >gi|26987503|ref|NP_742928.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24982170|gb|AAN66392.1|AE016267_1 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 905 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A +++ + + L+ RE + L+L G ++++I+E+L +S+HTV Sbjct: 818 AACPVQAELLKHLPPVPIASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKT 877 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL R QA+AKA G + Sbjct: 878 HASHINSKLGVERRTQAVAKAKSLGLL 904 >gi|313896828|ref|ZP_07830375.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon 137 str. F0430] gi|312974275|gb|EFR39743.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon 137 str. F0430] Length = 217 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAAR-----NLTERE 178 GY+ TS L + + A L R A LTERE Sbjct: 97 GAMGYLPKTSADDELFDALHALAEGRRYLSPNAQQSLLAAMFSRPGDAEEDPRARLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GYT E AE+L LS TV+ + KL R +A AIR G + Sbjct: 157 KEVFDRLIRGYTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHGLL 212 >gi|322436606|ref|YP_004218818.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321164333|gb|ADW70038.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 240 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E + A ++++ ++ ++++ LT RE +Q +G +++++A++ +S Sbjct: 149 ERVANLLKALHELMQKAAQVPERKT---YGLTPRELEVVQCIVEGCSNKDVAKQFTISEE 205 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + K R++ AI + Sbjct: 206 TVKRHLSNIFDKTGVSTRLELALFAIAHKLV 236 >gi|256380943|ref|YP_003104603.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925246|gb|ACU40757.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 234 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETS 180 ++ + E I+ AH + L S A + L+ RE Sbjct: 115 AAGVRGLVPRTAEPAEVVEAILRAHRERVHLDPTLAPLAAGFSPGADSGTRRALSRREYE 174 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL DG ++ +A+ L +SV TV ++ + KL A +R A++ A + G + Sbjct: 175 VLQLIADGLENQSVADALYVSVETVRTHVKNILRKLRARDRTHAVSLAYQAGLL 228 >gi|238062472|ref|ZP_04607181.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884283|gb|EEP73111.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 226 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A + LTERE L L DG ++ EI ++ LS TV ++ + KL NR++ Sbjct: 149 DEHAVRAVQRLTEREREVLTLLADGLSNSEIGGRMFLSAGTVKDHVSAILTKLGVDNRVR 208 Query: 224 AIAKAIRFGYI 234 A A R G + Sbjct: 209 AALLAERAGLL 219 >gi|284039670|ref|YP_003389600.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283818963|gb|ADB40801.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 214 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 157 ITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + L + + + +LT RE ++L +G ++ +IAE+L LS T+ + + Sbjct: 135 LPNELAIDPRETDPFVKQFSLTPREIEIIRLIRNGLSTSQIAERLFLSAETIKTHRKNIY 194 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KL + I A G Sbjct: 195 FKLGINSVAALILFANEQGI 214 >gi|186682185|ref|YP_001865381.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464637|gb|ACC80438.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 215 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G + EIAE L LS +TV Y+ + +L +R QA A Sbjct: 152 QLTPRELDVLRLIASGANNREIAESLFLSENTVKNYVTNILSRLSLRDRTQAALFAHSL 210 >gi|269219143|ref|ZP_06162997.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848 str. F0332] gi|269211290|gb|EEZ77630.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848 str. F0332] Length = 235 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 40/80 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ ++L S ++RE L+L +++ EIA +L + TV ++ S Sbjct: 154 RLVKNYLVPLPPDSGVNVQFSKREMDVLRLLCQAHSNSEIAAQLYVQESTVKTHISSIMA 213 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R++ + +A G + Sbjct: 214 KLEVNSRLKVVVRAYELGLV 233 >gi|229489605|ref|ZP_04383468.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229323702|gb|EEN89460.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 230 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 38/88 (43%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A Q + LE + LT RE L+ G ++ EIA K +S TV Sbjct: 133 ARATRRLLQHVGPLLEGSAPEAQLPEELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVK 192 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++G K + +R+QA+ A + G + Sbjct: 193 THVGRVLSKTHSRDRVQAVVFAFQIGLV 220 >gi|187920901|ref|YP_001889933.1| two component LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719339|gb|ACD20562.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 210 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 13/167 (7%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + S L R+ P + + + Sbjct: 42 RLRARRFDLVLLDMTMPGISGVDLIRRVRAEQPPLPILVLSIHNEAQVVSRALRAGATGY 101 Query: 141 LANEVIIEAHGACYQVIT-------------DFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + A + + E + L++RE LQ+ Sbjct: 102 VTKDSDPDVLLAAIRKLAGGGRFIDPKLVDAMVFETHSGDAPPHEVLSDREFQVLQMLAA 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE LS T++ + KL N + I A+R G + Sbjct: 162 GQSINEIAESCSLSAKTISTHKMRLMQKLGLNNNAELIRYAVRHGLV 208 >gi|186471314|ref|YP_001862632.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197623|gb|ACC75586.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 210 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 13/156 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + S L R+ + + + L + + Sbjct: 53 LDMTMPGISGVDLIRRVRAEQPALPVLVLSIHDEAQVASRALRAGATGYLTKDSDPDVLL 112 Query: 152 ACYQVITDFLEL-------------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A + + D + L++RE LQ+ G + EIA+ Sbjct: 113 AAIRKLADGGRFIDPKLVDAMVFETHRGDMPPHEVLSDREFQVLQMLAAGKSINEIADIC 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS T++ + KL N + I AIR G I Sbjct: 173 ALSAKTISTHKMRLMQKLGLANNAEVIRYAIRHGLI 208 >gi|254516346|ref|ZP_05128405.1| transcriptional regulator [gamma proteobacterium NOR5-3] gi|219674769|gb|EED31136.1| transcriptional regulator [gamma proteobacterium NOR5-3] Length = 925 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +++I +L +S HTV +L KL+ NR AIAKA R G Sbjct: 858 LTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKATRTGL 917 Query: 234 I 234 + Sbjct: 918 L 918 >gi|223938390|ref|ZP_03630284.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223892959|gb|EEF59426.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 234 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ LT RET L + +G +++E+A ++G+ V TV + KLD N AI Sbjct: 167 SKKLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKLDIHNVAGLTKYAIA 226 Query: 231 FGYI 234 G I Sbjct: 227 HGII 230 >gi|169631593|ref|YP_001705242.1| two-component LuxR family response regulator [Mycobacterium abscessus ATCC 19977] gi|169243560|emb|CAM64588.1| Putative two-component system response regulator, LuxR family [Mycobacterium abscessus] Length = 222 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G V+ +F + ++ A L++RET L+L G ++++IA +L LS TV Sbjct: 135 GLAGLVLGEFRRMSSAPAADADETPRLSDRETEVLRLVAKGLSAKQIATRLSLSHRTVEN 194 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ S KL NR++ AI G Sbjct: 195 HVQSTLRKLQLGNRVELTRYAIEHGL 220 >gi|46201160|ref|ZP_00055614.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 190 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT R+ L L G ++++IA +L ++ TV A++ + KL +R QA+ A + G Sbjct: 129 SLTHRQRMVLSLLARGKSNKQIAYELDVTNTTVKAHMTAILRKLKVTSRTQAVIVARQIG 188 >gi|319893351|ref|YP_004150226.1| Two-component response regulator [Staphylococcus pseudintermedius HKU10-03] gi|317163047|gb|ADV06590.1| Two-component response regulator [Staphylococcus pseudintermedius HKU10-03] gi|323463599|gb|ADX75752.1| two-component response regulator NreC [Staphylococcus pseudintermedius ED99] Length = 216 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + Sbjct: 145 EYSNDPFKVLSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTRIMDKLNLKSKPEL 204 Query: 225 IAKAIRFGYI 234 + A++ + Sbjct: 205 VEYALKKKLL 214 >gi|315180669|gb|ADT87583.1| transcriptional regulator UhpA [Vibrio furnissii NCTC 11218] Length = 208 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 14/164 (8%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGYVIFTS 136 +P+ I E+ L RL F I + G + S Sbjct: 44 TQMPVDVAVIDISMPDENGLSLLERLRQHDPAFKAIILSIYDSASFVKKALDAGAQGYLS 103 Query: 137 EFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + V C + + ++ +LT+RE G Sbjct: 104 KRCGPSELASAIRTVAAGKRYLCADALVNLS--NPDINNVLVDLTKRELEVFDQLIQGKE 161 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA+ L LS TV+ + + KL+ N + I AI+ + Sbjct: 162 VKEIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFAIQHHLL 205 >gi|228994069|ref|ZP_04153970.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228765717|gb|EEM14370.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 189 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 43/94 (45%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + ++ EL L++RE L LA +G T+ EIA+ L L Sbjct: 96 PSEDLAAAIRNVMQGKREISPELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKTLYL 155 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV Y+ KL+A NRI+AIA A G+I Sbjct: 156 SSGTVRNYISDVLTKLNAKNRIEAIAIAEEKGWI 189 >gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 212 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT E +QL G + EIAEKL +S T+ +++ + K NR + A Sbjct: 147 PSNVELTPTELKVIQLVAQGMANREIAEKLNVSQRTIESHVSNMLNKTSLHNRTELARWA 206 Query: 229 IR 230 I Sbjct: 207 IE 208 >gi|156932979|ref|YP_001436895.1| transcriptional regulator NarP [Cronobacter sakazakii ATCC BAA-894] gi|156531233|gb|ABU76059.1| hypothetical protein ESA_00782 [Cronobacter sakazakii ATCC BAA-894] Length = 214 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 14/134 (10%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY------------- 154 L + I V + L + EA Sbjct: 74 LRRDGVNARIIVLTVSDAQSDIFAMTDAGADGYLLKDSEPEALLEAIRAGAAGAGAFSEQ 133 Query: 155 -QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 Q + ++R + LT RE LQ G ++++IA L +S TV ++ + Sbjct: 134 VQAYLLARKPDEQRDAPFALLTGRELDVLQEVARGLSNKQIASALQISEETVKVHIRNLL 193 Query: 214 VKLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 194 RKLNVRSRVAATVL 207 >gi|326384821|ref|ZP_08206497.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326196483|gb|EGD53681.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 229 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 R + LTERE +L G ++ EIA++L L + TV ++G KL Sbjct: 143 FARAPTAPTSRPAVLDVLTERELEVFELVAVGLSNGEIADRLHLGLTTVKTHIGRLLTKL 202 Query: 217 DAVNRIQAIAKAIRFGYI 234 DA +R+ + +A G + Sbjct: 203 DARDRVHLVIRAYETGLV 220 >gi|317123319|ref|YP_004097431.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587407|gb|ADU46704.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 985 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 7/153 (4%) Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 W QE+ ++ R G F + + + + + +V Sbjct: 832 WVLGQEDPPPVEEMLVAWRASVEAFDRLGHVFEAARSRGRLAAALHAAGRDVDSRQVAGS 891 Query: 149 AHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A ++ L + LT RE L L G ++ +I ++L +S Sbjct: 892 AREVAVRLRARPLLAELDALAPRAPAAATAVELTPRELEVLALVARGLSNGQIGKQLYIS 951 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV+ ++ + KL A R +A A A + Sbjct: 952 TKTVSVHVSNLLAKLGASGRTEAAAIARDRALV 984 >gi|228925153|ref|ZP_04088263.1| Response regulator receiver [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834492|gb|EEM80021.1| Response regulator receiver [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 537 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLE---LFKKRSSAARN 173 +R G S L + ++ HG +++ + E + Sbjct: 416 IRNGADGYLLKSIDSRELAESIRLVYRGGTMINHGLFHRMWEENEEKGSFESRSDGKEYG 475 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + IA L LS TV Y + KL NR +A+ KA G Sbjct: 476 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDKGL 535 Query: 234 I 234 + Sbjct: 536 L 536 >gi|118472043|ref|YP_890213.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] gi|118173330|gb|ABK74226.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] Length = 305 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ L +R + L T RE L+L G ++ +IAE+L ++VHTV + Sbjct: 214 RVSAILLRRLSTLASQRQPVHKELVLTSREIQILRLLEMGLSNRDIAEQLCIAVHTVKNH 273 Query: 209 LGSATVKLDAVNRIQAIAKAI 229 + S KL R QA A A Sbjct: 274 VHSLLAKLGVSTRAQAAALAR 294 >gi|299533898|ref|ZP_07047264.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298718125|gb|EFI59116.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 223 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+L GY+S EI+ +L +S TV+ ++ + KL A R A+ A Sbjct: 161 EKLSEREIEILKLIACGYSSPEISTQLKISTLTVSTHVKNMYRKLQAKTRAHAVKAASLR 220 Query: 232 GYI 234 G I Sbjct: 221 GLI 223 >gi|312198139|ref|YP_004018200.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229475|gb|ADP82330.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 227 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + R A +LT RE L G ++EEIAE L +S T ++ Sbjct: 137 ALVRRFLASPQPRLDARLPAMTDLTAREREITVLVARGLSNEEIAELLVISPATAKTHVN 196 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 A K+ A +R Q + A G Sbjct: 197 RAMTKVHARDRAQLVVFAYENGL 219 >gi|127511776|ref|YP_001092973.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126637071|gb|ABO22714.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 209 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 L + + V ++ ++++E Q Sbjct: 69 LNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKNAMQGHRVI 128 Query: 161 LELFKK----------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 E + + NLT RE L+ +G ++ I+E+L +S TV ++ Sbjct: 129 SESVEDFIYELKDGADEQAWIDNLTPRELQILEQLAEGKSNRVISEQLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|330828902|ref|YP_004391854.1| DNA-binding response regulator, LuxR family [Aeromonas veronii B565] gi|328804038|gb|AEB49237.1| DNA-binding response regulator, LuxR family [Aeromonas veronii B565] Length = 212 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 14/134 (10%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKK 166 L + + V ++ L + + A V+T L + Sbjct: 73 LRAEEITSRVVILTVSDARQDVVALLKAGADGYLLKDTEPDLLLAQLADVMTGKQILSEP 132 Query: 167 RSS-------------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +LT RE L+ G +++++A L +S TV ++ S Sbjct: 133 LRPYLENIYELDHLQQKLESLTRREMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLL 192 Query: 214 VKLDAVNRIQAIAK 227 KL+A +R++A Sbjct: 193 KKLEAQSRVEAAVM 206 >gi|311030273|ref|ZP_07708363.1| two-component response regulator DesR [Bacillus sp. m3-13] gi|311032980|ref|ZP_07711070.1| two-component response regulator DesR [Bacillus sp. m3-13] Length = 199 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S LAN + G EL LTERE + L+L Sbjct: 94 AGVTGYLLKDSPSEDLANSIRSIMSGRRVYA----PELMDDFYGEENPLTEREKAVLELV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA++L + TV Y+ + KL+ NRI+AI ++ G+ Sbjct: 150 ADGKNTQEIADELRIKSGTVRNYISNILDKLEVKNRIEAITQSKEKGW 197 >gi|240168620|ref|ZP_04747279.1| two-component transcriptional regulatory protein DevR [Mycobacterium kansasii ATCC 12478] Length = 215 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L ++ LT++E + L L +G T+++IA+++ L+ TV Sbjct: 122 RSLLDNRAAAALMSKLRGGVEKPDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 Y+ KL R QA A + Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFATQL 207 >gi|226312417|ref|YP_002772311.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095365|dbj|BAH43807.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 214 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++I +L K + LT RE ++L GY+++E+A+KL +SV TV + + Sbjct: 130 VSQEIINLWLRSDAKTLPSV--LTLREKELVRLIVLGYSNKEMADKLLISVKTVENHKTN 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL ++ Q I AI+ Y+ Sbjct: 188 IMQKLGLDSKHQLIQYAIKNRYL 210 >gi|255600849|ref|XP_002537550.1| conserved hypothetical protein [Ricinus communis] gi|223515958|gb|EEF24832.1| conserved hypothetical protein [Ricinus communis] Length = 219 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 43/124 (34%), Gaps = 10/124 (8%) Query: 114 PFAGIAFPVRLGFH--KNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLEL------- 163 + + + VR YV F + ++ I L Sbjct: 85 MHSLMVYGVRDTRGKADCIYVFFDRTKEFTVPDQMLGMIMPHLDAAIRRIGHLTPVVKDE 144 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S A L++RE L G T+ EI L +S +TV +L KLD R Q Sbjct: 145 DLLDSMAQGGLSDREQEILHWVRSGKTNLEIGMILNISANTVKNHLKRIFQKLDVSCRAQ 204 Query: 224 AIAK 227 A+AK Sbjct: 205 AVAK 208 >gi|172038808|ref|YP_001805309.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700262|gb|ACB53243.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 218 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L L G T+ EIA+ L ++ TV ++ + KLD +R QA A+R Sbjct: 157 ANLLTQREQEILALIAAGKTNSEIAQVLHIATGTVRVHVHAILQKLDVRDRTQAAILALR 216 Query: 231 F 231 Sbjct: 217 M 217 >gi|168484073|ref|ZP_02709025.1| DNA-binding response regulator [Streptococcus pneumoniae CDC1873-00] gi|172042589|gb|EDT50635.1| DNA-binding response regulator [Streptococcus pneumoniae CDC1873-00] gi|332199429|gb|EGJ13506.1| response regulator [Streptococcus pneumoniae GA47368] Length = 199 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ H EL + + LTE+E + L+ G++++EI +KL LS Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIVQGFSNQEIVDKLYLSN 167 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ + KLDA NR +A A G++ Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|153801325|ref|ZP_01955911.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|255745673|ref|ZP_05419621.1| DNA-binding response regulator LuxR family [Vibrio cholera CIRS 101] gi|262159050|ref|ZP_06030162.1| DNA-binding response regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|262169409|ref|ZP_06037101.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC27] gi|262190004|ref|ZP_06048308.1| DNA-binding response regulator LuxR family [Vibrio cholerae CT 5369-93] gi|124123150|gb|EAY41893.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|255736748|gb|EET92145.1| DNA-binding response regulator LuxR family [Vibrio cholera CIRS 101] gi|262022222|gb|EEY40931.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC27] gi|262029235|gb|EEY47887.1| DNA-binding response regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|262034112|gb|EEY52548.1| DNA-binding response regulator LuxR family [Vibrio cholerae CT 5369-93] gi|327483964|gb|AEA78371.1| DNA-binding response regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 212 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 150 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 209 Query: 233 YI 234 + Sbjct: 210 LL 211 >gi|157368863|ref|YP_001476852.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157320627|gb|ABV39724.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 215 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 3/131 (2%) Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155 I ++ +R V + Sbjct: 81 AAINNNRHYYHDFMLPNNMRDMTEIFIRQRKRIVAGVSLIR---DTPFTELERGRLRAVM 137 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + A+ LT +E + + +G +++ IA KLG+S+ TV ++ + K Sbjct: 138 PLIELATRDLLPEGEAQLLTAKEQEIVNMVREGASNKRIALKLGISLSTVKTHMRNIFAK 197 Query: 216 LDAVNRIQAIA 226 + VNR + +A Sbjct: 198 TEVVNRTELVA 208 >gi|325830372|ref|ZP_08163829.1| response regulator receiver domain protein [Eggerthella sp. HGA1] gi|325487839|gb|EGC90277.1| response regulator receiver domain protein [Eggerthella sp. HGA1] Length = 213 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173 +RLG + V+ +V+ L + + A N Sbjct: 94 LRLGAKGYLIKQEAATIAPALRTVMAGQSVLGGEVLDRMDVLMSRGPACAENAPGGEMRS 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE++ ++L +G ++EIA +L LS TV ++ + KLD NR Q + + R Sbjct: 154 GLTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211 >gi|300933646|ref|ZP_07148902.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Corynebacterium resistens DSM 45100] Length = 201 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 8/155 (5%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-------EFL 139 + + E ++ + + + L + + + Sbjct: 48 VDVAILDIEMPGKNGIEATREIAESQLNCRCLIVTTFDRPGFLRQALEAGASGYVVKDTP 107 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + A +V+ L S + LT RE + G +S IA+ L Sbjct: 108 AAQLAESVRRVHAGARVVDSALATEALYSPPS-PLTPREVDVCREVLTGKSSANIAKALH 166 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV ++ SA K A NR A A G++ Sbjct: 167 LSEGTVRNHVSSAITKTQASNRYDAARIARDRGWL 201 >gi|209964709|ref|YP_002297624.1| nitrate/nitrite response regulator protein NarL [Rhodospirillum centenum SW] gi|209958175|gb|ACI98811.1| nitrate/nitrite response regulator protein NarL [Rhodospirillum centenum SW] Length = 228 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 17/159 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146 + E + RL L + L + + L+++ + Sbjct: 55 LDLVNGGEEEAEAMRRLRQALPNSRMVVLTTDLCTRRLSNALEAGADGYLMKDLSSDALT 114 Query: 147 --IEAHGACYQVITDFLE--LFKKR--------SSAARNLTERETSCLQLAGDGYTSEEI 194 + +V L L R + + L++RE L+ +G +++ I Sbjct: 115 QSLRLVMMGEKVFPTHLAALLISGRVNGNGLEMPVSRKGLSQREIQILRCLLNGDSNKMI 174 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A L ++ TV +L S K++A NR QA A+ G Sbjct: 175 ANHLNITEATVKVHLKSLLRKINASNRTQAAIWALNNGI 213 >gi|312141711|ref|YP_004009047.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311891050|emb|CBH50369.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 257 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 56/220 (25%), Gaps = 8/220 (3%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ E R+ + A + + D + + + Sbjct: 29 RTVPEFRTRIAAAMTDVFPVRVATCFVGDSYDSQFTDPDAALVGGHGWERNRPVYQEKWA 88 Query: 72 YGD----DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + + + + G + A + L Sbjct: 89 RHDIFATPEARRRLEHNR--VASLADLQDLPAGAAAYVRDYLGAWGLRSVSAMHLDLPGR 146 Query: 128 KNGYV-IFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLA 185 V +F + L + + L R LTER+ +L Sbjct: 147 ARALVGLFDGDDSALGTRDLATLRLLARHLSALTRNLDTAPRRDPYAALTERQRDVARLV 206 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 DG ++ IA +L L+ TV Y+ +R Q Sbjct: 207 ADGMSNAAIARRLMLAEDTVKKYVSRILAATGCASRTQLA 246 >gi|327188744|gb|EGE55942.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 207 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ + L +S +LT RE + L G +++ I +L L TV ++ Sbjct: 130 MSTKVMENSLH---DAASDKTSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 186 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL NR +A + Sbjct: 187 ILSKLGVSNRTEAALQWRER 206 >gi|304398340|ref|ZP_07380214.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304354206|gb|EFM18579.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 209 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 11/134 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----------ACYQV 156 L + + V ++ L + E + Sbjct: 73 LRHEGISSRILVLTVSDARSDIFAMVDAGADGYLLKDSEPEILLGHILQASRGEKVFSEG 132 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L+ + + R LT+RE LQ G +++EIA L +S TV ++ + KL Sbjct: 133 VASYLDNRQHSADPLRLLTDRECDVLQEVARGLSNKEIAAILHISEETVKVHIRNLLRKL 192 Query: 217 DAVNRIQAIAKAIR 230 D +R+ A + Sbjct: 193 DVRSRVAATVMWLE 206 >gi|298244409|ref|ZP_06968215.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551890|gb|EFH85755.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L T+ EI E+L LS TV ++ + KL R QAI +A G Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLVLSPKTVRNHVSNIFSKLQVATRAQAIIRAREAG 217 Query: 233 Y 233 + Sbjct: 218 W 218 >gi|302549505|ref|ZP_07301847.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467123|gb|EFL30216.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 42/84 (50%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V + R+ +R +T+RE L+L +G+TS++IA+ L +S TV + Sbjct: 134 AVNALVRDFLDRAREGRALPSRAITDREEEILKLVAEGHTSQQIADLLVISPKTVERHRA 193 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 194 NLLQKLGLKDRLELTRYAIRVGLI 217 >gi|320162117|ref|YP_004175342.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995971|dbj|BAJ64742.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 212 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY+ + L + + V + ++ LT RE L Sbjct: 98 AGARGYLWKDAPDEELIRAIRVAMSGEIYLPPGVSMEHIQALIAAQPPVERLTAREKQVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T++ IA +LG+S TV + KLD + A+R G I Sbjct: 158 ALLASGLTTQAIAVRLGVSPKTVETHRSHVMSKLDLYDIASLTRFALRHGLI 209 >gi|300784836|ref|YP_003765127.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794350|gb|ADJ44725.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 212 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ + +R + LT RE ++ G T++EI L +S+ TV ++ Sbjct: 127 AITTRLLAHYARRAPRRVTPPESPLTPRELDVVKAVARGETNDEICRSLVVSMPTVKTHI 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 G+A KL NR + A G + Sbjct: 187 GAAKRKLGVRNRTEIAIWAWESGLV 211 >gi|293374136|ref|ZP_06620470.1| transcriptional regulator, LuxR family [Turicibacter sanguinis PC909] gi|325837421|ref|ZP_08166403.1| spore germination protein GerE [Turicibacter sp. HGF1] gi|292647239|gb|EFF65215.1| transcriptional regulator, LuxR family [Turicibacter sanguinis PC909] gi|325490953|gb|EGC93251.1| spore germination protein GerE [Turicibacter sp. HGF1] Length = 70 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L T+ EIAE+L +S TV ++ + +KL+ R QAI + ++ G Sbjct: 8 LTKREQEIFNLLVRNMTTSEIAEELKISEKTVRNHISNVILKLNVKGRSQAIIELLKLGV 67 Query: 234 I 234 I Sbjct: 68 I 68 >gi|288936699|ref|YP_003440758.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|288891408|gb|ADC59726.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22] Length = 227 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 12/220 (5%) Query: 10 KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K+S + R L I I + Y +N+ L + LHN ++ Sbjct: 6 KASRNDAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPESYILHNISDNTHQQYLE- 59 Query: 69 IETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D L HF+ + + + + + +R Sbjct: 60 NFQPLDPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERR 116 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + ++E A V + ++ LT +E + + + Sbjct: 117 IIAGISLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEDDDLPAILTAKEREIVGMVRE 175 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G +++ IA +L +S+ TV +L + K + VNR + +++ Sbjct: 176 GASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215 >gi|302560744|ref|ZP_07313086.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302478362|gb|EFL41455.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 40/106 (37%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + A + ++ + ++ L++RE L L G Sbjct: 110 RPAELLDAIRTVAAGDALLSPGPTARLIERFLRTPPAPVTAGPECLSDREREVLALVARG 169 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA+ LGLS T ++ +L A +R Q + A G + Sbjct: 170 LNNTEIADSLGLSPLTAKTHVSRIMGRLGARDRAQLVIVAYESGLV 215 >gi|297197731|ref|ZP_06915128.1| response regulatory protein [Streptomyces sviceus ATCC 29083] gi|197716240|gb|EDY60274.1| response regulatory protein [Streptomyces sviceus ATCC 29083] Length = 215 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 39/109 (35%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S L+ RE L Sbjct: 106 AGAIGYLLKAEQPEELFSAIRDAASGRGALSAPVADRLLTRLRSPRPALSAREHEILAQL 165 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A A + Sbjct: 166 ARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVAKERRLL 214 >gi|148546040|ref|YP_001266142.1| regulatory protein LuxR [Pseudomonas putida F1] gi|148510098|gb|ABQ76958.1| regulatory protein, LuxR [Pseudomonas putida F1] Length = 905 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A +++ + + L+ RE + L+L G ++++I+E+L +S+HTV Sbjct: 818 AACPVQAELLKHLPPVPIASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKT 877 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL R QA+AKA G + Sbjct: 878 HASHINSKLGVERRTQAVAKAKSLGLL 904 >gi|85059257|ref|YP_454959.1| putative two-component response regulator [Sodalis glossinidius str. 'morsitans'] gi|84779777|dbj|BAE74554.1| putative two-component response regulator [Sodalis glossinidius str. 'morsitans'] Length = 211 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L DGYT+ IAE+L +SV TV + + KL+ + + + R Sbjct: 148 ELLTPRERQILKLIADGYTNRLIAEQLCISVKTVETHRLNIMRKLNVHKVTELLNCSRRL 207 Query: 232 GY 233 G Sbjct: 208 GL 209 >gi|332528686|ref|ZP_08404663.1| two-component response regulator [Hylemonella gracilis ATCC 19624] gi|332041752|gb|EGI78101.1| two-component response regulator [Hylemonella gracilis ATCC 19624] Length = 221 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+R+ L G +++EIA + L+ +TV ++ + L+ ++R QAI +A Sbjct: 157 HGLTKRQHQVLARLCQGLSNKEIARDMNLTHNTVKTHISAIFKALNVMSRTQAIVEARLR 216 Query: 232 GYI 234 G + Sbjct: 217 GIV 219 >gi|315180008|gb|ADT86922.1| transcriptional regulator [Vibrio furnissii NCTC 11218] Length = 212 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G++S++IA L +S TV + + KLD + + A + G Sbjct: 150 PLSRREEAVLKLVAQGHSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAHYASQRG 209 Query: 233 YI 234 + Sbjct: 210 LL 211 >gi|296332888|ref|ZP_06875348.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673234|ref|YP_003864906.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150168|gb|EFG91057.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411478|gb|ADM36597.1| two-component response regulator (paired with YdfH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 213 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ LE KK+SS + LTE+E L+ G+ S+ IA LG+S TV + L S Sbjct: 128 ILKRLQEIRLEQMKKQSSDTQ-LTEKEVIVLKAIAKGFKSKAIAFDLGVSERTVKSRLTS 186 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R +A+ A++ G + Sbjct: 187 IYNKLGANSRTEAVTIAMQRGIL 209 >gi|284992805|ref|YP_003411359.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066050|gb|ADB76988.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 218 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 6/160 (3%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 L + L + W ++ E + + + ++ Sbjct: 64 VLETLRAELPSVRWLALSVSDAAEDVIAVI-----RAGARGYVTKSISGPDLRDAVARVA 118 Query: 136 SEFLMLANEVI-IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + + L+ RE +QL GYT EI Sbjct: 119 DGDVVFSPRLAGFVLDAFAATTPSAPQPEDPATDPGLDLLSAREREVMQLLARGYTYREI 178 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +SV TV ++ + KL NR + A + Sbjct: 179 GSRLFISVKTVESHASNVLRKLQLSNRNELTRWAATNRLL 218 >gi|225387858|ref|ZP_03757622.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme DSM 15981] gi|225046041|gb|EEG56287.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme DSM 15981] Length = 210 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + + A NLT+RE ++L G + EIA L L+ TV L KL Sbjct: 133 LRETASAKPEPGPGAFNLTDRERDIVRLVAQGMDNREIARTLYLAEGTVRNNLSRVLEKL 192 Query: 217 DAVNRIQAIAKAIRFGY 233 + +R Q A++ Sbjct: 193 ELKDRTQLAVFAVKNNL 209 >gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 307 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 9/124 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 + L P + + F+ + A+E + + L Sbjct: 186 FMSERARLGPARDNLVSIS--NGGQAALQFSFLGAIGADEYLFRLTATNQRADDGVLRQH 243 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT+RE+ L G ++ +I E LGLS TVN +L VKL NR A Sbjct: 244 F-------SLTQRESEVLLWIAKGKSNRDIGEILGLSARTVNKHLEQIYVKLGVENRASA 296 Query: 225 IAKA 228 KA Sbjct: 297 AVKA 300 >gi|184201279|ref|YP_001855486.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183581509|dbj|BAG29980.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 207 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + + A +L+ RE L+ G ++ +A+ L +S TV +L KL N Sbjct: 134 ARLMTQVRTPAASLSPREIEILRGLATGASNRALAKSLFISEATVKTHLVHIYDKLGVDN 193 Query: 221 RIQAIAKAIRFGYI 234 R A+++A I Sbjct: 194 RTAAVSRAREEHVI 207 >gi|317483987|ref|ZP_07942923.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924776|gb|EFV45926.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 218 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ +S LT+RE L+L +G +++EIA +L ++ TV + + KL N + Sbjct: 144 EEIASPLAQLTQREREILKLVAEGCSNKEIAARLSVAEKTVVTHRTNFMRKLGLRNVREV 203 Query: 225 IAKAIRFGYI 234 A+ G I Sbjct: 204 TMFALECGLI 213 >gi|300934384|ref|ZP_07149640.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Corynebacterium resistens DSM 45100] Length = 241 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L G + EIAEKL +S+ TV ++ KL A NR+Q IA A+ Sbjct: 182 EALSPREKEIALLIAQGLGNAEIAEKLFISMPTVKTHVARILEKLQASNRVQ-IAIAVIR 240 Query: 232 G 232 G Sbjct: 241 G 241 >gi|205374169|ref|ZP_03226968.1| hypothetical protein Bcoam_13554 [Bacillus coahuilensis m4-4] Length = 199 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S LA+ + G EL + + LTERE L L Sbjct: 94 AGVMGYLLKDSPSEELASSIRRIMQGKRIYA----PELIEDVYTEQNPLTEREIEVLGLV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG + EIA +L + TV Y+ + KL+ NRI+AI ++ G+ Sbjct: 150 ADGKNTNEIANELSIKAGTVRNYISAILDKLEVKNRIEAITQSKEKGW 197 >gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 229 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A +++ + + + T RE S L L G ++EIA +L SV V Y+ Sbjct: 146 AIREMLAQRGNISQTPPPIRIDFTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSR 205 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 K +R + + A+ G Sbjct: 206 LFSKTGTNSRTELVRYALEHGL 227 >gi|94984423|ref|YP_603787.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554704|gb|ABF44618.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 214 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + + + E +++A A + + + S +L ERET L+L G Sbjct: 106 DAATLLDAIRRVASGEALLDADLAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQG 165 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++++IA +L +S TV L KL NR QA AIR G Sbjct: 166 FSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|322386825|ref|ZP_08060449.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321269107|gb|EFX52043.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 199 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L+ +E L+ A G +++EIAEKL LS T+ Y+ + KL A NR Sbjct: 127 ELMEVLMTHKNPLSHQELLVLEAAATGLSNKEIAEKLYLSNGTIRNYMSTILTKLAADNR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ A G+I Sbjct: 187 TEAVRIAQEQGWI 199 >gi|289645062|ref|ZP_06477093.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505136|gb|EFD26204.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 216 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 38/80 (47%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +VI F + LT RE + L G G +++EIA++L +S T ++ V Sbjct: 134 RVIDAFARRPAVHTPDLSGLTAREREVMGLVGRGLSNDEIAQRLFISPATARTHVSRVMV 193 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A +R Q A + G + Sbjct: 194 KLGARDRAQLAVLANQAGMV 213 >gi|209551570|ref|YP_002283487.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537326|gb|ACI57261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 260 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + +LT RE L L G ++ IA+KL LS +TV ++ + K++ NR +A + Sbjct: 182 RRDSISSLTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKMNVRNRTEAAS 241 Query: 227 K 227 + Sbjct: 242 R 242 >gi|167640433|ref|ZP_02398697.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|254735503|ref|ZP_05193211.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|167511653|gb|EDR87035.1| DNA-binding response regulator [Bacillus anthracis str. A0193] Length = 200 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|219850206|ref|YP_002464639.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544465|gb|ACL26203.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 219 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 31/76 (40%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D L + LT RE L L G + IA KL L+ TV L KL Sbjct: 138 DLLRRNDNAPALHEVLTPRERDILALVAQGDDNRAIALKLSLAEKTVGNRLSEIFQKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 NR QA A++ G + Sbjct: 198 SNRTQAAIVAVQRGLV 213 >gi|331695587|ref|YP_004331826.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950276|gb|AEA23973.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 219 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Query: 151 GACYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 G V+ ++ L + + A LTERET L+L G T+ I E+LGLS T Sbjct: 128 GLAGLVLGEYRRLADEPARRPAGDPAVPALTERETGVLRLVAKGLTARAIGERLGLSHRT 187 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V +++ + KL NR Q + AI G Sbjct: 188 VESHVQNTLRKLQLHNRAQLVRYAIEQGL 216 >gi|319948854|ref|ZP_08022967.1| regulatory protein, LuxR [Dietzia cinnamea P4] gi|319437456|gb|EFV92463.1| regulatory protein, LuxR [Dietzia cinnamea P4] Length = 203 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 43/112 (38%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V G E L+ E I + L+ RE Sbjct: 88 VAAGARGFLAKSLVGEELVAGIERIAAGETLTAPARDGDTGPHAVWPAGDSGLSPREAEM 147 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G ++E+IA LS++TV +Y+ A K+ R QA+A A++ G+ Sbjct: 148 LALIAQGLSNEDIATACYLSINTVKSYIRDAYRKIGVTTRPQAVAWALKNGF 199 >gi|320011210|gb|ADW06060.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 229 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G+++++IA++L +S TV ++ A KL A +R Q + Sbjct: 158 AERLAALTGREREVLVQVAGGHSNDQIADRLVVSPLTVKTHVNRAMAKLGARDRAQLVVI 217 Query: 228 AIRFGYI 234 A G + Sbjct: 218 AYESGLV 224 >gi|229156784|ref|ZP_04284871.1| Two-component protein Kinase [Bacillus cereus ATCC 4342] gi|228626704|gb|EEK83444.1| Two-component protein Kinase [Bacillus cereus ATCC 4342] Length = 595 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKEPPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|226941833|ref|YP_002796907.1| two-component response regulator [Laribacter hongkongensis HLHK9] gi|226716760|gb|ACO75898.1| Probable two-component response regulator [Laribacter hongkongensis HLHK9] Length = 196 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 8/153 (5%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + L + + I + + ++ G + P + Sbjct: 50 PGLAACDWPGLCLHGRVIALSSAPSNPEGVAWITRGAAGYAHAYSTP------DLLKQVV 103 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + C QV LTERE +Q G ++EI Sbjct: 104 ATVASGASWIGRDLLGLLCMQVGNHLSR--DGIDGPGALLTEREREVVQALRRGLANKEI 161 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A +L +S +TV +L S KL +R+Q + K Sbjct: 162 ARELDISENTVKKHLSSVFQKLGVEDRLQLLIK 194 >gi|225867334|ref|YP_002752712.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225790979|gb|ACO31196.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 200 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|118480385|ref|YP_897536.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196045516|ref|ZP_03112747.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|118419610|gb|ABK88029.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196023723|gb|EDX62399.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 200 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|47569776|ref|ZP_00240448.1| two-component response regulator yocG [Bacillus cereus G9241] gi|47553572|gb|EAL11951.1| two-component response regulator yocG [Bacillus cereus G9241] Length = 189 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|308187717|ref|YP_003931848.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] gi|308058227|gb|ADO10399.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] Length = 209 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 11/134 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----------ACYQV 156 L + + V ++ L + E + Sbjct: 73 LRHEGISSRILVLTVSDARSDIFAMVDAGADGYLLKDSEPEILLGHILQASQGEKVFSEG 132 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L + + R LT RE LQ G +++EIA L +S TV ++ + KL Sbjct: 133 VARYLANRQHSADPLRQLTGRECDVLQEVARGLSNKEIAANLHISEETVKVHIRNLLRKL 192 Query: 217 DAVNRIQAIAKAIR 230 D +R+ A + Sbjct: 193 DVRSRVAATVMWLE 206 >gi|288919771|ref|ZP_06414097.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288348871|gb|EFC83122.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 135 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 32/69 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L A L +RE LQL DG T+ +I +LGLS TV Y+ S KL Sbjct: 60 ERLRDGPHEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGL 119 Query: 219 VNRIQAIAK 227 +R QA Sbjct: 120 ASRTQAAVY 128 >gi|291614188|ref|YP_003524345.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584300|gb|ADE11958.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 235 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 19/160 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + +L + + G I +A E ++ Sbjct: 55 VDLRMKPMDGLAMIEQLRKEGCDIPAVLLTMSDSEVDLGNAIRAGVRGYLLKDMAPEEVV 114 Query: 148 EAHGACYQ-----------VITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEE 193 +A + D L + +L TERE LQL G +++ Sbjct: 115 DAIRRVAAGELVVAPTMTVKMIDMLRGDQSGQEPKNSLKLLTEREREILQLLSRGESNKA 174 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI-QAIAKAIRFG 232 IA L +S TV ++ KL+ +R+ A+ A G Sbjct: 175 IALTLSISYDTVKQHVRHILNKLNLSSRVKAAVLFAKEQG 214 >gi|65317330|ref|ZP_00390289.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] Length = 200 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|329939332|ref|ZP_08288668.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329301561|gb|EGG45455.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSC 181 ++A+ + A ++IT+F L + A LTERET Sbjct: 115 DASARQLAEGVRVVASGEALLAPSVTRRLITEFSRLAEAPRLPAAAPGAYGELTERETEV 174 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA +L ++ T+ ++ VKL +R QA A + Sbjct: 175 LILIAQGLSNAEIAGRLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 227 >gi|297161527|gb|ADI11239.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 43/97 (44%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L+ ++ ++ + + L+ERE L+L G ++ EIA++ Sbjct: 125 RLVARSDSLLFPAAVRALAAAYATGRDGQAQALRDRLSEREAEVLRLMTTGLSNAEIADR 184 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L ++ TV ++ + KL +R QA+ A G++ Sbjct: 185 LTVAPATVKTHVATVLAKLGVRDRTQAVIAAYECGFV 221 >gi|261404049|ref|YP_003240290.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280512|gb|ACX62483.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 203 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 47/98 (47%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + I + ++ L + A LTERE L+LA DG +S +IA Sbjct: 106 DEPSERLAEAIRRVMGGRREVSPELVFGTLSGAGANPLTEREREVLRLAADGNSSNDIAA 165 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KL LS TV Y+ KL+A NRI+AI+ A G+I Sbjct: 166 KLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKGWI 203 >gi|226308907|ref|YP_002768867.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226188024|dbj|BAH36128.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 209 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 9/158 (5%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE----F 138 P + + + RL + + F + Sbjct: 48 SASPDLVMMDLDMGTGMHGAEAIKRLRSDGVDVPVLVFTTYDTDADVVRAVDAGAIGYLL 107 Query: 139 LMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + I A + L ++ LT RE+ L L +G T+ E Sbjct: 108 KDSTPDEIFGAVRGAVAGRSVLSPTVASRLVQQMQRPQEALTARESELLSLLAEGMTNRE 167 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + + L +S TV +LG KL R A++ A+R Sbjct: 168 LGKALFISEATVKTHLGHIYAKLGVETRSAAVSVALRR 205 >gi|295838502|ref|ZP_06825435.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197699551|gb|EDY46484.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 234 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 20/156 (12%) Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG 151 +V++ +L + +E +A V VI + ++ A Sbjct: 82 SVLQRCAELVMDVEKP---VRFLALSVSDAAEDVIGVIRAGSRGYVTKAINGTELVAAIH 138 Query: 152 A--------CYQVITDFLELFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKL 198 ++ L+ F + LT+RE L+L G++ +EIA++L Sbjct: 139 RVKEGDAVFSPRLAGFVLDAFSNNTVPPVDEELDKLTQRERDVLRLIARGHSYKEIAKEL 198 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +SV TV +++ + KL NR + A + Sbjct: 199 FISVKTVESHVSAVLRKLQLSNRHELTRWAAARRLV 234 >gi|118590980|ref|ZP_01548380.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118436502|gb|EAV43143.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 217 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + LT+RE L L G +++EIAE LG+S+ TV+ + S KL+ + Sbjct: 142 LEETPAPPV--LTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLMQKLNVHSVP 199 Query: 223 QAIAKAIRFGYI 234 Q +AKA++ G I Sbjct: 200 QLMAKALKEGMI 211 >gi|113970560|ref|YP_734353.1| transcriptional regulator NarL [Shewanella sp. MR-4] gi|113885244|gb|ABI39296.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 221 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 156 VITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 I L + + A +LT RE ++L G +++ IA KL ++ TV ++ Sbjct: 138 AIAPILATGLRHNPPATKRDIESLTAREKDIIRLVSQGLSNKMIARKLIITEGTVKVHVK 197 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL +R++A ++ Sbjct: 198 NLLKKLSFKSRVEATVWILQENI 220 >gi|114047794|ref|YP_738344.1| transcriptional regulator NarL [Shewanella sp. MR-7] gi|113889236|gb|ABI43287.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 221 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 156 VITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 I L + + A +LT RE ++L G +++ IA KL ++ TV ++ Sbjct: 138 AIAPILATGLRHNPPATKRDIESLTAREKDIIRLVSQGLSNKMIARKLIITEGTVKVHVK 197 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL +R++A ++ Sbjct: 198 NLLKKLSFKSRVEATVWILQENI 220 >gi|126698866|ref|YP_001087763.1| two-component response regulator [Clostridium difficile 630] gi|255100287|ref|ZP_05329264.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306226|ref|ZP_05350398.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|115250303|emb|CAJ68125.1| Two-component response regulator [Clostridium difficile] Length = 215 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLTE+E S ++L +G ++EI+++L LS T+ + + KL+ +R Q A + Sbjct: 152 NLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILAKLELRDRTQLAIFAFKNK 211 Query: 233 YI 234 + Sbjct: 212 IV 213 >gi|319939711|ref|ZP_08014069.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811129|gb|EFW07438.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 199 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+ +E LQ A G +S+EIA+KL LS T+ Y+ S KL A NR Sbjct: 127 ELMEAMMTSKNPLSNQEILVLQAAARGLSSKEIAQKLYLSNGTIRNYMSSILTKLTAENR 186 Query: 222 IQAIAKAIRFGYI 234 ++A+ A G+I Sbjct: 187 LEAVRIAQENGWI 199 >gi|318605143|emb|CBY26641.1| transcriptional regulatory protein UhpA [Yersinia enterocolitica subsp. palearctica Y11] Length = 209 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + ES L RL + F I + G + ++ Sbjct: 48 VHVAVMDISMPDESGLSLLKRLRQKMPQFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107 Query: 141 LAN--EVIIEAHGACYQVITDFLEL---FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + HG + D L ++ LT RE QL +G + + IA Sbjct: 108 PDELVQALRTVHGGGLYLCADALRALRHMPQQPQQLAILTPREKDVFQLLINGISVKSIA 167 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+L LS TV+ + + KL+ ++ + A++ + Sbjct: 168 EQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206 >gi|300789707|ref|YP_003769998.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799221|gb|ADJ49596.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 221 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAE 196 ++A + A ++I +F + + A LT+RE L L G +++EIA Sbjct: 117 RVVARGDALLAPSITRRLIAEFAARGTRPAASPALDRLTDREREVLSLVAAGLSNDEIAR 176 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L LS T ++ K +R Q + A G Sbjct: 177 ELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESG 212 >gi|295395667|ref|ZP_06805859.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294971483|gb|EFG47366.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 223 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET + L DG + +IAE LS TV ++ K++ +R +A++ ++ Sbjct: 165 GLSRRETEVMVLVADGLNNRQIAESFFLSEKTVKNHINRIFAKMNVTSRAEAVSIWLKR 223 >gi|291301282|ref|YP_003512560.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570502|gb|ADD43467.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 206 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + LT RE L+ Sbjct: 96 AGARGYLLKAGPPEELFTAIRAAARGEPVLSPAVADSMMRHLRQPRTTLTSREVEILRAL 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA++L ++ TV +L KLD +R A+A A+ I Sbjct: 156 ARGDSNRAIAKRLFITEATVKTHLVHIYAKLDVDSRTAAVAAALERRLI 204 >gi|183601991|ref|ZP_02963360.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219682902|ref|YP_002469285.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|241190478|ref|YP_002967872.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195884|ref|YP_002969439.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218876|gb|EDT89518.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219620552|gb|ACL28709.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|240248870|gb|ACS45810.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250438|gb|ACS47377.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178205|gb|ADC85451.1| Transcriptional regulatory protein [Bifidobacterium animalis subsp. lactis BB-12] gi|295793465|gb|ADG33000.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 236 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + +L+ RE ++L GYT +E+ +L +SV TV ++ + KL NR + A Sbjct: 171 AELDSLSTREQEVMRLIARGYTYKEVGAELFISVKTVETHVSNVLRKLQLSNRNELTLWA 230 Query: 229 IRFGYI 234 + Sbjct: 231 ADRHIV 236 >gi|42524246|ref|NP_969626.1| two-component response regulator-like protein [Bdellovibrio bacteriovorus HD100] gi|39576454|emb|CAE80619.1| two-component response regulator homolog [Bdellovibrio bacteriovorus HD100] Length = 226 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +++ G T++E+A L S HT+ + + KL+ N ++ A++ Sbjct: 166 LTPRELEVVRMIAQGKTNKEVAACLECSEHTIKTHKTNVMRKLNLSNAVEISVWALKRNL 225 >gi|298247435|ref|ZP_06971240.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550094|gb|EFH83960.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +L V+ Q L RSS L+ERE L+ G Sbjct: 130 QAIRSAARGETLLQPGVVARLLSRASQERRPSL---GTRSSGEGELSERELEVLRKVASG 186 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+EIA +LG+S+ TV A+L S KL +R A+A A+ G + Sbjct: 187 ERSKEIAAQLGISLRTVGAHLTSIYTKLGVDSRTSAVAVALERGLL 232 >gi|295676073|ref|YP_003604597.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] gi|295435916|gb|ADG15086.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 293 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L+ L ++ + +A + L P ++ + N+ Sbjct: 10 AERRDGLKALLRQIDRLARFTEADEWRLLERPFKRYRPD--LVVIDWENWMS--VAQVRA 65 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 L+ + D + G LP + +++ +E V+ + + + A + + Sbjct: 66 LLSHFPDLRISVLTDGTLPALVRALMDEGVLGVVPRDTDPCL---IVRALEMVLLGGHYV 122 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G + L + I D +R+ + L+ R+ ++ Sbjct: 123 PPGALAI---DPPLPTDTAIRT--------FDEESPPPRRNKLSSGLSPRQEQIMRCVHM 171 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ IA LG+S TV +L S +L A NR A+ A+ G++ Sbjct: 172 GSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216 >gi|297566766|ref|YP_003685738.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851215|gb|ADH64230.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 192 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 1/137 (0%) Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT 158 +S +AG+ V + + +++ Sbjct: 56 PKRDGISACRALREGGYAGLIAMVTTFHEPALVHQAATAGADAYWSKEMPPDELAHRLRR 115 Query: 159 DFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + R+ LT RE + L+L G +++E+A++LGLS TV +L KL Sbjct: 116 LQKGLEPRLRAPDLPELTPREKTVLRLLVQGLSTKEMAQELGLSPDTVKDHLERLYGKLS 175 Query: 218 AVNRIQAIAKAIRFGYI 234 A NR++A+ +A G++ Sbjct: 176 ARNRVEALERARGLGFL 192 >gi|71907204|ref|YP_284791.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71846825|gb|AAZ46321.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 218 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELF----KKRSSAARNLTERET 179 +GY+ S +LA+ + + Q + + L L + + LT+RE Sbjct: 96 AGASGYLCKDSAETLLADAIRKVADGGLFINQAVAEKLTLQILHGRDTDAPHTGLTDREH 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G EI +L LSV TV+ + S K++ N + + AI+ I Sbjct: 156 QIFLMILQGLGVTEIGRQLNLSVKTVSTHKASILAKMNLRNSAELVRYAIQHRLI 210 >gi|21222754|ref|NP_628533.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|10129764|emb|CAC08319.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 226 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 39/103 (37%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + + + A + R +LT RE L L G G + Sbjct: 123 AIRAAGAGQSVLDREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLS 182 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + IAEKL +S TV ++ + K +R A+ +AI G Sbjct: 183 NRGIAEKLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225 >gi|332716106|ref|YP_004443572.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325062791|gb|ADY66481.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 256 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D L + K +A LT RE L L G ++ IA++L LS +TV ++ + K++ Sbjct: 175 ADALAVSKSEMAA---LTTREVQILDLLCKGTQNKIIADRLHLSENTVKVHVRNIYKKMN 231 Query: 218 AVNRIQAIAK 227 NR +A ++ Sbjct: 232 VRNRTEAASR 241 >gi|323154780|gb|EFZ40977.1| bacterial regulatory s, luxR family protein [Escherichia coli EPECa14] Length = 123 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT E+ LQL DG T++EIA L LS TV + + KLD + I+ I Sbjct: 54 RYSSDNQLTNSESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 113 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 114 TALRMG-VC 121 >gi|322377956|ref|ZP_08052444.1| putative DNA-binding response regulator VraR [Streptococcus sp. M334] gi|321281132|gb|EFX58144.1| putative DNA-binding response regulator VraR [Streptococcus sp. M334] Length = 201 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 122 VRLGFHKNGYVIFTSEFLM-LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 + G F + L + I A VI D L L K+ + LT+ E S Sbjct: 90 LHKRAMDFGIQAFLPKESSYLDVKSAIYAVYKGNHVIPDGL-LEKQEN---NLLTDMELS 145 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L Y++E+IA L +S TV+ ++ + KL +R+ A+ +AIR + Sbjct: 146 VLELIVKEYSNEKIANSLFVSRRTVDTHVSNICSKLGVTSRVGAVREAIRLNLV 199 >gi|302559849|ref|ZP_07312191.1| LuxR family DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477467|gb|EFL40560.1| LuxR family DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 230 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 41/84 (48%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + R+ A+ +T+RE L+L +G+TS++IA L +S TV + Sbjct: 145 AVNALIHNYLDLAREGRALPAKAITDREEEILKLVAEGHTSQQIAGLLVISPKTVERHRA 204 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 205 NLLAKLGLRDRLELTRYAIRVGLI 228 >gi|302529018|ref|ZP_07281360.1| response regulator [Streptomyces sp. AA4] gi|302437913|gb|EFL09729.1| response regulator [Streptomyces sp. AA4] Length = 220 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G + EIA +L +S TV ++ K R QA+ A + Sbjct: 157 DGLTAREVDVLKLVAGGRRNREIARELQVSEATVKTHVNRIFAKTGCGTRAQAVRYAHQH 216 Query: 232 GY 233 GY Sbjct: 217 GY 218 >gi|229176028|ref|ZP_04303523.1| Two-component response regulator [Bacillus cereus MM3] gi|228607460|gb|EEK64787.1| Two-component response regulator [Bacillus cereus MM3] Length = 189 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|226357105|ref|YP_002786845.1| response regulator NarL [Deinococcus deserti VCD115] Length = 216 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 46/95 (48%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A E +++A A + + + S +L ERET L+L G+++++IA +L Sbjct: 118 RVAAGEALLDADMAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQGFSNQDIALRL 177 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +S TV L KL NR QA AIR G Sbjct: 178 DISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 212 >gi|329928019|ref|ZP_08282023.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] gi|328938123|gb|EGG34520.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] Length = 191 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 47/98 (47%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + I + ++ L + A LTERE L+LA DG +S +IA Sbjct: 94 DEPSERLAEAIRRVMGGRREVSPELVFGTLSGAGANPLTEREREVLRLAADGNSSNDIAA 153 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KL LS TV Y+ KL+A NRI+AI+ A G+I Sbjct: 154 KLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKGWI 191 >gi|148272422|ref|YP_001221983.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830352|emb|CAN01286.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 224 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +A + A ++ ++ L+ RET L L G T+ IA +L Sbjct: 120 RAVARGEVALAPAIAAALVRQVGRPAAGPATPTPTLSPRETEVLALVAAGRTNARIAREL 179 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV +L KL +R +A+ A+ G + Sbjct: 180 HVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215 >gi|13472199|ref|NP_103766.1| response regulatory protein [Mesorhizobium loti MAFF303099] gi|14022944|dbj|BAB49552.1| respose regulatory protein [Mesorhizobium loti MAFF303099] Length = 211 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +A L+ RE L L +G ++ IA +L +SVHT ++ + +KL A NR AI Sbjct: 141 DEHAARPALSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAI 200 Query: 226 AKAIRFGYI 234 A A+R G + Sbjct: 201 AIAMRQGLV 209 >gi|189461600|ref|ZP_03010385.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136] gi|189431710|gb|EDV00695.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136] Length = 202 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + ++ S L++RE + G T++EIAEKL +SVHTV + + T KL Sbjct: 119 LMNFAEEDDSGQDTLSQREKEIIGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIH 178 Query: 220 NRIQAIAKAIRFGYI 234 + AI + Sbjct: 179 SAAGLTIYAIVNKLV 193 >gi|254976785|ref|ZP_05273257.1| salavaricin two-component response regulator [Clostridium difficile QCD-66c26] gi|255094171|ref|ZP_05323649.1| salavaricin two-component response regulator [Clostridium difficile CIP 107932] gi|255315923|ref|ZP_05357506.1| salavaricin two-component response regulator [Clostridium difficile QCD-76w55] gi|255518582|ref|ZP_05386258.1| salavaricin two-component response regulator [Clostridium difficile QCD-97b34] gi|255651702|ref|ZP_05398604.1| salavaricin two-component response regulator [Clostridium difficile QCD-37x79] gi|306521501|ref|ZP_07407848.1| salavaricin two-component response regulator [Clostridium difficile QCD-32g58] Length = 200 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 134 EDLTNMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIKM 193 Query: 232 GYI 234 GYI Sbjct: 194 GYI 196 >gi|260684735|ref|YP_003216020.1| salavaricin two-component response regulator [Clostridium difficile CD196] gi|260688393|ref|YP_003219527.1| salavaricin two-component response regulator [Clostridium difficile R20291] gi|260210898|emb|CBA66091.1| salavaricin two-component response regulator [Clostridium difficile CD196] gi|260214410|emb|CBE06831.1| salavaricin two-component response regulator [Clostridium difficile R20291] Length = 206 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 140 EDLTNMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIKM 199 Query: 232 GYI 234 GYI Sbjct: 200 GYI 202 >gi|312195094|ref|YP_004015155.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226430|gb|ADP79285.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 371 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 10/229 (4%) Query: 9 KKSSSLQELS-PRLHLIQNRIKARNFALYTINSALDFPRRQQL---ICELHNYDLDSGDI 64 +++++L L + + RN A + + L+ + D Sbjct: 132 ERAATLPAFREAVLDAMSRHLGYRNSAFF-LGPTLEAAFQDPRPSGRGLALRMAGPFLDR 190 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 L E + D + + + E + R + + + Sbjct: 191 YRGL-EVFSDPESLRLIRERGLVTLEDVGNPARPEIRLR-MERFLRAHGIHSELLLRLAG 248 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSC 181 + + + + + L + + L+ RE Sbjct: 249 PANIGAVISLLDPRPGAFGPRDRAIAAVLGRHLGNLLRFHVRANTGPAVTAKLSARERDV 308 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++L +G+++ ++AE L +S+ TV +L A V NR Q R Sbjct: 309 VRLVAEGHSNRQVAEALCISIDTVKHHLTHALVATACTNRTQLALAWQR 357 >gi|302189119|ref|ZP_07265792.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 909 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAA---RN 173 + P G + + +E +E +++ ++ A Sbjct: 788 SLPAASGGALIPFKVLLAEHPQWLHEQLLQLPPCRVRAALLEKLPACCTPSPEPAHGSDC 847 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 848 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGL 907 Query: 234 I 234 + Sbjct: 908 L 908 >gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family [cyanobacterium UCYN-A] Length = 233 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE S L L +G ++EIA +L SV V Y+ K + +R + + A++ G Sbjct: 171 LTPREKSVLDLVAEGLMNKEIAARLNTSVRNVEKYVSRLFGKTETNSRTELVRFALKHGL 230 >gi|229588468|ref|YP_002870587.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360334|emb|CAY47191.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 909 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L+ RE + L+L G +++EI+ +L +S+HTV + KL R QA+A+ Sbjct: 842 APAHETLSARELAVLKLIAQGCSNQEISNQLFISLHTVKTHASHINSKLGVERRTQAVAR 901 Query: 228 AIRFGYI 234 A G + Sbjct: 902 AKAMGLL 908 >gi|218231458|ref|YP_002370129.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218159415|gb|ACK59407.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 200 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|121535873|ref|ZP_01667671.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] gi|121305538|gb|EAX46482.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] Length = 216 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + L + + L+++E L L GY + EIAE+L +SV TV Y Sbjct: 133 KAVVAELTERPRADDLRKPLSDQEKKVLSLIAAGYANREIAEQLVISVKTVETYKYRIME 192 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ R + A+ G + Sbjct: 193 KLNCKKRSDLVKFALDNGLL 212 >gi|85373778|ref|YP_457840.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594] gi|84786861|gb|ABC63043.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594] Length = 225 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + ++ + + L+ R+ L G ++E+A +LGLS TV + G KL+ Sbjct: 153 MARRERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKLNLKT 212 Query: 221 RIQAIAKAIRFGY 233 + A+ G Sbjct: 213 SADLVRIAVEAGI 225 >gi|325282015|ref|YP_004254557.1| two component transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] gi|324313824|gb|ADY34377.1| two component transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] Length = 223 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++ERE L G +++EIA+KL +S TV+ + + K N + AI Sbjct: 157 PDNEISERELEILYHVCLGLSNQEIADKLFISKRTVDKHRANLLSKTGCRNTAALVMYAI 216 Query: 230 RFGYI 234 + I Sbjct: 217 KNKMI 221 >gi|294813520|ref|ZP_06772163.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|326442073|ref|ZP_08216807.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] gi|294326119|gb|EFG07762.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 252 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + A + ++ + T LT RET L+L G + I Sbjct: 145 AALRTVSAGDAVVAPRLLTRLIGTFVAPQRTTEEVRLDGLTPRETEVLRLIATGLDNTGI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+LG+ V TV ++ S KL +R QA+ A G + Sbjct: 205 AEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 244 >gi|254444034|ref|ZP_05057510.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198258342|gb|EDY82650.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 209 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 6/111 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF--LELFKKRSSAARNLTERETSCLQ 183 Y++ S + IEA A +VI L ++RS A LT +E L+ Sbjct: 99 AGARAYLLKDSSRSEII--QAIEAVYAGERVIPPAIKQRLLEQRSRPA--LTAKELEILE 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++EIA LG++ TV +L + +KL +R +A KA+ G + Sbjct: 155 LVVQGRRNKEIAADLGITEFTVKGHLKTVFLKLQVSDRTEAAIKAVSEGLV 205 >gi|294664443|ref|ZP_06729796.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605777|gb|EFF49075.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L L G ++++I L +S TV A++ + KL +R A+ A+R Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALRISEETVKAHMKNILGKLGVRDRTHAVTVALRR 206 Query: 232 GYI 234 G + Sbjct: 207 GIL 209 >gi|238020554|ref|ZP_04600980.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147] gi|237867534|gb|EEP68540.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147] Length = 224 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +++ + + S+ ++ LT RE L GY+++ IA+ L L+ T+ ++ + Sbjct: 132 ARLVQSLIRPAQAESALSQ-LTPRELETLGHLAAGYSNKAIAKNLNLAESTIKVHVQNIL 190 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL +R+QA AI+ Sbjct: 191 RKLKLDSRVQAAVFAIQH 208 >gi|297195058|ref|ZP_06912456.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197721552|gb|EDY65460.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 223 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 3/104 (2%) Query: 134 FTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + ++ A + +I + A +T+RE L L G G + Sbjct: 116 LAAVRVVAAGDALIAPSVTRRLIEEFAARPKPPATPPHPAIDGVTDREREVLTLIGRGLS 175 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA++L +S T A++G KL A +R+Q + A G + Sbjct: 176 NGEIADRLCISPATAKAHVGRLFTKLAARDRVQLVIIAYELGLV 219 >gi|171909746|ref|ZP_02925216.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 215 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L ERE L L G+ +EIA++LG+S HTVN+++ KL +R QA+AK Sbjct: 152 PEMSALAEREREVLDLLSKGFLYKEIADQLGISTHTVNSHIRRIYEKLHVRSRAQAVAK 210 >gi|158318427|ref|YP_001510935.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113832|gb|ABW16029.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 398 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 41/98 (41%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + ++ + + + LTERE L G G+T+ EIA Sbjct: 282 GDAVIAPALARRLLDAFAQHLGDALPDGERAADPRLDTLTEREREILVAIGHGWTNGEIA 341 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E+L LS TV ++G K+ A +R+QA+ A G Sbjct: 342 ERLVLSESTVKTHVGRMLAKIGARDRVQAVICAYDLGL 379 >gi|84495104|ref|ZP_00994223.1| putative two component system response regulator [Janibacter sp. HTCC2649] gi|84384597|gb|EAQ00477.1| putative two component system response regulator [Janibacter sp. HTCC2649] Length = 224 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 ++I +F + S A LT+RE + L G+G +++EIA +L +S T Sbjct: 130 RVTRRLIGEFASRSRDTSMPAARELALLTDREREIVGLVGEGLSNDEIATRLVVSPATAK 189 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A VKL A +R Q + A G + Sbjct: 190 THVSRAMVKLHARDRAQLVVLAYESGLV 217 >gi|269793167|ref|YP_003318071.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100802|gb|ACZ19789.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 211 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 7/117 (5%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTER 177 + GYV+ +S EVI EA + + D S L++R Sbjct: 90 VAASMRAGAKGYVLKSSP-----PEVICEAIRTVSRGRLFLDLEASDLVSSGPTEELSQR 144 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L LA G S+EIA +L +S TV A+L S KL A N+ +A+ ++ G + Sbjct: 145 EREVLLLASRGLASKEIASRLVISDRTVQAHLASIYGKLGARNKTEAMLLGLKHGIL 201 >gi|254383084|ref|ZP_04998438.1| two-component system DNA-binding response regulator [Streptomyces sp. Mg1] gi|194341983|gb|EDX22949.1| two-component system DNA-binding response regulator [Streptomyces sp. Mg1] Length = 235 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + + ++ L+ F + LT Sbjct: 117 IRGGARGYVTKTITGTDLVDSVFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 176 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 177 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 235 >gi|15805459|ref|NP_294155.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458112|gb|AAF10009.1|AE001902_9 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 214 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 46/95 (48%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A E +++A A + + + S +L ERET L+L G+++++IA +L Sbjct: 116 RVAAGEALLDADMAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQGFSNQDIALRL 175 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +S TV L KL NR QA AIR G Sbjct: 176 DISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|297155349|gb|ADI05061.1| two-component system regulator [Streptomyces bingchenggensis BCW-1] Length = 237 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 19/163 (11%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML----ANEVI 146 + + + P + + + + +L E + Sbjct: 59 DTDFPDLGGAETIQRILEADPENPPTALLVTSTVDDNDIYAALHAGARGILLKNIPPEQM 118 Query: 147 IEAHGACYQ--------VITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTS 191 A A + V++ +++ R++ LT RE L+L GY + Sbjct: 119 TAAVTAAARGNMVFSPGVMSRLVDICTHRTTPVEYDGSRLATLTMREAEVLKLVAKGYGN 178 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A+ L +S TV +L A KL+ +R QA+A + FG + Sbjct: 179 STVAKILHISEATVKTHLNRAMGKLEISSRAQAVALSYEFGLV 221 >gi|325675648|ref|ZP_08155332.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553619|gb|EGD23297.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 222 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S ++T RE L+ G ++ EIA+K +S TV ++G K + +R+Q Sbjct: 143 DSAAPSLPEDMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQ 202 Query: 224 AIAKAIRFGYI 234 A+ A + G + Sbjct: 203 AVVYAFQVGLV 213 >gi|295401748|ref|ZP_06811714.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294976235|gb|EFG51847.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 223 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 L +GI V + L +E +I H Q+ ++ ++ Sbjct: 91 YLIESGITGFVSKTATSEQLITVIR--CALRDEAVIPVHLL-RQLHLREVKAKMAENAEH 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++ E L +G +++IA+K +S +V +L KL +R++A+ KA + Sbjct: 148 VALSQLEQEILMEVANGLCNKDIAKKHHISQRSVERHLSRIFTKLHVSSRVEAVEKAKQL 207 Query: 232 GYI 234 G I Sbjct: 208 GLI 210 >gi|302536340|ref|ZP_07288682.1| two-component system DNA-binding response regulator [Streptomyces sp. C] gi|302445235|gb|EFL17051.1| two-component system DNA-binding response regulator [Streptomyces sp. C] Length = 231 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + + ++ L+ F + LT Sbjct: 113 IRGGARGYVTKTITGTDLVDSVFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|257057812|ref|YP_003135644.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587684|gb|ACU98817.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 250 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D +L L+ RE LQL +G + +A+KL LSV TV ++ S KL A Sbjct: 159 DATDLTSGPHRLDMPLSRREYQVLQLIAEGLENAAVADKLYLSVETVRTHVKSILRKLGA 218 Query: 219 VNRIQAIAKAIRFGYI 234 +R A++KA R G + Sbjct: 219 RDRTHAVSKAFRSGLL 234 >gi|228924099|ref|ZP_04087375.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835589|gb|EEM80954.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 189 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 +I Sbjct: 188 WI 189 >gi|89096396|ref|ZP_01169289.1| YocG [Bacillus sp. NRRL B-14911] gi|89089250|gb|EAR68358.1| YocG [Bacillus sp. NRRL B-14911] Length = 198 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G EL + LTERE + L+L Sbjct: 93 AGVSGYLLKDSPSEELAGSIRSVMAGRRIYA----PELMDDMYAEENPLTEREKAVLELV 148 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG + EIA +L + TV Y+ + KL+ NRI+AI ++ G+ Sbjct: 149 ADGKNTNEIAAELSIKSGTVRNYVSAILEKLEVQNRIEAITRSREKGW 196 >gi|329938503|ref|ZP_08287928.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329302476|gb|EGG46367.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 37/78 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D L +S LT RE L G ++ E+A +L ++ TV +LG+ KL Sbjct: 149 VADRLAPANGQSERLNVLTARERDVLSQVARGLSNAEVAAELYVAEATVKTHLGNLMAKL 208 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+A A G + Sbjct: 209 HLRDRAQAVAFAYESGLV 226 >gi|323500078|ref|ZP_08105032.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323314934|gb|EGA67991.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 212 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G++S+++A L +S TV + + KLD + + A+ G Sbjct: 150 PLSRREEAVLKLVAQGHSSKKVASMLNISYRTVETHRQNIKHKLDIHSTAELAKYAVEQG 209 Query: 233 YI 234 + Sbjct: 210 LV 211 >gi|190889703|ref|YP_001976245.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190694982|gb|ACE89067.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 260 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + LT RE L L G ++ IA+KL LS +TV ++ + K++ NR +A + Sbjct: 182 RRDSISALTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKMNVRNRTEAAS 241 Query: 227 K 227 + Sbjct: 242 R 242 >gi|52140211|ref|YP_086620.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51973680|gb|AAU15230.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 200 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|329937029|ref|ZP_08286658.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329303636|gb|EGG47521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G++S+EIA+ L +S+ TV + + KL +R++ AIR G Sbjct: 162 LTPREEEVLKLIAEGHSSKEIADTLFISIKTVQRHRANLLHKLGLRDRLELTRYAIRAGL 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|294141034|ref|YP_003557012.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293327503|dbj|BAJ02234.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 214 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G + +IAE L + + TV + + KL+A N + I A R Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELIHWAQRL 212 >gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 210 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E +Q G + EIAE+L +S TV +++ + K + NR + AI Sbjct: 149 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 207 >gi|227820843|ref|YP_002824813.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339842|gb|ACP24060.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 245 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 + + +G + ++ E ++L+ E + + + F R L Sbjct: 127 RSYCSVTFNVGRSRFSLMLLFPEDVILSQEGLRDIAVLASY-LASFKAGAGVRHDRDFEL 185 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE CL +G TSEEIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 186 TEREIECLFWIAEGKTSEEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRHNLV 245 >gi|84497630|ref|ZP_00996452.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] gi|84382518|gb|EAP98400.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] Length = 210 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLA 185 GY++ + +LA+ + A G L ++ R+ A LT RE LQ Sbjct: 97 GARGYLLKDTPPAVLADAIRRAALGETVLAPPVAARLAERLRAPAQVELTPRELDVLQAV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ E+ +L + TV +L KL+ +R A+ A + G I Sbjct: 157 ARGLSNGEVGRELFIGEATVKTHLLRIFAKLEVTDRTAAVTAAYKIGLI 205 >gi|99080801|ref|YP_612955.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99037081|gb|ABF63693.1| two component transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 214 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 12/159 (7%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-----PVRL--GFHKNGYVIFTSEF 138 P + + R G+A P R G + F + Sbjct: 56 PFDLVLLDYNMPGMNGLDGLQRALKANGGR-GVAILSGSAPTRTAQDALDAGAIGFIPKT 114 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL----TERETSCLQLAGDGYTSEEI 194 + + + + ++ + ++ S+ L + RE L G +++EI Sbjct: 115 MGAQSLLNAVRFMSAGEIYVPVELMREEASAPEHPLLAQLSPREVEVLSGLCRGQSNKEI 174 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A L L T+ ++ + KLDA NR QA A G Sbjct: 175 ARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGL 213 >gi|67924631|ref|ZP_00518043.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] gi|67853530|gb|EAM48877.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] Length = 90 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L L G T+ EIA+KL +S TV+ ++ + K NR++ + +++G Sbjct: 11 SLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTDNRVELVRWGLQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|15610269|ref|NP_217649.1| two component transcriptional regulatory protein DevR [Mycobacterium tuberculosis H37Rv] gi|15842706|ref|NP_337743.1| LuxR family DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|31794309|ref|NP_856802.1| two component transcriptional regulatory protein DevR [Mycobacterium bovis AF2122/97] gi|121639016|ref|YP_979240.1| two component transcriptional regulatory protein DevR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662987|ref|YP_001284510.1| two component transcriptional regulatory protein DevR [Mycobacterium tuberculosis H37Ra] gi|148824327|ref|YP_001289081.1| two component system transcriptional regulatory protein DevR [Mycobacterium tuberculosis F11] gi|167970198|ref|ZP_02552475.1| two component system transcriptional regulatory protein devR (luxR/uhpA-family) [Mycobacterium tuberculosis H37Ra] gi|215405131|ref|ZP_03417312.1| two component system transcriptional regulatory protein DevR [Mycobacterium tuberculosis 02_1987] gi|215413001|ref|ZP_03421702.1| two component system transcriptional regulatory protein DevR [Mycobacterium tuberculosis 94_M4241A] gi|215428587|ref|ZP_03426506.1| two component system transcriptional regulatory protein DevR [Mycobacterium tuberculosis T92] gi|215432092|ref|ZP_03430011.1| two component system transcriptional regulatory protein DevR [Mycobacterium tuberculosis EAS054] gi|215447421|ref|ZP_03434173.1| two component system transcriptional regulatory protein DevR [Mycobacterium tuberculosis T85] gi|218754909|ref|ZP_03533705.1| two component system transcriptional regulatory protein DevR [Mycobacterium tuberculosis GM 1503] gi|219559179|ref|ZP_03538255.1| two component system transcriptional regulatory protein DevR [Mycobacterium tuberculosis T17] gi|224991508|ref|YP_002646197.1| two component transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800166|ref|YP_003033167.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis KZN 1435] gi|254233755|ref|ZP_04927080.1| two component transcriptional regulatory protein devR (probably luxR/uhpA-family) [Mycobacterium tuberculosis C] gi|254365759|ref|ZP_04981804.1| two component transcriptional regulatory protein devR (probably luxR/uhpA-family) [Mycobacterium tuberculosis str. Haarlem] gi|254552223|ref|ZP_05142670.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188172|ref|ZP_05765646.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis CPHL_A] gi|260202279|ref|ZP_05769770.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis T46] gi|260206471|ref|ZP_05773962.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis K85] gi|289444697|ref|ZP_06434441.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis T46] gi|289448812|ref|ZP_06438556.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis CPHL_A] gi|289555407|ref|ZP_06444617.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis KZN 605] gi|289571343|ref|ZP_06451570.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis T17] gi|289575844|ref|ZP_06456071.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis K85] gi|289746943|ref|ZP_06506321.1| two component transcriptional regulatory protein DevR [Mycobacterium tuberculosis 02_1987] gi|289751809|ref|ZP_06511187.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis T92] gi|289755253|ref|ZP_06514631.1| two component transcriptional regulatory protein devr [Mycobacterium tuberculosis EAS054] gi|289759262|ref|ZP_06518640.1| two component transcriptional regulatory protein devr [Mycobacterium tuberculosis T85] gi|289763316|ref|ZP_06522694.1| two component transcriptional regulatory protein devR (probably luxR/uhpA-family) [Mycobacterium tuberculosis GM 1503] gi|294995500|ref|ZP_06801191.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis 210] gi|297635775|ref|ZP_06953555.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis KZN 4207] gi|297732772|ref|ZP_06961890.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis KZN R506] gi|298526608|ref|ZP_07014017.1| two component transcriptional regulatory protein devr [Mycobacterium tuberculosis 94_M4241A] gi|306777449|ref|ZP_07415786.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu001] gi|306782174|ref|ZP_07420511.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu002] gi|306785994|ref|ZP_07424316.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu003] gi|306790359|ref|ZP_07428681.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu004] gi|306794886|ref|ZP_07433188.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu005] gi|306799085|ref|ZP_07437387.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu006] gi|306804929|ref|ZP_07441597.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu008] gi|306809118|ref|ZP_07445786.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu007] gi|306969219|ref|ZP_07481880.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu009] gi|306973567|ref|ZP_07486228.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu010] gi|307081276|ref|ZP_07490446.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu011] gi|307085878|ref|ZP_07494991.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu012] gi|313660105|ref|ZP_07816985.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis KZN V2475] gi|81818247|sp|P95193|DEVR_MYCTU RecName: Full=Transcriptional regulatory protein devR (dosR) gi|1781234|emb|CAB06281.1| TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY LUXR/UHPA-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|4335782|gb|AAD17452.1| DevR [Mycobacterium tuberculosis H37Rv] gi|13883027|gb|AAK47557.1| DNA-binding response regulator, LuxR family [Mycobacterium tuberculosis CDC1551] gi|25992275|gb|AAN77131.1| putative response regulator [Mycobacterium bovis] gi|31619905|emb|CAD95249.1| TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY LUXR/UHPA-FAMILY) [Mycobacterium bovis AF2122/97] gi|121494664|emb|CAL73145.1| Two component transcriptional regulatory protein devR (probably luxR/uhpA-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599284|gb|EAY58388.1| two component transcriptional regulatory protein devR (probably luxR/uhpA-family) [Mycobacterium tuberculosis C] gi|134151272|gb|EBA43317.1| two component transcriptional regulatory protein devR (probably luxR/uhpA-family) [Mycobacterium tuberculosis str. Haarlem] gi|148507139|gb|ABQ74948.1| two component transcriptional regulatory protein DevR [Mycobacterium tuberculosis H37Ra] gi|148722854|gb|ABR07479.1| two component system transcriptional regulatory protein devR (luxR/uhpA-family) [Mycobacterium tuberculosis F11] gi|224774623|dbj|BAH27429.1| two component transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321669|gb|ACT26272.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis KZN 1435] gi|289417616|gb|EFD14856.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis T46] gi|289421770|gb|EFD18971.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis CPHL_A] gi|289440039|gb|EFD22532.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis KZN 605] gi|289540275|gb|EFD44853.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis K85] gi|289545097|gb|EFD48745.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis T17] gi|289687471|gb|EFD54959.1| two component transcriptional regulatory protein DevR [Mycobacterium tuberculosis 02_1987] gi|289692396|gb|EFD59825.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis T92] gi|289695840|gb|EFD63269.1| two component transcriptional regulatory protein devr [Mycobacterium tuberculosis EAS054] gi|289710822|gb|EFD74838.1| two component transcriptional regulatory protein devR (probably luxR/uhpA-family) [Mycobacterium tuberculosis GM 1503] gi|289714826|gb|EFD78838.1| two component transcriptional regulatory protein devr [Mycobacterium tuberculosis T85] gi|298496402|gb|EFI31696.1| two component transcriptional regulatory protein devr [Mycobacterium tuberculosis 94_M4241A] gi|308214161|gb|EFO73560.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu001] gi|308325136|gb|EFP13987.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu002] gi|308329392|gb|EFP18243.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu003] gi|308333215|gb|EFP22066.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu004] gi|308336672|gb|EFP25523.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu005] gi|308340512|gb|EFP29363.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu006] gi|308344452|gb|EFP33303.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu007] gi|308348448|gb|EFP37299.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu008] gi|308353078|gb|EFP41929.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu009] gi|308357051|gb|EFP45902.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu010] gi|308361006|gb|EFP49857.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu011] gi|308364614|gb|EFP53465.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis SUMu012] gi|323718221|gb|EGB27401.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis CDC1551A] gi|326902643|gb|EGE49576.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis W-148] gi|328459904|gb|AEB05327.1| two component system transcriptional regulator devR [Mycobacterium tuberculosis KZN 4207] Length = 217 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 35/86 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L ++ LT++E + L L +G T+++IA+++ L+ TV Sbjct: 122 RSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 Y+ KL R QA A Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFATEL 207 >gi|308273005|emb|CBX29609.1| hypothetical protein N47_J05900 [uncultured Desulfobacterium sp.] Length = 229 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G+GY + EIA+ L +SV TV + + KLD A +I Sbjct: 164 DMLTQREKEVLKLVGEGYKNLEIADYLCISVKTVEKHRANIMEKLDLHTASALTAYSIER 223 Query: 232 GYI 234 G + Sbjct: 224 GLV 226 >gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 210 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E +Q G + EIAE+L +S TV +++ + K + NR + AI Sbjct: 149 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 207 >gi|262373940|ref|ZP_06067217.1| response regulator [Acinetobacter junii SH205] gi|262310951|gb|EEY92038.1| response regulator [Acinetobacter junii SH205] Length = 211 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|302558086|ref|ZP_07310428.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302475704|gb|EFL38797.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 211 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + LT RET L L Sbjct: 101 AGATGYLLKDAPPEELAAAVRTAAAGRTTLAPAVADRLMNRLRAPHAALTRRETEVLSLV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++ I+ +L L+ TV ++L KL +R A+A A+ G I Sbjct: 161 AEGLSNQGISARLQLTRATVKSHLAHVYAKLGVDSRTSAVAAALELGVI 209 >gi|302535350|ref|ZP_07287692.1| two-component system response regulator [Streptomyces sp. C] gi|302444245|gb|EFL16061.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183 ++A + A ++I++F +L + +A + LTERET L Sbjct: 106 DASARQLAEGVRVVAAGEALLAPSVTKRLISEFSKLSDVQRAADPSGVSELTERETEVLV 165 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA++L ++ T+ ++ VKL +R QA A + Sbjct: 166 LIAQGLSNGEIADRLLVAESTIKTHVSRILVKLGLRDRTQAAVYAYETRLV 216 >gi|300775044|ref|ZP_07084907.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300506859|gb|EFK37994.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 210 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 152 ACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + L+ F+ + LTERE L+L G +EIA+K +S+ TV + Sbjct: 126 MSFSIARRVLKHFENKLPEVEGFDELTEREKEILELLSQGLLYKEIADKKFISIDTVKKH 185 Query: 209 LGSATVKLDAVNRIQAIAK 227 +G+ KL N+++A+ K Sbjct: 186 VGNIYRKLHVNNKVEAVNK 204 >gi|86361277|ref|YP_473164.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86285379|gb|ABC94437.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 218 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTE 176 P+ + K G V F ++ + I++A V +S A +LT Sbjct: 97 IPMSVRAMKAGAVDFLTK--PFEEQDILDAVATAMERDAVRRQESAQSAAVTSLAASLTP 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE + G +++IA +LG+S TV + G+ K++ + + KA G Sbjct: 155 REREVMDAVVRGLMNKQIAFELGISEVTVKLHRGNVMRKMEVRSVADLVRKAEILG 210 >gi|332706485|ref|ZP_08426546.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332354369|gb|EGJ33848.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 230 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L L G ++ EI +L S T+ ++ S K D NR + + A+ Sbjct: 166 ALQLTEREQQVLNLLATGLSNVEIGNQLYRSPRTIEKHVSSLFRKTDTSNRAELLRFALE 225 Query: 231 FGYI 234 I Sbjct: 226 HHLI 229 >gi|256372733|ref|YP_003110557.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256009317|gb|ACU54884.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 222 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L G T+ EIAE L +S TV +L K+ A NR A+ +A+ G Sbjct: 143 LSDRERQVLELVARGRTNVEIAEALAISEATVKTHLAHVFDKVGATNRTSAVLRAMELGL 202 Query: 234 I 234 I Sbjct: 203 I 203 >gi|166710760|ref|ZP_02241967.1| putative transcriptional regulator, LuxR family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 235 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + A + H V ++ N+ + Sbjct: 86 AAGDGHEAAWLIPPRPADIGEARVPIHALGTTHGMLCVAWSEGRPAPGNDDVQALQAFAL 145 Query: 155 QVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E K+ + R L++RE L L G T+ +A +LG++ TV Sbjct: 146 LLPAMVAEPAKQIPTRRRKPLQDDRLGALSKREKQVLSLLPRGLTNASLAAELGIAPGTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL+ +R QA A++ G Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|114764692|ref|ZP_01443877.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542892|gb|EAU45913.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 214 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L S LT RE + L G +++E+A L +SV TV + + KL + Sbjct: 135 ALRPVMSGGREQLTNREQTVLLQLAQGKSNKEVALALDISVRTVETHRKNIKRKLGISST 194 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 195 AGLTRYALEHGVL 207 >gi|120406420|ref|YP_956249.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959238|gb|ABM16243.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 212 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSA 170 L + V G + L+ A I A + + RS + Sbjct: 89 FLDEDLVVRAVHAGARGYVVKDVDTTELVRAIRAISAGDSAFDSRSAAAVVRSMSGRSES 148 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L+L G ++ +I E+L +S T ++ + KL+ R +A+ A + Sbjct: 149 RAQLTDREVEVLRLLAAGLSNNKIGERLYISATTAKFHVSNIMRKLEVSRRAEAVYAASK 208 Query: 231 FGYI 234 G I Sbjct: 209 RGLI 212 >gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] Length = 252 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + + + ++ K + A + T RE S LQL +G Sbjct: 149 LLAEAARYADADIGQMARQITEIRSLLQQTGS-HKSATPATHSFTPREASVLQLVAEGLM 207 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA +L S+ V Y+ K +R + + A+ G + Sbjct: 208 NKEIARRLETSIRNVEKYVSRLFTKTGTTSRTELVRYALENGLV 251 >gi|325264809|ref|ZP_08131538.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] gi|324030101|gb|EGB91387.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] Length = 198 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 TERE G ++ +IA L LSV TV +L + + +R A+A A+ Sbjct: 126 GHGFTEREAEVTYWLCQGKSNGDIAYILNLSVSTVKKHLSNIFDNMGVRSRSAAVALALE 185 Query: 231 F 231 Sbjct: 186 M 186 >gi|325964374|ref|YP_004242280.1| LuxR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323470461|gb|ADX74146.1| two component transcriptional regulator, LuxR family [Arthrobacter phenanthrenivorans Sphe3] Length = 217 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-RSSAARNL 174 L +GYV+ + L G A +I D+LE ++ L Sbjct: 96 SLRAGASGYVLKSVADRDLIEACRASMRGESFLYPGAVTALIRDYLERDRRGDRMPNSIL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE +L +G +++EIA+ L +S+ TV+ + + KL +R+ AIR G I Sbjct: 156 TPREEQITKLIAEGNSTKEIADALKISIKTVDRHRANVLQKLGLRDRLDLTRFAIRTGLI 215 >gi|291575300|gb|ADE10225.1| LigR1 [Actinoplanes liguriensis] Length = 217 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 37/89 (41%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + EA + + L++RE + L L G G T+ EIA +L +S T Sbjct: 123 LAPEASSIMLGAACRGTPAAENAVDEVKQLSDREQAVLGLIGQGLTNAEIAGRLFISDST 182 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V Y+ KL NR+QA A G Sbjct: 183 VKEYVSVILRKLGVANRVQAAVLAYAAGL 211 >gi|298384248|ref|ZP_06993808.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298262527|gb|EFI05391.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 216 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 42/100 (42%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + E + A + + IT+ L R LT ET L+L G + +EI Sbjct: 110 SGEEIRSALKCMALGERFLCYQITELLISNSGRPEHHSVLTATETDILKLIARGKSVKEI 169 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A + SVHT+ + + KL N +A A+R G + Sbjct: 170 AAERISSVHTIVTHKKNIFRKLGVNNVYEATRYALRAGLV 209 >gi|302530526|ref|ZP_07282868.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439421|gb|EFL11237.1| two-component system response regulator [Streptomyces sp. AA4] Length = 207 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 6/113 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSAARNLTERETSC 181 GY++ + L I AH V + + L+ RE Sbjct: 96 AGAAGYLLKDASRTEL-AGAIRAAHRGETVLAPSVAGKLVHRM-RNPEPVSPLSAREVEV 153 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EI +L + TV +L KL +R A+ A+ + Sbjct: 154 LRLVAKGRTNAEIGRELHIGEATVKTHLLRVFSKLGVSDRTAAVTTALDRHLL 206 >gi|239940280|ref|ZP_04692217.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986761|ref|ZP_04707425.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443713|ref|ZP_06583103.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346660|gb|EFE73564.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 155 EREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 211 >gi|190574796|ref|YP_001972641.1| putative two-component system response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012718|emb|CAQ46347.1| putative two-component system response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 217 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L+ G +++ I E++ +S TV A++ S KL +R A+ +A+R Sbjct: 147 DRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRR 206 Query: 232 GYI 234 G I Sbjct: 207 GII 209 >gi|153829582|ref|ZP_01982249.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|148874916|gb|EDL73051.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] Length = 216 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L++ G +S++IA L +S TV + + KLD + + A++ G Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|126640329|ref|YP_001083313.1| response regulator [Acinetobacter baumannii ATCC 17978] gi|194474666|gb|ACF74452.1| response regulator [Acinetobacter baumannii] Length = 192 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 119 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 178 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 179 KLTHLAIRYGLI 190 >gi|124002839|ref|ZP_01687691.1| two-component response regulator [Microscilla marina ATCC 23134] gi|123992067|gb|EAY31454.1| two-component response regulator [Microscilla marina ATCC 23134] Length = 213 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G + EI +KL +S TV + + K N ++ + AI Sbjct: 153 LTFREKEVLEQVVAGLGNREIGDKLCISTRTVENHRANILRKFGLKNTVELVKFAIENSL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|118594726|ref|ZP_01552073.1| regulatory protein, LuxR:Response regulator receiver [Methylophilales bacterium HTCC2181] gi|118440504|gb|EAV47131.1| regulatory protein, LuxR:Response regulator receiver [Methylophilales bacterium HTCC2181] Length = 212 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ L++RE G ++ EIAE + LS TV +L + KL+A N + Sbjct: 142 GENNPVEVLSDREFEVFMALAKGRSTNEIAETICLSPRTVGTHLYNIKQKLNASNSAEIA 201 Query: 226 AKAIRFGYI 234 AIR G + Sbjct: 202 LIAIRSGLL 210 >gi|78187407|ref|YP_375450.1| two component LuxR family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167309|gb|ABB24407.1| two component transcriptional regulator, LuxR family [Chlorobium luteolum DSM 273] Length = 214 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D L + A LT E ++L G T++EIA K +S HTV + + KL Sbjct: 132 DILLKEDGPAEDACLLTTSEIEIVRLISTGLTTKEIAVKKHVSFHTVTTHRKNIFRKLGV 191 Query: 219 VNRIQAIAKAIRFGYI 234 + + + AI+ G I Sbjct: 192 SSSPELMMFAIKAGLI 207 >gi|256786843|ref|ZP_05525274.1| two-component system regulator [Streptomyces lividans TK24] gi|289770738|ref|ZP_06530116.1| two component system response regulator [Streptomyces lividans TK24] gi|289700937|gb|EFD68366.1| two component system response regulator [Streptomyces lividans TK24] Length = 248 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G G ++ E A++L +S TV +L KL +R QA+ A G Sbjct: 180 LTGREAEVLRLVGRGLSNAEAADRLFISEATVKTHLNRTMSKLGLTSRAQAVVVAYETGL 239 Query: 234 I 234 + Sbjct: 240 V 240 >gi|257057857|ref|YP_003135689.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587729|gb|ACU98862.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 218 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 42/96 (43%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++ + + RS+ A+ LT RE ++ A G T+ EI + Sbjct: 118 RAAARGDALVSPQVTVRLLRHFGRKQRPDRSTRAKELTGRELDVVRAAARGLTNSEIGAE 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L LS+ TV +L S KL NR++ A A R G Sbjct: 178 LYLSLSTVKTHLASVQQKLGVRNRVEIAAWAWRNGI 213 >gi|256380392|ref|YP_003104052.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924695|gb|ACU40206.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 225 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 37/84 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V+ + + LT+RE + LA G +++ IAE L LS T ++ Sbjct: 135 ALVRHVLAHPESDPPQAPAPLELLTDREREVVVLAAHGLSNDRIAEHLHLSPLTAKTHVN 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 A KL+ +R Q + A R G + Sbjct: 195 RAMSKLNTRDRAQLVVLAYRTGLV 218 >gi|254424187|ref|ZP_05037905.1| transcriptional regulator, LuxR family protein [Synechococcus sp. PCC 7335] gi|196191676|gb|EDX86640.1| transcriptional regulator, LuxR family protein [Synechococcus sp. PCC 7335] Length = 232 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 16/235 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNY---DLDSGDI 64 G+ +SLQ L + + +R + R + T F + I + + Sbjct: 2 GRAMTSLQLLFEAIQQVNDRAEMR--SHLTPALMEYFEASRAGIFFFDQWKQASPKLRRV 59 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQ----EETVIESSGQLSVRLEGGLLPFAGIAF 120 ++ + + + P+ + + + + V + G L+ I Sbjct: 60 LDVALSVDRNPLAGYMTEHHTPVHEEMVTTPKAWKIICPRPDHWHVMV-GPLIQAGQIVG 118 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERET 179 V G +N + + + I V+ L L K S + LT RE Sbjct: 119 SV--GCTRNKTMPAFNAQDVTDLSAICLHLSERTAVLRYTLPLNSKTSILVSDQLTPREL 176 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI---AKAIRF 231 L G T+ EI +L ++ ++V L KL +R Q + ++A R Sbjct: 177 EIANLVALGRTNAEIGSELWITENSVKQALKRMYRKLKVRSRTQMVTQISRAQRN 231 >gi|160879389|ref|YP_001558357.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428055|gb|ABX41618.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 207 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT++E L + +G +++EIA+ + LS TV YL + +KLD +R QA Sbjct: 145 AYQLTKKEYELLTMVAEGLSNKEIADVMFLSEGTVRNYLSNLMLKLDVRDRTQAAIF 201 >gi|70731182|ref|YP_260923.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345481|gb|AAY93087.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 222 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 43/95 (45%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E ++ A+ LT RE L L G+++ EI EKLG Sbjct: 120 RVARGEEALNSAVSARLLRRMSERGNGQAPQAQALTARERQVLGLVAGGFSNREIGEKLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 180 ITTGTAKAHVERVIGKLGAADRTQAAVRGMALGLV 214 >gi|256838723|ref|ZP_05544233.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739642|gb|EEU52966.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 254 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 41/72 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L A + LT+RE L L G+ S+EIA KL LS++TVN + + KL+ N I Sbjct: 182 LASAVVPADQQLTKREKEILLLIRQGFLSKEIAYKLNLSIYTVNNHRKNILAKLNVDNVI 241 Query: 223 QAIAKAIRFGYI 234 +AI +A FG + Sbjct: 242 EAINRAESFGIL 253 >gi|239926785|ref|ZP_04683738.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435114|ref|ZP_06574504.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291338009|gb|EFE64965.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + ++ + + ++ + K + + LTERET L L Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFARQRPAVRGKPALRLKALTERETEVLTLVA 172 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA+ L L+ TV ++ KLD +R QA+ A + Sbjct: 173 RGQSNGEIAQTLVLAEQTVKTHVSRILTKLDLRDRAQAVVFAYESQLV 220 >gi|291298154|ref|YP_003509432.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567374|gb|ADD40339.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++++IA L +S+ T+ ++GS KL A NR QA+ A G Sbjct: 151 ALTAREAEVLRLMATGLSNQDIATHLTVSLETIKTHVGSVLTKLGAANRTQAVIIAYESG 210 Query: 233 YI 234 ++ Sbjct: 211 FV 212 >gi|254464244|ref|ZP_05077655.1| two component transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] gi|206685152|gb|EDZ45634.1| two component transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] Length = 238 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 33/72 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E A+ L+ RE L G +++EIA +L L T+ ++ + KLDA NR Sbjct: 166 EAAASTHPLAKKLSPRELEVLNGLSKGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNR 225 Query: 222 IQAIAKAIRFGY 233 QA A G Sbjct: 226 TQAALCAKEAGL 237 >gi|196233724|ref|ZP_03132564.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196222238|gb|EDY16768.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 208 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 37/79 (46%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + L + + + LT RE L L G +EIA++LG+S TV A+ Sbjct: 126 MSMHIARKVVSHFHLARPANPEMQTLTPREHEILTLLARGLHYKEIADQLGISTSTVRAH 185 Query: 209 LGSATVKLDAVNRIQAIAK 227 L + KL +R +A+ K Sbjct: 186 LHTIYGKLHVQSRTEAVVK 204 >gi|123442872|ref|YP_001006848.1| GerR-family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089833|emb|CAL12689.1| GerR-family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 209 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + ES L RL + F I + G + ++ Sbjct: 48 VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107 Query: 141 LAN--EVIIEAHGACYQVITDFLEL---FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + HG + D L ++ LT RE QL +G + + IA Sbjct: 108 PDELVQALRTVHGGGLYLCADALRALRHMPQQPQQLAILTPREKEVFQLLINGISVKSIA 167 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+L LS TV+ + + KL+ ++ + A++ + Sbjct: 168 EQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206 >gi|170728356|ref|YP_001762382.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC 51908] gi|169813703|gb|ACA88287.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Shewanella woodyi ATCC 51908] Length = 896 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L G+T+++I+ LG+S +TV +L + KL +NR QA+ Sbjct: 838 LSSREQQICPLLSQGFTNKQISTTLGISENTVKFHLKNLFQKLGVINRQQAV 889 >gi|331699140|ref|YP_004335379.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953829|gb|AEA27526.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +SA LT+RE + L G T+++IAE+L +S T ++ A KL +R Q + Sbjct: 151 AASALTVLTDREREVVALVAGGLTNDDIAERLVVSPATAKTHVSRAMGKLGCRDRAQLVV 210 Query: 227 KAIRFGYI 234 A G + Sbjct: 211 LAYESGLV 218 >gi|317124112|ref|YP_004098224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588200|gb|ADU47497.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 244 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 13/163 (7%) Query: 76 FLFHFN----SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + P+ + ++ E + + + G Sbjct: 91 VIRACAGVQTEAGQPVRFLALSVSDAAEDVIAVI-----RAGARGYVTKTISAGDLLTAI 145 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + + A + E+ ++ L+ RE ++L GY Sbjct: 146 GRVADGDAVFSPRLAGFVLDAFGAAAGEVAEIDEE----LDRLSAREREVMRLIARGYQY 201 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +E+A++L +S+ TV ++ S KL +R + A A+ + Sbjct: 202 KEVAKELFISIKTVETHVSSVLRKLQLSSRHELTAWAMGRRLL 244 >gi|312112457|ref|YP_003990773.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217558|gb|ADP76162.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 223 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 L +GI V + T+ L +E +I H Q+ + + + Sbjct: 91 YLIESGITGFVSKTATSEQLI--TAIRCALRDEAVIPVHLL-RQLHLCEVRAKMEENEKQ 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ E L +G ++++IA+K +S +V +L KL +R++A+ KA + Sbjct: 148 AALSRLEQEILFEVANGLSNKDIAKKHYISQRSVERHLSRIFTKLHVSSRVEAVEKAKQL 207 Query: 232 GYI 234 G I Sbjct: 208 GLI 210 >gi|171915706|ref|ZP_02931176.1| DNA-binding response regulator [Verrucomicrobium spinosum DSM 4136] Length = 220 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETS 180 GY++ T+ + E + ++ LE+F K + L+ RE Sbjct: 107 AGAAGYLLKTAGADAIVSAIREALAGGSPMNPRIARRVLEMFSKLAPKTHDYGLSAREKE 166 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +EIA++L LSVHTV+ YL KL+ R A+AKA++ I Sbjct: 167 ILDLMVKGLIKKEIADRLTLSVHTVDTYLRRIYEKLEVNTRTGAVAKALKERLI 220 >gi|320450528|ref|YP_004202624.1| two component transcriptional regulator, LuxR family [Thermus scotoductus SA-01] gi|320150697|gb|ADW22075.1| two component transcriptional regulator, LuxR family [Thermus scotoductus SA-01] Length = 209 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 3/115 (2%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERET 179 L GYV + L + V+ A + + L+ RE Sbjct: 93 FLQAGGQGYVSKAAVDQELLDAVLALARGERYLNPALAMRLAMEIVREEGEEEPLSPREE 152 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G + +E+AE L +S TV Y KL +R + A++ G++ Sbjct: 153 EVLRLLAKGLSHKEVAEHLSISEKTVATYRERGMEKLGLKSRSDLLRYAVKRGWL 207 >gi|297538453|ref|YP_003674222.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera sp. 301] gi|297257800|gb|ADI29645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Methylotenera sp. 301] Length = 258 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE + G T++EIA L +S +TV ++L K++ R QA+A Sbjct: 198 GLSVRELEIIHWIKSGKTNQEIATILDISQNTVKSHLKRVFQKMNVTRRAQAVAI 252 >gi|294791142|ref|ZP_06756299.1| putative two-component system response regulator [Scardovia inopinata F0304] gi|294457613|gb|EFG25967.1| putative two-component system response regulator [Scardovia inopinata F0304] Length = 214 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Query: 147 IEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +A ++ +E R A +LT+RE L L G G T+ E+A++L ++ + Sbjct: 125 FDASLLSPRITQRLIEKLAPRKPDALVNSLTKREKETLILIGKGMTNAELAQELFITETS 184 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y+ KL+ +R Q + A G + Sbjct: 185 ARTYVSRIMAKLNISSRAQLVIFAYENGLV 214 >gi|302547743|ref|ZP_07300085.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465361|gb|EFL28454.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 227 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 39/109 (35%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G L + + L+ERE LQ Sbjct: 118 AGATGYLLKAERPEELFAAIRNAAAGRTALSAPVADRLMAQMRTPRPTLSERERDILQQL 177 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A A + Sbjct: 178 ARGLGNREIARALFISEATVKTHLGRIYGKLGVDTRAGAVAVATGRRLL 226 >gi|83645434|ref|YP_433869.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83633477|gb|ABC29444.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 894 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L L +G +++IA++L L+ TV A++ + K+ A +R +A+A+A Sbjct: 832 EELSKREMEVLTLIYEGLPNKKIADRLFLAPATVKAHIRNIYGKIGAASRTEALARARHL 891 Query: 232 GYI 234 G + Sbjct: 892 GLL 894 >gi|71906473|ref|YP_284060.1| LuxR response regulator receiver [Dechloromonas aromatica RCB] gi|71846094|gb|AAZ45590.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas aromatica RCB] Length = 221 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + + RE L G +++EIA KL L+ TV ++ + KL+ +R+Q Sbjct: 146 AETATIERDRFSPRERDILASLAQGESNKEIARKLDLAESTVKIHVQNIFKKLNMSSRVQ 205 Query: 224 AIAKAIRFGY 233 A+ GY Sbjct: 206 VALYAVENGY 215 >gi|326800600|ref|YP_004318419.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326551364|gb|ADZ79749.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 209 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + KR++ A LT RE L L + Y+++EIA+KL LS+ TV ++ S KL+ Sbjct: 138 ISGKRTTVAVKLTSREQEILALIANEYSNQEIADKLFLSIRTVESHRHSLNQKLNVKTMA 197 Query: 223 QAIAKAIRFGYI 234 I +A G I Sbjct: 198 GLIKEAYLRGLI 209 >gi|324329302|gb|ADY24562.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 200 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|315271311|gb|ACO47091.2| putative response regulator, NarL [Deinococcus deserti VCD115] Length = 214 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 46/95 (48%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A E +++A A + + + S +L ERET L+L G+++++IA +L Sbjct: 116 RVAAGEALLDADMAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQGFSNQDIALRL 175 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +S TV L KL NR QA AIR G Sbjct: 176 DISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|312891076|ref|ZP_07750599.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311296384|gb|EFQ73530.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 214 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE L L +GYT+ EIA+KL S TV + + K N I A++ Sbjct: 150 AIELSEREKEVLDLISEGYTNNEIADKLFTSRRTVEGHRQNLIEKTGVKNTPSLIRFALQ 209 Query: 231 FGYI 234 G I Sbjct: 210 NGLI 213 >gi|298245529|ref|ZP_06969335.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553010|gb|EFH86875.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 237 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 3/132 (2%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 +V AG + + G V + + +++ + + Sbjct: 104 AYTVDERVLEGLSAGASGYLLKDSSAEGVVAAIR---AVYAGEQVITSRISRRMMQLYEQ 160 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ LT RE L G +EIA+ + ++ TV ++ + KL+ +R Sbjct: 161 GLVEKEPIGEGLTSREIEVLLRIARGMVPKEIAQAIAVTEKTVRNHISNIYRKLNIYDRS 220 Query: 223 QAIAKAIRFGYI 234 Q + AI+ G I Sbjct: 221 QIVIYAIKKGLI 232 >gi|270294588|ref|ZP_06200790.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270276055|gb|EFA21915.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 261 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE S LQL G S+EIA L +S++T+N + + +KL A N I+A+ A R Sbjct: 194 EPLTNRELSVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQRL 253 Query: 232 GYI 234 G + Sbjct: 254 GLL 256 >gi|218260595|ref|ZP_03475826.1| hypothetical protein PRABACTJOHN_01489 [Parabacteroides johnsonii DSM 18315] gi|218224454|gb|EEC97104.1| hypothetical protein PRABACTJOHN_01489 [Parabacteroides johnsonii DSM 18315] Length = 261 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE S LQL G S+EIA L +S++T+N + + +KL A N I+A+ A R Sbjct: 194 EPLTNRELSVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQRL 253 Query: 232 GYI 234 G + Sbjct: 254 GLL 256 >gi|134103671|ref|YP_001109332.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004794|ref|ZP_06562767.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916294|emb|CAM06407.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 36/83 (43%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + LTERE ++ G T+ EI +L +S+ TV +L Sbjct: 134 RLLKHFSQSRERVRSAVAPPKEELTERELQVVRATAKGLTNTEIGRELFMSLSTVKTHLA 193 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 +A K+ A NR++ A A R G Sbjct: 194 AAQAKIGARNRVETAAWAWRSGL 216 >gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 225 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E +Q G + EIAE+L +S TV +++ + K + NR + AI Sbjct: 164 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222 >gi|121610317|ref|YP_998124.1| regulatory protein LuxR [Verminephrobacter eiseniae EF01-2] gi|121554957|gb|ABM59106.1| regulatory protein, LuxR [Verminephrobacter eiseniae EF01-2] Length = 913 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 15/166 (9%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 L + + E ++RL F + G + + + Sbjct: 750 LHLLRAMALDRVSEHDAAFDELTDALRLASHEGFFRTF---LDEGERLSALLQRWATRHR 806 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSA------------ARNLTERETSCLQLAGDG 188 A + A ++ + + A LT RE L++ G Sbjct: 807 AAAASLGIAQQFLSALLERIDAAARNAQPSHAAAPSAKHAADAEALTPRELDVLRMLAMG 866 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + +AEKL +S TV ++L + KLDA +R +A+A G I Sbjct: 867 HRNRVLAEKLFVSEFTVKSHLRRISAKLDAQSRTEAVAIGRARGLI 912 >gi|83644489|ref|YP_432924.1| response regulator [Hahella chejuensis KCTC 2396] gi|83632532|gb|ABC28499.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 223 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + R+ +G ++ IA +L ++ TV ++ + L NR QAI KA + G I Sbjct: 164 SPRQEQVFHYLLEGMPNKVIAARLDMAEGTVKTHMNTIFRALGVRNRAQAILKARQLGVI 223 >gi|42784527|ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740459|gb|AAS44382.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 200 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|30265375|ref|NP_847752.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47778416|ref|YP_022268.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188186|ref|YP_031439.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871303|ref|ZP_02215952.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635735|ref|ZP_02394045.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170688151|ref|ZP_02879362.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708082|ref|ZP_02898530.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651949|ref|ZP_02934532.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190569108|ref|ZP_03022007.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227818115|ref|YP_002818124.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603443|ref|YP_002869565.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687206|ref|ZP_05151064.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724707|ref|ZP_05186490.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254742263|ref|ZP_05199950.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755822|ref|ZP_05207854.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762162|ref|ZP_05214008.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30260053|gb|AAP29238.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47552121|gb|AAT34743.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182113|gb|AAT57489.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712970|gb|EDR18498.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167528844|gb|EDR91601.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127055|gb|EDS95934.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667844|gb|EDT18596.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082653|gb|EDT67717.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190559776|gb|EDV13762.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227003949|gb|ACP13692.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229267851|gb|ACQ49488.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 200 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|329120079|ref|ZP_08248749.1| nitrate/nitrite response regulator protein NarL [Neisseria bacilliformis ATCC BAA-1200] gi|327463610|gb|EGF09928.1| nitrate/nitrite response regulator protein NarL [Neisseria bacilliformis ATCC BAA-1200] Length = 225 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G++++ IA L L+ TV Y+ + KL+ +R+QA A+ Sbjct: 155 RLDELTARELEVLGYLAAGHSNKIIARSLDLAESTVKVYVQNILRKLELTSRVQAAVYAV 214 Query: 230 RF 231 + Sbjct: 215 QH 216 >gi|325916868|ref|ZP_08179116.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536913|gb|EGD08661.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 235 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + A + H V + N+ + Sbjct: 86 AAGDGHEAAWLMPPRPSDMREAKVPIHALGTTHGMLCVAWNDNRPAPGNDDVQALQAFAL 145 Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E ++R L++RE L L G T+ +A +LG+S TV Sbjct: 146 LLPAMVAEPAKPIATRRRKPMQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL+ +R QA A++ G Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQAGL 233 >gi|298241316|ref|ZP_06965123.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554370|gb|EFH88234.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 215 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 6/126 (4%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + VR + + + + + + L Sbjct: 94 AAMRAGARGYLLKGVRHEDMVRAIRAVGNGDAIFSPAIATKLVSYFSTLQPAHL------ 147 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L++RE L L G + EIAE+L +S +V Y+ + KL +R QAI + Sbjct: 148 APVFPELSQREREILALLAQGCKNAEIAERLVVSPKSVRNYVSNVISKLQVADRAQAILR 207 Query: 228 AIRFGY 233 A G Sbjct: 208 AKDAGL 213 >gi|296168969|ref|ZP_06850636.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896355|gb|EFG76010.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 530 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 4/113 (3%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P R G + A ++ V+ +R+ LT RE Sbjct: 416 PHRDALDDTGA---ARQLRSEAARGRLDGDAV-EAVLEAAGHRPSRRAVRPEGLTRREAE 471 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++ EIA L +S TV ++ K+ NRI A A R G Sbjct: 472 VLLHVARGQSNREIASALWISEKTVRNHVERIYAKIGVSNRIGASLYATRHGL 524 >gi|238061024|ref|ZP_04605733.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882835|gb|EEP71663.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 268 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 33/79 (41%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + +A LTERE L +G ++ EI +L +S TV + K Sbjct: 189 AAAGQRPAPARGGRSAIGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRK 248 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L A +R A+A R G + Sbjct: 249 LGARDRAHAVAAGFRAGLV 267 >gi|212637151|ref|YP_002313676.1| regulatory protein LuxR [Shewanella piezotolerans WP3] gi|212558635|gb|ACJ31089.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3] Length = 223 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 13/129 (10%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF------ 160 LL G+ F + + + + + +V Sbjct: 88 EESALLLGVRGLLFS------DQRMDLQLTGLRKILADELWYDRTLISRVFRQLVSQIET 141 Query: 161 -LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L+L + S + + LT RE + +QL G ++EIAE L +S HTV A++ S K A Sbjct: 142 PLQLSTEGSESFQQLTRREKTIIQLVSSGARNKEIAEGLCISEHTVKAHISSIFRKTHAR 201 Query: 220 NRIQAIAKA 228 NR++ + A Sbjct: 202 NRVELLRWA 210 >gi|163731572|ref|ZP_02139019.1| transcription regulatory protein degU, putative [Roseobacter litoralis Och 149] gi|161395026|gb|EDQ19348.1| transcription regulatory protein degU, putative [Roseobacter litoralis Och 149] Length = 218 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K LT RE + L G ++ ++A L +SV TV + + KL + Sbjct: 139 SLQPKEGEVREALTGREQTILLQLAQGKSNRDVATALDISVRTVETHRKNIKRKLGISST 198 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 199 AGLTRYAMEHGVL 211 >gi|119715235|ref|YP_922200.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119535896|gb|ABL80513.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 218 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 66/224 (29%), Gaps = 29/224 (12%) Query: 14 LQELSPRLHLIQNRIKARNFALY------TINSALDFPRRQQLICELHNYDLDSGDIPNI 67 L + I+ +++ + +A P + + L D I Sbjct: 15 LDDHELVRRGIRELLESEGDIVVIGESGLAAEAARRIPALRPDVAILDGRLPDGSGIDVC 74 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + ++ + + S + G I V+ Sbjct: 75 RDVRSVDPGI------------AALILTSYDDDEALFSAIMAGAAGY---ILKQVKGTDF 119 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + ML V+ L + + LT +E L+L G Sbjct: 120 VETVRRVAAGQSMLDP-------AVTAHVLDR-LRAGPRMDPSIEQLTAQEQRILELIGQ 171 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G T+ +IA L L+ TV Y+ S KL +R QA A + Sbjct: 172 GMTNRQIAAHLCLAEKTVKNYVSSMLAKLGLESRTQAAIFATKH 215 >gi|326382365|ref|ZP_08204057.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199095|gb|EGD56277.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 215 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + A G L ++ S +TERE L+ Sbjct: 102 LDAGALGYLLKDAPAEELLSAIRATARGETVLSPAIAATLVRRSSQPGPTITEREVEVLE 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++E+A+ + +S TV A+L KL R A+A AI I Sbjct: 162 LLARGMGNKELAKTMFISEGTVKAHLAHVYGKLGVDTRAGAVAAAIERRII 212 >gi|269961706|ref|ZP_06176067.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3] gi|269833571|gb|EEZ87669.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3] Length = 212 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G +S++IA L +S TV + + KLD + + A G Sbjct: 150 PLSRREEAVLKLVAQGNSSKKIATLLDISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209 Query: 233 YI 234 I Sbjct: 210 LI 211 >gi|284041315|ref|YP_003391245.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283820608|gb|ADB42446.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 219 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + ++ R LT RE L+L +T+ EIA +L +S TV+ + + KL A + Sbjct: 147 SVDRQPVEEIRQLTPRELEILKLIAQEFTTGEIANQLFISEATVDTHRRNMIQKLRAKSI 206 Query: 222 IQAIAKAIRFGYI 234 + AIR G + Sbjct: 207 VGLANFAIRHGLV 219 >gi|269128686|ref|YP_003302056.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313644|gb|ACZ00019.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 225 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G ++ EIA +L +S TV ++G KL +R+QA+ A G + Sbjct: 161 REREVLHLVARGLSNAEIAGRLHVSEATVKTHMGRILTKLGLRDRVQAVVFAYETGLV 218 >gi|254453006|ref|ZP_05066443.1| autoinducer-binding transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] gi|198267412|gb|EDY91682.1| autoinducer-binding transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] Length = 223 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 7/201 (3%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F Y +L P+ L N+ + Y + + W+ Sbjct: 12 GFTHYRSGRSLGDPQDW---VLLTNHGDSYMEEFLGKGHLYNAPMIRWALANTGACSWRW 68 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEVIIE 148 + E + + ++ V G AG + + + E I Sbjct: 69 MAEPGNLSEAKKIVVGFNLGQNVTAGYTVSFLSITERTKGATALTAKAGMSQDEVEEIWA 128 Query: 149 AHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 HG VI + + L + ++ +T+R+ LQ GDG T+++IA L L+ T+ Sbjct: 129 KHGDEITVINNVMHLKIQTLPYSQRHMTKRQREVLQWVGDGKTTQDIAILLELTPATIEK 188 Query: 208 YLGSATVKLDAVNRIQAIAKA 228 +L A LD QA+ KA Sbjct: 189 HLRLAREALDVETTAQAVLKA 209 >gi|185177925|pdb|3C3W|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr gi|185177926|pdb|3C3W|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr Length = 225 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 35/86 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L ++ LT++E + L L +G T+++IA+++ L+ TV Sbjct: 122 RSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 Y+ KL R QA A Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFATEL 207 >gi|270308742|ref|YP_003330800.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154634|gb|ACZ62472.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 238 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + L L GY++++I +KL + TV Y+ + KL NR Q A G Sbjct: 178 LTDRERTILNLLAKGYSNKDIGQKLDYTQTTVKKYVYNCMKKLGVSNRTQLAILANNNGL 237 >gi|113969001|ref|YP_732794.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|114048854|ref|YP_739404.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|117919108|ref|YP_868300.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|113883685|gb|ABI37737.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] gi|113890296|gb|ABI44347.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] gi|117611440|gb|ABK46894.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 209 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE---AHGACYQVI 157 + + + V ++ +++++ ++VI Sbjct: 69 LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLDKLKNAMLGHRVI 128 Query: 158 TDFLE--LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +D +E L++ +++A +LT RE LQ +G ++ I+E L +S TV ++ Sbjct: 129 SDEVEEYLYELKNAADEQEWISSLTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|15607984|ref|NP_215359.1| nitrate/nitrite response transcriptional regulatory protein NarL [Mycobacterium tuberculosis H37Rv] gi|15840258|ref|NP_335295.1| LuxR family DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|121636767|ref|YP_976990.1| putative nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660621|ref|YP_001282144.1| putative nitrate/nitrite response transcriptional regulatory protein NarL [Mycobacterium tuberculosis H37Ra] gi|148822052|ref|YP_001286806.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis F11] gi|167967564|ref|ZP_02549841.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis H37Ra] gi|215426107|ref|ZP_03424026.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis T92] gi|215429700|ref|ZP_03427619.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis EAS054] gi|218752509|ref|ZP_03531305.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis GM 1503] gi|219556707|ref|ZP_03535783.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis T17] gi|224989238|ref|YP_002643925.1| putative nitrate/nitrite response transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800134|ref|YP_003033135.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis KZN 1435] gi|254231154|ref|ZP_04924481.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis C] gi|254363780|ref|ZP_04979826.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis str. Haarlem] gi|254549820|ref|ZP_05140267.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185739|ref|ZP_05763213.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis CPHL_A] gi|260199864|ref|ZP_05767355.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis T46] gi|289442253|ref|ZP_06431997.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis T46] gi|289446409|ref|ZP_06436153.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis CPHL_A] gi|289555375|ref|ZP_06444585.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis KZN 605] gi|289568806|ref|ZP_06449033.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis T17] gi|289749363|ref|ZP_06508741.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis T92] gi|289752898|ref|ZP_06512276.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis EAS054] gi|289760976|ref|ZP_06520354.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis GM 1503] gi|297633361|ref|ZP_06951141.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis KZN 4207] gi|297730346|ref|ZP_06959464.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis KZN R506] gi|306774968|ref|ZP_07413305.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu001] gi|306782118|ref|ZP_07420455.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu002] gi|306783512|ref|ZP_07421834.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu003] gi|306787876|ref|ZP_07426198.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu004] gi|306792217|ref|ZP_07430519.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu005] gi|306796615|ref|ZP_07434917.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu006] gi|306802502|ref|ZP_07439170.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu008] gi|306806684|ref|ZP_07443352.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu007] gi|306966881|ref|ZP_07479542.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu009] gi|306971075|ref|ZP_07483736.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu010] gi|307078803|ref|ZP_07487973.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu011] gi|307083362|ref|ZP_07492475.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu012] gi|313657672|ref|ZP_07814552.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis KZN V2475] gi|81816327|sp|O53856|NARL_MYCTU RecName: Full=Probable transcriptional regulatory protein NarL gi|2916903|emb|CAA17650.1| POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN NARL [Mycobacterium tuberculosis H37Rv] gi|13880417|gb|AAK45109.1| DNA-binding response regulator, LuxR family [Mycobacterium tuberculosis CDC1551] gi|121492414|emb|CAL70882.1| Possible nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600213|gb|EAY59223.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis C] gi|134149294|gb|EBA41339.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis str. Haarlem] gi|148504773|gb|ABQ72582.1| putative nitrate/nitrite response transcriptional regulatory protein NarL [Mycobacterium tuberculosis H37Ra] gi|148720579|gb|ABR05204.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis F11] gi|224772351|dbj|BAH25157.1| putative nitrate/nitrite response transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321637|gb|ACT26240.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis KZN 1435] gi|289415172|gb|EFD12412.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis T46] gi|289419367|gb|EFD16568.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis CPHL_A] gi|289440007|gb|EFD22500.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis KZN 605] gi|289542560|gb|EFD46208.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis T17] gi|289689950|gb|EFD57379.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis T92] gi|289693485|gb|EFD60914.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis EAS054] gi|289708482|gb|EFD72498.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis GM 1503] gi|308216464|gb|EFO75863.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu001] gi|308325197|gb|EFP14048.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu002] gi|308331675|gb|EFP20526.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu003] gi|308335475|gb|EFP24326.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu004] gi|308339273|gb|EFP28124.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu005] gi|308342950|gb|EFP31801.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu006] gi|308346834|gb|EFP35685.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu007] gi|308350751|gb|EFP39602.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu008] gi|308355412|gb|EFP44263.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu009] gi|308359364|gb|EFP48215.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu010] gi|308363271|gb|EFP52122.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu011] gi|308366939|gb|EFP55790.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis SUMu012] gi|323720707|gb|EGB29783.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis CDC1551A] gi|328459872|gb|AEB05295.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis KZN 4207] Length = 216 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + LP + G+++ S Sbjct: 56 DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR 115 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ + A L+ RE L G + I Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL +R A+A+A+R + Sbjct: 176 AAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215 >gi|325964072|ref|YP_004241978.1| LuxR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323470159|gb|ADX73844.1| transcriptional regulator, LuxR family [Arthrobacter phenanthrenivorans Sphe3] Length = 545 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 66/226 (29%), Gaps = 15/226 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++++ L +++ R HL+ + A+ +A L Sbjct: 333 IRRAAGLADVATRRHLLPALVDIE-LAVPDPGAARQGAEELIRFARECPLPLVRAAAYQA 391 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 ++ S L W+ E V + + V L Sbjct: 392 DGAVRLEERDPAGASRALRQAWRLWLELGVPYEAARCRVLLGRA--------------CR 437 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G A+ +E A T L LT RE L+L Sbjct: 438 DLGDEASARMEFEAAHTEFLELGAAPAAAWTASLMRKGDDGGEPGPLTAREAEVLRLVAS 497 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G + IA +L LS TV ++ + +KL +R A A G Sbjct: 498 GQGNRAIAAQLFLSEKTVARHISNIFLKLGLSSRAAATRYAFEHGL 543 >gi|291618350|ref|YP_003521092.1| NarP [Pantoea ananatis LMG 20103] gi|291153380|gb|ADD77964.1| NarP [Pantoea ananatis LMG 20103] gi|327394743|dbj|BAK12165.1| nitrate/nitrite response regulator protein NarP [Pantoea ananatis AJ13355] Length = 210 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 11/135 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156 L + + V ++ E+++ Q Sbjct: 73 LRHEGISSRILVLTVSDARSDIYALVDAGADGYLLKDSEPEILLRQIMQALQGETVFSDA 132 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L + R LTERE +Q G +++++A L +S TV ++ + KL Sbjct: 133 VRHALSMRHNSDDPFRLLTERERGVMQEVARGLSNKDVAHALHISEETVKVHIRNVLRKL 192 Query: 217 DAVNRIQAIAKAIRF 231 D +R+ A I Sbjct: 193 DVRSRVAATIMWIER 207 >gi|288803368|ref|ZP_06408801.1| transcriptional regulator, LuxR family domain protein [Prevotella melaninogenica D18] gi|288334188|gb|EFC72630.1| transcriptional regulator, LuxR family domain protein [Prevotella melaninogenica D18] Length = 198 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++EIAEKL +S+ TV + + KL + A+ GY Sbjct: 133 LSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 192 Query: 234 I 234 I Sbjct: 193 I 193 >gi|302345392|ref|YP_003813745.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] gi|302150188|gb|ADK96450.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] Length = 204 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++EIAEKL +S+ TV + + KL + A+ GY Sbjct: 139 LSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|222106283|ref|YP_002547074.1| two component response regulator [Agrobacterium vitis S4] gi|221737462|gb|ACM38358.1| two component response regulator [Agrobacterium vitis S4] Length = 220 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 41/90 (45%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I+ A V+ + S A+ L++R+ L L +G T++EIA LG+S T Sbjct: 117 EILRAVREGDVVVQVPVSTNAIASYASPALSQRQLDVLHLLAEGRTNKEIAIILGISPFT 176 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ + L R A+ K I G + Sbjct: 177 VRIHVSAIFRALGVATRAGAVTKGIAMGLV 206 >gi|146319339|ref|YP_001199051.1| response regulator [Streptococcus suis 05ZYH33] gi|146321541|ref|YP_001201252.1| response regulator [Streptococcus suis 98HAH33] gi|253752368|ref|YP_003025509.1| response regulator protein [Streptococcus suis SC84] gi|253754194|ref|YP_003027335.1| response regulator protein [Streptococcus suis P1/7] gi|253756128|ref|YP_003029268.1| response regulator protein [Streptococcus suis BM407] gi|145690145|gb|ABP90651.1| Response regulator [Streptococcus suis 05ZYH33] gi|145692347|gb|ABP92852.1| Response regulator [Streptococcus suis 98HAH33] gi|251816657|emb|CAZ52298.1| response regulator protein [Streptococcus suis SC84] gi|251818592|emb|CAZ56426.1| response regulator protein [Streptococcus suis BM407] gi|251820440|emb|CAR47123.1| response regulator protein [Streptococcus suis P1/7] gi|319758772|gb|ADV70714.1| response regulator [Streptococcus suis JS14] Length = 200 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LT E+ L+L +G +++EIA +L LS TV Y+ S KL A NR Sbjct: 127 ELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENR 186 Query: 222 IQAIAKAIRFGYI 234 A+ A G++ Sbjct: 187 TAAVKVAQEKGWL 199 >gi|89070144|ref|ZP_01157473.1| DNA-binding response regulator, LuxR family protein [Oceanicola granulosus HTCC2516] gi|89044261|gb|EAR50407.1| DNA-binding response regulator, LuxR family protein [Oceanicola granulosus HTCC2516] Length = 211 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + LT RE + L G +++E+A L +SV TV + + KL + Sbjct: 134 SLRPRTTDGREPLTTREQTILLRLAQGRSNKEVALLLDISVRTVETHRKNIKRKLGISST 193 Query: 222 IQAIAKAIRFGYI 234 A+ G + Sbjct: 194 AGLTRYALEHGVL 206 >gi|163847172|ref|YP_001635216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525011|ref|YP_002569482.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668461|gb|ABY34827.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448890|gb|ACM53156.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 219 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 31/76 (40%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D L + LT RE L L G + IA KL L+ TV L KL Sbjct: 138 DLLRRNDTSPALNEVLTPRERDILALLAQGDDNRAIALKLSLAEKTVGNRLSEIFQKLGV 197 Query: 219 VNRIQAIAKAIRFGYI 234 NR QA A++ G + Sbjct: 198 SNRTQAAIVAVQRGLV 213 >gi|299138245|ref|ZP_07031424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298599491|gb|EFI55650.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 162 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G+++ EIA +L +S +TV + A KL A R QA+ + G + Sbjct: 102 TARELETLTLIARGFSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAVQRGKELGLL 161 >gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 216 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ E K + + LT E +QL G ++ EIA KL +S T+ +++ + Sbjct: 136 HKAGISLDEAHKIQVPSNVELTPTELKVIQLVAQGLSNREIASKLNVSQRTIESHVSNML 195 Query: 214 VKLDAVNRIQAIAKAIR 230 K NR + A+ Sbjct: 196 NKTSLHNRTELARWAME 212 >gi|332143243|ref|YP_004428981.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep ecotype'] gi|327553265|gb|AEA99983.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep ecotype'] Length = 217 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 16/136 (11%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-----------AHGA 152 L + I V + + + E I++ Sbjct: 74 LRDKGVDSRIIMLTVSDNDEDVVEAVRSGADGYLLKDMDPEDIVDKLREAALGKMVMSAK 133 Query: 153 CYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ L ++ S A +LT RE L+L G +++ IA +L +S TV ++ Sbjct: 134 LTEVLATALRKPERAGSRALASLTSRELEILKLIAKGMSNKLIARELDISDGTVKVHVKH 193 Query: 212 ATVKLDAVNRIQAIAK 227 KL+ +R++A Sbjct: 194 FLKKLNLRSRVEAAVW 209 >gi|330882972|gb|EGH17121.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 111 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 42/95 (44%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E ++ +LT RE L L G+++ EI EKLG Sbjct: 9 RVARGEEALNSTVSARLLRRMTERNTSGAALPESLTPRERQVLGLVAGGFSNREIGEKLG 68 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 69 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 103 >gi|325288921|ref|YP_004265102.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324964322|gb|ADY55101.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 36/54 (66%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE CL+L +G ++EIAE+LG++ TV ++G+ KL +R++A+ K Sbjct: 169 LTSREKDCLKLICEGLRNKEIAEELGITNRTVEYHVGNILEKLGVKSRLEALLK 222 >gi|312137639|ref|YP_004004975.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311886978|emb|CBH46287.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 206 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ S + + G + + + LT RE L Sbjct: 95 LDAGAIGYLLKDSAPPDIFGAIRDAVAGRSVLSPPVASRVLDRMRRPDQALTAREAELLS 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L +G T++E+ ++L +S TV +L KL +R A++ A+R Sbjct: 155 LLAEGLTNKELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202 >gi|88856025|ref|ZP_01130687.1| putative LuxR-family transcriptional regulator [marine actinobacterium PHSC20C1] gi|88814892|gb|EAR24752.1| putative LuxR-family transcriptional regulator [marine actinobacterium PHSC20C1] Length = 532 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + L++RE + + G +S +IAE L +SV+TV ++L + KL +R +AI Sbjct: 459 RPQDSFALSDRERAIARELVRGSSSAQIAESLYISVNTVKSHLKNIYRKLGVTSRAEAIH 518 Query: 227 KAIRFGY 233 K+ G Sbjct: 519 KSRELGL 525 >gi|330810002|ref|YP_004354464.1| two-component response regulator NarL [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378110|gb|AEA69460.1| Putative two-component response regulator NarL [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 215 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ L +++ LTERE L+ GY+++ I KLG++ TV ++ + Sbjct: 136 RVMAQALRSPPRQADV--ELTERERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLH 193 Query: 215 KLDAVNRIQAIAKAIRF 231 KL +R++A A+ Sbjct: 194 KLGLRSRVEAAVWAMEH 210 >gi|325272909|ref|ZP_08139236.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51] gi|324101953|gb|EGB99472.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51] Length = 665 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 41/79 (51%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ L ++ L+ RE + L+L G ++++I+E+L +S+HTV + K Sbjct: 586 LLGHLPALPSAPCGSSEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSK 645 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L R QA+AKA G + Sbjct: 646 LGVERRTQAVAKAKSLGLL 664 >gi|118471623|ref|YP_884743.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118172910|gb|ABK73806.1| transcriptional regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 395 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LTERE+ L+L G ++ EIAE+L ++ TV +++ K AVNR QAIA Sbjct: 330 RPPHRVELTERESEVLRLMVTGASNHEIAEQLVITEGTVKSHVKHILRKYGAVNRAQAIA 389 Query: 227 KAIR 230 A++ Sbjct: 390 WALQ 393 >gi|77361820|ref|YP_341395.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76876731|emb|CAI87953.1| putative transcriptional regulator, LuxR family [Pseudoalteromonas haloplanktis TAC125] Length = 218 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 142 ANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +++ A Q D L L + LT+RE + + L +G ++EIAE+L + Sbjct: 123 RRDIMCNALNRMLQFNKDALHKLTEGDIEPV-KLTKREKAIISLMSNGSKNKEIAEELSI 181 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 S HTV +L SA K NRI+ ++ A + Sbjct: 182 SPHTVKTHLYSAFRKTKCRNRIELLSWAQQH 212 >gi|317475113|ref|ZP_07934381.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316908757|gb|EFV30443.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 261 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL G S+EIA L +S++T+N + + +KL A N I+A+ A R Sbjct: 194 EPLTNRELCVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQRL 253 Query: 232 GYI 234 G + Sbjct: 254 GLL 256 >gi|300715237|ref|YP_003740040.1| two component transcriptional regulator, LuxR family [Erwinia billingiae Eb661] gi|299061073|emb|CAX58180.1| Two component transcriptional regulator, LuxR family [Erwinia billingiae Eb661] Length = 206 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLT 175 PV + K G F ++ + E +++A ++ D + +++ ++ +LT Sbjct: 85 TIPVTVRAMKAGAFEFLTK--PVDPERLLQAVEEALRISEDGMASSQQKLELTARHHSLT 142 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + LA G +++IA ++G+S T + K+ + + A R Sbjct: 143 PREGEVMLLAIGGLQNKQIAAEMGISEITAKVHKRRVMEKMQVRSLSDLVRAAERLNI 200 >gi|297196109|ref|ZP_06913507.1| two-component system regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719414|gb|EDY63322.1| two-component system regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 222 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G ++E+IA+++ +S T ++ A KL A +R Q + A Sbjct: 155 EELTNREREAVALVAQGLSNEQIADRMVISPLTAKTHVNRAMAKLHARDRAQLVILAYES 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 306 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLT+RE+ L+ +G T+ EIAE L +S TVN +L KL NR A A+R Sbjct: 244 NLTDRESEVLRWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTAAAGVALR 301 >gi|312884751|ref|ZP_07744452.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309367664|gb|EFP95215.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 211 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G++ +S+ L N + ++E + + + DF + + +LT ++ L Sbjct: 98 RHGAFGFIPKSSDMRALVNALNQVLEGNMFFPETVADFGSEKNRLAEKIASLTPQQHKVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + DG +++IA +L +S T+ A++ + KLD NR QA+ + Sbjct: 158 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVILIQQL 206 >gi|320007212|gb|ADW02062.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177 +G+V+ + L GA +I ++L + R +TER Sbjct: 105 AGASGFVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNYLDRVRDGGDVPDRAITER 164 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G++S+EIA L +SV TV + + KL +R++ AIR G I Sbjct: 165 EEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 221 >gi|302547311|ref|ZP_07299653.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302464929|gb|EFL28022.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 220 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LTERE L+L G ++ EIA +L + TV +++ S KL A +R Sbjct: 144 SAEGRAALERAALTEREGDVLRLVARGLSNAEIAARLVVGTETVKSHVSSVLAKLGARDR 203 Query: 222 IQAIAKAIRFGYI 234 QA+ A G++ Sbjct: 204 TQAVIAAYESGFV 216 >gi|271965453|ref|YP_003339649.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508628|gb|ACZ86906.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEK 197 A + A +V+ L ++ + LT+RE L L G G ++ EIA+ Sbjct: 116 RRAAAGEPLLAPSVLRRVVERALAAEEQAAVQVPAGLTDRELEVLALVGVGLSNAEIADA 175 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + V TV ++ +A KL NR QA A R G + Sbjct: 176 LHVGVTTVKTHVSTAMDKLGLRNRTQAAVVAHRIGLV 212 >gi|218671400|ref|ZP_03521070.1| two-component response regulator protein [Rhizobium etli GR56] Length = 223 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166 + I+ V G ++E ++ A E + + V + ++ Sbjct: 85 MLSMHDSREYISSSVMRGAAGYVLKDVSTEEIVAAIETVADGGTYFSSGVFDALM--GER 142 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L L G ++ EIAE LG+S T + + KL I Sbjct: 143 VEEGSDPLTPRERDTLGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLIR 202 Query: 227 KAIRFGY 233 A+ G Sbjct: 203 YALDHGI 209 >gi|198277378|ref|ZP_03209909.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135] gi|198269876|gb|EDY94146.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135] Length = 215 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQ G+ + EIAE L +S +T+ + S KL+A N + + KAI Sbjct: 148 EQLTLREMEVLQAIAKGFNTREIAELLHVSNNTIETHRKSLMSKLEARNAVDLVLKAINL 207 Query: 232 GYI 234 G I Sbjct: 208 GII 210 >gi|218900478|ref|YP_002448889.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543280|gb|ACK95674.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 200 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NR Sbjct: 128 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 187 Query: 222 IQAIAKAIRFGYI 234 I+AI A G+I Sbjct: 188 IEAITIAEEKGWI 200 >gi|88861227|ref|ZP_01135860.1| putative transcriptional regulator, LuxR family protein [Pseudoalteromonas tunicata D2] gi|88816820|gb|EAR26642.1| putative transcriptional regulator, LuxR family protein [Pseudoalteromonas tunicata D2] Length = 218 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAARNLTERE 178 N V+ L+L N+ + ++ L K + +LT+RE Sbjct: 101 ATDNADVVMKGIRLLLDNQ-LWYRRNIMCNALSRLLHFNKDNILQLTDTLAEPISLTKRE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + + L G ++EIA++L +S HTV +L SA K NRI+ ++ A + Sbjct: 160 KAIIVLMSKGCKNKEIADELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|110637722|ref|YP_677929.1| response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110280403|gb|ABG58589.1| response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 220 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L++ DG + EIA+ LG+S+ T+ + + KL N ++ + AI Sbjct: 159 ELTKREKGILKMITDGKNNREIADGLGISIRTIETHRANIMKKLKVKNAVELVRIAIDEK 218 Query: 233 YI 234 + Sbjct: 219 IV 220 >gi|323165527|gb|EFZ51314.1| putative csgAB operon transcriptional regulatory protein [Shigella sonnei 53G] Length = 142 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 82 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 136 >gi|303256662|ref|ZP_07342676.1| nitrate/nitrite response regulator protein NarL [Burkholderiales bacterium 1_1_47] gi|330999299|ref|ZP_08323016.1| nitrate/nitrite response regulator protein NarL [Parasutterella excrementihominis YIT 11859] gi|302860153|gb|EFL83230.1| nitrate/nitrite response regulator protein NarL [Burkholderiales bacterium 1_1_47] gi|329575157|gb|EGG56708.1| nitrate/nitrite response regulator protein NarL [Parasutterella excrementihominis YIT 11859] Length = 214 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 34/80 (42%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + E + LTERE S L+L G T++EI + L +S TV ++ Sbjct: 132 MNQALAECLREESFSKERRVSELTEREKSVLKLIAQGKTNKEIGKALEISDGTVKVHVKH 191 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL +R++A A Sbjct: 192 VLHKLSFRSRVEAAVWAKEQ 211 >gi|229489109|ref|ZP_04382975.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] gi|229324613|gb|EEN90368.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] Length = 209 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 42/107 (39%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S + V G L ++ LT RE+ L L Sbjct: 99 DAGAIGYLLKDSTPDEIFGAVRGAVAGRSVLSPAVASRLVQQMQRPQEALTARESELLSL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +G T+ E+ + L +S TV +LG KL R A++ A+R Sbjct: 159 LAEGMTNRELGKALFISEATVKTHLGHIYAKLGVDTRSAAVSVALRR 205 >gi|258650899|ref|YP_003200055.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554124|gb|ACV77066.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 241 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +LT RE L L G ++ EIA L +S TV +++G+ KLD NR+ Sbjct: 154 DRAVVGPGGSLTGREHEVLLLLARGRSNAEIATDLVVSEVTVKSHVGAVLHKLDLRNRVA 213 Query: 224 AIAKAIRFGYI 234 A+ A G I Sbjct: 214 AVIYAYEHGLI 224 >gi|166031115|ref|ZP_02233944.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC 27755] gi|166028962|gb|EDR47719.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC 27755] Length = 207 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 Q+I+ EL +++S+ A +TE+E + ++L DG +++EIA ++ LS T+ Y Sbjct: 123 FGTQIISRLPELLERKSAFDYATYEITEKERAVMKLVADGKSNKEIAGEMFLSEGTIRNY 182 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + KL+ +R Q +R Sbjct: 183 ISGILDKLNLRDRTQLAVFYLRN 205 >gi|42780178|ref|NP_977425.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736096|gb|AAS40033.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 214 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLTE+E L+ G +++IA +G++ TV AYL + KL +R +A+A +I Sbjct: 151 NLTEKELFVLKAIARGNKNKDIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIEKK 210 Query: 233 YI 234 I Sbjct: 211 LI 212 >gi|332671209|ref|YP_004454217.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340247|gb|AEE46830.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 207 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G + L ++ LT RE L Sbjct: 96 AGATGYLLKDTPRDQLVAGVRAAARGESALSPSVARRLVQQVRGEQERLTAREQEVLAGV 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ I +L ++ TV +L A KL +R +A+ AI G + Sbjct: 156 ARGLSNAGIGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 204 >gi|329733822|gb|EGG70146.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU028] Length = 218 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIRFGYI 234 A++ + Sbjct: 210 ALKKKLL 216 >gi|329726465|gb|EGG62928.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU144] Length = 218 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIRFGYI 234 A++ + Sbjct: 210 ALKKKLL 216 >gi|319401681|gb|EFV89890.1| transcriptional regulatory protein degU [Staphylococcus epidermidis FRI909] Length = 218 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIRFGYI 234 A++ + Sbjct: 210 ALKKKLL 216 >gi|296505776|ref|YP_003667476.1| two-component response regulator YocG [Bacillus thuringiensis BMB171] gi|296326828|gb|ADH09756.1| two-component response regulator YocG [Bacillus thuringiensis BMB171] Length = 200 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|242243808|ref|ZP_04798252.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242232744|gb|EES35056.1| transcriptional regulator [Staphylococcus epidermidis W23144] Length = 218 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIRFGYI 234 A++ + Sbjct: 210 ALKKKLL 216 >gi|57865448|ref|YP_189537.1| DegU family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|251811904|ref|ZP_04826377.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875194|ref|ZP_06284067.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367099|ref|ZP_06613771.1| LuxR family DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81673409|sp|Q5HLK6|NREC_STAEQ RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|57636106|gb|AAW52894.1| transcriptional regulatory protein DegU, putative [Staphylococcus epidermidis RP62A] gi|251804583|gb|EES57240.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295959|gb|EFA88480.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318829|gb|EFE59203.1| LuxR family DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329734541|gb|EGG70852.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU045] Length = 218 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIRFGYI 234 A++ + Sbjct: 210 ALKKKLL 216 >gi|27468887|ref|NP_765524.1| response regulators of two-component regulatory [Staphylococcus epidermidis ATCC 12228] gi|81842572|sp|Q8CN75|NREC_STAES RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|27316435|gb|AAO05610.1|AE016750_215 response regulators of two-component regulatory [Staphylococcus epidermidis ATCC 12228] Length = 218 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIRFGYI 234 A++ + Sbjct: 210 ALKKKLL 216 >gi|31792032|ref|NP_854525.1| nitrate/nitrite response transcriptional regulatory protein NarL [Mycobacterium bovis AF2122/97] gi|31617619|emb|CAD93729.1| POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN NARL [Mycobacterium bovis AF2122/97] Length = 216 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++ + A L+ RE L G + IA +L ++ TV ++ KL +R Sbjct: 143 EIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDR 202 Query: 222 IQAIAKAIRFGYI 234 A+A+A+R + Sbjct: 203 AAAVAEAMRQRLL 215 >gi|86139948|ref|ZP_01058513.1| Two Component Transcriptional Regulator, LuxR family protein [Roseobacter sp. MED193] gi|85823366|gb|EAQ43576.1| Two Component Transcriptional Regulator, LuxR family protein [Roseobacter sp. MED193] Length = 210 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR-NLT 175 L +G + + SE L +G + + KR A R LT Sbjct: 93 LDAGASGILTYNSEMSDLRAAARRVMNGDNYVQPDMAMDIFAKLRQAEAKRKEAERLRLT 152 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE+ ++ G T+ +I+ +L +S TV Y+GS K A NR++ + +A R G Sbjct: 153 ARESQVVRHLMQGMTNRQISAELNISEKTVKHYVGSLKDKFGAANRLEVVLEAQRLG 209 >gi|302036525|ref|YP_003796847.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300604589|emb|CBK40921.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 214 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V+ L + + LT R+ LQL +G+T ++IA L +S TV + G + Sbjct: 133 VVESMLRGIDGGAPSGPELTTRQREVLQLLAEGHTVKDIAGTLNISPRTVEFHKGQIMEQ 192 Query: 216 LDAVNRIQAIAKAIRFGY 233 L+ ++ + A+ G Sbjct: 193 LNLHTTVELVKYALAQGL 210 >gi|59712516|ref|YP_205292.1| DNA-binding response regulator in two-component regulatory system with NarQ [Vibrio fischeri ES114] gi|59480617|gb|AAW86404.1| DNA-binding response regulator in two-component regulatory system with NarQ [Vibrio fischeri ES114] Length = 203 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 11/131 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 L + + V +I + +I + + Sbjct: 66 LHALRNEGVTCPIVILTVSDNKQDIKTLIKAGADGYLLKDSEPDELIALLKEAMKGGKAY 125 Query: 161 -------LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LE + LT RE LQ G ++++A+KL +S TV ++ S Sbjct: 126 SEQVKTCLEEDAQGDDKLSQLTARELEILQHVAKGMRNKQVADKLFISEATVKVHMKSLL 185 Query: 214 VKLDAVNRIQA 224 KL+ +R+ A Sbjct: 186 KKLNVKSRVAA 196 >gi|49480425|ref|YP_039344.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036499|ref|ZP_03103894.1| DNA-binding response regulator [Bacillus cereus W] gi|218906530|ref|YP_002454364.1| DNA-binding response regulator [Bacillus cereus AH820] gi|300117868|ref|ZP_07055635.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301056821|ref|YP_003795032.1| DNA-binding response regulator [Bacillus anthracis CI] gi|49331981|gb|AAT62627.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195990832|gb|EDX54805.1| DNA-binding response regulator [Bacillus cereus W] gi|218538999|gb|ACK91397.1| DNA-binding response regulator [Bacillus cereus AH820] gi|298724732|gb|EFI65407.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300378990|gb|ADK07894.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 200 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|41409369|ref|NP_962205.1| hypothetical protein MAP3271c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398189|gb|AAS05819.1| hypothetical protein MAP_3271c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 222 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + L ++ LTE+E + L L +G T+ +IA ++ L+ TV Y Sbjct: 125 LDNRAAAALMAKLRGSAAQADPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNY 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + KL R QA A + Sbjct: 185 VSRLLAKLGMERRTQAAVFASKL 207 >gi|53712701|ref|YP_098693.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60680860|ref|YP_211004.1| putative transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|253563324|ref|ZP_04840781.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|265762790|ref|ZP_06091358.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|52215566|dbj|BAD48159.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60492294|emb|CAH07059.1| putative transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|251947100|gb|EES87382.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|263255398|gb|EEZ26744.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|301162406|emb|CBW21951.1| putative transcriptional regulatory protein [Bacteroides fragilis 638R] Length = 225 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E L+ G T++EIA + LS HT+N++ + KL N +A A+R G Sbjct: 158 LTPTEKIILKEIASGKTTKEIAAEKHLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|158315636|ref|YP_001508144.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111041|gb|ABW13238.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 249 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS------AARNL 174 L G+++ + +LA V A V L F L Sbjct: 117 LRAGARGFLLKDAGPDLLAQAVHAAACGDALIAPNVTARLLATFAGSGPAPVPAQPVEAL 176 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+RE L G T+ EIA L +S+ TV ++ S KL A NR++ A + G Sbjct: 177 TDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGARNRVEIALWAYQTG 234 >gi|302036302|ref|YP_003796624.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300604366|emb|CBK40698.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 216 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---------QVITDFLELFKKRSSAARNL 174 L GY++ ++ L E+ I+A + + + + ++ L Sbjct: 96 LRAGAAGYLLKDADRNEL--ELAIKAVWRSETYLTPSMTKFAVDAYCQQGEAQTGPLARL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T R+ LQL +G ++++IA++L LSV TV + +LD + + AIR G + Sbjct: 154 TGRQREILQLIAEGCSTKQIAQRLDLSVKTVETHRAQLMERLDIHDVPGLVRLAIRTGLV 213 >gi|253572144|ref|ZP_04849548.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251838324|gb|EES66411.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 230 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G S+EI++ L +SVHTVN + + K++ N ++AI A + G Sbjct: 168 KLTKREVEILKLVNKGMFSKEISDSLSISVHTVNNHRQNILQKMNTDNVVEAINYARKLG 227 Query: 233 YI 234 + Sbjct: 228 LL 229 >gi|224540370|ref|ZP_03680909.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus DSM 14838] gi|224518021|gb|EEF87126.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus DSM 14838] Length = 219 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + + +++ + + LT E S L+ G T++EIA + L Sbjct: 119 ASRKERFICNHVSNLLLSGSNASPVRHTLKDDLLTPAERSVLKEIALGKTTKEIAAEKNL 178 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTVN++ + KL N +A A++ G + Sbjct: 179 SFHTVNSHRKNIFRKLGVNNVHEATKYAMKAGIV 212 >gi|215445032|ref|ZP_03431784.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T85] gi|289756976|ref|ZP_06516354.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T85] gi|294996369|ref|ZP_06802060.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|289712540|gb|EFD76552.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T85] gi|326904890|gb|EGE51823.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis W-148] Length = 882 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190 E A +KR + +LT E ++L +G + Sbjct: 778 EAMGDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLS 837 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +++IA++L +S TV +L KL +R+Q + +A R G Sbjct: 838 NKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879 >gi|196229129|ref|ZP_03127994.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226361|gb|EDY20866.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 168 SSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L GY +EI E +G+S HTVN++ KL +R Q Sbjct: 144 PPPAAQSGEGLTDREREVLDLLAQGYLYKEIGEIMGISTHTVNSHNRHIYEKLQVRSRGQ 203 Query: 224 AIAK 227 A+AK Sbjct: 204 AVAK 207 >gi|116694572|ref|YP_728783.1| response regulator [Ralstonia eutropha H16] gi|113529071|emb|CAJ95418.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 235 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 38/74 (51%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ +R A L+ RE L L G G T+ EIA+ L LS TV ++ + KL + Sbjct: 161 AQIHARRLVGASPLSAREIEILSLVGKGLTNREIADLLSLSRLTVECHIRNIYKKLAVHS 220 Query: 221 RIQAIAKAIRFGYI 234 R QA+ +A G + Sbjct: 221 RTQAVFEARAHGLL 234 >gi|94967299|ref|YP_589347.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549349|gb|ABF39273.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 217 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +F + + E+ V+ + + L+ERE L Sbjct: 108 GDDPSKLFAAIRAVADGELAFS-DEVARGVLNAMAAEPQPAPTNLARLSERERQISFLVA 166 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 GY +++IA +L +S +TV +L S K A +R++ A+ Sbjct: 167 RGYKNKDIANELTISENTVKRHLQSIFSKTGARDRLELAVLAL 209 >gi|333020553|gb|EGK39813.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-227] Length = 190 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 130 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184 >gi|308397497|ref|ZP_07669369.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu012] gi|308366829|gb|EFP55680.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu012] Length = 340 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190 E A +KR + +LT E ++L +G + Sbjct: 236 EAMGDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLS 295 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +++IA++L +S TV +L KL +R+Q + +A R G Sbjct: 296 NKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 337 >gi|307565431|ref|ZP_07627920.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS 21A-A] gi|307345881|gb|EFN91229.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS 21A-A] Length = 200 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++EIA+KL +S+ TV + + KL + A+ GY Sbjct: 135 LSNREIEVLSLIVQGMINKEIADKLNISLTTVITHRKNIMDKLGMRSVSALTIYAVMHGY 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|307327309|ref|ZP_07606496.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886988|gb|EFN17987.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 212 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L + + A G +L + R LT+RET L Sbjct: 100 AGAIGYLLKDTTREQLVDAIHAAARGETVLAPRVAEKLVARMRRPVQEPLTDRETEVLGA 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI +L ++ TV +L KLD +R +A+ A+ G + Sbjct: 160 VADGLTNAEIGRRLVIAEATVKTHLLRLFAKLDVNDRTRAVVVAMERGLL 209 >gi|297190931|ref|ZP_06908329.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150692|gb|EFH30738.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 83 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 33/76 (43%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + NLT RE LA G T+EEIA + +S T ++ A KL A Sbjct: 1 MARPPDRSTARGMENLTRREREVTALAARGLTNEEIAAHMVISPFTAKTHISRAMNKLGA 60 Query: 219 VNRIQAIAKAIRFGYI 234 +R Q + A G + Sbjct: 61 RDRAQLVVFAYESGLV 76 >gi|312200594|ref|YP_004020655.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231930|gb|ADP84785.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 214 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 151 GACYQVITDFLELFKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 V +E F +R LT+RE + L G G +++EIA +L +S T Sbjct: 126 LLSPAVTRRVIEAFARRPVGPGAPDLDGLTDREREVMGLVGHGLSNDEIAARLVISPATA 185 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ VKL A +R Q A + G + Sbjct: 186 RTHVSRVMVKLGARDRAQLAVLANQAGLV 214 >gi|239979053|ref|ZP_04701577.1| two-component system response regulator [Streptomyces albus J1074] gi|291450931|ref|ZP_06590321.1| two-component system response regulator [Streptomyces albus J1074] gi|291353880|gb|EFE80782.1| two-component system response regulator [Streptomyces albus J1074] Length = 227 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + ++ + L T RE L G +++EIA +L +S TV Sbjct: 136 LIASFLAQSGHGADERPGAREERLAALTGREREVLVHVAGGLSNDEIAGRLQVSPLTVKT 195 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL A +R Q + A G + Sbjct: 196 HVNRAMAKLGARDRAQLVVTAYETGLV 222 >gi|226225820|ref|YP_002759926.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089011|dbj|BAH37456.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 213 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 11/140 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---------- 154 R+ L + + H G + L + + + Sbjct: 69 LRRVRAKGLTTRVLVLSMHDETHLVGQALSAGADGYLLKDSMDDELFFAIESVLRGQRYL 128 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 D L + R +LT RE LQL +G T+ +AE L +S HT + + Sbjct: 129 AAAIDRARLQESRMRPV-SLTAREREVLQLIANGLTTSAVAEALNISPHTATRHRANLMQ 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ N+++ + A G I Sbjct: 188 KLNVHNQVELVRIAASQGLI 207 >gi|225869438|ref|YP_002745386.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225702714|emb|CAX00841.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 199 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE E L+L D Y++E+I++KL +S TV+ ++ + KL+ +R+ A+ +AIR Sbjct: 139 LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKL 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|225871440|ref|YP_002747387.1| response regulator [Streptococcus equi subsp. equi 4047] gi|225700844|emb|CAW95568.1| putative response regulator [Streptococcus equi subsp. equi 4047] Length = 199 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE E L+L D Y++E+I++KL +S TV+ ++ + KL+ +R+ A+ +AIR Sbjct: 139 LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKL 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|254516347|ref|ZP_05128406.1| putative transcriptional regulator [gamma proteobacterium NOR5-3] gi|219674770|gb|EED31137.1| putative transcriptional regulator [gamma proteobacterium NOR5-3] Length = 934 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +++I +L +S HTV +L KL+ NR AIAKA+R G Sbjct: 867 LTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKAMRVGL 926 Query: 234 I 234 + Sbjct: 927 L 927 >gi|187923376|ref|YP_001895018.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714570|gb|ACD15794.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 292 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 85/230 (36%), Gaps = 24/230 (10%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++ L+ L ++ + +A+++ +RQ+ L ++ D I + Sbjct: 9 DAERRDGLKALLRQIDRLARFNEAQDW-----RQVERTLKRQRPDLLLVDW-EDWMSIAD 62 Query: 67 ILIE--TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + Y D + + + P + + +E V+ + + + A + Sbjct: 63 VRHLLSHYPDLRVAVLSDQISPAAVRDLMDEGVLGVVPRDTDPCL---IVRAFEMVLLGG 119 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + G + L + + + +R+ A L+ R+ ++ Sbjct: 120 HYVPPGALAL---DPPLPPD-------ITIRPFDEK-SPPPRRARLANVLSPRQQQIMRC 168 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ IA LG+S TV +L S +L A NR A+ A+ G++ Sbjct: 169 VHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216 >gi|117618841|ref|YP_856117.1| LuxR family DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560248|gb|ABK37196.1| DNA-binding response regulator, LuxR family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 212 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 14/124 (11%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSS------- 169 + V ++ L + E A V+T L + Sbjct: 83 VILTVSDARQDVVALLKAGADGYLLKDTEPEMLLAQLADVMTGKQILSEPLRPYLENIYE 142 Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE L+ G +++++A L +S TV ++ S KL+A +R++ Sbjct: 143 LDHLQQKLESLTRREMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRVE 202 Query: 224 AIAK 227 A Sbjct: 203 AAVM 206 >gi|145596642|ref|YP_001160939.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305979|gb|ABP56561.1| response regulator receiver [Salinispora tropica CNB-440] Length = 235 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 32/64 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +TERE L L G G ++ EIA++L LS TV Y+ KL A +R+ + A Sbjct: 151 PLSGITEREREVLTLVGRGLSNSEIADELRLSHATVKTYITRLLSKLGARDRVHLVIAAY 210 Query: 230 RFGY 233 G Sbjct: 211 EAGL 214 >gi|21244146|ref|NP_643728.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109777|gb|AAM38264.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 923 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA L LS +TV +L + Sbjct: 827 RALTIQALLERLSGDDDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 887 LYRKLDARSREGALAQALQRGLL 909 >gi|16331921|ref|NP_442649.1| protein kinase [Synechocystis sp. PCC 6803] gi|1001838|dbj|BAA10720.1| putative protein kinase [Synechocystis sp. PCC 6803] Length = 369 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + L G +IAE+L +S TV ++ KL+A NR QAI +A G+ Sbjct: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQGF 368 Query: 234 I 234 I Sbjct: 369 I 369 >gi|325283395|ref|YP_004255936.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324315204|gb|ADY26319.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 235 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 140 MLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 +++++ EA A + L + +LT +E LQL G ++ Sbjct: 122 DASSDLLNEAIHAAARGEVRLHPQAARRLVRDFRAPDMREHLTCKEVEVLQLIARGLNNK 181 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IA +L +S TV +++ KL+ +R QA A++ G Sbjct: 182 GIAAQLDISETTVKSHVSRLLGKLELESRTQAALYALKTGL 222 >gi|169628613|ref|YP_001702262.1| putative two-component system response regulator LuxR [Mycobacterium abscessus ATCC 19977] gi|169240580|emb|CAM61608.1| Putative two-component system response regulator LuxR [Mycobacterium abscessus] Length = 218 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLT 175 L G+++ S L V A G V + L +++ +A LT Sbjct: 97 LRAGAAGFILKDSPAEELVRAVHAVARGEAYLDPAVTSRVLNAYRRAPAAVSGDAQDKLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G T+ EIAE+L +S TV +++G VKLD +R AI A G + Sbjct: 157 ARELDVLALIASGATNSEIAEQLVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHGIV 215 >gi|194366116|ref|YP_002028726.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348920|gb|ACF52043.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 217 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L+ G +++ I E++ +S TV A++ S KL +R A+ +A+R Sbjct: 147 DRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRR 206 Query: 232 GYI 234 G I Sbjct: 207 GII 209 >gi|86742706|ref|YP_483106.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86569568|gb|ABD13377.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 275 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 14/217 (6%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRR---QQLICELHNYDLDSGDIPNILIETYGDDF 76 L + + +++ + L D Sbjct: 50 VLDAFSAHLGYEHLT-FSLGRHPSLQLELSEPRTRGILPELMARYLDRYAGRDVFAHKFA 108 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF------PVRLGFHKNG 130 ++ Q + + G+ I PV + Sbjct: 109 RQLMQEYGQAVLPQLAEMALGNDRCGEFLEDFLPQNDISDKILVWLDTSLPVHG--YIGV 166 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 F +E++ ++ LE + + A L+ RE + DG+ Sbjct: 167 VATGGRTFDHRDHELLRGLRPTLSYLLRSHLE--HQVAPAGIVLSIREHEIARYVADGWP 224 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + IA +LG+S TV ++ K +R + Sbjct: 225 NRLIARELGISEWTVKRHITHVLAKCGVRSRTELAIM 261 >gi|15840308|ref|NP_335345.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31792078|ref|NP_854571.1| LuxR family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|121636813|ref|YP_977036.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660668|ref|YP_001282191.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148822100|ref|YP_001286854.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis F11] gi|167968338|ref|ZP_02550615.1| hypothetical transcriptional regulatory protein, luxR-family [Mycobacterium tuberculosis H37Ra] gi|215402688|ref|ZP_03414869.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215410477|ref|ZP_03419285.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215426158|ref|ZP_03424077.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T92] gi|215429747|ref|ZP_03427666.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|218752554|ref|ZP_03531350.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|224989284|ref|YP_002643971.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|254363821|ref|ZP_04979867.1| hypothetical transcriptional regulatory protein (probably luxR-family) [Mycobacterium tuberculosis str. Haarlem] gi|254549867|ref|ZP_05140314.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260204093|ref|ZP_05771584.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis K85] gi|289573518|ref|ZP_06453745.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] gi|289744621|ref|ZP_06503999.1| transcriptional regulatory protein, luxR-family [Mycobacterium tuberculosis 02_1987] gi|289749412|ref|ZP_06508790.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis T92] gi|289752945|ref|ZP_06512323.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289761024|ref|ZP_06520402.1| transcriptional regulatory protein (probably luxR-family) [Mycobacterium tuberculosis GM 1503] gi|298524383|ref|ZP_07011792.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306775016|ref|ZP_07413353.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu001] gi|306783561|ref|ZP_07421883.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu003] gi|306787927|ref|ZP_07426249.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu004] gi|306796663|ref|ZP_07434965.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu006] gi|306802551|ref|ZP_07439219.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|306966928|ref|ZP_07479589.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|306971124|ref|ZP_07483785.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] gi|307078852|ref|ZP_07488022.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu011] gi|38258680|sp|P59969|Y914_MYCBO RecName: Full=Putative HTH-type transcriptional regulator Mb0914c gi|13880470|gb|AAK45159.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis CDC1551] gi|31617666|emb|CAD93775.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|121492460|emb|CAL70928.1| Probable transcriptional regulatory protein (probably luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149335|gb|EBA41380.1| hypothetical transcriptional regulatory protein (probably luxR-family) [Mycobacterium tuberculosis str. Haarlem] gi|148504820|gb|ABQ72629.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148720627|gb|ABR05252.1| hypothetical transcriptional regulatory protein, luxR-family [Mycobacterium tuberculosis F11] gi|224772397|dbj|BAH25203.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289537949|gb|EFD42527.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] gi|289685149|gb|EFD52637.1| transcriptional regulatory protein, luxR-family [Mycobacterium tuberculosis 02_1987] gi|289689999|gb|EFD57428.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis T92] gi|289693532|gb|EFD60961.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289708530|gb|EFD72546.1| transcriptional regulatory protein (probably luxR-family) [Mycobacterium tuberculosis GM 1503] gi|298494177|gb|EFI29471.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216369|gb|EFO75768.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu001] gi|308331660|gb|EFP20511.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu003] gi|308335381|gb|EFP24232.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu004] gi|308342922|gb|EFP31773.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu006] gi|308350664|gb|EFP39515.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|308355324|gb|EFP44175.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|308359263|gb|EFP48114.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] gi|308363173|gb|EFP52024.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu011] gi|323720599|gb|EGB29677.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length = 882 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190 E A +KR + +LT E ++L +G + Sbjct: 778 EAMGDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLS 837 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +++IA++L +S TV +L KL +R+Q + +A R G Sbjct: 838 NKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879 >gi|258592846|emb|CBE69155.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 237 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 28/62 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET LQ G EIAE L LSV TV + KL NR + A+R Sbjct: 174 RLTLRETQVLQHIAQGLPDREIAESLQLSVRTVENHAARIRKKLQVDNRTALVRYALRAH 233 Query: 233 YI 234 I Sbjct: 234 LI 235 >gi|290955461|ref|YP_003486643.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644987|emb|CBG68073.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L V A G L + L+ERE ++L Sbjct: 110 AGARGYILKAGPPEELFRAVRAAAAGGMGLAPEAAGHLAGHLADPGAALSEREIEVVRLL 169 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA L L+ T+ +L KL NR +++A+R G + Sbjct: 170 ALGRSNRAIAAALHLTEATIKTHLVRVYRKLGTENRASTVSEAVRRGLL 218 >gi|291614280|ref|YP_003524437.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584392|gb|ADE12050.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 219 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V+ +L+ K + A+ LT RE L+L +G ++ IA L +SV TV + Sbjct: 132 IAEKVVNGYLDGGKGINPASAWDTLTLREREVLKLIAEGQGNKHIASYLCVSVKTVEKHR 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ N + AI G + Sbjct: 192 SNLMRKLNLHNAAVLTSYAIEKGMV 216 >gi|257064489|ref|YP_003144161.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256792142|gb|ACV22812.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 258 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 1/108 (0%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQ 183 G+ + + + + + + LT RE L Sbjct: 149 RALSRGWRLLDGQRDRRIASDSPAKRRMTQERYSRIVKSTIEPAKPKGDALTPREQEVLV 208 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 DG ++ EIA +G+S TV ++ K + +R + IA+ Sbjct: 209 HITDGRSNAEIARIMGISEATVKKHVSHIFDKYNVFSRTELIARVRER 256 >gi|227832318|ref|YP_002834025.1| putative transcription regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183824|ref|ZP_06043245.1| putative transcription regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453334|gb|ACP32087.1| putative transcription regulator [Corynebacterium aurimucosum ATCC 700975] Length = 219 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E + + A LT RE L+L GYT EI ++L +SV TV + + K NR Sbjct: 147 EPEEGQDPAVDALTRRELEVLRLLARGYTYREIGKQLFISVKTVETHASNILRKTQQSNR 206 Query: 222 IQAIAKAIRFGY 233 Q A Sbjct: 207 HQLTRWATSRDL 218 >gi|68163278|dbj|BAE02666.1| hypothetical transcription regulator [Pseudomonas sp. MCI3434] Length = 260 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 65/242 (26%), Gaps = 30/242 (12%) Query: 8 GKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALD--FPRRQQLICELHNYDLDSG 62 G+ +L + + + L+ + N+ + ++ + + D Sbjct: 15 GRVIETLDQPNFWTALVRLLGRYVPVDNWVVLIYSAGKPQVLAESPGADGGMDSLFQDYL 74 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D F + + R + + V Sbjct: 75 -----KGLYLLDPFYIANREAPQSGLVRLQDVAPECFEQTDYYQRYFRVNIVTDEVHINV 129 Query: 123 RLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--------- 172 +L + + S+ L ++ + +F++ A Sbjct: 130 QLDNQRTLSLSLGSQCRFSLEQGALLGLVRPWVAALMRQRLMFERDPGEAPQQPDNWQSR 189 Query: 173 ----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE L G +++EIA KL +S TV + KL ++ Sbjct: 190 LEAAAEQLTTPLTGREMEVALLLLSGCSNKEIARKLVISAETVKVHRKHMYGKLGIKSQS 249 Query: 223 QA 224 + Sbjct: 250 EL 251 >gi|332851497|ref|ZP_08433494.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332866803|ref|ZP_08437207.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|332874937|ref|ZP_08442788.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|332729950|gb|EGJ61281.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332734411|gb|EGJ65531.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|332736880|gb|EGJ67856.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 227 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 154 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 213 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 214 KLTHLAIRYGLI 225 >gi|300814540|ref|ZP_07094796.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511367|gb|EFK38611.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 208 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++EIA KLG+S +TV ++ K R Q ++ G Sbjct: 143 QLTPREIQVLRLLTTGVGNDEIASKLGISENTVKTHIAHLLSKTGFKTRTQLAIQSRITG 202 Query: 233 YI 234 ++ Sbjct: 203 FV 204 >gi|258593175|emb|CBE69506.1| conserved protein of unknown function; putative transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 300 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q+ L +K S +LT RE + L G T+ IAE+L +S TV ++ Sbjct: 195 LVRQQLAQTQLTASEKTVSPVGDLTRRELQVVTLMRTGATTAAIAEQLFISKTTVRNHIQ 254 Query: 211 SATVKLDAVNRIQAIAK 227 + KL +R++A+A Sbjct: 255 NIFSKLKVHSRLEAVAY 271 >gi|296139697|ref|YP_003646940.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027831|gb|ADG78601.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 229 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 42/121 (34%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 AG + + S + + IT + + Sbjct: 102 GLHAGARGYLTKNAGRAEIAAAISAAAAGQSVLDPAVQQRLLASITATPAPAQAAGTPPV 161 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET LQL +G + +IA +L +S TV ++ + K +R A+ A G Sbjct: 162 DLTPRETEVLQLIAEGLANRDIAARLFVSESTVKTHINNLFAKAHLRDRAHAVRYAFDTG 221 Query: 233 Y 233 Sbjct: 222 I 222 >gi|145299701|ref|YP_001142542.1| two-component system nitrate/nitrite response regulator NarP [Aeromonas salmonicida subsp. salmonicida A449] gi|142852473|gb|ABO90794.1| two-component system nitrate/nitrite response regulator NarP [Aeromonas salmonicida subsp. salmonicida A449] Length = 212 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 14/124 (11%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSS------- 169 + V ++ L + E A V+T L + Sbjct: 83 VILTVSDARQDVVALLKAGADGYLLKDTEPEMLLAQLADVMTGKQILSEPLRPYLENIYE 142 Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE L+ G +++++A L +S TV ++ S KL+A +R++ Sbjct: 143 LDHLQQKLESLTSREMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRVE 202 Query: 224 AIAK 227 A Sbjct: 203 AAVM 206 >gi|71906325|ref|YP_283912.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71845946|gb|AAZ45442.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 203 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 138 FLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + ++ ++EA ++ D +K + LT RE + L GY + EI Sbjct: 106 EKPIDHDKMLEAIEQAFNSQSLMQDRKSASEKANYLLGQLTPREQEVMNLVVGGYHNREI 165 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 AEKLG+SV TV + KLD + + Sbjct: 166 AEKLGISVRTVEVHKAHVMSKLDVDSVADLVRL 198 >gi|326772918|ref|ZP_08232202.1| two-component system response regulator TcsR7 [Actinomyces viscosus C505] gi|326637550|gb|EGE38452.1| two-component system response regulator TcsR7 [Actinomyces viscosus C505] Length = 230 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ RE L L + T+++IA +L LS T+ +++ + KL +R Sbjct: 157 RKEASPLPFGVTLSTRELEVLALISEALTNKQIANRLNLSEATIKSHVSAIIAKLGVPDR 216 Query: 222 IQAIAKAIRFGYI 234 + A A++ G + Sbjct: 217 VGAAVFAMQHGLV 229 >gi|300790264|ref|YP_003770555.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799778|gb|ADJ50153.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 206 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 +GY++ + LAN + A G + +L + R+ + L+ RE L+L Sbjct: 96 AGASGYLLKDASRAELANAIRAAARGETVLAPSVAGKLVNRVRNPEPQPLSAREVEVLRL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +I L +S TV +L KL +R A+ A+ + Sbjct: 156 VAKGGTNADIGRALHISEATVKTHLLRVFGKLGVSDRTAAVTTAMARNLL 205 >gi|298242114|ref|ZP_06965921.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555168|gb|EFH89032.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 17/133 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAH------------GACYQVITDFL 161 + + + + ++ A ++I F Sbjct: 87 LVVTMFEDDDSVFAAMRAGARGYLLKDADRDELVRAIKAVSQGEAIFSPAIAQRMIRYFS 146 Query: 162 ELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + S+ A +LTERE L L G ++ IA++ LS+ TV ++ + KL + Sbjct: 147 ALPRTASAIAFPDLTERERQILHLIAQGESNTAIAKRFTLSLKTVQNHVSNIFSKLQVAD 206 Query: 221 RIQAIAKAIRFGY 233 R QAI +A G Sbjct: 207 RAQAIVRARDAGL 219 >gi|294632463|ref|ZP_06711023.1| two-component system response regulator [Streptomyces sp. e14] gi|292835796|gb|EFF94145.1| two-component system response regulator [Streptomyces sp. e14] Length = 228 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 40/109 (36%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S LT+RE L Sbjct: 119 AGATGYLLKAERPDELFTAIHSAAAGRTALSAPVAHRVMARMRSPRPTLTDRERDILGQL 178 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +IA+ L LS TV +LG KL R A+A A + Sbjct: 179 SRGLTNRDIAKALFLSEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 227 >gi|256391311|ref|YP_003112875.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357537|gb|ACU71034.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 267 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 12/225 (5%) Query: 11 SSSLQELSPRLH-LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + L E RL +++ + ++ + L Y + Sbjct: 39 AGDLAEFRERLVTALRSWFGYSGVTV--LHGETAADAVDRGCGVLAGYSAEFLATYAAQG 96 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D F L + + T I + A + Sbjct: 97 WEREDP--FRDEGFLQRLAEAGVVRLTDISEGARFREEFLVPRGIADKAAMLIDAAPSGV 154 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQ------VITDFLELFKKRSSAAR-NLTERETSCL 182 +V + A + + + +S +LT RE Sbjct: 155 LWVGLAVPDGVGRVSDRDLAVLRVLRRHLTPLAVEQLARNRSREASRGDWDLTPREWDVA 214 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LA G T+ +IA +L + V TV +L +R Q Sbjct: 215 DLAAQGLTNRQIAARLFIGVDTVKKHLTRVLAATSCGSRTQLALL 259 >gi|194438019|ref|ZP_03070112.1| transcriptional regulator CsgD [Escherichia coli 101-1] gi|194422955|gb|EDX38949.1| transcriptional regulator CsgD [Escherichia coli 101-1] Length = 190 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 130 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184 >gi|37528381|ref|NP_931726.1| hypothetical protein plu4562 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787819|emb|CAE16934.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 238 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 23/224 (10%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 KKS ++ EL RL N I F Y+I +P + + N ++++ N Sbjct: 12 IKKSKTMPELEKRLL---NAINYLGFEFYSIYQEEKYPFTTKKYVLITNLNIETASNYNQ 68 Query: 68 LIETYGDDFLFHFNSGLLPIIWQ-----------SIQEETVIESSGQLSVRLEGGLLPFA 116 D + + +P + E LS++++G + Sbjct: 69 DNNHDSDQLMNGDYTFSIPSVCNDKISKNTDFTIEKSNSNKNEVKNSLSIKIKGYHGERS 128 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 F V + ++ V+ C + + K L+ Sbjct: 129 --IFSVARKEG-----TISHNEILNKAGVLGILANECIKTFNNLKNKKDKIIIPT--LST 179 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 RE ++ +G TS EIA+ L +S TVN ++ + KL N Sbjct: 180 REVEVIRWTCEGKTSAEIADILDISTRTVNFHINNVMEKLVVPN 223 >gi|289670915|ref|ZP_06491990.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 235 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + A + H V + N+ + Sbjct: 86 AAGDGHEAGWLMPPRPADIREARVPIHALGTTHGMLCVAWNESRPAPGNDDVQALQAFAL 145 Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E ++R L++RE L L G T+ +A +LG++ TV Sbjct: 146 LLPAMVAEPAKPIATRRRKPVQDDRLGALSKRERQVLSLLPRGLTNATLAAELGIAPGTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL+ +R QA A++ G Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|289641792|ref|ZP_06473950.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508436|gb|EFD29377.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 402 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + + + A+G + A LT RE L+L G T+ Sbjct: 300 LAATMNDIEEPIRFGAYGMNHGFAQPVRPFHDTPWPADSRLTRREIDVLRLMAAGNTNAR 359 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 IA++L +S TV +++ KL+A +R +A++ Sbjct: 360 IADRLIISEGTVKSHVKHILRKLNAASRTEAVSI 393 >gi|228925087|ref|ZP_04088207.1| Two-component protein Kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834569|gb|EEM80088.1| Two-component protein Kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 592 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|56962495|ref|YP_174221.1| two-component response regulator of nitrate reduction [Bacillus clausii KSM-K16] gi|56908733|dbj|BAD63260.1| two-component response regulator of nitrate reduction [Bacillus clausii KSM-K16] Length = 215 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L G+ ++EIAEKL +SV TV A+ KL+ +R + + A++ Sbjct: 152 GLSQREVEILPLIAKGFGNKEIAEKLYVSVKTVEAHKAKIMEKLNLKSRPELVEYALKKK 211 Query: 233 YI 234 + Sbjct: 212 LL 213 >gi|270262435|ref|ZP_06190706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043119|gb|EFA16212.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 206 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 9/120 (7%) Query: 119 AFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 P+ + K G F S+ L+ A + + + + EL ++ Sbjct: 85 TIPLSVQAMKAGAHEFLTKPVASDDLLKAVQEALNLAAENSDQLREHYELKQRHL----T 140 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G +++IA +LG+S TV + K+ + + A R Sbjct: 141 LTPREQEVLELTIKGLMNKQIAAELGVSEITVKVHRRRVMDKMQVRSLADLVRHAERLNL 200 >gi|300781389|ref|ZP_07091243.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533096|gb|EFK54157.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 228 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 47/106 (44%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + S +++ + + + L A + LTERE L G G Sbjct: 115 DAIRTVASGDAVISPRATNRIVAKLSEAPAETIPLSTADRRAIQELTEREHEILIAVGRG 174 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +T+ EIAE+L +S+ TV ++G +K + +R+ A A R G + Sbjct: 175 WTNTEIAERLFISMPTVKTHVGRVLMKTHSRDRVHAALFAYRTGLV 220 >gi|269929059|ref|YP_003321380.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788416|gb|ACZ40558.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 214 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G ++ EIAE L +S TV ++ KL +R+QA+ AI+ G Sbjct: 142 PLSTREVEILDCMVRGLSNREIAEALFISEQTVKNHMSRLFHKLHVRDRLQAVLFAIQHG 201 Query: 233 YI 234 ++ Sbjct: 202 WV 203 >gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 213 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 11/94 (11%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR-----------NLTERETSCLQLAGDGYTSEEIAE 196 E + L + + LT ET +QL G + EIA+ Sbjct: 116 ELAAQVQSCLRQADRLLQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIAD 175 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L +S TV +++ + K NR + AI+ Sbjct: 176 HLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQ 209 >gi|21222068|ref|NP_627847.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|4753877|emb|CAB42040.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] Length = 248 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G G ++ E A++L +S TV +L KL +R QA+ A G Sbjct: 180 LTGREAEVLQLVGRGLSNAEAADRLFISEATVKTHLNRTMTKLGLTSRAQAVVVAYETGL 239 Query: 234 I 234 + Sbjct: 240 V 240 >gi|312278646|gb|ADQ63303.1| Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative [Streptococcus thermophilus ND03] Length = 200 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L++RE L + G T++EIAE L LS T+ Y+ + KLDA NR Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTIRNYMTAILTKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 A+ A ++ Sbjct: 187 TDAVRIAKEKDWL 199 >gi|302557464|ref|ZP_07309806.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302475082|gb|EFL38175.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 230 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195 ++A + A ++I F +A L T+RE L L G G +++EI Sbjct: 130 RVVAAGDALLAPRITRRLIGQFTSQRVAAQAAEDRLSVLTQREREVLALVGQGLSNDEIG 189 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS T ++ A VKL A +R Q + A R G + Sbjct: 190 AELCLSPATARTHVSHAMVKLGARDRAQLVVVAYRTGLV 228 >gi|291537088|emb|CBL10200.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis M50/1] Length = 241 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L+ RE ++L GY+++EIA +L +S TV +L + KL R Q Sbjct: 187 ADLLSGREQEIVRLVRKGYSNQEIAGQLLISEATVKKHLSNIFEKLGISRRTQL 240 >gi|239932624|ref|ZP_04689577.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440983|ref|ZP_06580373.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343878|gb|EFE70834.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L +S TV +++ + KL A +R QA+ A G Sbjct: 156 RLTEREAEVLRLMARGLSNAEIAARLVVSTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215 Query: 233 YI 234 ++ Sbjct: 216 FV 217 >gi|239831204|ref|ZP_04679533.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823471|gb|EEQ95039.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 213 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 4/127 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166 + I+ + G ++ ++ A + V L+ ++ Sbjct: 85 MLSMHDSREYISTSIMRGASGYVLKDVSTAEIVAAIHAVASGGTYFSSGVSEALLDSGER 144 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S L+ RE L L +G ++ EIA +LG+S TV + + KL + Sbjct: 145 KS---EGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTR 201 Query: 227 KAIRFGY 233 AI Sbjct: 202 YAIENRL 208 >gi|254507428|ref|ZP_05119563.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] gi|219549684|gb|EED26674.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] Length = 209 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A + + + + +LT RE L+ G ++ +IAE +S TV ++L Sbjct: 127 AAQLLFHYRNMVETQSAPVTVDLTTREIHILRSLMTGASNSQIAEDQFISEFTVKSHLYQ 186 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL NR+QA A A + Sbjct: 187 IFKKLCVKNRVQAAAWARQH 206 >gi|167586712|ref|ZP_02379100.1| DNA-binding response regulator NarL [Burkholderia ubonensis Bu] Length = 76 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q Sbjct: 3 AGAPAALTPREHDIVRAIARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVY 62 Query: 228 AIRFGY 233 A+ G Sbjct: 63 AVEQGL 68 >gi|116672252|ref|YP_833185.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612361|gb|ABK05085.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 426 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 161 LELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L L A L +RE LQL G + IA KL +S +TV +L + K+ Sbjct: 349 LPLDPPARPLADVSDWKLGDRELEVLQLLAAGQRNRAIAAKLHISENTVKFHLRNIYRKV 408 Query: 217 DAVNRIQAIAKAIRFG 232 A +R +AIA A G Sbjct: 409 GATSRTEAIAMAHSNG 424 >gi|253800086|ref|YP_003033087.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|289555327|ref|ZP_06444537.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|297633408|ref|ZP_06951188.1| transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN 4207] gi|297730393|ref|ZP_06959511.1| transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN R506] gi|313657720|ref|ZP_07814600.1| transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN V2475] gi|253321589|gb|ACT26192.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|289439959|gb|EFD22452.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|328459824|gb|AEB05247.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 4207] Length = 882 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIA 195 E A +KR + +LT E ++L +G ++++IA Sbjct: 783 EDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLSNKDIA 842 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++L +S TV +L KL +R+Q + +A R G Sbjct: 843 KRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879 >gi|315500154|ref|YP_004088957.1| two component transcriptional regulator, luxr family [Asticcacaulis excentricus CB 48] gi|315418166|gb|ADU14806.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 239 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +T RE L L G + +E A L +S HTV ++ + KL +R Sbjct: 166 AEPELAEDAPGITPREIELLSLLAKGLSYKEAASVLDISHHTVGTHVKAIYRKLAVNSRS 225 Query: 223 QAIAKAIRFGYI 234 +A+ +A+R G I Sbjct: 226 EAVFEAVRSGLI 237 >gi|150389353|ref|YP_001319402.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949215|gb|ABR47743.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 220 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE +L +G ++EIA +L ++ T Y+ S K+ +R A+ Sbjct: 159 EKLSEREIEIAKLMLEGLNNKEIASELFITQGTAKNYISSIYSKIGVRDRTNAVLFFRSH 218 Query: 232 GY 233 G+ Sbjct: 219 GF 220 >gi|186687224|ref|YP_001870367.1| two component LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469527|gb|ACC85326.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 217 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ E + L DG +++ IAE+L ++ TV ++ KLD +R+ A+ +A + Sbjct: 147 DHLSATEMQIISLMADGSSNKLIAERLFITESTVKGHINKIFAKLDVKDRVNALIEASKL 206 Query: 232 GYI 234 GYI Sbjct: 207 GYI 209 >gi|15599116|ref|NP_252610.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116051961|ref|YP_789196.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296387556|ref|ZP_06877031.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|9950105|gb|AAG07308.1|AE004809_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587182|gb|ABJ13197.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 906 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 9/146 (6%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 ++ E E +++ G P+ ++ + A Sbjct: 768 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 819 Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ E + SA L+ RE + L+L G +++EI+E+L +S+HTV ++ Sbjct: 820 CPGAQRMRALLPEPPAEPAGSAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 879 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL R QA+A+A G + Sbjct: 880 ARHINDKLGVERRTQAVARAKHMGLL 905 >gi|328880752|emb|CCA53991.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 227 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +++ LTERE + L G G ++ EIA +L +S T ++ A VKL A Sbjct: 146 AARSKAPGAAASLGALTEREREVMALVGIGLSNGEIARRLVVSPLTAKTHVSRAMVKLGA 205 Query: 219 VNRIQAIAKAIRFGYI 234 +R Q + A G + Sbjct: 206 RDRAQLVVLAYESGLV 221 >gi|294667407|ref|ZP_06732625.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602848|gb|EFF46281.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 923 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA L LS +TV +L + Sbjct: 827 RALTIQALLERLSGDDDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 887 LYRKLDARSREGALAQALQRGLL 909 >gi|256390216|ref|YP_003111780.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356442|gb|ACU69939.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 203 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 5/105 (4%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGY 189 +L + L +R A LT RE L+ G Sbjct: 98 ARGYLHKDASRAELRATVSQALADPTWRLAPRRLRPAEIGAVPTLTAREIQVLEGMSHGR 157 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EI L LS TV + KL A +R A+A R+G + Sbjct: 158 SNAEIGRDLFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202 >gi|50120831|ref|YP_049998.1| transcriptional regulator NarP [Pectobacterium atrosepticum SCRI1043] gi|49611357|emb|CAG74804.1| nitrate/nitrite response regulator [Pectobacterium atrosepticum SCRI1043] Length = 210 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 10/133 (7%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 L + I V ++ A E ++++ + Sbjct: 71 LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDSIRSSDAFSEQV 130 Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + R S LTERE LQ G ++++IA L +S TV ++ + Sbjct: 131 RDALRHRIAIKETPSPFTVLTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLR 190 Query: 215 KLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 191 KLNVRSRVAATVL 203 >gi|320333040|ref|YP_004169751.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754329|gb|ADV66086.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 220 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G ++++IA++LG+S TV +L + KL A NR +A+ +A + Sbjct: 158 PLTAREQAILGALSAGASNKQIAQRLGISDGTVKTHLSNLFFKLGAANRTEAVYRARQLR 217 Query: 233 YI 234 + Sbjct: 218 LL 219 >gi|229493089|ref|ZP_04386884.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229320119|gb|EEN85945.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 219 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++ + L+ RE L L G + IA +L L+ TV ++ KL +R Sbjct: 146 EVRRRSEPSGPTLSAREREVLGLIAQGASIPVIASQLFLAPSTVKTHVQRLYEKLGVNDR 205 Query: 222 IQAIAKAIRFGYI 234 A+A A+R G + Sbjct: 206 GAAVAAAMRQGLL 218 >gi|297624009|ref|YP_003705443.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165189|gb|ADI14900.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 211 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 154 YQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +++ + L + LTERE S L G T +EIAE+LG+S TV Y A Sbjct: 129 ARLLAELARDLSESGPYRHVRLTERERSVLARIAQGCTYKEIAEELGISDKTVATYRERA 188 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL R + + A++ G I Sbjct: 189 AEKLGLKTRAELVRYALQHGLI 210 >gi|282865368|ref|ZP_06274420.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559841|gb|EFB65391.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 39/84 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ L+ERE ++L G T+ EIA +L +SV TV +LG Sbjct: 131 AITVRLLRRLNNAVPTSREPHTALSEREKDLVRLVARGLTNAEIATELTISVGTVKTHLG 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL A NR++ A A G + Sbjct: 191 NVQTKLSARNRVEIAAWAWESGLV 214 >gi|254776638|ref|ZP_05218154.1| transcriptional regulator, LuxR family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 523 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ A + + + + LT RE L G +++EI Sbjct: 417 ARRLRGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEI 476 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L +S T ++ K+ NRI A A++ G + Sbjct: 477 AAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGLV 516 >gi|297196049|ref|ZP_06913447.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723312|gb|EDY67220.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + + LT RE L+L +G +S++IAE L +SV TV + + KL +R Sbjct: 145 RARQGHETPDQILTAREEEVLKLVAEGRSSKDIAEILFISVKTVQRHRANLLRKLGLRDR 204 Query: 222 IQAIAKAIRFGYI 234 + AIR G I Sbjct: 205 LDLTRYAIRAGLI 217 >gi|197335139|ref|YP_002156737.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri MJ11] gi|197316629|gb|ACH66076.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri MJ11] Length = 203 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 11/131 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156 L + + V +I + +I + Sbjct: 66 LHALRNEGVTCPIVILTVSDNKQDIKTLIKAGADGYLLKDSEPDELIALLKEAMKGGKAY 125 Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + LE + LT RE LQ G ++++A++L +S TV ++ S Sbjct: 126 SEQVKACLEEDAQGDDKLSQLTARELEILQHVAKGMRNKQVADQLFISEATVKVHMKSLL 185 Query: 214 VKLDAVNRIQA 224 KL+ +R+ A Sbjct: 186 KKLNVKSRVAA 196 >gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 231 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 36/101 (35%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + E I Q + +LT RE S L L +G ++ Sbjct: 129 SLQATSENARLEEIARDIRELKQQVGQQNTFTTTPPPIKIDLTPREQSVLDLVAEGLMNK 188 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA +L SV V Y+ K +R + + A++ G Sbjct: 189 EIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 229 >gi|118464557|ref|YP_883346.1| LuxR family transcriptional regulator [Mycobacterium avium 104] gi|118165844|gb|ABK66741.1| transcriptional regulator, LuxR family protein [Mycobacterium avium 104] Length = 523 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ A + + + + LT RE L G +++EI Sbjct: 417 ARRLRGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEI 476 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L +S T ++ K+ NRI A A++ G + Sbjct: 477 AAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGLV 516 >gi|332978517|gb|EGK15227.1| response regulator [Psychrobacter sp. 1501(2011)] Length = 211 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ L ++ S L+ERE + + + ++IA++L +SV TVN Y Sbjct: 129 VAEQLADMLLTDNEE--SPFDRLSEREKQVAMMVVNCQSPQQIADQLFVSVKTVNTYRYR 186 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 K+ + ++ A+R G I Sbjct: 187 IFEKVGVDSDVKLTHLAMRHGLI 209 >gi|239927379|ref|ZP_04684332.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435723|ref|ZP_06575113.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291338618|gb|EFE65574.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 222 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177 +GYV+ + L GA +I ++L + + + LT R Sbjct: 104 AGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRDGEEAPEQLLTPR 163 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G++S+EIAE L +SV TV + + KL +R+ AIR G + Sbjct: 164 EEEVLKLVAEGHSSKEIAELLFISVKTVQRHRENLLHKLGLRDRLDLTRYAIRAGLV 220 >gi|167622824|ref|YP_001673118.1| two component LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352846|gb|ABZ75459.1| two component transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 211 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157 L + + V ++ +++++ ++VI Sbjct: 69 LNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLDMLKNAMLGHRVI 128 Query: 158 TDFLE--LFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ ++ L + SS NLT RE LQ +G ++ +AE+L +S TV ++ Sbjct: 129 SNTVQEYLSELNSSVNEQEWIENLTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 232 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 36/101 (35%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + E I Q + +LT RE S L L +G ++ Sbjct: 130 SLQATSENARLEEIARDIRELKQQVGQQNTFTTTPPPIKVDLTPREQSVLDLVAEGLMNK 189 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA +L SV V Y+ K +R + + A++ G Sbjct: 190 EIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230 >gi|157960657|ref|YP_001500691.1| two component LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845657|gb|ABV86156.1| two component transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 209 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157 L + + V ++ ++++E ++VI Sbjct: 69 LNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEMLKNAMLGHRVI 128 Query: 158 TDFLE--LFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +D ++ L + SS NLT RE LQ +G ++ +AE+L +S TV ++ Sbjct: 129 SDTVQEYLSELNSSVNEQEWLENLTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|150398035|ref|YP_001328502.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150029550|gb|ABR61667.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 262 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L G ++ IA++LGLS +TV ++ + K++ NR +A ++ R Sbjct: 188 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFR 244 >gi|148653231|ref|YP_001280324.1| two component LuxR family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148572315|gb|ABQ94374.1| two component transcriptional regulator, LuxR family [Psychrobacter sp. PRwf-1] Length = 211 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ L ++ S L+ERE + + + ++IA++L +SV TVN Y Sbjct: 129 VAEQLADMLLTDNEE--SPFDRLSEREKQVAMMVVNCQSPQQIADQLFVSVKTVNTYRYR 186 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 K+ + ++ A+R G I Sbjct: 187 IFEKVGVDSDVKLTHLAMRHGLI 209 >gi|330891428|gb|EGH24089.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 222 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 43/95 (45%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E ++ +LT RE L L G G+++ EI EKLG Sbjct: 120 RVARGEEALNSTVSARLLRRMTERNTSGAALPESLTPRERQVLGLVGGGFSNREIGEKLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|312131027|ref|YP_003998367.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311907573|gb|ADQ18014.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 210 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +++S LT+RET L L + Y+++EIA+KL LS+ TV A+ S KLD N Sbjct: 138 LSGRKNSIEVKLTKRETEILALIANEYSNQEIADKLFLSIRTVEAHRNSLNQKLDIKNTA 197 Query: 223 QAIAKAIRFGYI 234 + +A+ G I Sbjct: 198 GLVKEALLRGLI 209 >gi|298113037|gb|ADI58626.1| AsuR1 [Streptomyces nodosus subsp. asukaensis] Length = 216 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQLAGDGYT 190 F ++V+ + L + ++ LT RE L+L +G + Sbjct: 91 FGDAVSDVMAGKFYVSTALARRVLRQNGQPATETQPWGTPGTGLTPRELQVLRLVAEGLS 150 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++ A +L +S H V +G+ KL+ NR A+ +A+ +G + Sbjct: 151 NKQAARRLQISEHGVKRLVGNVLAKLNCPNRTLAVVRALEYGLL 194 >gi|300022129|ref|YP_003754740.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299523950|gb|ADJ22419.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 223 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + L SS LT RE L+ +G ++ IA KLG+S TV ++ + Sbjct: 129 LAEVLKSALLSPVSAGSSGEELLTPREREILECLAEGLNNKTIARKLGISDATVKVHVKN 188 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL+ +R++A R Sbjct: 189 VLRKLNLASRLEAAVWKHRL 208 >gi|239502065|ref|ZP_04661375.1| response regulator [Acinetobacter baumannii AB900] Length = 211 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMIVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|239816996|ref|YP_002945906.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803573|gb|ACS20640.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 200 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 38/79 (48%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ E + ++ L++R+T + + G ++ +IA L +S HTV +L + Sbjct: 119 LMAGSEEADEPALASNSKLSKRQTQLIAMLDKGMSNRDIATDLEISEHTVKVHLWRLFRR 178 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R QA+ A G + Sbjct: 179 LGVKSRTQALHYARTNGLL 197 >gi|254442908|ref|ZP_05056384.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] gi|198257216|gb|EDY81524.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 37/80 (46%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ + + S NLT RE L G ++++IA KLGLSV T++ + S Sbjct: 115 EVLRSVVRSIDRSSERTDNLTAREREVLTFIASGNSNKDIALKLGLSVKTIDNHRCSMMR 174 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD N A+ + Sbjct: 175 KLDLHNVADITRYAVEHRIV 194 >gi|146307561|ref|YP_001188026.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145575762|gb|ABP85294.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 907 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 10/138 (7%) Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 A P+ A + + E + Sbjct: 777 RATLEEAWQRGYRRLFQDDALWLLPLWD------AWCSAEPKCAAAWQGLAELLREQCRR 830 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + + ++++ RE L+L G ++ +IA+ + LS T+ +L + KL Sbjct: 831 MA----IDPESFEENQDVSHREREILRLVAAGLSNRDIAQTVHLSEATIKWHLHNLFSKL 886 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+ K G + Sbjct: 887 GVRSRTQAVLKGKSLGLL 904 >gi|319761227|ref|YP_004125164.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317115788|gb|ADU98276.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 224 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 1/122 (0%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKK 166 + + +++ E++ + A Q + Sbjct: 96 AALRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPEPDPGPMP 155 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A L+ RE L+ G +++EIA +L ++ TV ++ KL +R+QA Sbjct: 156 PDDPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAV 215 Query: 227 KA 228 A Sbjct: 216 YA 217 >gi|239930016|ref|ZP_04686969.1| erythropoiesis-stimulating protein [Streptomyces ghanaensis ATCC 14672] gi|291438353|ref|ZP_06577743.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291341248|gb|EFE68204.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 328 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 68/225 (30%), Gaps = 13/225 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K S+ ++ R+ + + A + ++ + D + D L Sbjct: 115 KLRSMDQIQSRIEHLADTCTTEIAAFV-----PGGGQSERHLEAARPLDRAATDRGVRLR 169 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 + D + + E + + + P Sbjct: 170 YVFLDS----ARNCPATRAYAEWLTERGGQVRTAPRLPSRMLVYDRVTAILPTDPAAADL 225 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G ++ + A + + + + + + E + L+L +G Sbjct: 226 GALVLHGTGAVAALMTLFDQTWQQSCPLGEAVATRTDDDRP----SPPEQAVLELLAEGM 281 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T + +A +LG+SV TV +L A +R +A A G++ Sbjct: 282 TDDAMARQLGVSVRTVRRITADLMHRLGARSRFEAGVLAHSRGWV 326 >gi|256422119|ref|YP_003122772.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037027|gb|ACU60571.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 222 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K + A LT RE L G+ +EIA L +S+ TV ++ + KL +R A+ Sbjct: 157 KPNPALEALTSREKEILDQLSKGFLYKEIASNLFISIETVRRHVHNIYEKLHVRSRTDAV 216 Query: 226 AK 227 K Sbjct: 217 NK 218 >gi|41409450|ref|NP_962286.1| hypothetical protein MAP3352c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398281|gb|AAS05902.1| hypothetical protein MAP_3352c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 523 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ A + + + + LT RE L G +++EI Sbjct: 417 ARRLRGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEI 476 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L +S T ++ K+ NRI A A++ G + Sbjct: 477 AAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGLV 516 >gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E +Q G + EIAE+L +S TV +++ + K + NR + AI Sbjct: 164 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222 >gi|293607035|ref|ZP_06689378.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292814525|gb|EFF73663.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 218 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 41/79 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + IT ++ R+LT ++ LQ+ G G +++IA +L +S T+ A++ + Sbjct: 131 RAITAAPARAPTLAATVRDLTPQQFRVLQMVGAGLLNKQIAHELQISEATIKAHMTAIMR 190 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL NR QA+ A R G Sbjct: 191 KLRVTNRTQAVLIAGRLGL 209 >gi|291482971|dbj|BAI84046.1| hypothetical protein BSNT_00932 [Bacillus subtilis subsp. natto BEST195] Length = 213 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTE+E L+ G S+ IA L +S TV + L S KL A +R +A+ A++ G Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKG 207 Query: 233 YI 234 + Sbjct: 208 IL 209 >gi|260185786|ref|ZP_05763260.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis CPHL_A] gi|289446457|ref|ZP_06436201.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis CPHL_A] gi|289419415|gb|EFD16616.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis CPHL_A] Length = 882 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIA 195 E A +KR + +LT E ++L +G ++++IA Sbjct: 783 EDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLSNKDIA 842 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++L +S TV +L KL +R+Q + +A R G Sbjct: 843 KRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879 >gi|256789340|ref|ZP_05527771.1| two component system response regulator [Streptomyces lividans TK24] gi|289773226|ref|ZP_06532604.1| two component system response regulator [Streptomyces lividans TK24] gi|289703425|gb|EFD70854.1| two component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ ++ LTERE + L G G ++EEIA +L +S T + Sbjct: 130 GVTRRLIAEFAARSKEPAAPGEMARLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|325922351|ref|ZP_08184126.1| Transcriptional regulator, LuxR family protein [Xanthomonas gardneri ATCC 19865] gi|325547170|gb|EGD18249.1| Transcriptional regulator, LuxR family protein [Xanthomonas gardneri ATCC 19865] Length = 506 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEE 193 EV+ +A ++ + + + LT RE L L +G +E Sbjct: 395 AAIEEVMQDASWFSQTLLEKLANVRRANRPSQAQSCGIAELTGRERDVLGLLAEGLADKE 454 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IA++L ++ +TV ++ + K+D +R +AI A G+ Sbjct: 455 IAQQLSVAPNTVRNHVAALYSKIDVHSRGEAIVWARERGF 494 >gi|310640405|ref|YP_003945163.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309245355|gb|ADO54922.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 199 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA+ + G EL + LTERE + L L Sbjct: 94 AGTHGYLLKDSPSEELASSIRSIMAGRRIYA----PELVDDAYAEVNPLTEREKTVLALI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L L+ TV Y+ KL NRI+AI + G+ Sbjct: 150 ADGKNTKEIAGELFLTTGTVRNYISVILDKLGVSNRIEAITRFNEKGW 197 >gi|297162688|gb|ADI12400.1| two component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ + AA LTERE + L G G ++EEIA +L +S T + Sbjct: 133 GVTRRLIAEFAARSKEPAPAAVLAELTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 192 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + +KL A +R Q + A G + Sbjct: 193 VSRTMIKLGARDRAQLVVLAYESGLV 218 >gi|296270643|ref|YP_003653275.1| LuxR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093430|gb|ADG89382.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 74 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L++RET ++L G+++ EIA +L LS TV ++ KL +R AI Sbjct: 11 LSKRETEVMELIASGHSNGEIARRLFLSEKTVKNHVNRIYAKLGVRSRTSAI 62 >gi|302535883|ref|ZP_07288225.1| response regulatory protein [Streptomyces sp. C] gi|302444778|gb|EFL16594.1| response regulatory protein [Streptomyces sp. C] Length = 207 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 37/110 (33%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G GY++ L + A G + LT+RE L Sbjct: 96 GAGATGYLLKAERPEELFAAIHSAAAGRTTLSAPVASRVMAHMRGTRPTLTDRELDILGQ 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A+A A + Sbjct: 156 LARGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 205 >gi|166713294|ref|ZP_02244501.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] Length = 826 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 41/83 (49%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA +L LS +TV +L + Sbjct: 730 RALTIQALLERLSGDDDPAGDIFSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKN 789 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 790 LYRKLDARSRESALAQAVQRGLL 812 >gi|71907962|ref|YP_285549.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71847583|gb|AAZ47079.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 211 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S + LT R+T L+L G T++EIA LG+S TV + ++ + Sbjct: 140 AEGTSGSGTQLTARQTEILRLVASGRTTKEIARDLGISPKTVEFHRSRLMERIGVHDVTG 199 Query: 224 AIAKAIRFGYIC 235 A++ G +C Sbjct: 200 LTRFALQTGVVC 211 >gi|284042762|ref|YP_003393102.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946983|gb|ADB49727.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 228 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 46/112 (41%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +R G + L+ A + E + + S +LT RE Sbjct: 106 LRSGARGYVLKEAADDELVQAVRLAREGRTYLNPELGARMAAEPPPSGPPDDLTARELEV 165 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G+T+ EIA++L LS+ TV ++ K+ +R + + A+ G Sbjct: 166 LRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVRYALDHGL 217 >gi|238064361|ref|ZP_04609070.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886172|gb|EEP75000.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 229 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + + + LTERE L L G ++ IAE+L +S T ++ Sbjct: 134 QALIARYLASLKPATGAVPTELAALTEREREVLTLVAAGLSNNAIAERLYVSPLTAKTHV 193 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL A +R Q + A + G+ Sbjct: 194 NRIMAKLGARDRAQLVVVAYQTGF 217 >gi|150391892|ref|YP_001321941.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951754|gb|ABR50282.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 208 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 V+T L+ K++ LTERE ++ G+G ++ EI+ L LS TV Y+ Sbjct: 129 ASVLTSMLKEEKEKHHLDLQLTEREHEIIKWVGEGLSNREISAALYLSEGTVRNYVTQLL 188 Query: 214 VKLDAVNRIQAIAK 227 KL+ +R Q Sbjct: 189 EKLNVRDRTQLAIF 202 >gi|296451265|ref|ZP_06893005.1| DNA-binding response regulator [Clostridium difficile NAP08] gi|296880383|ref|ZP_06904346.1| DNA-binding response regulator [Clostridium difficile NAP07] gi|296259871|gb|EFH06726.1| DNA-binding response regulator [Clostridium difficile NAP08] gi|296428624|gb|EFH14508.1| DNA-binding response regulator [Clostridium difficile NAP07] Length = 218 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 42/83 (50%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++T + ++ NLTE+E S ++L +G ++EI+++L LS T+ + + Sbjct: 134 VAEKIMTPEKMIEQEHLYDMYNLTEKEISIIRLIANGLNNKEISKELFLSEGTIKNNITN 193 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R Q A + + Sbjct: 194 ILGKLELRDRTQLAIFAFKNKIV 216 >gi|295108610|emb|CBL22563.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Ruminococcus obeum A2-162] Length = 206 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 35/75 (46%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I D + AA + ERE ++L DG +++EIA +L LS TV YL S KL Sbjct: 131 IPDLIRNEDGFDYAAHGINEREKEIIRLIADGNSNKEIAAELYLSEGTVRNYLSSILNKL 190 Query: 217 DAVNRIQAIAKAIRF 231 +R Q + Sbjct: 191 QLRDRTQVAVFYYQH 205 >gi|288904269|ref|YP_003429490.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306830297|ref|ZP_07463468.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288730994|emb|CBI12538.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304427544|gb|EFM30645.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 207 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TE++ LQ+ DG T++EIA +L ++ TV YL NR QAIA AIR I Sbjct: 148 TEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNLI 207 >gi|269977463|ref|ZP_06184435.1| putative Nitrate/nitrite response regulator-like protein [Mobiluncus mulieris 28-1] gi|307700357|ref|ZP_07637397.1| transcriptional regulator, LuxR family [Mobiluncus mulieris FB024-16] gi|269934379|gb|EEZ90941.1| putative Nitrate/nitrite response regulator-like protein [Mobiluncus mulieris 28-1] gi|307614568|gb|EFN93797.1| transcriptional regulator, LuxR family [Mobiluncus mulieris FB024-16] Length = 229 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 4/123 (3%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + + + G + + Sbjct: 110 RAGARGYVTKTISTPDLVDSIIRVAEGDAAFSP----RLAGFVLDAFGAARSEIVETDNE 165 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE ++L GY +EIA +L +SV TV +++ + KL NR + A Sbjct: 166 LDSLTSREFEVMRLIARGYAYKEIASELYISVKTVESHVSAVLRKLQLSNRYELSRWAAE 225 Query: 231 FGY 233 Sbjct: 226 RRI 228 >gi|255655281|ref|ZP_05400690.1| two-component response regulator [Clostridium difficile QCD-23m63] Length = 215 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 42/83 (50%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++T + ++ NLTE+E S ++L +G ++EI+++L LS T+ + + Sbjct: 131 VAEKIMTPEKMIEQEHLYDMYNLTEKEISIIRLIANGLNNKEISKELFLSEGTIKNNITN 190 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R Q A + + Sbjct: 191 ILGKLELRDRTQLAIFAFKNKIV 213 >gi|212636693|ref|YP_002313218.1| regulatory protein LuxR:response regulator receiver [Shewanella piezotolerans WP3] gi|212558177|gb|ACJ30631.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella piezotolerans WP3] Length = 209 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157 L + + V ++ +++++ +++I Sbjct: 69 LNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLDMLKNAMLGHRII 128 Query: 158 TD-----FLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +D EL + NLT RE LQ +G ++ +AE+L +S TV ++ Sbjct: 129 SDNVKEYLSELNSSVNEQEWIENLTPRELEILQHLAEGQSNRVVAEQLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|206970462|ref|ZP_03231415.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735039|gb|EDZ52208.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 200 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|167622780|ref|YP_001673074.1| LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352802|gb|ABZ75415.1| transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 317 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D + + + LT RE + G T ++IA KL LS TV+ +L KL Sbjct: 241 MGDLYRISLRVKNQLDELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKL 300 Query: 217 DAVNRIQAIAKA 228 R + ++ A Sbjct: 301 GINTRSELVSIA 312 >gi|163859318|ref|YP_001633616.1| nitrate/nitrite response regulator protein [Bordetella petrii DSM 12804] gi|163263046|emb|CAP45349.1| nitrate/nitrite response regulator protein [Bordetella petrii] Length = 220 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +Q G +++ IA +L ++ TV ++ + KL+ +R+Q A+ G Sbjct: 156 RLTTREREIVQCLAHGASNKVIARQLDIAESTVKIHVQNILKKLNLTSRVQVAVYAVENG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|52082354|ref|YP_081145.1| putative transcriptional regulator YdfI [Bacillus licheniformis ATCC 14580] gi|52787743|ref|YP_093572.1| YdfI [Bacillus licheniformis ATCC 14580] gi|319648225|ref|ZP_08002442.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2] gi|52005565|gb|AAU25507.1| putative transcriptional regulator YdfI [Bacillus licheniformis ATCC 14580] gi|52350245|gb|AAU42879.1| YdfI [Bacillus licheniformis ATCC 14580] gi|317389860|gb|EFV70670.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2] Length = 212 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTE+E L+ G S+ IA LG+S TV + L S KL A +R +A+ A++ G Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRG 207 Query: 233 YI 234 + Sbjct: 208 VL 209 >gi|300785055|ref|YP_003765346.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794569|gb|ADJ44944.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +E +++ L++RE L+L ++ +IA +L +S TV +L + KL Sbjct: 138 RATMESLERQQEQRTLLSDRELEVLRLVAAAMSNAQIASRLFISEGTVKRHLTNIYGKLG 197 Query: 218 AVNRIQAIAKAIRFGYI 234 AV+R+ AI KA + I Sbjct: 198 AVSRVDAIKKAAKARLI 214 >gi|297162250|gb|ADI11962.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 39/97 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L E ++ + + LTERE L+L G T+ EIA Sbjct: 118 RLAAEGESLLFPAAVRSFAAARGGNKRAREAMDRAALTEREAEVLRLMARGLTNAEIAGH 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + TV ++ + KL A +R QA+ A G++ Sbjct: 178 LVIGAETVKTHVSAVLAKLGARDRTQAVIAAYESGFV 214 >gi|288917708|ref|ZP_06412071.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350923|gb|EFC85137.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 243 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LT+RE L G ++ EIA +L L+ TV ++G KL+ +R+QA Sbjct: 163 RDGADRLARLTDRERDVLGEVAAGLSNAEIATRLVLAEGTVKTHVGRILGKLELRDRVQA 222 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 223 VVFAYEIGLV 232 >gi|288921284|ref|ZP_06415567.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288347315|gb|EFC81609.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 217 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH--------GACYQVITDFLELFKKRSSAA 171 F L +GYV+ + L + Sbjct: 93 FFAALRAGASGYVLKSVADRDLVEACRAAVRGEAFLYPGAVNALIRDHLERAAAGDPGTG 152 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R +T+RE L+L +G++S +IA+ L +SV TV + + KL +R++ AIR Sbjct: 153 RVITDREEEVLKLVAEGHSSRQIADILFISVKTVERHRSNLLQKLGLRDRLELTRYAIRA 212 Query: 232 GYI 234 G I Sbjct: 213 GLI 215 >gi|284041724|ref|YP_003392064.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945945|gb|ADB48689.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 148 EAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A A ++ I L L +A LTERE L+L G ++ EIA +L +S TV Sbjct: 127 AATRALFERIAPMLHLDAAPPPSALGELTERELDVLRLLARGLSNGEIAAQLFVSGATVK 186 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL +R+QA+ A G + Sbjct: 187 THVSHLLRKLCLRDRVQAVVFAYDSGLV 214 >gi|229158912|ref|ZP_04286969.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228624523|gb|EEK81293.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 189 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIARALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 YI 234 ++ Sbjct: 188 WV 189 >gi|229820223|ref|YP_002881749.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566136|gb|ACQ79987.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 224 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE + L G ++EEI ++L +S T ++ A +KL A +R Q + Sbjct: 156 DPHPHIDQLTNREHEVVSLVAQGLSNEEIGKRLYVSPATARTHVSHAMLKLSARDRAQLV 215 Query: 226 AKAIRFGY 233 A + G Sbjct: 216 VFAFQSGL 223 >gi|220913455|ref|YP_002488764.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860333|gb|ACL40675.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 17/139 (12%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITDFLE--- 162 +A V VI ++ I +A V + L Sbjct: 88 GTTRFLALSVSDAAEDVVAVIRAGARGYVTKTISGAEITDAVFRVAGGDAVFSPRLAGFV 147 Query: 163 LFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L ++ A L+ RE ++L GY+ +E+A++L +S+ TV ++ + K Sbjct: 148 LDAFGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSAVLRK 207 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R + A + Sbjct: 208 LQLSSRHELTKWAAERRLL 226 >gi|29829281|ref|NP_823915.1| LuxR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29606388|dbj|BAC70450.1| putative LuxR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 1157 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 9/165 (5%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P W R+ L + +A + Sbjct: 982 LLRAEGAGTPRDWSETVTAFEPLERPYDLARVRHR-LAESLLASGADDDARARATELLRL 1040 Query: 137 EFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDG 188 + + E+ Q L ++S A LT RE L+L G Sbjct: 1041 AGAVADHLGARPLAESVALLAQRARLTLSGTTRQSPPADPAEALGLTSRERDVLRLVAAG 1100 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ +IAEKL +S T + ++ + KL R +A A A R Sbjct: 1101 RSNRQIAEKLFISPKTASVHVSNILAKLGVAGRGEAAALAHRMRL 1145 >gi|258513942|ref|YP_003190164.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257777647|gb|ACV61541.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 824 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 IIE AC I + LTERE L LA +G EIA +L +S TV Sbjct: 740 IIELLEACEHYIESLSRAPESTV----TLTERELEVLTLAAEGLRRNEIAARLYVSGTTV 795 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L + KL+ R A+ KA + I Sbjct: 796 KTHLANIYRKLEVGGRTAAVKKAGKLKII 824 >gi|116620723|ref|YP_822879.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223885|gb|ABJ82594.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 216 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ D++ ++R + LT RE LQL +G ++E+A L LS++TV + Sbjct: 130 AISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAEGKNNKEVAAILNLSLYTVETH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 G+ KL+ + + I AIR G I Sbjct: 190 RGNILQKLNLHSGAELILYAIRKGVI 215 >gi|94314084|ref|YP_587293.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357936|gb|ABF12024.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 231 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 22/179 (12%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128 P+ + S L L + L Sbjct: 52 ARARVTDQPVALALVDLGLPDGSGIDLIAELRAADPGLGILVISAWSTQDAILAALRAGA 111 Query: 129 NGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLEL------FKKRSSAARNLT 175 GYV+ + L +A + ++I + + + L+ Sbjct: 112 TGYVVKERDDLEVALALRSVLRGGAPIDPFIARRIIEELHPGPSESANAQTPEPSTERLS 171 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L DG + EIAE+L LS +TV ++ KL +R +AI A G + Sbjct: 172 PREHQILRLVADGLGNREIAERLFLSRYTVECHIKHIYRKLAVSSRTRAINAARSRGLL 230 >gi|332709752|ref|ZP_08429711.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332351579|gb|EGJ31160.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 89 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 38/73 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +S L+ RE ++ G T+ EIA++L +S TV+ ++ + K NR+ Sbjct: 1 MASGKSQNHATLSYRELQIIEHVAAGLTNLEIAQELAISKRTVDNHISNILTKTSTDNRV 60 Query: 223 QAIAKAIRFGYIC 235 + A+++G +C Sbjct: 61 GLVRWALKWGKVC 73 >gi|300790995|ref|YP_003771286.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800509|gb|ADJ50884.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 261 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 39/99 (39%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 ++ A + D A L+ RE LQL +G + IA Sbjct: 141 RRYIDPALAALTARPKRTAAPKGDLAHDSPPAPRGAMPLSRREYQVLQLVAEGLENSAIA 200 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L LSV TV ++ S KL A +R A+ A R G + Sbjct: 201 KLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRSGIL 239 >gi|223935686|ref|ZP_03627602.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895694|gb|EEF62139.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + ++ F + + +L++RE L GY +EIA++L +S+ TV +L Sbjct: 126 MSSHIARKVVQYFHQVPAPNEIASLSKREEEVLHHLAQGYLYKEIADRLSISIDTVRKHL 185 Query: 210 GSATVKLDAVNRIQAIAK 227 S KL +R A+ K Sbjct: 186 NSIYNKLHVHSRTDAVVK 203 >gi|330975620|gb|EGH75686.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 704 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELF 164 LL + P G + E +E ++ ++ Sbjct: 574 DEARALLLR---SLPAASGGALIPFKALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACC 630 Query: 165 KKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A L+ RE LQL G +++EI+E+L +S+HTV + KL R Sbjct: 631 TPSPEPAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKNHASHINNKLGVERR 690 Query: 222 IQAIAKAIRFGYI 234 QA+A+A G + Sbjct: 691 TQAVARAKTLGLL 703 >gi|290958642|ref|YP_003489824.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648168|emb|CBG71276.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 6/113 (5%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSC 181 ++A + A ++IT+F +L + +A LT+RET Sbjct: 106 DASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLVQAPRPSAATQLAYGELTDRETEV 165 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIAE+L ++ T+ ++ VKL +R QA A + Sbjct: 166 LVLIAQGLSNSEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 218 >gi|195978994|ref|YP_002124238.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975699|gb|ACG63225.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 199 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE E L+L D Y++E+I++KL +S TV+ ++ + KL+ +R+ A+ +AI+ Sbjct: 139 LTESEIEILRLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIKLKL 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|126729883|ref|ZP_01745696.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] gi|126710002|gb|EBA09055.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] Length = 212 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G +++E+A L +SV TV + + KL A+ Sbjct: 143 DPLTNREQTILLQLAQGKSNKEVAVALDISVRTVETHRKNIKRKLGIATTAGLTRYALEH 202 Query: 232 GYI 234 G + Sbjct: 203 GVL 205 >gi|51893773|ref|YP_076464.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857462|dbj|BAD41620.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 224 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A L+ RE L+ G T+ EIAE+LGLS +TV Y+ S KL+ NR+QA A A Sbjct: 152 AAESLLSPREAQILRRIAAGNTNREIAEQLGLSENTVKNYVKSILAKLNLENRVQAAAWA 211 Query: 229 I 229 + Sbjct: 212 L 212 >gi|302540851|ref|ZP_07293193.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458469|gb|EFL21562.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 228 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G ++ E+A +L L+ TV ++ KL +R+QA+ A G Sbjct: 152 SLTPRELEVLGLLARGLSNAELATRLYLAEATVKTHVARILAKLGLRDRVQAVIAAYETG 211 Query: 233 YI 234 + Sbjct: 212 LV 213 >gi|182435087|ref|YP_001822806.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463603|dbj|BAG18123.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 213 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 49/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G + L + + A LT RE LQL Sbjct: 103 AGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQLV 162 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++ I+++L LS TV ++L KL +R A+A A I Sbjct: 163 GEGLSNLRISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211 >gi|118472166|ref|YP_889490.1| DevR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173453|gb|ABK74349.1| two component transcriptional regulatory protein devr [Mycobacterium smegmatis str. MC2 155] Length = 211 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 36/83 (43%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + L +RS LT++E L L G+G T+++IA ++ L+ TV Y Sbjct: 125 LDNRAATALMSKLRGDAERSDPLSGLTQQERVLLDLLGEGLTNKQIAARMFLAEKTVKNY 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + KL R QA A + Sbjct: 185 VSRLLAKLGMERRTQAAVFASKL 207 >gi|89094688|ref|ZP_01167624.1| probable two-component response regulator [Oceanospirillum sp. MED92] gi|89081034|gb|EAR60270.1| probable two-component response regulator [Oceanospirillum sp. MED92] Length = 213 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L + G +++EIA +L ++ TV A+L S K +R+ + A Sbjct: 152 EGLSSREHDVLSVLVTGASNKEIARELDITERTVKAHLSSIFQKTGVTDRVSLVLMA 208 >gi|328881569|emb|CCA54808.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 218 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 40/97 (41%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L+ ++ ++ LTERE L+L G T+ EIA + Sbjct: 119 RLVARSDSLLYPAAVRGLAAEHARNRPPVAPPWVARLTEREAEVLRLVATGLTNAEIAGR 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G+ TV ++ S K A +R QA+ A G++ Sbjct: 179 MGVGPATVKTHVASVLAKSGARDRTQAVILAYESGFV 215 >gi|325926289|ref|ZP_08187643.1| ATP-dependent transcriptional regulator [Xanthomonas perforans 91-118] gi|325543323|gb|EGD14752.1| ATP-dependent transcriptional regulator [Xanthomonas perforans 91-118] Length = 923 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA L LS +TV +L + Sbjct: 827 RALTIQALLERLSGDDDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 887 LYRKLDARSRESALAQALQRGLL 909 >gi|325977247|ref|YP_004286963.1| nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177175|emb|CBZ47219.1| Nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 203 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TE++ LQ+ DG T++EIA +L ++ TV YL NR QAIA AIR I Sbjct: 144 TEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNLI 203 >gi|307296354|ref|ZP_07576181.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878156|gb|EFN09379.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 250 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +R A L++RE L+ G ++ I++++ +S TV ++ + KL NR Sbjct: 146 ALEVERPVDAACLSDRELEILRWLIMGCPNKVISKRMNISEATVKVHVKAVLRKLRVKNR 205 Query: 222 IQAIAKAIRFGY 233 QA A G Sbjct: 206 TQAAIWAANHGM 217 >gi|302334932|ref|YP_003800139.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084] gi|301318772|gb|ADK67259.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084] Length = 245 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + R LT+RE ++L G +++ +AE+L +S HTV ++ S KL+ NR Q Sbjct: 181 MAELRRLTKREREVMRLVCVGMSNQRVAEELFISEHTVKLHVSSILKKLNLANRTQLAIY 240 Query: 228 AIR 230 + Sbjct: 241 GAK 243 >gi|282801760|gb|ADB02863.1| AzicR5 [Kibdelosporangium sp. MJ126-NF4] Length = 214 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 32/79 (40%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ + + A LT RE L DG T+ EI +L +S T ++ + Sbjct: 134 RLLRHLTGRDDEPDALAEPLTAREREVAGLVADGLTNAEIGTRLFISAGTAKTHVANVQR 193 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL NR+ A G Sbjct: 194 KLGVRNRVGIAIWAQARGL 212 >gi|312195087|ref|YP_004015148.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226423|gb|ADP79278.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 257 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 G V+ D ++ + +LT RE L+L G ++++ A +LG+S TV ++ Sbjct: 161 GLAALVLGDLSRAARRPAEPGTPSLTAREIEVLRLVAKGLSAKDAAARLGVSPRTVQNHV 220 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 + KL NR++ A+R GY Sbjct: 221 HNVLSKLRLRNRVELTRFAVRAGY 244 >gi|254496211|ref|ZP_05109106.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] gi|254354603|gb|EET13243.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] Length = 505 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 Q + + + K LT RE CL + G T ++I+E L LS TVN Sbjct: 418 WLALFNDQEFRNNVIMRKAVKKPLTQLTPRELQCLSMISKGMTIKKISEYLHLSSETVNT 477 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + S K++ VN +A++KA R G + Sbjct: 478 HAKSIRTKMNCVNITEAVSKAFRLGLL 504 >gi|207722498|ref|YP_002252934.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2] gi|206587679|emb|CAQ18261.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2] Length = 252 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 13/209 (6%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 ++ + R+ A +Y + + + Sbjct: 28 ESVRPILNHRHLA--CGYGRTTSSGVAMDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWL 85 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 S P+ + + E + + + A V + G + Sbjct: 86 STRRPVYF---DAASPWEGTDPVWLEKFVKHDLRNCAADAVFDEANCVGTYFSFHALPTV 142 Query: 142 A--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 ++ HGA + + ++ S A LTERE L G G ++ E Sbjct: 143 EEGCLDATLRDLTPALHGALLRAVASVERDLQQASQALATLTEREREVALLIGQGRSNAE 202 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 IA+ + S TV YL S K NR+ Sbjct: 203 IAQVVCRSESTVKHYLSSIMDKTGCENRV 231 >gi|145596336|ref|YP_001160633.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305673|gb|ABP56255.1| response regulator receiver [Salinispora tropica CNB-440] Length = 228 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 18/161 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + + +A V +I ++ + + Sbjct: 68 LDVHMPEGGGRAVLEAIRRTYPHVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELA 127 Query: 148 EAHGA--------CYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193 A ++ L+ F R LT RE L+L GY +E Sbjct: 128 AAVRRVAEGDAVFSPRLAGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKE 187 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA++L +S+ TV ++ + KL +R + A + Sbjct: 188 IAKELYISIKTVETHVSNVLRKLQMSSRYELSRWAADRRLV 228 >gi|330995249|ref|ZP_08319160.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila YIT 11841] gi|329575966|gb|EGG57486.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila YIT 11841] Length = 209 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 9/99 (9%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAA---------RNLTERETSCLQLAGDGYTSEEIA 195 ++ L + L++RE L L G T++EIA Sbjct: 106 MVRALLQLQQYAHAHGRHLPQGMRKPISGTTASTDPNGLSQREIEVLILIVRGLTNKEIA 165 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L + TV ++ + KL+ + A+ GYI Sbjct: 166 DHLCIGTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGYI 204 >gi|294627134|ref|ZP_06705722.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598567|gb|EFF42716.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 926 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA L LS +TV +L + Sbjct: 830 RALTIQALLERLNGDDDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 889 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 890 LYRKLDARSREGALAQALQRGLL 912 >gi|301029752|ref|ZP_07192806.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|299877440|gb|EFI85651.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|332342581|gb|AEE55915.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 190 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 130 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184 >gi|218889798|ref|YP_002438662.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218770021|emb|CAW25783.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 906 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 9/146 (6%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 ++ E E +++ G P+ ++ + A Sbjct: 768 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 819 Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ E + A L+ RE + L+L G +++EI+E+L +S+HTV ++ Sbjct: 820 CPGAQRMRALLPEPPAEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 879 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL R QA+A+A G + Sbjct: 880 ARHINDKLGVERRTQAVARAKHMGLL 905 >gi|167034704|ref|YP_001669935.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166861192|gb|ABY99599.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 82 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 169 SAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A LT RE L G +S EI L TVN ++ + K D R+ A+ Sbjct: 11 PPADAPVRLTPRERQVLLWCAYGKSSWEIGRILDCKESTVNFHVSNILRKFDVPTRVVAV 70 Query: 226 AKAIRFGYI 234 KAIR+G + Sbjct: 71 IKAIRYGLL 79 >gi|152965318|ref|YP_001361102.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359835|gb|ABS02838.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 249 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 40/102 (39%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + ++ A+ + +LT RE L+ G ++ Sbjct: 138 VHSGDAVIAASSTRRLLQHVGPMLRAGAASPAAAAQGVPADLTPRELEVLECMAHGLSNG 197 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA + +S TV ++G K + +R+QA+ A G + Sbjct: 198 EIAARFVVSEATVKTHVGRVLAKTRSRDRVQAVVLAYAAGLV 239 >gi|261212443|ref|ZP_05926728.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341] gi|260838374|gb|EEX65030.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341] Length = 208 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 11/167 (6%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + + I E+ L RL F I + G Sbjct: 40 FHALTHHE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEF---LMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGD 187 + S+ L + + A G Y + L ++ +LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRSYLCADALVNLSNPDINNVLADLTKREVEVFDLLVQ 158 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 159 GKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205 >gi|260204041|ref|ZP_05771532.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis K85] gi|289573466|ref|ZP_06453693.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis K85] gi|289537897|gb|EFD42475.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis K85] Length = 216 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + LP + G+++ S Sbjct: 56 DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR 115 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ + A L+ RE L G + I Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL +R A+A+A+R + Sbjct: 176 AAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215 >gi|239939692|ref|ZP_04691629.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986176|ref|ZP_04706840.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443118|ref|ZP_06582508.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346065|gb|EFE72969.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 216 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ ++ + + V + A G A Q+ +++ + + LT+ Sbjct: 96 LRAGADGFLLKRAKPSEIVHAVRLVAEGESLLFPVAVRQLASEYGTGRAREALDRAALTD 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L+L G ++ EIA L + + TV +++ S KL A +R QA+ A G++ Sbjct: 156 REAAVLRLMARGMSNAEIAADLVVGIQTVKSHVSSVLAKLGARDRTQAVIAAYESGFV 213 >gi|119471494|ref|ZP_01613935.1| putative transcriptional regulator, LuxR family protein [Alteromonadales bacterium TW-7] gi|119445593|gb|EAW26878.1| putative transcriptional regulator, LuxR family protein [Alteromonadales bacterium TW-7] Length = 218 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 142 ANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +++ A Q D L L + LT+RE + + L +G ++EIAE+L + Sbjct: 123 RRDIMCNALNRMLQFNKDALHKLTEGDIEPV-KLTKREKAIISLMSNGSKNKEIAEELSI 181 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 S HTV +L SA K NRI+ ++ A + Sbjct: 182 SPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|107103438|ref|ZP_01367356.1| hypothetical protein PaerPA_01004508 [Pseudomonas aeruginosa PACS2] Length = 906 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 9/146 (6%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 ++ E E +++ G P+ ++ + A Sbjct: 768 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 819 Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ E + A L+ RE + L+L G +++EI+E+L +S+HTV ++ Sbjct: 820 CPGAQRMRALLPEPPSEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 879 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL R QA+A+A G + Sbjct: 880 ARHINDKLGVERRTQAVARAKHMGLL 905 >gi|88855696|ref|ZP_01130359.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88815020|gb|EAR24879.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 225 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 30/77 (38%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + LT RE L G ++ EIA +L ++V TV +L Sbjct: 135 RLLEAFAGQPSPVGEPIAQPTEPLTAREEEVLATVARGLSNSEIASELHITVSTVKTHLA 194 Query: 211 SATVKLDAVNRIQAIAK 227 S KL NR++ Sbjct: 195 SLMTKLGVRNRVEIAIW 211 >gi|99078159|ref|YP_611417.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99035297|gb|ABF62155.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 267 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 8/233 (3%) Query: 10 KSSSLQELSPRLHLIQN-RIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ +L++ +++ I + + +I Sbjct: 13 EAPTLEQKYRVFADFMEGEFGYVGVNYGIFLDARSAQAISNHFIAKRMGMSSEWREIYQK 72 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF--AGIAFPVRLG 125 D + PI+ + + + + G+ F G+ PV Sbjct: 73 QGYGRRDLAMMMGAVTKRPILQTQFYQMQRQDDIPKPYAEVIEGVHDFVKCGVVLPVYAN 132 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCL 182 K ++ + ++ +G + + L + + A L+E L Sbjct: 133 GRKGVVGLYDPKGDAAKHDEKYRKYGTLIEALARHLHVSSSWAEETIAQTRLSEMNLRVL 192 Query: 183 QLAGDGYTSEEIAEKLGL-SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G +EI ++ + TV+ ++ L A N ++A+AKA G + Sbjct: 193 RLKARGLRVKEILHQIERDNPKTVDNHMARVRRSLGARNDVEAVAKAATLGLL 245 >gi|320530995|ref|ZP_08032027.1| putative response regulator UvrY [Selenomonas artemidis F0399] gi|320136744|gb|EFW28694.1| putative response regulator UvrY [Selenomonas artemidis F0399] Length = 217 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAAR-----NLTERE 178 GY+ TS L + + A L R A LTERE Sbjct: 97 GAMGYLPKTSADDELFDALHALAEGRRYLSPNAQQSLLAAMFSRPGDAEEDPRARLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GYT E AE+L LS TV+ + KL R +A AIR G + Sbjct: 157 KEVFDRLIRGYTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHGLL 212 >gi|318605170|emb|CBY26668.1| putative two-component response regulator precursor [Yersinia enterocolitica subsp. palearctica Y11] Length = 198 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 128 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 187 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 188 LADYAHTHNLV 198 >gi|192360065|ref|YP_001981449.1| two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190686230|gb|ACE83908.1| two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 312 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 9/125 (7%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 +R P +G P+ L G + L+ E ++ H E Sbjct: 192 LREWLSHKPESGRQLPLNLNSQGLGIEML---NLVDKREYLLRLHQRAQP------EDET 242 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +T RE L+ +G T+ EI + L +S TVN +L KL NR A Sbjct: 243 QSLRQQFAVTGREADVLRWIANGKTNREIGQILDMSPRTVNKHLEQIFKKLGVENRTSAA 302 Query: 226 AKAIR 230 A AI+ Sbjct: 303 AAAIK 307 >gi|149189578|ref|ZP_01867861.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Vibrio shilonii AK1] gi|148836557|gb|EDL53511.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Vibrio shilonii AK1] Length = 226 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE L+ G +++ IA KL +S TV ++ S KL +R++A Sbjct: 162 DVLSTREQEILKNIAIGLSNKMIANKLFISESTVKVHVKSILKKLQLRSRVEAAVW 217 >gi|21223170|ref|NP_628949.1| two-component system DNA-binding response regulator [Streptomyces coelicolor A3(2)] gi|8218193|emb|CAB92655.1| putative two-component system DNA-binding response regulator [Streptomyces coelicolor A3(2)] Length = 251 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 133 IRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 192 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 193 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 251 >gi|162418425|ref|YP_001606567.1| LuxR family DNA-binding response regulator [Yersinia pestis Angola] gi|162351240|gb|ABX85188.1| DNA-binding response regulator, LuxR family [Yersinia pestis Angola] Length = 210 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|329954461|ref|ZP_08295552.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328527429|gb|EGF54426.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 217 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 V + R LT RE L+ +G ++EIA++L +S +TV+ + Sbjct: 134 AEHVRAQMKRSDEGRR---EELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHL 190 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KLDA N I AI G I Sbjct: 191 MDKLDARNVADLIMTAISKGII 212 >gi|312961526|ref|ZP_07776027.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284205|gb|EFQ62785.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 215 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L + AA LTERE L+ GY+++ I KLG++ TV ++ + KL Sbjct: 139 AQALRSPQPHAAVELTERERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLR 198 Query: 220 NRIQAIAKAIRF 231 +R++A A+ Sbjct: 199 SRVEAAVWAMEH 210 >gi|257054297|ref|YP_003132129.1| two component transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] gi|256584169|gb|ACU95302.1| two component transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] Length = 208 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT+RE L+ DG T+ +IA +L L+ TV YL +A KL A NR +A A Sbjct: 145 SDQLTDRERELLRQVADGATNRDIARRLHLAEGTVRNYLSAAMAKLGARNRTEAAKAARE 204 Query: 231 FGYI 234 G+I Sbjct: 205 RGWI 208 >gi|227875828|ref|ZP_03993954.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|306819109|ref|ZP_07452823.1| two component system response regulator [Mobiluncus mulieris ATCC 35239] gi|227843576|gb|EEJ53759.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|304648085|gb|EFM45396.1| two component system response regulator [Mobiluncus mulieris ATCC 35239] Length = 229 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 4/123 (3%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + + + G + + Sbjct: 110 RAGARGYVTKTISTPDLVDSIIRVAEGDAAFSP----RLAGFVLDAFGATRSEIVETDNE 165 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE ++L GY +EIA +L +SV TV +++ + KL NR + A Sbjct: 166 LDSLTSREFEVMRLIARGYAYKEIASELYISVKTVESHVSAVLRKLQLSNRYELSRWAAE 225 Query: 231 FGY 233 Sbjct: 226 RRI 228 >gi|196229776|ref|ZP_03128640.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226102|gb|EDY20608.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 212 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + L+ RE L+ +G +EIA++L LS+ TV Y+ Sbjct: 136 HFFRQNEPAAEANGAVIEKLSARENEILRCLAEGRHYKEIADQLNLSMDTVRTYIRRTYE 195 Query: 215 KLDAVNRIQAIAK 227 KL +R +A+ K Sbjct: 196 KLHVHSRTEAVVK 208 >gi|167590170|ref|ZP_02382558.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 243 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 12/230 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S E RL + + + +F + LD R L + + I Sbjct: 19 NSDSETLSRLKKVFSILGIPSFLF--VTFQLDNEARASDYRFLVGCNPEWIQIYQHRHWY 76 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D +L + + P I + + + + + + P Sbjct: 77 SNDPYLQYGRTHTSPAPGSKIP---IASAGQREMIETARRYGLRSTLTLPAHARSTALIG 133 Query: 132 VIFTSEFLMLANE-VIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQL 184 V+ S + + + ++ ++A L ERE S L+L Sbjct: 134 VLLASTDVDAEAGGEELLMRWRSLLRAAALELLDGRISINRRAAAAKYALDEREVSALRL 193 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++E+A +GLSV TV A K +A +A R G + Sbjct: 194 VLAAEPAQEVARTIGLSVATVYAMYSRINEKFGVPRINEAARRAERLGLL 243 >gi|220920519|ref|YP_002495820.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945125|gb|ACL55517.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 123 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT RE L L +G +++ IA +LG+SVHT ++GS KLDA R Sbjct: 49 SAATPDAGPDVGLTPREIEVLSLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGR 108 Query: 222 IQAIAKAIRFGYI 234 A+A A R G I Sbjct: 109 TDAVAHAARRGVI 121 >gi|314934456|ref|ZP_07841815.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae C87] gi|313652386|gb|EFS16149.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae C87] Length = 220 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 152 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEY 211 Query: 228 AIRFGYI 234 A++ + Sbjct: 212 ALKKKLL 218 >gi|312962962|ref|ZP_07777448.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311282731|gb|EFQ61326.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 833 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + I E ++++ + ++ L++RE LQL G ++ +IA++L + Sbjct: 739 QQAIRELRLRAPGLLSELGMEPQASTAGVVENPLSQRELEVLQLIALGSSNLQIADRLFI 798 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 S+HTV + KL R QA+AKA G Sbjct: 799 SLHTVKTHARRIHSKLGVERRTQAVAKAKTLGL 831 >gi|303246240|ref|ZP_07332520.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302492303|gb|EFL52175.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 218 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ + ++A NLT RE +++ +G T++E+AE L +SV T + Sbjct: 133 QEVSRELLVGSPKAQAAPANAYDNLTAREREVMRMVVEGLTTKEVAEALAISVKTAEHHR 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL N ++ + A R G I Sbjct: 193 CNLMRKLGLQNSVELVRYASRLGLI 217 >gi|291442824|ref|ZP_06582214.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291345771|gb|EFE72675.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ ++AA LTERE + L G G ++EEIA +L +S T + Sbjct: 132 GVTRRLIAEFAARSKEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 191 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 192 VSRTMVKLGARDRAQLVVLAYESGLV 217 >gi|289641790|ref|ZP_06473948.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508434|gb|EFD29375.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 377 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 9/145 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 I+W + I L RL V ++ + LA+ Sbjct: 235 ILWAFAEGFGQIFERAVLLGRLRDQREQVRSAMQTV-----ESVLDDLAGAEIDLASRE- 288 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 H L RSS +LT RE L L G T+ IAEKL ++ TV Sbjct: 289 ---HATALAATRPARLLHTTRSSKMESLTGRELEVLTLMATGATNNRIAEKLVITNGTVK 345 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231 +++ KL A NR +AI++ +R Sbjct: 346 SHVKRILRKLGAENRAEAISQYLRL 370 >gi|288916739|ref|ZP_06411113.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351813|gb|EFC86016.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 225 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 T+ + + LT+RE + G ++ EIA++L + TV +++ S KL Sbjct: 139 FTERRPVSSTVARRVERLTDRERDVVVAVARGSSNSEIAKELFIGPATVKSHVSSILTKL 198 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R Q + A G + Sbjct: 199 GLRDRAQVVVFAYESGLV 216 >gi|223042639|ref|ZP_03612688.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Staphylococcus capitis SK14] gi|222444302|gb|EEE50398.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Staphylococcus capitis SK14] Length = 218 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEY 209 Query: 228 AIRFGYI 234 A++ + Sbjct: 210 ALKKKLL 216 >gi|167567132|ref|ZP_02360048.1| probable two-component response regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 216 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L+L +G + +IAEKL +++ TV + + KLDA N + A R Sbjct: 153 AVALTPRERQVLKLISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAELANWAHR 212 Query: 231 FGY 233 G Sbjct: 213 LGL 215 >gi|239933385|ref|ZP_04690338.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441749|ref|ZP_06581139.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344644|gb|EFE71600.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + + LT+RE + L +G ++ +IA ++ LS TV ++ + KL+ +R+QA Sbjct: 143 EDAARSLDPLTDRERAVLGFIAEGLSNTDIAARMHLSTGTVKDHVSAILTKLEVGSRVQA 202 Query: 225 IAKAIRFGYI 234 A R G + Sbjct: 203 ALLAERAGLL 212 >gi|227823159|ref|YP_002827131.1| putative two component transcriptional regulator [Sinorhizobium fredii NGR234] gi|227342160|gb|ACP26378.1| putative two component transcriptional regulator [Sinorhizobium fredii NGR234] Length = 213 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K + + LT RET L + +G+++ +IA + G+S +TV +L + KL+ NR Sbjct: 138 ALSKISNPPFQQLTARETELLGMLANGWSNTQIASRTGISENTVKYHLKNLYDKLEVRNR 197 Query: 222 IQAIA-KAIRF 231 A+A A Sbjct: 198 AMAVAIYAKER 208 >gi|220906824|ref|YP_002482135.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863435|gb|ACL43774.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 28/63 (44%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L L G ++ EIAE L +S TV ++ +L +R QA Sbjct: 151 PPELAGLTPREREVLSLIVAGASNREIAEALYISERTVKNHISRILSQLHLRDRTQAAMF 210 Query: 228 AIR 230 A R Sbjct: 211 ASR 213 >gi|188026100|ref|ZP_02960869.2| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827] gi|188021614|gb|EDU59654.1| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827] Length = 225 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ SE ML N + A H + + +L K + +LT RE L Sbjct: 116 DAGAQGYLLKNSELDMLMNSMRKAAAGHHVFSEKVYQYLVNRHKINDPLSSLTRRECEIL 175 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G + EI++ L +S TV ++ + KL+ +R++A Sbjct: 176 HEMAAGLKNREISQLLFISEETVKVHIRNLLKKLNVRSRLEA 217 >gi|124022269|ref|YP_001016576.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962555|gb|ABM77311.1| possible DNA-binding response regulator [Prochlorococcus marinus str. MIT 9303] Length = 241 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 5/118 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNLTE 176 + +LA IE V+ K SS NL+ Sbjct: 114 IEAHCDGLCAHELVGSGTLLAALSAIESDGTYLDSVVAGVLRHGRLGNGKTSSQIDNLSL 173 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G +++ IA++L LS+ TV +++ + KL A +R A+ A R G + Sbjct: 174 REGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAVVVAFRDGLV 231 >gi|326330233|ref|ZP_08196544.1| response regulator, two-component system [Nocardioidaceae bacterium Broad-1] gi|325952046|gb|EGD44075.1| response regulator, two-component system [Nocardioidaceae bacterium Broad-1] Length = 218 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Query: 151 GACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 V L F ++ LTERE L L G T+ EI+ +L +S+ TV Sbjct: 127 LIAPNVTRRLLATFADQAPAVPVQPVDPLTEREEQVLALVARGRTNAEISTELFVSLSTV 186 Query: 206 NAYLGSATVKLDAVNRIQAIAKAI 229 ++ S KL NR++ A Sbjct: 187 KTHVASLMTKLGTRNRVEIAMWAY 210 >gi|288918024|ref|ZP_06412382.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350542|gb|EFC84761.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 282 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 148 EAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 V +LF + R L+ RE L+L +G ++ E A +L +S Sbjct: 191 ALRERIIAVRDLLEDLFPDTAPPTRAQPFGLSPRELDVLRLVAEGMSNAETARRLAVSPE 250 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV AYL S KL NR A+ A R + Sbjct: 251 TVKAYLRSIMNKLGVHNRTAAVNVARRSSLL 281 >gi|229822282|ref|YP_002883808.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568195|gb|ACQ82046.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 216 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 41/84 (48%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V + L + + LT RE L+L GY++ EIAE L L+ TV ++ Sbjct: 132 RVLRAVRAGSVPLDDAAAGDVQELTSRELEILRLLAAGYSNREIAEALHLAEGTVKNHVS 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + +KL +R +A+ +A+ G + Sbjct: 192 TVLLKLGTRDRTRAVLRALHHGLL 215 >gi|167623909|ref|YP_001674203.1| two component LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167353931|gb|ABZ76544.1| two component transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 222 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ LQL +GY++ EIAE++ +S+ TV + +L+ + + AIR Sbjct: 154 LTSRQRQILQLIAEGYSTREIAERMSVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRCKL 213 Query: 234 IC 235 IC Sbjct: 214 IC 215 >gi|158315976|ref|YP_001508484.1| LuxR family GAF modulated transcriptional regulator [Frankia sp. EAN1pec] gi|158111381|gb|ABW13578.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 285 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 148 EAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 V +LF + R L+ RE L+L +G ++ E A +L +S Sbjct: 194 ALRERIVAVRDLLEDLFPDTAPPTRAQPFGLSPRELDVLRLVAEGMSNAETARRLAVSPE 253 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV AYL S KL NR A+ A R + Sbjct: 254 TVKAYLRSIMNKLGVHNRTAAVNVARRSSLL 284 >gi|325923039|ref|ZP_08184737.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546480|gb|EGD17636.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 235 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + A + H V + N+ + Sbjct: 86 AAGDSHEASWLMPPRPADMREAKVPIHALGTTHGMLCVAWNDSRPAPGNDDVQALQAFAL 145 Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E ++R L++RE L L G T+ +A +LG+S TV Sbjct: 146 LLPAMVAEPAKPLATRRRKPVQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL+ +R QA A+ G Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVHAGL 233 >gi|254489762|ref|ZP_05102957.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010] gi|224464847|gb|EEF81101.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010] Length = 212 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 E K + A LT+RE L +G ++ IA KLG+S TV ++ + KL+ Sbjct: 139 ALSEPDTKVNQADAGLTDRENEILDCLAEGMNNKNIARKLGISDTTVKVHIKNILRKLNL 198 Query: 219 VNRIQAIAK 227 +R++A Sbjct: 199 TSRLEAAVW 207 >gi|114321300|ref|YP_742983.1| two component LuxR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114227694|gb|ABI57493.1| two component transcriptional regulator, LuxR family [Alkalilimnicola ehrlichii MLHE-1] Length = 264 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+R+ +L G+++ +IA L +S +TV Y+ NR Q A R G Sbjct: 198 RLTKRQREVTELIAKGHSNYQIANHLQISENTVKLYVSQVLALTGVSNRTQLALLANRHG 257 Query: 233 YI 234 + Sbjct: 258 LL 259 >gi|332521837|ref|ZP_08398286.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] gi|332042509|gb|EGI78711.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] Length = 453 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + L E I E ++ + KK + L+ RET LQL G T++EIA Sbjct: 359 RADIDLHIEEIKELTATVHK-----QKSNKKEIETTQLLSFRETEILQLISLGKTNKEIA 413 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +L +S +TV ++ + KL+ +R + Sbjct: 414 LELHISENTVKYHVKNIYTKLNIKSRKE 441 >gi|325977332|ref|YP_004287048.1| response regulator gacA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177260|emb|CBZ47304.1| Response regulator gacA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 227 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ E +Q G G +++EIA KL LS TV YL + KL+ +R Q A++ G Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215 >gi|320547831|ref|ZP_08042115.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320447591|gb|EFW88350.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 227 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ E +Q G G +++EIA KL LS TV YL + KL+ +R Q A++ G Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215 >gi|306830368|ref|ZP_07463538.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427393|gb|EFM30495.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 227 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ E +Q G G +++EIA KL LS TV YL + KL+ +R Q A++ G Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215 >gi|288904336|ref|YP_003429557.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|288731061|emb|CBI12607.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] Length = 227 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ E +Q G G +++EIA KL LS TV YL + KL+ +R Q A++ G Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215 >gi|269958046|ref|YP_003327835.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306727|gb|ACZ32277.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 970 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 22/231 (9%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 G + SL +L + + + + R + +L + Sbjct: 756 GSSADSLSAARAKLLEVGDAL--------AEVAHTTAVRGRPRGGKLGPEGRAWLLRVDA 807 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + + P + G A + Sbjct: 808 ELARLR------AAASGAPADPARWEATVREFGFGYRYEEARSRF----RWAQALHAADD 857 Query: 128 KNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L A + A + L +R + +LT+RE L Sbjct: 858 VEAATREAVTALAEADVMGAAPLAGAVREWARRARVALPGTPRRHESVASLTDREEEVLT 917 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G ++ +I E+L +S TV+ ++ + KL R +A+ A R G + Sbjct: 918 LVAEGLSNRQIGERLYISTKTVSVHVSNVLAKLGVSGRTEAVDVAHRKGLL 968 >gi|260597411|ref|YP_003209982.1| DNA-binding transcriptional regulator CsgD [Cronobacter turicensis z3032] gi|260216588|emb|CBA29849.1| Probable csgAB operon transcriptional regulatory protein [Cronobacter turicensis z3032] Length = 215 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 28/55 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + KL NR QA+ A Sbjct: 155 LTHREKEILNKLRFGASNMEIARSLFISENTVKTHLYNLFKKLAVKNRTQAVTWA 209 >gi|251797552|ref|YP_003012283.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] gi|247545178|gb|ACT02197.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] Length = 863 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + + LTE+ET L+L G G +++IA KL L TV YL KL +R Q Sbjct: 791 SQPQPALIEPLTEQETFILRLLGQGAPNKQIAAKLALKEGTVKVYLSRIYAKLGVSSRTQ 850 Query: 224 AIAKAIRF-GY 233 A+A A + G Sbjct: 851 ALAAARQLDGL 861 >gi|126348513|emb|CAJ90237.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 220 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAAR---- 172 L +G+++ + + + V + A G L + R++ A Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRRLAARYGDGGGDRAARAESTRA 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G Sbjct: 156 RLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESG 215 Query: 233 YI 234 ++ Sbjct: 216 FV 217 >gi|116050578|ref|YP_790603.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585799|gb|ABJ11814.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 268 Score = 84.9 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 + N+A + + + D F Sbjct: 32 QTLGQFAPVDNWAALIFSDSSPLILSFMEEEIEEIEPDPLISRYITGLYL-QDPFYQVSR 90 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 + ++ + + + + + + V L + + Sbjct: 91 NCRRGGLFHLADIVSEDFETTEYYNAYFAHYVVTDEVQYNVPLDGERTLCLSL-GSESRF 149 Query: 142 ANEVIIEAHGACYQV---------ITDFLELFKKRSSAAR-----------NLTERETSC 181 E I V D + K +AA LT RE+ Sbjct: 150 GAEQIALFELLRPWVIALMKKRIHFEDAVREEAKPIAAAEVEVQPWRGLISPLTARESDV 209 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++L DGY+++EIA++L LS+ T+ + KL+ + + Sbjct: 210 IRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLNVKSHSE 251 >gi|326383391|ref|ZP_08205078.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197797|gb|EGD54984.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 44/120 (36%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + ++ V G + +A Sbjct: 97 IKAGATGYLVKSAQRSELVAAVRATGDGQAVFTPGLAGLVLGEYRRIARSPGEADAAVPT 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+ G +S +IA +L +S TV ++G+A KL NR++ AI G Sbjct: 157 LTQRETEVLRHVAKGLSSRQIATRLEISPRTVENHVGAALRKLQLGNRVELTRYAIEHGL 216 >gi|315123291|ref|YP_004065297.1| two-component system regulatory protein [Pseudoalteromonas sp. SM9913] gi|315017051|gb|ADT70388.1| two-component system regulatory protein [Pseudoalteromonas sp. SM9913] Length = 204 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L KK+ S LT +E + LQ G +++ IA+KL S T+ ++ KL+ +R Sbjct: 133 LLKKQLSPQLCLTGKEQTVLQCLSLGMSNKVIAKKLDNSEGTIRNHVSQILAKLEVKDRT 192 Query: 223 QAIAKAIRFGYI 234 QA+ KAI I Sbjct: 193 QAVIKAINHNLI 204 >gi|298244586|ref|ZP_06968392.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552067|gb|EFH85932.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 523 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A +LT+RE ++L G + +IA L +S TV +L K R A+A A Sbjct: 458 SQATDLTQREIEVVRLLTQGQNTPQIARTLSISKKTVEHHLAHIYTKFGVSCRTAAVAYA 517 Query: 229 IRFGYI 234 ++ + Sbjct: 518 VQQNLV 523 >gi|256785730|ref|ZP_05524161.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] gi|289769622|ref|ZP_06529000.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] gi|289699821|gb|EFD67250.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] Length = 251 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 133 IRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 192 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 193 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 251 >gi|229818737|ref|YP_002880263.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564650|gb|ACQ78501.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 224 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 1/113 (0%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + +L E + A +A LTERE Sbjct: 109 AHPDRIVEAIRVVARGDAVLFPEAVRRLVAASP-AGATPSPADGPHGAAIGRLTEREEEV 167 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIA +L L V TV ++G+ KL A +R+QA A G++ Sbjct: 168 LRLVAAGMTNAEIAAQLWLGVETVKTHVGNVLAKLGARDRLQAAIVAYESGFV 220 >gi|169634637|ref|YP_001708373.1| response regulator [Acinetobacter baumannii SDF] gi|169797497|ref|YP_001715290.1| response regulator [Acinetobacter baumannii AYE] gi|184156579|ref|YP_001844918.1| response regulator [Acinetobacter baumannii ACICU] gi|213155689|ref|YP_002317734.1| response regulator [Acinetobacter baumannii AB0057] gi|215484933|ref|YP_002327172.1| response regulator [Acinetobacter baumannii AB307-0294] gi|260551084|ref|ZP_05825288.1| response regulator [Acinetobacter sp. RUH2624] gi|260556389|ref|ZP_05828608.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|301346538|ref|ZP_07227279.1| response regulator [Acinetobacter baumannii AB056] gi|301512072|ref|ZP_07237309.1| response regulator [Acinetobacter baumannii AB058] gi|301594838|ref|ZP_07239846.1| response regulator [Acinetobacter baumannii AB059] gi|169150424|emb|CAM88321.1| response regulator (Global antibiotic and cyanide control protein, LuxR/UhpA family) [Acinetobacter baumannii AYE] gi|169153429|emb|CAP02566.1| response regulator (Global antibiotic and cyanide control protein, LuxR/UhpA family) [Acinetobacter baumannii] gi|183208173|gb|ACC55571.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Acinetobacter baumannii ACICU] gi|193076104|gb|ABO10711.2| response regulator [Acinetobacter baumannii ATCC 17978] gi|213054849|gb|ACJ39751.1| response regulator [Acinetobacter baumannii AB0057] gi|213987818|gb|ACJ58117.1| response regulator [Acinetobacter baumannii AB307-0294] gi|260405851|gb|EEW99339.1| response regulator [Acinetobacter sp. RUH2624] gi|260410444|gb|EEX03743.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|322506466|gb|ADX01920.1| gacA [Acinetobacter baumannii 1656-2] gi|323516345|gb|ADX90726.1| response regulator [Acinetobacter baumannii TCDC-AB0715] Length = 211 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|11344597|gb|AAG34369.1|AF197465_1 nitrate/nitrite response regulator [Pseudomonas fluorescens] Length = 215 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ L +++ LTERE L+ GY+++ I KLG++ TV ++ + Sbjct: 136 RVMAQALRSPPRQADV--ELTERERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLH 193 Query: 215 KLDAVNRIQAIAKAIRF 231 KL +R++A A+ Sbjct: 194 KLGLRSRVEAAVWAMEH 210 >gi|15614686|ref|NP_242989.1| two-component response regulator [Bacillus halodurans C-125] gi|10174742|dbj|BAB05842.1| two-component response regulator [Bacillus halodurans C-125] Length = 223 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L G T+++IAEKL ++ TV Y+ K+ +R+QA G Sbjct: 163 SERERQIASLLAQGLTNKKIAEKLYITEGTVKNYISEIYSKIGIRDRMQASTYLRELGI 221 >gi|254242610|ref|ZP_04935932.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192] gi|126195988|gb|EAZ60051.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192] Length = 906 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 9/146 (6%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 ++ E E +++ G P+ ++ + A Sbjct: 768 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 819 Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ E + A L+ RE + L+L G +++EI+E+L +S+HTV ++ Sbjct: 820 CPGAQRMRALLPEPPAEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 879 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL R QA+A+A G + Sbjct: 880 ARHINDKLGVERRTQAVARAKHMGLL 905 >gi|311896491|dbj|BAJ28899.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 18/160 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138 + ++ R G +A V VI Sbjct: 67 LDVHLPGGGGVEVLRRSAGADGVR-FLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLV 125 Query: 139 ----LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + A + + LT+RE L+L GY +EI Sbjct: 126 KAIFRIADGDAVFSPRLAGFVLDAFAATDTPPVDEDLDRLTQREREVLRLIARGYAYKEI 185 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L +SV TV +++ + KL NR + A + Sbjct: 186 AKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 225 >gi|317133287|ref|YP_004092601.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ethanoligenens harbinense YUAN-3] gi|315471266|gb|ADU27870.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ethanoligenens harbinense YUAN-3] Length = 784 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 3/95 (3%) Query: 143 NEVIIEAHGACYQVITDFL---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + H V + K + + L+ ET L+L + +++EI E L Sbjct: 690 ACDMEYLHRLTAAVRAQAVLYPRFLKPLPAPSEPLSAAETQVLRLLCENLSNQEIGEILD 749 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + TV ++ KL R +A A + I Sbjct: 750 IKLATVKTHVSHILQKLGVSRRSEAKDAAEKLHLI 784 >gi|253687761|ref|YP_003016951.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754339|gb|ACT12415.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 218 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 11/160 (6%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--- 142 PI I ES L RL F I + + L Sbjct: 56 PIDVAVIDIAMPDESGLSLLTRLRQQRPQFRAIILSIYDTTAFVQSALDAGAGGYLTKRC 115 Query: 143 -NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194 E +++A + ++ LT RE L +G + + I Sbjct: 116 GPEELVQAVRVVSSGGIYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+L LS TV+ + + KL + ++ + A++ + Sbjct: 176 AEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 215 >gi|228911192|ref|ZP_04074997.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228848368|gb|EEM93217.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 189 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NR Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176 Query: 222 IQAIAKAIRFGYI 234 I+AI A G++ Sbjct: 177 IEAITIAEEKGWV 189 >gi|189460662|ref|ZP_03009447.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136] gi|189432621|gb|EDV01606.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136] Length = 250 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 36/77 (46%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D + + L+ RE L L G G +S+EIAE+L LS+HTV+ + + KL Sbjct: 174 ADGSRIDIDTYDCSDLLSRREKEILILIGRGKSSKEIAEELSLSIHTVSRHRQNILQKLQ 233 Query: 218 AVNRIQAIAKAIRFGYI 234 N QA A + Sbjct: 234 VSNSAQAFGIARELHLL 250 >gi|158339380|ref|YP_001520557.1| LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309621|gb|ABW31238.1| transcriptional regulator, LuxR family, putative [Acaryochloris marina MBIC11017] Length = 149 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 7/139 (5%) Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVIT 158 +L R + PV G + F + C T Sbjct: 10 QSELYQRCCSTYDHEHIMTGPVLGQGQLIGTINFARVGHGPAFNQFDLSRFGAVCTHFST 69 Query: 159 DFLELFK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 EL K + ++LT RE L G T+ EI L +S +TV L Sbjct: 70 RLAELRKHSVADSNPYWQSLTPRERQIANLVAQGLTNPEIGAALWISRNTVKQALKRMFR 129 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL+ +R++ + K +R G Sbjct: 130 KLEVSSRMEMVLK-LRDGL 147 >gi|118466851|ref|YP_883258.1| DevR family transcriptional regulator [Mycobacterium avium 104] gi|254776535|ref|ZP_05218051.1| two component transcriptional regulatory protein devr [Mycobacterium avium subsp. avium ATCC 25291] gi|118168138|gb|ABK69035.1| two component transcriptional regulatory protein devr [Mycobacterium avium 104] Length = 222 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + L ++ LTE+E + L L +G T+ +IA ++ L+ TV Y Sbjct: 125 LDNRAAAALMAKLRGSAAQADPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNY 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + KL R QA A + Sbjct: 185 VSRLLAKLGMERRTQAAVFASKL 207 >gi|34452032|gb|AAQ72483.1| DNA binding response regulator [Bacillus cereus] Length = 200 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|24375469|ref|NP_719512.1| DNA-binding nitrate/nitrite response regulator [Shewanella oneidensis MR-1] gi|24350319|gb|AAN56956.1|AE015828_12 DNA-binding nitrate/nitrite response regulator [Shewanella oneidensis MR-1] Length = 209 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153 + + + V ++ +++++ H Sbjct: 69 LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLDKLKNTMSGHRVI 128 Query: 154 YQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + ++L K + +LT RE LQ +G ++ I+E L +S TV ++ Sbjct: 129 SEEVAEYLYELKNAADEQEWVSSLTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|300782912|ref|YP_003763203.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792426|gb|ADJ42801.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 214 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRS---SAAR 172 + + GY++ +E + V A + L F + Sbjct: 91 SVFAAMRAGARGYLLKDAEPDEIIRAVRAVARREAIFGPDIANRVLAFFNQPPVSEPVFP 150 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G+++ IA L LS TV ++ + KL +R +AI +A G Sbjct: 151 ELTGREREVLALIAAGHSNSLIASTLCLSPKTVRNHISNVFAKLHVADRAEAIVRARDAG 210 Query: 233 Y 233 Sbjct: 211 L 211 >gi|294677360|ref|YP_003577975.1| LuxR family autoinducer-binding transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294476180|gb|ADE85568.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 250 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 66/228 (28%), Gaps = 13/228 (5%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ----QLICELHNYDLDSGDIPNILI 69 +++ + ++ F + L N+D + Sbjct: 11 ADDVATIWSMHCAQMAKFGFDRLIYGFTRFRATQNLGSLDDTLILSNHDPAYLNSFLGAG 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-- 124 + + W+ + + + L AG + Sbjct: 71 LFSEAPMVKWALDSVGACSWRVVAERMAAGELTEGERRVIDLNRRFQVLAGYSIGFPDTS 130 Query: 125 -GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180 + + I E HG +V+ + L R LT R+ Sbjct: 131 ARAKGAIGLCAQPGLTQADVDAIWEEHGRDLRVLNSIMHLKISALPFSTTRRPLTSRQRE 190 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ GDG TS +IA+ LG + TV +L A L+ QA+ KA Sbjct: 191 VLEWVGDGKTSADIAQILGPTTATVEKHLRLAREALEVETTAQALLKA 238 >gi|302547140|ref|ZP_07299482.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302464758|gb|EFL27851.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 178 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 38/105 (36%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V + V V GA + L LT RE+ Sbjct: 69 VHCDDPEEELVEAVRRASDGTGYVSPGLSGALLRFTRAMLPRHLSAVPTHAPLTSRESEV 128 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LQL G ++EIA +LGLS TV ++ + K +R Q IA Sbjct: 129 LQLVRKGMANKEIARRLGLSEKTVKFHVSNVLAKAHVASRAQLIA 173 >gi|309791843|ref|ZP_07686330.1| TPR repeat-containing transcriptional regulator LuxR [Oscillochloris trichoides DG6] gi|308226165|gb|EFO79906.1| TPR repeat-containing transcriptional regulator LuxR [Oscillochloris trichoides DG6] Length = 907 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +++A ++ + + LT RE + L G +++EIAE++ + Sbjct: 813 PHERPLLDAIDRILAACPAKPQVRMQPTHLIEPLTPRELEVIGLVAAGLSNQEIAERMVV 872 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V TV ++ + KLD ++R QA+ KA FG I Sbjct: 873 GVSTVKKHINNIYGKLDVLSRTQALKKAREFGLI 906 >gi|297624881|ref|YP_003706315.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297166061|gb|ADI15772.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 227 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 4/110 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQ 183 G S + + V+ +F + LTERE + L+ Sbjct: 111 DAGADDLISAIRRVDEGETLLRAELAASVLDEFSRAKSETPEHPEHRLSELTEREATILR 170 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +++EIA LG+S TV L KL NR QA A+R G Sbjct: 171 LLAQGASNQEIAVSLGVSEKTVRNRLSEIFSKLRLNNRTQAALYALREGI 220 >gi|302540281|ref|ZP_07292623.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457899|gb|EFL20992.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 32/64 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A L+ RE L L G+G T+ +I ++L LS TV ++ KL RIQA Sbjct: 159 EPRDEALAGLSPREREILALIGEGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQA 218 Query: 225 IAKA 228 A Sbjct: 219 AVLA 222 >gi|254522250|ref|ZP_05134305.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219719841|gb|EED38366.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 217 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RET L+ G +++ I E++ +S TV A++ S KL +R A+ +A+R Sbjct: 147 DRLSPRETEVLRHVASGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRR 206 Query: 232 GYI 234 G I Sbjct: 207 GII 209 >gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 225 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E +Q G + EIAE+L +S TV +++ + K + NR + AI Sbjct: 164 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222 >gi|300788334|ref|YP_003768625.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797848|gb|ADJ48223.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 225 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 1/106 (0%) Query: 129 NGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G ++A + +++ +LT RE L G Sbjct: 113 AGIRAVAGGDAVIAPALTRRLLDTYGHRLPDGGATPTPPADPRWESLTAREQDILVAIGQ 172 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G+T+ EIAE+L LS TV ++G K+ A +RIQA+ A G Sbjct: 173 GWTNGEIAERLVLSESTVKTHVGRVLAKIGARDRIQAVILAYDLGL 218 >gi|298250577|ref|ZP_06974381.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548581|gb|EFH82448.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1102 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ + S+ +LT RE L L G ++++IA+ L +S+ TV ++ + K Sbjct: 1024 ALSSARQPSVISSAPGISLTRREQEVLSLLAAGASNQDIAQALVISLDTVKKHVSNLFGK 1083 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L A NR QA+A A + Sbjct: 1084 LGAGNRTQAVALARARSLL 1102 >gi|227329373|ref|ZP_03833397.1| two-component system response regulator protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 209 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 11/160 (6%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--- 142 PI I ES L +RL F I + + L Sbjct: 47 PIDVAVIDIAMPDESGLSLLIRLRQQRPNFRAIILSIYDTTAFVQSALDAGAGGYLTKRC 106 Query: 143 -NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194 E +++A + + ++ LT RE L +G + + I Sbjct: 107 GPEELVQAVRVVSRGGLYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+L LS TV+ + + KL + ++ + A++ + Sbjct: 167 AEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206 >gi|29347298|ref|NP_810801.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253572832|ref|ZP_04850231.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|29339197|gb|AAO76995.1| transcriptional regulator, LuxR family [Bacteroides thetaiotaomicron VPI-5482] gi|251837564|gb|EES65656.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 258 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI G Sbjct: 196 PLTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQNSIEAIRIGYETG 255 Query: 233 YI 234 + Sbjct: 256 IL 257 >gi|311897945|dbj|BAJ30353.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 338 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 84/231 (36%), Gaps = 15/231 (6%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 + + +SL ++ RL + + A + A P+ ++ D ++ + Sbjct: 115 DQRGLELLASLDQVRDRLIQLASDATAE-----VLAFAPGGPQPAPVMEASRALDQETLE 169 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y D + + + ++ L ++ A P+ Sbjct: 170 RGVRMRTVYQDSV----RNDPATVQYARWLHGLGGAVRTTPTLPLRMIVVDNATAIVPID 225 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G + S ++ A + + QV L + R LT +E L+ Sbjct: 226 PDDPRKGAALLQSPGVVAALRALFD------QVWEHARPLGESPQRDPRGLTGQERELLR 279 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T E ++LG+S+ TV + +++DA +R QA + G++ Sbjct: 280 LLAEGLTDERAGQRLGVSLRTVRRMMADLMIRMDARSRFQAGIQVAALGWL 330 >gi|298241309|ref|ZP_06965116.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554363|gb|EFH88227.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L T+ EI E+L LS TV ++ + KL R QAI +A G Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLALSPKTVRNHVSNIFSKLQVATRAQAIIRAREAG 217 Query: 233 Y 233 + Sbjct: 218 W 218 >gi|298248918|ref|ZP_06972722.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546922|gb|EFH80789.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 788 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+R+ L+L +G T +EIAE+L +S TVNA+L K+ R A A+ Sbjct: 726 DQLTQRQVEILRLLAEGLTDKEIAERLCISPRTVNAHLNKIYPKIHVSTRSAATRYAVER 785 Query: 232 GYI 234 I Sbjct: 786 KLI 788 >gi|288962660|ref|YP_003452954.1| two-component response regulator [Azospirillum sp. B510] gi|288914926|dbj|BAI76410.1| two-component response regulator [Azospirillum sp. B510] Length = 229 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 54/173 (31%), Gaps = 17/173 (9%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 LP + + L + + V I Sbjct: 54 RAACERFLPTVL-ITDLQLPDGHGTDLIREVRDRFPATEIMVISVLGDEDSVVTAIRAGA 112 Query: 138 FL----MLANEVIIEAHG------------ACYQVITDFLELFKKRSSAARNLTERETSC 181 ++EA +I + K A LT RET Sbjct: 113 SGYILKDSEPVDMVEAVRGLIEGRSPISASIARYIIRRVQDGSFKDRKPAPLLTPRETDI 172 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+T +IA++LGLS TV +Y+ + KL+ +R +A+ +AI I Sbjct: 173 LWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKLI 225 >gi|238897394|ref|YP_002923071.1| putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465149|gb|ACQ66923.1| putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 210 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G ++ IA++L +S TV + + KLD Q I + R G Sbjct: 149 LTSRERQILKLITEGVSNRIIADRLYISEKTVETHRLNMMKKLDVHKVAQLIQWSQRLGI 208 >gi|229492666|ref|ZP_04386467.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121] gi|229320325|gb|EEN86145.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121] Length = 285 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 71/208 (34%), Gaps = 8/208 (3%) Query: 30 ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS---GLLP 86 A FA I A D R + I L L P +LI + + P Sbjct: 82 ADYFAAEGITHAYDHAVRPEAIQTLAALPLIVDRTPRVLIYLAARTHVRLGDRWFDSFTP 141 Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 ++ + ++ + +E + L R H + + + Sbjct: 142 LV-RRLERDIAVEDEVGRRLNLIRANAEAEQATLT-RTDIHDIAMELADLADHITDATLR 199 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + L + L RE L+ G ++ EIAE LGL +TV Sbjct: 200 ARIEAVGNRFAPI---LTPHSLAPPTLLRPREIEVLEHVARGSSNREIAEALGLLPNTVK 256 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +YL SA KL A NRIQA+ A G + Sbjct: 257 SYLKSAMRKLHANNRIQAVLAARELGVL 284 >gi|262204346|ref|YP_003275554.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087693|gb|ACY23661.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 213 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 38/95 (40%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A +++ + R + LTERE + L +G ++++IA +L Sbjct: 118 SAAAGRSLLDEKALRALMSRGRSADDPPRRTPPDGLTEREVEVIALIAEGLSNQQIATRL 177 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +S+ TV ++ K +R ++ A R Sbjct: 178 VVSLSTVKTHINHILAKTACRDRAALVSYAFRHHL 212 >gi|218289695|ref|ZP_03493903.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|258512532|ref|YP_003185966.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240152|gb|EED07336.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|257479258|gb|ACV59577.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 221 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARN----LTE 176 +GY++ + L I EAH QV+ L ++ + + LT Sbjct: 100 RAGVSGYIVKDAPMEDL-LRAIREAHEGRAMVHPQVMRAVLGEIERYAKPSDGWKDLLTA 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G ++E+IAE L +++ T ++ KL+ +R QA+ A R +I Sbjct: 159 REFDVLCQMAAGKSNEQIAESLHITLKTAKNHVSHILAKLNVSDRSQAVLHAYRERWI 216 >gi|146283498|ref|YP_001173651.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145571703|gb|ABP80809.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] Length = 872 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+L G +++EIAE+L +S+HTV + KL R QA+AKA + Sbjct: 812 LSNRELTVLRLIAQGCSNQEIAEQLFISLHTVKTHARRINTKLGVARRTQAVAKAKALAW 871 Query: 234 I 234 + Sbjct: 872 L 872 >gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 245 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L++ G ++ EI +L LS TV Y+ S K NR + + AI G Sbjct: 183 SLTPREQEVLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHG 242 Query: 233 YI 234 + Sbjct: 243 LV 244 >gi|70725661|ref|YP_252575.1| hypothetical protein SH0660 [Staphylococcus haemolyticus JCSC1435] gi|123748665|sp|Q4L8Q6|NREC_STAHJ RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|68446385|dbj|BAE03969.1| nreC [Staphylococcus haemolyticus JCSC1435] Length = 217 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L++RE L L GY +++IAEKL +SV TV A+ KLD ++ + + A+ Sbjct: 151 PFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLDLKSKPELVEYAL 210 Query: 230 RFGYI 234 + + Sbjct: 211 KKKLL 215 >gi|110637079|ref|YP_677286.1| fimbrial Z protein; signal transducer [Cytophaga hutchinsonii ATCC 33406] gi|110279760|gb|ABG57946.1| fimbrial Z protein; probable signal transducer [Cytophaga hutchinsonii ATCC 33406] Length = 212 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L+ G ++E+IA+ L +S T+ + + K + I A+ + Sbjct: 150 SDRELEVLRYICKGRSNEQIADILFISEKTIATHRRNIMKKAGVKKSTELIVWALDNKIV 209 >gi|328884518|emb|CCA57757.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 236 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 118 IRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDMDRLT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 178 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 236 >gi|319945594|ref|ZP_08019846.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319748193|gb|EFW00435.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 199 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 43/91 (47%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +++ H EL + + L+ +E + L+ G +++EIA++L LS Sbjct: 109 DLMRTLHTVLAGQKEYSPELMEGILAHPNPLSSQEQAVLKEVAKGASNQEIADRLFLSNG 168 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ Y+ KLDA NR +A A G++ Sbjct: 169 TIRNYMSGILTKLDAENRTEAAKIAQEKGWL 199 >gi|300114081|ref|YP_003760656.1| LuxR family two component transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540018|gb|ADJ28335.1| two component transcriptional regulator, LuxR family [Nitrosococcus watsonii C-113] Length = 209 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + L S LT RE +L G ++ IA +L +S+ TV + + Sbjct: 126 QETHKEQSRLQPGNLSQFEFLTRRERQVFKLLAQGKMNKHIAAELCISIRTVETHRANVM 185 Query: 214 VKLDAVNRIQAIAKAI 229 KL A + + AI Sbjct: 186 EKLKAKSLADIVRLAI 201 >gi|296120127|ref|ZP_06838681.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes DSM 20306] gi|295967281|gb|EFG80552.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes DSM 20306] Length = 228 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 28/72 (38%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E LT RE L+L GYT EI ++L +S+ TV + + K NR Sbjct: 156 EPEPISDPVVDALTRRELEVLRLLARGYTYREIGQELFISIKTVETHASNILRKTQQSNR 215 Query: 222 IQAIAKAIRFGY 233 Q A Sbjct: 216 YQLTRWAADRDL 227 >gi|311742180|ref|ZP_07715990.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314673|gb|EFQ84580.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 899 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +LT RE+ L+ G ++ +IA LG+S TV+ ++ + KL +R Sbjct: 828 LQIDLDDPDPHLTPRESEVLRWVSTGASNRQIARTLGISEGTVSVHVSNLLRKLGVGSRT 887 Query: 223 QAIAKAIR 230 +A +A R Sbjct: 888 EAAVRAAR 895 >gi|228940289|ref|ZP_04102860.1| Two-component protein Kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973205|ref|ZP_04133794.1| Two-component protein Kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982224|ref|ZP_04142510.1| Two-component protein Kinase [Bacillus thuringiensis Bt407] gi|228777511|gb|EEM25792.1| Two-component protein Kinase [Bacillus thuringiensis Bt407] gi|228786401|gb|EEM34391.1| Two-component protein Kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819415|gb|EEM65469.1| Two-component protein Kinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 592 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|15608030|ref|NP_215405.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|6137301|sp|Q10550|Y890_MYCTU RecName: Full=Putative HTH-type transcriptional regulator Rv0890c/MT0914 gi|3261566|emb|CAA97404.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] Length = 882 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190 E A +KR + +LT E ++L +G + Sbjct: 778 EAMGDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLS 837 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +++IA++L +S TV +L KL +R+Q + +A R G Sbjct: 838 NKDIAKRLFVSPRTVQTHLTHVYAKLGLPSRVQLVDEAARRG 879 >gi|312959040|ref|ZP_07773559.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311286810|gb|EFQ65372.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 909 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 71/223 (31%), Gaps = 19/223 (8%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + + A +A +F L LD+ ++ Sbjct: 698 AWLTRLGQTYNGEHAA-----AAPEFHPHLPQHIGLQQAALDAVRHQPEAALQRLEELAQ 752 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 H + +I + +L A L G + Sbjct: 753 HAHHCGRQMIALLALTQLAQLLLLGGQEAKARPVLARA-------LEAGAGGALQPFQRL 805 Query: 139 LMLANEVIIEA-----HGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTS 191 L + + E G Q + L ++ S L+ RE + LQL +G ++ Sbjct: 806 LDGHPDWMREQLSKDPQGLLNQSLLALLPAAEQIGTSPVHETLSVRELAVLQLIAEGCSN 865 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EI+ +L +S+HTV + KL R QA+A+A I Sbjct: 866 QEISNRLFISLHTVKTHASHINSKLGVERRTQAVARAQELRLI 908 >gi|256376044|ref|YP_003099704.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920347|gb|ACU35858.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + T+ + + + +++A + + + +++ R LTE+E + L L G G Sbjct: 109 GTDLCTAVRTVASGQSLLDA--RSTSALLNRIRREREQGDPIRMLTEQERTVLDLIGQGM 166 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+ +IAE + L+ TV Y+ KL R QA A + Sbjct: 167 TNRQIAESMFLAEKTVKNYVSHLLAKLGLERRTQAAVLASKL 208 >gi|27365565|ref|NP_761093.1| transcriptional regulator [Vibrio vulnificus CMCP6] gi|37680289|ref|NP_934898.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|320155960|ref|YP_004188339.1| DNA-binding response regulator, LuxR family [Vibrio vulnificus MO6-24/O] gi|13641466|gb|AAK31574.1| transcriptional regulator [Vibrio vulnificus] gi|27361713|gb|AAO10620.1| Transcriptional regulator [Vibrio vulnificus CMCP6] gi|37199036|dbj|BAC94869.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|319931272|gb|ADV86136.1| DNA-binding response regulator, LuxR family [Vibrio vulnificus MO6-24/O] Length = 212 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE + L+L G++S++IA L +S TV + + KLD + + Sbjct: 143 PAAQRPNPLSRREEAVLKLVAQGHSSKKIATLLEISYRTVETHRHNIKHKLDLNSTAELA 202 Query: 226 AKAIRFGYI 234 A+ G I Sbjct: 203 KYALEQGLI 211 >gi|329961013|ref|ZP_08299292.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] gi|328532299|gb|EGF59103.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] Length = 220 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 C L S A LT E S L+ G T++EIA LS HTV Sbjct: 125 FICNHASNLLLSGRNASSPAHPAIKDNLLTPAERSILKEIALGKTTKEIAADRNLSFHTV 184 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N++ + KL N +A A++ G + Sbjct: 185 NSHRKNIFRKLGVNNAHEATKYAMKAGIV 213 >gi|325677563|ref|ZP_08157226.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325551634|gb|EGD21333.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 206 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + + LT RE L L +G T++E+ ++L +S TV +L KL +R Sbjct: 133 RVLDRMRRPDQALTAREAELLSLLAEGLTNKELGKRLFISEATVKTHLAHIYAKLGVDSR 192 Query: 222 IQAIAKAIRF 231 A++ A+R Sbjct: 193 AAAVSIALRR 202 >gi|300087378|ref|YP_003757900.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527111|gb|ADJ25579.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 247 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A ++ + + +R++ A +LT RE L+L G+G +++EI+ L +++ TV + Sbjct: 146 LRAAVENLLQNGRKTLAERTAEAAHLTAREVDVLRLMGNGDSNKEISSSLNITLDTVKKH 205 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + + KL A +R A A + G Sbjct: 206 IRNVIDKLQARSRTHASIIAAQAGI 230 >gi|302544568|ref|ZP_07296910.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462186|gb|EFL25279.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 240 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ A + E ++ L+ F + LT Sbjct: 122 IRGGARGYVTKTITGTDLVDAIFRVSEGDAVFSPRLAGFVLDAFASTDAPPVDEDMDRLT 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 182 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 240 >gi|226948658|ref|YP_002803749.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] gi|226842846|gb|ACO85512.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] Length = 217 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL S NLTERE + ++ +G +++EIAE++ LS T+ + + KLD +R Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDR 203 Query: 222 IQAIAKAIRFGYI 234 Q A + + Sbjct: 204 TQIAIFAFKNNIV 216 >gi|223936934|ref|ZP_03628843.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894503|gb|EEF60955.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 226 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +++ L+ RE L L +G +++EI KL +S TV +L Sbjct: 145 ARMVVRSFIADTPEKDETGQLSGREQEILALLAEGLSNKEIGSKLNISFTTVRTHLMHIY 204 Query: 214 VKLDAVNRIQAIAKAIR 230 KL R +A AK +R Sbjct: 205 EKLHVRCRTEAAAKYLR 221 >gi|171914768|ref|ZP_02930238.1| DNA-binding response regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 212 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +QV+ F + A L+ RE L+L G+ +EIA++L LS+HTV+ YL Sbjct: 132 IAHQVLELFSRFAPRH--ADYGLSTRERETLELMVQGFIRKEIADRLNLSLHTVDTYLRG 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ R A+AKA++ G + Sbjct: 190 VYRKLEVNTRTGAVAKALKEGLV 212 >gi|29830997|ref|NP_825631.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608111|dbj|BAC72166.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 216 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS---AARN 173 L +G+++ L + V + A G ++I D+ ++ + Sbjct: 94 LHAGASGFLLKDVRRDDLVHAVRVVAAGESLVAPSVARRLIADYTRRGRRTAPVSGRLDV 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G ++ EIA + +S HTV ++G+ KL +R+QA+ A G Sbjct: 154 LTARERETLLHLAHGLSNAEIAAAMVVSEHTVKTHVGNVLSKLALRDRVQAVICAYETGL 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|86357364|ref|YP_469256.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86281466|gb|ABC90529.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 207 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE + L G +++ I +L L TV ++ KL A NR +A + Sbjct: 148 SLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGASNRTEAALQWRER 206 >gi|331694595|ref|YP_004330834.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|331696119|ref|YP_004332358.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949284|gb|AEA22981.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] gi|326950808|gb|AEA24505.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 214 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 V+ L+ +E L L DG T+++I +L L+ TV Y+ S Sbjct: 133 ASVLERLRRGEDTEDPRYAGLSPQERRILDLVADGLTNKQIGAELFLAEKTVKNYVSSLL 192 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL R +A A R Sbjct: 193 HKLGFSRRTEAAVYAERR 210 >gi|326940929|gb|AEA16825.1| two-component protein kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 595 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 508 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 568 YASTAYTKLGVRNKEEAVQKALEIGII 594 >gi|311897337|dbj|BAJ29745.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G+G ++ EIA++L L TV ++ + KL A NR+QA A R G Sbjct: 154 RLTGRELDVLALLGEGLSNAEIADRLFLGTGTVKDHISAILGKLGAANRVQAAVIAHRAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|313109354|ref|ZP_07795317.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881819|gb|EFQ40413.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 875 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 9/146 (6%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 ++ E E +++ G P+ ++ + A Sbjct: 737 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 788 Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ E + SA L+ RE + L+L G +++EI+E+L +S+HTV ++ Sbjct: 789 CPGAQRMRALLPEPPAEPAGSAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 848 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL R QA+A+A G + Sbjct: 849 ARHINDKLGVERRTQAVARAKHMGLL 874 >gi|310657820|ref|YP_003935541.1| two-component response regulator yhcz [Clostridium sticklandii DSM 519] gi|308824598|emb|CBH20636.1| Two-component response regulator yhcZ [Clostridium sticklandii] Length = 213 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ LT+RE + L G +++ IA+ L +S TV ++ S KL +R Q Sbjct: 150 SQKLTKRELQVMSLISKGMSNKAIAKHLEISDKTVKNHVSSILRKLSLNDRTQIAVY 206 >gi|239934239|ref|ZP_04691192.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291442685|ref|ZP_06582075.1| two-component system regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291345580|gb|EFE72536.1| two-component system regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G +++EIA ++ +S T ++ A KL +R Q + A Sbjct: 153 EGLTDREREAVALVAQGLSNDEIAGRMVISPLTAKTHVNRAMTKLRVRDRAQLVVLAYES 212 Query: 232 GYI 234 G + Sbjct: 213 GLV 215 >gi|258650774|ref|YP_003199930.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553999|gb|ACV76941.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 230 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 34/68 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT RET LQL G+ + EIA L L TV +LG KL +R +AIA Sbjct: 152 RAPELDRLTPRETEVLQLVARGHNNAEIAALLHLGETTVKTHLGRVLDKLGLRDRNKAIA 211 Query: 227 KAIRFGYI 234 A G + Sbjct: 212 FAYDSGLV 219 >gi|182415168|ref|YP_001820234.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842382|gb|ACB76634.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 238 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 36/84 (42%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 GA + + R A LT RE L+ +G S+EIA++L LS TV + Sbjct: 132 GASAKRLLQQEAHAAMRLGAGPALTNREREVLRYVAEGLGSKEIADRLALSTRTVENHRA 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + + + Q + A R G I Sbjct: 192 NILKRTGLRSVAQLVLYAARLGLI 215 >gi|171315760|ref|ZP_02904992.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria MEX-5] gi|171099059|gb|EDT43839.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria MEX-5] Length = 891 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 44/100 (44%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 T+ E + AC R LT +E LQL +GY++ I Sbjct: 791 TATRDPALTEYVTRLTQACGDFDESEDSTAGARPQLLDPLTPKEIRVLQLLAEGYSNSAI 850 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AEKL +S TV +L + K+ A +R QA+A + R G I Sbjct: 851 AEKLFVSDSTVRTHLRNINNKVGAHSRTQAVAISRRLGVI 890 >gi|188990306|ref|YP_001902316.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167732066|emb|CAP50258.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 921 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA L LS +TV +L + Sbjct: 827 RALTIQALLDRLSGDDDPANDLFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 887 VYRKLDARSREGALAQALQRGLL 909 >gi|160875358|ref|YP_001554674.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160860880|gb|ABX49414.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315267557|gb|ADT94410.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 214 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + +IAE L + + TV + + KL+A N + + R G Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214 >gi|37520342|ref|NP_923719.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211335|dbj|BAC88714.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 301 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + R A +LT+RE L L YT+ EIA+ L +S TV+++ Sbjct: 203 AIVRLIFEHAYLPEEPRKPGKLAISLTKREQEILGLIAQEYTNSEIAKHLYISPRTVDSH 262 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL N + A++ G + Sbjct: 263 RARLMQKLGTRNTAGLVRIAVQQGLL 288 >gi|307300268|ref|ZP_07580048.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307321145|ref|ZP_07600549.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306893220|gb|EFN24002.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904434|gb|EFN35018.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 262 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G ++ IA++LGLS +TV ++ + K++ NR +A ++ R Sbjct: 188 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRN 245 >gi|229030955|ref|ZP_04186971.1| Two-component protein Kinase [Bacillus cereus AH1271] gi|228730302|gb|EEL81266.1| Two-component protein Kinase [Bacillus cereus AH1271] Length = 592 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|269125106|ref|YP_003298476.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310064|gb|ACY96438.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 954 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 51/157 (32%), Gaps = 14/157 (8%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 Q + G F + LA + EA Sbjct: 796 EAQLARAHGRRDLAAWDAAAAAWERIGQPFARARALAEAAEAALAGGERDLAARRLQEAE 855 Query: 151 GACYQVITDFL-----------ELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAE 196 ++ L L SAAR+ LT RE L+L G T+ EIAE Sbjct: 856 ALAGRLRAAPLARRLEETARRGRLNGTAPSAARSPYGLTPRELEVLRLVAQGRTNREIAE 915 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S TV+ ++ + KL R +A A A R G Sbjct: 916 VLFISAKTVSVHVSNILAKLQVPTRGEAAATAHRLGL 952 >gi|153802230|ref|ZP_01956816.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|124122254|gb|EAY40997.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] Length = 214 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 1/121 (0%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 RL L G + G++ ++ + + H + + Sbjct: 89 RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A+ +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QAQASVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 Query: 227 K 227 Sbjct: 208 W 208 >gi|42782344|ref|NP_979591.1| response regulator receiver domain-containing protein [Bacillus cereus ATCC 10987] gi|42738269|gb|AAS42199.1| Response regulator receiver domain protein [Bacillus cereus ATCC 10987] Length = 592 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETSQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|21232702|ref|NP_638619.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767223|ref|YP_241985.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21114513|gb|AAM42543.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572555|gb|AAY47965.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 921 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA L LS +TV +L + Sbjct: 827 RALTIQALLDRLSGDDDPANDLFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 887 VYRKLDARSREGALAQALQRGLL 909 >gi|78049092|ref|YP_365267.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037522|emb|CAJ25267.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 923 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA L LS +TV +L + Sbjct: 827 RALTIQALLERLSGDDDPADDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 887 LYRKLDARSRESALAQALQRGLL 909 >gi|94985808|ref|YP_605172.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556089|gb|ABF46003.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 221 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Query: 140 MLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 +++ + +A A + L + LT +E LQL GY++ Sbjct: 113 DASSDTLADAIHAAARGEVRLHPEAARRLVRDFRTPEMRETLTPKEVIVLQLIARGYSNR 172 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +IA G++ TV ++ KL +R QA A+R G Sbjct: 173 DIARDQGVTEATVKTHVSRLLGKLGLESRTQAALYALRHGL 213 >gi|315123187|ref|YP_004065193.1| putative csg operon transcription regulator (LuxR family) protein [Pseudoalteromonas sp. SM9913] gi|315016947|gb|ADT70284.1| putative csg operon transcription regulator (LuxR family) protein [Pseudoalteromonas sp. SM9913] Length = 229 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE S + L G ++ +IA+KL +S HTV +L SA K ++ NR++ A R Sbjct: 163 LTKREKSVIHLIAQGASNNKIADKLNISDHTVKTHLYSAFKKTNSRNRVELANWAQR 219 >gi|315128079|ref|YP_004070082.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016592|gb|ADT69930.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 218 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 43/90 (47%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 +++ A Q D L LT+RE + + L +G ++EIAE+L +S Sbjct: 123 RRDIMCNALNRMLQFNKDALHKLTDGDIEPIKLTKREKAIISLMSNGSKNKEIAEELSIS 182 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 HTV +L SA K NRI+ ++ A + Sbjct: 183 PHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 225 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E +Q G + EIAE+L +S TV +++ + K + NR + AI Sbjct: 164 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222 >gi|298243182|ref|ZP_06966989.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556236|gb|EFH90100.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1019 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G TS +IAEKL +S+ TVN ++ S KL +R A A+ Sbjct: 957 GLTTREIEVLRLLATGMTSAQIAEKLVISILTVNTHVRSIYSKLGVTSRSAATRYALEHK 1016 Query: 233 YI 234 + Sbjct: 1017 LL 1018 >gi|289645094|ref|ZP_06477121.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505091|gb|EFD26163.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 421 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RE L+ G T+ +IA L ++ TV +++ KL A NR A+A+ Sbjct: 348 SLTPRECEVLRSLASGKTNAQIASSLFVTEGTVKSHVKHILRKLGAANRTDAVAR 402 >gi|254393534|ref|ZP_05008669.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|294811039|ref|ZP_06769682.1| LuxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|326439619|ref|ZP_08214353.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|197707156|gb|EDY52968.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|294323638|gb|EFG05281.1| LuxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAG 186 G + + + + + +++ + + L + A L TERE L+L G Sbjct: 119 GSDLVAAVRTVASGQSMLDPATTAR--LMNSLRAPRTPDPEADRLGGLTEREREILELIG 176 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G T+ +I +L L+ TV ++ KL RIQA A +F Sbjct: 177 EGLTNRQIGARLYLAEKTVKNHISRLLAKLGVERRIQAAVLATQFRL 223 >gi|54024864|ref|YP_119106.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016372|dbj|BAD57742.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 215 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + A ++ + + LTE+E + L L G+G T+ +IA ++ L+ TV Y+ Sbjct: 127 NRAAAALMAKLRAEAEADTGPLAALTEQERTLLALLGEGLTNRQIAARMFLAEKTVKNYV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRF 231 KL R QA A + Sbjct: 187 SRLLTKLGVERRTQAAVLAAKL 208 >gi|13471370|ref|NP_102936.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099] gi|14022112|dbj|BAB48722.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099] Length = 206 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 19/158 (12%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-----------IFT 135 I + + ++ L V H G + F Sbjct: 47 FDVAIIGWKLADMDGADVLAEVQSRKLDVR---ITVFSNDHDIGILKQCVRLGAQGYCFQ 103 Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + I+ AHG D ++ LT RE L + DG+T+ +I Sbjct: 104 FDDPAIIFDTILAVAHGRICIPYIDINKVNDT---PLAQLTVRERELLAVLSDGWTNLQI 160 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA-KAIRF 231 A + G+S +TV +L + KLD NR A+A A Sbjct: 161 ATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYARER 198 >gi|300698252|ref|YP_003748913.1| LuxR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074976|emb|CBJ54545.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum CFBP2957] Length = 252 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 62/209 (29%), Gaps = 13/209 (6%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 ++ + R+ A + +Y + + + Sbjct: 28 ESVRPILNHRHLA--CGHGRTTSSGVAMDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWL 85 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 S P+ + + E + + + A V + G + Sbjct: 86 STRRPVYF---DAASPWEGTDPVWLEKFVKHDLHNCAADAVFDEANCVGTYFSFHALPTV 142 Query: 142 A--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 ++ HGA + + ++ S A LTERE L G G ++ E Sbjct: 143 EEGCLDATLRDLTPALHGALLRAVASVERDLQQASQALATLTEREREVALLIGQGRSNAE 202 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 IA+ + S TV YL S K NR+ Sbjct: 203 IAQVVCKSESTVKHYLSSIMDKTGCENRV 231 >gi|297194807|ref|ZP_06912205.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720731|gb|EDY64639.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S LT RE L L G++++EIA +L +S TV ++ A KL A +R Q + Sbjct: 156 DLSERLSALTVREREVLVLVAGGHSNDEIATRLEVSPLTVKTHVNRAMAKLGARDRAQLV 215 Query: 226 AKAIRFGYI 234 A G + Sbjct: 216 VTAYESGLV 224 >gi|254388484|ref|ZP_05003718.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294814098|ref|ZP_06772741.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442500|ref|ZP_08217234.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702205|gb|EDY48017.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294326697|gb|EFG08340.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 207 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + + R +LTERE L Sbjct: 97 AGATGYLLKAERPEELFAAIRAAAQGRTALSAPVATRVMDRMRGGGRPSLTERELDILGQ 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A++ A + Sbjct: 157 LARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVSVAKEQRLL 206 >gi|46580981|ref|YP_011789.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450401|gb|AAS97049.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris str. Hildenborough] gi|311234669|gb|ADP87523.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris RCH1] Length = 216 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +S L++RE L+L +G+ ++ +AEKL +S TV + + KL Sbjct: 139 LRHGRRDEASMLDLLSDREKQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTA 198 Query: 220 NRIQAIAKAIRFGY 233 + + + AI G Sbjct: 199 STAELVTFAIEHGL 212 >gi|229046883|ref|ZP_04192515.1| Two-component protein Kinase [Bacillus cereus AH676] gi|228724428|gb|EEL75753.1| Two-component protein Kinase [Bacillus cereus AH676] Length = 592 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|229179482|ref|ZP_04306835.1| Two-component protein Kinase [Bacillus cereus 172560W] gi|228603983|gb|EEK61451.1| Two-component protein Kinase [Bacillus cereus 172560W] Length = 592 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + +AA LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ +A+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQRALEIGII 591 >gi|229818603|ref|YP_002880129.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564516|gb|ACQ78367.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 221 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +LT+RE L +G +++EIA KL LS TV ++ KL A +R Q + Sbjct: 147 KAVPGLDHLTDREREVLVTVAEGLSNDEIAAKLFLSPSTVKTHVSRTMTKLAARDRAQLV 206 Query: 226 AKAIRFGYI 234 A G + Sbjct: 207 VAAYESGLV 215 >gi|256378301|ref|YP_003101961.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922604|gb|ACU38115.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 8/117 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--------ITDFLELFKKRSSAARNLTE 176 G E L+ A + G Q L + LT Sbjct: 98 GASGFVLKDCDPEDLVSAIRRLAAGQGLLDQAVTRRVIGEFARRAPLPAVDPAVEDLLTA 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + L +G ++ EIAE L + TV ++LG A K+ A +R+Q + A + G Sbjct: 158 REKEVVVLLAEGRSNVEIAEALFIEPSTVKSHLGRAMTKIGARDRLQTVVWAYQNGL 214 >gi|77408114|ref|ZP_00784861.1| response regulator [Streptococcus agalactiae COH1] gi|77173298|gb|EAO76420.1| response regulator [Streptococcus agalactiae COH1] Length = 196 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+++E L L G TS+EIA L LS TV Y + KL NR++A+ A Sbjct: 133 SNPLSKQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 192 Query: 231 FGYI 234 ++ Sbjct: 193 KDWL 196 >gi|47564405|ref|ZP_00235450.1| two-component protein Kinase [Bacillus cereus G9241] gi|47558557|gb|EAL16880.1| two-component protein Kinase [Bacillus cereus G9241] Length = 592 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|332685604|ref|YP_004455378.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332369613|dbj|BAK20569.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 201 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G +++IAE L LS TV Y+ + K +RI+AI A G Sbjct: 140 PLTDREIEILNLLKKGANTKQIAENLFLSNGTVRNYISAILNKTGTKSRIEAINLANEQG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|300791111|ref|YP_003771402.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800625|gb|ADJ51000.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 151 GACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 G V+ ++ + S A LTERET L+L G T+ +IAE+L LS TV Sbjct: 132 GLAGLVLGEYRRMADASSEDAAGAEPPRLTERETDVLRLVAKGLTARQIAERLVLSHRTV 191 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ S KL NR++ AI G Sbjct: 192 ENHVQSTLRKLQLHNRVELARYAIEHGL 219 >gi|297160777|gb|ADI10489.1| putative two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 262 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + +++ + A + + K R +LTERE L G Sbjct: 117 AALFTVAAGDAVVSPGLARALIHAVRHGPRPEVPIAKGRL---EDLTERERDILVAVASG 173 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA +L ++ TV +++ K+ A R+QA+ A G + Sbjct: 174 RSNAEIAAQLSIATTTVKSHVSRILTKIGARARVQAVVFAYESGLV 219 >gi|302532669|ref|ZP_07285011.1| two component system response regulator [Streptomyces sp. C] gi|302441564|gb|EFL13380.1| two component system response regulator [Streptomyces sp. C] Length = 191 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F ++ + A LT+RE + L G G ++EEIA +L +S T + Sbjct: 100 GVTRRLIAEFAARSRRPAPAEGLERLTDREREVMALVGTGLSNEEIARRLVVSPLTAKTH 159 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 160 VSRTMVKLGARDRAQLVVLAYETGLV 185 >gi|256822565|ref|YP_003146528.1| two component LuxR family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796104|gb|ACV26760.1| two component transcriptional regulator, LuxR family [Kangiella koreensis DSM 16069] Length = 214 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q++ ++ LT RET L+ G +++ IA KL ++ TV ++ Sbjct: 135 QILAKSFRPKAEKEEFLEALTNRETQILRYISQGDSNKVIARKLEIAESTVKVHVKHLLK 194 Query: 215 KLDAVNRIQAIAKAIRFGY 233 K++ +RI+A A+ Sbjct: 195 KINLKSRIEAALFAVENKL 213 >gi|218513962|ref|ZP_03510802.1| probable two-component response regulator protein [Rhizobium etli 8C-3] Length = 111 Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ + L +S +LT RE + L G +++ I +L L TV ++ Sbjct: 34 MSTKVMENSLH---DAASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 90 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL NR +A + Sbjct: 91 ILSKLGVSNRTEAALQWRER 110 >gi|323976153|gb|EGB71246.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] Length = 209 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147 I E+ L RL F I + + L E ++ Sbjct: 53 IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDTPTFVQSALDAGASGYLTKRCGPEELV 112 Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A H C I L ++ + A LT RE L G + +EIA KL Sbjct: 113 QAVRSVGMGGHYLCADAI-RALRGGEQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV+ + + KL+ + I+ + A+ + Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALNHHLL 206 >gi|312140713|ref|YP_004008049.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890052|emb|CBH49370.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 222 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 1/104 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190 + + + + +IEA + L + + ++T RE L+ G + Sbjct: 110 ELLAAIRTVHRGDAVIEARSTRKLLQHVGPMLSDSAAPSLPEDMTPREIEVLEAMAHGLS 169 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA+K +S TV ++G K + +R+QA+ A + G + Sbjct: 170 NSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVGLV 213 >gi|256396913|ref|YP_003118477.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363139|gb|ACU76636.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 227 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G ++ E+A +L LS TV ++ KL +R QA+ A G Sbjct: 160 ALTPREREILALMGRGLSNTELAARLVLSEATVKTHVAHIFTKLSLRDRAQAVVVAYETG 219 Query: 233 YI 234 + Sbjct: 220 LV 221 >gi|182437703|ref|YP_001825422.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778339|ref|ZP_08237604.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466219|dbj|BAG20739.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658672|gb|EGE43518.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 221 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 4/135 (2%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + + V L Sbjct: 84 FDLDEYAYDGLRAGASGFLVKDALPEELLAGIRAVAAGDAVVAPTLTRRLLDAYVHHLPA 143 Query: 164 FKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +AA LTERE L + G G+++ EIA +L L+ TV ++ K A Sbjct: 144 TPGAPAAADPRITALTEREREILTVIGQGWSNSEIAARLHLAESTVKTHVTRILAKTGAR 203 Query: 220 NRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 204 DRVQAVILAYDTRLV 218 >gi|169630793|ref|YP_001704442.1| two-component LuxR family response regulator [Mycobacterium abscessus ATCC 19977] gi|169242760|emb|CAM63788.1| Putative two-component system response regulator, LuxR family [Mycobacterium abscessus] Length = 215 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 3/123 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + + + + A Sbjct: 95 RAGARGYVTKTISGSELADAVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPALDPE 151 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE L +SV TV + + K NR A Sbjct: 152 LDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHT 211 Query: 231 FGY 233 Sbjct: 212 RQL 214 >gi|119963767|ref|YP_948582.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119950626|gb|ABM09537.1| putative transcriptional regulator, LuxR family [Arthrobacter aurescens TC1] Length = 544 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 36/86 (41%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A D LEL + S A LT RE L+L G + IA +L LS TV + Sbjct: 458 ADLGATPAAADVLELTGETSVDASPLTSRELEVLRLIAGGNANRTIARELYLSEKTVARH 517 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL +R A A G I Sbjct: 518 VSNILSKLAVPSRAAATGYAFEHGLI 543 >gi|300790034|ref|YP_003770325.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799548|gb|ADJ49923.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +++ +L + AR LTERE L L G ++ EIA KL + TV ++G Sbjct: 133 RLLDRYLADERDPMDIARLGVLTEREKDVLGLIARGLSNSEIAAKLYIGETTVKTHVGRV 192 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R+ A+ A G + Sbjct: 193 LGKLRLRDRVHAVVFAYESGLV 214 >gi|325673029|ref|ZP_08152723.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325556282|gb|EGD25950.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 253 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 59/218 (27%), Gaps = 4/218 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ E R+ + A + + D + + + Sbjct: 25 RTVPEFRTRIAAAMTDVFPVRVATCFVGDSYDSQFTDPDAALVGGHGWERNRPVYQEKWA 84 Query: 72 YGD-DFLFHFNSGLLPIIWQSIQEETVIES-SGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D L S+ + + + + G + A + L Sbjct: 85 RHDIFATPEARRRLEHNRVASLGDLQDLPAGAAAYVRDYLGAWGLRSVSAMHLDLPGRAR 144 Query: 130 GYV-IFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGD 187 V +F + L + + L R LTER+ +L D Sbjct: 145 ALVGLFDGDDSALGTRDLATLRLLARHLSALTRNLETAPRRDPYAALTERQRDVARLVAD 204 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 G ++ IA +L L+ TV Y+ +R Q Sbjct: 205 GMSNAAIARRLMLAEDTVKKYVSRILAATGCASRTQLA 242 >gi|209695795|ref|YP_002263725.1| nitrate/nitrite response regulator protein NarP [Aliivibrio salmonicida LFI1238] gi|208009748|emb|CAQ80054.1| nitrate/nitrite response regulator protein NarP [Aliivibrio salmonicida LFI1238] Length = 203 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160 L + + V +I + +I Q + Sbjct: 66 LHALRNEGVTCPIVILTVSDNKQDIKTLIKAGADGYLLKDSEPDELIALLKQAIQGDKAY 125 Query: 161 LE-----LFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 E L + ++ + +LT RE LQ G ++++A+KL +S TV ++ S Sbjct: 126 SEQVKICLEEGKNGDDKLSSLTARELEILQNVAKGMRNKQVADKLFISEATVKVHMKSLL 185 Query: 214 VKLDAVNRIQA 224 KL+ +R+ A Sbjct: 186 KKLNVKSRVAA 196 >gi|168789970|ref|ZP_02814977.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli O157:H7 str. EC869] gi|189370464|gb|EDU88880.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli O157:H7 str. EC869] Length = 240 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|110596769|ref|ZP_01385059.1| regulatory protein, LuxR:Response regulator receiver [Chlorobium ferrooxidans DSM 13031] gi|110341456|gb|EAT59916.1| regulatory protein, LuxR:Response regulator receiver [Chlorobium ferrooxidans DSM 13031] Length = 217 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D L A LT E ++L G +++EIA K +S HTV + + KL Sbjct: 135 DILLKKDGPMEDASLLTTSEIEIVRLIAAGLSTKEIAVKKHISFHTVMTHRKNIFRKLSV 194 Query: 219 VNRIQAIAKAIRFGYI 234 + + + AI+ G I Sbjct: 195 SSSPELMMYAIKAGLI 210 >gi|86142105|ref|ZP_01060629.1| two-component response regulator [Leeuwenhoekiella blandensis MED217] gi|85831668|gb|EAQ50124.1| two-component response regulator [Leeuwenhoekiella blandensis MED217] Length = 216 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L+ G + +IAE L LS TV ++ + KL ++I+A+ KA + Sbjct: 155 SLSSREVEVLEQLSKGLSYTKIAENLFLSPSTVRKHIENIYKKLQVHSKIEAVEKARQNN 214 Query: 233 YI 234 I Sbjct: 215 II 216 >gi|330897589|gb|EGH29008.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 222 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 40/95 (42%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A +++ E ++ L RE L L G+++ EI EKLG Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGAALPETLPPRERQVLGLVAGGFSNREIGEKLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A++ KL A +R QA + + G + Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|307131286|ref|YP_003883302.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Dickeya dadantii 3937] gi|306528815|gb|ADM98745.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Dickeya dadantii 3937] Length = 215 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 16/142 (11%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY----- 154 RL L + F V + M ++++ H A Sbjct: 70 LARLRETPLSGRIVVFTVSNHEEDVISAFKSGADGYLLKDMEPEDLLVALHQAAAGKMVL 129 Query: 155 ------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + E + + LT RE L+L G ++ IA KL ++ TV + Sbjct: 130 SDALTPVLAASLRETRSSDTRDIQQLTPREKDILKLIAQGLPNKVIARKLTITESTVKVH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIR 230 + K+ +R++A ++ Sbjct: 190 VKHLLKKMKLRSRVEAAVWVVQ 211 >gi|298385200|ref|ZP_06994759.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14] gi|298262344|gb|EFI05209.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14] Length = 258 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI G Sbjct: 196 PLTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQNSIEAIRIGYETG 255 Query: 233 YI 234 + Sbjct: 256 IL 257 >gi|171913285|ref|ZP_02928755.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 207 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 2/115 (1%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 + L GY+ T+ L + A G Y L R ++ RE Sbjct: 93 VQMALDAGAAGYLQKTASRDELLTALRRVAAGGSYLPPELEQRLADLRLCV--GISMRER 150 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G+ +++IA +S TV ++ KL +R QA A+AIR G + Sbjct: 151 EILELIAKGHANKQIAALFAISEDTVKRHVSHILEKLGVHDRAQATAEAIRRGIV 205 >gi|126433026|ref|YP_001068717.1| LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126232826|gb|ABN96226.1| transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 544 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 1/116 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERE 178 +R+ + + L + + E+ + A + LT RE Sbjct: 429 VRLRMAQACRRMNDDDTAAMELDAARRVFEQLGAAPALAQVAEVSTNAPAGAPSGLTTRE 488 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIA L +S TV +LG+ KLD +R A A A + + Sbjct: 489 LEVLRLLATGATNREIARTLVISEKTVARHLGNIFNKLDVSSRTAATAYAYQHDLV 544 >gi|22126270|ref|NP_669693.1| fimbrial Z protein; signal transducer [Yersinia pestis KIM 10] gi|45441481|ref|NP_993020.1| putative two-component response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51596249|ref|YP_070440.1| two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108807299|ref|YP_651215.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|145598492|ref|YP_001162568.1| two-component response regulator [Yersinia pestis Pestoides F] gi|149366138|ref|ZP_01888173.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|153947114|ref|YP_001401133.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|165927181|ref|ZP_02223013.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165939732|ref|ZP_02228274.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166009343|ref|ZP_02230241.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166210811|ref|ZP_02236846.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167401017|ref|ZP_02306520.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420230|ref|ZP_02311983.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466513|ref|ZP_02331217.1| DNA-binding response regulator, LuxR family protein [Yersinia pestis FV-1] gi|170024496|ref|YP_001721001.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186895283|ref|YP_001872395.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218929039|ref|YP_002346914.1| putative two-component response regulator [Yersinia pestis CO92] gi|229894596|ref|ZP_04509777.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|229897323|ref|ZP_04512479.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|21959244|gb|AAM85944.1|AE013841_9 fimbrial Z protein; probable signal transducer [Yersinia pestis KIM 10] gi|4106621|emb|CAA21376.1| unnamed protein product [Yersinia pestis] gi|45436342|gb|AAS61897.1| putative two-component response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51589531|emb|CAH21161.1| putative two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108779212|gb|ABG13270.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|115347650|emb|CAL20563.1| putative two-component response regulator [Yersinia pestis CO92] gi|145210188|gb|ABP39595.1| two-component response regulator [Yersinia pestis Pestoides F] gi|149292551|gb|EDM42625.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|152958609|gb|ABS46070.1| DNA-binding response regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|165912320|gb|EDR30955.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165920849|gb|EDR38097.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165991898|gb|EDR44199.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166207991|gb|EDR52471.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166961925|gb|EDR57946.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049406|gb|EDR60814.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|169751030|gb|ACA68548.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186698309|gb|ACC88938.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229693660|gb|EEO83709.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702351|gb|EEO90369.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|262361879|gb|ACY58600.1| putative two-component response regulator [Yersinia pestis D106004] gi|262365982|gb|ACY62539.1| putative two-component response regulator [Yersinia pestis D182038] Length = 210 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|116671431|ref|YP_832364.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116611540|gb|ABK04264.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 545 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 5/180 (2%) Query: 59 LDSGDIPNILIETYGD---DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP- 114 + + L D + + + + E + + + L L Sbjct: 364 AAARRSADELAAVAQDCAMPMVQAASCQAGGAVLLAEGEPARAQPVLRRAWMLWRELGVP 423 Query: 115 -FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 A + + +E A A GA LE + A Sbjct: 424 FEAARCRTLVGRACRASGDEDAAEMDFEAARAEFLALGAAPAAAWTSLEHTPVQEKDAGP 483 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G + IA +L LS TV ++ + +KL +R+ A A G Sbjct: 484 LTPREIEVLRLVAAGKANRVIAGELYLSEKTVARHISNIFLKLGLRSRVAATRYAFEHGL 543 >gi|332304832|ref|YP_004432683.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172161|gb|AEE21415.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 209 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 50/94 (53%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++E+I H EL LT++E L+LA DG ++E+IA KL L Sbjct: 116 PSHELIAAIHKVHQGGAAIAPELMVGSWMEKDPLTDKERRALRLAKDGLSTEDIASKLFL 175 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV YL SA+ KL+A NRI+A A + G++ Sbjct: 176 STGTVRNYLSSASNKLNAKNRIEAARIAHQNGWL 209 >gi|299068412|emb|CBJ39636.1| putative response regulator, LuxR family [Ralstonia solanacearum CMR15] Length = 210 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCL 182 GYV+ + L + G + + + ++ + A LT RE L Sbjct: 98 RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVAPIPAEALTPRERDIL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G++++ IA++LGLSV TV ++ S KL + + + A+ G Sbjct: 158 DGVAQGWSNKRIADELGLSVRTVESHRLSLKRKLGIEGQAELVKFAVEAG 207 >gi|254445671|ref|ZP_05059147.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198259979|gb|EDY84287.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 213 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + SS +L+ RE L+ G+T++EIA KL ++ TV+ +L + KL Sbjct: 139 SYFRQEAQVSSDVDSLSNREREVLEFVAQGFTNKEIAAKLSVTPETVHWHLKNCYKKLHV 198 Query: 219 VNRIQAIAKAIR 230 R +A K + Sbjct: 199 RTRTEAAMKLRQ 210 >gi|170682157|ref|YP_001744145.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SMS-3-5] gi|191172365|ref|ZP_03033906.1| transcriptional regulator CsgD [Escherichia coli F11] gi|312968892|ref|ZP_07783099.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 2362-75] gi|170519875|gb|ACB18053.1| transcriptional regulator CsgD [Escherichia coli SMS-3-5] gi|190907249|gb|EDV66847.1| transcriptional regulator CsgD [Escherichia coli F11] gi|312286294|gb|EFR14207.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 2362-75] gi|320178529|gb|EFW53494.1| Transcriptional regulator CsgD for 2nd curli operon [Shigella boydii ATCC 9905] gi|323174844|gb|EFZ60459.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli LT-68] gi|323185839|gb|EFZ71200.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1357] gi|333005785|gb|EGK25303.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-218] Length = 190 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 130 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184 >gi|71068215|gb|AAZ23070.1| possible response regulator [Streptomyces fradiae] Length = 241 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G ++ E+A +L LS TV ++ KL +R QA+ A G Sbjct: 165 ALTPREREVLTLMGRGLSNAELARELTLSEATVKTHVSRIFAKLALRDRAQAVVLAYETG 224 Query: 233 YI 234 + Sbjct: 225 LV 226 >gi|70728347|ref|YP_258096.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68342646|gb|AAY90252.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 848 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEK 197 + + E ++ L S+ L+ RE LQL G ++++IAE+ Sbjct: 751 PQALHELRLRQPLLLAAGEALQTPSSAGPLENRESLLSLRELQVLQLIAQGCSNQQIAEQ 810 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S+HTV + KL R QA+AKA G Sbjct: 811 LFISLHTVKTHGRRIHSKLGVERRTQAVAKAQALGL 846 >gi|239939391|ref|ZP_04691328.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 325 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ ++AA LTERE + L G G ++EEIA +L +S T + Sbjct: 234 GVTRRLIAEFAARSKEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 293 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 294 VSRTMVKLGARDRAQLVVLAYESGLV 319 >gi|256390621|ref|YP_003112185.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356847|gb|ACU70344.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 365 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 17/227 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPNI 67 ++ ++E+ RL + + + AL P ++ D Sbjct: 117 EELVGVEEVRTRLKTLSAQAQTEVIALV------PDPIQRPDTLAASKPLDAALLGRGVA 170 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + Y L + I + + +V L + P+ Sbjct: 171 MRTIY----LNSIRNDPASIAYTDWLAGVGGQVRTAPTVPLRLIVFDRTTALVPLDPRDT 226 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G + T V+ Q+ L + L E L++ + Sbjct: 227 SAGATVLTGIG------VVSAMCALFEQIWATANPLGLPNPPDTQGLGPEEREILRMLAN 280 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T E IA +LG+S TV +L +R Q +A G++ Sbjct: 281 GETDEHIARRLGVSTRTVGRKASELMRRLGTRSRFQMGVRASELGWL 327 >gi|261365900|ref|ZP_05978783.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] gi|288565546|gb|EFC87106.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] Length = 220 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + V + + A LT RE L G++++ IA K Sbjct: 121 RKAAEGDNVFSPEMTARLVQSLIQPNTPPATRALDALTTRELEILGYLAAGHSNKIIARK 180 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L+ T+ ++ S KL+ +R+QA A++ Sbjct: 181 LNLAESTIKVHVQSILRKLELSSRVQAAVYAVQH 214 >gi|146340687|ref|YP_001205735.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193493|emb|CAL77509.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. ORS278] Length = 133 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 40/70 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R S A LT RE L L +G +++EIA LG+SVHT ++GS KLDA R A Sbjct: 62 HGRDSDAFQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDA 121 Query: 225 IAKAIRFGYI 234 +A A R G I Sbjct: 122 VAHAARRGII 131 >gi|326331825|ref|ZP_08198112.1| putative LuxR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] gi|325950322|gb|EGD42375.1| putative LuxR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] Length = 972 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 43/111 (38%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + + A ++T + + + LT RE+ L Sbjct: 861 LRAGGDTVAARELADQARETAKRLGAQPLLDHLLTLGTTPQRSAAGPSGQLTARESEILA 920 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EI ++L +S TV+ ++ + KL A R +A A R G + Sbjct: 921 LVAAGRSNGEIGKQLFISTKTVSVHVSNILAKLGASGRTEAAAIGRRRGLV 971 >gi|301299416|ref|ZP_07205696.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853022|gb|EFK80626.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 218 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +T+ E + G G +++EI+++L LS TV +L KL+ +R Q A++ Sbjct: 154 AALITDAEWRVIYQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQ 213 Query: 231 F 231 Sbjct: 214 N 214 >gi|300214009|gb|ADJ78425.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] Length = 218 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +T+ E + G G +++EI+++L LS TV +L KL+ +R Q A++ Sbjct: 154 AALITDAEWRVIYQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQ 213 Query: 231 F 231 Sbjct: 214 N 214 >gi|300783203|ref|YP_003763494.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792717|gb|ADJ43092.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 224 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 37/86 (43%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A ++ L LT RE L L G G ++ +IA K+ + TV A+ Sbjct: 130 AQRVIARLSGGQLARAAAARERIAALTPREREVLTLLGSGLSNADIAAKMFVVEGTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + +L A NR+QA A G + Sbjct: 190 VSTILNRLGAKNRVQAAITAYEAGLV 215 >gi|312196246|ref|YP_004016307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227582|gb|ADP80437.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 230 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAAR------N 173 + G + E L+ A ++ IT L + S AAR Sbjct: 101 LTAGASGFLLKDVSPEHLVAAVRLVRMGDALLAPAITRRLVERFASRDSGAARLHRDLSA 160 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G ++ E+A + LS TV ++ KL +R QA+ A G Sbjct: 161 LTPRELEVLEFLAQGLSNAELAARFQLSEATVKTHVARILAKLQVRDRAQAVIVAYETGL 220 Query: 234 I 234 I Sbjct: 221 I 221 >gi|257068341|ref|YP_003154596.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256559159|gb|ACU85006.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 225 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ S L + V + A G +I DF+ ++ + A +L Sbjct: 101 LRAGASGFLLKDSTPEELVHAVRVVADGQSLLAPPVTRALIADFVARPERSAGADASLAV 160 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L+ G + EIA +L ++ TV ++ KL +R Q + A G Sbjct: 161 LTERELEVLRGVARGLANREIAAELVMAEQTVKTHVSRILGKLMLRDRTQLVVAAYESGL 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|227892373|ref|ZP_04010178.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|227865780|gb|EEJ73201.1| response regulator [Lactobacillus salivarius ATCC 11741] Length = 220 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +T+ E + G G +++EI+++L LS TV +L KL+ +R Q A++ Sbjct: 156 AALITDAEWRVIYQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQ 215 Query: 231 F 231 Sbjct: 216 N 216 >gi|163754837|ref|ZP_02161958.1| two-component response regulator [Kordia algicida OT-1] gi|161324904|gb|EDP96232.1| two-component response regulator [Kordia algicida OT-1] Length = 225 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L+L +T++EI E+L +S TV + + +K N + AI+ Sbjct: 153 DALTSRETDILKLLCQQFTTKEIGEQLFISPKTVETHKTNLLLKTGVKNTAGLVIYAIQN 212 Query: 232 GYI 234 + Sbjct: 213 KIV 215 >gi|90961071|ref|YP_534987.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820265|gb|ABD98904.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 218 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +T+ E + G G +++EI+++L LS TV +L KL+ +R Q A++ Sbjct: 154 AALITDAEWRVIYQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQ 213 Query: 231 F 231 Sbjct: 214 N 214 >gi|58616223|ref|YP_195352.1| hypothetical protein p1B112 [Azoarcus sp. EbN1] gi|56315684|emb|CAI10328.1| hypothetical protein p1B112 [Aromatoleum aromaticum EbN1] Length = 228 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 12/180 (6%) Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D F+ H PI+ + S + ++ G L G+ Sbjct: 42 WMPRYARNNWALVDPFVLHTQHSNTPILVPYDVD--GESSGQKEFLKKLYGELFAYGVVV 99 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARN 173 P+ L + +++ L+ + I EA + + E+ ++ Sbjct: 100 PIHL-AQERLALLYAGNNQELSRKTIEEAVPIVAAIGQEAAIWLEAQREVEERN--RVLP 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E L LA G+++++IA ++ TVN A KL +R A A R G Sbjct: 157 LTATELELLSLARRGFSTKDIAAMQKITTATVNNIFRRANEKLGTHSRQDAAITAERLGL 216 >gi|37528106|ref|NP_931451.1| hypothetical protein plu4274 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787543|emb|CAE16646.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 219 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 4/122 (3%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 +R V + L + + + L + Sbjct: 93 YYHEFMQPNNIQDIAEIFIRQHNQIIAGVSLLRDTLFTPKDF----NRLSAILPLIELAV 148 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT +E + L +G +++ IA+ L +S+ TV +L + K NR + Sbjct: 149 RDLLPETPTILTAKEQEIINLIREGSSNKRIAQILNISLSTVKTHLRNIFAKTKVTNRTE 208 Query: 224 AI 225 + Sbjct: 209 LV 210 >gi|296388940|ref|ZP_06878415.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 268 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 + N+A + + + D F Sbjct: 32 QTLGQSAPVDNWAALIFSDSSPLILSFMEEEIEEIEPDPLISRYITGLYL-QDPFYQVSR 90 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 + ++ + + + + + + V L + + Sbjct: 91 NCRRGGLFHLADIVSEDFETTEYYNAYFAHYVVTDEVQYNVPLDGERTLCLSL-GSESRF 149 Query: 142 ANEVIIEAHGACYQV---------ITDFLELFKKRSSAAR-----------NLTERETSC 181 E I V D + K +AA LT RE+ Sbjct: 150 GAEQIALFELLRPWVIALMKKRIHFEDAVREEAKPIAAAEVEVQPWRGLISPLTARESDV 209 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++L DGY+++EIA++L LS+ T+ + KL+ + + Sbjct: 210 IRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLNVKSHSE 251 >gi|271961858|ref|YP_003336054.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505033|gb|ACZ83311.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 G V+ ++ L +R + LT+RET L+L G + ++AE+L LS TV ++ Sbjct: 130 GLAGLVLGEYRRLATQRPADDGPRLTDRETEVLRLVAKGLSYRQVAERLVLSHRTVQNHV 189 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 + KL NR + + AI G Sbjct: 190 QNTLNKLQLHNRAELVRYAIERGL 213 >gi|284032390|ref|YP_003382321.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811683|gb|ADB33522.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 228 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R + L+ R ++ G T++EIA +L +S+ TV ++L + KL NR + Sbjct: 146 RGRGMPSPELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLAAIQAKLGVRNRTEI 205 Query: 225 IAKAIRFGYI 234 A + Sbjct: 206 AVWAWENHLV 215 >gi|212640439|ref|YP_002316959.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561919|gb|ACJ34974.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 213 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ +F +L KK +LT+ E S L+L GYT +EIA L +S+ TV ++ Sbjct: 132 IAHKIRKEFCKLRKKEQMTC-SLTKTEISILKLIDQGYTQKEIANHLVISIQTVKNHVSR 190 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A N A+ KA G++ Sbjct: 191 ILKKLSAKNSKHAVCKAREMGFL 213 >gi|116251601|ref|YP_767439.1| two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256249|emb|CAK07330.1| putative two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 207 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ + L + +LT RE + L G +++ I +L L TV ++ Sbjct: 130 MSAKVMENSLH---GGTPEKNSLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQ 186 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL A NR +A + Sbjct: 187 ILSKLGASNRTEAALQWRER 206 >gi|300782878|ref|YP_003763169.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792392|gb|ADJ42767.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + ++ + + ++ A +++ +F L + +T RE L L G Sbjct: 106 RPADLLAAIEVVASGDALL-APSVTRRLVAEFARLPSGPVTRLDGVTAREQEVLTLIARG 164 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++EIA +L L + TV ++G KL A +R Q + A G + Sbjct: 165 LSNDEIAARLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV 210 >gi|326315443|ref|YP_004233115.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372279|gb|ADX44548.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 254 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 E A L+ RE L+ G +++EIA L ++ TV ++ KL Sbjct: 178 AIACEPEAATPGGASPLSPREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLG 237 Query: 218 AVNRIQAIAKAIRF 231 +R+QA A Sbjct: 238 LSSRVQAAVYASER 251 >gi|329940271|ref|ZP_08289553.1| respose regulatory protein [Streptomyces griseoaurantiacus M045] gi|329301097|gb|EGG44993.1| respose regulatory protein [Streptomyces griseoaurantiacus M045] Length = 211 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 37/109 (33%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G L + L+ RE+ LQ Sbjct: 102 AGATGYLLKAERPEELFAAIRDAAAGRAALSPPVADRLLARLRDPRPALSARESEILQQL 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +L KL R A+A A + Sbjct: 162 SGGLGNREIARALFISEATVKTHLQRIYGKLGVETRAGAVAVAKERRLL 210 >gi|284042145|ref|YP_003392485.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946366|gb|ADB49110.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Query: 151 GACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 V L F ++ LT+RE L L G T+ EIA +L + + TV Sbjct: 127 LIAPNVTRRLLATFADQAPVVPVQPIDPLTKREEEVLALVARGRTNAEIATELFVGLSTV 186 Query: 206 NAYLGSATVKLDAVNRIQAIAKAI 229 ++ S KL A NR++ A Sbjct: 187 KTHVASLMTKLGARNRVEIAIWAY 210 >gi|271966918|ref|YP_003341114.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510093|gb|ACZ88371.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 226 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 7/91 (7%) Query: 151 GACYQVITDFLELFKKRSSAARNL-------TERETSCLQLAGDGYTSEEIAEKLGLSVH 203 V + F +R ++ L T RE L L G ++ EIA L LS+ Sbjct: 126 LLAPTVTRRLIAEFARRPEPSQPLAGELGGVTGRERDVLALIARGLSNTEIAGHLRLSLA 185 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G KL A +R Q + A G + Sbjct: 186 TVKTHVGRLLSKLGARDRAQLVILAYETGLV 216 >gi|222150392|ref|YP_002559545.1| two-component response regulator NreC [Macrococcus caseolyticus JCSC5402] gi|222119514|dbj|BAH16849.1| two-component response regulator NreC [Macrococcus caseolyticus JCSC5402] Length = 216 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L GY ++EIAE L +SV TV A+ KL+ ++ + + A++ Sbjct: 154 LTKRELEILPLIAKGYGNKEIAEMLYVSVKTVEAHKARIMDKLELKSKPELVEYALKKKL 213 Query: 234 I 234 + Sbjct: 214 L 214 >gi|327313696|ref|YP_004329133.1| LuxR family transcriptional regulator [Prevotella denticola F0289] gi|326945245|gb|AEA21130.1| transcriptional regulator, LuxR family [Prevotella denticola F0289] Length = 209 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++EIAEKL +S+ TV + + KL + A+ GY Sbjct: 144 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGY 203 Query: 234 I 234 I Sbjct: 204 I 204 >gi|325860035|ref|ZP_08173162.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS 18C-A] gi|325482561|gb|EGC85567.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS 18C-A] Length = 203 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++EIAEKL +S+ TV + + KL + A+ GY Sbjct: 138 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGY 197 Query: 234 I 234 I Sbjct: 198 I 198 >gi|311897623|dbj|BAJ30031.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 331 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 78/233 (33%), Gaps = 15/233 (6%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 + + ++ S + + RL + ++ A ++ + + Sbjct: 110 TATDASSEQLSGPESIRERLAELAGSVRQE-----VATFAPGGAHSEEDLRASRTPNAAL 164 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + + Y D H L + W + + + + + P Sbjct: 165 LERGVQMRTVYLDSVRNH-RPTLDHVTW---LNQQGGQVRTVPELPIRMIIFDRQQAVLP 220 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + + G V+ + V + + + A + +E + Sbjct: 221 IDTEDARAGAVVLRG------AGTVAALCALFESVWDNAIPVGDVPKCEADGMPPQELAV 274 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ GYT E IA+++G+S T + + +LDA +R +A A++ G++ Sbjct: 275 LKMLSQGYTDEAIAKRMGVSPRTARRFAANLMERLDARSRFEAGVHAVQDGWL 327 >gi|300790735|ref|YP_003771026.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800249|gb|ADJ50624.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 221 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 4/106 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + ++ V LE LT RE L L Sbjct: 114 AAMRVAARGDALIDPSVTRRLVAK----FATVLEPAAAEPPELARLTSREREVLLLLAGA 169 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA KL + TV ++ KL +R+ A+ A R + Sbjct: 170 CSNAEIARKLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKLV 215 >gi|291518206|emb|CBK73427.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 210 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 39/73 (53%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ E +++++E+E +QL +G++++EIA+KL LS TV YL + Sbjct: 134 ALMNSATEEDSGFDYQSKDISEKEYEVIQLVAEGFSNKEIAQKLFLSEGTVRNYLSTILE 193 Query: 215 KLDAVNRIQAIAK 227 KL+ +R Q Sbjct: 194 KLELRDRTQLAIF 206 >gi|282859564|ref|ZP_06268669.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] gi|282587792|gb|EFB92992.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] Length = 200 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++EIAEKL +S+ TV + + KL + A+ GY Sbjct: 135 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|260591672|ref|ZP_05857130.1| transcriptional regulator, LuxR family domain protein [Prevotella veroralis F0319] gi|260536472|gb|EEX19089.1| transcriptional regulator, LuxR family domain protein [Prevotella veroralis F0319] Length = 204 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++EIAEKL +S+ TV + + KL + A+ GY Sbjct: 139 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 198 Query: 234 I 234 + Sbjct: 199 V 199 >gi|228958760|ref|ZP_04120472.1| Response regulator receiver [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800899|gb|EEM47804.1| Response regulator receiver [Bacillus thuringiensis serovar pakistani str. T13001] Length = 537 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLE--LFKKRSSAAR-N 173 +R G S L + ++ H +++ + E LF+ RS Sbjct: 416 IRNGADGYVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGIEYG 475 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + IA L LS TV Y + KL NR +A+ KA G Sbjct: 476 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 535 Query: 234 I 234 + Sbjct: 536 L 536 >gi|111224287|ref|YP_715081.1| LuxR family transcriptional regulator [Frankia alni ACN14a] gi|111151819|emb|CAJ63539.1| Putative LuxR-family transcriptional regulator [Frankia alni ACN14a] Length = 349 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G ++ E A +L +S TV AYL S KL NR A+ A + G Sbjct: 287 ALTPRELEVLAQVALGLSNVETARRLTVSPETVKAYLRSIMRKLGVRNRTAAVHAARQLG 346 Query: 233 YI 234 + Sbjct: 347 ML 348 >gi|329928337|ref|ZP_08282208.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937894|gb|EGG34299.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 599 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 36/68 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S+A +LT RE LQ +G + IA KL LS TV Y S +KL NR +A+ Sbjct: 531 KVSSAYDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQ 590 Query: 227 KAIRFGYI 234 KA G + Sbjct: 591 KAREAGLL 598 >gi|302519560|ref|ZP_07271902.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302428455|gb|EFL00271.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 234 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G++ +EIA++L +SV TV +++ + KL NR + A Sbjct: 172 DKLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNRHELTRWAAAR 231 Query: 232 GYI 234 + Sbjct: 232 RLV 234 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075725|gb|ADJ65124.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ + LT RE + + G +++EIA L ++ TV ++ + Sbjct: 134 LVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEVAESTVKIHVQN 193 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL +R+Q A+ G Sbjct: 194 LLRKLQLSSRVQIAVYAVEHGL 215 >gi|226363539|ref|YP_002781321.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226242028|dbj|BAH52376.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 224 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 16/155 (10%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF---------------- 138 E S + RL + + + Sbjct: 66 ELGDGSGVDATRRLLERHPALRVLVVTMHEDDESLVASVRAGARGYLVKGADPGEVERAV 125 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +AN +I + ++ + + LT+RE L L GY + I+ +L Sbjct: 126 RAVANGEMILGAAVAARAMSFMAASRRMEPAVFPELTDREREVLDLVARGYDNASISRRL 185 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS TV ++ + KL +R AI +A G Sbjct: 186 VLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 220 >gi|119776080|ref|YP_928820.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768580|gb|ABM01151.1| transcriptional regulator, LuxR family [Shewanella amazonensis SB2B] Length = 221 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 12/162 (7%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG-FHKNGYVIFTS 136 ++ +P++ + + L L A + +R F + + Sbjct: 56 AALDNKGIPLLASRLTPHVPV----ALYQVERHSLDQEAALLLGIRGLLFADQRMDLMLT 111 Query: 137 EFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCLQLAGDGY 189 + + + ++ + ++ + ++LT RE + +QL G G Sbjct: 112 GLRKMVADELWFDRPLISKMFRRLVNKLDTNSDVSPDAMAMLQSLTGRECTIIQLVGSGA 171 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++EIA++L +S HTV A++ S K + NR++ + A Sbjct: 172 RNKEIADRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQSH 213 >gi|111223755|ref|YP_714549.1| transcriptional regulator [Frankia alni ACN14a] gi|111151287|emb|CAJ63001.1| Probable transcriptional regulator [Frankia alni ACN14a] Length = 252 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 15/168 (8%) Query: 66 NILIETYGDDFLFH----FNSGLLPI-IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 L + H + L + W S++E E+ + + + IA Sbjct: 73 VTLRNMRRHPLIRHYVKTSDRRPLTVTDWISLREWKSSEAGS----DIYAAVNFYDHIAI 128 Query: 121 PVRLGFHKNGYVIFTSEF---LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 P+ + E+I+ H + L ++R + LT Sbjct: 129 PLDSPPGTMRSFALGRDDGPFTDQERELILALHPLLIAMDGKARRLQQQRPTP---LTIT 185 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 E + L DG TS +I +L S TV +LGS KL NRI A+ Sbjct: 186 EGRIMHLVRDGLTSRQIGIRLNRSHRTVEKHLGSIYGKLGVTNRIDAV 233 >gi|300782049|ref|YP_003762340.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791563|gb|ADJ41938.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA R +T+RE L L G +++EIA L +S T ++ K+ A +R Q + Sbjct: 150 TSAVREITDREREVLGLVAGGMSNDEIAAHLVISTATARTHVSRIMTKIGARDRAQLVVL 209 Query: 228 AIRFGYI 234 A G + Sbjct: 210 AYESGLV 216 >gi|238024126|ref|YP_002908358.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237878791|gb|ACR31123.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 520 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLS 201 + +A +I + + + A LT RE + G + ++IA+ L LS Sbjct: 409 MQDASWFSRTLIEKLANVRRANAPDAGAHLSDLTARECDVFEQLCKGLSDKDIAKALELS 468 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TV ++ + KLD +R +AI A G Sbjct: 469 PATVRNHVATIYAKLDVHSRAEAIVWAQTRG 499 >gi|229162147|ref|ZP_04290117.1| Two-component protein Kinase [Bacillus cereus R309803] gi|228621304|gb|EEK78160.1| Two-component protein Kinase [Bacillus cereus R309803] Length = 557 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 470 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRN 529 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 530 YASTAYTKLGVRNKEEAVQKALEIGII 556 >gi|256377110|ref|YP_003100770.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921413|gb|ACU36924.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 223 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + E ++ ++ LTERE ++L G T++E+A +L L V TV +LG Sbjct: 136 LLAHLAPERGAERAEESAALVEPLTERELEVVRLVALGRTNDEVAGELHLGVATVKTHLG 195 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +A KL A NR++ A A R G + Sbjct: 196 NAQRKLAARNRVEVAAWAWRTGLV 219 >gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 226 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ET + G ++ EIAEKL +S T+ +++ + K NR + A Sbjct: 161 PSHVELTPTETKVVSFVAQGLSNREIAEKLNVSQRTIESHVSNMLNKTSLNNRTELARWA 220 Query: 229 IRFGYI 234 + + Sbjct: 221 MDSRLV 226 >gi|85708084|ref|ZP_01039150.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] gi|85689618|gb|EAQ29621.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] Length = 141 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G +++EIA LG+S +TV ++ + +KL+ R +A+ A Sbjct: 79 GLTRRECEILDHLAKGASNKEIARSLGVSPNTVKTHIANLYMKLEVTGRGKAVEAARSLA 138 Query: 233 YI 234 I Sbjct: 139 LI 140 >gi|84494899|ref|ZP_00994018.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649] gi|84384392|gb|EAQ00272.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649] Length = 937 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 4/148 (2%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKNGYVIFTSEFLMLANEVIIEA 149 + + + + +R + G V ++ + EA Sbjct: 786 GLLDSVLGREGAEDLLRSAVAMDQRMGAPLFVGYDLAAIVDHLRRSGAPTRRIEAARREA 845 Query: 150 HGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 Q+ T L LT RE L+L +G ++ +++E+L ++ +TV Sbjct: 846 VATASQLRTPRLRGRVGLDGPHSGPEGLTFRELEVLRLVAEGLSNRQLSERLFITENTVT 905 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S K NR A A G + Sbjct: 906 NHVRSILQKTGVANRTMAARYAAEHGLL 933 >gi|297194274|ref|ZP_06911672.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152196|gb|EDY64473.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 256 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 5/118 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTE 176 +R G ++ A ++ E + L S+A LTE Sbjct: 136 LRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRSLAAEYGNSAARTAMERAALTE 195 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G++ Sbjct: 196 REAAVLRLMARGLSNSEIAAQLFVGTETVKTHVSAVLAKLGARDRTQAVIAAYESGFV 253 >gi|153825634|ref|ZP_01978301.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|149740664|gb|EDM54771.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] Length = 214 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 RL L G + G++ ++ + + H + + Sbjct: 89 RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QAQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 Query: 227 K 227 Sbjct: 208 W 208 >gi|24372453|ref|NP_716495.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24346436|gb|AAN53940.1|AE015531_6 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1] Length = 255 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 16/161 (9%) Query: 78 FHFNSGLLPIIWQSIQEETVIE----SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 ++ +P++ + + L L G+ F + ++ Sbjct: 90 AALDNKGIPLLASRLVPHIPVALYQVERNSLDQESAMLLGIR-GLLFT-----DQRMDLM 143 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGD 187 T M+A+E+ + +L + A LT RE + +Q Sbjct: 144 LTGLRKMVADELWYDRTLLSKMFRRVVQKLDGQNDMPADTVAMLQALTSRERTIIQFVSS 203 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 G ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 204 GARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 244 >gi|298247093|ref|ZP_06970898.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549752|gb|EFH83618.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 202 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +RE L+L +G +++EIA+ L ++ T+ YL KL+A +R QAI A + G+ Sbjct: 141 LNKRELEVLRLLAEGRSNQEIADTLIVAKSTIKWYLKQIYSKLNAHSRTQAIVCARQIGF 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|298250649|ref|ZP_06974453.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548653|gb|EFH82520.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 11/122 (9%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 R + + L EV + Sbjct: 100 GVKGYWLKSARSSDIRQAVLDVADNKRTLDPEVREVLEKYEGHALIQV-----------E 148 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L+L G + EIA++L +S+ TV AYL S KL +R + IA A + G Sbjct: 149 RLTNREFAVLRLIIQGTRNSEIAQRLAISIKTVEAYLTSLYGKLGVQSRAEVIALAQKQG 208 Query: 233 YI 234 + Sbjct: 209 LL 210 >gi|271969439|ref|YP_003343635.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512614|gb|ACZ90892.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 V ++ F R + LT RE ++L +G ++++IA KL +S T Sbjct: 125 LLSPSVTRRVVQQFAHRPAPVSGDGLAVLTVREREVVRLVAEGLSNDQIAAKLVISPLTA 184 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A +KL+A +R Q + A G + Sbjct: 185 KTHVTRALMKLNARDRAQLVILAYETGLV 213 >gi|225028039|ref|ZP_03717231.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353] gi|224954639|gb|EEG35848.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353] Length = 223 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+ E +Q G G +++EIA +L LS TV YL S KL+ +R Q A++ Sbjct: 154 TEELTKTEWRVIQKIGCGMSNKEIASELALSEGTVRNYLSSVLSKLELRDRTQLAIWAVQ 213 Query: 231 FG 232 G Sbjct: 214 TG 215 >gi|167763457|ref|ZP_02435584.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC 43183] gi|167698751|gb|EDS15330.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC 43183] Length = 217 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 V + R LT RE L+ +G ++EIA++L +S +TV+ + Sbjct: 134 AEHVRAQMRRSDEGRR---EELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHL 190 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KLDA N I AI G I Sbjct: 191 MDKLDARNVADLIMTAISKGII 212 >gi|126740186|ref|ZP_01755875.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126718641|gb|EBA15354.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 215 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 46/102 (45%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + G F + A +++ F+++ K + +L+ +E + L+ Sbjct: 99 AMQAGAAGFAPRSGEAEGLLETCLDVAAGKMVFPFIDVRKMQQDPIHSLSRKERAILESL 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ E+++ L +S +TV +L + KL NR QAIA Sbjct: 159 AKGMSNRELSKALQISTNTVKFHLSNIYEKLSVKNRAQAIAY 200 >gi|317503562|ref|ZP_07961584.1| transcriptional regulator [Prevotella salivae DSM 15606] gi|315665304|gb|EFV04949.1| transcriptional regulator [Prevotella salivae DSM 15606] Length = 212 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I + C ++ L + + LT ET L+ G T+ EIAEK S HT Sbjct: 117 AIHDRRFICQRMAEMLLAPAQPQLE-HVKLTPTETEILKDIALGMTTREIAEKRFSSFHT 175 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN + + KL +A A+R G I Sbjct: 176 VNTHRKNIFRKLGVNTIHEATKYALRAGLI 205 >gi|297197400|ref|ZP_06914797.1| LuxR family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146707|gb|EDY61643.2| LuxR family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 995 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A LT RE L+L G ++ +I E+L ++ T + ++ + KL A +R +A+A Sbjct: 920 AAPTASPLTAREQDVLRLLARGRSNRQIGEELFITGKTASVHVSNILAKLGAASRTEAVA 979 Query: 227 KAIRFGYI 234 A R G I Sbjct: 980 VAYREGLI 987 >gi|218898278|ref|YP_002446689.1| Two-component protein Kinase [Bacillus cereus G9842] gi|218542184|gb|ACK94578.1| Two-component protein Kinase [Bacillus cereus G9842] Length = 595 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 508 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 568 YASTAYTKLGVRNKEEAVQKALEIGII 594 >gi|256395183|ref|YP_003116747.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361409|gb|ACU74906.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 4/109 (3%) Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + A E ++ + + + LTERE L L Sbjct: 109 EPADLLRGLRAVAAGEALLAPSVTRRLIAEFAVRSKRTGPNPAAEQIKALTEREREVLAL 168 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EEIA++L LS T ++ + VKL A +R Q + A G Sbjct: 169 VAAGLSNEEIADRLVLSPLTAKTHVSRSMVKLGARDRAQLVVLAYESGL 217 >gi|111024836|ref|YP_707256.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|29647414|dbj|BAC75412.1| response regulator [Rhodococcus sp. RHA1] gi|110823815|gb|ABG99098.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 209 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ RE ++L G T+ EIAE+L +S TV ++ S KL R + A Sbjct: 146 DSLSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDA 205 Query: 232 GYI 234 G + Sbjct: 206 GLL 208 >gi|333009595|gb|EGK29047.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-272] Length = 216 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|332978107|gb|EGK14844.1| nitrate/nitrite response regulator protein NarL [Psychrobacter sp. 1501(2011)] Length = 219 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 14/152 (9%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----------EFLM 140 + + S ++ + F V + E + Sbjct: 63 LDQNMPGLSGLDTVKQIRDQGNQAKILMFTVSDSGDDIHNALKLGVNGYLLKDMQPEQVA 122 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEK 197 L + + L + + NLT RE +++ G +++ I + Sbjct: 123 LDIRKALRGELVVSSRLAAVLAQALRTPNLDDIVSNLTSRELQVVKMIAKGQSNKMIGNE 182 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LG+S TV ++ K + R+ A+ Sbjct: 183 LGISESTVKVHVKHILNKTNLRTRVDVAVWAV 214 >gi|331657961|ref|ZP_08358923.1| regulatory protein SdiA [Escherichia coli TA206] gi|331056209|gb|EGI28218.1| regulatory protein SdiA [Escherichia coli TA206] Length = 87 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 149 AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 1 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 60 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 61 HQKNMQKKINAPNKTQVACYAAATGLI 87 >gi|257790333|ref|YP_003180939.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|317489781|ref|ZP_07948280.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|257474230|gb|ACV54550.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|316911127|gb|EFV32737.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 213 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173 +RLG + V+ +V+ L + + A N Sbjct: 94 LRLGAKGYLIKQEVATIAPALRTVMAGQSVLGGEVLDRMDVLMSRGPACAENAPGGEMRS 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE++ ++L +G ++EIA +L LS TV ++ + KLD NR Q + + R Sbjct: 154 GLTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211 >gi|118617914|ref|YP_906246.1| two component transcriptional regulatory protein DevR [Mycobacterium ulcerans Agy99] gi|183981531|ref|YP_001849822.1| two-component transcriptional regulatory protein DevR [Mycobacterium marinum M] gi|118570024|gb|ABL04775.1| two component transcriptional regulatory protein DevR [Mycobacterium ulcerans Agy99] gi|183174857|gb|ACC39967.1| two-component transcriptional regulatory protein DevR [Mycobacterium marinum M] Length = 216 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L +R LT++E + L L +G T+++IA+++ L+ TV Sbjct: 122 RSLLDNRAAAALMSRLRGVVERPDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 Y+ KL R QA A Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFAAEL 207 >gi|297156704|gb|ADI06416.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 195 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L L +G ++ EIA +L + TV ++ K +R QA+ A Sbjct: 118 PLPDGLTPREAEVLTLVAEGLSNAEIARRLHIGPATVKTHIA----KAGVRDRAQAVRYA 173 Query: 229 IRFGY 233 R G Sbjct: 174 YRSGI 178 >gi|290961078|ref|YP_003492260.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260650604|emb|CBG73720.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS LT RE L G +++EIAE+L +S TV ++ KL A +R Q + Sbjct: 156 RSERLATLTGREREVLVQVAGGLSNDEIAERLEVSPLTVKTHVNRGMAKLGARDRAQLVV 215 Query: 227 KAIRFGYI 234 A G + Sbjct: 216 FAYESGLV 223 >gi|302552866|ref|ZP_07305208.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470484|gb|EFL33577.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 226 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDG 188 + + + E ++ + L +LT RE + LA +G Sbjct: 114 LLAGLRTVASGESLLSPVATRSLITRFLLAPAPGTHLAPPERLADLTVREREVMALAAEG 173 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIAE L LS TV ++ A KL+A +R Q + A + G + Sbjct: 174 RSNTEIAEDLTLSPLTVRTHIHRAMTKLNARDRAQLVVIAYQTGLV 219 >gi|229145796|ref|ZP_04274176.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|296503725|ref|YP_003665425.1| two-component protein kinase [Bacillus thuringiensis BMB171] gi|228637627|gb|EEK94077.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|296324777|gb|ADH07705.1| two-component protein kinase [Bacillus thuringiensis BMB171] Length = 592 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|253991535|ref|YP_003042891.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638413|emb|CAR67035.1| transcriptional regulator of sqaz gene cluster [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782985|emb|CAQ86150.1| putative transcriptional regulator [Photorhabdus asymbiotica] Length = 236 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 17/220 (7%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 +K+ ++ EL + N I +F Y+I +P + + N ++ + Sbjct: 12 IQKAKTIPELE---KKVLNAINYLDFEFYSIYQEEKYPFTTKKYVLITNLHTETMGNYDK 68 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + +P I+ + + I+ ++ Sbjct: 69 NDNHDSDQLMNGDFIFSIPSIYDEKTSKH-----TDFMIEKPNENEIKNIISIKIKSYHG 123 Query: 128 KNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETS 180 + + +++ I+ C + + K L+ RE Sbjct: 124 ERSIFSVARKEGPISHNEILNKAGMLGILANECIKTFNNLKNKEDKIIVPT--LSTREVE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ +G TS EIA L +S TVN ++ + KL N Sbjct: 182 VIRWTCEGKTSAEIANILDISTRTVNFHINNIMEKLVVPN 221 >gi|83748008|ref|ZP_00945038.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551] gi|207738688|ref|YP_002257081.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609] gi|83725310|gb|EAP72458.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551] gi|206592056|emb|CAQ58962.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609] Length = 252 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 62/209 (29%), Gaps = 13/209 (6%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 ++ + R+ A + +Y + + + Sbjct: 28 ESVRPILNHRHLA--CGHGRTTSSGVAMDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWL 85 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 S P+ + + E + + + A V + G + Sbjct: 86 STRRPVYF---DAASPWEGTDPVWLEKFVKHDLRNCAADAVFDEANCVGTYFSFHALPTV 142 Query: 142 A--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 ++ HGA + + ++ S A LTERE L G G ++ E Sbjct: 143 EEGCLDATLRDLTPALHGALLRAVASIERDLQQASQALATLTEREREVALLIGQGRSNAE 202 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 IA+ + S TV YL S K NR+ Sbjct: 203 IAQVVCKSESTVKHYLSSIMDKTGCENRV 231 >gi|238062419|ref|ZP_04607128.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884230|gb|EEP73058.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 150 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAG 186 + ++ A E ++ ++I +F + R L TERE L L Sbjct: 38 PAELLAGIRVVAAGEGLLAPT-VTRRLIDEFARRPEPARPLPRRLEGVTEREREVLMLIA 96 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ E+AE+L LS+ TV ++G KL +R Q + A G + Sbjct: 97 RGLSNAELAEQLSLSLPTVKTHVGRLLTKLAVRDRAQLVIVAYETGLV 144 >gi|324111848|gb|EGC05828.1| luxR family protein regulatory protein [Escherichia fergusonii B253] Length = 200 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A + + ++ D+L + + S + L+ R+ L + G +++E Sbjct: 102 PRDSGAETFALALNSVVMGMMFLPGDWLSMPETESRDIKTLSVRQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195 >gi|320086683|emb|CBY96454.1| Nitrate/nitrite response regulator protein homolog [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 215 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153 L + I V +I EV++EA Sbjct: 71 LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130 Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++L ++ + LTERE L G ++++IA L +S TV ++ Sbjct: 131 SDRVNEYLRERERFGAQEDPFRILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190 Query: 211 SATVKLDAVNRIQAIAK 227 + L+ +R+ A Sbjct: 191 NLLRNLNVRSRVAATIL 207 >gi|294630991|ref|ZP_06709551.1| two-component system response regulator [Streptomyces sp. e14] gi|292834324|gb|EFF92673.1| two-component system response regulator [Streptomyces sp. e14] Length = 244 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 126 IRGGARGYVTKTITGADLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 185 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 186 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 244 >gi|160938544|ref|ZP_02085898.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC BAA-613] gi|158438531|gb|EDP16289.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC BAA-613] Length = 211 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + K ++ A +LT RE ++L G + EIA L L+ TV + KL Sbjct: 133 MRRQMAPGKIKADMAGDLTPRERDIMRLVARGMDNREIAGALFLAEGTVRNNISRLLEKL 192 Query: 217 DAVNRIQAIAKAIRFGY 233 +R Q A++ Sbjct: 193 KLKDRTQLAVFAVKHNL 209 >gi|116625514|ref|YP_827670.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228676|gb|ABJ87385.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 191 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE LQ+ +G T++EIA L LSV+TV+A+ G KL+ + + + A+ Sbjct: 126 PIDLLSSREREVLQMLAEGKTNKEIAVVLNLSVYTVDAHRGRIMEKLNLHSINELVRFAV 185 Query: 230 RFGYI 234 R G + Sbjct: 186 RNGLV 190 >gi|121605575|ref|YP_982904.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120594544|gb|ABM37983.1| transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 262 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 17/131 (12%) Query: 114 PFAGIAFPVRLGFHKNG-----YVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK 166 + + + G YV+ + + + I + +L ++ Sbjct: 124 LRNMRSVLIHGMRDERGQYECLYVLLSVHEIPAESASGAIKVLMPFIDSALRQVAQLPQQ 183 Query: 167 RSSAARN----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + A++ L+ERE + G T+ EI L +S TV ++ KL Sbjct: 184 QKPFAKSPRVVQEEIFGLSEREIQIMDWVAMGKTNSEIGSILNISGFTVKNHMQRIFQKL 243 Query: 217 DAVNRIQAIAK 227 + NR QA++K Sbjct: 244 NVFNRAQAVSK 254 >gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase [Acinetobacter calcoaceticus PHEA-2] Length = 319 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVA 309 >gi|282801728|gb|ADB02831.1| AzicR2 [Kibdelosporangium sp. MJ126-NF4] Length = 214 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G + L + R+SAA L++RE L L Sbjct: 97 AGATGYLLKDAPRDELLRAVRATARGEAVLAPSAAALLMSRVRASAAGPLSQRELEVLHL 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ E A +L L+ T+ ++L + KL +R A+ G + Sbjct: 157 VAEGATNREAAARLFLTEATIKSHLLNIYGKLGVSDRAAAVTAGFNRGLL 206 >gi|315498474|ref|YP_004087278.1| two component transcriptional regulator, luxr family [Asticcacaulis excentricus CB 48] gi|315416486|gb|ADU13127.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 240 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 20/116 (17%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----------LTER 177 G V F + L + I+D LE + A LT Sbjct: 130 FGAVGFIGKDQPLPR---------MQEAISDALEGRISDTPPADPEVDTVAAKVADLTPT 180 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + L G +++IA L +S TV A++ + KLD NR QA+ A G Sbjct: 181 QLRVLLGVLAGRLNKQIAYDLSISEATVKAHMTAIMRKLDVQNRTQAVLAARALGI 236 >gi|226304850|ref|YP_002764808.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183965|dbj|BAH32069.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 219 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++ + L+ RE L L G + IA +L L+ TV ++ KL +R Sbjct: 146 EVRRRSEPSGPTLSAREREVLGLIAQGASIPTIASQLFLAPSTVKTHVQRLYEKLGVNDR 205 Query: 222 IQAIAKAIRFGYI 234 A+A A+R G + Sbjct: 206 GAAVAAAMRQGLL 218 >gi|126653823|ref|ZP_01725686.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905] gi|126589660|gb|EAZ83797.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905] Length = 229 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 11/232 (4%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALD-FPRRQQLICELHNYDLDSGDIPN--I 67 S+L + R +QN ++ + LD FP + + + I Sbjct: 1 MSNLYTIQKRFDTVQNYSNHEELLIHILQVYLDSFPIKDAYLLRYSPIGFVAEGIIFLNE 60 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS-----VRLEGGLLPFAGIAFPV 122 ++ + S PII+ +I E+ +G ++ A + P+ Sbjct: 61 EGGSHIGEIREEIRSF--PIIYSAIVEKKAKFCTGMDYLKNISIKYSISSQNNAFLIVPI 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 +G + GY+ T + E +++ + + L + + L++RE + Sbjct: 119 FIGHYVFGYICSTQIDMDKITEKLLD-DFTAFGNVIGQLIIQARDHKKGSILSKRELEVM 177 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G +++E+A+ + LS T+N Y+ SA KL A NR AI+ + G I Sbjct: 178 RQIALGDSTKEMADFMNLSELTINQYVKSAIKKLQAKNRTHAISILYQEGVI 229 >gi|21224169|ref|NP_629948.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|3036890|emb|CAA18523.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 229 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L L +G T+ +IA +L +S TV ++ + K +R QA+ A Sbjct: 162 DGLTTRETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGK 221 Query: 232 GYI 234 G + Sbjct: 222 GLV 224 >gi|158313806|ref|YP_001506314.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158109211|gb|ABW11408.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 216 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 35/83 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A + L A+ L+ RE L L +G T+ +IA +L LS TV Y Sbjct: 132 LDPAVTARVLARLREGTDVGRASAVLSTREREILVLIAEGLTNRQIAGRLHLSEKTVKNY 191 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + S KL +R QA A R Sbjct: 192 VSSILDKLGLSSRTQAAVYAARR 214 >gi|126174167|ref|YP_001050316.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|125997372|gb|ABN61447.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] Length = 214 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + +IAE L + + TV + + KL+A N + + R G Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214 >gi|124266090|ref|YP_001020094.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124258865|gb|ABM93859.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 933 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 72/225 (32%), Gaps = 12/225 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S + +H + ++ + + A G + + + Sbjct: 718 DSRDDAPHWIH-LAEDVEGSGYGWIRLAIARHDHADAAQRIARERARQT-GRVYRDIKLS 775 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK--N 129 + L G + +++ + G+ L G+ +R + Sbjct: 776 VLETLLQQ-RMGARNAAHRCLRKALQLGRRGRYVRCLLDEG---DGVIELLREAYQNLLR 831 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+ + I + L ++ L+ERE L+ DG Sbjct: 832 GHEPGGGTGTDPDRDYIELL----LEASGTDLGRQAAGNALTEALSEREKEMLRFLLDGT 887 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EIA +L +S +TV +L + KL NR+QAI A I Sbjct: 888 TNREIAGRLFVSENTVKFHLKNIYSKLGVGNRLQAINTARALRLI 932 >gi|312621234|ref|YP_004022847.1| LuxR family transcriptional regulator [Caldicellulosiruptor kronotskyensis 2002] gi|312201701|gb|ADQ45028.1| transcriptional regulator, LuxR family [Caldicellulosiruptor kronotskyensis 2002] Length = 74 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE ++L GY+++EI+ L +S TV Y+ +KL+A +R++ A Sbjct: 10 ELTKREKEIIKLIAKGYSNKEISSFLNISEGTVKTYIKIIMLKLNARSRVEIAAY 64 >gi|296169094|ref|ZP_06850753.1| LuxR family DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896214|gb|EFG75876.1| LuxR family DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 223 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + L +R LTE+E + L L +G T+ +IA ++ L+ TV Y Sbjct: 125 LDNRAAAALMAKLRGAAEREDPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNY 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + KL R QA A + Sbjct: 185 VSRLLAKLGMERRTQAAVFASKL 207 >gi|253773935|ref|YP_003036766.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161147|ref|YP_003044255.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B str. REL606] gi|300928412|ref|ZP_07143945.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1] gi|242376846|emb|CAQ31561.1| CsgD transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253324979|gb|ACT29581.1| transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973048|gb|ACT38719.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli B str. REL606] gi|253977262|gb|ACT42932.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli BL21(DE3)] gi|300463575|gb|EFK27068.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1] gi|323962640|gb|EGB58218.1| luxR family protein regulatory protein [Escherichia coli H489] gi|323973370|gb|EGB68559.1| luxR family protein regulatory protein [Escherichia coli TA007] Length = 216 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|15597787|ref|NP_251281.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|218891329|ref|YP_002440196.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235577|ref|ZP_04928900.1| hypothetical protein PACG_01504 [Pseudomonas aeruginosa C3719] gi|254241024|ref|ZP_04934346.1| hypothetical protein PA2G_01705 [Pseudomonas aeruginosa 2192] gi|9948655|gb|AAG05979.1|AE004688_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|66957912|gb|AAY59074.1| transcriptional regulatory protein [Pseudomonas sp. M18] gi|126167508|gb|EAZ53019.1| hypothetical protein PACG_01504 [Pseudomonas aeruginosa C3719] gi|126194402|gb|EAZ58465.1| hypothetical protein PA2G_01705 [Pseudomonas aeruginosa 2192] gi|218771555|emb|CAW27323.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 268 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 + N+A + + + D F Sbjct: 32 QTLGQFAPVDNWAALIFSDSSPLILSFMEEEREEVEPDPLISRYITGLYL-QDPFYQVSR 90 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 + ++ + + + + + + V L + + Sbjct: 91 NCRRGGLFHLADIVSEDFETTEYYNTYFAHYVVTDEVQYNVPLDGERTLCLSL-GSESRF 149 Query: 142 ANEVIIEAHGACYQV---------ITDFLELFKKRSSAAR-----------NLTERETSC 181 E I V D + K +AA LT RE+ Sbjct: 150 GAEQIALFELLRPWVIALMKKRIHFEDAVREEAKPIAAAEVEVQPWRGLISPLTARESDV 209 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++L DGY+++EIA++L LS+ T+ + KL+ + + Sbjct: 210 IRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLNVKSHSE 251 >gi|319644893|ref|ZP_07999126.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2] gi|317392702|gb|EFV73496.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2] Length = 214 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L+ GY ++EIA+KL +SV TV + + KLD ++ + I AI Sbjct: 146 PTSVLTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAI 205 Query: 230 RFGYI 234 + Y+ Sbjct: 206 KNKYL 210 >gi|297516127|ref|ZP_06934513.1| DNA-binding transcriptional regulator CsgD [Escherichia coli OP50] Length = 114 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 54 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 108 >gi|209548992|ref|YP_002280909.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534748|gb|ACI54683.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 206 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G +++ I +L L TV ++ KL NR +A + + Sbjct: 148 GLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQILSKLGVSNRTEAALQWRQH 206 >gi|52081142|ref|YP_079933.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52786522|ref|YP_092351.1| hypothetical protein BLi02787 [Bacillus licheniformis ATCC 14580] gi|52004353|gb|AAU24295.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349024|gb|AAU41658.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 214 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L+ GY ++EIA+KL +SV TV + + KLD ++ + I AI Sbjct: 146 PTSVLTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAI 205 Query: 230 RFGYI 234 + Y+ Sbjct: 206 KNKYL 210 >gi|313497133|gb|ADR58499.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 905 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A +++ + + L+ RE + L+L G ++++I+E+L +S+HTV Sbjct: 818 AACPVQAELLKHLPPVPVASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKT 877 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL R QA+AKA G + Sbjct: 878 HASHINSKLGVERRTQAVAKAKFLGLL 904 >gi|304390336|ref|ZP_07372289.1| possible response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326092|gb|EFL93337.1| possible response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 221 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE L L + T+ +IA +L +S +TV ++ S K DA +R A+A Sbjct: 155 PSDTVLTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGAVAHG 214 Query: 229 IRFGYI 234 IR G I Sbjct: 215 IRQGII 220 >gi|300856053|ref|YP_003781037.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436168|gb|ADK15935.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 224 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL++RE L GY+++EI ++L +S TV Y + K++ +R+ A AI Sbjct: 153 DNLSKREIEVLSKISKGYSNKEIGKQLYISEKTVKNYATNLFKKINVDDRVHAAIVAIEN 212 Query: 232 GY 233 Sbjct: 213 NI 214 >gi|229820935|ref|YP_002882461.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566848|gb|ACQ80699.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 220 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + R LT RE L L G ++ EIA +L ++ TV ++ + KL +R+QA Sbjct: 147 PRTEAELRVLTSREREVLSLIARGLSNAEIAGRLFVTEGTVKGHVSAILAKLGLRDRVQA 206 Query: 225 IAKAIRFGYI 234 + + G + Sbjct: 207 VIFSYECGLV 216 >gi|325066389|ref|ZP_08125062.1| two component LuxR family transcriptional regulator [Actinomyces oris K20] Length = 234 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + L+ERE L L D T+++IA +L +S TV ++ + KL Sbjct: 160 HAQQPPSPLPHGVTLSEREREVLTLVVDAKTNKQIATRLRVSEATVKTHVSAIIAKLGVQ 219 Query: 220 NRIQAIAKAIRFGYI 234 +R+ A A++ + Sbjct: 220 DRVGAAVYALQHNLV 234 >gi|238752983|ref|ZP_04614443.1| Two-component response regulator [Yersinia rohdei ATCC 43380] gi|238708805|gb|EEQ01063.1| Two-component response regulator [Yersinia rohdei ATCC 43380] Length = 210 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 NHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|254467347|ref|ZP_05080758.1| nitrate/nitrite response regulator protein, putative [Rhodobacterales bacterium Y4I] gi|206688255|gb|EDZ48737.1| nitrate/nitrite response regulator protein, putative [Rhodobacterales bacterium Y4I] Length = 204 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V G F + + A +++ FL++ ++ L+ RE + Sbjct: 84 VPRKAMSAGAAGFAPRSSAVDGLLDTCLAVAAGKMVFPFLDVRGLQTDPIEQLSRRERTM 143 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ G T++E++++L +S +TV +L + KL NR QAIA Sbjct: 144 LEALSKGLTNKELSKELEISTNTVKFHLSNLYEKLSVKNRAQAIAF 189 >gi|198275681|ref|ZP_03208212.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135] gi|198271310|gb|EDY95580.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135] Length = 202 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + ++ S +L++RE + G T++EIAEKL +SVHTV + + T KL Sbjct: 119 LMNVANEKESDQDSLSQREKEIVGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIH 178 Query: 220 NRIQAIAKAIRFGYI 234 + AI + Sbjct: 179 SAAGLTIYAIVNKLV 193 >gi|146299747|ref|YP_001194338.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154165|gb|ABQ05019.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 213 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K+ S L+ RE L L Y + EIAEK +S++TVN + + KL+A N Sbjct: 143 EKQVSNLTELSSREKEILVLIAHEYNTAEIAEKTFISLNTVNTHRRNLLSKLNAKNTAGL 202 Query: 225 IAKAIRFGYI 234 + A+ G + Sbjct: 203 VKYAVENGLV 212 >gi|90407707|ref|ZP_01215886.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp. CNPT3] gi|90311176|gb|EAS39282.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp. CNPT3] Length = 211 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 NLT+RE LQ G +++EI+ L +S TV ++ S KL A +R++A Sbjct: 151 NLTKRERQILQEIAKGQSNKEISINLHISEGTVKVHVKSLLKKLQAKSRVEAAI 204 >gi|297197881|ref|ZP_06915278.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146901|gb|EDY61655.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 256 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 5/161 (3%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + P+ + + + S + + GI P V + Sbjct: 88 AGRADRAPVTARRVAGRSWSGSPTARLLDDLLDVDHVLGIPLPQSTTPVTGCLVYRSGRD 147 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + E + +L ++ ++ + LT RET+ L L GD T+ Sbjct: 148 FTDDELRLAEQLQPLLAAVEQQRQLLRRLNAPSEEAADLALTPRETTVLLLLGDALTAVS 207 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I +LG+S TV+ ++ + KL +R+ + A R G + Sbjct: 208 IGRRLGISERTVHKHIANIYRKLGTHDRVSTVLHAQRLGLV 248 >gi|258655128|ref|YP_003204284.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558353|gb|ACV81295.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 982 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 16/188 (8%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + +L P +W++ E + Sbjct: 803 RPRGGQLGPEGRGWVARARAE--------YSRLIGEPDPDLWRAAVTEFAYGYRYE---E 851 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KK 166 +A ++G + S L A ++ A + L Sbjct: 852 ARSRWRLAEALA----ARGDRSGATVEASTALRAAQDMGARPLAAALIDLGRRARLDLPG 907 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S+ LT RE L+L G T+ +I E+L +S TV+ ++ + KL R +A+A Sbjct: 908 STSSGGVLTGREEEVLRLVAAGLTNRQIGERLYISGKTVSVHISNVLGKLGVGGRAEAVA 967 Query: 227 KAIRFGYI 234 A R G + Sbjct: 968 VAHRRGLL 975 >gi|229083091|ref|ZP_04215495.1| Two-component protein Kinase [Bacillus cereus Rock4-2] gi|228700249|gb|EEL52831.1| Two-component protein Kinase [Bacillus cereus Rock4-2] Length = 592 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + +AA LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPQSKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ A+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQMALEIGII 591 >gi|269925757|ref|YP_003322380.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789417|gb|ACZ41558.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 1648 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 167 RSSAARNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RSS+ + LT+RE LQL +G ++++++ +LG+S HTV +L + KL +R Q + Sbjct: 1578 RSSSLQMLTDREQEILQLLVNGVTSTKDLSRQLGVSEHTVKYHLRNILSKLHLQSRAQVV 1637 Query: 226 AKAIRFGY 233 A A++ G Sbjct: 1638 AWAVQHGL 1645 >gi|167646647|ref|YP_001684310.1| two component LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167349077|gb|ABZ71812.1| two component transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 222 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE +QL + +++ IA L +SV TV ++ G+ KL A + + AIR Sbjct: 157 AETLTTRELLIVQLLAESRSNKVIASMLDISVKTVESHRGNIMRKLGAHSLADIVRYAIR 216 Query: 231 FGYI 234 I Sbjct: 217 NKLI 220 >gi|86157284|ref|YP_464069.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773795|gb|ABC80632.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 211 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G ++ IA +LG+S HT ++ + KL A +R +AI +A R G Sbjct: 148 PLTPREREVLALVAEGLGNKGIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 207 Query: 233 YI 234 + Sbjct: 208 LV 209 >gi|311894358|dbj|BAJ26766.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 226 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + T+ + + + +++ GA +++ + LT+RE L L G+G Sbjct: 114 GTDLVTAIRTVASGQSMLDP-GAATRLMARMRGESPAPAPEFPQLTDREREILALIGEGL 172 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T+ +I E++ L+ TV ++ KL R+QA A + Sbjct: 173 TNRQIGERVYLAEKTVKNHISRLLAKLGVERRVQAAVIATQ 213 >gi|294498256|ref|YP_003561956.1| two-component response regulator DesR [Bacillus megaterium QM B1551] gi|295703606|ref|YP_003596681.1| two-component response regulator DesR [Bacillus megaterium DSM 319] gi|294348193|gb|ADE68522.1| two-component response regulator DesR [Bacillus megaterium QM B1551] gi|294801265|gb|ADF38331.1| two-component response regulator DesR [Bacillus megaterium DSM 319] Length = 200 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LAN + G +L+ + +S LT RE L L Sbjct: 94 AGVSGYLLKDSPSEELANSIRSVMAGRRLYAPELVDDLYSESTSP---LTAREKEVLALV 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA++L + TV Y+ + KL+ NRI+AI + G+ Sbjct: 151 ADGKNTKEIADELSIKTGTVRNYISTILDKLEVKNRIEAITRFKEKGW 198 >gi|282863211|ref|ZP_06272271.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562193|gb|EFB67735.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 216 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A Q+ ++ + + LTERE++ L+L G ++ EIA +L + V TV ++ Sbjct: 130 AAVRQLAAEYGTSEARAAMDRAALTERESAVLRLMARGLSNAEIAAELVVGVQTVKTHVS 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL A +R QA+ A G++ Sbjct: 190 AVLAKLGARDRTQAVIAAYESGFV 213 >gi|270263814|ref|ZP_06192082.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042007|gb|EFA15103.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 252 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 19/221 (8%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L ++ N +Y + + + + D+ + D F Sbjct: 23 SLLAWMEAFFAFDNAIVYAFERGRA----PRCLLKTEQENSDAVNQIYQRGAYLQDPFYQ 78 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF--AGIAFPVRLGFHKNGYVIFTS 136 N G ++ Q AG+ P+ + Sbjct: 79 MLNGGGGGEVFSLRQLAPCGFYHTDYYRNFYRKTGWHDEAGVLLPLTPERGLGVFFGSAR 138 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQ 183 + + + + E A + + + ++ LT RE + Sbjct: 139 QTVGMRYPQLAELRSALTLLKSIARLHGEVVAAPVSPDTAEDKTRQVRYLLTPREREIVD 198 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G S++IA++L +S+ TV + + KLD ++ + Sbjct: 199 LILSGCGSQQIADRLFISLGTVKNHRKNIYGKLDIGSQAEL 239 >gi|238763420|ref|ZP_04624383.1| Two-component response regulator [Yersinia kristensenii ATCC 33638] gi|238763501|ref|ZP_04624463.1| Two-component response regulator [Yersinia kristensenii ATCC 33638] gi|238698283|gb|EEP91038.1| Two-component response regulator [Yersinia kristensenii ATCC 33638] gi|238698364|gb|EEP91118.1| Two-component response regulator [Yersinia kristensenii ATCC 33638] Length = 210 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|228901714|ref|ZP_04065887.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222] gi|228857943|gb|EEN02430.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222] Length = 592 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|218672704|ref|ZP_03522373.1| probable two-component response regulator protein [Rhizobium etli GR56] Length = 207 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +S LT RE + L G +++ I +L L TV ++ KL NR +A Sbjct: 141 GAASDKNGLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVSNRTEAA 200 Query: 226 AKAIRF 231 + Sbjct: 201 LQWRER 206 >gi|148379355|ref|YP_001253896.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A str. ATCC 3502] gi|153934107|ref|YP_001383731.1| LuxR family DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937750|ref|YP_001387280.1| LuxR family DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288839|emb|CAL82923.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152930151|gb|ABS35651.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A str. ATCC 19397] gi|152933664|gb|ABS39163.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A str. Hall] gi|322805695|emb|CBZ03260.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 217 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL S NLTERE + ++ +G +++EIAEK+ LS T+ + + KLD +R Sbjct: 144 ELNDDDISLRYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDR 203 Query: 222 IQAIAKAIRFGYI 234 Q A + + Sbjct: 204 TQIAIFAFKNNIV 216 >gi|330467467|ref|YP_004405210.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810438|gb|AEB44610.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 226 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G G ++EI +L LS T ++ A KL A +R Q + A + G Sbjct: 162 LTDREREVLALVGRGLNNDEIGGELFLSPATARTHVSRAMAKLGARDRAQLVVIAYQTGL 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|311896469|dbj|BAJ28877.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 170 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + L E ++ + A LT RE L+L G Sbjct: 59 RPAEVVQAVRLAATGETLLFPAAIRRLAAARAGHAADGGAVARAGLTGREGEVLRLMARG 118 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EI +L L V TV ++ + KL A +R QA+ A G++ Sbjct: 119 LSNAEIGAQLHLGVQTVKTHVSAVLGKLGARDRTQAVIAAYESGFV 164 >gi|296269744|ref|YP_003652376.1| LuxR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092531|gb|ADG88483.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 228 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 6/113 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + ++ + + ++++ E + +++ L+ RE Sbjct: 118 LNRHVLEDALIRVARSETPMPSQIVAELFDSADRMLRR------GTHPRYVELSAREREA 171 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL DG +++EIA++L +SVH +G+ +KL+ NR QA A+R G + Sbjct: 172 LQLLADGLSNKEIAQRLYISVHGAKRLVGNILLKLNCPNRTQAAVIAMRHGLV 224 >gi|285018517|ref|YP_003376228.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283473735|emb|CBA16238.1| probable two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 236 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 40/83 (48%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++++ +SA LT RE +QL +G ++++IA +L +SV T+ + Sbjct: 129 ALSQSLVSEYRCPPGDAASAYTLLTSREREVVQLLSEGLSTKDIAARLHISVKTIGTHRE 188 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 +KL + Q AIR G Sbjct: 189 HIMLKLGMQSIAQLTRYAIREGL 211 >gi|238920403|ref|YP_002933918.1| csgAB operon transcriptional regulatory protein [Edwardsiella ictaluri 93-146] gi|238869972|gb|ACR69683.1| probable csgAB operon transcriptional regulatory protein [Edwardsiella ictaluri 93-146] Length = 206 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ E + LT RE L+ G ++ +I+ L +S +TV Sbjct: 120 ALIRRLRTLLMAAQEEGPGYMTPTPRLTLRELEVLKAMQQGASNLDISRILYISKNTVRT 179 Query: 208 YLGSATVKLDAVNRIQAIAKA 228 ++ + K+ NRIQA+ A Sbjct: 180 HVYNIFKKISVKNRIQAVIWA 200 >gi|229145112|ref|ZP_04273504.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|228638310|gb|EEK94748.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] Length = 304 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-----IEAHGACYQVITDFLE--LFKKRSSAAR-N 173 +R G S L + ++ + H +++ + E LF+ RS Sbjct: 183 IRNGADGYVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGIEYG 242 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L G + IA L LS TV Y + KL NR +A+ KA G Sbjct: 243 LSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 302 Query: 234 I 234 + Sbjct: 303 L 303 >gi|212710861|ref|ZP_03318989.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM 30120] gi|212686558|gb|EEB46086.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM 30120] Length = 206 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 +E H + + L + LT RE L G ++EI++ L +S TV Sbjct: 121 MEGHHVFSEKVYQHLITRHQTKDPLSTLTRRECEILHEMAAGLKNKEISQLLFISEETVK 180 Query: 207 AYLGSATVKLDAVNRIQA 224 ++ + KL +R++A Sbjct: 181 VHIRNVLKKLRVRSRLEA 198 >gi|167619378|ref|ZP_02388009.1| DNA-binding response regulator NarL [Burkholderia thailandensis Bt4] Length = 74 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 5 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 64 Query: 232 GY 233 G Sbjct: 65 GL 66 >gi|289663521|ref|ZP_06485102.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 235 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + A + H V + N+ + Sbjct: 86 AAGDGHEAGWLMPPRPVDIREARVPIHALGTTHGMLCVAWNESRPAPGNDDVQALQAFAL 145 Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E ++R L++RE L L G T+ +A +LG++ TV Sbjct: 146 LLPAMVAEPAKPIATRRRKPVQDDRLGALSKRERQVLSLLPRGLTNATLAAELGIAPGTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL+ +R QA A++ G Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|290962712|ref|YP_003493894.1| two component response regulator [Streptomyces scabiei 87.22] gi|260652238|emb|CBG75371.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 216 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 19/127 (14%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFLELFKKRSSAA 171 + L G+++ A ++IEA + + V L L ++R+SAA Sbjct: 89 LTIALRNGACGFLL-----KDAAPALLIEAVRSAARGDALVSPGVTVRLLRLLEERTSAA 143 Query: 172 R------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE +L G T++EI+++L LS+ TV +LG KL NR++ Sbjct: 144 AGGVPGSALSARELEVARLVAVGRTNQEISDELCLSLSTVKTHLGHIHHKLGVRNRVEVA 203 Query: 226 AKAIRFG 232 A A G Sbjct: 204 AWAWANG 210 >gi|290958798|ref|YP_003489980.1| two component response regulator [Streptomyces scabiei 87.22] gi|260648324|emb|CBG71435.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 256 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L +S HTV ++G+ KL +R+QA+ A G Sbjct: 167 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRVQAVICAYETGL 226 Query: 234 I 234 I Sbjct: 227 I 227 >gi|297565170|ref|YP_003684142.1| LuxR family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849619|gb|ADH62634.1| transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 768 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 9/223 (4%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-GDD 75 + LH + +AR F + A + + N L + Sbjct: 540 IGSVLHRRGDISQARTFFEEALALARPRHDKWLMSVVTRNLGLALASEDPAQALALLQES 599 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + G + + ++ +++ + + +L G F AF ++ G +V Sbjct: 600 LALAYEIGHRSLTVRGLEALAGLQAQAEAAAKLLGASEVFRD-AFGLKRGSSSEAWVAAV 658 Query: 136 SEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 E L A G + L + LT+RE + G Sbjct: 659 RERLGPAAFEAAWNQGQAMTPGEAVALALGRGAPLPIAQVQRPGGLTDREIQVVWEIASG 718 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+ +IAEKL +S TV+A++ + KL R Q A R Sbjct: 719 LTNRQIAEKLEISQRTVDAHVQNILNKLGVEKRTQIAVWASRH 761 >gi|325269083|ref|ZP_08135704.1| transcriptional regulator [Prevotella multiformis DSM 16608] gi|324988704|gb|EGC20666.1| transcriptional regulator [Prevotella multiformis DSM 16608] Length = 217 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++EIAEKL +S+ TV + + KL + A+ GY Sbjct: 152 LSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGY 211 Query: 234 I 234 I Sbjct: 212 I 212 >gi|300949995|ref|ZP_07163946.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300955336|ref|ZP_07167717.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|331644390|ref|ZP_08345519.1| transcriptional regulatory protein UhpA [Escherichia coli H736] gi|300317756|gb|EFJ67540.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300450640|gb|EFK14260.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|331036684|gb|EGI08910.1| transcriptional regulatory protein UhpA [Escherichia coli H736] Length = 217 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 95 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 151 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 152 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 211 Query: 227 K 227 + Sbjct: 212 R 212 >gi|302520045|ref|ZP_07272387.1| response regulatory protein [Streptomyces sp. SPB78] gi|318061142|ref|ZP_07979863.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079227|ref|ZP_07986559.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|302428940|gb|EFL00756.1| response regulatory protein [Streptomyces sp. SPB78] Length = 220 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 36/110 (32%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + + LT RE L Sbjct: 110 NAGATGYLLKAERPEELFAAIHAAAQGRTALSPPVAHRVLAHLRAPRPELTPRERDILAQ 169 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A+A A + Sbjct: 170 LSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 219 >gi|291298070|ref|YP_003509348.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567290|gb|ADD40255.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 44/131 (33%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 V AG + + H + + A L Sbjct: 87 FDVDAYVYAGLRAGASGFLLKDSHAATLIAAVHTVASGNAVLSPWATSRLVSTFAPLLPE 146 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT RE L L G G ++ EIA +LG+ TV ++L S KL +R+ Sbjct: 147 PLATPPRLKALTARERDVLSLTGRGLSNNEIATELGIGYETVKSHLRSVMTKLRLRDRVH 206 Query: 224 AIAKAIRFGYI 234 A+ A G + Sbjct: 207 AVIVAYETGLL 217 >gi|228469458|ref|ZP_04054466.1| transcriptional regulator, LuxR family domain protein [Porphyromonas uenonis 60-3] gi|228309033|gb|EEK17676.1| transcriptional regulator, LuxR family domain protein [Porphyromonas uenonis 60-3] Length = 201 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S L++RE + G T++EIA+ L LS HTV + + KLD + Sbjct: 121 ELIESDESKQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSP 180 Query: 222 IQAIAKAIRFGYI 234 A+ I Sbjct: 181 SGLTIYALMNNLI 193 >gi|189467258|ref|ZP_03016043.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM 17393] gi|189435522|gb|EDV04507.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM 17393] Length = 250 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 8/132 (6%) Query: 106 VRLEGGLLPFAGIA---FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 +R+ + I F + + + ++ + + + LE Sbjct: 124 MRMRDHSGRYVHILHRMFYIASHSNGSVWLSLCLYNFSMDTSL---SCTILNSADGQTLE 180 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K+ L+ERE LQL G S++IA+ L +S++TVN + + KL N I Sbjct: 181 LEKQN--CNDLLSEREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEKLQVNNSI 238 Query: 223 QAIAKAIRFGYI 234 +A A + Sbjct: 239 EACRIAKELHLL 250 >gi|323180293|gb|EFZ65845.1| transcriptional regulator, LuxR family protein [Escherichia coli 1180] Length = 123 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS T+ + + KLD + I+ I Sbjct: 54 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTIETHRLNIMKKLDVYSGIELIK 113 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 114 TALRMG-VC 121 >gi|311280576|ref|YP_003942807.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308749771|gb|ADO49523.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 210 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 4/114 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK---KRSSAAR-NLTERETS 180 NG+V + + V + G + L + +R S L+ RE Sbjct: 97 RAGANGFVSKRKDQNDIYKAVEMLLSGYSFFPADTLSALSRSHIRRGSKTELPLSNREVM 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T++EIA+KL LS T++A+ + KL ++ I A + Sbjct: 157 VLRYLANGLTNKEIADKLLLSNKTISAHKSNIFSKLGVRTIVELIDYAKAHELL 210 >gi|296137313|ref|YP_003644555.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] gi|294341618|emb|CAZ90035.1| putative two-component system response regulator; CheY domain [Thiomonas sp. 3As] gi|295797435|gb|ADG32225.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] Length = 223 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 16/131 (12%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA 171 FP L GY++ + L ++ G +++ F L + S+ + Sbjct: 93 LFPA-LQAGAFGYLLKDRPKIELRAQLRRIQDGEPPLSPSIARRMVQHFTHLHRTMSAPS 151 Query: 172 R--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE+ LQL G GYT EIA +LGLS HTV Y+ KL+ +R + Sbjct: 152 SNLPQEEHIALTERESEVLQLVGKGYTLPEIAVQLGLSRHTVADYVKQIYRKLNISSRAE 211 Query: 224 AIAKAIRFGYI 234 A +A+R G + Sbjct: 212 AALEAVRRGLV 222 >gi|238760517|ref|ZP_04621652.1| Two-component response regulator [Yersinia aldovae ATCC 35236] gi|238701269|gb|EEP93851.1| Two-component response regulator [Yersinia aldovae ATCC 35236] Length = 210 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|228997307|ref|ZP_04156929.1| Response regulator receiver [Bacillus mycoides Rock3-17] gi|229004932|ref|ZP_04162659.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228756280|gb|EEM05598.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228762399|gb|EEM11324.1| Response regulator receiver [Bacillus mycoides Rock3-17] Length = 578 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 29/60 (48%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L +G +EIA KL LS TV Y S +KL R +A+ KA+ Sbjct: 514 PPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQVSGRGEAVKKAL 573 >gi|226349997|ref|YP_002777110.1| two-component response regulator [Rhodococcus opacus B4] gi|226245909|dbj|BAH47173.1| two-component response regulator [Rhodococcus opacus B4] Length = 209 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ RE ++L G T+ EIAE+L +S TV ++ S KL R + A Sbjct: 146 DSLSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDA 205 Query: 232 GYI 234 G + Sbjct: 206 GLL 208 >gi|213963027|ref|ZP_03391286.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] gi|213954368|gb|EEB65691.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] Length = 235 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L LA G++S+EIAEKL +S +TVN + + K +A + I+AI A + G Sbjct: 175 LTPREKEILTLASQGFSSKEIAEKLFISTYTVNRHRQNIREKFNAESLIEAIDIARKKGV 234 Query: 234 I 234 + Sbjct: 235 L 235 >gi|220908626|ref|YP_002483937.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865237|gb|ACL45576.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 211 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L L G ++ EIA+ L +S TV ++ + +L +R QA Sbjct: 150 ELTERELEILDLIATGASNREIAQTLYISEKTVKNHVTNILSRLQLRDRTQAAIL 204 >gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 219 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ET +QL G ++ ++AEKL +S T+ +++ + K + NR + A Sbjct: 154 PSNVELTPTETKVVQLVAQGLSNRDVAEKLSVSQRTIESHVSNMLNKTNLHNRTELARWA 213 Query: 229 IRF 231 I Sbjct: 214 IEN 216 >gi|170780573|ref|YP_001708905.1| LuxR family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155141|emb|CAQ00241.1| putative LuxR-family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 540 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 1/105 (0%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGD 187 + +L + + H +V+ + ++ LT+RE + D Sbjct: 428 FAVFPAAASHALLDRALARDQHPDVREVLEGVRAGQVRVEAAPVEPLTDRERIIVACLAD 487 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G T +IA +L +S +TV +++ +A KLDA +R +A+ +A G Sbjct: 488 GLTVTQIAGRLFISPNTVKSHIRTAYRKLDARSRSEAVERARALG 532 >gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 219 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ET +QL G ++ ++AEKL +S T+ +++ + K + NR + A Sbjct: 154 PSNVELTPTETKVVQLVAQGLSNRDVAEKLSVSQRTIESHVSNMLNKTNLHNRTELARWA 213 Query: 229 IRF 231 I Sbjct: 214 IEN 216 >gi|89053110|ref|YP_508561.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88862659|gb|ABD53536.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 203 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 14/186 (7%) Query: 49 QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108 + ++ Y ++ + D L S W I ++ Sbjct: 32 SPLIMVNTYPDVWQEVYTSKLYGLRDPTLAWGLSHTGTRRWSQIGLPDPFG-----ILQE 86 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 G+ + + ++ + + +++ S Sbjct: 87 SADYGLRYGMIASI-GPMSSRTVAGASRADREFTDDEMELVYRIVHRMH--------DLS 137 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L++ + L+ +G A KLG+S A L SA KL A +A+ +A Sbjct: 138 EPPARLSKAQADALKCIAEGDRHAAAAAKLGISESAFKARLTSARQKLMARTTAEAVQRA 197 Query: 229 IRFGYI 234 +G I Sbjct: 198 KEYGLI 203 >gi|154244941|ref|YP_001415899.1| two component LuxR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159026|gb|ABS66242.1| two component transcriptional regulator, LuxR family [Xanthobacter autotrophicus Py2] Length = 210 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + A +LT R+ L+L G +++EI L LS TV ++ S L Sbjct: 134 AAPVATSEAAEEPAPHLTTRQLEVLKLLSRGLSNKEIGNTLDLSEKTVKVHITSIFRSLH 193 Query: 218 AVNRIQAIAKAIRFGYI 234 +NR QA + A + I Sbjct: 194 VINRTQAASAARQGNLI 210 >gi|124266442|ref|YP_001020446.1| response regulator [Methylibium petroleiphilum PM1] gi|124259217|gb|ABM94211.1| response regulator [Methylibium petroleiphilum PM1] Length = 245 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 12/112 (10%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 +G + S + A A V + LT RET L Sbjct: 146 HFRLGDSGSMALDSAHAPGDFQP---ARPAAPAVYAE---------PDHERLTPRETEVL 193 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T +EIA +G+ TVN ++ + KL+ +R +A A + G + Sbjct: 194 TYLSKGFTIKEIAGLMGIKWFTVNDHIKAIYRKLNVSSRAEAAVLASKQGLV 245 >gi|317122922|ref|YP_004102925.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592902|gb|ADU52198.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 259 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R LT R+ L+L +G ++ EIA +L LS TV + +L +R+Q Sbjct: 174 RDPRLDGPEPLTARQREVLELLAEGLSNREIAARLHLSEGTVKNVVSEIYARLQVRDRVQ 233 Query: 224 AIAKAI 229 A+ +A Sbjct: 234 AVLRAR 239 >gi|308067670|ref|YP_003869275.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] gi|305856949|gb|ADM68737.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] Length = 199 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA+ + G EL + LTERE + L L Sbjct: 94 AGTHGYLLKDSPSEELASSIRSIMAGRRIYA----PELVDDAYAEVNPLTEREKTVLALI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L L+ TV Y+ KL NRI+AI + G+ Sbjct: 150 ADGKNTKEIAGELYLTTGTVRNYISVILDKLGVSNRIEAITRFNEKGW 197 >gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 245 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L++ G ++ EI +L LS TV Y+ S K NR + + AI G Sbjct: 183 SLTPREQEVLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHG 242 Query: 233 YI 234 + Sbjct: 243 LV 244 >gi|323156843|gb|EFZ42977.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli EPECa14] Length = 203 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 143 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 197 >gi|227823525|ref|YP_002827498.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] gi|227342527|gb|ACP26745.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 258 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ A LT RE L L G ++ IA++LGLS +TV ++ + K++ NR + Sbjct: 178 ERRGEGARGVLTTREVQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTE 237 Query: 224 AIAKAIRF 231 A ++ R Sbjct: 238 AASRYFRH 245 >gi|157368857|ref|YP_001476846.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157320621|gb|ABV39718.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 252 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 19/221 (8%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L ++ N +Y + + + + + + D+ + D F Sbjct: 23 SLLAWLEGFFAFDNAIVYA----FERGQAPRCLIKTEKENSDAVNQLYQQGAYLQDPFYQ 78 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF--AGIAFPVRLGFHKNGYVIFTS 136 N G + Q AG+ P+ + Sbjct: 79 ALNGGGCGEVLTLRQLAPCGFYHTDYYRNFYRKTGWHDEAGVLLPLTAERGLGVFFGSAR 138 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQ 183 + + + + + + A + + + R + A LT RE + Sbjct: 139 QSVGVRSPQLADLRDALTLLKSVARLHGEVRVAPATPDRVTDSAVQARYLLTPREREIVD 198 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L DG S++IA++L +S+ TV + + KLD ++ + Sbjct: 199 LILDGCGSQQIADRLFISLGTVKNHRKNIYSKLDIGSQAEL 239 >gi|191165770|ref|ZP_03027608.1| transcriptional regulatory protein UhpA [Escherichia coli B7A] gi|193069199|ref|ZP_03050156.1| transcriptional regulatory protein UhpA [Escherichia coli E110019] gi|194428140|ref|ZP_03060684.1| transcriptional regulatory protein UhpA [Escherichia coli B171] gi|256021313|ref|ZP_05435178.1| DNA-binding transcriptional activator UhpA [Shigella sp. D9] gi|300815087|ref|ZP_07095312.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300822443|ref|ZP_07102583.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300903057|ref|ZP_07120998.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300917507|ref|ZP_07134166.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300925486|ref|ZP_07141364.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300932293|ref|ZP_07147564.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|301306297|ref|ZP_07212369.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301325360|ref|ZP_07218863.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|309795786|ref|ZP_07690201.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331679764|ref|ZP_08380434.1| transcriptional regulatory protein UhpA [Escherichia coli H591] gi|332282546|ref|ZP_08394959.1| DNA-binding transcriptional activator UhpA [Shigella sp. D9] gi|190904094|gb|EDV63805.1| transcriptional regulatory protein UhpA [Escherichia coli B7A] gi|192957523|gb|EDV87969.1| transcriptional regulatory protein UhpA [Escherichia coli E110019] gi|194413898|gb|EDX30176.1| transcriptional regulatory protein UhpA [Escherichia coli B171] gi|300404911|gb|EFJ88449.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300415265|gb|EFJ98575.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300418414|gb|EFK01725.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300459955|gb|EFK23448.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300525090|gb|EFK46159.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300531979|gb|EFK53041.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300838479|gb|EFK66239.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300847798|gb|EFK75558.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|308120665|gb|EFO57927.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|324019711|gb|EGB88930.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|331072936|gb|EGI44261.1| transcriptional regulatory protein UhpA [Escherichia coli H591] gi|332104898|gb|EGJ08244.1| DNA-binding transcriptional activator UhpA [Shigella sp. D9] Length = 217 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 95 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 151 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 152 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 211 Query: 227 K 227 + Sbjct: 212 R 212 >gi|325499075|gb|EGC96934.1| HTH-type transcriptional regulator YhjB [Escherichia fergusonii ECD227] Length = 196 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A + + ++ D+L + + S + L+ R+ L + G +++E Sbjct: 98 PRDSGAETFALALNSVVMGMMFLPGDWLSMPETESRDIKTLSVRQREILTMLAAGESNKE 157 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 158 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 191 >gi|311694746|gb|ADP97619.1| HTH-type transcriptional regulator MalT [marine bacterium HP15] Length = 930 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L L G+ ++EIA K+ ++ TV A++ + KL R +A+A+A Sbjct: 866 EPLSQRELEVLALIHAGHANKEIAAKMDVAPATVKAHIRNLYGKLGVGRRTEALARAREL 925 Query: 232 GYI 234 G + Sbjct: 926 GLL 928 >gi|282877369|ref|ZP_06286192.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC 35310] gi|281300421|gb|EFA92767.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC 35310] Length = 203 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L GY ++EIA++L + + TV + + KL + A+ GY Sbjct: 138 LSDREIEVLSLIVQGYINKEIADQLNIGMTTVITHRKNIMDKLGVKSVSALTIYAVMHGY 197 Query: 234 I 234 + Sbjct: 198 V 198 >gi|261253170|ref|ZP_05945743.1| transcriptional regulator LuxR family [Vibrio orientalis CIP 102891] gi|260936561|gb|EEX92550.1| transcriptional regulator LuxR family [Vibrio orientalis CIP 102891] Length = 212 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L +G +S++IA L +S TV + + KLD + + A+ G Sbjct: 150 PLSRREEAVLKLVAEGNSSKKIASLLDISYRTVETHRQNIKHKLDLHSTAELAKYAVEQG 209 Query: 233 YI 234 + Sbjct: 210 IV 211 >gi|255642661|gb|ACU21562.1| AhyR/asaR [Aeromonas hydrophila] Length = 88 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L+ RE + A +G +IA+ LG++ TV +L + KL A ++ QAI+ A Sbjct: 7 SPHDALSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWA 66 Query: 229 IRFGYI 234 ++ G + Sbjct: 67 LKQGMV 72 >gi|196232621|ref|ZP_03131473.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223383|gb|EDY17901.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 220 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 3/102 (2%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTS 191 E L+ A ++ + + L RS + L++RE +L G + Sbjct: 107 APEELVKAVRKVMAGGHYVSAALGEKLAADLGRSRNRAHHETLSDREYQVFRLMLGGKSL 166 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +E A +L +S TV+ Y KL N I+ A+ G Sbjct: 167 KETAAELSVSPKTVSTYRTRIFEKLRVKNDIELARYAMEHGL 208 >gi|123442878|ref|YP_001006854.1| putative two-component response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161274|ref|YP_004297851.1| putative two-component response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089839|emb|CAL12695.1| putative two-component response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|325665504|gb|ADZ42148.1| putative two-component response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864132|emb|CBX74201.1| fimbriae Z protein [Yersinia enterocolitica W22703] Length = 210 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|28898681|ref|NP_798286.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153839650|ref|ZP_01992317.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|153841882|ref|ZP_01993448.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|260364886|ref|ZP_05777457.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|260879713|ref|ZP_05892068.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|260898812|ref|ZP_05907253.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|260900783|ref|ZP_05909178.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|28806899|dbj|BAC60170.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149745434|gb|EDM56685.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|149746824|gb|EDM57812.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|308086611|gb|EFO36306.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308093313|gb|EFO43008.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308106843|gb|EFO44383.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|308111747|gb|EFO49287.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|328474754|gb|EGF45559.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 212 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G +S++IA L +S TV + + KLD + + A G Sbjct: 150 PLSRREEAVLRLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209 Query: 233 Y 233 Sbjct: 210 L 210 >gi|284042088|ref|YP_003392428.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946309|gb|ADB49053.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 196 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + V + D + R + L+ERE L L +G T+ +I L Sbjct: 102 IDRTWPVARLLTALRAAGLDDTAPIH--RPPSPTRLSERERQVLTLVSEGSTNAQIGRSL 159 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS HT+ + S KL A NR +A+ +A G + Sbjct: 160 CLSPHTIKQHTSSVYRKLHARNRAEAVTRARELGLL 195 >gi|282900664|ref|ZP_06308606.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194464|gb|EFA69419.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L S +++ RE L+L G ++ EI KL LS TV Y+ S K + NR Sbjct: 159 LNHPDSHILMSISTREREVLELLTHGLSNAEIGSKLYLSPRTVEKYVSSLLRKTSSNNRA 218 Query: 223 QAIAKAIRFGYI 234 + + AI+ G + Sbjct: 219 ELVRFAIKHGIV 230 >gi|257454885|ref|ZP_05620136.1| response regulator UvrY [Enhydrobacter aerosaccus SK60] gi|257447818|gb|EEV22810.1| response regulator UvrY [Enhydrobacter aerosaccus SK60] Length = 212 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L+ERE + + + ++IA++L +SV TVN Y KL+ + ++ A Sbjct: 145 SPFDALSEREMQVAMMVVNCKSPQQIADQLFVSVKTVNTYRYRIFEKLNIDSDVKLTHLA 204 Query: 229 IRFGYI 234 +R G + Sbjct: 205 MRHGLV 210 >gi|138895707|ref|YP_001126160.1| two-component response regulator ComA [Geobacillus thermodenitrificans NG80-2] gi|196250961|ref|ZP_03149644.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134267220|gb|ABO67415.1| Two-component response regulator ComA [Geobacillus thermodenitrificans NG80-2] gi|196209525|gb|EDY04301.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 223 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 7/125 (5%) Query: 112 LLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 L +GI V + + V + +V +E + + Sbjct: 91 YLIESGITGFVSKTATSEQLITAIRCALRDEAVIPVHLLRQLQLCEVKARMVENEEHVA- 149 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L++ E L +G ++++IA+K +S +V +L KL +RI+A+ KA Sbjct: 150 ----LSQLEQEILFEVANGLSNKDIAKKHYISQRSVERHLSRIFTKLHVSSRIEAVEKAR 205 Query: 230 RFGYI 234 + G I Sbjct: 206 QLGLI 210 >gi|160881748|ref|YP_001560716.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430414|gb|ABX43977.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 232 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + +G+T+ +IA L +S TV Y+ S KL +R Sbjct: 167 PLSELTKREHEICAMIAEGFTNSQIASFLYISEGTVKNYISSIYDKLQIHDRAALAV 223 >gi|152989443|ref|YP_001346571.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964601|gb|ABR86626.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 906 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 40/71 (56%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + A L+ RE + L+L G +++EI+E+L +S+HTV ++ KL R Q Sbjct: 835 AEPAAVAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQ 894 Query: 224 AIAKAIRFGYI 234 A+A+A G + Sbjct: 895 AVARAKHMGLL 905 >gi|29832167|ref|NP_826801.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609285|dbj|BAC73336.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 239 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLA 185 G + ++A + A G ++I DF+ ++ + +TERE L L Sbjct: 107 DMGLDDILAAVRVVAAGDALIAPGVTRRLIQDFVASPEQPRARRELTEITEREREVLTLV 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G T+ EIAE+L +SV T YL KLDA +R+Q + A G + Sbjct: 167 GTGLTNTEIAERLFISVATAKTYLTRLLAKLDARDRVQLVIIAYEAGLV 215 >gi|300784381|ref|YP_003764672.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299793895|gb|ADJ44270.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 1004 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ + L + LT+RE L+ G T+ ++ E+L +S TV+ +L Sbjct: 915 LAHRARVELAGLEPAPPARTVTDPLTDRERDVLERVALGRTNRQVGEELYISEKTVSVHL 974 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL A R +A+A A G + Sbjct: 975 SRVMAKLGASRRAEAVAIAYDRGLL 999 >gi|295394380|ref|ZP_06804604.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972732|gb|EFG48583.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 221 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +L G ++ EIA +L ++ TV ++ KL+ +RI A+ A Sbjct: 159 ERLTAREREVFELVARGKSNAEIAGELFMAGPTVKTHVSHILTKLEVRDRIHAVIFAYEA 218 Query: 232 GYI 234 G + Sbjct: 219 GVV 221 >gi|294630515|ref|ZP_06709075.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|292833848|gb|EFF92197.1| two-component system, regulatory protein [Streptomyces sp. e14] Length = 225 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L+L G T+ E A++L +S TV +L KL+ +R QA+ A Sbjct: 157 RALTGREVEVLRLVARGLTNAEAADRLFISEATVKTHLNRTMTKLNLASRAQAVVVAYES 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|302540779|ref|ZP_07293121.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458397|gb|EFL21490.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 37/80 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 GA +V+ L+ RE L+L GDG T+ +IAE+L L+ TV + Sbjct: 152 GATARVMARLRGPQPSTPDELERLSPREREILELIGDGLTNRQIAERLFLAEKTVKNRIS 211 Query: 211 SATVKLDAVNRIQAIAKAIR 230 S KL RIQA A R Sbjct: 212 SILSKLGVGRRIQAAVIAER 231 >gi|197118634|ref|YP_002139061.1| LuxR family helix-turn-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087994|gb|ACH39265.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter bemidjiensis Bem] Length = 216 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +LT RE +L G +EI +L +S TV Y KL+ N Sbjct: 139 ADEGKPLGKYSLTPREEQAYRLLVAGKNCKEIGYELKISSKTVETYRLKVMKKLNISNIA 198 Query: 223 QAIAKAIRFGYI 234 Q + A++ G + Sbjct: 199 QLVNHAVQEGIV 210 >gi|325298451|ref|YP_004258368.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] gi|324318004|gb|ADY35895.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] Length = 202 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 32/75 (42%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + L++RE + G T++EIAEKL +SVHTV + + T KL Sbjct: 119 LMNFSDDEEDDQDALSQREKEIICCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIH 178 Query: 220 NRIQAIAKAIRFGYI 234 + AI + Sbjct: 179 SAAGLTIYAIVNKLV 193 >gi|319795110|ref|YP_004156750.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597573|gb|ADU38639.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 155 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 10/120 (8%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--------FKKRSSAAR--NL 174 + ++F+ E I H + A +L Sbjct: 28 REDELAALMFSMERSHSPGASRIARHMLALIAAAAKSRPPSAIATKPRTGAAPPAANVSL 87 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE LQL G ++ IAE L S +T++ + S KLD +R +A+ A+ G + Sbjct: 88 SPRELQVLQLVSQGLSNRRIAEALSRSANTIDTQIKSIYRKLDVNSRTRAVRAAMEQGLL 147 >gi|302519506|ref|ZP_07271848.1| two component system response regulator [Streptomyces sp. SPB78] gi|302428401|gb|EFL00217.1| two component system response regulator [Streptomyces sp. SPB78] Length = 221 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G + IAEKL +S TV ++ + K +R +A+ +A+ G Sbjct: 161 LTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALTAGL 220 >gi|239929404|ref|ZP_04686357.1| two-component system DNA-binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437730|ref|ZP_06577120.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340625|gb|EFE67581.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 241 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + E ++ L+ F + LT Sbjct: 123 IRGGARGYVTKTITGADLIDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 182 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 183 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 241 >gi|284035632|ref|YP_003385562.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283814925|gb|ADB36763.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 218 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R+ L+ +E LQ DG +S EIAEKL LSV TV+ + + +L N + Sbjct: 148 RHGRAERQSKLSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHRANMMRRLQVRNAAE 207 Query: 224 AIAKAIRFGYI 234 + A+ I Sbjct: 208 LVRMAVEDKLI 218 >gi|254441153|ref|ZP_05054646.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] gi|198251231|gb|EDY75546.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] Length = 204 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 1/113 (0%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETS 180 V L G+V + L N + A G Y I + + ++ A LTERE Sbjct: 91 VALKAGAAGFVPKSLPAKSLVNAIKFMAMGEQYAPIDFMTAVEQTPTNPLADKLTERELQ 150 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +G +++EIA L + TV ++ + K+ NR QA Sbjct: 151 MLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALIGREANL 203 >gi|153809558|ref|ZP_01962226.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185] gi|149127803|gb|EDM19027.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185] Length = 254 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 41/72 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L A + LT+RE L L G+ S+EIA KL LS++TVN + + KL+ N I Sbjct: 182 LALAVVPADQQLTKREKEILLLIRQGFLSKEIASKLNLSIYTVNNHRKNILAKLNVDNVI 241 Query: 223 QAIAKAIRFGYI 234 +AI +A FG + Sbjct: 242 EAINRAESFGIL 253 >gi|159898252|ref|YP_001544499.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891291|gb|ABX04371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 870 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 39/80 (48%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + + L+ERE L L G +++ IA++L LS++TV A++ + Sbjct: 791 AAFGQMPLMPSAQVALIEPLSERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRNIYG 850 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL NR A+AKA + Sbjct: 851 KLSVNNRTLAVAKAQELAIL 870 >gi|16125332|ref|NP_419896.1| LuxR family transcriptional regulator [Caulobacter crescentus CB15] gi|221234071|ref|YP_002516507.1| LuxR family transcriptional regulator [Caulobacter crescentus NA1000] gi|13422382|gb|AAK23064.1| transcriptional regulator, LuxR family [Caulobacter crescentus CB15] gi|220963243|gb|ACL94599.1| LuxR family transcriptional regulator [Caulobacter crescentus NA1000] Length = 137 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A+ +LT +E L+ G +++EIA LGLS +TV ++G+ KL+ R QA+ Sbjct: 68 DAALASLSLTGQEIKVLERLAAGRSNKEIARDLGLSPNTVKTHVGNLYAKLEVSRRTQAV 127 Query: 226 AKAIRFGYI 234 KA I Sbjct: 128 GKARELSLI 136 >gi|290955970|ref|YP_003487152.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260645496|emb|CBG68584.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 3/105 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGY 189 + + + A E ++ A + + + L T RE L L G Sbjct: 114 LLAAIETVAAGEPMLSAAATAALMGRFQAHAPRNWAKETERLAELTPREREMLVLVASGL 173 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+++I+E+L LS HTV ++ A K+ R Q + A G + Sbjct: 174 TNDDISERLQLSRHTVKTHVNRAMTKIGVSERAQLVTIAYESGLV 218 >gi|238028111|ref|YP_002912342.1| putative DNA-binding response regulator [Burkholderia glumae BGR1] gi|237877305|gb|ACR29638.1| Putative DNA-binding response regulator [Burkholderia glumae BGR1] Length = 276 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 18/225 (8%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SS E L + +I D +Q + + D + + Sbjct: 7 SSDAERRDGLRALLRQIDRHG-------GHNDAKDWRQAMRLVRQQSFDLIVVDFLSAMR 59 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG--GLLPFAGIAFPVRLGFHKN 129 D P+ + + + Q S ++G A + Sbjct: 60 LDDLRALCGACAPTPVA-MLVDTTSPAIAPDQFSTGVQGVVPRGMGAHLVI------RAF 112 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 V+ ++ +++A A + + +R + L+ R+ ++ G Sbjct: 113 EMVLLGGYYVPPCALNLLDADAAEQRATRRLGSIPLRRQPSIGTLSPRQAQIMRFVHMGN 172 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T++ IA LG+S TV +L S +L A NR A+ AI G++ Sbjct: 173 TNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 215 >gi|291298613|ref|YP_003509891.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567833|gb|ADD40798.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 207 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + I+ + + +R LTERE L+ +G ++ EI L +S Sbjct: 117 QAIMLICPRAAGLNGGQRRVPTQRGGPV-GLTEREMQVLRGMSEGKSNAEIGRDLFVSED 175 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ + KL A +R A+A+ R G + Sbjct: 176 TIKTHARRLFRKLGARDRAHAVAEGFRGGIV 206 >gi|332669029|ref|YP_004452037.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338067|gb|AEE44650.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 965 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 60/195 (30%), Gaps = 13/195 (6%) Query: 40 SALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIE 99 + R + L + G P W++ E Sbjct: 780 ARTTAERGRPRGGVLGPEGRAWLARAHAEHG--------RLVGGNDPEAWRAALREFGYG 831 Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 +L + R T+ A + A Sbjct: 832 HRYEL-----ARTRWRLAESLLERGERDAARDEAATALAEADAMGAVPLATAVRGLARRG 886 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L+L R++ A LT RE L L G ++ +I EKL +S TV+ ++ + KL Sbjct: 887 RLDLPGVRAAGADVLTAREVEVLGLVAQGLSNRQIGEKLFISGKTVSVHISNLLAKLGVS 946 Query: 220 NRIQAIAKAIRFGYI 234 R +A++ A + G I Sbjct: 947 GRAEAVSVAHQRGLI 961 >gi|304408549|ref|ZP_07390170.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307305377|ref|ZP_07585125.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304352370|gb|EFM16767.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306911680|gb|EFN42105.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 214 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + +IAE L + + TV + + KL+A N + + R G Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214 >gi|238789482|ref|ZP_04633267.1| Two-component response regulator [Yersinia frederiksenii ATCC 33641] gi|238722432|gb|EEQ14087.1| Two-component response regulator [Yersinia frederiksenii ATCC 33641] Length = 210 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|237734801|ref|ZP_04565282.1| transcriptional regulator [Mollicutes bacterium D7] gi|229382129|gb|EEO32220.1| transcriptional regulator [Coprobacillus sp. D7] Length = 71 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L ++ +IA+ LG+S TV ++ + KL +RIQA+ Sbjct: 9 LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 60 >gi|223936673|ref|ZP_03628583.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894524|gb|EEF60975.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 198 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L ++ L++RE L+L G EIA++L LSV T++ Y K+ Sbjct: 121 LASYLSADTQK-PPQELLSDREFQVLRLIASGKIVSEIAKELSLSVKTISTYRTRILEKM 179 Query: 217 DAVNRIQAIAKAIRFGYI 234 N + + AI+ + Sbjct: 180 GMKNNAELMHYAIQHQLV 197 >gi|168180051|ref|ZP_02614715.1| DNA-binding response regulator, LuxR family [Clostridium botulinum NCTC 2916] gi|182669120|gb|EDT81096.1| DNA-binding response regulator, LuxR family [Clostridium botulinum NCTC 2916] Length = 217 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL S NLTERE + ++ +G +++EIAEK+ LS T+ + + KLD +R Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDR 203 Query: 222 IQAIAKAIRFGYI 234 Q A + + Sbjct: 204 TQIAIFAFKNNIV 216 >gi|167755832|ref|ZP_02427959.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402] gi|167704771|gb|EDS19350.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402] Length = 67 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L ++ +IA+ LG+S TV ++ + KL +RIQA+ Sbjct: 5 LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 56 >gi|153940488|ref|YP_001390741.1| LuxR family DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936384|gb|ABS41882.1| DNA-binding response regulator, LuxR family [Clostridium botulinum F str. Langeland] gi|295318814|gb|ADF99191.1| DNA-binding response regulator, LuxR family [Clostridium botulinum F str. 230613] Length = 217 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL S NLTERE + ++ +G +++EIAEK+ LS T+ + + KLD +R Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDR 203 Query: 222 IQAIAKAIRFGYI 234 Q A + + Sbjct: 204 TQIAIFAFKNNIV 216 >gi|146309197|ref|YP_001189662.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145577398|gb|ABP86930.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 220 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 6/116 (5%) Query: 125 GFHKNGYVIFTSEF---LMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178 GY++ + + +V V L +R+ + LT RE Sbjct: 98 NAGAVGYLLKDASRQEVIDGLRQVAAGQCALNGMVSAQLLRRVVQRNQGGAPGSALTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G+T+ EI E+LG++ T A++ KL +R QA + I G + Sbjct: 158 HQVLELIAAGFTNREIGEELGIATGTAKAHVERVIGKLGVADRTQAAVQGIALGLV 213 >gi|86747337|ref|YP_483833.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570365|gb|ABD04922.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 228 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + LT RE + L G +++IA +L LS TV + G+ K+ + Sbjct: 136 AHRDESIRLRYEQLTPREREVMALVAAGLMNKQIAWRLSLSEITVKIHRGNMIRKMQVKS 195 Query: 221 RIQAIAKAIRFG 232 + + A + G Sbjct: 196 VAELVRLADQLG 207 >gi|77362110|ref|YP_341684.1| LuxR family CSG operon transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76877021|emb|CAI89238.1| putative csg operon transcription regulator (LuxR family) [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 39/80 (48%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + E + + ++LT+RE S + L G ++ IA+KL +S HTV +L Sbjct: 139 LVATSSFSSLHEGIELKQDDYQHLTKRERSVIHLIAQGASNSVIADKLNISDHTVKTHLY 198 Query: 211 SATVKLDAVNRIQAIAKAIR 230 SA K + NR++ A R Sbjct: 199 SAFKKTSSRNRVELANWAQR 218 >gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 215 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE ++L G + +IAE + +S T+ +++ + K NR + AI Sbjct: 154 ELTPRELKVVKLVAQGMANRDIAEIMEVSQRTIESHVSNMLGKTGLHNRTELARWAIE 211 >gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 319 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVA 309 >gi|194289452|ref|YP_002005359.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223287|emb|CAQ69292.1| putative Prolyl aminopeptidase, LuxR DNA binding domain C_term [Cupriavidus taiwanensis LMG 19424] Length = 366 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 36/90 (40%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + +V R A LT RE ++L G + +IA L L Sbjct: 272 DTEPAWRRWLEEVRAFLPSAQPARCPAFTALTRRERDIVELIAQGRDNAQIAAHLDLCEK 331 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ S KL+ NR QAI A + G+ Sbjct: 332 TVRNHITSIFAKLEVENRGQAIVLARKAGF 361 >gi|253699733|ref|YP_003020922.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251774583|gb|ACT17164.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 216 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ------VITDFLELFKKRSSAA 171 ++ R G S L+ A + V L + + Sbjct: 90 VSQAFRAGARGYLLKDCASAELVQAVRQVACGEMYVCHGIIGVVVHDYVTRLPESLTQPE 149 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL +G ++ A +L ++V TV+ + KL + + AIR Sbjct: 150 VPLTPREREVLQLIAEGNNAKNAAYQLNINVKTVDTHRQQIMKKLKMRSVAELTKYAIRE 209 Query: 232 GYI 234 G I Sbjct: 210 GLI 212 >gi|163747623|ref|ZP_02154970.1| probable transcription regulator protein [Oceanibulbus indolifex HEL-45] gi|161379093|gb|EDQ03515.1| probable transcription regulator protein [Oceanibulbus indolifex HEL-45] Length = 241 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L + +LT R+ L +G++++EIA L LS TV +++ KL NR Sbjct: 156 QLLAAENPDNPDLTRRQYEVLYALANGHSNKEIARDLELSEATVKSHVRQVMRKLHVDNR 215 Query: 222 IQAIAKAIRF 231 QA A Sbjct: 216 TQAALLARDL 225 >gi|146307690|ref|YP_001188155.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575891|gb|ABP85423.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 213 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 Y++ +S L + + A G + EL + + L+ RE LQ A Sbjct: 101 AGAQAYLLKSSLRKELVETIRLVAAGKRHIPAEIAAELAEHIG--QQCLSPREVEVLQAA 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY++ +IA +L ++ TV ++ KL A NR A+A A++ G + Sbjct: 159 ALGYSNRDIALQLRITEDTVKGHMRLIMDKLGANNRTHAVAIAVQRGVL 207 >gi|82544494|ref|YP_408441.1| DNA-binding transcriptional regulator CsgD [Shigella boydii Sb227] gi|157160562|ref|YP_001457880.1| DNA-binding transcriptional regulator CsgD [Escherichia coli HS] gi|170020563|ref|YP_001725517.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ATCC 8739] gi|188492464|ref|ZP_02999734.1| transcriptional regulator CsgD [Escherichia coli 53638] gi|300918637|ref|ZP_07135219.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1] gi|312971173|ref|ZP_07785351.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1827-70] gi|81245905|gb|ABB66613.1| putative 2-component transcriptional regulator for 2nd curli operon [Shigella boydii Sb227] gi|157066242|gb|ABV05497.1| transcriptional regulator CsgD [Escherichia coli HS] gi|169755491|gb|ACA78190.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|188487663|gb|EDU62766.1| transcriptional regulator CsgD [Escherichia coli 53638] gi|300414180|gb|EFJ97490.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1] gi|309701312|emb|CBJ00613.1| probable csgab operon transcriptional regulator [Escherichia coli ETEC H10407] gi|310336375|gb|EFQ01561.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1827-70] gi|323937781|gb|EGB34045.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] gi|332094032|gb|EGI99084.1| putative csgAB operon transcriptional regulatory protein [Shigella boydii 3594-74] Length = 216 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|163940925|ref|YP_001645809.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863122|gb|ABY44181.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 595 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 508 QGMSHKIFEKFDEQIETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 568 YASTAYTKLGVRNKEEAVQKALEIGII 594 >gi|329934424|ref|ZP_08284503.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329306020|gb|EGG49875.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 227 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 3/113 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETS 180 V +G + S +LA + + + AA LT RE Sbjct: 107 VHAAELLSGIRVVASGESVLAPSATRRL--IGHYASGPGVRTPDPEAPAALETLTAREHD 164 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G T+ EIA LG++V TV +++ + KL+ +R+QA A G Sbjct: 165 VLRLIASGLTNAEIAGHLGIAVGTVKSHVNAVLRKLELRDRVQATILAYDLGL 217 >gi|317125093|ref|YP_004099205.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589181|gb|ADU48478.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 238 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 55/222 (24%), Gaps = 12/222 (5%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + F + + E D + L G Sbjct: 21 ADDHPMWRDAVARDLVEAGFDVVATADDGHGAVNRTRATE-----PDVLVLDLHLPGLTG 75 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + G P ++ + + AG + + ++ Sbjct: 76 AEVCARLAQGSRPGRPRTRILILSASGDSKDVLEA-----VKAGALGYLVKSAGREEFLA 130 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTS 191 G A LT+RET L+ G Sbjct: 131 AVRSTAAGEPVFTARLAGLVLGEFRRVRSEAADSASRRAVPELTDRETEILKYVATGMGY 190 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +EIA L LS TV ++ + KL NR++ A G Sbjct: 191 KEIAAALFLSHRTVQNHVQNIFGKLHLNNRVELARFAYERGI 232 >gi|297161015|gb|ADI10727.1| transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 257 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 22/232 (9%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL---HNYDLDSGDIPNILIETYG 73 ++ + + A + + R Q L +G+I + + Sbjct: 24 VADLAEGLLRVVGAD-----CVCIDICRAWRTQTPSVTMAGEPNALSAGEIDQWMALSAD 78 Query: 74 DDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D ++ + + P +++ T + + + R+ + Sbjct: 79 DPYIGNLLATGDPRPYRTSDFMTFNRFRQTLVYQEVFAQYGMRHLLVMTPRITDEDLVLI 138 Query: 133 IFTSEFLMLANEVIIEAHGA-------------CYQVITDFLELFKKRSSAARNLTERET 179 T ++ H + + LTERE Sbjct: 139 GLTRRLHDFSDRETRALHPIRDLIATALDYQAKVTAIQAEISAGPPAAPPRRCTLTEREN 198 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L G+T+++ A KLG+S T+ +L K + +R A+A +R Sbjct: 199 QVLALIATGHTNDQAARKLGISPRTIRKHLEGVFSKANVPSRAAAVAWWLRQ 250 >gi|256420776|ref|YP_003121429.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035684|gb|ACU59228.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 211 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q+I D KK LT RE LQL D +T++EIA+KL LS+HTV + Sbjct: 129 ALNQQLIEDMFR-NKKSEKKNTALTRREKEVLQLIIDEHTNQEIADKLFLSLHTVENHRI 187 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL+ N + A++ G + Sbjct: 188 SLLHKLEVKNTAGLVKVALQTGLV 211 >gi|153835526|ref|ZP_01988193.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01] gi|148867896|gb|EDL67113.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01] Length = 212 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G++S++IA L +S TV + + KLD + + A G Sbjct: 150 PLSRREEAVLKLVAQGHSSKKIATLLDISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209 Query: 233 Y 233 Sbjct: 210 L 210 >gi|89093728|ref|ZP_01166675.1| two-component transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89082124|gb|EAR61349.1| two-component transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 303 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 31/56 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 TERE+ L +G T+ EIAE LG+S TVN +L KL NR A A+R Sbjct: 242 TERESEVLHWIANGKTNREIAEILGMSPRTVNKHLEQLFPKLGVENRTAAAGVALR 297 >gi|317506347|ref|ZP_07964159.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255357|gb|EFV14615.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 225 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 3/118 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + S + + + A + + + Sbjct: 106 RAGARGYVTKSISGDDLAESVRRVASGDAVFSPGL---AGFVLDAFASAAVAEEPVSNPD 162 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L+L GYT EIA +L +SV TV + + K NR A Sbjct: 163 LDSLTPRELDVLRLLARGYTYREIASELFISVKTVETHTSNVLRKTQQSNRNALTWWA 220 >gi|302546395|ref|ZP_07298737.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302464013|gb|EFL27106.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 223 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 44/121 (36%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + + + V + + A A + Sbjct: 100 LRAGASGFLLKRARADDLVQAVRLVARSDSLLFPAAVRALAAEHAAAAGGRDAARALRDR 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G ++ EIA +L + TV ++ + KL +R QA+ A G+ Sbjct: 160 LSEREADVLRLMAAGLSNAEIAARLTVGPATVKTHVAAVLGKLGVRDRTQAVIAAYECGF 219 Query: 234 I 234 + Sbjct: 220 V 220 >gi|194428408|ref|ZP_03060948.1| transcriptional regulator CsgD [Escherichia coli B171] gi|260843280|ref|YP_003221058.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O103:H2 str. 12009] gi|194413460|gb|EDX29742.1| transcriptional regulator CsgD [Escherichia coli B171] gi|257758427|dbj|BAI29924.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O103:H2 str. 12009] gi|323163719|gb|EFZ49538.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli E128010] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|182439137|ref|YP_001826856.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467653|dbj|BAG22173.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 244 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G++++ IAE+L +S TV ++ A KL A +R Q + Sbjct: 173 AERLAALTGREREVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVI 232 Query: 228 AIRFGYI 234 A G + Sbjct: 233 AYESGLV 239 >gi|83310970|ref|YP_421234.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945811|dbj|BAE50675.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 213 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Query: 155 QVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 V +F L K ++ A T RE L L G +++EIA +L L T+ + Sbjct: 123 YVPAEFAALPSKPAAPATPTLDPSLFTSREMEVLALIVAGASNKEIARQLDLQEVTIKLH 182 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L KL NR A A+R G + Sbjct: 183 LTRIFQKLGVKNRSHAAVTAVRGGLV 208 >gi|291543163|emb|CBL16273.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Ruminococcus bromii L2-63] Length = 212 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ G T+ EIA++L ++ TV Y+ K +R + KA G + Sbjct: 144 TERELEVLRELTSGDTNTEIAKRLYIAPGTVKNYIQYMLEKTGFKSRTELAVKAREAGLV 203 >gi|325678873|ref|ZP_08158471.1| transcriptional regulator, LuxR family [Ruminococcus albus 8] gi|324109377|gb|EGC03595.1| transcriptional regulator, LuxR family [Ruminococcus albus 8] Length = 209 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 42/89 (47%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +++ A V K + + TERE L++ G T++++AE+LG+S +T Sbjct: 116 EVMDRTMAGDHVYPRSSPTVKLGLADSSEFTERELEILRVVTTGATNQQVAEQLGISENT 175 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V +++ S K +R + KA G Sbjct: 176 VKSHVRSMLDKTGFRSRTELAIKARVIGI 204 >gi|268610385|ref|ZP_06144112.1| response regulator [Ruminococcus flavefaciens FD-1] Length = 208 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET ++L DG ++EIA KL L+ TV + KL+ +R Q AI+ Sbjct: 147 GLTERETEFIRLICDGCDNKEIAAKLFLAEGTVRNGISRLLEKLELKDRTQLAVFAIKNN 206 Query: 233 YI 234 + Sbjct: 207 IV 208 >gi|255525483|ref|ZP_05392420.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296188583|ref|ZP_06856971.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255510848|gb|EET87151.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296046847|gb|EFG86293.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 214 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERET ++ G+ +++IA L +S TV Y+ + KL +R A Sbjct: 155 ELSERETEIAKMLSMGFNNKQIASSLFISEGTVKNYISNIYSKLGTSDRTSAAIM 209 >gi|257056288|ref|YP_003134120.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586160|gb|ACU97293.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 239 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + ++ S L+E+E + L L G+G T+ EIA +L L+ TV Y+ K Sbjct: 133 ALMNRIRREREESDPVSGLSEQERAVLDLIGEGLTNREIAARLYLAEKTVKNYVSRLLGK 192 Query: 216 LDAVNRIQAIAKAIRF 231 L R QA A Sbjct: 193 LGMQRRTQAAVLATEL 208 >gi|224369897|ref|YP_002604061.1| two-component response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223692614|gb|ACN15897.1| two-component response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 218 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLE-----LFKKRSSAARNLTER 177 G+++ TS L +++ A C + + +E K + LT R Sbjct: 100 AGAKGFLLKTSSLEDLHTAILMVASGKSYLCPEALNIMMEDIQTPGDTKLLCPLQRLTLR 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E +QL +GYTS+EI+EKL +S TV+ + + KL A++ G I Sbjct: 160 ERGVIQLIAEGYTSQEISEKLNISKRTVDVHRTNTMNKLKIHTIAGLTRFAVKEGLI 216 >gi|261408559|ref|YP_003244800.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. Y412MC10] gi|261285022|gb|ACX66993.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. Y412MC10] Length = 902 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L+L G ++ +I+EKL +++ TV + KL A R +A+A+A Sbjct: 840 EPLSRRELEVLRLIAQGLSNRQISEKLFVALSTVKGHNRIIFDKLQATRRTEAVARAREL 899 Query: 232 GYI 234 G + Sbjct: 900 GLL 902 >gi|149200778|ref|ZP_01877753.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149145111|gb|EDM33137.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 202 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ +LTE+E L+LA DG T++EIA +G + T+ ++ S KL+A NR A Sbjct: 134 DKAGPEHDLTEKELFVLRLAADGLTNKEIARDMGTNEVTIKMHMRSICKKLNARNRAHAA 193 Query: 226 AKAIRFGYI 234 + I Sbjct: 194 MISRERALI 202 >gi|110833289|ref|YP_692148.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110646400|emb|CAL15876.1| DNA-binding response regulator, LuxR family [Alcanivorax borkumensis SK2] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + + K S + +LT+RE L++ G + +IA L LS HT Sbjct: 129 ELWFPRAVLQTYLMKSRTFNKTFSRSEVSLTDREVEVLKVMATGAKNSDIACSLNLSPHT 188 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRF 231 + ++ + K++A NR+QA+ A Sbjct: 189 IKTHIYNIFKKINASNRLQAVNWAQEN 215 >gi|86608718|ref|YP_477480.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557260|gb|ABD02217.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 198 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 9/162 (5%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + S PI + ++ LP + Sbjct: 42 VQYCRSC--PIDVAILDVRMPDGDGIAACQQITELGLPVVVVMMTTFQEPGLIEAARRAG 99 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSE 192 L+ E +VI L ++ AR LT RE LQL +G ++ Sbjct: 100 AKGYLSKETDPA---ELARVIRQILSNPERDWLPARQELPKLTPRELCVLQLMKEGLANK 156 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA +LGLS+ TV Y +A KLDA +R+ A+ KA + G + Sbjct: 157 QIARRLGLSIETVKEYASTAYRKLDASDRVTALLKAQQLGIL 198 >gi|332995301|gb|AEF05356.1| putative LuxR family transcriptional regulator [Alteromonas sp. SN2] Length = 103 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L++RE + +G +++ IA +L +S TV + + KL +R IA Sbjct: 34 PIDTLSKRELQVARKIMEGLSNKAIAAELFISERTVKFHCANIYKKLKISSRTALIA 90 >gi|284008488|emb|CBA74985.1| two-component system, NarL family, nitrate/nitrite response regulator [Arsenophonus nasoniae] Length = 206 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT+RE L+ +G + EI++ L +S TV ++ + KL+ +R++A Sbjct: 144 PLSSLTKREFEVLREIANGLKNREISKYLFISEETVKVHIRNLLKKLNVRSRLEA 198 >gi|260072623|gb|ACX30521.1| two-component system nitrate/nitrite response regulator [uncultured SUP05 cluster bacterium] gi|269468662|gb|EEZ80302.1| two component LuxR family transcriptional regulator [uncultured SUP05 cluster bacterium] Length = 209 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 155 QVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 V+ L + +LT RE G++++ IA +LG+S TV ++ S Sbjct: 128 HVLAKVLRNELTDSEPSFDSLTNREKEVSCQVAIGHSNKVIARELGISDGTVKLHVKSIL 187 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KL +R++ GY Sbjct: 188 KKLSLSSRVEVAVMVTEKGY 207 >gi|302539071|ref|ZP_07291413.1| two component system response regulator [Streptomyces sp. C] gi|302447966|gb|EFL19782.1| two component system response regulator [Streptomyces sp. C] Length = 230 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 38/111 (34%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G I + + ++A +LT RE L Sbjct: 119 NAGRQDITRAIRAAAAGQSVLDREVQARLLATVKTQAPPPGGPLPLPLPEDLTRREREVL 178 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G G + IAE+L +S TV ++ + K +R A+ +AI G Sbjct: 179 ALIGQGLPNRGIAEQLFISEATVKTHINNLFAKAGIRDRADAVRRAIASGL 229 >gi|297191286|ref|ZP_06908684.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718427|gb|EDY62335.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 18/160 (11%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 + + ++ I + L ++ ++ A Sbjct: 55 DIRMPGTDGIEATRQITERHDGTHVIVLTTFDDDDCVYGALRAGAAGYLVKDMALDDILA 114 Query: 153 CYQVI------------TDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEI 194 +V+ + F R + A +T+RE L L G G ++ EI Sbjct: 115 AVRVVAAGDGLISPAVTRRLIREFAGRPAGAGPKRELAGITDREREVLTLVGSGLSNSEI 174 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L +SV T Y+ KL A +R++ + A G + Sbjct: 175 AEALFISVATAKTYVTRLLSKLGARDRVRLVIIAYETGLV 214 >gi|189402762|ref|ZP_03006834.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4486] gi|300938742|ref|ZP_07153464.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|189364696|gb|EDU83115.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4486] gi|300456315|gb|EFK19808.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|323975265|gb|EGB70369.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 94 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 150 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 151 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 210 Query: 227 K 227 + Sbjct: 211 R 211 >gi|307332414|ref|ZP_07611482.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306881948|gb|EFN13066.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 240 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ A + E ++ L+ F + LT Sbjct: 122 IRGGARGYVTKTITGTDLVDAIFRVSEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 182 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 240 >gi|301017700|ref|ZP_07182371.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300400050|gb|EFJ83588.1| response regulator receiver domain protein [Escherichia coli MS 69-1] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 94 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 150 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 151 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 210 Query: 227 K 227 + Sbjct: 211 R 211 >gi|288920973|ref|ZP_06415266.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288347607|gb|EFC81891.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 226 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 10/127 (7%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G + G+ VR + + ++A + I + Sbjct: 104 FLGKDVEADGLLAAVRTVAAGEALLSPAATRALIAQ----------FVAIPEPTATAAAS 153 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +A LT RE + LA +G++++EIA KL +S T ++ A KLDA +R Q + Sbjct: 154 HAALDTLTAREREVMILAAEGHSNQEIAAKLVISPLTARTHVHRAMAKLDARDRAQLVVI 213 Query: 228 AIRFGYI 234 A + G + Sbjct: 214 AYQTGLL 220 >gi|55980999|ref|YP_144296.1| response regulator [Thermus thermophilus HB8] gi|55772412|dbj|BAD70853.1| response regulator [Thermus thermophilus HB8] Length = 192 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 153 CYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ L + + + LT RE L+L +G +++EIA L LS TV ++ Sbjct: 106 APELKRRLLRIRQGEERLTAPDIPALTPREEEVLRLLAEGLSTKEIARALRLSPETVRSH 165 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L S KL+A NR++A+++A G++ Sbjct: 166 LESLYAKLEARNRVEALSRARSLGFL 191 >gi|297563606|ref|YP_003682580.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848054|gb|ADH70074.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 252 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+RE + L G ++ EIA LGLS T+ +++ S K NR+Q + A R Sbjct: 181 EQFTDREKDVVALVATGASNAEIAGVLGLSETTIKSHVSSVLAKRGLRNRVQLVVWAFRS 240 Query: 232 GYI 234 G + Sbjct: 241 GLV 243 >gi|239930346|ref|ZP_04687299.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438691|ref|ZP_06578081.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291341586|gb|EFE68542.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] Length = 219 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-RSSAARNLT 175 LG +GYV+ + L G A +I ++L+L + R+ + +T Sbjct: 99 LGAGASGYVLKSVADRDLVEACRATMRGEPFLYPGAVNALIRNYLDLARDGRNLPPKAIT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L +G TS++IA+ L +S TV + + KL +R++ AIR G I Sbjct: 159 DREEEILKLVAEGNTSQQIADLLVISPKTVERHRANLLSKLGLKDRLELTRYAIRVGLI 217 >gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900] Length = 319 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVA 309 >gi|120601720|ref|YP_966120.1| two component LuxR family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120561949|gb|ABM27693.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris DP4] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +S L++RE L+L +G+ ++ +AEKL +S TV + + KL Sbjct: 139 LRHGRRDEASMLDLLSDREKQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTA 198 Query: 220 NRIQAIAKAIRFGY 233 + + + AI G Sbjct: 199 STAELVTFAIEHGL 212 >gi|293400727|ref|ZP_06644872.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305753|gb|EFE46997.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 205 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L +RE + L +G ++EIAE L LS TV YL + KL +R Q + Sbjct: 146 LNDREQQFISLVANGLNNKEIAETLFLSEGTVRNYLSNLLDKLGLRDRTQLAIFFYQH 203 >gi|229110649|ref|ZP_04240214.1| Two-component protein Kinase [Bacillus cereus Rock1-15] gi|229128492|ref|ZP_04257471.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4] gi|228654995|gb|EEL10854.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4] gi|228672822|gb|EEL28101.1| Two-component protein Kinase [Bacillus cereus Rock1-15] Length = 592 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDAQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|325277057|ref|ZP_08142715.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097807|gb|EGB95995.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 491 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Query: 140 MLANEVIIEAHGACYQVITDFL---ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194 V+ +A +I + R A +LT RE L L +G +EI Sbjct: 390 EAIETVMQDASWFSQTLIEKLANAKRINTGRLPDASFTDLTRRERDVLALICEGLADKEI 449 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L L+++TV ++ + KLD +R +AI A Sbjct: 450 AARLNLALNTVRNHVATVYSKLDVHSRSEAIVWARERRL 488 >gi|293409411|ref|ZP_06652987.1| conserved hypothetical protein [Escherichia coli B354] gi|291469879|gb|EFF12363.1| conserved hypothetical protein [Escherichia coli B354] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|302549213|ref|ZP_07301555.1| two-component system regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302466831|gb|EFL29924.1| two-component system regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + E ++ + + S+A LT RE + LA G ++++IA Sbjct: 118 RVAARGEALLAPSITRKLIHRYVTQPPPTTSAALEELTSREREAVALAARGLSNDQIAGH 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +S T ++ A KL A +R Q + A G + Sbjct: 178 MVISPMTAKTHINRAMTKLHAHDRAQLVVLAYESGLV 214 >gi|237722799|ref|ZP_04553280.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|229447321|gb|EEO53112.1| transcriptional regulator [Bacteroides sp. 2_2_4] Length = 257 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI G + Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256 >gi|146307562|ref|YP_001188027.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145575763|gb|ABP85295.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 904 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + LA G ++EEI ++L L++ TV +L + KL NR QAI +A Sbjct: 840 EGLTEREREVVCLAAKGLSNEEIGQQLSLALGTVKWHLHNIYEKLKVRNRTQAIRRAREL 899 Query: 232 GYI 234 + Sbjct: 900 SLL 902 >gi|30021317|ref|NP_832948.1| two-component protein kinase [Bacillus cereus ATCC 14579] gi|218232352|ref|YP_002367934.1| Two-component protein Kinase [Bacillus cereus B4264] gi|29896871|gb|AAP10149.1| Two-component protein Kinase [Bacillus cereus ATCC 14579] gi|218160309|gb|ACK60301.1| Two-component protein Kinase [Bacillus cereus B4264] Length = 595 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F + + + A LT RE LQL G IA +L LS TV Sbjct: 508 QGMSHKIFEKFDAQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 568 YASTAYTKLGVRNKEEAVQKALEIGII 594 >gi|16764498|ref|NP_460113.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179660|ref|YP_216077.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614644|ref|YP_001588609.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553080|ref|ZP_02346830.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993996|ref|ZP_02575088.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234058|ref|ZP_02659116.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237217|ref|ZP_02662275.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168822574|ref|ZP_02834574.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469443|ref|ZP_03075427.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737293|ref|YP_002114139.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249466|ref|YP_002146903.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262382|ref|ZP_03162456.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243879|ref|YP_002215996.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389724|ref|ZP_03216335.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930806|ref|ZP_03221679.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207857350|ref|YP_002244001.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584353|ref|YP_002638151.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911038|ref|ZP_04654875.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|6014730|sp|O54294|CSGD_SALTY RecName: Full=Probable csgAB operon transcriptional regulatory protein gi|2739237|emb|CAA05315.1| CsgD protein [Salmonella typhimurium] gi|16419657|gb|AAL20072.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62127293|gb|AAX64996.1| putative transcriptional regulator (LuxR/UhpA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364008|gb|ABX67776.1| hypothetical protein SPAB_02394 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194455807|gb|EDX44646.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712795|gb|ACF92016.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197213169|gb|ACH50566.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240637|gb|EDY23257.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289893|gb|EDY29254.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938395|gb|ACH75728.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602169|gb|EDZ00715.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320265|gb|EDZ05469.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322437|gb|EDZ10276.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328037|gb|EDZ14801.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331948|gb|EDZ18712.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341044|gb|EDZ27808.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709153|emb|CAR33486.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468880|gb|ACN46710.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246354|emb|CBG24163.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992909|gb|ACY87794.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157683|emb|CBW17175.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912129|dbj|BAJ36103.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086418|emb|CBY96191.1| Transcriptional regulatory protein uhpA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223757|gb|EFX48820.1| Transcriptional regulator CsgD for 2nd curli operon [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616512|gb|EFY13421.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619764|gb|EFY16639.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622541|gb|EFY19386.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629692|gb|EFY26467.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632588|gb|EFY29334.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636917|gb|EFY33620.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641545|gb|EFY38183.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644846|gb|EFY41380.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649699|gb|EFY46129.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653990|gb|EFY50313.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658522|gb|EFY54784.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663380|gb|EFY59582.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670114|gb|EFY66254.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674821|gb|EFY70912.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676708|gb|EFY72775.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682630|gb|EFY78649.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686312|gb|EFY82294.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714130|gb|EFZ05701.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129411|gb|ADX16841.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195731|gb|EFZ80907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199879|gb|EFZ84968.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203139|gb|EFZ88169.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209142|gb|EFZ94079.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209647|gb|EFZ94576.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217898|gb|EGA02613.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222185|gb|EGA06569.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224956|gb|EGA09214.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229700|gb|EGA13823.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232925|gb|EGA17021.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240660|gb|EGA24702.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242973|gb|EGA26994.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247665|gb|EGA31610.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252666|gb|EGA36504.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255707|gb|EGA39459.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261744|gb|EGA45316.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266904|gb|EGA50389.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269946|gb|EGA53395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623745|gb|EGE30090.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628199|gb|EGE34542.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988033|gb|AEF07016.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|16129003|ref|NP_415558.1| DNA-binding transcriptional activator for csgBA [Escherichia coli str. K-12 substr. MG1655] gi|89107885|ref|AP_001665.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli str. K-12 substr. W3110] gi|170080692|ref|YP_001730012.1| DNA-binding transcriptional regulator of adhesion determinants [Escherichia coli str. K-12 substr. DH10B] gi|238900295|ref|YP_002926091.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli BW2952] gi|256023262|ref|ZP_05437127.1| DNA-binding transcriptional regulator CsgD [Escherichia sp. 4_1_40B] gi|300950131|ref|ZP_07164076.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300954426|ref|ZP_07166878.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|301644945|ref|ZP_07244913.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|307137675|ref|ZP_07497031.1| DNA-binding transcriptional regulator CsgD [Escherichia coli H736] gi|331641579|ref|ZP_08342714.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H736] gi|1706166|sp|P52106|CSGD_ECOLI RecName: Full=CsgBAC operon transcriptional regulatory protein gi|1147562|emb|CAA62280.1| putative regulatory protein [Escherichia coli K-12] gi|1787277|gb|AAC74124.1| DNA-binding transcriptional activator for csgBA [Escherichia coli str. K-12 substr. MG1655] gi|4062613|dbj|BAA35830.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli str. K12 substr. W3110] gi|169888527|gb|ACB02234.1| DNA-binding transcriptional regulator of adhesion determinants [Escherichia coli str. K-12 substr. DH10B] gi|238860897|gb|ACR62895.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli BW2952] gi|260449819|gb|ACX40241.1| transcriptional regulator, LuxR family [Escherichia coli DH1] gi|300318576|gb|EFJ68360.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|300450478|gb|EFK14098.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|301076735|gb|EFK91541.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|323942508|gb|EGB38675.1| luxR family protein regulatory protein [Escherichia coli E482] gi|331038377|gb|EGI10597.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H736] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|145224429|ref|YP_001135107.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145216915|gb|ABP46319.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L +R+ LT++E L L G+G T+++IA ++ L+ TV Sbjct: 122 RSLLDNRAAAALMAKLRGEGERTDPLSGLTDQERVLLDLLGEGLTNKQIAARMFLAEKTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAK 227 Y+ KL R QA Sbjct: 182 KNYVSRLLAKLGMERRTQAAVF 203 >gi|296503059|ref|YP_003664759.1| two-component protein kinase [Bacillus thuringiensis BMB171] gi|296324111|gb|ADH07039.1| two-component protein kinase [Bacillus thuringiensis BMB171] Length = 319 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLE--LFKKRSSAAR-N 173 +R G S L + ++ H +++ + E LF+ RS Sbjct: 198 IRNGADGYVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGIEYG 257 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L G + IA L LS TV Y + KL NR +A+ KA G Sbjct: 258 LSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 317 Query: 234 I 234 + Sbjct: 318 L 318 >gi|255264294|ref|ZP_05343636.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62] gi|255106629|gb|EET49303.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62] Length = 214 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE S L G +++E+A L +SV TV + + KL A+ Sbjct: 144 ASALTNREQSILLQLAQGKSNKEVAIDLEISVRTVETHRKNIKRKLGISTTAGLTRYAME 203 Query: 231 FGYI 234 G + Sbjct: 204 NGVL 207 >gi|238025165|ref|YP_002909397.1| response regulator, NarL family protein [Burkholderia glumae BGR1] gi|237879830|gb|ACR32162.1| Response regulator, NarL-family protein [Burkholderia glumae BGR1] Length = 238 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + L+ RE L + G T+ EI+E L LS TV ++ + KL +R Sbjct: 166 LPSRDGAPPVRLSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRT 225 Query: 223 QAIAKAIRFGYI 234 QA+ +A G + Sbjct: 226 QAVFEARAHGLL 237 >gi|242280104|ref|YP_002992233.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122998|gb|ACS80694.1| transcriptional regulator, LuxR family [Desulfovibrio salexigens DSM 2638] Length = 406 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L G +E+A +L ++ +T + Y KL+ + + I A+R G Sbjct: 346 LSPREYQVFLLLIQGKRIKEVANELDITGNTASTYRSRIMKKLNISSITELIQYAMRQGL 405 Query: 234 I 234 I Sbjct: 406 I 406 >gi|325970171|ref|YP_004246362.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324025409|gb|ADY12168.1| two component transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 227 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 E + + LT +E +QL G G +++EI ++ S TV Y+ Sbjct: 139 RLATTPFRSMQEPDE----TFKALTAQELRIMQLIGKGLSNKEIMTEVNFSEGTVRNYIS 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KLD +R Q AI+ G Sbjct: 195 NILKKLDLRDRTQIAILAIQSGL 217 >gi|299141082|ref|ZP_07034220.1| transcriptional regulator [Prevotella oris C735] gi|298578048|gb|EFI49916.1| transcriptional regulator [Prevotella oris C735] Length = 212 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 42/98 (42%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + A + + Q + + L + + +S LT E L+ G T+ EIAE Sbjct: 108 QEIREALDYAVRGRRFICQRMAEMLLVPMETASNRAKLTPTENEILKDIALGMTTREIAE 167 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 K S HTVN + + KL +A A+R G + Sbjct: 168 KRFSSFHTVNTHRKNIFRKLGVNTIHEATKYALRAGLV 205 >gi|297160212|gb|ADI09924.1| erythropoiesis-stimulating protein [Streptomyces bingchenggensis BCW-1] Length = 339 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 18/231 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 + ++ S + + RL + + + + + D + Sbjct: 114 VDVEELSGIDMVRIRLEELAHDCTSEIMEF-----TTGGGQSAESRQASRPIDQGLLERG 168 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ--LSVRLEGGLLPFAGIAFPVR 123 + Y + + H P + T + + S+ L + P Sbjct: 169 VRMRCVYLESVVNH------PQTVSYLDWLTGLGCRVRVVPSLPLRMVVFDRQAAVVPSN 222 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G ++ L+ A + E + LT + + L Sbjct: 223 PEDTAVGALLLRGSGLVSALCALFEHIWEEAPPFGATRRRDEDT-----GLTSQARAVLS 277 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+T E +A K+G+SV T +L A +R QA A G++ Sbjct: 278 LLAQGHTDEVVARKMGISVRTARRITAELMTQLGARSRFQAGVIAGERGWL 328 >gi|291299253|ref|YP_003510531.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568473|gb|ADD41438.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 228 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIA 195 ++ E ++ V + ++ +TERE L L G ++ EIA Sbjct: 121 RVVANGESLLAPSVTRRLVAEFVARPHESTVASTDLAAVTEREREVLTLVARGLSNTEIA 180 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+L LS+ TV ++G KL A +R Q + A G + Sbjct: 181 ERLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGLV 219 >gi|170725009|ref|YP_001759035.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810356|gb|ACA84940.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 221 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 6/93 (6%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIA 195 E+ + +L + + LT RE + + L G ++EIA Sbjct: 118 EGELYFDRQLISQVFSRLVRKLDSANDTLQDSAVMMQMLTSRERTIISLVSSGARNKEIA 177 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L +S HTV A++ S K + NR++ + A Sbjct: 178 HRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|320333696|ref|YP_004170407.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754985|gb|ADV66742.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 214 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEK 197 + E +++A V+ DF + + S L ERET+ L+L GY++++IA + Sbjct: 116 RVAGGEALLDADM-AQNVLDDFRDKREVLPSEKHADLNERETTILKLLAQGYSNQDIALR 174 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S TV L KL NR QA AIR G Sbjct: 175 LDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|315444762|ref|YP_004077641.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] gi|315263065|gb|ADT99806.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L +R+ LT++E L L G+G T+++IA ++ L+ TV Sbjct: 122 RSLLDNRAAAALMAKLRGEGERTDPLSGLTDQERVLLDLLGEGLTNKQIAARMFLAEKTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAK 227 Y+ KL R QA Sbjct: 182 KNYVSRLLAKLGMERRTQAAVF 203 >gi|302522327|ref|ZP_07274669.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302431222|gb|EFL03038.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 265 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ +IA L +S TV ++ + K +R QA+ A G Sbjct: 197 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 256 Query: 234 I 234 + Sbjct: 257 V 257 >gi|228991209|ref|ZP_04151167.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] gi|228768433|gb|EEM17038.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] Length = 438 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ ++ + KK LT RE L +G +EIA KL LS TV Y S Sbjct: 359 VATRLFKEYSSMPKK---PPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASS 415 Query: 212 ATVKLDAVNRIQAIAKAI 229 +KL R +A+ KA+ Sbjct: 416 IYMKLQVSGRGEAVKKAL 433 >gi|167837198|ref|ZP_02464081.1| nitrate/nitrite response regulator protein NarL [Burkholderia thailandensis MSMB43] Length = 90 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 21 DQLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVYAVER 80 Query: 232 GY 233 G Sbjct: 81 GL 82 >gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 226 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 9/223 (4%) Query: 14 LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + ++ F + + +AL++ + + + D L Sbjct: 8 VDDEPGVREAVSAYLEDSGFEVTAVANAQAALEYLETHVPDVIITDIMMPQMDGYAFLET 67 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 L H + + + + + L P +A ++ + Sbjct: 68 VRQQPHLSHIPVIF--LTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAI-IKNLLRRQA 124 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + + ++ + +LT RE S LQL G Sbjct: 125 A---ARDEAEPNLAELAQQIAELRAMLVQQGKRHPTAPPIQLDLTPREASVLQLVVKGLM 181 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++EIA +L SV + Y+ VK +R + + A+ G Sbjct: 182 NKEIASQLNTSVRNIEKYVSRLFVKTGTSSRTELVRFALEHGL 224 >gi|238795683|ref|ZP_04639197.1| Two-component response regulator [Yersinia mollaretii ATCC 43969] gi|238720409|gb|EEQ12211.1| Two-component response regulator [Yersinia mollaretii ATCC 43969] Length = 210 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|313887441|ref|ZP_07821130.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica PR426713P-I] gi|312923083|gb|EFR33903.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica PR426713P-I] Length = 201 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + +I+ Q T+ LE + + + L++RE + G T++EIA+ L L Sbjct: 103 IEPQSLIQLIQEAEQPDTESLESEEAKQTP---LSQRECEVVTWVARGLTNKEIADVLHL 159 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTV + + KLD + A+ I Sbjct: 160 SPHTVVTHRRNIAAKLDIHSPSGLTIYALMNNLI 193 >gi|238792677|ref|ZP_04636309.1| Two-component response regulator [Yersinia intermedia ATCC 29909] gi|238728033|gb|EEQ19555.1| Two-component response regulator [Yersinia intermedia ATCC 29909] Length = 210 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 NHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|238757839|ref|ZP_04619021.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236] gi|238703824|gb|EEP96359.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236] Length = 211 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L+L DGYT+ I E+L +SV TV + + KL+ + + + R Sbjct: 147 AEILTPRERQILRLIADGYTNRLIGERLCISVKTVETHRLNIMRKLNVHKVTELLNCSRR 206 Query: 231 FGY 233 G Sbjct: 207 LGL 209 >gi|291299028|ref|YP_003510306.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568248|gb|ADD41213.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 151 GACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 G +VI F R+ +LT RET L G +++EIAE+L +S TV Sbjct: 131 GVTRRVIDRFTRGRHARTGEPHPGLDSLTARETEILGWVATGLSNDEIAERLVVSPATVR 190 Query: 207 AYLGSATVKLDAVNRIQAIAKAIR 230 ++G A +KL A +R Q + A R Sbjct: 191 THVGRAMMKLRARDRAQLVVIAYR 214 >gi|227549911|ref|ZP_03979960.1| possible nitrate/nitrite response regulator protein NarP [Corynebacterium lipophiloflavum DSM 44291] gi|227078007|gb|EEI15970.1| possible nitrate/nitrite response regulator protein NarP [Corynebacterium lipophiloflavum DSM 44291] Length = 215 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 27/65 (41%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L GYT +EI +L +SV TV + + K NR Q A Sbjct: 150 PLVDALTRRELEVLRLLARGYTYKEIGAQLFISVKTVETHASNILRKTQTSNRHQLTRWA 209 Query: 229 IRFGY 233 Sbjct: 210 ADRAL 214 >gi|193064557|ref|ZP_03045637.1| transcriptional regulator CsgD [Escherichia coli E22] gi|192927809|gb|EDV82423.1| transcriptional regulator CsgD [Escherichia coli E22] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|119714199|ref|YP_919341.1| response regulator receiver [Nocardioides sp. JS614] gi|119526108|gb|ABL79478.1| response regulator receiver [Nocardioides sp. JS614] Length = 215 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 37/74 (50%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL + ++ +LT RE L L G+++ EIA +L + TV ++ KL + Sbjct: 142 RELRPEVAARLADLTSRERDVLVLLAQGHSNAEIAARLVVGEGTVKTHVAHVLAKLGVRD 201 Query: 221 RIQAIAKAIRFGYI 234 R+QA+ A G + Sbjct: 202 RLQAVVSAFNAGVV 215 >gi|157374008|ref|YP_001472608.1| response regulator [Shewanella sediminis HAW-EB3] gi|157316382|gb|ABV35480.1| Response regulator containing a CheY-like protein receiver domain and an HTH DNA-binding domain-like protein [Shewanella sediminis HAW-EB3] Length = 321 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 31/77 (40%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + D + + + LT RE + G T ++IA L LS TV+ +L Sbjct: 236 FNQTRMGDLYRISLRIKNQLDELTTREKQIVAGVCKGGTFKQIARDLELSPSTVSNHLYR 295 Query: 212 ATVKLDAVNRIQAIAKA 228 +KL R + I A Sbjct: 296 IYMKLGIHTRSELILIA 312 >gi|33867217|ref|NP_898775.1| putative response regulator (IpbT) [Rhodococcus erythropolis] gi|33669051|gb|AAP74045.1| putative response regulator (IpbT) [Rhodococcus erythropolis] Length = 209 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ RE ++L G T+ EIAE+L +S TV ++ S KL R + A Sbjct: 146 DSLSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDA 205 Query: 232 GYI 234 G + Sbjct: 206 GLL 208 >gi|119773784|ref|YP_926524.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119766284|gb|ABL98854.1| two component transcriptional regulator, LuxR family [Shewanella amazonensis SB2B] Length = 209 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153 L + + V ++ ++++E H Sbjct: 69 LNGLRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKHAMLGHRVI 128 Query: 154 YQVITDFL---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + ++L + + LT RE L+ +G ++ I+E+L +S TV ++ Sbjct: 129 SEAVEEYLFELKNATDENEWIDALTPRELQILEQLAEGLSNRLISEQLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|329948190|ref|ZP_08295062.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328522923|gb|EGF50028.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 215 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE +QL G ++ EIA L + TV ++L K+ A +R+QA+ A R G Sbjct: 155 LTEREREVIQLLASGMSNAEIAAALVVETSTVKSHLTRILPKIGARDRVQAVVWAYRNGL 214 >gi|326385152|ref|ZP_08206820.1| two-component transcriptional regulatory protein [Gordonia neofelifaecis NRRL B-59395] gi|326196117|gb|EGD53323.1| two-component transcriptional regulatory protein [Gordonia neofelifaecis NRRL B-59395] Length = 217 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 41/83 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + A ++ + ++ + + T++E + L L G+G T+ +IA+++ L+ TV Y+ Sbjct: 128 NRAAAVLMERLRKQQEQDAGPLADFTQQERTLLALLGEGLTNRQIADRMHLAEKTVKNYV 187 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 KL R QA A R G Sbjct: 188 SRLLTKLGMERRTQAAVFATRIG 210 >gi|291085584|ref|ZP_06571117.1| putative csgAB operon transcriptional regulatory protein [Citrobacter youngae ATCC 29220] gi|291071350|gb|EFE09459.1| putative csgAB operon transcriptional regulatory protein [Citrobacter youngae ATCC 29220] Length = 159 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 99 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 153 >gi|284990973|ref|YP_003409527.1| LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064218|gb|ADB75156.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 316 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 7/159 (4%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 P I + +A P+R+G YV+ + Sbjct: 114 SSAPQILGRVPRAVAGPRLRAEWSAFARPFGITHQLALPLRVGQGIESYVVSRPDDDYDD 173 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIA 195 + + A + A + LT RE + L+L G+G T++ IA Sbjct: 174 ADADLAALVVPALAALVRQHRVLRDVPAEQYDCAYGIRLTRREFAVLRLLGEGLTAQAIA 233 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L S TV+ +L KL +R+ A+ +A G + Sbjct: 234 RRLRTSPRTVHKHLEHLYRKLGVRDRLMAVQRARDAGLL 272 >gi|256381033|ref|YP_003104693.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925336|gb|ACU40847.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 219 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 6/132 (4%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + + V+ G ++E L+ A + + +R Sbjct: 82 VLSASGEHDDVLEAVKAGASGYLVKSASAEELVEAVNRTAAGDAVFTSGLAGLVLGEYRR 141 Query: 168 SSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +AA LT+RET L+L G T+ +IA +L +S TV ++ S KL NR Sbjct: 142 MAAAPDEVDRPQLTDRETEVLRLVAKGLTARQIATRLVISHRTVENHVQSTLRKLQLHNR 201 Query: 222 IQAIAKAIRFGY 233 ++ AI G Sbjct: 202 VELARYAIEHGL 213 >gi|160895160|ref|ZP_02075933.1| hypothetical protein CLOL250_02720 [Clostridium sp. L2-50] gi|156863194|gb|EDO56625.1| hypothetical protein CLOL250_02720 [Clostridium sp. L2-50] Length = 260 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 29/220 (13%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L I+ I + Y +S + N D D DI + + G Sbjct: 44 LEQIKTVIDFDSADFYLASSNEKENLERP---VFLNCDEDLSDIYENMDYSRG------I 94 Query: 81 NSGLLPIIWQSIQEETVIES-SGQLSVRLEGGLLPFAGI--AFPVRLGFHKNGYVIFTSE 137 ++++ + + + R+ + F F + T Sbjct: 95 MFSGRSMVYRETDIISDEKRVQTEYYQRVYKPNNWHYALQMIFGRNKHFLGVVTLYRTIG 154 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------------LTERETSCLQ 183 E + + L + R++ + LT+RE + LQ Sbjct: 155 KEDFTYEDVFLMDMLKDHM---AYRLSQDRNNQMTSQEKLTLTQAVKTYDLTKREQTILQ 211 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L G + EI + L ++V+T+ ++ + KL NR+Q Sbjct: 212 LLLQGMENTEICDHLSITVNTLKKHILNIYRKLGIRNRVQ 251 >gi|187478442|ref|YP_786466.1| two-component response regulator [Bordetella avium 197N] gi|115423028|emb|CAJ49559.1| putative two-component response regulator [Bordetella avium 197N] Length = 225 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 39/84 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ +F ++ L+ RE L+L G + EIAE+L LS +TV ++ Sbjct: 141 FLARRLLHEFRTPLVGQADNTGPLSPREAQILRLVASGLGNREIAEQLHLSRYTVERHVK 200 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R QAI A G + Sbjct: 201 HVYRKLLVSSRTQAIHAARVRGLL 224 >gi|160895667|ref|YP_001561249.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361251|gb|ABX32864.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 339 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 7/98 (7%) Query: 141 LANEVIIEAHGACYQVITD--FLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEE 193 ++ H + L ++ AAR L T RET L G T+ + Sbjct: 236 ADGRQLLARHMGASGLGESMVLLSHEAPQTPAARRLQQVALTPRETEVLSWLSKGKTNRD 295 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 IA+ LG+S TVN +L KL R A A A + Sbjct: 296 IADILGMSPRTVNKHLEHIFEKLGVETRTAAAAVAGQL 333 >gi|91786900|ref|YP_547852.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696125|gb|ABE42954.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 177 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L++R+ L + G ++ +IAE+L +S HTV +L +L+ +R Sbjct: 105 ELEPESATPTEKLSKRQKQLLVMLDKGMSNRDIAEELQISEHTVKVHLWRLFRRLNVKSR 164 Query: 222 IQAIAKAIRFGYI 234 QA A G + Sbjct: 165 SQASHLARTQGLL 177 >gi|56413870|ref|YP_150945.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168244733|ref|ZP_02669665.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264076|ref|ZP_02686049.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467083|ref|ZP_02700925.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444624|ref|YP_002040395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450147|ref|YP_002045140.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197362793|ref|YP_002142430.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128127|gb|AAV77633.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|154269337|gb|ABS72185.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden] gi|194403287|gb|ACF63509.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408451|gb|ACF68670.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195630363|gb|EDX48989.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094270|emb|CAR59776.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336437|gb|EDZ23201.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347328|gb|EDZ33959.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|327481896|gb|AEA85206.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 836 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 154 YQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +++ E +++ L+ RE + L+L G +++EIAE+L +S+HTV + Sbjct: 755 QRLLRYEREPETTQAATEETVLSNRELTVLRLIAQGCSNQEIAEQLFISLHTVKTHARRI 814 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL R QA+AKA ++ Sbjct: 815 NTKLGVARRTQAVAKAKALAWL 836 >gi|313903315|ref|ZP_07836707.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313466403|gb|EFR61925.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 256 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT R+ LQL G ++ EIA +L LS TV + +L +R+Q Sbjct: 180 RPAPAEQGEPLTPRQVEVLQLLARGVSNREIAARLHLSEGTVKNLVSEIYARLQVRDRVQ 239 Query: 224 AIAKAIRFGYI 234 A+ +A G++ Sbjct: 240 AVLRA--RGWL 248 >gi|296330376|ref|ZP_06872857.1| two-component response regulator (YvfT) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676019|ref|YP_003867691.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152644|gb|EFG93512.1| two-component response regulator (YvfT) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414263|gb|ADM39382.1| two-component response regulator (paired with YvfT) [Bacillus subtilis subsp. spizizenii str. W23] Length = 200 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+LA G T+++I +L LS TV Y+ KLDA NR +A + A G Sbjct: 139 PLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLDAKNRTEAASIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|284992446|ref|YP_003411000.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065691|gb|ADB76629.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 217 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 20/162 (12%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148 + + RL +A + ++ + ++E Sbjct: 56 DLHMPVLDGIAATRRLRVEQPGVRVLALTTFDDDEDVFAALRAGALGYLLKDVSADRLVE 115 Query: 149 AHGACYQ------------VITDFLELFK----KRSSAARNLTERETSCLQLAGDGYTSE 192 A A + V+ F +L + L++RE L+L DG ++ Sbjct: 116 AVQAAARGESVLQPSVAAKVVARFAQLDDAPRSRPQPLVVPLSDRELDVLRLLADGRSNR 175 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L L+ TV ++ + KL A +R QA +A + Sbjct: 176 EIATALFLAEGTVKNHVTNVLGKLGARDRTQAALRARALDLL 217 >gi|54022748|ref|YP_116990.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014256|dbj|BAD55626.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 35/79 (44%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + LT RE L+L +GY+S IA+ L +SV TV+ + + K Sbjct: 139 IREWLQRTRAGTPPPDNILTAREEEILKLVAEGYSSRGIADTLVISVKTVDRHRANILQK 198 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R+ AIR G I Sbjct: 199 LGLRDRLALTRYAIRVGLI 217 >gi|332299624|ref|YP_004441545.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica DSM 20707] gi|332176687|gb|AEE12377.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica DSM 20707] Length = 201 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + +I+ Q T+ LE + + + L++RE + G T++EIA+ L L Sbjct: 103 IEPQSLIQLIQEAEQPDTESLESEEAKQTP---LSQRECEVVTWVARGLTNKEIADVLHL 159 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTV + + KLD + A+ I Sbjct: 160 SPHTVVTHRRNIAAKLDIHSPSGLTIYALMNNLI 193 >gi|319795298|ref|YP_004156938.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597761|gb|ADU38827.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 198 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 40/87 (45%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E A ++ E + A+ L++R+T + + G ++ +IA L +S HTV Sbjct: 110 ELAAALRGLLMAGSEEADEPPLASSKLSKRQTQLIAMLDKGMSNRDIATDLEISEHTVKV 169 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +L +R QA+ A G + Sbjct: 170 HLWRLFRRLGVKSRTQALHYARTNGLL 196 >gi|302867924|ref|YP_003836561.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315505671|ref|YP_004084558.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570783|gb|ADL46985.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412290|gb|ADU10407.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+L G ++ E+AE L LS TV ++ KL +R+QA+ A G Sbjct: 155 LTRRETEVLRLLAGGLSNAELAEALHLSEATVKTHVARILAKLRLRDRVQAVVVAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|330999811|ref|ZP_08323516.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|329573814|gb|EGG55403.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 211 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE +L +G +++IA++LG++ TV + + K N A+ A + Sbjct: 145 SLSPREQETARLIAEGLLNKQIADRLGITERTVQVHRANVFSKFGVRN---AVQFAQKLM 201 Query: 233 YI 234 I Sbjct: 202 LI 203 >gi|306832609|ref|ZP_07465748.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304425217|gb|EFM28344.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 227 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ E +Q G G +++EIA KL LS TV YL S KL+ +R Q A++ G Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTG 215 >gi|256378541|ref|YP_003102201.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922844|gb|ACU38355.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 226 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + +T RE + L G +++ IA L LS TV ++ A K Sbjct: 139 AFVAQSRPPAVAAPGLDLVTGREREVMVLVAHGMSNDAIARHLFLSPLTVRTHVNRAMAK 198 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L A +R Q + A + + Sbjct: 199 LGARDRAQLVVIAYQNRLV 217 >gi|209518938|ref|ZP_03267749.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. H160] gi|209500661|gb|EEA00706.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. H160] Length = 913 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 13/163 (7%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA---------GIAFPVRLGFHKNGY 131 L + W S + + V++ + G ++ Sbjct: 752 LRTTLALAWMSAGQVSEAIEVFGEVVKVAAPAGIYQSILDQGAGIGTLLQAMRNAARSAA 811 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + R L+ RE+ + L G ++ Sbjct: 812 GDPARTKDAANYIERLCDGWRALYQPASHTQRDADR----EALSARESEIVGLIAQGQSN 867 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA LG++ TV +++ S +KL+ R A+++A G + Sbjct: 868 KEIARSLGIAPETVKSHVKSIFLKLEVDKRAHAVSRAQALGLL 910 >gi|331646293|ref|ZP_08347396.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M605] gi|320196482|gb|EFW71105.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli WV_060327] gi|330910850|gb|EGH39360.1| transcriptional regulator CsgD for 2nd curli operon [Escherichia coli AA86] gi|331045045|gb|EGI17172.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M605] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|295394642|ref|ZP_06804861.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972535|gb|EFG48391.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 228 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +A G V+ + E + + LTERE + L G ++ EIA LG+S TV Sbjct: 135 DAAGFSRAVVAN--EAPGQTPADLYGLTEREEAILTQLCRGQSNYEIARFLGISEGTVKV 192 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFG 232 ++ S K + +R++ + +A G Sbjct: 193 HITSIMKKANVRSRLELVVQAFNSG 217 >gi|291537551|emb|CBL10663.1| ATP-dependent transcriptional regulator [Roseburia intestinalis M50/1] Length = 787 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 14/147 (9%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 W+ + ++ +R V + + A + Sbjct: 651 RWRERLTAALDAATEYRFIR-----------TVSVYGTAV-LPLLEALNWDGDKAWSKRL 698 Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + + R + LT E L L ++ EIA+ + + + TV Sbjct: 699 MAAVRMQAAF--YPHFLESRLAPGEELTPTELQILHLICADKSNAEIAQIMDVKLPTVKT 756 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KLD R +A A + I Sbjct: 757 HVSHILDKLDVKRRAEARTAAKKLRLI 783 >gi|302540802|ref|ZP_07293144.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302458420|gb|EFL21513.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 221 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ + A+ LTERE + L G G ++EEIA +L +S T + Sbjct: 130 GVTRRLIAEFAARSKEPAPASVLAELTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|160934711|ref|ZP_02082097.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753] gi|156866164|gb|EDO59536.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753] Length = 212 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++ K AAR ++ RE + L G +++EIAE L LS TV YL + KL Sbjct: 133 LPELMQSGDKFDFAARGVSPRELDVISLVAKGLSNKEIAEALFLSEGTVRNYLSAVLDKL 192 Query: 217 DAVNRIQAIAK 227 + +R Q Sbjct: 193 ELRDRTQLAVF 203 >gi|119469813|ref|ZP_01612651.1| putative csg operon transcription regulator (LuxR family) protein [Alteromonadales bacterium TW-7] gi|119446796|gb|EAW28068.1| putative csg operon transcription regulator (LuxR family) protein [Alteromonadales bacterium TW-7] Length = 229 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 10/101 (9%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LTERETSCLQLAGDGY 189 + ++ + + +D L + +S + LT+RE S + L G Sbjct: 119 RVTSDELWFTRKVISKAFSDILLVASSFNSLKDDITLKQDDYAHLTKREKSVIHLIAQGA 178 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ IA+KL +S HTV +L SA K ++ NRI+ A R Sbjct: 179 SNNTIADKLNISDHTVKTHLYSAFKKTNSRNRIELANWAQR 219 >gi|15801157|ref|NP_287174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 EDL933] gi|15830671|ref|NP_309444.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. Sakai] gi|26247175|ref|NP_753215.1| DNA-binding transcriptional regulator CsgD [Escherichia coli CFT073] gi|30062564|ref|NP_836735.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a str. 2457T] gi|56479799|ref|NP_706950.2| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a str. 301] gi|91210188|ref|YP_540174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UTI89] gi|110641216|ref|YP_668946.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 536] gi|110805049|ref|YP_688569.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 5 str. 8401] gi|117623229|ref|YP_852142.1| DNA-binding transcriptional regulator CsgD [Escherichia coli APEC O1] gi|157155649|ref|YP_001462271.1| DNA-binding transcriptional regulator CsgD [Escherichia coli E24377A] gi|168747192|ref|ZP_02772214.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4113] gi|168754516|ref|ZP_02779523.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4401] gi|168760623|ref|ZP_02785630.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4501] gi|168767694|ref|ZP_02792701.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4486] gi|168773880|ref|ZP_02798887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4196] gi|168783565|ref|ZP_02808572.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4076] gi|168799314|ref|ZP_02824321.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC508] gi|191166943|ref|ZP_03028767.1| transcriptional regulator CsgD [Escherichia coli B7A] gi|193069453|ref|ZP_03050407.1| transcriptional regulator CsgD [Escherichia coli E110019] gi|194432391|ref|ZP_03064678.1| transcriptional regulator CsgD [Shigella dysenteriae 1012] gi|195935427|ref|ZP_03080809.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4024] gi|208809483|ref|ZP_03251820.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4206] gi|208815293|ref|ZP_03256472.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4045] gi|208822315|ref|ZP_03262634.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4042] gi|209396459|ref|YP_002269887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4115] gi|209918293|ref|YP_002292377.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SE11] gi|215486249|ref|YP_002328680.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O127:H6 str. E2348/69] gi|217328252|ref|ZP_03444334.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. TW14588] gi|218553618|ref|YP_002386531.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI1] gi|218557921|ref|YP_002390834.1| DNA-binding transcriptional regulator CsgD [Escherichia coli S88] gi|218688993|ref|YP_002397205.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ED1a] gi|218694575|ref|YP_002402242.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 55989] gi|218704448|ref|YP_002411967.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UMN026] gi|227886606|ref|ZP_04004411.1| LuxR family protein [Escherichia coli 83972] gi|237706978|ref|ZP_04537459.1| transcriptional regulator for 2nd curli operon [Escherichia sp. 3_2_53FAA] gi|254792423|ref|YP_003077260.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. TW14359] gi|256018703|ref|ZP_05432568.1| DNA-binding transcriptional regulator CsgD [Shigella sp. D9] gi|260854523|ref|YP_003228414.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O26:H11 str. 11368] gi|260867403|ref|YP_003233805.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O111:H- str. 11128] gi|261227055|ref|ZP_05941336.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. FRIK2000] gi|261256289|ref|ZP_05948822.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O157:H7 str. FRIK966] gi|291282059|ref|YP_003498877.1| CsgD [Escherichia coli O55:H7 str. CB9615] gi|293404327|ref|ZP_06648321.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1412] gi|293433333|ref|ZP_06661761.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088] gi|298380106|ref|ZP_06989711.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1302] gi|300816738|ref|ZP_07096958.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300821183|ref|ZP_07101332.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300899554|ref|ZP_07117793.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300902427|ref|ZP_07120409.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300922561|ref|ZP_07138662.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1] gi|300935178|ref|ZP_07150204.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300974342|ref|ZP_07172554.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|300982659|ref|ZP_07176243.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|301023209|ref|ZP_07187008.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|301051178|ref|ZP_07198008.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|301305026|ref|ZP_07211128.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|301328594|ref|ZP_07221655.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1] gi|306814112|ref|ZP_07448285.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101] gi|307310181|ref|ZP_07589831.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|309794973|ref|ZP_07689393.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|331652090|ref|ZP_08353109.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M718] gi|331657094|ref|ZP_08358056.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA206] gi|331662440|ref|ZP_08363363.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA143] gi|331667434|ref|ZP_08368298.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA271] gi|331672560|ref|ZP_08373349.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA280] gi|331676827|ref|ZP_08377523.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H591] gi|331682538|ref|ZP_08383157.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H299] gi|332279774|ref|ZP_08392187.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9] gi|12514569|gb|AAG55786.1|AE005314_14 putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. EDL933] gi|26107576|gb|AAN79775.1|AE016759_49 Probable csgAB operon transcriptional Regulatory protein [Escherichia coli CFT073] gi|13360877|dbj|BAB34840.1| transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. Sakai] gi|30040810|gb|AAP16541.1| probable csgAB operon transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|56383350|gb|AAN42657.2| probable csgAB operon transcriptional regulatory protein [Shigella flexneri 2a str. 301] gi|91071762|gb|ABE06643.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli UTI89] gi|110342808|gb|ABG69045.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli 536] gi|110614597|gb|ABF03264.1| Probable csgAB operon transcriptional Regulatory protein [Shigella flexneri 5 str. 8401] gi|115512353|gb|ABJ00428.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli APEC O1] gi|157077679|gb|ABV17387.1| transcriptional regulator CsgD [Escherichia coli E24377A] gi|171986605|gb|ACB59284.1| CsgD [Escherichia coli] gi|171986613|gb|ACB59291.1| CsgD [Escherichia coli] gi|171986621|gb|ACB59298.1| CsgD [Escherichia coli] gi|171986629|gb|ACB59305.1| CsgD [Escherichia coli] gi|187770420|gb|EDU34264.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4196] gi|188018009|gb|EDU56131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4113] gi|188999071|gb|EDU68057.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4076] gi|189358200|gb|EDU76619.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4401] gi|189363208|gb|EDU81627.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4486] gi|189368715|gb|EDU87131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4501] gi|189378335|gb|EDU96751.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC508] gi|190903055|gb|EDV62780.1| transcriptional regulator CsgD [Escherichia coli B7A] gi|192957201|gb|EDV87650.1| transcriptional regulator CsgD [Escherichia coli E110019] gi|194419278|gb|EDX35360.1| transcriptional regulator CsgD [Shigella dysenteriae 1012] gi|208729284|gb|EDZ78885.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4206] gi|208731941|gb|EDZ80629.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4045] gi|208737800|gb|EDZ85483.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4042] gi|209157859|gb|ACI35292.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4115] gi|209773728|gb|ACI85176.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773730|gb|ACI85177.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773732|gb|ACI85178.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773734|gb|ACI85179.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773736|gb|ACI85180.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209911552|dbj|BAG76626.1| putative transcriptional regulator [Escherichia coli SE11] gi|215264321|emb|CAS08678.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli O127:H6 str. E2348/69] gi|217318679|gb|EEC27105.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. TW14588] gi|218351307|emb|CAU97012.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli 55989] gi|218360386|emb|CAQ97938.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli IAI1] gi|218364690|emb|CAR02380.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli S88] gi|218426557|emb|CAR07385.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli ED1a] gi|218431545|emb|CAR12423.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli UMN026] gi|222032794|emb|CAP75533.1| csgAB operon transcriptional regulatory [Escherichia coli LF82] gi|226898188|gb|EEH84447.1| transcriptional regulator for 2nd curli operon [Escherichia sp. 3_2_53FAA] gi|227836810|gb|EEJ47276.1| LuxR family protein [Escherichia coli 83972] gi|254591823|gb|ACT71184.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. TW14359] gi|257753172|dbj|BAI24674.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O26:H11 str. 11368] gi|257763759|dbj|BAI35254.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O111:H- str. 11128] gi|281178149|dbj|BAI54479.1| putative transcriptional regulator [Escherichia coli SE15] gi|281600449|gb|ADA73433.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 2002017] gi|284920864|emb|CBG33927.1| probable csgab operon transcriptional regulator [Escherichia coli 042] gi|290761932|gb|ADD55893.1| CsgD [Escherichia coli O55:H7 str. CB9615] gi|291324152|gb|EFE63574.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088] gi|291428913|gb|EFF01938.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1412] gi|294494087|gb|ADE92843.1| transcriptional regulator CsgD [Escherichia coli IHE3034] gi|298279804|gb|EFI21312.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1302] gi|300297199|gb|EFJ53584.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|300307124|gb|EFJ61644.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|300356825|gb|EFJ72695.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300397133|gb|EFJ80671.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|300405459|gb|EFJ88997.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300410585|gb|EFJ94123.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|300421107|gb|EFK04418.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1] gi|300459572|gb|EFK23065.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300526482|gb|EFK47551.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300530512|gb|EFK51574.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300839744|gb|EFK67504.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|300844986|gb|EFK72746.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1] gi|305852749|gb|EFM53197.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101] gi|306909899|gb|EFN40393.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|307553043|gb|ADN45818.1| csgAB operon transcriptional regulatory protein [Escherichia coli ABU 83972] gi|307627490|gb|ADN71794.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UM146] gi|308121277|gb|EFO58539.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|312945603|gb|ADR26430.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O83:H1 str. NRG 857C] gi|313650706|gb|EFS15107.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|315060319|gb|ADT74646.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli W] gi|315253837|gb|EFU33805.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1] gi|315287407|gb|EFU46818.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3] gi|315291086|gb|EFU50449.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1] gi|315296668|gb|EFU55963.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3] gi|320189720|gb|EFW64376.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli O157:H7 str. EC1212] gi|320200932|gb|EFW75516.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli EC4100B] gi|320637492|gb|EFX07292.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. G5101] gi|320643053|gb|EFX12254.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H- str. 493-89] gi|320648510|gb|EFX17165.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H- str. H 2687] gi|320653825|gb|EFX21899.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659305|gb|EFX26874.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7 str. USDA 5905] gi|320664439|gb|EFX31590.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. LSU-61] gi|323175733|gb|EFZ61327.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1180] gi|323190548|gb|EFZ75820.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli RN587/1] gi|323379120|gb|ADX51388.1| transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323947348|gb|EGB43354.1| luxR family protein Bacterial regulatory protein [Escherichia coli H120] gi|323953272|gb|EGB49138.1| luxR family protein regulatory protein [Escherichia coli H252] gi|323958052|gb|EGB53762.1| luxR family protein regulatory protein [Escherichia coli H263] gi|323966982|gb|EGB62408.1| luxR family protein regulatory protein [Escherichia coli M863] gi|323976586|gb|EGB71674.1| luxR family protein regulatory protein [Escherichia coli TW10509] gi|324007878|gb|EGB77097.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2] gi|324013311|gb|EGB82530.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1] gi|324017459|gb|EGB86678.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3] gi|324117387|gb|EGC11294.1| luxR family protein regulatory protein [Escherichia coli E1167] gi|326339260|gb|EGD63074.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli O157:H7 str. 1125] gi|326344780|gb|EGD68528.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli O157:H7 str. 1044] gi|327253435|gb|EGE65073.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli STEC_7v] gi|331050368|gb|EGI22426.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M718] gi|331055342|gb|EGI27351.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA206] gi|331060862|gb|EGI32826.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA143] gi|331065019|gb|EGI36914.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA271] gi|331070203|gb|EGI41569.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA280] gi|331075516|gb|EGI46814.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H591] gi|331080169|gb|EGI51348.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H299] gi|332088801|gb|EGI93913.1| putative csgAB operon transcriptional regulatory protein [Shigella boydii 5216-82] gi|332092876|gb|EGI97944.1| putative csgAB operon transcriptional regulatory protein [Shigella dysenteriae 155-74] gi|332102126|gb|EGJ05472.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9] gi|332758809|gb|EGJ89125.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 4343-70] gi|332759950|gb|EGJ90251.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 2747-71] gi|332762241|gb|EGJ92509.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-671] gi|332767834|gb|EGJ98025.1| bacterial regulatory s, luxR family protein [Shigella flexneri 2930-71] gi|333005819|gb|EGK25336.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri VA-6] gi|333019711|gb|EGK38984.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-304] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|331699219|ref|YP_004335458.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953908|gb|AEA27605.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 1033 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 + + + + A L L A LT RE S L Sbjct: 918 RGEAAAELRCALATAVELGARPLAEAVRDLAGRAGLALDDAVRPRAGGAVLTPRERSVLG 977 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T+ ++ +L +S TV+ +L KL A +R +A++ A G + Sbjct: 978 LVAGGLTNRQVGAELFISEKTVSVHLSRVMAKLGAGSRTEAVSLAWSRGLL 1028 >gi|300694626|ref|YP_003750599.1| transcription regulator protein, luxr family [Ralstonia solanacearum PSI07] gi|299076663|emb|CBJ36001.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] Length = 252 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 13/207 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 ++ + + A + +Y + + + + Sbjct: 30 VRPIVGHHHLA--CGHGRTTSSGVAMDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWLAT 87 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA- 142 P+ + + E + + + A V + G +A Sbjct: 88 RRPVYF---DAASPWEGTDPVWLEKFVKHGLRNCAADAVFDEANCVGTYFSFHALPTIAE 144 Query: 143 -------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 ++ HGA + + +K S A LTERE L G G ++ EIA Sbjct: 145 GCLDATLRDLTPVLHGALLRAVASVENDLQKASQALATLTEREREVALLIGQGRSNAEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + S TV YL S K NR+ Sbjct: 205 QLVCKSESTVKHYLSSIMDKTGCENRV 231 >gi|318058792|ref|ZP_07977515.1| two-component system DNA-binding response regulator [Streptomyces sp. SA3_actG] gi|318075476|ref|ZP_07982808.1| two-component system DNA-binding response regulator [Streptomyces sp. SA3_actF] gi|333026609|ref|ZP_08454673.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746461|gb|EGJ76902.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 218 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G++ +EIA++L +SV TV +++ + KL NR + A Sbjct: 156 DKLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNRHELTRWAAAR 215 Query: 232 GYI 234 + Sbjct: 216 RLV 218 >gi|153010196|ref|YP_001371410.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562084|gb|ABS15581.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + + A +EL + +L+ RET L+ GDG+ + EIA KLGL Sbjct: 124 IRARLNLVARVKAISAHPAAMELEGEFI----HLSRRETEVLKEIGDGHKNGEIARKLGL 179 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTV+ Y+ + KL +R +A +AIR G + Sbjct: 180 SEHTVSDYVKAIYQKLSVSSRAEATREAIRRGLV 213 >gi|33863672|ref|NP_895232.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT 9313] gi|33635255|emb|CAE21580.1| possible DNA-binding response regulator [Prochlorococcus marinus str. MIT 9313] Length = 232 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 5/118 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNLTE 176 + +LA IE V+ K S NL+ Sbjct: 105 IEAHCDGLCAHELVGSGTLLAALSAIESDGTYLDSVVAGVLRHGRLGNGKSSRQIDNLSL 164 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G +++ IA++L LS+ TV +++ + KL A +R A+ A R G + Sbjct: 165 REGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAVVVAFRDGLV 222 >gi|312197193|ref|YP_004017254.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228529|gb|ADP81384.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 278 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT+RE L L +G ++ E A++L +S TV AYL S KL NR A+ A Sbjct: 213 AGYALTQRELEVLGLVAEGLSNAEAAQRLVVSPETVKAYLRSIRSKLGVSNRTAAVTVAR 272 Query: 230 RFGYI 234 R G + Sbjct: 273 RSGLL 277 >gi|229018500|ref|ZP_04175361.1| Two-component protein Kinase [Bacillus cereus AH1273] gi|229024758|ref|ZP_04181196.1| Two-component protein Kinase [Bacillus cereus AH1272] gi|228736532|gb|EEL87089.1| Two-component protein Kinase [Bacillus cereus AH1272] gi|228742774|gb|EEL92913.1| Two-component protein Kinase [Bacillus cereus AH1273] Length = 592 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +AI KA+ G I Sbjct: 565 YASTAYTKLGVRNKEEAILKALEIGII 591 >gi|167581294|ref|ZP_02374168.1| DNA-binding response regulator NarL [Burkholderia thailandensis TXDOH] Length = 86 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++ G +++EIA + ++ TV ++ + KL+ +R+Q A+ Sbjct: 17 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 76 Query: 232 GY 233 G Sbjct: 77 GL 78 >gi|157962120|ref|YP_001502154.1| two component LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847120|gb|ABV87619.1| two component transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 221 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT R+ LQL +GY++ EIA ++ +S+ TV + +L+ + + AIR Sbjct: 152 ELLTSRQRQILQLIAEGYSTREIALRMNVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRS 211 Query: 232 GYIC 235 IC Sbjct: 212 KLIC 215 >gi|37524816|ref|NP_928160.1| two-component response regulator. hexose phosphate transport system regulatory protein UhpA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784241|emb|CAE13110.1| Two-component response regulator. Hexose phosphate transport system regulatory protein UhpA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 210 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 11/160 (6%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFL 139 PI + ES L RL F I + G + ++ Sbjct: 47 PIDVAVMDIAMPDESGLHLLTRLRQKRPDFRTIILSIYDTTAFVQSALDAGACGYLTKRC 106 Query: 140 MLAN--EVIIEAHGACYQVITDFL---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + H + D L ++ +A + LT RE L +G + I Sbjct: 107 GPEELVQAVRSVHQGGCYLCADALKALRQTSQKVTALQVLTPREREIFDLLINGINVKTI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+L LS TV+ + + KL + I + A++ + Sbjct: 167 AEQLYLSHKTVHVHRANILSKLQCDSTIDLVHYALQHQIL 206 >gi|330809571|ref|YP_004354033.1| LuxR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377679|gb|AEA69029.1| putative transcriptional regulator, LuxR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 219 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 8/207 (3%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79 LH + A Y ++ L LH + D H Sbjct: 14 LHAFTQLVPVSRAAFYCVDRQLQV-----HDFSLHKMSGEMHRDYLD-NYRQFDPLHPRH 67 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI-AFPVRLGFHKNGYVIFTSEF 138 S L ++ + + F R G + + + Sbjct: 68 CMSSELAVVPLGLAMARQPRRDNHRYHDFLQRYGVVDVVEVFAHRDGQPQAAISLLRTAE 127 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + A ++ + +LT +E L G +++++A +L Sbjct: 128 QGVFTSQQLSQLSALQALLQLAVAHLPAHGDPLGDLTPKERQIAWLLRQGVSNKQLAREL 187 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + T+ +L K+ +R + + Sbjct: 188 EVGLPTIKTHLIHLFRKVGVSSRTELV 214 >gi|291085787|ref|ZP_06354060.2| transcriptional regulatory protein UhpA [Citrobacter youngae ATCC 29220] gi|291069848|gb|EFE07957.1| transcriptional regulatory protein UhpA [Citrobacter youngae ATCC 29220] Length = 230 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 13/154 (8%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIE 148 E+ L RL F I + + L E +++ Sbjct: 75 DIAMPDENGLSLLKRLRAQKPGFRAIILSIYDSPTFVQSALDAGASGYLTKRCGPEELVQ 134 Query: 149 A--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 A H C + L ++ + LT RE L G + +EIA KL L Sbjct: 135 AVRSVGMGGHYLCADAL-RALRGGEQPAQVLEVLTPREREVFDLLVKGDSVKEIAFKLDL 193 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV+ + + KL + I + A+ + Sbjct: 194 SHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 227 >gi|282898145|ref|ZP_06306138.1| Transcriptional Regulator with GAF sensor, LuxR family [Raphidiopsis brookii D9] gi|281196969|gb|EFA71872.1| Transcriptional Regulator with GAF sensor, LuxR family [Raphidiopsis brookii D9] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 65/232 (28%), Gaps = 34/232 (14%) Query: 11 SSSLQELSPRL------HLIQNRIK---ARNFALYTINSALDFPRRQQLICELHNYDLDS 61 + +L + + +Q + + +F ++ + + E+ Sbjct: 2 AKTLHSIFEAIAHVETEQELQQALMETISLHFGVHHWGISF-IEEQFLTGIEIPEIPAVC 60 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + + + ++ + + P Sbjct: 61 LEANPVGSY-----VVERHAPTHELLVLAPEDWKNFCTRHEHVM-------------TGP 102 Query: 122 VRLGFHKNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK----RSSAARNLT 175 + G + F + + + C + L K ++ LT Sbjct: 103 IVCDGRLVGTLNFARDPGSPPFNNNDLADLSALCIHLSAKIATLRVKWNMVKTMTECPLT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE QL G T+ EIA +L +S +TV L KL R + +AK Sbjct: 163 ARELEIAQLVAQGLTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVAK 214 >gi|320012105|gb|ADW06955.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTE 176 +R G ++ A ++ E + L S A LT Sbjct: 96 LRAGADGFLLKRARPAEIVNAVRLVAEGETLLFPAAVRQLAAEYGTSKAHAAMDRAALTT 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L+L G ++ EIA +L + V TV ++ S KL A +R QA+ A G++ Sbjct: 156 REAAVLRLMARGLSNSEIAAELVVGVETVKTHVSSVLAKLGARDRTQAVIAAYESGFV 213 >gi|205353119|ref|YP_002226920.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272900|emb|CAR37830.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|254382064|ref|ZP_04997426.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340971|gb|EDX21937.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 222 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 47/133 (35%) Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161 V + VR + + + +LA V Sbjct: 86 ADEYVYEALHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLIEEYTAATARPA 145 Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT RE L G G ++ EIA +L +S HTV +++G+ KL +R Sbjct: 146 GGPALSAERLEVLTARERETLLHLGRGRSNAEIAAELTVSEHTVKSHVGNVLAKLGLRDR 205 Query: 222 IQAIAKAIRFGYI 234 IQA+ A G I Sbjct: 206 IQAVICAYETGLI 218 >gi|15077445|gb|AAK83172.1|AF333038_14 putative two-component regulator [Streptomyces viridochromogenes] Length = 206 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L GY++ EIA LG++ TV A++ KL +R+QA A G Sbjct: 127 LSDRELQVFLLLSHGYSNREIAALLGVTERTVKAHMAQILAKLGVESRLQAGLVAFAHGL 186 >gi|21219585|ref|NP_625364.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|8744963|emb|CAB95289.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 221 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ ++ LTERE + L G G ++EEIA +L +S T + Sbjct: 130 GVTRRLIAEFAVRSKEPAAPGEMARLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|332533470|ref|ZP_08409333.1| nitrate/nitrite response regulator protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037017|gb|EGI73475.1| nitrate/nitrite response regulator protein [Pseudoalteromonas haloplanktis ANT/505] Length = 218 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 142 ANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +++ A Q D L L + LT+RE + + L G ++EIAE L + Sbjct: 123 RRDIMCNALNRMLQFNKDALHKLTEGDIEPV-KLTKREKAIISLMSKGSKNKEIAEDLSI 181 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 S HTV +L SA K NRI+ ++ A + Sbjct: 182 SPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|318059560|ref|ZP_07978283.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079903|ref|ZP_07987235.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 265 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ +IA L +S TV ++ + K +R QA+ A G Sbjct: 197 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 256 Query: 234 I 234 + Sbjct: 257 V 257 >gi|317507118|ref|ZP_07964879.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254612|gb|EFV13921.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 214 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + ++ + + +++ + + L +LTE+E L L G+G Sbjct: 113 GMELVSAVRAVGSGRSLLD--NRAAEALIRQLRAGTPDPGPLASLTEQERVLLDLIGEGL 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T+ +IAE++ L+ TV Y+ KL R QA A+R Sbjct: 171 TNRQIAERMFLAEKTVRNYVSKLLAKLGVERRTQAAVLAVR 211 >gi|311893888|dbj|BAJ26296.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 117 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G ++ E+A +L LS TV ++ KL +R QA+ A G Sbjct: 49 ALTPRELEVLALLGRGLSTTELAGELTLSEATVKTHVARIFAKLGLRDRAQAVVVAYETG 108 Query: 233 YI 234 + Sbjct: 109 LV 110 >gi|298251645|ref|ZP_06975448.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546237|gb|EFH80105.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1081 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 3/154 (1%) Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 LL ++ + + E + + + + + + L + +S + ++ Sbjct: 928 LLAVVHEMLGEHALAQDFFSAVLEYVRLEGYRSSVVRELPLLEPLLRTIAESSPAMSMSL 987 Query: 144 EVIIEAHGACY--QVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGL 200 + I+ A + D L L ++R+ A L+ RE L L G +++EIA +L + Sbjct: 988 QSILTAGSLNAPSTIQPDHLALLRERTRAGEQILSPREREVLLLLSTGASNQEIANQLII 1047 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV ++ + L NR QA+A+A + Sbjct: 1048 TLGTVKRHVNTILATLQVSNRTQAVARARELSLL 1081 >gi|261345944|ref|ZP_05973588.1| nitrate/nitrite response regulator protein NarL [Providencia rustigianii DSM 4541] gi|282566031|gb|EFB71566.1| nitrate/nitrite response regulator protein NarL [Providencia rustigianii DSM 4541] Length = 206 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 IE H + + L + LT RE L G + EI++ L +S TV Sbjct: 121 IEGHHVFSEKVYQHLITRHQSKDPLSTLTRRECEILHEMAAGLKNREISQLLFISEETVK 180 Query: 207 AYLGSATVKLDAVNRIQA 224 ++ + KL +R++A Sbjct: 181 VHIRNVLKKLRVRSRLEA 198 >gi|212638135|ref|YP_002314655.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559615|gb|ACJ32670.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 213 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 34/79 (43%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + LE LT RE ++L GYT+ +IA KL +S TV + + Sbjct: 131 HIPEERLEKMFAEKEPRSPLTNREREIVRLTFLGYTNNQIANKLKISPKTVENHKTNIMQ 190 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL + + I A++ Sbjct: 191 KLGIKEKHELIQYALKNHI 209 >gi|254438204|ref|ZP_05051698.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] gi|198253650|gb|EDY77964.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] Length = 204 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LTERE L+ +G +++EIA L + TV ++ + K+ NR QA Sbjct: 138 NPLADKLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALI 197 Query: 228 AIRFGY 233 Sbjct: 198 GREANL 203 >gi|153215381|ref|ZP_01949979.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|153829298|ref|ZP_01981965.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|229512672|ref|ZP_04402141.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21] gi|124114752|gb|EAY33572.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|148875198|gb|EDL73333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|229350349|gb|EEO15300.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21] Length = 214 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 RL L G + G++ ++ + + H + + Sbjct: 89 RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QAQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 Query: 227 K 227 Sbjct: 208 W 208 >gi|330470082|ref|YP_004407825.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813053|gb|AEB47225.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 225 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 R A LTERE L +G ++ EI +L +S TV + KL A Sbjct: 150 SAARPPRADRSTIGLTERELQVLLGMAEGRSNAEIGRELFVSEDTVKTHARRLFRKLGAR 209 Query: 220 NRIQAIAKAIRFGYI 234 +R A+A R G + Sbjct: 210 DRAHAVAAGFRAGLV 224 >gi|283781707|ref|YP_003372462.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440160|gb|ADB18602.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 211 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + ++ + LT+RE L+ G T+++IAE LG+S TV ++ K+ Sbjct: 139 AAARIDQQIEAP---LTQREGEVLKHVCSGRTNQQIAELLGISYETVKEHVQHLLEKIGV 195 Query: 219 VNRIQAIAKAIRFGY 233 +R QA A+R G Sbjct: 196 ADRTQAAIWAVRAGL 210 >gi|94314237|ref|YP_587446.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358089|gb|ABF12177.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 247 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Query: 120 FPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 P+ + K G V F F ++ + + ++ LT RE Sbjct: 127 VPMTVAAMKAGAVNFIAKPFRDQDLLDAVDEALQRDRAQREAEAQSRQLRDHFDTLTGRE 186 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +QLA G +++IA+ LG+S TV Y G A K+ A + + A G + Sbjct: 187 QEVMQLAARGLMNKQIADDLGISEATVKIYRGHAMRKMQARTFAELVIMAQSLGLV 242 >gi|326779789|ref|ZP_08239054.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326660122|gb|EGE44968.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 244 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G++++ IAE+L +S TV ++ A KL A +R Q + Sbjct: 173 AERLAALTGREREVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVI 232 Query: 228 AIRFGYI 234 A G + Sbjct: 233 AYESGLV 239 >gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 221 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G ++ +I ++L LS T+ Y+ S K + NR + + A+ Sbjct: 152 GLTQREQEVLTLLTKGLSNAQIGDRLHLSARTIEKYVSSLLQKTEVHNRAELVRFALEHH 211 Query: 233 YI 234 + Sbjct: 212 LL 213 >gi|16080459|ref|NP_391286.1| two-component response regulator YvfT [Bacillus subtilis subsp. subtilis str. 168] gi|221311357|ref|ZP_03593204.1| hypothetical protein Bsubs1_18471 [Bacillus subtilis subsp. subtilis str. 168] gi|221315684|ref|ZP_03597489.1| hypothetical protein BsubsN3_18387 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320599|ref|ZP_03601893.1| hypothetical protein BsubsJ_18350 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324884|ref|ZP_03606178.1| hypothetical protein BsubsS_18506 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312958|ref|YP_004205245.1| two-component response regulator YvfT [Bacillus subtilis BSn5] gi|81814911|sp|O07019|YVFU_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yvfU gi|1945721|emb|CAB07991.1| hypothetical protein [Bacillus subtilis] gi|2635919|emb|CAB15411.1| two-component response regulator [YvfT] [Bacillus subtilis subsp. subtilis str. 168] gi|320019232|gb|ADV94218.1| two-component response regulator (YvfT) [Bacillus subtilis BSn5] Length = 200 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+LA G T+++I +L LS TV Y+ KL+A NR +A + A G Sbjct: 139 PLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLNAKNRTEAASIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|94311470|ref|YP_584680.1| ATP-dependent transcription regulator LuxR [Cupriavidus metallidurans CH34] gi|93355322|gb|ABF09411.1| putative ATP-dependent transcriptional regulator, LuxR-family [Cupriavidus metallidurans CH34] Length = 925 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 9/224 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + R + A +++ I+ L H+YD + +L Sbjct: 688 EIDLAEATVARAQKLSTEAGAGRASVWEIDVVAQLSASG-LALHRHDYDGAMARLRPLLD 746 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF-HK 128 HF + L + ++ + + + G+ + Sbjct: 747 SVELAARGRHFATVL--VQCAVAEDGRGNARAAREHLCGALRHGQRFGLVRSLLDAATGG 804 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----FKKRSSAARNLTERETSCLQ 183 G + + L V A +RS+ R L+ERE L+ Sbjct: 805 QGLMRRLLDEQGLDPVVAFYARRLLEASSRWRGRAVAPASAVRRSTPIRTLSEREAEVLK 864 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L +++ +A L +S TV +L + +KL R +A+A Sbjct: 865 LIAQAMSNKMVARTLSISPETVKWHLKNIYIKLGVSGRDEAVAL 908 >gi|288801178|ref|ZP_06406633.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331789|gb|EFC70272.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 299 str. F0039] Length = 318 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + AA NL+ERE + G +++EIAE L +S++TV + + KL + Sbjct: 243 RGTEAADNLSERERDVIVSLVQGMSNKEIAEHLCISINTVITHRRNIARKLQIHSPAGLT 302 Query: 226 AKAI 229 AI Sbjct: 303 IYAI 306 >gi|239927189|ref|ZP_04684142.1| LuxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435532|ref|ZP_06574922.1| luxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291338427|gb|EFE65383.1| luxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 7/118 (5%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFL--ELFKKRSSAARN 173 + G L+ A + +++ + ++ A Sbjct: 104 SIMAGASGYVLKQIRGSDLVAAVRTVARGQSLLDPSATTKLMARLRGGQQKEEEPDALPG 163 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L G+G T+ +I ++L L+ TV ++ KL RIQA A Sbjct: 164 LTDREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATEA 221 >gi|238786248|ref|ZP_04630193.1| Two-component response regulator [Yersinia bercovieri ATCC 43970] gi|238712839|gb|EEQ04906.1| Two-component response regulator [Yersinia bercovieri ATCC 43970] Length = 210 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AR L+ERE + L+ +G ++++IA+++ +S TV+ Y KL + I+ Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199 Query: 224 AIAKAIRFGYI 234 A + Sbjct: 200 LADYAHTHNLV 210 >gi|256832826|ref|YP_003161553.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256686357|gb|ACV09250.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 226 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%) Query: 148 EAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 +V+ + L + R + +LT+RE L +G+++ EIA +L L Sbjct: 131 ALSRRAARVVVERLRAAETRPAQQFAQSLLASLTDREREITALVAEGFSTAEIATRLYLG 190 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV +L SA K NR + A + G Sbjct: 191 EATVKTHLKSAMNKTGTDNRTRLAVLAAKAGL 222 >gi|254467544|ref|ZP_05080954.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] gi|206684545|gb|EDZ45028.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] Length = 265 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 50/189 (26%), Gaps = 20/189 (10%) Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + D +G P ++ + + + I Sbjct: 74 VEFYASGPYLL-DPLYQACRNGCAPGAYRLMDLAPEAFYRSEYYRAFYRKINISDEIGVL 132 Query: 122 VRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--- 173 V+ G + V F + + + + + Sbjct: 133 VQDGPERWFIVSLARFARQQRFEAADTDRLNAVFKVISAAVRRQWGQAEAAVQGGQPDGW 192 Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L+ RE +QL G+++ A LG++ TV + A KL ++ Sbjct: 193 EDRMQTFGAGVLSPREQEIVQLILQGHSTPSAAAYLGIAEGTVKVHRHHAYSKLGISSQA 252 Query: 223 QAIAKAIRF 231 + + A R Sbjct: 253 ELFSMATRH 261 >gi|167840151|ref|ZP_02466835.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 214 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 6/117 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTE 176 +RLG + + S ++ + A D + + S LT Sbjct: 91 IRLGASGY-LLKWCSPDGIVQAVRRVMAGRVHIDPSLDGARIASAAGGRTPPSPVDELTR 149 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L DG + EIA L +S TV+ + KL A N I A R+GY Sbjct: 150 REKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206 >gi|70730322|ref|YP_260061.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68344621|gb|AAY92227.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 208 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G T+ EIAEKL LS TV+ + + KL + + + A + Sbjct: 147 ALTNRELEVLKLLAEGLTNLEIAEKLHLSNKTVSGHKINILSKLGVTSVVDLVNIARQNE 206 Query: 233 YI 234 + Sbjct: 207 LV 208 >gi|332701939|ref|ZP_08422027.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332552088|gb|EGJ49132.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 215 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGY 189 ++ +L E+ ++ + L ++++A L+ RE L L G Sbjct: 111 LLMRGITAVLEGELWYSRRAISERLRQNQLTQASPKAASAGKEMLSAREREVLLLIAQGL 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +++E+ +KL +S+ TV +L + KL NRIQA A++ Sbjct: 171 SNDEVGDKLCISLSTVKKHLCNIYAKLKISNRIQAAFWAVQN 212 >gi|302036456|ref|YP_003796778.1| hypothetical protein NIDE1093 [Candidatus Nitrospira defluvii] gi|300604520|emb|CBK40852.1| protein of unknown function, putative Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 117 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 ++ R+ + LT R+ L+L G T+ +IA +L +SV TV + + +L Sbjct: 34 ARVVKPAPVRTKRSEGLTPRQKEILKLVSQGNTNRDIARRLDISVRTVEVHRFNLMRRLK 93 Query: 218 AVNRIQAIAKAIRFGYI 234 N Q + +A++ G++ Sbjct: 94 VRNVAQLLRQALQQGFL 110 >gi|312197189|ref|YP_004017250.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228525|gb|ADP81380.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 285 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE ++ +G+++ E A+ L + TV +YL S KL NR A+ A Sbjct: 220 TAFGLTPRELEVVRFIAEGHSNAEAAKHLTVKPETVKSYLRSIMQKLGVHNRTAAVNVAR 279 Query: 230 RFGYI 234 R G + Sbjct: 280 RAGLL 284 >gi|240170339|ref|ZP_04748998.1| transcriptional regulator, LuxR family protein [Mycobacterium kansasii ATCC 12478] Length = 528 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 ++ + E + + + S LT RE L L G +++E Sbjct: 425 SATRRLRRQVQAGELDAVAAEAVLHAAGHRADRSSLRPHGLTPREVEVLCLVARGASNKE 484 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L +S T ++ K+ NRI A A+R G + Sbjct: 485 IAAALVISEKTARNHVERTYAKIGVTNRIGASMYALRNGLV 525 >gi|148272041|ref|YP_001221602.1| putative transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829971|emb|CAN00898.1| putative transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 539 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 6/133 (4%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + + G+ +R T LA + + + V Sbjct: 405 ARSDHAFDRAALHAVSTGV---LRPFAVFPAAASHTLLDRALARDQLPDVRAVLEGVRAG 461 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + ++ LT+RE + DG T +IA +L +S +TV +++ SA KLDA Sbjct: 462 QVPVE---AAPVDPLTDRERLIVACLADGLTVTQIAARLFISPNTVKSHVRSAYRKLDAT 518 Query: 220 NRIQAIAKAIRFG 232 +R +A+ +A G Sbjct: 519 SRSEAVERARALG 531 >gi|118471878|ref|YP_884521.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173165|gb|ABK74061.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++ L+ RE L L G + +A++L L+ TV ++ KL +R Sbjct: 143 EIRRRNEPDVPVLSPREREVLNLIAQGRSIPAMAKELYLAPSTVKTHVQRLYEKLGVSDR 202 Query: 222 IQAIAKAIRFGYI 234 A+A+A+R + Sbjct: 203 AAAVAEAMRRHLL 215 >gi|160872211|ref|ZP_02062343.1| response regulator UvrY [Rickettsiella grylli] gi|159121010|gb|EDP46348.1| response regulator UvrY [Rickettsiella grylli] Length = 225 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 ++ S L+ERE + + G IA+KL LS TVN Y KL Sbjct: 133 MALRQVSDASKSPFAQLSERELQVMYMVTHGTKVNGIAKKLCLSPKTVNTYRYRLYEKLG 192 Query: 218 AVNRIQAIAKAIRFGYI 234 N ++ A+R+G + Sbjct: 193 VHNDVELTHLALRYGLL 209 >gi|229520043|ref|ZP_04409472.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80] gi|229525089|ref|ZP_04414494.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis VL426] gi|229338670|gb|EEO03687.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis VL426] gi|229342992|gb|EEO07981.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80] gi|327483254|gb|AEA77661.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 214 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 RL L G + G++ ++ + + H + + Sbjct: 89 RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QVQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 Query: 227 K 227 Sbjct: 208 W 208 >gi|318061834|ref|ZP_07980555.1| two component system response regulator [Streptomyces sp. SA3_actG] Length = 221 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 8/123 (6%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA---- 171 + LG GY+ + + + A G +V L + R +A+ Sbjct: 98 SILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVLDREVQDRLLATVRARPTASGQGL 157 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L G G + IAEKL +S TV ++ + K +R +A+ +A+ Sbjct: 158 PADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALT 217 Query: 231 FGY 233 G Sbjct: 218 AGL 220 >gi|167842293|ref|ZP_02468977.1| probable two-component response regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 217 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 126 FHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 NGYV+ S +L + + H A + + A LT RE L+ Sbjct: 107 AGANGYVLKNSSQQVLLETLWKVWRGHTALDPALNAAQLGTPSAAPAEVALTPRERQVLK 166 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +G + ++AE+L +++ TV + + KLDA N A R G Sbjct: 167 LIAEGCRNRDVAERLTITIKTVETHRLNLMRKLDAHNAADLTNWAHRLGL 216 >gi|152996834|ref|YP_001341669.1| response regulator receiver protein [Marinomonas sp. MWYL1] gi|150837758|gb|ABR71734.1| response regulator receiver protein [Marinomonas sp. MWYL1] Length = 211 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 ++ + I Q+I + +L+ERE G ++++IA ++ Sbjct: 115 SVVDSGEIWGGKAFIQQLIMQSATSEPLHNDELDDLSERELKVSSFVSKGLSNKQIALEM 174 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 G++ TV A+L S K + +R+ A Sbjct: 175 GITERTVKAHLTSIFKKTNTKDRLALALLA 204 >gi|307327922|ref|ZP_07607104.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886440|gb|EFN17444.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +A +LT RE L G G ++ +IA +L ++ TV ++ KL+ +R Sbjct: 154 SLNTPSPAALASLTPREREVLACLGQGLSNAQIAARLSMAEATVKTHVSRLLSKLELRSR 213 Query: 222 IQAIAKAIRFG 232 +QA A G Sbjct: 214 VQAAVLAQELG 224 >gi|299147639|ref|ZP_07040703.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23] gi|298514426|gb|EFI38311.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23] Length = 257 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI G + Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256 >gi|288927582|ref|ZP_06421429.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330416|gb|EFC69000.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 198 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Query: 157 ITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + + L++RE L L G ++EIA++L + + TV + Sbjct: 110 LEQYAHAHGRNLPPLPHALQMKILSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRK 169 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL + A+ GY+ Sbjct: 170 NIMDKLGMKSVSALTIYAVMHGYV 193 >gi|260911715|ref|ZP_05918291.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] gi|260634140|gb|EEX52254.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] Length = 206 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Query: 157 ITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + + L++RE L L G ++EIA++L + + TV + Sbjct: 118 LEQYAHAHGRNLPPLPHALQMKVLSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRK 177 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL + A+ GY+ Sbjct: 178 NIMDKLGMKSVSALTIYAVMHGYV 201 >gi|297563838|ref|YP_003682811.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848287|gb|ADH70305.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 206 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V G T L + R A ++L++RE L L Sbjct: 96 AGATGYLLKDASPDELLRGVRAVHRGESVLAPTAVRHLMGQVRRPAGQSLSDRELQVLGL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ A +L +S ++ +L KL +R A+A+A R G + Sbjct: 156 VADGASNRAAAARLFISEASIKTHLQHVYNKLGVRDRAAAVAEAYRRGLL 205 >gi|239816565|ref|YP_002945475.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803142|gb|ACS20209.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 235 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ ++AE L +S TV + + KL +R +A+ +A R G Sbjct: 173 ALTPRERRILELVAQGLSNRDMAESLSISRLTVECHTKNIYRKLAVSSRTEAVYQARRHG 232 Query: 233 YI 234 + Sbjct: 233 LL 234 >gi|212691634|ref|ZP_03299762.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855] gi|212665823|gb|EEB26395.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855] Length = 256 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L+L G+ S+EIA+KL +S++TV+ + + KL N ++AI Sbjct: 191 PVVSLTGREMEILRLIQRGFLSKEIADKLCISIYTVHIHRQNLLRKLGVHNSLEAIRLGQ 250 Query: 230 RFGYI 234 G + Sbjct: 251 ESGLL 255 >gi|327405906|ref|YP_004346744.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321414|gb|AEA45906.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 226 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERET + + +G T+ IA+ L LS HT+N + + KL N + A++ Sbjct: 153 LSERETEIITMISEGLTNIMIADSLCLSNHTINTHRKNIMAKLGVKNTAGIVIYAVKTNL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|325961668|ref|YP_004239574.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323467755|gb|ADX71440.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 416 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A NL ERE LQL G + IA KL +S +TV +L + K+ A +R +A+A A Sbjct: 351 AADWNLGERELEVLQLLAAGQRNRSIAAKLHISENTVKFHLRNLYRKIGASSRTEAMALA 410 Query: 229 IRFGY 233 G Sbjct: 411 HSNGL 415 >gi|297158223|gb|ADI07935.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 212 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + LA+ + A G +L + R LT RET L Sbjct: 100 AGAIGYLLKDTTREQLADAIRSAARGETVLAPRVAEKLIARMRRPVQDPLTARETDVLNA 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI ++L ++ TV +L KLD +R +A+ A+ G + Sbjct: 160 VADGLTNAEIGKRLVITEATVKTHLLRLFAKLDVNDRTRAVVVALERGLL 209 >gi|297195878|ref|ZP_06913276.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152976|gb|EFH32075.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 221 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 160 FLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 E + A LTERE + L G G ++EEIA +L +S T ++ V Sbjct: 136 IAEFAARSKGPAEAQGLGELTEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMV 195 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A +R Q + A G + Sbjct: 196 KLGARDRAQLVVLAYESGLV 215 >gi|302531524|ref|ZP_07283866.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440419|gb|EFL12235.1| two-component system response regulator [Streptomyces sp. AA4] Length = 208 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 163 LFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L K R LT+RE L+L G G ++ EIAE+L L+ TV Y+ S KL Sbjct: 135 LDKLRHPPTDELAALTDRERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQ 194 Query: 220 NRIQAIAKAIRFG 232 R QA A R G Sbjct: 195 RRTQAAAWIARRG 207 >gi|196229624|ref|ZP_03128488.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225950|gb|EDY20456.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L L GY +EI E LG+S HTVN+++ KL +R QA+AK G Sbjct: 153 GLAGREVEVLGLLAQGYLYKEIGESLGISTHTVNSHIRRIYEKLHVRSRSQAVAKY--RG 210 Query: 233 YI 234 I Sbjct: 211 LI 212 >gi|220910558|ref|YP_002485869.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219867169|gb|ACL47508.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT E +QL G +++IAE+L +S TV +++ + K NR + A Sbjct: 152 PLDVTLTATELKVVQLVAKGMANQKIAEELHVSQRTVESHVSNMLGKTGLKNRTELARWA 211 Query: 229 IRFGY 233 I Sbjct: 212 IERRL 216 >gi|118592487|ref|ZP_01549878.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118434834|gb|EAV41484.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 207 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDG 188 ++ ++ ++EA G ++ + + SS A +LT RE L L G Sbjct: 98 MLQGGSYMPPDLVELLEA-GPSMRLEKARNLVDARNSSGADLISSLTPRELEVLALIAQG 156 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + ++ IA L LS HT+ ++ K+ NR +A A Sbjct: 157 HQNKNIAANLSLSEHTIKLHIHHIISKMGVSNRTEAAA 194 >gi|91213197|ref|YP_543183.1| DNA-binding transcriptional activator UhpA [Escherichia coli UTI89] gi|117625950|ref|YP_859273.1| DNA-binding transcriptional activator UhpA [Escherichia coli APEC O1] gi|218560750|ref|YP_002393663.1| DNA-binding transcriptional activator UhpA [Escherichia coli S88] gi|237703473|ref|ZP_04533954.1| response regulator for uhpBA two component regulatory system [Escherichia sp. 3_2_53FAA] gi|91074771|gb|ABE09652.1| response regulator for uhpBA two component regulatory system [Escherichia coli UTI89] gi|115515074|gb|ABJ03149.1| response regulator for uhpBA two component regulatory system [Escherichia coli APEC O1] gi|218367519|emb|CAR05301.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli S88] gi|226902737|gb|EEH88996.1| response regulator for uhpBA two component regulatory system [Escherichia sp. 3_2_53FAA] gi|294489575|gb|ADE88331.1| transcriptional regulatory protein UhpA [Escherichia coli IHE3034] gi|307628751|gb|ADN73055.1| DNA-binding transcriptional activator UhpA [Escherichia coli UM146] gi|315285483|gb|EFU44928.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|323949916|gb|EGB45800.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323955033|gb|EGB50811.1| response regulator receiver domain-containing protein [Escherichia coli H263] Length = 196 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|84685388|ref|ZP_01013286.1| Possible LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666545|gb|EAQ13017.1| Possible LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 197 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 14/183 (7%) Query: 52 CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 + YD +I D +F I W I + + Sbjct: 29 LMIQTYDPRWTEIYTEKGYMLADPMVFWGFGNDGAIRWSDIDLPDPLN-----IMGQARR 83 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 G+A F + + I + R++ Sbjct: 84 FGLTFGVAVS-TGLTSSRTIGGFARDDREFTDTEIARIRSVVETLHE--------RATPP 134 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT + L+L G E + LG+S A L +A L +A+ +A + Sbjct: 135 DRLTPAQRMALRLVAKGNRHAEASAVLGISESAFKARLRAAREALFVRTTAEAVQRAHEY 194 Query: 232 GYI 234 + Sbjct: 195 NLL 197 >gi|302539653|ref|ZP_07291995.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457271|gb|EFL20364.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 39/84 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + R +T+RE L+L +G+TS++IA+ L +SV TV + Sbjct: 134 AVNALIRNHLDRARHGEPLPERAITDREEEILKLVAEGHTSQQIADMLVISVKTVERHRA 193 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 194 NLLQKLGLKDRLELTRYAIRAGLI 217 >gi|229821513|ref|YP_002883039.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567426|gb|ACQ81277.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 232 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 5/124 (4%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + V + + + A + D + Sbjct: 114 RAGARGYVTKSITGTDLSDAVVRVAGGDAVFSPRLAGFVLDAFGAIGGDVATGDE----- 168 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE ++L GYT E+A +L +S+ TV ++ + KL +R + A + Sbjct: 169 LDKLTAREREVMRLIARGYTYREVASELFISIKTVETHVSAVLRKLQLSSRHELTRWAAQ 228 Query: 231 FGYI 234 + Sbjct: 229 RRLL 232 >gi|94501729|ref|ZP_01308243.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Oceanobacter sp. RED65] gi|94426129|gb|EAT11123.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Oceanobacter sp. RED65] Length = 198 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT R+ LQL G ++ I +L +S TV +L + L+ R Q + A Sbjct: 134 PNIELTPRQREVLQLLAQGLPNKAICRELNMSEATVKTHLRTIFALLNVNTRTQCVNVAQ 193 Query: 230 RFGYI 234 ++ I Sbjct: 194 QYSLI 198 >gi|108797407|ref|YP_637604.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866491|ref|YP_936443.1| LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108767826|gb|ABG06548.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692580|gb|ABL89653.1| transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 544 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 1/116 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERE 178 +R+ + + L + + E+ + A + LT RE Sbjct: 429 VRLRMAQACRRMNDDDTAAMELDAARRVFEQLGAAPALAQVAEVSTNAPAGAPSGLTTRE 488 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIA L +S TV +LG+ KLD +R A A A + + Sbjct: 489 LEVLRLLATGATNREIAHTLVISEKTVARHLGNIFNKLDVSSRTAATAYAYQHDLV 544 >gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 249 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 148 EAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E QV L +K + T RE S L L G ++EIA +L S Sbjct: 156 ELEKIAKQVAEIRAMLDQKNGIVQTPPPLRIDFTAREQSVLDLVAQGLMNKEIARRLETS 215 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V V Y+ K +R + + A+ G Sbjct: 216 VRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 247 >gi|307328434|ref|ZP_07607610.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886007|gb|EFN17017.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 234 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 31/67 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + R L+ RE L L GDG T+ +I ++L LS TV ++ KL R Sbjct: 155 APQEPRDEVLAGLSPREREILVLIGDGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERR 214 Query: 222 IQAIAKA 228 IQA A Sbjct: 215 IQAAVLA 221 >gi|293414338|ref|ZP_06656987.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185] gi|291434396|gb|EFF07369.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185] Length = 216 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|302554590|ref|ZP_07306932.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472208|gb|EFL35301.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 217 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L R +TERE L+L +G+TS+EI E L +S TV + + KL +R Sbjct: 143 RLHAGGGLPERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGMRDR 202 Query: 222 IQAIAKAIRFGYI 234 ++ AIR G I Sbjct: 203 LELTRYAIRAGLI 215 >gi|262202074|ref|YP_003273282.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085421|gb|ACY21389.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 218 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 33/80 (41%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L K R LT +E L G+G T+ +IAE++ L+ T+ Y+ Sbjct: 133 RSTAALLAKLRDGKDRPDPLAELTSQEREVFNLIGEGMTNRQIAERMFLAEKTIKNYVSR 192 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KLD R Q A + Sbjct: 193 ILAKLDMQRRTQVAVMATKL 212 >gi|218258047|ref|ZP_03474480.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii DSM 18315] gi|218225811|gb|EEC98461.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii DSM 18315] Length = 202 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + E ++ T+ + + S + L+ RE + G T+ EIA++L LS H Sbjct: 105 DSADELKHKLERLNTEEVPPEEGESDDQQTLSSREKEIVVCVVKGMTNREIADRLYLSTH 164 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV + + KL + AI I Sbjct: 165 TVITHRRNIARKLQVHSASGLTVYAIVNKLI 195 >gi|187920845|ref|YP_001889877.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719283|gb|ACD20506.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 267 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 68/247 (27%), Gaps = 34/247 (13%) Query: 5 TLTGKKSSSLQELS---PRLHLIQNRIKARNFA--LYTINSALDFPRRQQLICELHNYDL 59 G+ L + + L++ + N+ ++ N Q + Sbjct: 12 QRLGRLVEKLDDKQFWHALIDLLRKVVHFDNWVAMIFWPNGKPQLIAETQTRTPHDDLFK 71 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 D F + P ++ + + R + + Sbjct: 72 GYL-----NSVYLLDPFYQFSLGAISPGVYCLDEVAPDHFRETEYFRRYFSVNVLEDEVQ 126 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAA- 171 L V SE + +V C+ + L SSAA Sbjct: 127 LLAPLPLGGTLSVSLGSERRFSSADVGTLCLYGAWLLPLMCHALSAQTAILPPPASSAAG 186 Query: 172 ----------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +LT RE + G++++ +A +LG+S T + + K Sbjct: 187 GDRRLHFEQALRKRSNASLTHREIEVALMILAGHSTKNMARELGVSPATAKVHRRNLYRK 246 Query: 216 LDAVNRI 222 L+ ++ Sbjct: 247 LNISSQA 253 >gi|46198976|ref|YP_004643.1| two-component response regulator [Thermus thermophilus HB27] gi|46196600|gb|AAS81016.1| two-component response regulator [Thermus thermophilus HB27] Length = 192 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 153 CYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ L + + + LT RE L+L +G +++EIA L LS TV ++ Sbjct: 106 APELKRRLLRIRQGEERLTAPDIPALTPREEEVLRLLAEGLSTKEIARALRLSPETVRSH 165 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L S KL+A NR++A+++A G++ Sbjct: 166 LESLYAKLEARNRVEALSRARSLGFL 191 >gi|325922114|ref|ZP_08183907.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325547411|gb|EGD18472.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 923 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA L LS +TV +L + Sbjct: 827 RALTIQALLERLSGDEDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 887 LYRKLDARSRESALAQALQRGLL 909 >gi|312143766|ref|YP_003995212.1| transcriptional regulator, LuxR family [Halanaerobium sp. 'sapolanicus'] gi|311904417|gb|ADQ14858.1| transcriptional regulator, LuxR family [Halanaerobium sp. 'sapolanicus'] Length = 255 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NLT+RE L+L G +++EIA +L +S++TV ++ K +RI+ I Sbjct: 197 NLTDREKQVLKLIIQGMSNQEIAAELFISINTVKKHISHLFNKCKVSSRIELI 249 >gi|270263820|ref|ZP_06192088.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042013|gb|EFA15109.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 215 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 7/133 (5%) Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE--FLMLANEVIIEAHGAC 153 I ++ +R V + F + + Sbjct: 81 AAIANNRHYYHDFMLPNDMRDMTEIFIRQRKRIIAGVSLIRDTPFTEVERGRLRAVLPLI 140 Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 D L + A+ LT +E + + +G +++ IA KLG+S+ TV ++ + Sbjct: 141 ELATRDLLPGCE-----AQLLTAKEQEIVNMVREGASNKRIALKLGISLSTVKTHMRNIF 195 Query: 214 VKLDAVNRIQAIA 226 K + NR + +A Sbjct: 196 AKTEVANRTELVA 208 >gi|262172512|ref|ZP_06040190.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451] gi|261893588|gb|EEY39574.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + ++ A +LT RE L+ G ++ +IAE L +S TV ++L Sbjct: 131 HVSSQLLHYYRYAFQTHQTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHL 190 Query: 210 GSATVKLDAVNRIQAIAK 227 KL+ NR++AIA Sbjct: 191 YQIFKKLNVKNRVKAIAW 208 >gi|170768176|ref|ZP_02902629.1| transcriptional regulator CsgD [Escherichia albertii TW07627] gi|170122942|gb|EDS91873.1| transcriptional regulator CsgD [Escherichia albertii TW07627] Length = 216 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|73537995|ref|YP_298362.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134] gi|72121332|gb|AAZ63518.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia eutropha JMP134] Length = 960 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 80/232 (34%), Gaps = 13/232 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL--HNYDLDSGDIPNIL 68 + + + RL + ++ + +++ R ++ L + D + +L Sbjct: 729 IDTAEAVLSRLRAVA--LRHEHAPRGVLDAIHLSAERASILVSLAHNELDDAWRRVMGLL 786 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + H I+ I + Q + L G+ + + Sbjct: 787 AYCEARGWQRHATQQH--ILAAVIASRRGDTETAQDHAMIALRLGHKLGLVRALMDTYPG 844 Query: 129 NGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + ++ + + E + A Q+ + E + L++RE Sbjct: 845 SLDLLVAAAANEPQDPVLGFYVERLQAAAQVLPQMASGNTESTDHALAGQEELSDREADV 904 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++L +++IA LGLS TV +L + KL+ +R +A+A+ G Sbjct: 905 VRLLAQALPNKKIARTLGLSPETVKWHLRNIFRKLNVSSRDEAVARMRDRGL 956 >gi|297154246|gb|ADI03958.1| putative two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 4/135 (2%) Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + AG + F ++ + G + ++A + A + Sbjct: 84 FDLDEYAYEGLRAGASGFLLKDARPEELVAGIHAVATGDAVVAPSLTRRLLDAYAHRVLA 143 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + R L++RE L G G+T+ EIAE+L L+ TV ++G K+ A Sbjct: 144 PADAHAPADPRLRTLSDREREVLVAIGQGWTNTEIAERLVLTESTVKKHVGRVLAKIGAR 203 Query: 220 NRIQAIAKAIRFGYI 234 +RIQA+ A G + Sbjct: 204 DRIQAVIMAYDAGLV 218 >gi|228970024|ref|ZP_04130734.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228789688|gb|EEM37560.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto str. T04001] Length = 86 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A LT RE LQL G IA +L LS TV Y +A KL N+ +A+ KA Sbjct: 20 ATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKA 79 Query: 229 IRFGYI 234 + G I Sbjct: 80 LEIGII 85 >gi|119960584|ref|YP_948678.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119947443|gb|ABM06354.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 224 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 17/136 (12%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEF-----------------LMLANEVIIEAHGACYQVIT 158 + +A V VI + + + A + + Sbjct: 89 SFLALSVSDAAEDVVSVIRAGARGYVTKTISGKEISDAVIRVADGDAVFSPRLAGFVLDA 148 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L+ RE ++L GY+ +E+A++L +S+ TV ++ + KL Sbjct: 149 FGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSAVLRKLQL 208 Query: 219 VNRIQAIAKAIRFGYI 234 +R + A + Sbjct: 209 SSRHELTKWAAERRLL 224 >gi|50120435|ref|YP_049602.1| two-component system response regulator protein [Pectobacterium atrosepticum SCRI1043] gi|49610961|emb|CAG74406.1| two-component system response regulator protein [Pectobacterium atrosepticum SCRI1043] Length = 209 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 11/184 (5%) Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + ++ YG + PI I ES L RL F I Sbjct: 23 LENDIQVVGQYGSAAQAWPHLLKQPIDVAVIDIAMPDESGLSLLTRLRQQRPNFRAIILS 82 Query: 122 VRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR 172 + + L E +++A + ++ Sbjct: 83 IYDTTAFVQSALDAGAGGYLTKRCGPEELVQAVRVVSSGGLYLCADALHAIRHQQQPPKE 142 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L +G + + IAE+L LS TV+ + + KL + ++ + A++ Sbjct: 143 LLTLTPREREIFSLLINGISVKSIAEQLELSHKTVHVHRANILSKLQCESTVELVHFALQ 202 Query: 231 FGYI 234 + Sbjct: 203 HQLL 206 >gi|33865919|ref|NP_897478.1| DNA-binding response regulator [Synechococcus sp. WH 8102] gi|33633089|emb|CAE07900.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102] Length = 235 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 13/140 (9%) Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACY 154 +E + VR G+ F LG + G + ++ + I A Sbjct: 102 LERETKALVREALDAF-ADGVIFKSSLGTGRGDLIGALHTLADGGVYYPAEIRRLAAAAP 160 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q LT+RE G S IA+ LG+S+ TV ++G+A Sbjct: 161 Q---------PDLPPLVEELTQRELDVAAAVARGLKSNAIADLLGISLETVKTHVGNAMD 211 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A +R Q A+ +G I Sbjct: 212 KLGARDRTQMAVTALLYGLI 231 >gi|84503539|ref|ZP_01001590.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] gi|84388029|gb|EAQ01077.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] Length = 196 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 LA + +I A V + + + +LT RE ++ GY+++EIA +LG+ Sbjct: 105 LAPDELIRAVDRL--VAGGTFLPDEAVARMSFSLTPREVEVVRGIAAGYSNKEIARELGV 162 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + + KL+A NR A +A G + Sbjct: 163 QEVTVKLHVKTLSRKLEARNRTHAAMRARDLGLV 196 >gi|152968206|ref|YP_001363990.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362723|gb|ABS05726.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 230 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + H A V E ++ + LTERE L G G ++ E+ ++L +S TV Sbjct: 144 RLVGHYAADAVNPRRREAAERLT----TLTEREREVLACVGRGMSNAEVGKELFMSEATV 199 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL A NR+Q A G + Sbjct: 200 KTHVSRLLTKLQAHNRVQVAIVAHDAGLL 228 >gi|318076428|ref|ZP_07983760.1| two component system response regulator [Streptomyces sp. SA3_actF] gi|333026664|ref|ZP_08454728.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332746516|gb|EGJ76957.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 209 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 8/123 (6%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA---- 171 + LG GY+ + + + A G +V L + R +A+ Sbjct: 86 SILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVLDREVQDRLLATVRARPTASGQGL 145 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L G G + IAEKL +S TV ++ + K +R +A+ +A+ Sbjct: 146 PADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALT 205 Query: 231 FGY 233 G Sbjct: 206 AGL 208 >gi|315657544|ref|ZP_07910426.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492016|gb|EFU81625.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 221 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE L L + T+ +IA +L +S +TV ++ S K DA +R A+A Sbjct: 155 PSDTVLTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGAVAHG 214 Query: 229 IRFGYI 234 IR G I Sbjct: 215 IRQGII 220 >gi|302549097|ref|ZP_07301439.1| LuxR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302466715|gb|EFL29808.1| LuxR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 981 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 46/145 (31%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 + V+ + G V A + + Sbjct: 829 DAAAWAQVVTAFGYGDVYERARCRLRYAEALVAAGRREEAVAEARAVRETADDLGALPLR 888 Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 V L A LT RE L+L G ++ I E+L +S T + ++ Sbjct: 889 EQVDALVRRGRLADTPGSGDRAGVLTAREQEVLRLLALGRSNRRIGEELFISGKTASVHV 948 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL A +R +A+A A R G I Sbjct: 949 SNILAKLGASSRGEAVAVAYREGLI 973 >gi|325679856|ref|ZP_08159425.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324108294|gb|EGC02541.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 208 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + + ++ AA ++++E ++ G +++EIA +L L TV Y+ + KL Sbjct: 131 LPELMTRREEFDFAAHGISDKERDIMEAVASGLSNKEIAAELFLGEGTVRNYISNLLDKL 190 Query: 217 DAVNRIQAIAK 227 +R Q Sbjct: 191 GLRDRTQLAVY 201 >gi|281424125|ref|ZP_06255038.1| transcriptional regulator [Prevotella oris F0302] gi|281401782|gb|EFB32613.1| transcriptional regulator [Prevotella oris F0302] Length = 212 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 42/98 (42%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + A + + Q + + L + + +S LT E L+ G T+ EIAE Sbjct: 108 QEIREALDYAVRGRRFICQRMAEMLLVPMETASNRAKLTPTENEILKDIALGMTTREIAE 167 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 K S HTVN + + KL +A A+R G + Sbjct: 168 KRFSSFHTVNTHRKNIFRKLGVNTIHEATKYALRAGLV 205 >gi|15890219|ref|NP_355891.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15158405|gb|AAK88676.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 218 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 5/112 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTE 176 P+ + K G V F ++ + I++A A + + +S A LT Sbjct: 97 IPMSVRAMKAGAVDFLTK--PFKEQDILDAVAAAMERDASRRRESAQNEAVTSLAGQLTP 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE + G +++IA +LG+S TV + G+ K++A + + KA Sbjct: 155 REREVMGAVVRGLMNKQIAYELGISEVTVKLHRGNVMRKMEARSVADLVRKA 206 >gi|238792683|ref|ZP_04636315.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] gi|238728039|gb|EEQ19561.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] Length = 209 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 13/160 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + ES L RL + F I + G + ++ Sbjct: 48 VHVAVMDISMPDESGLSLLKRLRQTMPNFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107 Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E++ L + LT RE QL +G + + I Sbjct: 108 PD-ELVQALRTVSGGGLYLCADALRALRYMPQHPPQLAILTPREKEVFQLLINGVSVKSI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L LS TV+ + + KL ++ + A++ + Sbjct: 167 ADQLSLSHKTVHVHRANILGKLHCETTVELVHFALQHQLL 206 >gi|314924490|gb|EFS88321.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|315094740|gb|EFT66716.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315102902|gb|EFT74878.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328589|gb|EGE70349.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 242 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 176 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 235 Query: 232 GYI 234 G + Sbjct: 236 GLV 238 >gi|242239203|ref|YP_002987384.1| transcriptional regulator NarL [Dickeya dadantii Ech703] gi|242131260|gb|ACS85562.1| two component transcriptional regulator, LuxR family [Dickeya dadantii Ech703] Length = 216 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 160 FLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L + R + LT RE L+L G ++ IA KL ++ TV ++ K+ Sbjct: 139 AASLRENRHPGDRDIQQLTPREKDILKLIAQGLPNKVIARKLNITESTVKVHVKHLLKKM 198 Query: 217 DAVNRIQAIAKAIR 230 +R++A ++ Sbjct: 199 KLRSRVEAAVWVLQ 212 >gi|297199555|ref|ZP_06916952.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713519|gb|EDY57553.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 29/61 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L L G + EIAE LGLS T ++ KL A +R Q + A Sbjct: 154 ECLSDREREVLALVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYES 213 Query: 232 G 232 G Sbjct: 214 G 214 >gi|111017210|ref|YP_700182.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110816740|gb|ABG92024.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 287 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 2/166 (1%) Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 ++ + +E + + + L G P + + Sbjct: 123 GLRANRPLGDRVTDRVMRGAARLARELDIRDEVDRRLAMLAASSGVDRG--VPRDVRVSE 180 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + V L + L+ RE+ L G Sbjct: 181 AITESYLALRDIADRLGDDGLGAEVQAVEQKLRRLTAPGDPSTVTLSRRESDVLAHVALG 240 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA++L LSV TV +Y+ + KL+ +R +A+ +A R G + Sbjct: 241 CRNAEIADRLSLSVETVKSYMRNLMGKLEVRSRQEAVVEARRQGLL 286 >gi|15613614|ref|NP_241917.1| two-component response regulator [Bacillus halodurans C-125] gi|10173666|dbj|BAB04770.1| two-component response regulator [Bacillus halodurans C-125] Length = 212 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ L LT+RE + ++L G+G +++EIA+ L LSV TV Y+ Sbjct: 129 VAAKVLPRLLHQQTGEVEERTARLTKRELAVVKLVGEGKSNQEIADALFLSVGTVKNYIS 188 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 A KL+ +R Q A++ Sbjct: 189 QALDKLELRDRTQLAIYAVKQQL 211 >gi|329957350|ref|ZP_08297870.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328523063|gb|EGF50166.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 215 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARNLTE 176 L V+F S E + Q+ + + T Sbjct: 94 LRHPDINAVVFKSSGTEALREAVCAVMVDENYYCQRYQQLYKEKNRPDDETELPDMLPTS 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G ++ EI+ L +S +TV + + +K A N + KA+ GY+ Sbjct: 154 RELDVLKAIAQGMSTHEISRHLFISENTVEWHRKNLMLKFAARNATDLVIKALTKGYL 211 >gi|291299270|ref|YP_003510548.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568490|gb|ADD41455.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 993 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 3/164 (1%) Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D P +W+ + ++ A +A R + Sbjct: 830 QIDAETARLRGASDPALWREAVAAFGYGEIYRQAIGRWRLA--EALLAGGNRADREEAAT 887 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYT 190 + + + L ++ A L T+RE + L+L G+T Sbjct: 888 QLALAAKTADKLDAAPLRKAVAALTRRARLRGEASAAAPANGLLTDRELAVLKLVAVGHT 947 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++++ +L +S TV+ +L KL +R +A++ A G + Sbjct: 948 NKQVGAELFISDKTVSVHLSRVMAKLGVTSRTEAVSAAYTAGLL 991 >gi|198245542|ref|YP_002217566.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207858844|ref|YP_002245495.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197940058|gb|ACH77391.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206710647|emb|CAR35005.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326625348|gb|EGE31693.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 200 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195 >gi|83747164|ref|ZP_00944207.1| Two-component response regulator [Ralstonia solanacearum UW551] gi|207727505|ref|YP_002255899.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207741890|ref|YP_002258282.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum IPO1609] gi|83726139|gb|EAP73274.1| Two-component response regulator [Ralstonia solanacearum UW551] gi|206590742|emb|CAQ56354.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206593276|emb|CAQ60203.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 210 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182 GYV+ + L + G + + + ++ + LT RE L Sbjct: 98 RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVAPTPVEALTPREHDIL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G++++ IA++LGLSV TV ++ + KL + + + A+ G Sbjct: 158 DGVAQGWSNKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVEAG 207 >gi|258623350|ref|ZP_05718354.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM573] gi|258584316|gb|EEW09061.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM573] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + ++ A +LT RE L+ G ++ +IAE L +S TV ++L Sbjct: 131 HVSSQLLHYYRYAFQTHQTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHL 190 Query: 210 GSATVKLDAVNRIQAIAK 227 KL+ NR++AIA Sbjct: 191 YQIFKKLNVKNRVKAIAW 208 >gi|254441976|ref|ZP_05055460.1| transcriptional regulator, LuxR family protein [Octadecabacter antarcticus 307] gi|198250584|gb|EDY74908.1| transcriptional regulator, LuxR family protein [Octadecabacter antarcticus 307] Length = 146 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LTERE L+ +G +++EIA L + TV ++ + K+ NR QA Sbjct: 80 NPLADKLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALI 139 Query: 228 AIRFGY 233 Sbjct: 140 GREANL 145 >gi|332716915|ref|YP_004444381.1| nodulation protein W [Agrobacterium sp. H13-3] gi|325063600|gb|ADY67290.1| nodulation protein W [Agrobacterium sp. H13-3] Length = 213 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 5/117 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNLTE 176 P+ + K G + F ++ ++ I++A +Q + A+ LT Sbjct: 99 IPMTVRAMKAGAIDFLTK--PFRDQDILDAVSVAFQKDREMRQQSAANGAVVELAKTLTR 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + G +++IA LG+S TV + G+ K++A + + + KA G Sbjct: 157 REHEVMTAVVQGLMNKQIAFNLGISEITVKLHRGNVMRKMEARSVAELVRKAELLGL 213 >gi|218700457|ref|YP_002408086.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI39] gi|218370443|emb|CAR18250.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli IAI39] Length = 216 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|182413103|ref|YP_001818169.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840317|gb|ACB74569.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 11/156 (7%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEF 138 + + S + ++ + L GYV+ +S Sbjct: 54 DVALLDLRMPVRSGTEAIEQIRRDHPHARILVLTAFSGDEDIRKALRAGARGYVLKSSTG 113 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L + A G + L + S LT RE LQ G ++EIA L Sbjct: 114 EGLIPAIRAVAAGEPWIPNDVATRLAMRSS--YEELTSREIQVLQEIAKGKANKEIAAVL 171 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +TV +L + KL R +A+ A++ G I Sbjct: 172 AISEYTVKDHLKNIMGKLHVAVRTEAVTAAVQRGII 207 >gi|110835015|ref|YP_693874.1| transcriptional regulator DegU [Alcanivorax borkumensis SK2] gi|110648126|emb|CAL17602.1| transcriptional regulatory protein degu (protease production enhancer protein) [Alcanivorax borkumensis SK2] Length = 216 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + L S +LT ++ + + +G ++ IA +L +S TV A++ + Sbjct: 130 ARRAMPPTLPDHSAMSDRITSLTPQQFRVMGMLMEGMQNKVIAYELDVSEATVKAHMTAI 189 Query: 213 TVKLDAVNRIQAI 225 KL NR QA+ Sbjct: 190 FRKLGVRNRTQAV 202 >gi|298485722|ref|ZP_07003801.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159748|gb|EFI00790.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 909 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE L L G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 845 SDCLSVRELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKA 904 Query: 231 FGYI 234 G + Sbjct: 905 LGLL 908 >gi|218549230|ref|YP_002383021.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii ATCC 35469] gi|218356771|emb|CAQ89399.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia fergusonii ATCC 35469] gi|324113838|gb|EGC07812.1| luxR family protein regulatory protein [Escherichia fergusonii B253] gi|325497648|gb|EGC95507.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii ECD227] Length = 216 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKISVKNRTQAVSWA 210 >gi|116626901|ref|YP_829057.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230063|gb|ABJ88772.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS LT+RE L++ +G + +EIA LSV TV A+ + KLD N+ Q + Sbjct: 149 RSPRFGTLTKREREILKMLAEGKSVKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQ 208 Query: 227 KAIRFGYI 234 AI+ I Sbjct: 209 YAIQKKII 216 >gi|145294782|ref|YP_001137603.1| hypothetical protein cgR_0730 [Corynebacterium glutamicum R] gi|140844702|dbj|BAF53701.1| hypothetical protein [Corynebacterium glutamicum R] Length = 230 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L GYT +EI ++L +SV TV + + K NR A Sbjct: 165 PVVDALTRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQSNRHALTRWA 224 Query: 229 IRFGY 233 Sbjct: 225 HSRDL 229 >gi|19551845|ref|NP_599847.1| two-component system response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389503|ref|YP_224905.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323377|dbj|BAB98005.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324837|emb|CAF19319.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 230 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L GYT +EI ++L +SV TV + + K NR A Sbjct: 165 PVVDALTRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQSNRHALTRWA 224 Query: 229 IRFGY 233 Sbjct: 225 HSRDL 229 >gi|262381581|ref|ZP_06074719.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296758|gb|EEY84688.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 254 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 40/72 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L A + LT+RE L L G+ S+EIA KL LS++TVN + + KL N I Sbjct: 182 LASAVVPADQQLTKREKEILLLIRQGFLSKEIASKLNLSIYTVNNHRKNILAKLKVDNVI 241 Query: 223 QAIAKAIRFGYI 234 +AI +A FG + Sbjct: 242 EAINRAESFGIL 253 >gi|262195078|ref|YP_003266287.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262078425|gb|ACY14394.1| two component transcriptional regulator, LuxR family [Haliangium ochraceum DSM 14365] Length = 212 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + ++ L++RE + G T+ EIA L +SV TV+ + Sbjct: 129 IATSFAERHIRPDAEK-PLVETLSKREFQVMTHLAQGMTNREIAGVLQISVKTVDTHRSH 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ N AI+ GYI Sbjct: 188 VLKKLELRNNSDITRFAIQHGYI 210 >gi|134093850|ref|YP_001098925.1| putative two-component system response regulator [Herminiimonas arsenicoxydans] gi|133737753|emb|CAL60798.1| putative two-component system response regulator LuxR family [Herminiimonas arsenicoxydans] Length = 232 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL--ELFKKRSSAARNL 174 L GYV+ + + +A + ++I + + +++ L Sbjct: 112 LRAGATGYVLKERDDMEVALSIRSVLRGGAPIDPFIARRIIDELRPKTMPHEKAPNNETL 171 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE+ L L G + EI+E+L LS +T+ ++ KL +R +AI +A G + Sbjct: 172 SPRESEILGLVAQGLANREISEQLHLSRYTIECHIKHIYRKLAVSSRTKAIHEARSRGLL 231 >gi|187930792|ref|YP_001901279.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|309780211|ref|ZP_07674962.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] gi|187727682|gb|ACD28847.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|308920914|gb|EFP66560.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCL 182 GYV+ + L + G + + + ++ + LT RE L Sbjct: 102 RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVMPTPVEALTPRERDIL 161 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + GY ++ IA++LGLSV TV ++ + KL + + + A+ G Sbjct: 162 EGIAKGYANKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVELG 211 >gi|91774800|ref|YP_544556.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708787|gb|ABE48715.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 212 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 19/146 (13%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-----------A 149 R + G L + V + + E + + Sbjct: 66 LRRFKAGSLRARFVVLTVSDAEDDLLEALRAGADGYLLKDMEPEQLCDSLKKIAEGVTVI 125 Query: 150 HGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +V+ L+ + A LT+RE LQ DG +++ IA KLG+S TV Sbjct: 126 QDRLTEVLRQALQEQGSKPGPATPDQVSLTDREQEILQFLADGLSNKAIARKLGISDTTV 185 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 ++ KL +R++A A R Sbjct: 186 KVHVKHLLSKLRLTSRLEAAVWAHRQ 211 >gi|315103380|gb|EFT75356.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] Length = 210 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMVRMRSPRTSLTAREFDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTDLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|237730333|ref|ZP_04560814.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226905872|gb|EEH91790.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 209 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 13/160 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---- 142 + + E+ L RL F I + + L Sbjct: 48 VSVAVMDIAMPDENGLSLLKRLRAQKPGFRAIILSIYDSPTFVQSALDAGASGYLTKRCG 107 Query: 143 NEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E +++A H C + L ++ + LT RE L G + +EI Sbjct: 108 PEELVQAVRSVGMGGHYLCADAL-RALRGGEQPAQVLEVLTPREREVFDLLVKGDSVKEI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A KL LS TV+ + + KL + I + A+ + Sbjct: 167 AFKLDLSHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 206 >gi|108797570|ref|YP_637767.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866657|ref|YP_936609.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433193|ref|YP_001068884.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108767989|gb|ABG06711.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692746|gb|ABL89819.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126232993|gb|ABN96393.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 215 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 40/102 (39%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + L E + A + LT RE L+L +GY++ Sbjct: 112 LLAACRATLRGEPFLYAGAVTALIRDYLHRARSGDELPDTILTPREEEVLKLVAEGYSTR 171 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L +S TV+ + + KL +R+ AIR G I Sbjct: 172 EIAATLSISAKTVDRHRANILAKLGLRDRLALTRYAIRAGLI 213 >gi|294630526|ref|ZP_06709086.1| response regulator, two-component system [Streptomyces sp. e14] gi|292833859|gb|EFF92208.1| response regulator, two-component system [Streptomyces sp. e14] Length = 224 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L L G ++ EI+E+L ++ TV ++ VKL +R QA A Sbjct: 161 LTERETEVLVLIAQGLSNGEISERLVVAESTVKTHVSRVLVKLGLRDRTQAAVFAYEARL 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|224539069|ref|ZP_03679608.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus DSM 14838] gi|224519314|gb|EEF88419.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus DSM 14838] Length = 250 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 8/132 (6%) Query: 106 VRLEGGLLPFAGIA---FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 +R+ + I F + + + ++ + + + LE Sbjct: 124 MRMRDHSGRYVHILHRMFYIASHSNGSVWLSLCLYNFSMDTSL---SCTILNSADGQTLE 180 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K+ L++RE LQL G S++IA+ L +S++TVN + + KL N I Sbjct: 181 LEKQN--CNDLLSDREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEKLQVNNSI 238 Query: 223 QAIAKAIRFGYI 234 +A A + Sbjct: 239 EACRIAKELHLL 250 >gi|37521368|ref|NP_924745.1| transcriptional regulator [Gloeobacter violaceus PCC 7421] gi|35212365|dbj|BAC89740.1| gsr1799 [Gloeobacter violaceus PCC 7421] Length = 74 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +A LT RE L G ++ EIA L +S TV ++ +L +R Q Sbjct: 3 SQPPPAALTALTPRERQVSGLIARGASNAEIARSLYISEGTVKFHITKILSRLGVRDRTQ 62 Query: 224 AIAKA 228 A A Sbjct: 63 AAILA 67 >gi|16265098|ref|NP_437890.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|307309480|ref|ZP_07589136.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320609|ref|ZP_07600023.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15141237|emb|CAC49750.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|306893759|gb|EFN24531.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900065|gb|EFN30685.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 219 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 36/88 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + E + + + +S+ LT RE L L G ++++IA K Sbjct: 118 RTVASGESYVAPTLSAKLLTGQLANSAPAKSNLVAELTRREQEVLHLVASGMSNKQIARK 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L L TV ++ KLD NR +A Sbjct: 178 LDLHEKTVKHHMTQIMAKLDVANRTEAA 205 >gi|118619050|ref|YP_907382.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571160|gb|ABL05911.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 218 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 15/220 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + FA+ + +R+ I + +D ++ Sbjct: 12 VDDHPIWRDAVARDLSDDGFAVVATADGVATAQRRAAIVKPDVVVMDMRLADGDGVQA-- 69 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + + + ++ G G V Sbjct: 70 --TTEVLKVSPA----TRVLVLSTSDEREDVLEAVKTGA---TGYLVKSASKAELADAVR 120 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 T+ + + Y+ I + + R +LTERET L+ G ++++ Sbjct: 121 ATAAGRAVFTPSLAGLVLGEYRRIAQTADSSQDRP----SLTERETEILRYVAKGLSAKQ 176 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IAEKL LS TV ++ + KL NR++ AI G Sbjct: 177 IAEKLSLSHRTVENHVQATFRKLQLANRVELTRYAIEHGL 216 >gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] Length = 304 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 30/58 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L G ++++I E LGLS TVN +L VKL NR A +A Sbjct: 242 ELTQREAEVLIWIAKGKSNKDIGEILGLSPRTVNKHLEQIFVKLGVENRASAAVRAAE 299 >gi|158315520|ref|YP_001508028.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110925|gb|ABW13122.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 226 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 11/128 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----------ELFKK 166 + + +G ++ L+ A I T L + Sbjct: 93 VTQALHVGASGFLGKDVGTDELLTAIRTIAGGDALLSPAATRALIARFLATPEPTATART 152 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE + L +GY++ +IA +L +S T ++ A KL+A +R Q + Sbjct: 153 NPAVLTTLTAREREVMVLVAEGYSNHDIARRLVISPLTARTHVHRAMTKLEARDRAQLVV 212 Query: 227 KAIRFGYI 234 A + G + Sbjct: 213 IAYQSGLL 220 >gi|329936313|ref|ZP_08286078.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304109|gb|EGG47990.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 39/102 (38%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 L + I S LT RE + L L +G ++ Sbjct: 128 SMAEALRRLERGKLPIPDTLARLFIRHAGRSRGTHRSPRVQLTPREQAVLGLIAEGLSNR 187 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA + G+S H V ++ + K + NR QA++ A++ G + Sbjct: 188 MIAHRFGISEHGVKRHVANLLAKFNCSNRAQAVSVALQQGLL 229 >gi|313107624|ref|ZP_07793809.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] gi|310880311|gb|EFQ38905.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] Length = 268 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 + N+A + + + D F Sbjct: 32 QTLGQFAPVHNWAALIFSDSSPLILSFMEEEIEEIEPDPLISRYITGLYL-QDPFYQVSR 90 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 + ++ + + + + + + V L + + Sbjct: 91 NCRRGGLFHLADIVSEDFETTEYYNAYFAHYVVTDEVQYNVPLDGERTLCLSL-GSESRF 149 Query: 142 ANEVIIEAHGACYQV---------ITDFLELFKKRSSAAR-----------NLTERETSC 181 E I V D + K +AA LT RE+ Sbjct: 150 GAEQIALFELLRPWVIALMKKRIHFEDAVREEAKPIAAAEVEVQPWRGLISPLTARESDV 209 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++L DGY+++EIA++L LS+ T+ + KL+ + + Sbjct: 210 IRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLNVKSHSE 251 >gi|307946995|ref|ZP_07662330.1| putative transcriptional regulatory protein SgaR [Roseibium sp. TrichSKD4] gi|307770659|gb|EFO29885.1| putative transcriptional regulatory protein SgaR [Roseibium sp. TrichSKD4] Length = 216 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 48/99 (48%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G F+ + + A A Q++ FL++ + S LT+RE + L+ G Sbjct: 104 AGAAGFSPRNGPVEGLLETCAAVAAGQMVFPFLDVRELHSDPIHLLTKREKALLEALSKG 163 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ ++A + G+S +TV +L + KL +R QA+A Sbjct: 164 LSNRQLASEFGISANTVKFHLSNLYEKLSVTSRTQAVAF 202 >gi|294013470|ref|YP_003546930.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676800|dbj|BAI98318.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 250 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +R A L++RE L+ G ++ I++++ +S TV ++ + KL NR Sbjct: 146 ALEVERPVDAACLSDRELEILRWLIMGCPNKVISKRMDISEATVKVHVKAVLRKLRVKNR 205 Query: 222 IQAIAKAIRFGY 233 QA A G Sbjct: 206 TQAAIWAANHGM 217 >gi|284031285|ref|YP_003381216.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810578|gb|ADB32417.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L G G ++ EIA +L L TV AY+ + +L NR+QA A Sbjct: 157 DVLSPRELEVLSLVGAGLSNAEIAARLFLVEGTVKAYVSAVLTRLGVKNRVQAAIIAYEA 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|218550792|ref|YP_002384583.1| HTH-type transcriptional regulator YhjB [Escherichia fergusonii ATCC 35469] gi|218358333|emb|CAQ90980.1| putative HTH-type transcriptional regulator YhjB [Escherichia fergusonii ATCC 35469] Length = 227 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A + + ++ D+L + + S + L+ R+ L + G +++E Sbjct: 129 PRDSGAETFALALNSVVMGMMFLPGDWLSMPETESRDIKTLSVRQREILTMLAAGESNKE 188 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 189 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 222 >gi|34496978|ref|NP_901193.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] gi|34102834|gb|AAQ59198.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] Length = 212 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G+ + EIA+ LG S T+ ++ S KL +R++A+ + + Sbjct: 150 ERLTGREVEVLALMAGGFNNREIADALGPSEGTIKNHVSSILSKLGVRDRVRAVLRGLEL 209 Query: 232 GYI 234 GYI Sbjct: 210 GYI 212 >gi|333024002|ref|ZP_08452066.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332743854|gb|EGJ74295.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 260 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ +IA L +S TV ++ + K +R QA+ A G Sbjct: 192 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 251 Query: 234 I 234 + Sbjct: 252 V 252 >gi|312884591|ref|ZP_07744295.1| transcriptional regulator, LuxR family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367903|gb|EFP95451.1| transcriptional regulator, LuxR family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 215 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + +IAE L + + TV + + KLDA N + A R G Sbjct: 155 LTPREKQVLKLIFEGKRNRDIAEALLIGLKTVETHRMNIMRKLDAHNVADLMKWAHRMGI 214 >gi|307325965|ref|ZP_07605164.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888457|gb|EFN19444.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 259 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 38/80 (47%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 GA +V+ NL+ RE LQL GDG T+ +IAE+L L+ TV + Sbjct: 172 GATARVMARLRGPAPSGPVELENLSPREREILQLIGDGLTNRQIAERLFLAEKTVKNRIS 231 Query: 211 SATVKLDAVNRIQAIAKAIR 230 + KL RIQA A R Sbjct: 232 AILSKLGVGRRIQAAVIAER 251 >gi|304410764|ref|ZP_07392382.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307304859|ref|ZP_07584609.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304351248|gb|EFM15648.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306912261|gb|EFN42685.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 209 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE---AHGACYQVI 157 + + + V ++ ++++E ++VI Sbjct: 69 LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVI 128 Query: 158 TDFLE--LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +D +E L++ + + +LT RE L+ +G ++ I+E L +S TV ++ Sbjct: 129 SDEVEEYLYELKDATDEQEWISSLTPRELQILEQLAEGLSNRMISEHLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|297159648|gb|ADI09360.1| putative response regulator [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 4/136 (2%) Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT 158 E+ ++ L G F G V L + Sbjct: 88 ETEEYVARALRAGASGFLGKDVTADALLTAIRTVASGDALLSPLATRALITRFLATPAPG 147 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L ++ + LT RE + LA +G ++ EIAE+L +S TV +++ A KL A Sbjct: 148 NHLAPPERLA----VLTAREREVMALAAEGMSNHEIAERLVVSPLTVRSHIHRAMTKLHA 203 Query: 219 VNRIQAIAKAIRFGYI 234 +R Q + A + G + Sbjct: 204 RDRAQLVVVAYQSGLV 219 >gi|291301776|ref|YP_003513054.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570996|gb|ADD43961.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 132 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 36/89 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + I + LTERE + + +G ++ I +L +S TV Sbjct: 43 RVLLNALAAAGIDLEPKPPVVVRPPGCRLTERELTVVIGMSNGKSNARIGRELHISEDTV 102 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y KL +R QA+A A+R G I Sbjct: 103 KTYARRLFRKLGVGDRTQAVAVALRTGLI 131 >gi|284043606|ref|YP_003393946.1| GAF modulated LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947827|gb|ADB50571.1| GAF modulated transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 277 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 152 ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + + + + SA L+ RE +L DG T+ EI +LG++++TV ++ Sbjct: 193 RFSEAQRAAVRMAHRNVSAEVRDALSARELQVFELLVDGLTNAEIGHELGIALNTVKQHV 252 Query: 210 GSATVKLDAVNRIQAIAK 227 KL A +R++A+ Sbjct: 253 RHIYEKLGARSRVEAVRM 270 >gi|261218338|ref|ZP_05932619.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261320813|ref|ZP_05960010.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|260923427|gb|EEX89995.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293503|gb|EEX96999.1| two component transcriptional regulator [Brucella ceti M644/93/1] Length = 157 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA Sbjct: 84 ESPIARLRTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 143 Query: 225 IAKAIRFG 232 + R G Sbjct: 144 VILLSRIG 151 >gi|258654847|ref|YP_003204003.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558072|gb|ACV81014.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 233 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 4/116 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT----DFLELFKKRSSAARNLTER 177 + G L+ + + +T + + + A LTE+ Sbjct: 116 IMAGAAGYVLKQIRGSDLVDSVRRVAAGQSLLDPAVTARVLERVRKGPELDPALAPLTEQ 175 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L G+G T+ +IAE + L+ TV Y+ S KL R QA A + Sbjct: 176 ERRVLALIGEGMTNRQIAEAMFLAEKTVKNYVSSLLAKLGLQRRTQAALFAAKHHL 231 >gi|238059874|ref|ZP_04604583.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881685|gb|EEP70513.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 217 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V+ +E + +SA LT+RE L DG ++ EI ++ LS TV ++ + Sbjct: 128 VSRTVVDWRVENGEDAASAIARLTDREREILVHVADGLSNAEIGTRMYLSGGTVKDHVSA 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A R G + Sbjct: 188 ILTKLKVTSRVQAALIAQRAGLL 210 >gi|222085009|ref|YP_002543538.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722457|gb|ACM25613.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 213 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + I+ + G +++ ++ A E + + D L + Sbjct: 84 MLSMHDSREYISSSIMHGAVGYILKDVSTDEVVCAIETVASGGTYFSSGVRDILMADEAG 143 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A+ LT RE L L G ++ EIAE+LG++ T + + KL I Sbjct: 144 MEAS-PLTPREHHILGLIVTGRSNREIAEELGITPATAETHRKNLKRKLGIATTAGLIRY 202 Query: 228 AIRFGY 233 A+ G Sbjct: 203 ALDHGI 208 >gi|170756196|ref|YP_001781032.1| LuxR family DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121408|gb|ACA45244.1| DNA-binding response regulator, LuxR family [Clostridium botulinum B1 str. Okra] Length = 217 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL S NLTERE + ++ +G++++EIAE++ LS T+ + + KLD +R Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDR 203 Query: 222 IQAIAKAIRFGYI 234 Q A + + Sbjct: 204 TQIAIFAFKNNIV 216 >gi|251795693|ref|YP_003010424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] gi|247543319|gb|ACT00338.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] Length = 866 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 137 EFLMLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 L E+ A+ ++ + + + LT RE L+ G+G ++EEI Sbjct: 767 SEASLDEEMAAYANLLRERISEGGWTASYARMKDNLTVKLTGREREVLRKIGEGLSNEEI 826 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV Y + KL NR+QAI++A G + Sbjct: 827 GGQLFLSTGTVKKYAYNIYEKLQVKNRVQAISRAKEMGLL 866 >gi|149914006|ref|ZP_01902538.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149812290|gb|EDM72121.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 17/155 (10%) Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNGYVIFTSEFLMLANEVII 147 S + + + GY++ ++ + +++ Sbjct: 60 PDGSGVEAVHACAAADWLVDAVVVSIFGDEARVLEAIQAGAKGYLLKGADLGQIGTDILS 119 Query: 148 EAHG---ACYQVITDFLELFKK-----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 G + L + K LTERE LQ GY EIA+ LG Sbjct: 120 VLDGGSPISPGIARHLLAVVKDGGTGSVEPGLSPLTEREAEILQAVARGYKRHEIAQHLG 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV ++ S KL+ ++A+A+A + G++ Sbjct: 180 ISAGTVGNHITSIYRKLEVSTNMEAVARASKKGFL 214 >gi|159039733|ref|YP_001538986.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918568|gb|ABV99995.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 228 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 18/161 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + + +A V +I + ++ + + Sbjct: 68 LDVHMPEGGGRAVLEAIRRTHPHVRFLALSVSDAAEDVIGLIRSGARGYVTKTISPDDLA 127 Query: 148 EAHGA--------CYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193 A ++ L+ F R LT RE L+L GY +E Sbjct: 128 AAVRRVADGDAVFSPRLAGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKE 187 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA++L +S+ TV ++ + KL +R + A + Sbjct: 188 IAKELYISIKTVETHVSNVLRKLQMSSRYELSRWAADRRLV 228 >gi|330467583|ref|YP_004405326.1| two component system response regulator [Verrucosispora maris AB-18-032] gi|328810554|gb|AEB44726.1| two component system response regulator [Verrucosispora maris AB-18-032] Length = 227 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 35/76 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 S LT RE L L G T++E+AE++ SV T ++ +KL A Sbjct: 140 AARSHEPPASPGLDQLTAREREVLMLIARGLTNQELAERMSCSVATAKTHVSRVMMKLGA 199 Query: 219 VNRIQAIAKAIRFGYI 234 +R+Q + A +G + Sbjct: 200 RDRVQVVVLAYEWGLV 215 >gi|326559661|gb|EGE10074.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 46P47B1] gi|326559921|gb|EGE10320.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 103P14B1] gi|326561209|gb|EGE11574.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 7169] gi|326566300|gb|EGE16451.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 12P80B1] gi|326567904|gb|EGE18001.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis BC1] gi|326569517|gb|EGE19577.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis BC8] gi|326572718|gb|EGE22704.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis BC7] gi|326573892|gb|EGE23844.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 101P30B1] gi|326577343|gb|EGE27230.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis O35E] Length = 218 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ ++ LTERE ++ G +++ I KLG++ TV ++ K+ R++ Sbjct: 152 KTDSSHELTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAV 211 Query: 227 KAI 229 A+ Sbjct: 212 WAV 214 >gi|313836389|gb|EFS74103.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928854|gb|EFS92685.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971268|gb|EFT15366.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328906399|gb|EGG26174.1| putative two-component response regulator [Propionibacterium sp. P08] Length = 224 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|300897182|ref|ZP_07115632.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300359034|gb|EFJ74904.1| response regulator receiver domain protein [Escherichia coli MS 198-1] Length = 216 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 94 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELISAVHTVATGGCYLTPDI--AIKL 150 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 151 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 210 Query: 227 K 227 + Sbjct: 211 R 211 >gi|298241349|ref|ZP_06965156.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554403|gb|EFH88267.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + L EV+ + ++ LTERE L+ G S+EI Sbjct: 126 ARGDIFLQPEVMARILVRTTDAF--HPTPSRSQAEGESELTERERDVLEAVACGERSKEI 183 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +LG+S+ TV ++L S KL +R A+A I+ G + Sbjct: 184 ASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGIKRGLL 223 >gi|291297909|ref|YP_003509187.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567129|gb|ADD40094.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ERET L G ++ EI +L ++ TV + KL A +R A+A+A R Sbjct: 71 RGLSERETQVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRI 130 Query: 232 GYI 234 G + Sbjct: 131 GIL 133 >gi|256380091|ref|YP_003103751.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924394|gb|ACU39905.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H + L +L+ +E L L +G T+ +IA +L L+ TV Y Sbjct: 127 LHAGVTATVLQRLRGGPVEDPRYASLSPQERRILDLIAEGLTNRQIAGRLFLAEKTVKNY 186 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + S KL R +A A + Sbjct: 187 VSSLLHKLGFDRRTEAGVYAAKR 209 >gi|226228812|ref|YP_002762918.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226092003|dbj|BAH40448.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 207 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G +++ I L +S TV ++ + KLDA +R A+ AIR Sbjct: 143 EGLTSRELQILHLVAGGLSNKRITSSLAISEDTVKGHVSNILSKLDANDRTHAVTLAIRR 202 Query: 232 GYI 234 G I Sbjct: 203 GVI 205 >gi|209696260|ref|YP_002264190.1| probable CsgAB operon transcriptional regulatory protein [Aliivibrio salmonicida LFI1238] gi|208010213|emb|CAQ80542.1| probable CsgAB operon transcriptional regulatory protein [Aliivibrio salmonicida LFI1238] Length = 215 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RE L+L G ++ +IA L +S +TV +L + KL+ NR+QA+ Sbjct: 150 SLTTREKEILKLLSLGASNIDIANTLFVSENTVKTHLHNVFKKLNVKNRLQAMIW 204 >gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G ++ +I ++L LS T+ ++ S K NR + + AI G Sbjct: 146 LTQREKDVLALLVAGLSNAQIGDRLHLSARTIEKHVSSLFQKTAVHNRAELVRLAIEQGL 205 Query: 234 I 234 + Sbjct: 206 V 206 >gi|332291578|ref|YP_004430187.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] gi|332169664|gb|AEE18919.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] Length = 476 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 37/70 (52%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L+ + S NL++RET L GYT+++I E+L +S+ TV + + KLD Sbjct: 405 ERTLQESVAQLSTTHNLSKRETEVLLELSKGYTNKQIGEELHISIATVKFHTSNIYAKLD 464 Query: 218 AVNRIQAIAK 227 NR + I K Sbjct: 465 VSNRSEVIEK 474 >gi|323160954|gb|EFZ46875.1| transcriptional regulatory protein uhpA domain protein [Escherichia coli E128010] Length = 145 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 23 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 79 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 80 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 139 Query: 227 K 227 + Sbjct: 140 R 140 >gi|312138551|ref|YP_004005887.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311887890|emb|CBH47202.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 245 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + ++ + L+++E + L G G T+ EIAE+L L+ T+ Y Sbjct: 160 LDSRATAALMQRMR-SERTADPLAELSDQERAVFDLIGQGLTNREIAERLFLAEKTIKNY 218 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + KL R QA A Sbjct: 219 VSRLLAKLGMQRRTQAAVLATEL 241 >gi|260433757|ref|ZP_05787728.1| transcriptional regulatory protein DegU [Silicibacter lacuscaerulensis ITI-1157] gi|260417585|gb|EEX10844.1| transcriptional regulatory protein DegU [Silicibacter lacuscaerulensis ITI-1157] Length = 213 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 156 VITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 L + K + LT RE L+ G +++EIA +L + TV Y+ Sbjct: 130 ASRVLLAIQKGNTPTGDRGVLGDLTHREEEILRRVAKGLSNKEIAAELSIQEKTVKHYMT 189 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 S KL A NR++A A Sbjct: 190 SILSKLHARNRVEAALIAHEA 210 >gi|209863937|gb|ACI88882.1| AlnR5 two component response regulator [Streptomyces sp. CM020] Length = 201 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + L I A +VI L L A+ LT RE L+LA G IA+ Sbjct: 105 DALPSELAQAIRKVAAGQRVIDPQLALM-AWDGPAQQLTPREVDVLRLAAAGEDVRVIAK 163 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS+ TV YL + KL A NR+ A+ A G I Sbjct: 164 ELHLSIGTVRNYLTTIVHKLGARNRVDAVRIARDNGVI 201 >gi|148240284|ref|YP_001225671.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147848823|emb|CAK24374.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 241 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 5/118 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNLTE 176 + G H V + I+ V+ +S + LT Sbjct: 114 IEAGCHGICAVQSAGTGAVATAFTAIDSDGQYLDPLISGVLHHSRLPSSGQSLPLQELTM 173 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G ++E IA L +S+ TV +++ S KL A +R A+ A R G + Sbjct: 174 REEDVLRGLCRGMSNEAIANDLVVSIETVKSHVSSLLRKLAAKDRTAAVVTAFREGLV 231 >gi|145594340|ref|YP_001158637.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303677|gb|ABP54259.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 39/121 (32%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + + V + E + A + Sbjct: 106 LRAGASGFLLKNGTPEALVAAIRVVARGEGLIAPELTRRVIAAFARPGGEPTTTAVALSD 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA L L TV ++ KL +R+QA+ A G Sbjct: 166 LTPREHEVLVLVASGASNAEIAANLRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGV 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|302525609|ref|ZP_07277951.1| predicted protein [Streptomyces sp. AA4] gi|302434504|gb|EFL06320.1| predicted protein [Streptomyces sp. AA4] Length = 1006 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L+ G T+ ++ E+L +S TV+ +L KL A R +A+A A Sbjct: 937 PQVDPLTDRERDVLERVALGRTNRQVGEELYISEKTVSVHLSRVMAKLGASRRAEAVAIA 996 Query: 229 IRFGYI 234 G + Sbjct: 997 YDRGLL 1002 >gi|300855506|ref|YP_003780490.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435621|gb|ADK15388.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 824 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL++RE L L G ++A KLG+S T +L + KL + +A+ A +G Sbjct: 763 NLSQRELEVLSLTAKGLKRTQVACKLGISESTAKTHLQNIYKKLQVSGKFEAVKIARMYG 822 Query: 233 YI 234 I Sbjct: 823 II 824 >gi|240948096|ref|ZP_04752506.1| CitB protein [Actinobacillus minor NM305] gi|240297576|gb|EER48068.1| CitB protein [Actinobacillus minor NM305] Length = 201 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +S LT+RE +L G+ ++EIA+KL LS TV+ + +A KL+ N + Sbjct: 131 VSSRNNSPIEQLTKREREICELLIQGFDAKEIADKLNLSFKTVHVHRANAMSKLNVKNNV 190 Query: 223 QAI 225 + Sbjct: 191 ELA 193 >gi|256423275|ref|YP_003123928.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038183|gb|ACU61727.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 213 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE LQL +G S IAE+L +S TV + + K N + + +A Sbjct: 149 TIPELTKREKQILQLLAEGRKSAAIAEELFISPLTVKTHRATLLHKFQVSNIVTLVNRAK 208 Query: 230 RFGYI 234 G I Sbjct: 209 ETGLI 213 >gi|182413500|ref|YP_001818566.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840714|gb|ACB74966.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 220 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + L V + ++ K A L+ RE L L +G Sbjct: 115 AAIRLTARGESFLEPSVTAKVLAHFSRLAQQAPRPPKPPPPLAEPLSVREREVLGLLAEG 174 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++EIA L ++ TV ++ + KL A++R QA + G + Sbjct: 175 RSNKEIASALAIAEGTVKNHMSNVLGKLGALDRTQAALRGRELGLV 220 >gi|209547437|ref|YP_002279355.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538681|gb|ACI58615.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 959 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 5/150 (3%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIE 148 E +S LS + V G G F L + + Sbjct: 807 DLDAWEAAAQSWADLSQPFRQAYALMQAGSAAVNAGKRARGADHFGRAADLAHSIGARLL 866 Query: 149 AHGA---CYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A+ + D + + A+ LT+RE L+L G ++ EIA+ L +S T Sbjct: 867 ANQIETLAAKARIDLRGGKEGSTPKAKLGLTDREFEVLRLVAAGQSNREIADNLFISSKT 926 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + ++ + KL +R A A A R + Sbjct: 927 ASVHVSNILSKLAVPSRGAAAAMAHRLRIV 956 >gi|56459266|ref|YP_154547.1| response regulator [Idiomarina loihiensis L2TR] gi|56178276|gb|AAV80998.1| Response regulator, LuxR family (CheY-HTH) [Idiomarina loihiensis L2TR] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT +E ++L G ++EIAE L +S HTV +L S K A NR++ + Sbjct: 153 SLTPQELKVIELVATGARNKEIAEHLNISAHTVKTHLSSIFRKTGARNRVELLKW 207 >gi|288924538|ref|ZP_06418483.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344115|gb|EFC78699.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 72/214 (33%), Gaps = 17/214 (7%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L + + ++ + AR+ + + A + I LH + Sbjct: 12 LDDHEIVRNGLRQTL-ARHDDIEVVGEAGLAAEALRRIPALHPHVAVLDGRLPDGSGIDV 70 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + G+ +I S ++ + S+ + G + +R Sbjct: 71 CREIRSALPGVACLILTSYDDDEALFSA---IMAGAAGYVLKE-----IRGNDLVGAIRT 122 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 S +LA V + + + L A L +RE LQL DG T+ + Sbjct: 123 VASGQSLLAPSV--------TRRVLERLRDGPHEDPAMATLNQREREILQLIADGLTNRQ 174 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I +LGLS TV Y+ S KL +R QA Sbjct: 175 IGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVY 208 >gi|226315402|ref|YP_002775298.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226098352|dbj|BAH46794.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 596 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 4/89 (4%) Query: 150 HGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +V + ++ + LT+RE LQL DG + IA KL LS TV Sbjct: 508 QLIATRVFEEMKRQREQLEKYSPNDPYGLTKREREILQLLSDGLRYKSIATKLYLSEGTV 567 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y + KL NR +AI A + Sbjct: 568 RNYCSTLYSKLGVSNREEAIELARTENIL 596 >gi|91227214|ref|ZP_01261673.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269967094|ref|ZP_06181162.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|91188742|gb|EAS75030.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269828353|gb|EEZ82619.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] Length = 212 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G +S++IA L +S TV + + KLD + + A G Sbjct: 150 PLSRREEAVLKLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209 Query: 233 Y 233 Sbjct: 210 L 210 >gi|254228131|ref|ZP_04921560.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262393907|ref|YP_003285761.1| transcriptional regulator LuxR family protein [Vibrio sp. Ex25] gi|151939204|gb|EDN58033.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262337501|gb|ACY51296.1| transcriptional regulator LuxR family protein [Vibrio sp. Ex25] Length = 212 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G +S++IA L +S TV + + KLD + + A G Sbjct: 150 PLSRREEAVLKLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209 Query: 233 Y 233 Sbjct: 210 L 210 >gi|116621908|ref|YP_824064.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225070|gb|ABJ83779.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+R+ LQL +G ++EI E +SV TV + +L A + + AI+ Sbjct: 148 PALTDRQRHILQLLAEGKQNKEIGEIAHISVRTVEFHRSRLMSRLGAHSVAELTRFAIQE 207 Query: 232 GYI 234 G I Sbjct: 208 GLI 210 >gi|297563175|ref|YP_003682149.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847623|gb|ADH69643.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 225 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 44/127 (34%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 +G + +E + + L Sbjct: 99 ARALSGGASGFVLKSGDPRQLVEGLRAVAEGGAYLSPEVARRVIDELDASGGRLSRASAA 158 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L L G G +++EIA +L ++ TV ++GS +LD NR+QA Sbjct: 159 RERVGRLTERERGVLALVGQGCSNDEIARRLAIAPGTVKVHVGSILTRLDVRNRVQAAVV 218 Query: 228 AIRFGYI 234 A G + Sbjct: 219 AYEAGLV 225 >gi|256787147|ref|ZP_05525578.1| two component system response regulator [Streptomyces lividans TK24] gi|289771044|ref|ZP_06530422.1| two-component system response regulator [Streptomyces lividans TK24] gi|289701243|gb|EFD68672.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARN--- 173 L G+++ S+ L + V A +++T+ RS + Sbjct: 94 LDQGVAGFLLKASDPRDLISGVRAVASGGSCLSPLVARRLMTELRRAPSPRSEVSGERTT 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L + G G ++ EIA++L L T+ Y+ + +L+ NR+QA A G Sbjct: 154 LLTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|239945267|ref|ZP_04697204.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239991728|ref|ZP_04712392.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291448730|ref|ZP_06588120.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291351677|gb|EFE78581.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 250 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + +LT RE L G ++ E+A +L L+ Sbjct: 138 DALLAPAITRRLVRRFAQHGSGTAALHRDLASLTPRELEVFGLLARGLSNAELAARLHLA 197 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ KL +R+QA+ A G + Sbjct: 198 EATVKTHVARILAKLGLRDRVQAVIVAYETGLV 230 >gi|170760443|ref|YP_001786768.1| LuxR family DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407432|gb|ACA55843.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A3 str. Loch Maree] Length = 217 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + NLTERE + ++ +G +++EIAEK+ LS T+ + + KLD +R Sbjct: 144 ELNDDDINLKYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDR 203 Query: 222 IQAIAKAIRFGYI 234 Q A + + Sbjct: 204 TQIAIFAFKNNIV 216 >gi|118581564|ref|YP_902814.1| two component LuxR family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504274|gb|ABL00757.1| two component transcriptional regulator, LuxR family [Pelobacter propionicus DSM 2379] Length = 203 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 8/123 (6%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY---QVITDFLELFKKRSS 169 I + G + E++ + + Sbjct: 79 IILTMHDDPLMYGRAVSAGAHGFILKDDAYEELLSALRTVAAGGTAISRAIQHAAIEPEP 138 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE L L G T+ IA+ LG+S+ TVN + + KL+ + + + ++ Sbjct: 139 PVAELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRTNLMGKLNLHSTAELVRYSL 198 Query: 230 RFG 232 G Sbjct: 199 LTG 201 >gi|94311025|ref|YP_584235.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354877|gb|ABF08966.1| transcriptional regulator, luxR family [Cupriavidus metallidurans CH34] Length = 217 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE ++ G +++ IA LG++ TV ++ + KL+ +R+Q A+ Sbjct: 153 AAPLTARERDIVRGLVRGESNKMIARALGVAESTVKIHVQNILKKLNLASRVQVAVYAVE 212 Query: 231 FGY 233 G Sbjct: 213 HGL 215 >gi|323155344|gb|EFZ41527.1| transcriptional regulatory protein uhpA [Escherichia coli EPECa14] Length = 173 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 51 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 107 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 108 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 167 Query: 227 K 227 + Sbjct: 168 R 168 >gi|239930061|ref|ZP_04687014.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438397|ref|ZP_06577787.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341292|gb|EFE68248.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 227 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 3/113 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETS 180 V +G + + +LA + + + LT RE S Sbjct: 107 VHAAELLHGIRVVAAGESVLAPSATRRL--IGHYASGAVTGIGGGSTPRELDGLTARERS 164 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G T+ EI +LG++V TV +++ + KL +R+QA A G Sbjct: 165 VLALVASGLTNAEIGGQLGITVGTVKSHVNALLRKLGLRDRVQATILAYDLGL 217 >gi|168184300|ref|ZP_02618964.1| DNA-binding response regulator, LuxR family [Clostridium botulinum Bf] gi|237794731|ref|YP_002862283.1| LuxR family DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672663|gb|EDT84624.1| DNA-binding response regulator, LuxR family [Clostridium botulinum Bf] gi|229261330|gb|ACQ52363.1| DNA-binding response regulator, LuxR family [Clostridium botulinum Ba4 str. 657] Length = 217 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL S NLTERE + ++ +G +++EIAE++ LS T+ + + KLD +R Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDR 203 Query: 222 IQAIAKAIRFGY 233 Q A + Sbjct: 204 TQIAIFAFKNNI 215 >gi|159898031|ref|YP_001544278.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891070|gb|ABX04150.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 876 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + +L+ S L++RE L L G++++ I ++L L++ TV + Sbjct: 790 QILAHFTTERMPQLYPTTPSLPEMLSQRELEILSLIAQGHSNQAICQQLHLALDTVKGHN 849 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL R +A+A+A G + Sbjct: 850 RRIFEKLQVQRRTEAVARARELGLL 874 >gi|297580291|ref|ZP_06942218.1| transcriptional regulator UhpA [Vibrio cholerae RC385] gi|297535937|gb|EFH74771.1| transcriptional regulator UhpA [Vibrio cholerae RC385] Length = 208 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + + I E+ L RL F I + G Sbjct: 40 FHALTQSE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + S+ + V C + + ++ +LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 157 VQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205 >gi|333029774|ref|ZP_08457835.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM 18011] gi|332740371|gb|EGJ70853.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM 18011] Length = 206 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 I++ H ++ + + L+ RE + L G T++EIA+KL +S TV Sbjct: 114 IMDLHRNAHEP-NHSKNMEAINAHQVHELSPREIDVISLIAVGKTNKEIAKKLSISQTTV 172 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + T KL + A+ GYI Sbjct: 173 ITHRKNITDKLGIKSVSGLTIYAVINGYI 201 >gi|326331931|ref|ZP_08198217.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325950244|gb|EGD42298.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G + +IA++L LS TV ++ + KL NR++ AI G Sbjct: 156 LTDRETEILKLVAKGLSYRQIADRLVLSHRTVQNHVQNTLRKLQMHNRVELTRYAIEQGL 215 >gi|296112985|ref|YP_003626923.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis RH4] gi|295920679|gb|ADG61030.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis RH4] gi|326574060|gb|EGE24009.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis CO72] Length = 218 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ ++ LTERE ++ G +++ I KLG++ TV ++ K+ R++ Sbjct: 152 KTDSSHELTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAV 211 Query: 227 KAI 229 A+ Sbjct: 212 WAV 214 >gi|222106444|ref|YP_002547235.1| two component response regulator [Agrobacterium vitis S4] gi|221737623|gb|ACM38519.1| two component response regulator [Agrobacterium vitis S4] Length = 216 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 4/117 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTER 177 V+ G + L+ +++ + + R+S A LT R Sbjct: 96 VKAGASGYALKDVRRDTLLRMIRAVLDGQEFFDTGLVRRMLTRVSRTSPAEDAISQLTTR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQ G T++EIA +L ++ TV ++ KL +R QA A + G + Sbjct: 156 EREILQEVARGATNKEIARRLSIAPGTVKVHVERIIAKLRVGDRTQAAVLAAQAGLV 212 >gi|222106434|ref|YP_002547225.1| two component response regulator [Agrobacterium vitis S4] gi|221737613|gb|ACM38509.1| two component response regulator [Agrobacterium vitis S4] Length = 779 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Query: 146 IIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 I+E A L + R ++A LT++E L + +G +++ IA G+S Sbjct: 686 IVEFVMAATPARAILRRLDRGRHSSLAAARTRLTQQELKILTMLAEGASNKLIARNSGIS 745 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + KL R +AIA A G++ Sbjct: 746 EPTVKFHLKNVYRKLGCSRRHEAIAAAKALGWV 778 >gi|167763338|ref|ZP_02435465.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC 43183] gi|167698632|gb|EDS15211.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC 43183] Length = 203 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 151 GACYQVITDFLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 C V L + ++ L T E S L+ G T++EIA + LS HTV Sbjct: 108 FICNHVSNLLLSGNNQSAAPHPTLQNALLTPAERSILKEIALGKTTKEIAAERNLSFHTV 167 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N++ + KL+ N +A A++ G + Sbjct: 168 NSHRKNIFRKLNVNNAHEATKYAMKAGIV 196 >gi|149203886|ref|ZP_01880855.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149143003|gb|EDM31045.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 202 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCL 182 ++G F + L + V H + T DFLE + + LT RET L Sbjct: 91 RALRSGAAGFLPKTLDPQSLVAAVHHMLLGETYTPLDFLETGESEAEGPVRLTPRETDVL 150 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA L + TV +L + + KL A NR A A G Sbjct: 151 VGILHGKSNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTHAAMIARDMGL 201 >gi|126173037|ref|YP_001049186.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|153002219|ref|YP_001367900.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|160876940|ref|YP_001556256.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|125996242|gb|ABN60317.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] gi|151366837|gb|ABS09837.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] gi|160862462|gb|ABX50996.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315269144|gb|ADT95997.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 209 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE---AHGACYQVI 157 + + + V ++ ++++E ++VI Sbjct: 69 LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVI 128 Query: 158 TDFLE--LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +D +E L++ + + +LT RE L+ +G ++ I+E L +S TV ++ Sbjct: 129 SDEVEEYLYELKDATDEQEWISSLTPRELQILEQLAEGLSNRMISEHLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|327438849|dbj|BAK15214.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 217 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E +Q G GY++++IA L +S +TV ++ KL+ +R Q A G Sbjct: 149 LTTKEKEVMQKLGMGYSNKQIAHSLYISENTVKKHVSQVLSKLELGDRTQVALFANETGL 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|302540485|ref|ZP_07292827.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458103|gb|EFL21196.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 215 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 13/152 (8%) Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-------EFLMLANEVIIE 148 +L L L + F + + L + Sbjct: 57 PGAMPPEELCRELRELLPNAVIVIFSACSDASVLHSCLVAGANGCLLKDASELDVGAALR 116 Query: 149 AHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 A A V+ + E+ K R+ LT+RE L L G ++ +IA++L LS Sbjct: 117 ALLAGQFVLDPRVAKQLAPEIIKPRTGGTVRLTDREQEVLTLLAHGCSNRKIAQQLCLSE 176 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV Y+ KLDA +R++A+ + G + Sbjct: 177 TTVKGYVTDLLQKLDASSRLEAVVRGCELGLV 208 >gi|227894641|ref|ZP_04012446.1| response regulator [Lactobacillus ultunensis DSM 16047] gi|227863536|gb|EEJ70957.1| response regulator [Lactobacillus ultunensis DSM 16047] Length = 223 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +NL++ E +Q G G T++EIA+KL LS TV Y+ L +R Q A++ Sbjct: 155 KNLSKSEWQVIQQVGLGRTNKEIAQKLFLSEGTVRNYISKILSCLQLRDRTQLAIWAVQK 214 Query: 232 GYI 234 G I Sbjct: 215 GVI 217 >gi|223935142|ref|ZP_03627060.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896026|gb|EEF62469.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLTERE LQL +G +++IA +LG+S+ TV + KL+ + AI G Sbjct: 155 NLTEREAEVLQLIAEGQANKQIASELGISIKTVEKHRQQVMNKLNIHDVAGLTRYAISKG 214 Query: 233 YI 234 I Sbjct: 215 VI 216 >gi|330821495|ref|YP_004350357.1| Response regulator, NarL-family protein [Burkholderia gladioli BSR3] gi|327373490|gb|AEA64845.1| Response regulator, NarL-family protein [Burkholderia gladioli BSR3] Length = 236 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + L+ RE L + G T+ EI+E L LS TV ++ + KL +R Sbjct: 164 LPSRNGAPPVRLSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRT 223 Query: 223 QAIAKAIRFGYI 234 QA+ +A G + Sbjct: 224 QAVFEARAHGLL 235 >gi|94312507|ref|YP_585717.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356359|gb|ABF10448.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 228 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GYV+ + L + G + + + S LT RE L Sbjct: 114 RAGARGYVLKDAPADELLAAIQAVLAGRVFYSARIARGMAAQAVSPLDALTPRERDILHG 173 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RFGY 233 G G +++IA +LG+SV TV + + KL R + + A+ + G Sbjct: 174 IGRGQANKDIAVQLGVSVRTVETHRLNLKRKLGIEGRAELVKYAVQQLGL 223 >gi|327406023|ref|YP_004346861.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321531|gb|AEA46023.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 205 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Query: 144 EVIIEAH----GACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 E I+E H ++ L K + + +++RE L L GY +EIA+KL Sbjct: 113 EAILELHEGGSPMSPKIARKVLQSFNKAENPVLQLISKREREVLDLLSKGYLYKEIADKL 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +++ TV +L KL N+ +A+ K Sbjct: 173 NITLSTVKRHLNHIYEKLQVQNKTEAVNK 201 >gi|327254678|gb|EGE66294.1| transcriptional regulatory protein uhpA [Escherichia coli STEC_7v] Length = 205 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147 I E+ L RL F I + + L E ++ Sbjct: 49 IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 108 Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A H C I L + + A LT RE L G + +EIA KL Sbjct: 109 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 167 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV+ + + KL+ + I+ + A+ + Sbjct: 168 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 202 >gi|269148498|gb|ACZ28637.1| two component transcriptional regulator LuxR family [uncultured organism] Length = 203 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 5/98 (5%) Query: 137 EFLMLANEVIIEAHGACYQVI-----TDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 +F+ E + ++ E LT RE +Q DG ++ Sbjct: 101 DFIEKPFEDEVLLESIHDAIVLDAKNRQLAEREADIRRRCERLTPREKEVMQHIADGKSN 160 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +EIA L LS TV + K++ + + + A+ Sbjct: 161 KEIAALLELSHRTVEVHRARLMEKMEVKSLAELVPMAL 198 >gi|302538423|ref|ZP_07290765.1| response regulator [Streptomyces sp. C] gi|302447318|gb|EFL19134.1| response regulator [Streptomyces sp. C] Length = 223 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E +++ + +LT RE L+L G+ + IA +L LS TV Sbjct: 135 EIAARLSELLAGGRRRDAGQLFP--SLTSREVEVLELIARGHDNRRIARELVLSEKTVRN 192 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL +R +A+A+A G Sbjct: 193 HITHVFEKLQVTSRAEAVARARDAGL 218 >gi|284045220|ref|YP_003395560.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949441|gb|ADB52185.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 223 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193 + ++ + + D LT RE L G T+ E Sbjct: 121 GGDAVVAPRVTRALLDTFAHHLPADAAAPVPPHEHPRLSELTAREHEVLLELAAGRTNAE 180 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE+L LS TV ++G KL +R+QA+ A + G + Sbjct: 181 IAERLVLSEATVKTHVGRILGKLALRDRVQAVILAYQIGLV 221 >gi|255692220|ref|ZP_05415895.1| transcriptional regulator [Bacteroides finegoldii DSM 17565] gi|260622084|gb|EEX44955.1| transcriptional regulator [Bacteroides finegoldii DSM 17565] Length = 219 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E + L+ G T++EIA + LS HT+N++ + KL N +A A+R G Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211 Query: 234 I 234 + Sbjct: 212 V 212 >gi|237799774|ref|ZP_04588235.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022629|gb|EGI02686.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 534 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--------LFKKRSSAARN 173 + T +V LE L + + + Sbjct: 413 LHAAAGGALLPFRTLLGEHAQWLHEQLLQAPHCKVRNALLEKFPACFIPLTPEPAHGSDC 472 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 473 LSVRELGVLQLIAKGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 532 Query: 234 I 234 + Sbjct: 533 L 533 >gi|228918188|ref|ZP_04081692.1| Response regulator receiver [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841468|gb|EEM86607.1| Response regulator receiver [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 592 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLE---LFKKRSSAARN 173 +R G S L + ++ H +++ D E + + Sbjct: 471 IRNGADGYLLKSIDSRELAESIRLVYRGGTMINHDLFHRMWEDKEETGLVESRLDGIEYG 530 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + IA L LS TV Y + KL NR +A+ KA G Sbjct: 531 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDKGL 590 Query: 234 I 234 + Sbjct: 591 L 591 >gi|170766690|ref|ZP_02901143.1| transcriptional regulator, LuxR family [Escherichia albertii TW07627] gi|170124128|gb|EDS93059.1| transcriptional regulator, LuxR family [Escherichia albertii TW07627] Length = 200 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K ++L+ R+ L + G +++EI L +S TV A+L S +L+ NR QA Sbjct: 133 EKDMKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQA 192 Query: 225 IAK 227 Sbjct: 193 AMM 195 >gi|200387363|ref|ZP_03213975.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604461|gb|EDZ03006.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 200 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195 >gi|167573291|ref|ZP_02366165.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 205 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 6/117 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARNLTE 176 +R G + + S ++ + A + + + LT Sbjct: 82 IRFGASGY-LLKWCSPDGIVQAVRRVMAGRVHIDPSLDEARVASAAGGRTLAPPVDKLTR 140 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L DG + EIA L +S TV+ + KL A N I A R+GY Sbjct: 141 REKQILKLIADGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 197 >gi|152981542|ref|YP_001354963.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281619|gb|ABR90029.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 320 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 18/126 (14%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--------ACYQVITDFLELFKKRSSAARN---- 173 +GYV+ ++ L + +++ H +V+ + K + + Sbjct: 187 AGASGYVLKDADRLDIVR-ALLDLHAGGSPISPTIARKVLGRVRDGKKAPDAVSDASGAE 245 Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE++ L L G + E+A +L LSV T+ ++ + KL +R +A+ +A Sbjct: 246 TEQVALTKRESTILDLIARGDSYGEVARQLSLSVGTIQTHIKNIYDKLSVHSRGEAVYEA 305 Query: 229 IRFGYI 234 R G + Sbjct: 306 NRRGLL 311 >gi|1066155|dbj|BAA09943.1| ESA36 [Streptomyces thermoviolaceus] Length = 334 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 76/228 (33%), Gaps = 15/228 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++ L+ + RL + + A ++ + + D + Sbjct: 118 DSEQLIGLEAIRVRLAELARSARVE-----VATFAPGGAHDEEDLAASREPNADLLERGV 172 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + Y D H L + W + + + + + P+ Sbjct: 173 RMRTVYLDSVRNHP-PTLQHVRW---LHQHGGQVRTVPDLPIRMVIFDRKQAVLPIDTAD 228 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + G V+ + V + L A+++ +E + L++ Sbjct: 229 ARAGGVVCA------ERVTVAALCALFESVWQTAVPLGTVPKCGAKDMPPQERAVLKMLA 282 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GYT E IA++LG+S T S +LDA +R +A A++ G++ Sbjct: 283 QGYTDEAIAKRLGVSPRTARRIAASLMERLDARSRFEAACYAVQDGWL 330 >gi|85702824|ref|ZP_01033928.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] gi|85671752|gb|EAQ26609.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] Length = 202 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSAARNLTERETSC 181 + + + FL + + ++ DFLE + +LT RET Sbjct: 90 RRALRSWAAGFLPKTLDPQSLVAAVHHMLLGETYTPLDFLESGDTEAEGKVHLTPRETDV 149 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG +++EIA L + TV +L + + KL A NR QA A G Sbjct: 150 LVGVLDGKSNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTQAAMIARDMGL 201 >gi|298251729|ref|ZP_06975532.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546321|gb|EFH80189.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 8/127 (6%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 AG + + + I +++ + F S ++ Sbjct: 100 GLRAGACGYLLKDTDRETLFHAIRT---ASRGDIFLQPEVMARILVRTTDAFHPTPSRSQ 156 Query: 173 N-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L+ G S+EIA +LG+S+ TV ++L S KL +R A+A Sbjct: 157 AEGESELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAV 216 Query: 228 AIRFGYI 234 I+ G + Sbjct: 217 GIKRGLL 223 >gi|260590788|ref|ZP_05856246.1| transcriptional regulator [Prevotella veroralis F0319] gi|260537274|gb|EEX19891.1| transcriptional regulator [Prevotella veroralis F0319] Length = 217 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 33/85 (38%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H C L LT+ E L+ G + EIAEK S HTVN + Sbjct: 126 HYLCQHAANMLLAPVAIPEKERVRLTKTEIEVLKDIALGMKTREIAEKRISSFHTVNTHR 185 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + K+ N +A AIR G + Sbjct: 186 KNIFRKIGVNNAHEATRYAIRTGLV 210 >gi|254777627|ref|ZP_05219143.1| hypothetical protein MaviaA2_23561 [Mycobacterium avium subsp. avium ATCC 25291] Length = 218 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKK-RSSA 170 L G+V+ S L V A +V+T + + R +A Sbjct: 92 LLSAALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPRGAA 151 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L G G ++ EIA++L +S TV +++G KLD +R AI A Sbjct: 152 IAELTTRELDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYD 211 Query: 231 FGYI 234 G + Sbjct: 212 NGIV 215 >gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 245 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + ++ L + A + T RE S LQL +G ++EI Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEAL-PSKDPVAHSFTPREASVLQLVAEGLMNKEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ K +R + + A+ + Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244 >gi|16766892|ref|NP_462507.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167549170|ref|ZP_02342929.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990827|ref|ZP_02571926.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168465108|ref|ZP_02699000.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197265905|ref|ZP_03165979.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16422168|gb|AAL22466.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|195632478|gb|EDX50962.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244160|gb|EDY26780.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205325818|gb|EDZ13657.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330641|gb|EDZ17405.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248759|emb|CBG26609.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995841|gb|ACY90726.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160145|emb|CBW19665.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914630|dbj|BAJ38604.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226657|gb|EFX51707.1| Putative regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131966|gb|ADX19396.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990457|gb|AEF09440.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 200 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195 >gi|332307927|ref|YP_004435778.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175256|gb|AEE24510.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 916 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L +G ++ EIA++L ++ +TV ++ + KL NR++ I AI G + Sbjct: 857 TKRELEILTLVVEGASNTEIADRLFVTANTVKFHMKNLYSKLAVNNRVKLITTAIHLGLV 916 >gi|327194435|gb|EGE61295.1| two-component nodulation response regulator protein [Rhizobium etli CNPAF512] Length = 208 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTE 176 P+ + K G + F ++ L + +++A A + + L + S +LT Sbjct: 86 IPISVRAMKAGAIEFLTK--PLREQELLDAAYAGIERDCARRQEVALIAELRSRYDSLTP 143 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + L G +++IA ++GLS TV + G K+ A + + + A G Sbjct: 144 REREIMNLVVAGSVNKQIAAQVGLSEVTVKVHRGHVMQKMQARSLVDLVRMADGLGL 200 >gi|307328094|ref|ZP_07607274.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886213|gb|EFN17219.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 238 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETSCL 182 L GY++ + L V + G L + R L++RE L Sbjct: 126 LAAGATGYLLKDTPREELTRAVRSASSGQSVLSPAVTGRVLGQVRKPTQGPLSDRELQVL 185 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L DG T+ + A L +S TV +L KL +R A+++A + Sbjct: 186 RLIADGATNRQAAAALFISQATVKTHLLHVYEKLGVKDRAAAVSEAHKRHL 236 >gi|72162216|ref|YP_289873.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71915948|gb|AAZ55850.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 236 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ LT RE L+L G G T+ EIA +L L TV ++G KL +R+QA+ Sbjct: 153 GPAAEVARLTRREREVLRLLGRGLTNAEIARQLVLGETTVKTHVGRVLAKLGLRDRVQAV 212 Query: 226 AKAIRFGYI 234 G + Sbjct: 213 VYTYEHGLV 221 >gi|56962510|ref|YP_174236.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908748|dbj|BAD63275.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 199 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S LA + G ++ + LTERE L+L Sbjct: 93 RAGVEGYLLKDSPSEDLAAAIRTIMDGRRVYAPELVDMVYHNETP----LTEREEQVLKL 148 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+++IA++L ++ TV Y+ KL+ NRI+AI+ + G++ Sbjct: 149 IAEGRTTQQIADELKITNGTVRNYVSVILDKLEVGNRIEAISYYQKKGWL 198 >gi|318041781|ref|ZP_07973737.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 228 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 39/91 (42%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E + A + + L + + LT RE L L G T EIAE+L +S Sbjct: 136 EAAVMAVMGHHSYRSPSLRSGQLPYLSCPRLTPREYEVLDLLASGLTDREIAEQLVVSEE 195 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T Y L+ NR+QA+ K +R G + Sbjct: 196 TARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226 >gi|300782102|ref|YP_003762393.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791616|gb|ADJ41991.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 208 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 157 ITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ L K R L TERE L+L G G ++ EIAE+L L+ TV Y+ S Sbjct: 129 VSTARVLDKMRHPPTDELATLTERERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVL 188 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL R QA A +R Sbjct: 189 AKLGMQRRTQAAAWIVRR 206 >gi|297157878|gb|ADI07590.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 5/136 (3%) Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVIT 158 + AG + F V+ + T + ++ + + Sbjct: 84 FDLDEYAHAGLRAGASGFLVKDARPEELLAGIRAVATGDAVVAPALTRRLLDRYAHHLPA 143 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT RE L G G+T+ EIA++L ++ TV ++G K+ Sbjct: 144 PDASTADGTDPRLAALTGREREVLTAIGRGWTNGEIAQRLVVAESTVKTHVGRILAKIGG 203 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 204 RDRVQAVIFAYDTRLV 219 >gi|295838096|ref|ZP_06825029.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295826844|gb|EFG65089.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 219 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 36/110 (32%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + + LT RE L Sbjct: 109 NAGATGYLLKAERPEELFAAIHAAARGRTALSPPVAHRVLAHLRAPRPELTPRERDILAQ 168 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A+A A + Sbjct: 169 LSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 218 >gi|260175087|ref|ZP_05761499.1| LuxR family transcriptional regulator [Bacteroides sp. D2] gi|293371808|ref|ZP_06618218.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|315923316|ref|ZP_07919556.1| transcriptional regulator [Bacteroides sp. D2] gi|292633260|gb|EFF51831.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|313697191|gb|EFS34026.1| transcriptional regulator [Bacteroides sp. D2] Length = 257 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI G + Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256 >gi|258626995|ref|ZP_05721793.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM603] gi|258580669|gb|EEW05620.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM603] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + ++ A +LT RE L+ G ++ +IAE L +S TV ++L Sbjct: 131 HVSSQLLHYYRYAFQTHQTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHL 190 Query: 210 GSATVKLDAVNRIQAIAK 227 KL+ NR++AIA Sbjct: 191 YQIFKKLNVKNRVKAIAW 208 >gi|237745463|ref|ZP_04575943.1| two-component system response regulator [Oxalobacter formigenes HOxBLS] gi|229376814|gb|EEO26905.1| two-component system response regulator [Oxalobacter formigenes HOxBLS] Length = 219 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +LT RE +L G ++ IA KL +S TV A+L S KL +R+ Sbjct: 150 VAAGWAERLNSLTRREHEIARLVATGENNKNIARKLDISERTVKAHLTSIFDKLQIRDRL 209 Query: 223 QAIAK 227 Q + Sbjct: 210 QLVVY 214 >gi|159037739|ref|YP_001536992.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916574|gb|ABV98001.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 240 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 9/121 (7%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKR----SSAAR 172 VR G + + L++A + H +++ + A Sbjct: 97 VRAGANGVLAEDASKAELLIAVRAVASGHAMLGPPVARRMLDWLRSSDDPVGVPYPAVAN 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE L L G +++EIA +L +SV TV +L KL +R Q + A + G Sbjct: 157 NLTGREREILLLTARGLSADEIAGRLFISVATVRTHLYRLRCKLQLKDRAQLVTFAYQTG 216 Query: 233 Y 233 Sbjct: 217 L 217 >gi|15640423|ref|NP_230050.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587593|ref|ZP_01677358.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121727264|ref|ZP_01680423.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147675776|ref|YP_001218664.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153818257|ref|ZP_01970924.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153822263|ref|ZP_01974930.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|227080607|ref|YP_002809158.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|229507036|ref|ZP_04396542.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286] gi|229508809|ref|ZP_04398301.1| hypothetical protein VCE_000215 [Vibrio cholerae B33] gi|229519797|ref|ZP_04409240.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9] gi|229530241|ref|ZP_04419629.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)] gi|229606322|ref|YP_002876970.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236] gi|254850628|ref|ZP_05239978.1| transcriptional regulator [Vibrio cholerae MO10] gi|255743782|ref|ZP_05417739.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101] gi|262153605|ref|ZP_06028733.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262167639|ref|ZP_06035343.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27] gi|262191516|ref|ZP_06049700.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT 5369-93] gi|297580534|ref|ZP_06942460.1| transcriptional regulator [Vibrio cholerae RC385] gi|298501071|ref|ZP_07010872.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9654817|gb|AAF93569.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548166|gb|EAX58238.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121630383|gb|EAX62778.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|126511216|gb|EAZ73810.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126520219|gb|EAZ77442.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146317659|gb|ABQ22198.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|227008495|gb|ACP04707.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227012251|gb|ACP08461.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|229332014|gb|EEN97502.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)] gi|229344486|gb|EEO09461.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9] gi|229354212|gb|EEO19143.1| hypothetical protein VCE_000215 [Vibrio cholerae B33] gi|229355781|gb|EEO20701.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286] gi|229368977|gb|ACQ59400.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236] gi|254846333|gb|EET24747.1| transcriptional regulator [Vibrio cholerae MO10] gi|255738531|gb|EET93919.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101] gi|262023975|gb|EEY42672.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27] gi|262030632|gb|EEY49268.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262032614|gb|EEY51168.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT 5369-93] gi|297534950|gb|EFH73785.1| transcriptional regulator [Vibrio cholerae RC385] gi|297540319|gb|EFH76379.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 RL L G + G++ ++ + + H + + Sbjct: 89 RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QVQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 Query: 227 K 227 Sbjct: 208 W 208 >gi|330466893|ref|YP_004404636.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809864|gb|AEB44036.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 238 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +A R+LT RE L L G ++ EIA L L TV +++ KL+ +R+QA+ Sbjct: 166 DPQAALRDLTPREREVLVLVAGGASNAEIATALHLGEATVKSHVSRVLAKLELRDRVQAV 225 Query: 226 AKAIRFGYI 234 A G + Sbjct: 226 VFAYEQGVV 234 >gi|325291416|ref|YP_004267597.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324966817|gb|ADY57596.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 208 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 38/85 (44%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I ++ L KK + ++ RE + L+L G+G ++ EI +L +S TV Sbjct: 122 IVLEREVATALSSMLREGKKTTPEQLAISPREFAILKLVGEGCSNREIGRELKISEGTVR 181 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231 Y+ + KL +R Q I+ Sbjct: 182 NYVTALLEKLGFRDRTQLAIFYIKN 206 >gi|296123119|ref|YP_003630897.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296015459|gb|ADG68698.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 284 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + LT R+ L+ +G + +EIA + LS +V+++ KL + Sbjct: 209 RRFSLPADTPLTGLTGRQLEVLRHLANGASVKEIARLMHLSQKSVDSHKYRIMHKLGIHD 268 Query: 221 RIQAIAKAIRFGY 233 R++ AIR G Sbjct: 269 RVELARFAIREGL 281 >gi|291299247|ref|YP_003510525.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568467|gb|ADD41432.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 188 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ + + + +S+ L+ERE + L G T+ EIAEKL +S T +L + Sbjct: 106 RLLREMMRP-EPKSADTSVLSERELEVVALVAQGLTNAEIAEKLFISAGTAKNHLANVQA 164 Query: 215 KLDAVNRIQAIAKAIRFG 232 KL NR+ A A G Sbjct: 165 KLGVGNRVGIAAWAWETG 182 >gi|167577459|ref|ZP_02370333.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V+ + + + A A + + +S LT RE L+L DG + Sbjct: 115 VMAGRVHIDPSLDEARVASAAGGRAL----------ASPVDELTRREKQVLKLIADGMRN 164 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA L +S TV+ + KL A N I A R+GY Sbjct: 165 REIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206 >gi|284042733|ref|YP_003393073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946954|gb|ADB49698.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 226 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%) Query: 151 GACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +V + F + S AA L+ RE L G ++ EIA L + T Sbjct: 127 LIAPEVTRRLIARFAEVSPAAERATELEELSPREHEVLLQIARGRSNAEIAAALVVEEST 186 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +++ KL +R+QA+ A G + Sbjct: 187 IKSHVSRLLSKLGCSSRVQAVILAYEVGLV 216 >gi|316935769|ref|YP_004110751.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603483|gb|ADU46018.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 203 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 5/111 (4%) Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + S+F+ + +IE Q + + + ++L+ RE + Sbjct: 91 EAMKLGASDFIEKPFDDDRLIGLIELALKQAQEGARSEAVTQDIALRIQSLSPRERQVMD 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++ IA + +S T+ Y + K+ A + + + A+R G I Sbjct: 151 GLVAGMSNKVIAREFDISPRTIEVYRANVMTKMQASSLSELVRMAMRGGVI 201 >gi|197285381|ref|YP_002151253.1| response regulator [Proteus mirabilis HI4320] gi|227355815|ref|ZP_03840208.1| response regulator [Proteus mirabilis ATCC 29906] gi|194682868|emb|CAR43196.1| response regulator [Proteus mirabilis HI4320] gi|227164134|gb|EEI49031.1| response regulator [Proteus mirabilis ATCC 29906] Length = 219 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + L + + +L+ERE + + G +IA++L +S TVN+Y K Sbjct: 129 AMDIALTKVQADLNPLHHLSERELQIMSMIIRGKKIAQIAQELNISTKTVNSYRYRMFSK 188 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L ++ A+R+G I Sbjct: 189 LKISGDVELTHIAVRYGLI 207 >gi|161616659|ref|YP_001590624.1| hypothetical protein SPAB_04476 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168232438|ref|ZP_02657496.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235205|ref|ZP_02660263.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241764|ref|ZP_02666696.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260660|ref|ZP_02682633.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818573|ref|ZP_02830573.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449703|ref|YP_002047634.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468644|ref|ZP_03074628.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737459|ref|YP_002116543.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250551|ref|YP_002148534.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204928537|ref|ZP_03219736.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224585403|ref|YP_002639202.1| hypothetical protein SPC_3680 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910366|ref|ZP_04654203.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161366023|gb|ABX69791.1| hypothetical protein SPAB_04476 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408007|gb|ACF68226.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455008|gb|EDX43847.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712961|gb|ACF92182.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197214254|gb|ACH51651.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291362|gb|EDY30714.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204321970|gb|EDZ07168.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205333300|gb|EDZ20064.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339085|gb|EDZ25849.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344401|gb|EDZ31165.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350320|gb|EDZ36951.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469931|gb|ACN47761.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088025|emb|CBY97787.1| putative HTH-type transcriptional regulator yhjB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614001|gb|EFY10937.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617893|gb|EFY14786.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625492|gb|EFY22318.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629957|gb|EFY26730.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632154|gb|EFY28905.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636496|gb|EFY33203.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643130|gb|EFY39704.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644649|gb|EFY41185.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651327|gb|EFY47711.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652757|gb|EFY49096.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659058|gb|EFY55310.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663240|gb|EFY59444.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668726|gb|EFY64879.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674470|gb|EFY70563.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678323|gb|EFY74384.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682419|gb|EFY78440.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684133|gb|EFY80139.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192311|gb|EFZ77543.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196261|gb|EFZ81413.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201409|gb|EFZ86475.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206481|gb|EFZ91442.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212073|gb|EFZ96900.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216978|gb|EGA01701.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220343|gb|EGA04797.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224391|gb|EGA08680.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228320|gb|EGA12451.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233413|gb|EGA17506.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237126|gb|EGA21193.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243659|gb|EGA27675.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246097|gb|EGA30084.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250877|gb|EGA34755.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257630|gb|EGA41316.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261837|gb|EGA45404.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266106|gb|EGA49597.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268650|gb|EGA52117.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 200 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195 >gi|148245043|ref|YP_001219737.1| two-component system, nitrate/nitrite response regulator [Candidatus Vesicomyosocius okutanii HA] gi|146326870|dbj|BAF62013.1| two-component system, nitrate/nitrite response regulator [Candidatus Vesicomyosocius okutanii HA] Length = 209 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + D L + + +LT RE GY+++ IA +LG+S TV Sbjct: 125 DMRYILAKALRDELTDNE---PSFGSLTSREKEVACQVSSGYSNKVIARELGISDGTVKL 181 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ S KL +R++ + GY Sbjct: 182 HVKSILKKLSLSSRVEVAVMVTQKGY 207 >gi|302559865|ref|ZP_07312207.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302477483|gb|EFL40576.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 228 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 44/142 (30%), Gaps = 11/142 (7%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + + V L Sbjct: 84 FDLDEYAYAGLRAGASGFLVKDAQPEELLSGIRSVASGDAVVAPSLTRRLLDAYARHLPT 143 Query: 164 FKKRS-----------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 S + LTERE L + G G+T+ EIA +L L+ TV ++G Sbjct: 144 PGPDSDSDAPTAGHTDARLDALTEREREILTVVGRGWTNTEIATRLHLAESTVKTHVGRI 203 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 K + +RIQA+ A + Sbjct: 204 LAKTGSRDRIQAVILAYDTKLV 225 >gi|167615608|ref|ZP_02384243.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257142156|ref|ZP_05590418.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 214 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V+ + + + A A + + +S LT RE L+L DG + Sbjct: 115 VMAGRVHIDPSLDEARVASAAGGRAL----------ASPVDELTRREKQVLKLIADGMRN 164 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA L +S TV+ + KL A N I A R+GY Sbjct: 165 REIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206 >gi|144898601|emb|CAM75465.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 217 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ L L G+G +++EIA L L+ TV ++ + L+ NR +A+ A + G Sbjct: 153 LTPRQREVLGLLGEGKSNKEIARILELAEGTVKLHVTAILKALNVNNRTRAVVAAAQMGL 212 >gi|83716526|ref|YP_439048.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83650351|gb|ABC34415.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 223 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V+ + + + A A + + +S LT RE L+L DG + Sbjct: 124 VMAGRVHIDPSLDEARVASAAGGRAL----------ASPVDELTRREKQVLKLIADGMRN 173 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA L +S TV+ + KL A N I A R+GY Sbjct: 174 REIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 215 >gi|54026123|ref|YP_120365.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017631|dbj|BAD59001.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 285 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 3/104 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + HG C ++ L + S A L+ RE L G T Sbjct: 184 AELRGLAGTVRDERTRERLHGVCARL---TRMLTGETSPTAPKLSRRELDVLSEVALGCT 240 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++E+A++L L TV +YL +A KLDA +R +A+ A R G + Sbjct: 241 NQEVAQRLSLGPETVKSYLRNAMTKLDAHSRHEAVVTARRLGLL 284 >gi|324997306|ref|ZP_08118418.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 226 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 19/162 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + ++ R +A V VI + ++ + Sbjct: 65 LDVHLPGGGGAEILRRTRAAGTESVFLALSVSDAAEDVISVIRSGARGYVTKTISGRDLA 124 Query: 148 EAHGA--------CYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSE 192 +A ++ L+ F R AA LT+RE L+L GY + Sbjct: 125 DAVRRVRVGDAVFSPRLAGFVLDAFSDRPGAAPPVDPEVDQLTKRERDVLRLLARGYAYK 184 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L +SV TV ++ S K NR + A + Sbjct: 185 EIAGELFISVKTVETHVSSVLRKTQTSNRHELSRWASDRRLV 226 >gi|226363249|ref|YP_002781031.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226241738|dbj|BAH52086.1| NarL family two-component response regulator [Rhodococcus opacus B4] Length = 276 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 40/99 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V + G +L + A +L+ RE L L Sbjct: 97 AGAAGYLLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTRVRRPATSLSPREIQVLTLV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G ++ EI ++L LS TV ++L KL +R A Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSA 195 >gi|213967183|ref|ZP_03395332.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301381082|ref|ZP_07229500.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060741|ref|ZP_07252282.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302133226|ref|ZP_07259216.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928025|gb|EEB61571.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 910 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE L+L G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 846 SDCLSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 905 Query: 231 FGYI 234 G + Sbjct: 906 LGLL 909 >gi|196234323|ref|ZP_03133152.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196221590|gb|EDY16131.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 8/149 (5%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVII 147 ++ Q + + V I + +++ Sbjct: 59 DVRLPLQDGVQAARTIRNDHPQARIAMLTVSDAEEDILGAIDAGVVGYLPKSVEREQLLT 118 Query: 148 EAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 H + +E + ++ +LT+RET L G +++EI LG++ TV Sbjct: 119 AIHRLAEGGEYFAPEIEAKLRSTNRV-SLTKRETEVLTQIVKGRSNKEIGYDLGIAEPTV 177 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L KL ++R QA A++ G + Sbjct: 178 RLHLTHLFKKLHVMDRTQAAMVAVQRGLV 206 >gi|169630970|ref|YP_001704619.1| LuxR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242937|emb|CAM63965.1| Probable transcriptional regulator, LuxR family [Mycobacterium abscessus] Length = 216 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + ++ + A +++ + + L S LT +E + L+L G+G Sbjct: 108 GMELISAVRTVGAGRSLLD--NRAAAALMNRLRAAADNPSPLAGLTAQERTLLELIGEGL 165 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+ +IAE++ L+ TV Y+ KLD R Q A + Sbjct: 166 TNRQIAERMFLAEKTVKNYVSRLLTKLDLERRTQVAVLATKL 207 >gi|15966696|ref|NP_387049.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15075968|emb|CAC47522.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] Length = 237 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G ++ IA++LGLS +TV ++ + K++ NR +A ++ R Sbjct: 163 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRN 220 >gi|15595232|ref|NP_248724.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107099028|ref|ZP_01362946.1| hypothetical protein PaerPA_01000036 [Pseudomonas aeruginosa PACS2] gi|116053755|ref|YP_788190.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|152985987|ref|YP_001345432.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|218888780|ref|YP_002437644.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254237723|ref|ZP_04931046.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719] gi|254243146|ref|ZP_04936468.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192] gi|296386510|ref|ZP_06876009.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|13959718|sp|P24908|TRPO_PSEAE RecName: Full=Putative transcriptional regulator gi|9945855|gb|AAG03424.1|AE004443_2 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115588976|gb|ABJ14991.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169654|gb|EAZ55165.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719] gi|126196524|gb|EAZ60587.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192] gi|150961145|gb|ABR83170.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] gi|218769003|emb|CAW24761.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 207 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTER 177 + G + F S+ L+ ++ + L + +L++R Sbjct: 91 RCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDR 150 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + LQ +G T++ IA++L LS TV+ Y +KL+A + I A R I Sbjct: 151 EMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI 207 >gi|282898699|ref|ZP_06306687.1| Transcriptional Regulator with GAF sensor, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281196567|gb|EFA71476.1| Transcriptional Regulator with GAF sensor, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 216 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 34/232 (14%) Query: 11 SSSLQELSPRL------HLIQNRIK---ARNFALYTINSALDFPRRQQLICELHNYDLDS 61 + +L + + +Q + + +F ++ + + E+ Sbjct: 2 AKTLHSIFEAIAHVETEQELQQALMETISLHFGVHHWGISF-REHQFLTGMEIPEIPAVC 60 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + + + ++ + + P Sbjct: 61 LEANPVGSY-----VVERHAPTHELLVLAPEDWKNFCTRHEHVM-------------TGP 102 Query: 122 VRLGFHKNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKRSSAAR----NLT 175 + G + F + + + C + L K + LT Sbjct: 103 IVCDGRLVGTLNFARDPGSPPFNNNDLADLSALCIHLSAKIATLQAKWNMVKPITECPLT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE +L G T+ EIA +L +S +TV L KL R + +AK Sbjct: 163 ARELEIAKLVAQGLTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVAK 214 >gi|239943663|ref|ZP_04695600.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 183 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY+ + L V +++ L + ++ LT RE L+ G Sbjct: 79 RGYLHKDASRAELRATVTQALADPTWRLAPRRLRSAEMGAAPT--LTAREIQVLEGMSHG 136 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EI +L LS TV + KL A +R A+A R+G + Sbjct: 137 RSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 182 >gi|158315847|ref|YP_001508355.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111252|gb|ABW13449.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 216 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 32/69 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L A L +RE LQL DG T+ +I +LGLS TV Y+ S KL Sbjct: 141 ERLRDGPSEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGL 200 Query: 219 VNRIQAIAK 227 +R QA Sbjct: 201 ASRTQAAVY 209 >gi|83312959|ref|YP_423223.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947800|dbj|BAE52664.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 40/82 (48%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 V+ E SA L+ RE L+L +GYT++++A LG+SV TV+ + + Sbjct: 143 AGLVVDGGEEGGLAAGSAVAPLSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENI 202 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL + A A+R G + Sbjct: 203 MNKLGVRTPVALAAIALREGLV 224 >gi|331018080|gb|EGH98136.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 910 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE L+L G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 846 SDCLSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 905 Query: 231 FGYI 234 G + Sbjct: 906 LGLL 909 >gi|300705575|ref|YP_003747178.1| response regulator, luxr family [Ralstonia solanacearum CFBP2957] gi|299073239|emb|CBJ44598.1| putative response regulator, LuxR family [Ralstonia solanacearum CFBP2957] Length = 210 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182 GYV+ + L + G + + + ++ + LT RE L Sbjct: 98 RAGARGYVLKDAPASELVEAIDAVLAGRPFYSTQLAMRMAEQAVAPTPVEALTPREHDIL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G++++ IA++LGLSV TV ++ + KL + + + A+ G Sbjct: 158 DGIAQGWSNKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVEAG 207 >gi|295838240|ref|ZP_06825173.1| two component transcriptional regulatory protein devr [Streptomyces sp. SPB74] gi|295826930|gb|EDY45148.2| two component transcriptional regulatory protein devr [Streptomyces sp. SPB74] Length = 155 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERET 179 R + T G +V+ F + LT+RE Sbjct: 39 RPPTPRALPSPATHGRRRAPGNSRRRRTGPAGRVMAHFARTGNTLQSSPEGLDRLTDRER 98 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L G+G +++EIA +L ++ TV +++ KL +R+QA G Sbjct: 99 DVLDCLGEGLSNQEIAHRLYITEATVKSHVSHILAKLGVRSRVQAAILVQDHG 151 >gi|282865307|ref|ZP_06274359.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559780|gb|EFB65330.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 381 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE + L G T+++IA +S TV ++ KL+A +R +AIA R Sbjct: 313 DELSEREREVMGLIASGMTNQQIAATCFISQKTVKNHINRIFAKLNAGSRGEAIALWHRL 372 >gi|332142663|ref|YP_004428401.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552685|gb|AEA99403.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 225 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE + + DG ++EIA+ L +SV+TV ++ S K D NR++ I Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNRVELIKW 212 >gi|238787448|ref|ZP_04631246.1| hypothetical protein yfred0001_19670 [Yersinia frederiksenii ATCC 33641] gi|238724235|gb|EEQ15877.1| hypothetical protein yfred0001_19670 [Yersinia frederiksenii ATCC 33641] Length = 209 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + IA++L +S TV + + KLD + I + R G Sbjct: 149 LTPRERQVLKLITEGSCNRIIADQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208 >gi|152966492|ref|YP_001362276.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151361009|gb|ABS04012.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 242 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + LT RE + G + +I E+L +S TV ++ A KL +R Q + Sbjct: 170 RLRARVELLTARERDVVVAVARGLDNTQIGEELFISPLTVKTHVSRAMTKLRVRDRAQLV 229 Query: 226 AKAIRFGY 233 A A R G Sbjct: 230 AIAYRAGI 237 >gi|330961775|gb|EGH62035.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 910 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEA------HGACYQVITDFLELFKKRSSAAR 172 PV G + + E +E +++A ++ + + Sbjct: 788 CLPVAAGGALLPFRVLLGEHARWLHEQLLQAPPGTVRDALLEKLPPCTAPALPEPAHGND 847 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 848 CLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILG 907 Query: 233 YI 234 + Sbjct: 908 LL 909 >gi|298241311|ref|ZP_06965118.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554365|gb|EFH88229.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 214 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 17/133 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAH------------GACYQVITDFL 161 + + + + ++ A ++I F Sbjct: 81 LVVTMFEDDDSVFAAMRAGARGYLLKDADQDELLRAVKAVSRGEAIFSPAIAQRMIHYFS 140 Query: 162 ELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + S+ A +LTERE L L G ++ IA+ LS+ TV ++ + KL + Sbjct: 141 ALPQTASAIAFPDLTEREREILLLIAQGESNAAIAKHFTLSLKTVQNHVSNIFSKLQVAD 200 Query: 221 RIQAIAKAIRFGY 233 R QAI +A G Sbjct: 201 RAQAIVRARDAGL 213 >gi|298244378|ref|ZP_06968184.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551859|gb|EFH85724.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 212 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 153 CYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V+ L + + + +L+ ++ L+ G +S EIA+KL LS +T+ Y+ Sbjct: 129 AAAVLMTQLRRAPQTNPELSLESLSSQQLVILRFVAQGLSSREIAKKLYLSENTIKGYVQ 188 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +L+ NR +A+ A++ G++ Sbjct: 189 EILHRLNVKNRTEAVMVAVKHGWL 212 >gi|296101648|ref|YP_003611794.1| two-component system, NarL family, response regulator, fimbrial Z [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056107|gb|ADF60845.1| two-component system, NarL family, response regulator, fimbrial Z [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 210 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I Sbjct: 144 MASDMPLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKSNIYSKLGVQSIVELIDY 203 Query: 228 AIRFGYI 234 A + Sbjct: 204 AKAHELL 210 >gi|288958809|ref|YP_003449150.1| two-component response regulator [Azospirillum sp. B510] gi|288911117|dbj|BAI72606.1| two-component response regulator [Azospirillum sp. B510] Length = 226 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H A V ++ + + + L++RE L+ G +++ IA L ++ TV +L Sbjct: 130 HLAELLVSGRTEDVSAELPTRRKGLSQREVQILRCLLSGNSNKMIANHLNITEATVKVHL 189 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 S K++A NR QA A+ G Sbjct: 190 KSLLRKINASNRTQAAIWALNNGI 213 >gi|254822986|ref|ZP_05227987.1| hypothetical protein MintA_23864 [Mycobacterium intracellulare ATCC 13950] Length = 518 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 37/83 (44%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A V+ + ++ + LT RE L L G +++EIA L +S T ++ Sbjct: 431 AVEAVLHAAGQPAQRPNLRPDRLTPREVEVLCLVARGASNKEIAASLVISEKTARNHVER 490 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 K+ NRI A A+R G + Sbjct: 491 TYAKIGVSNRIGASMYALRHGLV 513 >gi|238060490|ref|ZP_04605199.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237882301|gb|EEP71129.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 226 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 39/82 (47%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + E + LT RE + L G +++EIAE++ LS TV A++ Sbjct: 136 LVARFLATPDEPAHQHPEQLGVLTAREREMVALVATGLSNQEIAERMFLSPFTVRAHVQR 195 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 A KL+A +R Q + A + G Sbjct: 196 AMTKLEARDRAQLVVIAYQTGL 217 >gi|209517666|ref|ZP_03266503.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209501841|gb|EEA01860.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 210 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 46/156 (29%), Gaps = 13/156 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + S L R+ + + + L + E Sbjct: 53 LDMTMPGISGVALIRRVRAEYPSLPVLVLSIHDEAQVASRALRAGATGYLTKDSDPEVLL 112 Query: 152 ACYQVITDFLEL-------------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A + I D + L++RE LQ+ G + EIA+ Sbjct: 113 AAIRKIADGGRFIDPKLVDALVFDAPRGDVPPHEVLSDREFQVLQMLAAGRSINEIAQAC 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS T++ + KL N + I AIR G I Sbjct: 173 SLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGMI 208 >gi|28868366|ref|NP_790985.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851603|gb|AAO54680.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 910 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE L+L G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 846 SDCLSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 905 Query: 231 FGYI 234 G + Sbjct: 906 LGLL 909 >gi|95928587|ref|ZP_01311334.1| two component transcriptional regulator, LuxR family [Desulfuromonas acetoxidans DSM 684] gi|95135377|gb|EAT17029.1| two component transcriptional regulator, LuxR family [Desulfuromonas acetoxidans DSM 684] Length = 263 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 38/88 (43%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 E + A Q D E + S + LT+RE +L +G + EI+E L +S TV Sbjct: 160 AELNPAIIQFYLDHRENASDQLSEYQLLTDREKQVFRLLANGKQTHEISEILCISPKTVA 219 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL + AI+ G I Sbjct: 220 KHRAAVKKKLSLNTTAEMAKYAIQIGVI 247 >gi|323496086|ref|ZP_08101146.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323318830|gb|EGA71781.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 214 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 152 ACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q++ + + + + + A +LT RE L+ G ++ +IAE+ +S TV ++L Sbjct: 131 VAAQLLYHYRNIVEVQSTPATVDLTTREIHILRSLMTGASNSQIAEEQFISEFTVKSHLY 190 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 KL NR+QA A A + Sbjct: 191 QIFKKLCVKNRVQASAWARQN 211 >gi|303242530|ref|ZP_07329009.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302589948|gb|EFL59717.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 214 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+A L ERE +QL DG ++ +IAE+L L+ +V + S KLD +R+Q Sbjct: 147 ESTALAKLNEREIKVIQLVVDGKSNNQIAEELFLTEGSVRNIVSSLLRKLDLKDRVQLAV 206 Query: 227 KAIRFGYI 234 A+R + Sbjct: 207 FAVRNKLV 214 >gi|258652221|ref|YP_003201377.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555446|gb|ACV78388.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 219 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + ++ + + +++ + + + LTE+E L L G G Sbjct: 108 GMELVSAVRTVGSGRSLLDT--RAAAALMSKIRAEAQDPGPLAGLTEQERVVLDLIGQGM 165 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+ +I E++ L+ TV Y+ S KL R Q A Sbjct: 166 TNRQIGERMFLAEKTVKNYVSSVLAKLGMQRRTQVAVLATEL 207 >gi|196232652|ref|ZP_03131504.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223414|gb|EDY17932.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 220 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 5/135 (3%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + VR I N A+ + A Sbjct: 89 HETEQFVREALAAGVRGYILKTDAGRDLANAVDALIRGETFFASRL-----AATIYAAEF 143 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 ++RS + LT RE LQL +G + ++ + L +SV T + KL Sbjct: 144 AGMGRRRRSKSQAGLTPREREILQLLAEGRKNRDVGKALNISVKTAETHRARIMAKLGID 203 Query: 220 NRIQAIAKAIRFGYI 234 + + AIR G I Sbjct: 204 SVADLVRYAIRNGLI 218 >gi|169349619|ref|ZP_02866557.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552] gi|169293694|gb|EDS75827.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552] Length = 227 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +++ E +Q G G++++EIA+KL LS TV YL S KL+ +R Q A++ Sbjct: 158 DEISKPEWKVIQQVGYGFSNKEIAQKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQT 217 Query: 232 G 232 G Sbjct: 218 G 218 >gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 227 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L G+++ ++ +L LS TV Y+ S K NR + + A++ G Sbjct: 165 SLTPREQEVLELLTHGFSNADMGHQLHLSPRTVEKYVSSLLRKTATSNRAELVRFAMKHG 224 Query: 233 YI 234 + Sbjct: 225 LV 226 >gi|94499701|ref|ZP_01306238.1| two-component system regulatory protein [Oceanobacter sp. RED65] gi|94428455|gb|EAT13428.1| two-component system regulatory protein [Oceanobacter sp. RED65] Length = 211 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ ET L+L GY++ EIA + + TV + S KLD +R QA+ +AI G Sbjct: 150 ELSTSETQVLRLVAAGYSNNEIASTVFKAQGTVRNQISSILEKLDVRDRTQAVMRAIELG 209 Query: 233 YI 234 I Sbjct: 210 LI 211 >gi|326773342|ref|ZP_08232625.1| two-component system response regulator [Actinomyces viscosus C505] gi|326636572|gb|EGE37475.1| two-component system response regulator [Actinomyces viscosus C505] Length = 255 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT RE + L L G ++ I E+L ++ TV +++ + K NR++ + Sbjct: 185 PSGPYEALTGREDAVLALVCQGLSNASIGERLHVAESTVKSHVKTILGKTGCHNRVELVI 244 Query: 227 KAIRFGYI 234 A+ G + Sbjct: 245 YALTTGLV 252 >gi|269962474|ref|ZP_06176823.1| Transcriptional regulator [Vibrio harveyi 1DA3] gi|269832770|gb|EEZ86880.1| Transcriptional regulator [Vibrio harveyi 1DA3] Length = 211 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|261209952|ref|ZP_05924252.1| transcriptional regulator LuxR family [Vibrio sp. RC341] gi|260841017|gb|EEX67549.1| transcriptional regulator LuxR family [Vibrio sp. RC341] Length = 214 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + ++ +LT RE L+ G ++ +IAE L +S TV ++L Sbjct: 131 HVSNQLLHYYRYAFQTHQTQVTIDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHL 190 Query: 210 GSATVKLDAVNRIQAIAK 227 KL+ NR++AIA Sbjct: 191 YQIFKKLNVKNRVKAIAW 208 >gi|237808386|ref|YP_002892826.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237500647|gb|ACQ93240.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 298 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 40/84 (47%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + A +++T ++ NLT+RE+ L G T+ EIA L +S TVN Sbjct: 213 DQLHALIRLVTPKKRGTEEDLQRELNLTKRESQVLYWLSFGKTNWEIATILEMSPRTVNK 272 Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231 +L KL+ NR A + ++R Sbjct: 273 HLEQIYKKLNVDNRTAAASISLRL 296 >gi|153834921|ref|ZP_01987588.1| response regulator [Vibrio harveyi HY01] gi|156972525|ref|YP_001443432.1| transcriptional regulator LuxR [Vibrio harveyi ATCC BAA-1116] gi|148868647|gb|EDL67731.1| response regulator [Vibrio harveyi HY01] gi|156524119|gb|ABU69205.1| hypothetical protein VIBHAR_00157 [Vibrio harveyi ATCC BAA-1116] Length = 211 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|333026198|ref|ZP_08454262.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746050|gb|EGJ76491.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 205 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 36/110 (32%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + + LT RE L Sbjct: 95 NAGATGYLLKAERPEELFAAIHAAAQGRTALSPPVAHRVLAHLRAPRPELTPRERDILAQ 154 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A+A A + Sbjct: 155 LSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 204 >gi|317128012|ref|YP_004094294.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315472960|gb|ADU29563.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 203 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 25/56 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE +L G ++ EIAE+L + TV L KLD +R Q Sbjct: 142 DQLTPREKDIAELVAQGLSNREIAEQLYIGEGTVRNNLSIILEKLDLRDRTQLAIY 197 >gi|223041628|ref|ZP_03611826.1| transcriptional regulatory protein UhpA [Actinobacillus minor 202] gi|223017557|gb|EEF15970.1| transcriptional regulatory protein UhpA [Actinobacillus minor 202] Length = 201 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +S LT+RE +L G+ ++EIA+KL LS TV+ + +A KL+ N + Sbjct: 131 VSSRHNSPIEQLTKREREICELLIQGFDAKEIADKLNLSFKTVHVHRANAMSKLNVKNNV 190 Query: 223 QAI 225 + Sbjct: 191 ELA 193 >gi|184201310|ref|YP_001855517.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183581540|dbj|BAG30011.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 270 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +++ LT RET L G ++EEIA +L + TV ++ + K A +R+ Sbjct: 198 ENGAAASPAGLTARETEVLTAMARGLSNEEIARELVVGRATVKTHVSNVLQKTGARDRVH 257 Query: 224 AIAKAIRFGY 233 A+ A G Sbjct: 258 AVIWAFEHGL 267 >gi|241204229|ref|YP_002975325.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858119|gb|ACS55786.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 207 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE + L G +++ I +L L TV ++ KL A NR +A + Sbjct: 148 SLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQILSKLGASNRTEAALQWRER 206 >gi|331669588|ref|ZP_08370434.1| putative 2-component transcriptional regulator [Escherichia coli TA271] gi|331063256|gb|EGI35169.1| putative 2-component transcriptional regulator [Escherichia coli TA271] Length = 148 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS V + + KLD + I+ I Sbjct: 79 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKKVETHRLNIMKKLDVHSGIELIK 138 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 139 TALRMG-VC 146 >gi|291008395|ref|ZP_06566368.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 340 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 10/126 (7%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 L + + V + ++ F + + + + ++ Sbjct: 214 LRSEGPLWPLLLTSVPHRDGRYIWIDEAGTFHRID----------LTRCAGATVLVAERE 263 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE + L G ++ EIA+ L +S TV+ ++ KL +R + A Sbjct: 264 TPAPYDLTVRELQIVTLLAVGASNPEIADALVVSRRTVSTHVEHILAKLAVASRAEVAAL 323 Query: 228 AIRFGY 233 A R G Sbjct: 324 AAREGL 329 >gi|238763427|ref|ZP_04624390.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] gi|238763508|ref|ZP_04624470.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] gi|238698290|gb|EEP91045.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] gi|238698371|gb|EEP91125.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] Length = 209 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + ES L RL + F I + G + ++ Sbjct: 48 VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107 Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E++ L ++ LT RE QL +G + + I Sbjct: 108 PD-ELVQALRTVNGGGLYLCADALRALRHMPQQPQQLAVLTPREKEIFQLLINGISVKSI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L LS TV+ + + KL+ ++ + A++ + Sbjct: 167 ADQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206 >gi|238059474|ref|ZP_04604183.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881285|gb|EEP70113.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 204 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LT RE L+ A +G +EIA +L L+ TV +L + K A NR++A+ Sbjct: 138 SPPANPLTRREREVLREAAEGVPLKEIARRLFLAHGTVRNHLSAIMHKTGARNRMEAVRL 197 Query: 228 AIRFGYI 234 A G++ Sbjct: 198 AQHEGWL 204 >gi|300361177|ref|ZP_07057354.1| two component system response regulator [Lactobacillus gasseri JV-V03] gi|300353796|gb|EFJ69667.1| two component system response regulator [Lactobacillus gasseri JV-V03] Length = 227 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ E +Q G G +++EIA KL LS TV Y+ KLD +R Q A++ G Sbjct: 161 SKSEWCVIQQVGLGLSNKEIAAKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQTG 218 >gi|284042697|ref|YP_003393037.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946918|gb|ADB49662.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177 +GYV+ T+ L A ++ D+L LT R Sbjct: 102 AGASGYVLKTAADRDLVEAARAAMRGESFLYPAAITALVRDYLERASAGEDVPEDPLTPR 161 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L + +T+++IA +L ++ TV + + KL +R++ AIR G + Sbjct: 162 EREVLKLIAEAHTNDQIALELQIARRTVERHRANILAKLHMRDRVELTRYAIRRGLV 218 >gi|271966129|ref|YP_003340325.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509304|gb|ACZ87582.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + L V A G ++ + L+ F ++ A+ + Sbjct: 94 VSRALAAGVAGYLLKDAPREELQAAVRTAAAGGRILAQRITSQLLDGFGRKRRASP--SP 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++E+A L +S TV +L KL NR A+ A+ I Sbjct: 152 RELEVLRLIARGAANKEVARALLISETTVKTHLKHVFAKLGVDNRAAAVVVAMEQRLI 209 >gi|284033583|ref|YP_003383514.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283812876|gb|ADB34715.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 225 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 30/84 (35%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + L ++ +LT RE L G ++ EIA LS TV ++G Sbjct: 138 RRLLEHFAGSLPDGEREVPDLADLTAREREVLVEVARGLSNTEIARLFTLSEATVKTHIG 197 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 K +R+ + G + Sbjct: 198 RILAKTGLRDRVALVVLGYETGLV 221 >gi|261341125|ref|ZP_05968983.1| positive transcription regulator EvgA [Enterobacter cancerogenus ATCC 35316] gi|288316417|gb|EFC55355.1| positive transcription regulator EvgA [Enterobacter cancerogenus ATCC 35316] Length = 210 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I Sbjct: 144 AAVDMPLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKSNIYSKLGVQSIVELIDY 203 Query: 228 AIRFGYI 234 A + Sbjct: 204 AKAHELL 210 >gi|297197789|ref|ZP_06915186.1| two component system response regulator [Streptomyces sviceus ATCC 29083] gi|197716622|gb|EDY60656.1| two component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + A LTERE + L G G ++EEIA +L +S T ++ VKL A Sbjct: 140 AARSKEPEAEGALAGLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGA 199 Query: 219 VNRIQAIAKAIRFGYI 234 +R Q + A G + Sbjct: 200 RDRAQLVVLAYESGLV 215 >gi|149914298|ref|ZP_01902829.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149811817|gb|EDM71650.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 223 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT RE LQLA DG T++EIA++LG++ V + + KL A NR A Sbjct: 154 EPARPRNEALTHREKRILQLASDGGTNKEIAQELGITESQVKMVMRTLCAKLQAKNRTHA 213 Query: 225 IAKAIRFGYI 234 + +A R I Sbjct: 214 VVRANRLDLI 223 >gi|25027179|ref|NP_737233.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259506684|ref|ZP_05749586.1| two component system response regulator [Corynebacterium efficiens YS-314] gi|23492460|dbj|BAC17433.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259165729|gb|EEW50283.1| two component system response regulator [Corynebacterium efficiens YS-314] Length = 230 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 48/179 (26%), Gaps = 37/179 (20%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + R+ + +A V +I ++ E ++ Sbjct: 51 LDVHMPDGGGLAVIRRVLEAGVETIFLALSVSDAAEDVIAIIRAGARGYVTKSISGEELV 110 Query: 148 EAH------------GACYQVITDFLELFKKR---------------------SSAARNL 174 EA V+ F + L Sbjct: 111 EAINRVNSGDAFFSPRLAGFVLDAFAAPDSRAGAGIVDAPEKDAAVEKGAVIDDPIVDAL 170 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L GYT +EI ++L +SV TV + + K NR A Sbjct: 171 TRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQSNRHALTRWAHSRDL 229 >gi|212640042|ref|YP_002316562.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561522|gb|ACJ34577.1| DNA-binding response regulator, NarL family, with truncated N-terminal REC domain [Anoxybacillus flavithermus WK1] Length = 165 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L + E LQ+ + +T+ +I+EKL +S TV +L S KL A +R AIA A Sbjct: 99 PPLCKLNDTEIRILQMVSNDFTNRQISEKLNISKRTVERHLSSCFEKLGAHSRAGAIAAA 158 Query: 229 IRFGYI 234 +R I Sbjct: 159 MRLKLI 164 >gi|297203494|ref|ZP_06920891.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714467|gb|EDY58501.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 236 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 39/96 (40%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + +I E L+ +T+RE L L G ++ EI+ +L Sbjct: 134 PAVTRRLIAEFCRRPEARPEGRLDGLASAPRGLDGVTDREREVLLLIAGGLSNTEISNRL 193 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV ++G KL+A +R Q + A G + Sbjct: 194 HLSHGTVKTHVGRLLAKLEARDRAQLVIAAYESGLV 229 >gi|150249482|gb|ABR67760.1| CmnR [Saccharothrix mutabilis subsp. capreolus] Length = 237 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L + A +LTERE L+ G G ++ EIA + +S TV +++ KL+ Sbjct: 146 QIIPLPDPSAPALLSLTEREGQVLRAIGQGRSNREIAREFEVSETTVKSHVSRVLAKLEL 205 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA A R G + Sbjct: 206 RDRVQAALLAWRLGLV 221 >gi|15893532|ref|NP_346881.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023075|gb|AAK78221.1|AE007537_6 Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325507651|gb|ADZ19287.1| Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 208 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 32/55 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NLTERE L+ GDG +++EIA KL LS TV Y+ S KL+ +R Q Sbjct: 149 NLTEREMEVLRNIGDGLSNKEIASKLYLSEGTVRNYITSLLEKLELRDRTQLAIF 203 >gi|113969064|ref|YP_732857.1| LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113883748|gb|ABI37800.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 221 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 12/159 (7%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL--GFHKNGYVIFT 135 ++ +P++ + + L L + + +R + ++ T Sbjct: 56 AALDNKGIPLLASRLVPHVPV----ALYQVERNSLDQESAMLLGIRGLLFADQRMDLMLT 111 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGY 189 M+A+E+ + +L + A LT RE + +Q G Sbjct: 112 GLRKMVADELWYDRTLLSKMFRRVVQKLDGQNDMPADTVAMLQALTSRERTIIQFVSSGA 171 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 172 RNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|329944904|ref|ZP_08292931.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529715|gb|EGF56611.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 240 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R A +LT RE L G ++E IA L ++ TV ++ KL +R QA Sbjct: 150 DDRFRALADLTAREREVLARVARGLSNEAIAHDLCVAEGTVRVHVSRILGKLGLRDRAQA 209 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 210 VVLAYESGLV 219 >gi|229012429|ref|ZP_04169604.1| Two-component protein Kinase [Bacillus mycoides DSM 2048] gi|228748788|gb|EEL98638.1| Two-component protein Kinase [Bacillus mycoides DSM 2048] Length = 592 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 505 QGMSHKIFEKFDEQIETPQSKATAYELTTREIEILQLVAKGLRYTTIASRLYLSSGTVRN 564 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y SA KL N+ +A+ KA+ G I Sbjct: 565 YASSAYTKLGVRNKEEAVQKALEIGVI 591 >gi|223934800|ref|ZP_03626720.1| transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896755|gb|EEF63196.1| transcriptional regulator, LuxR family [bacterium Ellin514] Length = 122 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 35/63 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +S A L+ RE L L GY +EIAE L +SV TVN Y+ KL +R QA Sbjct: 45 RPHASEADELSNREQEVLDLLARGYLYKEIAENLNISVATVNTYIRRVYEKLHVRSRAQA 104 Query: 225 IAK 227 +AK Sbjct: 105 VAK 107 >gi|223934694|ref|ZP_03626614.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896649|gb|EEF63090.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 229 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTERETSCLQLAGDGYTSEE 193 + V+ ++ LELF SS NLT+RE +L G+G +++E Sbjct: 123 MQAIRHVLSGQIFVSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEGLSTKE 182 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 IA + +S TV + + KL + I +R Sbjct: 183 IAANMHVSAKTVEVHRMNIKTKLGLKTAAELIRYTVR 219 >gi|152994993|ref|YP_001339828.1| response regulator receiver protein [Marinomonas sp. MWYL1] gi|150835917|gb|ABR69893.1| response regulator receiver protein [Marinomonas sp. MWYL1] Length = 304 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 7/78 (8%) Query: 160 FLELFKKRSSAARNL-------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L L L T+RE+ L +G T+ EIAE L +S TVN +L Sbjct: 221 LLRLEDGDKPTGPALLKKELDLTDRESEVLHWIANGKTNREIAEILEMSPRTVNKHLEQI 280 Query: 213 TVKLDAVNRIQAIAKAIR 230 KL NR A A+R Sbjct: 281 FPKLGVENRTSAAGVALR 298 >gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regulator protein [Herminiimonas arsenicoxydans] gi|133738764|emb|CAL61811.1| nitrate/nitrite response regulator protein [Herminiimonas arsenicoxydans] Length = 235 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G +++ IA L ++ TV ++ + KL+ +R+QA A+ Sbjct: 167 DKLTPRERDILACLARGESNKLIARTLDVADSTVKIHVQNILKKLNLSSRVQAAIFAVGH 226 Query: 232 G 232 G Sbjct: 227 G 227 >gi|296132098|ref|YP_003639345.1| transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296030676|gb|ADG81444.1| transcriptional regulator, LuxR family [Thermincola potens JR] Length = 285 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 43/131 (32%), Gaps = 12/131 (9%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAA-- 171 + IA P+R + S I + I L K Sbjct: 154 SCIAAPLRGPGGDIIGYLDVSMDSEEELGHTIALVELAVKYIEKLFAEQLSDKTMPKTIT 213 Query: 172 --------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE L G T+ EIA +G+SV TV Y KL N+I Sbjct: 214 SPESLSRFVTLSNRERQIFSLIAKGQTAGEIAGTIGISVTTVKTYRKRIYKKLGIKNKID 273 Query: 224 AIAKAIRFGYI 234 + KA GY+ Sbjct: 274 CLNKARELGYL 284 >gi|271963099|ref|YP_003337295.1| ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270506274|gb|ACZ84552.1| ATPase-like protein [Streptosporangium roseum DSM 43021] Length = 916 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 7/152 (4%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 + + + R R + ++ + E + E Sbjct: 765 AEAEWHRAHGRADVEAWRAVVEAFDVGFAYEAARSRWRLAEALLASGERVAALKEWERAV 824 Query: 150 HGACY-------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 A + + + + LT RE L L +G + EI E+L ++ Sbjct: 825 EVAASLGARPLSAALAELGRRARFAPAQPGLLTGREREVLALVAEGLPNREIGERLFIAQ 884 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV+ ++ + KL +R QA A A + + Sbjct: 885 KTVSVHVSNILGKLGVSSRTQAAAVARKDDLL 916 >gi|269954998|ref|YP_003324787.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269303679|gb|ACZ29229.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 219 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A +++ H A +V+ + +LT +E L L G G T+ +I + Sbjct: 120 RTVAAGGSMLDPH-AAERVMARMRAQARHDDDPLASLTPQEQRILSLIGQGMTNRQIGAE 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L+ TV Y+ + KL R+Q A + G Sbjct: 179 LFLAEKTVKNYVSNLLAKLGMERRVQVAVLATKLG 213 >gi|226314223|ref|YP_002774119.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226097173|dbj|BAH45615.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 858 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K+++ LT +E L + +G +++ IA++LG ++ TV YL KL NR Sbjct: 781 MEKRKAPLIEPLTGKEMIILSMLAEGASNKMIADELGNTLGTVKVYLHRIYGKLGVTNRT 840 Query: 223 QAIAKAIRFGYI 234 QA+ KA + Sbjct: 841 QALLKAQEISLL 852 >gi|218692578|ref|YP_002400790.1| putative response regulator [Escherichia coli ED1a] gi|218430142|emb|CAR11000.1| putative response regulator similar to uhpA; hexosephosphate transport [Escherichia coli ED1a] Length = 209 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147 I E+ L RL F I + + L E ++ Sbjct: 53 IDIAMPDENGLSLVKRLRAQKPQFRAIILSIYDTPTFVQSALDAGASGYLTKRCGPEELV 112 Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A H C I L + + A LT RE L G + +EIA KL Sbjct: 113 QAVRSVGMGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV+ + + KL+ + I+ + A+ + Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALNHHLL 206 >gi|26990830|ref|NP_746255.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|148546967|ref|YP_001267069.1| LuxR family transcriptional regulator [Pseudomonas putida F1] gi|24985838|gb|AAN69719.1|AE016608_5 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] gi|148511025|gb|ABQ77885.1| regulatory protein, LuxR [Pseudomonas putida F1] gi|313498014|gb|ADR59380.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 82 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + + A LT RE L G +S EI + L TVN ++ + K + Sbjct: 3 DNARHSQQPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILECKESTVNFHVSNILRKFE 62 Query: 218 AVNRIQAIAKAIRFGYI 234 R+ A+ KAIR+G + Sbjct: 63 VPTRVAAVIKAIRYGML 79 >gi|311896508|dbj|BAJ28916.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 203 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 3/100 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEI 194 + + T L + RS AA LT RE L+ G ++ EI Sbjct: 103 HKDASRAELRATVTQALADPTWRLAPRRLRSPDMGAAPTLTAREIQVLEGMSHGRSNAEI 162 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV + KL A +R A+A R+G + Sbjct: 163 GRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202 >gi|227505299|ref|ZP_03935348.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198097|gb|EEI78145.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 217 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 29/72 (40%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + A LT RE L+L GYT EI E+L +SV TV + + K NR Sbjct: 145 APDESVDPAVDALTRRELEVLRLLARGYTYREIGERLFISVKTVETHASNILRKTQQSNR 204 Query: 222 IQAIAKAIRFGY 233 Q A Sbjct: 205 HQLTRWAASHDL 216 >gi|167765400|ref|ZP_02437513.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC 43183] gi|167697028|gb|EDS13607.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC 43183] Length = 256 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + S+ L + ++ + + K LT RE LQL G Sbjct: 156 GVMDIASDQRPLDGVKCTVLNLKTGELFSPYTSAEIKP-----ELTNREIEILQLIKQGL 210 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+EIA LG+S+HTVN + + KL N I+AI + G I Sbjct: 211 LSKEIAYTLGVSIHTVNIHRQNLLRKLGVQNSIEAINIGSKTGLI 255 >gi|163943040|ref|YP_001647924.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865237|gb|ABY46296.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 200 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NR Sbjct: 128 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 187 Query: 222 IQAIAKAIRFGY 233 I+AI A G+ Sbjct: 188 IEAITIAEEKGW 199 >gi|300791071|ref|YP_003771362.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800585|gb|ADJ50960.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE ++ A G T+ EI +L +S+ TV +L S K+ A NR++ A A Sbjct: 151 PPSEPLTARELDVVKAAARGLTNTEIGAELFMSLSTVKTHLASVQSKIGARNRVETAAWA 210 Query: 229 IRFGYI 234 R G + Sbjct: 211 WRSGVV 216 >gi|83312988|ref|YP_423252.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947829|dbj|BAE52693.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 290 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 34/65 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA +LT R+ L L G G +++EIA L L+ TV ++ + L+ NR +A+ A Sbjct: 219 SAIASLTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAA 278 Query: 229 IRFGY 233 G Sbjct: 279 SHLGL 283 >gi|28899640|ref|NP_799245.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153840435|ref|ZP_01993102.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|260361511|ref|ZP_05774558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|260879130|ref|ZP_05891485.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|260895483|ref|ZP_05903979.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|260903309|ref|ZP_05911704.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|28807892|dbj|BAC61129.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149745902|gb|EDM57032.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|308088067|gb|EFO37762.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308091599|gb|EFO41294.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308109554|gb|EFO47094.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|308112848|gb|EFO50388.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|328472235|gb|EGF43105.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 209 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIM 203 >gi|21221661|ref|NP_627440.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|1293660|gb|AAB08053.1| AbsA2 [Streptomyces coelicolor] gi|4490635|emb|CAB38597.1| two component system response regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARN--- 173 L G+++ S+ L + V A +++T+ RS + Sbjct: 94 LDQGVAGFLLKASDPRDLISGVRAVASGGSCLSPLVARRLMTELRRAPSPRSEVSGERTT 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L + G G ++ EIA++L L T+ Y+ + +L+ NR+QA A G Sbjct: 154 LLTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|325917865|ref|ZP_08180041.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325535911|gb|EGD07731.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 210 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F+ + + +ERE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 135 RARYQFRDQQPPSETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 195 RDRTRAVLKAITLRVI 210 >gi|255523094|ref|ZP_05390066.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|255513209|gb|EET89477.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] Length = 242 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE G +++EI EKL +S +TV ++ + K++ N+++ I Sbjct: 184 LTNREKEIAGYICMGLSNKEIGEKLFISANTVKNHVYNIYKKVNVKNKVELI 235 >gi|148555884|ref|YP_001263466.1| response regulator receiver protein [Sphingomonas wittichii RW1] gi|148501074|gb|ABQ69328.1| response regulator receiver protein [Sphingomonas wittichii RW1] Length = 208 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L DG ++ IA +L +S TV Y + KL + +A+ A Sbjct: 141 DRLTPRERDVLLGLIDGKANKIIAYELDISPRTVEIYRANLMDKLGVRSVAEAVRIAFAA 200 Query: 232 GYI 234 G + Sbjct: 201 GLV 203 >gi|15895522|ref|NP_348871.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025256|gb|AAK80211.1|AE007726_2 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325509670|gb|ADZ21306.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 213 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 28/54 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE +L G +++EI+E L +S TV Y+ KL R Q +A Sbjct: 154 LTEREMEITKLVTSGKSNKEISETLFISEGTVKNYISKILKKLKLQRRTQLLAI 207 >gi|51891164|ref|YP_073855.1| two-component response regulator variant [Symbiobacterium thermophilum IAM 14863] gi|51854853|dbj|BAD39011.1| two-component response regulator variant [Symbiobacterium thermophilum IAM 14863] Length = 78 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S LT RE +L DGYTS+ IA L +S T + + S KL+ + + Sbjct: 2 ATSRYEELTPREQEVFRLLVDGYTSKAIARALYISPKTADKHRASIMRKLEVNTFPELVR 61 Query: 227 KAIRFGYI 234 A+ G + Sbjct: 62 YAVSIGLL 69 >gi|313106484|ref|ZP_07792714.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310879216|gb|EFQ37810.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 268 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 68/226 (30%), Gaps = 23/226 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 + L++ + N + ++ E H + D F Sbjct: 30 LILLLRQHLPFDNALAIFYPANGVPVALEEYDAEPHAGPASMLAY--LNGLYLLDPFYQA 87 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 GL +++ + + + + + F +++ + + + Sbjct: 88 CREGLASGLYRLEEIAPDHFRQSEYYLSYFHDNVLEDEVQFILQVPDRGALSLSLGMQRI 147 Query: 140 MLANE--VIIEAHGACYQVITDFLELFKKRSSAARN-------------------LTERE 178 E ++ ++ + +R A L+ERE Sbjct: 148 FADEECGMLGLLSSWVLALMQQHWQQRSQRLLPAAPQEEMATQIRDALSHFGASVLSERE 207 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L GY+S+ +AE+L +S T+ + KLD ++ + Sbjct: 208 LEIARLILRGYSSKAMAERLAISPETIKVHRRHLYAKLDISSQPEL 253 >gi|312200374|ref|YP_004020435.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231710|gb|ADP84565.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 219 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE L+L G ++ EIA L + TV + KL +RIQA+ Sbjct: 148 TRALADLTPREREVLELMAQGLSNREIARHLVVEESTVRTHAKRVLAKLGLRDRIQAVIF 207 Query: 228 AIRFGY 233 A G Sbjct: 208 AYENGI 213 >gi|254693110|ref|ZP_05154938.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 3 str. Tulya] gi|261213346|ref|ZP_05927627.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260914953|gb|EEX81814.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 213 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA Sbjct: 140 ESLIARLRTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 199 Query: 225 IAKAIRFG 232 + R G Sbjct: 200 VILLSRIG 207 >gi|206559746|ref|YP_002230510.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198035787|emb|CAR51678.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 265 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 68/246 (27%), Gaps = 29/246 (11%) Query: 8 GKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 G+ +L + + LI+ + ++ + P+ Sbjct: 15 GRLIETLDQPGFWLSLIRLIEEYVAVDSWV--ALMFGDGRPQVFAECAYEGGGPDPLFRD 72 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D F +++ + R + + F V L Sbjct: 73 YVQGLYLL-DPFYIANRDAPTSGLFRLSDVAPECFRDTEYYTRYFTHNVVEDEVQFNVVL 131 Query: 125 GFHKNGYVIFTSEFL-MLANEVIIEAHGACYQVITD--------FLELFKKRSSAAR--- 172 + + S+ + +++ + E R A Sbjct: 132 DDTRTLCLSLGSKRRFSPEHVALLDLVRPWVAALMRQRFAYEPMLAEPAPSRRPGADAGN 191 Query: 173 -----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE ++L G +++E+A KL +S TV + + KL ++ Sbjct: 192 GFEHAMARLGTPLTARELDVIRLILSGRSNKEVASKLDISAETVKVHRRNIYAKLAINSQ 251 Query: 222 IQAIAK 227 + A Sbjct: 252 SELFAL 257 >gi|46201852|ref|ZP_00208275.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 238 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LT R+ L L G G +++EIA L L+ TV ++ + L+ NR +A+ A Sbjct: 167 SAIAALTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAA 226 Query: 229 IRFGY 233 G Sbjct: 227 SHLGL 231 >gi|291300883|ref|YP_003512161.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570103|gb|ADD43068.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 427 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + L RE L G + IAE+L +S +TV ++G+ KL +R +A Sbjct: 353 RPAPLPELNPRELDVLAKLAGGLRNRRIAEELHISENTVKFHVGNILQKLGVASRNEAAV 412 Query: 227 KAIRFGY 233 A G Sbjct: 413 LARDAGI 419 >gi|225175001|ref|ZP_03728998.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169641|gb|EEG78438.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 205 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +K LT RE L+ G +++IAE L +S HTV ++G KL+ +R Sbjct: 132 ALEEKNEDKLSELTTREMEVLKFLSRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDR 191 Query: 222 IQAIAKAI 229 QA + Sbjct: 192 TQAALYGV 199 >gi|196231768|ref|ZP_03130625.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224240|gb|EDY18753.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 216 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + +LT RE ++ +G T++E+A+ LG+S+ T ++ + KL + I Sbjct: 147 RPAPGNSLTSREREAVKFIAEGRTNKELADVLGVSLRTAESHRAAVMQKLGLKTIGELIR 206 Query: 227 KAIRFGYI 234 A+R G I Sbjct: 207 YALRNGII 214 >gi|52222873|gb|AAU34214.1| two component response regulator MppU [Streptomyces hygroscopicus] Length = 222 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE +G T+ +IA +L +S TV ++ S KL NR+ +A GY Sbjct: 156 LTEREVEIAGKVAEGKTNSDIARELFISAGTVKTHVASIQRKLQVRNRVGVAVRAWELGY 215 >gi|51244367|ref|YP_064251.1| two-component system response regulator [Desulfotalea psychrophila LSv54] gi|50875404|emb|CAG35244.1| related to two-component system response regulator [Desulfotalea psychrophila LSv54] Length = 197 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L++RE +G +++EIA+K+ +S+ TV A+L S K NR++ Sbjct: 139 KLSKREQEVASCVAEGMSNQEIADKMYVSLRTVKAHLSSIYEKTGLRNRLEL 190 >gi|307325089|ref|ZP_07604293.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889235|gb|EFN20217.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 222 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 14/147 (9%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 + + ++ AG + + + +L Sbjct: 84 FDVDEYVHAALRAGASGFLLKDARPEELLAG----IHAVAGGDAVIAPALTRRILDEYAR 139 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 +LTERE L G G+T+ EIA + ++ TV Sbjct: 140 ----------HVPARRGDPGEDPRVASLTEREREILVAIGKGWTNGEIAARFVVAESTVK 189 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++G K+ A +RIQA+ A G Sbjct: 190 THVGRVLAKIGARDRIQAVIFAYDRGL 216 >gi|325676385|ref|ZP_08156064.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325552946|gb|EGD22629.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 236 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + ++ + L+++E + L G G T+ EIAE+L L+ T+ Y Sbjct: 151 LDSRATAALMQRMR-SERTADPLAELSDQERAVFDLIGQGLTNREIAERLFLAEKTIKNY 209 Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231 + KL R QA A Sbjct: 210 VSRLLAKLGMQRRTQAAVLATEL 232 >gi|291448479|ref|ZP_06587869.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291351426|gb|EFE78330.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length = 168 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L L G ++ I L ++ TV A+L KL +R +A+ A+R G Sbjct: 97 PLTRRQKEVLNLLAQGLSNRRIGRALHITEQTVKAHLHMVYHKLGVADRTEAVVIALRQG 156 Query: 233 YI 234 + Sbjct: 157 LV 158 >gi|284047162|ref|YP_003397502.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951383|gb|ADB54127.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 228 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 31/174 (17%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + + +A V VI + +A + ++ Sbjct: 55 LDVHLPDGGGQAVIPAVHAERPGVRFLALSVSDAAEDVVAVIRSGARGYVTKSIAPDELV 114 Query: 148 EAH------------GACYQVITDFLELFKKRS---------------SAARNLTERETS 180 +A V+ F LT RE Sbjct: 115 DAIHRVADGDAVFSPWLAGFVLDAFGGGGGGGEGGGRGAGAAGAGGGDPELDQLTAREQD 174 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY +EI +L +SV TV +++ + KL +R + A + I Sbjct: 175 VLLLIARGYMYKEIGARLHISVKTVESHVSNVLRKLQLSSRHELTRWAAQRRMI 228 >gi|297193492|ref|ZP_06910890.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718233|gb|EDY62141.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 7/138 (5%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-- 161 + AG + + + V L Sbjct: 84 FDLDEYAYKGLRAGASGFLIKDAMPEELLSGIRAVAAGDAVVAPSLTRRLLDTYVQHLPE 143 Query: 162 -----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LTERE L + G G+T+ EIA + L+ TV ++ K Sbjct: 144 STAAGTVEPVPDERLARLTEREREILTVIGQGWTNTEIASRFHLAESTVKTHVSRILAKT 203 Query: 217 DAVNRIQAIAKAIRFGYI 234 A +R+QA+ A + Sbjct: 204 GARDRVQAVILAYDTRLV 221 >gi|326793852|ref|YP_004311672.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326544616|gb|ADZ89836.1| two component transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 217 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F+ + K+ + A LT+RET L G ++E+A L +SV TV + + KL+ Sbjct: 143 FVAVEKESDTQAEALTKRETDVLVELASGRANKEVARSLNISVRTVETHRQNIKNKLNIH 202 Query: 220 NRIQAIAKAIRFGY 233 AI G Sbjct: 203 TTAGLTKYAIDKGL 216 >gi|302528552|ref|ZP_07280894.1| two-component system response regulator [Streptomyces sp. AA4] gi|302437447|gb|EFL09263.1| two-component system response regulator [Streptomyces sp. AA4] Length = 216 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 5/128 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKK 166 + AG G V ++ +L+ E ++ Sbjct: 91 IRALRAGAAGFLVKSTPPEDLIGLVRVAADGHTVLSPSAARRLVALSADGHRRDDEARRR 150 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LTERE L G+G ++ +IA +L L+ TV +Y+ VKLD NR QA Sbjct: 151 TA----GLTERERDVLACLGEGLSNADIAARLHLAEATVKSYVSRMLVKLDCTNRTQAGL 206 Query: 227 KAIRFGYI 234 A G + Sbjct: 207 LAHEAGLV 214 >gi|291303233|ref|YP_003514511.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572453|gb|ADD45418.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 214 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 14/166 (8%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNG 130 + + + L RL A + G Sbjct: 45 ALLATTTVDVALVDAKMPGMDGVALIRRLAAEHPSVACVILTTFDDDEYIFGGLAAGARG 104 Query: 131 YVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAA-RNLTERETSCLQLA 185 +++ + L + A G L L+ RE L Sbjct: 105 FLLKDTPPDELVTTLRRAAAGETVLGSPAAERVVARLRTDPHGTGLEALSAREREVGDLI 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G + EIA +L ++ TV ++ + KL +R Q + Sbjct: 165 AQGAHNREIARRLFITEGTVKNHVTALLRKLGMRDRTQLALFLAKH 210 >gi|227115196|ref|ZP_03828852.1| two-component system response regulator protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 209 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 11/160 (6%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--- 142 PI I ES L RL F I + + L Sbjct: 47 PIDVAVIDIAMPDESGLSLLTRLRQQRPNFRAIILSIYDTTAFVQSALDAGAGGYLTKRC 106 Query: 143 -NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194 E +++A + ++ LT RE L +G + + I Sbjct: 107 GPEELVQAVRVVSSGGLYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+L LS TV+ + + KL + ++ + A++ + Sbjct: 167 AEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206 >gi|17546614|ref|NP_520016.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428913|emb|CAD15597.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 252 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 11/188 (5%) Query: 49 QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108 ++ ++ + + + + P+ + + ++ + Sbjct: 53 MDHIVTVDFPIEYLAAIQNVAGGIDTPLMRRWFATRSPVYF---DAAAPTAETDRVWLAK 109 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--------NEVIIEAHGACYQVITDF 160 +A + H G + ++ H + + D Sbjct: 110 FIMHDLRNAVADGIYDEGHCIGTYFSFHRLPSINAPFLTSVLRDLTPVLHRTLMRAVADT 169 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + + L+ERE G G ++ EIA +S +TV +L K N Sbjct: 170 EKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCAN 229 Query: 221 RIQAIAKA 228 R+ A Sbjct: 230 RVGVAVLA 237 >gi|117927726|ref|YP_872277.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648189|gb|ABK52291.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 225 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 155 QVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +V+ + ++ LTE+E L+L G+G T+ +I E+L L+ TV Y+ S Sbjct: 138 RVLQRLRDQAERPEPGNPYAALTEQERRVLELIGEGLTNRQIGERLFLAEKTVKNYVSSI 197 Query: 213 TVKLDAVNRIQAIAKAIRF 231 KL R QA A+ Sbjct: 198 LAKLGLQRRTQAAVLAVEH 216 >gi|330809798|ref|YP_004354260.1| two-component system response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377906|gb|AEA69256.1| putative two-component system response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 222 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ E ++ + LT RE L L G+++ EI EKLG++ T A++ Sbjct: 132 VSARLLRRMTERGANGATQVQALTARERQVLGLVAGGFSNREIGEKLGIAPGTAKAHVER 191 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R QA + + G + Sbjct: 192 VIGKLGAADRTQAAVRGVALGLV 214 >gi|326381911|ref|ZP_08203604.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199337|gb|EGD56518.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 221 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 41/134 (30%), Gaps = 20/134 (14%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITDFLE-------- 162 +A V I + + +A V + L Sbjct: 85 LALSVSDAATDVIATIRAGARGYVTKTIDGGELADAVRRVAEGDAVFSPRLAGFVLDSFT 144 Query: 163 -----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +LT RE L+L GYT EIAE+L +SV TV + + K Sbjct: 145 GRSPVPEPQLDPELDSLTRREMEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQ 204 Query: 218 AVNRIQAIAKAIRF 231 NR A+ Sbjct: 205 QSNRNALTRWAVNR 218 >gi|253999547|ref|YP_003051610.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986226|gb|ACT51083.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 265 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE ++ +G T++EI L +S TV +L KLD +NR QA++K Sbjct: 203 QLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNHLQRIFKKLDVLNRAQAVSK 257 >gi|237654658|ref|YP_002890972.1| transcriptional regulator NarL [Thauera sp. MZ1T] gi|237625905|gb|ACR02595.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 214 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 16/156 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + L + V + L ++ EA Sbjct: 56 LDLNMRDGDGLDMLRGLRAARSEARVVMVTVSDSGEDVVAALRGGAEGYLLKDMEPEAML 115 Query: 152 ACY---------------QVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIA 195 ++ L + SA A LTE+E L+ G +++I Sbjct: 116 EALQAVAAGRVVIPPQLNHLLAAALRGESRPQSAGAAGLTEQELRILEKIAAGLPNKQIG 175 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L ++ TV ++ KL+ +R++A A+ Sbjct: 176 RELDIAEGTVKVHVKHILRKLELRSRVEAAVWAVEH 211 >gi|148273146|ref|YP_001222707.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831076|emb|CAN02021.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 224 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ + ++A LT+RE G ++ EIA L ++ TV ++ Sbjct: 139 QRLLERLAVERTAPPDPDTAALDVLTDRERVVFTRLVTGASNPEIARDLSIAEVTVKTHV 198 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 G KL +R+ + A R G Sbjct: 199 GHILTKLAVRDRVHLVIWAHRRGL 222 >gi|300691151|ref|YP_003752146.1| transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] gi|299078211|emb|CBJ50858.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] Length = 252 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 11/188 (5%) Query: 49 QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108 ++ ++ + + + + P+ + + ++ + Sbjct: 53 MDHIVTVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---EATAPTAEVDRVWLAK 109 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE--------AHGACYQVITDF 160 +A V H G + + H + + D Sbjct: 110 FVAHDLRNAVADGVYDEGHCIGTYFSFHRLPSIDAPFLASVLRDLTPVLHRTLMRAVADS 169 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + L+ERE G G ++ EIA +S +TV +L K N Sbjct: 170 ERTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCAN 229 Query: 221 RIQAIAKA 228 R+ A Sbjct: 230 RVGVAVLA 237 >gi|217974804|ref|YP_002359555.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217499939|gb|ACK48132.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 209 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE---AHGACYQVI 157 + + + V ++ ++++E ++VI Sbjct: 69 LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVI 128 Query: 158 TDFLE--LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +D +E L++ + + +LT RE L+ +G ++ I+E L +S TV ++ Sbjct: 129 SDEVEEYLYELKDATDEQEWISSLTPRELQILEQLAEGLSNRMISEHLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|126641440|ref|YP_001084424.1| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 257 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 193 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 247 >gi|37528119|ref|NP_931464.1| hypothetical protein plu4288 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787556|emb|CAE16660.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 251 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 63/224 (28%), Gaps = 28/224 (12%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L ++ I N +Y + + + + D+ + D F Sbjct: 24 LLTWLEQFITFDNAIVYAFEQGSP----PRCLSKTEKKNSDAINQIYQQGAYLQDPFYQA 79 Query: 80 FNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 G + + + ++L + + F E Sbjct: 80 LIDGAGTDLFTLRELVPSGFY--HTDYYLNFYRKTGWQDETGVLLKLSPQRQLGLFFGKE 137 Query: 138 FLMLANEVIIEAHGACYQ----VITDFLELFKK---RSSAAR----------NLTERETS 180 I + H + +I L + AA LT RE Sbjct: 138 NQPF---FIQKPHWKNLKTVLEIIRSVARLHDDMTQQPPAAEMVCLDTQTRYALTPRECE 194 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++L G S +IAEKL +S TV + + KL ++ + Sbjct: 195 IVELILQGKGSPQIAEKLFISTGTVKNHRKNIYQKLQIRSQAEL 238 >gi|323965314|gb|EGB60772.1| response regulator receiver domain-containing protein [Escherichia coli M863] Length = 209 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147 I E+ L RL F I + + L E ++ Sbjct: 53 IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112 Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A H C I L + + A LT RE L G + +EIA KL Sbjct: 113 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV+ + + KL+ + I+ + A+ + Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206 >gi|320450456|ref|YP_004202552.1| DNA-binding response regulator, LuxR family [Thermus scotoductus SA-01] gi|320150625|gb|ADW22003.1| DNA-binding response regulator, LuxR family [Thermus scotoductus SA-01] Length = 206 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%) Query: 153 CYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ L + + + +LT RE L+L G + +E+A+ LGLS TV + Sbjct: 118 APELKRRLLRVAQGEEKLKPPDLPSLTSREEEVLRLLAQGLSVKEMAKALGLSPDTVKDH 177 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L S KL A NR++A+ KA G++ Sbjct: 178 LESLYGKLLARNRVEALEKARSLGFL 203 >gi|311899923|dbj|BAJ32331.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 243 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 33/78 (42%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 E + + LT RE L+L G + +A+ L LSV TV ++ KL Sbjct: 143 FAGRHEPPPRLARELAGLTPREREVLRLVARGLPNPAVADHLELSVATVKTHVRRLLAKL 202 Query: 217 DAVNRIQAIAKAIRFGYI 234 A +R Q + A G + Sbjct: 203 HAHDRAQLVVIAYETGLV 220 >gi|281419800|ref|ZP_06250799.1| transcriptional regulator, LuxR family protein [Prevotella copri DSM 18205] gi|281406176|gb|EFB36856.1| transcriptional regulator, LuxR family protein [Prevotella copri DSM 18205] Length = 318 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIA+ L +S++TV + + KL + AI Sbjct: 249 EQLSDREKDVIVALVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 NLV 311 >gi|163747813|ref|ZP_02155152.1| putative GerE family transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161378921|gb|EDQ03351.1| putative GerE family transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 186 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 156 VITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + L L A LT RE L +G ++ IA LGLS HTV ++ Sbjct: 102 AVQASLSLHDPALKVAKDELTNREMQVLTCVAEGKQNKVIANSLGLSEHTVKLHIHHVIS 161 Query: 215 KLDAVNRIQAIAK 227 KL NR +A Sbjct: 162 KLGVNNRTEAAVW 174 >gi|170726595|ref|YP_001760621.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169811942|gb|ACA86526.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 218 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT R+ L+ G +++IA L +S TV +++ S KL NR+QA+ Sbjct: 152 SLTRRQLMVLKCMTKGEANKQIAYNLNVSETTVKSHVSSILKKLGVSNRVQAVV 205 >gi|39937308|ref|NP_949584.1| response regulator FixJ [Rhodopseudomonas palustris CGA009] gi|192293088|ref|YP_001993693.1| response regulator FixJ [Rhodopseudomonas palustris TIE-1] gi|39651166|emb|CAE29689.1| two-component nitrogen fixation transcriptional regulator fixJ, LuxR family [Rhodopseudomonas palustris CGA009] gi|192286837|gb|ACF03218.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 203 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 5/111 (4%) Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + S+F+ + +IE Q + + ++ ++L+ RE + Sbjct: 91 EAMKLGASDFIEKPFDDDRLIGLIELALKQAQEGAKSEAVTQDIATRIQSLSPRERQVMD 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++ IA + +S T+ Y + K+ A + + + A+R G I Sbjct: 151 GLIAGMSNKVIAREFDISPRTIEVYRANVMTKMQATSLSELVRMAMRGGVI 201 >gi|15804265|ref|NP_290304.1| DNA-binding transcriptional activator UhpA [Escherichia coli O157:H7 EDL933] gi|15833860|ref|NP_312633.1| DNA-binding transcriptional activator UhpA [Escherichia coli O157:H7 str. Sakai] gi|16131539|ref|NP_418125.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli str. K-12 substr. MG1655] gi|26250413|ref|NP_756453.1| DNA-binding transcriptional activator UhpA [Escherichia coli CFT073] gi|30064982|ref|NP_839153.1| DNA-binding transcriptional activator UhpA [Shigella flexneri 2a str. 2457T] gi|56480419|ref|NP_709525.2| DNA-binding transcriptional activator UhpA [Shigella flexneri 2a str. 301] gi|74313989|ref|YP_312408.1| DNA-binding transcriptional activator UhpA [Shigella sonnei Ss046] gi|82546057|ref|YP_410004.1| DNA-binding transcriptional activator UhpA [Shigella boydii Sb227] gi|89110343|ref|AP_004123.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli str. K-12 substr. W3110] gi|110644017|ref|YP_671747.1| DNA-binding transcriptional activator UhpA [Escherichia coli 536] gi|110807635|ref|YP_691155.1| DNA-binding transcriptional activator UhpA [Shigella flexneri 5 str. 8401] gi|157156118|ref|YP_001465154.1| DNA-binding transcriptional activator UhpA [Escherichia coli E24377A] gi|157163151|ref|YP_001460469.1| DNA-binding transcriptional activator UhpA [Escherichia coli HS] gi|168748618|ref|ZP_02773640.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4113] gi|168753555|ref|ZP_02778562.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4401] gi|168759852|ref|ZP_02784859.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4501] gi|168772299|ref|ZP_02797306.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4196] gi|168779887|ref|ZP_02804894.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4076] gi|168785620|ref|ZP_02810627.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC869] gi|168798701|ref|ZP_02823708.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC508] gi|170018090|ref|YP_001723044.1| DNA-binding transcriptional activator UhpA [Escherichia coli ATCC 8739] gi|170083176|ref|YP_001732496.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli str. K-12 substr. DH10B] gi|170684214|ref|YP_001745997.1| DNA-binding transcriptional activator UhpA [Escherichia coli SMS-3-5] gi|187730907|ref|YP_001882486.1| DNA-binding transcriptional activator UhpA [Shigella boydii CDC 3083-94] gi|188493334|ref|ZP_03000604.1| transcriptional regulatory protein UhpA [Escherichia coli 53638] gi|191170357|ref|ZP_03031910.1| transcriptional regulatory protein UhpA [Escherichia coli F11] gi|193063810|ref|ZP_03044897.1| transcriptional regulatory protein UhpA [Escherichia coli E22] gi|194435875|ref|ZP_03067978.1| transcriptional regulatory protein UhpA [Escherichia coli 101-1] gi|195936288|ref|ZP_03081670.1| DNA-binding transcriptional activator UhpA [Escherichia coli O157:H7 str. EC4024] gi|208808592|ref|ZP_03250929.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4206] gi|208813985|ref|ZP_03255314.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4045] gi|208819791|ref|ZP_03260111.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4042] gi|209398144|ref|YP_002273200.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4115] gi|209921144|ref|YP_002295228.1| DNA-binding transcriptional activator UhpA [Escherichia coli SE11] gi|217324810|ref|ZP_03440894.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. TW14588] gi|218551201|ref|YP_002384992.1| DNA-binding transcriptional activator UhpA [Escherichia fergusonii ATCC 35469] gi|218556234|ref|YP_002389147.1| DNA-binding transcriptional activator UhpA [Escherichia coli IAI1] gi|218697391|ref|YP_002405058.1| DNA-binding transcriptional activator UhpA [Escherichia coli 55989] gi|218702513|ref|YP_002410142.1| DNA-binding transcriptional activator UhpA [Escherichia coli IAI39] gi|227883891|ref|ZP_04001696.1| response regulator [Escherichia coli 83972] gi|238902760|ref|YP_002928556.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli BW2952] gi|253771468|ref|YP_003034299.1| DNA-binding transcriptional activator UhpA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038887|ref|ZP_04872939.1| transcriptional regulatory protein UhpA [Escherichia sp. 1_1_43] gi|254163622|ref|YP_003046730.1| DNA-binding transcriptional activator UhpA [Escherichia coli B str. REL606] gi|254795677|ref|YP_003080514.1| DNA-binding transcriptional activator UhpA [Escherichia coli O157:H7 str. TW14359] gi|256025599|ref|ZP_05439464.1| DNA-binding transcriptional activator UhpA [Escherichia sp. 4_1_40B] gi|260846545|ref|YP_003224323.1| DNA-binding response regulator UhpA in two-component regulatory system wtih UhpB [Escherichia coli O103:H2 str. 12009] gi|260857919|ref|YP_003231810.1| DNA-binding response regulator UhpA in two-component regulatory system wtih UhpB [Escherichia coli O26:H11 str. 11368] gi|260870399|ref|YP_003236801.1| DNA-binding response regulator UhpA in two-component regulatory system wtih UhpB [Escherichia coli O111:H- str. 11128] gi|261225825|ref|ZP_05940106.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli O157:H7 str. FRIK2000] gi|261258870|ref|ZP_05951403.1| DNA-binding response regulator UhpA in two-component regulatory system wtih UhpB [Escherichia coli O157:H7 str. FRIK966] gi|291285092|ref|YP_003501910.1| transcriptional regulatory protein UhpA [Escherichia coli O55:H7 str. CB9615] gi|293413120|ref|ZP_06655786.1| conserved hypothetical protein [Escherichia coli B354] gi|293417148|ref|ZP_06659775.1| two-component system [Escherichia coli B185] gi|293463994|ref|ZP_06664408.1| two-component system [Escherichia coli B088] gi|297522028|ref|ZP_06940414.1| DNA-binding transcriptional activator UhpA [Escherichia coli OP50] gi|300984793|ref|ZP_07177116.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300988789|ref|ZP_07178831.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301028450|ref|ZP_07191696.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301047486|ref|ZP_07194563.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|301644338|ref|ZP_07244339.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|306815974|ref|ZP_07450112.1| DNA-binding transcriptional activator UhpA [Escherichia coli NC101] gi|307140369|ref|ZP_07499725.1| DNA-binding transcriptional activator UhpA [Escherichia coli H736] gi|307313261|ref|ZP_07592886.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|312972039|ref|ZP_07786213.1| transcriptional regulatory protein uhpA [Escherichia coli 1827-70] gi|331649497|ref|ZP_08350583.1| transcriptional regulatory protein UhpA [Escherichia coli M605] gi|331655325|ref|ZP_08356324.1| transcriptional regulatory protein UhpA [Escherichia coli M718] gi|331660015|ref|ZP_08360953.1| transcriptional regulatory protein UhpA [Escherichia coli TA206] gi|331670512|ref|ZP_08371351.1| transcriptional regulatory protein UhpA [Escherichia coli TA271] gi|331675164|ref|ZP_08375917.1| transcriptional regulatory protein UhpA [Escherichia coli TA280] gi|331685397|ref|ZP_08385983.1| transcriptional regulatory protein UhpA [Escherichia coli H299] gi|84029410|sp|P0AGA8|UHPA_ECO57 RecName: Full=Transcriptional regulatory protein uhpA gi|84029411|sp|P0AGA7|UHPA_ECOL6 RecName: Full=Transcriptional regulatory protein uhpA gi|84029412|sp|P0AGA6|UHPA_ECOLI RecName: Full=Transcriptional regulatory protein uhpA gi|84029413|sp|P0AGA9|UHPA_SHIFL RecName: Full=Transcriptional regulatory protein uhpA gi|12518501|gb|AAG58868.1|AE005598_12 response regulator, positive activator of uhpT transcription (sensor, uhpB) [Escherichia coli O157:H7 str. EDL933] gi|26110843|gb|AAN83027.1|AE016769_142 Transcriptional Regulatory protein uhpA [Escherichia coli CFT073] gi|148112|gb|AAA24720.1| UhpA protein [Escherichia coli] gi|148117|gb|AAA24724.1| hexosephosphate utilization protein [Escherichia coli] gi|290518|gb|AAA62021.1| hexosephosphate utilization protein [Escherichia coli] gi|1790102|gb|AAC76692.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli str. K-12 substr. MG1655] gi|13364081|dbj|BAB38029.1| response regulator UhpA [Escherichia coli O157:H7 str. Sakai] gi|30043243|gb|AAP18964.1| response regulator [Shigella flexneri 2a str. 2457T] gi|56383970|gb|AAN45232.2| response regulator [Shigella flexneri 2a str. 301] gi|73857466|gb|AAZ90173.1| response regulator, positive activator of uhpT transcription (sensor, uhpB) [Shigella sonnei Ss046] gi|81247468|gb|ABB68176.1| UhpA [Shigella boydii Sb227] gi|85676374|dbj|BAE77624.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli str. K12 substr. W3110] gi|110345609|gb|ABG71846.1| transcriptional regulatory protein UhpA [Escherichia coli 536] gi|110617183|gb|ABF05850.1| Transcriptional Regulatory protein uhpA [Shigella flexneri 5 str. 8401] gi|157068831|gb|ABV08086.1| transcriptional regulatory protein UhpA [Escherichia coli HS] gi|157078148|gb|ABV17856.1| transcriptional regulatory protein UhpA [Escherichia coli E24377A] gi|169753018|gb|ACA75717.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|169891011|gb|ACB04718.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli str. K-12 substr. DH10B] gi|170521932|gb|ACB20110.1| transcriptional regulatory protein UhpA [Escherichia coli SMS-3-5] gi|187427899|gb|ACD07173.1| transcriptional regulatory protein UhpA [Shigella boydii CDC 3083-94] gi|187771641|gb|EDU35485.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4196] gi|188016946|gb|EDU55068.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4113] gi|188488533|gb|EDU63636.1| transcriptional regulatory protein UhpA [Escherichia coli 53638] gi|189002329|gb|EDU71315.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4076] gi|189358985|gb|EDU77404.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4401] gi|189369800|gb|EDU88216.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4501] gi|189374507|gb|EDU92923.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC869] gi|189378793|gb|EDU97209.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC508] gi|190909165|gb|EDV68751.1| transcriptional regulatory protein UhpA [Escherichia coli F11] gi|192930525|gb|EDV83132.1| transcriptional regulatory protein UhpA [Escherichia coli E22] gi|194425418|gb|EDX41402.1| transcriptional regulatory protein UhpA [Escherichia coli 101-1] gi|208728393|gb|EDZ77994.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4206] gi|208735262|gb|EDZ83949.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4045] gi|208739914|gb|EDZ87596.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4042] gi|209159544|gb|ACI36977.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4115] gi|209754358|gb|ACI75486.1| hypothetical protein ECs4606 [Escherichia coli] gi|209754360|gb|ACI75487.1| hypothetical protein ECs4606 [Escherichia coli] gi|209754362|gb|ACI75488.1| hypothetical protein ECs4606 [Escherichia coli] gi|209754364|gb|ACI75489.1| hypothetical protein ECs4606 [Escherichia coli] gi|209754366|gb|ACI75490.1| hypothetical protein ECs4606 [Escherichia coli] gi|209914403|dbj|BAG79477.1| two-component response regulator [Escherichia coli SE11] gi|217321031|gb|EEC29455.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. TW14588] gi|218354123|emb|CAV00698.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli 55989] gi|218358742|emb|CAQ91400.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia fergusonii ATCC 35469] gi|218363002|emb|CAR00640.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli IAI1] gi|218372499|emb|CAR20375.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli IAI39] gi|222035387|emb|CAP78132.1| Transcriptional regulatory protein uhpA [Escherichia coli LF82] gi|226838852|gb|EEH70879.1| transcriptional regulatory protein UhpA [Escherichia sp. 1_1_43] gi|227839169|gb|EEJ49635.1| response regulator [Escherichia coli 83972] gi|238860874|gb|ACR62872.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli BW2952] gi|242379208|emb|CAQ34012.1| UhpA transcriptional activator [Escherichia coli BL21(DE3)] gi|253322512|gb|ACT27114.1| two component transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975523|gb|ACT41194.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli B str. REL606] gi|253979679|gb|ACT45349.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli BL21(DE3)] gi|254595077|gb|ACT74438.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli O157:H7 str. TW14359] gi|257756568|dbj|BAI28070.1| DNA-binding response regulator UhpA in two-component regulatory system wtih UhpB [Escherichia coli O26:H11 str. 11368] gi|257761692|dbj|BAI33189.1| DNA-binding response regulator UhpA in two-component regulatory system wtih UhpB [Escherichia coli O103:H2 str. 12009] gi|257766755|dbj|BAI38250.1| DNA-binding response regulator UhpA in two-component regulatory system wtih UhpB [Escherichia coli O111:H- str. 11128] gi|260447310|gb|ACX37732.1| two component transcriptional regulator, LuxR family [Escherichia coli DH1] gi|281180726|dbj|BAI57056.1| two-component response regulator [Escherichia coli SE15] gi|281603100|gb|ADA76084.1| Transcriptional regulatory protein uhpA [Shigella flexneri 2002017] gi|284923751|emb|CBG36848.1| two-component system response regulator [Escherichia coli 042] gi|290764965|gb|ADD58926.1| transcriptional regulatory protein UhpA [Escherichia coli O55:H7 str. CB9615] gi|291321626|gb|EFE61062.1| two-component system [Escherichia coli B088] gi|291431179|gb|EFF04172.1| two-component system [Escherichia coli B185] gi|291468253|gb|EFF10748.1| conserved hypothetical protein [Escherichia coli B354] gi|299878561|gb|EFI86772.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300300601|gb|EFJ56986.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300305857|gb|EFJ60377.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300408343|gb|EFJ91881.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301077279|gb|EFK92085.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|305850370|gb|EFM50827.1| DNA-binding transcriptional activator UhpA [Escherichia coli NC101] gi|306906944|gb|EFN37453.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|307555813|gb|ADN48588.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli ABU 83972] gi|309704120|emb|CBJ03467.1| two-component system response regulator [Escherichia coli ETEC H10407] gi|310334416|gb|EFQ00621.1| transcriptional regulatory protein uhpA [Escherichia coli 1827-70] gi|312948240|gb|ADR29067.1| DNA-binding transcriptional activator UhpA [Escherichia coli O83:H1 str. NRG 857C] gi|313647672|gb|EFS12120.1| transcriptional regulatory protein uhpA [Shigella flexneri 2a str. 2457T] gi|315062977|gb|ADT77304.1| DNA-binding response regulator in two-component regulatory system with uhpB [Escherichia coli W] gi|315138251|dbj|BAJ45410.1| transcriptional regulatory protein UhpA [Escherichia coli DH1] gi|315254644|gb|EFU34612.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|315292893|gb|EFU52245.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315296912|gb|EFU56199.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|315618626|gb|EFU99212.1| transcriptional regulatory protein uhpA [Escherichia coli 3431] gi|320185558|gb|EFW60324.1| Transcriptional regulatory protein UhpA [Shigella flexneri CDC 796-83] gi|320191227|gb|EFW65877.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC1212] gi|320193778|gb|EFW68411.1| Transcriptional regulatory protein UhpA [Escherichia coli WV_060327] gi|320639396|gb|EFX09011.1| DNA-binding transcriptional activator UhpA [Escherichia coli O157:H7 str. G5101] gi|320644841|gb|EFX13877.1| DNA-binding transcriptional activator UhpA [Escherichia coli O157:H- str. 493-89] gi|320650105|gb|EFX18601.1| DNA-binding transcriptional activator UhpA [Escherichia coli O157:H- str. H 2687] gi|320655452|gb|EFX23387.1| DNA-binding transcriptional activator UhpA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661078|gb|EFX28514.1| DNA-binding transcriptional activator UhpA [Escherichia coli O55:H7 str. USDA 5905] gi|320666203|gb|EFX33209.1| DNA-binding transcriptional activator UhpA [Escherichia coli O157:H7 str. LSU-61] gi|323164723|gb|EFZ50518.1| transcriptional regulatory protein uhpA [Shigella sonnei 53G] gi|323173283|gb|EFZ58912.1| transcriptional regulatory protein uhpA [Escherichia coli LT-68] gi|323177678|gb|EFZ63262.1| transcriptional regulatory protein uhpA [Escherichia coli 1180] gi|323182462|gb|EFZ67866.1| transcriptional regulatory protein uhpA [Escherichia coli 1357] gi|323376430|gb|ADX48698.1| two component transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323934785|gb|EGB31167.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323939146|gb|EGB35360.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323944138|gb|EGB40218.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323959735|gb|EGB55385.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323971147|gb|EGB66393.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|324008070|gb|EGB77289.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324012667|gb|EGB81886.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|324111568|gb|EGC05549.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|324115979|gb|EGC09905.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|325499479|gb|EGC97338.1| transcriptional regulatory protein UhpA [Escherichia fergusonii ECD227] gi|326337278|gb|EGD61113.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. 1044] gi|326341650|gb|EGD65439.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. 1125] gi|331041995|gb|EGI14139.1| transcriptional regulatory protein UhpA [Escherichia coli M605] gi|331047340|gb|EGI19418.1| transcriptional regulatory protein UhpA [Escherichia coli M718] gi|331053230|gb|EGI25263.1| transcriptional regulatory protein UhpA [Escherichia coli TA206] gi|331062574|gb|EGI34494.1| transcriptional regulatory protein UhpA [Escherichia coli TA271] gi|331067609|gb|EGI39011.1| transcriptional regulatory protein UhpA [Escherichia coli TA280] gi|331077768|gb|EGI48980.1| transcriptional regulatory protein UhpA [Escherichia coli H299] gi|332089563|gb|EGI94667.1| transcriptional regulatory protein uhpA [Shigella boydii 3594-74] gi|332345659|gb|AEE58993.1| transcriptional regulatory protein UhpA [Escherichia coli UMNK88] gi|332750484|gb|EGJ80893.1| transcriptional regulatory protein uhpA [Shigella flexneri K-671] gi|332750657|gb|EGJ81065.1| transcriptional regulatory protein uhpA [Shigella flexneri 4343-70] gi|332751700|gb|EGJ82098.1| transcriptional regulatory protein uhpA [Shigella flexneri 2747-71] gi|332764035|gb|EGJ94272.1| uhpA transcriptional activator [Shigella flexneri 2930-71] gi|332996079|gb|EGK15706.1| transcriptional regulatory protein uhpA [Shigella flexneri VA-6] gi|332997128|gb|EGK16744.1| transcriptional regulatory protein uhpA [Shigella flexneri K-218] gi|332997703|gb|EGK17314.1| transcriptional regulatory protein uhpA [Shigella flexneri K-272] gi|333013233|gb|EGK32606.1| transcriptional regulatory protein uhpA [Shigella flexneri K-304] gi|333013625|gb|EGK32990.1| transcriptional regulatory protein uhpA [Shigella flexneri K-227] Length = 196 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|330887817|gb|EGH20478.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str. 301020] Length = 903 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 839 SDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKV 898 Query: 231 FGYI 234 G + Sbjct: 899 LGLL 902 >gi|326332686|ref|ZP_08198949.1| putative transcriptional regulatory protein DegU [Nocardioidaceae bacterium Broad-1] gi|325949514|gb|EGD41591.1| putative transcriptional regulatory protein DegU [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R LT RE L L G ++ +IAEKL +SV+T+ +++ A K++ R Q Sbjct: 121 REDRLGTVAGLTTREVEVLALITQGLSNADIAEKLVVSVNTLKSHIRQAYRKIEVTTRSQ 180 Query: 224 AIAKAIRFGY 233 A++ AI G+ Sbjct: 181 AVSWAITHGF 190 >gi|284046302|ref|YP_003396642.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950523|gb|ADB53267.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 244 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G + + ++A + A D + LT+RE + L Sbjct: 130 AAGEGLLAPSVTRRLIARFAALAPPPADAAGTADDGAAALPAAERLEVLTDREREVVALV 189 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G T+ E+AE+L +S T ++ A KLDA +R Q + A G + Sbjct: 190 GAGLTNHELAERLVISPATAKTHVSRAMGKLDARDRAQLVVLAYESGLV 238 >gi|284041733|ref|YP_003392073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945954|gb|ADB48698.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 225 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ ++A++L L+VHTV ++ KL +R QA+ A G+ Sbjct: 160 LTEREAEILRLVARGMSNADVADELVLAVHTVKTHVARILAKLAVRDRTQAVVVAYESGF 219 Query: 234 I 234 + Sbjct: 220 V 220 >gi|166368457|ref|YP_001660730.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090830|dbj|BAG05538.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYT 190 E ++ + + L+ + S LT E +QL G Sbjct: 120 PFEPEELVARVESSLKQAGRLLKRSTRIHSPDVTPVQVQGNVELTPTELKVVQLVAQGLA 179 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + EIA KL +S T+ +++ + K NR + AI Sbjct: 180 NREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELSQWAIE 219 >gi|329938540|ref|ZP_08287965.1| luxR family two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329302513|gb|EGG46404.1| luxR family two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAARNLTERETSCLQLAGD 187 G + ++ + A + +++A+ + + ++ + A LT RE L L G+ Sbjct: 118 QGSDLVSAVRTVAAGQSLLDANATARLLARLRGGQEQEEEAEALPGLTPREREILALIGE 177 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G T+ +I ++L L+ TV ++ KL R+QA A + Sbjct: 178 GLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRVQAAVIATQA 221 >gi|258653619|ref|YP_003202775.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556844|gb|ACV79786.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Nakamurella multipartita DSM 44233] Length = 901 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G + + + + + + LT RE L++ G G Sbjct: 805 AGTRAWARAHPDVPRDWLAALVAQA----------GDDPETPSSGLTARELDILRMVGSG 854 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+++IA L ++V+TV YL + KL A NR +A A A R G Sbjct: 855 RTNQQIATSLTVTVNTVKWYLKNIYTKLGATNRTEATAIARREGL 899 >gi|229514137|ref|ZP_04403598.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21] gi|229348117|gb|EEO13075.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21] Length = 208 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + + I E+ L RL F I + G Sbjct: 40 FHALTQSE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + S+ + V C + + ++ +LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 157 VQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHQLL 205 >gi|194446637|ref|YP_002042854.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405300|gb|ACF65522.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 200 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPWDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195 >gi|167755537|ref|ZP_02427664.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402] gi|237734285|ref|ZP_04564766.1| response regulator [Mollicutes bacterium D7] gi|167704476|gb|EDS19055.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402] gi|229382515|gb|EEO32606.1| response regulator [Coprobacillus sp. D7] Length = 224 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L + E +Q G G +++EIA+KL LS TV YL S KL+ +R Q A++ Sbjct: 155 RELNKPEWKVIQQVGFGLSNKEIAQKLFLSEGTVRNYLSSILSKLELRDRTQLAIWAVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|91790134|ref|YP_551086.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91699359|gb|ABE46188.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 214 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A +L++RE +L G + EIA +L LSV TV+ + + K+ N+ + I A Sbjct: 144 AAHGSLSDREFEVFRLLVAGVSVTEIAGRLNLSVKTVSTHKANLMHKMGLHNQSELIRYA 203 Query: 229 IRFGY 233 +R G Sbjct: 204 MRHGL 208 >gi|88807322|ref|ZP_01122834.1| response regulator like protein [Synechococcus sp. WH 7805] gi|88788536|gb|EAR19691.1| response regulator like protein [Synechococcus sp. WH 7805] Length = 234 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + S A L++RE LQ +G T+ EI E L ++ T ++ S KL+ +R Sbjct: 161 ALQSRNSGQAHALSDRERMVLQQLCNGLTNREIGEALTIAETTARGHVQSIMRKLNVKDR 220 Query: 222 IQAIAKAIRFGYI 234 A +AIR ++ Sbjct: 221 TAAAVEAIRRHWV 233 >gi|307292976|ref|ZP_07572822.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306881042|gb|EFN12258.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 204 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 12/130 (9%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVI------IEAHGACYQVITDFLELFKKRSS 169 GIA PV + I S A + I A ++ + + Sbjct: 73 RGIAMPVIILTGHGDVSIAVSAMKAGAVDFIEKPFEKAVLLAAIESAFERLADVEGRATR 132 Query: 170 AARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 AA L+ RE L+ G ++ IA LG+S TV + + KL + + Sbjct: 133 AADATIRIAALSGREQDVLKGLARGLPNKTIAYDLGISPRTVEVHRANLMTKLGVRSLSE 192 Query: 224 AIAKAIRFGY 233 A+ A G Sbjct: 193 ALRIAFSAGI 202 >gi|295695280|ref|YP_003588518.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410882|gb|ADG05374.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 223 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L GY + E+A++L +SV TV + + KL + I R Sbjct: 159 LTEREREVLVFLARGYQNREVAKELNISVKTVENHKANMMRKLGVSTVRELIEYGRRNRL 218 Query: 234 I 234 + Sbjct: 219 L 219 >gi|295096704|emb|CBK85794.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 210 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ L+ RE + L+ +G +++EIA++L LS T++A+ + KL + ++ I Sbjct: 144 AAVDMPLSNREVTVLRYLANGLSNKEIADQLLLSNKTISAHKSNIFSKLGVQSIVELIDY 203 Query: 228 AIRFGYI 234 A + Sbjct: 204 AKAHELL 210 >gi|254444518|ref|ZP_05057994.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198258826|gb|EDY83134.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 216 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 QV+ + +S LT+RE +QL G G ++ EIAE L LSV T+ ++ Sbjct: 129 RVADQVLHQIVSGPSNASASPVDRLTDRELEVVQLIGRGLSTREIAESLHLSVKTIESHR 188 Query: 210 GSATVKLDAVNRIQAIAKAIR 230 KL+ N + + +++ Sbjct: 189 AHVKEKLNLRNATELVQFSVQ 209 >gi|87123676|ref|ZP_01079526.1| possible DNA-binding response regulator [Synechococcus sp. RS9917] gi|86168245|gb|EAQ69502.1| possible DNA-binding response regulator [Synechococcus sp. RS9917] Length = 261 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G +++EIA+ L +S+ TV +++ S KL A +R A+ A Sbjct: 181 PLAELSLREEDVLRGLCRGMSNQEIADALVVSIDTVKSHVSSLLRKLPANDRTHAVVVAF 240 Query: 230 RFGYI 234 R G + Sbjct: 241 REGLV 245 >gi|83951937|ref|ZP_00960669.1| DNA-binding response regulator, LuxR family protein [Roseovarius nubinhibens ISM] gi|83836943|gb|EAP76240.1| DNA-binding response regulator, LuxR family protein [Roseovarius nubinhibens ISM] Length = 218 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G +++++A L +SV TV + + KL + A+ Sbjct: 149 EQLTNREQTILLQLAQGRSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEH 208 Query: 232 GYI 234 G + Sbjct: 209 GVL 211 >gi|146277025|ref|YP_001167184.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555266|gb|ABP69879.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 247 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + + I + + + + + +LTER+ + G +++ IA +L Sbjct: 146 RLASFDGIFLPTASLTALRGALPDREESHMAVNEHLTERQRAVCDALRRGKSNKIIAGEL 205 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L TV ++ + KL A NR +A K Sbjct: 206 NLCESTVKVHIRNIMKKLGAKNRTEAAFK 234 >gi|326330507|ref|ZP_08196815.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325951782|gb|EGD43814.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 226 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + H A T ++R + LTERE L L G G ++ EIAE Sbjct: 133 APSTTRRLLEHFAASAPSTSTPAAAEQRLAV---LTEREREVLTLVGRGLSNTEIAETFV 189 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV ++G K + +R+Q + A G + Sbjct: 190 VAEATVKTHVGRLLAKTGSRDRVQLVVLAYETGLV 224 >gi|325277459|ref|ZP_08143066.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097402|gb|EGB95641.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 82 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + A LT RE L G +S EI + L TVN ++ + K D Sbjct: 3 DNARHSQHPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILACKESTVNFHVSNILRKFD 62 Query: 218 AVNRIQAIAKAIRFGYI 234 R+ A+ KAIR+G + Sbjct: 63 VPTRVAAVIKAIRYGML 79 >gi|225873102|ref|YP_002754561.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794212|gb|ACO34302.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 237 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + D ++ LT RE + +G ++ +IA++ LS TV +L + K Sbjct: 155 ALHDLMQKAATPERKTYGLTPREMEVVGCIVEGCSNRDIAKQFTLSEETVKRHLSNIFDK 214 Query: 216 LDAVNRIQAIAKAIRFGYI 234 R++ AI + Sbjct: 215 TGVSTRLELAMFAIAHHLV 233 >gi|255621530|ref|XP_002540217.1| Transcriptional regulatory protein uhpA, putative [Ricinus communis] gi|223498115|gb|EEF22167.1| Transcriptional regulatory protein uhpA, putative [Ricinus communis] Length = 179 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + LT+RE L +G ++++IA +L LSV TV + + KL+ Sbjct: 99 AALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLN 158 Query: 218 AVNRIQAIAKAIR 230 + + I A+ Sbjct: 159 IDGQAELIKFAVE 171 >gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 201 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 36/75 (48%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + L+ERE L + G TS EIA LGLS TV+ ++ +A KL Sbjct: 125 ARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVA 184 Query: 220 NRIQAIAKAIRFGYI 234 RI+A+ +A G I Sbjct: 185 TRIEAVVRASSSGII 199 >gi|82779201|ref|YP_405550.1| DNA-binding transcriptional activator UhpA [Shigella dysenteriae Sd197] gi|309784293|ref|ZP_07678932.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617] gi|81243349|gb|ABB64059.1| response regulator, positive activator of uhpT transcription [Shigella dysenteriae Sd197] gi|308927800|gb|EFP73268.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617] Length = 196 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I+ H + D K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIVAVHTVATGGCYLTPDI--AIKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|94313908|ref|YP_587117.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357760|gb|ABF11848.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 237 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A L+ RE+ L L GYT EIA L +SV+TV A++ + KL +R +A+ + Sbjct: 168 PEAVVALSARESEILDLVARGYTYAEIARHLSISVNTVAAHIRNIYGKLAVNSRSEAVFE 227 Query: 228 AIRFGYI 234 A + G + Sbjct: 228 AHKLGLL 234 >gi|323492083|ref|ZP_08097245.1| transcriptional regulator LuxR [Vibrio brasiliensis LMG 20546] gi|323313644|gb|EGA66746.1| transcriptional regulator LuxR [Vibrio brasiliensis LMG 20546] Length = 211 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ + Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207 >gi|229819768|ref|YP_002881294.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565681|gb|ACQ79532.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 967 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 39/77 (50%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + R + LT+RE L+L DG ++ +I E+L +S TV+ ++ + KL Sbjct: 887 RARLAVPGVRLETSGVLTDRERDVLRLVADGLSNRQIGERLYISPKTVSVHISNLLAKLG 946 Query: 218 AVNRIQAIAKAIRFGYI 234 R +A+ A R G + Sbjct: 947 VARRAEAVDVAHRRGLL 963 >gi|159037407|ref|YP_001536660.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916242|gb|ABV97669.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 230 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 37/121 (30%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + + V + E + A Sbjct: 106 LRAGASGFLLKNGTPEALVAAIRVVARGDGLIAPELTRRVIAAFAGPGGEPTTTAVALPE 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G + EIA L L TV ++ KL +R+QA+ A G Sbjct: 166 LTPREHEVLVLVASGANNAEIAAALRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGV 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|62182110|ref|YP_218527.1| putative transcriptional regulator (LuxR/UhpA familiy) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129743|gb|AAX67446.1| putative transcriptional regulator (LuxR/UhpA familiy) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716598|gb|EFZ08169.1| Putative HTH-type transcriptional regulator yhjB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 185 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 87 PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 146 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 147 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 180 >gi|324997346|ref|ZP_08118458.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 222 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 6/90 (6%) Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + L + L+ RE L+L GY + EIA+ L L+ T Sbjct: 125 LISPAITERLLRAVHGVPAPPDDGAPLQELSGRELEVLRLLAAGYANREIAQVLVLAEGT 184 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ + +KL +R +A+ +A+ G + Sbjct: 185 VKNHVSNVLLKLGTRDRTRAVLRALHHGLL 214 >gi|323345346|ref|ZP_08085569.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323093460|gb|EFZ36038.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 203 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 6/101 (5%) Query: 140 MLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + +++ L +++ + LT RE L L G+ ++E Sbjct: 98 VPEEQLVRSVLMLVQYAHVGGKRLPAEPKKMQEKMLRTKILTGREIEVLSLIVQGFINKE 157 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA +L +S+ TV + + KL + A+ GY+ Sbjct: 158 IAGRLNISITTVITHRKNIMEKLGMKSVSALTIYAVMHGYV 198 >gi|300723547|ref|YP_003712852.1| response regulator in two-component regulatory system with NarQ [Xenorhabdus nematophila ATCC 19061] gi|297630069|emb|CBJ90706.1| response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression [Xenorhabdus nematophila ATCC 19061] Length = 211 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I+ H + + +L LT+RE L+ +G T++EIA+ L +S TV Sbjct: 121 IDGHAVFSEKVHQYLSTRHLYIDPLSKLTKRELDVLKEISEGMTNKEIADFLFISEETVK 180 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231 + + KL + +R++A ++ Sbjct: 181 VHTRNLLKKLKSRSRLEATIIYLKH 205 >gi|260174355|ref|ZP_05760767.1| LuxR family transcriptional regulator [Bacteroides sp. D2] gi|315922623|ref|ZP_07918863.1| luxR family transcriptional regulator [Bacteroides sp. D2] gi|313696498|gb|EFS33333.1| luxR family transcriptional regulator [Bacteroides sp. D2] Length = 200 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L G ++EIA+KL +S+ TV + + KL + A+ Sbjct: 133 EILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIMEKLGIKSVSGLTIYAVMN 192 Query: 232 GYI 234 GYI Sbjct: 193 GYI 195 >gi|291300770|ref|YP_003512048.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569990|gb|ADD42955.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 233 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE + L G T++EIA+ + +S T ++ A K A +R Q + A Sbjct: 153 EDLTNREREAVALVAQGLTNDEIADHMAISPMTAKTHINRAMAKTAARDRAQLVVLAYES 212 Query: 232 GYI 234 G + Sbjct: 213 GLV 215 >gi|227523758|ref|ZP_03953807.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227089073|gb|EEI24385.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 209 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 39/66 (59%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++A L+++E L+ A DG T++EIAEKL LS TV YL + KL NR++A+ Sbjct: 143 NAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNM 202 Query: 228 AIRFGY 233 A + Sbjct: 203 AKNNKW 208 >gi|163858791|ref|YP_001633089.1| virulence factors transcription regulator [Bordetella petrii DSM 12804] gi|163262519|emb|CAP44822.1| virulence factors transcription regulator [Bordetella petrii] Length = 208 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ L+++E +Q+ G ++++I + L +S TV+ Y K Sbjct: 129 AHRPVPSSDADAANKIERLSDKEIIVMQMLVRGMSNKDIGDALFISNKTVSTYKTRLMAK 188 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L + ++ + A R + Sbjct: 189 LGVGSLVELVDFARRHQIV 207 >gi|294672981|ref|YP_003573597.1| LuxR family transcriptional regulator [Prevotella ruminicola 23] gi|294473471|gb|ADE82860.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23] Length = 320 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G +++EIA+ L +S++TV + + KL + AI Sbjct: 251 DALSDREKDVIISLVQGMSNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVN 310 Query: 232 GYI 234 G + Sbjct: 311 GLV 313 >gi|56752243|ref|YP_172944.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300669|ref|YP_400877.1| two component LuxR family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687202|dbj|BAD80424.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169550|gb|ABB57890.1| two component transcriptional regulator, LuxR family [Synechococcus elongatus PCC 7942] Length = 235 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 43/111 (38%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 L + + ++ + ++ +L + + A +LT RE S L Sbjct: 123 NLLRRRRETIAAVADTGNPDLAEVARQVAEIRAMLQQKPQLQTQATPLALDLTPREESVL 182 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L G ++EIA +L SV + Y+ K +R + + ++ G Sbjct: 183 KLVAQGLMNKEIARELDTSVRNIEKYVSRLFSKTGTNSRTELVRFSLEHGL 233 >gi|88800064|ref|ZP_01115634.1| DNA-binding response regulator GacA [Reinekea sp. MED297] gi|88777190|gb|EAR08395.1| DNA-binding response regulator GacA [Reinekea sp. MED297] Length = 214 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L F + +L++RE + +EI++KL LS TVN Y KL Sbjct: 134 ALTRFDGSDNPFSDLSDREMQIATMICSCKKVQEISDKLCLSPKTVNTYRYRVFEKLSVS 193 Query: 220 NRIQAIAKAIRFGYI 234 + ++ AIR G + Sbjct: 194 SDVELTHLAIRHGLL 208 >gi|325924567|ref|ZP_08186081.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325544945|gb|EGD16285.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 210 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F+ + +ERE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 135 RARYQFRDQQPPRETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 195 RDRTRAVLKAITLRVI 210 >gi|282859563|ref|ZP_06268668.1| hemerythrin HHE cation binding domain protein [Prevotella bivia JCVIHMP010] gi|282587791|gb|EFB92991.1| hemerythrin HHE cation binding domain protein [Prevotella bivia JCVIHMP010] Length = 318 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 KR L++RE + G +++EIAE L +S +TV + + KL + Sbjct: 243 KRPDRGDTLSDREKDVIVALVQGMSNKEIAEHLCISTNTVITHRRNIAKKLKIHSPAGLT 302 Query: 226 AKAIRFGYI 234 AI + Sbjct: 303 IYAIVNNLV 311 >gi|239816522|ref|YP_002945432.1| LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803099|gb|ACS20166.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 1022 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + C + + S++ L+ RE + L+L G +++ IAE+L +S HTV Sbjct: 928 MASLARRCEALQRELAGAGAMPSASPEGLSRRELAVLRLLCAGCSNQAIAERLFISPHTV 987 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 ++ K D +R +A A A R Sbjct: 988 AHHVRHILSKTDCRSRTEAAAWAHRH 1013 >gi|227364555|ref|ZP_03848616.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325682330|ref|ZP_08161847.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|227070392|gb|EEI08754.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324978169|gb|EGC15119.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 223 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GYT++EIA K+ +S TV A+ KL+ + + + A++ Sbjct: 160 ALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHR 219 Query: 233 YI 234 + Sbjct: 220 LV 221 >gi|224026499|ref|ZP_03644865.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM 18228] gi|224019735|gb|EEF77733.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM 18228] Length = 194 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 141 LANEVIIEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 L + +++A + + ++ L+ RE L L G ++EIA+KL Sbjct: 95 LPQDQLVQAIMQLRKYGHSMHPHPSTQQQDTEHELSPREIEVLVLITKGLINKEIADKLN 154 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S+ TV ++ + T KL + A+ GYI Sbjct: 155 ISLTTVISHRKNITEKLGIKSVSGLAIYAVMRGYI 189 >gi|163839729|ref|YP_001624134.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953205|gb|ABY22720.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 209 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA---ARNLTERE 178 GYV + ++ V A G ++ L+ F L+ RE Sbjct: 94 RAGARGYVTKAASGAEISAAVRTAASGDAVFSPRLAGFVLDAFGGAVPVDDELDRLSARE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L GY+ +E A++L +SV TV ++ + KL +R + A + Sbjct: 154 REVMRLIARGYSYKETAKELFISVKTVETHVSAVLRKLQLSSRHELTRWAANRRLL 209 >gi|157374068|ref|YP_001472668.1| two component LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157316442|gb|ABV35540.1| two component transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 209 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153 L + + V ++ ++++E H Sbjct: 69 LNGLRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKNAMQGHRVI 128 Query: 154 YQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + DFL K + NLT RE LQ +G ++ I+E L +S TV ++ Sbjct: 129 SESVEDFLYELKDAAEEEEWLNNLTPRELQILQQVAEGKSNRVISELLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|17987890|ref|NP_540524.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M] gi|23501222|ref|NP_697349.1| LuxR family DNA-binding response regulator [Brucella suis 1330] gi|62289309|ref|YP_221102.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699239|ref|YP_413813.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|161618298|ref|YP_001592185.1| two component LuxR family transcriptional regulator [Brucella canis ATCC 23365] gi|163842602|ref|YP_001627006.1| two component LuxR family transcriptional regulator [Brucella suis ATCC 23445] gi|189023562|ref|YP_001934330.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225626842|ref|ZP_03784881.1| glycerol metabolism activator [Brucella ceti str. Cudo] gi|225851861|ref|YP_002732094.1| LuxR family two component transcriptional regulator [Brucella melitensis ATCC 23457] gi|237814800|ref|ZP_04593798.1| glycerol metabolism activator [Brucella abortus str. 2308 A] gi|254688629|ref|ZP_05151883.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 6 str. 870] gi|254696752|ref|ZP_05158580.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701135|ref|ZP_05162963.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 5 str. 513] gi|254707944|ref|ZP_05169772.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M163/99/10] gi|254709478|ref|ZP_05171289.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis B2/94] gi|254718509|ref|ZP_05180320.1| two component transcriptional regulator, LuxR family protein [Brucella sp. 83/13] gi|254729661|ref|ZP_05188239.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 4 str. 292] gi|256030972|ref|ZP_05444586.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M292/94/1] gi|256044043|ref|ZP_05446954.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060463|ref|ZP_05450634.1| two component transcriptional regulator, LuxR family protein [Brucella neotomae 5K33] gi|256112839|ref|ZP_05453760.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 3 str. Ether] gi|256159018|ref|ZP_05456855.1| two component transcriptional regulator, LuxR family protein [Brucella ceti M490/95/1] gi|256254376|ref|ZP_05459912.1| two component transcriptional regulator, LuxR family protein [Brucella ceti B1/94] gi|256256876|ref|ZP_05462412.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 9 str. C68] gi|256264624|ref|ZP_05467156.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|256368775|ref|YP_003106281.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260168107|ref|ZP_05754918.1| DNA-binding response regulator, LuxR family protein [Brucella sp. F5/99] gi|260545936|ref|ZP_05821677.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260563402|ref|ZP_05833888.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567065|ref|ZP_05837535.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260754100|ref|ZP_05866448.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757320|ref|ZP_05869668.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761144|ref|ZP_05873487.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883126|ref|ZP_05894740.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261221537|ref|ZP_05935818.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261315435|ref|ZP_05954632.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261317000|ref|ZP_05956197.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261324454|ref|ZP_05963651.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751668|ref|ZP_05995377.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757557|ref|ZP_06001266.1| bacterial regulatory protein [Brucella sp. F5/99] gi|265983478|ref|ZP_06096213.1| two component transcriptional regulator [Brucella sp. 83/13] gi|265988037|ref|ZP_06100594.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990454|ref|ZP_06103011.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994282|ref|ZP_06106839.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265997500|ref|ZP_06110057.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|294851704|ref|ZP_06792377.1| two component LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297247726|ref|ZP_06931444.1| two component LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306838316|ref|ZP_07471162.1| two component LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|306842417|ref|ZP_07475069.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306844955|ref|ZP_07477536.1| two component LuxR family transcriptional regulator [Brucella sp. BO1] gi|17983624|gb|AAL52788.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M] gi|23347103|gb|AAN29264.1| DNA-binding response regulator, LuxR family [Brucella suis 1330] gi|62195441|gb|AAX73741.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82615340|emb|CAJ10301.1| Bacterial regulatory protein, LuxR family:Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161335109|gb|ABX61414.1| two component transcriptional regulator, LuxR family [Brucella canis ATCC 23365] gi|163673325|gb|ABY37436.1| two component transcriptional regulator, LuxR family [Brucella suis ATCC 23445] gi|189019134|gb|ACD71856.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225618499|gb|EEH15542.1| glycerol metabolism activator [Brucella ceti str. Cudo] gi|225640226|gb|ACO00140.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis ATCC 23457] gi|237789637|gb|EEP63847.1| glycerol metabolism activator [Brucella abortus str. 2308 A] gi|255998933|gb|ACU47332.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260097343|gb|EEW81218.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260153418|gb|EEW88510.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156583|gb|EEW91663.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260667638|gb|EEX54578.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671576|gb|EEX58397.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674208|gb|EEX61029.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872654|gb|EEX79723.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260920121|gb|EEX86774.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261296223|gb|EEX99719.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300434|gb|EEY03931.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261304461|gb|EEY07958.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737541|gb|EEY25537.1| bacterial regulatory protein [Brucella sp. F5/99] gi|261741421|gb|EEY29347.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262551968|gb|EEZ07958.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|262765395|gb|EEZ11184.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263001238|gb|EEZ13813.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263094991|gb|EEZ18699.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264660234|gb|EEZ30495.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264662070|gb|EEZ32331.1| two component transcriptional regulator [Brucella sp. 83/13] gi|294820293|gb|EFG37292.1| two component LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297174895|gb|EFH34242.1| two component LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306274587|gb|EFM56376.1| two component LuxR family transcriptional regulator [Brucella sp. BO1] gi|306287439|gb|EFM58916.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306406607|gb|EFM62840.1| two component LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|326408357|gb|ADZ65422.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326538072|gb|ADZ86287.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis M5-90] Length = 213 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA Sbjct: 140 ESLIARLRTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 199 Query: 225 IAKAIRFG 232 + R G Sbjct: 200 VILLSRIG 207 >gi|148544128|ref|YP_001271498.1| two component LuxR family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531162|gb|ABQ83161.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri DSM 20016] Length = 217 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GYT++EIA K+ +S TV A+ KL+ + + + A++ Sbjct: 154 ALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHR 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|15596681|ref|NP_250175.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100918|ref|ZP_01364836.1| hypothetical protein PaerPA_01001948 [Pseudomonas aeruginosa PACS2] gi|116049428|ref|YP_791769.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892642|ref|YP_002441511.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234581|ref|ZP_04927904.1| hypothetical protein PACG_00443 [Pseudomonas aeruginosa C3719] gi|254239833|ref|ZP_04933155.1| hypothetical protein PA2G_00461 [Pseudomonas aeruginosa 2192] gi|9947438|gb|AAG04873.1|AE004577_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115584649|gb|ABJ10664.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166512|gb|EAZ52023.1| hypothetical protein PACG_00443 [Pseudomonas aeruginosa C3719] gi|126193211|gb|EAZ57274.1| hypothetical protein PA2G_00461 [Pseudomonas aeruginosa 2192] gi|218772870|emb|CAW28682.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 268 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 68/226 (30%), Gaps = 23/226 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 + L++ + N + ++ E H + D F Sbjct: 30 LILLLRQHLPFDNALAIFYPANGVPVALEEYDAEPHAGPASMLAY--LNGLYLLDPFYQA 87 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 GL +++ + + + + + F +++ + + + Sbjct: 88 CREGLASGLYRLEEIAPDHFRQSEYYLSYFHDNVLEDEVQFILQVPGQGALSLSLGMQRM 147 Query: 140 MLANE--VIIEAHGACYQVITDFLELFKKRSSAARN-------------------LTERE 178 E ++ ++ + +R A L+ERE Sbjct: 148 FADEECGMLGLLSSWVLALMQQHWQQRSQRLLPAAPQEEMATQIRDALSHFGASVLSERE 207 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L GY+S+ +AE+L +S T+ + KLD ++ + Sbjct: 208 LEIARLILRGYSSKAMAERLAISPETIKVHRRHLYAKLDISSQPEL 253 >gi|320534062|ref|ZP_08034606.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133731|gb|EFW26135.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 251 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT RE + L L G ++ I E+L ++ TV +++ + K NR++ + Sbjct: 181 PSGPYEALTGREDAVLALVCQGLSNARIGERLHVAESTVKSHVKTILGKTGCRNRVELVI 240 Query: 227 KAIRFGYI 234 A+ G + Sbjct: 241 YALTTGLV 248 >gi|317130513|ref|YP_004096795.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475461|gb|ADU32064.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 155 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L++RE + G + I E LG+S HTV ++ + KL+ +R+Q I Sbjct: 97 DILSQREKEVIIHICKGLDNASIGESLGISPHTVKNHISNIYQKLNVKDRLQLI 150 >gi|228995222|ref|ZP_04154940.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] gi|228764519|gb|EEM13350.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] Length = 570 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G + IA KL LS TV Y + KL NR +A+ KA G Sbjct: 508 GLTKRELEVLNLLSQGSRYKTIASKLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDTG 567 Query: 233 YI 234 + Sbjct: 568 LL 569 >gi|13473938|ref|NP_105506.1| two-component system response regulator [Mesorhizobium loti MAFF303099] gi|14024689|dbj|BAB51292.1| two-component system response regulator [Mesorhizobium loti MAFF303099] Length = 215 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANE---VIIEAHGACYQVITDFLE--LFKKRSSAARNLTERE 178 L GY++ + L +I +V L+ L + +RNLT RE Sbjct: 98 LRAGARGYLLKIEDDSELVAAVAALIRGQTYFSPRVSECVLQDFLDGQSDVTSRNLTNRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ +G +++ IA +LG+SV TV+++ +A KL N + + AIR Sbjct: 158 REVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKLGLRNAVDLVRYAIRNKL 212 >gi|84684209|ref|ZP_01012111.1| two component transcriptional regulator, LuxR [Maritimibacter alkaliphilus HTCC2654] gi|84667962|gb|EAQ14430.1| two component transcriptional regulator, LuxR [Rhodobacterales bacterium HTCC2654] Length = 177 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 S A+ L++RE L G ++EIA + TV ++ + KLDA NR A Sbjct: 107 PDPSVVAQKLSDRELQVLAGVCKGLQNKEIAHDFNIKEVTVKMHVRAVIRKLDAKNRTHA 166 Query: 225 IAKAIRFGYI 234 A G + Sbjct: 167 AMIARDLGLV 176 >gi|117921851|ref|YP_871043.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117614183|gb|ABK49637.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 221 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 12/159 (7%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL--GFHKNGYVIFT 135 ++ +P++ + + L L + + +R + ++ T Sbjct: 56 AALDNKGIPLLASRLVPHVPV----ALYQVERNSLDQESAMLLGIRGLLFADQRMDLMLT 111 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGY 189 M+A+E+ + +L + A LT RE + +Q G Sbjct: 112 GLRKMVADELWYDRTLLSKMFRRVVQKLDGQNEMPADTVAMLQALTSRERTIIQFVSSGA 171 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 172 RNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|315618207|gb|EFU98797.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 3431] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L S K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYSLFKKIAVKNRTQAVSWA 210 >gi|313111442|ref|ZP_07797244.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310883746|gb|EFQ42340.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 204 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTER 177 + G + F S+ L+ ++ + L + +L++R Sbjct: 88 RCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDR 147 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + LQ +G T++ IA++L LS TV+ Y +KL+A + I A R I Sbjct: 148 EMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI 204 >gi|308176496|ref|YP_003915902.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743959|emb|CBT74931.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 220 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ L + LT RE L +G ++ ++A++LG+ TV ++ Sbjct: 128 RILARALAPEPGTAKLPDGLTGREREVLDGLAEGLSNPQLAQRLGIGQSTVKTHVSQVLA 187 Query: 215 KLDAVNRIQAIAKAI 229 KL R+QA A Sbjct: 188 KLGVSTRLQAAKIAY 202 >gi|282854807|ref|ZP_06264141.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282581953|gb|EFB87336.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314967298|gb|EFT11397.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981731|gb|EFT25824.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092496|gb|EFT64472.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] Length = 224 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|255320985|ref|ZP_05362158.1| response regulator UvrY [Acinetobacter radioresistens SK82] gi|262379925|ref|ZP_06073080.1| response regulator [Acinetobacter radioresistens SH164] gi|255301949|gb|EET81193.1| response regulator UvrY [Acinetobacter radioresistens SK82] gi|262298119|gb|EEY86033.1| response regulator [Acinetobacter radioresistens SH164] Length = 211 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S L+ERE + + +++EIA+KL +SV TVN Y KLD + + Sbjct: 138 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLDIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|149375829|ref|ZP_01893597.1| putative glycerol regulatory protein [Marinobacter algicola DG893] gi|149359954|gb|EDM48410.1| putative glycerol regulatory protein [Marinobacter algicola DG893] Length = 257 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 157 ITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 S +LT R+ L+ G ++++IA L ++ TV A++ + K Sbjct: 174 HRRSRHEDNPISPELLNSLTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRK 233 Query: 216 LDAVNRIQAIAKA 228 L NR+QAI A Sbjct: 234 LGVHNRVQAILSA 246 >gi|56415510|ref|YP_152585.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364436|ref|YP_002144073.1| hypothetical protein SSPA3234 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129767|gb|AAV79273.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095913|emb|CAR61490.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 200 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 102 PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 162 IGRALNISTRTVKAHLESLYRRLDVKNRTQAAMM 195 >gi|330822272|ref|YP_004362493.1| hypothetical protein bgla_1p0580 [Burkholderia gladioli BSR3] gi|327374109|gb|AEA65463.1| hypothetical protein bgla_1p0580 [Burkholderia gladioli BSR3] Length = 474 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 69/245 (28%), Gaps = 19/245 (7%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDLD 60 + T S EL + + R+ A F + P + L + D Sbjct: 107 DPLQTLAAVRSEAELRRTISELTTRLGAVAFCAMYVNFDPQTRQP---RTHVALVDGDRG 163 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + D L H + PI + ++ S + F Sbjct: 164 FFQLYVQRRWFAIDALLTHALASNRPIYSSTTGLLENLQGSWYDMGVAARQHGLCSWAGF 223 Query: 121 PVRLG-FHKNGYVIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARN 173 P H G + S L E + G ++ L + R A + Sbjct: 224 PTHRPGTHDFGVLYLASPVLPADGGERPFQESAMYLRGLAAEIFDWQLAARRARDIEACD 283 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT----VKLDAVNRIQAIAKAI 229 R+ L+ G T+++IA L LS V L K + N A A Sbjct: 284 FNSRDLRVLKAVAAGNTAKDIASVLELSERDV---LKRIFPEVVAKSGSRNIRDAARYAA 340 Query: 230 RFGYI 234 G + Sbjct: 341 DRGLL 345 >gi|326334307|ref|ZP_08200525.1| putative two-component response regulator [Nocardioidaceae bacterium Broad-1] gi|325947916|gb|EGD40038.1| putative two-component response regulator [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 6/107 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 ++ +++ L + E R AA LT RE L+L Sbjct: 96 GARAWISMSADAAELVRSIER------TAAGEPINEPPSDRQGAAAGLTVREIEVLKLIT 149 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA++L +S +T+ +++ A K+ R QA++ AI G Sbjct: 150 QGLPNQEIAKRLAMSGNTLKSHIRRAYRKIHVTTRSQAVSWAIAHGL 196 >gi|300782900|ref|YP_003763191.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792414|gb|ADJ42789.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 42/96 (43%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A + A ++I ++ + LT RE + L G ++EEIA ++ Sbjct: 118 RVAARGDALLAPSITRKLIDRYVTQPLVPGAGLAELTNREREAVSLVARGLSNEEIAGRM 177 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S T ++ A +KL A +R Q + A G + Sbjct: 178 VISPLTAKTHVNRAMMKLHARDRAQLVVFAYESGLV 213 >gi|238752346|ref|ZP_04613824.1| hypothetical protein yrohd0001_8030 [Yersinia rohdei ATCC 43380] gi|238709387|gb|EEQ01627.1| hypothetical protein yrohd0001_8030 [Yersinia rohdei ATCC 43380] Length = 210 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + IAE+L +S TV + + KLD + I + R G Sbjct: 149 LTPRERQILKLITEGSCNRIIAEQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208 >gi|218508735|ref|ZP_03506613.1| two-component nodulation response regulator protein [Rhizobium etli Brasil 5] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTE 176 P+ + K G + F ++ L + +++A A + + L + S +LT Sbjct: 86 IPISVRAMKAGAIEFLTK--PLREQELLDAAYAGIERDCARRQEVALIAELRSRYDSLTP 143 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + L G +++IA ++GLS TV + G K+ A + + + A G Sbjct: 144 REREIMNLVVAGSVNKQIAAQVGLSEVTVKVHRGHVMQKMQARSLVDLVRMADGLGL 200 >gi|115372616|ref|ZP_01459923.1| two-component system regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|310823849|ref|YP_003956207.1| two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|115370337|gb|EAU69265.1| two-component system regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|309396921|gb|ADO74380.1| Two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] Length = 213 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE ++L G ++ EIA LG + TV + KL +R +A+ +A+ Sbjct: 151 EGLTRRELEVMRLIARGLSNREIATVLGTAEGTVKNQTSNILAKLGVRDRTRAVLRAMEL 210 Query: 232 G 232 G Sbjct: 211 G 211 >gi|86360140|ref|YP_472029.1| two-component nodulation response regulator protein [Rhizobium etli CFN 42] gi|86284242|gb|ABC93302.1| two-component nodulation response regulator protein [Rhizobium etli CFN 42] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTE 176 P+ + K G + F ++ L + +++A A + + L + S +LT Sbjct: 86 IPISVRAMKAGAIEFLTK--PLREQELLDAAYAGIERDCARRQEVALIAELRSRYDSLTP 143 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + L G +++IA +GLS TV + G K+ A + + + A G Sbjct: 144 REREIMNLVVAGSVNKQIAAHVGLSEVTVKVHRGHVMQKMQARSLVDLVRMADSLGL 200 >gi|50843473|ref|YP_056700.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|289425764|ref|ZP_06427519.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289427938|ref|ZP_06429642.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|50841075|gb|AAT83742.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|289153870|gb|EFD02576.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289158821|gb|EFD07021.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|313763833|gb|EFS35197.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313793774|gb|EFS41805.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803088|gb|EFS44296.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808301|gb|EFS46772.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313813848|gb|EFS51562.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313817004|gb|EFS54718.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818081|gb|EFS55795.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820939|gb|EFS58653.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823990|gb|EFS61704.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827075|gb|EFS64789.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829809|gb|EFS67523.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313839286|gb|EFS77000.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916571|gb|EFS80402.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918956|gb|EFS82787.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920977|gb|EFS84808.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926967|gb|EFS90798.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932382|gb|EFS96213.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956691|gb|EFT00943.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959601|gb|EFT03703.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961786|gb|EFT05887.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964770|gb|EFT08870.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968723|gb|EFT12821.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314979700|gb|EFT23794.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314988252|gb|EFT32343.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990339|gb|EFT34430.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079262|gb|EFT51265.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082275|gb|EFT54251.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083754|gb|EFT55730.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087395|gb|EFT59371.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089812|gb|EFT61788.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315100153|gb|EFT72129.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102475|gb|EFT74451.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315107818|gb|EFT79794.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327326525|gb|EGE68313.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327335184|gb|EGE76894.1| two-component system response regulator [Propionibacterium acnes HL097PA1] gi|327449654|gb|EGE96308.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455799|gb|EGF02454.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456107|gb|EGF02762.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327457944|gb|EGF04599.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757114|gb|EGF70730.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757308|gb|EGF70924.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757492|gb|EGF71108.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|332676424|gb|AEE73240.1| putative two-component response regulator [Propionibacterium acnes 266] Length = 224 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|17233235|ref|NP_490325.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17135757|dbj|BAB78303.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 218 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ E + L G++++ IAE+L ++ TV ++ KLD +R+ A+ A + Sbjct: 148 DHLSNTEMQIISLMAAGFSNKHIAEQLFITQSTVKGHINKIFAKLDVADRVNALIVASKL 207 Query: 232 GYI 234 GYI Sbjct: 208 GYI 210 >gi|21223862|ref|NP_629641.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|4467257|emb|CAB37582.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 1091 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 51/167 (30%), Gaps = 11/167 (6%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE----------GGLLPFAGIAFPVRLGF 126 L P +W R+ GG A +RL Sbjct: 914 LHRARGRDTPRLWSEAVTAFECLERPYDLARVRYRLADALLAAGGDDERARATELLRLAR 973 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 ++ + A + + A LT RE L+L Sbjct: 974 TVADHLG-ARPLSDAVAVLGRRARLTLGRAAGPVPASGPADPADALGLTGRERDVLRLVS 1032 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG T+ +IAE+L +S T + ++ + KL R +A A A R Sbjct: 1033 DGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRLAL 1079 >gi|84497395|ref|ZP_00996217.1| putative LuxR-family transcriptional regulator [Janibacter sp. HTCC2649] gi|84382283|gb|EAP98165.1| putative LuxR-family transcriptional regulator [Janibacter sp. HTCC2649] Length = 972 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 8/154 (5%) Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 W++ E + + + G + + + S + Sbjct: 818 WRTNDVEPPTTEAMVQAWQESVAAFERYGHVYETARSRARLAAALRASGDAAGSRHEAEL 877 Query: 149 AHGACYQV--------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 A ++ + D +++ +LT RE L+L G ++ ++ ++L + Sbjct: 878 ARAVATRLGAAPLLAELDDLTAPSAATAASPDHLTRREQEVLELVARGLSNGQVGQQLFI 937 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S T + ++ KL A +R QA A A G + Sbjct: 938 STKTASVHVSRILAKLGAASRTQAAAIARDRGLV 971 >gi|328885722|emb|CCA58961.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 221 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R +TERE L+L +G++S+EI + L +S TV + + KL +R Sbjct: 147 RARTGGPIPDRAITEREEEILKLVAEGHSSKEIGDLLVISPKTVERHRANLLQKLGLRDR 206 Query: 222 IQAIAKAIRFGYI 234 ++ AIR G I Sbjct: 207 LELTRYAIRVGLI 219 >gi|307308356|ref|ZP_07588061.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306901157|gb|EFN31764.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 213 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE L G +++IA+ LG S TV A+ + KL + + ++ A R G Sbjct: 143 NLTPREFEVFGLIVRGKLNKQIAQALGTSERTVKAHRHNLMEKLGTRSLAETVSIAERLG 202 Query: 233 YI 234 + Sbjct: 203 LV 204 >gi|303238745|ref|ZP_07325277.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593624|gb|EFL63340.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT+RE S ++L DG +++EIA + ++ +V + + KL+ +R Q A++ Sbjct: 155 NLTDRELSIIKLIVDGKSNKEIALSIFITEGSVKNIITNILEKLNLKDRTQLAVFAVKNN 214 Query: 233 YI 234 + Sbjct: 215 IV 216 >gi|255037324|ref|YP_003087945.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254950080|gb|ACT94780.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + S L++RE L+L Y++ +IA +L +S TV + + KL N + Sbjct: 145 MQEPAPSTRDFLSKREIEILRLVASEYSTNKIASELCISDKTVETHRRNLFQKLGVRNSV 204 Query: 223 QAIAKAIRFGYI 234 A+R G + Sbjct: 205 GLTKIAVRMGVV 216 >gi|237747660|ref|ZP_04578140.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] gi|229379022|gb|EEO29113.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] Length = 206 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAE 196 ++ H + + + + S A LT RE +L G +++ +A+ Sbjct: 111 PALMARLHESAVHTNPESQKNEETDSFTAAETNPLSCLTRRELEIARLVNKGCSNKAVAK 170 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L ++ TV A+L S KLD +R+Q + Sbjct: 171 ELDIAERTVKAHLSSIFEKLDVKDRLQLVVF 201 >gi|256392927|ref|YP_003114491.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359153|gb|ACU72650.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 236 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S LT+RE L DG ++ +IA +L LS TV ++ A KL A +R Q + Sbjct: 161 HPSPLLTTLTDRERELTALVADGMSNTDIARQLTLSPLTVKTHVNHAMTKLGARDRAQLV 220 Query: 226 AKAIRFGY 233 A + G Sbjct: 221 VLAYQTGL 228 >gi|24114788|ref|NP_709298.1| putative regulator [Shigella flexneri 2a str. 301] gi|30065198|ref|NP_839369.1| putative regulator [Shigella flexneri 2a str. 2457T] gi|110807384|ref|YP_690904.1| putative regulator [Shigella flexneri 5 str. 8401] gi|24054012|gb|AAN45005.1| putative regulator [Shigella flexneri 2a str. 301] gi|30043460|gb|AAP19180.1| putative regulator [Shigella flexneri 2a str. 2457T] gi|110616932|gb|ABF05599.1| putative regulator [Shigella flexneri 5 str. 8401] gi|281602877|gb|ADA75861.1| putative HTH-type transcriptional regulator yhjB [Shigella flexneri 2002017] gi|313647630|gb|EFS12080.1| bacterial regulatory s, luxR family protein [Shigella flexneri 2a str. 2457T] gi|332750052|gb|EGJ80464.1| transcriptional regulator, LuxR family [Shigella flexneri K-671] gi|332750208|gb|EGJ80619.1| transcriptional regulator, LuxR family [Shigella flexneri 4343-70] gi|332751272|gb|EGJ81675.1| transcriptional regulator, LuxR family [Shigella flexneri 2747-71] gi|332997514|gb|EGK17130.1| transcriptional regulator, LuxR family [Shigella flexneri K-218] gi|333012477|gb|EGK31858.1| transcriptional regulator, LuxR family [Shigella flexneri K-304] Length = 200 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|89092871|ref|ZP_01165823.1| probable transcriptional regulator [Oceanospirillum sp. MED92] gi|89082896|gb|EAR62116.1| probable transcriptional regulator [Oceanospirillum sp. MED92] Length = 222 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 158 TDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + +LT R+ L+ G ++++IA L ++ TV A++ + K Sbjct: 139 RRSQRKDDNQIPPELLSSLTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRK 198 Query: 216 LDAVNRIQAIAKA 228 L NRIQA+ A Sbjct: 199 LGVHNRIQAVLSA 211 >gi|255525021|ref|ZP_05391967.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296187376|ref|ZP_06855771.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255511277|gb|EET87571.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296047898|gb|EFG87337.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 220 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE +L +G ++++I + L LS TV Y+ KL +R + Sbjct: 158 DLLTKREMDVAKLVAEGKSNKDICKVLFLSEGTVKNYVTKIFEKLQLNSRTELAVF 213 >gi|222870082|gb|EEF07213.1| predicted protein [Populus trichocarpa] Length = 326 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GYV+ + L + G + + + S LT RE L Sbjct: 212 RAGARGYVLKDAPADELLAAIQAVLAGRVFYSARIARGMAAQAVSPLDALTPRERDILHG 271 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RFGY 233 G G +++IA +LG+SV TV + + KL R + + A+ + G Sbjct: 272 IGRGQANKDIAVQLGVSVRTVETHRLNLKRKLGIEGRAELVKYAVQQLGL 321 >gi|163802887|ref|ZP_02196775.1| excinuclease ABC subunit A [Vibrio sp. AND4] gi|159173294|gb|EDP58120.1| excinuclease ABC subunit A [Vibrio sp. AND4] Length = 214 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +LT RE L+ G ++ ++AE L +S T+ ++L K+ NR+ Sbjct: 143 ISTHTAPATVDLTIRELQVLRCLQAGTSNIQMAEDLYVSESTIKSHLSQIFKKISVKNRV 202 Query: 223 QAIAKA 228 QAIA A Sbjct: 203 QAIAWA 208 >gi|326381846|ref|ZP_08203539.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL B-59395] gi|326199272|gb|EGD56453.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL B-59395] Length = 210 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 39/75 (52%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +L + + +LT RE + L G T+ EIA++L +S TV ++L KLD Sbjct: 135 AAKLLTRVTDTRPSLTARELEVVVLLDAGLTNREIAKRLFISEATVKSHLVHIFDKLDVT 194 Query: 220 NRIQAIAKAIRFGYI 234 +R + +A A + G I Sbjct: 195 SRSKVVATARQRGLI 209 >gi|315109607|gb|EFT81583.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] Length = 224 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|291300583|ref|YP_003511861.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569803|gb|ADD42768.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 222 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + L + + L+++E L+L G G T+ +IA ++ L+ TV Y+ K Sbjct: 136 ALMNRLRREQSQVDPLCELSQQERKVLELIGLGLTNRQIAGRMFLAEKTVKNYVSHLLAK 195 Query: 216 LDAVNRIQAIAKAIR 230 L +R QA A Sbjct: 196 LGMTSRTQAAVLATE 210 >gi|302549920|ref|ZP_07302262.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467538|gb|EFL30631.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G Sbjct: 156 QLTEREAEVLRLMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215 Query: 233 YI 234 ++ Sbjct: 216 FV 217 >gi|91975978|ref|YP_568637.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91682434|gb|ABE38736.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 209 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F + ++ E I+A+ V ++ LT RE L+L G T++E Sbjct: 110 FRGKEIVTRVEEAIDAYSR-RSVSGKAVKAPSYIFPGKEPLTLREREVLELFASGNTNKE 168 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LG+S T+ + + KL A N + Sbjct: 169 AGRQLGISPRTIEYHRANIMKKLGARNATDLVRI 202 >gi|325104166|ref|YP_004273820.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] gi|324973014|gb|ADY51998.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] Length = 217 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L +G T+ EIA KL LS TV + + K N I A++ G Sbjct: 156 ELSDRELEVLGLISEGLTNIEIANKLFLSKRTVEGHRQNLINKTKVKNSAALIKYAVKNG 215 Query: 233 YI 234 I Sbjct: 216 LI 217 >gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 214 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 10/138 (7%) Query: 97 VIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155 + + +L R++G L P + + ++ + A + Sbjct: 80 FLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKIEAQLARADRIRFQIELALQNAHPR 139 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + L LT E GYT+++I L +S TV +L S K Sbjct: 140 LGREKSPL---------PLTPAEEKVFWEVIQGYTNKKIGTHLFISPRTVQTHLSSILSK 190 Query: 216 LDAVNRIQAIAKAIRFGY 233 L+ NR Q I A GY Sbjct: 191 LELENRSQLIRYAFENGY 208 >gi|152994713|ref|YP_001339548.1| two component LuxR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835637|gb|ABR69613.1| two component transcriptional regulator, LuxR family [Marinomonas sp. MWYL1] Length = 213 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +LT+RE + L+ G +++EIA+ L +SV TV + + KLD I A+ Sbjct: 149 SDDLTKREVAVLKALAAGLSNKEIAQLLNISVRTVETHRQNLKNKLDIHTSAGLIKYALA 208 Query: 231 FGYI 234 I Sbjct: 209 NQLI 212 >gi|114777603|ref|ZP_01452584.1| regulatory protein, LuxR:Response regulator receiver [Mariprofundus ferrooxydans PV-1] gi|114552074|gb|EAU54591.1| regulatory protein, LuxR:Response regulator receiver [Mariprofundus ferrooxydans PV-1] Length = 217 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 14/146 (9%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 ++ R+ + + G + + + A ++V+ Sbjct: 69 EVMRRILLAHPEARILMLSMHSGMVAERAMQMGARGFVCKRSGARLLISAIHEVMAGRRY 128 Query: 163 LF--------------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 L + +LT RE L DG + +IA L LS TV ++ Sbjct: 129 LDDETGVQLPLLHSASETLKPLPSSLTRRELEVCLLLTDGRSVSDIAAALHLSEKTVYSH 188 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL + + A R G + Sbjct: 189 RQHIMEKLGVATMAELVQVATRMGIL 214 >gi|330873242|gb|EGH07391.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 910 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 846 SDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 905 Query: 231 FGYI 234 G + Sbjct: 906 LGLL 909 >gi|322436726|ref|YP_004218938.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321164453|gb|ADW70158.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++ LT+RE L+L DG +++IA L ++ TVN ++ + + KL Sbjct: 132 HEFAARMAER--FGDEKLTDRELDVLKLIRDGRRNKQIASDLKIAEATVNFHIKNISQKL 189 Query: 217 DAVNRIQAIAKAIRFGYI 234 A +R A+ A+R G + Sbjct: 190 QANDRTHAVMIALRRGLL 207 >gi|254384266|ref|ZP_04999609.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343154|gb|EDX24120.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTE 176 +R G ++ A ++ E + L + LTE Sbjct: 96 LRAGADGFLLKRSRPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNRGARAVLERAALTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L+L G T+ EIA +L + TV +++ + KL A +R QA+ A G++ Sbjct: 156 REEAVLRLMARGLTNVEIASELIVGTETVKSHVSAILAKLGARDRTQAVIMAYESGFV 213 >gi|228953499|ref|ZP_04115544.1| Two-component protein Kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806238|gb|EEM52812.1| Two-component protein Kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 500 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 413 QGMSHKIFEKFDEKKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 472 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 473 YASTAYTKLGVSNKEEAVQKALEIGII 499 >gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] Length = 273 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + F + ++ + K S T RE S LQL +G Sbjct: 169 LLAEAARFADADIGQMARQITEIRSLLATGGQAKKPAGSTDLVFTPREASVLQLVAEGLM 228 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA +L S+ V Y+ +K +R + + A+ G + Sbjct: 229 NKEIARRLETSIRNVEKYVSRLFIKTGTASRTELVRYALEHGLV 272 >gi|295394806|ref|ZP_06805021.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972402|gb|EFG48262.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 202 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 8/155 (5%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLA 142 + E + + + L + + Sbjct: 49 VDVALFDIEMPGLNGIEATRELHDKGCDTKVLIVTTFGRPGYLQRALAAGAKGFVVKDAP 108 Query: 143 NEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 E + EA Q + L + + LTERE L +A G + IA+ L Sbjct: 109 AEELAEAIRKVHRGEQAVDPSLAIESISLGPS-PLTEREREVLAVAHTGASVRTIADSLF 167 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV +L SA KL NR A +A + G++ Sbjct: 168 LSEGTVRNHLSSAISKLGVDNRSTAAIEAAKRGWL 202 >gi|315504459|ref|YP_004083346.1| transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411078|gb|ADU09195.1| transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 978 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 39/81 (48%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + L LT RE L+L +G+++ IAE+L +S T + ++ Sbjct: 885 AATLARRVGLRGTGRPGPDLLTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRII 944 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KLD NR++A A A R G + Sbjct: 945 AKLDVTNRVEAAALAHRLGLL 965 >gi|227508573|ref|ZP_03938622.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191905|gb|EEI71972.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 209 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 39/66 (59%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++A L+++E L+ A DG T++EIAEKL LS TV YL + KL NR++A+ Sbjct: 143 NAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNM 202 Query: 228 AIRFGY 233 A + Sbjct: 203 AKNNKW 208 >gi|170767047|ref|ZP_02901500.1| transcriptional regulatory protein UhpA [Escherichia albertii TW07627] gi|170124485|gb|EDS93416.1| transcriptional regulatory protein UhpA [Escherichia albertii TW07627] Length = 196 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166 A I V G F S+ E+I H +L K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVA--AGGCYLTPDIAVKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281564|gb|ABR89974.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 213 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +S LT R+ L+L DG + EIA++LG++ TV A++ + L +NR QA Sbjct: 141 DDASLLSRLTPRQMEVLRLMCDGLRNGEIADQLGMTEKTVKAHVSAVLSGLGVLNRTQAT 200 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 201 VVARRAGLL 209 >gi|254291301|ref|ZP_04962095.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|150422757|gb|EDN14710.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] Length = 214 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 RL L G + G++ ++ + + H + + Sbjct: 89 RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPHHVSSQLLHYYRYAFQSH 147 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QVQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 Query: 227 K 227 Sbjct: 208 W 208 >gi|41410415|ref|NP_963251.1| hypothetical protein MAP4317c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399249|gb|AAS06867.1| hypothetical protein MAP_4317c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 218 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKK-RSSAARNLT 175 L G+V+ S L V A +V+T + + R +A LT Sbjct: 97 LRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPRGAAIAELT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G G ++ EIA++L +S TV +++G KLD +R AI A G + Sbjct: 157 TRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215 >gi|226946038|ref|YP_002801111.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter vinelandii DJ] gi|226720965|gb|ACO80136.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter vinelandii DJ] Length = 900 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 7/148 (4%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN-GYVIFTSEFLMLANEVI 146 +W + + ++ L + + + + + E+ Sbjct: 758 LWAIALWQGDERDAAVATLLPALQLGQRENLLCSLTDAGRALLPLLSRCASAEAGSGELA 817 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 ++ D + +L+ERE+ L+L G +++EIA L +SV TV Sbjct: 818 GYLAILRERLGGD------DCAEPPFSLSERESQTLRLVAAGQSNKEIARTLDISVETVK 871 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L + KL +R +A+++A + Sbjct: 872 WHLKNLYGKLQVTSRTRAMSRARELSLL 899 >gi|326789547|ref|YP_004307368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] gi|326540311|gb|ADZ82170.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] Length = 252 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 18/192 (9%) Query: 49 QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS-GQLSVR 107 I N + + + + ++ + Sbjct: 64 SFIFSDDNSVDEYLKHYYHVDYLKY-----VSDFTKKTVTYRDTDILDEDIRKKTEFYRE 118 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV----IIE---AHGACYQVITDF 160 G + G + + I++ H Q Sbjct: 119 FLRPKNIPYGCGIILLKEEKIIGIINLFRSSELGDFSDKDLYILDNLKLHLRNIQYHLCA 178 Query: 161 LELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 E+ K S +L+ERE +QL DG ++ EI EKL +S+ TV + + K Sbjct: 179 KEIEGKESKLDSVCKQYDLSEREGEVVQLVNDGCSNSEIGEKLSISISTVKKHFYNIYNK 238 Query: 216 LDAVNRIQAIAK 227 NR Q + Sbjct: 239 TGVKNRTQLLVL 250 >gi|283836093|ref|ZP_06355834.1| hypothetical protein CIT292_10512 [Citrobacter youngae ATCC 29220] gi|291068280|gb|EFE06389.1| transcriptional regulatory protein UhpA [Citrobacter youngae ATCC 29220] Length = 197 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 12/119 (10%) Query: 118 IAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRS 168 I V G F S+ E+I H +L K + Sbjct: 76 IMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKLAA 132 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE + G +EIA +LGLS TV+ + + KL N ++ + Sbjct: 133 GRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191 >gi|229522252|ref|ZP_04411668.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM 11079-80] gi|229340237|gb|EEO05243.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM 11079-80] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + + I E+ L RL F I + G Sbjct: 40 FHALTQSE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + S+ + V C + + ++ +LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 157 VKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205 >gi|256821224|ref|YP_003142423.1| two component transcriptional regulator, LuxR family [Anaerococcus prevotii DSM 20548] gi|256799204|gb|ACV29858.1| two component transcriptional regulator, LuxR family [Anaerococcus prevotii DSM 20548] Length = 197 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ G + + IA +L +S T+ ++ + KL + N ++A KA+ Sbjct: 130 ADPLTKREIEVLKELIKGESKKNIAGRLYISERTLYNHIANIYDKLQSKNIVEAYNKAME 189 Query: 231 FGYI 234 GYI Sbjct: 190 LGYI 193 >gi|78060780|ref|YP_367355.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77965330|gb|ABB06711.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 209 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ LT+R+ L+ +G ++ IA+KLGLS T+ A++ + L+ Sbjct: 134 ALQHPDGAAAARGSMLTQRQIEVLRYLAEGVPNKVIADKLGLSEKTIKAHITAIFKALNV 193 Query: 219 VNRIQAIAKAIRFGYI 234 +NR QA A + G I Sbjct: 194 INRTQAAAAGRKAGLI 209 >gi|328883517|emb|CCA56756.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + ++A LT RE ++L +G +++EIA L +S T ++ A KL +R+Q Sbjct: 141 RPRPAAALHALTARENEVVRLVAEGRSNDEIAAALVISPLTAKTHISRAITKLGLRDRVQ 200 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 201 LVITAYEHGLV 211 >gi|325262648|ref|ZP_08129385.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032480|gb|EGB93758.1| DNA-binding response regulator [Clostridium sp. D5] Length = 206 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +RE ++L DG +++EIA L LS TV YL S KL+ +R Q + Sbjct: 150 DRELEIIRLIADGLSNKEIASTLFLSEGTVRNYLSSILDKLELRDRTQVAVFYYQH 205 >gi|319782058|ref|YP_004141534.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167946|gb|ADV11484.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +L+ RE L L +G ++ IA +L +SVHT ++ + +KL A NR Sbjct: 136 ASDEHAVRPSLSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTD 195 Query: 224 AIAKAIRFGYI 234 AIA A+R G + Sbjct: 196 AIATAMRQGLV 206 >gi|302525216|ref|ZP_07277558.1| predicted protein [Streptomyces sp. AA4] gi|302434111|gb|EFL05927.1| predicted protein [Streptomyces sp. AA4] Length = 511 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCL 182 LG + + A + L +R LT RE L Sbjct: 399 LGEPRPHRAPLAPDATARQLTAEARAGRLDPDAVNAVLAAAGRRVRRTSGGLTGREVEVL 458 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++ EIA L +S TV+ +L KL R QA A+R G Sbjct: 459 LQLAQGLSNPEIAAALTVSRKTVSTHLEHIYAKLGVTTRTQAALVAMRRGL 509 >gi|167949597|ref|ZP_02536671.1| response regulator [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 181 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + ++ + L+ RET + + +G ++EI++ L LS TV+ Y KLD N ++ Sbjct: 105 RHSATPFQGLSSRETQVMLMILEGQRNQEISDGLSLSPKTVSTYRQRIYEKLDVRNDVEL 164 Query: 225 IAKAIRFGYI 234 A R G + Sbjct: 165 TRLAYRHGIL 174 >gi|111022239|ref|YP_705211.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821769|gb|ABG97053.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 226 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 15/155 (9%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 + + + L + +G L G+++ S L V A Sbjct: 69 ATRDLRSGAQPPPVLVLTTFDDDELLSG-----SLRAGAAGFILEDSPAEDLIRAVRTVA 123 Query: 150 HGACY---QVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLG 199 G V L ++ + ++ LT RE L L G G+++ EI +LG Sbjct: 124 EGGACLDPAVTGRVLATYRTVAPSSDGGRNHLTELTARELDVLALIGRGHSNSEIGRELG 183 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV +++G +KLD +R AI A G + Sbjct: 184 ISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIV 218 >gi|329941026|ref|ZP_08290306.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300320|gb|EGG44218.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 227 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +R+ + + ++A A G + D + + LT RE Sbjct: 118 IRVAAGGEALLSPAATKGLIAR---FLAQGDADEDGRDRVHAER-----LAALTGREREV 169 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G++++EIAE+L +S TV ++ A KL A +R Q + A G + Sbjct: 170 LVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMSKLGARDRAQLVFIAYESGLV 222 >gi|311894385|dbj|BAJ26793.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 6/137 (4%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + + + + + + L Sbjct: 86 FDLDEYAFAGLAAGASGFLLKNTRPEQLLAAIRDVAAGDAVLSPRITRRLLEDVRPHLPA 145 Query: 164 F------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + L+ RE L G G ++ EIA L L+ TV ++LG KL Sbjct: 146 APDHRDHRDLPDPSARLSAREHEVLVQVGRGLSNAEIAAALHLAEATVKSHLGRILPKLG 205 Query: 218 AVNRIQAIAKAIRFGYI 234 +R+QA+ A R G + Sbjct: 206 LRDRVQAVVLAHRAGLV 222 >gi|307325986|ref|ZP_07605185.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888478|gb|EFN19465.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 230 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + L G G +++EIA +L +S T ++ VKL +R Q + A G + Sbjct: 165 TEREREVMALVGMGLSNQEIARRLVVSPLTAKTHVSRTMVKLGVRDRAQLVVLAYESGLV 224 >gi|269954904|ref|YP_003324693.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269303585|gb|ACZ29135.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 220 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + L++RE ++L G ++++IA++L LS+ TV YL KLD +R Sbjct: 144 RPDHPHPFVGKVLSQREVDVVRLVALGRSNQQIADELVLSLETVRTYLRRMFAKLDVNDR 203 Query: 222 IQAIAKAIRFGYI 234 Q A R G + Sbjct: 204 TQLAVLAYRAGLL 216 >gi|237728994|ref|ZP_04559475.1| DNA-binding transcriptional activator UhpA [Citrobacter sp. 30_2] gi|226909616|gb|EEH95534.1| DNA-binding transcriptional activator UhpA [Citrobacter sp. 30_2] Length = 197 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 12/119 (10%) Query: 118 IAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRS 168 I V G F S+ E+I H +L K + Sbjct: 76 IMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKLAA 132 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE + G +EIA +LGLS TV+ + + KL N ++ + Sbjct: 133 GRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191 >gi|254381629|ref|ZP_04996993.1| luxR family two-component response regulator [Streptomyces sp. Mg1] gi|194340538|gb|EDX21504.1| luxR family two-component response regulator [Streptomyces sp. Mg1] Length = 234 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Query: 154 YQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ + ++ L +ERE S L+L G+G T+ +IA++L LS TV ++ Sbjct: 142 ARLMHSLRDPEAVKAPDDDRLAALSERERSVLELIGEGLTNAQIAKRLYLSEKTVKNHIS 201 Query: 211 SATVKLDAVNRIQAIAKAIR 230 KL R+QA A + Sbjct: 202 RLLDKLGVERRVQAAVIAAQ 221 >gi|254381144|ref|ZP_04996509.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340054|gb|EDX21020.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 219 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173 + G E ++ A ++ +T L AA Sbjct: 95 LHAGASGFLVKDMALEDILSAIRIVAAGDALIAPAVTRRLIKEFTARPAASPPRRAELGA 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L L G G ++ EIA +L +S+ T YL KLDA +R+Q + A G Sbjct: 155 ITAREREVLTLVGRGLSNTEIAGELCISIATAKTYLTRLLAKLDARDRVQLVILAYEAGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|171912646|ref|ZP_02928116.1| methyl-accepting chemotaxis sensory transducer [Verrucomicrobium spinosum DSM 4136] Length = 331 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + LT RE L+ +G ++ EI LG+S HTV ++ KL NR+ Sbjct: 257 LDGSPQAPDETLTAREKEVLEWMQEGKSNPEIGVILGISTHTVKRHVERVLAKLGVENRV 316 Query: 223 QAIAK 227 A Sbjct: 317 AAALY 321 >gi|170682867|ref|YP_001745790.1| LuxR family transcriptional regulator [Escherichia coli SMS-3-5] gi|218707149|ref|YP_002414668.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli UMN026] gi|293407137|ref|ZP_06651061.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298382887|ref|ZP_06992482.1| HTH-type transcriptional regulator yhjB [Escherichia coli FVEC1302] gi|300897310|ref|ZP_07115744.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300936733|ref|ZP_07151631.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|301025850|ref|ZP_07189340.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|170520585|gb|ACB18763.1| transcriptional regulator, LuxR family [Escherichia coli SMS-3-5] gi|218434246|emb|CAR15164.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli UMN026] gi|284923545|emb|CBG36640.1| transcriptional regulator [Escherichia coli 042] gi|291425948|gb|EFE98982.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298276723|gb|EFI18241.1| HTH-type transcriptional regulator yhjB [Escherichia coli FVEC1302] gi|300358916|gb|EFJ74786.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300395816|gb|EFJ79354.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|300458148|gb|EFK21641.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] Length = 200 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 247 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 5/105 (4%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGY 189 S ++A E+ + + + LT RE L+ +G Sbjct: 141 ASPSEVVARELASIRALLSERTLATATPAQTSAPTPLPPPIKVELTPREQQVLEKVAEGL 200 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA++L SV V Y+ K +R + + A+ +G I Sbjct: 201 MNKEIAKQLQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 245 >gi|15800094|ref|NP_286106.1| putative response regulator; hexosephosphate transport [Escherichia coli O157:H7 EDL933] gi|15829672|ref|NP_308445.1| transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|168761556|ref|ZP_02786563.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4501] gi|168786197|ref|ZP_02811204.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC869] gi|168800234|ref|ZP_02825241.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC508] gi|217324617|ref|ZP_03440701.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. TW14588] gi|261223843|ref|ZP_05938124.1| putative transcription regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261256051|ref|ZP_05948584.1| putative transcription regulator [Escherichia coli O157:H7 str. FRIK966] gi|291281271|ref|YP_003498089.1| putative response regulator [Escherichia coli O55:H7 str. CB9615] gi|12513205|gb|AAG54714.1|AE005216_2 putative response regulator; hexosephosphate transport [Escherichia coli O157:H7 str. EDL933] gi|13359875|dbj|BAB33841.1| putative transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|189368080|gb|EDU86496.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4501] gi|189373654|gb|EDU92070.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC869] gi|189377424|gb|EDU95840.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC508] gi|217320838|gb|EEC29262.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. TW14588] gi|290761144|gb|ADD55105.1| Putative response regulator [Escherichia coli O55:H7 str. CB9615] gi|320192773|gb|EFW67413.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC1212] gi|320638355|gb|EFX08069.1| putative response regulator [Escherichia coli O157:H7 str. G5101] gi|320643736|gb|EFX12859.1| putative response regulator [Escherichia coli O157:H- str. 493-89] gi|320649086|gb|EFX17664.1| putative response regulator [Escherichia coli O157:H- str. H 2687] gi|320655979|gb|EFX23895.1| putative response regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662536|gb|EFX29925.1| putative response regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320665106|gb|EFX32199.1| putative response regulator [Escherichia coli O157:H7 str. LSU-61] gi|326341121|gb|EGD64913.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. 1044] gi|326346104|gb|EGD69843.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. 1125] Length = 209 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147 I E+ L RL F I + + L E ++ Sbjct: 53 IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112 Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A H C I L + + A LT RE +L G + +EIA KL Sbjct: 113 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFELLVKGDSVKEIAFKLE 171 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV+ + + KL+ + I+ + A+ + Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206 >gi|158316449|ref|YP_001508957.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111854|gb|ABW14051.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 223 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERE 178 LG + + ++ + ++ +I +L + A LT+RE Sbjct: 103 FLGKGVEPDELVAAIRVVARGDALLSPQAT-RHLIEQYLRQPATPAPAVTAGLDLLTKRE 161 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++L G T++EIAE+L LS TV + A K+ A +R Q + A + G Sbjct: 162 NEIVRLIAYGLTNDEIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGL 216 >gi|332666500|ref|YP_004449288.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335314|gb|AEE52415.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 209 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R+ L+ RE LQ +G + + IA LG+S+ TV ++ KL + +A Sbjct: 142 QQRALELERLSPREKEILQHLANGDSQKMIAYDLGISLETVKTHIKRIYEKLQVHSLAEA 201 Query: 225 IAK 227 IAK Sbjct: 202 IAK 204 >gi|284991855|ref|YP_003410409.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065100|gb|ADB76038.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 248 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL-ELFKKRSSAARNLTERETSC 181 G++ T + V A G +++T L L ++ LTERE Sbjct: 133 AGAAGFIAKTQRLDDVIEGVRAAAQGESVVNVKLLTRLLPRLHRQSGGGGAVLTEREREI 192 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ +IA++L +SVHTV ++ + + KL A ++++ ++ A+R G + Sbjct: 193 LDLLARGLSNADIAQQLTISVHTVRNHVANLSAKLGAHSKLEVLSIAVRDGLV 245 >gi|257057243|ref|YP_003135075.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587115|gb|ACU98248.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 36/79 (45%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 D +L++RE + L G G ++ EI +L LS TV Y+ + K Sbjct: 137 AHRDGQRASAPARELLASLSDREREVVTLIGQGLSNAEIGGRLHLSEATVKGYVSAVLSK 196 Query: 216 LDAVNRIQAIAKAIRFGYI 234 + A NR+QA A R G + Sbjct: 197 IGAANRVQAALLAYRGGLV 215 >gi|229820312|ref|YP_002881838.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566225|gb|ACQ80076.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A +I ++ A +L+ RE L L G+++ EIA +L ++ TV ++ Sbjct: 133 RATRALIDRIARAAPDAAAVAADLSPRERDVLALLARGFSNAEIARELFVAESTVKTHVS 192 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 S T K+ +R+ + A R G Sbjct: 193 SLTRKVGVRDRLHVVVWAYRNGI 215 >gi|146343657|ref|YP_001208705.1| CheY/LuxR family two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196463|emb|CAL80490.1| Two-component transcriptional regulator, CheY-LuxR families (two-component signal transduction system) [Bradyrhizobium sp. ORS278] Length = 305 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 28/56 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G T+ +IA+ LGLS TV+ +L KL NR A A A Sbjct: 242 GLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 297 >gi|72163349|ref|YP_291006.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71917081|gb|AAZ56983.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 221 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 18/167 (10%) Query: 83 GLLPI---IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNG 130 +P+ + S ++ + A + G Sbjct: 49 SRIPVVKPDVAILDVRLPDGSGVEVCREIRSSHPDIACLMLTSFADDDALFKAVMAGAAG 108 Query: 131 YVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 YV+ L V A G + + L + LT +E L L Sbjct: 109 YVLKQIHGSDLVGAVRTVASGGSLLDPRSTGRMLERLRQNGGKPDPLAALTPQERQILDL 168 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G+G T+ +I E+L L+ TV Y+ S KLD R QA + Sbjct: 169 IGEGLTNRQIGERLFLAEKTVKNYVSSLLGKLDLKRRTQAAVLVAQL 215 >gi|284045440|ref|YP_003395780.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949661|gb|ADB52405.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 228 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + LT RE L L G ++ EI + L + TV +++ KL +R+ Sbjct: 150 LRPSSDARLSELTPREQEVLLLMAQGLSNREIVDALAVEETTVKSHVRRVLSKLGVRDRV 209 Query: 223 QAIAKAIRFGYI 234 A+ A G + Sbjct: 210 HAVILAYESGLV 221 >gi|229591752|ref|YP_002873871.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229363618|emb|CAY50939.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 89 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + ++ + A + LT E L+ A +G T EI++ S TV +L + KL+ NR Sbjct: 17 AVRRRLNLAGKPLTPAELEILRWASEGKTVWEISQIRTTSEATVKFHLRNIYGKLEVSNR 76 Query: 222 IQAIAKAIRFGY 233 +QA+ +A R G Sbjct: 77 VQAMNEAARQGL 88 >gi|256420485|ref|YP_003121138.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035393|gb|ACU58937.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L +G T+ EIAEKL +S TVN++ KL+ N I A+ Sbjct: 145 PPLTRREKEVLSLISEGNTNAEIAEKLFISADTVNSHRKKLLAKLEVKNTAMLIKYAVDN 204 Query: 232 GYI 234 + Sbjct: 205 KLL 207 >gi|298244448|ref|ZP_06968254.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551929|gb|EFH85794.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1024 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L L G + EIA +L + TV A++ + KL+ +R+QAIA+A Sbjct: 963 PLSWREREVLYLMATGRKNREIARELFVVTGTVKAHINNIYRKLNVNSRVQAIARAKTLH 1022 Query: 233 YI 234 + Sbjct: 1023 LL 1024 >gi|300088612|ref|YP_003759134.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528345|gb|ADJ26813.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 227 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 33/66 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L RE L L G T++EIA KLGL+ TV +G KL+A NR QA Sbjct: 161 SGPEILLKSREKQVLDLIVKGLTNKEIAMKLGLAEVTVKKIIGHLLHKLNAANRTQAALA 220 Query: 228 AIRFGY 233 A + G Sbjct: 221 AKQLGL 226 >gi|225020543|ref|ZP_03709735.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii ATCC 33806] gi|305679908|ref|ZP_07402718.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|224946673|gb|EEG27882.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii ATCC 33806] gi|305660528|gb|EFM50025.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 232 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L GYT +EIA +L +S+ TV + + K NR A Sbjct: 167 PIVDALTRRELEVLRLLARGYTYKEIAGQLFISIKTVETHASNILRKTQQSNRHALTRWA 226 Query: 229 IRFGY 233 Sbjct: 227 HSRDL 231 >gi|153807885|ref|ZP_01960553.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185] gi|149129494|gb|EDM20708.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185] Length = 219 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E + L+ G T++EIA + LS HT+N++ + KL N +A A+R G Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211 Query: 234 I 234 + Sbjct: 212 V 212 >gi|126727851|ref|ZP_01743680.1| two component transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126702873|gb|EBA01977.1| two component transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 232 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S +LT ++ L+L +G +++IA +L ++ TV A++ + KL +R QA+ A Sbjct: 161 SRLASLTNQQARILELICEGKLNKQIAFELTIAETTVKAHVTAIMRKLQVHSRTQAVLVA 220 Query: 229 IRF 231 Sbjct: 221 QEA 223 >gi|16762696|ref|NP_458313.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144183|ref|NP_807525.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052820|ref|ZP_03345698.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419230|ref|ZP_03352296.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426509|ref|ZP_03359259.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580128|ref|ZP_03361954.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647458|ref|ZP_03377511.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824322|ref|ZP_06543915.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298761|pir||AG0986 hypothetical luxR-family transcription regulator STY4197 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505002|emb|CAD08019.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29139820|gb|AAO71385.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 200 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 102 PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195 >gi|330988560|gb|EGH86663.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 909 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 845 SDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKV 904 Query: 231 FGYI 234 G + Sbjct: 905 LGLL 908 >gi|320199699|gb|EFW74289.1| Putative regulator [Escherichia coli EC4100B] Length = 200 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|304406021|ref|ZP_07387679.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345264|gb|EFM11100.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 201 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 4/104 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++ S LA+ + I A G EL + LTERE + L L DG Sbjct: 100 GYLLKDSPSEELASSIRIIAGGRRLYA----PELMDEAYGEENPLTEREKAVLVLIADGK 155 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++EI+++L ++ T+ Y+ KL NR++AI + G+ Sbjct: 156 STKEISKELFITTGTIRNYISVILNKLGVGNRVEAIKQFKEKGW 199 >gi|291298136|ref|YP_003509414.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567356|gb|ADD40321.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L L++RE ++ G T++E+A +L +S+ TV +++ S KL Sbjct: 136 LLSHLAPGAGEPEPDHRLSDRELEVVRAIAIGRTNQEVAAELFISLSTVKSHVSSIQAKL 195 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR+ A A + Sbjct: 196 GARNRVAIAAWAWEHRVV 213 >gi|229494594|ref|ZP_04388357.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229318956|gb|EEN84814.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 220 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + RS + L+ RE +QL G + +IA+ L L TV +++ Sbjct: 133 LIVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHIS 192 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL R+Q + A R I Sbjct: 193 NICKKLQVRTRVQIVIWAYRNNVI 216 >gi|256396087|ref|YP_003117651.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362313|gb|ACU75810.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 213 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L + A G +L + R A LT RE L Sbjct: 100 AGAIGYLLKDTTREQLVEAIRGAARGETVLAPRIAAKLVARMRQPAPVVLTTREVDVLNG 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ +I ++L ++ TV +L KLD +R A+ A+ G + Sbjct: 160 VADGLSNADIGKRLVIAEATVKTHLLRVFAKLDVSDRTHAVVTALERGLL 209 >gi|91794445|ref|YP_564096.1| regulatory protein, LuxR [Shewanella denitrificans OS217] gi|91716447|gb|ABE56373.1| transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 222 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 12/159 (7%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG--FHKNGYVIFT 135 ++ +P++ + + L G L + + VR + ++ T Sbjct: 57 AALDNKGIPLLVSRLVNHVPV----ALYQVERGSLDQESALLLGVRGLLYADQRMDLMLT 112 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGY 189 M+ANE+ + +L A LT RE + +QL G Sbjct: 113 GLRKMVANELWYDRPLISRIFRRLVQKLDANNDMPADTIAMLQMLTNRERTIIQLVSSGA 172 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++EIA +L +S HTV A+L S K + NR++ + A Sbjct: 173 RNKEIAHRLCISEHTVKAHLSSVFRKTQSRNRVELLRWA 211 >gi|332996217|gb|EGK15844.1| transcriptional regulator, LuxR family [Shigella flexneri VA-6] Length = 196 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 98 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 158 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191 >gi|323435982|ref|ZP_01049465.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis MED134] gi|321496297|gb|EAQ39437.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis MED134] Length = 537 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 37/70 (52%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L+ + S + NL++RET L G+T+++I E L +S+ TV + + KLD Sbjct: 466 EQTLQESVDQISTSHNLSKRETEVLLELSKGFTNKQIGEALHISIATVKFHTSNIYAKLD 525 Query: 218 AVNRIQAIAK 227 NR + I K Sbjct: 526 VSNRSEVIKK 535 >gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 319 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|227486353|ref|ZP_03916669.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227235764|gb|EEI85779.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 196 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G T+ +IA+ L +S T+ ++ + KL N+++ KA+ G Sbjct: 132 PLTKREEEVLKALITGKTNTQIAKDLYISERTLYHHIENIYEKLKVENKVELYGKALELG 191 Query: 233 YI 234 Y+ Sbjct: 192 YV 193 >gi|218691961|ref|YP_002400173.1| DNA-binding transcriptional activator UhpA [Escherichia coli ED1a] gi|218429525|emb|CAR10348.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli ED1a] Length = 196 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|254472068|ref|ZP_05085469.1| two component transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] gi|211959270|gb|EEA94469.1| two component transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] Length = 219 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K + +LT ++ L + G +++IA +L +S TV A++ + KL +R Q Sbjct: 142 ATKMAQRLASLTPQQVRVLMMLSQGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQ 201 Query: 224 AIAKAIR 230 A+ A + Sbjct: 202 AVIAAAK 208 >gi|170782617|ref|YP_001710951.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157187|emb|CAQ02370.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 232 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAARNLTE 176 G+V+ +E V A G +V+ +F + LT Sbjct: 114 AGARGFVLKDAEPEEFIQAVRALAEGRAALDGVTTRRVMDEFTRRRVASAVHPGVEVLTP 173 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L GDG +++EI +L + TV ++L KL +R+Q + R G + Sbjct: 174 REQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL 231 >gi|332763477|gb|EGJ93716.1| putative regulator [Shigella flexneri 2930-71] Length = 196 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 98 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 158 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191 >gi|302036415|ref|YP_003796737.1| LuxR family response regulator (fragment) [Candidatus Nitrospira defluvii] gi|300604479|emb|CBK40811.1| Response regulator, LuxR family (fragment) [Candidatus Nitrospira defluvii] Length = 106 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL G T+ IAE+L +S+ T A+ + KL N Q + A+ Sbjct: 37 RPEELTPREQEILQLVWAGLTNRTIAEQLHISIKTAEAHRANMMKKLRVSNIAQLLKTAL 96 Query: 230 RFGYI 234 G + Sbjct: 97 EEGLL 101 >gi|57864907|gb|AAW57081.1| 2-component response regulator [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 224 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ +I +KL LS TV Y+ S K + NR + + A+ I Sbjct: 163 TPREVQVLNLLTTGLSNGDIGQKLHLSPRTVEKYVSSLLRKTETNNRAELVRFALDHHLI 222 >gi|328885169|emb|CCA58408.1| transcriptional regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 327 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 15/227 (6%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + ++ ++ RL + A + A + ++ + + + + Sbjct: 116 AEHLDNVDDIRTRLEALAESCTAESLAFH-----PGKALTEESVEAGRPLNERAMERGVR 170 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 Y D + E E ++ + ++ A G Sbjct: 171 FRTIYLDSV--AGDRVTRA--HAQWMAERGSEIRTSPTLPMRLLIVDTAAAVVAGLPGQA 226 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + ++F+S+ ++LA + EA+ L + LT +E LQL Sbjct: 227 RPSALLFSSQPVVLAMRALFEAYWEHAS------PLDGPGDALPGGLTPQERKLLQLLAS 280 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T E +A LG+ V T + +L A +R +A +A R +I Sbjct: 281 GLTDEAVARALGIGVRTERRIVADLMERLGASSRFEAGVQATRREWI 327 >gi|315618449|gb|EFU99036.1| bacterial regulatory s, luxR family protein [Escherichia coli 3431] Length = 185 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 87 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 146 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 147 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 180 >gi|297162582|gb|ADI12294.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 3/106 (2%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDG 188 + ++ + A +++ F + LT RE L G G Sbjct: 117 EHLAAAVRLVDTGDALLAPSITRRLVERFASPSAPAPAQHADLAALTPRELEVPGLLGRG 176 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ E+A +L LS TV +++ KL +R QA+ A G + Sbjct: 177 LSNAELAVELTLSEATVKSHVARIFAKLALRDRAQAVVLAYETGLV 222 >gi|300779885|ref|ZP_07089741.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533995|gb|EFK55054.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 222 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L A LT RE L G T+ EI+++L ++ TV ++ + VKL A +R Sbjct: 149 ALSDYERQALSMLTAREVEVLAEIAAGATNAEISQRLFIAPTTVKTHVKNLLVKLGARDR 208 Query: 222 IQAIAKAIRFGY 233 + + A R G Sbjct: 209 VALVLLAHRAGI 220 >gi|239994578|ref|ZP_04715102.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii ATCC 27126] Length = 225 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE + + DG ++EIA+ L +SV+TV ++ S K D NR++ I Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNRVELIKW 212 >gi|225021681|ref|ZP_03710873.1| hypothetical protein CORMATOL_01709 [Corynebacterium matruchotii ATCC 33806] gi|305681258|ref|ZP_07404065.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|224945672|gb|EEG26881.1| hypothetical protein CORMATOL_01709 [Corynebacterium matruchotii ATCC 33806] gi|305659463|gb|EFM48963.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 200 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 140 MLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + A + V + L + R + LT RE A D + +IA Sbjct: 104 DTPPDELAAAVRRVHHGLRVFDNHL-VEAARRAGNNPLTPREIEICNAAKDHASVAQIAN 162 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ LS TV +L + K A N +AI AI G++ Sbjct: 163 RIFLSEGTVRNHLSNVMAKTGARNYHEAIHAAITKGWL 200 >gi|260905348|ref|ZP_05913670.1| two-component system response regulator [Brevibacterium linens BL2] Length = 224 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 43/97 (44%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 ++ E ++ Y + L L + + LT+RE L L G G +++EIA + Sbjct: 120 RVVAEGEALLSPEVTRYLLSRMSLGLRAEPAKHLDVLTQREREVLALVGQGLSNDEIAAQ 179 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS T ++ K+ A +R+ + A G + Sbjct: 180 LVLSPLTAKTHVSRIMSKVAARDRVHLVVLAYESGLV 216 >gi|109898765|ref|YP_662020.1| two component LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109701046|gb|ABG40966.1| two component transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 214 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + +L+ERE + G +IA+ L +S TVN + KL+ Sbjct: 137 ALDFSDGNPFESLSERELEITLMLTKGSKVPDIAKFLNISAKTVNTHRYRMFEKLNVSTD 196 Query: 222 IQAIAKAIRFGYI 234 ++ A+R I Sbjct: 197 VELTHLALRHKLI 209 >gi|330503564|ref|YP_004380433.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328917850|gb|AEB58681.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 907 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L + + ++++ RE L+L G ++ +IA+ + LS T+ +L + KL Sbjct: 829 RRLSIDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHLHNLFSKLGV 888 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA+ K G + Sbjct: 889 RSRTQAVLKGKSLGLL 904 >gi|311103650|ref|YP_003976503.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758339|gb|ADP13788.1| bacterial regulatory protein, LuxR family protein 1 [Achromobacter xylosoxidans A8] Length = 212 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Query: 126 FHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVIT-DFLELFKKRSSAARNLTERETSCL 182 G++ ++ LA E + EA A V + L + ++ R LT R+ L Sbjct: 97 AGAQGFLNKSASCQELAAALEAVSEAQPAHRSVSSSALLAGGQDEAALLRALTPRQNEVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L DG ++EI+E+L ++ TV ++ + L +NR QA A R G Sbjct: 157 CLMCDGLRNKEISERLNMTEKTVKTHVSAILGTLGVLNRTQATLVARRGG 206 >gi|298252028|ref|ZP_06975831.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546620|gb|EFH80488.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1079 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LT RE L+L +G ++++IA L + + TV ++GS KL A +R Sbjct: 1007 RVASASPAPVEPLTRRELEVLRLLAEGASNQQIAAVLVIQLSTVKKHVGSLLAKLGAESR 1066 Query: 222 IQAIAKAIRFGYI 234 QA+ KA F + Sbjct: 1067 TQALVKARAFSLL 1079 >gi|261250453|ref|ZP_05943028.1| transcriptional regulator LuxR family [Vibrio orientalis CIP 102891] gi|260939022|gb|EEX95009.1| transcriptional regulator LuxR family [Vibrio orientalis CIP 102891] Length = 211 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ + Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207 >gi|224026836|ref|ZP_03645202.1| hypothetical protein BACCOPRO_03593 [Bacteroides coprophilus DSM 18228] gi|224020072|gb|EEF78070.1| hypothetical protein BACCOPRO_03593 [Bacteroides coprophilus DSM 18228] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +L+ K + A LT E L+ G ++++IA + LS++TV + + KL Sbjct: 132 VAAWLKQSGKTTDAVSPLTTTEKEILRAMALGKSTKDIASERFLSIYTVMTHRKNIFRKL 191 Query: 217 DAVNRIQAIAKAIRFGYI 234 N +AI A+R G + Sbjct: 192 GVNNAHEAIRHALRSGLV 209 >gi|239817406|ref|YP_002946316.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803983|gb|ACS21050.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 224 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARN---LTERE 178 + +++ + E + I + + +S A L+ RE Sbjct: 108 DDAELAFLLRSIERGGAPVDSRIARRILGLFAASAQPKPIAIHPVPASLAEGKPLLSPRE 167 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G+++++IAE + LSV+T+ + + KL +R QA+ +A + G Sbjct: 168 LKVLRLIAQGWSNQQIAEAVSLSVNTIEFHAKNIYRKLSVKSRTQAVHQATQQGL 222 >gi|217978159|ref|YP_002362306.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217503535|gb|ACK50944.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 306 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R A LT RE L G ++ +I+ L +S TVN +L KL NR A Sbjct: 236 QRLKEAMTLTSREAEVLVWLAAGKSNRDISAILSISPRTVNKHLEQIFRKLGVENRAAAA 295 Query: 226 AKAIR 230 A++ Sbjct: 296 VMAVQ 300 >gi|111019249|ref|YP_702221.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110818779|gb|ABG94063.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 211 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 5/114 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTER 177 + G L+ A + E + + + ++ A L+E+ Sbjct: 95 IMAGASGFVLKQILGTDLVAAVRTVGEGGSLLDSRATSALMNRIRSARREDPLAE-LSEQ 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E + +L G+G T+ EIAE+L L+ T+ Y+ KL R QA A Sbjct: 154 ERAVFELIGEGLTNREIAERLFLAEKTIKNYVSRLLSKLGMQRRTQAAVLATEL 207 >gi|21223147|ref|NP_628926.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|29831541|ref|NP_826175.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|182436552|ref|YP_001824271.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239929430|ref|ZP_04686383.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|239979981|ref|ZP_04702505.1| putative two-component system response regulator [Streptomyces albus J1074] gi|239990114|ref|ZP_04710778.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|254383110|ref|ZP_04998464.1| two-component system response regulator [Streptomyces sp. Mg1] gi|254392007|ref|ZP_05007198.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|256785756|ref|ZP_05524187.1| putative two-component system response regulator [Streptomyces lividans TK24] gi|282860879|ref|ZP_06269945.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|289769648|ref|ZP_06529026.1| two-component system response regulator [Streptomyces lividans TK24] gi|290958081|ref|YP_003489263.1| luxR family regulator [Streptomyces scabiei 87.22] gi|291437756|ref|ZP_06577146.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291447128|ref|ZP_06586518.1| whiK [Streptomyces roseosporus NRRL 15998] gi|291451838|ref|ZP_06591228.1| whiK [Streptomyces albus J1074] gi|294630967|ref|ZP_06709527.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|294814529|ref|ZP_06773172.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|295838473|ref|ZP_06825406.1| two-component system, regulatory protein [Streptomyces sp. SPB74] gi|297192634|ref|ZP_06910032.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297201810|ref|ZP_06919207.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|302519583|ref|ZP_07271925.1| whiK [Streptomyces sp. SPB78] gi|302536316|ref|ZP_07288658.1| whiK [Streptomyces sp. C] gi|302543269|ref|ZP_07295611.1| two-component system, regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302553613|ref|ZP_07305955.1| two-component system, regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302558923|ref|ZP_07311265.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|307331078|ref|ZP_07610207.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|318058051|ref|ZP_07976774.1| luxR family regulator [Streptomyces sp. SA3_actG] gi|318080229|ref|ZP_07987561.1| luxR family regulator [Streptomyces sp. SA3_actF] gi|326442919|ref|ZP_08217653.1| luxR family regulator [Streptomyces clavuligerus ATCC 27064] gi|326777175|ref|ZP_08236440.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|329938172|ref|ZP_08287623.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|333026588|ref|ZP_08454652.1| putative two-component regulator [Streptomyces sp. Tu6071] gi|3449280|emb|CAA20424.1| putative two-component regulator [Streptomyces coelicolor A3(2)] gi|3618247|emb|CAA09263.1| whiK [Streptomyces coelicolor A3(2)] gi|29608657|dbj|BAC72710.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] gi|178465068|dbj|BAG19588.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|194342009|gb|EDX22975.1| two-component system response regulator [Streptomyces sp. Mg1] gi|197695725|gb|EDY42658.1| two-component system, regulatory protein [Streptomyces sp. SPB74] gi|197705685|gb|EDY51497.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197717529|gb|EDY61563.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197722965|gb|EDY66873.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|260647607|emb|CBG70712.1| putative luxR family regulator [Streptomyces scabiei 87.22] gi|282564615|gb|EFB70151.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|289699847|gb|EFD67276.1| two-component system response regulator [Streptomyces lividans TK24] gi|291340651|gb|EFE67607.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291350075|gb|EFE76979.1| whiK [Streptomyces roseosporus NRRL 15998] gi|291354787|gb|EFE81689.1| whiK [Streptomyces albus J1074] gi|292834300|gb|EFF92649.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|294327128|gb|EFG08771.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|297159676|gb|ADI09388.1| putative luxR family regulator [Streptomyces bingchenggensis BCW-1] gi|302428478|gb|EFL00294.1| whiK [Streptomyces sp. SPB78] gi|302445211|gb|EFL17027.1| whiK [Streptomyces sp. C] gi|302460887|gb|EFL23980.1| two-component system, regulatory protein [Streptomyces himastatinicus ATCC 53653] gi|302471231|gb|EFL34324.1| two-component system, regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302476541|gb|EFL39634.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|306883289|gb|EFN14346.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|320009036|gb|ADW03886.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] gi|326657508|gb|EGE42354.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|328884500|emb|CCA57739.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] gi|329302661|gb|EGG46551.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|332746440|gb|EGJ76881.1| putative two-component regulator [Streptomyces sp. Tu6071] Length = 203 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY+ + L V +++ L + ++ LT RE L+ G Sbjct: 99 RGYLHKDASRAELRATVTQALADPTWRLAPRRLRSAEMGAAPT--LTAREIQVLEGMSHG 156 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EI +L LS TV + KL A +R A+A R+G + Sbjct: 157 RSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202 >gi|261211265|ref|ZP_05925554.1| transcriptional regulator LuxR family [Vibrio sp. RC341] gi|262190930|ref|ZP_06049145.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] gi|260839766|gb|EEX66377.1| transcriptional regulator LuxR family [Vibrio sp. RC341] gi|262033197|gb|EEY51720.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] Length = 209 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|300776299|ref|ZP_07086157.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300501809|gb|EFK32949.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 225 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ERE ++L T+ EI EKL +S TV ++ K+ A N + + AI Sbjct: 156 TEDELSEREKDVVKLICQELTNNEIGEKLFISPRTVESHRQRILEKIGAKNTVGIVIYAI 215 >gi|261345362|ref|ZP_05973006.1| DNA-binding response regulator UhpA [Providencia rustigianii DSM 4541] gi|282566405|gb|EFB71940.1| DNA-binding response regulator UhpA [Providencia rustigianii DSM 4541] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 11/159 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 I + ES QL RL F I + G + ++ Sbjct: 48 IDVAIMDISMPDESGLQLLTRLRKKKPDFRTIILSIYDTPAFVQSALDAGASAYLTKCCG 107 Query: 141 LAN--EVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIA 195 + + H + D + ++ + LT RE L G + + IA Sbjct: 108 PEELVQAVRSVHQGGCYLCADAMRALRQTPQQQHGIQELTNREREVFDLLVSGLSVKVIA 167 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+L LS TV+ + + KL + I+ + A+ I Sbjct: 168 EQLNLSHKTVHVHRANVLGKLQCDSTIELVHYALEHNII 206 >gi|71280792|ref|YP_268003.1| putative nitrate/nitrite DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71146532|gb|AAZ27005.1| putative nitrate/nitrite DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 206 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L G ++ IA++L +SV TV + + KL + + + AI +G Sbjct: 146 TRREQLVLRLISQGLNNKRIAQELNVSVRTVETHKRNIKQKLGIDSTVGLMRYAIDYGL 204 >gi|21220239|ref|NP_626018.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256788647|ref|ZP_05527078.1| two-component system response regulator [Streptomyces lividans TK24] gi|289772542|ref|ZP_06531920.1| two-component system response regulator [Streptomyces lividans TK24] gi|5531455|emb|CAB50960.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289702741|gb|EFD70170.1| two-component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 35/78 (44%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + R + LT RE L L G ++ EIA +L ++ TV +++GS KL Sbjct: 138 YATRAAPVRPREAVLAGLTPREREILLLVARGLSNPEIAARLVVTEATVKSHVGSMFAKL 197 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+ A + Sbjct: 198 HLRDRAQAVVFAYENAIV 215 >gi|121725788|ref|ZP_01679088.1| transcriptional regulator UhpA [Vibrio cholerae V52] gi|147671836|ref|YP_001215461.1| transcriptional regulator UhpA [Vibrio cholerae O395] gi|153211907|ref|ZP_01947754.1| transcriptional regulator UhpA [Vibrio cholerae 1587] gi|153830962|ref|ZP_01983629.1| transcriptional regulator UhpA [Vibrio cholerae 623-39] gi|229528490|ref|ZP_04417881.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)] gi|254285705|ref|ZP_04960668.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226] gi|262168530|ref|ZP_06036226.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27] gi|262191666|ref|ZP_06049843.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT 5369-93] gi|121631553|gb|EAX63921.1| transcriptional regulator UhpA [Vibrio cholerae V52] gi|124116983|gb|EAY35803.1| transcriptional regulator UhpA [Vibrio cholerae 1587] gi|146314219|gb|ABQ18759.1| transcriptional regulator UhpA [Vibrio cholerae O395] gi|148873558|gb|EDL71693.1| transcriptional regulator UhpA [Vibrio cholerae 623-39] gi|150424202|gb|EDN16140.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226] gi|227015255|gb|ACP11464.1| transcriptional regulator UhpA [Vibrio cholerae O395] gi|229334852|gb|EEO00338.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)] gi|262023059|gb|EEY41764.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27] gi|262032455|gb|EEY51016.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT 5369-93] gi|327485694|gb|AEA80100.1| Transcriptional regulatory protein UhpA [Vibrio cholerae LMA3894-4] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + + I E+ L RL F I + G Sbjct: 40 FHALTQAE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + S+ + V C + + ++ +LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 157 VQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205 >gi|223939687|ref|ZP_03631560.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891644|gb|EEF58132.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSE 192 +S+ L +V Q+ ++ F K S L+ E LQL GY + Sbjct: 109 SSKLLEAVRDVHAGGSPMSPQLARRLVQFFSKPQDVSPVSQLSPGEREFLQLLSKGYVYK 168 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 EIAEK+G+S TV Y+ + KL +R +A+ K Sbjct: 169 EIAEKMGISTDTVRYYVRTVYEKLHVHSRTEAVVK 203 >gi|87120553|ref|ZP_01076447.1| putative regulator in two-component regulatory system; LuxR family protein [Marinomonas sp. MED121] gi|86164196|gb|EAQ65467.1| putative regulator in two-component regulatory system; LuxR family protein [Marinomonas sp. MED121] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT + L +G +++IA +L +S TV A++ + KL NR QA+ A Sbjct: 150 ELTPSQYKVLCYLHEGLLNKQIAYELNISEATVKAHITAIFKKLSINNRTQAVLIASELK 209 Query: 233 Y 233 Sbjct: 210 L 210 >gi|328887358|emb|CCA60597.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 20/137 (14%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-------------- 163 + + L ++ ++ A +V+ L Sbjct: 87 VVLTTFDDDDHVYGALHAGASGFLVKDMALDDILAAVRVVAAGDALIAPGVTRRLIKEFT 146 Query: 164 FKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + R++ A +T+RE L L G G ++ E+A +L +SV T Y+ KL+ Sbjct: 147 DRPRTAPAVPRRRAEGITDREREVLTLVGRGLSNTEVAAELHISVATAKTYVTRLLAKLN 206 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R+Q + A G + Sbjct: 207 ARDRVQLVIIAYEAGLV 223 >gi|292491684|ref|YP_003527123.1| LuxR family transcriptional regulator [Nitrosococcus halophilus Nc4] gi|291580279|gb|ADE14736.1| regulatory protein LuxR [Nitrosococcus halophilus Nc4] Length = 229 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + A Q + + ++ + LT RE ++L G ++ IA +LG+S+ TV Sbjct: 138 RLWACMEKDQYARENKKKQEEIIARMARLTPREWEVMELVVKGRLNKVIAFELGISLKTV 197 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + KL + I A +C Sbjct: 198 ENHRAQVMKKLQVKTQADLIRLA----LLC 223 >gi|262376982|ref|ZP_06070208.1| response regulator [Acinetobacter lwoffii SH145] gi|262308020|gb|EEY89157.1| response regulator [Acinetobacter lwoffii SH145] Length = 211 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S L+ERE + + +++EIA+KL +SV TVN Y KL+ + + Sbjct: 138 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLNIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + A+R+G I Sbjct: 198 KLTHLAMRYGLI 209 >gi|262273261|ref|ZP_06051076.1| transcriptional regulator LuxR family [Grimontia hollisae CIP 101886] gi|262222634|gb|EEY73944.1| transcriptional regulator LuxR family [Grimontia hollisae CIP 101886] Length = 212 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +LT ++ L + DG +++IA +L +S T+ A++ + KL NR Q Sbjct: 141 EESLMDKISSLTPQQYKVLNMLNDGLLNKQIAYELDVSEATIKAHMTAIFRKLGVKNRTQ 200 Query: 224 AIAK 227 A+ Sbjct: 201 AVIL 204 >gi|114571288|ref|YP_757968.1| two component LuxR family transcriptional regulator [Maricaulis maris MCS10] gi|114341750|gb|ABI67030.1| two component transcriptional regulator, LuxR family [Maricaulis maris MCS10] Length = 201 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 +NG F + + V QV + + A +LT RE L Sbjct: 95 ENGARGFIPKTMPADGLVAAVRLILAGQVFSPIHHTTDPENEPA-SLTPREREVLFCLQR 153 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA L + TV +L S ++KLDA NR + + KAI+ G++ Sbjct: 154 GEANKEIARSLEIQETTVKLHLRSLSLKLDARNRTEVVVKAIQAGFL 200 >gi|74318482|ref|YP_316222.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057977|gb|AAZ98417.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S LT RE L G +++ IA L +S TV ++ KL+ +R++A Sbjct: 144 QDAGSLLDALTPREREILSHLSRGESNKAIARTLDISHDTVKLHVRHILAKLNLSSRVEA 203 Query: 225 IAKAIRF 231 A+ Sbjct: 204 AVFAVEH 210 >gi|16125402|ref|NP_419966.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221234145|ref|YP_002516581.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13422468|gb|AAK23134.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220963317|gb|ACL94673.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 201 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 39/66 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT+RE L+LA +G ++++IA+ L LS TV YL A KL A NR++A A Sbjct: 136 AEPDPLTDREREILRLAEEGRSNKDIADVLDLSPGTVRNYLSEAAQKLGAANRVEAGRIA 195 Query: 229 IRFGYI 234 G++ Sbjct: 196 RSNGWL 201 >gi|16263379|ref|NP_436172.1| Two-component response regulator [Sinorhizobium meliloti 1021] gi|307321169|ref|ZP_07600572.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|14524065|gb|AAK65584.1| Two-component response regulator [Sinorhizobium meliloti 1021] gi|306893160|gb|EFN23943.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 213 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE L G +++IA+ LG S TV A+ + KL + + ++ A R G Sbjct: 143 NLTPREFEVFGLIVRGKLNKQIAQALGTSERTVKAHRHNLMEKLGTRSLAETVSIAERLG 202 Query: 233 YI 234 + Sbjct: 203 LV 204 >gi|254230090|ref|ZP_04923487.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262392985|ref|YP_003284839.1| transcriptional regulator LuxR family [Vibrio sp. Ex25] gi|151937379|gb|EDN56240.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262336579|gb|ACY50374.1| transcriptional regulator LuxR family [Vibrio sp. Ex25] Length = 209 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 142 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 201 Query: 226 AK 227 Sbjct: 202 IM 203 >gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 227 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L G ++ ++ +L LS TV Y+ S K NR + + A++ G Sbjct: 165 SLTHREQEVLELLTHGLSNADMGHQLHLSPRTVEKYVSSLLRKTSTSNRAELVRFAMKHG 224 Query: 233 YI 234 + Sbjct: 225 LV 226 >gi|299137741|ref|ZP_07030922.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600382|gb|EFI56539.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 212 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 44/88 (50%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A ++ + + +L++RE LQL G ++ EIAE+L + TV Sbjct: 123 LYRVHAGHRFLPQVVSQALSSRVPGSHLSQREQEVLQLLFAGKSNREIAEELAIKEATVK 182 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++ ++L+ +R QA+ + ++ G + Sbjct: 183 SHVSVILMRLNVSDRTQAVVEGLKRGLV 210 >gi|298244504|ref|ZP_06968310.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551985|gb|EFH85850.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 51/113 (45%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +RL N +++ ++++ + + ++ +LTERE Sbjct: 110 IRLDTLLNAIRAAARGEILMQSDIMARLLSYTTKSAPFEPRASNQSHQSSIDLTEREREV 169 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G S++IA LG++ TV AYL S KL+ +R AI AIR+G + Sbjct: 170 LIAVARGDRSKDIARHLGIAERTVRAYLTSIYTKLNVTSRASAITVAIRYGIL 222 >gi|289668036|ref|ZP_06489111.1| transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 923 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L +ERE L GY++++IA L LS +TV +L + Sbjct: 827 RALTIQALLERLSGDDDPTCDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A+ G + Sbjct: 887 LYRKLDARSRENALAQALERGLL 909 >gi|295690124|ref|YP_003593817.1| LuxR family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432027|gb|ADG11199.1| two component transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 201 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 39/66 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT+RE L+LA +G ++++IAE L LS TV YL A KL A NR++A A Sbjct: 136 AEPDPLTDREREILRLAEEGRSNKDIAEVLELSPGTVRNYLSEAAQKLGAANRVEAGRIA 195 Query: 229 IRFGYI 234 G++ Sbjct: 196 RSNGWL 201 >gi|212635701|ref|YP_002312226.1| regulatory protein LuxR [Shewanella piezotolerans WP3] gi|212557185|gb|ACJ29639.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3] Length = 211 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE LQ+ G T+ +IA +L +S T+ +L A K+ +R QAIA A Sbjct: 145 SDTLTMREREVLQVLRSGSTNIDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202 >gi|190895071|ref|YP_001985364.1| two-component nodulation response regulator protein [Rhizobium etli CIAT 652] gi|218513916|ref|ZP_03510756.1| two-component nodulation response regulator protein [Rhizobium etli 8C-3] gi|190700732|gb|ACE94814.1| two-component nodulation response regulator protein [Rhizobium etli CIAT 652] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTE 176 P+ + K G + F ++ L + +++A A + + L + S +LT Sbjct: 86 IPISVRAMKAGAIEFLTK--PLREQELLDAAYAGIERDCARRQEVALIAELRSRYDSLTP 143 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + L G +++IA ++GLS TV + G K+ A + + + A G Sbjct: 144 REREIMNLVVAGSVNKQIAAQVGLSEVTVKVHRGHVMQKMQARSLVDLVRMADGLGL 200 >gi|157146272|ref|YP_001453591.1| DNA-binding transcriptional regulator CsgD [Citrobacter koseri ATCC BAA-895] gi|157083477|gb|ABV13155.1| hypothetical protein CKO_02029 [Citrobacter koseri ATCC BAA-895] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|160894495|ref|ZP_02075271.1| hypothetical protein CLOL250_02047 [Clostridium sp. L2-50] gi|156863806|gb|EDO57237.1| hypothetical protein CLOL250_02047 [Clostridium sp. L2-50] Length = 500 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+ E +L G ++++IA +LG TV + + KL R +A+ + Sbjct: 438 EPLTQMEEKVFRLMAQGLSNDDIARQLGKKTGTVKFHSCNIFRKLQVPTRQEAVERGREI 497 Query: 232 GYI 234 G + Sbjct: 498 GLL 500 >gi|118470159|ref|YP_884886.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171446|gb|ABK72342.1| transcriptional regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 272 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ L +R A L T RE L++ G T+ EIAE+L ++VHTV +++ Sbjct: 182 VSAILLRRLSTLAAQREPAPTELVLTRREIEILRMLEAGRTNREIAEQLCIAVHTVKSHV 241 Query: 210 GSATVKLDAVNRIQAIAK 227 + KL R QA A Sbjct: 242 HNLLAKLGVSTRAQAAAL 259 >gi|254254306|ref|ZP_04947623.1| Transcriptional regulator LuxR family [Burkholderia dolosa AUO158] gi|124898951|gb|EAY70794.1| Transcriptional regulator LuxR family [Burkholderia dolosa AUO158] Length = 251 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 54/235 (22%), Gaps = 24/235 (10%) Query: 14 LQELSPRLHLIQNRIKA----RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + L + A Y ++ + P +L + L Sbjct: 13 AADWHRALRACVDAFDAFASPSAVVFYRLDDS-GEPADFELFGMPESMHRAYVARYRTLD 71 Query: 70 ETYGDDFLFHFN------------SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 + W ++ +R G + Sbjct: 72 PLHPSRCAAGARAVVTLASELPDERRDASAYWTRFLRRHGAADVVEIWLRDAGRTVGAFS 131 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKK--RSSA 170 + + + + + L + R Sbjct: 132 LLRFATDRARGRAACTGADDGTTARFAPGEIDALARLQPVAEAALGPLLRARRGIHRIGC 191 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++EIA L L TV +L KL NR + Sbjct: 192 EARLTYREEQIARLVRDGRSNKEIARDLALGQPTVKTHLMRMYRKLGVSNRTGLV 246 >gi|108802949|ref|YP_642886.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764192|gb|ABG03074.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 222 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 4/106 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + +++ + + E + + L + A LT RE LQ +G Sbjct: 115 DAARRLAAGEPLMSPQEVAEMIRLAGRSREEERGLREN----AARLTPREREVLQALAEG 170 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIAE+L +SV T ++ + KL A +R+QA+ A R G + Sbjct: 171 LSNREIAERLHMSVDTERTHMVNILSKLGAHSRLQALVLAARAGVV 216 >gi|302531199|ref|ZP_07283541.1| predicted protein [Streptomyces sp. AA4] gi|302440094|gb|EFL11910.1| predicted protein [Streptomyces sp. AA4] Length = 295 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 21/117 (17%) Query: 139 LMLANEVIIEAHGACYQ-------VITDFLELFKKRSSA--------------ARNLTER 177 + + + EA + ++ K+ S A L+ R Sbjct: 156 RAVDSRRLAEAVRRAHHDRRYIDPALSALTARPKREPSPRAAPVDGQLVQPKGAMPLSRR 215 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL +G + IA+ L LSV TV ++ S KL A +R A+ A R G + Sbjct: 216 EYQVLQLVAEGLENSGIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRSGIL 272 >gi|271966618|ref|YP_003340814.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509793|gb|ACZ88071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 9/189 (4%) Query: 46 RRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS 105 ++ + + D + + + G + + P + V E+ Sbjct: 36 DGREAVALVERLRPDVVLMDVRMPDVDGLEATRRIVASGSPARVVILTTYDVDEAVFAAL 95 Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 L VR + +LA V V+ D Sbjct: 96 RAGASAFLLKD-----VRPAELVEAVRVVARGDALLAPSVTRRLLDRFASVLPD----PA 146 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ERE L+L ++ EIAE+L L+ TV ++ + KL +R+QA+ Sbjct: 147 GPPADLGRLSEREVEVLRLVALALSNAEIAERLVLTEATVKTHVSAVLRKLGLRDRVQAV 206 Query: 226 AKAIRFGYI 234 A G + Sbjct: 207 VLAYDVGLV 215 >gi|92112994|ref|YP_572922.1| two component LuxR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796084|gb|ABE58223.1| two component transcriptional regulator, LuxR family [Chromohalobacter salexigens DSM 3043] Length = 220 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ + E + + A +LT ++ L + +G +++IA +L +S T+ A++ + K Sbjct: 136 ILGESNEEEARFAEAIASLTPQQFRVLNMLNEGLLNKQIAYELNVSEATIKAHVTAILRK 195 Query: 216 LDAVNRIQAIAKAIRF 231 L +R QA+ A + Sbjct: 196 LGVHSRTQAVIAAQKL 211 >gi|302869068|ref|YP_003837705.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302571927|gb|ADL48129.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 978 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 39/81 (48%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + L LT RE L+L +G+++ IAE+L +S T + ++ Sbjct: 885 AATLARRVGLRGTGRPGPDLLTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRII 944 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KLD NR++A A A R G + Sbjct: 945 AKLDVTNRVEAAALAHRLGLL 965 >gi|256392814|ref|YP_003114378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359040|gb|ACU72537.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 525 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +R + LT RE L+L G ++ EIAE+L +S TV+ ++ K NR Sbjct: 450 HRATRRPAWPGGLTRREVQVLRLLARGLSNGEIAEQLVISRKTVSHHVEHIYAKTGTANR 509 Query: 222 IQAIAKAIRFGY 233 A A+R G Sbjct: 510 AMAGLYAVRHGL 521 >gi|21219837|ref|NP_625616.1| multidomain-containing protein family [Streptomyces coelicolor A3(2)] gi|8977921|emb|CAB95788.1| putative multi-domain regulatory protein [Streptomyces coelicolor A3(2)] Length = 780 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 40/122 (32%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 + + + LG + + L +I+ Sbjct: 649 LWGVRALSAQHTQVENTLMLGLGAERFTQVYTFGTRLPVPQLIDVACGNAHADDAAPPRH 708 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 S LT RE L G+G T+ +IAE+L +S T + ++ KL +R Q Sbjct: 709 PHDGSPLGPLTPREREVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQI 768 Query: 225 IA 226 A Sbjct: 769 AA 770 >gi|16131392|ref|NP_417977.1| predicted two-component system response regulator, LuxR-like HTH domain, function unknown [Escherichia coli str. K-12 substr. MG1655] gi|74314226|ref|YP_312645.1| putative regulator [Shigella sonnei Ss046] gi|82545884|ref|YP_409831.1| regulator [Shigella boydii Sb227] gi|89110493|ref|AP_004273.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli str. K-12 substr. W3110] gi|157155556|ref|YP_001464990.1| LuxR family transcriptional regulator [Escherichia coli E24377A] gi|157162999|ref|YP_001460317.1| LuxR family transcriptional regulator [Escherichia coli HS] gi|170018251|ref|YP_001723205.1| two component LuxR family transcriptional regulator [Escherichia coli ATCC 8739] gi|170083031|ref|YP_001732351.1| DNA-binding response regulator in two-component regulatory system [Escherichia coli str. K-12 substr. DH10B] gi|187732835|ref|YP_001882209.1| LuxR family transcriptional regulator [Shigella boydii CDC 3083-94] gi|188493563|ref|ZP_03000833.1| transcriptional regulator, LuxR family [Escherichia coli 53638] gi|191165327|ref|ZP_03027170.1| transcriptional regulator, LuxR family [Escherichia coli B7A] gi|193068515|ref|ZP_03049477.1| transcriptional regulator, LuxR family [Escherichia coli E110019] gi|194431218|ref|ZP_03063511.1| transcriptional regulator, LuxR family [Shigella dysenteriae 1012] gi|194435746|ref|ZP_03067849.1| transcriptional regulator, LuxR family [Escherichia coli 101-1] gi|218556070|ref|YP_002388983.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli IAI1] gi|218697229|ref|YP_002404896.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli 55989] gi|218702285|ref|YP_002409914.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli IAI39] gi|238902609|ref|YP_002928405.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli BW2952] gi|253771649|ref|YP_003034480.1| LuxR family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038698|ref|ZP_04872754.1| transcriptional regulator [Escherichia sp. 1_1_43] gi|254163442|ref|YP_003046550.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli B str. REL606] gi|260857624|ref|YP_003231515.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli O26:H11 str. 11368] gi|260870246|ref|YP_003236648.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli O111:H- str. 11128] gi|291284892|ref|YP_003501710.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli O55:H7 str. CB9615] gi|293416965|ref|ZP_06659602.1| HTH-type transcriptional regulator yhjB [Escherichia coli B185] gi|293453825|ref|ZP_06664244.1| HTH-type transcriptional regulator yhjB [Escherichia coli B088] gi|297516998|ref|ZP_06935384.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli OP50] gi|300815266|ref|ZP_07095491.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300822085|ref|ZP_07102228.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300907585|ref|ZP_07125221.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300916753|ref|ZP_07133464.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1] gi|300922344|ref|ZP_07138466.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1] gi|300927986|ref|ZP_07143543.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1] gi|300950857|ref|ZP_07164739.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300955003|ref|ZP_07167413.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|301028224|ref|ZP_07191493.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|301306826|ref|ZP_07212876.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|301326665|ref|ZP_07219992.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1] gi|301646057|ref|ZP_07245962.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|307140209|ref|ZP_07499565.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli H736] gi|309796157|ref|ZP_07690568.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|331644228|ref|ZP_08345357.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli H736] gi|331655145|ref|ZP_08356144.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli M718] gi|331659827|ref|ZP_08360765.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli TA206] gi|331665140|ref|ZP_08366041.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli TA143] gi|331679596|ref|ZP_08380266.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli H591] gi|331685175|ref|ZP_08385761.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli H299] gi|586682|sp|P37640|YHJB_ECOLI RecName: Full=Putative HTH-type transcriptional regulator yhjB gi|466657|gb|AAB18496.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655] gi|1789937|gb|AAC76545.1| predicted two-component system response regulator, LuxR-like HTH domain, function unknown [Escherichia coli str. K-12 substr. MG1655] gi|73857703|gb|AAZ90410.1| putative regulator [Shigella sonnei Ss046] gi|81247295|gb|ABB68003.1| putative regulator [Shigella boydii Sb227] gi|85676524|dbj|BAE77774.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli str. K12 substr. W3110] gi|157068679|gb|ABV07934.1| transcriptional regulator, LuxR family [Escherichia coli HS] gi|157077586|gb|ABV17294.1| transcriptional regulator, LuxR family [Escherichia coli E24377A] gi|169753179|gb|ACA75878.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|169890866|gb|ACB04573.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli str. K-12 substr. DH10B] gi|187429827|gb|ACD09101.1| transcriptional regulator, LuxR family [Shigella boydii CDC 3083-94] gi|188488762|gb|EDU63865.1| transcriptional regulator, LuxR family [Escherichia coli 53638] gi|190904729|gb|EDV64435.1| transcriptional regulator, LuxR family [Escherichia coli B7A] gi|192958166|gb|EDV88607.1| transcriptional regulator, LuxR family [Escherichia coli E110019] gi|194420673|gb|EDX36749.1| transcriptional regulator, LuxR family [Shigella dysenteriae 1012] gi|194425289|gb|EDX41273.1| transcriptional regulator, LuxR family [Escherichia coli 101-1] gi|209755518|gb|ACI76071.1| putative regulator [Escherichia coli] gi|209755524|gb|ACI76074.1| putative regulator [Escherichia coli] gi|218353961|emb|CAV00418.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli 55989] gi|218362838|emb|CAR00468.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli IAI1] gi|218372271|emb|CAR20134.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli IAI39] gi|226839204|gb|EEH71227.1| transcriptional regulator [Escherichia sp. 1_1_43] gi|238862250|gb|ACR64248.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli BW2952] gi|242379039|emb|CAQ33838.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli BL21(DE3)] gi|253322693|gb|ACT27295.1| transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975343|gb|ACT41014.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli B str. REL606] gi|253979499|gb|ACT45169.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli BL21(DE3)] gi|257756273|dbj|BAI27775.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli O26:H11 str. 11368] gi|257766602|dbj|BAI38097.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli O111:H- str. 11128] gi|260447465|gb|ACX37887.1| transcriptional regulator, LuxR family [Escherichia coli DH1] gi|290764765|gb|ADD58726.1| Putative HTH-type transcriptional regulator yhjB [Escherichia coli O55:H7 str. CB9615] gi|291321951|gb|EFE61382.1| HTH-type transcriptional regulator yhjB [Escherichia coli B088] gi|291431541|gb|EFF04526.1| HTH-type transcriptional regulator yhjB [Escherichia coli B185] gi|299878710|gb|EFI86921.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|300318045|gb|EFJ67829.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|300400702|gb|EFJ84240.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300415975|gb|EFJ99285.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1] gi|300421284|gb|EFK04595.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1] gi|300449833|gb|EFK13453.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300463993|gb|EFK27486.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1] gi|300525448|gb|EFK46517.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300532158|gb|EFK53220.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300837945|gb|EFK65705.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|300846669|gb|EFK74429.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1] gi|301075728|gb|EFK90534.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|308120218|gb|EFO57480.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|309703926|emb|CBJ03267.1| transcriptional regulator [Escherichia coli ETEC H10407] gi|315138096|dbj|BAJ45255.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli DH1] gi|315252577|gb|EFU32545.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1] gi|315295796|gb|EFU55113.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3] gi|320182580|gb|EFW57470.1| Putative regulator [Shigella boydii ATCC 9905] gi|320183472|gb|EFW58321.1| Putative regulator [Shigella flexneri CDC 796-83] gi|320639836|gb|EFX09430.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli O157:H7 str. G5101] gi|320645336|gb|EFX14352.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli O157:H- str. 493-89] gi|320650647|gb|EFX19113.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli O157:H- str. H 2687] gi|320655841|gb|EFX23764.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661623|gb|EFX29038.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli O55:H7 str. USDA 5905] gi|320666646|gb|EFX33629.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli O157:H7 str. LSU-61] gi|323154025|gb|EFZ40231.1| bacterial regulatory s, luxR family protein [Escherichia coli EPECa14] gi|323174168|gb|EFZ59796.1| transcriptional regulator, LuxR family protein [Escherichia coli LT-68] gi|323179531|gb|EFZ65098.1| transcriptional regulator, LuxR family [Escherichia coli 1180] gi|323182990|gb|EFZ68391.1| transcriptional regulator, LuxR family protein [Escherichia coli 1357] gi|323939500|gb|EGB35709.1| luxR family protein regulatory protein [Escherichia coli E482] gi|323944483|gb|EGB40556.1| luxR family protein Bacterial regulatory protein [Escherichia coli H120] gi|323971378|gb|EGB66617.1| luxR family protein regulatory protein [Escherichia coli TA007] gi|323975078|gb|EGB70187.1| luxR family protein regulatory protein [Escherichia coli TW10509] gi|324116609|gb|EGC10526.1| luxR family protein regulatory protein [Escherichia coli E1167] gi|331036522|gb|EGI08748.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli H736] gi|331047160|gb|EGI19238.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli M718] gi|331053042|gb|EGI25075.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli TA206] gi|331057650|gb|EGI29636.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli TA143] gi|331072768|gb|EGI44093.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli H591] gi|331077546|gb|EGI48758.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli H299] gi|332084020|gb|EGI89227.1| transcriptional regulator, LuxR family [Shigella dysenteriae 155-74] gi|332084586|gb|EGI89780.1| transcriptional regulator, LuxR family [Shigella boydii 5216-82] gi|332095823|gb|EGJ00831.1| transcriptional regulator, LuxR family [Shigella boydii 3594-74] gi|332345483|gb|AEE58817.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 200 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|84497905|ref|ZP_00996702.1| regulatory protein, LuxR:Response regulator receiver [Janibacter sp. HTCC2649] gi|84381405|gb|EAP97288.1| regulatory protein, LuxR:Response regulator receiver [Janibacter sp. HTCC2649] Length = 218 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 1/105 (0%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAG 186 + + G Q+I + + + S L++RE LQL G Sbjct: 104 DFPAQQIIESLRLAHRGQALIPLGMSSQLIRELSQPRQTPGESTTPRLSDRELGVLQLVG 163 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G ++EIA +L +S +TV ++ + KL+ +RI+ Sbjct: 164 QGKGNKEIAAQLFISQNTVKNHIQNIRNKLNVGSRIELAMHGAEQ 208 >gi|315502130|ref|YP_004081017.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315408749|gb|ADU06866.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 220 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 32/84 (38%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ LT RE L G G ++ EI + L LS T Y+ Sbjct: 132 AVTRRVLAAAARSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQALFLSPDTARTYVS 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+A +R Q + A G + Sbjct: 192 RLLQKLNARDRAQLVVIAYESGLV 215 >gi|153800849|ref|ZP_01955435.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3] gi|124123559|gb|EAY42302.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + + I E+ L RL F I + G Sbjct: 40 FHALTQAE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + S+ + V C + + ++ LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLAELTKREVEVFDLL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 157 VKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205 >gi|77457134|ref|YP_346639.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf0-1] gi|77381137|gb|ABA72650.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 850 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Query: 143 NEVIIEAHGACYQV-----ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +++ E + C ++ I + E ++S+ L++RE LQL G ++ +IAEK Sbjct: 754 QQMLAELYIRCVEMPSRWRIDEAAEQVDEQSTTINPLSQRELKVLQLIAFGDSNLQIAEK 813 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S+HTV ++ KL R QA+AKA Sbjct: 814 LFISLHTVKTHVRRIHSKLGVERRTQAVAKAKLLNL 849 >gi|51894231|ref|YP_076922.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857920|dbj|BAD42078.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 211 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 +A + ++ + L ++ + ++L GYT+ EIA Sbjct: 114 RSIRAVARGEVAMDPKVVGYLMQQMRSPSADKEERI-PLNRQQLAIIRLVAQGYTNREIA 172 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E++ LS TV YL A ++ NR++A A + G+I Sbjct: 173 ERMFLSEKTVKGYLAEAMRRMGVKNRVEAAMVASKNGWI 211 >gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0101] Length = 248 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ T RE S LQL +G ++EIA +L S+ V Y+ K +R + Sbjct: 178 KQSAAVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTEL 237 Query: 225 IAKAIRFGYI 234 + A+ G + Sbjct: 238 VRYALEHGLV 247 >gi|297162504|gb|ADI12216.1| LuxR family two-component response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 157 ITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + L L+ RE L L G+G T+ EI ++L LS TV ++ Sbjct: 130 LMSTLRGESAEPQPRDESLAGLSTREREILTLIGEGMTNREIGKRLYLSEKTVKNHISRL 189 Query: 213 TVKLDAVNRIQAIAKA 228 KL R+QA A Sbjct: 190 LSKLGVERRVQAAVIA 205 >gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606] Length = 319 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|218707313|ref|YP_002414832.1| DNA-binding transcriptional activator UhpA [Escherichia coli UMN026] gi|293407309|ref|ZP_06651231.1| DNA-binding transcriptional activator UhpA [Escherichia coli FVEC1412] gi|298383051|ref|ZP_06992646.1| transcriptional regulatory protein uhpA [Escherichia coli FVEC1302] gi|331665313|ref|ZP_08366214.1| transcriptional regulatory protein UhpA [Escherichia coli TA143] gi|218434410|emb|CAR15338.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Escherichia coli UMN026] gi|291425600|gb|EFE98636.1| DNA-binding transcriptional activator UhpA [Escherichia coli FVEC1412] gi|298276887|gb|EFI18405.1| transcriptional regulatory protein uhpA [Escherichia coli FVEC1302] gi|331057823|gb|EGI29809.1| transcriptional regulatory protein UhpA [Escherichia coli TA143] Length = 196 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|182437063|ref|YP_001824782.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777678|ref|ZP_08236943.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465579|dbj|BAG20099.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658011|gb|EGE42857.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +A + +I + + + LT RET +L G T+ EI + Sbjct: 119 RAAMAGDTLISPSLTVSLLRHHRDAGRPRAAEPLDALTGRETEIARLVAKGMTNAEIGAE 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S T ++ + KLD NR+ A G Sbjct: 179 LFISAGTAKTHVANVQRKLDVRNRVGIAAWIWGNGL 214 >gi|126651238|ref|ZP_01723448.1| probable transcriptional regulator, luxR family protein [Bacillus sp. B14905] gi|126592076|gb|EAZ86142.1| probable transcriptional regulator, luxR family protein [Bacillus sp. B14905] Length = 830 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Query: 163 LFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L + + A+ LT+RE L DG T+ EIA++L LS TV YL + KL Sbjct: 760 LKEGTAFPAKAPSMLTQREKDIYDLLVDGITNREIAKRLHLSEGTVRVYLSTIYSKLGVN 819 Query: 220 NRIQAIAK 227 +R +AIA Sbjct: 820 SRAKAIAL 827 >gi|126348327|emb|CAJ90048.1| putative two component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 221 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 ++I +F K+ ++A LTERE + L G G ++EEIA +L +S T ++ Sbjct: 134 RLIAEFAARSKEPAAAGELARLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRT 193 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 VKL A +R Q + A G + Sbjct: 194 MVKLGARDRAQLVVLAYESGLV 215 >gi|146311212|ref|YP_001176286.1| DNA-binding transcriptional regulator CsgD [Enterobacter sp. 638] gi|145318088|gb|ABP60235.1| response regulator receiver protein [Enterobacter sp. 638] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGSSNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|17233032|ref|NP_490122.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|17135554|dbj|BAB78100.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 255 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 27/182 (14%) Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 + + P+ + + ++ + AG P+ Sbjct: 63 SIEHNPIAHYLVERHAPVHEALVM----SPKAWKVICPRQDHWHVMAG---PIINRNQIV 115 Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARN-------------- 173 G V T E M A + + + C + + + ++ A++ Sbjct: 116 GVVGCTREKSMPAFDTQNLTDLSSICLHLSVWAATVDSQSTATAKSHHYPFQSDACGGLR 175 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA--KAI 229 LT RE QL G T+ EI +L ++ ++V L KL +R + +A A Sbjct: 176 QHLTPRELQIAQLVALGLTNAEIGHQLWITENSVKQALKRMFRKLKVSSRAEMVAQLLAR 235 Query: 230 RF 231 + Sbjct: 236 KH 237 >gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] Length = 201 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 36/75 (48%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + L+ERE L + G TS EIA LGLS TV+ ++ +A KL Sbjct: 125 ARRPRTHTAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVA 184 Query: 220 NRIQAIAKAIRFGYI 234 RI+A+ +A G I Sbjct: 185 TRIEAVVRASSSGII 199 >gi|289772962|ref|ZP_06532340.1| multidomain-containing protein family [Streptomyces lividans TK24] gi|289703161|gb|EFD70590.1| multidomain-containing protein family [Streptomyces lividans TK24] Length = 780 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 40/122 (32%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 + + + LG + + L +I+ Sbjct: 649 LWGVRALSAQHTQVENTLMLGLGAERFTQVYTFGTRLPVPQLIDVACGNAHADDAAPPRH 708 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 S LT RE L G+G T+ +IAE+L +S T + ++ KL +R Q Sbjct: 709 PHDGSPLGPLTPREREVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQI 768 Query: 225 IA 226 A Sbjct: 769 AA 770 >gi|305680225|ref|ZP_07403033.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659756|gb|EFM49255.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EIA +L +S TV ++ + K+ A +R+ A + G Sbjct: 157 LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDRVALAIIARKVGL 216 >gi|237730973|ref|ZP_04561454.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2] gi|226906512|gb|EEH92430.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|116070777|ref|ZP_01468046.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116066182|gb|EAU71939.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 228 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E + A + + L + + LT RE L G T +EIAE L +S Sbjct: 136 EAAVLAVMGHHSYRSPSLRGGELPYLSCPRLTPREYEVLDRLARGMTDKEIAEALVVSEQ 195 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T Y L+ NR+QA+ K +R G + Sbjct: 196 TARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226 >gi|94500129|ref|ZP_01306663.1| regulatory protein, LuxR [Oceanobacter sp. RED65] gi|94427702|gb|EAT12678.1| regulatory protein, LuxR [Oceanobacter sp. RED65] Length = 753 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 3/162 (1%) Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D+ L H + I S L + F G R F + Sbjct: 585 LRDELLKHDYHVRALVAEAQIIVAHWYLGKRARSKILLKQAVQFYGWLLFNRTLFDEAPL 644 Query: 132 VIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +I L+ E+ + + ++ LT +E L L G Sbjct: 645 IIPILSNLISMGELQPSKQYLSTYRNILFPRYATDADDITARYNELTNKEKEVLMLLAQG 704 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +++EIA+ + ++ T+ +L + KL +R A+A R Sbjct: 705 LSNQEIADDMAVAATTIKWHLKNIYRKLSLDSRSAAVAYMHR 746 >gi|322833700|ref|YP_004213727.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321168901|gb|ADW74600.1| two component transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 218 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 ++ + A Q+ ++ + + +L+ERE + + G EI+E+L Sbjct: 116 RLVDSGQRYIASDIAQQM--ALSQIEPQSETPFDSLSERELQIMLMITKGQKVNEISEQL 173 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS TVN+Y KL+ ++ AIR G Sbjct: 174 NLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208 >gi|297537662|ref|YP_003673431.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257009|gb|ADI28854.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 219 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S ++T RE L+L +G+ ++ IA L +SV T+ + + KLD N Sbjct: 150 TSTWDSITLREREVLKLIAEGHPNKFIANYLCVSVKTIEKHRSNLMKKLDMHNAASLAVF 209 Query: 228 AIRFGYI 234 AI G I Sbjct: 210 AIEKGLI 216 >gi|227833142|ref|YP_002834849.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182367|ref|ZP_06041788.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227454158|gb|ACP32911.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 202 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + +A + + D + L++RE +L G S +IA + Sbjct: 106 DTPPDELADAIRRVHSGLRVIDPQLAQDILFTPDNPLSDREAEVCRLLLRGLGSADIASQ 165 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV ++ + K A NR +A +A G+I Sbjct: 166 LHLSGGTVRNHVSAIMAKTRAGNRFEAARRAEANGWI 202 >gi|225022240|ref|ZP_03711432.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii ATCC 33806] gi|224944963|gb|EEG26172.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii ATCC 33806] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EIA +L +S TV ++ + K+ A +R+ A + G Sbjct: 157 LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDRVALAIIARKVGL 216 >gi|31790496|emb|CAD56673.1| putative regulatory protein [Citrobacter freundii] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|15601439|ref|NP_233070.1| transcriptional regulator UhpA [Vibrio cholerae O1 biovar eltor str. N16961] gi|121585560|ref|ZP_01675356.1| transcriptional regulatory protein UhpA [Vibrio cholerae 2740-80] gi|153818102|ref|ZP_01970769.1| transcriptional regulator UhpA [Vibrio cholerae NCTC 8457] gi|153820706|ref|ZP_01973373.1| transcriptional regulator UhpA [Vibrio cholerae B33] gi|227812249|ref|YP_002812259.1| transcriptional regulator UhpA [Vibrio cholerae M66-2] gi|229506156|ref|ZP_04395665.1| transcriptional regulatory protein UhpA [Vibrio cholerae BX 330286] gi|229509986|ref|ZP_04399466.1| transcriptional regulatory protein UhpA [Vibrio cholerae B33] gi|229516453|ref|ZP_04405900.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC9] gi|229605695|ref|YP_002876399.1| transcriptional regulatory protein UhpA [Vibrio cholerae MJ-1236] gi|254849842|ref|ZP_05239192.1| transcriptional regulatory protein UhpA [Vibrio cholerae MO10] gi|255746549|ref|ZP_05420496.1| transcriptional regulatory protein UhpA [Vibrio cholera CIRS 101] gi|262158861|ref|ZP_06029974.1| transcriptional regulatory protein UhpA [Vibrio cholerae INDRE 91/1] gi|298499483|ref|ZP_07009289.1| transcriptional regulatory protein UhpA [Vibrio cholerae MAK 757] gi|9658099|gb|AAF96582.1| transcriptional regulator UhpA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550177|gb|EAX60191.1| transcriptional regulatory protein UhpA [Vibrio cholerae 2740-80] gi|126511370|gb|EAZ73964.1| transcriptional regulator UhpA [Vibrio cholerae NCTC 8457] gi|126521749|gb|EAZ78972.1| transcriptional regulator UhpA [Vibrio cholerae B33] gi|227011391|gb|ACP07602.1| transcriptional regulator UhpA [Vibrio cholerae M66-2] gi|229346334|gb|EEO11305.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC9] gi|229352431|gb|EEO17371.1| transcriptional regulatory protein UhpA [Vibrio cholerae B33] gi|229356507|gb|EEO21425.1| transcriptional regulatory protein UhpA [Vibrio cholerae BX 330286] gi|229372181|gb|ACQ62603.1| transcriptional regulatory protein UhpA [Vibrio cholerae MJ-1236] gi|254845547|gb|EET23961.1| transcriptional regulatory protein UhpA [Vibrio cholerae MO10] gi|255736303|gb|EET91701.1| transcriptional regulatory protein UhpA [Vibrio cholera CIRS 101] gi|262029434|gb|EEY48085.1| transcriptional regulatory protein UhpA [Vibrio cholerae INDRE 91/1] gi|297541464|gb|EFH77515.1| transcriptional regulatory protein UhpA [Vibrio cholerae MAK 757] Length = 208 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGYVIFTSEFLM 140 + I E+ L RL F I + G + S+ Sbjct: 48 VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGAQGYLSKRCG 107 Query: 141 LA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V C + + ++ +LT+RE L G +EI Sbjct: 108 PSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLLVQGKEVKEI 165 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A+ L LS TV+ + + KL+ N + I A++ + Sbjct: 166 AQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHQLL 205 >gi|330720530|gb|EGG98815.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [gamma proteobacterium IMCC2047] Length = 238 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ +L+ R+ L L G +++ IAE+LGL+ TV ++ KL+ NR +A+AK Sbjct: 169 AAQISSLSRRQLEVLGLIISGKSNQAIAEELGLTTPTVKMHVSGIFKKLNVSNRTEAVAK 228 >gi|294677045|ref|YP_003577660.1| LuxR family two component transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475865|gb|ADE85253.1| two component transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 206 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 38/83 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A V F L ++ LT RET L+ G T++EIA ++ L TV ++ Sbjct: 123 MASGSVFAPFDFLKQEEPPVQGGLTARETEVLRGICAGRTNKEIAREMDLQEVTVKLHVR 182 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + T K+ A NR A A G+ Sbjct: 183 TLTRKIGARNRTHAAMIARENGW 205 >gi|291300164|ref|YP_003511442.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569384|gb|ADD42349.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ LT+RE + L DG ++ +IA +L L V TV ++ + KL+ NR Sbjct: 141 RRQSADTALIDTLTDRERAVLVHLADGLSNADIAARLYLGVGTVKDHVSAILAKLEVANR 200 Query: 222 IQAIAKAIRFGYI 234 +QA A R G + Sbjct: 201 VQAALLAERAGLL 213 >gi|312195736|ref|YP_004015797.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227072|gb|ADP79927.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 216 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 37/123 (30%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + ++ + + A + Sbjct: 93 RAGARGYVTKTISADELADAVERVAGGDVVFSPRLAGFVLDAFRDASNAPPAAAAAPDAD 152 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L GY +EIA +L +SV TV + + KL +R Q A Sbjct: 153 FDQLTPREREVLRLLARGYAYKEIAAELFISVKTVETHASNVLRKLRLSSRHQLTRWAAD 212 Query: 231 FGY 233 Sbjct: 213 RRI 215 >gi|209863940|gb|ACI88885.1| AlnR6 two component response regulator [Streptomyces sp. CM020] Length = 218 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYT 190 + + + +I A G ++I F + A LT RE L G++ Sbjct: 113 AGIRAVASGDAVI-APGLTRKLIDAFSAHLPGTTPAQDRQLTALTTREREVLTAIATGWS 171 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA + L+ TV +++ K+ A +R+QA+ A G + Sbjct: 172 NTEIANRFSLAESTVKSHVSHILAKIGARDRVQAVIFAYDMGLV 215 >gi|71065169|ref|YP_263896.1| nitrate/nitrite response regulator [Psychrobacter arcticus 273-4] gi|71038154|gb|AAZ18462.1| nitrate/nitrite response regulator, possibly NarL [Psychrobacter arcticus 273-4] Length = 219 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A +LT RE +Q+ +G +++ IA KL ++ TV ++ K R+ A Sbjct: 156 AGSLTGRELQVIQMIAEGLSNKMIANKLDIAESTVKVHVKHILNKTGLRTRVDAAVW 212 >gi|60683534|ref|YP_213678.1| transcriptional regulator GerE [Bacteroides fragilis NCTC 9343] gi|60494968|emb|CAH09784.1| putative transcriptional regulator GerE, LuxR family [Bacteroides fragilis NCTC 9343] Length = 278 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 22/181 (12%) Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 + D + + Y + I + + +R+ + Sbjct: 116 HPDDLVEKYVQELRFYH--------------FLKQIPHKKRADYFLMSKLRMRDPSGKYI 161 Query: 117 GIA---FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 I F V + + ++ L + + + +EL K+ S Sbjct: 162 PILHRMFYVATHSNDSMWLALCLYNLSVDPTM---SCRVINSTNGQVIELEKQDCSRL-- 216 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A A Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276 Query: 234 I 234 + Sbjct: 277 L 277 >gi|51594665|ref|YP_068856.1| two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|186893668|ref|YP_001870780.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|51587947|emb|CAH19550.1| putative two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|186696694|gb|ACC87323.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] Length = 210 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + ++ LT RE L+L +G + IA +L +S TV + + KLD Sbjct: 138 LTQGPANTPTVLTPRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVA 197 Query: 223 QAIAKAIRFGY 233 + I + R G Sbjct: 198 ELIHWSYRLGL 208 >gi|323965835|gb|EGB61285.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|327250808|gb|EGE62510.1| transcriptional regulatory protein uhpA [Escherichia coli STEC_7v] Length = 196 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|294139532|ref|YP_003555510.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea DSS12] gi|224613098|dbj|BAH24209.1| regulator protein [Shewanella violacea] gi|293326001|dbj|BAJ00732.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea DSS12] Length = 209 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 14/138 (10%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVITD- 159 L + + V +I ++++E ++V+++ Sbjct: 72 LRQEGVTSRIVILTVSDAKQDVIRLIRAGADGYLLKDTEPDLLLEKLKKAMLGHRVMSES 131 Query: 160 ------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 L+ NLT RE LQL G ++ ++E L +S TV ++ + Sbjct: 132 VENYLYELKDASDEFDWLDNLTPRELQILQLVAQGKSNRTLSEHLHISEGTVKVHVKNLL 191 Query: 214 VKLDAVNRIQAIAKAIRF 231 K +A +R + + ++ Sbjct: 192 RKANAKSRTEMAVRYLKH 209 >gi|297204156|ref|ZP_06921553.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714163|gb|EDY58197.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 232 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 2/130 (1%) Query: 107 RLEGGLL-PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 AG A +R + V V A + + + Sbjct: 93 DDAHPYGALRAGAAGHLREDATADELVAAVRVVAAGDVVVSPGLARALIDAVRNRRAVEN 152 Query: 166 KRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L G ++ EIA++L ++ TV +++ + K+ A R+QA Sbjct: 153 SVPGNRLGTLTGRERDVLTAVASGESNAEIADRLCIAPTTVKSHVSNILTKIGARGRVQA 212 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 213 VVFAYESGLV 222 >gi|289422732|ref|ZP_06424572.1| response regulator [Peptostreptococcus anaerobius 653-L] gi|289156911|gb|EFD05536.1| response regulator [Peptostreptococcus anaerobius 653-L] Length = 199 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LT +E L+ G +++EIA LS TV Y+ KLDA NR Sbjct: 127 ELMDIVINDHSPLTSQEEELLRKVAQGLSNKEIARISYLSDGTVRNYISIILQKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 A+ A +I Sbjct: 187 TDAVRIAQEKNWI 199 >gi|84683702|ref|ZP_01011605.1| Possible LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84668445|gb|EAQ14912.1| Possible LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 203 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 55/221 (24%), Gaps = 24/221 (10%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + +L L + A F I A Y+ D Sbjct: 7 IDDLLSELGGVAP---AGYFLALHIRFAAPL-------MMFQTYNPAWTDHYTRNAYALR 56 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + S W I + G+ Sbjct: 57 DPMVAWGISRSGATRWSDIDLPDPFG-----IMAEAASFGLVYGVCVSC-GPMTSRTVAG 110 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 E + G ++ + + +LT+ E L + G Sbjct: 111 VARGDREFNEEEMSAVTGCVLRLHHE--------TQPPDHLTKAEKQALLVIASGDRYAA 162 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +LG+S A L +A KL A +A+ +A + I Sbjct: 163 GAARLGISESAFKARLSAARRKLFARTTAEALQRAKDYRLI 203 >gi|148252241|ref|YP_001236826.1| two component LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404414|gb|ABQ32920.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 305 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 29/56 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE+ L G T+ +IA+ LGLS TV+ +L KL NR A A A Sbjct: 242 GLTVRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 297 >gi|238796161|ref|ZP_04639672.1| hypothetical protein ymoll0001_5030 [Yersinia mollaretii ATCC 43969] gi|238720106|gb|EEQ11911.1| hypothetical protein ymoll0001_5030 [Yersinia mollaretii ATCC 43969] Length = 211 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + IA++L +S TV + + KLD + I + R G Sbjct: 150 LTPRERQILKLITEGACNRIIADRLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 209 >gi|320333213|ref|YP_004169924.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754502|gb|ADV66259.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 194 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 6/110 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + G + S+ ++ + + D L LT RE L+L Sbjct: 90 SARRAGARAYLSKETPP-QDLARQLRALMDRPFDDHL-----PHVTVPTLTPREGDVLRL 143 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++EIA LG+S TV +L VKLDA +R+ A+ KA G I Sbjct: 144 LADGQSNKEIARSLGVSPETVKEHLARMYVKLDAPDRVSALNKARTLGLI 193 >gi|269957966|ref|YP_003327755.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306647|gb|ACZ32197.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 876 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 38/95 (40%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G + + E +V D + ++ LT RE +LA G Sbjct: 775 AGLAALRASGGAARAGQVHEDARRRLEVWGDEAAAGLRSAAEGAELTAREDEIARLAASG 834 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 T+++IA +L +SV TV +L KL NR + Sbjct: 835 MTNQDIARRLLISVRTVENHLHRVFRKLGVDNRAE 869 >gi|254447404|ref|ZP_05060870.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] gi|198262747|gb|EDY87026.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] Length = 213 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD------FLELFKKRSSAA 171 + +RLG T + L+ + E+++ I + A Sbjct: 91 LQQAIRLGAKGYLLKDVTLDNLLASLELVMAGQSVFDNRINHRTDDVSAASRSQASLGDA 150 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE + ++L +G +++EIA +L L + TV Y+ S +KL +R QA+ K Sbjct: 151 YDLTAREVNIIELMSEGASNKEIAFRLDLKMGTVKNYVSSVLLKLGVRDRTQAVIKIKEE 210 Query: 232 GY 233 G+ Sbjct: 211 GW 212 >gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 233 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L +G ++EIA +LG +V V Y+ K +R + + A+ G + Sbjct: 172 TPREQDVLNLVAEGLMNKEIASRLGTTVRNVEKYVSRLFGKTGTNSRTELVRYALENGLV 231 >gi|120600280|ref|YP_964854.1| two component LuxR family transcriptional regulator [Shewanella sp. W3-18-1] gi|146291788|ref|YP_001182212.1| two component LuxR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120560373|gb|ABM26300.1| two component transcriptional regulator, LuxR family [Shewanella sp. W3-18-1] gi|145563478|gb|ABP74413.1| two component transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] gi|319425025|gb|ADV53099.1| two component transcriptional regulator for nitrate/nitrite response, NarP [Shewanella putrefaciens 200] Length = 209 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153 + + + V ++ ++++E H Sbjct: 69 LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVI 128 Query: 154 YQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + I ++L K + +LT RE LQ +G ++ I+E L +S TV ++ Sbjct: 129 SEEIEEYLYELKNVADEQEWISSLTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K +A +R + + Sbjct: 189 NLLRKANAKSRTEMAVR 205 >gi|194467990|ref|ZP_03073976.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri 100-23] gi|194452843|gb|EDX41741.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri 100-23] Length = 217 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GYT++EIA K+ +S TV A+ KL+ + + + A++ Sbjct: 154 ALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHQ 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|300692972|ref|YP_003753967.1| response regulator, LuxR family [Ralstonia solanacearum PSI07] gi|299080032|emb|CBJ52706.1| putative response regulator, LuxR family [Ralstonia solanacearum PSI07] Length = 210 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182 GYV+ + L + G + + + ++ + LT RE L Sbjct: 98 RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVAPTPVEALTPREHDIL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G++++ IA++LGLSV TV ++ + KL + + + A+ G Sbjct: 158 DGVAQGWSNKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVEVG 207 >gi|297627348|ref|YP_003689111.1| Two component transcriptional regulator, LuxR family [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923113|emb|CBL57700.1| Two component transcriptional regulator, LuxR family [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 220 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 4/99 (4%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + ++ + + E ++ LT+RE L G T+ EI Sbjct: 123 AGDSVVAPSATRRLLDHVAPTLPDHVGEPDER----LDVLTDREREVLVEVAKGATNAEI 178 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A L ++ TV ++G KL +R+ + A G Sbjct: 179 ATNLFMAEGTVKTHIGRLLAKLHCRDRVGLVLFAYETGL 217 >gi|223937111|ref|ZP_03629018.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894133|gb|EEF60587.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 34/57 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A+ L RE L L GY +EI KLGLSV TV Y+ +A K+ +RI+A+AK Sbjct: 148 AKPLAPREEQVLTLLASGYLYKEIGAKLGLSVETVRTYVKNACTKMHVRSRIEAVAK 204 >gi|104781646|ref|YP_608144.1| PAS domain-containing protein [Pseudomonas entomophila L48] gi|95110633|emb|CAK15344.1| putative PAS domain containing response regulator, LuxR family [Pseudomonas entomophila L48] Length = 190 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ E ++ + LT RE +G T +E+A +LG+S TV + Sbjct: 113 ELMIWHFERLDRQPAPTVQLTPREREISLHIVNGLTCKEVARQLGISHRTVEVHRARLMK 172 Query: 215 KLDAVNRIQAIAK 227 KL A N + ++K Sbjct: 173 KLQAKNSAELVSK 185 >gi|325000860|ref|ZP_08121972.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 222 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L+ RE LQL DG +++EI E L LS TV ++L KL +R Q +A A+ Sbjct: 157 TPRELSAREVEVLQLVADGQSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAM 216 Query: 230 RFGYI 234 R G I Sbjct: 217 RAGVI 221 >gi|121603701|ref|YP_981030.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120592670|gb|ABM36109.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 214 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++A LT+RE +L G + +IA +L LS T++ + + K++ N+ + I Sbjct: 143 AAAHEKLTDREFEVFRLIAIGMSVTDIAGRLNLSAKTISTHKANLMQKMNLQNQSELIRY 202 Query: 228 AIRFG 232 AI+ G Sbjct: 203 AIKHG 207 >gi|326330563|ref|ZP_08196870.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] gi|325951638|gb|EGD43671.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 39/84 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+T + + LT RE L +G ++EEIA+ L L V TV ++L Sbjct: 134 RVLREVVTRRRTQPVTAARGSELLTTRELDILLHLAEGMSNEEIAQALVLEVSTVKSHLA 193 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A + G I Sbjct: 194 RMMPKLGVKSRLQAAVWAYQSGLI 217 >gi|317970291|ref|ZP_07971681.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 228 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 3/141 (2%) Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155 + + ++ G A PV V+ ++F+ + Sbjct: 86 DLARKAKALQPQLKVVMLALGDAIPVEHAEASWLEAVVAEADFIEDQKPLEAAVLAVMGH 145 Query: 156 VITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 L + + LT RE L L G T EIAE+L +S T Y Sbjct: 146 HAYRSPSLRSGQLPYLSCPRLTPREYEVLDLLASGLTDREIAEQLVVSEETARTYTKRLL 205 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 L+ NR+QA+ K +R G + Sbjct: 206 KTLEVNNRVQAVLKGMRCGMV 226 >gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1] gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1] Length = 319 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|302531478|ref|ZP_07283820.1| two component system response regulator [Streptomyces sp. AA4] gi|302440373|gb|EFL12189.1| two component system response regulator [Streptomyces sp. AA4] Length = 225 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIA 195 ++ A E ++ + +R +SA R +TERE L L G +++EIA Sbjct: 119 RVVAAGEALLAPTVTRRLIAEIVGRPEHRRIDTSAVREVTEREREVLALVAGGLSNDEIA 178 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S T ++ K+ A +R Q + A G + Sbjct: 179 AHLVISAATARTHVSRIMTKIGARDRAQLVVLAYESGLV 217 >gi|218514343|ref|ZP_03511183.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 113 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + L+L + SA LT RE L L G ++ IA+KL LS +TV ++ + Sbjct: 26 AARNNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYK 82 Query: 215 KLDAVNRIQAIAK 227 K++ NR +A ++ Sbjct: 83 KMNVRNRTEAASR 95 >gi|241664982|ref|YP_002983342.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|240867009|gb|ACS64670.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 214 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCL 182 GYV+ + L + G + + + ++ + LT RE L Sbjct: 102 RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVMPTPVEALTPRERDIL 161 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 GY ++ IA++LGLSV TV ++ + KL + + + A+ G Sbjct: 162 DGIAKGYANKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVELG 211 >gi|323167000|gb|EFZ52739.1| bacterial regulatory s, luxR family protein [Shigella sonnei 53G] Length = 185 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 87 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 146 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 147 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 180 >gi|307546152|ref|YP_003898631.1| LuxR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307218176|emb|CBV43446.1| two component transcriptional regulator, LuxR family [Halomonas elongata DSM 2581] Length = 221 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 40/78 (51%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + + E + + A +LT ++ L + +G +++IA +L +S T+ A++ + Sbjct: 134 AEALGEADEEDTRFAEAIASLTPQQFRVLNMLTEGLLNKQIAFELNVSEATIKAHVTAIL 193 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL +R QA+ A + Sbjct: 194 RKLGVHSRTQAVIAAQKL 211 >gi|325673433|ref|ZP_08153124.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555454|gb|EGD25125.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 306 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 38/239 (15%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGL---- 84 R A+ + ++ +H+Y + Y L + Sbjct: 72 GLRGLAVSESSGLGGHVVARRNPAAVHDYG-----RARTITHHYDGPVLAEGLCSVLAVP 126 Query: 85 -------LPIIWQSIQEETVIESSGQLSV-----------------RLEGGLLPFAGIAF 120 +++ +I+E + + LL A Sbjct: 127 VVVRGNSRAVMYAAIRERVRLGDRIADVMMQAGRRLANEIAIRDEVDRRVALLDAAAAEV 186 Query: 121 PVRLGF-----HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 P G + + + + + ++ R + L+ Sbjct: 187 PAPGGADAEEIRDVHAELRSIAQTVDDPALQEQLRALSNRLAGVGAADDTDRPTPPVALS 246 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L A G ++ IAE+L + TV +YL SA KLDA +R +A+ A R G + Sbjct: 247 PREVDVLSHAALGCSNVVIAERLSVKPETVKSYLRSAMSKLDAHSRREAVVAARRLGLL 305 >gi|228949758|ref|ZP_04111975.1| Response regulator receiver [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809915|gb|EEM56319.1| Response regulator receiver [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 503 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLE--LFKKRSSAAR-N 173 +R G S L + ++ H +++ + E LF+ +S Sbjct: 382 IRNGADGYVLKSIDSRELAESIRLVYRGSTMITHDLFHRMWEENEETGLFESQSDGIEYG 441 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + IA L LS TV Y + KL NR +A+ KA G Sbjct: 442 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 501 Query: 234 I 234 + Sbjct: 502 L 502 >gi|312972209|ref|ZP_07786383.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] gi|310334586|gb|EFQ00791.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] Length = 196 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 98 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 158 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191 >gi|302522670|ref|ZP_07275012.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78] gi|318057801|ref|ZP_07976524.1| response regulator [Streptomyces sp. SA3_actG] gi|302431565|gb|EFL03381.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78] Length = 290 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G + + + E G C ++ + R + A LT RE L + Sbjct: 184 RDTGAHLRGLADRLTDPALRAELLGVCARL--AAADAGPPRGAQAPPLTPREVEVLVIVA 241 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ +A +LGL TV AYL +A KL A R +A+A A R G + Sbjct: 242 EGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGVV 289 >gi|256025755|ref|ZP_05439620.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia sp. 4_1_40B] Length = 200 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|239985867|ref|ZP_04706531.1| two component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 221 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ ++AA LTERE + L G G ++EEIA +L +S T + Sbjct: 130 GVTRRLIAEFAARSKEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|254502437|ref|ZP_05114588.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222438508|gb|EEE45187.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 203 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 3/114 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERE 178 P+ + +NG F + E ++E + LT RE Sbjct: 89 IPLAVEAIRNGAHDFI--EKPFSAESVLERVREGINAMKQRQSSDDGMQFEGVDLLTRRE 146 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ DG +++E LG+S TV + KL A N + + + G Sbjct: 147 LEVLKEITDGASNKEAGRTLGISPRTVEVHRARIMEKLGARNAAELVRIVLGHG 200 >gi|114799510|ref|YP_759982.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114739684|gb|ABI77809.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 213 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + + + I D L ++ +LT RE L L G G + E+A L LS Sbjct: 119 ADGVPALSPSIARRIMDHFRL-TGPAAPDDDLTARERDVLALIGRGMRNGEVARALDLSE 177 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +TV +Y+ KL +R +A A R G Sbjct: 178 NTVASYIKGIYRKLGISSRAEASWHATRMGL 208 >gi|111022138|ref|YP_705110.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821668|gb|ABG96952.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 222 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 151 GACYQVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 G V+ ++ + + A LTERET L+ G ++++IA KL LS TV Sbjct: 135 GLAGLVLGEYRRMSSAPADEQGLAVPRLTERETEVLRFVAKGLSAKQIATKLSLSHRTVE 194 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL NR++ AI G Sbjct: 195 NHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|91228457|ref|ZP_01262381.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269966819|ref|ZP_06180892.1| Transcriptional regulator [Vibrio alginolyticus 40B] gi|91187992|gb|EAS74300.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269828486|gb|EEZ82747.1| Transcriptional regulator [Vibrio alginolyticus 40B] Length = 209 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 142 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 201 Query: 226 AK 227 Sbjct: 202 IM 203 >gi|313677708|ref|YP_004055704.1| ATP-dependent transcriptional regulator, malt-like, luxr family [Marivirga tractuosa DSM 4126] gi|312944406|gb|ADR23596.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Marivirga tractuosa DSM 4126] Length = 548 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L A T++EIA+K+ +SV+TV +L + KL NR + I A+ Sbjct: 485 PLSTREIEVLTYALSDLTNQEIADKVFVSVNTVKFHLKNIYEKLGVSNRKEVIKFAL 541 >gi|294633266|ref|ZP_06711825.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] gi|292831047|gb|EFF89397.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] Length = 230 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFL--ELFKKRSSAARN 173 + G L+ A + +++ + +++ A Sbjct: 104 SIMAGASGYVLKQIQGSDLVSAVRTVARGQSLLDPSATTKLMARLRGGQQQEEQPDALPG 163 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L L G+G T+ +I ++L L+ TV ++ KL RIQA A + Sbjct: 164 LTEREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 221 >gi|256789068|ref|ZP_05527499.1| multidomain-containing protein family [Streptomyces lividans TK24] Length = 772 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 40/122 (32%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 + + + LG + + L +I+ Sbjct: 641 LWGVRALSAQHTQVENTLMLGLGAERFTQVYTFGTRLPVPQLIDVACGNAHADDAAPPRH 700 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 S LT RE L G+G T+ +IAE+L +S T + ++ KL +R Q Sbjct: 701 PHDGSPLGPLTPREREVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQI 760 Query: 225 IA 226 A Sbjct: 761 AA 762 >gi|258650739|ref|YP_003199895.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553964|gb|ACV76906.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 215 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 E+ + L+ERE L+ G + ++A++L + TV + KL Sbjct: 140 AQEIRLRAQPTGPVLSERELQVLRGFARGQSIPQLAKELYIGASTVKTHTQRLYEKLGVS 199 Query: 220 NRIQAIAKAIRFGYI 234 +R A+A+A+R G + Sbjct: 200 DRAAAVAEAMRRGLL 214 >gi|297198347|ref|ZP_06915744.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714401|gb|EDY58435.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 209 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 GY++ LA V A G T L + L+ RET+ L+ Sbjct: 98 AGAAGYLLKDLPRAELARSVRAAARGETVLAPTVAARLVDQLRTRPERPRLSARETAVLR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG T+ EI +L + TV +L KL +R A+ A+RFG + Sbjct: 158 LVADGCTNAEIGRRLYIGESTVKTHLLRVFGKLGVDDRTAAVTSAMRFGLL 208 >gi|91787753|ref|YP_548705.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696978|gb|ABE43807.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 270 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 167 RSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 RS+ + L+ERET + G T+ EI L +S TV ++ KL+ NR QA Sbjct: 200 RSAPEDSCGLSERETQIMAWVAMGKTNSEIGTILNISGFTVKNHMQRIFQKLNVFNRTQA 259 Query: 225 IAKAIR 230 ++K R Sbjct: 260 VSKVTR 265 >gi|148262835|ref|YP_001229541.1| two component LuxR family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396335|gb|ABQ24968.1| two component transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 217 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL--FKKRSSAARNLTE 176 GY++ + V A G V +F L ++ LT Sbjct: 98 AGARGYLLKDGSGDDVVAAVRSVAQGGVILPPDMASLVFEEFRRLAGDEQDGVPDERLTP 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L G + +IA L ++ TV L KL NR QA A+R G+ Sbjct: 158 GEMDVLLRIAQGDDNRQIAAALNVTTKTVANRLSEIFSKLHVKNRTQAALTALRKGW 214 >gi|313149427|ref|ZP_07811620.1| response regulator receiver protein [Bacteroides fragilis 3_1_12] gi|313138194|gb|EFR55554.1| response regulator receiver protein [Bacteroides fragilis 3_1_12] Length = 251 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A A Sbjct: 190 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 249 Query: 234 I 234 + Sbjct: 250 L 250 >gi|301165031|emb|CBW24597.1| putative transcriptional regulator GerE, LuxR family [Bacteroides fragilis 638R] Length = 278 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A A Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276 Query: 234 I 234 + Sbjct: 277 L 277 >gi|265767479|ref|ZP_06095145.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16] gi|263252784|gb|EEZ24296.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16] Length = 278 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A A Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276 Query: 234 I 234 + Sbjct: 277 L 277 >gi|255011592|ref|ZP_05283718.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 278 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A A Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276 Query: 234 I 234 + Sbjct: 277 L 277 >gi|254496316|ref|ZP_05109202.1| two-component response regulator [Legionella drancourtii LLAP12] gi|254354477|gb|EET13126.1| two-component response regulator [Legionella drancourtii LLAP12] Length = 212 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + +LTERE + L +G ++EIA +L +S+ TV A+ + K+ A N Sbjct: 131 EYINERINSLTERERQIIDLISEGKLNKEIAYELTISISTVEAHRANIMRKMQAKNLAHL 190 Query: 225 IAKAIRFGY 233 I + + Sbjct: 191 IKLYYKSQW 199 >gi|253566600|ref|ZP_04844053.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5] gi|251944772|gb|EES85247.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5] Length = 278 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A A Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276 Query: 234 I 234 + Sbjct: 277 L 277 >gi|291302684|ref|YP_003513962.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571904|gb|ADD44869.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+S R L+ RE+ L G ++ EI +L ++ TV + KL A +R A+A Sbjct: 66 RTSIQRGLSARESQVLLAIASGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVA 125 Query: 227 KAIRFGYI 234 +A R G + Sbjct: 126 EAFRVGIL 133 >gi|226366040|ref|YP_002783823.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226244530|dbj|BAH54878.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 287 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 41/108 (37%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + + + G ++ LT RE L Sbjct: 179 RDIHAELRSVAQTVTDTSLQARLRGLSQRLAGILRPDAVADEDPGVRLTPREIDVLSHVA 238 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E A++L + TV +YL SA KLDA +R +A+ A R G + Sbjct: 239 LGCTNGEAAQRLSVGPETVKSYLRSAMSKLDARSRHEAVVTARRLGLL 286 >gi|260642682|ref|ZP_05859490.1| transcriptional regulator, LuxR family domain protein [Bacteroides finegoldii DSM 17565] gi|260621023|gb|EEX43894.1| transcriptional regulator, LuxR family domain protein [Bacteroides finegoldii DSM 17565] Length = 200 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 I++ H + ++ A L+ RE L L G ++EIA+KL +S+ Sbjct: 105 ILKLHQHAHHKGYPVKDMPPMIPPAHHQELLSAREIEVLVLITKGLINKEIADKLNISLT 164 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV + + T KL + A+ GYI Sbjct: 165 TVITHRKNITEKLGIKSVSGLTIYAVMNGYI 195 >gi|118465118|ref|YP_884392.1| two-component system response regulator [Mycobacterium avium 104] gi|118166405|gb|ABK67302.1| two-component system response regulator [Mycobacterium avium 104] Length = 218 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAA-RNLT 175 L G+V+ S L V A +V+T + + AA LT Sbjct: 97 LRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPHGAAIAELT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G G ++ EIA++L +S TV +++G KLD +R AI A G + Sbjct: 157 TRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215 >gi|53715583|ref|YP_101575.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|52218448|dbj|BAD51041.1| putative transcriptional regulator [Bacteroides fragilis YCH46] Length = 278 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A A Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276 Query: 234 I 234 + Sbjct: 277 L 277 >gi|15827939|ref|NP_302202.1| transcriptional regulator [Mycobacterium leprae TN] gi|221230416|ref|YP_002503832.1| putative transcriptional regulator [Mycobacterium leprae Br4923] gi|13093492|emb|CAC30706.1| possible transcriptional regulator [Mycobacterium leprae] gi|219933523|emb|CAR71848.1| possible transcriptional regulator [Mycobacterium leprae Br4923] Length = 1106 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ ++ +LT E + ++L +G +++IA +L +SV TV+ +L KL +R+Q Sbjct: 1038 RKRPTTGWESLTPAEHNVIRLVSEGLDTKDIAARLFVSVRTVHTHLTRIYSKLGLTSRVQ 1097 Query: 224 AIAKAIRF 231 + +A R Sbjct: 1098 LVQEAARH 1105 >gi|302521952|ref|ZP_07274294.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. SPB78] gi|302430847|gb|EFL02663.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. SPB78] Length = 194 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAAR---- 172 L G+++ T+E L V A +++ +F R A Sbjct: 74 LRAGAAGFLLKTAEAGELVAAVRTVAAGDGVVDPAVTRRLLAEFARGGTGRERPAPEGLA 133 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G+G + EIAE++ ++ TV +++ KL NR+QA A G Sbjct: 134 RLTPREREVLSCLGEGLGNAEIAERIDVAEGTVKSHVRRLLAKLGLRNRLQASLLARDLG 193 Query: 233 Y 233 Sbjct: 194 L 194 >gi|297193150|ref|ZP_06910548.1| response regulator receiver protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151658|gb|EDY65235.2| response regulator receiver protein [Streptomyces pristinaespiralis ATCC 25486] Length = 557 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 11/170 (6%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + G + + + + +L R A + + G Sbjct: 388 VMAAAARGSVDLAAGDARSALIALRRAELGWRELDAPYETAHVRMLIGRACRALGDDETA 447 Query: 136 SEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQL 184 L A + E + + A LT RE + L+L Sbjct: 448 GIELEAARVGFERLRAAPDLARLDPFPRDAAAEQAPRHAPAHGPGGVLRLTPREQAVLRL 507 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L +S HTV ++ + KLD +R A A + Sbjct: 508 VAAGKHNREIASELVISEHTVARHIQNIFAKLDVSSRTAASVFAYEHHLV 557 >gi|254513468|ref|ZP_05125533.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium KLH11] gi|221532472|gb|EEE35468.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium KLH11] Length = 204 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +R L++RE L+ G +++EIA L L T+ ++ + KL+A NR QA A Sbjct: 141 SRQLSQREKQVLRGLCRGQSNKEIARALDLQEVTIKLHVRTLCKKLNAKNRTQAALIARD 200 Query: 231 FGY 233 G+ Sbjct: 201 AGF 203 >gi|91774802|ref|YP_544558.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708789|gb|ABE48717.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 244 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L G + EIAE+L LS +TV ++ KL +R +A+ +A Sbjct: 181 ETLSPREGEILGLVAQGMANREIAEQLHLSRYTVECHIKHIYRKLAVSSRTKAVHEARSR 240 Query: 232 GYI 234 G + Sbjct: 241 GLL 243 >gi|317125782|ref|YP_004099894.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589870|gb|ADU49167.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 978 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 43/139 (30%), Gaps = 5/139 (3%) Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQ 155 L++ G + + H A + Sbjct: 836 ERALAMDRRMGAVTHQAETLAAWSRHRARVSGTTAGPSAAGLADEAGALARRIGHWAVLR 895 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + LTERE L+L +G ++ EI E+L LS +T ++ S K Sbjct: 896 DLDTVPAPDAVHPPLPNGLTEREVDVLRLVAEGLSNREIGERLFLSANTAANHVRSILGK 955 Query: 216 LDAVNRIQAIAKAIRFGYI 234 A NR +A A G + Sbjct: 956 TAAPNRTKAAIFATEHGLL 974 >gi|298290097|ref|YP_003692036.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296926608|gb|ADH87417.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 222 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ++ L + +G +++IA +LG+S TV A++ + KL +R QA+ A Sbjct: 150 ARLATLTPQQVRVLMMLSEGLLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVIAA 209 >gi|291485935|dbj|BAI87010.1| hypothetical protein BSNT_05150 [Bacillus subtilis subsp. natto BEST195] Length = 200 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+LA G T+++I +L LS TV Y+ KL A NR +A + A G Sbjct: 139 PLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLHAKNRTEAASIAEEKG 198 Query: 233 YI 234 +I Sbjct: 199 WI 200 >gi|291301112|ref|YP_003512390.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570332|gb|ADD43297.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 155 QVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++I F + LT RE L G T+ EIA +L ++ TV A+L S Sbjct: 135 RLIAAFAQTHTSPPPQPIERLTAREEEVLVSVAQGRTNNEIASELYITQSTVKAHLASLM 194 Query: 214 VKLDAVNRIQAIAKAIRFG 232 KL A NR++ A G Sbjct: 195 RKLGARNRVEVAMWAHETG 213 >gi|207722648|ref|YP_002253084.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] Length = 201 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ KA G Sbjct: 138 PLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAG 197 Query: 233 YI 234 I Sbjct: 198 II 199 >gi|254382674|ref|ZP_04998032.1| two component system response regulator [Streptomyces sp. Mg1] gi|194341577|gb|EDX22543.1| two component system response regulator [Streptomyces sp. Mg1] Length = 233 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A + + LT RE L G +++ IA +L +S TV Sbjct: 141 LIATFLAQGGREERAAATGAHAQQLAALTVREREVLVHVAAGLSNDGIAGRLEVSPLTVK 200 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL A +R Q + A G + Sbjct: 201 THVNRAMAKLGARDRAQLVVIAYESGLV 228 >gi|134099595|ref|YP_001105256.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009580|ref|ZP_06567553.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912218|emb|CAM02331.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 285 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 9/168 (5%) Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 +GDD L + + E+ V+ +++ ++ Sbjct: 126 RQRTHFGDDVLRAAERVVRRVERDIAVEQEVLRRLARMTAPATEP---RTALS---PGEA 179 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + + C +V A L+ RET L L Sbjct: 180 DELCTELLAIAATIEDEGTRGRLLEVCRRVKAHDGRYRHGTRPA---LSPRETEVLALVA 236 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ +A +LGL +TV +YL SA KLDA NR+QA+ +A + G I Sbjct: 237 TGCTNDAVARRLGLLPNTVKSYLKSAMKKLDATNRVQAVNRARQAGLI 284 >gi|146310654|ref|YP_001175728.1| transcriptional regulator FimZ [Enterobacter sp. 638] gi|145317530|gb|ABP59677.1| two component transcriptional regulator, LuxR family [Enterobacter sp. 638] Length = 210 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDF----LELFKKRSSAARNLTE 176 + G F S+ L+ N V + G + K + L+ Sbjct: 93 GRAMRAGANGFVSKRKDLSDIYNAVEMLLSGYSFFPYETLSFINHHGSHKGALNDMPLSN 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L+ +G +++EIAE+L LS T++A+ + KL ++ I A + Sbjct: 153 REVTVLRFLANGLSNKEIAEQLLLSNKTISAHKSNIYTKLGVQTIVELIDYAKAHELL 210 >gi|118602974|ref|YP_904189.1| two component LuxR family transcriptional regulator [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567913|gb|ABL02718.1| two component transcriptional regulator, LuxR family [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 209 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + D L + + +LT RE GY+++ IA +LG+S TV Sbjct: 125 DMTYILAKALRDELTDNE---PSFDSLTSREKEVACQVSSGYSNKVIARELGISDGTVKL 181 Query: 208 YLGSATVKLDAVNRIQAIAK 227 ++ S KL +R++ Sbjct: 182 HVKSILKKLSLSSRVEVAVM 201 >gi|56459425|ref|YP_154706.1| response regulator [Idiomarina loihiensis L2TR] gi|56178435|gb|AAV81157.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina loihiensis L2TR] Length = 198 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E+I C EL + LTE+E L+LA G +++ IAE+L ++ Sbjct: 108 ELIASLQRVCLGEQVISNELLLQALGQHDPLTEKERKALRLASQGLSTQAIAEQLFIAPG 167 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T YL A KL A NR +A A + G++ Sbjct: 168 TARNYLSEAINKLHASNRTEAARIAHQKGWL 198 >gi|88855004|ref|ZP_01129669.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88815532|gb|EAR25389.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 221 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 30/60 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G G T+ EI KL LS T ++ KL A +R+Q + A G + Sbjct: 156 TDREREVLALVGQGLTNAEIGVKLFLSPLTAKTHVSRIMAKLAARDRVQLVVIAYETGLV 215 >gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 201 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ KA G Sbjct: 138 PLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAG 197 Query: 233 YI 234 I Sbjct: 198 II 199 >gi|293605159|ref|ZP_06687548.1| response regulator [Achromobacter piechaudii ATCC 43553] gi|292816415|gb|EFF75507.1| response regulator [Achromobacter piechaudii ATCC 43553] Length = 218 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 10/138 (7%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD--- 159 +L+ +L A + + + L + E + + Sbjct: 79 ELTAQLHERYPQIAVLVLTMHNNPEYMVQAVKAGARGYLLKDEPAEEIVTAISAVMEGRS 138 Query: 160 ------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 L L + S+ A LT+RE L+ G +++IA LGLSV TV + + Sbjct: 139 YFSASVALRLSQ-ASAPATLLTQRERDVLRHIASGQANKQIAHALGLSVRTVETHRLNIK 197 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL + + I A+ Sbjct: 198 RKLGIDGQAELIKYAVEN 215 >gi|293369467|ref|ZP_06616050.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|292635465|gb|EFF53974.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] Length = 219 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E + L+ G T++EIA + LS HT+N++ + KL N +A A+R G Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211 Query: 234 I 234 + Sbjct: 212 V 212 >gi|288919627|ref|ZP_06413956.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349025|gb|EFC83273.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 218 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+R+ LT+RE L+L G T+ EIA +L +S+ T ++ S K+ A NR++ Sbjct: 146 SKRRTQPIEPLTQREEEVLKLVAVGRTNAEIAAELFISLTTAKTHVASLLAKIGARNRVE 205 Query: 224 AIAKAIRFG 232 A G Sbjct: 206 IAMWAYDTG 214 >gi|237722378|ref|ZP_04552859.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|260171068|ref|ZP_05757480.1| transcriptional regulator [Bacteroides sp. D2] gi|299146395|ref|ZP_07039463.1| transcriptional regulator [Bacteroides sp. 3_1_23] gi|315919388|ref|ZP_07915628.1| transcriptional regulator [Bacteroides sp. D2] gi|229448188|gb|EEO53979.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|298516886|gb|EFI40767.1| transcriptional regulator [Bacteroides sp. 3_1_23] gi|313693263|gb|EFS30098.1| transcriptional regulator [Bacteroides sp. D2] Length = 219 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E + L+ G T++EIA + LS HT+N++ + KL N +A A+R G Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211 Query: 234 I 234 + Sbjct: 212 V 212 >gi|228942499|ref|ZP_04105035.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975433|ref|ZP_04135988.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982066|ref|ZP_04142358.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228777604|gb|EEM25879.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228784227|gb|EEM32251.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817182|gb|EEM63271.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 189 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187 Query: 233 Y 233 + Sbjct: 188 W 188 >gi|134288318|ref|YP_001110481.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132968|gb|ABO59678.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 353 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ LT +E +L G T + IA++LG+S TV +L S KL N+ Q Sbjct: 291 NAPLDGLTPKELQVSRLFAQGMTYKAIAKQLGMSPATVRHHLRSIYTKLSINNKTQIARL 350 >gi|119490748|ref|ZP_01623080.1| regulatory protein, LuxR:Tetratricopeptide [Lyngbya sp. PCC 8106] gi|119453732|gb|EAW34890.1| regulatory protein, LuxR:Tetratricopeptide [Lyngbya sp. PCC 8106] Length = 121 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ RE S +L G ++ I ++LG+S TV ++ KLD +R + A+ I Sbjct: 58 NLSPREQSIARLVAQGLPNKCIGKELGISPWTVATHIRRVFKKLDVNSRAEMTARLIHSN 117 Query: 233 YI 234 + Sbjct: 118 LL 119 >gi|37681305|ref|NP_935914.1| LuxR family transcriptional regulator [Vibrio vulnificus YJ016] gi|37200056|dbj|BAC95885.1| transcriptional regulator, LuxR family [Vibrio vulnificus YJ016] Length = 215 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 146 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 205 Query: 226 AKAIRF 231 + Sbjct: 206 ILLQQL 211 >gi|312129464|ref|YP_003996804.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311906010|gb|ADQ16451.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 212 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE +L +G T+ EIA+KL LSV TV + + KL+ N + + Sbjct: 148 KLSSREVDIARLIMEGLTNIEIADKLFLSVRTVETHRKNILAKLNLKNTASLVKYLMEN 206 >gi|299536275|ref|ZP_07049588.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728261|gb|EFI68823.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 243 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +T+RE L+ G + EIA++L +S +T+ +L + K NR Q +AK ++ Sbjct: 181 EMTDREREVLKFVFKGLKNIEIAKQLFVSENTIKKHLQNLYRKFQVTNRTQLLAKCLK 238 >gi|298717364|ref|YP_003730006.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Pantoea vagans C9-1] gi|298361553|gb|ADI78334.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Pantoea vagans C9-1] Length = 206 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175 PV + K G F ++ + + +++A ++ + ++R + LT Sbjct: 85 TIPVTVRAMKTGAYEFLTK--PVDPDRMLQAVAEALRIAEQNMASSEERREIFQRHQTLT 142 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE+ + LA G +++IA ++G+S T + K++A + + A R Sbjct: 143 PRESEVMLLAISGLLNKQIAAEMGVSEITAKVHKRRVMEKMNARSLTDLVRAAERLNI 200 >gi|296102946|ref|YP_003613092.1| sgAB operon transcriptional regulatory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057405|gb|ADF62143.1| sgAB operon transcriptional regulatory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 216 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|294054984|ref|YP_003548642.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293614317|gb|ADE54472.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 215 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 37/79 (46%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ D + K + S LT+RE LQL + ++ EIA KL +SV T + + K Sbjct: 132 LLRDAMADPKSKESGINILTKRERQILQLIAESNSTREIASKLDISVKTAENHRTNLMRK 191 Query: 216 LDAVNRIQAIAKAIRFGYI 234 LD + AI G I Sbjct: 192 LDLHDVASLTRYAINHGLI 210 >gi|291298065|ref|YP_003509343.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567285|gb|ADD40250.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 204 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 37/103 (35%), Positives = 46/103 (44%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V F A + AC ++ D + LT RE L + G T Sbjct: 102 VSFMGTCASAAQFLESVRQIACGHLVMDSDVALGLLRANHSPLTAREREVLSITHGGATP 161 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA KL LSV TV YL +A KL A NRI+AI A G+I Sbjct: 162 KEIASKLQLSVGTVRNYLANACAKLGARNRIEAIRVAQSAGWI 204 >gi|289626196|ref|ZP_06459150.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648347|ref|ZP_06479690.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 2250] gi|330868455|gb|EGH03164.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 909 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE L L G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 845 SDCLSVRELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKV 904 Query: 231 FGYI 234 G + Sbjct: 905 LGLL 908 >gi|229819214|ref|YP_002880740.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565127|gb|ACQ78978.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 209 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFL-ELFKKRSSAARNLTERET 179 L GYV+ + L V A V + + ++ A L+ RE Sbjct: 94 LDAGARGYVLKDAPREELFRAVRAVADGETFLAPSVAGLLVSRVRARQQPAPAALSGREV 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG T+ + A+ LG++ TV +L KL +R A+A R G + Sbjct: 154 DVLRLVADGRTNRQAAQLLGVTEATVKTHLLHVYAKLGVPDRAAAVAAGYRSGLL 208 >gi|219850507|ref|YP_002464940.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544766|gb|ACL26504.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 213 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 15/158 (9%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVI 146 + S L + + + E+I Sbjct: 53 LDLSLTNSSGLAAIQSLRAAAPQARILVLTMHDDEGYVRQALAAGAHGYVLKRAADAELI 112 Query: 147 IEAH-------GACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + LE + ++ +L+ERE L L GYT+ EIA Sbjct: 113 AAIRAVLRGELYIHPALTRRLLEDILPQPQPTNPWESLSEREREVLVLVARGYTAAEIAG 172 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV Y KL +R + A+ + Sbjct: 173 QLNLSPKTVETYRTRGMEKLGLRSRAALVQFALDHNLL 210 >gi|88191939|pdb|1ZLK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain-Dna Complex gi|88191940|pdb|1ZLK|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain-Dna Complex gi|185177931|pdb|3C57|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain Crystal Form Ii gi|185177932|pdb|3C57|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain Crystal Form Ii Length = 95 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT++E + L L +G T+++IA+++ L+ TV Y+ KL R QA A Sbjct: 24 PLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFAT 83 Query: 230 RF 231 Sbjct: 84 EL 85 >gi|304321086|ref|YP_003854729.1| putative two-component response regulator protein [Parvularcula bermudensis HTCC2503] gi|303299988|gb|ADM09587.1| putative two-component response regulator protein [Parvularcula bermudensis HTCC2503] Length = 217 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 154 YQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L LT+RE L+L +G T++ IA +L +S TV A++ Sbjct: 132 QALLAAVLTPKAAAPPEYHLVERLTDREREVLRLISEGKTNKAIARELVISPATVKAHVE 191 Query: 211 SATVKLDAVNRIQAIAKAIR 230 KL A +R QA +R Sbjct: 192 RCLAKLGAADRTQAAVMMVR 211 >gi|320173627|gb|EFW48819.1| Transcriptional regulatory protein UhpA [Shigella dysenteriae CDC 74-1112] Length = 196 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 A I V G F S+ E+I H +L Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAIKL 130 Query: 170 AA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A+ LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGHQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|269127816|ref|YP_003301186.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312774|gb|ACY99148.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A +VI L + ++A LT RE L+LAG+G + +IA+ L L++ TV Sbjct: 115 LRRVAAGERVIDADLAFAE-LAAADSPLTPRELEVLRLAGEGASVAQIADTLVLTIGTVR 173 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L K+ A NR+ AI A G++ Sbjct: 174 NHLSRINRKIGARNRVHAIRIAESAGWL 201 >gi|300784547|ref|YP_003764838.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794061|gb|ADJ44436.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 186 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L+ RE LQL DG +++EI E+L LS TV ++L KL +R Q +A A+ Sbjct: 121 TPRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALAM 180 Query: 230 RFGYI 234 R G I Sbjct: 181 RAGVI 185 >gi|220904084|ref|YP_002479396.1| LuxR family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868383|gb|ACL48718.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 223 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE +L DG++ + IA L +S TV + + KL A + + AIR G Sbjct: 160 ALSPREKEIFRLLADGHSVKAIAGDLHISPKTVETHKYNLLTKLQAGSVGDLVKIAIRHG 219 Query: 233 YI 234 + Sbjct: 220 LV 221 >gi|223934862|ref|ZP_03626781.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896315|gb|EEF62757.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 213 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE LQL +G T+++IA +LG+S TV + KL + A+ Sbjct: 140 RTEHLTSREAEVLQLIAEGQTNKQIAFELGISAKTVEKHRQQVMNKLKIHDVAGLTRYAL 199 Query: 230 RFGYI 234 G I Sbjct: 200 SKGII 204 >gi|186474727|ref|YP_001863698.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184198686|gb|ACC76648.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 210 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 15/172 (8%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + S + + + S L R+ + + + Sbjct: 39 VIDRLRSCV--VDLLLLDMTMPGISGVDLIRRVRVEQPSLPVLVLSIHDEAQVASRALRA 96 Query: 136 SEFLMLANEVIIEAHGACYQVITD-------------FLELFKKRSSAARNLTERETSCL 182 L + + A + +TD E + L++RE L Sbjct: 97 GATGYLTKDSDPDVLLAAIRKLTDGGRFIDPKLVDGMIFETQRGDVPPHEVLSDREFQVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q+ G + EIA+ LS T++ Y KL N + I AIR G I Sbjct: 157 QMLAAGRSINEIADACALSAKTISTYKTRLMQKLGFSNNAEVIRYAIRHGLI 208 >gi|150377712|ref|YP_001314307.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150032259|gb|ABR64374.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 218 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 3/100 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEI 194 + E ++EA + + + + +LT RE L G +++I Sbjct: 102 EKPASREALLEAVDRALRRCDARRAEYDRIHALKARLVSLTPREFEVFGLITRGRRNKQI 161 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L S TV A+ SA KL + +A++ A R G + Sbjct: 162 AYDLSTSERTVKAHRRSAMEKLGVGSLAEAVSIAERLGLL 201 >gi|127512655|ref|YP_001093852.1| LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126637950|gb|ABO23593.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 208 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++ + +++ A NLT RE LQ G T+ +IA +L +S T+ Sbjct: 118 VLRGQTVIPHALLSA-SADQEQLDGADNLTIREREVLQALLSGSTNVDIANQLFVSESTI 176 Query: 206 NAYLGSATVKLDAVNRIQAIAKA 228 +L K+ +R QAIA A Sbjct: 177 KTHLYRVFRKIGVSSRGQAIAWA 199 >gi|331649340|ref|ZP_08350426.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli M605] gi|330909574|gb|EGH38088.1| putative regulator [Escherichia coli AA86] gi|331041838|gb|EGI13982.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli M605] Length = 200 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|226304519|ref|YP_002764477.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183634|dbj|BAH31738.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 220 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + RS + L+ RE +QL G + +IA+ L L TV +++ Sbjct: 133 LIVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHIS 192 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL R+Q + A R I Sbjct: 193 NICKKLQVRTRVQIVIWAYRNNVI 216 >gi|222152374|ref|YP_002561549.1| response regulator protein [Streptococcus uberis 0140J] gi|222113185|emb|CAR40638.1| response regulator protein [Streptococcus uberis 0140J] Length = 226 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L++ E +Q G G ++ EIA+KL LS TV YL + KL +R Q +++ Sbjct: 155 ESLSKAEWKIIQQVGFGLSNREIAQKLFLSEGTVRNYLSNVLAKLQLRDRTQLAIWSVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|193061833|ref|ZP_03042930.1| transcriptional regulator, LuxR family [Escherichia coli E22] gi|194428712|ref|ZP_03061249.1| transcriptional regulator, LuxR family [Escherichia coli B171] gi|209920980|ref|YP_002295064.1| putative transcriptional regulator [Escherichia coli SE11] gi|256020867|ref|ZP_05434732.1| putative transcriptional regulator [Shigella sp. D9] gi|260846309|ref|YP_003224087.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli O103:H2 str. 12009] gi|307314352|ref|ZP_07593959.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|331670350|ref|ZP_08371189.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli TA271] gi|332282081|ref|ZP_08394494.1| transcriptional regulator [Shigella sp. D9] gi|192932623|gb|EDV85220.1| transcriptional regulator, LuxR family [Escherichia coli E22] gi|194413295|gb|EDX29580.1| transcriptional regulator, LuxR family [Escherichia coli B171] gi|209914239|dbj|BAG79313.1| putative transcriptional regulator [Escherichia coli SE11] gi|257761456|dbj|BAI32953.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli O103:H2 str. 12009] gi|306906067|gb|EFN36587.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|315062799|gb|ADT77126.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli W] gi|323376613|gb|ADX48881.1| transcriptional regulator, LuxR family [Escherichia coli KO11] gi|324021178|gb|EGB90397.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3] gi|331062412|gb|EGI34332.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli TA271] gi|332104433|gb|EGJ07779.1| transcriptional regulator [Shigella sp. D9] Length = 200 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I+ L +S TV A+L S +L+ NR QA Sbjct: 162 ISRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|183221890|ref|YP_001839886.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911960|ref|YP_001963515.1| two component response regulator receiver protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776636|gb|ABZ94937.1| Receiver component of a two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780312|gb|ABZ98610.1| Putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 212 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 40/79 (50%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + F K +++ +LT+RET LQL G IAE L LS HTV+ Y+ S K Sbjct: 134 ALRVFSSFRKVKTNEEESLTDRETQILQLLVKGKKISSIAELLLLSEHTVHGYVKSIYKK 193 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L NR++ KA + + Sbjct: 194 LMVHNRVELTLKAQKLSLL 212 >gi|325282407|ref|YP_004254948.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314216|gb|ADY25331.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 222 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 43/96 (44%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A E ++ A + + + +L ERET L+L G+++++IA + Sbjct: 123 RRVAAGEALLNPDMAQNVLDDFRDKREELPQEKHNDLNERETMILKLLAQGFSNQDIALR 182 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S TV L KL NR QA AIR G Sbjct: 183 LDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 218 >gi|282879611|ref|ZP_06288342.1| hemerythrin HHE cation binding domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306559|gb|EFA98588.1| hemerythrin HHE cation binding domain protein [Prevotella timonensis CRIS 5C-B1] Length = 318 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE + G T++EIA+ L +S++TV + + KL + AI Sbjct: 249 EILSEREKEVIVSLVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPSGLTIYAIVN 308 Query: 232 GYI 234 I Sbjct: 309 NLI 311 >gi|271969982|ref|YP_003344178.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513157|gb|ACZ91435.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 215 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + A+ LT RET +Q G T++EIA++L +S+ TV Y+ Sbjct: 131 RLLRHLADRGARAKARM--PAQPLTARETEIVQAIARGRTNQEIADELFISLSTVKGYVS 188 Query: 211 SATVKLDAVNRIQAIAKAIR 230 KL +R++ +A A Sbjct: 189 GIMAKLGVRSRVKIVAWAWE 208 >gi|160947148|ref|ZP_02094315.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270] gi|158446282|gb|EDP23277.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270] Length = 199 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT++E L+ G +++EI+EKL LS TV Y+ KL+ +R Q Sbjct: 140 ELLTQKEIEILEQIAKGLSNKEISEKLFLSEGTVRNYISGILEKLELRDRTQLAIY 195 >gi|297625366|ref|YP_003687129.1| LuxR family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921131|emb|CBL55678.1| two-component response regulator LuxR [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 236 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 30/65 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE L L G G + EIAE L L TV ++G KL +R+ + A Sbjct: 168 RLEALTDREREVLTLVGQGLNNTEIAETLFLGSATVKTHIGHILAKLQLRDRVHMVVFAY 227 Query: 230 RFGYI 234 G + Sbjct: 228 DAGLV 232 >gi|271962179|ref|YP_003336375.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505354|gb|ACZ83632.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 9/116 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS------AARNL 174 L G+++ + ML+ + A+ + L F L Sbjct: 97 LRAGARGFLLKNAGAEMLSQAIHAAANGDALIAPSITARLLSAFAGSGPVSPPAKPVETL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T+RE L G T+ EIA++ +S+ TV +++ S KL A NR++ A Sbjct: 157 TDREEQILATVARGRTNSEIADEFYISLSTVKSHIASLMAKLGARNRVEIAMWAYE 212 >gi|260779547|ref|ZP_05888437.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC BAA-450] gi|260604356|gb|EEX30660.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC BAA-450] Length = 211 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ + Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207 >gi|238757449|ref|ZP_04618634.1| hypothetical protein yaldo0001_29430 [Yersinia aldovae ATCC 35236] gi|238704211|gb|EEP96743.1| hypothetical protein yaldo0001_29430 [Yersinia aldovae ATCC 35236] Length = 210 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I+ L + ++ LT RE L+L +G + IA++L +S TV + + KL Sbjct: 132 ISRVNRLTQNSDNSRTALTPRERQVLKLITEGACNRIIADRLSISKKTVETHRLNMMKKL 191 Query: 217 DAVNRIQAIAKAIRFGY 233 D + I + R G Sbjct: 192 DVHKVAELINWSYRLGM 208 >gi|227511558|ref|ZP_03941607.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227085203|gb|EEI20515.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 202 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 39/66 (59%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++A L+++E L+ A DG T++EIAEKL LS TV YL + KL NR++A+ Sbjct: 135 NAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNM 194 Query: 228 AIRFGY 233 A + Sbjct: 195 AKNNKW 200 >gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 319 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|153806156|ref|ZP_01958824.1| hypothetical protein BACCAC_00411 [Bacteroides caccae ATCC 43185] gi|149130833|gb|EDM22039.1| hypothetical protein BACCAC_00411 [Bacteroides caccae ATCC 43185] Length = 203 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + + + L++RE + G T++EIAEKL LS+HTV + + + KL + Sbjct: 122 MSSEEDEVDSQDALSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHS 181 Query: 221 RIQAIAKAIRFGYI 234 AI + Sbjct: 182 AAGLTIYAIVNKLV 195 >gi|31790500|emb|CAD56676.1| putative regularory protein [Enterobacter sakazakii] Length = 216 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|186682209|ref|YP_001865405.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464661|gb|ACC80462.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 232 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + S + +T RE L L G G T+ EIA++L ++ TV ++ Sbjct: 140 LLVTEAASASANQNSASSKPSE-ITAREQEVLCLIGVGATNREIAQQLYITEGTVKTHVT 198 Query: 211 SATVKLDAVNRIQAIAKA 228 S +L+ NR Q A Sbjct: 199 SILSRLNLKNRSQLAIYA 216 >gi|298246648|ref|ZP_06970453.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549307|gb|EFH83173.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 920 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S LT RE L L +G +++ IAE+L +S+ TV ++GS +KL A NR A+ Sbjct: 852 PASPLLEPLTPREQEVLYLLAEGASNQVIAERLVVSLTTVKKHVGSLFLKLAADNRTHAV 911 Query: 226 AKAIRFGYI 234 A A + Sbjct: 912 ALARELSLL 920 >gi|254786770|ref|YP_003074199.1| positive regulator AgmR [Teredinibacter turnerae T7901] gi|237687202|gb|ACR14466.1| positive regulator AgmR [Teredinibacter turnerae T7901] Length = 212 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT ++ + L+ +G +++EIA +LG+S T Y+ +LDA NR QA+ A R G Sbjct: 144 LTTQQRATLRYLAEGLSNKEIAIQLGVSPSTAKEYVSKVIERLDATNRTQAVLAAQREGL 203 Query: 234 I 234 + Sbjct: 204 L 204 >gi|223940236|ref|ZP_03632096.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891123|gb|EEF57624.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 222 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + I RS L+ RE L+L G +EIA+ LG+++ TV + Sbjct: 145 LNSLIARKIVQHFHHQPSRSGKEHPLSVREREVLELLSKGLPYKEIADMLGVNIETVRKH 204 Query: 209 LGSATVKLDAVNRIQAIA 226 + KL +R +A+ Sbjct: 205 CHNIYEKLQVSSRTEAVV 222 >gi|87200639|ref|YP_497896.1| two component LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87136320|gb|ABD27062.1| two component transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 207 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 1/109 (0%) Query: 126 FHKNGYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G V F + L E I A E ++ LT + L Sbjct: 95 ARAFGAVGFLRKDADLTRIEDAICAALDGGAAPAAAAEPIEQVRREVAGLTPTQLKVLLA 154 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G +++IA LG+S TV A++ + KLD NR QA A G Sbjct: 155 VLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQNRTQAALVARSLGL 203 >gi|91793679|ref|YP_563330.1| regulatory protein, LuxR [Shewanella denitrificans OS217] gi|91715681|gb|ABE55607.1| transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 210 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 32/66 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +LT RE LQ G T+ +IA +L +S T+ +L A K+ +R Sbjct: 136 LHDDTEDETDSLTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRAFRKIGVSSRG 195 Query: 223 QAIAKA 228 QAIA A Sbjct: 196 QAIAWA 201 >gi|302536520|ref|ZP_07288862.1| predicted protein [Streptomyces sp. C] gi|302445415|gb|EFL17231.1| predicted protein [Streptomyces sp. C] Length = 224 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L+ RE L L ++ +IA +LG++ TV +L + KL+AV+R+ A+ K Sbjct: 148 APAPSGLSPREREVLTLVAHAMSNRQIASELGVAEGTVKRHLRNIFEKLEAVSRVDAVNK 207 Query: 228 AIRFGYI 234 AI I Sbjct: 208 AIDAQLI 214 >gi|291303040|ref|YP_003514318.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572260|gb|ADD45225.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 36/85 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A + TD L LT RE L L G +++EI +L L+ TV A+ Sbjct: 130 AGRVIAEFDTDRLTRGTGAQRKVAELTPRENEVLGLIASGLSNQEIGRRLHLTEGTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + + +L NR++A + G Sbjct: 190 VSAILQRLGVRNRVEAAIIGYQAGL 214 >gi|160888907|ref|ZP_02069910.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492] gi|270293670|ref|ZP_06199872.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479365|ref|ZP_07938499.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] gi|156861806|gb|EDO55237.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492] gi|270275137|gb|EFA20997.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904439|gb|EFV26259.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] Length = 220 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 5/89 (5%) Query: 151 GACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 C V L S LT E S L+ G T++EIA + LS HTV Sbjct: 125 FICNHVSNLLLAGNGSSSPTHPTIKDDLLTTAERSILKEIALGKTTKEIAAERNLSFHTV 184 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N++ + KL N +A A++ G + Sbjct: 185 NSHRKNIFRKLGVNNAHEATKYAMKAGIV 213 >gi|50954584|ref|YP_061872.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951066|gb|AAT88767.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 225 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 4/135 (2%) Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + AG + F ++ + ++ V + Sbjct: 89 FDLDEYAFGGLRAGASGFLLKDARPDDLTAAIRAVAAGDAAVSGRVTRAMLELFADRLPT 148 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 E A LT RE L DG T+ EI L+ TV ++G KL Sbjct: 149 TTESAAPGGDPAAALTPREREILLAIADGLTNGEIGATFHLTESTVKTHVGRVLSKLHLR 208 Query: 220 NRIQAIAKAIRFGYI 234 +R+ A+ A G I Sbjct: 209 DRVHAVIFAYDNGLI 223 >gi|319793244|ref|YP_004154884.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595707|gb|ADU36773.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 229 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 L + + L+ + +A F + L+ RE+ L Sbjct: 119 NLRAGGSPMSPVIARQLLRRWQTRADASQPAPASPGASAARFSTVAP--ERLSPRESEVL 176 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+T E+ ++G+S TV +++ + KLD N+ +A+ +A G++ Sbjct: 177 GLVSRGFTYVEVGAQMGVSASTVQSHIRNIYGKLDVHNKSEAVFEARNLGWL 228 >gi|290955347|ref|YP_003486529.1| two-component system regulator [Streptomyces scabiei 87.22] gi|260644873|emb|CBG67959.1| putative two-component system regulator [Streptomyces scabiei 87.22] Length = 236 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + R LT RE L+L +G ++ E+AE LG++ T ++ K+ A +R Sbjct: 157 ADAADLAGLRGLTAREAQVLRLIAEGLSNAELAELLGIAESTAKTHVKRVLHKIGARDRA 216 Query: 223 QAIAKAIRFGY 233 QA+ A R G Sbjct: 217 QAVVLAYRSGL 227 >gi|253989299|ref|YP_003040655.1| nitrate/nitrite response regulator protein narp [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780749|emb|CAQ83911.1| nitrate/nitrite response regulator protein narp [Photorhabdus asymbiotica] Length = 211 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L K LT+RE L+ G T++E+A+ L +S TV ++ + KL+ Sbjct: 133 QHLANRHKHVDPLSELTKRELDVLKEVSSGMTNKEVADVLFISEETVKVHIRNLLKKLNV 192 Query: 219 VNRIQAIAKAIRF 231 +R+ A ++ Sbjct: 193 RSRLAATIMYLQH 205 >gi|215489014|ref|YP_002331445.1| DNA-binding transcriptional activator UhpA [Escherichia coli O127:H6 str. E2348/69] gi|215267086|emb|CAS11532.1| DNA-binding response regulator UhpA in two-component regulatory system wtih UhpB [Escherichia coli O127:H6 str. E2348/69] gi|323189591|gb|EFZ74871.1| transcriptional regulatory protein uhpA [Escherichia coli RN587/1] Length = 196 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU] gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter baumannii 1656-2] gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 319 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|163735876|ref|ZP_02143304.1| transcriptional regulator, LuxR family, putative [Roseobacter litoralis Och 149] gi|161390812|gb|EDQ15153.1| transcriptional regulator, LuxR family, putative [Roseobacter litoralis Och 149] Length = 239 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + LT ++ ++L G +++IA +L L+ TV A++ + +L NR Sbjct: 154 ADEFQHPKLAELTPQQQRIMRLICFGKPNKQIAYELDLAEATVKAHITALLRRLGVRNRT 213 Query: 223 QAI-----AKAIRFG 232 QA+ A A + G Sbjct: 214 QAVVLVEGAMAAQRG 228 >gi|26250153|ref|NP_756193.1| putative transcriptional regulator YhjB [Escherichia coli CFT073] gi|110643767|ref|YP_671497.1| transcriptional regulator YhjB [Escherichia coli 536] gi|191170596|ref|ZP_03032149.1| transcriptional regulator, LuxR family [Escherichia coli F11] gi|227883679|ref|ZP_04001484.1| transcriptional regulator YhjB [Escherichia coli 83972] gi|300971326|ref|ZP_07171407.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|300976738|ref|ZP_07173557.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|301046587|ref|ZP_07193728.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|26110582|gb|AAN82767.1|AE016768_185 Hypothetical transcriptional regulator yhjB [Escherichia coli CFT073] gi|110345359|gb|ABG71596.1| hypothetical transcriptional regulator YhjB [Escherichia coli 536] gi|190909404|gb|EDV68990.1| transcriptional regulator, LuxR family [Escherichia coli F11] gi|222035230|emb|CAP77975.1| HTH-type transcriptional regulator yhjB [Escherichia coli LF82] gi|227839259|gb|EEJ49725.1| transcriptional regulator YhjB [Escherichia coli 83972] gi|281180558|dbj|BAI56888.1| putative transcriptional regulator [Escherichia coli SE15] gi|300301451|gb|EFJ57836.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|300308475|gb|EFJ62995.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|300411311|gb|EFJ94849.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|307555623|gb|ADN48398.1| hypothetical transcriptional regulator YhjB [Escherichia coli ABU 83972] gi|312948079|gb|ADR28906.1| transcriptional regulator YhjB [Escherichia coli O83:H1 str. NRG 857C] gi|315295417|gb|EFU54747.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1] gi|323966038|gb|EGB61478.1| luxR family protein regulatory protein [Escherichia coli M863] gi|324007328|gb|EGB76547.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2] gi|324014189|gb|EGB83408.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1] gi|327251163|gb|EGE62856.1| transcriptional regulator, LuxR family protein [Escherichia coli STEC_7v] Length = 200 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|37526610|ref|NP_929954.1| nitrate/nitrite response regulator protein NarP [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786042|emb|CAE15094.1| Nitrate/nitrite response regulator protein NarP [Photorhabdus luminescens subsp. laumondii TTO1] Length = 211 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L K LT+RE L+ G T++E+A+ L +S TV ++ + KL+ Sbjct: 133 QHLANRHKHVDPLSELTKRELDVLKEVSSGMTNKEVADVLFISEETVKVHIRNLLKKLNV 192 Query: 219 VNRIQAIAKAIRF 231 +R+ A ++ Sbjct: 193 RSRLAATIMYLQH 205 >gi|91975822|ref|YP_568481.1| response regulator FixJ [Rhodopseudomonas palustris BisB5] gi|91682278|gb|ABE38580.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 205 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 49/118 (41%), Gaps = 5/118 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL---ELFKKRSSAARNLTE 176 P+ + K G + F ++ +I ++ + + + + ++L+ Sbjct: 88 VPLAVEAMKLGAIDFI--EKPFDDDRLIGMIETSLKLAGEEAKSEAVSQDIVARIQSLSP 145 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G +++ IA + +S T+ Y + K+ A + + + A+R G I Sbjct: 146 RELQVMEGLIAGMSNKAIAREFDISPRTIEVYRANVMTKMQASSLSELVRMAMRGGVI 203 >gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624] gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624] Length = 319 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|297562938|ref|YP_003681912.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847386|gb|ADH69406.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + A +LT RE L GYT+ EI E+L LS+ TV ++G K + +R+ Sbjct: 151 IDGDTRRAVASLTPREQEVLVAVALGYTNTEICERLVLSMPTVKTHVGHVLAKTGSRDRV 210 Query: 223 QAIAKAIRFGYI 234 QA+ A R G + Sbjct: 211 QAVLFAFRAGLV 222 >gi|254430257|ref|ZP_05043960.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197624710|gb|EDY37269.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 291 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 30/65 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G ++ EIA L LSV TV +L + KL A +R A + Sbjct: 222 PLEPLTPRELEVLAQVARGCSNVEIAGSLYLSVDTVKTHLQNVLRKLPARDRAHAAVLGV 281 Query: 230 RFGYI 234 +G I Sbjct: 282 CWGLI 286 >gi|159028166|emb|CAO89773.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E +QL G + EIA KL +S T+ +++ + K NR + AI Sbjct: 162 ELTPTELKVVQLVAQGLANREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELSQWAIE 219 >gi|315646876|ref|ZP_07899991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] gi|315277806|gb|EFU41130.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] Length = 100 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L +G ++EEIA+ L +S TV Y+ + KL+ NR+QA+ K I Sbjct: 36 TKRELELLVLIMEGSSNEEIAQMLMISTGTVKRYIHNIYQKLEVKNRVQAVKKIKENHLI 95 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074670|gb|ADJ64069.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + ++++ + + LT R+ LQL +G ++EIA +L +S T+ + Sbjct: 129 HISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTIETHRA 188 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 +LD + + AIR G Sbjct: 189 QLMERLDIRDVPGLVRYAIRTGI 211 >gi|295131556|ref|YP_003582219.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|291375244|gb|ADD99098.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313771696|gb|EFS37662.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313810519|gb|EFS48233.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313831559|gb|EFS69273.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313832545|gb|EFS70259.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314974910|gb|EFT19005.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977995|gb|EFT22089.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984592|gb|EFT28684.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315095475|gb|EFT67451.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|327332792|gb|EGE74524.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327448413|gb|EGE95067.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448489|gb|EGE95143.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|328762067|gb|EGF75572.1| two-component system response regulator [Propionibacterium acnes HL099PA1] Length = 224 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|329667775|gb|AEB93723.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 224 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 30/58 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + E +Q G G +++EIA KL LS TV Y+ KLD +R Q A++ G Sbjct: 158 SRSEWCVIQQVGLGLSNKEIATKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQTG 215 >gi|288927583|ref|ZP_06421430.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330417|gb|EFC69001.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 318 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL+ERE + G T++EIA+ L +S++TV + + KL + AI Sbjct: 249 DNLSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 NLV 311 >gi|260911714|ref|ZP_05918290.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] gi|260634139|gb|EEX52253.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] Length = 318 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL+ERE + G T++EIA+ L +S++TV + + KL + AI Sbjct: 249 DNLSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 NLV 311 >gi|171058086|ref|YP_001790435.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775531|gb|ACB33670.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 211 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 16/164 (9%) Query: 87 IIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVI-- 133 W + + L L + V L GY+ Sbjct: 47 FAWDVAVLDYRMPGKGGIDLIKELRQRFPDRPVLVLSVCPEDQYAMRVLRAGAAGYLTKE 106 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYT 190 E L+ A + + + L L L++RE + L G Sbjct: 107 SAPEDLVNAIRKVARGGRFVSAALGEQLALSLSTGGDEPLHCRLSDREYQIMWLLASGKK 166 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA++L LS +T++ Y KLD + + + AI + Sbjct: 167 VGEIAQQLFLSPNTISTYRKRILEKLDLKSNAELMRYAIGHQLV 210 >gi|110678226|ref|YP_681233.1| LuxR family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109454342|gb|ABG30547.1| transcriptional regulator, LuxR family, putative [Roseobacter denitrificans OCh 114] Length = 239 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + LT ++ ++L G +++IA +L L+ TV A++ + +L NR Sbjct: 154 ADEFQHPKLAELTPQQQRIMRLICCGKPNKQIAYELDLAEATVKAHITALLRRLGVRNRT 213 Query: 223 QAI-----AKAIRFG 232 QA+ A A + G Sbjct: 214 QAVVLVEGALAAQRG 228 >gi|15596957|ref|NP_250451.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9947738|gb|AAG05149.1|AE004601_14 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 907 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 + + + G + +L S N ++ RE L+ Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA+ + LS T+ +L + KL +R QA+ K G + Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 245 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + ++ L K + T RE S LQL +G ++EI Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEALPSKE-PVVHSFTPREASVLQLVAEGLMNKEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ K +R + + A+ + Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244 >gi|327313477|ref|YP_004328914.1| LuxR family transcriptional regulator [Prevotella denticola F0289] gi|326945945|gb|AEA21830.1| transcriptional regulator, LuxR family [Prevotella denticola F0289] Length = 214 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C L LT+ ET L+ G T+ EIAEK S HTVN + Sbjct: 124 FLCQHAADLLLAPAASLDRDVVKLTKTETEILKEIALGLTTREIAEKRFSSFHTVNTHRK 183 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N +A+ A+R G + Sbjct: 184 NIFRKLGVNNVHEAMRYAMRSGLV 207 >gi|307727191|ref|YP_003910404.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587716|gb|ADN61113.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 210 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 13/156 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + S L R+ + + + + + + Sbjct: 53 LDMTMPGISGVDLIRRVRAERPSLPLLVLSIHNEAQVVSRALRAGATGYVTKDSNPDVLL 112 Query: 152 ACYQVITDFLELFKKR-------------SSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A + + + + + L++RE LQ+ G + EIAE Sbjct: 113 AAIRRLAEGGRFIDPKLVEGIVFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIAEAF 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS T++ + KL N I AIR G + Sbjct: 173 ALSAKTISTHKMRLMQKLGLANNADLIRYAIRHGLV 208 >gi|255323701|ref|ZP_05364829.1| transcriptional response regulator, receiver domain [Corynebacterium tuberculostearicum SK141] gi|255299191|gb|EET78480.1| transcriptional response regulator, receiver domain [Corynebacterium tuberculostearicum SK141] Length = 217 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 13/121 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L G+++ T+ L V A G +V+ + + L + Sbjct: 98 LRAGAVGFLLKTTAPEALVASVRAAAQGQQQLSPKVLENLVGLAATPPQPEQEMIQPSGL 157 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE QL G ++ EIAE+L +S+ TV ++ K+D NR+ IA A+ Sbjct: 158 AELSERENEIAQLVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IAIAVLG 216 Query: 232 G 232 G Sbjct: 217 G 217 >gi|237715864|ref|ZP_04546345.1| transcriptional regulator [Bacteroides sp. D1] gi|229443511|gb|EEO49302.1| transcriptional regulator [Bacteroides sp. D1] Length = 221 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 C V L +A+ LT+ E + L+ G T++EIA + LS HT+N Sbjct: 127 YICNHVSNLLLSGASSPLAASSVDDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTIN 186 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL N +A A+R G + Sbjct: 187 SHRKNIFRKLGVNNVHEATKYAMRAGIV 214 >gi|182412651|ref|YP_001817717.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839865|gb|ACB74117.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 219 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V+ F + + R+ + LT R +QL +G +++EIA L LSV T+ + Sbjct: 132 ISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVKTIETHRM 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +L + + A+R G I Sbjct: 192 HLMARLGLHDVAGVVRYALRTGLI 215 >gi|21230300|ref|NP_636217.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769706|ref|YP_244468.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992921|ref|YP_001904931.1| Putative transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|21111849|gb|AAM40141.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575038|gb|AAY50448.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734681|emb|CAP52891.1| Putative transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 235 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + A + + V + L ++ + Sbjct: 86 APGDSHEATWLMPPRPAEMRDARLPIQLLGTTLGMVCVAWNDGRLAPGSDDLQALQAFAL 145 Query: 155 QVITDFLELFKKRS---------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E + + L++RE L L G T+ +A +LG+S TV Sbjct: 146 LLPAMVAEPARPVATRRRKAVQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ KL+ +R QA A+ G Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVHAGL 233 >gi|153947769|ref|YP_001402787.1| DNA-binding response regulator EsrB [Yersinia pseudotuberculosis IP 31758] gi|170026132|ref|YP_001722637.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|152959264|gb|ABS46725.1| putative DNA-binding response regulator EsrB [Yersinia pseudotuberculosis IP 31758] gi|169752666|gb|ACA70184.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] Length = 210 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L + LT RE L+L +G + IA +L +S TV + + KL Sbjct: 134 MVIKLTQGSDNTPPV--LTPRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKL 191 Query: 217 DAVNRIQAIAKAIRFGY 233 D + I + R G Sbjct: 192 DVHKVAELIHWSYRLGL 208 >gi|126175697|ref|YP_001051846.1| response regulator receiver protein [Shewanella baltica OS155] gi|125998902|gb|ABN62977.1| transcriptional regulator, LuxR family [Shewanella baltica OS155] Length = 249 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%) Query: 108 LEGGLLPFAGIAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 L + + +R + ++ T M+A E+ + +L Sbjct: 110 ERDSLDQESAMLLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDG 169 Query: 166 KRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + LT RE + +Q G ++EIA +L +S HTV A++ S K + Sbjct: 170 NNEMPSDSVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSR 229 Query: 220 NRIQAIAKA 228 NR++ + A Sbjct: 230 NRVELLRWA 238 >gi|257054193|ref|YP_003132025.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584065|gb|ACU95198.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 214 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 35/68 (51%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +R L+ERE S L+L G G ++ EIAE+L L+ TV Y+ S KL R Q Sbjct: 142 SPERPDPLDKLSERERSVLELIGQGLSNREIAERLFLAEKTVKNYVTSLLSKLGMRRRTQ 201 Query: 224 AIAKAIRF 231 A A R Sbjct: 202 AAAWVARH 209 >gi|170721339|ref|YP_001749027.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169759342|gb|ACA72658.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 491 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Query: 140 MLANEVIIEAHGACYQVITDFL---ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194 V+ +A +I + R A +LT RE L L +G +EI Sbjct: 390 EAIETVMQDASWFSQTLIEKLANAKRINTGRLPDASFTDLTRRERDVLALICEGLADKEI 449 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L L+++TV ++ + KLD +R +AI A Sbjct: 450 ATRLNLALNTVRNHVATVYSKLDVHSRSEAIVWARERRL 488 >gi|303237715|ref|ZP_07324275.1| transcriptional regulator, LuxR family [Prevotella disiens FB035-09AN] gi|302482167|gb|EFL45202.1| transcriptional regulator, LuxR family [Prevotella disiens FB035-09AN] Length = 203 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GY ++EIA KL +S+ TV + + KL + A+ GY Sbjct: 138 LSNREIEVLSLVVQGYINKEIASKLCISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 197 Query: 234 I 234 + Sbjct: 198 V 198 >gi|296101486|ref|YP_003611632.1| two component LuxR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055945|gb|ADF60683.1| two component LuxR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 209 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 17/162 (10%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 I + E+ L RL F I + G + ++ Sbjct: 48 IDVAVMDVAMPDENGLSLLKRLRQQRPTFRAIILSIYDTPAFVQSALDAGASGYLTKRCG 107 Query: 141 LANEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E +++A H C + L + LT RE +L G + + Sbjct: 108 P--EELVQAVRTVGMGGHYLCADAV-KALRGGEPMPKVLEALTPREREVFELLVKGESVK 164 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L LS TV+ + + KL + I + A+ + Sbjct: 165 EIAYTLALSHKTVHVHRANVLGKLQCNSTIDLVHFALDNQLL 206 >gi|226311198|ref|YP_002771092.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226094146|dbj|BAH42588.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 12/181 (6%) Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 D + I NI ++ + ++ + E + E L Sbjct: 58 LDQELCSIRNIRVDLRNMPLIQQAIREQRAVL---LDSEAIRELPPHLV------YGAPY 108 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNL 174 + P+ G + GY + + ++ L R L Sbjct: 109 ALILPISYGPNVLGYAGISWHQDGCSGINHPLVQSLSAYCSMLGKVLATDSLR-PKTVKL 167 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE +Q G + +E+A +G+S TV Y+ SA KL NR Q +A AIR I Sbjct: 168 SRREVEVMQRMSWGESVKEMASWMGISEFTVQDYIKSALKKLGVQNRAQGVADAIRQRII 227 Query: 235 C 235 C Sbjct: 228 C 228 >gi|183600894|ref|ZP_02962387.1| hypothetical protein PROSTU_04501 [Providencia stuartii ATCC 25827] gi|188019220|gb|EDU57260.1| hypothetical protein PROSTU_04501 [Providencia stuartii ATCC 25827] Length = 256 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 18/219 (8%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L + + I N +Y+ + L I D F Sbjct: 24 LLSWLSSFIAFDNAIVYSFEKDAPP---RFLSKVEKRNSDSVNRIYQRGAYLM-DPFYQE 79 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 G + + + + + + + F +E Sbjct: 80 LQKGGGSQVLTLKELAPKGFYHTDYYLNFYRKTGWCDEAGLLLEITADRQLGIFFGNEDE 139 Query: 140 M-LANEVIIEAHGACYQVITDFLELFKKRSS-------------AARNLTERETSCLQLA 185 L+ + +++I +L K+ S LT RE ++L Sbjct: 140 PFLSEKSTQAPLKEAFEIIRSMAKLHKEISPNDVSSHYRLADMQTRFGLTPRECEIVELI 199 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +G S +IA+ L +S+ TV + + KLD ++ + Sbjct: 200 LEGKGSPQIAQSLFISLGTVKNHRKNIYQKLDINSQAEL 238 >gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294] gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056] gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058] gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059] gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294] gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 319 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|145559614|gb|ABP73639.1| SalRII [Salinispora tropica] Length = 225 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R+L+ RE ++L G ++ +IA +L +S TV +L + KLD +R+ A+ + Sbjct: 149 TRSLSGREFEVIELVAAGLSNAQIAGRLSISEGTVKRHLTNTYDKLDVRSRVAAVNRLAA 208 Query: 231 FGYI 234 G I Sbjct: 209 MGLI 212 >gi|326381413|ref|ZP_08203107.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326199660|gb|EGD56840.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 212 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 1/126 (0%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + + G + + + A V Sbjct: 87 VRALAVGADGFLLKDTPPAEIVAAIGRVRSGEPALSPSVTAA-LIKQVVDGRDATREPAG 145 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT+RE G ++ EIA +L +SV TV A++ KLDA NR+Q + Sbjct: 146 CDAVDMLTDREREVAVCLARGASNAEIAAELYMSVATVKAHISHIFTKLDASNRVQVAIR 205 Query: 228 AIRFGY 233 G Sbjct: 206 MHDAGL 211 >gi|297160587|gb|ADI10299.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 237 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 30/60 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L L G + EIAE LGLS T ++ KLDA +R Q + A G + Sbjct: 170 SDRERQVLTLVARGLNNAEIAEALGLSPLTAKTHVSRIMGKLDARDRAQLVIAAYECGLV 229 >gi|260576451|ref|ZP_05844441.1| two component transcriptional regulator, LuxR family [Rhodobacter sp. SW2] gi|259021334|gb|EEW24640.1| two component transcriptional regulator, LuxR family [Rhodobacter sp. SW2] Length = 214 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ K ++ +L++RE L+L +G +++E+ L L TV Y+ Sbjct: 130 ALAGRILNAMRSGAAAKTANPIDDLSKREEDILRLVAEGKSNKEVGLVLDLQEKTVKHYM 189 Query: 210 GSATVKLDAVNRIQAIAKAIRF 231 S KL NR++A A Sbjct: 190 TSILQKLHVRNRVEAAVFAREH 211 >gi|149187161|ref|ZP_01865459.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148838697|gb|EDL55636.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 227 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 47/95 (49%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + +LA E+ + V K S LT+RE ++L GDG ++ Sbjct: 121 LVSGFERILAGELWMSRKLVYEYVNFYRRRQCSKTSPYYTKLTKREQQIIKLLGDGASNT 180 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 EIA+ L +S +TV A+L +A K+ NR+QA+ Sbjct: 181 EIADTLFVSENTVKAHLHNAFKKIKVKNRLQALLW 215 >gi|158318665|ref|YP_001511173.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114070|gb|ABW16267.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 32/69 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L A L +RE LQL DG T+ +I +LGLS TV Y+ S KL Sbjct: 169 ERLRDGPSEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGL 228 Query: 219 VNRIQAIAK 227 +R QA Sbjct: 229 ASRTQAAVY 237 >gi|321157306|emb|CBW39288.1| Response regulator [Streptococcus pneumoniae] Length = 198 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G T +++ +K+ +S TV+ +L + KL NR +AI A + Sbjct: 133 EVLTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIAEQL 192 Query: 232 GY 233 GY Sbjct: 193 GY 194 >gi|319794441|ref|YP_004156081.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596904|gb|ADU37970.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 504 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +++A AC ++ + L+ERE L+ G ++E+A LG+S TV Sbjct: 416 VVDALLACAMSHAPSRSAAPQQQRGEQALSERELEVLRCISKGENTKEVARALGISPRTV 475 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +KL+ R A KA G I Sbjct: 476 RTHVERVFLKLECSTRAAATLKAATRGLI 504 >gi|307706263|ref|ZP_07643077.1| competence protein A [Streptococcus mitis SK321] gi|307618354|gb|EFN97507.1| competence protein A [Streptococcus mitis SK321] Length = 198 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G T +++ +K+ +S TV+ +L + KL NR +AI A + Sbjct: 133 EVLTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIAEQL 192 Query: 232 GY 233 GY Sbjct: 193 GY 194 >gi|294054526|ref|YP_003548184.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613859|gb|ADE54014.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 210 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 8/150 (5%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVII 147 + E+ + + R+ + V + E++I Sbjct: 57 DYQMPGENGLKCTERILAEDPEAKVVLISVFDLEEDVWNAVQCGVVGYLTKKAGNAEILI 116 Query: 148 EAHGACYQ---VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +A + R A++LT+RE L+L G +++EI +++ L++ Sbjct: 117 DAIREVAAGEEFFPAVIAKKLNRRKEAKDLTDRELKVLELLARGCSNKEIMDEMNLTLTM 176 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ KL A++R QA+ KA G + Sbjct: 177 VKYHIVQTREKLGALDRTQAVVKAFERGIL 206 >gi|257865603|ref|ZP_05645256.1| LuxR family transcriptional regulator [Enterococcus casseliflavus EC30] gi|257871940|ref|ZP_05651593.1| two-component system response regulator [Enterococcus casseliflavus EC10] gi|257799537|gb|EEV28589.1| LuxR family transcriptional regulator [Enterococcus casseliflavus EC30] gi|257806104|gb|EEV34926.1| two-component system response regulator [Enterococcus casseliflavus EC10] Length = 205 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + +S L+ RE +L G T++EIA +L LS T+ + KL NR Sbjct: 131 HLTRPETSLLEKLSPRECDIARLVAQGLTNKEIANQLFLSEGTIRNKTITIMEKLAVSNR 190 Query: 222 IQA 224 Q Sbjct: 191 TQL 193 >gi|195940868|ref|ZP_03086250.1| DNA-binding transcriptional activator UhpA [Escherichia coli O157:H7 str. EC4024] Length = 197 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE + G + +EIA +LGLS TV+ + + KL+ N ++ Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMSVKEIAVELGLSPKTVHVHRANLMEKLNVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|323160586|gb|EFZ46527.1| transcriptional regulator, LuxR family [Escherichia coli E128010] Length = 196 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 98 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I+ L +S TV A+L S +L+ NR QA Sbjct: 158 ISRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191 >gi|313679321|ref|YP_004057060.1| LuxR family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152036|gb|ADR35887.1| two component transcriptional regulator, LuxR family [Oceanithermus profundus DSM 14977] Length = 213 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 32/79 (40%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + +K LTERE S ++ G T ++IA L LS TV Y A K Sbjct: 132 LYAMIQHRQEKPEPTPEVLTERERSVVRGIAMGMTYKQIAADLELSEKTVATYRERAASK 191 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R A+ G + Sbjct: 192 LGLSSRAALTRWALEVGLL 210 >gi|326315054|ref|YP_004232726.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371890|gb|ADX44159.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 308 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 8/98 (8%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYT 190 L + A + + + L +++ A LT RET L G T Sbjct: 204 TALEPGQRLLARPLGASGLGETMLLLSVQAAGAEPAARLPRVDLTPRETEVLSWIAKGKT 263 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + +IA+ LG+S TVN +L KL R A A A Sbjct: 264 NRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAALA 301 >gi|284029283|ref|YP_003379214.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808576|gb|ADB30415.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 215 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +++ F + R++ LTERE ++ G T+ EI E+L +S+ TV ++L SA Sbjct: 134 ARLLEHFTQAAAPRTARPHPLTEREADVVRAVARGRTNGEITEELVVSLSTVKSHLASAQ 193 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL NR + A + Sbjct: 194 RKLGLRNRTELAVWAWENRLV 214 >gi|170782105|ref|YP_001710438.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169156674|emb|CAQ01832.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 228 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 14/108 (12%) Query: 140 MLANEVIIEAHG--------ACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185 E ++ A LE F A +LT RE LA Sbjct: 114 DADPEFLLAAIRTVHAGNSVIAASATRQLLEHFDPGSRPRVAPPAFASLTSREREIFVLA 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++ EIA+ LS TV ++ KL +R+Q + A Sbjct: 174 ARGLSNAEIAQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAFEHRL 221 >gi|92112197|ref|YP_572125.1| LuxR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795287|gb|ABE57426.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens DSM 3043] Length = 275 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 65/237 (27%), Gaps = 23/237 (9%) Query: 11 SSSLQELSPRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++SL L ++ F + P R + + ++ Sbjct: 30 AASLDAPDFWLAAVRTIGAHLAFDTWVALIFHHHRPPRILAESDEDDGADEALFQDYQRG 89 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D F ++ + R + + F L + Sbjct: 90 LYLLDPFYIDAKGRAREGLYTLADVAPQRFRHTEYYQRYFQRNIVADEVQFNCPLDAERT 149 Query: 130 GYVIF--TSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAAR------------ 172 + T F A ++ ++ + + + Sbjct: 150 LCLSLGSTRAFDHAALGLLSLIQPWMLALMRQRMHFEFEGEDGTPPGPHPWHPRPGTPRE 209 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE QL G +++EIA +L +SV TV A+ KL ++ + Sbjct: 210 LDSRYALTEREREVSQLMLGGSSTKEIARRLAISVETVRAHKKHLYAKLGINSQSEL 266 >gi|302549529|ref|ZP_07301871.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467147|gb|EFL30240.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + A +LTERE + L G G ++ EIA +L +S T ++ VKL+A Sbjct: 140 AARSKEPAAADALASLTEREREVMALVGIGLSNGEIARRLVVSPLTAKTHVSRTMVKLNA 199 Query: 219 VNRIQAIAKAIRFGYI 234 +R Q + A G + Sbjct: 200 RDRAQLVVLAYESGLV 215 >gi|239932032|ref|ZP_04688985.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440400|ref|ZP_06579790.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343295|gb|EFE70251.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARN-----LTE 176 L G+++ ++ L V + A + L R+S A LT Sbjct: 100 LRAGAAGFLLKRTDADTLVGAVRLVARSDTLLFPAAVRTLATEHARTSPAPPAWVARLTG 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE+ L+ G T+ EIA ++ + TV ++ S K A +R QA+ A G++ Sbjct: 160 RESEVLRHVAAGLTNAEIARRMEVGPATVKTHVASVLAKTGARDRTQAVIAAYEAGFL 217 >gi|213850451|ref|ZP_03381349.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 181 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 83 PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 142 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 143 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 176 >gi|212709063|ref|ZP_03317191.1| hypothetical protein PROVALCAL_00095 [Providencia alcalifaciens DSM 30120] gi|212687975|gb|EEB47503.1| hypothetical protein PROVALCAL_00095 [Providencia alcalifaciens DSM 30120] Length = 223 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 14/206 (6%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79 L+ I + I Y +N Q L+ + + D H Sbjct: 19 LNTIAHIIPISAAVYYLVNEQW-----QPESHVLYGISTRMHEQYLSAFSQH-DPLHPDH 72 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 F L ++ + E + +R + Sbjct: 73 FRGEDLRLV--KMPVEMRQQDKT-FFHDFMQPNHIADMAEIFIRRKNKIVAGISVLR-DT 128 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + ++ + L F + + + T +E + L +G +++ IA LG Sbjct: 129 PFTPQEVVRLNAILPIA---ELMTFDVKPDSLVSYTPKEQEIIHLVREGASNKRIALLLG 185 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAI 225 +S+ TV +L + K + NR + + Sbjct: 186 VSLSTVKTHLRNIFTKANVNNRTELV 211 >gi|297201229|ref|ZP_06918626.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712908|gb|EDY56942.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +A +LT+RET L L G +++E+AE+L ++ T+ ++ VKL +R Sbjct: 146 RLMAAAHTAYGDLTDRETEVLILIAQGLSNQEMAERLLVAESTIKTHVSRILVKLGLRDR 205 Query: 222 IQAIAKAIRFGYI 234 QA A + Sbjct: 206 TQAAVFAYEARLV 218 >gi|107101191|ref|ZP_01365109.1| hypothetical protein PaerPA_01002223 [Pseudomonas aeruginosa PACS2] gi|218892288|ref|YP_002441155.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234855|ref|ZP_04928178.1| hypothetical protein PACG_00729 [Pseudomonas aeruginosa C3719] gi|313110449|ref|ZP_07796334.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|126166786|gb|EAZ52297.1| hypothetical protein PACG_00729 [Pseudomonas aeruginosa C3719] gi|218772514|emb|CAW28296.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310882836|gb|EFQ41430.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 907 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 + + + G + +L S N ++ RE L+ Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA+ + LS T+ +L + KL +R QA+ K G + Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|327403986|ref|YP_004344824.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319494|gb|AEA43986.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 224 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE +QL + T++EIA+KL ++ TV + + K A N I AI+ Sbjct: 154 ELLSERELEIIQLICEQKTAKEIADKLFINQRTVEGHKNNMFAKTGAKNIAGLIIYAIQN 213 Query: 232 GYI 234 I Sbjct: 214 NII 216 >gi|331651293|ref|ZP_08352318.1| transcriptional regulator UhpA [Escherichia coli M718] gi|331051034|gb|EGI23086.1| transcriptional regulator UhpA [Escherichia coli M718] Length = 209 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147 I E+ L RL F I + + L E ++ Sbjct: 53 IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112 Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A H C I L + + A LT RE L G + +EIA KL Sbjct: 113 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV+ + + KL+ + I+ + A+ + Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206 >gi|256789144|ref|ZP_05527575.1| two-component system response regulator [Streptomyces lividans TK24] Length = 216 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G++ Sbjct: 154 TEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFV 213 >gi|228998002|ref|ZP_04157603.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229005552|ref|ZP_04163264.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228755739|gb|EEM05072.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228761735|gb|EEM10680.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] Length = 96 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+ E LQL GY +EIA L S T++ ++ KLD + ++A+ K I+ Sbjct: 27 EELTDSEKQILQLLCGGYKRKEIATMLYASERTISNHIQHIFDKLDVSSSLEAVTKGIQL 86 Query: 232 GYI 234 GYI Sbjct: 87 GYI 89 >gi|222096651|ref|YP_002530708.1| response regulator of salavaricin regulon [Bacillus cereus Q1] gi|221240709|gb|ACM13419.1| response regulator of salavaricin regulon [Bacillus cereus Q1] Length = 191 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ Sbjct: 120 PTETIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHIFDKLNVSSSLEAVT 179 Query: 227 KAIRFGYI 234 K I+ GYI Sbjct: 180 KGIKLGYI 187 >gi|295839362|ref|ZP_06826295.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197699050|gb|EDY45983.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 226 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-------RNLT 175 LG + + A E ++ A +IT FL AA LT Sbjct: 104 FLGKGAEPAELLGAIRTAAAGEALLSP-AATRSLITRFLAQAPGTGPAAGVDSARLAALT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G +++EIAE+L +S TV ++ A K+ A +R Q + A G + Sbjct: 163 GREREVLVQVAAGLSNDEIAERLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 221 >gi|74318804|ref|YP_316544.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74058299|gb|AAZ98739.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 210 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 37/74 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + + +SA LT RE + +G +++ IA K+ LS +TV +L + KL Sbjct: 131 IMQKMARGELNNSALSALTAREMEIVDHVKEGLSNKAIAYKMTLSENTVRNHLRNIMEKL 190 Query: 217 DAVNRIQAIAKAIR 230 NR+Q A++ Sbjct: 191 GLRNRVQVATLALK 204 >gi|86604925|ref|YP_473688.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86553467|gb|ABC98425.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 198 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 9/162 (5%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + P+ + ++ LP + Sbjct: 42 VEYCRRC--PVEVALLDVRMPDGDGILACQQIVELGLPVVVVMMTTFQEPGLIEAARRAG 99 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSE 192 L+ E +VI L ++ AR LT RE LQL +G ++ Sbjct: 100 AKGYLSKETDPA---ELARVIRQILSNPERDWLPARQELPKLTPRELCVLQLMKEGLANK 156 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA +LGLS+ TV Y +A KLDA +R+ A+ KA + G + Sbjct: 157 QIARRLGLSIETVKEYASAAYRKLDASDRVTALLKAQQLGIL 198 >gi|24213516|ref|NP_710997.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45658638|ref|YP_002724.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194296|gb|AAN48015.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45601882|gb|AAS71361.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 233 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++I F + + ++ +N LT+R+ L G T +IA++L +S HTV+ Sbjct: 140 RIADKIIRKFTKKEESKNQPIQNTLGLTKRKLQILNFIALGMTVSDIADELDISSHTVSR 199 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ K++ ++ +AI + R G I Sbjct: 200 HIEKIYKKMEVHSKSEAIIRGRRMGII 226 >gi|21219768|ref|NP_625547.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289773037|ref|ZP_06532415.1| two-component system response regulator [Streptomyces lividans TK24] gi|9368908|emb|CAB99140.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289703236|gb|EFD70665.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G++ Sbjct: 158 TEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFV 217 >gi|119716860|ref|YP_923825.1| response regulator receiver [Nocardioides sp. JS614] gi|119537521|gb|ABL82138.1| response regulator receiver [Nocardioides sp. JS614] Length = 207 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 37/76 (48%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + S LT RET L L +G +++IA +L +S TV A+L SA ++ Sbjct: 132 AARALLGVRAGSPQVQLTSRETEVLTLVREGLANKQIARRLDISERTVKAHLTSAFARIG 191 Query: 218 AVNRIQAIAKAIRFGY 233 +R QA A R G Sbjct: 192 VADRTQAALWAERNGL 207 >gi|126174023|ref|YP_001050172.1| response regulator receiver protein [Shewanella baltica OS155] gi|153000313|ref|YP_001365994.1| response regulator receiver protein [Shewanella baltica OS185] gi|160874947|ref|YP_001554263.1| LuxR family transcriptional regulator [Shewanella baltica OS195] gi|217973656|ref|YP_002358407.1| LuxR family transcriptional regulator [Shewanella baltica OS223] gi|304411428|ref|ZP_07393042.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307305250|ref|ZP_07584998.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|125997228|gb|ABN61303.1| transcriptional regulator, LuxR family [Shewanella baltica OS155] gi|151364931|gb|ABS07931.1| response regulator receiver protein [Shewanella baltica OS185] gi|160860469|gb|ABX49003.1| transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|217498791|gb|ACK46984.1| transcriptional regulator, LuxR family [Shewanella baltica OS223] gi|304350283|gb|EFM14687.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306911553|gb|EFN41978.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|315267183|gb|ADT94036.1| transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 211 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 Y+ + L I+ H + + + LT RE LQ Sbjct: 102 GVFYLDAGLTEISLGFSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLT 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 G T+ +IA +L +S T+ +L K+ +R QAIA A Sbjct: 162 GSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|284007635|emb|CBA73286.1| type III secretion two-component response regulator [Arsenophonus nasoniae] Length = 214 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + +IAE L + + TV + + KLDA N + A R G+ Sbjct: 155 LTHREKQVLKLIFEGKRNRDIAEALVIGLKTVETHRMNIMRKLDAHNVADLMKWAHRMGF 214 >gi|262407478|ref|ZP_06084026.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|262354286|gb|EEZ03378.1| transcriptional regulator [Bacteroides sp. 2_1_22] Length = 219 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 C V L +A+ LT+ E + L+ G T++EIA + LS HT+N Sbjct: 125 YICNHVSNLLLSGASSPLAASSVDDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTIN 184 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL N +A A+R G + Sbjct: 185 SHRKNIFRKLGVNNVHEATKYAMRAGIV 212 >gi|153824418|ref|ZP_01977085.1| transcriptional regulator UhpA [Vibrio cholerae MZO-2] gi|149741972|gb|EDM56001.1| transcriptional regulator UhpA [Vibrio cholerae MZO-2] Length = 208 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + + I E+ L RL F I + G Sbjct: 40 FHALTQAE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + S+ + V C + + ++ +LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 157 VKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205 >gi|150388326|ref|YP_001318375.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948188|gb|ABR46716.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 205 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +S LT RE L G G ++ EI ++L +S HTV ++ + KL+ +R Q Sbjct: 135 DIRENSHLDELTPRERDVLTELGKGLSNFEIGKQLFISEHTVKKHVSNILSKLELNHRTQ 194 Query: 224 AIAK 227 A Sbjct: 195 AALF 198 >gi|108803548|ref|YP_643485.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764791|gb|ABG03673.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE L L G ++ ++A +L L+ TV +L + KL+ +R +A+ KA Sbjct: 147 PEGCELSERELEILLLVARGLSNRQVASELHLAEATVKRHLANVYAKLNVGSRGEAVRKA 206 Query: 229 IRFGY 233 + G+ Sbjct: 207 LSKGW 211 >gi|310659628|ref|YP_003937349.1| transcriptional regulator yhcz [Clostridium sticklandii DSM 519] gi|308826406|emb|CBH22444.1| putative transcriptional regulator YhcZ [Clostridium sticklandii] Length = 222 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + L G ++ EIA+ L LS TV ++ + K++ +R Q IA A Sbjct: 155 DLLTRREYEIVGLISQGKSNLEIADDLFLSERTVKNHIHNILKKVNLQDRTQ-IAIA 210 >gi|307277198|ref|ZP_07558302.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] gi|306506128|gb|EFM75294.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] Length = 197 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 39/66 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L++RE L+ A +G+ +EIAE+L +S TVN +L S KL+ + I AI +A Sbjct: 127 STLDVLSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQA 186 Query: 229 IRFGYI 234 I G I Sbjct: 187 IELGII 192 >gi|296130423|ref|YP_003637673.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022238|gb|ADG75474.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 223 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + ++ LT+RE L G ++ +I ++L LS TV + Sbjct: 143 HAARADAGVAPRQVDTGPVLTKREIEVLVGMSHGRSNAQIGQELFLSEDTVKTHARRLFR 202 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A +R QA+A +R G I Sbjct: 203 KLGASDRAQAVAIGLRRGII 222 >gi|256617156|ref|ZP_05474002.1| salavaricin two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|257087415|ref|ZP_05581776.1| salavaricin two-component system response regulator [Enterococcus faecalis D6] gi|312899812|ref|ZP_07759131.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|256596683|gb|EEU15859.1| salavaricin two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|256995445|gb|EEU82747.1| salavaricin two-component system response regulator [Enterococcus faecalis D6] gi|295113419|emb|CBL32056.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Enterococcus sp. 7L76] gi|311293062|gb|EFQ71618.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|315025432|gb|EFT37364.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2137] gi|315166424|gb|EFU10441.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1341] Length = 197 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 39/66 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L++RE L+ A +G+ +EIAE+L +S TVN +L S KL+ + I AI +A Sbjct: 127 STLDVLSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQA 186 Query: 229 IRFGYI 234 I G I Sbjct: 187 IELGII 192 >gi|90411062|ref|ZP_01219075.1| two-component response regulator of nitrate reduction [Photobacterium profundum 3TCK] gi|90327908|gb|EAS44229.1| two-component response regulator of nitrate reduction [Photobacterium profundum 3TCK] Length = 197 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 105 SVRLEGGLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 RL I + + G + + +L ++ E A V+ + Sbjct: 64 VARLRRDFKSVKMICLTMHDEPEYAEGAIAAGANGYVLKHQAGEELVKAVDTVMNGGRYI 123 Query: 164 FKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT R+ S LQL G +++++AE+L +S TV + + L+ Sbjct: 124 SNSIDMTSEKPTLTARQLSVLQLLVKGRSAKQVAEELFISSRTVEFHKYAMMRLLNVKTS 183 Query: 222 IQAIAKAIRFGYI 234 + I AI G I Sbjct: 184 AELIQYAINHGLI 196 >gi|298250029|ref|ZP_06973833.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548033|gb|EFH81900.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 855 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTERETSCLQ 183 Y+ + + A G ++ F + + + L++RE L Sbjct: 745 YIAHLGTQSDQQSLTLAYAEGQNLPLVEAFTARHRGQPVPQDSPMAHSTDLSQRELEVLH 804 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++++IA +L +S TV+A++ S KL +R A+ Sbjct: 805 LLSQGLSNKQIAAQLVISPRTVDAHVRSIYNKLALNSRAAVARYALEHHL 854 >gi|260220323|emb|CBA27745.1| hypothetical protein Csp_A03820 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 267 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 34/76 (44%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H A QVI + A LTERE L+ G T+ EI L +S TV ++ Sbjct: 182 HQAPGQVIAPVTYTNGNLPTEADVLTEREAEILKWVALGKTNPEIGSILEISAFTVKNHM 241 Query: 210 GSATVKLDAVNRIQAI 225 KLD NR QA+ Sbjct: 242 QRVFKKLDVSNRAQAV 257 >gi|229174002|ref|ZP_04301538.1| Response regulator [Bacillus cereus MM3] gi|228609334|gb|EEK66620.1| Response regulator [Bacillus cereus MM3] Length = 566 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ +G + IA KL LS T+ Y + KL NR +AI KA Sbjct: 505 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNREEAIKKARTEN 564 Query: 233 YI 234 + Sbjct: 565 IL 566 >gi|154493926|ref|ZP_02033246.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC 43184] gi|154086186|gb|EDN85231.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC 43184] Length = 202 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + + L+ RE + G T+ EIA++L LS HTV + + KL + Sbjct: 125 EEGENEDQQTLSSREKEIVICVVKGMTNREIADRLYLSTHTVITHRRNIARKLQVHSASG 184 Query: 224 AIAKAIRFGYI 234 AI I Sbjct: 185 LTVYAIVNKLI 195 >gi|157962375|ref|YP_001502409.1| two component LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847375|gb|ABV87874.1| two component transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 219 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-------KRSSA 170 + + + +G++ +S LA +EA + +EL + + +S Sbjct: 94 LTISRAIHYGSSGFIPKSSSMETLA--EALEAVLFGDVWLPQGVELQEIDEDDTNQMASK 151 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ A++ Sbjct: 152 LADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV-IALQ 210 Query: 231 F 231 Sbjct: 211 Q 211 >gi|152988849|ref|YP_001348901.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964007|gb|ABR86032.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 907 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 + + + G + +L S N ++ RE L+ Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA+ + LS T+ +L + KL +R QA+ K G + Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|73538584|ref|YP_298951.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] gi|72121921|gb|AAZ64107.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] Length = 913 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +LT RE LQ+ G + IAEKL LS TV ++L KL A NR +A+A Sbjct: 849 SDSLTARELEVLQMLSAGLRNRAIAEKLFLSELTVKSHLRKINAKLGAQNRTEAVAIGRS 908 Query: 231 FGYI 234 G I Sbjct: 909 RGLI 912 >gi|113970651|ref|YP_734444.1| LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|114047880|ref|YP_738430.1| LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113885335|gb|ABI39387.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4] gi|113889322|gb|ABI43373.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 211 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 Y+ + L I+ H + + + LT RE LQ Sbjct: 102 GVFYLDAGLTEISLGLSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLS 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 G T+ +IA +L +S T+ +L K+ +R QAIA A Sbjct: 162 GSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|238793307|ref|ZP_04636933.1| hypothetical protein yinte0001_34000 [Yersinia intermedia ATCC 29909] gi|238727276|gb|EEQ18804.1| hypothetical protein yinte0001_34000 [Yersinia intermedia ATCC 29909] Length = 210 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + LT RE L+L +G + IA L +S TV + + KLD Sbjct: 138 LAQGTDARQPVLTPRERQILKLITEGACNRIIAAHLSISQKTVETHRLNMMKKLDVHKVA 197 Query: 223 QAIAKAIRFGY 233 + I + R G Sbjct: 198 ELIHWSYRLGL 208 >gi|268592194|ref|ZP_06126415.1| transcriptional regulator, LuxR family [Providencia rettgeri DSM 1131] gi|291312597|gb|EFE53050.1| transcriptional regulator, LuxR family [Providencia rettgeri DSM 1131] Length = 247 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 18/219 (8%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L + + I N +Y+ + + ++ + DS + D F Sbjct: 24 LLSWLSSLIAFDNAIVYSFEKGAP----PRFLSKVERRNSDSINRIYQRGAYLMDPFYQE 79 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 G + + + + + ++ + F +E Sbjct: 80 IQKGGASKVLTLKELAPKGFYHTDYYLNFYRKTGWCDEAGLLLDISTNRQLGIFFGNEDR 139 Query: 140 MLANEVIIEAHGA-CYQVITDFLELFKKRSSAARN-------------LTERETSCLQLA 185 +E +A + +I ++L K S ++ + LT RE ++L Sbjct: 140 PFFSEKYTQAPLKDAFDIIRSMVKLHKDVSPSSVSNHYQNTDMQTRFGLTPRECEVVELI 199 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G S +IA+ L +S+ TV + + KL ++++ Sbjct: 200 LAGKGSPQIAQALFISLGTVKNHRKNIYQKLSINSQVEL 238 >gi|254240102|ref|ZP_04933424.1| hypothetical protein PA2G_00742 [Pseudomonas aeruginosa 2192] gi|126193480|gb|EAZ57543.1| hypothetical protein PA2G_00742 [Pseudomonas aeruginosa 2192] Length = 907 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 + + + G + +L S N ++ RE L+ Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA+ + LS T+ +L + KL +R QA+ K G + Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|116049710|ref|YP_791485.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584931|gb|ABJ10946.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 907 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 + + + G + +L S N ++ RE L+ Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA+ + LS T+ +L + KL +R QA+ K G + Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|331001433|ref|ZP_08325053.1| putative transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] gi|329568315|gb|EGG50126.1| putative transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] Length = 218 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 13/124 (10%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKR 167 G ++ G + + + A Q + + + Sbjct: 98 GHGDVDMAVLALKHGAQDFML-------KPVDPQRLKGAVFQACQSDLLHFLRSQKEEAE 150 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A +L++RE QL G ++IAE+LG S TV + KL + Sbjct: 151 REATSSLSQREREVAQLLAQGLLYKQIAERLGCSERTVKFHKARIAEKLGVKTSAE---I 207 Query: 228 AIRF 231 A+R Sbjct: 208 ALRL 211 >gi|325918348|ref|ZP_08180482.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325535427|gb|EGD07289.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 922 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 41/83 (49%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A+ +ERE L GY++++IA L LS +TV +L + Sbjct: 826 RALTIQALLERLSGDEDPASDVFSERELEVLAQLARGYSNKQIARHLHLSQNTVKFHLKN 885 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 886 LYRKLDARSRESALAQALQRGVL 908 >gi|307328780|ref|ZP_07607951.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885588|gb|EFN16603.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 217 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 36/85 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 Q + A +T RE L L G G +++EIA++L L V TV + Sbjct: 130 LDRIVAQAVHTRSASDAGPDIPAPAITPREREVLGLLGVGLSNKEIADRLHLGVTTVKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + S K NRI+ A+R G Sbjct: 190 VASLMTKTGRDNRIRLAVLAVRAGI 214 >gi|308070133|ref|YP_003871738.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305859412|gb|ADM71200.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa E681] Length = 216 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L++RE L L GY ++E+AEKL +SV TV A KL+ +R + + A+ Sbjct: 150 PYEILSKRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLRSRPELVQYAL 209 Query: 230 RFGYI 234 + + Sbjct: 210 KKKML 214 >gi|288958203|ref|YP_003448544.1| two-component response regulator [Azospirillum sp. B510] gi|288910511|dbj|BAI72000.1| two-component response regulator [Azospirillum sp. B510] Length = 254 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 17/159 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + + RL L + L + + L ++ +A Sbjct: 80 LDLQNGGDEEADGMRRLRALLPETRMVILTSDLCTRRLANALEAGADGYLMKDLSSDALA 139 Query: 152 ACYQVITDFLELFKKRSSAA-----------------RNLTERETSCLQLAGDGYTSEEI 194 +++ ++F +A + L++RE L+ +G +++ I Sbjct: 140 QSLKLVMMGEKVFPTHLAALLISGRVNGNGTEMPVSRKGLSQREVQILRCLLNGDSNKMI 199 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A L ++ TV +L S K++A NR QA A+ G Sbjct: 200 ANHLNITEATVKVHLKSLLRKINASNRTQAAIWALNNGI 238 >gi|258647693|ref|ZP_05735162.1| transcriptional regulator, LuxR family domain protein [Prevotella tannerae ATCC 51259] gi|260852526|gb|EEX72395.1| transcriptional regulator, LuxR family domain protein [Prevotella tannerae ATCC 51259] Length = 315 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE + G +++EIAE L +S +TV + + KL AI Sbjct: 246 EELSARERDVIISIVQGMSNKEIAEHLCISTNTVITHRRNIARKLQIHTPAGLTIYAIVN 305 Query: 232 GYI 234 G + Sbjct: 306 GLV 308 >gi|239989357|ref|ZP_04710021.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446370|ref|ZP_06585760.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349317|gb|EFE76221.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 229 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G + R LT RE L G G ++ EIA +L L TV A Sbjct: 139 RVAGRVIAGMRAHRAAHPHR--PLERLTGREREVLAGIGTGLSNAEIAGRLHLVEGTVKA 196 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL NR++A A G + Sbjct: 197 HVSAVLAKLGVRNRVEAAIAAHEAGLL 223 >gi|261339343|ref|ZP_05967201.1| putative csgAB operon transcriptional regulatory protein [Enterobacter cancerogenus ATCC 35316] gi|288318141|gb|EFC57079.1| putative csgAB operon transcriptional regulatory protein [Enterobacter cancerogenus ATCC 35316] Length = 216 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|168749814|ref|ZP_02774836.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4113] gi|168756893|ref|ZP_02781900.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4401] gi|168768302|ref|ZP_02793309.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4486] gi|168776343|ref|ZP_02801350.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4196] gi|168783217|ref|ZP_02808224.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4076] gi|195938573|ref|ZP_03083955.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4024] gi|208808046|ref|ZP_03250383.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4206] gi|208815487|ref|ZP_03256666.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4045] gi|208822917|ref|ZP_03263235.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4042] gi|209400645|ref|YP_002269004.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4115] gi|254791544|ref|YP_003076381.1| putative response regulator; hexosephosphate transport [Escherichia coli O157:H7 str. TW14359] gi|187768261|gb|EDU32105.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4196] gi|188015874|gb|EDU53996.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4113] gi|188999335|gb|EDU68321.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4076] gi|189356031|gb|EDU74450.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4401] gi|189362357|gb|EDU80776.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4486] gi|208727847|gb|EDZ77448.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4206] gi|208732135|gb|EDZ80823.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4045] gi|208737110|gb|EDZ84794.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4042] gi|209162045|gb|ACI39478.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7 str. EC4115] gi|254590944|gb|ACT70305.1| putative response regulator; hexosephosphate transport [Escherichia coli O157:H7 str. TW14359] Length = 209 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 17/157 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLANEV 145 I E+ L RL F I + G + ++ E Sbjct: 53 IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPIFVQSALDAGASGYLTKRCGP--EE 110 Query: 146 IIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +++A H C I L + + A LT RE +L G + +EIA K Sbjct: 111 LVQAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFELLVKGDSVKEIAFK 169 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV+ + + KL+ + I+ + A+ + Sbjct: 170 LELSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206 >gi|148652475|ref|YP_001279568.1| two component LuxR family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571559|gb|ABQ93618.1| two component transcriptional regulator, LuxR family [Psychrobacter sp. PRwf-1] Length = 219 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 3/96 (3%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEE 193 E + L + + L + + NLT RE +++ G++++ Sbjct: 119 EQVALDIRKALRGELVVSSRLAAVLAQALRTPNLDDIVSNLTSRELQVVKMIAKGHSNKM 178 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 I +LG+S TV ++ K + R+ A+ Sbjct: 179 IGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAV 214 >gi|4218542|emb|CAA09631.1| putative two-component response regulator [Streptomyces violaceoruber] Length = 202 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + A ++ I L L SA LTERE L+L +G + EIA Sbjct: 105 DASPQDLAEAVRRIAAGHRAIDPQLALA-AWDSAESPLTEREMEVLRLTAEGDEAPEIAA 163 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV YL S KL+A NR+ A+ A G++ Sbjct: 164 RLHLSTGTVRNYLTSVVTKLNARNRVDAVRIAHESGWL 201 >gi|312967916|ref|ZP_07782128.1| transcriptional regulatory protein uhpA [Escherichia coli 2362-75] gi|312287477|gb|EFR15385.1| transcriptional regulatory protein uhpA [Escherichia coli 2362-75] Length = 196 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166 A I V G F S+ E+I H + D K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 ASGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|303238514|ref|ZP_07325048.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593912|gb|EFL63626.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 215 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L DG + +IA L +S TV + KL+ +RIQ A++ Sbjct: 155 LTPREIEIINLVVDGKDNRDIANSLFISEGTVRNTISLILKKLNLRDRIQLAVYAVKN 212 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074066|gb|ADJ63465.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + LT+RE L +G ++++IA +L LSV TV + + KL+ Sbjct: 137 AALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLN 196 Query: 218 AVNRIQAIAKAIR 230 + + I A+ Sbjct: 197 IDGQAELIKFAVE 209 >gi|298251835|ref|ZP_06975638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546427|gb|EFH80295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1065 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + + +LT RE L L G +++EIA+ L +S+ TV ++G KL A NR Sbjct: 994 MASREPALVVSLTRREQEVLCLLAAGASNQEIAQTLVISLDTVKKHVGRLLDKLGATNRT 1053 Query: 223 QAIAKAIRFGYI 234 QAIA+A + Sbjct: 1054 QAIAQARARSLL 1065 >gi|239820081|ref|YP_002947266.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239804934|gb|ACS22000.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 206 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 8/135 (5%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDFL-- 161 + GG I R + I + +++A + + +L Sbjct: 70 VAGGFRMPRVIVLTRRDKEGEVMRAIASGAHGYVRQDADPAELMDAIRHVARGGSLYLCK 129 Query: 162 --ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + T RE L+ G ++ IA +L +S +TV A++ KL Sbjct: 130 GTKALIRHGKPCVGFTAREEDVLRYLVKGDCNKGIARELDISANTVKAHVARICEKLHVG 189 Query: 220 NRIQAIAKAIRFGYI 234 +R Q AKA + G + Sbjct: 190 SRAQVAAKATQRGLV 204 >gi|209883854|ref|YP_002287710.1| two component transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] gi|209872050|gb|ACI91846.1| two component transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] Length = 224 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIVAAK 211 >gi|149374681|ref|ZP_01892455.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter algicola DG893] gi|149361384|gb|EDM49834.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter algicola DG893] Length = 221 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ +D + +K + +LT ++ L + +G +++IA L +S T+ A++ + Sbjct: 137 RMHSDMTDFSEKLA----SLTPQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFR 192 Query: 215 KLDAVNRIQAIAKAIRF 231 KL NR QA+ AI+ Sbjct: 193 KLGVRNRTQAV-IAIQQ 208 >gi|111026189|ref|YP_708472.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|40787202|gb|AAR90120.1| response regulator [Rhodococcus sp. DK17] gi|110825032|gb|ABH00314.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 209 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ RE L++ G T+ EIAE+L +S TV ++ S KL R + A Sbjct: 146 DSLSSRELDVLKMIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDA 205 Query: 232 GYI 234 G + Sbjct: 206 GLL 208 >gi|88801325|ref|ZP_01116853.1| putative nitrate/nitrite DNA-binding response regulator [Polaribacter irgensii 23-P] gi|88781983|gb|EAR13160.1| putative nitrate/nitrite DNA-binding response regulator [Polaribacter irgensii 23-P] Length = 221 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LTERE + L+L ++ EIAEK+ +S HTV +Y KL+ N + A+++ Sbjct: 159 DSLTEREKNVLRLVSKELSTSEIAEKMNISHHTVESYRKKLLRKLNVKNSVGLAIYAVKY 218 Query: 232 GYI 234 + Sbjct: 219 NLV 221 >gi|294646863|ref|ZP_06724484.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294808898|ref|ZP_06767627.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|292637808|gb|EFF56205.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294443940|gb|EFG12678.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] Length = 233 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 C V L +A+ LT+ E + L+ G T++EIA + LS HT+N Sbjct: 139 YICNHVSNLLLSGASSPLAASSVDDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTIN 198 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL N +A A+R G + Sbjct: 199 SHRKNIFRKLGVNNVHEATKYAMRAGIV 226 >gi|296136908|ref|YP_003644150.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] gi|294341079|emb|CAZ89476.1| putative Nitrate/nitrite response regulator protein narL [Thiomonas sp. 3As] gi|295797030|gb|ADG31820.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] Length = 225 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE G +++ IA +L ++ TV ++ S KLD +R+Q A G Sbjct: 163 PLSPRERQIAAAIARGASNKVIARELDIAETTVKVHVQSILRKLDLSSRVQIAVYASEHG 222 Query: 233 Y 233 Sbjct: 223 L 223 >gi|94309557|ref|YP_582767.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353409|gb|ABF07498.1| Two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 231 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 I++ G + E+ + A L+ RE L L G T+ EIAE L LS Sbjct: 140 ARRILDLAGK-MAPLAGGAEVQAGPTVGAPPLSAREIEILSLVSKGLTNREIAEVLSLSK 198 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ ++ KL +R QA+ +A G + Sbjct: 199 LTVECHIRNSYKKLAVHSRTQAVFEARASGLL 230 >gi|89902955|ref|YP_525426.1| ATP-dependent transcription regulator LuxR [Rhodoferax ferrireducens T118] gi|89347692|gb|ABD71895.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Rhodoferax ferrireducens T118] Length = 894 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 7/145 (4%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 + + + + + + I ++ FL+ ++ A Sbjct: 754 ADDDRDGAFETLREVILTAQRIGVHRSIL----DAGGDLQALLP--RFLVSSHCNAELAI 807 Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + D E K ++ A LTERE L L G +++E+A + +S TV +L Sbjct: 808 SVRRLLAVDANEADKANKTGVAGTLTERERDVLMLVASGQSNKEVARSMNISAETVKTHL 867 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL R QA+ A G I Sbjct: 868 KSIFGKLGVQQREQAVVLARAVGLI 892 >gi|116670683|ref|YP_831616.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116610792|gb|ABK03516.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 254 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 18/214 (8%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L + +Q ++ F + + S+ + I LH Sbjct: 24 LDDHELVRRGLQELLEGEGFQV--VGSSGSAVEATRRIPALHPDVSVLDARLPDGTGIEV 81 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + L +I S +E + G + G +L G G + Sbjct: 82 CRDVRSVDPNLNCLILTSFDDEQAL--RGAVLAGARGYVLKEIG------------GTDL 127 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + A E + + G ++ + ++ LT +E L+L G G T+ + Sbjct: 128 IGALRRAAAGESLFD-DGVAASIVESLVTP-QQVDPRIAGLTPQERRVLELVGGGLTNRQ 185 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 IA ++ L+ TV Y+ S KL R QA Sbjct: 186 IAAEMFLAEKTVKNYVSSLLAKLGFERRTQAAVY 219 >gi|323934698|gb|EGB31088.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] Length = 200 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|302391963|ref|YP_003827783.1| LuxR family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302204040|gb|ADL12718.1| transcriptional regulator, LuxR family [Acetohalobium arabaticum DSM 5501] Length = 259 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 24/226 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L LI+ I + + N + + D + Y D Sbjct: 32 VLELIKALIAYDSSNFFVYNKLNSQFEKTTSVNVDSRVIDDYINY-----FQYIDGLKEK 86 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 + P + + + + + + G + F + Sbjct: 87 TFNQPHPSKSTQVMDYSK-WKKTEFFNDFLRVNGCYYLCGVDLHYNDQLLGTLSFYRDEH 145 Query: 140 MLAN-----------EVIIEAHGACYQVITDFLELFK-------KRSSAARNLTERETSC 181 + V+ E+ + + + RE Sbjct: 146 SPDFNLKELLYLELLRPHLSNQLHKLIVLEKRSEIEEVDYSKLIEIEGLLYKFSNREIEV 205 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L G +EEIA +L +S++TV +L S K+ +R Q +K Sbjct: 206 AKLVVSGLNNEEIAGELFISINTVKKHLYSIFRKIGVNSRAQLTSK 251 >gi|271966802|ref|YP_003340998.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509977|gb|ACZ88255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L G ++ EIA +L +S+ TV ++G+ KL+A +R +A+ A Sbjct: 145 PGIDRLTSREADVLRLMTRGLSNGEIAGELVISMETVKTHVGNVLAKLEARDRTRAVITA 204 Query: 229 IRFGYI 234 G++ Sbjct: 205 YESGFV 210 >gi|297192036|ref|ZP_06909434.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719515|gb|EDY63423.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 10/116 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++A + + LT R Sbjct: 122 LLQAVRTVARGEGMIAPAVTRRLIAE----------FAAPGPVRSADAPDPAVLDTLTRR 171 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L G+G ++ EIA +L ++ TV ++ KL+ +R+QA A G Sbjct: 172 EREVLSCLGEGMSNAEIAARLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 227 >gi|170726233|ref|YP_001760259.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169811580|gb|ACA86164.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 210 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + +LT RE LQ G T+ +IA +L +S T+ +L A K+ +R QAIA A Sbjct: 144 SESLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 201 >gi|91213026|ref|YP_543012.1| transcriptional regulator YhjB [Escherichia coli UTI89] gi|117625803|ref|YP_859126.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli APEC O1] gi|218560595|ref|YP_002393508.1| DNA-binding response regulator in two-component regulatory system [Escherichia coli S88] gi|237703288|ref|ZP_04533769.1| transcriptional regulator YhjB [Escherichia sp. 3_2_53FAA] gi|306816128|ref|ZP_07450266.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli NC101] gi|91074600|gb|ABE09481.1| hypothetical transcriptional regulator YhjB [Escherichia coli UTI89] gi|115514927|gb|ABJ03002.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli APEC O1] gi|218367364|emb|CAR05143.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli S88] gi|226902552|gb|EEH88811.1| transcriptional regulator YhjB [Escherichia sp. 3_2_53FAA] gi|294489845|gb|ADE88601.1| transcriptional regulator, LuxR family [Escherichia coli IHE3034] gi|305850524|gb|EFM50981.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli NC101] gi|307628599|gb|ADN72903.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli UM146] gi|315286211|gb|EFU45647.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3] gi|323949761|gb|EGB45645.1| luxR family protein regulatory protein [Escherichia coli H252] gi|323954938|gb|EGB50718.1| luxR family protein regulatory protein [Escherichia coli H263] Length = 200 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 242 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + T RE S LQL +G ++EIA +L S+ V Y+ +K +R + + A+ Sbjct: 179 PSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALEN 238 Query: 232 GYI 234 + Sbjct: 239 NLV 241 >gi|22124427|ref|NP_667850.1| response regulator/transcription activator [Yersinia pestis KIM 10] gi|45440263|ref|NP_991802.1| putative two-component response regulator [Yersinia pestis biovar Microtus str. 91001] gi|108810019|ref|YP_653935.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|108813574|ref|YP_649341.1| two-component response regulator [Yersinia pestis Nepal516] gi|145600963|ref|YP_001165039.1| two-component response regulator [Yersinia pestis Pestoides F] gi|150260698|ref|ZP_01917426.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|162420249|ref|YP_001608242.1| putative DNA-binding response regulator EsrB [Yersinia pestis Angola] gi|165926713|ref|ZP_02222545.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Orientalis str. F1991016] gi|165936411|ref|ZP_02224979.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Orientalis str. IP275] gi|166010556|ref|ZP_02231454.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Antiqua str. E1979001] gi|166213920|ref|ZP_02239955.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Antiqua str. B42003004] gi|167402479|ref|ZP_02307934.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418702|ref|ZP_02310455.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426185|ref|ZP_02317938.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469425|ref|ZP_02334129.1| putative DNA-binding response regulator EsrB [Yersinia pestis FV-1] gi|218927460|ref|YP_002345335.1| putative two-component response regulator [Yersinia pestis CO92] gi|229836506|ref|ZP_04456672.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|229840115|ref|ZP_04460274.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842196|ref|ZP_04462351.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229904063|ref|ZP_04519176.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|270488948|ref|ZP_06206022.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294502330|ref|YP_003566392.1| putative two-component response regulator [Yersinia pestis Z176003] gi|21957213|gb|AAM84101.1|AE013653_1 response regulator/transcription activator [Yersinia pestis KIM 10] gi|45435119|gb|AAS60679.1| putative two-component response regulator [Yersinia pestis biovar Microtus str. 91001] gi|108777222|gb|ABG19741.1| two-component response regulator [Yersinia pestis Nepal516] gi|108781932|gb|ABG15990.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|115346071|emb|CAL18939.1| putative two-component response regulator [Yersinia pestis CO92] gi|145212659|gb|ABP42066.1| two-component response regulator [Yersinia pestis Pestoides F] gi|149290106|gb|EDM40183.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|162353064|gb|ABX87012.1| putative DNA-binding response regulator EsrB [Yersinia pestis Angola] gi|165915527|gb|EDR34136.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Orientalis str. IP275] gi|165921336|gb|EDR38560.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990646|gb|EDR42947.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Antiqua str. E1979001] gi|166204895|gb|EDR49375.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Antiqua str. B42003004] gi|166962696|gb|EDR58717.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048129|gb|EDR59537.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054896|gb|EDR64698.1| putative DNA-binding response regulator EsrB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679833|gb|EEO75936.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|229690506|gb|EEO82560.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229696481|gb|EEO86528.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706190|gb|EEO92198.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|262360410|gb|ACY57131.1| putative two-component response regulator [Yersinia pestis D106004] gi|262364360|gb|ACY60917.1| putative two-component response regulator [Yersinia pestis D182038] gi|270337452|gb|EFA48229.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294352789|gb|ADE63130.1| putative two-component response regulator [Yersinia pestis Z176003] gi|320013881|gb|ADV97452.1| putative two-component response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 210 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + LT RE L+L +G + IA +L +S TV + + KLD Sbjct: 138 LTQGSDNTPPVLTPRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVA 197 Query: 223 QAIAKAIRFGY 233 + I + R G Sbjct: 198 ELIHWSYRLGL 208 >gi|329954342|ref|ZP_08295434.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] gi|328527610|gb|EGF54603.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] Length = 233 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 151 GACYQVITDFLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 C V L + ++ L T E S L+ G T++EIA + LS HTV Sbjct: 138 FICNHVSNLLLSGNNQPAAPHPALQDALLTPAERSILKEIALGKTTKEIAAERNLSFHTV 197 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N++ + KL N +A A++ G + Sbjct: 198 NSHRKNIFRKLSVNNAHEATKYAMKAGIV 226 >gi|256421426|ref|YP_003122079.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256036334|gb|ACU59878.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 207 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +T RE LQL G G T+ +IA++L +S HTV ++ + K N + A Sbjct: 143 AIPRITRREKEILQLIGKGLTTMQIADQLFISTHTVESHRKNLMEKFGVNNTTSVVKLAS 202 Query: 230 RFGYI 234 + + Sbjct: 203 EYKLL 207 >gi|147675562|ref|YP_001218191.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|146317445|gb|ABQ21984.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|227014589|gb|ACP10799.1| transcriptional regulator,LuxR family [Vibrio cholerae O395] Length = 209 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|262370175|ref|ZP_06063502.1| response regulator [Acinetobacter johnsonii SH046] gi|262315214|gb|EEY96254.1| response regulator [Acinetobacter johnsonii SH046] Length = 211 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L ++S L+ERE + + +++EI++KL +SV TVN Y KL+ + + Sbjct: 138 LSDTQTSPFDALSEREMQVAMMVVNCISAQEISDKLFVSVKTVNTYRYRIFEKLNIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|215488797|ref|YP_002331228.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli O127:H6 str. E2348/69] gi|218691804|ref|YP_002400016.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli ED1a] gi|312968158|ref|ZP_07782368.1| bacterial regulatory s, luxR family protein [Escherichia coli 2362-75] gi|215266869|emb|CAS11310.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli O127:H6 str. E2348/69] gi|218429368|emb|CAR10185.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli ED1a] gi|312286983|gb|EFR14893.1| bacterial regulatory s, luxR family protein [Escherichia coli 2362-75] Length = 200 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|15894734|ref|NP_348083.1| two-component system regulatory protein [Clostridium acetobutylicum ATCC 824] gi|15024399|gb|AAK79423.1|AE007657_3 Two-component system regulator (CheY domain and HTH-like DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325508872|gb|ADZ20508.1| Two-component system regulator (CheY domain and HTH-like DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 225 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + ++ G G +++EIA+KL LS TV YL + KL+ +R Q A++ G I Sbjct: 162 EWNIIKCVGFGLSNKEIAKKLRLSEGTVRNYLSNILNKLNFRDRTQLAIWAVQTGVI 218 >gi|86147901|ref|ZP_01066206.1| Response regulator [Vibrio sp. MED222] gi|85834328|gb|EAQ52481.1| Response regulator [Vibrio sp. MED222] Length = 209 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 G++ +S+ L + + +G + + + LT ++ L Sbjct: 99 SHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + DG +++IA +L +S T+ A++ + KLD NR QA+ Sbjct: 159 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203 >gi|323528532|ref|YP_004230684.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385534|gb|ADX57624.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 210 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 13/156 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + S L R+ + + + + + + Sbjct: 53 LDMTMPGISGVDLIRRVRAERPSLPVLVLSIHNEAQVVSRALRAGATGYVTKDSNPDVLL 112 Query: 152 ACYQVITDFLELFKKR-------------SSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A + + + + + L++RE LQ+ G + EIA+ Sbjct: 113 AAIRKLAEGGRFIDPKLVEGIVFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIADAF 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS T++ + KL N I AIR G + Sbjct: 173 ALSAKTISTHKMRLMQKLGLANNADLIRYAIRHGLV 208 >gi|239928878|ref|ZP_04685831.1| chitinase two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437205|ref|ZP_06576595.1| response-regulator [Streptomyces ghanaensis ATCC 14672] gi|291340100|gb|EFE67056.1| response-regulator [Streptomyces ghanaensis ATCC 14672] Length = 213 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + +LT RE L G+G ++ IA++L ++ TV ++ Sbjct: 131 RLIAEFAAKPARRTEADPAVLESLTRREREVLSCLGEGLSNAGIADRLDMAEATVKTHVS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 KL +R+QA A G Sbjct: 191 RLLGKLGLRSRVQAAVLAQELGI 213 >gi|193782620|ref|NP_435754.2| Response regulator [Sinorhizobium meliloti 1021] gi|193073076|gb|AAK65166.2| Response regulator [Sinorhizobium meliloti 1021] Length = 204 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 G G + + + A + + L+L + R Sbjct: 80 TGRGDIGITVRAMKAGAHDFLEKPASSAAVLEAVERALQLCETRRKEHDRAQALHTLLAS 139 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ G +++IA +L S TV A+ KL + + ++ A R G Sbjct: 140 LTPRESQVSDQIVRGKRNKQIAFELNTSERTVKAHRHKVMEKLGVRSLAEVVSMAERLGL 199 Query: 234 I 234 + Sbjct: 200 L 200 >gi|124268678|ref|YP_001022682.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261453|gb|ABM96447.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 226 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 28/69 (40%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + L+ RE L G + EIAE+L LS +TV+ Y K N ++ Sbjct: 155 DDEAPLHERLSHREYQVFGLLAAGKSVGEIAEQLVLSSNTVSTYRARILEKTGVRNDVEL 214 Query: 225 IAKAIRFGY 233 A+R Sbjct: 215 ALYAVRQEL 223 >gi|302530377|ref|ZP_07282719.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439272|gb|EFL11088.1| two-component system response regulator [Streptomyces sp. AA4] Length = 217 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 37/78 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 D + +L+ERE + L G G ++ EI +L LS TV Y+ + K+ Sbjct: 138 HRDEQRAAQPARKLLASLSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVSAVLSKI 197 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR+QA A R G + Sbjct: 198 GAANRVQAALLAYRGGLL 215 >gi|256423166|ref|YP_003123819.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038074|gb|ACU61618.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 215 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE L +G + + IA L +S TV +++ KL + +A+A AI Sbjct: 154 NLTAREKEVLTCIVNGQSYKMIASDLNISYETVRSHVKKIYEKLHVASLTEAVALAINQR 213 Query: 233 YI 234 + Sbjct: 214 IV 215 >gi|167623632|ref|YP_001673926.1| two component LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167353654|gb|ABZ76267.1| two component transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 219 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 9/116 (7%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-------KRSSA 170 + + + +G++ +S LA +EA + +EL + + +S Sbjct: 94 LTISRAIHYGSSGFIPKSSSMETLA--EALEAVLFGDIWLPQGVELQEINEDETNQMASK 151 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 152 LADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207 >gi|149280407|ref|ZP_01886527.1| DNA-binding response regulator, LuxR family protein [Pedobacter sp. BAL39] gi|149228821|gb|EDM34220.1| DNA-binding response regulator, LuxR family protein [Pedobacter sp. BAL39] Length = 211 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L ++ LT RE L A G T+ ++AE L +S HTV ++ + K + Sbjct: 138 LKEEVLQNVPKLTRREKEILHEAARGLTTAQMAETLFISPHTVESHRKNLIEKFGVKSIA 197 Query: 223 QAIAKAIRFGYI 234 I A+ +G I Sbjct: 198 SVIKLALEYGII 209 >gi|90413366|ref|ZP_01221359.1| putative transcriptional regulator, LuxR family protein [Photobacterium profundum 3TCK] gi|90325608|gb|EAS42077.1| putative transcriptional regulator, LuxR family protein [Photobacterium profundum 3TCK] Length = 211 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 SLTPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|27364647|ref|NP_760175.1| LuxR family transcriptional regulator [Vibrio vulnificus CMCP6] gi|320155042|ref|YP_004187421.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] gi|27360792|gb|AAO09702.1| Transcriptional regulator, LuxR family [Vibrio vulnificus CMCP6] gi|319930354|gb|ADV85218.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] Length = 211 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 142 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 201 Query: 226 AKAIRF 231 + Sbjct: 202 ILLQQL 207 >gi|307326516|ref|ZP_07605711.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887924|gb|EFN18915.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 1086 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT RE L+L G ++ +IAE+L +S T + ++ + KL R Sbjct: 1004 AAEPADPAEELGLTPRERDVLRLVAAGRSNRQIAEELFISPKTASVHVSNILAKLGVSGR 1063 Query: 222 IQAIAKAIRFGYI 234 +A A A R + Sbjct: 1064 GEAAAVAHRLRLV 1076 >gi|283784837|ref|YP_003364702.1| CsgAB operon transcriptional regulator [Citrobacter rodentium ICC168] gi|282948291|emb|CBG87871.1| probable CsgAB operon transcriptional regulator [Citrobacter rodentium ICC168] Length = 216 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|284992816|ref|YP_003411370.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066061|gb|ADB76999.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 253 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A +L+ RE L G ++ +I +L LS T+ + KL A +R +A+A Sbjct: 185 REPAPVSLSMREMQVLTGMSQGKSNAQIGRELYLSEDTIKTHARRLFRKLGAKDRAEAVA 244 Query: 227 KAIRFGY 233 R G Sbjct: 245 TGFRRGM 251 >gi|226951745|ref|ZP_03822209.1| response regulator [Acinetobacter sp. ATCC 27244] gi|294648987|ref|ZP_06726435.1| response regulator [Acinetobacter haemolyticus ATCC 19194] gi|226837535|gb|EEH69918.1| response regulator [Acinetobacter sp. ATCC 27244] gi|292825122|gb|EFF83877.1| response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 227 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 154 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDV 213 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 214 KLTHLAIRYGLI 225 >gi|149914675|ref|ZP_01903205.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b] gi|149811468|gb|EDM71303.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b] Length = 224 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE L L DG T+ +I+ +LGLS +TV YL + KLD +R AIAK Sbjct: 162 TDTLSRREHEILALLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGAAIAK 218 >gi|153006507|ref|YP_001380832.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152030080|gb|ABS27848.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 541 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 157 ITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + ++ + A R LT RE L+L G T++ IA +L LS T++ ++ + K Sbjct: 463 LARLDAIRERSTPAGRSPLTPRELQVLRLVAAGRTNKAIAAELFLSERTIDRHISNIFRK 522 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L+ +R A A A + Sbjct: 523 LNVPSRAAATAHAYDRKLL 541 >gi|4322356|gb|AAD16025.1| regulatory protein CsgD [Escherichia coli] Length = 83 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 23 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 77 >gi|327313695|ref|YP_004329132.1| hemerythrin HHE cation binding domain-containing protein [Prevotella denticola F0289] gi|326944895|gb|AEA20780.1| hemerythrin HHE cation binding domain protein [Prevotella denticola F0289] Length = 318 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIA+ L +S +TV + + KL + AI Sbjct: 249 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 NLV 311 >gi|326329878|ref|ZP_08196194.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325952315|gb|EGD44339.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 221 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 +G V ++ L + +V + + LT Sbjct: 98 SGFLLKNADPDSLAEAVRAAADGHALLAPEVTM--RVIGRVTSHNAPTAPRPPKELDLLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G+G ++ EIA +L L+ TV ++ + KL +R+Q + R G + Sbjct: 156 AREREVLLLIGEGLSNNEIARRLYLTEATVKTHVSACLAKLQLRDRVQTVVFIHRHGLL 214 >gi|325859996|ref|ZP_08173123.1| hemerythrin HHE cation binding domain protein [Prevotella denticola CRIS 18C-A] gi|325482522|gb|EGC85528.1| hemerythrin HHE cation binding domain protein [Prevotella denticola CRIS 18C-A] Length = 336 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIA+ L +S +TV + + KL + AI Sbjct: 267 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 326 Query: 232 GYI 234 + Sbjct: 327 NLV 329 >gi|325269082|ref|ZP_08135703.1| transcriptional regulator [Prevotella multiformis DSM 16608] gi|324988703|gb|EGC20665.1| transcriptional regulator [Prevotella multiformis DSM 16608] Length = 318 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIA+ L +S +TV + + KL + AI Sbjct: 249 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 NLV 311 >gi|302345391|ref|YP_003813744.1| hemerythrin HHE cation binding domain protein [Prevotella melaninogenica ATCC 25845] gi|302149568|gb|ADK95830.1| hemerythrin HHE cation binding domain protein [Prevotella melaninogenica ATCC 25845] Length = 318 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIA+ L +S +TV + + KL + AI Sbjct: 249 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 NLV 311 >gi|295095310|emb|CBK84400.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 197 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE + G + +EIA +LGLS TV+ + + KL+ N ++ Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMSVKEIAVELGLSPKTVHVHRANLMEKLNVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|262374576|ref|ZP_06067850.1| nitrate/nitrite response regulator [Acinetobacter junii SH205] gi|262310572|gb|EEY91662.1| nitrate/nitrite response regulator [Acinetobacter junii SH205] Length = 219 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NLT RE +Q+ +G +++ IA KL ++ TV ++ K R++A Sbjct: 158 NLTSRELQVIQMISEGLSNKMIAHKLSITESTVKVHVKHILNKTGLRTRVEAAVW 212 >gi|227494727|ref|ZP_03925043.1| possible response regulator [Actinomyces coleocanis DSM 15436] gi|226831727|gb|EEH64110.1| possible response regulator [Actinomyces coleocanis DSM 15436] Length = 221 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 17/146 (11%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI---IEAHGACYQVIT 158 V + +A V VI ++ E + I GA + Sbjct: 76 VAARCRNMQTKFLALSVSDSAEDVVAVIRAGARGYVTKTISTEELVQSILRVGAGDAAFS 135 Query: 159 DFLELF----------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 L F + L+ RE ++L GYT +E A +L +S+ TV + Sbjct: 136 PRLAGFVLDAFGTAQVSETDEELDLLSAREQEVMRLIARGYTYKETAAELFISIKTVETH 195 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL NR + A + Sbjct: 196 VSAVLRKLQLSNRNELTHWATVRNLV 221 >gi|298490188|ref|YP_003720365.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298232106|gb|ADI63242.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 227 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 9/85 (10%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H Q+ L +LT RE L+L G ++ +I +L LS TV Y+ Sbjct: 151 HALSTQIHAPKL---------LSSLTTREQEVLELLTHGLSNADIGNQLHLSPRTVEKYV 201 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S K NR + + A++ G + Sbjct: 202 SSLLRKTLTSNRAELVRFAMKHGLV 226 >gi|188995237|ref|YP_001929489.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC 33277] gi|188594917|dbj|BAG33892.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC 33277] Length = 199 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + + + E ++ LE + + LT RE + G T++EIAE Sbjct: 96 DDTLSVHATVEELRQLLERLYQKTLEPEE-SGEEQQTLTNREKEIVVGVVKGMTNKEIAE 154 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS HTV + + KL + AI + Sbjct: 155 ELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKLV 192 >gi|302865580|ref|YP_003834217.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302568439|gb|ADL44641.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 220 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 32/84 (38%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ LT RE L G G ++ EI + L LS T Y+ Sbjct: 132 AVTRRVLAAAARSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQALFLSPDTARTYVS 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+A +R Q + A G + Sbjct: 192 RLLQKLNARDRAQLVVIAYESGLV 215 >gi|187933177|ref|YP_001885914.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B] gi|187721330|gb|ACD22551.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B] Length = 243 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE ++L G T++EI KL +S TV ++ + KL +R+ Sbjct: 171 FDEDLFFLENKLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRL 230 Query: 223 QAIAK 227 + + Sbjct: 231 EVVIF 235 >gi|152969100|ref|YP_001334209.1| LuxR transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953949|gb|ABR75979.1| putative bacterial regulatory protein, LuxR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 182 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 1/132 (0%) Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155 + + + +R + + ++E A Sbjct: 40 RLCDRNRHYYHEFMLPNNVRDMTEIFIRRERRIVAGISLMR-DVPFSSEERQRAQAVLPL 98 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V + ++ LT +E + + +G +++ IA +L +S+ TV +L + K Sbjct: 99 VELAIRDCLQEEDDLPAILTAKEREIVGMVREGASNKLIARQLDISLSTVKTHLRNIFAK 158 Query: 216 LDAVNRIQAIAK 227 + VNR + +++ Sbjct: 159 TEVVNRTELVSR 170 >gi|145593585|ref|YP_001157882.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145302922|gb|ABP53504.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 225 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R+L+ RE ++L G ++ +IA +L +S TV +L + KLD +R+ A+ + Sbjct: 149 TRSLSGREFEVIELVAAGLSNAQIAGRLSISEGTVKRHLTNTYDKLDVRSRVAAVNRLAA 208 Query: 231 FGYI 234 G I Sbjct: 209 MGLI 212 >gi|29899136|gb|AAP03103.1| putative 2-component system response regulator [Streptomyces griseochromogenes] Length = 222 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ + ++ A+ L+ERET ++ G T++E+A +L +S+ TV ++L Sbjct: 132 ITLRLLRNLAPAWRTTVPKPAQQLSERETQVIRAIARGRTNQEVAAELFISLSTVKSHLA 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL NR++ A A Sbjct: 192 TIQNKLQVRNRVEIAAWAWESRL 214 >gi|50954652|ref|YP_061940.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951134|gb|AAT88835.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 203 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ + ++A LT RE L G G T+ EI +L +++ TV ++L S + Sbjct: 122 RLLRHLSPRPEVTTAAGPQLTPRERETAALVGRGLTNAEICVELVIALGTVKSHLSSLQL 181 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL NR++ A A R G + Sbjct: 182 KLGVRNRVEIAAWAWRNGLL 201 >gi|24374266|ref|NP_718309.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24348793|gb|AAN55753.1|AE015711_10 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1] Length = 211 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 Y+ + L I+ H + + + LT RE LQ Sbjct: 102 GVFYLDAGLTEISLGLSNILRGHRVIPIQLVNGVNDDFGLYEDTEPLTIREREVLQALLS 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 G T+ +IA +L +S T+ +L K+ +R QAIA A Sbjct: 162 GSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|117920952|ref|YP_870144.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117613284|gb|ABK48738.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 211 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 Y+ + L I+ H + + + LT RE LQ Sbjct: 102 GVFYLDAGLTEISLGLSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLS 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 G T+ +IA +L +S T+ +L K+ +R QAIA A Sbjct: 162 GSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|320534244|ref|ZP_08034759.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133549|gb|EFW25982.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 232 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + L++RE + L G ++ EIA+ L L+ T+ ++L KL+ Sbjct: 153 SVRRADAVHTESIDALSDREKEIVTLVGRAMSNTEIAQHLVLAESTIKSHLNRILHKLEL 212 Query: 219 VNRIQAIAKAIRFGYI 234 +R Q I A G + Sbjct: 213 RDRAQLIVLAYESGLV 228 >gi|312138951|ref|YP_004006287.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311888290|emb|CBH47602.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 214 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 5/147 (3%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + S + +L + + + L ++ Sbjct: 56 LDVRLPDGSGIDVCRQLRADMPDLRCLMITAFPDERAVREAVAAGAKGYLVKDIRGMQLV 115 Query: 152 ACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + E+ + + LT +E L L G+G T+ +IA ++ L+ TV Sbjct: 116 QAVREVGAGHEIPFPVTPTRQPGAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVK 175 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 Y+ KL R QA A R G Sbjct: 176 NYVSRLLEKLGVERRAQAAVLAARSGL 202 >gi|298250271|ref|ZP_06974075.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548275|gb|EFH82142.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1070 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LTERE L+ G T+ +IAE+L +S TV A+L S K+ +R A A+ Sbjct: 1008 DDLTEREVEVLRSLATGLTNAQIAEQLVISPRTVQAHLSSIYNKIGVSSRSAATRYALEH 1067 Query: 232 GY 233 Sbjct: 1068 HL 1069 >gi|293412951|ref|ZP_06655619.1| conserved hypothetical protein [Escherichia coli B354] gi|291468598|gb|EFF11091.1| conserved hypothetical protein [Escherichia coli B354] Length = 200 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLRSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|282861134|ref|ZP_06270199.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563792|gb|EFB69329.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 215 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 11/112 (9%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR G + + LT RE Sbjct: 115 VRTVAGGEGMIAPAVTRR-----------LIAEFAGATAARDGAPDPAVLDALTRREREV 163 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G G ++ EIA +L ++ TV ++ KL+ +R+QA A G Sbjct: 164 LGCLGQGLSNAEIAGRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGL 215 >gi|215412247|ref|ZP_03421007.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|298525962|ref|ZP_07013371.1| predicted protein [Mycobacterium tuberculosis 94_M4241A] gi|298495756|gb|EFI31050.1| predicted protein [Mycobacterium tuberculosis 94_M4241A] Length = 183 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 95 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 154 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 155 YTKLGLSSRLQLAQQAARRG 174 >gi|254428002|ref|ZP_05041709.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] gi|196194171|gb|EDX89130.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] Length = 216 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + L S +LT ++ + + +G ++ IA +L +S TV A++ + Sbjct: 130 ARRAMPPTLPDHSAMSERITSLTPQQFRVMGMLMEGMQNKVIAYELDVSEATVKAHMTAI 189 Query: 213 TVKLDAVNRIQAI 225 KL NR QA+ Sbjct: 190 FRKLGVRNRTQAV 202 >gi|297158191|gb|ADI07903.1| two-component system DNA-binding response regulator [Streptomyces bingchenggensis BCW-1] Length = 243 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ A + E ++ L+ F + LT Sbjct: 125 IRGGARGYVTKTITGTDLVDAIFRVSEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 184 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 185 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 243 >gi|291446355|ref|ZP_06585745.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349302|gb|EFE76206.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT+RE L L G G ++ EIA +L LS TV ++ S KL VNR+Q Sbjct: 151 DSGAADRTGALTDREGQVLALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQ 210 Query: 224 AIAKAIRFGYI 234 A A R G I Sbjct: 211 AAVLADRAGLI 221 >gi|256390270|ref|YP_003111834.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356496|gb|ACU69993.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 205 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 2/109 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSC 181 + + I + E + K +LT+RE Sbjct: 96 GAAGSALIRRNAPDEASIDEREIALMELLAQYLSPRLREYFVRSKEVRDGSSLTDREAQV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++L G ++ IA +L + V TV ++ SA K A NR Q +R Sbjct: 156 VRLVAQGMSNRLIAAELHIRVDTVKKHVMSAMQKTGAGNRTQLALIHLR 204 >gi|227544258|ref|ZP_03974307.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300910231|ref|ZP_07127691.1| transcriptional regulator [Lactobacillus reuteri SD2112] gi|227185771|gb|EEI65842.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300892879|gb|EFK86239.1| transcriptional regulator [Lactobacillus reuteri SD2112] Length = 223 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GYT++EIA K+ +S TV A+ KL+ + + + A++ Sbjct: 160 ALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHQ 219 Query: 233 YI 234 + Sbjct: 220 LV 221 >gi|198275756|ref|ZP_03208287.1| hypothetical protein BACPLE_01931 [Bacteroides plebeius DSM 17135] gi|198271385|gb|EDY95655.1| hypothetical protein BACPLE_01931 [Bacteroides plebeius DSM 17135] Length = 262 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ L++RE L+L G S+EIA +L +SVHTV+ + KL + I+A A Sbjct: 199 AQILSDREKQILRLIDKGLMSKEIASQLSISVHTVSRHRQEILGKLQVKSSIEACRVAKE 258 Query: 231 FGYI 234 G + Sbjct: 259 LGIL 262 >gi|153007753|ref|YP_001368968.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559641|gb|ABS13139.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 214 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA Sbjct: 140 EALIARLRTLTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQA 199 Query: 225 IAKAIRFG 232 + R G Sbjct: 200 VILLSRIG 207 >gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 242 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 43/104 (41%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + F + + +++ + ++ + N T RE S LQL +G Sbjct: 138 LLTEAARFANADVGQMAKQITEIKSMLSHGDKHHSRKDDSIPNFTPREASVLQLVAEGLM 197 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA +L S+ V Y+ +K +R + + A+ + Sbjct: 198 NKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241 >gi|77745297|gb|ABB02549.1| response regulator [Lactobacillus reuteri] Length = 217 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GYT++EIA K+ +S TV A+ KL+ + + + A++ Sbjct: 154 ALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHQ 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|300088572|ref|YP_003759094.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528305|gb|ADJ26773.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 220 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 29/61 (47%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L L G + EIAE L + TV ++ KL +R +AI+ +R Sbjct: 156 AEPLTAREIEILTLIAAGKGNREIAETLFIEEKTVKNHINVIYSKLRIKSRYEAISYMLR 215 Query: 231 F 231 Sbjct: 216 Q 216 >gi|312114265|ref|YP_004011861.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311219394|gb|ADP70762.1| two component transcriptional regulator, LuxR family [Rhodomicrobium vannielii ATCC 17100] Length = 219 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 42/83 (50%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L+ + ++A +L+ERE L+ A G++++ IA L +SV +V Y Sbjct: 134 IAAHAVDRTLDSPSENATAGADLSEREVEVLRFASVGHSNKAIANILTISVRSVETYKAR 193 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 A KL NR+ + AI G++ Sbjct: 194 AMDKLGLDNRVGLVGYAIEKGWL 216 >gi|26990552|ref|NP_745977.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24985531|gb|AAN69441.1|AE016579_12 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 265 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 26/228 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 + + I ++ + + + P+ + D F Sbjct: 33 ALVRQLDRYIPVDSWVV--LIFSSGRPQVLAECPGKDGGPDPLFQDYLKGLYLL-DPFYL 89 Query: 79 HFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + W R + V+L + + SE Sbjct: 90 ANREAPQSGLFW-LADVAPECFEQTDYYQRYFRLNVVADEAHINVQLDTERTLSLSLGSE 148 Query: 138 --FLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR---------------NLTE 176 F ++ ++ + ++ +S A L+ Sbjct: 149 CLFNAEQTALLTLIQSWVAALMRQRMAFEREALEQNTSPAPSWQSWLDSTDQQLDTPLSA 208 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 RE +L G +++EIA KL +S TV + KL ++ + Sbjct: 209 RELEVGRLMLSGCSNKEIARKLAISAETVKVHRKHMYSKLGIKSQSEL 256 >gi|298247256|ref|ZP_06971061.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549915|gb|EFH83781.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1002 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S R L+ERE LQL G ++++IA+ L ++V T+ ++ KLD NRIQ + Sbjct: 934 DLPSRPRGLSEREYEILQLVARGMSNQDIADTLIVAVSTIKVHVRHLCQKLDVQNRIQMV 993 Query: 226 AKAIRFGYI 234 A+A G + Sbjct: 994 ARAREKGIV 1002 >gi|164511465|emb|CAN89666.1| putative LuxR family regulator [Streptomyces collinus] Length = 109 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 32/72 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +A L+ RE L G T IA ++GLS HTV+ Y+ K VNR Sbjct: 34 SAMSATDPSALTLSPREQEVLAHLAQGCTYRIIARRMGLSPHTVDTYVRRLRGKTGLVNR 93 Query: 222 IQAIAKAIRFGY 233 IQ A + GY Sbjct: 94 IQLAHLAFQLGY 105 >gi|307331390|ref|ZP_07610509.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882949|gb|EFN14016.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 37/91 (40%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 I A +VI L L + LT RE L+ A G S +IA KL LSV Sbjct: 112 SDAIRAVAQGERVIDPQLALAALDDGP-QPLTPRELEVLRFAAKGEESAQIAAKLFLSVG 170 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV YL SA KLDA NR+ AI A G++ Sbjct: 171 TVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201 >gi|297571832|ref|YP_003697606.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296932179|gb|ADH92987.1| two component transcriptional regulator, LuxR family [Arcanobacterium haemolyticum DSM 20595] Length = 222 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 19/151 (12%) Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-------------------MLA 142 +++ R+ + +A V + VI Sbjct: 71 AEVARRVLAAGVSTRFLALSVSDAANDVVAVIRAGARGYVTKAVNVDELVEAIKRVAGGD 130 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 G +R L+ERE ++L GYT E A +L +S+ Sbjct: 131 AAFSPRLAGFVLDAFGSQTTDIAERDEELDRLSEREQEVMRLIARGYTYRETATELFISI 190 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ + KL NR + A G Sbjct: 191 KTVETHVSAVLRKLQLSNRHELSRWAALRGI 221 >gi|295395258|ref|ZP_06805465.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294971893|gb|EFG47761.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L L G T++EI ++L L++ T+ ++G+ K A +R+Q + A+R Sbjct: 160 ADELTPRERDILALIARGRTNQEICDELWLTMPTIKTHIGNLRAKTQARDRVQLVLFALR 219 Query: 231 FGY 233 G Sbjct: 220 VGI 222 >gi|297198108|ref|ZP_06915505.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714199|gb|EDY58233.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ KL A +R QA+ A G Sbjct: 157 QLTEREAEVLRLMTRGLSNAEIAARLVVGTETVKSHVSGVLAKLGARDRTQAVIAAYESG 216 Query: 233 YI 234 ++ Sbjct: 217 FV 218 >gi|77463692|ref|YP_353196.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462525|ref|YP_001043639.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|77388110|gb|ABA79295.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] gi|126104189|gb|ABN76867.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17029] Length = 219 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 27/209 (12%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L ++ I F + P + L+ + ++ Sbjct: 22 LSDMKEAFLQIAQA----GF-YVALRLGFYSPEDE-----LNTFPEQFVELYTARGLALQ 71 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHKNGY 131 D + + + W ++ + + + G + R K + Sbjct: 72 DPLMRWTFTNHGALRWSAVDQPDPLGVIARY-----RQYGMRYGATICLAGRGPVPKKSF 126 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 IF ++ I++ + + ++LTE + L++ G Sbjct: 127 GIFARADREFSDAEIVDLRELLTTLHVN----------EPQSLTESQVEVLRMLSTGMRY 176 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +++A LG+S V A L A +++A Sbjct: 177 KQMAYALGISESAVKARLKGAAQRMNAKT 205 >gi|326796056|ref|YP_004313876.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326546820|gb|ADZ92040.1| two component transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 213 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L+ERE Q+ D S EIA++L +S TV+ Y KL+ + ++ A Sbjct: 145 SPLHALSERELQVAQMIVDCKKSNEIADQLNVSPKTVSTYRARIFSKLNIESDVELARLA 204 Query: 229 IRFGYI 234 +R+ + Sbjct: 205 MRYNIL 210 >gi|320201302|gb|EFW75883.1| Transcriptional regulatory protein UhpA [Escherichia coli EC4100B] Length = 85 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 20 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 79 Query: 227 K 227 + Sbjct: 80 R 80 >gi|311106078|ref|YP_003978931.1| response regulator 7 [Achromobacter xylosoxidans A8] gi|310760767|gb|ADP16216.1| response regulator 7 [Achromobacter xylosoxidans A8] Length = 215 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 8/137 (5%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQ 155 +L+ L A + + + L + I+A A Sbjct: 76 ELTALLHERYPQIAVLVLSMHDNPEYMVQAVKAGARGYLLKDEPAQEIVTAIDAVMAGRS 135 Query: 156 VITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + + + ++ A LT+RE L+ G +++IA+ LGLSV TV + + Sbjct: 136 YFSAAVAVRLSQATAPATMLTQRERDVLRHIASGEANKQIAQALGLSVRTVETHRLNIKR 195 Query: 215 KLDAVNRIQAIAKAIRF 231 KL + + I A+ Sbjct: 196 KLGIDGQAELIKYAVEN 212 >gi|302542220|ref|ZP_07294562.1| nitrate/nitrite response regulator protein NarL [Streptomyces hygroscopicus ATCC 53653] gi|302459838|gb|EFL22931.1| nitrate/nitrite response regulator protein NarL [Streptomyces himastatinicus ATCC 53653] Length = 258 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 6/118 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LT 175 VR G + ++ A + + + L + S AA LT Sbjct: 138 VRAGARGYLLKGAGRDEILRALHTVARGGAVFSPRMAERLGVLLGASGAASAKEAFPTLT 197 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G +IA++L ++ TV ++GS KL +R QAI +A G Sbjct: 198 AREREVLDLLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVHDRAQAIVRAREAGL 255 >gi|298483763|ref|ZP_07001936.1| transcriptional regulator [Bacteroides sp. D22] gi|295087553|emb|CBK69076.1| transcriptional regulator [Bacteroides xylanisolvens XB1A] gi|298270057|gb|EFI11645.1| transcriptional regulator [Bacteroides sp. D22] Length = 233 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 C V L +A+ LT+ E + L+ G T++EIA + LS HT+N Sbjct: 139 YICNHVSNLLLSGASSPLAASSVDDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTIN 198 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL N +A A+R G + Sbjct: 199 SHRKNIFRKLGVNNVHEATKYAMRAGIV 226 >gi|289168290|ref|YP_003446559.1| response regulator [Streptococcus mitis B6] gi|288907857|emb|CBJ22697.1| response regulator [Streptococcus mitis B6] Length = 198 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G T +++ +K+ +S TV+ +L + KL NR +AI A + Sbjct: 133 EMLTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIAEQL 192 Query: 232 GY 233 GY Sbjct: 193 GY 194 >gi|171910618|ref|ZP_02926088.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 213 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + A + + LT RE L G +EIA++LG+S TV Sbjct: 128 VPIARKVVSHFHNESRR-DVRDRPEFSGLTPREFEILTQLAKGLQYKEIADQLGISTSTV 186 Query: 206 NAYLGSATVKLDAVNRIQAIAK 227 +L KL R +A+ K Sbjct: 187 RGHLHVIYGKLHVQTRTEAVIK 208 >gi|118592081|ref|ZP_01549475.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118435377|gb|EAV42024.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 257 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 59/219 (26%), Gaps = 23/219 (10%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + ++A FA + N D + + D F Sbjct: 37 LLDLLEADYFASFVWTRTEGDTDA-----VFLNMDERNLAAY-QHHFQHCDPITPRFRMC 90 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EF 138 I + G+ F G + F Sbjct: 91 RRATHLDQIISREDFLR-TEFYNDFLARDGLHQGMNFHAYAATGHLGDLRIWRGAGKDTF 149 Query: 139 LMLANEVIIEAHGACYQVITDFL-----------ELFKKRSSAARNLTERETSCLQLAGD 187 +++ A Q + + L +A LT RE L L + Sbjct: 150 QQRDLDILNAIGTAFGQALANMRTNEQKQREADPRLRLAAWAARHQLTGREQDVLCLVSE 209 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G EIA L +SV TV ++L + K +R + +A Sbjct: 210 GKRDREIALDLNISVTTVRSHLKAVFQKSGVTSRAELLA 248 >gi|154509662|ref|ZP_02045304.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC 17982] gi|153799296|gb|EDN81716.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC 17982] Length = 216 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A L +S+ TV ++ S KL NR + A++ Sbjct: 154 DLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHVSSVLRKLQLSNRNELTRWAMQR 213 Query: 232 GYI 234 + Sbjct: 214 HIV 216 >gi|89056006|ref|YP_511457.1| two component LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88865555|gb|ABD56432.1| two component transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 214 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 8/149 (5%) Query: 94 EETVIESSGQLSVRLE--GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-H 150 + + +V A + +R G + + ++ Sbjct: 66 DAVRAAAQADWTVDALVISIFGDEARVIEAIRAGAKGYVLKGGDLSHIGEDIQSVLAGGS 125 Query: 151 GACYQVITDFLEL--FKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L + + + A A LT RET L+ GY EIA +LG+S TV Sbjct: 126 PISPSIARHLLAVLNDPRDAPAMQDAPALTNRETEILRSVSRGYKRHEIAAQLGISAGTV 185 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S KL+ + I+A+A A R G + Sbjct: 186 GNHITSIYRKLEVSSNIEAVAIASRSGML 214 >gi|34498054|ref|NP_902269.1| LuxR family two-component response regulator [Chromobacterium violaceum ATCC 12472] gi|34103909|gb|AAQ60269.1| probable two-component response regulator, LuxR family [Chromobacterium violaceum ATCC 12472] Length = 217 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G + +IAE L +++ TV + + KLDA N ++ AIR G Sbjct: 156 RLTMRENQVLKLIAEGMRNRDIAESLKITIKTVETHRLNLMRKLDAHNAVELTNWAIRLG 215 Query: 233 Y 233 Sbjct: 216 I 216 >gi|77462285|ref|YP_351789.1| LuxR family protein [Rhodobacter sphaeroides 2.4.1] gi|77386703|gb|ABA77888.1| Possible LuxR family protein [Rhodobacter sphaeroides 2.4.1] Length = 203 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 56/214 (26%), Gaps = 21/214 (9%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 + ++ A F + Q +Y D + D + Sbjct: 11 ISQLRRMATAGYFLGLHVRFTSPLITMQ-------SYREDWIEYYTEKGYVIYDPTIRWA 63 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 S W + E+ G+ F Sbjct: 64 LSETGHRRWSDLAEQDSRG-----VFAAAAQFDLRFGVTCS-WGTRESRSLGSFARSDRE 117 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + + + F L + LT+ + L+ G A KLG+ Sbjct: 118 FTDREV-------ELIFSLFQRLHELTQPPQE-LTQPQIEALRCIAGGDRHAAAAMKLGI 169 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S + A + SA +L A +AI +A + I Sbjct: 170 SESALKARIASARQRLGARTTAEAIQRAKEYRLI 203 >gi|293189077|ref|ZP_06607804.1| nitrate/nitrite response regulator protein NarL [Actinomyces odontolyticus F0309] gi|292821991|gb|EFF80923.1| nitrate/nitrite response regulator protein NarL [Actinomyces odontolyticus F0309] Length = 216 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A L +S+ TV ++ S KL NR + A++ Sbjct: 154 DLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHVSSVLRKLQLSNRNELTRWAMQR 213 Query: 232 GYI 234 + Sbjct: 214 HIV 216 >gi|221369141|ref|YP_002520237.1| Two-component response regulator [Rhodobacter sphaeroides KD131] gi|221162193|gb|ACM03164.1| Two-component response regulator [Rhodobacter sphaeroides KD131] Length = 220 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 152 ACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+T + ++ LT RE L+L +G +++E+A L L TV Y+ Sbjct: 136 LAAKVLTRLKSPRAQGAAAPIDQLTAREEDILRLVAEGCSNKEVALALDLQEKTVKHYMT 195 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 + KL NR +A A R Sbjct: 196 AILQKLQVRNRTEAALMAQRH 216 >gi|156744240|ref|YP_001434369.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii DSM 13941] gi|156235568|gb|ABU60351.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 1021 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE L+L G T +EIA L ++V TV +++ K++A NR QA A+A Sbjct: 956 ANEPLTAREIQVLRLLATGRTDQEIATSLVIAVSTVRSHIKRIYAKINARNRTQAAARAH 1015 Query: 230 RFGYI 234 G I Sbjct: 1016 DLGII 1020 >gi|50083538|ref|YP_045048.1| response regulator [Acinetobacter sp. ADP1] gi|49529514|emb|CAG67226.1| response regulator (Global antibiotic and cyanide control protein, LuxR/UhpA family) [Acinetobacter sp. ADP1] Length = 211 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLSIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|332296786|ref|YP_004438708.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] gi|332179889|gb|AEE15577.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] Length = 225 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 33/75 (44%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 T + + LT RE L GY++E+IAEKL L++ TV + + K Sbjct: 146 FTPASRPDPDDAPWLKELTNREREIATLLVTGYSNEQIAEKLHLAIQTVRNQVSAIYFKT 205 Query: 217 DAVNRIQAIAKAIRF 231 +R + I A R Sbjct: 206 GVKDRFEMIRLANRN 220 >gi|304406485|ref|ZP_07388141.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344543|gb|EFM10381.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 7/121 (5%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 +EG +GI T ++ ++ + Sbjct: 95 VEGLAGGASGILL------KDFTANKLTGALREAMRGELLLPASIAAKLAMRLRSVTSPT 148 Query: 168 SSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A LT RE L + EIAE L ++ TV Y+ K+ +R + IA Sbjct: 149 FAGADFALTPREIEIATLLIAYKNNREIAEALFITEGTVKNYISVIYEKVGMNDRAKVIA 208 Query: 227 K 227 + Sbjct: 209 R 209 >gi|262401983|ref|ZP_06078548.1| transcriptional regulator LuxR family [Vibrio sp. RC586] gi|262351955|gb|EEZ01086.1| transcriptional regulator LuxR family [Vibrio sp. RC586] Length = 209 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|114769185|ref|ZP_01446811.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] gi|114550102|gb|EAU52983.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] Length = 205 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + RE L+ G +++EIA L + TV ++ + KL NR QA A Sbjct: 146 SAREMQTLEQLCIGLSNKEIARNLDIQEVTVKLHVKNIFSKLGVSNRTQAALFAKER 202 >gi|331698102|ref|YP_004334341.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952791|gb|AEA26488.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 522 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 3/111 (2%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + + +A A + +R + LT RE L Sbjct: 405 HRPATDPDAAATGLRDDVRRGALDADAVEAVLSAAGHRVR---RRRAWPAGLTTREVEVL 461 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L G ++ +IA +L LS TV A++ K A NR A A+R G Sbjct: 462 RLLARGLSNRDIAGRLVLSPKTVGAHVEHIYAKTGANNRATAGLFAMRHGL 512 >gi|317499014|ref|ZP_07957295.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893664|gb|EFV15865.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 222 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +TE E ++L G G +++EI+ +L LS TV YL + KLD +R Q ++ Sbjct: 155 EEITEAEWEIIKLVGRGLSNKEISAELSLSEGTVRNYLSTILNKLDLRDRTQLAIWEVQS 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|311111869|ref|YP_003983091.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310943363|gb|ADP39657.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 210 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+++ + LA I A V+ L + + LTERET L+ Sbjct: 103 LAAGASGFMVKDTSASQLAEG--IRRVHAGMHVVDPALA-AESLAYGESPLTERETEILR 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +AG G T+ I E+L LS TV +L SA KL+A NR +AI A G++ Sbjct: 160 VAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGWL 210 >gi|284042019|ref|YP_003392359.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946240|gb|ADB48984.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +++ F+ R+ + LT RE L G ++ EIA L L TV ++G Sbjct: 132 RLLEQFVSAAPARAGDATLAELTPRERDVLLGIAAGRSNAEIAALLQLEESTVKGHVGRM 191 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA+ A G + Sbjct: 192 LAKLGLHSRVQAVIYAYETGLV 213 >gi|54310461|ref|YP_131481.1| LuxR family transcriptional regulator [Photobacterium profundum SS9] gi|46914904|emb|CAG21679.1| putative transcriptional regulator, LuxR family [Photobacterium profundum SS9] Length = 268 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT ++ L + DG +++IA +L +S T+ A++ + KL +R QA+ Sbjct: 206 SLTPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKSRTQAVIL 260 >gi|84684966|ref|ZP_01012866.1| autoinducer-binding transcriptional regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667301|gb|EAQ13771.1| autoinducer-binding transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 253 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 58/209 (27%), Gaps = 9/209 (4%) Query: 28 IKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86 A + + L N++ Sbjct: 4 FGFDRLIYGYTRFATPNSVGELIDALFLTNHNPTYFRQFIEERMFLHAPLTRWARENESG 63 Query: 87 -IIWQSIQEET-VIESSGQLSVRLEGGLLPFAGIAFPV---RLGFHKNGYVIFTSEFLML 141 W ++ + + + AG V H + Sbjct: 64 YCSWGALWTRPEDLTEKELEVIAFNRAMNVTAGYTVAVPTASDRSHALFALTGAHGLTQQ 123 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKL 198 + I +G V+ + + L L++R+ L+ +G +++++A + Sbjct: 124 DLDEIWAENGKEIDVLCNIVHLKIASLPIETNRPKLSKRQLEVLEWVSEGKSNQDVATIM 183 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SV T+ +L A KL QAIAK Sbjct: 184 DVSVPTIEKHLRLAREKLGVDTTAQAIAK 212 >gi|323189334|gb|EFZ74617.1| transcriptional regulator, LuxR family protein [Escherichia coli RN587/1] Length = 196 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ R+ L + G +++E Sbjct: 98 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 158 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191 >gi|325104954|ref|YP_004274608.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] gi|324973802|gb|ADY52786.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] Length = 235 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + L DG +S EIA+ L +S +TV + + KL + + A Sbjct: 168 PNFAKLTKREKEIISLLSDGKSSPEIADMLFISANTVITHRKNIVKKLGMKSFAHLVRFA 227 Query: 229 IRFGYI 234 I F + Sbjct: 228 IAFDLV 233 >gi|289662128|ref|ZP_06483709.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 923 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 40/83 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA L LS +T+ +L + Sbjct: 827 RALTIQAVLERLSGDDDPACDIFSERELEVLAQLARGYSNKQIARCLHLSENTIKFHLKN 886 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA +R A+A+A++ G + Sbjct: 887 LYRKLDARSRENALAQALQRGLL 909 >gi|254703683|ref|ZP_05165511.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 3 str. 686] gi|261754322|ref|ZP_05998031.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261744075|gb|EEY32001.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 213 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA Sbjct: 140 ESLIARLRILTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 199 Query: 225 IAKAIRFG 232 + R G Sbjct: 200 VILLSRIG 207 >gi|148977193|ref|ZP_01813820.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] gi|145963475|gb|EDK28738.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] Length = 209 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 G++ +S+ L + + +G + + + LT ++ L Sbjct: 99 SHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKIATLTPQQYKVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + DG +++IA +L +S T+ A++ + KLD NR QA+ Sbjct: 159 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203 >gi|194431335|ref|ZP_03063628.1| transcriptional regulatory protein UhpA [Shigella dysenteriae 1012] gi|194420790|gb|EDX36866.1| transcriptional regulatory protein UhpA [Shigella dysenteriae 1012] gi|320180011|gb|EFW54953.1| Transcriptional regulatory protein UhpA [Shigella boydii ATCC 9905] gi|332084474|gb|EGI89669.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 155-74] gi|332084858|gb|EGI90041.1| transcriptional regulatory protein uhpA [Shigella boydii 5216-82] Length = 196 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 14/122 (11%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL-ELFK 165 A I V G F S+ E+I H + D +L Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDIAIKLAS 132 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 133 GRQGP---LTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELA 189 Query: 226 AK 227 + Sbjct: 190 RR 191 >gi|326330415|ref|ZP_08196723.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951690|gb|EGD43722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 362 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 16/110 (14%) Query: 139 LMLANEVIIEAHGACYQVITDF------------LELFKKRSSAARN----LTERETSCL 182 L I A Q + D L R AAR LT RE Sbjct: 246 LDEQRRQISAALARAGQAVGDLCDAPLILASEATATLPPPRQPAARGAMSGLTAREQDVF 305 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L G T+ EIA++L +S TV +++ KL NR +AIAK +R G Sbjct: 306 ALLVSGATNPEIADRLTVSETTVKSHVKHILRKLRVSNRAEAIAKYVRGG 355 >gi|325697781|gb|EGD39665.1| two component system response regulator [Streptococcus sanguinis SK160] gi|332358540|gb|EGJ36364.1| two component system response regulator [Streptococcus sanguinis SK1056] Length = 227 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +++ E +Q G G +++EIA KL LS TV YL KL+ +R Q A++ Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|325860330|ref|ZP_08173452.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS 18C-A] gi|325482209|gb|EGC85220.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS 18C-A] Length = 214 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 34/84 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C L LT+ E L+ G T+ EIAEK S HTVN + Sbjct: 124 FLCQHAADLLLAPAASLDRDVVKLTKTEAEILKEIALGLTTREIAEKRFSSFHTVNTHRK 183 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N +A+ A+R G + Sbjct: 184 NIFRKLGVNNVHEAMRYAMRSGLV 207 >gi|307708433|ref|ZP_07644899.1| SalR [Streptococcus mitis NCTC 12261] gi|307615532|gb|EFN94739.1| SalR [Streptococcus mitis NCTC 12261] Length = 198 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G T +++ +K+ +S TV+ +L + KL NR +AI A + Sbjct: 133 EVLTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIAEQL 192 Query: 232 GY 233 GY Sbjct: 193 GY 194 >gi|298241134|ref|ZP_06964941.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554188|gb|EFH88052.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S A LTERE L G++++ I ++L L+ TV + KL A NR QA+ Sbjct: 144 RSGSIAEMLTERERMILTYMAQGFSNKMIGQELHLAERTVKFHTTILFQKLQASNRAQAV 203 Query: 226 AKAIRFGYI 234 AKA++ I Sbjct: 204 AKALQERLI 212 >gi|271968827|ref|YP_003343023.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512002|gb|ACZ90280.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 214 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L +G+++ S L + G V + + + +T RE Sbjct: 95 LRAGVSGFLLKVSPPEQLFAAIRTAVSGLATLDPAVTARVMAGYVGAPAIPGTVTPRERE 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G G T+ EI L ++ TV ++ KL +R +A+ A G + Sbjct: 155 VLTLIGRGLTNREITAALSVTESTVGTHINRLLAKLHLRDRAEAVRYAYEHGLV 208 >gi|229015004|ref|ZP_04172081.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] gi|228746271|gb|EEL96197.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] Length = 188 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E L L T+ EI+ L +S TV ++ S KL +R+ A+ K I+ Sbjct: 123 EALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVVKGIKK 182 Query: 232 GYI 234 G I Sbjct: 183 GLI 185 >gi|229021072|ref|ZP_04177731.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] gi|229024513|ref|ZP_04180960.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228736801|gb|EEL87349.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228740232|gb|EEL90571.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] Length = 188 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E L L T+ EI+ L +S TV ++ S KL +R+ A+ K I+ Sbjct: 123 EALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVVKGIKK 182 Query: 232 GYI 234 G I Sbjct: 183 GLI 185 >gi|300778185|ref|ZP_07088043.1| LuxR family two component transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503695|gb|EFK34835.1| LuxR family two component transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 209 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L A G T+ ++AEKL +S HTV ++ + K N AI AI + Sbjct: 145 PKLTRREKEILAEAAKGLTTNQMAEKLFISPHTVESHRKNLIEKFQTSNLSSAIRLAIEY 204 Query: 232 GYI 234 G I Sbjct: 205 GLI 207 >gi|157150357|ref|YP_001451161.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075151|gb|ABV09834.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 227 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +++ E +Q G G +++EIA KL LS TV YL KL+ +R Q A++ Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|125717095|ref|YP_001034228.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|262283716|ref|ZP_06061480.1| two-component response transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|323353591|ref|ZP_08088124.1| two component system response regulator [Streptococcus sanguinis VMC66] gi|125497012|gb|ABN43678.1| Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative [Streptococcus sanguinis SK36] gi|262260562|gb|EEY79264.1| two-component response transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|322121537|gb|EFX93300.1| two component system response regulator [Streptococcus sanguinis VMC66] gi|324990443|gb|EGC22381.1| two component system response regulator [Streptococcus sanguinis SK353] gi|324992278|gb|EGC24200.1| two component system response regulator [Streptococcus sanguinis SK405] gi|324994360|gb|EGC26274.1| two component system response regulator [Streptococcus sanguinis SK678] gi|325688533|gb|EGD30550.1| two component system response regulator [Streptococcus sanguinis SK72] gi|325689555|gb|EGD31560.1| two component system response regulator [Streptococcus sanguinis SK115] gi|325693874|gb|EGD35793.1| two component system response regulator [Streptococcus sanguinis SK150] gi|327459586|gb|EGF05932.1| two component system response regulator [Streptococcus sanguinis SK1] gi|327466995|gb|EGF12509.1| two component system response regulator [Streptococcus sanguinis SK330] gi|327473049|gb|EGF18476.1| two component system response regulator [Streptococcus sanguinis SK408] gi|327490831|gb|EGF22612.1| two component system response regulator [Streptococcus sanguinis SK1058] gi|328945374|gb|EGG39527.1| two component system response regulator [Streptococcus sanguinis SK1087] gi|332358394|gb|EGJ36219.1| two component system response regulator [Streptococcus sanguinis SK49] gi|332364228|gb|EGJ42003.1| two component system response regulator [Streptococcus sanguinis SK1059] gi|332364532|gb|EGJ42303.1| two component system response regulator [Streptococcus sanguinis SK355] Length = 227 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +++ E +Q G G +++EIA KL LS TV YL KL+ +R Q A++ Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|42523606|ref|NP_968986.1| two-component response regulator [Bdellovibrio bacteriovorus HD100] gi|39575812|emb|CAE79979.1| two-component response regulator [Bdellovibrio bacteriovorus HD100] Length = 204 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 151 GACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + FL + + + LT+RE ++ G +++EIAE LG S T+ Sbjct: 118 LLALKRGERFLSANIREAIDKAGVEVLTKREIEVARMIATGRSNKEIAEVLGCSDQTIKT 177 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 + + KL ++ + G Sbjct: 178 HKTNIMTKLGVNTSVEVAMWVTKQGL 203 >gi|307610791|emb|CBX00405.1| hypothetical protein LPW_21241 [Legionella pneumophila 130b] Length = 267 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE CL L G T ++I+E L LS TVN + S K+ VN +A++KA Sbjct: 202 PLAQLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAF 261 Query: 230 RFGYI 234 R G + Sbjct: 262 RLGLL 266 >gi|284991540|ref|YP_003410094.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064785|gb|ADB75723.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 215 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 12/146 (8%) Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY-VIFTSEFLML----ANEVIIEAHGA 152 G +R+ + G + L E I++A Sbjct: 58 PGRDGVTVIRVLRERGHRTPVLVLTSFGEPDLVVPALVAGADGYLLKYQDGESILDAVRC 117 Query: 153 CYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++T + + LT+RE L+L G ++ IA +L +S TV Sbjct: 118 IAAGGAPVDPMVTAAVLADLRDRGQGDLLTDREKEVLELVRQGLPNKVIARRLRISEATV 177 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 ++ ++ A +R QA A R Sbjct: 178 KTHVTRILQRIGATDRTQAALWAERR 203 >gi|54298259|ref|YP_124628.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] gi|53752044|emb|CAH13470.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] Length = 267 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE CL L G T ++I+E L LS TVN + S K+ VN +A++KA Sbjct: 202 PLAQLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAF 261 Query: 230 RFGYI 234 R G + Sbjct: 262 RLGLL 266 >gi|330468305|ref|YP_004406048.1| NarL family two-component response regulator [Verrucosispora maris AB-18-032] gi|328811276|gb|AEB45448.1| NarL family two-component response regulator [Verrucosispora maris AB-18-032] Length = 219 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 30/64 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE L G + IA +L LS TV +L + VK+ +R QAI +A Sbjct: 153 PFPQLTDREREILDHVAQGLDNATIAHRLALSPKTVRNHLSNILVKIGVGDRAQAIVRAR 212 Query: 230 RFGY 233 G Sbjct: 213 EQGL 216 >gi|313204085|ref|YP_004042742.1| transcriptional regulator, luxr family [Paludibacter propionicigenes WB4] gi|312443401|gb|ADQ79757.1| transcriptional regulator, LuxR family [Paludibacter propionicigenes WB4] Length = 220 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 40/82 (48%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q+I D K+ S LT E +QL G T++EIA+ LS HT+N + + Sbjct: 132 ALQIIMDGHNRKKESSGKRDLLTHTELELIQLFTQGKTAKEIADSRCLSHHTINTHRKNI 191 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL+ N + I A++ G + Sbjct: 192 FRKLEINNVQELIKFALKNGLV 213 >gi|312886495|ref|ZP_07746104.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311301123|gb|EFQ78183.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 263 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L +G +S++IA+KL +S +T+ + + K +A N + + A+R I Sbjct: 204 TKREKGVLVYIAEGLSSKQIADKLNISENTIVNHKQNMLRKTNAKNVTELVVMAVRNRVI 263 >gi|292491541|ref|YP_003526980.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291580136|gb|ADE14593.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 202 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 5/132 (3%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT---- 158 Q + G LP I + +F+ + Sbjct: 67 QELLPQRGIHLPVIMITGHADVPMAVQAMKSGAEDFIEKPFRAQALLDRIHKALSEGNHQ 126 Query: 159 -DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 F + ++ + +LT+RE +L +G ++ IA +L +S+ TV A+ KL Sbjct: 127 GQFQDPQREFLTQLESLTKRERQVFELLAEGKMNKHIAAELSISIRTVEAHRAKVMEKLK 186 Query: 218 AVNRIQAIAKAI 229 A + I AI Sbjct: 187 AKSLADLIRLAI 198 >gi|260769447|ref|ZP_05878380.1| two component transcriptional regulator LuxR family [Vibrio furnissii CIP 102972] gi|260614785|gb|EEX39971.1| two component transcriptional regulator LuxR family [Vibrio furnissii CIP 102972] Length = 159 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 2/115 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERET 179 + +G ++ A+ I+ H L + S + L++RE Sbjct: 45 LHMGASGFVSKSEDITNIIDASRAILSGHSYFPVASFHHQNAALSGQESEMLKLLSDREM 104 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G T++EIA+K+ LS T++ Y KL + + ++ I A R G + Sbjct: 105 MVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGVV 159 >gi|269926246|ref|YP_003322869.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789906|gb|ACZ42047.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 214 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 4/106 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ + + + I E + + K LT+RE LQ +G Sbjct: 111 QAIRCISAGGSIHSPQEIAELLLLAGRARIEDANARDKIG----QLTDREREILQAIAEG 166 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +EIA + ++V T + + + KLD +R+QA+ A+R G I Sbjct: 167 LSDKEIAARFNITVDTAHKHANNILRKLDTNSRLQAVLFALRHGAI 212 >gi|223934727|ref|ZP_03626647.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896682|gb|EEF63123.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 210 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L A NL+ RE L+L G+ +EI +KL + TV Y+ + K+ Sbjct: 137 HFHLIGSSPREAENLSPREQEVLELLALGFIYKEIGDKLNIGTETVRTYVKNICQKMHVR 196 Query: 220 NRIQAIAK 227 +R++A+AK Sbjct: 197 SRLEAVAK 204 >gi|15804064|ref|NP_290100.1| putative regulator [Escherichia coli O157:H7 EDL933] gi|15833654|ref|NP_312427.1| regulator [Escherichia coli O157:H7 str. Sakai] gi|168746942|ref|ZP_02771964.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|168753332|ref|ZP_02778339.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|168759603|ref|ZP_02784610.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|168765927|ref|ZP_02790934.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|168772526|ref|ZP_02797533.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|168779663|ref|ZP_02804670.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|168785385|ref|ZP_02810392.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC869] gi|168797350|ref|ZP_02822357.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|195935048|ref|ZP_03080430.1| putative regulator [Escherichia coli O157:H7 str. EC4024] gi|208808308|ref|ZP_03250645.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208814475|ref|ZP_03255804.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208820374|ref|ZP_03260694.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209396704|ref|YP_002272999.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|217326332|ref|ZP_03442416.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254795473|ref|YP_003080310.1| putative DNA-binding response regulator in two-component regulatory system [Escherichia coli O157:H7 str. TW14359] gi|261224835|ref|ZP_05939116.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli O157:H7 str. FRIK2000] gi|261254268|ref|ZP_05946801.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli O157:H7 str. FRIK966] gi|12518232|gb|AAG58661.1|AE005577_6 putative regulator [Escherichia coli O157:H7 str. EDL933] gi|13363874|dbj|BAB37823.1| putative regulator [Escherichia coli O157:H7 str. Sakai] gi|187771689|gb|EDU35533.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|188018429|gb|EDU56551.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|189002306|gb|EDU71292.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|189359150|gb|EDU77569.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|189364558|gb|EDU82977.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|189369942|gb|EDU88358.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|189374520|gb|EDU92936.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC869] gi|189379929|gb|EDU98345.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|208728109|gb|EDZ77710.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208735752|gb|EDZ84439.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208740497|gb|EDZ88179.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209158104|gb|ACI35537.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|209755520|gb|ACI76072.1| putative regulator [Escherichia coli] gi|209755522|gb|ACI76073.1| putative regulator [Escherichia coli] gi|209755526|gb|ACI76075.1| putative regulator [Escherichia coli] gi|217322553|gb|EEC30977.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254594873|gb|ACT74234.1| predicted DNA-binding response regulator in two-component regulatory system [Escherichia coli O157:H7 str. TW14359] gi|320191433|gb|EFW66083.1| Putative regulator [Escherichia coli O157:H7 str. EC1212] gi|326337482|gb|EGD61317.1| Putative regulator [Escherichia coli O157:H7 str. 1044] gi|326340008|gb|EGD63815.1| Putative regulator [Escherichia coli O157:H7 str. 1125] Length = 200 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%) Query: 140 MLANEVIIEAHGACYQVIT-DFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + V A + FL + + +L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGIMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|302327479|gb|ADL26680.1| transcriptional regulator, LuxR family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 450 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT R+ L L G T+ EI LG+S +TV +L + L+ NRI+A+ Sbjct: 8 QELTPRQKEILSLLRKGLTNAEICRTLGISANTVKVHLANIYKILEVTNRIEAV 61 >gi|294142434|ref|YP_003558412.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293328903|dbj|BAJ03634.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 221 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 7/93 (7%) Query: 143 NEVIIEAHGACYQVITDFLEL-------FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + ++ + + ++ + LT RE + ++L G ++EIA Sbjct: 118 ADELWYDRTLISKMFRQLVSRLDKTNDYSQDNAAMLQMLTNRERTIIKLVSSGARNKEIA 177 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L +S HTV A++ S K + NR++ + A Sbjct: 178 HQLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|260199910|ref|ZP_05767401.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T46] gi|289442302|ref|ZP_06432046.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis T46] gi|289415221|gb|EFD12461.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis T46] Length = 882 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIA 195 E A +KR + +LT E ++L + ++++IA Sbjct: 783 EDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSERLSNKDIA 842 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++L +S TV +L KL +R+Q + +A R G Sbjct: 843 KRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879 >gi|288803367|ref|ZP_06408800.1| transcriptional regulator, LuxR family domain protein [Prevotella melaninogenica D18] gi|288334187|gb|EFC72629.1| transcriptional regulator, LuxR family domain protein [Prevotella melaninogenica D18] Length = 313 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIA+ L +S +TV + + KL + AI Sbjct: 244 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 303 Query: 232 GYI 234 + Sbjct: 304 NLV 306 >gi|229521769|ref|ZP_04411187.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80] gi|229341363|gb|EEO06367.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80] Length = 209 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 142 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 201 Query: 226 AK 227 Sbjct: 202 IL 203 >gi|218263259|ref|ZP_03477435.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii DSM 18315] gi|218222833|gb|EEC95483.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii DSM 18315] Length = 192 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 8/132 (6%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 V LP + G G + T+ + A++ II + Sbjct: 60 FVLYADFFLPRRSKTMVLIDGAEDEGGLSATNHITIKASQEIIIEQ------MEQLFTGE 113 Query: 165 KKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 S+ + L+ RET LQL G T++EIA+KL +S++TV ++ + T KL Sbjct: 114 NNSISSENNKELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVS 173 Query: 223 QAIAKAIRFGYI 234 AI G I Sbjct: 174 GLTFYAIMNGII 185 >gi|163803797|ref|ZP_02197650.1| regulatory protein CsgD [Vibrio sp. AND4] gi|159172395|gb|EDP57268.1| regulatory protein CsgD [Vibrio sp. AND4] Length = 213 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 38/87 (43%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + G +I ++ S +LT RE L+L G ++++IA +L LS TV Sbjct: 122 LWLPRGYLEALINNYRHSNISMDSQHDSLTSRERQILELLAYGISNQQIASQLFLSESTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFG 232 +++ KLD R AI G Sbjct: 182 KSHIYKLYKKLDVHCRNDAIKVVRMNG 208 >gi|89902142|ref|YP_524613.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346879|gb|ABD71082.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 262 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG + P+ + + S+ ++ + I + S Sbjct: 141 MRAGAS-PISPMIARRVLSKYQSDRRENNR--VLAPVLSSSIAIKSEATEDGEAKSQRGL 197 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G++ EIA GLSVHTV ++ + KL ++ +A+ +A R G Sbjct: 198 LSPREQEVLALIARGFSYTEIARLQGLSVHTVQTHIKNLYGKLSVHSKSEAVFEATRMGL 257 Query: 234 I 234 + Sbjct: 258 L 258 >gi|24380308|ref|NP_722263.1| putative response regulator [Streptococcus mutans UA159] gi|290579719|ref|YP_003484111.1| putative response regulator [Streptococcus mutans NN2025] gi|24378323|gb|AAN59569.1|AE015020_4 putative response regulator [Streptococcus mutans UA159] gi|254996618|dbj|BAH87219.1| putative response regulator [Streptococcus mutans NN2025] Length = 226 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 N+++ E +Q G G +++EIA KL LS T+ YL + KL+ +R Q A++ Sbjct: 155 ENISKAEWKIIQQIGFGLSNKEIAAKLFLSEGTIRNYLSTILSKLNLRDRTQLAIWAVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|89092784|ref|ZP_01165736.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89082809|gb|EAR62029.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 223 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 4/119 (3%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARNLT 175 FP + + E + H ++ E ++ +LT Sbjct: 103 FPAHVVNAGAKGFLTKRCAPDELLEAVKAIHAGEEYITEEIRLRITEGGSADGASLASLT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L +G T +AE++ LS TV+A+ + KL N + + AIR + Sbjct: 163 KRELQIFSLLAEGRTVSIVAEEMFLSPKTVHAHRTNIFRKLKISNNSELVHLAIRHNIV 221 >gi|289642550|ref|ZP_06474693.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507638|gb|EFD28594.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 389 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 33/65 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L LT RE L L G T+ +IA++L +S TV +++ KL A NR Sbjct: 313 LAASAPRLPDGLTPREREVLALLASGATNAQIADRLTVSETTVKSHVKHILRKLHASNRA 372 Query: 223 QAIAK 227 +AIA+ Sbjct: 373 EAIAR 377 >gi|150004020|ref|YP_001298764.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254882923|ref|ZP_05255633.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294778059|ref|ZP_06743493.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|319639728|ref|ZP_07994460.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|149932444|gb|ABR39142.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254835716|gb|EET16025.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294448117|gb|EFG16683.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|317388644|gb|EFV69491.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 254 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELF 164 + L + PV L + ++ + L +V+I H I F E Sbjct: 127 EKHPHLIHHKLT-PVLLSGKGDIWLALCTVSLSPEKNIGDVVISDHTCTDHYIYSF-EGR 184 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R L++RE LQL+ G ++ EI E L + +TV + KL A N +A Sbjct: 185 RWRKQPELILSDREKEILQLSVKGLSNTEIGETLFIDANTVKFHKKKIFEKLHAENITEA 244 Query: 225 IAKAIRFGYI 234 + A I Sbjct: 245 VGIAANLRLI 254 >gi|119899725|ref|YP_934938.1| LuxR family DNA-binding response regulator [Azoarcus sp. BH72] gi|119672138|emb|CAL96052.1| probable DNA-binding response regulator, LuxR family [Azoarcus sp. BH72] Length = 208 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQL 184 +G+V S L V + G + + + LT +T L+L Sbjct: 98 GASGFVSKASSGDTLLQAVRVVLDGGVCTPEAATQSGRRSAAPVSERFGLTAAQTRVLEL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G T+ EIA+ LGLS TV ++ + L NR QA+ R G Sbjct: 158 LAQGKTNREIADLLGLSEGTVKVHMSAIFRALGVSNRAQALVVIARHG 205 >gi|59712981|ref|YP_205757.1| two-component response regulator [Vibrio fischeri ES114] gi|59481082|gb|AAW86869.1| two-component response regulator [Vibrio fischeri ES114] Length = 209 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ LT ++ L + DG +++IA L +S T+ A++ + KL NR Sbjct: 138 AACDDLATKIAALTPQQYKVLGMLSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNR 197 Query: 222 IQAIAK 227 QA+ Sbjct: 198 TQAVIL 203 >gi|323494771|ref|ZP_08099870.1| two component LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323310964|gb|EGA64129.1| two component LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 219 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT R+ L+ G +++IA L +S TV +++ S KL NR+QA+ Sbjct: 153 SLTRRQLMVLKCMTKGEANKQIAYNLNVSETTVKSHVSSILKKLGVTNRVQAV 205 >gi|319793602|ref|YP_004155242.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596065|gb|ADU37131.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 212 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEI 194 + +E ++EA + E + ++A L+ERE L G T++EI Sbjct: 111 EKPVDDEQLLEALQQAVRQHVRTRERSQADNAARERVAQLSEREREVLAFIVQGLTNKEI 170 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A L LS TV + + KLD + Q I + Sbjct: 171 ARTLALSPRTVETHRANLFAKLDCDSLAQLIRR 203 >gi|261493914|ref|ZP_05990423.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496858|ref|ZP_05993227.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307475|gb|EEY08809.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310417|gb|EEY11611.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 583 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L G ++EEIA +L +S TV+ ++ + K +R AI Sbjct: 84 GLSKREIELLTLISSGLSNEEIANELCISKRTVDKHIENIFAKTHTESRTLLAVFAITEH 143 Query: 233 YIC 235 +C Sbjct: 144 LVC 146 >gi|213855797|ref|ZP_03384037.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 153 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 8/139 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ ++ +++ L R++ F Y + P + I Y Sbjct: 14 LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N + W + Q G+ V L Sbjct: 71 YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125 Query: 125 GFHKNGYVIFTSEFLMLAN 143 G++ F+ L ++ Sbjct: 126 PNRALGFLSFSRSSLRCSS 144 >gi|254425145|ref|ZP_05038863.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192634|gb|EDX87598.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 223 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT E +Q G + +IA++L +S T+ +++ + K NR + A+ Sbjct: 167 ELTPTELKVVQFVARGMANRQIADELRVSQRTIESHVSNMLGKTGLHNRTELARWAV 223 >gi|15642696|ref|NP_232329.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586612|ref|ZP_01676397.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121726730|ref|ZP_01679955.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|153212581|ref|ZP_01948328.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|153803422|ref|ZP_01958008.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|153817412|ref|ZP_01970079.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153821283|ref|ZP_01973950.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|153825520|ref|ZP_01978187.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|153828368|ref|ZP_01981035.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|227082817|ref|YP_002811368.1| transcriptional regulator,LuxR family [Vibrio cholerae M66-2] gi|229509830|ref|ZP_04399311.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|229513623|ref|ZP_04403087.1| transcriptional regulator LuxR family [Vibrio cholerae TMA 21] gi|229516952|ref|ZP_04406398.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|229527372|ref|ZP_04416764.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] gi|229606755|ref|YP_002877403.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] gi|254225427|ref|ZP_04919038.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|254285892|ref|ZP_04960854.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|254851239|ref|ZP_05240589.1| transcriptional regulator [Vibrio cholerae MO10] gi|255744339|ref|ZP_05418291.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262158551|ref|ZP_06029666.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|262170055|ref|ZP_06037744.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] gi|298500482|ref|ZP_07010286.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9657298|gb|AAF95842.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549171|gb|EAX59204.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121630891|gb|EAX63273.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|124116452|gb|EAY35272.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|124121035|gb|EAY39778.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|125622061|gb|EAZ50384.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|126511998|gb|EAZ74592.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126521215|gb|EAZ78438.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|148876198|gb|EDL74333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|149740805|gb|EDM54896.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|150424074|gb|EDN16013.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|227010705|gb|ACP06917.1| transcriptional regulator,LuxR family [Vibrio cholerae M66-2] gi|229335004|gb|EEO00489.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] gi|229346015|gb|EEO10987.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|229349500|gb|EEO14456.1| transcriptional regulator LuxR family [Vibrio cholerae TMA 21] gi|229353304|gb|EEO18243.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|229369410|gb|ACQ59833.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] gi|254846944|gb|EET25358.1| transcriptional regulator [Vibrio cholerae MO10] gi|255737864|gb|EET93257.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262021463|gb|EEY40175.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] gi|262029712|gb|EEY48361.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|297540651|gb|EFH76708.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|327485173|gb|AEA79580.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 209 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|237722483|ref|ZP_04552964.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|229448293|gb|EEO54084.1| transcriptional regulator [Bacteroides sp. 2_2_4] Length = 216 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G ++ + + + ++ AH IT+ L + + LT E L+L Sbjct: 103 GMILKENSGEEIHSALMCTAHGERFLCHQITNLLIIGSDKPEIHSVLTVTEIDILKLIAH 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +EIA + S+HT+ + + KL N +A +R G I Sbjct: 163 GKSVKEIALERTSSIHTIITHKKNIFRKLGVNNVYEATKYTLRAGLI 209 >gi|110835379|ref|YP_694238.1| transcription regulator [Alcanivorax borkumensis SK2] gi|110648490|emb|CAL17966.1| transcription regulator, putative [Alcanivorax borkumensis SK2] Length = 203 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 I A ++ L + A LT ++ + L + +G+ ++EIA +L +SV+ Sbjct: 113 FAIREIMAGRSYFSESFRLMAGAAPEEALTLTRQQLAILTMLQEGHGNKEIARQLFVSVN 172 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ +L KLD NR I KA + G + Sbjct: 173 TIKTHLRLLYEKLDVPNRTACIEKARQIGLL 203 >gi|325000399|ref|ZP_08121511.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 219 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS------AARNLTER 177 L G+++ + + V A G L + LT R Sbjct: 95 LRAGATGFLLKRTPPRDIVRAVHTVAAGESLLFPAALRGLAAGFAPDGGDHLQDAGLTAR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L G ++ EIA +L L V TV ++ K + +R QA+ A G++ Sbjct: 155 EGEVLALMARGLSNAEIARELYLGVETVKTHVAGVLAKTGSRDRTQAVVAAYESGFV 211 >gi|315924040|ref|ZP_07920267.1| LuxR family DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622666|gb|EFV02620.1| LuxR family DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 198 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAAR 172 I P ++ F S + + + + + + S+ + Sbjct: 78 NDHIIVPANNQLYEFWTSPFVSRDENFDK---VILNYTLFIFRSSHVTSEDRLDYSNIKQ 134 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE L G T+ IAEK +S++TV ++ KL+ NR+ + Sbjct: 135 KLTDREWEIAVLISQGLTNTAIAEKTFISLNTVKTHIQHIYEKLNVPNRVSLMRL 189 >gi|293606796|ref|ZP_06689147.1| response regulator [Achromobacter piechaudii ATCC 43553] gi|292814800|gb|EFF73930.1| response regulator [Achromobacter piechaudii ATCC 43553] Length = 221 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L++RE S + G + +IA +L LS TV+ Y K++ N+ Sbjct: 141 RQEHSDVLPHLLLSDRELSVFRHLASGLNNSDIARRLFLSDKTVSTYKSRILTKMNLRNQ 200 Query: 222 IQAIAKAIRFGYI 234 + AIR I Sbjct: 201 TDLVRYAIRHHLI 213 >gi|218710848|ref|YP_002418469.1| LuxR family transcriptional regulator [Vibrio splendidus LGP32] gi|218323867|emb|CAV20228.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32] Length = 209 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 G++ +S+ L + + +G + + + LT ++ L Sbjct: 99 SHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + DG +++IA +L +S T+ A++ + KLD NR QA+ Sbjct: 159 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203 >gi|84393053|ref|ZP_00991819.1| Response regulator [Vibrio splendidus 12B01] gi|84376305|gb|EAP93187.1| Response regulator [Vibrio splendidus 12B01] Length = 209 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 G++ +S+ L + + +G + + + LT ++ L Sbjct: 99 SHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + DG +++IA +L +S T+ A++ + KLD NR QA+ Sbjct: 159 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203 >gi|308176449|ref|YP_003915855.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307743912|emb|CBT74884.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 432 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 161 LELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L L S AA +L RE LQL G + I++ LG+S +TV ++ + K+ Sbjct: 352 LPLDAPPSDAADIAEWSLGGREFEVLQLLAAGQRNRAISQALGISENTVKFHVRNLFKKM 411 Query: 217 DAVNRIQAIAKAIRFG 232 +R QA+A A G Sbjct: 412 GVGSRAQAVALAHSHG 427 >gi|241764572|ref|ZP_04762589.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241365975|gb|EER60596.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 237 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 52/189 (27%), Gaps = 10/189 (5%) Query: 44 FPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ 103 P + + L N+ + I + Q + + G Sbjct: 50 APALRPDVILLDNHLPGVTGVDAIRGLREVSPSSRVLMLTVSE-DAQDLATALRNGAQGY 108 Query: 104 LSV----RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 L L + A PV V + + Sbjct: 109 LLKTIDGDLLAQAIRRAAAGEPVVSPELMGKLVAAFQSQGAPEADAL-----EPGSAERS 163 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 A+ L+ RE L+ G +++EIA L ++ TV ++ KL Sbjct: 164 QPPAAFDVGDASTPLSPREEEVLREIVRGASNKEIARVLDIAETTVKIHVQHILRKLGLS 223 Query: 220 NRIQAIAKA 228 +R+QA A Sbjct: 224 SRVQAAVYA 232 >gi|213027871|ref|ZP_03342318.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 137 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 39 PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 98 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 99 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 132 >gi|139439378|ref|ZP_01772819.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC 25986] gi|133775157|gb|EBA38977.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC 25986] Length = 209 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +R +A +LT+RE +L G ++EIA + TV ++ S K+ NR Q Sbjct: 143 PRRPAAFASLTDREFEVAELIARGLDNKEIAATAYMGEGTVRNHISSILAKMGLRNRTQ- 201 Query: 225 IAKAIRFG 232 IA A G Sbjct: 202 IAIAYLRG 209 >gi|88860328|ref|ZP_01134966.1| two-component system regulatory protein [Pseudoalteromonas tunicata D2] gi|88817526|gb|EAR27343.1| two-component system regulatory protein [Pseudoalteromonas tunicata D2] Length = 204 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L ++S + +LT +E S L+ G ++ IA L S T+ ++ KL +R Sbjct: 133 LLNQQSPPSYHLTAKELSVLRCMSLGMANKAIALYLDNSEGTIRNHVSQIIAKLAVHDRT 192 Query: 223 QAIAKAIRFGYI 234 QA+ KAI+ + Sbjct: 193 QAVIKAIQNQLV 204 >gi|299133991|ref|ZP_07027184.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298590738|gb|EFI50940.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 216 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LTERE + +G +++E A +L +S T+ +L KL NR + Sbjct: 142 ETPGQPLSYLTEREREIMHEISEGISNKEAARRLNISEGTIKLHLHHIYHKLSIKNRAEL 201 Query: 225 IAKA 228 +A A Sbjct: 202 VAMA 205 >gi|296283884|ref|ZP_06861882.1| transcriptional regulator, AraC type [Citromicrobium bathyomarinum JL354] Length = 822 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 7/176 (3%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 ++ + + E G + H S + +++ E + + L L G+ Sbjct: 654 EEAIALLSDAREEAGRSGVVHSVSRMTQLLFALRHVSGDREGALREVAELAS-LGIATGM 712 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + + + + ++A L++RE Sbjct: 713 RQTCADMLGGYLADYVAQLSAQPDADEAQ------LHFLRSVMNRDRAARASASELSKRE 766 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L+ G + +E+A +LG+S H V +L KL +R+ A+ +A G+I Sbjct: 767 TDVLRALATGGSDKELARELGISDHGVRFHLKGVFKKLGVHDRLSAVVRAQEKGWI 822 >gi|291302034|ref|YP_003513312.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571254|gb|ADD44219.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 3/134 (2%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + V + + L Sbjct: 84 FDLDEYVFAALRAGASGFLVKDATPAELTGGIRVVAAGDAAVAPGVTRRLIERFAEHLPA 143 Query: 164 FKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ L TERE L G +++EIAE + +S TV ++G KL + Sbjct: 144 TERVPPGDDRLNSLTEREHDVLVQVARGRSNQEIAELIHVSQATVKVHVGRILAKLGLRD 203 Query: 221 RIQAIAKAIRFGYI 234 R Q I A G + Sbjct: 204 RAQVIVFAYENGVV 217 >gi|209696228|ref|YP_002264158.1| transcriptional regulator, LuxR response regulator receiver [Aliivibrio salmonicida LFI1238] gi|208010181|emb|CAQ80508.1| transcriptional regulator, LuxR response regulator receiver [Aliivibrio salmonicida LFI1238] Length = 209 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + ++ +LT ++ L + DG +++IA L +S T+ A++ + KL NR Sbjct: 138 QACDDLATRISSLTPQQYKVLGMLSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNR 197 Query: 222 IQAIAK 227 QA+ Sbjct: 198 TQAVIF 203 >gi|149911017|ref|ZP_01899646.1| regulatory protein CsgD [Moritella sp. PE36] gi|149805920|gb|EDM65906.1| regulatory protein CsgD [Moritella sp. PE36] Length = 230 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + R LT RE L+ G ++ EIA+ L +S HT+ ++L + Sbjct: 154 ISIYRSTKAVDLDRKP---ELTTREQEILRQLMTGSSNLEIADALYVSEHTIKSHLYNVF 210 Query: 214 VKLDAVNRIQAIAKAIR 230 K+ NR+QA++ A Sbjct: 211 KKIKVKNRLQAVSWAKE 227 >gi|148272754|ref|YP_001222315.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830684|emb|CAN01624.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 228 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 14/108 (12%) Query: 140 MLANEVIIEAHG--------ACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185 E ++ A LE F A +LT RE LA Sbjct: 114 DADPEFLLAAIRTVHAGNSVIAASATRQLLEHFDPGSRPRVAPPAFMSLTSREREIFVLA 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++ EIA+ LS TV ++ KL +R+Q + A Sbjct: 174 ARGLSNAEIAQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAFEHRL 221 >gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 245 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + ++ L + + T RE S LQL +G ++EI Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEAL-PSKDPVVHSFTPREASVLQLVAEGLMNKEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ K +R + + A+ + Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244 >gi|56696372|ref|YP_166729.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678109|gb|AAV94775.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 238 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 19/224 (8%) Query: 15 QELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 E+ R+ + + +KA FA Y +S +Q + C N D+ + Sbjct: 11 SEVRRRVGQKLLDLLKADYFASYVWDS----DAQQFVSCVQINMTDDNLRRY-ESYFQFH 65 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + + G+ + G + Sbjct: 66 DPITPTLQRRKKATPVSEVMRHDRL-VKTEFFNDFLKQDGLCYGMNYFAYDRGDNIGDLR 124 Query: 134 FTS------------EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +F+ ++ A L + + T RE Sbjct: 125 IWRGAHREDFTPRDAQFVDAVGPSLVNALIRARSAKEQVPSLRFAQIADDLGFTSREAEV 184 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L G T EEI KLG S T+ +++ S K R Q Sbjct: 185 SDLLVTGLTDEEICTKLGFSKPTLRSHIASIFRKSGLNRRSQLA 228 >gi|29345930|ref|NP_809433.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568671|ref|ZP_04846082.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|29337824|gb|AAO75627.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251842744|gb|EES70824.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 203 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 148 EAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + ++ L ++ L++RE + G T++EIAE L LS+HTV Sbjct: 108 DLDILSKKIHGLLNLASEEEELDNQETLSQREKEIVVCVVKGMTNKEIAENLFLSIHTVI 167 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + + KL + AI + Sbjct: 168 THRRNISKKLQIHSAAGLTIYAIVNKLV 195 >gi|298252261|ref|ZP_06976064.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546853|gb|EFH80721.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1056 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 14/123 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA----------HGACYQVITDFLELFKKRSSAA---- 171 G++ + ++ E + + SS Sbjct: 934 ARGEGFLRLFLDEGEEVETLLRELLPSLTEKPLRAWTQSILHAFAHPFSPQTSSPDSTLF 993 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ +E L L G ++ EIAE L +SV+TV ++ S KLD +RI+A A A R Sbjct: 994 EPLSTQEQRVLALLAAGRSNPEIAETLIISVNTVKGHVKSIYRKLDVNSRIEASAAASRL 1053 Query: 232 GYI 234 I Sbjct: 1054 KLI 1056 >gi|256376957|ref|YP_003100617.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921260|gb|ACU36771.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 492 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 1/113 (0%) Query: 123 RLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + ++ EV V+ L L+ RE Sbjct: 359 FDPAGVRALATRIAPVGGTISVEVDHRLGATATLVLPLRRALAAPEEVPDFGLSARELDV 418 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G + EIA ++ LS T+ +L KL R +A A A+ FG + Sbjct: 419 LSRVARGLRNREIAREIQLSPATIKFHLVRIFEKLGVGTRGEAAAVAVEFGLV 471 >gi|104781277|ref|YP_607775.1| response regulator [Pseudomonas entomophila L48] gi|95110264|emb|CAK14971.1| putative response regulator, LuxR family [Pseudomonas entomophila L48] Length = 130 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GYV+ + + HG I+ + S A LT R+ LQL Sbjct: 17 GLLGYVVKAANLEDFTQAMQHILHGQKTFPIS-----DDRAPSEAVRLTRRQQEILQLLH 71 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G S+E+A +LGLS+ TVN ++ L NR A+++A+ GY+ Sbjct: 72 RGLASKEVAAELGLSLGTVNNHVTGLMRVLGVTNRTHAVSRAMDLGYL 119 >gi|127514122|ref|YP_001095319.1| LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126639417|gb|ABO25060.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 220 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + + LT RE + +QL G ++EIA++L +S HTV A++ S K + NR Sbjct: 144 ELTQDMVAMLQKLTTRERTIIQLVSSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNR 203 Query: 222 IQAIAK 227 ++ + Sbjct: 204 VELLRW 209 >gi|302531276|ref|ZP_07283618.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440171|gb|EFL11987.1| two-component system response regulator [Streptomyces sp. AA4] Length = 229 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ + + LT RE ++ A G T+ EI +L LS+ TV +L S K+ A NR++ Sbjct: 159 REAPAPSEPLTARELDVVKAAARGLTNTEIGAELFLSLSTVKTHLASVQGKVGARNRVEI 218 Query: 225 IAKAIRFGYI 234 A A R G + Sbjct: 219 AAWAWRSGVV 228 >gi|293610045|ref|ZP_06692346.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|292827277|gb|EFF85641.1| two component transcriptional regulator [Acinetobacter sp. SH024] Length = 211 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|227495115|ref|ZP_03925431.1| response regulator [Actinomyces coleocanis DSM 15436] gi|226831567|gb|EEH63950.1| response regulator [Actinomyces coleocanis DSM 15436] Length = 202 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 32/70 (45%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S T+RE L D T E+A KL LS TV ++ + K +A NR +A Sbjct: 133 EALSLPNSPFTQREKEILTAFTDSATVAEVAAKLFLSPGTVRNHISNIISKTNAKNRAEA 192 Query: 225 IAKAIRFGYI 234 A G+I Sbjct: 193 ARIAKENGWI 202 >gi|206969319|ref|ZP_03230274.1| Two-component protein Kinase [Bacillus cereus AH1134] gi|206736360|gb|EDZ53518.1| Two-component protein Kinase [Bacillus cereus AH1134] Length = 595 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + +AA LT RE LQL G IA +L LS TV Sbjct: 508 QGMSHKIFEKFDEQKETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 568 YASTAYTKLGVCNKEEAVQKALEIGII 594 >gi|58425447|gb|AAW74484.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1005 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA +L LS +TV +L + Sbjct: 907 RALTIQALLERLSDDDDPAGDIFSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKN 966 Query: 212 ATVKLDAVNRIQAI--AKAIRFGYI 234 KLDA +R A+ A+A++ G + Sbjct: 967 LYRKLDARSRESALAQAQAVQRGLL 991 >gi|328880209|emb|CCA53448.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 200 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLA 185 G + A+ + A +++ F +L R +T RE L Sbjct: 88 DTGPDLLAQAVRSAADGEALIAPSVTVRLLQAFADLPAGRPVTQPVSPVTAREEQVLLAV 147 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G T+ EIA+ L +S+ TV +L S KL A NR++ A Sbjct: 148 ARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYE 192 >gi|320193968|gb|EFW68601.1| Putative regulator [Escherichia coli WV_060327] Length = 200 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEE 193 + V A + R+ ++L+ R+ L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTMPEKDIKDLKSLSARQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|238795676|ref|ZP_04639190.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] gi|238720402|gb|EEQ12204.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] Length = 209 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 13/160 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + ES L RL + F I + G + ++ Sbjct: 48 VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107 Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E++ L + LT RE QL G + + I Sbjct: 108 PD-ELVQALRTVSGGGLYLCSDALRALRHMPLQPPQLAVLTPREKEIFQLLIKGISVKSI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+L LS TV+ + + KL ++ + A++ + Sbjct: 167 AEQLLLSHKTVHVHRANILGKLQCETTVELVHFALQHQLL 206 >gi|126731865|ref|ZP_01747669.1| putative two-component response regulator [Sagittula stellata E-37] gi|126707692|gb|EBA06754.1| putative two-component response regulator [Sagittula stellata E-37] Length = 217 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 40/88 (45%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + + I + L + LT+RET L L G + E+A +LGL+ TV Sbjct: 120 LPALSPSIARRIMEHFSLTGPSAPPTHGLTDRETEVLALISRGLRNSEVARELGLAETTV 179 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +Y+ S KL +R +A A R G Sbjct: 180 ASYIKSIYGKLGISSRAEASWHATRLGL 207 >gi|56420621|ref|YP_147939.1| two component response regulator [Geobacillus kaustophilus HTA426] gi|261420284|ref|YP_003253966.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297529750|ref|YP_003671025.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319767094|ref|YP_004132595.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|56380463|dbj|BAD76371.1| two component response regulator [Geobacillus kaustophilus HTA426] gi|261376741|gb|ACX79484.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297253002|gb|ADI26448.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317111960|gb|ADU94452.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 209 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE ++L GYT+ +IA KL +S TV ++ + KL + + I A+ Sbjct: 142 PRSPLTNREREIVRLTFLGYTNNQIANKLKISPKTVESHKANIMQKLGIKEKHELIQYAL 201 Query: 230 RF 231 + Sbjct: 202 KN 203 >gi|22126469|ref|NP_669892.1| response regulator [Yersinia pestis KIM 10] gi|45441287|ref|NP_992826.1| GerR family transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51595939|ref|YP_070130.1| GerR family transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108806869|ref|YP_650785.1| GerR family transcriptional regulator [Yersinia pestis Antiqua] gi|108812565|ref|YP_648332.1| GerR-family transcriptional regulatory protein [Yersinia pestis Nepal516] gi|145598686|ref|YP_001162762.1| GerR-family transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149366494|ref|ZP_01888528.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|153949615|ref|YP_001401371.1| LuxR family transcrptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162418347|ref|YP_001606184.1| LuxR family DNA-binding response regulator [Yersinia pestis Angola] gi|165924363|ref|ZP_02220195.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165940157|ref|ZP_02228689.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166011786|ref|ZP_02232684.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166211236|ref|ZP_02237271.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167400261|ref|ZP_02305774.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421829|ref|ZP_02313582.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167469680|ref|ZP_02334384.1| DNA-binding response regulator, LuxR family protein [Yersinia pestis FV-1] gi|170024724|ref|YP_001721229.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186895033|ref|YP_001872145.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218928714|ref|YP_002346589.1| putative GerR family transcriptional regulator [Yersinia pestis CO92] gi|229841563|ref|ZP_04461722.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843674|ref|ZP_04463817.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229894221|ref|ZP_04509404.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|229902951|ref|ZP_04518068.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis Nepal516] gi|270486738|ref|ZP_06203812.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294503549|ref|YP_003567611.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis Z176003] gi|21959462|gb|AAM86143.1|AE013860_9 response regulator [Yersinia pestis KIM 10] gi|45436147|gb|AAS61703.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|51589221|emb|CAH20842.1| putative GerR-family transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108776213|gb|ABG18732.1| GerR-family transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108778782|gb|ABG12840.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115347325|emb|CAL20221.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis CO92] gi|145210382|gb|ABP39789.1| GerR-family transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149290868|gb|EDM40943.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|152961110|gb|ABS48571.1| DNA-binding response regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|162351162|gb|ABX85110.1| DNA-binding response regulator, LuxR family [Yersinia pestis Angola] gi|165911903|gb|EDR30548.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165923423|gb|EDR40555.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165989251|gb|EDR41552.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166207007|gb|EDR51487.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166960314|gb|EDR56335.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050210|gb|EDR61618.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|169751258|gb|ACA68776.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186698059|gb|ACC88688.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229680398|gb|EEO76497.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis Nepal516] gi|229689282|gb|EEO81345.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697929|gb|EEO87976.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703619|gb|EEO90635.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|262361591|gb|ACY58312.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis D106004] gi|270335242|gb|EFA46019.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294354008|gb|ADE64349.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis Z176003] gi|320015551|gb|ADV99122.1| putative GerR-family transcriptional regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 209 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 11/159 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + I ES L RL + F I + G + ++ Sbjct: 48 VHVAVIDISMPDESGLSLLKRLRQQIPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCD 107 Query: 141 LAN--EVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 A + + +G + L ++ S LT RE QL G + + +A Sbjct: 108 PAALVQALRTVNGGGLYLCTDALRALRQMPQQPSKLTILTPREKEIFQLLVKGISVKALA 167 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+L LS TV+ + + KL+ I+ + A++ + Sbjct: 168 EQLSLSHKTVHVHRANILSKLNCETTIELVHFALQHQLL 206 >gi|325298413|ref|YP_004258330.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] gi|324317966|gb|ADY35857.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] Length = 190 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 LA + +++A Q L + A +L+ RE L L G ++EIAE+L + Sbjct: 95 LAQDELLKAIVRLRQYGHHSL---PPLHATAHDLSPREIEVLVLLTKGCINKEIAERLNI 151 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+ TV ++ + T KL + A+ GY+ Sbjct: 152 SLTTVISHRKNITEKLGIKSVSALAIYAVMHGYV 185 >gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 222 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R S++ LTERE L+ G T+++IA+ L LS TVN +L VKL R Sbjct: 149 AAAYPRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETR 208 Query: 222 IQAIAKAI 229 A + A+ Sbjct: 209 TAATSVAL 216 >gi|259047361|ref|ZP_05737762.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035983|gb|EEW37238.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 202 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 31/54 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE L L +G+ ++EIAEK+ LS TV YL + KL+ +R Q Sbjct: 144 LSERENELLYLVAEGFNNKEIAEKMYLSEGTVRNYLSALLEKLELRDRTQLAVY 197 >gi|111220014|ref|YP_710808.1| putative protein-glutamate methylesterase [Frankia alni ACN14a] gi|111147546|emb|CAJ59199.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a] Length = 211 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G ++ EIA +L + V TV ++ KL A +R Q + A G Sbjct: 136 RLTEREREVLVQVAAGLSNSEIARRLFVGVTTVKTHVSRLLTKLGARDRAQLVVAAYESG 195 >gi|126433524|ref|YP_001069215.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] gi|126233324|gb|ABN96724.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] Length = 526 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L G T++EIA +L +S T ++ K+ NR+ A Sbjct: 454 GPGPRQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAAS 513 Query: 226 AKAIRFGYI 234 A+ G + Sbjct: 514 LYALEHGLL 522 >gi|67921004|ref|ZP_00514523.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67857121|gb|EAM52361.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 231 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L L G ++ EI ++L LS T+ Y+ S K D NR + + A Sbjct: 162 ELTRRESEVLDLLTMGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFAFDHH 221 Query: 233 Y 233 Sbjct: 222 L 222 >gi|94310830|ref|YP_584040.1| LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354682|gb|ABF08771.1| putative transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 266 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 69/237 (29%), Gaps = 12/237 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP----RRQQLICELHNYD 58 G+ +L L L + A + + + R +L+ LH Sbjct: 24 AEFSAGEADDALTHLLTTLCAMVTAQNALWAVVVRLPAVARKDPLFGWRPRLVRLLHPVP 83 Query: 59 L---DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES-SGQLSVRLEGGLLP 114 + + L D SG P + E E G R + Sbjct: 84 AMVASVQEQFDTLWSGNVDSSHVVAMSGDEPFRANLLFEAMPAEWFEGAHYRRHYLEVGH 143 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLE---LFKKRSSA 170 I L ++ + +E G + + L A Sbjct: 144 ADSIQVRCSLNDDVRIHLFVFRDLQAPRFSAPDLELLGFVMHGLRWYYRQQLLSHGLLIA 203 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT E L DG T ++IA+KL S +T + ++ S K + NR A Sbjct: 204 DASLTSAERRVLLGLLDGLTEKQIAQKLEQSPNTTHVHIKSIYAKFNVRNRSTLTAL 260 >gi|300790143|ref|YP_003770434.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799657|gb|ADJ50032.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 38/84 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q D + +L+ERE + L G G ++ EI +L LS TV Y+ Sbjct: 132 ARMVQSHRDEQRAAQPARKLLASLSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVS 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + K+ A NR+QA A R G + Sbjct: 192 AVLSKIGAANRVQAALLAYRGGLL 215 >gi|269955047|ref|YP_003324836.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269303728|gb|ACZ29278.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 230 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN--------- 173 +G+++ +S L + V A G + +E +R A Sbjct: 97 AGASGFMLKSSPRAHLLHAVRTAASGEALLDPSLTRRLVESHVRRPRAVEPGQTPAQLAG 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ G ++ EIA L L+ TV ++ + KL +R QA+ G Sbjct: 157 LSPRERDVLQALARGESNAEIAGTLFLAETTVKTHVAAVLRKLGLRDRTQAVILGYEIGL 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|187779968|ref|ZP_02996441.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC 15579] gi|187773593|gb|EDU37395.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC 15579] Length = 217 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL S NLT RE + ++ +G +++EIAE++ LS T+ + + KLD +R Sbjct: 144 ELNDDDISLKYNLTGREINIIREIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDR 203 Query: 222 IQAIAKAIRFGY 233 Q A + Sbjct: 204 TQIAIFAFKNNI 215 >gi|31790492|emb|CAD56670.1| putative regulatory protein [Citrobacter sp. Fec2] Length = 216 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA++ A Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|94313776|ref|YP_586985.1| putative two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357628|gb|ABF11716.1| putative two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 211 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L R+ LT R+ L G +++ IA LGLS +TV ++ + L V+R Sbjct: 135 RLPHTRAYKPSQLTPRQLEVLNQLNLGRSNKVIAYHLGLSENTVRVHVAAILDHLGVVSR 194 Query: 222 IQAIAKAIRFGYI 234 ++AI +A R G + Sbjct: 195 VEAILEAQRRGLV 207 >gi|319784454|ref|YP_004143930.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170342|gb|ADV13880.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 249 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 20/230 (8%) Query: 13 SLQELSPRLHLIQ-NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 + +ELS R + + I + + + Sbjct: 25 TPEELSARFTAAASELLGSDR----AYVGFYRRDITSLTIDDAG--PDRWNRDYDARLY- 77 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D F F S + G F I L GY Sbjct: 78 RQDPFFQRFASTRQDFLLPLSALRNGDFQRTPYYREFFGPSDSFDEITGVFNLDRLTAGY 137 Query: 132 VIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRS------SAARNLTERETS 180 V F A A ++ L L + R A L+ RET Sbjct: 138 VTFLRRNGAEPFGEQDLATACAASSATRLILERLLHLCRFRHKGAAIGDARSRLSRRETE 197 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + DG ++ I+ L +S TV ++ KL ++++ +A AIR Sbjct: 198 IARHLVDGGNAKTISRCLAISPGTVRNHIKQIYRKLGVHSQVELLA-AIR 246 >gi|229524681|ref|ZP_04414086.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis VL426] gi|229338262|gb|EEO03279.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis VL426] Length = 209 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|145226775|gb|ABP48141.1| putative two-component system response regulator [Rhodococcus sp. DK17] Length = 215 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A ++ LT+++ + L L G+G T+ +IAE++ L+ TV Y+ Sbjct: 128 RAAAALMAKLHSDAHAEDGPFAGLTDQQRTLLALLGEGLTNRQIAERMFLAEKTVKNYVS 187 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 KL R QA A + Sbjct: 188 RLLTKLGVERRTQAAVLATKM 208 >gi|332521658|ref|ZP_08398111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] gi|332042747|gb|EGI78947.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] Length = 208 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ RE L+L G ++EIA++L ++ TV+ Y KL+ N + + +A + Sbjct: 147 KKLSNREIEVLKLLTSGKRNKEIAQELDINEKTVSTYRARLMKKLNVTNLVDLVNQAKQL 206 Query: 232 GY 233 Sbjct: 207 AL 208 >gi|302874384|ref|YP_003843017.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307691015|ref|ZP_07633461.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302577241|gb|ADL51253.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 204 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++S LTERE L G ++EEIA+ L +S HTV ++ + K + NR Q Sbjct: 136 DQNSMINQLTEREKDVLTEIRKGLSNEEIAKVLYISEHTVKKHVSNILSKFNLSNRTQ 193 >gi|157144304|ref|YP_001451623.1| DNA-binding transcriptional activator UhpA [Citrobacter koseri ATCC BAA-895] gi|157081509|gb|ABV11187.1| hypothetical protein CKO_00008 [Citrobacter koseri ATCC BAA-895] Length = 223 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166 A I V G F S+ E+I H +L K Sbjct: 101 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 157 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 158 AAGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAR 217 Query: 227 K 227 + Sbjct: 218 R 218 >gi|160883312|ref|ZP_02064315.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483] gi|156111296|gb|EDO13041.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483] Length = 233 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E + L+ G T++EIA + LS HT+N++ + KL N +A A+R G Sbjct: 166 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|111023556|ref|YP_706528.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110823086|gb|ABG98370.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 288 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLA 185 + + + + G ++ +LT RE L Sbjct: 179 RDIHAELRSVAQTVTDTSLQARLRGLSQRLAGILRPDADSADEDPGVHLTPREIDVLSHV 238 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E A++L + TV +YL SA KLDA +R +A+ A R G + Sbjct: 239 ALGCTNSEAAQRLSVGPETVKSYLRSAMSKLDARSRHEAVVTARRLGLL 287 >gi|108805868|ref|YP_645805.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767111|gb|ABG05993.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 226 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPII---WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 + Y + + G P + +R+ Sbjct: 51 LLSRDVLGRRCY--EVVMGEREGGAPFCTYGCSVMHLAQAGRPVSSYDMRITTRSGQKRW 108 Query: 118 IAFP-VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 + + + + Y++ A++ + A G +R LT Sbjct: 109 VNVSNLSVDSEEGPYLVHLLRDSQGAHDALEMARGLIRLSSKKEAAGPGRRDIPT--LTP 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 R+ LQL G T EI+++L LS TV ++G+ LDA ++++A+A+A G + Sbjct: 167 RQLDVLQLISRGKTVREISQELYLSEATVRNHVGAVLRALDAHSQLEAVARARELGLL 224 >gi|37519917|ref|NP_923294.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210909|dbj|BAC88289.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 210 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V + ++ + + +ERE L L G G + EIA+ L L+ TV ++ Sbjct: 129 IAARVFSQLQNPPARKPESFQQFSERELEVLGLIGQGKNNREIAQALHLTEGTVKNHVTR 188 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 +L +R Q R Sbjct: 189 ILAQLGLRDRTQLALWTHRH 208 >gi|297581538|ref|ZP_06943461.1| transcriptional regulator [Vibrio cholerae RC385] gi|297534376|gb|EFH73214.1| transcriptional regulator [Vibrio cholerae RC385] Length = 209 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0205] Length = 243 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + ++ T RE S LQL +G ++EIA +L S+ V Y+ K +R + Sbjct: 173 QPTAAVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTEL 232 Query: 225 IAKAIRFGYI 234 + A+ G + Sbjct: 233 VRYALENGLV 242 >gi|310822190|ref|YP_003954548.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309395262|gb|ADO72721.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] Length = 236 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 7/140 (5%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 +L VR+ A +GY+ + I Sbjct: 90 RKRRLEVRMLMLSAVSAPDIISQCFDEGASGYLFRAGLGVGAVATAIHGLIRGERLFPVQ 149 Query: 160 FLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L + A LT+RE L G + +IA L ++ TV +++ Sbjct: 150 LLRNDFEHPPVATQPASVLNALTQREREVLGYVAGGADNLKIAAHLQIAERTVKSHVTQL 209 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL A NR Q +A G Sbjct: 210 YRKLGAENRTQLALRACHLG 229 >gi|291299597|ref|YP_003510875.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568817|gb|ADD41782.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 135 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L++RET L G ++ EI +L ++ TV + KL A +R A+A+A R Sbjct: 71 RGLSQRETQVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRT 130 Query: 232 GYI 234 G + Sbjct: 131 GIL 133 >gi|239627726|ref|ZP_04670757.1| two-component protein Kinase [Clostridiales bacterium 1_7_47_FAA] gi|239517872|gb|EEQ57738.1| two-component protein Kinase [Clostridiales bacterium 1_7_47FAA] Length = 209 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 V + A +LT RE ++L G + EIA L L+ TV + Sbjct: 129 VFEGMRRQMALPGAKADLDLTPREMDIMRLVAQGMDNREIAAGLFLAEGTVRNNISRLLE 188 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL +R Q A++ Sbjct: 189 KLKLKDRTQLAVFAVKNNL 207 >gi|115375050|ref|ZP_01462320.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|115367978|gb|EAU66943.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 7/140 (5%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 +L VR+ A +GY+ + I Sbjct: 83 RKRRLEVRMLMLSAVSAPDIISQCFDEGASGYLFRAGLGVGAVATAIHGLIRGERLFPVQ 142 Query: 160 FLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L + A LT+RE L G + +IA L ++ TV +++ Sbjct: 143 LLRNDFEHPPVATQPASVLNALTQREREVLGYVAGGADNLKIAAHLQIAERTVKSHVTQL 202 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL A NR Q +A G Sbjct: 203 YRKLGAENRTQLALRACHLG 222 >gi|87199633|ref|YP_496890.1| two component LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135314|gb|ABD26056.1| two component transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 218 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 12/130 (9%) Query: 116 AGIAFPV-----RLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELFKK 166 G+ FPV H + + + +++A +Q + + +K Sbjct: 73 HGLDFPVIVLSGHGDIHSAVRAMKAGAVDFVEKPFSRDKLLDAIANAFQRVENGEAAREK 132 Query: 167 RSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 SA LT RE L+ GY ++ IA LG+S TV Y + KL + Sbjct: 133 AVSAQTLVARLTSREQEVLEGLACGYPNKTIAYDLGISPRTVEVYRANIMTKLKVPSFAD 192 Query: 224 AIAKAIRFGY 233 A+ A G Sbjct: 193 ALRIAFTAGL 202 >gi|29833613|ref|NP_828247.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610737|dbj|BAC74782.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 220 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT+RE L+L G ++ EIA +L + TV +++ + KL A +R Q Sbjct: 147 AARAVMERAALTDREGEVLRLMARGLSNAEIAGQLVVGTETVKSHVSAVLAKLGARDRTQ 206 Query: 224 AIAKAIRFGYI 234 A+ A G++ Sbjct: 207 AVIAAYESGFV 217 >gi|258650664|ref|YP_003199820.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553889|gb|ACV76831.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 191 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LT RE ++L +G++S EIA+ L +S TV+ + + KL Sbjct: 115 LRRSRNGDRIPTSILTPREEEIVKLIAEGHSSREIADTLVISAKTVDRHRANIMQKLGMH 174 Query: 220 NRIQAIAKAIRFGYI 234 +R+ AIR G + Sbjct: 175 DRLDLTRFAIRVGLV 189 >gi|302552462|ref|ZP_07304804.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470080|gb|EFL33173.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 6/151 (3%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIA-FPVRLGFHKN---GYVIFTSEFLMLANEV 145 + + T I + AG + F V+ + G + ++A + Sbjct: 70 TAAGDRTRILIVTTFDLDEYAYAGLRAGASGFLVKDAQPEELLSGIRAVATGDAVVAPSL 129 Query: 146 IIEA--HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + E + +LT+RE L + G G+T+ EIA + L+ Sbjct: 130 TRRLLDAYVHHLPTDSAAETPPQEDPRLASLTDREREILTVIGRGWTNTEIATRFHLAES 189 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G K + +RIQA+ A + Sbjct: 190 TVKTHVGRILAKTGSRDRIQAVILAYDTKLV 220 >gi|254788088|ref|YP_003075517.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237687530|gb|ACR14794.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 303 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 ++ Q+ +R P G+ + V + ++I Sbjct: 178 LQKQLQVEIRTWLAHGPNIGMGVNLTTPNRSLRLVYLGNSAPNE----------ILIRLI 227 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + R LT RE+ L G T+ EI + LG S T+N +L KL+ Sbjct: 228 DNDKPDEASRLREHLPLTTRESEVLLWLARGKTNREIGQILGTSPRTINKHLEQIYKKLE 287 Query: 218 AVNRIQAIAKAIR 230 NR A AKA++ Sbjct: 288 VENRTTAAAKALQ 300 >gi|160914272|ref|ZP_02076493.1| hypothetical protein EUBDOL_00282 [Eubacterium dolichum DSM 3991] gi|158433899|gb|EDP12188.1| hypothetical protein EUBDOL_00282 [Eubacterium dolichum DSM 3991] Length = 64 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 T+RE+ +L Y+++EIA+++ +S TV ++ + +KL R QA+ Sbjct: 2 TQRESEVFKLLIANYSTKEIAQRMNISDKTVRNHISNVMLKLGVKGRAQAVV 53 >gi|108797883|ref|YP_638080.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866977|ref|YP_936929.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] gi|108768302|gb|ABG07024.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693066|gb|ABL90139.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] Length = 526 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L G T++EIA +L +S T ++ K+ NR+ A Sbjct: 454 GPGPRQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAAS 513 Query: 226 AKAIRFGYI 234 A+ G + Sbjct: 514 LYALEHGLL 522 >gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 303 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 29/56 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T+RE+ G T+ EIA+ + +S TVN +L KL NR A A AI+ Sbjct: 241 TKRESDVFLWLAKGKTNREIAQIIDISPRTVNKHLEQLFKKLAVDNRTTAAAMAIQ 296 >gi|29828005|ref|NP_822639.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29605107|dbj|BAC69174.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 221 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G G +++EI +L +S T ++ VKL A +R Q + A G Sbjct: 154 GLTEREREVMALVGFGLSNDEIGRRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|56696391|ref|YP_166748.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56678128|gb|AAV94794.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 234 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LT ++ LQL +G +++IA L ++ TV A++ + KL +R QA Sbjct: 155 EDALARLSALTNQQARILQLVCEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQA 214 Query: 225 IAKAIR 230 + A + Sbjct: 215 VLIAKK 220 >gi|120598493|ref|YP_963067.1| response regulator receiver protein [Shewanella sp. W3-18-1] gi|120558586|gb|ABM24513.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1] Length = 211 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 I+ H + + + LT RE LQ G T+ +IA +L +S T+ Sbjct: 120 ILRGHRVIPMQLINGVNDDFGLFEDTEPLTIREREVLQALLSGSTNLDIANQLFVSESTI 179 Query: 206 NAYLGSATVKLDAVNRIQAIAKA 228 +L K+ +R QAIA A Sbjct: 180 KTHLYRVFRKIGVSSRGQAIAWA 202 >gi|146293428|ref|YP_001183852.1| response regulator receiver protein [Shewanella putrefaciens CN-32] gi|145565118|gb|ABP76053.1| transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] gi|319426731|gb|ADV54805.1| transcriptional regulator, LuxR family [Shewanella putrefaciens 200] Length = 211 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 I+ H + + + LT RE LQ G T+ +IA +L +S T+ Sbjct: 120 ILRGHRVIPMQLINGVNDDFGLFEDTEPLTIREREVLQALLSGSTNLDIANQLFVSESTI 179 Query: 206 NAYLGSATVKLDAVNRIQAIAKA 228 +L K+ +R QAIA A Sbjct: 180 KTHLYRVFRKIGVSSRGQAIAWA 202 >gi|99077943|ref|YP_611202.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99034886|gb|ABF61940.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 266 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 77/234 (32%), Gaps = 12/234 (5%) Query: 11 SSSLQELSPRLHL-IQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +L ++ +++ + + + +I Sbjct: 14 APTLDAKYKVFSGFMEAEYGYVGVNYGLFLDTRSLHAIHNNHVSKRSGLPNEWREIYQRN 73 Query: 69 IETYGDDFLFHFNSGLLPI----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D + PI ++++ + E+ ++ + +G+ P++ Sbjct: 74 NYALDDYGMRMGALTRKPILQSSFYRALDANELPENFARVVGGVR--NFVSSGVVIPLQA 131 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSC 181 + +F +L ++ E Q + ++L + S L+E Sbjct: 132 NGMRGIIGLFDPSGDILKHDARFERDRTTIQTLANYLHMCSDWSDDIIVQMGLSEMNLKV 191 Query: 182 LQLAGDGYTSEEIAEKLGL-SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G +EI ++ + T+++++ L N ++ + +A + G + Sbjct: 192 LRLKAQGLRMKEILYEIQRDNPKTIHSHMQRVRRALGTRNDMETVQRAAKLGLL 245 >gi|307311784|ref|ZP_07591423.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306899525|gb|EFN30155.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 184 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 G G + + + A + + L+L + R Sbjct: 60 TGRGDIGITVRAMKAGAHDFLEKPASSAAVLEAVERALQLCETRRKDHDRAQALHTLIAS 119 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ L G ++++A +L S TV A+ KL + + ++ A R G Sbjct: 120 LTPRESQVFDLIVRGKRNKQVAFELNTSERTVKAHRHKVMEKLGVRSLAEVVSMAERLGL 179 Query: 234 I 234 + Sbjct: 180 L 180 >gi|256824283|ref|YP_003148243.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687676|gb|ACV05478.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 223 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 13/149 (8%) Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY 154 L L G + + + + + Sbjct: 74 PDGAALIQDLRGLGVATPMLVLTAHDDGDDVLQAVEAGASGYLLKDAPPTSLRDGVARAA 133 Query: 155 Q-------VITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 L + + AA +T+RE L+ G T+ ++A +LG+ TV Sbjct: 134 AGETVLAPAAAAHLVTGARATTAEAAPRVTDRELQVLRGVARGQTNRQVARELGIGEATV 193 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L L NR A+ +A G + Sbjct: 194 KTHLVHVFTTLGVTNRTAAVGRARELGLL 222 >gi|134099697|ref|YP_001105358.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008299|ref|ZP_06566272.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912320|emb|CAM02433.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 946 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 33/102 (32%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 +G + L + + R L+ RE Sbjct: 842 HAPGGPDGMGELADRYAELGATRDAARCRHLLRSHGTTTPSRRGRRGYGNELSPREQDVA 901 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L G T+ EIAE L LS TV ++ KL A +R + Sbjct: 902 RLLAGGRTNREIAEALFLSRRTVEQHVARVLRKLGAASRTEL 943 >gi|319791973|ref|YP_004153613.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594436|gb|ADU35502.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 214 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A LT R+ CL+ G G +++EIA L L TVN ++ SA L +R Sbjct: 132 DLGANPNAIRLTNRQCQCLEFVGAGRSTKEIARLLSLHPGTVNYHIDSAMEALGVKSRAH 191 Query: 224 AIAKAIRFGYI 234 A+ KA++ G + Sbjct: 192 AVQKALQLGLL 202 >gi|288800041|ref|ZP_06405500.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333289|gb|EFC71768.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 299 str. F0039] Length = 200 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G+ ++EIA L +S+ TV + + KL + A+ GY Sbjct: 135 LTDREIEVLSLLVQGHINKEIATILHISLTTVITHRKNIVEKLGMKSVSALTIYAVTHGY 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|289805193|ref|ZP_06535822.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 122 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 +R G + + ++E + A + + ++ + A LT +E Sbjct: 4 IFIRRGHRIIAGISLMR-DIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKER 62 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + +G +++ IA +L +S+ TV +L + K + +NR + +++ Sbjct: 63 EIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 110 >gi|333023628|ref|ZP_08451692.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332743480|gb|EGJ73921.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 290 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G + + + E G C ++ + R + A LT RE L + Sbjct: 184 RDTGAHLRGLADRLTDPALRAELLGVCARL--AAADAGPPRDTQAPPLTPREVEVLVIVA 241 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ +A +LGL TV AYL +A KL A R +A+A A R G + Sbjct: 242 EGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGVV 289 >gi|328885153|emb|CCA58392.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 218 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + LT RE + L G +++EIA+++ + TV A++ + +L NR+Q Sbjct: 145 AARARTRLEPLTGREREVVALLAAGLSNQEIADRMYVVEGTVKAHVSAVLARLGLRNRVQ 204 Query: 224 AIAKAIRFGYI 234 A G + Sbjct: 205 LAVLAYEAGLV 215 >gi|311894159|dbj|BAJ26567.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 233 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 32/64 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LTERE ++L G T+ EI L +S TV +L + KL NR+ A A Sbjct: 164 SAVEPLTEREWEIVELVAQGRTNAEIGAGLFISAGTVKTHLANVQGKLGTRNRVAIAAWA 223 Query: 229 IRFG 232 R G Sbjct: 224 WRTG 227 >gi|298244807|ref|ZP_06968613.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552288|gb|EFH86153.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1076 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 41/77 (53%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L ++ + A+ L+ RE L L G G +++EIA +L +++ TV ++ + L Sbjct: 1000 DQLALLRERMRAGAQILSPREREVLLLLGTGASNQEIANQLIITLGTVKRHVNTILAALQ 1059 Query: 218 AVNRIQAIAKAIRFGYI 234 NR+QA+A+A + Sbjct: 1060 VSNRMQAVARARELALL 1076 >gi|237665880|ref|ZP_04525868.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658827|gb|EEP56379.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 227 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L + E + G G +++EIA+ L LS TV YL KL+ +R Q A+ Sbjct: 155 KSLGKTEWKVIVQIGRGLSNKEIAKVLFLSEGTVRNYLSQILNKLELRDRTQLAIWAVEN 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|229818904|ref|YP_002880430.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564817|gb|ACQ78668.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 218 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSS-----AARNLT 175 L G+++ + +L + A V L F ++ LT Sbjct: 97 LRAGARGFLLKDAGPELLVRAIHAAAEGDALIAPNVTRRLLATFADQAPAVPVQPIDPLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 RE L L G T+ EIA +L + + TV ++ S KL A NR++ A Sbjct: 157 GREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNRVEIAMWAY 210 >gi|256374750|ref|YP_003098410.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919053|gb|ACU34564.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 38/84 (45%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + D + +L+ERE L L G G ++ EI L LS TV Y+ Sbjct: 131 ARVLSAVADGERAAEPARRLLSSLSEREREVLVLIGQGMSNAEIGGTLHLSEATVKGYVS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S K+ AVNR+QA A R G I Sbjct: 191 SVLGKIGAVNRVQAALVAYRGGLI 214 >gi|182415052|ref|YP_001820118.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842266|gb|ACB76518.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 274 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAE 196 N + + Q++ F++ + ++ +L++RE + L G+G + EIA Sbjct: 156 RRARNGQLFVSERVATQMLNRFVDGTEDGAADSPVSSLSDRELEIVNLIGEGLPTREIAA 215 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 KL LS+ TV + KL+ N Q + +R Sbjct: 216 KLFLSIKTVETHRVHIKRKLNLANATQLVQFCVR 249 >gi|167645498|ref|YP_001683161.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347928|gb|ABZ70663.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 137 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 33/65 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ LT +E L+ G +++EIA LGLS +TV ++ KL R QAI KA Sbjct: 72 ASLGLTGQEVKVLERLAAGQSNKEIAAALGLSPNTVKTHIAHLFEKLAVSRRTQAIGKAR 131 Query: 230 RFGYI 234 I Sbjct: 132 DLHLI 136 >gi|254361295|ref|ZP_04977438.1| possible bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica PHL213] gi|153092791|gb|EDN73834.1| possible bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica PHL213] Length = 583 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L G ++E+IA +L +S TV+ ++ + K +R AI Sbjct: 84 GLSKREIELLTLISSGLSNEDIANELCISKRTVDKHIENIFAKTHTKSRTLLAVFAITEH 143 Query: 233 YIC 235 IC Sbjct: 144 LIC 146 >gi|145300654|ref|YP_001143495.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853426|gb|ABO91747.1| transcriptional regulator, LuxR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 273 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 74/249 (29%), Gaps = 37/249 (14%) Query: 13 SLQELSPRLHLIQNRIKARNFAL---------YTINSALDFPRRQQLICELHNYD-LDSG 62 + L+ + + N + + FA + AL Q+ + N + Sbjct: 6 TADALTRSMTEVVNALHSSAFAGALVRLIQQQVAFDCALLLGVGQRPVYLYDNLSHQRAL 65 Query: 63 DIPNILIETY-GDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAF 120 L + D F+ GL +W Q ++ + G G+ Sbjct: 66 LFDRYLTSHFSQDPFMQALEQGLPAGVWTLAQVSQGRLDPEYRHHFYQATGWQEEVGLIL 125 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSA--- 170 PVR G ++ + L+ + + H C Q L + ++ Sbjct: 126 PVRDGLTLMLFLGRLDKRSTLSRDELARLEGVFPLVHSLCRQQWQQSQPLLAQSTAQPDS 185 Query: 171 ---------------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 LT RE +L G +E IA LG+ TV + K Sbjct: 186 TSLKSAVEQAMASVGGDRLTRRERQVAELLLQGLDTEAIAAALGIGNGTVKNHRKHLYGK 245 Query: 216 LDAVNRIQA 224 L +R + Sbjct: 246 LRLGSRAEL 254 >gi|326943150|gb|AEA19046.1| two-component response regulator YocG [Bacillus thuringiensis serovar chinensis CT-43] Length = 200 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198 Query: 233 Y 233 + Sbjct: 199 W 199 >gi|237880797|gb|ACR33055.1| response regulator [Actinoplanes garbadinensis] Length = 231 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L++RE S L+L G G T+ EI+ +L LS TV ++ KL NR+QA A Sbjct: 162 KQLSDREQSILRLLGAGLTNAEISRQLFLSAATVKEHVSVILSKLGVANRVQAAVLAYAS 221 Query: 232 GY 233 G Sbjct: 222 GL 223 >gi|256423541|ref|YP_003124194.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038449|gb|ACU61993.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 208 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE L+LA +G T +IAEKL +S +TV ++ + K + + AI A ++ Sbjct: 146 PKMTRREKEILKLAAEGLTIAQIAEKLFISPYTVESHRKNLMDKFEVNSVAAAIKLAGQY 205 Query: 232 GYI 234 G++ Sbjct: 206 GFL 208 >gi|218513661|ref|ZP_03510501.1| two-component response regulator protein [Rhizobium etli 8C-3] Length = 115 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 2/92 (2%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 H V + ++ + LT RE L L G ++ EIAE LG+S Sbjct: 12 DRNRRGWRHLFLSGVFDALMR--ERAEEGSDPLTPREHDTLGLIVAGRSNREIAEVLGIS 69 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T + + KL I A+ G Sbjct: 70 AATAETHRKNLKKKLGIATTAGLIRYALDHGI 101 >gi|220935078|ref|YP_002513977.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996388|gb|ACL72990.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 220 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K +++ L+ RE L + G T + IA L +S TV+ Y KL N + Sbjct: 141 LAKGQANPFDELSGRERQILLMILQGQTPQAIATALNISPKTVSTYKCRVMGKLGISNDM 200 Query: 223 QAIAKAIRFGYI 234 Q + A + G I Sbjct: 201 QLVTLAAQHGLI 212 >gi|209528286|ref|ZP_03276747.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209491272|gb|EDZ91666.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 203 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 12/138 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----LMLANEVIIEAHGACYQVITDF 160 +R + I + + T E ++ + + Sbjct: 62 LIRENAQFGWISVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQTERL 121 Query: 161 LELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K A++ LT E ++L G + EI++ + +S T+ +++ + Sbjct: 122 TRYRKSVIEASQKIRVREGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNM 181 Query: 213 TVKLDAVNRIQAIAKAIR 230 K NR Q A+ Sbjct: 182 LGKTGLHNRTQLARWALE 199 >gi|325673773|ref|ZP_08153464.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325555794|gb|EGD25465.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 211 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 5/147 (3%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + S + +L + + + L ++ Sbjct: 53 LDVRLPDGSGIDVCRQLRADMPDLRCLMITAFPDERAVREAVAAGAKGYLVKDIRGMQLV 112 Query: 152 ACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + E+ + + LT +E L L G+G T+ +IA ++ L+ TV Sbjct: 113 QAVREVGAGHEIPFPVTPTRQPGAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVK 172 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 Y+ KL R QA A R G Sbjct: 173 NYVSRLLEKLGVERRAQAAVLAARSGL 199 >gi|283782991|ref|YP_003373745.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] gi|298253351|ref|ZP_06977143.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] gi|283441595|gb|ADB14061.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] gi|297532746|gb|EFH71632.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] Length = 217 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ +E+ ++L GY+S+EIA++L + V TVN +L KL +R+QA+A Sbjct: 151 PKTSVLSPQESEIMRLCKQGYSSKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALA 208 >gi|320008841|gb|ADW03691.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 371 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE ++L G ++++IA +S TV ++ KL + +R +AIA+ Sbjct: 298 QLSSREAEVMELISSGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIAR 352 >gi|256790252|ref|ZP_05528683.1| LuxR family two-component response regulator [Streptomyces lividans TK24] gi|289774125|ref|ZP_06533503.1| LuxR family two-component system response regulator [Streptomyces lividans TK24] gi|289704324|gb|EFD71753.1| LuxR family two-component system response regulator [Streptomyces lividans TK24] Length = 233 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 4/106 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLA 185 G + ++ + + +++A +++ ++ + LT+RE L+L Sbjct: 119 QGSDLVSAVRTVARGQSLLDASAT-TKLMARLRGGGQQPAEEPEMLPGLTDREREILELI 177 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G+G T+ +I ++L L+ TV ++ KL RIQA A + Sbjct: 178 GEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 223 >gi|254785114|ref|YP_003072542.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237684126|gb|ACR11390.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 220 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 36/74 (48%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + LT+RE L+L DG T+ +I+E L +S HTV ++L Sbjct: 135 RLLHTFLDKNRKAPSNIKRPNVKLTKREKQILKLIKDGATNADISEALSVSEHTVKSHLY 194 Query: 211 SATVKLDAVNRIQA 224 + K+ NR++A Sbjct: 195 NVYKKIGVRNRLEA 208 >gi|255036722|ref|YP_003087343.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254949478|gb|ACT94178.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 219 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQL DG ++ EI +KL +SV TV + K + A+A A + Sbjct: 157 ALSSREKEVLQLICDGLSTTEIGDKLFISVRTVEGHRLRVLEKTGTKSTAAAVAFAYKNQ 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|86740955|ref|YP_481355.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567817|gb|ABD11626.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 224 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 15/158 (9%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----------- 136 + + + L + I Sbjct: 64 DVAVLDARLEDGNGIDVCRDLRSAHPEIGCLILTSYDDDDALFAAIMAGAAGYLLKQIRG 123 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 L+ A I +T + + A L ERE L L +G T+ Sbjct: 124 TDLVGAIRTIAAGRSLLDPAVTQRVLTRLREGPAEDRKLATLGERERQILVLIAEGLTNR 183 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +IA ++ LS TV Y+ + KL+ +R QA A R Sbjct: 184 QIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 221 >gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 242 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 44/100 (44%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + + ++TD L K+ S + T RE S LQL +G ++EI Sbjct: 142 AARFADIDVSKMAKQITEIKSMLTDQNPLNKENSIDIPSFTPREASVLQLVAEGLMNKEI 201 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ +K +R + + A+ + Sbjct: 202 ARQLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHLV 241 >gi|110633153|ref|YP_673361.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284137|gb|ABG62196.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 82 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ RE ++L G T++EIA+KL +S TV Y+ KL A NR++ + A G Sbjct: 6 NLSVREDQIVRLLLLGRTNKEIAQKLKISEKTVKHYMSLLMQKLQARNRVEVVLAAQELG 65 >gi|239942882|ref|ZP_04694819.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989342|ref|ZP_04710006.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 216 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT+RE L L G G ++ EIA +L LS TV ++ S KL VNR+Q Sbjct: 142 DSGAADRTGALTDREGQVLALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQ 201 Query: 224 AIAKAIRFGYI 234 A A R G I Sbjct: 202 AAVLADRAGLI 212 >gi|239831167|ref|ZP_04679496.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823434|gb|EEQ95002.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 231 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA Sbjct: 157 EALIARLRTLTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQA 216 Query: 225 IAKAIRFG 232 + R G Sbjct: 217 VILLSRIG 224 >gi|229085929|ref|ZP_04218153.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228697365|gb|EEL50126.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 189 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+ E LQL GY +EIA L S T++ ++ KLD + ++A+ K I+ Sbjct: 120 EELTDSEKQILQLLCGGYKRKEIATMLYASERTISNHIQHIFNKLDVSSALEAVTKGIQL 179 Query: 232 GYI 234 GYI Sbjct: 180 GYI 182 >gi|171915529|ref|ZP_02930999.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 234 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 9/133 (6%) Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT 158 + ++ L G G G + SE ++ I +I Sbjct: 103 DDPAKVFAALRAGA---HGYLLKGSKPEDIVGGIRSASEGGAPLSQEIARL------LIQ 153 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F E K LT RET L+ G +E+A +L LS TV YL KL Sbjct: 154 SFQEPPKTEKPPIPGLTPRETQILERLAQGMVPKEVAFELSLSYETVRDYLKGVYQKLHV 213 Query: 219 VNRIQAIAKAIRF 231 +R +A+ K ++ Sbjct: 214 RSRTEAVIKFLQH 226 >gi|167761739|ref|ZP_02433866.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC 43183] gi|167700375|gb|EDS16954.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC 43183] Length = 206 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE L L G ++EIA+KL +S+ TV + + KL + A+ Sbjct: 138 AHELSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 197 Query: 231 FGYI 234 GYI Sbjct: 198 HGYI 201 >gi|16119495|ref|NP_396201.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15162039|gb|AAK90642.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 210 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 2/140 (1%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 E E V + I+ V G +E ++ A + + Sbjct: 71 ELFKERQLSARVLMLSMHDSREYISTSVMYGAAGYILKDVATEEIVAAIDTVAAGGTYFS 130 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + D L + + + LT RE L L G ++ + A L ++ T+ + + Sbjct: 131 SGVRDVL--MESSTGRLKELTTREQDVLLLIARGKSNRDAALALDIAERTMETHRKNIKR 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD I AI G I Sbjct: 189 KLDIATTAGLIRYAIDHGLI 208 >gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. NATL2A] Length = 242 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 43/104 (41%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + F + + +++ + ++ + N T RE S LQL +G Sbjct: 138 LLTEAARFANADVGQMAKQITEIKSMLSHGDKNHSRKDDSIPNFTPREASVLQLVAEGLM 197 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA +L S+ V Y+ +K +R + + A+ + Sbjct: 198 NKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241 >gi|312196401|ref|YP_004016462.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227737|gb|ADP80592.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 251 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 6/107 (5%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 +A + A ++ + R+ LT RET L Sbjct: 145 DAPLETLAEAVRAVARGETVLAPPVAARLASRL------RAPDPVTLTRRETEVLAAVAR 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI +L + TV +L KL +R A+ A+ G + Sbjct: 199 GRTNAEIGRELFIGEATVKTHLLRVFAKLQVDDRTHAVTAALERGLL 245 >gi|297538580|ref|YP_003674349.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257927|gb|ADI29772.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 212 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 149 AHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H + +++ + L RS +LTERE L+ +G ++ IA LG+S TV Sbjct: 128 LHESLTEILKNALISPSLSRSEEEVSLTEREREILECLANGLNNKTIARSLGISDTTVKV 187 Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230 ++ KL +R++A A R Sbjct: 188 HIKHLLSKLKLTSRLEAAVWAHR 210 >gi|260459597|ref|ZP_05807851.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259034399|gb|EEW35656.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 222 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 7/107 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARNLTERETS 180 VRLG F + + E I+ AHG D ++ LT RE Sbjct: 109 VRLGAQGY---CFQFDDPHIIFETILAVAHGRICIPYIDINKVNDT---PLAQLTVRERE 162 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L + DG+T+ +IA + G+S +TV +L + KLD NR A+A Sbjct: 163 LLAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVAL 209 >gi|227549492|ref|ZP_03979541.1| possible transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078435|gb|EEI16398.1| possible transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 240 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L+ T+ EIA L + TV Y+ KL +R+ Sbjct: 165 APPVEPLTPRELEVLERVALAETNAEIAAHLHIGAATVKTYVSRLIAKLGVRDRVGLAVW 224 Query: 228 AIRFGYI 234 A G + Sbjct: 225 AHTSGIV 231 >gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 244 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + T RE S LQL +G ++EIA +L S+ V Y+ K +R + + A+ Sbjct: 181 HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFAKTGTASRTELVRYALEH 240 Query: 232 GYI 234 G + Sbjct: 241 GLV 243 >gi|78485726|ref|YP_391651.1| two component LuxR family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78364012|gb|ABB41977.1| two component transcriptional regulator, LuxR family [Thiomicrospira crunogena XCL-2] Length = 232 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S + L+ RE ++L +GY +++IA+ L +S TV+ + + KL + + Sbjct: 156 DKPSRPKKLSVREKQVIKLVAEGYKTKDIADMLEISDRTVSKHRENIMTKLGMTASAELV 215 Query: 226 AKAIRFGYI 234 A G + Sbjct: 216 NYASHIGLL 224 >gi|311696074|gb|ADP98947.1| two component transcriptional regulator, LuxR family [marine bacterium HP15] Length = 257 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT R+ L+ G ++++IA L ++ TV A++ + KL NR+QAI A Sbjct: 191 SLTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLGVHNRVQAILSA 246 >gi|296100407|ref|YP_003610553.1| DNA-binding transcriptional activator UhpA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054866|gb|ADF59604.1| DNA-binding transcriptional activator UhpA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 197 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|255534826|ref|YP_003095197.1| LuxR family transcriptional regulator protein [Flavobacteriaceae bacterium 3519-10] gi|255341022|gb|ACU07135.1| LuxR family transcriptional regulator protein [Flavobacteriaceae bacterium 3519-10] Length = 280 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L L GY+ EIA+ + +S HTV ++ + K+ N + I+KAI Sbjct: 219 KLTQRETEILSLIARGYSGSEIAKNICVSEHTVKSHRRNIIAKMRVRNTKELISKAIEMA 278 Query: 233 YI 234 I Sbjct: 279 VI 280 >gi|302559542|ref|ZP_07311884.1| erythropoiesis-stimulating protein [Streptomyces griseoflavus Tu4000] gi|302477160|gb|EFL40253.1| erythropoiesis-stimulating protein [Streptomyces griseoflavus Tu4000] Length = 333 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 13/225 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K S+ ++ R+ + + A + +Q + D L Sbjct: 120 KLRSMDQIQSRIEHLADTCTTEIAAFV-----PGGGQSEQHLEAARPLDRAVTGRGVRLR 174 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 + D + + E + + + P+ Sbjct: 175 YVFLDS----ARNCQGTRAYAEWLTERGGQVRTAPRLPSRMLVYDRVTAILPMDPAAADQ 230 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G ++ + A + + + + + + E + L L G+G Sbjct: 231 GALVLHGTGAVTALMTLFDQTWQQSCPLGETVPTRTGDDRP----SPPEQAVLGLLGEGM 286 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T + +A +LG+SV TV +L A +R +A A G++ Sbjct: 287 TDDAMARQLGVSVRTVRRITADLMTRLGARSRFEAGVLAHSKGWV 331 >gi|258620431|ref|ZP_05715469.1| Transcriptional regulator [Vibrio mimicus VM573] gi|258625644|ref|ZP_05720523.1| Transcriptional regulator [Vibrio mimicus VM603] gi|262170370|ref|ZP_06038048.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] gi|258581882|gb|EEW06752.1| Transcriptional regulator [Vibrio mimicus VM603] gi|258587310|gb|EEW12021.1| Transcriptional regulator [Vibrio mimicus VM573] gi|261891446|gb|EEY37432.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] Length = 209 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|258654190|ref|YP_003203346.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557415|gb|ACV80357.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 218 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE LA G ++ EIA + LS TV ++ KL +R+Q + A G Sbjct: 157 ELTQREREIFALAARGLSNAEIAAREFLSEATVKTHISRILGKLALRDRVQLVVFAYEHG 216 Query: 233 Y 233 Sbjct: 217 L 217 >gi|300773710|ref|ZP_07083579.1| possible transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759881|gb|EFK56708.1| possible transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 215 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +QL DG+ S+ I+EKL +S +TV + + KL+ N + + AI++ Sbjct: 154 RLTNREIQIIQLICDGHNSKVISEKLFISFNTVETHRKNIFQKLNIKNSLGLLRLAIQYD 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|239982955|ref|ZP_04705479.1| LuxR family two-component response regulator [Streptomyces albus J1074] gi|291454789|ref|ZP_06594179.1| luxR family two-component system response regulator [Streptomyces albus J1074] gi|291357738|gb|EFE84640.1| luxR family two-component system response regulator [Streptomyces albus J1074] Length = 237 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 41/110 (37%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + + S ML D ++ S L+ RE Sbjct: 123 INGADLVSAVRTVASGTSMLDPRTTARVMARLRGGPADSQPAEPEQPSVLDRLSPREREI 182 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L G+G T+ EIAE+L L+ TV + + KL RIQA A R Sbjct: 183 LELIGEGLTNREIAERLYLAEKTVKNRISAILSKLGVGRRIQAAMIAGRL 232 >gi|296138645|ref|YP_003645888.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026779|gb|ADG77549.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 223 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 3/123 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + + + + A Sbjct: 102 RAGARGYVTKTISGPELADAVRRVADGDAVFSPRL---AGFVLDSFTGRSPVPEPALDPE 158 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE L +SV TV + + K NR A Sbjct: 159 LDSLTPRELEVLRLLARGYTYREIAEDLFISVKTVETHASNVLRKTQQSNRNALTRWAHT 218 Query: 231 FGY 233 Sbjct: 219 RHL 221 >gi|192361059|ref|YP_001981583.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190687224|gb|ACE84902.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 198 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 140 MLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 ++ +I+A +VI L + L ++E L+LA +G T+ EI+ Sbjct: 103 DAPSDQLIDAIYKIMEGKRVIDGELAMM--ALGETDPLNDKERRALRLAAEGKTTAEISN 160 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV YL A KL+A NR+ A A + G+I Sbjct: 161 TLHLSEGTVRNYLSEAIAKLNAANRVDAARIARQKGWI 198 >gi|221134465|ref|ZP_03560770.1| two component LuxR family transcriptional regulator [Glaciecola sp. HTCC2999] Length = 214 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 10/123 (8%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL--ELFKKRSSAA 171 P+ + G F ++ E++ H ++ +L S+ Sbjct: 88 PIPAKVMQMGAFGFITKNAEPD-EMVRAVHKVVAGQKYIAPEIAQQIAIGKLDLGDSNPF 146 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G +IA+ L +S T+N Y KL+ + ++ A+R+ Sbjct: 147 DQLSDRELEITLMLVTGRRVPDIADSLNISPKTINTYRYRMFEKLEINSDVELTHLALRY 206 Query: 232 GYI 234 I Sbjct: 207 KLI 209 >gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 242 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 41/104 (39%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + F + + ++T ++ + T RE S LQL +G Sbjct: 138 LLAEAARFADTDVGQMAKQITEIKSMLTQNDSNSSRKDLVIPSFTPREASVLQLVAEGLM 197 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA +L S+ V Y+ +K +R + + A+ + Sbjct: 198 NKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241 >gi|332704010|ref|ZP_08424098.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332554159|gb|EGJ51203.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 210 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L + G T EIA+ L LSV T++ Y K+ N + AI+ Sbjct: 146 HEFLSDREYQVLCMIAQGKTVSEIADTLKLSVKTISTYRARILEKMKMKNNAELTYYAIQ 205 Query: 231 FGYI 234 G + Sbjct: 206 NGLV 209 >gi|328883488|emb|CCA56727.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L LT RE + L G +++EIA + +S T ++ A KL A +R Sbjct: 144 LPTDTGEVLEGLTGREREAVVLVAHGLSNDEIAAHMVVSPLTAKTHVNRAMTKLRARDRA 203 Query: 223 QAIAKAIRFGYI 234 Q + A G + Sbjct: 204 QLVILAYESGLV 215 >gi|315919533|ref|ZP_07915773.1| transcriptional regulator [Bacteroides sp. D2] gi|313693408|gb|EFS30243.1| transcriptional regulator [Bacteroides sp. D2] Length = 224 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G ++ + + + ++ AH IT+ L + + LT E L+L Sbjct: 111 GMILKENSGEEIHSALMCTAHGERFLCHQITNLLIIGSDKPEIHSVLTVTEIDILKLIAH 170 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +EIA + S+HT+ + + KL N +A +R G I Sbjct: 171 GKSVKEIALERTSSIHTIITHKKNIFRKLGVNNVYEATKYTLRAGLI 217 >gi|297154431|gb|ADI04143.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 213 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE+ L+L +G ++ EI +L +S T+ Y+ KL NR+QA G Sbjct: 151 ALTERESQVLRLVAEGMSNAEIGRELHMSEKTIKTYVSRVLAKLGCSNRVQAALLVRDAG 210 >gi|291436472|ref|ZP_06575862.1| LuxR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291339367|gb|EFE66323.1| LuxR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 178 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + L+ RE L+ ++EEIA L +SV+TV +L SA KL Sbjct: 105 ARHAHRPPPVVEELSGRERDVLRRLALMMSTEEIAADLYVSVNTVKTHLKSAYRKLSVSR 164 Query: 221 RIQAIAKAIRFGYI 234 R +A+ +A G + Sbjct: 165 RNEAVRRARELGLL 178 >gi|254819425|ref|ZP_05224426.1| two-component system response regulator [Mycobacterium intracellulare ATCC 13950] Length = 218 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKK-RSSAARNLT 175 L G+V+ S L V A +V+T + + R +A LT Sbjct: 97 LRAGAAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTSRVLTTYRKAAPGPRGAAIAELT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G G ++ EIA KL +S TV +++G KLD +R AI A G + Sbjct: 157 TRELDVLTLIGQGLSNTEIAGKLCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215 >gi|163732202|ref|ZP_02139648.1| DNA-binding response regulator, LuxR family, putative [Roseobacter litoralis Och 149] gi|161394500|gb|EDQ18823.1| DNA-binding response regulator, LuxR family, putative [Roseobacter litoralis Och 149] Length = 204 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +R L++RE L G +++EIA L L T+ ++ + KLDA NR QA A Sbjct: 141 SRKLSQRERQVLSGLCTGKSNKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARN 200 Query: 231 FGY 233 G+ Sbjct: 201 AGF 203 >gi|161505853|ref|YP_001572965.1| hypothetical protein SARI_04030 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867200|gb|ABX23823.1| hypothetical protein SARI_04030 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 229 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A + + ++ D+L + S + L+ R+ L++ G ++++ Sbjct: 131 PRDSDAETFALALNTVSRGMMFLPGDWLNSTELASRDIKALSARQREILKMLAAGESNKQ 190 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 191 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 224 >gi|163802337|ref|ZP_02196231.1| putative response regulator [Vibrio sp. AND4] gi|159173866|gb|EDP58680.1| putative response regulator [Vibrio sp. AND4] Length = 211 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 6/97 (6%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEE 193 ++ + + I + E + + A LT+RE +L G ++ + Sbjct: 113 AVSQGDVWFPRPILNKAIYHYQEGNEDPAITADYLSTKFLLTKREREICRLMLQGLSNTQ 172 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 IA + +S++T+ + + KL+ +R + +A A + Sbjct: 173 IARQSNVSINTIKTHASNVLHKLNVHSRYELMAMARK 209 >gi|111224125|ref|YP_714919.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111151657|emb|CAJ63376.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 270 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S LTERE L+L ++ EIA +L L+ TV ++ + KL +R+QA+ Sbjct: 197 RPRSGLAELTEREAVVLRLVALALSNAEIATELVLTEATVKTHVSAVLRKLGLRDRVQAV 256 Query: 226 AKAIRFGYI 234 A G + Sbjct: 257 VFAYDHGLV 265 >gi|329941697|ref|ZP_08290962.1| LuxR family two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329299414|gb|EGG43314.1| LuxR family two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 7/100 (7%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V L + + A Q ++ A LT+RE L L G+G T+ Sbjct: 129 VARGQSLLDPSATTRLMARLRGGQA-------KEEEPEALPGLTDREREILALIGEGLTN 181 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +I ++L L+ TV ++ KL RIQA A + Sbjct: 182 RQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 221 >gi|229185568|ref|ZP_04312748.1| Response regulator [Bacillus cereus BGSC 6E1] gi|228597963|gb|EEK55603.1| Response regulator [Bacillus cereus BGSC 6E1] Length = 566 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ +G + IA KL LS T+ Y + KL NR +AI A Sbjct: 505 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTEN 564 Query: 233 YI 234 + Sbjct: 565 IL 566 >gi|225865300|ref|YP_002750678.1| response regulator [Bacillus cereus 03BB102] gi|225788745|gb|ACO28962.1| response regulator [Bacillus cereus 03BB102] Length = 597 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ +G + IA KL LS T+ Y + KL NR +AI A Sbjct: 536 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTEN 595 Query: 233 YI 234 + Sbjct: 596 IL 597 >gi|289812420|ref|ZP_06543049.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 170 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 72 PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 131 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 132 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 165 >gi|194291957|ref|YP_002007864.1| response regulator protein [Cupriavidus taiwanensis LMG 19424] gi|193225861|emb|CAQ71807.1| Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) [Cupriavidus taiwanensis LMG 19424] Length = 223 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + FL + S+ R LT +E + L+L +G +++EIAE+LG SV TV + KL Sbjct: 132 LQAFLHTDEPPPSSRRALTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHRLHLRRKL 191 Query: 217 DAVNRIQAIAKAI 229 R + + A+ Sbjct: 192 RVGGRAELVKYAV 204 >gi|154252142|ref|YP_001412966.1| two component LuxR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156092|gb|ABS63309.1| two component transcriptional regulator, LuxR family [Parvibaculum lavamentivorans DS-1] Length = 215 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT R+ L G G +++EIA LG+S+ TV ++ + L NR +A A Sbjct: 145 AGHEKLTPRQREVLLELGKGRSNQEIAHVLGISIATVKLHVNAILQTLGVRNRTEAAIIA 204 Query: 229 IRF 231 +R Sbjct: 205 LRA 207 >gi|119468892|ref|ZP_01611917.1| DNA-binding response regulator, LuxR family protein [Alteromonadales bacterium TW-7] gi|119447544|gb|EAW28811.1| DNA-binding response regulator, LuxR family protein [Alteromonadales bacterium TW-7] Length = 219 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA L LS T+ +++ + +KL NR QA+ Sbjct: 150 LTNQQRKILFMLADGLLNKQIAYDLNLSESTIKSHVSTIFLKLGVKNRTQAVIL 203 >gi|148657072|ref|YP_001277277.1| regulatory protein LuxR [Roseiflexus sp. RS-1] gi|148569182|gb|ABQ91327.1| regulatory protein, LuxR [Roseiflexus sp. RS-1] Length = 824 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 119 AFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 + + + + L AH E S + L+E Sbjct: 704 SVTLAAPEGFVRVFLDAGPRMAKLLYRAGSPAAHRLLEAFPPTIRERSATLSELSEPLSE 763 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G T +IA +L +S++TV ++ S KL +R A+A+A + Sbjct: 764 RERDILRLMARGLTYRQIASELMISINTVRYHVKSLYSKLQVSSRTLALARARDLHLL 821 >gi|163845622|ref|YP_001633666.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523324|ref|YP_002567794.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666911|gb|ABY33277.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447203|gb|ACM51469.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 213 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA------HGACYQVITDFLELFKKRSSAARNLTER 177 L NGYV+ + L + H A + + + L + +L+ER Sbjct: 94 LAAGANGYVLKRAADAELIAAIRAVLRGELYIHPALTRQLLEDLLPQTPALNPWESLSER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L GYT+ EIAE+L LS TV Y KL +R + A+ + Sbjct: 154 EREVLLLVARGYTAAEIAEQLSLSPKTVETYRTRGMEKLGLRSRAALVQYALNHNLL 210 >gi|330964999|gb|EGH65259.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 785 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 721 SDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 780 Query: 231 FGYI 234 G + Sbjct: 781 LGLL 784 >gi|329936902|ref|ZP_08286581.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329303827|gb|EGG47711.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 215 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + L V A G + RS L+ RE L L Sbjct: 105 AGATGYLLKDAPREELFTAVRAAARGRTVLSPAVATRLVSAVRSPGGEPLSAREREVLAL 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +L KL +R A+A A G + Sbjct: 165 VARGTPNREIARALFISEATVKTHLTHLYGKLGVKDRAAAVAAAYDRGIL 214 >gi|299141524|ref|ZP_07034660.1| transcriptional regulator, LuxR family domain protein [Prevotella oris C735] gi|298576860|gb|EFI48730.1| transcriptional regulator, LuxR family domain protein [Prevotella oris C735] Length = 318 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE + G +++EIAE L +SV+TV + + KL + AI Sbjct: 249 DQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 HLV 311 >gi|281425332|ref|ZP_06256245.1| hypothetical protein HMPREF0971_02305 [Prevotella oris F0302] gi|281400625|gb|EFB31456.1| transcriptional regulator, LuxR family domain protein [Prevotella oris F0302] Length = 318 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE + G +++EIAE L +SV+TV + + KL + AI Sbjct: 249 DQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 HLV 311 >gi|269128746|ref|YP_003302116.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313704|gb|ACZ00079.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 220 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ EIA +L L TV Y+ + +L+ NR+QA A G Sbjct: 158 LTGRERDVLGLLGQGLSNAEIAARLHLVEGTVKGYVSTILQRLNVENRVQAAILAYEAGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|198276688|ref|ZP_03209219.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135] gi|198270213|gb|EDY94483.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135] Length = 195 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + A L+ RE L+L G ++EIA+KL +S+ TV ++ + T KL Sbjct: 116 HHPVTPPATDAEHELSAREIEVLRLVTKGLINKEIADKLHISLTTVISHRKNITEKLGIK 175 Query: 220 NRIQAIAKAIRFGYI 234 + A+ GYI Sbjct: 176 SVSGLAIYAVMHGYI 190 >gi|152972576|ref|YP_001337722.1| DNA-binding transcriptional activator UhpA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578067|ref|YP_002235913.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae 342] gi|238897178|ref|YP_002921926.1| DNA-binding transcriptional activator UhpA [Klebsiella pneumoniae NTUH-K2044] gi|262040431|ref|ZP_06013674.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288932920|ref|YP_003436979.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|330005258|ref|ZP_08305212.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Klebsiella sp. MS 92-3] gi|150957425|gb|ABR79455.1| response regulator (activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206567125|gb|ACI08901.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae 342] gi|238549508|dbj|BAH65859.1| two-component regulatory system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042184|gb|EEW43212.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288887649|gb|ADC55967.1| two component transcriptional regulator, LuxR family [Klebsiella variicola At-22] gi|328536305|gb|EGF62672.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Klebsiella sp. MS 92-3] Length = 197 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 6/118 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQ--VITDFLELFKKRSS 169 A I V + L+ + +I A K + Sbjct: 74 ATIMLSVHDSPALIEQALNAGARGFLSKRCSPDELIAAVRTVAAGGCYLTPDIAMKLAAG 133 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE + G +EIA +LGLS TV+ + + KL N ++ + Sbjct: 134 RQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELARR 191 >gi|326329224|ref|ZP_08195550.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325952959|gb|EGD44973.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 232 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 2/142 (1%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGA 152 + + + + + L + +R G + L+ A + Sbjct: 91 AALTQRHPEALILVLTTFLDEQLVMQAIRAGARGYVVKDVDTTGLVRAIRDVASGGSAFD 150 Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + +S LT RE L+L G ++ I +L +S T ++G+ Sbjct: 151 ARSAAAMIRGVNMPVTSDDSELTSRELEVLELLAHGLSNRAIGHRLYISDTTAKFHVGNI 210 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL R +A+ +A + G + Sbjct: 211 LRKLGVSRRAEAVYEASKMGLL 232 >gi|326331305|ref|ZP_08197597.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950938|gb|EGD42986.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 112 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 2/113 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + +S + A + GA L A LT RE Sbjct: 2 LTGRALAEVGDTESSRRELEAARTVFRQIGAVPAADEAEALLAPASLPA--GLTAREAEV 59 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ +IA L LS TV +L + KLD +R A A A G + Sbjct: 60 LRLVASGRSNAQIATDLVLSEKTVARHLSNIFTKLDVRSRTAATAFAYEHGVV 112 >gi|300785793|ref|YP_003766084.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795307|gb|ADJ45682.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 888 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + LTERE S L+L + +EIAE L +S +TV ++ KLD Sbjct: 805 AVRRRLRTPPMPAPLTERERSVLRLLPTQRSIDEIAEDLTVSPNTVKTHVRGIYAKLDVR 864 Query: 220 NRIQAIAKAIRFGYI 234 +R +A+ A G + Sbjct: 865 SRREAVTIAQERGLL 879 >gi|291003373|ref|ZP_06561346.1| two component transcriptional regulator, LuxR family protein [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L+ RE LQL DG +++EI E L LS TV ++L KL +R Q +A A+ Sbjct: 156 TPRELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAM 215 Query: 230 RFGYI 234 R G I Sbjct: 216 RAGVI 220 >gi|209516356|ref|ZP_03265213.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209503292|gb|EEA03291.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 225 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 8/143 (5%) Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN---GYVIFTSEFLMLANEVIIEAHGACYQ 155 +G G + + F G + +FL Sbjct: 75 GENGLEFQDAMGRIGLRIPVVFVTGHGDIEMSVKAMKAGAMDFLTKPFREQDVLDAVSRA 134 Query: 156 VITDFLELFKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + D L ++S + +LT RE L G +++IA ++ +S TV + G Sbjct: 135 LAKDRERLCAEQSIGSLRATYESLTPREREVAGLVLAGLLNKQIAAEMNVSEITVKMHRG 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 KL A + ++ + K G Sbjct: 195 QVMKKLSARSVVELVDKLRSLGI 217 >gi|157147038|ref|YP_001454358.1| hypothetical protein CKO_02815 [Citrobacter koseri ATCC BAA-895] gi|157084243|gb|ABV13921.1| hypothetical protein CKO_02815 [Citrobacter koseri ATCC BAA-895] Length = 209 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 17/157 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLANEV 145 + E+ L RL F I + G + ++ E Sbjct: 53 LDIAMPDENGLSLLKRLRAQKPTFRAIVLSIYDTPAFVQSALDAGASGYLTKRCGP--EE 110 Query: 146 IIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +++A H C + L ++ + LT RE L G + +EIA K Sbjct: 111 LVQAVRSVGMGGHYLCADAL-RALRGGEQPAQVLEVLTPREREVFDLLVKGDSVKEIAFK 169 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV+ + + KL + I + A+ + Sbjct: 170 LDLSHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 206 >gi|148242300|ref|YP_001227457.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147850610|emb|CAK28104.1| Possible two-component system response regulator [Synechococcus sp. RCC307] Length = 228 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 3/121 (2%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAARN 173 G PV + + E I A + + L + + Sbjct: 106 GDVIPVEFSDADWLQAVVAEADFVDDQKPLEAAIIAVMGNHGYRSVSLRSGQLPYLSCPR 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G + EIAEKL +S T Y L+ NR+QA+ K +R G Sbjct: 166 LTPREYEVLDLLASGLSDREIAEKLIVSEETSRTYTKRLLRTLEVNNRVQAVLKGMRCGM 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|126461161|ref|YP_001042275.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|126102825|gb|ABN75503.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] Length = 203 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 56/214 (26%), Gaps = 21/214 (9%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 + ++ A F + Q +Y D + D + Sbjct: 11 ISQLRRMATAGYFLGLHVRFTSPLITMQ-------SYREDWIEYYTEKGYVIYDPTIRWA 63 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 S W + E+ G+ F Sbjct: 64 LSETGHRRWSDLAEQDSRG-----VFAAATQFDLRFGVTCS-WGTRESRSLGSFARSDRE 117 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + + + F L + LT+ + L+ G A KLG+ Sbjct: 118 FTDREV-------ELIFSLFQRLHELTQPPQE-LTQPQIEALRCIAGGDRHAAAAMKLGI 169 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S + A + SA +L A +AI +A + I Sbjct: 170 SESALKARIASARQRLGARTTAEAIQRAKEYRLI 203 >gi|118478620|ref|YP_895771.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196043062|ref|ZP_03110301.1| response regulator [Bacillus cereus 03BB108] gi|118417845|gb|ABK86264.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196026546|gb|EDX65214.1| response regulator [Bacillus cereus 03BB108] Length = 597 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ +G + IA KL LS T+ Y + KL NR +AI A Sbjct: 536 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTEN 595 Query: 233 YI 234 + Sbjct: 596 IL 597 >gi|29345566|ref|NP_809069.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253571711|ref|ZP_04849117.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298384488|ref|ZP_06994048.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|29337458|gb|AAO75263.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251838919|gb|EES67004.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298262767|gb|EFI05631.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 220 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E + L+ G T++EIA + LS HT+N++ + KL N +A A+R G Sbjct: 153 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|304382776|ref|ZP_07365260.1| transcriptional regulator [Prevotella marshii DSM 16973] gi|304336095|gb|EFM02341.1| transcriptional regulator [Prevotella marshii DSM 16973] Length = 318 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L++RE + G T++EIA+ L +S++TV + + KL + AI Sbjct: 249 ESLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 NLV 311 >gi|256421177|ref|YP_003121830.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256036085|gb|ACU59629.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 211 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARN 173 + + ++ G + E L+ ++ Q + + + Sbjct: 91 RSMVLQMLQQGASGYLLKNISGEELIACIHEALDGQITFSQAVKEIMSRPSVTELKGVPR 150 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQL +G T+ +IA L LS TV + S K + N I A+ Sbjct: 151 LTKREKEILQLIAEGQTTPDIAATLHLSPLTVETHRKSLLQKFEVKNVALLIRTAVEQKL 210 Query: 234 I 234 + Sbjct: 211 L 211 >gi|149189059|ref|ZP_01867347.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148837022|gb|EDL53971.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 216 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +LT RE L+ G ++ +I+E L ++ TV ++L KL NR+QAIA Sbjct: 150 SPTVVDLTAREIEILRCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAW 209 Query: 228 A 228 A Sbjct: 210 A 210 >gi|119513392|ref|ZP_01632424.1| Transcriptional Regulator with GAF sensor, LuxR family protein [Nodularia spumigena CCY9414] gi|119461942|gb|EAW42947.1| Transcriptional Regulator with GAF sensor, LuxR family protein [Nodularia spumigena CCY9414] Length = 224 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 55/216 (25%), Gaps = 29/216 (13%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 + I ++ +Y I+ + + + + Sbjct: 24 ALMDKIGEYFGVQHCGIYLIDEQPSSEIN------VQTIPAVCMENNPVGRY-----VVE 72 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 +I + + P+ G + Sbjct: 73 RHAPTHEQLILSPGDWKHFCSR-----------HDHEHVMTGPIVCDGQLVGTLNLARNQ 121 Query: 139 --LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTS 191 + I + C + L K + + LT RE +L G T+ Sbjct: 122 GTEAFNADDIADLSALCIHLSAKLATLRAKEARISNSLLVSPLTARELEIAELVAQGLTN 181 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 EI +L ++ ++V L KL R + +AK Sbjct: 182 AEIGRRLWITQNSVKQALKRMFRKLGVSARSEMVAK 217 >gi|159042867|ref|YP_001531661.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157910627|gb|ABV92060.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 203 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 48/184 (26%), Gaps = 14/184 (7%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + + Y + D D L W I + Sbjct: 34 LLDYQTYPQEWKDRYTEQAYALRDPLLAWGFGMTGATRWSEIGIPDPFG-----ILDDAA 88 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 G+A ++ I ++ ++ Sbjct: 89 RFGLNYGVAVSC-GEISSRTIAGAARSDREFTDDEISAIQTIVLRLH--------DTTTP 139 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT+ + L G A KLG+S + A L +A KL A +AI +A Sbjct: 140 PDSLTKAQIEALGHIAAGDRHTAAAAKLGISESALKARLTAARQKLMARTTAEAIQRAKD 199 Query: 231 FGYI 234 + + Sbjct: 200 YRLL 203 >gi|331001406|ref|ZP_08325026.1| transcriptional regulator, LuxR family [Parasutterella excrementihominis YIT 11859] gi|329568288|gb|EGG50099.1| transcriptional regulator, LuxR family [Parasutterella excrementihominis YIT 11859] Length = 220 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 25/47 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LT RE ++L G ++EIAE+LG++ TV + S KL Sbjct: 140 LTGRELDIVRLITKGLNNKEIAEELGIAEKTVKVHRSSIYRKLQVRT 186 >gi|311107673|ref|YP_003980526.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310762362|gb|ADP17811.1| bacterial regulatory protein, LuxR family protein 10 [Achromobacter xylosoxidans A8] Length = 221 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182 GY+ S LA V + G LT+R+ L Sbjct: 95 RAGVAGYMPKASSPDALAAAVSLVMAGGECYPQPAARPQGASHPPTQELRELTQRQEEIL 154 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G T EI +++G+SV TV ++ + KL+A N+ +A A++ G + Sbjct: 155 QLLVQGKTMREIGQQVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMGLV 206 >gi|225175237|ref|ZP_03729233.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169413|gb|EEG78211.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 215 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A E +++ ++V++ + + S + LTE E L L +G T+++IAE+ Sbjct: 116 ERVAAGESLLDPQ-VTFKVLSQMKNIAAGKQS-GKTLTEMEKKVLLLIAEGKTNKQIAEE 173 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ TV Y+ +KL+ NR A A Sbjct: 174 IFLAEKTVRNYVSKIFLKLNLSNRAAAAAY 203 >gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 220 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTER 177 LG F E L +++ I + R A +LT+R Sbjct: 97 LGCDAYLAKPFNLEELAAVIRNLLDRVQIVQTEIQAVSQATPSREPVDTALINALDLTQR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G ++ +I E+L LS TV Y+ K + NR + + A+ + Sbjct: 157 EQQVLRLLMEGLSNAQIGEQLHLSSRTVEKYVSKLLQKTETSNRAEIVRFAMEHNLL 213 >gi|160887524|ref|ZP_02068527.1| hypothetical protein BACOVA_05544 [Bacteroides ovatus ATCC 8483] gi|260171218|ref|ZP_05757630.1| putative transcriptional regulatory protein [Bacteroides sp. D2] gi|293371021|ref|ZP_06617563.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|299146534|ref|ZP_07039602.1| transcriptional regulator [Bacteroides sp. 3_1_23] gi|156107935|gb|EDO09680.1| hypothetical protein BACOVA_05544 [Bacteroides ovatus ATCC 8483] gi|292633951|gb|EFF52498.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|298517025|gb|EFI40906.1| transcriptional regulator [Bacteroides sp. 3_1_23] Length = 216 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G ++ + + + ++ AH IT+ L + + LT E L+L Sbjct: 103 GMILKENSGEEIHSALMCTAHGERFLCHQITNLLIIGSDKPEIHSVLTVTEIDILKLIAH 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +EIA + S+HT+ + + KL N +A +R G I Sbjct: 163 GKSVKEIALERTSSIHTIITHKKNIFRKLGVNNVYEATKYTLRAGLI 209 >gi|307322352|ref|ZP_07601713.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306891999|gb|EFN22824.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 184 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 G G + + + A + + L+L + R Sbjct: 60 TGRGDIGITVRAMKAGAHDFLEKPASSAAVLEAVERALQLCETRRKEHDRAQALHTLLAS 119 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ L G ++++A +L S TV A+ KL + + ++ A R G Sbjct: 120 LTPRESQVFDLIVRGKRNKQVAFELNTSERTVKAHRHKVMEKLGVRSLAEVVSMAERLGL 179 Query: 234 I 234 + Sbjct: 180 L 180 >gi|298247591|ref|ZP_06971396.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550250|gb|EFH84116.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDG 188 +++ E + V + L + + + LT+RE L G Sbjct: 124 ARGEMLIQPETMARLLSHATSV-SPALSVSRSQHPQGAGISGSIALTKRERQVLAGVAQG 182 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+EIA +LG++ TV AYL S KL+ +R A+A A+ +G + Sbjct: 183 ERSKEIAVRLGITERTVRAYLTSIYTKLNVDSRASAVAVALAYGLL 228 >gi|300024660|ref|YP_003757271.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526481|gb|ADJ24950.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 207 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L +G+T+ +IA + G+S +TV +L + KL NR A+A Sbjct: 140 PLEGLTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVAL 197 >gi|256396759|ref|YP_003118323.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362985|gb|ACU76482.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 219 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + ++ LT RE L G ++ +I + L LS TV A++ KL Sbjct: 141 RVADRAEQAVKLLAELTPRERDVLAELARGLSNAQIGKSLFLSEATVKAHVSRVMAKLGV 200 Query: 219 VNRIQAIAKAIRFGYI 234 NR+QA G + Sbjct: 201 ANRVQAALVGRDAGLL 216 >gi|170692985|ref|ZP_02884146.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170141983|gb|EDT10150.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 210 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L++RE LQ+ G + +IA+ LS T++ + KL N + I Sbjct: 140 GDAPPHEILSDREFQVLQMLALGKSLNDIADAFALSAKTISTHKMRLMQKLGLANNAELI 199 Query: 226 AKAIRFGYI 234 AIR G + Sbjct: 200 RYAIRHGLV 208 >gi|148359909|ref|YP_001251116.1| transcriptional regulator [Legionella pneumophila str. Corby] gi|148281682|gb|ABQ55770.1| transcription regulator protein, response regulator containing CheY-like receiver domain and HTH DNA-binding domain [Legionella pneumophila str. Corby] Length = 267 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE CL L G T ++I+E L LS TVN + S K+ VN +A++KA Sbjct: 202 PLTQLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAF 261 Query: 230 RFGYI 234 R G + Sbjct: 262 RLGLL 266 >gi|320333054|ref|YP_004169765.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754343|gb|ADV66100.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 216 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEK 197 ++ + ++ + ++ LT RE L+ G +++EIA + Sbjct: 118 RAVSQGEVSITPMLASGLLYELARPEREPPGGLMTTLTARERQILEGVAAGRSNKEIARE 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L+ TV Y+ + KL NR++A A R Sbjct: 178 LELTEKTVKHYMTNVLQKLQVRNRVEAALLAQR 210 >gi|296389853|ref|ZP_06879328.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 685 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 + + + G + +L S N ++ RE L+ Sbjct: 572 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 631 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA+ + LS T+ +L + KL +R QA+ K G + Sbjct: 632 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 682 >gi|288923606|ref|ZP_06417715.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288345043|gb|EFC79463.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 152 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 3/126 (2%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + L I + + G ++ + + + I L R Sbjct: 1 MLRQLGTQDNIVATIMTPAGRAGLLLVLTPRPGTFTSADRDVIALLARHIGHLLHARLPR 60 Query: 168 SSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + A L+ RE ++L G+++++IA+ L ++VHTV ++ + NR Q Sbjct: 61 TPAPTALAALSHRERDVIELVASGHSNQQIADTLDVTVHTVKHHVTNVMRTTQCANRTQL 120 Query: 225 IAKAIR 230 R Sbjct: 121 ALLWHR 126 >gi|257482053|ref|ZP_05636094.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 687 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE L L G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 623 SDCLSVRELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKV 682 Query: 231 FGYI 234 G + Sbjct: 683 LGLL 686 >gi|116695031|ref|YP_840607.1| response regulator [Ralstonia eutropha H16] gi|113529530|emb|CAJ95877.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 208 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ +L+++E +Q+ G +++EI E L +S TV+ + A KL A + + Sbjct: 136 HADEAARLASLSDKELVVMQMLAKGMSNKEIGETLFISNKTVSTHKTRAMEKLGAKSIVD 195 Query: 224 AIAKAIRFGY 233 I A R Sbjct: 196 VIDFARRHHI 205 >gi|329941768|ref|ZP_08291033.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299485|gb|EGG43385.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 221 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +++ LTERE + L G G ++EEIA +L +S T ++ VKL A Sbjct: 140 AARSKEPAAAASLARLTEREREVMALVGLGLSNEEIARRLVVSPLTAKIHVSRTMVKLGA 199 Query: 219 VNRIQAIAKAIRFGYI 234 +R Q + A G + Sbjct: 200 RDRAQLVVLAYESGLV 215 >gi|325124210|gb|ADY83733.1| response regulator GacA (global antibiotic and cyanide control protein, LuxR/UhpA family) [Acinetobacter calcoaceticus PHEA-2] Length = 205 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 132 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDV 191 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 192 KLTHLAIRYGLI 203 >gi|302558223|ref|ZP_07310565.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302475841|gb|EFL38934.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 1026 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + L + + + T + A LT RE L+L G Sbjct: 907 AVADHLGAAPLARSAASLAQRARLALIPATREPAAACADPADALGLTSRERDVLRLVAAG 966 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +T+ IAE+L +S T + ++ + KL R +A A A R G + Sbjct: 967 HTNRRIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRVGLV 1012 >gi|302039375|ref|YP_003799697.1| LuxR family transcriptional regulator (fragment) [Candidatus Nitrospira defluvii] gi|300607439|emb|CBK43772.1| Transcriptional regulator, LuxR family (fragment) [Candidatus Nitrospira defluvii] Length = 94 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L L K+R LT RE L+L G+ ++EIA++L +SV TV A+ + K+ Sbjct: 18 DPVLPLRKRRP---EALTTREQEILELIWTGFKNKEIAQRLKISVKTVEAHRANMMKKIR 74 Query: 218 AVNRIQAIAKAIR 230 N Q + AI+ Sbjct: 75 VSNTAQLLKAAIQ 87 >gi|269795459|ref|YP_003314914.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097644|gb|ACZ22080.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 222 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 149 AHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + D L + A L TERE L L G +++EIA +L + V TV + Sbjct: 131 LTRRILREFVDRRSLRPVAAHRADGLLTEREREILLLLAQGMSNDEIARELVVEVSTVKS 190 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L KL +R+QA+ A + + Sbjct: 191 HLARMLPKLGVRSRLQAVVWAYQNRVV 217 >gi|254506507|ref|ZP_05118649.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] gi|219550681|gb|EED27664.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] Length = 211 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ + Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207 >gi|212709059|ref|ZP_03317187.1| hypothetical protein PROVALCAL_00091 [Providencia alcalifaciens DSM 30120] gi|212687971|gb|EEB47499.1| hypothetical protein PROVALCAL_00091 [Providencia alcalifaciens DSM 30120] Length = 248 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 16/208 (7%) Query: 33 FALY--TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 F ++ I A + + + ++ + DS + D F G + Sbjct: 31 FVVFDNAIIYAFEKDGAPRFLSKVEKRNSDSVNRIYQRGAYLMDPFYQELQKGGSSKVLT 90 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 + + L K + F +E + + Sbjct: 91 LKDVAPKGFYHTDYYLNFYRKTGWCDEAGLLLELSADKQLGIFFGNEDQPFLADEKKQGS 150 Query: 151 G-ACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDGYTSEEIAE 196 + +I L K+ + + LT RE + L +G S +IAE Sbjct: 151 LKEAFDIIRSIARLHKEVVPNSVSSHYRNTDLQTCFGLTPRECEVVALILEGKGSPQIAE 210 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L +S+ TV + + KLD ++++ Sbjct: 211 SLFISLGTVKNHRKNIYQKLDINSQVEL 238 >gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 223 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ L L G ++ EI + L LS TV Y+ S K + NR + + A+ Sbjct: 162 LTSRESQVLNLLARGLSNGEIGQNLHLSSRTVEKYVSSLLRKTETNNRAELVRFALDHHL 221 Query: 234 I 234 I Sbjct: 222 I 222 >gi|238785765|ref|ZP_04629738.1| hypothetical protein yberc0001_7170 [Yersinia bercovieri ATCC 43970] gi|238713348|gb|EEQ05387.1| hypothetical protein yberc0001_7170 [Yersinia bercovieri ATCC 43970] Length = 210 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + IA++L +S TV + + KLD + I + R G Sbjct: 149 LTPRERQILKLITEGACNRIIADRLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208 >gi|315038871|ref|YP_004032439.1| two-component system response regulator [Lactobacillus amylovorus GRL 1112] gi|312277004|gb|ADQ59644.1| two-component system response regulator [Lactobacillus amylovorus GRL 1112] Length = 227 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +NL+ E +Q G G +++EIA KL LS TV Y+ KL +R Q A++ Sbjct: 155 QNLSHSEWLIIQQVGFGLSNKEIAAKLFLSEGTVRNYISKILDKLQLRDRTQLAIWAVQ 213 >gi|294675445|ref|YP_003576061.1| LuxR family transcriptional regulator [Prevotella ruminicola 23] gi|294472990|gb|ADE82379.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23] Length = 213 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + LT E ++ G T++EIAE+ S+HT+ + Sbjct: 124 FISQRALEVIISQQNDEEKP-DILTATEAEIVKAIAQGKTTKEIAEERFSSIHTITTHRK 182 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL + I AIR G + Sbjct: 183 NIFRKLGINTAHELIKYAIRAGLV 206 >gi|288923247|ref|ZP_06417387.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288345421|gb|EFC79810.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 227 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 19/180 (10%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 GD+ + P + + R+ A + + Sbjct: 47 ADGDEVIEVVRR-TRP-DVVIMDLHMPGTDGITATRRITAEHPGVAVLVVTMMEDDASVF 104 Query: 131 YVIFTSEFL----MLANEVIIEAH------------GACYQVITDFLELFKKRSSAA-RN 173 + + + A G +V+ R + A Sbjct: 105 AAMRAGARGYLLKGADQDELRRAINAVANGEAIFGPGIAARVLDLLGRPPTARVNVAFPE 164 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G ++ IA L LS TV ++ + KL +R +A +A G+ Sbjct: 165 LTAREREILDHLAAGRSNSTIARSLALSPRTVANHVSNIFAKLQVADRTEAAIRAREAGF 224 >gi|182440060|ref|YP_001827779.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780729|ref|ZP_08239994.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468576|dbj|BAG23096.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661062|gb|EGE45908.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 216 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + L+L G ++ EIA L + TV ++ S KL A +R QA+ A G++ Sbjct: 154 TEREAAVLRLMARGLSNAEIAAALVVGTETVKTHVSSVLAKLGARDRTQAVIAAYESGFV 213 >gi|160885020|ref|ZP_02066023.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483] gi|156109370|gb|EDO11115.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483] Length = 200 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 5/88 (5%) Query: 152 ACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 D + L+ RE L L G ++EIA+KL +S+ TV Sbjct: 108 LHQHAHHDGYPVKDMSPMPPMQPHQEILSAREIEVLVLITKGLINKEIADKLNISLTTVI 167 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + T KL + A+ GYI Sbjct: 168 THRKNITEKLGIKSVSGLTIYAVMNGYI 195 >gi|120401636|ref|YP_951465.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119954454|gb|ABM11459.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 843 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 23/212 (10%), Positives = 49/212 (23%), Gaps = 5/212 (2%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 +L E+ L + + + L+ H L + + Sbjct: 623 TLDEVFAMLVGLGDPVLWA-VPLHWAGVHAGILANSPDSVAPHGQALTAAAPHSSFARAL 681 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 + + + + A + Sbjct: 682 AAAGRTWLKVLANQVDADEVSSAARGLAQYGHTWDATRLAGQAALQT---TDPRVSQAML 738 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + R +AA L++RE +L G Sbjct: 739 QLARDLKDAVAGEAPVDLPDGAPPSAAASAGPSGRPAAAH-LSDREREVAELLLQGLPYR 797 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +I +L +S TV ++ +L A +R + Sbjct: 798 DIGAQLFISAKTVEHHVARIRRRLGAESRSEL 829 >gi|319789390|ref|YP_004151023.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans HB-1] gi|317113892|gb|ADU96382.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans HB-1] Length = 193 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L++RE L L +G T++EIA +LG+S TV Y+ K + NR+ ++ Sbjct: 127 DSLSDRELKVLSLLVEGKTNKEIARELGISEQTVKYYINQLLKKANCSNRVNLVSL 182 >gi|319794782|ref|YP_004156422.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597245|gb|ADU38311.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 235 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 39/100 (39%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + I A Q + S LT RE L+L G ++ ++ Sbjct: 135 GGAPIDPSIARRILGWIAAQQTSLSAVLASDAPSPLPVALTPRERKILELVSQGLSNRDM 194 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L +S TV + + KL +R +A+ + R G + Sbjct: 195 AESLSISRLTVECHTKNIYRKLAVTSRTEAVFQGRRHGLL 234 >gi|254819179|ref|ZP_05224180.1| LuxR family transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 402 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 14/232 (6%) Query: 7 TGKKSSSLQELSPRLHLIQNRI--KARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + + + +L+ + I A F + + + + + D+ Sbjct: 174 WAQVALARGDLTSARRFAEEDIASGAGWFMVQALTTRARVALAENEPGQAERDTHDALTR 233 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 L L + L + + + +S + F V Sbjct: 234 AVELRAHLFVPDLLECLAQLAHLAGSHPEAARLFGASDA----VRRRTGIVR---FRVYD 286 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAA-RNLTERET 179 ++ + + A A +KR +LT E Sbjct: 287 ADYQASLEQTRNALTDKEFDAAWAAGAALSTEEAIAYARRGRGERKRPPTGWDSLTPTER 346 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L +G +++I E+L +S TV +L KL +R+Q +A R Sbjct: 347 DVVRLVAEGLGNKDIGERLFISPRTVQTHLTHVYAKLGLTSRMQLAQEAARR 398 >gi|239942897|ref|ZP_04694834.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G + R LT RE L G G ++ EIA +L L TV A Sbjct: 134 RVAGRVIAGMRAHRAAHPHR--PLERLTGREREVLAGIGTGLSNAEIAGRLHLVEGTVKA 191 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL NR++A A G + Sbjct: 192 HVSAVLAKLGVRNRVEAAIAAHEAGLL 218 >gi|167464818|ref|ZP_02329907.1| Regulatory protein related to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Paenibacillus larvae subsp. larvae BRL-230010] Length = 193 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 7/91 (7%) Query: 151 GACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ + +E+ K RS + L++RE LQ+ G ++EI ++L +S+ Sbjct: 102 RFAQRIQSFVVEVKKGRSLPLASAEQETAILSKRELEVLQVLAAGRRNKEIGKELCISLA 161 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +++ + KL NR++A+ + + Sbjct: 162 TVKSHVINIYSKLQVSNRVEAVERGRELRLL 192 >gi|16332248|ref|NP_442976.1| response regulator like-protein [Synechocystis sp. PCC 6803] gi|1653878|dbj|BAA18788.1| response regulator like protein [Synechocystis sp. PCC 6803] Length = 228 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 42/80 (52%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + + R S LT+RE + L+L +G T+ EI ++L L+ TV Y+ + Sbjct: 148 YIDSRLEAIADYRKSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMR 207 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+A +R A +R GY+ Sbjct: 208 KLNARDRTSAAIAGLREGYL 227 >gi|226228720|ref|YP_002762826.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091911|dbj|BAH40356.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 210 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 7/149 (4%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 + + IA G + L + + Sbjct: 59 DLRMPVMDGVSAIGAIRDEFPDARIIALTTYEGDEDIHRALSAGARGYLLKDTLRTELLQ 118 Query: 153 CYQVITDFLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + L + LT RE L+L G ++ +IA +LG + T+ Sbjct: 119 VIRNVYRGLRGIPAPVAARLAEYTPRVALTARELEVLELMAQGLSNPDIAIRLGRAESTM 178 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R A+ A+R G I Sbjct: 179 KVHVRNILQKLGTDDRTAAVTTALRRGII 207 >gi|198276810|ref|ZP_03209341.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135] gi|198270335|gb|EDY94605.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135] Length = 215 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +QL +GYTS+EIA +L + +TV Y KLD + I+ + A + Sbjct: 153 ELTDRELEVIQLLANGYTSKEIANELNIDRNTVETYKDRIKSKLDCKSAIEIVVFAYKNK 212 Query: 233 YI 234 I Sbjct: 213 LI 214 >gi|156975758|ref|YP_001446665.1| hypothetical protein VIBHAR_03493 [Vibrio harveyi ATCC BAA-1116] gi|156527352|gb|ABU72438.1| hypothetical protein VIBHAR_03493 [Vibrio harveyi ATCC BAA-1116] Length = 213 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L G ++++IA +L LS TV +++ KLD R AI Sbjct: 147 HDSLTSRERQILELLAYGISNQQIASQLFLSESTVKSHIYKLYKKLDVHCRHDAIKIVRM 206 Query: 231 FG 232 G Sbjct: 207 NG 208 >gi|149378247|ref|ZP_01895960.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter algicola DG893] gi|149357474|gb|EDM45983.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter algicola DG893] Length = 220 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT R+ L L DG ++ I + L L+ HTV +L + LD NR + +A+A Sbjct: 158 EHLTPRQLEVLTLLADGLPNKRICQALDLTEHTVKTHLKAIFTHLDVHNRTECVAQARAL 217 Query: 232 GYI 234 G + Sbjct: 218 GLL 220 >gi|187930859|ref|YP_001901345.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 201 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 36/75 (48%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + L+ERE L + G TS EIA LGLS TV+ ++ +A KL Sbjct: 125 ARRPRTHAAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVA 184 Query: 220 NRIQAIAKAIRFGYI 234 RI+A+ +A G I Sbjct: 185 TRIEAVVRASSAGII 199 >gi|148555438|ref|YP_001263020.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148500628|gb|ABQ68882.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 879 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET + L +GY ++EIA +LG+S TV + KL +R QAIA+A Sbjct: 819 LSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIHEKLGVASRSQAIARARDLLI 878 Query: 234 I 234 I Sbjct: 879 I 879 >gi|53717636|ref|YP_106110.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|53722543|ref|YP_111528.1| two-component response regulator [Burkholderia pseudomallei K96243] gi|76819257|ref|YP_335719.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|52212957|emb|CAH38995.1| putative two-component response regulator [Burkholderia pseudomallei K96243] gi|52423606|gb|AAU47176.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76583730|gb|ABA53204.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] Length = 223 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 150 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHW 209 Query: 228 AIRFGY 233 A R+GY Sbjct: 210 AYRYGY 215 >gi|332669618|ref|YP_004452626.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338656|gb|AEE45239.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 224 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 19/152 (12%) Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG------ 151 ++ R +A V VI + + + +A Sbjct: 73 AEVIRRCTDLQGTTRFLALSVSDAAEDVVAVIRSGARGYVTKAIDGGELSDAVRRVAGGD 132 Query: 152 ------ACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 V+ F + L+ RE ++L GYT E+A +L +SV Sbjct: 133 AVFSPRLAGFVLDAFGAAAGDVATGDDELDRLSAREREVMRLIARGYTYREVASELFISV 192 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + KL +R + A + Sbjct: 193 KTVETHVSAVLRKLQLSSRHELTRWAAARRLL 224 >gi|323357741|ref|YP_004224137.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323274112|dbj|BAJ74257.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 224 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V+ +L + LTERE L G G ++ +I ++ LS TV A++ Sbjct: 135 VSRAVVAGYLRPETGGDTRLVEGLTEREKEILVHLGRGLSNAQIGSEMFLSPATVKAHIS 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL R+ A A R G + Sbjct: 195 TILSKLGVEGRVSAALIAERAGLL 218 >gi|302390092|ref|YP_003825913.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] gi|302200720|gb|ADL08290.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] Length = 327 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT +E G T++EIA +L LS TV Y+ KL+ NR ++ A+ Sbjct: 261 PLNLLTAQEQKVFYALALGKTNKEIASELYLSPATVRNYVSKILRKLNLPNRSAVVSYAM 320 Query: 230 RF 231 + Sbjct: 321 KN 322 >gi|293373319|ref|ZP_06619677.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|292631715|gb|EFF50335.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] Length = 148 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ L++RE + G T++EIAEKL LS+HTV + + + KL + Sbjct: 70 EEEEMDNQDTLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAG 129 Query: 224 AIAKAIRFGYI 234 AI + Sbjct: 130 LTIYAIVNKLV 140 >gi|262403969|ref|ZP_06080524.1| transcriptional regulator LuxR family [Vibrio sp. RC586] gi|262349001|gb|EEY98139.1| transcriptional regulator LuxR family [Vibrio sp. RC586] Length = 222 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 16/124 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------- 169 + + G + + A I+ + D L K Sbjct: 91 VLQTLAYGAVGYVAKSCARQQMGEAFAQILRGD---VYLPADILRENVKNPPSSSLRKQA 147 Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A + LT ++ LQ G +++IA L +S TV +++ + KL NRIQA Sbjct: 148 DFSVEALQTLTRKQLQVLQSMSKGAANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQA 207 Query: 225 IAKA 228 + A Sbjct: 208 VVGA 211 >gi|254563130|ref|YP_003070225.1| transcriptional regulator, PAS domain S-box [Methylobacterium extorquens DM4] gi|254270408|emb|CAX26408.1| putative transcriptional regulator, PAS domain S-box [Methylobacterium extorquens DM4] Length = 500 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 7/104 (6%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGY 189 +E + V+ +A + +I L L + LT RE L G Sbjct: 383 TELIAAIETVMADASWFSHGIIEK-LALMRNPPPPGKPAALVEKLTRRERDLLLGICKGA 441 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T EIA +LGLS+ TV +L S K+ R + A G Sbjct: 442 TDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERGI 485 >gi|227818474|ref|YP_002822445.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227337473|gb|ACP21692.1| putative transcriptional regulator protein, LuxR family [Sinorhizobium fredii NGR234] Length = 263 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +K A L RE L L G ++ IA +LGLS +TV ++ + K++ NR Sbjct: 176 MERKTDFAQGLLRMREIQILDLICVGTPNKIIAHRLGLSENTVKVHVRNIYKKMNVHNRT 235 Query: 223 QAIAKAIR 230 +A ++ R Sbjct: 236 EAASRCFR 243 >gi|126658803|ref|ZP_01729947.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126619901|gb|EAZ90626.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 224 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ L L G ++ EI ++L LS T+ Y+ S K D NR + + A+ Sbjct: 163 LTRRESEVLDLLTTGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDHHL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + + ++TD + + + T RE S LQL +G ++EI Sbjct: 142 AARFADIDVSKMAKQITEIKSMLTDQNQANPENKINLPSFTPREASVLQLVAEGLMNKEI 201 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ +K +R + + A+ + Sbjct: 202 ARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241 >gi|121603022|ref|YP_980351.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120591991|gb|ABM35430.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 219 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT R+ L+L G +++ IA KL LS HT+ ++ + +A+ R Sbjct: 142 AAAGAIPGGDESLTPRQYEVLKLLAQGLSNKAIAFKLHLSEHTIRNHVVAILRHFNALTR 201 Query: 222 IQAIAKAIRFGYI 234 +A+ + R G + Sbjct: 202 TEAVMASQRLGLL 214 >gi|67641422|ref|ZP_00440201.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|126444300|ref|YP_001063145.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126447142|ref|YP_001077967.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126456927|ref|YP_001076095.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134281974|ref|ZP_01768680.1| BipB protein [Burkholderia pseudomallei 305] gi|166999878|ref|ZP_02265708.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167725537|ref|ZP_02408773.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167743182|ref|ZP_02415956.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167820355|ref|ZP_02452035.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167828726|ref|ZP_02460197.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167850181|ref|ZP_02475689.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167898791|ref|ZP_02486192.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167907119|ref|ZP_02494324.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167915473|ref|ZP_02502564.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167923317|ref|ZP_02510408.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217425144|ref|ZP_03456639.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|226196039|ref|ZP_03791625.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507699|ref|ZP_04520414.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242312836|ref|ZP_04811853.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254176376|ref|ZP_04883034.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254185184|ref|ZP_04891773.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254186839|ref|ZP_04893355.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254204939|ref|ZP_04911292.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254263032|ref|ZP_04953897.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254301472|ref|ZP_04968916.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|126223791|gb|ABN87296.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126230695|gb|ABN94108.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126239996|gb|ABO03108.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134246503|gb|EBA46591.1| BipB protein [Burkholderia pseudomallei 305] gi|147754525|gb|EDK61589.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|157811119|gb|EDO88289.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157934523|gb|EDO90193.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697418|gb|EDP87388.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|184215776|gb|EDU12757.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217391749|gb|EEC31776.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|225931932|gb|EEH27933.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|234999904|gb|EEP49328.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238522359|gb|EEP85804.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242136075|gb|EES22478.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243064182|gb|EES46368.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254214034|gb|EET03419.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 214 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 141 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHW 200 Query: 228 AIRFGY 233 A R+GY Sbjct: 201 AYRYGY 206 >gi|307565420|ref|ZP_07627909.1| hemerythrin HHE cation binding domain protein [Prevotella amnii CRIS 21A-A] gi|307345870|gb|EFN91218.1| hemerythrin HHE cation binding domain protein [Prevotella amnii CRIS 21A-A] Length = 318 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K A+ L++RE + G ++EIA+ L +S +TV + + KL + Sbjct: 243 KNPEASDTLSDREKEVIIALVQGMANKEIADHLCISTNTVITHRRNIARKLQIHSPAGLT 302 Query: 226 AKAIRFGYI 234 AI + Sbjct: 303 IYAIVNNLV 311 >gi|262280669|ref|ZP_06058452.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|299771874|ref|YP_003733900.1| response regulator [Acinetobacter sp. DR1] gi|262257569|gb|EEY76304.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|298701962|gb|ADI92527.1| response regulator [Acinetobacter sp. DR1] Length = 211 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|262275113|ref|ZP_06052924.1| transcriptional regulator LuxR family [Grimontia hollisae CIP 101886] gi|262221676|gb|EEY72990.1| transcriptional regulator LuxR family [Grimontia hollisae CIP 101886] Length = 222 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 10/119 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSA--- 170 I + G E + A E I++ H + + +++ Sbjct: 91 ILQTIAYGAVGFIAKSAPRERMRDAFEKILDGHVYLPADIIRAEGEGETSQRRKEDPQFS 150 Query: 171 ---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT R+ L+ G +++IA L +S TV +++ + KL NRIQA+ Sbjct: 151 PEMLHTLTRRQLLVLKSMAQGAANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVV 209 >gi|258652113|ref|YP_003201269.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555338|gb|ACV78280.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 230 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 10/160 (6%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGYVIF 134 L G +P +++ VI+ S ++ G G A P + Sbjct: 80 VLRALQRGSIP---RTVLVARVIDDSTLVAAAEAGVGGLLRRGDATP---DSLARAILRV 133 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + +++ G ++ L R A L++RE L+L +G+ + EI Sbjct: 134 AAGEGEVPPDLLGRLLGQVGRLQRQVLA---PRGLAFSGLSDREAEVLKLVANGHDTAEI 190 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S TV L T +L NR A+A A+R G I Sbjct: 191 AGRLSYSQRTVKNILHDVTTRLQLRNRSHAVAYAVREGLI 230 >gi|212710646|ref|ZP_03318774.1| hypothetical protein PROVALCAL_01712 [Providencia alcalifaciens DSM 30120] gi|212686727|gb|EEB46255.1| hypothetical protein PROVALCAL_01712 [Providencia alcalifaciens DSM 30120] Length = 208 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 C + L ++ + LT RE L G + + IAE+L LS TV+ + Sbjct: 123 CYLCADAM-RALRQTPQQKQGIQELTNREREVFNLLVAGLSVKVIAEQLNLSHKTVHVHR 181 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL + I + A+ I Sbjct: 182 ANVLGKLQCESTIDLVHYALEHNII 206 >gi|116493461|ref|YP_805196.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103611|gb|ABJ68754.1| DNA-binding response regulator (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 191 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE S L+ A G ++ +A+KL LS TV YL + KL NR++AI A + Sbjct: 129 PLSEREMSVLKAAVSGDATKVMAQKLFLSEGTVRNYLSAIFSKLGVHNRLEAIEVAKKNK 188 Query: 233 YI 234 +I Sbjct: 189 WI 190 >gi|114563003|ref|YP_750516.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114334296|gb|ABI71678.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] Length = 216 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT ++ L + +G +++IA +L LS T+ ++ + +KL NR QA+ Sbjct: 149 SLTPQQRKILLMFAEGLLNKQIAYELNLSESTIKSHASTIFLKLGVKNRTQAVIL 203 >gi|330809600|ref|YP_004354062.1| two-component Response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377708|gb|AEA69058.1| Putative two-component Response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 210 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE+ L G ++E+A +L +SV TV + S KL+ + Sbjct: 142 PNTDSELTPRESQVLAKMVQGLNNKEMARELDISVRTVETHRLSIRRKLNIDKPAALVKY 201 Query: 228 AIRFGYI 234 AI G I Sbjct: 202 AIDHGII 208 >gi|304413478|ref|ZP_07394951.1| UvrY transcriptional regulator [Candidatus Regiella insecticola LSR1] gi|304284321|gb|EFL92714.1| UvrY transcriptional regulator [Candidatus Regiella insecticola LSR1] Length = 222 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A Q+ +L + + L++RE + + G EIAE+L Sbjct: 116 RAVHAGQRYIASDIAQQM--ALSQLQPQAEAPFDCLSDRELQIMLMITKGKKVNEIAEQL 173 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS TVN+Y KL ++ AIR G+ Sbjct: 174 HLSPKTVNSYRYRMFEKLKINGDVELTHLAIRHGF 208 >gi|290957183|ref|YP_003488365.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260646709|emb|CBG69806.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 974 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 40/86 (46%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A ++ + LT RE+ L+L G T+ +I ++L ++ T + + Sbjct: 886 LRAALDALVRRGRLAETSTAGNVPALTARESDVLRLLALGRTNRQIGDELFITGKTASVH 945 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL A +R +A+A A R G I Sbjct: 946 VSNILAKLGAASRTEAVAIAYREGLI 971 >gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 242 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + T RE S LQL +G ++EIA KL S+ V Y+ +K +R + + A+ Sbjct: 179 PSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALEN 238 Query: 232 GYI 234 + Sbjct: 239 HLV 241 >gi|332716184|ref|YP_004443650.1| two component response regulator [Agrobacterium sp. H13-3] gi|325062869|gb|ADY66559.1| two component response regulator [Agrobacterium sp. H13-3] Length = 783 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F+ +++V V + L++RE LQL G ++++ Sbjct: 689 RIRGFIETSSDVRNALSIFAASVNSPQARALHG------GLSQREAQMLQLLASGMSNKK 742 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA+ L +S TV +LG+ KLD R +AI A G++ Sbjct: 743 IAQTLNISEVTVKFHLGNLFRKLDCKRRAEAIRAAKALGWL 783 >gi|312199753|ref|YP_004019814.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231089|gb|ADP83944.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 246 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L L T+ EIA++L +S TV ++G KL +R+Q +A A G I Sbjct: 176 DREHDVLLLVAQARTNREIADELHVSEATVKVHVGRILAKLGLRDRVQTVAFAYETGLI 234 >gi|269968356|ref|ZP_06182375.1| Nitrate/nitrite response regulator protein narP [Vibrio alginolyticus 40B] gi|269827042|gb|EEZ81357.1| Nitrate/nitrite response regulator protein narP [Vibrio alginolyticus 40B] Length = 76 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE+ L+ G+ +++IA++L +S TV ++ S KL +R A + Sbjct: 12 DTLTDRESQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 71 >gi|260770808|ref|ZP_05879737.1| transcriptional regulator LuxR family [Vibrio furnissii CIP 102972] gi|260614045|gb|EEX39235.1| transcriptional regulator LuxR family [Vibrio furnissii CIP 102972] gi|315178850|gb|ADT85764.1| transcriptional regulator, LuxR family protein [Vibrio furnissii NCTC 11218] Length = 209 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203 >gi|262200217|ref|YP_003271425.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083564|gb|ACY19532.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 489 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + + LTERE L+ DG ++ EIA L +S TV ++ +KL Sbjct: 415 REAGHVSTPTTDTLDALTERERDVLRCVSDGLSNAEIAAALVISEATVKTHVSRILMKLG 474 Query: 218 AVNRIQAIAK 227 +R+QA Sbjct: 475 LQSRVQAAIF 484 >gi|302525783|ref|ZP_07278125.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434678|gb|EFL06494.1| two-component system response regulator [Streptomyces sp. AA4] Length = 221 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L+ RE LQL DG +++EI E+L LS TV ++L KL +R Q +A A+ Sbjct: 156 TPRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALAM 215 Query: 230 RFGYI 234 R G I Sbjct: 216 RAGVI 220 >gi|254488693|ref|ZP_05101898.1| DNA-binding response regulator, LuxR family [Roseobacter sp. GAI101] gi|214045562|gb|EEB86200.1| DNA-binding response regulator, LuxR family [Roseobacter sp. GAI101] Length = 233 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +LT ++ LQL +G +++IA +L ++ TV A++ + KL +R Q Sbjct: 156 SDANLARLASLTNQQYRILQLICEGKLNKQIAFELSIAETTVKAHVTAIMRKLGVQSRTQ 215 Query: 224 AIAKAIRF 231 A+ A Sbjct: 216 AVLVAHEA 223 >gi|119492940|ref|ZP_01623970.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106] gi|119452866|gb|EAW34040.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106] Length = 121 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 37/68 (54%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +L + +S + L++RE +L +G ++ IA++LG+S TV+ YL KL+ Sbjct: 45 YLVRCQPKSDQSVQLSQREQEIAKLVAEGLPNKCIAKELGISQWTVSTYLRRIFGKLNVT 104 Query: 220 NRIQAIAK 227 NR AK Sbjct: 105 NRAAMTAK 112 >gi|74317308|ref|YP_315048.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74056803|gb|AAZ97243.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 209 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L++RE ++L G + +IA+KL LS T++ Y + KL N + + Sbjct: 141 DERAPHEQLSDREFQIVRLIAQGESLNQIADKLSLSAKTISTYKARSMQKLGISNHTELV 200 Query: 226 AKAIRFGYI 234 AI +I Sbjct: 201 RYAIAHHWI 209 >gi|27377870|ref|NP_769399.1| response regulator FixJ [Bradyrhizobium japonicum USDA 110] gi|120201|sp|P23221|FIXJ_BRAJA RecName: Full=Transcriptional regulatory protein fixJ gi|39524|emb|CAA40144.1| fixJ [Bradyrhizobium japonicum] gi|3021310|emb|CAA06275.1| FixJ protein [Bradyrhizobium japonicum] gi|27351016|dbj|BAC48024.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 205 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 41/98 (41%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 F +IE+ + + + ++ +L+ RE ++ G +++ IA Sbjct: 106 PFEDDRLTAMIESAIRQAEPAAKSEAVAQDIAARVASLSPRERQVMEGLIAGLSNKLIAR 165 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +S T+ Y + K+ A + + + A+R G + Sbjct: 166 EYDISPRTIEVYRANVMTKMQANSLSELVRLAMRAGML 203 >gi|116748029|ref|YP_844716.1| two component LuxR family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697093|gb|ABK16281.1| two component transcriptional regulator, LuxR family [Syntrophobacter fumaroxidans MPOB] Length = 206 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 5/118 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175 P+ + K+G V F + ++ A + +K +L+ Sbjct: 86 TIPMSVRAVKSGAVDF--LQKPCDEQDLLRAIHRAIEQDRRTRREKEKLREIHKLIDSLS 143 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE G ++++A +LG + T+ A+ K+ A + + A + G Sbjct: 144 PREHEVFTHLVSGMLNKQVAYRLGTTERTIKAHRRRIMEKMKADSMADLVRYAEKLGL 201 >gi|300088598|ref|YP_003759120.1| MalT-like ATP-dependent transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528331|gb|ADJ26799.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 904 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 34/74 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L L++RE L+L G ++ +I E++ L++ TV + KL Sbjct: 831 LSPCPSVQPLIEPLSQRELEILRLMAQGLSNRQICERVFLALDTVKGHNRKIFDKLQVQR 890 Query: 221 RIQAIAKAIRFGYI 234 R AIA+A FG + Sbjct: 891 RTGAIARAREFGLL 904 >gi|312200777|ref|YP_004020838.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311232113|gb|ADP84968.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 225 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 145 VIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + A +++ F + R LT RE L G T+ EIA +L +++ Sbjct: 131 DALIAPAVTARLLAAFADAGPGRPPRQPVEPLTGREEQVLAAVARGRTNNEIAAELYITL 190 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIR 230 TV ++ S KL A NR++ A Sbjct: 191 STVKTHVASLMAKLAARNRVEIAIWAYE 218 >gi|260774199|ref|ZP_05883114.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP 69.14] gi|260611160|gb|EEX36364.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP 69.14] Length = 263 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 54/221 (24%), Gaps = 29/221 (13%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLD---SGDIPNILIETYGDDFLFHFNSGLLPII 88 F + L + + + I + Y D F + Sbjct: 31 RFVTFDCAVILGYRQHKHPIYLYDSLPSQRQLLFQHYLTHSYRY-DPFYVAIVEQQQTGV 89 Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK--NGYVIFTSEFLMLANEV- 145 Q + + V V + V L ++ Y+ ++ + Sbjct: 90 LQRSEFKPVNPLQENYHVDFYQKTGWQDEVCIAVDLEDNRWIVIYLGMLQTDQPISQQQI 149 Query: 146 ------------IIEAHGACYQVITDFLELFKK----------RSSAARNLTERETSCLQ 183 + H + + A LT RE Sbjct: 150 NGLKQSFTVLQALCRQHWGSQALFLAENSQSEHDLRHWVAAAIADFATDCLTPREQQITT 209 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G S+EIA +L +S TV + +L + + Sbjct: 210 LLVQGLDSQEIAAQLSISHGTVKNHRKRIYQQLQISSLSEL 250 >gi|238760511|ref|ZP_04621646.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] gi|238701263|gb|EEP93845.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] Length = 209 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 13/160 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + ES L RL + F I + G + ++ Sbjct: 48 VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107 Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 +E++ L ++ LT RE QL +G + + I Sbjct: 108 P-HELVQALRTVNGGGLYLCADALRALRHMPQQPQQLAILTPREKEVFQLLINGISVKNI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+L LS TV+ + + KL+ ++ + A++ + Sbjct: 167 AEQLLLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206 >gi|291286070|ref|YP_003502886.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290883230|gb|ADD66930.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 193 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE + G ++ EIA+ + ++V TV A+L S K +R +A A+R Sbjct: 138 LSEREMEVARYVAQGQSNIEIADNMDITVRTVKAHLTSIFNKTGLRDR---VALALRL 192 >gi|134103056|ref|YP_001108717.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008989|ref|ZP_06566962.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915679|emb|CAM05792.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 215 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 26/64 (40%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE G ++ EIA L +S+ TV ++G KL NR Q A Sbjct: 151 RMEELTAREREVAVAVAQGMSNAEIAGNLHMSLSTVKVHIGRIMTKLGMANRTQVAILAH 210 Query: 230 RFGY 233 G Sbjct: 211 DAGL 214 >gi|91782267|ref|YP_557473.1| ATP-dependent transcription regulator LuxR [Burkholderia xenovorans LB400] gi|91686221|gb|ABE29421.1| ATP-dependent transcriptional regulator, MalT related, LuxR family [Burkholderia xenovorans LB400] Length = 251 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 139 LMLANEVIIEAHGACYQ----VITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTS 191 + H C Q ++ + + LT RET L+L +G ++ Sbjct: 148 RQAEISFLDRLHEICSQSDGDALSQTAHPAELTAGPVDEVQPLTARETQLLRLVNEGLSN 207 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +A++L LS+ TV +L + KL NR A+AKA +G + Sbjct: 208 QTVADQLSLSLPTVKWHLRNLYDKLGVRNRSAALAKARAYGLL 250 >gi|261821062|ref|YP_003259168.1| LuxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261605075|gb|ACX87561.1| two component transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 209 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 11/159 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---- 142 I I ES L RL F I + + L Sbjct: 48 IDVAVIDIAMPDESGLSLLNRLRQQRPNFRAIILSIYDTTAFVQSALDAGAGGYLTKRCG 107 Query: 143 NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIA 195 E +++A + ++ LT RE L +G + + IA Sbjct: 108 PEELVQAVRVVSSGGLYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSIA 167 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+L LS TV+ + + KL + ++ + A++ + Sbjct: 168 EQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206 >gi|297202823|ref|ZP_06920220.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717613|gb|EDY61647.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 217 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + R +TERE L+L +G+T++EI E L +S TV + + KL +R Sbjct: 143 RLHRGDDLPRRAVTEREEEILKLVAEGHTTKEIGELLFISAKTVERHRANLLHKLGMRDR 202 Query: 222 IQAIAKAIRFGYI 234 ++ AIR G I Sbjct: 203 LELTRYAIRAGLI 215 >gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 204 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%) Query: 139 LMLANEVIIEAHGACYQV-ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193 + ++I + + K ++ A+ LT RE L G T+ E Sbjct: 105 PVEPADLIAAVQARLRRAQAANPARPAKGEAAPAQLEPLGLTPREAEILFWVAQGKTNPE 164 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 IA LG+ + TV +L + VKL NR A A A+ Sbjct: 165 IATILGIGLTTVKKHLEAVFVKLGVENRTSAAALALEQ 202 >gi|168231547|ref|ZP_02656605.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168240384|ref|ZP_02665316.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261008|ref|ZP_02682981.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465653|ref|ZP_02699535.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194445419|ref|YP_002039793.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448069|ref|YP_002044584.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471844|ref|ZP_03077828.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734277|ref|YP_002113562.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930612|ref|ZP_03221542.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911321|ref|ZP_04655158.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194404082|gb|ACF64304.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406373|gb|ACF66592.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458208|gb|EDX47047.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709779|gb|ACF89000.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631799|gb|EDX50319.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|204320546|gb|EDZ05749.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205334067|gb|EDZ20831.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340203|gb|EDZ26967.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205350008|gb|EDZ36639.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 210 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I A Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208 Query: 233 YI 234 + Sbjct: 209 LL 210 >gi|167471072|ref|ZP_02335776.1| response regulator UvrY [Yersinia pestis FV-1] Length = 197 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 3/112 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181 G + ++ A ++ I + L + A L+ERE Sbjct: 76 GAGGYLSKGAAPQDVITAIRMVHAGQRYIASDIAQQMALSQLEPPAETPFSCLSERELQI 135 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + G EI+E+L LS TVN+Y KL+ ++ AIR G Sbjct: 136 MIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 187 >gi|21218760|ref|NP_624539.1| LuxR family two-component response regulator [Streptomyces coelicolor A3(2)] gi|5777679|emb|CAB53428.1| putative luxR family two-component response regulator [Streptomyces coelicolor A3(2)] Length = 233 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 4/106 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLA 185 G + ++ + + +++A +++ ++ LT+RE L+L Sbjct: 119 QGSDLVSAVRTVARGQSLLDASAT-TKLMARLRGGGQQPVEEPEMLPGLTDREREILELI 177 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G+G T+ +I ++L L+ TV ++ KL RIQA A + Sbjct: 178 GEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 223 >gi|332886331|gb|EGK06575.1| hypothetical protein HMPREF9456_00449 [Dysgonomonas mossii DSM 22836] Length = 218 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 C +V L+ K + + LT E L+ G T++EIA LS HT+ + Sbjct: 127 FICARVANQLLQAQKAPTDTVDHILTSTEKEILKEIAIGRTTKEIAANRNLSFHTIITHR 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ N +A A+R G I Sbjct: 187 KNIFRKLEVNNVHEATKYAMRAGLI 211 >gi|291447955|ref|ZP_06587345.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291350902|gb|EFE77806.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 1092 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194 + V+ A A + E ++ A LT RE +L G+T+ +I Sbjct: 990 GPDAGIPPAVLAPASAADRPGRSRAEEEDPAIAAVASFGLTPREQDVHRLVAAGHTNRKI 1049 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 AE+L +S T + ++ + KL +R +A A A R Sbjct: 1050 AEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRLRL 1088 >gi|316935154|ref|YP_004110136.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602868|gb|ADU45403.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 208 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 13/114 (11%) Query: 127 HKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAA------RN 173 + + L + I+ + + + + + + Sbjct: 89 GDIAMAVNAIKNGALDFIEKPFRGKEIVSRVEEAIEAFSRRRDASQGSKAPSYNFPGKEP 148 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L G T++E LG+S T+ + + KL A N + Sbjct: 149 LTLREREVLELFSSGNTNKEAGRHLGISPRTIEYHRANIMKKLGARNATDLVRI 202 >gi|282878907|ref|ZP_06287671.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis ATCC 35310] gi|281298906|gb|EFA91311.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis ATCC 35310] Length = 313 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIAE L +S++TV + + KL + AI Sbjct: 244 EALSDREKEVVISLVQGMTNKEIAEHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVT 303 Query: 232 GYI 234 + Sbjct: 304 NLV 306 >gi|239979954|ref|ZP_04702478.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291451807|ref|ZP_06591197.1| two-component system response regulator [Streptomyces albus J1074] gi|291354756|gb|EFE81658.1| two-component system response regulator [Streptomyces albus J1074] Length = 235 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175 +R G T L+ + + + ++ L+ F + LT Sbjct: 117 IRGGARGYVTKNITGADLVDSIFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 176 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L GY +E+A++L +SV TV +++ + KL NR + A + Sbjct: 177 QREREVLRLIARGYAYKEVAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 235 >gi|215410428|ref|ZP_03419236.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis 94_M4241A] gi|215444983|ref|ZP_03431735.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis T85] gi|289756930|ref|ZP_06516308.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis T85] gi|294996325|ref|ZP_06802016.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis 210] gi|298524337|ref|ZP_07011746.1| nitrate/nitrite response regulator protein NarL [Mycobacterium tuberculosis 94_M4241A] gi|289712494|gb|EFD76506.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis T85] gi|298494131|gb|EFI29425.1| nitrate/nitrite response regulator protein NarL [Mycobacterium tuberculosis 94_M4241A] gi|326904936|gb|EGE51869.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium tuberculosis W-148] Length = 216 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + LP + G+++ S Sbjct: 56 DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR 115 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ + A L+ RE L + I Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACRQSIPAI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L ++ TV ++ KL +R A+A+A+R + Sbjct: 176 AAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215 >gi|213964996|ref|ZP_03393195.1| two component transcriptional regulator, LuxR family [Corynebacterium amycolatum SK46] gi|213952532|gb|EEB63915.1| two component transcriptional regulator, LuxR family [Corynebacterium amycolatum SK46] Length = 235 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A T RE L L G +++EIA +L ++ TV ++ + K + +R+ + Sbjct: 167 DPTDAGTQFTPREQEILNLVCQGLSNDEIARRLVVATTTVKTHVKALLTKTGSRSRVDLV 226 Query: 226 AKAIRFGYI 234 A + G + Sbjct: 227 IWAAKNGLL 235 >gi|159045214|ref|YP_001534008.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912974|gb|ABV94407.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 228 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ + LT+++ LQL G +++IA L ++ TV A++ + KL +R Q Sbjct: 148 AEEALARLGLLTKQQARILQLICAGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQ 207 Query: 224 AIAKAIRF 231 A+ A Sbjct: 208 AVLIAQEA 215 >gi|32967994|gb|AAP92509.1| transcriptional regulator [Streptomyces vinaceus] Length = 236 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 5/137 (3%) Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 E + + + L V + Sbjct: 96 AAERDTDELLSAALAAGVHGYVPLSSPREDFDAAIQAVAAGGGFLPTHVTRRLVRNFH-- 153 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + R + L+ERE L L GDG ++ EIA L +S TV +++ KL Sbjct: 154 ---LVPRRTDRPAELELLSEREQQVLLLVGDGRSNREIARTLRVSEATVKSHVSRVLAKL 210 Query: 217 DAVNRIQAIAKAIRFGY 233 + +R+ A R G Sbjct: 211 ELRDRVHAAQLVWRLGL 227 >gi|16760019|ref|NP_455636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142210|ref|NP_805552.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162401|ref|ZP_03348111.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427737|ref|ZP_03360487.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581810|ref|ZP_03363636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213618652|ref|ZP_03372478.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646854|ref|ZP_03376907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864885|ref|ZP_03387004.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828614|ref|ZP_06546439.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|291080868|ref|ZP_06537029.2| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25298760|pir||AG0635 probable regulatory protein STY1179 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502313|emb|CAD08266.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137840|gb|AAO69401.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 208 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L G ++ EIA L +S +TV +L + K+ NR QA+ Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAV 207 >gi|326333266|ref|ZP_08199513.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325948910|gb|EGD41003.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 225 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 4/102 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + ++ + D R+ LT RE L G ++ Sbjct: 124 VHAGHAVVAPSTTRRLLEHVATAPAPDNGRAADIRA----TLTPRELDMLLELATGDSNA 179 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA ++ LS TV ++G KL +R+QA+ A G + Sbjct: 180 EIACRVHLSEATVKTHVGHVLAKLGLRDRVQAVVLAYETGLV 221 >gi|255691480|ref|ZP_05415155.1| transcriptional regulator, LuxR family [Bacteroides finegoldii DSM 17565] gi|260622871|gb|EEX45742.1| transcriptional regulator, LuxR family [Bacteroides finegoldii DSM 17565] Length = 203 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ L++RE + G T++EIAEKL LS+HTV + + + KL + Sbjct: 125 EEEDLENQDALSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAG 184 Query: 224 AIAKAIRFGYI 234 AI + Sbjct: 185 LTIYAIVNKLV 195 >gi|150007891|ref|YP_001302634.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256840150|ref|ZP_05545659.1| transcriptional regulator [Parabacteroides sp. D13] gi|262381608|ref|ZP_06074746.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|149936315|gb|ABR43012.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256739080|gb|EEU52405.1| transcriptional regulator [Parabacteroides sp. D13] gi|262296785|gb|EEY84715.1| transcriptional regulator [Bacteroides sp. 2_1_33B] Length = 109 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 41/74 (55%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L L A LT+RE L L G+ S+EIA KL LS++TVN + + KL+ N Sbjct: 35 LILASTVILAEPQLTKREKEILILIRQGFLSKEIAYKLNLSIYTVNNHRKNILAKLNVDN 94 Query: 221 RIQAIAKAIRFGYI 234 I+AI KA FG + Sbjct: 95 AIEAINKAENFGIL 108 >gi|148271887|ref|YP_001221448.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829817|emb|CAN00738.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAARNLTE 176 G+V+ +E + A G +V+ +F LT Sbjct: 108 AGARGFVLKDAEPEEFIQAMRALAEGRAALDGVTTRRVMAEFTRRRAASAVHPGTEVLTP 167 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L GDG +++EI +L + TV ++L KL +R+Q + R G + Sbjct: 168 REQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL 225 >gi|16759521|ref|NP_455138.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142706|ref|NP_806048.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052771|ref|ZP_03345649.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425256|ref|ZP_03358006.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582337|ref|ZP_03364163.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622215|ref|ZP_03374998.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647052|ref|ZP_03377105.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865277|ref|ZP_03387396.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823975|ref|ZP_06543574.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298756|pir||AE0570 probable transcription regulator (FimXZ protein) fimZ [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501813|emb|CAD05031.1| probable transcriptional regulator (FimXZ protein) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138337|gb|AAO69908.1| probable transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 210 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I A Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208 Query: 233 YI 234 + Sbjct: 209 LL 210 >gi|114562693|ref|YP_750206.1| transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333986|gb|ABI71368.1| transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 210 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 31/58 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE LQ G T+ +IA +L +S T+ +L A K+ +R QAIA A Sbjct: 144 SEQLTIREREVLQTLLSGSTNLDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 201 >gi|317473872|ref|ZP_07933152.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316909949|gb|EFV31623.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 223 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E S L+ G T++EIA + LS HT+N++ + KL N +A A++ Sbjct: 154 DLLTPAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKA 213 Query: 232 GYI 234 G + Sbjct: 214 GIV 216 >gi|301631649|ref|XP_002944911.1| PREDICTED: oxygen regulatory protein nreC-like [Xenopus (Silurana) tropicalis] Length = 241 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 20/177 (11%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128 P+ I + +L +L + L Sbjct: 64 ARACLADQPLALALIDLHLPDGNGCELIAQLRADDPGLGILVVSAWSSEDAILGALRAGA 123 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN--------LTER 177 GYV+ + + + V G + LEL +++ + L+ R Sbjct: 124 TGYVLKERDDVEVQLSVRSVLRGGAPIDPFIARRILELLPTAAASPASTAAPLQGVLSVR 183 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L DG ++ EIAE+L LS +TV +++ KL +R+ A+ +A G + Sbjct: 184 EGQILRLVADGLSNREIAEQLFLSRYTVESHVKRVYRKLAVSSRMNAVREARSRGLL 240 >gi|260655833|ref|ZP_05861302.1| response regulator GacA [Jonquetella anthropi E3_33 E1] gi|260629449|gb|EEX47643.1| response regulator GacA [Jonquetella anthropi E3_33 E1] Length = 217 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 12/197 (6%) Query: 46 RRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS 105 + + + + + + + L + + E+ E+ Sbjct: 22 ASRPDLQVVGSAPDGESGLAVVREQRPDVAVLDMTMPSIGGVECARRLVESFPETK---- 77 Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDF 160 + I+ +R+G ++ L+ A + E A G ++ D+ Sbjct: 78 ILALSMHNDLRFISELLRIGAKGYLLKDCATDELLTAVRTVAEGRLYLAGGVVQLLVEDY 137 Query: 161 LELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L L + + + L+ERE S L L G TS+ I ++LG+S +TV+ + KL Sbjct: 138 LRLKRAVHDGPARSMVLSEREKSVLALMAQGLTSKAIGDELGISKNTVDTHRRRMMDKLG 197 Query: 218 AVNRIQAIAKAIRFGYI 234 + + + A R + Sbjct: 198 CNSVAELLRHAYREELL 214 >gi|221639537|ref|YP_002525799.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221160318|gb|ACM01298.1| Transcriptional regulator, LuxR family [Rhodobacter sphaeroides KD131] Length = 206 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 27/209 (12%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L ++ I F + P + L+ + ++ Sbjct: 9 LSDMKEAFLQIAQA----GF-YVALRLGFYSPEDE-----LNTFPEQFVELYTARGLALQ 58 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHKNGY 131 D + + + W ++ + + + G + R K + Sbjct: 59 DPLMRWTFTNHGALRWSAVDQPDPLGVIARY-----RQYGMRYGATICLAGRGPVPKKSF 113 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 IF ++ I++ + + ++LTE + L++ G Sbjct: 114 GIFARADREFSDAEIVDLRELLTTLHVN----------EPQSLTESQVEVLRMLSTGMRY 163 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +++A LG+S V A L A +++A Sbjct: 164 KQMAYALGISESAVKARLKGAAQRMNAKT 192 >gi|254440333|ref|ZP_05053827.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] gi|198255779|gb|EDY80093.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] Length = 220 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LTERE L+ +G +++EIA L + TV ++ + K+ NR QA Sbjct: 138 NPLADKLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALI 197 Query: 228 AIRF 231 Sbjct: 198 GREA 201 >gi|297191263|ref|ZP_06908661.1| two component transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718452|gb|EDY62360.1| two component transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K+ LT RE + L G ++EIA ++ +S TV + A K+ A +R Sbjct: 147 IDKELLRRFSALTPRERDVVVLVASGLGNDEIAAQMSVSPFTVKTHAVRAMTKVGARDRA 206 Query: 223 QAIAKAIRFGY 233 Q ++ A R G Sbjct: 207 QLVSFAFRAGL 217 >gi|149915179|ref|ZP_01903707.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b] gi|149810900|gb|EDM70739.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b] Length = 201 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + +S LT RE L+ +G ++EIA +L + TV ++ + + KL A NR Sbjct: 129 LAEAEASPLDVALTPRELDVLKGLTEGKANKEIARELDIQEVTVKLHVKTLSRKLQARNR 188 Query: 222 IQAIAKAIRFGYI 234 A G + Sbjct: 189 THAAMLGRDLGLV 201 >gi|90426293|ref|YP_534663.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108307|gb|ABD90344.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 223 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|311067076|ref|YP_003971999.1| two-component hybrid sensor and regulator [Bacillus atrophaeus 1942] gi|310867593|gb|ADP31068.1| two-component hybrid sensor and regulator [Bacillus atrophaeus 1942] Length = 596 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G + IA +L LS TV Y + KL NR +A+ KA G Sbjct: 534 GLTKRELEVLNLLSQGIRYKTIASELYLSNGTVRNYASTLYDKLGVKNREEAVQKARDTG 593 Query: 233 YI 234 + Sbjct: 594 LL 595 >gi|307944438|ref|ZP_07659778.1| oxygen regulatory protein NreC [Roseibium sp. TrichSKD4] gi|307772187|gb|EFO31408.1| oxygen regulatory protein NreC [Roseibium sp. TrichSKD4] Length = 216 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 156 VITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 I L K + LTERE L G ++E+A LG+SV TV ++ + Sbjct: 133 AIGPTLVGAAKSAPVDDPYGLTEREKEVLAAIAKGQPNKEVAANLGISVRTVESHRLNLR 192 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 K+ N Q A G + Sbjct: 193 EKVGCKNAAQLYKVAQELGLL 213 >gi|298387299|ref|ZP_06996852.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14] gi|298259968|gb|EFI02839.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14] Length = 203 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 148 EAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + ++ L ++ L++RE + G T++EIAE L LS+HTV Sbjct: 108 DLDILSKKIHGLLNLASEEEELDNQETLSQREKEIVICVVKGMTNKEIAENLFLSIHTVI 167 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + + KL + AI + Sbjct: 168 THRRNISKKLQIHSAAGLTIYAIVNKLV 195 >gi|262365668|gb|ACY62225.1| GerR-family transcriptional regulatory protein [Yersinia pestis D182038] Length = 160 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 11/154 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLAN-- 143 I ES L RL + F I + G + ++ A Sbjct: 4 IDISMPDESGLSLLKRLRQQIPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCDPAALV 63 Query: 144 EVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + +G + L ++ S LT RE QL G + + +AE+L L Sbjct: 64 QALRTVNGGGLYLCTDALRALRQMPQQPSKLTILTPREKEIFQLLVKGISVKALAEQLSL 123 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV+ + + KL+ I+ + A++ + Sbjct: 124 SHKTVHVHRANILSKLNCETTIELVHFALQHQLL 157 >gi|229031002|ref|ZP_04187018.1| Response regulator [Bacillus cereus AH1271] gi|228730349|gb|EEL81313.1| Response regulator [Bacillus cereus AH1271] Length = 566 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ +G + IA KL LS T+ Y + KL NR +AI A Sbjct: 505 GLTKREMEVLEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNREEAIKMARTEN 564 Query: 233 YI 234 + Sbjct: 565 IL 566 >gi|297563788|ref|YP_003682761.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848237|gb|ADH70255.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 232 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + + LT RE ++ G T+ E+A +L ++V TV +L S KL Sbjct: 154 LLRHFAAAPRSAPGDGGLTVRELDIVRAVARGLTNTEVAGELFVTVSTVKTHLASVQAKL 213 Query: 217 DAVNRIQAIAKAIRFG 232 A NR++ A A R G Sbjct: 214 GARNRVEVAAWAYRNG 229 >gi|261341663|ref|ZP_05969521.1| hypothetical protein ENTCAN_08132 [Enterobacter cancerogenus ATCC 35316] gi|288316021|gb|EFC54959.1| transcriptional regulatory protein UhpA [Enterobacter cancerogenus ATCC 35316] Length = 197 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|167908280|ref|ZP_02495485.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] Length = 78 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ + LT +E L+L G +++EIA + + TV +L + KLDA +R A+ Sbjct: 6 PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 65 Query: 226 AKAIRFGYI 234 +A+ G + Sbjct: 66 RRALVLGLL 74 >gi|124008987|ref|ZP_01693672.1| DNA-binding response regulator, LuxR family, putative [Microscilla marina ATCC 23134] gi|123985413|gb|EAY25321.1| DNA-binding response regulator, LuxR family, putative [Microscilla marina ATCC 23134] Length = 222 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L + YT++EIA+KL +S TV + + K A N + A++ + Sbjct: 155 TDREMEVLRLLCEQYTAQEIADKLFISRRTVEGHKDNLFAKTGARNLAGLVIYALQNQLV 214 >gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 242 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 44/100 (44%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + + ++TD L ++ S N T RE S LQL +G ++EI Sbjct: 142 AARFADIDVSKMAKQITEIKSMLTDQNPLNQENSIDIPNFTPREASVLQLVAEGLMNKEI 201 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A KL S+ V Y+ +K +R + + A+ + Sbjct: 202 ARKLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHLV 241 >gi|116696371|ref|YP_841947.1| response regulator [Ralstonia eutropha H16] gi|113530870|emb|CAJ97217.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 239 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 24/194 (12%) Query: 65 PNILIETYGDDFLFHF-NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 ++ P + S +L L + Sbjct: 45 YAAGALSFAGTIAQACALVDQGPFDMALVDTSLPDGSGIELIRCLRERAPDLPIVVIASP 104 Query: 124 LG---------FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA 171 GY++ + + L + G + L +++ A Sbjct: 105 GTDTEIVGALIAGATGYLLKERDDIELTVCLRGALRGGTPIDPSIAKRLLTTLVPKAAPA 164 Query: 172 RN-----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+ RET L G T+ EIA+ L LS T+ +++ + KL Sbjct: 165 ETRLSPTGSVKPLLSARETEILVFINKGSTNREIADALSLSRLTIESHVKNIYKKLAVKT 224 Query: 221 RIQAIAKAIRFGYI 234 R QAI +A +G + Sbjct: 225 RTQAIFEARAYGVL 238 >gi|325002788|ref|ZP_08123900.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 225 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLG 199 + A ++IT+F L T RE L L G G+T+ EIA +L Sbjct: 127 AGEALLAPSVTRRLITEFARHGPAAPPGTDRLAVLTGREREVLALVGRGHTNGEIAAQLV 186 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S T ++G KL A +R+Q + A G + Sbjct: 187 ISPATARTHVGRLLTKLGARDRVQLVVIAHETGLV 221 >gi|325972442|ref|YP_004248633.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324027680|gb|ADY14439.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 314 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L G T++EIA +LG+S TV ++ + K+ +RI+ Sbjct: 258 LTAREQEMASLIAQGLTNKEIAFRLGISEATVRTHIYNLFQKVGVQSRIEL 308 >gi|311103688|ref|YP_003976541.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758377|gb|ADP13826.1| bacterial regulatory protein, LuxR family protein 2 [Achromobacter xylosoxidans A8] Length = 83 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 40/78 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L + A + L+ER+ SCL A G TS E A LG+S TVN +L +A KL Sbjct: 1 MGSALNPSSSPAQAIKPLSERQASCLHWAALGKTSWETARILGVSESTVNFHLCNACEKL 60 Query: 217 DAVNRIQAIAKAIRFGYI 234 R A+ A+R G I Sbjct: 61 GVRGRRAAVVAALRLGLI 78 >gi|325675273|ref|ZP_08154958.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325553979|gb|EGD23656.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 771 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 6/122 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSA 170 G+ P + A + + + D L A Sbjct: 647 GVVIPALRSNRDEARTLCEGALGARAFDTAVRRGCELTLDEVVDFAVADRLPEAAPTERA 706 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE +L G T++ IAEKL +S TV ++ KL +R Q A + Sbjct: 707 ASDLTPREQEVAELVAQGLTNKAIAEKLVISQRTVQGHVEHVLAKLGFNSRTQIAAWVVE 766 Query: 231 FG 232 G Sbjct: 767 RG 768 >gi|296104643|ref|YP_003614789.1| two component LuxR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059102|gb|ADF63840.1| two component LuxR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 210 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NLT R+ L + G ++ IA +L +S TV ++ + K+ +R++AI Sbjct: 147 NLTPRQIDVLNMIMRGLPNKRIAAQLSISEPTVKEHISNILKKIGVNSRVEAI 199 >gi|291002981|ref|ZP_06560954.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 213 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 40/79 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + +L ++++ R LT RE L+L G+G T+ EI++++ L+ TV Y+ Sbjct: 128 EAMLAWLRREQEQADPLRELTAREREVLELIGEGLTNREISQRMFLAEKTVKNYVSQMLS 187 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL +R +A A Sbjct: 188 KLAMRHRSEAAVLATELRL 206 >gi|297562533|ref|YP_003681507.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846981|gb|ADH69001.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 222 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G ++I D+ + LTERE + L G G ++EEIA L LS T Sbjct: 130 GITRRLIADYARRPPSAPDPSVRLNGLTEREREVVALVGGGLSNEEIAAHLVLSPATAKT 189 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A VKL +R Q + A + Sbjct: 190 HVSRAMVKLGVRDRAQLVVIAYETALV 216 >gi|172036050|ref|YP_001802551.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171697504|gb|ACB50485.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 224 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ L L G ++ EI ++L LS T+ Y+ S K D NR + + A+ Sbjct: 163 LTRRESEVLDLLTMGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDHHL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|150397367|ref|YP_001327834.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150028882|gb|ABR60999.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 247 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 67/240 (27%), Gaps = 41/240 (17%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD----SGDIPNILIET 71 + L + + ++ +++ + +D + + Sbjct: 8 DTFRTL--MSTLMTFDYVVVFAYRG------KERPLDLYSTFDAEDHVLFVTLYQAGPYL 59 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA--GIAFPV------- 122 D F H P +W+ + S + G PV Sbjct: 60 L-DPFY-HAARAPKPGVWRMRELAPDRFFSSEYYRTYYVQTGLAEEVGFFVPVSEQVTVV 117 Query: 123 -----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKK-----RSSA 170 R G F + H + L ++ Sbjct: 118 LSLMRREATGVFGAAEFALLRKAEPLVAALVRHHWAELDRRFDTALARTERGRRKSVHPP 177 Query: 171 AR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A NLTERE + ++L G++SE I KLG+S TV + + KL ++ Q Sbjct: 178 ADGVWRHLNLTEREAAIIELVLQGHSSESIGLKLGISTGTVKVHRRNVYRKLGISSQTQL 237 >gi|16763929|ref|NP_459544.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414302|ref|YP_151377.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161615245|ref|YP_001589210.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550921|ref|ZP_02344677.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990544|ref|ZP_02571644.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168818830|ref|ZP_02830830.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197251803|ref|YP_002145532.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263357|ref|ZP_03163431.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363222|ref|YP_002142859.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198246048|ref|YP_002214503.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391104|ref|ZP_03217715.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205351850|ref|YP_002225651.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856027|ref|YP_002242678.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|120173|sp|P26319|FIMZ_SALTY RecName: Full=Fimbriae Z protein gi|153968|gb|AAA27065.1| fimbriae Z [Salmonella enterica subsp. enterica serovar Typhimurium] gi|349137|gb|AAA75422.1| FimZ [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419060|gb|AAL19503.1| fimbrial protein Z [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128559|gb|AAV78065.1| probable transcriptional regulator (FimXZ protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161364609|gb|ABX68377.1| hypothetical protein SPAB_03014 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197094699|emb|CAR60229.1| probable transcriptional regulator (FimXZ protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215506|gb|ACH52903.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241612|gb|EDY24232.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197940564|gb|ACH77897.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603549|gb|EDZ02095.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205271631|emb|CAR36457.1| probable transcriptional regulator (FimXZ protein) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324155|gb|EDZ11994.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330873|gb|EDZ17637.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205344205|gb|EDZ30969.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206707830|emb|CAR32115.1| probable transcriptional regulator (FimXZ protein) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245828|emb|CBG23626.1| probable transcriptional regulator (FimXZ protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992273|gb|ACY87158.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157157|emb|CBW16641.1| probable transcriptional regulator (FimXZ protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911582|dbj|BAJ35556.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084822|emb|CBY94612.1| Transcriptional regulatory protein degU Protease production enhancer protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226131|gb|EFX51182.1| Transcriptional regulator of fimbriae expression FimZ LuxR/UhpA family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332987498|gb|AEF06481.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 210 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I A Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208 Query: 233 YI 234 + Sbjct: 209 LL 210 >gi|148264823|ref|YP_001231529.1| two component LuxR family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398323|gb|ABQ26956.1| two component transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 214 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 4/131 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL 163 + LL + + G +E L+ A + +++ Sbjct: 81 VLSMLLDRNCVLESLEAGARGYLAKDCAAEELVAAIRTVFAGKPYFCAGATEIMIKGFAP 140 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L+L +GY ++EIA LG+S+ + + + KL + Q Sbjct: 141 GSASQQIAPVLTKREREVLKLTAEGYNTKEIAFTLGVSIKMIEIHRMNIRKKLGLKSIAQ 200 Query: 224 AIAKAIRFGYI 234 A+R G I Sbjct: 201 LATYAVRIGLI 211 >gi|330467590|ref|YP_004405333.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810561|gb|AEB44733.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 239 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + + L+ERE L LA + ++ +IA +L +S TV ++ KL+AV+R Sbjct: 146 RGGSRAAPHSVRLSEREHDVLSLAAEALSNSQIARRLYISEGTVKRHMRHVFKKLNAVSR 205 Query: 222 IQAIAKAIRFGYI 234 I A+ KAI I Sbjct: 206 IDAVNKAISAALI 218 >gi|323498768|ref|ZP_08103754.1| response regulator [Vibrio sinaloensis DSM 21326] gi|323316130|gb|EGA69155.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 211 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ + Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207 >gi|317055507|ref|YP_004103974.1| LuxR family two component transcriptional regulator [Ruminococcus albus 7] gi|315447776|gb|ADU21340.1| two component transcriptional regulator, LuxR family [Ruminococcus albus 7] Length = 209 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +E+E L+L +G +++EI+ +L LS TV Y+ S KL +R Q Sbjct: 149 SEKEKEILELVAEGKSNKEISAELFLSEGTVRNYISSLLDKLSLRDRTQLAVF 201 >gi|296126426|ref|YP_003633678.1| LuxR family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296018242|gb|ADG71479.1| transcriptional regulator, LuxR family [Brachyspira murdochii DSM 12563] Length = 320 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A NLT RE L DG T++E++ L +S++TVN ++ + K NR++ + K Sbjct: 261 AVNLTRREREILSYLLDGKTNKEVSLILDISLNTVNNHVANIYEKSGVKNRVELVNK 317 >gi|254504710|ref|ZP_05116861.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222440781|gb|EEE47460.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 248 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 29/58 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L G ++++I E L LS TVN +L VKL NR A +A Sbjct: 186 QLTQREAEVLIWIAKGKSNKDIGEILNLSPRTVNKHLEQIFVKLGVENRASAAVRAAE 243 >gi|290475594|ref|YP_003468482.1| response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression [Xenorhabdus bovienii SS-2004] gi|289174915|emb|CBJ81716.1| response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression [Xenorhabdus bovienii SS-2004] Length = 211 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +L LT+RE L+ +G T++EIA+ L +S TV + + KL + Sbjct: 133 QYLSTRHLYIDPLSKLTKRELDVLKEISEGMTNKEIADFLFISEETVKVHTRNLLKKLKS 192 Query: 219 VNRIQAIAKAIRF 231 +R++A +R Sbjct: 193 RSRLEATIIYLRH 205 >gi|262165666|ref|ZP_06033403.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223] gi|262025382|gb|EEY44050.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223] Length = 222 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 16/124 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------- 169 + + G + + A I+ + D L K S Sbjct: 91 VLQTLAYGAVGYVAKSCARQQMGEAFAQILRGD---VYLPADILRENVKTSPNHFLRNQT 147 Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT ++ LQ G +++IA L +S TV +++ + KL NRIQA Sbjct: 148 GFSAETLQTLTRKQLQVLQFMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQA 207 Query: 225 IAKA 228 + A Sbjct: 208 VLGA 211 >gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R S++ LTERE L+ G T+++IA+ L LS TVN +L VKL R Sbjct: 149 AAAYTRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETR 208 Query: 222 IQAIAKAI 229 A + A+ Sbjct: 209 TAATSVAL 216 >gi|196232039|ref|ZP_03130894.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223761|gb|EDY18276.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 220 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 1/128 (0%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 ++ L A + P+ ++ + + + ++ Sbjct: 90 TLEAARALGVQAFLLKPLASKEQLRAAIVIATTICDRQRADAERIDTLSTSLESTRVKTM 149 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LT RET L L +G + EI +LGLS TV ++ KL +R A Sbjct: 150 PRALG-SYGLTRRETEVLHLLAEGKANAEIGVELGLSPRTVEKHVEHILDKLGVKSRTAA 208 Query: 225 IAKAIRFG 232 G Sbjct: 209 TRLVADAG 216 >gi|254386960|ref|ZP_05002242.1| two-component regulator [Streptomyces sp. Mg1] gi|194345787|gb|EDX26753.1| two-component regulator [Streptomyces sp. Mg1] Length = 220 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + AR +TERE L+L +G+TS+EI + L +S TV + + KL +R Sbjct: 146 RARTGGALPARPITEREEEILKLVAEGHTSKEIGDFLVISAKTVERHRANLLQKLGLRDR 205 Query: 222 IQAIAKAIRFGYI 234 ++ AIR G I Sbjct: 206 LELTRYAIRVGLI 218 >gi|194291238|ref|YP_002007145.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193225073|emb|CAQ71084.1| putative response regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 228 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCL 182 GYV+ + L + G + + ++ + LT RE L Sbjct: 113 RAGARGYVLKDAPADELIAAIRSVLAGRVFYSARIARGIAEQSPAAGPLDALTPRERDIL 172 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + G G ++EIA +LG+SV TV + + KL R + A+ Sbjct: 173 RGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVE 220 >gi|29827823|ref|NP_822457.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29604924|dbj|BAC68992.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 226 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + + LT+RE + L L +G ++ +I ++ LS TV ++ + KL R+QA Sbjct: 148 EPAARSLAALTDRERAVLVLIAEGLSNADIGTRMHLSTGTVKDHVSAILTKLKVDGRVQA 207 Query: 225 IAKAIRFGYI 234 A R G + Sbjct: 208 ALLAERAGLL 217 >gi|88797548|ref|ZP_01113137.1| two-component system, response regulator [Reinekea sp. MED297] gi|88779720|gb|EAR10906.1| two-component system, response regulator [Reinekea sp. MED297] Length = 218 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 36/67 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LT+++ L+ DG +++IA L +S TV A++ + KL+ +NR QA Sbjct: 144 EDIARRINELTDQQLRVLRHLQDGRLNKQIAYDLDISEATVKAHVTAIFRKLNVLNRTQA 203 Query: 225 IAKAIRF 231 + A + Sbjct: 204 VILANKL 210 >gi|158315625|ref|YP_001508133.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111030|gb|ABW13227.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 217 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 5/120 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLEL--FKKRSSAARN 173 + + GY++ ++ L + AHG +V L L R Sbjct: 92 SVFAAMCAGARGYLLKGADQDELRRAITAVAHGEAIFGSRVAARVLALLAHPPREVPFPQ 151 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G + IA L +S TV ++ + KL +R +AI +A G Sbjct: 152 LTDRERQVLDELARGRNNASIARVLNVSTRTVANHVSTIFAKLQLADRAEAIVRAREAGL 211 >gi|311277366|ref|YP_003939597.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308746561|gb|ADO46313.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 197 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 6/118 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD---FLELF---KKRSS 169 A I V + L+ + A + + +L K + Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVRAVATGGCYLTPDIASKLAAG 133 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE + G +EIA LGLS TV+ + + KL N ++ + Sbjct: 134 RQDPLTRRERQVAEKLAQGMAVKEIAAVLGLSPKTVHVHRANLMEKLGVSNDVELARR 191 >gi|295134050|ref|YP_003584726.1| two-component response regulator [Zunongwangia profunda SM-A87] gi|294982065|gb|ADF52530.1| two-component response regulator [Zunongwangia profunda SM-A87] Length = 214 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 143 NEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++++ + + + L R ++ LT+RE LQL +T++EIA+ L LS Sbjct: 122 RQILLGENYFSTHIQSILIQSLTNSRKASEIRLTQREKEVLQLIAKEHTTQEIADMLFLS 181 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 HT+ +Y + KL+ N AI + Sbjct: 182 KHTIESYRKNLINKLEVRNLAGLTRYAIEHNMV 214 >gi|254461366|ref|ZP_05074782.1| DNA-binding response regulator, LuxR family [Rhodobacterales bacterium HTCC2083] gi|255262610|ref|ZP_05341952.1| DNA-binding response regulator, LuxR family [Thalassiobium sp. R2A62] gi|206677955|gb|EDZ42442.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium HTCC2083] gi|255104945|gb|EET47619.1| DNA-binding response regulator, LuxR family [Thalassiobium sp. R2A62] Length = 216 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 48/99 (48%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G FT + + A A Q++ FL++ + +S LT+RE + L+ G Sbjct: 104 AGAAGFTPRNGPVEGLLDTCAAVAAGQMVFPFLDVRELQSDPIHQLTKREKALLEALSRG 163 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ ++A + +S +TV +L + KL +R QA+A Sbjct: 164 LSNRQLAAEFEISANTVKFHLSNLYEKLSVTSRTQAVAF 202 >gi|254410670|ref|ZP_05024449.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182876|gb|EDX77861.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 216 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G ++ EI KL LS T+ Y+ S K + NR + + A+ Sbjct: 155 LTQREQQVLDLLTTGLSNSEIGNKLHLSPRTIEKYVSSLLRKTETSNRAEIVRFALENHL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|124005623|ref|ZP_01690462.1| DNA-binding response regulator, LuxR family [Microscilla marina ATCC 23134] gi|123988691|gb|EAY28297.1| DNA-binding response regulator, LuxR family [Microscilla marina ATCC 23134] Length = 222 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T RE L+L YT++EIA++L +S+HTV + K N + + +A++ Sbjct: 160 TPREQEVLELILKEYTTQEIADRLFVSIHTVETHRKKLFNKFGVKNVVGLVVRALQM 216 >gi|118591588|ref|ZP_01548985.1| probable transcriptional regulator protein, LuxR family protein [Stappia aggregata IAM 12614] gi|118435916|gb|EAV42560.1| probable transcriptional regulator protein, LuxR family protein [Stappia aggregata IAM 12614] Length = 239 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A + + + LT+RET L L +GY ++ IA KL LS HT+ ++ Sbjct: 151 AGAAPALQLRKPHGRTKNQFSKLTKRETEVLCLISEGYQNKNIANKLSLSEHTIKLHIHH 210 Query: 212 ATVKLDAVNRIQAIAK 227 KL NR +A A Sbjct: 211 IISKLGVSNRTEAAAI 226 >gi|73538297|ref|YP_298664.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72121634|gb|AAZ63820.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 232 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 1/114 (0%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERET 179 P NGYV T E + V G D + +L+++E Sbjct: 116 PRARQAGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRADGVDETRRLGSLSDKEL 175 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +Q+ G ++++I E L +S TV+ + KL A + + I A R Sbjct: 176 VIMQMLAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVIDFARRHHI 229 >gi|332306859|ref|YP_004434710.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174188|gb|AEE23442.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 214 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + L+ERE + G +IA+ L +S TVN + KL+ Sbjct: 137 ALDFTDGNPFECLSERELEITLMLTKGSKVPDIAKFLNISAKTVNTHRYRMFEKLNVSTD 196 Query: 222 IQAIAKAIRFGYI 234 ++ A+R I Sbjct: 197 VELTHLALRHKLI 209 >gi|300783580|ref|YP_003763871.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793094|gb|ADJ43469.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 427 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 30/69 (43%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 A L RE L G + +IAE+L LS HTV ++ + KLD +R Sbjct: 349 AEPPELRALDRLNPRELEVLSGISQGLRNRQIAEQLQLSEHTVKFHVRNILDKLDVSSRG 408 Query: 223 QAIAKAIRF 231 +A A A Sbjct: 409 EAAALARDL 417 >gi|299134770|ref|ZP_07027962.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298590580|gb|EFI50783.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 210 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 48/160 (30%), Gaps = 12/160 (7%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTS 136 P + S L + + I + GYV S Sbjct: 46 PCDVVLLDLSMPGRSGIALLTDVVAKIGSGRVIVLSMHDEHQYVIESLKAGAAGYVTKNS 105 Query: 137 EFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 L + A+ + R LT RE L DG + Sbjct: 106 ASQQLIQAIRKVANDEMFISATAAQSAALKVQPEDEPHRRLTPREREIFDLLVDGRKISD 165 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IA KL LSV TV+ + + +K DA + + A+R G Sbjct: 166 IARKLDLSVKTVSTHKTNILLKFDAATVVDLVHYAMRHGL 205 >gi|196230839|ref|ZP_03129700.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225180|gb|EDY19689.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 221 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + LE+F K + AR LT RE L++ G T +E A L +S +T + Y+ Sbjct: 132 INPTIARRVLEMFSKANPPARDYGLTPREQEILEVLVQGKTIKEAAAALKISYYTADEYI 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL +R A+AKA+ G + Sbjct: 192 RSVYDKLQVRSRSSAVAKAVSEGLV 216 >gi|90420412|ref|ZP_01228319.1| two-component response regulator, possible glycerol metabolism activator [Aurantimonas manganoxydans SI85-9A1] gi|90335140|gb|EAS48893.1| two-component response regulator, possible glycerol metabolism activator [Aurantimonas manganoxydans SI85-9A1] Length = 227 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 9/141 (6%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + SV + L +G++ +S F + I A A + Sbjct: 81 RADHPSVPIAIVSGSEDAPIVARALDLGASGFIPKSSGFAEI--REAILALLAGEVFLPP 138 Query: 160 FLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + L +R R LT ++T L + G G +++IA +LG+S T+ A++ + Sbjct: 139 DISLESERDPEVTELIQRIRTLTPQQTRVLTMLGRGLLNKQIAYELGISEATIKAHVSAV 198 Query: 213 TVKLDAVNRIQAIAKAIRFGY 233 +KL +R QA+ + R G Sbjct: 199 LLKLGVDSRTQAVIRLSRLGL 219 >gi|86750958|ref|YP_487454.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573986|gb|ABD08543.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 209 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L G T++E +LG+S T+ + + KL A N + Sbjct: 144 PGKEPLTLREREVLELFASGNTNKEAGRQLGISPRTIEYHRANIMKKLGARNATDLVRI 202 >gi|32170705|dbj|BAC78370.1| putative two-component system response regulator [Streptomyces sp. WA46] Length = 222 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + ++ V + E + LT+RE L G G+T+ EIA Sbjct: 121 GDAVIAPALTRRLLDEFAQYVPSHRTEPSED--PRLTALTDREREILVAIGKGWTNGEIA 178 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + LS TV ++G K+ A +RIQA+ A G Sbjct: 179 ARFVLSESTVKTHVGRVLTKIGARDRIQAVIFAYDHGL 216 >gi|300785449|ref|YP_003765740.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794963|gb|ADJ45338.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 234 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++T+RE L L +G T+ EIA +L ++ T ++G+ KL+A +R+ + Sbjct: 164 PDPLASITDRERQVLALVAEGLTNAEIARRLHIAPGTAKTHVGNLLTKLNARDRVHLVIH 223 Query: 228 AIRF 231 A R Sbjct: 224 AYRA 227 >gi|312196796|ref|YP_004016857.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228132|gb|ADP80987.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 221 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L LT++E L L +G T+ +IA ++ L+ TV Y+ S KL + Sbjct: 149 LRQGPAEDERLAGLTDQERRILALIAEGLTNRQIANRMYLAEKTVKNYVSSMLSKLGLES 208 Query: 221 RIQAIAKAIRFG 232 R QA A + G Sbjct: 209 RTQAAVFATKLG 220 >gi|229542625|ref|ZP_04431685.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229327045|gb|EEN92720.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 218 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 163 LFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L + +L TERE + L G++++EIA+ L +S TV Y+ S K Sbjct: 138 LSGREPEPKIDLKKFTEREREIMSLIAKGFSNKEIAKTLYISEGTVANYITSIFGKTGLE 197 Query: 220 NRIQAIAK 227 +R Q Sbjct: 198 HRTQIAVY 205 >gi|254444769|ref|ZP_05058245.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198259077|gb|EDY83385.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 211 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET LQ+ G+GY+S+EIA LSV T++A+ + KL+ A++ Sbjct: 148 LTPRETDVLQMVGEGYSSKEIARSFNLSVRTIDAHRSNIMRKLNLRGATDMTRLAVKLKL 207 Query: 234 I 234 + Sbjct: 208 V 208 >gi|189468407|ref|ZP_03017192.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM 17393] gi|189436671|gb|EDV05656.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM 17393] Length = 209 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ RE L L G ++EIA+KL +S+ TV ++ + T KL + A+ Sbjct: 142 HDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVAGLTIYAVMH 201 Query: 232 GYI 234 GY+ Sbjct: 202 GYV 204 >gi|52142219|ref|YP_084610.1| response regulator [Bacillus cereus E33L] gi|51975688|gb|AAU17238.1| response regulator [Bacillus cereus E33L] Length = 597 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ +G + IA KL LS T+ Y + KL NR +AI A Sbjct: 536 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTEN 595 Query: 233 YI 234 + Sbjct: 596 IL 597 >gi|94310139|ref|YP_583349.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353991|gb|ABF08080.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 210 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTER 177 P+ + K G + F E +E+ + TD ++R++ LT R Sbjct: 96 VPMAVSTMKRGAIDFI-EKPFDESELRSLVERMLQKARTDHSAAREQRAAKDLLSKLTTR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 EQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 208 >gi|322433940|ref|YP_004216152.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321161667|gb|ADW67372.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 190 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + +A ++ + D + S+ A LT+RE LQ AG+G +S EIA + Sbjct: 94 DRPASELADAVRRVHRGLRVVDPALATEAWSAEADPLTDRERQILQRAGEGRSSGEIAGE 153 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV YL A KL A NR+ A A G++ Sbjct: 154 LRLSEGTVRNYLSEAISKLGAANRVDAARIARAKGWL 190 >gi|172039771|ref|YP_001799485.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851075|emb|CAQ04051.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 248 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE L+L GYT +E+AE+L +SV TV ++ + K NR Sbjct: 184 PNLDELTPREHEVLRLLARGYTYKEMAERLFISVKTVETHVSNILRKTQQTNR 236 >gi|170767648|ref|ZP_02902101.1| fimbriae Z protein [Escherichia albertii TW07627] gi|170123136|gb|EDS92067.1| fimbriae Z protein [Escherichia albertii TW07627] Length = 210 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L+ +G +++EIA +L LS TV+A+ + KL + ++ I A + Sbjct: 149 PLTNRELTILRYLVNGLSNKEIAGQLLLSNKTVSAHKSNIYSKLGLHSIVELINYARLYE 208 Query: 233 YI 234 I Sbjct: 209 LI 210 >gi|134100027|ref|YP_001105688.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133912650|emb|CAM02763.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 217 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 40/79 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + +L ++++ R LT RE L+L G+G T+ EI++++ L+ TV Y+ Sbjct: 132 EAMLAWLRREQEQADPLRELTAREREVLELIGEGLTNREISQRMFLAEKTVKNYVSQMLS 191 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL +R +A A Sbjct: 192 KLAMRHRSEAAVLATELRL 210 >gi|87199258|ref|YP_496515.1| two component LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134939|gb|ABD25681.1| two component transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 208 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L L L RE L G + +I +LG+ TV YL + KL N Sbjct: 135 LSLRPDSQGPLAKLNPRERKIAALVARGMRNRDIGAELGIGEGTVKVYLHTMYQKLGIDN 194 Query: 221 RIQAIAKAI 229 R + A+ Sbjct: 195 RTELALLAV 203 >gi|307326345|ref|ZP_07605541.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888008|gb|EFN18998.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 228 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 3/96 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAE 196 + L + R AA LT RE +L G T++EI Sbjct: 128 EAVRSAARGGALVSPAITVRLLRQWASRPGAATGANPLTGRELDVARLVAVGRTNQEICA 187 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L LS+ TV +L + KL NR++ A A G Sbjct: 188 ELHLSLSTVKTHLSNIQTKLAVRNRVEIAAWAWDTG 223 >gi|298247840|ref|ZP_06971645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550499|gb|EFH84365.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1029 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 H + A+ +L+ +E L+L G ++ +IA +L +SV+T Sbjct: 940 ALHLLNAFAPSSPTSTQPSTPGASLLLESLSPQEERVLRLLASGNSNADIARELVVSVNT 999 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L S KL+ NR++A A + G + Sbjct: 1000 IRTQLQSVYRKLNVSNRVEASNTARQLGLV 1029 >gi|171317077|ref|ZP_02906281.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171097778|gb|EDT42602.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 204 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 5/139 (3%) Query: 101 SGQLSVRLEGGLLPFAGIA---FPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 +L F+G + F +R NGYV + + + + G Sbjct: 66 QRVRIKDATVKILVFSGYSAELFALRCHAAGANGYVNKSEDVTHVLSAANAVLAGFHCFP 125 Query: 157 IT-DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + +A L+ERE + L+ G +++EI + L LS T++ + + K Sbjct: 126 LDINAMASGSGPHAAFAMLSERELTVLRYLAKGLSNKEIGDSLSLSNKTISTHKANILAK 185 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L N + A A I Sbjct: 186 LGFTNVVDLAAFAKAHHLI 204 >gi|134098494|ref|YP_001104155.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003289|ref|ZP_06561262.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911117|emb|CAM01230.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 235 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 17/139 (12%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACY-----------QV 156 + I V + E++ H ++ Sbjct: 79 GQTSVIMLTVHDLDEYVYAALRAGASGFLLKDAPPEELVRAVHTVAAGDALLAPRVTRRL 138 Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + F L + + LT+RE L G ++ EIA LGL+ TV ++L K Sbjct: 139 LQRFASLGVRDAGTELSGLTDRERDVLLEVAKGGSNAEIARNLGLAELTVKSHLYHVMQK 198 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R Q + A G + Sbjct: 199 LHLNSRTQLVITAYETGLV 217 >gi|326792209|ref|YP_004310030.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542973|gb|ADZ84832.1| two component transcriptional regulator, LuxR family [Clostridium lentocellum DSM 5427] Length = 210 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 TERE ++ DG+T+++IA+ L +S TV Y+ + K NR++A Sbjct: 153 TEREVQIAEMMKDGFTNKQIAKTLYISEGTVKNYVSNIYAKTQTENRVEAA 203 >gi|290511715|ref|ZP_06551083.1| two-component system, NarL family, uhpT operon response regulator UhpA [Klebsiella sp. 1_1_55] gi|289775505|gb|EFD83505.1| two-component system, NarL family, uhpT operon response regulator UhpA [Klebsiella sp. 1_1_55] Length = 197 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 6/118 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQ--VITDFLELFKKRSS 169 A I V + L+ + +I A K + Sbjct: 74 ATIMLSVHDSPALIEQALNAGARGFLSKRCSPDELIAAVRTVAAGGCYLTPDIAMKLAAG 133 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE + G +EIA +LGLS TV+ + + KL N ++ + Sbjct: 134 RQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELARR 191 >gi|295700944|ref|YP_003608837.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440157|gb|ADG19326.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 218 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQL 184 ++FL + D +R+S+A +LT RE + L Sbjct: 103 AMKAGATDFLAKPFRDQDMLDAVDQALAADEKRRNTERASSALRRCYESLTPREREVMAL 162 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++IA ++GLS TV + G A K++A + KA G Sbjct: 163 VASGLRNKQIAAEMGLSEITVKIHRGQAMRKMEASTLADFVLKAKALGI 211 >gi|302524582|ref|ZP_07276924.1| two component system response regulator [Streptomyces sp. AA4] gi|302433477|gb|EFL05293.1| two component system response regulator [Streptomyces sp. AA4] Length = 215 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 2/127 (1%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 L +G V ++ + + AH ++ + Sbjct: 91 ERALGLGASGFLLKAGDPRELLAGVHAVADGAAFLSPKV--AHRVITRLSGNRFSRAATA 148 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L L +G ++ +IA ++ + TV A++ + +LD NR+QA Sbjct: 149 RERVSVLTNREREVLVLLAEGLSNADIAARMFVVEGTVKAHVSTILTRLDVRNRVQAAIT 208 Query: 228 AIRFGYI 234 A G + Sbjct: 209 AFEAGLV 215 >gi|171914538|ref|ZP_02930008.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 236 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + A L+ RET LQL +G ++E AE L +SV TV + Sbjct: 134 RRNHHAQKAYNQGDLPSRKAPSRLSSRETEVLQLIAEGKANKETAEILHISVKTVEKHRQ 193 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL+ + AI G I Sbjct: 194 SLMEKLNIHDTASLTRHAIATGII 217 >gi|170782950|ref|YP_001711284.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157520|emb|CAQ02714.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 234 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 38/99 (38%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E + + + +T+RE+ L L G +++E+ Sbjct: 122 ARELVEALERIHAGEELFNQAPLRAASAPSLDWPGKREGITDRESEILALITQGKSNQEV 181 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A LS +TV +Y+ S K+ +R QA+ + G+ Sbjct: 182 AALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHGF 220 >gi|303256121|ref|ZP_07342138.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|302861091|gb|EFL84165.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] Length = 215 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 I EA LE ++ A ++LT RE +LA G +++EIA +L ++V TV Sbjct: 126 IEEACRLSLDNFGASLE-DREVIKAFKSLTPREKEIFELAAGGKSNKEIAAELDIAVATV 184 Query: 206 NAYLGSATVKLDAVNRIQAIAK 227 + +A K+ + I+A+ K Sbjct: 185 KMHRANAFEKMSVHSSIEALHK 206 >gi|288958810|ref|YP_003449151.1| two-component response regulator [Azospirillum sp. B510] gi|288911118|dbj|BAI72607.1| two-component response regulator [Azospirillum sp. B510] Length = 223 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT R+ L DG ++++IA +LGL+ TV ++ + L NR QA A Sbjct: 163 GDQLTPRQRDVLVRLRDGKSNKQIAHELGLTEGTVKVHVTAILRHLGVRNRTQAALTAQS 222 Query: 231 F 231 Sbjct: 223 L 223 >gi|253575444|ref|ZP_04852781.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845091|gb|EES73102.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 201 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L+ G ++ EIAE L L+ TV YL A KL R QA +A G Sbjct: 140 PLTERETEVLRLSHAGRSTREIAETLFLTEGTVRNYLSLAIQKLGVETRQQATERAKERG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|240140620|ref|YP_002965100.1| putative transcriptional regulator, PAS domain S-box [Methylobacterium extorquens AM1] gi|240010597|gb|ACS41823.1| putative transcriptional regulator, PAS domain S-box [Methylobacterium extorquens AM1] Length = 500 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 7/94 (7%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLG 199 + +A + +I L L + LT RE L G T EIA +LG Sbjct: 393 MADASWFSHGIIEK-LALMRNPPPPGKPAALVEKLTRRERDLLLGICKGATDSEIAAELG 451 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS+ TV +L S K+ R + A G Sbjct: 452 LSLSTVRNHLASLYRKIGVNRRSAVVVWARERGI 485 >gi|257067834|ref|YP_003154089.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558652|gb|ACU84499.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 211 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 4/112 (3%) Query: 125 GFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + G F + + + I H + + L + LT +ET L Sbjct: 102 RTMEAGAHGFMVKDTPVERLVDAIRRVH-QGLRAVDPELAAQSLAVGPS-PLTAKETEVL 159 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q G ++ +IA+ L LS TV +L + KL NR +A+ A G+I Sbjct: 160 QTVATGASTAQIAQTLFLSEGTVRNHLSAVIGKLGVTNRAEAVRAASDNGWI 211 >gi|163853215|ref|YP_001641258.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163664820|gb|ABY32187.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 500 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 7/94 (7%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLG 199 + +A + +I L L + LT RE L G T EIA +LG Sbjct: 393 MADASWFSHGIIEK-LALMRNPPPPGKPAALVEKLTRRERDLLLGICKGATDSEIAAELG 451 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS+ TV +L S K+ R + A G Sbjct: 452 LSLSTVRNHLASLYRKIGVNRRSAVVVWARERGI 485 >gi|149275963|ref|ZP_01882108.1| response regulator [Pedobacter sp. BAL39] gi|149233391|gb|EDM38765.1| response regulator [Pedobacter sp. BAL39] Length = 220 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA +LT+RE L+L D T+ EIAE L +S+ TV+ + + VK A N + A Sbjct: 152 AASSLTQREKEILRLICDECTTAEIAEALSISLRTVDGHRNNLLVKTGAKNVAGLVVFAF 211 Query: 230 RFGYI 234 + I Sbjct: 212 KNKLI 216 >gi|120601631|ref|YP_966031.1| two component LuxR family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120561860|gb|ABM27604.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris DP4] Length = 235 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +R+ LT RE L +G+ + EIA+ L +S TV + + KL + Sbjct: 152 ALEDRRTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSA 211 Query: 222 IQAIAKAIRFGY 233 + A A R G Sbjct: 212 AEVRAFAQRQGL 223 >gi|312141565|ref|YP_004008901.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311890904|emb|CBH50223.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 283 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 1/98 (1%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAE 196 + V L S+ A L+ RE L G + EIAE Sbjct: 185 RSIADRLDDAALTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAE 244 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LGL + T+ +Y+ + KL+ +R +A+ +A R G I Sbjct: 245 RLGLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282 >gi|310643281|ref|YP_003948039.1| transcriptional regulatory protein degu (protease production enhancerprotein) [Paenibacillus polymyxa SC2] gi|309248231|gb|ADO57798.1| Transcriptional regulatory protein DegU (Protease production enhancerprotein) [Paenibacillus polymyxa SC2] Length = 216 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L++RE L L GY ++E+AEKL +SV TV A KL+ +R + + A+ Sbjct: 150 PYEILSKRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLKSRPELVQYAL 209 Query: 230 RFGYI 234 + + Sbjct: 210 KKKML 214 >gi|298293707|ref|YP_003695646.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296930218|gb|ADH91027.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 218 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 5/117 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTE 176 P+ + K G V F ++ ++ +++A + ++ + E K S LT Sbjct: 99 IPMTVRAMKAGAVDFLTK--PFRDQDMLDAVASAIRLDRERREARKAVSGVQNLYETLTP 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE ++L G ++++A ++GLS TV + G K+ A + + + A G Sbjct: 157 REKQVMELVTSGLMNKQVAAEVGLSEITVKIHRGHVMRKMGAHSLAELVRMAETLGL 213 >gi|229822369|ref|YP_002883895.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568282|gb|ACQ82133.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 221 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +VI +F RS+ L + RE ++L G ++ EIA L L TV ++ Sbjct: 130 LTRRVIDEFARRRAPRSADPDALGLLSPRELEIVELLSRGSSNAEIAAALVLEPSTVKSH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L K +R+Q + A G + Sbjct: 190 LSRIMTKTATRDRVQLVVWAFTHGVV 215 >gi|149920858|ref|ZP_01909320.1| hypothetical protein PPSIR1_38636 [Plesiocystis pacifica SIR-1] gi|149818257|gb|EDM77710.1| hypothetical protein PPSIR1_38636 [Plesiocystis pacifica SIR-1] Length = 268 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ L+ R+ QL +G T+ IAE LG+S TV ++L +L +R + Sbjct: 201 AQPLSPRQLEVSQLVANGMTNAAIAEALGISPRTVTSHLDHIYGRLGIGSRAALTRWIVE 260 Query: 231 FGY 233 G Sbjct: 261 RGL 263 >gi|126667193|ref|ZP_01738167.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter sp. ELB17] gi|126628349|gb|EAZ98972.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter sp. ELB17] Length = 221 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ +D + +K + +LT ++ L + +G +++IA L +S T+ A++ + Sbjct: 137 RMHSDATDFSEKLA----SLTPQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFR 192 Query: 215 KLDAVNRIQAIAKAIRF 231 KL NR QA+ AI+ Sbjct: 193 KLGVRNRTQAV-IAIQQ 208 >gi|238786097|ref|ZP_04630054.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] gi|238713004|gb|EEQ05059.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] Length = 209 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 13/160 (8%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + ES L RL + F I + G + ++ Sbjct: 48 VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107 Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E++ L ++ LT RE QL +G + + I Sbjct: 108 PD-ELVQALRTVNGGGLYLCSDALRALRHMPQQPQQLAVLTPREKEIFQLLINGISVKSI 166 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+L LS TV+ + + KL ++ + A++ + Sbjct: 167 AEQLRLSHKTVHVHRANILGKLQCETTVELVHFALQHQLL 206 >gi|93005507|ref|YP_579944.1| two component LuxR family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92393185|gb|ABE74460.1| two component transcriptional regulator, LuxR family [Psychrobacter cryohalolentis K5] Length = 211 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +S L++RE + + + ++IA++L +SV T+N Y K++ + + Sbjct: 138 LSDNANSPFDLLSDREKQVAMMVVNCQSPQQIADQLFVSVKTINTYRYRIYEKVNVDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR G I Sbjct: 198 KLTHLAIRHGLI 209 >gi|307330023|ref|ZP_07609174.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884284|gb|EFN15319.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 216 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 6/118 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LT 175 VR G + ++ A + + + L S +A LT Sbjct: 96 VRAGARGYLLKGAGRDEILRALHTVARGGAVFSPRMAERLGALVGASGSASAKEAFPTLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G +IA++L ++ TV ++GS KL +R QAI +A + G Sbjct: 156 AREREVLDLLAAGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRARQAGL 213 >gi|288926651|ref|ZP_06420565.1| transcriptional regulator [Prevotella buccae D17] gi|288336561|gb|EFC74933.1| transcriptional regulator [Prevotella buccae D17] Length = 213 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 37/84 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C ++ L + LT+ ET L+ G+T+ EIAE+ S HTVN + Sbjct: 123 FICRRMTEMLLAPRQNEEEERVKLTKTETEVLKEIALGFTTREIAERRFSSFHTVNTHRK 182 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +A A+R G + Sbjct: 183 NIFRKLGVNTVHEATKYALRAGLV 206 >gi|290957607|ref|YP_003488789.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647133|emb|CBG70232.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 204 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 DI ++ GD+ L + + E + + + L L + Sbjct: 29 DIEVVVQVARGDEVLAAAR--AHAVDVALLDIEMPGATGIEAAAELHRALPVVKLVVLTT 86 Query: 123 RLGFHKNGYVIFTSEF----LMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTE 176 + + +A + + D + A LT+ Sbjct: 87 FGRPGYLRSAMEAGADAFLVKDAPAAQLADAVRRVLAGERVIDPTLAAAALAGGANPLTD 146 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ A DG T+ E+AE L LS TV YL +A KL NR +A+ A G++ Sbjct: 147 REREVLRAAADGSTNAELAEALHLSPGTVRNYLSTAIQKLAVRNRTEAVRTAREKGWL 204 >gi|262201684|ref|YP_003272892.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085031|gb|ACY20999.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 231 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 3/123 (2%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + + + + A Sbjct: 111 RAGARGYVTKTISGADLADAVRRVADGDAVFSPRL---AGFVLDSFTGKSSAPEPPLDPE 167 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE+L +S+ TV + + K NR A Sbjct: 168 LDSLTRRELEVLRLLARGYTYREIAEELFISIKTVETHASNVLRKTQQSNRNALTRWAAT 227 Query: 231 FGY 233 Sbjct: 228 RHI 230 >gi|213026240|ref|ZP_03340687.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 104 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 44/91 (48%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + ++E + A + + ++ + A LT +E + + +G +++ IA Sbjct: 2 RDIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIAR 61 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L +S+ TV +L + K + +NR + +++ Sbjct: 62 QLNISLSTVKTHLRNIFAKTEVINRTELVSR 92 >gi|331695485|ref|YP_004331724.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950174|gb|AEA23871.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 244 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 37/79 (46%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V+ + + LTERE L+L G ++ EIA +L +S TV ++ + K Sbjct: 166 VVDVLRDEDGGARPRGQMLTERENQVLKLLAVGMSNREIAVRLLISEATVKFHVRNLREK 225 Query: 216 LDAVNRIQAIAKAIRFGYI 234 LD R + + A R G + Sbjct: 226 LDVRRRTEIVYTATRQGMV 244 >gi|297160246|gb|ADI09958.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 190 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE L LA G S +IA +L LSV TV YL S KL+A NR+ AI A Sbjct: 128 QPLTPRELEVLLLASQGEGSAQIAARLYLSVGTVRNYLTSVVTKLNARNRVDAIRIAREA 187 Query: 232 GYI 234 G++ Sbjct: 188 GWL 190 >gi|293413618|ref|ZP_06656267.1| two-component system [Escherichia coli B185] gi|291433676|gb|EFF06649.1| two-component system [Escherichia coli B185] Length = 209 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147 I E+ L RL F I + + L E ++ Sbjct: 53 IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112 Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A H C I L + + A LT RE L G + +EIA KL Sbjct: 113 QAVRSVGLGGHYLCADAIL-ALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLA 171 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV+ + + KL+ + I+ + A+ + Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206 >gi|291300276|ref|YP_003511554.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569496|gb|ADD42461.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 1013 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 1/140 (0%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGAC 153 + + +SGQ + L G A + R + L + E Sbjct: 872 DAPLRTSGQAADALLRGRGQAADVPLRARGQASDAPLREAATIAAKLGARPLAERVARLA 931 Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 QV E + R LT RE L+L G ++ +IA +L +SV T ++ Sbjct: 932 AQVGIAVGEAPQANPGPGRGLTAREVDVLRLLAKGLSNRQIAGELFISVSTAGVHVSRIL 991 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KL+ +R +A A A R + Sbjct: 992 AKLEVASRGEAAALAHREQW 1011 >gi|269836626|ref|YP_003318854.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785889|gb|ACZ38032.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 1034 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 40/82 (48%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 ++ L + ++ L+ RE L+L +G T E+AE+L +S TV +L S Sbjct: 952 AKPLLAVIDHLEPRPTAVPGGLSAREIEVLRLVAEGLTDAEVAERLSISPRTVGGHLQSI 1011 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R A + A +FG + Sbjct: 1012 YNKLGISSRTAATSFAHKFGLV 1033 >gi|189461961|ref|ZP_03010746.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136] gi|189431355|gb|EDV00340.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136] Length = 195 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + +L+ RE L L G ++EIA+KL +S+ TV ++ + T KL Sbjct: 116 HHPVSPQEMQQEHDLSPREIEVLTLITKGLINKEIADKLNISLTTVISHRKNITEKLGIK 175 Query: 220 NRIQAIAKAIRFGYI 234 + A+ GY+ Sbjct: 176 SVSGLAIYAVMHGYV 190 >gi|111020362|ref|YP_703334.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819892|gb|ABG95176.1| protein kinase/ transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 1094 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E E + + + + +A LT RE +L +G T++EI Sbjct: 990 AFEKESRVGERLEHLASIEFALQKRTSKPAPATPAAKVKLTPREKEVGKLVAEGLTNKEI 1049 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AE+L +S T ++ K +R Q A R Sbjct: 1050 AERLVISPRTAEGHVDRILTKTGHRSRAQLAAWIAR 1085 >gi|332558549|ref|ZP_08412871.1| Transcriptional regulator, LuxR family protein [Rhodobacter sphaeroides WS8N] gi|332276261|gb|EGJ21576.1| Transcriptional regulator, LuxR family protein [Rhodobacter sphaeroides WS8N] Length = 200 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 27/209 (12%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L ++ I F + P + L+ + ++ Sbjct: 3 LSDMKEAFLQIAQA----GF-YVALRLGFYSPEDE-----LNTFPEQFVELYTARGLALQ 52 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHKNGY 131 D + + + W ++ + + + G + R K + Sbjct: 53 DPLMRWTFTNHGALRWSAVDQPDPLGVIARY-----RQYGMRYGATICLAGRGPVPKKSF 107 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 IF ++ I++ + + ++LTE + L++ G Sbjct: 108 GIFARADREFSDAEIVDLRELLTTLHVN----------EPQSLTESQVEVLRMLSTGMRY 157 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +++A LG+S V A L A +++A Sbjct: 158 KQMAYALGISESAVKARLKGAAQRMNAKT 186 >gi|313158585|gb|EFR57979.1| transcriptional regulator, LuxR family [Alistipes sp. HGB5] Length = 195 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 7/138 (5%) Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 + R +L +G P + + + +++ HG Sbjct: 60 FVTHGSFFRARRSKTILLCSGQPQPAYA---DMHCIDVCTNEEAIVRDILRMHHG----A 112 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + A L+ RE L L GY +++IA+ L + + TV ++ + KL Sbjct: 113 HRSEHIVPGAVRPEAAPLSGREAEVLALIARGYMNKQIADSLQIGLTTVISHRRNIMEKL 172 Query: 217 DAVNRIQAIAKAIRFGYI 234 + A+ GY+ Sbjct: 173 GIRSVAGLAIYALTAGYV 190 >gi|296159395|ref|ZP_06842220.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295890379|gb|EFG70172.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 493 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 43/114 (37%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P + + EV+ A +E + RS L+ RE Sbjct: 380 PAFSPDEAAALLTEQARAGRFDAEVVKATVSAELGDCRASVEDDRARSPKTGLLSPREAE 439 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G +++E+A L LS TV ++ S KL+ R A KA GYI Sbjct: 440 VLKHISLGASNKEVARALELSPSTVRTHVESVFRKLECSTRAAATLKASALGYI 493 >gi|282861267|ref|ZP_06270332.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563925|gb|EFB69462.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 1044 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 52/176 (29%), Gaps = 19/176 (10%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL-----------LPFAGIAFPVRLG 125 L P W ++ + Sbjct: 865 LARAEGTDTPEDWARAAAAFGPLRRPYELAQVRHRWAESVIAASGDRGTATELLREAHTV 924 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSAARN--LTER 177 + G + +LA I G D L + + A + LT R Sbjct: 925 AERLGALPLAKNIGLLARRARIALTGPADHGRAGGPGGEDGETLSEPAADAVESFGLTSR 984 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E +L GYT+ IAE+L +S T + ++ + KL +R +A A A RF Sbjct: 985 EQEVHRLVAAGYTNRRIAEELYISPKTASVHVSNILAKLGVASRGEAAALAHRFRL 1040 >gi|111021179|ref|YP_704151.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110820709|gb|ABG95993.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 223 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 40/95 (42%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +AN +I + ++ + + LT+RE L L GY + I+ +L Sbjct: 125 RAVANGEVILGAAVAARAMSFMAASRRVGPTVFPELTDREREVLDLVARGYDNASISRRL 184 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS TV ++ + KL +R AI +A G Sbjct: 185 VLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 219 >gi|331002765|ref|ZP_08326280.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon 107 str. F0167] gi|330407178|gb|EGG86682.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon 107 str. F0167] Length = 215 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE + L +GY++ +IAE+L +S TV +L + KL +R + Sbjct: 142 ETLTKRELEVVLLLKEGYSNAKIAEELFVSEGTVKKHLSNIFGKLQLYSRTE 193 >gi|325000569|ref|ZP_08121681.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Pseudonocardia sp. P1] Length = 101 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 36/83 (43%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + LE + A L+ RE+ L+L +G T+++IA +L LS TV ++ Sbjct: 18 AFSPGLAAVVLESVAAPAVAVPALSPRESEVLRLVVEGLTAKQIAGRLVLSPRTVENHVQ 77 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 K R + +AI G Sbjct: 78 RLLRKFGVPGRGALVRRAIEHGL 100 >gi|318060640|ref|ZP_07979363.1| two component system response regulator [Streptomyces sp. SA3_actG] Length = 226 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT RE L G +++EIA +L +S TV ++ A K+ A +R Q + Sbjct: 155 SARLAALTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVI 214 Query: 228 AIRFGYI 234 A G + Sbjct: 215 AYETGLV 221 >gi|312139261|ref|YP_004006597.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311888600|emb|CBH47912.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 291 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 38/239 (15%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGL---- 84 R A+ + ++ +H+Y + Y L + Sbjct: 57 GLRGLAVSESSGLGGHVVARRNPAAVHDYG-----RARTITHHYDGPVLAEGLCSVLAVP 111 Query: 85 -------LPIIWQSIQEETVIESSGQLSV-----------------RLEGGLLPFAGIAF 120 +++ +I+E + + LL A Sbjct: 112 VVVRGNSRAVMYAAIRERVRLGDRIADVMMQAGRRLANEIAIRDEVDRRVALLDAAAAEV 171 Query: 121 PVRLGF-----HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 P G + + + + + ++ R + L+ Sbjct: 172 PAPGGADAEEIRDVHAELRSIAQTVDDPALQEQLRALSNRLAGVGAADDTDRPTPPVALS 231 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L A G ++ IAE+L + TV +YL SA KLDA +R +A+ A R G + Sbjct: 232 PREVDVLSHAALGCSNVVIAERLSVKPETVKSYLRSAMSKLDAHSRREAVVAARRLGLL 290 >gi|311109177|ref|YP_003982030.1| response regulator 18 [Achromobacter xylosoxidans A8] gi|310763866|gb|ADP19315.1| response regulator 18 [Achromobacter xylosoxidans A8] Length = 236 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 27/181 (14%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGY 131 P + + L + A + L GY Sbjct: 55 RLASQPFALALVDLGLPDGNGTDLIAEMHAEDPSLAILVISAWSTEDAILAALRAGATGY 114 Query: 132 VIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARN-------------- 173 V+ + L ++ + G + EL +R+ + Sbjct: 115 VLKERDDLEVSLSIRSVLRGGAPIDPFVARRIIEELRPRRTGPSDAAAGDPAESADSGET 174 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE+ L+L +G + EIAE+L LS +TV ++ KL +R +AI A G Sbjct: 175 LSPRESQILRLVSEGLGNREIAEELHLSRYTVECHVKHIYRKLAVSSRTRAIHAARTRGL 234 Query: 234 I 234 + Sbjct: 235 L 235 >gi|251795068|ref|YP_003009799.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542694|gb|ACS99712.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 218 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 12/137 (8%) Query: 110 GGLLPFAGIAFPVRLG----FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLE 162 +L + G +G++ T L N + G ++ Sbjct: 75 RRVLIYTGYEISTHYNLLIECGVSGFISKTVSREQLHNNIRCAMRGEAVIPITLLKQLRR 134 Query: 163 LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 K + A + ++ ER+ LQ G ++++IA KL +S TV L KL Sbjct: 135 NEVKITRAEKAIEEVSINERDQDILQEVASGSSNKDIAAKLHMSQRTVEYNLTRIFEKLS 194 Query: 218 AVNRIQAIAKAIRFGYI 234 +R +AI +A R G I Sbjct: 195 VRSRSEAIVEAKRLGLI 211 >gi|6094276|sp|P56644|SGAR_HYPME RecName: Full=Probable transcriptional regulatory protein sgaR Length = 211 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RE L +G+T+ +IA + G+S +TV +L + KL NR A+A Sbjct: 144 PLESLTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVAL 201 >gi|325474944|gb|EGC78130.1| hypothetical protein HMPREF9353_00977 [Treponema denticola F0402] Length = 140 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 156 VITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + + E ++ L+++E ++L +G ++++IA K GLS T+ + Sbjct: 56 LFENHEEAEERLIRPLSEIQDEFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNI 115 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 K +R Q A A + G + Sbjct: 116 SVIFDKTFVSDRTQLAAFAFKNGIV 140 >gi|295084625|emb|CBK66148.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacteroides xylanisolvens XB1A] Length = 202 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 152 ACYQVITDFLELFKKRS-SAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + S A+ L+ RE L L G ++EIA+KL +S+ TV Sbjct: 110 LHQHAHHNGYPVKDMPSMPPAQPHQEILSSREIEVLVLITKGLINKEIADKLNISLTTVI 169 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + T KL + A+ GYI Sbjct: 170 THRKNITEKLGIKSVSGLTIYAVMNGYI 197 >gi|284030284|ref|YP_003380215.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809577|gb|ADB31416.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 LT+RE L G ++ EIA +L +S TV A++G Sbjct: 132 RLLDAFAARLPGAAPDPDPRIGQLTDREREVLVEVAKGRSNAEIAGELMVSAATVKAHVG 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R+Q + A G + Sbjct: 192 RILTKLELRDRVQIVVLAYETGVV 215 >gi|196231881|ref|ZP_03130737.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224003|gb|EDY18517.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 195 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ D L AA +LT+RE + LQ+ +G +++E+AE++ ++ TV + Sbjct: 113 FATKLMDDERHLHT----AASHLTDRERAILQMIAEGMSNKEMAERISIAPKTVEHHRAQ 168 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL + A+R G + Sbjct: 169 VMQKLGMHDVATLTRYAVRMGLV 191 >gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 229 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Query: 152 ACYQVITDFLELFKKRSSAARNLTER-----------ETSCLQLAGDGYTSEEIAEKLGL 200 + ++ L L +++S R E + G+T+++I EKL + Sbjct: 121 RSRRTQSEILRLIQQQSQPKPEADPRPTPPELPLTPAEERVFREVIRGFTNKQIGEKLFI 180 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 S TV +L + KL NR Q + A GY Sbjct: 181 SPRTVQTHLTNILSKLSLENRSQLVRFAYERGY 213 >gi|291560732|emb|CBL39532.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 222 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T+ E ++L G G +++EI+ +L LS TV YL + KLD +R Q ++ Sbjct: 155 EEITDAEWEIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQS 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|260778656|ref|ZP_05887548.1| two component transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC BAA-450] gi|260604820|gb|EEX31115.1| two component transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC BAA-450] Length = 131 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + +IAE L + + TV + + KLDA N + A R G Sbjct: 72 LTPREKQVLKLIFEGKRNRDIAEALLIGLKTVETHRMNIMRKLDAHNVADLMKWAHRMGI 131 >gi|311741323|ref|ZP_07715147.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303493|gb|EFQ79572.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 217 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 13/121 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L G+++ T+ L V A G V+ + + L + Sbjct: 98 LRAGAVGFLLKTTAPEALVASVRAAAQGQQQLSPTVLENLVGLAATPPQPEQEMIQPSGL 157 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE QL G ++ EIAE+L +S+ TV ++ K+D NR+ IA A+ Sbjct: 158 AELSERENEIAQLVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IAIAVLG 216 Query: 232 G 232 G Sbjct: 217 G 217 >gi|254428093|ref|ZP_05041800.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] gi|196194262|gb|EDX89221.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] Length = 227 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT ++ + G +++ IA +L ++ TV A++ + KL A NR+QAI A Sbjct: 153 ESLTRKQLQVFERMTRGESNKMIAYELSIAESTVKAHVSAILRKLGATNRVQAILSA 209 >gi|167766736|ref|ZP_02438789.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1] gi|167711490|gb|EDS22069.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1] Length = 222 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T+ E ++L G G +++EI+ +L LS TV YL + KLD +R Q ++ Sbjct: 155 EEITDAEWEIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQS 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|241518365|ref|YP_002978993.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862778|gb|ACS60442.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 203 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RET ++L +G ++++I +L L T+ ++ KL A NR +A + + Sbjct: 144 SLTARETEVIELVAEGLSNKQIGRRLNLQEKTIKHHMTEILSKLGASNRTEAAIRWRQ 201 >gi|116051440|ref|YP_789727.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115586661|gb|ABJ12676.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 827 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193 L + ++ +LF L+ RE + L L G +++E Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I E+L +S+HTV + KL R QA+A+A G + Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826 >gi|320457478|dbj|BAJ68099.1| putative two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 132 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +NLT RET + L GYTS+EI + LG+ TV Y+ T K+D NR QA Sbjct: 63 EDAGQYHKNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQA 122 Query: 225 IA 226 + Sbjct: 123 VI 124 >gi|308177129|ref|YP_003916535.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307744592|emb|CBT75564.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 222 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 2/126 (1%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 AG V+ +E + I A +V Sbjct: 97 RALSGGAAGFMLKSSGPDELISAVLAVAEGAAALSPRI--AQRVIEKVRNLDSSGQSDAQ 154 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + R LT RE L L G T+ EIA +L L+ TV ++ S +K++A NR+ A A Sbjct: 155 TLVRKLTAREHDVLALVGASLTNSEIAGRLFLTEATVKGHMTSIMLKINARNRVDAALIA 214 Query: 229 IRFGYI 234 R G + Sbjct: 215 YRAGIV 220 >gi|300728290|ref|ZP_07061658.1| transcriptional regulator, LuxR family domain protein [Prevotella bryantii B14] gi|299774525|gb|EFI71149.1| transcriptional regulator, LuxR family domain protein [Prevotella bryantii B14] Length = 322 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K + L+ERE + G T++EI + L +S++TV + + KL + Sbjct: 247 KSPHSDEALSEREKDVIVALVQGMTNKEIGDHLCISINTVITHRRNIAKKLQIHSPAGLT 306 Query: 226 AKAIRFGYI 234 AI I Sbjct: 307 IYAIVNNLI 315 >gi|300024629|ref|YP_003757240.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526450|gb|ADJ24919.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 225 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 16/166 (9%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP-VRLGFHKNGYVIFTSEFL 139 P + + + L + + + + + Sbjct: 46 LESKTPFDIVLLDLALPGTRGFEGLLELRKLHPSLPIVVVSALEDPRIVQDVMRYGAAGF 105 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------------LTERETSCLQL 184 + + E A V+ L L K LT ++ S L++ Sbjct: 106 ISKSADRSEIASALKDVMEGSLTLPKGYKPPEAPTNAEARGDLVHRLKMLTPKQLSVLRM 165 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G +++IA +L + TV A++ KL+ +R QA+ +A + Sbjct: 166 LRQGLLNKQIAHELQIEETTVKAHVSEILRKLNVSSRTQAVIEAQK 211 >gi|52142347|ref|YP_084482.1| response regulator of salavaricin regulon [Bacillus cereus E33L] gi|51975816|gb|AAU17366.1| response regulator of salavaricin regulon [Bacillus cereus E33L] Length = 192 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ Sbjct: 120 PTETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVT 179 Query: 227 KAIRFGYI 234 K I+ GYI Sbjct: 180 KGIKLGYI 187 >gi|84622783|ref|YP_450155.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366723|dbj|BAE67881.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 552 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L A +ERE L GY++++IA +L LS +TV +L + Sbjct: 454 RALTIQALLERLSDDDDPAGDIFSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKN 513 Query: 212 ATVKLDAVNRIQAI--AKAIRFGYI 234 KLDA +R A+ A+A++ G + Sbjct: 514 LYRKLDARSRESALAQAQAVQRGLL 538 >gi|256375685|ref|YP_003099345.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919988|gb|ACU35499.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 238 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L+ RE LQL DG +++EI E L LS TV ++L KL +R Q +A A+ Sbjct: 173 TPRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAM 232 Query: 230 RFGYI 234 R G I Sbjct: 233 RAGVI 237 >gi|124008768|ref|ZP_01693457.1| transcriptional regulator, LuxR family protein [Microscilla marina ATCC 23134] gi|123985681|gb|EAY25561.1| transcriptional regulator, LuxR family protein [Microscilla marina ATCC 23134] Length = 214 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + I ++ L LT+RE L G+T +++AE+L +S+ Sbjct: 133 WDDIQRLALFNTAAVSKEHSLS------NYALTKREQEVALLLIKGHTYKQVAEQLFISL 186 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TV + + K ++I+ ++ IC Sbjct: 187 PTVKTHASNIYKKCGVKSKIELLSL-----IIC 214 >gi|119714200|ref|YP_919342.1| response regulator receiver [Nocardioides sp. JS614] gi|119526109|gb|ABL79479.1| response regulator receiver [Nocardioides sp. JS614] Length = 214 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++ EIA L +S T ++ S KL R +A+A+A G Sbjct: 153 LSAREVEVLDLIAAGRSNAEIAASLVVSPKTAKNHVSSILTKLGC-TRTEAVARARDAGL 211 >gi|331003869|ref|ZP_08327361.1| hypothetical protein HMPREF0491_02223 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412061|gb|EGG91458.1| hypothetical protein HMPREF0491_02223 [Lachnospiraceae oral taxon 107 str. F0167] Length = 217 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +T+ E S ++ G +++EIA++L S TV YL + KL+ +R Q AI Sbjct: 155 KAITKNEWSIIEEVAKGKSNKEIAKELNFSEGTVRNYLSTILDKLELRDRTQLAIWAIGR 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|300743763|ref|ZP_07072783.1| DNA-binding response regulator, LuxR family [Rothia dentocariosa M567] gi|300380124|gb|EFJ76687.1| DNA-binding response regulator, LuxR family [Rothia dentocariosa M567] Length = 201 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 44/110 (40%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 ++G F ++ I +V+ D L + A L R L+L Sbjct: 92 RALESGACAFITKDQDAEEVSNIIRDIHSGKVVVDSALLLSGATLPANPLKPRHQDVLKL 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T +IA +L LS TV YL A L +R++A A G+I Sbjct: 152 TMEGKTVNQIARELYLSHGTVKNYLSEAIQLLHCTSRVEAAHTARTNGWI 201 >gi|167572664|ref|ZP_02365538.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 267 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 15/214 (7%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + Y I++A P +L + L + Sbjct: 57 ASLQALARPTAV---VFYRIDTA-GEPADFELFGMSASMHRAYVSRYRPLDPLH--PSRC 110 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-- 136 G + + + +E + + +R G Sbjct: 111 AAQPGAIVTLASQLPDERRA--ASSYWTGFLRRHGVADVVEMLLRDGGAAVAAFSLLRLA 168 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTS 191 + + + V L + +R + LT RE +L DG ++ Sbjct: 169 GDGRYSADELAALRAVQPVVEVALLPPLRAVRGIRRIACDARLTHREEQIARLVRDGRSN 228 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +EIA L L TV +L KL NR + + Sbjct: 229 KEIARDLSLGQPTVKTHLLRMFRKLGVSNRTELV 262 >gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 242 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + T RE S LQL +G ++EIA KL S+ V Y+ +K +R + + A+ Sbjct: 179 PSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALEN 238 Query: 232 GYI 234 + Sbjct: 239 HLV 241 >gi|91787064|ref|YP_548016.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696289|gb|ABE43118.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 213 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Query: 151 GACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +V + + L+ RE +L DG T +IA +L LSV TV+ + Sbjct: 124 FISAEVAEQLALGAMPGSEAPRHDCLSNREFEVFRLVVDGMTLTDIAAQLHLSVKTVSTH 183 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + K+ N+ + I A++ G Sbjct: 184 KVNLMHKMGLHNQSELIRYALKHGL 208 >gi|150018684|ref|YP_001310938.1| two component LuxR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905149|gb|ABR35982.1| two component transcriptional regulator, LuxR family [Clostridium beijerinckii NCIMB 8052] Length = 219 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE +L G ++++I L L+ TV YL + KL+ +R + Sbjct: 158 ELLTQREMDVAKLVAQGNSNKDICHTLFLTEGTVKNYLTNIFEKLELSSRTELALF 213 >gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 222 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R S++ LTERE L+ G T+++IA+ L LS TVN +L VKL R Sbjct: 149 AAAYTRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETR 208 Query: 222 IQAIAKAI 229 A + A+ Sbjct: 209 TAATSVAL 216 >gi|322614808|gb|EFY11737.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618915|gb|EFY15803.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623622|gb|EFY20461.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629079|gb|EFY25858.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631800|gb|EFY28554.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637463|gb|EFY34165.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642147|gb|EFY38757.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645829|gb|EFY42350.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649793|gb|EFY46218.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653193|gb|EFY49526.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660658|gb|EFY56894.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664810|gb|EFY61003.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668811|gb|EFY64963.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670683|gb|EFY66816.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679079|gb|EFY75134.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682106|gb|EFY78131.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685064|gb|EFY81061.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193043|gb|EFZ78266.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196875|gb|EFZ82017.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203860|gb|EFZ88877.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207054|gb|EFZ92007.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209899|gb|EFZ94813.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214419|gb|EFZ99170.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220141|gb|EGA04605.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226305|gb|EGA10517.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230258|gb|EGA14378.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233996|gb|EGA18085.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238310|gb|EGA22368.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243997|gb|EGA28006.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246585|gb|EGA30559.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252172|gb|EGA36029.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257780|gb|EGA41459.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261204|gb|EGA44796.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264864|gb|EGA48363.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272428|gb|EGA55835.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 210 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I A Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208 Query: 233 YI 234 + Sbjct: 209 LL 210 >gi|311693703|gb|ADP96576.1| two component transcriptional regulator, LuxR family [marine bacterium HP15] Length = 221 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ +D + +K + +LT ++ L + +G +++IA L +S T+ A++ + Sbjct: 137 RMHSDATDFSEKLA----SLTPQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFR 192 Query: 215 KLDAVNRIQAIAKAIRF 231 KL NR QA+ AI+ Sbjct: 193 KLGVRNRTQAV-IAIQQ 208 >gi|298250464|ref|ZP_06974268.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548468|gb|EFH82335.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 3/100 (3%) Query: 138 FLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E+++ ++ LTERE L G S+EI Sbjct: 119 ERAARGEMLLQPELLQRVLDYAARRAAPASPPPGNSNVQLTEREQEVLAGIATGERSKEI 178 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LG++ TV +YL S KLD +R A+A AI G + Sbjct: 179 GARLGITRRTVESYLNSIYTKLDVDSRAAAVAVAIERGLL 218 >gi|297159287|gb|ADI08999.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + + ++ ++E + ++ Sbjct: 98 AAVEAGACGYLLKSASGDEIADAIRSAAEGETLIPASTLVEVLAR----HRETARSSAQQ 153 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT RE L L G + +AE+L +S TV ++ KL+ ++++A+AK Sbjct: 154 TERLESLTPREQEILTLMSQGLDNRAVAERLSISYATVRTHVRKILEKLEVRSQLEAVAK 213 Query: 228 AIRFGY 233 A +G+ Sbjct: 214 AADWGF 219 >gi|239933574|ref|ZP_04690527.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441947|ref|ZP_06581337.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344842|gb|EFE71798.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 231 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 3/106 (2%) Query: 132 VIFTSEFLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + A + ++ G + + LT RE L L G Sbjct: 113 ELLGAVRTVAAGDALLSPSATRGLIRRFLAQPEPCTAAVHERLECLTRRERDVLGLVALG 172 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EEIAE+L +S T ++ A KL +R Q + A + G + Sbjct: 173 LSNEEIAERLFVSPLTAKTHVNRAMTKLAVRDRAQLVVVAYQCGVV 218 >gi|329848633|ref|ZP_08263661.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] gi|328843696|gb|EGF93265.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] Length = 246 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 11/218 (5%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 + ++ + FA+ A + + + D D Sbjct: 35 IQALRRIVPFDFFAM--SGMAPFGLGVGRGVMLATDMPEDFIRKFLAEKLYPHDP----L 88 Query: 81 NSGLLPI----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + P+ W ++ + + + LE G + G V F Sbjct: 89 SFLVTPVNPWGSWHDLEPDALTGTGIPRIRALEREYGITTRTVVGFFNGDERYGGVTFCR 148 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 NE A V + + F ++ L+ E CL +GY EI E Sbjct: 149 SSPFSDNET-FILEMATRVVHAELSDKFLSDMNSHMGLSAGELLCLGHFANGYDISEIEE 207 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + T+ +Y SA KL A R A+A+A+R I Sbjct: 208 ATGYTTETIYSYSKSAAKKLGARARTDAVAEAMRRKLI 245 >gi|297195101|ref|ZP_06912499.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152625|gb|EFH31883.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 39/97 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L+ ++ ++ LT RE L+L G T+ EIA + Sbjct: 119 RLVARSDSLLFPAAVRSLAAEYGRREAVTAPPWVARLTGREAEVLRLMATGLTNAEIAGR 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G+ T ++ + K+ A +R QA+ A G+I Sbjct: 179 MGVGPATTKTHVAAVLGKIGARDRTQAVIAAYESGFI 215 >gi|296388063|ref|ZP_06877538.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 827 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193 L + ++ +LF L+ RE + L L G +++E Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I E+L +S+HTV + KL R QA+A+A G + Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826 >gi|167584977|ref|ZP_02377365.1| two component transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 227 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ H + + + +S LT R Sbjct: 111 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGHTFFSEGLAARMIHASAAASPLDRLTPR 170 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 171 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 224 >gi|227818611|ref|YP_002822582.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|36958866|gb|AAQ87291.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227337610|gb|ACP21829.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 267 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 66/238 (27%), Gaps = 41/238 (17%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD----SGDIPNILIETYG 73 RL + + ++ +++ + +D + Sbjct: 30 FRRL--MSALMTFDYVVVFAYRG------KERPLDLYSTFDAKDHVLFVSLYQAGPYLL- 80 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D F H P +W+ + S + + F V + + Sbjct: 81 DPFY-HAACAPKPGVWRMRELAPDRFFSSEYYRTYYVRTGLAEEVGFFVTVSEQVTVVLS 139 Query: 134 FTSEF-----LMLANEVI---------------IEAHGACYQVITDFLELFKKRS-SAAR 172 ++ + + + +K A Sbjct: 140 LMRREATGVFGPAEFALLKKAEPMVAALVRHHWADLDRRFDAALANMGRSRRKAVHPPAD 199 Query: 173 ------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 NLTERE + ++L G++SE I KLG+S TV + + KL ++ Q Sbjct: 200 GVWQHLNLTEREAAIIELVLQGHSSESIGLKLGISTGTVKVHRRNVYRKLGISSQTQL 257 >gi|92116468|ref|YP_576197.1| two component LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799362|gb|ABE61737.1| two component transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 210 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAE 196 + +E +I A + + LT RE L G ++++A Sbjct: 105 PVPSEQLIGAIERALARHESVRSQRSRLDTVLALLAKLTPRERQVFDLIVRGRINKQVAR 164 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LG + TV A+ K+ + + ++ A R G I Sbjct: 165 ELGTTERTVKAHRHEVMEKMRVHSLAELVSIAERLGLI 202 >gi|42527826|ref|NP_972924.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|41818654|gb|AAS12843.1| DNA-binding response regulator [Treponema denticola ATCC 35405] Length = 217 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 156 VITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + + E ++ L+++E ++L +G ++++IA K GLS T+ + Sbjct: 133 LFENHEEAEERVIRPLAEIQDEFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNI 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 K +R Q A A + G + Sbjct: 193 SVIFDKTFVSDRTQLAAFAFKNGIV 217 >gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] Length = 245 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + ++ L + T RE S LQL +G ++EI Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEAL-PSTEPVVHSFTPREASVLQLVAEGLMNKEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ K +R + + A+ + Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244 >gi|228915760|ref|ZP_04079341.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843862|gb|EEM88930.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 191 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K Sbjct: 121 TETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTK 180 Query: 228 AIRFGYI 234 I+ GYI Sbjct: 181 GIKLGYI 187 >gi|224535141|ref|ZP_03675680.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus DSM 14838] gi|224523238|gb|EEF92343.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus DSM 14838] Length = 209 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ RE L L G ++EIA+KL +S+ TV ++ + T KL + A+ Sbjct: 142 HDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVAGLTIYAVMH 201 Query: 232 GYI 234 GY+ Sbjct: 202 GYV 204 >gi|218890380|ref|YP_002439244.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218770603|emb|CAW26368.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 827 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193 L + ++ +LF L+ RE + L L G +++E Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I E+L +S+HTV + KL R QA+A+A G + Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826 >gi|168699457|ref|ZP_02731734.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 213 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-NLTERETSC 181 GYV + L + A G V +L + + L+ERE Sbjct: 98 AGATGYVPKRAAAADLVGAIRHAAAGRTYLDPSVTGPYLSAEPATEATSDHGLSEREVEV 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY++++IA +L +SV +V Y G A KL +R+ + A+R G++ Sbjct: 158 LKQLTAGYSNKQIAARLEVSVKSVETYKGRAMEKLGIRSRVGLVQFAVRQGWL 210 >gi|123440700|ref|YP_001004692.1| putative two-component response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087661|emb|CAL10443.1| putative two-component response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 210 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + IA +L +S TV + + KLD + I + R G Sbjct: 149 LTPRERQILKLITEGSCNRMIASQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208 >gi|152997248|ref|YP_001342083.1| two component LuxR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150838172|gb|ABR72148.1| two component transcriptional regulator, LuxR family [Marinomonas sp. MWYL1] Length = 213 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S L++RE Q+ D S EIAE L +S TV+ Y KL+ + ++ Sbjct: 141 DGQGSPLGQLSDRELQVAQMIVDCKKSNEIAEHLCVSPKTVSTYRTRIFTKLNIESDVEL 200 Query: 225 IAKAIRFGYI 234 I A+R+ + Sbjct: 201 IRLAVRYNVL 210 >gi|107102954|ref|ZP_01366872.1| hypothetical protein PaerPA_01004023 [Pseudomonas aeruginosa PACS2] Length = 827 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193 L + ++ +LF L+ RE + L L G +++E Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I E+L +S+HTV + KL R QA+A+A G + Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826 >gi|86740192|ref|YP_480592.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567054|gb|ABD10863.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 231 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 160 FLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + L + + LT++E L+L +G T+ +IA ++ L+ TV Y+ S KL Sbjct: 156 LVRLREGPAEDERLSGLTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLSKLG 215 Query: 218 AVNRIQAIAKAIRF 231 +R QA A R Sbjct: 216 LESRTQAAVFATRL 229 >gi|49478066|ref|YP_037282.1| salavaricin two-component response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329622|gb|AAT60268.1| salavaricin two-component response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 192 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K Sbjct: 121 TETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTK 180 Query: 228 AIRFGYI 234 I+ GYI Sbjct: 181 GIKLGYI 187 >gi|83721051|ref|YP_441647.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|167580458|ref|ZP_02373332.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|257139656|ref|ZP_05587918.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83654876|gb|ABC38939.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 279 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ E + L G L P L V+ Sbjct: 63 LHALCQACAPTPVAALTDDASPEHAQALFN--AGVLGVIPRSTRP-HLIVRALEMVLLGG 119 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 120 HYVPPSALNLTEPIARARDGRVDAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217 >gi|254242106|ref|ZP_04935428.1| hypothetical protein PA2G_02835 [Pseudomonas aeruginosa 2192] gi|126195484|gb|EAZ59547.1| hypothetical protein PA2G_02835 [Pseudomonas aeruginosa 2192] Length = 827 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193 L + ++ +LF L+ RE + L L G +++E Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I E+L +S+HTV + KL R QA+A+A G + Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826 >gi|323132148|gb|ADX19578.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 217 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166 A I V G F S+ E+I H +L K Sbjct: 95 ATIVLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 151 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 152 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 211 Query: 227 K 227 + Sbjct: 212 R 212 >gi|319791283|ref|YP_004152923.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593746|gb|ADU34812.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 230 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTER+ LQL G ++ I LG+S TV +L + L+ NR +A+ A Sbjct: 167 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAAQAL 224 >gi|256839247|ref|ZP_05544757.1| transcriptional regulator [Parabacteroides sp. D13] gi|262382307|ref|ZP_06075444.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|301308485|ref|ZP_07214439.1| putative transcriptional regulator, LuxR family [Bacteroides sp. 20_3] gi|256740166|gb|EEU53490.1| transcriptional regulator [Parabacteroides sp. D13] gi|262295185|gb|EEY83116.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|300833955|gb|EFK64571.1| putative transcriptional regulator, LuxR family [Bacteroides sp. 20_3] Length = 193 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE LQL G T++EIA+KL +S++TV + + T KL AI Sbjct: 124 KDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMN 183 Query: 232 GYI 234 G I Sbjct: 184 GII 186 >gi|255012345|ref|ZP_05284471.1| transcriptional regulator [Bacteroides sp. 2_1_7] gi|298374802|ref|ZP_06984760.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19] gi|298269170|gb|EFI10825.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19] Length = 193 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE LQL G T++EIA+KL +S++TV + + T KL AI Sbjct: 124 KDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMN 183 Query: 232 GYI 234 G I Sbjct: 184 GII 186 >gi|291302711|ref|YP_003513989.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571931|gb|ADD44896.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK----RSSAA- 171 LG +G+++ + + L + A GA +VI + R++ A Sbjct: 89 LGDGASGFLLKSGDPRELIAGIHAVAAGAAFLSPQVAQRVIAELARGSGGGKLSRAATAR 148 Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G G ++ EIA++L + TV AY+ + +L+ NR+QA A Sbjct: 149 TKIDKLTDREREVLALVGAGCSNAEIAKRLHVVEGTVKAYVSAILTRLEVRNRVQAAIIA 208 Query: 229 IRFGYI 234 G + Sbjct: 209 YEAGLV 214 >gi|197335562|ref|YP_002157169.1| two-component response regulator [Vibrio fischeri MJ11] gi|197317052|gb|ACH66499.1| two-component response regulator [Vibrio fischeri MJ11] Length = 209 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ LT ++ L + DG +++IA L +S T+ A++ + KL NR Sbjct: 138 AACDDLATKIAALTPQQYKVLGMLSDGLLNKQIAYDLEVSEATIKAHMTAIFRKLGVKNR 197 Query: 222 IQAIAK 227 QA+ Sbjct: 198 TQAVIL 203 >gi|197105564|ref|YP_002130941.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] gi|196478984|gb|ACG78512.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] Length = 226 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ R + A +LT RE L G T EIA++LGLS HTV ++ Sbjct: 139 IARFIVKRARAESGARPAPVQEAPHLTPRELDILWGIAKGLTYNEIADRLGLSRHTVPSH 198 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL R +A+ +A++ G I Sbjct: 199 IKAIYRKLQVATRGEAVYEAVQCGLI 224 >gi|150010404|ref|YP_001305147.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|149938828|gb|ABR45525.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] Length = 193 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE LQL G T++EIA+KL +S++TV + + T KL AI Sbjct: 124 KDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMN 183 Query: 232 GYI 234 G I Sbjct: 184 GII 186 >gi|71065269|ref|YP_263996.1| LuxR family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71038254|gb|AAZ18562.1| putative transcriptional regulator, LuxR family [Psychrobacter arcticus 273-4] Length = 211 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +S L++RE + + + ++IA++L +SV T+N Y K++ + + Sbjct: 138 LSDNANSPFDLLSDREKQVAMMVVNCQSPQQIADQLFVSVKTINTYRYRIYEKVNVDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR G I Sbjct: 198 KLTHLAIRHGLI 209 >gi|16767074|ref|NP_462689.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992368|ref|ZP_02573466.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168241993|ref|ZP_02666925.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450800|ref|YP_002047821.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|136767|sp|P27667|UHPA_SALTY RecName: Full=Transcriptional regulatory protein uhpA gi|154408|gb|AAA27243.1| hexosephosphate utilization protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16422360|gb|AAL22648.1| response regulator (repressor) in two-component regulatory system wtih UhpB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194409104|gb|ACF69323.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205329377|gb|EDZ16141.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338886|gb|EDZ25650.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261248934|emb|CBG26791.1| two-component system response regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996067|gb|ACY90952.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160322|emb|CBW19847.1| two-component system response regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914918|dbj|BAJ38892.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226849|gb|EFX51899.1| Transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332990638|gb|AEF09621.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 196 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166 A I V G F S+ E+I H +L K Sbjct: 74 ATIVLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|331696706|ref|YP_004332945.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951395|gb|AEA25092.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 238 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L+ RE LQL DG +++EI E L LS TV ++L KL +R Q +A A+ Sbjct: 173 TPRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAM 232 Query: 230 RFGYI 234 R G I Sbjct: 233 RAGVI 237 >gi|311696551|gb|ADP99424.1| two-component response regulator [marine bacterium HP15] Length = 279 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE+ L +G T+ EI + L +S TVN +L KL NR A A AIR Sbjct: 217 ELTLRESDVLLWIANGKTNREIGQILDMSPRTVNKHLEQVFRKLGVENRTAAAASAIRL 275 >gi|253996775|ref|YP_003048839.1| two component LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983454|gb|ACT48312.1| two component transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 205 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE + LA G+ +++IA +LG+S TV + + K A + + A + G Sbjct: 143 SLTEREYDVMLLAIQGHHNKDIARQLGISHRTVEIHKSNIMHKTGANHVLDLARIAHKSG 202 Query: 233 Y 233 Sbjct: 203 L 203 >gi|126650269|ref|ZP_01722497.1| two-component response regulator [Bacillus sp. B14905] gi|126592919|gb|EAZ86901.1| two-component response regulator [Bacillus sp. B14905] Length = 208 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+++E LQL G T++ IA +G++ TV YL VKL+ +R +A+ A + Sbjct: 147 LSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVAKEKAW 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|297196139|ref|ZP_06913537.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297153089|gb|EDY63356.2| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 897 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L+ RE L+ ++EEIA L +SV+TV +L S KL R +A Sbjct: 828 PPPPLVAEKLSGRERDVLERLARMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVSRRNEA 887 Query: 225 IAKAIRFGYI 234 + +A G + Sbjct: 888 VRRARELGLV 897 >gi|302381790|ref|YP_003817613.1| LuxR family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192418|gb|ADK99989.1| two component transcriptional regulator, LuxR family [Brevundimonas subvibrioides ATCC 15264] Length = 208 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R LT RE L+ G T++EIA LG+ TV A++ KL +R QA Sbjct: 141 PRPDDLDRLTPREREVLESVARGLTNKEIARDLGIGPGTVKAHVEKLIAKLGVADRTQAA 200 Query: 226 AKAIRF 231 A R Sbjct: 201 VFAARA 206 >gi|242238892|ref|YP_002987073.1| response regulator [Dickeya dadantii Ech703] gi|242130949|gb|ACS85251.1| two component transcriptional regulator, LuxR family [Dickeya dadantii Ech703] Length = 218 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+++L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQTETPLECLSERELQIMMMITKGQKVTEISDQLNLSPKTVNSYRYRMFNKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 INGDVELTHLAIRHGL 208 >gi|254461185|ref|ZP_05074601.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacterales bacterium HTCC2083] gi|206677774|gb|EDZ42261.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacteraceae bacterium HTCC2083] Length = 251 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 10/204 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F+ + ++L P L N+D ++ + + + W Sbjct: 39 GFSHFMSKTSLGDPD---DFVLLTNHDPKYMNLFIGSGLYRDAPMVRWALNNVGACSWGY 95 Query: 92 I---QEETVIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEV 145 + + + + + AG + + + + + Sbjct: 96 LWGELASGSLSEREKQVIEINQQHSVTAGYSISFKAITSRSKGAIALTARAGMSQDEVDA 155 Query: 146 IIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + HG+ ++ + L R+LT+R+ L+ GDG T+++IA +GL+ T Sbjct: 156 VWAEHGSDIVLMNNIAHLKIMTLPLGGRSLTDRQREALEWVGDGKTTQDIALLMGLTAAT 215 Query: 205 VNAYLGSATVKLDAVNRIQAIAKA 228 V +L A V L QA+ KA Sbjct: 216 VEKHLRLARVALSVETTAQAVLKA 239 >gi|207723944|ref|YP_002254342.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2] gi|206589151|emb|CAQ36113.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2] Length = 252 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 57/201 (28%), Gaps = 11/201 (5%) Query: 36 YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95 + + ++ ++ + + + + P+ + + Sbjct: 40 VCSHGRITAAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYFDAAAPA 99 Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLANEVIIEA-- 149 I+ + +A V H G + S V+ + Sbjct: 100 AEIDRG---WLAKFIAYDLRNAVADGVYDEGHCIGTYFSFHRLASVNEPFLASVLRDLTP 156 Query: 150 --HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H + + D + + L+ERE G G ++ EIA +S +TV Sbjct: 157 VLHRTLMRAVADTEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQ 216 Query: 208 YLGSATVKLDAVNRIQAIAKA 228 +L K NR+ A Sbjct: 217 HLKHIMDKTGCANRVGVAVLA 237 >gi|223934338|ref|ZP_03626259.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896801|gb|EEF63241.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 236 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL +G +++IA +L +S+ TV + KL+ + AI Sbjct: 164 DYLTTREAEVLQLIAEGQANKQIAAELCISIKTVEKHRQQVMNKLNIHDVAGLTRHAISK 223 Query: 232 GYI 234 G I Sbjct: 224 GII 226 >gi|183982880|ref|YP_001851171.1| putative regulatory protein [Mycobacterium marinum M] gi|183176206|gb|ACC41316.1| conserved hypothetical regulatory protein [Mycobacterium marinum M] Length = 395 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 3/102 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITD---FLELFKKRSSAARNLTERETSCLQLAGDGY 189 S + + + L + ++ A LT RE L+L G Sbjct: 287 ALASADEAARALQDADLDLRKIEPVERSPAARSLAEVQTRAMAMLTRREVEVLRLMAAGR 346 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+++IA++L +S TV +++ KL A NR +A + +R Sbjct: 347 TNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVRL 388 >gi|164686850|ref|ZP_02210878.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM 16795] gi|164604240|gb|EDQ97705.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM 16795] Length = 826 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 40/79 (50%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I+ + +FL+ KK S L+ERE LA G+T+ EIA+KL +SV+T Sbjct: 737 EAIDEIRILQKAYEEFLKFVKKEKSKVVELSERELEVANLAAQGFTNNEIAKKLFVSVNT 796 Query: 205 VNAYLGSATVKLDAVNRIQ 223 V L + KL +R + Sbjct: 797 VKTILKAVFKKLCIKSRQE 815 >gi|157375894|ref|YP_001474494.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] gi|157318268|gb|ABV37366.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] Length = 211 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + +LT RE LQ G T+ +IA +L +S T+ +L A K+ +R QAIA A Sbjct: 145 SESLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202 >gi|83311866|ref|YP_422130.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82946707|dbj|BAE51571.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 211 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L + G +++EIA L L+ TV ++ + L NR QA A + G Sbjct: 152 LTPRQRDVLGMLRQGKSNKEIARDLSLAEITVKLHVTAILRALGCENRTQAAILAAKMG 210 >gi|328885076|emb|CCA58315.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 217 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 35/104 (33%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++A V LT RE L G+G Sbjct: 113 EAVRTVARGEGLIAPAVTRRLIAEFAAPSRPARPAGGTDPGVLDALTPRERQVLSKLGEG 172 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ EIA +L ++ TV ++ KL+ +R+QA A G Sbjct: 173 LSNAEIAVRLDMAEATVKTHVSKVLGKLELRSRVQAAVLAQELG 216 >gi|309792081|ref|ZP_07686555.1| TPR repeat-containing transcriptional regulator LuxR [Oscillochloris trichoides DG6] gi|308225888|gb|EFO79642.1| TPR repeat-containing transcriptional regulator LuxR [Oscillochloris trichoides DG6] Length = 845 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDG 188 G + + + + G + D L L + L+ERE L+L G Sbjct: 740 GAQAGGGTAWLERAQQLGASEGYQRSFVDDRLVLHVPQPPPLVEPLSEREIEVLRLLAAG 799 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y+ +IA +L LSV+TV ++ KL ++QAI +A GY+ Sbjct: 800 YSYTQIAAQLVLSVNTVRYHIKGLYGKLGVNKQVQAIERARALGYV 845 >gi|126643311|ref|YP_001086295.1| putative two-component response regulator [Acinetobacter baumannii ATCC 17978] Length = 175 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 94 LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 153 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 154 GVQNRTQAV 162 >gi|120609353|ref|YP_969031.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120587817|gb|ABM31257.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 256 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +A L+ RE L+ G +++EIA L ++ TV ++ KL +R+QA Sbjct: 187 PGAAGSASPLSAREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLGLSSRVQA 246 Query: 225 IAKAIRF 231 A Sbjct: 247 AVYASER 253 >gi|331699431|ref|YP_004335670.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954120|gb|AEA27817.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 215 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ + + L+ERE LQ G + ++A +L + V TV ++ KL +R Sbjct: 142 EIRMRAQTTGPALSEREREVLQAFARGLSVPQVAGELFIGVSTVKTHVQRLYEKLGVSDR 201 Query: 222 IQAIAKAIRFGYI 234 A+A+ +R G + Sbjct: 202 AAAVAEGMRRGLV 214 >gi|315608347|ref|ZP_07883336.1| transcriptional regulator [Prevotella buccae ATCC 33574] gi|315249977|gb|EFU29977.1| transcriptional regulator [Prevotella buccae ATCC 33574] Length = 222 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ A+ LT+RE L L G ++EI E L + + TV + + KL + Sbjct: 149 PRALRAKILTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEKLGLKSVSALT 208 Query: 226 AKAIRFGYI 234 A+ GY+ Sbjct: 209 IYAVMRGYV 217 >gi|302544547|ref|ZP_07296889.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462165|gb|EFL25258.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 222 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G+G + +IAE++GL+ TV ++ + KL +NR+QA A R Sbjct: 150 DALTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRA 209 Query: 232 GYI 234 G I Sbjct: 210 GLI 212 >gi|296130400|ref|YP_003637650.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022215|gb|ADG75451.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 229 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGY 189 FT L A + + L + L+ER+ ++L G Sbjct: 127 FTGPDLERAVLAVASGAMLLSAPAAEALRRVPTAAPPGPRSDLGLSERQQEIMELVAAGR 186 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T+ IA++L LS TV ++ +L R +A+ Sbjct: 187 TNGAIAQELYLSEKTVKNHVNHIFARLGVATRAEAV 222 >gi|119471825|ref|ZP_01614158.1| response regulator receiver domain protein (CheY-like) [Alteromonadales bacterium TW-7] gi|119445315|gb|EAW26604.1| response regulator receiver domain protein (CheY-like) [Alteromonadales bacterium TW-7] Length = 201 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL A LT++E L+LA DG + EIA +L +S T YL A KL+A NR Sbjct: 129 ELAINALDDADPLTDKERKALKLASDGLKTSEIATQLFISEGTTRNYLSDAIAKLNATNR 188 Query: 222 IQAIAKAIRFGYI 234 I A A + G++ Sbjct: 189 IDAARIAKQKGWL 201 >gi|109900326|ref|YP_663581.1| two component LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109702607|gb|ABG42527.1| two component transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 212 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E Q+ + L L ++ + LT ++ L+L DG +++IA +L ++ TV A Sbjct: 129 ELKAQIAQIDGEELNLAQRIA----ELTPKQFQVLKLIHDGLLNKQIAHELNVTEATVKA 184 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL+ R QA+ + Sbjct: 185 HISAVFRKLEVNTRTQAVLLLKKLNL 210 >gi|330827950|ref|YP_004390902.1| LuxR family transcriptional regulator [Aeromonas veronii B565] gi|328803086|gb|AEB48285.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565] Length = 282 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 74/251 (29%), Gaps = 39/251 (15%) Query: 12 SSLQELSPRLHLIQNRIKARNFAL---------YTINSALDFPRRQQLICELHNYD-LDS 61 S+ L+ + + + + + FA + AL Q+ + N + + Sbjct: 5 STTDALTRSMTEVVDALHSSAFAAALVRLIQQQVAFDCALLLGVGQRPVYLYDNLNHQRA 64 Query: 62 GDIPNILIETY-GDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIA 119 L + D F+ L +W Q ++ + G G+ Sbjct: 65 LLFDRYLTSHFSQDPFMQALEQDLPAGVWTLAQVSQGRLDPEYRHHFYQATGWQEEVGLI 124 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------- 170 PVR G ++ + L+ + + V + ++S Sbjct: 125 LPVRDGLTLMLFLGRLDKRSTLSRDELARLEQLFPLVHS-LCRQQWRQSQPLLAQSTVLP 183 Query: 171 -----------------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LT RE +L G +E IA +LG+ TV + Sbjct: 184 DSASLKSAVELAMASVGGDGLTRRERQVAELLLQGLDTEAIAAELGIGSGTVKNHRKHLY 243 Query: 214 VKLDAVNRIQA 224 KL +R + Sbjct: 244 GKLRLGSRAEL 254 >gi|265751338|ref|ZP_06087401.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] gi|263238234|gb|EEZ23684.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] Length = 197 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + +++ H A Q + + + K L+ RE L L G ++EIA Sbjct: 98 GSLIKDIHQLRQYGHQARKQAVDKAMHIEK----TEHELSIREIEVLILITKGLINKEIA 153 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +KL +S+ TV ++ + T KL + A+ GYI Sbjct: 154 DKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 192 >gi|237708501|ref|ZP_04538982.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|237723973|ref|ZP_04554454.1| transcriptional regulator [Bacteroides sp. D4] gi|229437637|gb|EEO47714.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|229457430|gb|EEO63151.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] Length = 206 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + +++ H A Q + + + K L+ RE L L G ++EIA Sbjct: 107 GSLIKDIHQLRQYGHQARKQAVDKAMHIEK----TEHELSIREIEVLILITKGLINKEIA 162 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +KL +S+ TV ++ + T KL + A+ GYI Sbjct: 163 DKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 201 >gi|224367385|ref|YP_002601548.1| DNA-binding response regulator (LuxR-family protein) [Desulfobacterium autotrophicum HRM2] gi|223690101|gb|ACN13384.1| DNA-binding response regulator (LuxR-family protein) [Desulfobacterium autotrophicum HRM2] Length = 220 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++ RE LQL +G + +IAE+L +S+ TV A+ + KL + AI Sbjct: 148 PFGRISPREREVLQLIAEGVKTRQIAERLFVSIKTVEAHRRNIMNKLMISSVAGLTRFAI 207 Query: 230 RFGYI 234 + G + Sbjct: 208 QEGLV 212 >gi|212693876|ref|ZP_03302004.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855] gi|212663408|gb|EEB23982.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855] Length = 214 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + +++ H A Q + + + K L+ RE L L G ++EIA Sbjct: 115 GSLIKDIHQLRQYGHQARKQAVDKAMHIEK----TEHELSIREIEVLILITKGLINKEIA 170 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +KL +S+ TV ++ + T KL + A+ GYI Sbjct: 171 DKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 209 >gi|295836038|ref|ZP_06822971.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197695120|gb|EDY42053.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 223 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-------------- 163 + + L ++ ++A +V+ L Sbjct: 80 LVLTTFDEDDHVYGALRAGACGFLVKDMALDAILDAVRVVAAGDALIAPTVTRRLISEFA 139 Query: 164 ----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + LT RE L L G G ++ E+A + +S T Y+ KL A Sbjct: 140 HRAEAEPPTPVPTGLTNREREVLVLVGQGLSNTELAHHMHISTATAKTYVSRLLTKLGAR 199 Query: 220 NRIQAIAKAIRFGYI 234 +R+Q + A + Sbjct: 200 DRVQLVITAYEMKLV 214 >gi|200387543|ref|ZP_03214155.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604641|gb|EDZ03186.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 196 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166 A I V G F S+ E+I H +L K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNNVELAH 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|118443997|ref|YP_877397.1| response regulator [Clostridium novyi NT] gi|118134453|gb|ABK61497.1| Response regulator (CheY-like recever domain and HTH) [Clostridium novyi NT] Length = 209 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L L G G +++EI++K+ LS T+ Y+ + KL +R Q Sbjct: 151 LTERELEILALIGQGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIY 204 >gi|326776427|ref|ZP_08235692.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656760|gb|EGE41606.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 1079 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L G+T+ IAE+L +S T + ++ + KL +R +A A A R Sbjct: 1015 GLTPREQDVHRLVAAGHTNRRIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRLR 1074 Query: 233 Y 233 Sbjct: 1075 L 1075 >gi|307825893|ref|ZP_07656108.1| two component transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307733012|gb|EFO03874.1| two component transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 214 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L++RE + L G T +E++E L LS TVN Y KL N ++ I A Sbjct: 144 SPFALLSQREAEVVTLILQGKTIKEMSEMLVLSDKTVNTYRYRLYSKLHVKNDVELIRLA 203 Query: 229 IRFGYI 234 I+FGYI Sbjct: 204 IKFGYI 209 >gi|300174919|dbj|BAJ10692.1| hypothetical bacteriocin immunity protein [Streptococcus thermophilus] Length = 117 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L G+G +EIA KL +S T+ ++ + KL+ + I+AI KA + Sbjct: 53 HDELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKARK 112 Query: 231 FGYI 234 GYI Sbjct: 113 MGYI 116 >gi|297156887|gb|ADI06599.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G +IA++L ++ TV ++GS KL +R QAI +A G Sbjct: 160 LTAREREVLELLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRAREAGL 219 >gi|302534040|ref|ZP_07286382.1| two component system response regulator [Streptomyces sp. C] gi|302442935|gb|EFL14751.1| two component system response regulator [Streptomyces sp. C] Length = 237 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 34/88 (38%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A D + LT RE L G +++ IA +L +S TV Sbjct: 145 LIASFLAQGGRADAPATGTAHAERLATLTGREREVLVQVAGGLSNDGIAARLEVSPLTVK 204 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL A +R Q + A G + Sbjct: 205 THVNRAMAKLGARDRAQLVVIAYESGLV 232 >gi|182435802|ref|YP_001823521.1| LuxR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464318|dbj|BAG18838.1| putative LuxR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1079 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L G+T+ IAE+L +S T + ++ + KL +R +A A A R Sbjct: 1015 GLTPREQDVHRLVAAGHTNRRIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRLR 1074 Query: 233 Y 233 Sbjct: 1075 L 1075 >gi|169260111|gb|ACA51941.1| BovR [Streptococcus equinus] Length = 198 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L G+G +EIA KL +S T+ ++ + KL+ + I+AI KA + Sbjct: 134 HDELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKARK 193 Query: 231 FGYI 234 GYI Sbjct: 194 MGYI 197 >gi|92113307|ref|YP_573235.1| LuxR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796397|gb|ABE58536.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens DSM 3043] Length = 267 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 22/186 (11%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 D+ D + P I + S + I Sbjct: 70 SDTLRQYINHAYVL-DPLFHAIKNTASPGIVRLADIMPDSFKSTEYYQTCYQNFGLVDEI 128 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFKK------- 166 + L + + + + + + H ++ F + Sbjct: 129 NLLIHLDDEVTCAITLGRKASLESISRIELNALQDFHPIISALMRQFWQTQSDEFLQYGR 188 Query: 167 ---------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 R+ A+ LT+RE L G++S+ IA+ L +SV TV + + +L+ Sbjct: 189 SDGPMKRALRTFASGVLTQREREITDLILRGFSSQAIADHLKISVGTVKVHRKNIHARLN 248 Query: 218 AVNRIQ 223 + + Sbjct: 249 TSTQAE 254 >gi|71908721|ref|YP_286308.1| LuxR response regulator receiver [Dechloromonas aromatica RCB] gi|71848342|gb|AAZ47838.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas aromatica RCB] Length = 202 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---RSSAARNLTE 176 P+ + + G F NE ++ ++ ++ S LT+ Sbjct: 89 VPMAVSALQRGACDFI--EKPFHNEDLLSRIQRALELDNQLSARRQRDGVISHRLDQLTQ 146 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE +QL G +++IA++L +S+ TV A+ K+ + + Sbjct: 147 REREVMQLVVAGKLNKQIADELNISMKTVEAHRARVMEKMGVRTLAELV 195 >gi|320095650|ref|ZP_08027309.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977423|gb|EFW09107.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 216 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A L +S+ TV ++ + KL NR + A++ Sbjct: 154 DLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHVSAVLRKLQLSNRHELTRWAMQR 213 Query: 232 GYI 234 + Sbjct: 214 HIV 216 >gi|302340566|ref|YP_003805772.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301637751|gb|ADK83178.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 214 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT+RE +L GY + EIA++L ++ TV Y+ S KL NR + I A R Sbjct: 153 KDLTKREKEIFKLISRGYDNTEIADELCIAYQTVRNYVSSIISKLGIKNRYEIIKLANRM 212 >gi|300741965|ref|ZP_07071986.1| two-component system response regulator TcsR2 [Rothia dentocariosa M567] gi|300381150|gb|EFJ77712.1| two-component system response regulator TcsR2 [Rothia dentocariosa M567] Length = 210 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+++ + LA I A V+ L + + LTERET L+ Sbjct: 103 LAAGASGFMVKDTSASQLAEG--IRRVHAGMHVVDPALA-AESLAYGESPLTERETEILR 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +AG G T+ I E+L LS TV +L SA KL+A NR +AI A G++ Sbjct: 160 VAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGWL 210 >gi|320007550|gb|ADW02400.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 227 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + LT RE LA G T++EIA + +S T ++ A KL A +R Q Sbjct: 145 DRATAPGLETLTRREREATALAARGLTNDEIAVHMVVSPLTAKTHISRAMTKLRARDRAQ 204 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 205 LVVFAYESGLV 215 >gi|251777972|ref|ZP_04820892.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082287|gb|EES48177.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 243 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE ++L G T++EI KL +S TV ++ + KL +R+ Sbjct: 171 FNEDLFFLENKLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRL 230 Query: 223 QAIAK 227 + + Sbjct: 231 EVVIF 235 >gi|254519013|ref|ZP_05131069.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226912762|gb|EEH97963.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 214 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++E ++ +G T++EI+EKL LS T+ + + KL+ +R Q A + + Sbjct: 154 SDKELQIIKYIAEGLTNKEISEKLYLSEGTIKNNITNILAKLNLRDRTQIAIFAFKNRIV 213 >gi|188590713|ref|YP_001921256.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska E43] gi|188500994|gb|ACD54130.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska E43] Length = 243 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT RE ++L G T++EI KL +S TV ++ + KL +R+ Sbjct: 171 FNEDLFFLENKLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRL 230 Query: 223 QAIAK 227 + + Sbjct: 231 EVVIF 235 >gi|148560164|ref|YP_001258354.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC 25840] gi|148371421|gb|ABQ61400.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC 25840] Length = 213 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA Sbjct: 140 ESLIARLRTLTPQQTRVLTMLTEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 199 Query: 225 IAKAIRFG 232 + R G Sbjct: 200 VILLSRIG 207 >gi|1724131|gb|AAB38509.1| putative response regulator [Rhodobacter sphaeroides] Length = 212 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + +LTER+ + G +++ IA +L L TV ++ + KL A NR + Sbjct: 136 EESHMAVNEHLTERQRAVCDAVRRGKSNKIIAGELNLCESTVKVHIRNIMKKLGAKNRTE 195 Query: 224 AIAK 227 A K Sbjct: 196 AAFK 199 >gi|329957447|ref|ZP_08297922.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] gi|328522324|gb|EGF49433.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] Length = 238 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + +L+ RE L L G ++EIA+KL +S+ TV + + KL + A Sbjct: 168 ADDHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYA 227 Query: 229 IRFGYI 234 + GYI Sbjct: 228 VMHGYI 233 >gi|312138001|ref|YP_004005337.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311887340|emb|CBH46651.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 771 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSA 170 G+ P + A + + Y + D L A Sbjct: 647 GVVIPALRSNRDEARTLCEGALGARAFDTAVRRGCELTLDEVVYFAVADRLPEAAPTERA 706 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE +L G T++ IAEKL +S TV ++ KL +R Q A + Sbjct: 707 ASDLTPREQEVAELVAQGLTNKAIAEKLVISQRTVQGHVEHVLAKLGFNSRTQIAAWVVE 766 Query: 231 FG 232 G Sbjct: 767 RG 768 >gi|298247821|ref|ZP_06971626.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550480|gb|EFH84346.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + A +V+ L L S + LTERE + L A +G + +IA Sbjct: 105 DAPSAQLATAVRRAMAGERVVDPTLALS-ALSEGSNPLTERERTVLAAATEGASIAQIAA 163 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 KL LS TV YL A KL NRI+A KA + G++ Sbjct: 164 KLFLSEGTVRNYLSVAIQKLGVRNRIEAARKAEQKGWL 201 >gi|258652794|ref|YP_003201950.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556019|gb|ACV78961.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 562 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 56/210 (26%), Gaps = 7/210 (3%) Query: 27 RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86 R A +L ++ I D L Sbjct: 349 LAGHRGPAYGRAPVLRALVDVAVEAHDLDRARGACAELSQIARRWGSDGLLAAAAQADGV 408 Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE-V 145 + + + R P+ R + + E Sbjct: 409 VAVAGGRPADAVAPLRDAVARWRELEAPYDC----ARTRTVLAEALAALGDNSSARLERQ 464 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E + D L + A LT RET L L G T+ ++A+ L +S Sbjct: 465 AAERTLTVLGAVVDLRRLAGGPGTTASPGGLTARETEILALVARGDTNRQVAQALVISEK 524 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV +L + KL R A+A A R G Sbjct: 525 TVARHLANVHRKLGVSTRTAAVAWARRNGL 554 >gi|239928142|ref|ZP_04685095.1| LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 180 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + L+ RE L+ ++EEIA L +SV+TV +L SA KL Sbjct: 107 ARHAHRPPPVVEELSGRERDVLRRLALMMSTEEIAADLYVSVNTVKTHLKSAYRKLSVSR 166 Query: 221 RIQAIAKAIRFGYI 234 R +A+ +A G + Sbjct: 167 RNEAVRRARELGLL 180 >gi|254523232|ref|ZP_05135287.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720823|gb|EED39348.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 216 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 36/76 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F + ERE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 141 RARYRFHDEAPPTDTFGEREVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGT 200 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 201 RDRTRAVLKAITLRII 216 >gi|330468505|ref|YP_004406248.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032] gi|328811476|gb|AEB45648.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032] Length = 192 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+ A +G +EIA +L L+ TV +L + K NR++A+ +A Sbjct: 127 PPGSPLTRREAEVLRAAAEGLPLKEIARRLFLAHGTVRNHLSAVMRKTGTRNRMEAVWQA 186 Query: 229 IRFGYI 234 R G+I Sbjct: 187 RRHGWI 192 >gi|296131220|ref|YP_003638470.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296023035|gb|ADG76271.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 201 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 1/98 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 T+ + D + A +L+ RE+ + Sbjct: 70 GGSAARRTAPRRDVTPSARYRLT-LSTVARDDAPPAPHRGHDAVADLSPRESQVMACVAR 128 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 G + EIA +LG++V TV ++ KL R++A+ Sbjct: 129 GMRNTEIAAELGVTVKTVKNHVNRIFGKLGVDGRVEAV 166 >gi|255606123|ref|XP_002538507.1| Response regulator gacA, putative [Ricinus communis] gi|223511807|gb|EEF23876.1| Response regulator gacA, putative [Ricinus communis] Length = 268 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 38/75 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L+ + + + L+ RE +L +G +E+IA+ L LSV TV Y + KL Sbjct: 192 ALQTLEDKGDPMQQLSAREFEIFRLLAEGKETEDIAQALKLSVKTVANYQTTIKQKLGIT 251 Query: 220 NRIQAIAKAIRFGYI 234 + ++ + AIR G I Sbjct: 252 SPVEMVRLAIRHGVI 266 >gi|221638139|ref|YP_002524401.1| response regulator receiver protein [Rhodobacter sphaeroides KD131] gi|332560166|ref|ZP_08414488.1| LuxR family protein [Rhodobacter sphaeroides WS8N] gi|221158920|gb|ACL99899.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] gi|332277878|gb|EGJ23193.1| LuxR family protein [Rhodobacter sphaeroides WS8N] Length = 187 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 49/179 (27%), Gaps = 14/179 (7%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 +Y D + D + S W + E+ Sbjct: 23 SYREDWIEYYTEKGYVIYDPTIRWALSETGHRRWSDLAEQDSRG-----VFAAAAQFDLR 77 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 G+ F + + + + F L + LT Sbjct: 78 FGVTCS-WGTRESRSLGSFARSDREFTDREV-------ELIFSLFQRLHELTQPPQE-LT 128 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + L+ G A KLG+S + A + SA +L A +AI +A + I Sbjct: 129 QPQIEALRCIAGGDRHAAAAMKLGISESALKARIASARQRLGARTTAEAIQRAKEYRLI 187 >gi|218129118|ref|ZP_03457922.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697] gi|217988753|gb|EEC55072.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697] Length = 192 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +L+ RE L L G ++EIA+KL +S+ TV + + KL + Sbjct: 121 TPDNHDLSAREIEVLALITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIY 180 Query: 228 AIRFGYI 234 A+ GY+ Sbjct: 181 AVMHGYV 187 >gi|299134073|ref|ZP_07027266.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298590820|gb|EFI51022.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 225 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 156 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIVAAK 212 >gi|239944489|ref|ZP_04696426.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239990948|ref|ZP_04711612.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 1049 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L G+T+ +IAE+L +S T + ++ + KL +R +A A A R Sbjct: 985 GLTPREQDVHRLVAAGHTNRKIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRLR 1044 Query: 233 Y 233 Sbjct: 1045 L 1045 >gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 242 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + T RE S LQL +G ++EIA KL S+ V Y+ +K +R + + A+ Sbjct: 179 PSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALEN 238 Query: 232 GYI 234 + Sbjct: 239 HLV 241 >gi|111224247|ref|YP_715041.1| LuxR family transcriptional regulator [Frankia alni ACN14a] gi|111151779|emb|CAJ63499.1| Putative LuxR-family transcriptional regulator (partial) [Frankia alni ACN14a] Length = 137 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 4/129 (3%) Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV----IIEAHGACYQVITDFLELFK 165 PF P + + E L L+ ++ + Y ++ Sbjct: 8 RASGPFTTENQPTDARTQRERVRLAQIELLELSAQLTTPHLRRQILRIYSLLRSEPVTQS 67 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L G ++ E AE+L + TV Y+ S K+ NR A+ Sbjct: 68 PAKPPPFRLTLREMEVLTLVATGCSNVEAAEQLTIRAETVKTYMRSIMRKMGVRNRTAAV 127 Query: 226 AKAIRFGYI 234 A + G + Sbjct: 128 HTARQIGLL 136 >gi|56479349|ref|YP_160938.1| LuxR family DNA-binding response regulator [Aromatoleum aromaticum EbN1] gi|56315392|emb|CAI10037.1| DNA-binding response regulator, LuxR family [Aromatoleum aromaticum EbN1] Length = 215 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 33/63 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +T RE LQL +GYTS IA++L L+ TV + + KLD + + AIR Sbjct: 148 APRITARERQVLQLIAEGYTSTRIADRLHLAPSTVEVHRRNIMRKLDLHSVAELTKYAIR 207 Query: 231 FGY 233 G Sbjct: 208 SGI 210 >gi|298283596|gb|ADE09301.2| transcriptional regulator AsaR [Aeromonas salmonicida subsp. achromogenes] Length = 149 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 2/137 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S+ + LI + Y + ++ + + Sbjct: 14 TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + LPI W + E ++ +RL GI+FP+ +NG Sbjct: 74 ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMRLAAEFGLRNGISFPLHGAAGENG 133 Query: 131 YVIFTSEFLMLANEVII 147 + F + + ++++ Sbjct: 134 ILSFITPER-ASRDLLL 149 >gi|323525472|ref|YP_004227625.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382474|gb|ADX54565.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 292 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 29/230 (12%) Query: 11 SSSLQELSPRLHLIQNRIKA-RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + L L I + + L L+ + ++ L+ Sbjct: 10 AERRDGLKALLRQINRLARFNEGQDWRQVERTLKRQWPDLLVIDWQDWMS--VKDVRHLL 67 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 Y D + + P + + +E V + + + A + + + Sbjct: 68 SHYPDLRIAVLTDKISPKVVGELMDEGVRGVVARETDPCL---IVRAFEMVLLGGHYVPS 124 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQL 184 G + L + I +K R L+ R+ ++ Sbjct: 125 GALPL---NPPLPADTAIR-------------PFDEKNPPPRRARLSNGLSPRQEQIMRC 168 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ IA LG+S TV +L S +L A NR A+ A+ G++ Sbjct: 169 VHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216 >gi|239987130|ref|ZP_04707794.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 242 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G+ ++ IAE+L +S TV ++ A KL A +R Q + Sbjct: 171 AERLAALTGREREVLVQVAGGHPNDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 230 Query: 228 AIRFGYI 234 A G + Sbjct: 231 AYESGLV 237 >gi|213616370|ref|ZP_03372196.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 109 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A ++ + ++ D+L + S + L+ R+ LQ+ G ++++ Sbjct: 11 PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 70 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +LD NR QA Sbjct: 71 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 104 >gi|158317367|ref|YP_001509875.1| ATP-dependent transcription regulator LuxR [Frankia sp. EAN1pec] gi|158112772|gb|ABW14969.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. EAN1pec] Length = 1383 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A L+ERE + L T+ EIA ++ +SV+TV +L S KLD R A Sbjct: 1314 EHRPEPAERLSERELAVLSYLPTMLTTAEIAAEMYVSVNTVKTHLKSIYRKLDVARRRDA 1373 Query: 225 IAKAIRFGYI 234 + +A + Sbjct: 1374 VHRARALHLL 1383 >gi|159044443|ref|YP_001533237.1| putative response regulator receiver protein [Dinoroseobacter shibae DFL 12] gi|157912203|gb|ABV93636.1| putative response regulator receiver protein [Dinoroseobacter shibae DFL 12] Length = 204 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 AR L+ERE L G +++EIA +L L T+ ++ + K+DA NR Sbjct: 134 ETPDIPLARQLSEREHQVLGGLCRGLSNKEIARELDLQEVTIKLHVKTLCRKIDAKNRTH 193 Query: 224 AIAKAIRFGY 233 A G Sbjct: 194 AAMIGKEAGL 203 >gi|261880311|ref|ZP_06006738.1| transcriptional regulator [Prevotella bergensis DSM 17361] gi|270333001|gb|EFA43787.1| transcriptional regulator [Prevotella bergensis DSM 17361] Length = 318 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + NL+ RE + G T++EIA+ L +S++TV + + KL + Sbjct: 245 PGSQENLSGREKDVIIALVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIY 304 Query: 228 AIRFGYI 234 AI + Sbjct: 305 AIVNNLV 311 >gi|254500296|ref|ZP_05112447.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222436367|gb|EEE43046.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 246 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA--IRF 231 LT ++ L + +G +++IA +L +S TV A++ + KL +R QA+ A I Sbjct: 172 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASKIEA 231 Query: 232 G 232 G Sbjct: 232 G 232 >gi|110680738|ref|YP_683745.1| LuxR family DNA-binding response regulator [Roseobacter denitrificans OCh 114] gi|109456854|gb|ABG33059.1| DNA-binding response regulator, LuxR family, putative [Roseobacter denitrificans OCh 114] Length = 204 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ RE L +G +++EIA L L T+ ++ + KLDA NR QA A Sbjct: 141 TKKLSRREKQVLSGLCNGKSNKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARN 200 Query: 231 FGY 233 G+ Sbjct: 201 AGF 203 >gi|146301956|ref|YP_001196547.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] gi|146156374|gb|ABQ07228.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] Length = 251 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L++ G S+EIA L +S +TV+ + + K+ N +A A++ + Sbjct: 191 LSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAEACTLAVKLKW 250 Query: 234 I 234 I Sbjct: 251 I 251 >gi|78357716|ref|YP_389165.1| two component LuxR family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220121|gb|ABB39470.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 215 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ ++ RE L+L G ++EIA +L +S TV + S KL + + Sbjct: 147 ANPIDTISVREKQVLKLIARGMGNKEIAAELCISHKTVEKHKASLKRKLRVNSNAEMATL 206 Query: 228 AIRFGYI 234 ++ +G + Sbjct: 207 SMEYGLL 213 >gi|15598616|ref|NP_252110.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9949559|gb|AAG06808.1|AE004763_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 827 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193 L + ++ +LF L+ RE + L L G +++E Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I E+L +S+HTV + KL R QA+A+A G + Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826 >gi|298244512|ref|ZP_06968318.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551993|gb|EFH85858.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1045 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ +E LQ G+T++EIA++L +SV+TV ++ KL NR+QA A Sbjct: 981 PFEPLSPQEQRVLQFLVAGHTNQEIAKELVISVNTVKDHVKHLYRKLGVSNRLQAYEAAH 1040 Query: 230 RF 231 Sbjct: 1041 HL 1042 >gi|56461106|ref|YP_156387.1| response regulator [Idiomarina loihiensis L2TR] gi|56180116|gb|AAV82838.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina loihiensis L2TR] Length = 210 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 35/70 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ + LT ++ L +G +++IA +LG++ TV A++ + KL +R Q Sbjct: 141 DQQLAQKVSELTPQQYRVLHFLHEGLLNKQIAYQLGITEATVKAHITAIFRKLGVYSRTQ 200 Query: 224 AIAKAIRFGY 233 A+ A R Sbjct: 201 AVLVAERLQL 210 >gi|73749249|ref|YP_308488.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660965|emb|CAI83572.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] Length = 238 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 28/60 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L E+E L L GY++++I KL + TV Y+ + KL NR Q A G Sbjct: 178 LNEKEKIILHLLAKGYSNKDIGHKLEYTPSTVKKYVYNCMKKLGVSNRTQLAILANNNGL 237 >gi|300723489|ref|YP_003712794.1| putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) [Xenorhabdus nematophila ATCC 19061] gi|297630011|emb|CBJ90646.1| putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) [Xenorhabdus nematophila ATCC 19061] Length = 219 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L ++ + L+ERE + + G EI+ L LS TVN+Y KL+ Sbjct: 133 MALNQLLPQKENPLDGLSERELQIMTMITQGRKVNEISTLLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 IKGDVELTHIAIRCGLL 209 >gi|293115534|ref|ZP_06604529.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM 2876] gi|292809348|gb|EFF68553.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM 2876] Length = 211 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +TE+E ++L DG +++EIA +L L TV Y S KL+ +R Q + Sbjct: 151 GKGITEKEFEIIKLVADGLSNKEIASRLYLGEGTVRNYFSSILDKLELRDRTQLVVY 207 >gi|229070683|ref|ZP_04203919.1| Two-component protein Kinase [Bacillus cereus F65185] gi|228712450|gb|EEL64389.1| Two-component protein Kinase [Bacillus cereus F65185] Length = 581 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + S A LT RE LQL G IA +L LS TV Sbjct: 494 QGMSHKIFEKFDEQKETPQSKAAVYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 553 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 554 YASTAYTKLGVCNKEEAVQKALEIGII 580 >gi|111221722|ref|YP_712516.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111149254|emb|CAJ60939.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 181 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 160 FLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + L + + LT++E L+L +G T+ +IA ++ L+ TV Y+ S KL Sbjct: 106 LVRLREGPAEDERLAGLTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLAKLG 165 Query: 218 AVNRIQAIAKAIRF 231 +R QA A R Sbjct: 166 LESRTQAAVFATRL 179 >gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 222 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 31/57 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE L+ G T+++IA+ L LS TVN +L VKL R A + A+ Sbjct: 160 QLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216 >gi|298248902|ref|ZP_06972706.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546906|gb|EFH80773.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G S+EI +LG++ TV +YL S KL+ +R A+A AI G Sbjct: 157 QLTEREQEVLAGIAAGERSKEIGARLGITRRTVESYLNSIYTKLNVDSRAAAVAVAIERG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|268609438|ref|ZP_06143165.1| two component LuxR family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 209 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++ + A+ ++++E L+L +G +++EI+ +L LS TV Y+ S KL Sbjct: 131 LPELMKPKSDFNYASYGISDKEKEILELVAEGKSNKEISSELFLSEGTVRNYISSLLDKL 190 Query: 217 DAVNRIQAIAK 227 +R Q Sbjct: 191 SLRDRTQLAVF 201 >gi|34540945|ref|NP_905424.1| LuxR family transcriptional regulator [Porphyromonas gingivalis W83] gi|34397260|gb|AAQ66323.1| transcriptional regulator, LuxR family [Porphyromonas gingivalis W83] Length = 199 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + + + E ++ LE + + LT RE + G T++EIAE Sbjct: 96 DDTLSVHATVEELKQLLERLYQKTLEPEE-SGEEQQTLTNREKEIVVGVVKGMTNKEIAE 154 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS HTV + + KL + AI + Sbjct: 155 ELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKLV 192 >gi|87122198|ref|ZP_01078081.1| response regulator GacA [Marinomonas sp. MED121] gi|86162518|gb|EAQ63800.1| response regulator GacA [Marinomonas sp. MED121] Length = 197 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ + + S +L++RE Q+ D ++IAEKL LS TVN Y Sbjct: 110 VAQKMALSQMSKEEGESP-LDSLSDRELQIAQMIVDCRKVQDIAEKLNLSAKTVNTYRYR 168 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL + ++ A+R + Sbjct: 169 LFEKLSIGSDVELARLAMRHNLL 191 >gi|329946343|ref|ZP_08293910.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328527319|gb|EGF54317.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 232 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + L++RE + L G ++ EIA+ L L+ T+ ++L KL+ Sbjct: 153 SVRRADAVHTESIGALSDREKEIVTLVGRAMSNAEIAQHLVLAESTIKSHLNRILHKLEL 212 Query: 219 VNRIQAIAKAIRFGYI 234 +R Q I A G + Sbjct: 213 RDRAQLIVLAYESGLV 228 >gi|307941458|ref|ZP_07656813.1| glycerol metabolism activator [Roseibium sp. TrichSKD4] gi|307775066|gb|EFO34272.1| glycerol metabolism activator [Roseibium sp. TrichSKD4] Length = 228 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +L +S TV A++ + KL +R QA+ A R Sbjct: 152 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASR 208 >gi|255535277|ref|YP_003095648.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] gi|255341473|gb|ACU07586.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] Length = 226 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 156 VITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 VI D L L + A + L+ RE L+L +++E+I E+L +S TV A+ + Sbjct: 140 VIMDNLMLPEDLMDAKDDNKPVLSGRELEVLKLIAKEFSNEQIGEQLFISERTVEAHRRN 199 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 +K + + I AI G + Sbjct: 200 IFMKTKTKSIVGLIKYAITEGIV 222 >gi|254294922|ref|YP_003060945.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Hirschia baltica ATCC 49814] gi|254043453|gb|ACT60248.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Hirschia baltica ATCC 49814] Length = 905 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 36/80 (45%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q ++ L ++R A LT E L +G +++EIA +S +TV L S Sbjct: 820 QTVSKALSQRRRRDDAEGALTSGELEILNYLNNGLSNKEIARLTSISPNTVKFRLKSVFK 879 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD R A+ A G + Sbjct: 880 KLDVSKRRDAVMIAREKGLV 899 >gi|116694767|ref|YP_728978.1| LuxR family transcriptional regulator [Ralstonia eutropha H16] gi|113529266|emb|CAJ95613.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16] Length = 901 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L++ GY + IA+KL LS TV ++L KL A +R +A+A Sbjct: 838 DPLTGRELEVLRMLSAGYRNRVIAQKLFLSELTVKSHLRRIHAKLGAQSRTEAVALGRAR 897 Query: 232 GYI 234 G I Sbjct: 898 GLI 900 >gi|86740943|ref|YP_481343.1| ATP-dependent transcription regulator LuxR [Frankia sp. CcI3] gi|86567805|gb|ABD11614.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. CcI3] Length = 914 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 145 VIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ AH + + ++ + L RE L+L G +++EIA LGL+++ Sbjct: 823 LLATAHADAERAAIPIIDRPAERNPAPEEPLNAREIDILRLLDRGLSNKEIARNLGLTIN 882 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV YL S KL R +++++A R + Sbjct: 883 TVKWYLKSIYTKLGVARRGESVSEARRRRIL 913 >gi|881487|gb|AAA68948.1| GacA [Pseudomonas aeruginosa PAO1] Length = 213 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAARN 173 FP RL GY+ + E ++ A + I L L ++ S + Sbjct: 89 FPTRLMQAGAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDS 148 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + + + + I++KL LS TVN Y KL + ++ A+R G Sbjct: 149 LSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGM 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|115523030|ref|YP_779941.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516977|gb|ABJ04961.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 221 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 152 ACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 QVI + ++R++ A L+ RE ++L G T++EIA + +S TV Y+ Sbjct: 130 FATQVIAALRDTSLRRRAAEAVKLSIREQQIVRLLLKGKTNKEIAHAISISDKTVKHYMT 189 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 KL NR++ + A + Sbjct: 190 ILMQKLQVRNRLEVVIAAQKL 210 >gi|302039113|ref|YP_003799435.1| putative sensory transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] gi|300607177|emb|CBK43510.1| putative Sensory transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 235 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A L ERE L+ G + ++IA+ L +S TV ++ KL A +R+QA+A A Sbjct: 166 PALLPLGEREREILRGLAAGKSGKDIADLLCISPVTVRNHIQHILEKLGAHSRLQALAIA 225 >gi|295700518|ref|YP_003608411.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439731|gb|ADG18900.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 223 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 12/131 (9%) Query: 115 FAGIAFPV--RLGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFK 165 AG+ PV G+ + + L +++A + + LE + Sbjct: 86 NAGLGIPVVFITGYGDVASSVTAMKGGALDFLTKPFEDHELLDAIQRAFAIDKQRLERER 145 Query: 166 KRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + A +LT RE + L G +++IA L L TV + K+ A Sbjct: 146 SLAEVSRAHESLTPREREVMTLVISGLMNKQIAATLNLQEITVKVHRSQVMKKMKARTLP 205 Query: 223 QAIAKAIRFGY 233 + A G Sbjct: 206 DLVRMAEALGI 216 >gi|229107368|ref|ZP_04237236.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228676097|gb|EEL31074.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 194 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E LQL DGY +EIA L S T++ ++ KLD + ++A+ K I+ Sbjct: 128 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHIFDKLDVSSSLEAVTKGIKS 187 Query: 232 GYI 234 GYI Sbjct: 188 GYI 190 >gi|269125504|ref|YP_003298874.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310462|gb|ACY96836.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 203 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D + + S A L+ RE + L G ++ EIA +L LS TV ++ KL Sbjct: 111 DLIRALRDASRARHGLSAREAEVMDLIATGRSNGEIARQLFLSEKTVKNHVNRIYAKLGV 170 Query: 219 VNRIQAIAK 227 +R AIA Sbjct: 171 TSRASAIAL 179 >gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 227 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 73/223 (32%), Gaps = 8/223 (3%) Query: 14 LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + +Q ++ F + + + + +++ + + + D L + Sbjct: 8 VDDEPGLREAVQAYLEDSGFTVDVASNAKAGWELLQQRIPDLVISDIMMPEVDGYQFLAQ 67 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D ++ + + + ++ + + + L P +A L K Sbjct: 68 LREDP--RFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLLTRKEA 125 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + + E ++ + + + T RE S L L G Sbjct: 126 KDANATTDIADLANQVAEIRAI---LMNRAPLPTQNTPTVKIDFTPREQSVLDLVAVGLM 182 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++EIA +L SV V Y+ K +R + + A+ G Sbjct: 183 NKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALENGL 225 >gi|21240910|ref|NP_640492.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106187|gb|AAM35028.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 210 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F+ + + +ERE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 135 RARYQFRDQQAPRETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGI 194 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 195 RDRTRAVLKAITLRVI 210 >gi|302532622|ref|ZP_07284964.1| two-component system response regulator [Streptomyces sp. C] gi|302441517|gb|EFL13333.1| two-component system response regulator [Streptomyces sp. C] Length = 226 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 152 ACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + L + L++RE L L DG ++ +I ++ LS T Sbjct: 124 MSPKASRALLRGHPGAGAPQDADVARVGLLSDRERDVLVLIADGLSNADIGTRIHLSQGT 183 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ S KL +R+QA A R G + Sbjct: 184 VKDHVSSILTKLRVTSRVQAALLAERAGLL 213 >gi|260187493|ref|ZP_05764967.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260205793|ref|ZP_05773284.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis K85] Length = 69 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT E L G+G +++EI +L +S TV+++L KL +R+Q +A R G Sbjct: 1 ALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 60 >gi|256824328|ref|YP_003148288.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687721|gb|ACV05523.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 244 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D +++ LTERE + G ++ EIA++L ++ T+ ++G KL Sbjct: 151 VADVASPAEQQEYLREVLTEREYEVFEAVAAGLSNTEIAKELFVAEATIKTHIGRLLFKL 210 Query: 217 DAVNRIQAIAKAIR 230 +R+Q + A Sbjct: 211 GCRDRVQLVITAYE 224 >gi|188575417|ref|YP_001912346.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519869|gb|ACD57814.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 204 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 9/148 (6%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + + A + H V ++ + N+ + Sbjct: 55 AAGDGHEAAWLMPPRPAAIGEARVPIHALGTTHGMLCVAWSEDRPAPGNDDVQALQAFAL 114 Query: 155 QVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + E K+ + R L++RE L L G T+ +A +LG++ TV Sbjct: 115 LLPAMVAEPAKQIPTRRRKPLQDDRLGALSKREKQVLSLLPRGLTNASLAAELGIAPGTV 174 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + KL+ +R QA A++ Sbjct: 175 KVQVERILQKLEVKDRTQAAVYAVQSRL 202 >gi|78065985|ref|YP_368754.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77966730|gb|ABB08110.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 263 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 65/242 (26%), Gaps = 29/242 (11%) Query: 8 GKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 G+ SL + + LI+ + ++ + P+ Sbjct: 15 GRLIESLDQPGFWLALIRLIEEYVAVDSWV--ALTFGDGRPQVFAECPYEGGGPDPLFRD 72 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D F +++ + + + F V L Sbjct: 73 YVQGLYQL-DPFYIANRDAPKSGLFRLSDVAPECFRDTEYYTLYFTHNVVEDEVQFNVVL 131 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFK--------KRSSAAR- 172 + + + E + ++ L +R A Sbjct: 132 DDARTLCLSL-GSKRRFSPEQVALLDLIRPWVAGLMRQRLAFEPASADHAPPRRPGAHDG 190 Query: 173 ----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE ++L G +++E+A KL +S TV + + KL ++ Sbjct: 191 FEQAMARLGTPLTARELDVIRLILSGRSNKEVANKLAISAETVKVHRRNIYGKLAINSQS 250 Query: 223 QA 224 + Sbjct: 251 EL 252 >gi|145221325|ref|YP_001132003.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315441791|ref|YP_004074670.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] gi|145213811|gb|ABP43215.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315260094|gb|ADT96835.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] Length = 214 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++ L+ RE L L G T +A +L L+ TV ++ KL +R Sbjct: 141 EIRRRAEPEGPALSPREREVLVLIAAGSTIPAMARELFLAPSTVKTHVQRLYEKLGVSDR 200 Query: 222 IQAIAKAIRFGYI 234 A+A+A+R + Sbjct: 201 GAAVAEAMRRKLL 213 >gi|333027714|ref|ZP_08455778.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332747566|gb|EGJ78007.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 222 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + +L+ S+ LT RE L G +++EI Sbjct: 118 AAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAALTGREREVLVQVAAGLSNDEI 177 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L +S TV ++ A K+ A +R Q + A G + Sbjct: 178 AARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 217 >gi|283787837|ref|YP_003367702.1| transcriptional regulator [Citrobacter rodentium ICC168] gi|282951291|emb|CBG90987.1| transcriptional regulator [Citrobacter rodentium ICC168] Length = 199 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 28/54 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ R+ L + G +++EI L +S TV A+L S +LD NR QA Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAAML 195 >gi|238059977|ref|ZP_04604686.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881788|gb|EEP70616.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 232 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Query: 135 TSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 +LA V+ ++ + ++ LT RE L L G G ++ Sbjct: 119 ARGEPLLAPSVLARVVDRARRSHAADRNGDIEQPDTAVLAALTARERDVLSLVGVGLSNA 178 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L + V TV ++ + KL NR+QA A R G + Sbjct: 179 EIARDLNVGVTTVKTHIVALLEKLGIRNRVQAGILAHRLGLV 220 >gi|291287073|ref|YP_003503889.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290884233|gb|ADD67933.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 193 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L G TS EI E L +S +TV+ + KL+ N + A G Sbjct: 132 SLTSRECEILKLIASGKTSREIGEMLCISKNTVDTHRNKMLQKLNLANSASLVHYAFVSG 191 Query: 233 YI 234 + Sbjct: 192 LV 193 >gi|168699466|ref|ZP_02731743.1| two-component response regulator [Gemmata obscuriglobus UQM 2246] Length = 220 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARN--LTERETS 180 L GY + T+ L I A +VI L ++ A L+ RET Sbjct: 96 LAAGAAGYFLKTTPSPDLLA--AIRAVATGARVIDPALGDVLGGPPPPAERSQLSRRETE 153 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T +EIA++L LSV TV Y K R + + G + Sbjct: 154 VLELLVKGLTHQEIADQLFLSVKTVETYRARLREKTGLKTRADYVRYGLEAGLL 207 >gi|57234151|ref|YP_181859.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224599|gb|AAW39656.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 247 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L + GYT++EI+ + + T+ Y+ S KL+ NR A A+ Sbjct: 183 PQDVLSPRELEILIMVARGYTNKEISVNMDYAEITIKKYVKSILSKLNVSNRTLAGIAAV 242 Query: 230 RFGYI 234 +FG + Sbjct: 243 KFGLV 247 >gi|326388719|ref|ZP_08210310.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206793|gb|EGD57619.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 217 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ LT + L +G +++IA LG+S TV A++ + KLD NR QA Sbjct: 145 ERVRGTVAGLTPTQLKVLLAVLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQNRTQA 204 Query: 225 IAKAIRFGY 233 A G Sbjct: 205 ALAARSLGL 213 >gi|325109956|ref|YP_004271024.1| LuxR family transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324970224|gb|ADY61002.1| two component transcriptional regulator, LuxR family [Planctomyces brasiliensis DSM 5305] Length = 231 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + + A L+ R+ L+ G+T +E+A + LSV +V+++ Sbjct: 150 HYLDEMSHGSHTGGTPAETLSVRQKEVLRYLALGHTVKEVAAMMHLSVKSVDSHKYRIMK 209 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KLD +R+ AIR G Sbjct: 210 KLDLHDRVHLARYAIREGL 228 >gi|289644902|ref|ZP_06476947.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505287|gb|EFD26341.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 222 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 15/155 (9%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----------EFLM 140 + S + + + I L+ Sbjct: 55 LDARLEDGSGIDVCRDIRSAHPQVGCLILTSYDDDDALFASIMAGAAGYLLKQIKGTDLV 114 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAE 196 A I +T + + A + L+ERE L L +G T+ +IA Sbjct: 115 GAIHTIASGRSLLDPAVTQKVLARLREGPAEDSRLATLSEREREILLLIAEGLTNRQIAS 174 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++ LS TV Y+ + KL+ +R QA A + Sbjct: 175 RIHLSDKTVKNYVSAILDKLELTSRTQAAVYATKL 209 >gi|283138029|gb|ADB12476.1| NirZ [Methylomonas sp. 16a] Length = 202 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S A L+ERE QL G + +IA L +S+ TV+ + + +KL+ + Sbjct: 135 LVTRPSPALDRLSERELEIYQLLVKGTSVSDIARTLNISIKTVSTHKSNLMLKLNVDSIA 194 Query: 223 QAIAKAIR 230 + ++R Sbjct: 195 DLVRFSMR 202 >gi|311234756|gb|ADP87610.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris RCH1] Length = 250 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +R+ LT RE L +G+ + EIA+ L +S TV + + KL + Sbjct: 167 ALEDRRTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSA 226 Query: 222 IQAIAKAIRFGY 233 + A A R G Sbjct: 227 AEVRAFAQRQGL 238 >gi|169828201|ref|YP_001698359.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168992689|gb|ACA40229.1| comA, srfB, comAA; two-component response regulator. potential cognate sensor kinase is comP [Lysinibacillus sphaericus C3-41] Length = 208 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+++E LQL G T++ IA +G++ TV YL VKL+ +R +A+ A + Sbjct: 147 LSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVAKEKAW 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|186470967|ref|YP_001862285.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197276|gb|ACC75239.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 231 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 7/139 (5%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--- 156 S + + + V + V + ++ E+ + A + Sbjct: 89 SEDEQDLAAALRGGARGYLLKTVDSSAMADAIVRIMAGESTISPEMTGKLVSAFQALQPG 148 Query: 157 ----ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L +L+ R+ L G T++EIA L ++ TV ++ Sbjct: 149 EVPPAASPSVLAPAVPDPIESLSARQEEILAHIARGETNKEIARALNIAETTVKIHVQQV 208 Query: 213 TVKLDAVNRIQAIAKAIRF 231 KL +R+QA A+ Sbjct: 209 LKKLKLASRVQAATYAVMR 227 >gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 242 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 17/230 (7%) Query: 14 LQELSPRLHLIQNRIKARNFALY-TINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70 + + +Q ++ FA+ I+ + + QQ++ + + + D +L Sbjct: 20 VDDEPGIRTAVQAYLEDEGFAVTTAIDGEEGWQKAQQIVPDVVISDVMMPRCDGYGLLKR 79 Query: 71 TYGD------DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D +F G+ I + V + + E + Sbjct: 80 LREDERLGGTPVIFLTAKGMT-IDRTQGYQAGVDDYIPKPFDPDELIARVRNVV------ 132 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + + F + + ++T + K+ N T RE S LQL Sbjct: 133 -KRQERLLTEAARFADTDVSQMAKQITEIRSMLTQGDKNNSKKDLIIPNFTPREESVLQL 191 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA KL S+ V Y+ +K +R + + A+ + Sbjct: 192 VAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENNLV 241 >gi|332304648|ref|YP_004432499.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171977|gb|AEE21231.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 212 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN-- 173 + F G++ +S +A + + ++ E+ + A+ Sbjct: 90 VVSYVMSFGAKGFIPKSSPTPTIAEALRSIMNGEVWLTDELKVQIAEIDSDEINLAQRIA 149 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT ++ L+L DG +++IA +L ++ TV A++ + KL+ R QA+ + Sbjct: 150 ELTPKQFQVLKLIHDGLLNKQIAHELNVTEATVKAHISAVFRKLEVNTRTQAVLLLKKLN 209 Query: 233 Y 233 Sbjct: 210 L 210 >gi|288926074|ref|ZP_06420002.1| transcriptional regulator, LuxR family domain protein [Prevotella buccae D17] gi|288337114|gb|EFC75472.1| transcriptional regulator, LuxR family domain protein [Prevotella buccae D17] Length = 208 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 157 ITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 D L + R+ A+ LT+RE L L G ++EI E L + + TV + + K Sbjct: 125 HADGRNLPELPRALRAKILTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEK 184 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L + A+ GY+ Sbjct: 185 LGLKSVSALTIYAVMRGYV 203 >gi|288572878|ref|ZP_06391235.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568619|gb|EFC90176.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 216 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL +G ++ EIA L LS TV + S KLD N AIR G Sbjct: 150 ELTPREWEILQLVAEGRSTREIASSLNLSAKTVENHRQSVMNKLDLHNVADLTKYAIRCG 209 Query: 233 Y 233 Sbjct: 210 L 210 >gi|256829789|ref|YP_003158517.1| two component LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578965|gb|ACU90101.1| two component transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 219 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 152 ACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ D+L + R+ NLT RE ++L DG S EIAE L +S+ TVN + Sbjct: 130 LAKIIVEDYLLVNHHRNSLPPLHNLTSREKEIVKLIIDGNKSREIAEILFISIKTVNKHR 189 Query: 210 GSATVKLDAVNRIQA 224 + VKL N + Sbjct: 190 SNILVKLGIHNLSEL 204 >gi|239815768|ref|YP_002944678.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802345|gb|ACS19412.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 213 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEI 194 + +E ++EA + E + ++A L+ERE L G T++EI Sbjct: 112 EKPVDDEQLLEALQQAVRQHVRSRERSQADNAARERVAQLSEREREVLAFIVQGLTNKEI 171 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A L LS TV + + KLD + Q I + Sbjct: 172 ARTLALSPRTVETHRANLFAKLDCDSLAQLIRR 204 >gi|254467179|ref|ZP_05080590.1| DNA-binding response regulator, LuxR family [Rhodobacterales bacterium Y4I] gi|206688087|gb|EDZ48569.1| DNA-binding response regulator, LuxR family [Rhodobacterales bacterium Y4I] Length = 231 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT ++ LQL +G +++IA L ++ TV A++ + KL +R Q Sbjct: 151 SDDVLQRLSQLTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHITAIMRKLGVQSRTQ 210 Query: 224 AIAKAIRF 231 A+ A + Sbjct: 211 AVLAAKQA 218 >gi|223938200|ref|ZP_03630096.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893072|gb|EEF59537.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 224 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL +G +++IA+ L +S+ TV + KL+ + AI G Sbjct: 156 LTAREREVLQLIAEGRANKQIADDLAISIKTVEKHRQQVMNKLNIHDVASLTRYAISKGM 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|126348096|emb|CAJ89817.1| putative LuxR-family regulator [Streptomyces ambofaciens ATCC 23877] Length = 987 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 10/155 (6%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIA-------FPVRLGFHKNGYVIFTSEFLMLA 142 + + + + G F + G + + Sbjct: 825 AEAEWARIAGAGPDPAAWQRAVAGFAHGDVYERARCRFRLAEALLAAGRREEAAAEADIV 884 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLG 199 + D L + + A LT RE L+L G ++ +I E+L Sbjct: 885 RREADRLGATLLRERLDGLARRGRLTGAREGAAVLTAREQDVLRLLALGRSNRQIGEELF 944 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S T + ++ + KLDA +R +A+A A R G + Sbjct: 945 ISAKTASVHVSNILAKLDAASRTEAVAVAYRQGLV 979 >gi|325286932|ref|YP_004262722.1| LuxR family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324322386|gb|ADY29851.1| two component transcriptional regulator, LuxR family [Cellulophaga lytica DSM 7489] Length = 215 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L + YT++EIA++L LS HT+ +Y + KL+ N AI+ G Sbjct: 152 SLTNREKEVLKLIAEEYTTQEIADELFLSKHTIESYRKNLISKLNVKNLAGLTKHAIKIG 211 Query: 233 YI 234 + Sbjct: 212 LL 213 >gi|313203941|ref|YP_004042598.1| transcriptional regulator [Paludibacter propionicigenes WB4] gi|312443257|gb|ADQ79613.1| transcriptional regulator [Paludibacter propionicigenes WB4] Length = 201 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + G T++EIA+ L LS HTV ++ + T KL+ + AI Sbjct: 133 LSAREKEIIICVVKGLTNKEIAQTLFLSTHTVISHRRNITRKLEIHSTAGLTVYAIMNKL 192 Query: 234 I 234 I Sbjct: 193 I 193 >gi|290963130|ref|YP_003494312.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260652656|emb|CBG75789.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 219 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 11/106 (10%) Query: 140 MLANEVIIEAHGACYQ-----------VITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++IEA A + + L + LTERE +L G Sbjct: 111 DAPPSLLIEAVRAAARGDALVSPAVTVRLLKHLSPTRPDPDVGSVLTERERDVARLVAVG 170 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T++EI ++L +S+ TV +L + K+DA NR++ A A G + Sbjct: 171 RTNQEICDRLVVSLSTVKTHLANIQQKIDARNRVEIAAWAWEQGVV 216 >gi|302518606|ref|ZP_07270948.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302427501|gb|EFK99316.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 226 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + +L+ S+ LT RE L G +++EI Sbjct: 122 AAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAALTGREREVLVQVAAGLSNDEI 181 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L +S TV ++ A K+ A +R Q + A G + Sbjct: 182 AARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 221 >gi|89274998|gb|ABD65961.1| two-component system response regulator [Streptomyces fungicidicus] Length = 223 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + + + ++ + L+ R ++ G T++EIA +L +S+ TV ++L Sbjct: 135 LRLLKHLNESQAMPRGGAARSSELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLS 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL NR + A + Sbjct: 195 GIQTKLGVRNRTEIAVWAWENRVV 218 >gi|111220995|ref|YP_711789.1| LuxR family transcriptional regulator [Frankia alni ACN14a] gi|111148527|emb|CAJ60198.1| Putative LuxR-family transcriptional regulator [Frankia alni ACN14a] Length = 1436 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +A L++RE + L T+ EIA +L +SV+TV +L S KLD Sbjct: 1360 EPARRRPGGGPAAGDRLSDRELAVLSYLPTMLTTAEIAAELYVSVNTVKTHLKSIYRKLD 1419 Query: 218 AVNRIQAIAKAIRFGYI 234 R A+ +A + Sbjct: 1420 VPRRRDAVHRARELHLL 1436 >gi|310821461|ref|YP_003953819.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309394533|gb|ADO71992.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca DW4/3-1] Length = 218 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + F L K + N LT E L+ G ++ E+ E + L TV + Sbjct: 131 IAKRFWNYFHSLQAKPAGKPENPWGLTPAEFEVLRYVAKGLSNAEVGEVMTLERRTVRTH 190 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L K+ + ++A+ A++ G + Sbjct: 191 LSHIYRKMGVNSHVEAVVLALKAGVV 216 >gi|302539397|ref|ZP_07291739.1| two component transcriptional regulator [Streptomyces sp. C] gi|302448292|gb|EFL20108.1| two component transcriptional regulator [Streptomyces sp. C] Length = 220 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLA 185 G + ++ + A +++ F +L R +T RE L Sbjct: 108 DTGPDLLAQAVRSASDGEALIAPSVTVRLLRAFADLPAGRPVAQPVSPVTAREEQVLLAV 167 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G T+ EIA+ L +S+ TV +L S KL A NR++ A Sbjct: 168 ARGLTNTEIADALRISLSTVKTHLASLMAKLGARNRVEIAMWAYE 212 >gi|226362289|ref|YP_002780067.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240774|dbj|BAH51122.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 75 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE L G ++ IA +LG+S TV ++ S KLD NR +A A IR G Sbjct: 4 LNPRELEVLAHLTVGKRNKAIASELGISESTVKFHVASVLQKLDVTNRGEAGAIGIRAGI 63 >gi|71282148|ref|YP_268761.1| LuxR family DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71147888|gb|AAZ28361.1| DNA-binding response regulator, LuxR family [Colwellia psychrerythraea 34H] Length = 208 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + LT+RE L L DG S+ IA +L LS T++++ Sbjct: 125 FVSPSLAQEMAWMEDDSQKTDSLLTKREEEVLILIADGLGSDAIALRLDLSKRTIDSHRA 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N ++ AI G I Sbjct: 185 NIRKKLGLTNSVELTRYAIEQGLI 208 >gi|45443119|ref|NP_994658.1| two-component system response regulator [Yersinia pestis biovar Microtus str. 91001] gi|45437986|gb|AAS63535.1| response regulator [Yersinia pestis biovar Microtus str. 91001] Length = 257 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT RE L +G EIAE LGLS TV+ + + KL N ++ K Sbjct: 196 AVDPLTRREREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 253 >gi|325964344|ref|YP_004242250.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470431|gb|ADX74116.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 28/219 (12%) Query: 14 LQELSPRLHLIQNRIKARNFALY-----TINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 L + + +++ ++A + + + P + + L D I Sbjct: 20 LDDHELVRYGLRDLLEAEGMQVAGESGSAVEAIRRIPALRPDVAILDGRLGDGTGIEVCR 79 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + ++ + G + Sbjct: 80 EVRAIDPGISCI----------ILTSYDDDQALQGAVLAGAAGYVLKQ------------ 117 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G +A + A G + + LE +L+ +E L L G G Sbjct: 118 IGNNDLAGAIRRVARGESLFAPGVKERALNGLLEAAP-VDPRLESLSLQERKVLALVGQG 176 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+ +I ++L L+ TV Y+ + KL R QA Sbjct: 177 MTNRQIGQELFLAEKTVKNYVSAMLAKLGFERRTQAAVY 215 >gi|312888593|ref|ZP_07748162.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311298907|gb|EFQ76007.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 307 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE + + +EIAEKL +S TVN ++ + K++ R + + K Sbjct: 249 ALSPRENDVVNMICQRLRYKEIAEKLFISERTVNKHVQNIFNKVEVTTRSELVRK 303 >gi|300693797|ref|YP_003749770.1| transcription regulator for hrp genes expression [Ralstonia solanacearum PSI07] gi|299075834|emb|CBJ35143.1| transcription regulator for hrp genes expression [Ralstonia solanacearum PSI07] Length = 174 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 44/100 (44%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + + L E G + +E S+ LT R+ L+ A Sbjct: 61 EAAGELPSGQLQPLTLEQTYAMLGRILEARRHGVEPRPDTSARLSALTPRQRDILREAAH 120 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ EIA+ L +SV TV +++ ++L+A NR + A Sbjct: 121 GKSNVEIAQTLHISVETVKSHVRQILMRLEARNRTELAAI 160 >gi|251789132|ref|YP_003003853.1| response regulator [Dickeya zeae Ech1591] gi|247537753|gb|ACT06374.1| two component transcriptional regulator, LuxR family [Dickeya zeae Ech1591] Length = 220 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+++L LS TVN+Y KL+ Sbjct: 135 MALSQLEPQTETPLECLSERELQIMLMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 194 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 195 INGDVELTHLAIRHGL 210 >gi|209518476|ref|ZP_03267298.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209501109|gb|EEA01143.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 229 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---------LELFKKRSSAARNLTE 176 +GYVI + F L E+ + G L + + LT Sbjct: 99 AGADGYVIKDASFEELVGEMRLVMQGKRNPAFEQRAGNGVSCDPLPGVSRHAQLWHTLTT 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L+L +G T+ ++ E L LS T+ + S KLD N + A+ G + Sbjct: 159 RERAVLRLVAEGCTNRQVGEYLQLSPKTIEKHRASLMRKLDVTNVTGLVLIALDMGVL 216 >gi|217972053|ref|YP_002356804.1| LuxR family transcriptional regulator [Shewanella baltica OS223] gi|217497188|gb|ACK45381.1| transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 221 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 12/135 (8%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 L L GI F + ++ T M+A E+ + Sbjct: 82 ERDSLDQESAMLLGIR-GILF-----ADQRMDLMLTGLRKMVAEELWYDRTLLSKMFRRV 135 Query: 160 FLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +L + LT RE + +Q G ++EIA +L +S HTV A++ S Sbjct: 136 VQKLDGNNEMPSDTIAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIF 195 Query: 214 VKLDAVNRIQAIAKA 228 K + NR++ + A Sbjct: 196 RKTQSRNRVELLRWA 210 >gi|146343451|ref|YP_001208499.1| two-component LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196257|emb|CAL80284.1| putative two-component transcriptional regulator, LuxR family [Bradyrhizobium sp. ORS278] Length = 261 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 191 LTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 247 >gi|85059148|ref|YP_454850.1| response regulator [Sodalis glossinidius str. 'morsitans'] gi|84779668|dbj|BAE74445.1| transcription regulator [Sodalis glossinidius str. 'morsitans'] Length = 218 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQAETPFECLSERELQIMLMITRGQKVTDISEQLNLSPKTVNSYRYRIFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|120555133|ref|YP_959484.1| two component LuxR family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120324982|gb|ABM19297.1| two component transcriptional regulator, LuxR family [Marinobacter aquaeolei VT8] Length = 221 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I S +LT ++ L + +G +++IA L +S T+ A++ + KL Sbjct: 135 IERMQAETTDFSERLASLTPQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFRKL 194 Query: 217 DAVNRIQAIAKAIRF 231 NR QA+ AI+ Sbjct: 195 GVRNRTQAV-IAIQQ 208 >gi|319427568|gb|ADV55642.1| transcriptional regulator of curli operon, CsgD [Shewanella putrefaciens 200] Length = 221 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++ + Q + E+ + + LT RE + +Q G ++EIA +L +S Sbjct: 124 DRTLLSKMFRRVVQKLEGNNEMPSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCIS 183 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 HTV A++ S K + NR++ + A Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|315605040|ref|ZP_07880094.1| two component system response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313319|gb|EFU61382.1| two component system response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 216 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E+A L +S+ TV ++ + KL NR + A++ Sbjct: 154 DLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHVSAVLRKLQLSNRNELTRWAMQR 213 Query: 232 GYI 234 + Sbjct: 214 HIV 216 >gi|294012227|ref|YP_003545687.1| NarL-like response regulator [Sphingobium japonicum UT26S] gi|292675557|dbj|BAI97075.1| NarL-like response regulator [Sphingobium japonicum UT26S] Length = 219 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q + + ++A LTERE L G + EIA + GL+ TV +L Sbjct: 128 FVMEQALVHSISAPASEANALAALTERELEIAGLIRAGLRNREIASRCGLTEGTVKVHLH 187 Query: 211 SATVKLDAVNRIQAIAK 227 S KL+ +R + I Sbjct: 188 SIFQKLNIKSRSELIIM 204 >gi|271963445|ref|YP_003337641.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506620|gb|ACZ84898.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 226 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 39/86 (45%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 AH Q+ + LT RE L L G+G ++ +IA +L L TV A+ Sbjct: 130 AHRVITQLTGGRMTRVVAAREQVAALTPRERDVLALVGEGLSNGQIARRLYLVEGTVKAH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + +L A NR+QA A G + Sbjct: 190 VSAILTRLGARNRVQAAILAHEAGLL 215 >gi|261409608|ref|YP_003245849.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286071|gb|ACX68042.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 216 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 150 HGACYQVITDFLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 H + +T L + + L T E + L +G +++EIA +L LS T Sbjct: 127 HPDIARKLTGMLRPTPQPVPRSAELEQFGLTPAEKRVVALIAEGLSNKEIAAQLYLSEGT 186 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 V Y+ KL+ +R Q Sbjct: 187 VKNYVTEILGKLNLRDRTQIAIF 209 >gi|326771911|ref|ZP_08231196.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638044|gb|EGE38945.1| two-component system response regulator [Actinomyces viscosus C505] Length = 233 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + L G ++ EIA+ L L+ T+ ++L KL+ +R Q I A Sbjct: 167 DALSDREKEIVTLVGRAMSNTEIAQHLVLAESTIKSHLNRILHKLELRDRAQLIVLAYES 226 Query: 232 GYI 234 G + Sbjct: 227 GLV 229 >gi|260575093|ref|ZP_05843094.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] gi|259022715|gb|EEW26010.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] Length = 267 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 10/228 (4%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILI 69 + S+ E+ + D L + + Sbjct: 14 ARSVNEVWALSTPYYRDLGFARVNYSFTRFMTDTTLGDPADALFLTTSSPEYLRVFTRDR 73 Query: 70 ETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + W+ + + +VR + AGI Sbjct: 74 FYARTPLFHWALHNVGACTWRWVHEALAAGDLTADQAETVRSNIAMGVVAGITISFPSAA 133 Query: 127 HKN-GYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETS 180 ++ G + + + I HG + + + L + A RNLT+R+ Sbjct: 134 PRSKGGLGLIGDTCLSHDDVDDIWANHGQPLLAVANMMHLKISQLPMATRRRNLTDRQRQ 193 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ DG T+++I++ + +SV V +L A L+ QA+AKA Sbjct: 194 ALEWVADGKTTQDISQLMRISVAMVEKHLRLAREALEVDTTAQAVAKA 241 >gi|116249431|ref|YP_765272.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254081|emb|CAK12478.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 959 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 5/146 (3%) Query: 94 EETVIESSGQLSVRLEGGL--LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 E V +S +LS + G A G+ ++ ++ Sbjct: 811 WEAVAQSWAELSQPFRQAYALMQAGGAAVSAGQRAKGAGHFRRGADLAHSTGASLLGNQI 870 Query: 152 --ACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + D + A LT+RE L+L G ++ EIA L +S T + + Sbjct: 871 ETLAKKARIDLGNGKEGDMPKAPLGLTDREFEVLRLLAAGQSNREIAVNLFISSKTASVH 930 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL +R A A A R + Sbjct: 931 VSNILSKLSVPSRGAAAAMAHRLRIV 956 >gi|111021467|ref|YP_704439.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820997|gb|ABG96281.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 546 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 35/78 (44%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + F+ + + LT RE L+L G ++ +A +L LS TV +L + VKL Sbjct: 465 LERLRAEFRPDPAVSTPLTPREVCVLRLVAAGKSNRAVATELFLSEKTVARHLSNIFVKL 524 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R A A A + Sbjct: 525 GISSRSAATAYAYEHRLV 542 >gi|329928715|ref|ZP_08282564.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937496|gb|EGG33914.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 216 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 150 HGACYQVITDFLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 H + +T L + + L T E + L +G +++EIA +L LS T Sbjct: 127 HPDIARKLTGMLRPTPQPVPRSAELEQFGLTPAEKKVVALIAEGLSNKEIAAQLYLSEGT 186 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 V Y+ KL+ +R Q Sbjct: 187 VKNYVTDILGKLNLRDRTQIAIF 209 >gi|307328219|ref|ZP_07607397.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886053|gb|EFN17061.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 229 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 4/126 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + + ++ ++E + E ++ Sbjct: 98 AAVEAGACGYLLKSASGDEIASAIRSAAEGETLIPASTLVEVLARHREDARSTAEQNER- 156 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++T RE L L G + +AE+L +S TV ++ KLDA ++++A+A+ Sbjct: 157 ---LDSMTPREQEILTLMSQGLDNRAVAERLSISYATVRTHVRRILEKLDARSQLEAVAR 213 Query: 228 AIRFGY 233 A FG+ Sbjct: 214 AAEFGF 219 >gi|194289411|ref|YP_002005318.1| response regulator [Cupriavidus taiwanensis LMG 19424] gi|193223246|emb|CAQ69251.1| putative RESPONSE REGULATOR [Cupriavidus taiwanensis LMG 19424] Length = 210 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTER 177 P+ + K G + F E +E+ + TD ++R++ LT R Sbjct: 96 VPMAVSTMKRGAIDFI-EKPFDESELRALVERMLQKARTDHSTAREQRAAKDLLGKLTTR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 EQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 208 >gi|163858244|ref|YP_001632542.1| two component response regulator [Bordetella petrii DSM 12804] gi|163261972|emb|CAP44274.1| two component response regulator [Bordetella petrii] Length = 218 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 12/140 (8%) Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-------EVIIEAHG 151 SG I F G + + + + +++A Sbjct: 74 GESGLAFQEQIAKSGLRMPIVF--MTGHGDIAMTVKAMKAGAVDFLAKPFRDQDMLDAVA 131 Query: 152 ACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ L + + +A +LT RE + L G +++IA +L +S TV + Sbjct: 132 NALARDSERLAAEQSIAQLRAAHASLTPREREVMALVVSGLLNKQIAFELNVSEVTVKIH 191 Query: 209 LGSATVKLDAVNRIQAIAKA 228 G K+ A + + KA Sbjct: 192 RGQVMKKMGARSVADLVRKA 211 >gi|85858634|ref|YP_460836.1| response regulator [Syntrophus aciditrophicus SB] gi|85721725|gb|ABC76668.1| response regulator with a HTH DNA-binding domain [Syntrophus aciditrophicus SB] Length = 210 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 160 FLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LEL R L++RE + + G T EIAE+L LSV T++ Y K++ Sbjct: 134 ALELDADIRKPPHEILSDREYQVMLMLASGKTVTEIAEELCLSVKTISTYRSRILEKMNM 193 Query: 219 VNRIQAIAKAIRFGYI 234 + A++ + Sbjct: 194 KKNAELTLYAVQNHLV 209 >gi|119386291|ref|YP_917346.1| response regulator receiver protein [Paracoccus denitrificans PD1222] gi|119376886|gb|ABL71650.1| response regulator receiver protein [Paracoccus denitrificans PD1222] Length = 263 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 28/240 (11%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ L + I A + P D + Sbjct: 16 ATGTDGYGAALDRLTR-IGADFDMSCIFGFSTSKPPAVIHDGYSETVDRRALRSYLRGAY 74 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV---------RLEGGLLPFAGIAFP 121 D F +W+ + + G L+ G P Sbjct: 75 LL-DPFYAASIGATAEGLWRMRDLAPDAYYDAEFAWSQEVHPCISDQAGTLVEEIGYIIP 133 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAAR--- 172 + GF ++ A ++ + + ++ A Sbjct: 134 LSDGFAATYSLMRNRGGTCFDEAEAARLQELLPVIAASLRLHWNVSQNGEQAGGPAPDSE 193 Query: 173 --------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT + + +L G+++ IAE LG++ TV + + +L+ ++ + Sbjct: 194 EVLRAAFSALTPAQQAVTKLILRGHSNISIAENLGITEGTVKLHRYNIYKRLEISSQAEL 253 >gi|326801131|ref|YP_004318950.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326551895|gb|ADZ80280.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 223 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L + +G +++IAE LG SV T+ + + KL N + I KA++ Sbjct: 162 GLSKREKQILGMVINGKHNKDIAEVLGKSVRTIETHRFNIMKKLGVNNAVDMINKAMKEN 221 Query: 233 YI 234 I Sbjct: 222 LI 223 >gi|297622465|ref|YP_003703899.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297163645|gb|ADI13356.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 176 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEK 197 ++ I EL + S + LTERE L L G ++ I E+ Sbjct: 84 DDDAQLFKALQALRRGEIWASRELLTRTIGSLSTPQLTEREREVLGLLAQGLSNRAIGER 143 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LG+S TV ++ + K R++ A Sbjct: 144 LGISERTVKTHVANLFDKFGVRTRLELAA 172 >gi|295083862|emb|CBK65385.1| transcriptional regulator [Bacteroides xylanisolvens XB1A] Length = 203 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ L++RE + G T++EIAEKL LS+HTV + + + KL + Sbjct: 125 EEEEMDNQDTLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAG 184 Query: 224 AIAKAIRFGYI 234 AI + Sbjct: 185 LTIYAIVNKLV 195 >gi|289641921|ref|ZP_06474076.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508221|gb|EFD29165.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 371 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 69/261 (26%), Gaps = 51/261 (19%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S +L++ I L + + P + + + Sbjct: 109 SKALED--RVCEEIAANCGFARVLLSRVEDGVWRPWKVNKMIRDEPWFAAWVQREI---- 162 Query: 71 TYGDDFLFH-FNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L S P + + + V G Sbjct: 163 LLDDLVLEAELLSERRPGLVTNTADPRVHPIIRAGEATSYVVAPITPAGRVVGFLHADHG 222 Query: 125 GFH-------KNGYVIFTS------------EFLMLANEVIIEAHGACYQVITDFLELF- 164 ++ F+ E L L + + + + + E Sbjct: 223 SGGHTCDETDRDVLWAFSEGFGHLYERSVLVERLRLQRDRVRQTLAVVGAALEELTEAEI 282 Query: 165 -------------------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + LT RE L L G +++EIAE+L ++V TV Sbjct: 283 ELVTAPDDDTPVARTASSVFRSEGGLDELTAREREVLALIAGGASNQEIAEQLVITVGTV 342 Query: 206 NAYLGSATVKLDAVNRIQAIA 226 ++ KL AVNR QAIA Sbjct: 343 KTHVKHILAKLGAVNRSQAIA 363 >gi|170749447|ref|YP_001755707.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655969|gb|ACB25024.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 222 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KRSSAARNLTE 176 GY++ S L V A G + + +A L+ Sbjct: 99 AGARGYLLKRSAAEDLLRAVRAVAAGGIYLDPSVASHAMAHPATPTQGGDTEPSAEALSP 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET L+L G++++EIA + LSV ++ Y A KL R + I A G++ Sbjct: 159 RETDVLRLIAQGFSNKEIARRFDLSVKSIETYKARAAEKLGLRTRAEIIRYAAAHGWL 216 >gi|94499636|ref|ZP_01306173.1| response regulator GacA [Oceanobacter sp. RED65] gi|94428390|gb|EAT13363.1| response regulator GacA [Oceanobacter sp. RED65] Length = 215 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +L++RE + + +EI+++L LS TVN Y KLD + ++ AI Sbjct: 146 PFDSLSDREMQISIMIANCAKVQEISDQLFLSPKTVNTYRYRIFEKLDISSDVELTRLAI 205 Query: 230 RFGYI 234 RFG + Sbjct: 206 RFGIV 210 >gi|317405260|gb|EFV85592.1| LuxR family Two component transcriptional regulator [Achromobacter xylosoxidans C54] Length = 210 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARN--------L 174 L GYV+ + L + + G + + R + ++ L Sbjct: 90 LRAGATGYVLKERDDLEVLLSLRSVLRGGAPIDPFVARRIIEEMRPAPSQPATADAGETL 149 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L+L +G + EIAE+L LS +TV ++ KL +R +AI A G + Sbjct: 150 SPREGQILRLVAEGLGNREIAEQLHLSRYTVECHIKHIYRKLAVSSRTRAIHTARSRGLL 209 >gi|161505683|ref|YP_001572795.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867030|gb|ABX23653.1| hypothetical protein SARI_03859 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 217 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166 A I V G F S+ E+I H +L K Sbjct: 95 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 151 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 152 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 211 Query: 227 K 227 + Sbjct: 212 R 212 >gi|118618297|ref|YP_906629.1| putative regulatory protein [Mycobacterium ulcerans Agy99] gi|118570407|gb|ABL05158.1| conserved hypothetical regulatory protein [Mycobacterium ulcerans Agy99] Length = 411 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITD---FLELFKKRSSAARNLTERETSCLQLAGDGY 189 S + + + L + ++ LT RE L+L G Sbjct: 303 ALASADEAARALQDADLDLRKIEPVERSPAARSLAEVQTRVMAMLTRREVEVLRLMAAGR 362 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+++IA++L +S TV +++ KL A NR +A + +R Sbjct: 363 TNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVRL 404 >gi|114320166|ref|YP_741849.1| two component LuxR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226560|gb|ABI56359.1| two component transcriptional regulator, LuxR family [Alkalilimnicola ehrlichii MLHE-1] Length = 219 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 17/133 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-----------QVITDFLE 162 + V + + E ++ V+ L Sbjct: 85 VVLTVSNAAEDVHAALQAGADGYLLKDMEPEALVAELRRAAGGELVISPELASVLAQVLT 144 Query: 163 LFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ LT RE+ L+ G +++ IA LGL TV ++ S KL + Sbjct: 145 RPNHSAADELLAELTSRESEILRHIAKGQSNKMIARDLGLMEGTVKVHVKSILKKLRMHS 204 Query: 221 RIQAIAKAIRFGY 233 R++A A++ G+ Sbjct: 205 RVEAAVWAVQHGF 217 >gi|330465576|ref|YP_004403319.1| two-component system response regulator [Verrucosispora maris AB-18-032] gi|328808547|gb|AEB42719.1| two-component system response regulator [Verrucosispora maris AB-18-032] Length = 216 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 29/83 (34%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G + LT RE L G + +IA + GLS T+ + Sbjct: 131 GITAAALGRAQPATVSLPPPFDRLTPRERDILAHLAAGEDNAQIARRFGLSTKTIRNQVS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 + KL +R+QA A G Sbjct: 191 AILGKLGVADRVQAALLARDVGI 213 >gi|319791419|ref|YP_004153059.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593882|gb|ADU34948.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 482 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 21/154 (13%) Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHK-----NGYVIFTSEFLMLAN------------- 143 G F GI P + +V+ + A Sbjct: 329 ASFVDERLDGSGFFRGIKGPAIDVAGRVLAVAAHWVLLRTSRPGQAALDEADAIAALKRE 388 Query: 144 EVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + A V+T + + AA L+ RE L G +++E A LG+ Sbjct: 389 AELGRLDAAAVAVLTGHPQTETAIAPSNEAAALLSSREIEVLGRISLGDSNKEAARVLGI 448 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV A+L + KL+ R A KA+ G + Sbjct: 449 SPSTVRAHLENIFRKLECTTRAAATLKALTLGLL 482 >gi|56415671|ref|YP_152746.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161616890|ref|YP_001590855.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168233331|ref|ZP_02658389.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235416|ref|ZP_02660474.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260442|ref|ZP_02682415.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464895|ref|ZP_02698787.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818365|ref|ZP_02830365.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445001|ref|YP_002043037.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194469310|ref|ZP_03075294.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738248|ref|YP_002116733.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247639|ref|YP_002148726.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261647|ref|ZP_03161721.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364598|ref|YP_002144235.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243718|ref|YP_002217738.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204928562|ref|ZP_03219761.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354622|ref|YP_002228423.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859015|ref|YP_002245666.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238910166|ref|ZP_04654003.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56129928|gb|AAV79434.1| two-component system response regulator protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161366254|gb|ABX70022.1| hypothetical protein SPAB_04711 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403664|gb|ACF63886.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194455674|gb|EDX44513.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713750|gb|ACF92971.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632211|gb|EDX50695.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096075|emb|CAR61670.1| two-component system response regulator protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211342|gb|ACH48739.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197239902|gb|EDY22522.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291518|gb|EDY30870.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938234|gb|ACH75567.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204321995|gb|EDZ07193.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274403|emb|CAR39430.1| two-component system response regulator protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205332558|gb|EDZ19322.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344468|gb|EDZ31232.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350531|gb|EDZ37162.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710818|emb|CAR35182.1| two-component system response regulator protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320088212|emb|CBY97974.1| Response regulator gacA Global activator [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322612954|gb|EFY09906.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619019|gb|EFY15906.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625204|gb|EFY22031.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630128|gb|EFY26901.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634320|gb|EFY31055.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635779|gb|EFY32488.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642941|gb|EFY39520.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644989|gb|EFY41520.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650087|gb|EFY46502.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656800|gb|EFY53087.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661064|gb|EFY57292.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662448|gb|EFY58661.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667326|gb|EFY63492.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674297|gb|EFY70390.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678495|gb|EFY74556.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681001|gb|EFY77035.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687063|gb|EFY83036.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193215|gb|EFZ78433.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198296|gb|EFZ83402.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200914|gb|EFZ85984.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206668|gb|EFZ91626.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213989|gb|EFZ98755.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216292|gb|EGA01020.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220514|gb|EGA04968.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225379|gb|EGA09613.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228493|gb|EGA12624.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234314|gb|EGA18402.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238626|gb|EGA22682.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244818|gb|EGA28822.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245807|gb|EGA29797.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251010|gb|EGA34886.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257242|gb|EGA40941.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262166|gb|EGA45727.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264623|gb|EGA48127.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268912|gb|EGA52370.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625526|gb|EGE31871.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629758|gb|EGE36101.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 196 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166 A I V G F S+ E+I H +L K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 131 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|15894152|ref|NP_347501.1| two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|15023760|gb|AAK78841.1|AE007602_2 Two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|325508280|gb|ADZ19916.1| Two-component response regulator [Clostridium acetobutylicum EA 2018] Length = 218 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+++E + ++ G +++EIAEKL LS T+ + KL+ +R Q A + Sbjct: 157 LSDKEINIVREIASGLSNKEIAEKLFLSEGTIKNNISIIFSKLNLRDRTQVTIFAFKNNI 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|313108775|ref|ZP_07794763.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881265|gb|EFQ39859.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 740 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193 L + ++ +LF L+ RE + L L G +++E Sbjct: 639 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 698 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I E+L +S+HTV + KL R QA+A+A G + Sbjct: 699 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 739 >gi|260773658|ref|ZP_05882574.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP 69.14] gi|260612797|gb|EEX38000.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP 69.14] Length = 216 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 38/79 (48%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + ++ + A +LT RE L+ ++++IA+ L +S TV ++L Sbjct: 132 HVSNQLLHHFRYAFHEQHTKATLDLTVREIQILRCLQAQASNDDIAKNLFISELTVKSHL 191 Query: 210 GSATVKLDAVNRIQAIAKA 228 KL NR QAI+ A Sbjct: 192 YQIYKKLAVKNRAQAISWA 210 >gi|269126099|ref|YP_003299469.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311057|gb|ACY97431.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 222 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 32/74 (43%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L R L+ RE L L +G + IA+ + LS T Y KL A N Sbjct: 131 LAQALARRRTGELLSPRERQVLALLMEGRSIAAIADSMHLSHSTAKTYAARLYEKLGAAN 190 Query: 221 RIQAIAKAIRFGYI 234 R QA+ A+R G I Sbjct: 191 RTQAVMTALRLGLI 204 >gi|221639744|ref|YP_002526006.1| response regulator receiver protein [Rhodobacter sphaeroides KD131] gi|221160525|gb|ACM01505.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] Length = 214 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + I + + + + + + +LTER+ + G +++ IA +L Sbjct: 113 RLATFDGIFLPTASLTALRGALPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGEL 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L TV ++ + KL A NR +A K Sbjct: 173 NLCESTVKVHIRNIMKKLGAKNRTEAAFK 201 >gi|119774583|ref|YP_927323.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767083|gb|ABL99653.1| transcriptional regulator, LuxR family [Shewanella amazonensis SB2B] Length = 210 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 32/64 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LT RE LQ G T+ +IA +L +S T+ +L A K+ +R QA Sbjct: 138 EDYEEDSEKLTIREREVLQALLSGSTNLDIANRLFVSESTIKTHLYRAFRKIGVSSRGQA 197 Query: 225 IAKA 228 IA A Sbjct: 198 IAWA 201 >gi|327480883|gb|AEA84193.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 219 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 3/98 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAE 196 +V+ + TD RS L T RE + G + EIAE Sbjct: 112 EAVRKVLAGQTFIEQPLATDLACQRPSRSPVKGRLADMTPREMEIFIMLARGIGNREIAE 171 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV+ +L KL+ ++ + + AI G + Sbjct: 172 RLCISSKTVSNHLALLKSKLEVSSQAELVHLAIDQGLL 209 >gi|304411116|ref|ZP_07392732.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307301761|ref|ZP_07581519.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304350651|gb|EFM15053.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306913799|gb|EFN44220.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 221 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%) Query: 108 LEGGLLPFAGIAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 L + + +R + ++ T M+A E+ + +L Sbjct: 82 ERDSLDQESAMLLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDG 141 Query: 166 KRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + LT RE + +Q G ++EIA +L +S HTV A++ S K + Sbjct: 142 NNEMPSDSVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSR 201 Query: 220 NRIQAIAKA 228 NR++ + A Sbjct: 202 NRVELLRWA 210 >gi|239940650|ref|ZP_04692587.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291444087|ref|ZP_06583477.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291347034|gb|EFE73938.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G+ ++ IAE+L +S TV ++ A KL A +R Q + Sbjct: 153 AERLAALTGREREVLVQVAGGHPNDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 212 Query: 228 AIRFGYI 234 A G + Sbjct: 213 AYESGLV 219 >gi|124022984|ref|YP_001017291.1| hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT 9303] gi|123963270|gb|ABM78026.1| Hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 6/119 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LT 175 + G +V + ++ D EL + LT Sbjct: 114 LDAGADGVIFVSSVGSGNGDFIQSLLTTLKGGIYYPADVRELARDTKQPNDAPVIDCQLT 173 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L G +++EI+E L +S TV + + + KL R QA AIR + Sbjct: 174 ERELEVLNAIVGGLSNKEISESLFVSSETVKSNVSTIISKLGVRVRTQAAVFAIRHRIV 232 >gi|113869645|ref|YP_728134.1| response regulator [Ralstonia eutropha H16] gi|113528421|emb|CAJ94766.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 224 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR G ++ LM A + ++ I + + LT RE Sbjct: 108 VRAGARGYVLKDAPADELMAAIQSVLAGRVFYSARIARGMAEQSPAAGPLDALTPRERDI 167 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ G G ++EIA +LG+SV TV + + KL R + A+ Sbjct: 168 LRGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVE 216 >gi|62182280|ref|YP_218697.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224585585|ref|YP_002639384.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62129913|gb|AAX67616.1| response regulator (repressor) in two-component regulatory system wtih UhpB, regulates uhpT operon (LuxR/UhpA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224470113|gb|ACN47943.1| two-component system response regulator protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716771|gb|EFZ08342.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 217 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166 A I V G F S+ E+I H +L K Sbjct: 95 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 151 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT+RE + G +EIA +LGLS TV+ + + KL N ++ Sbjct: 152 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 211 Query: 227 K 227 + Sbjct: 212 R 212 >gi|46581079|ref|YP_011887.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450500|gb|AAS97147.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris str. Hildenborough] Length = 227 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +R+ LT RE L +G+ + EIA+ L +S TV + + KL + Sbjct: 144 ALEDRRTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSA 203 Query: 222 IQAIAKAIRFGY 233 + A A R G Sbjct: 204 AEVRAFAQRQGL 215 >gi|328885230|emb|CCA58469.1| hypothetical protein SVEN_5183 [Streptomyces venezuelae ATCC 10712] Length = 1016 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 61/223 (27%), Gaps = 17/223 (7%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L + +R A ++ + L + L Sbjct: 799 VLTAVTAEADSRGLPAADEGRAEALDVVRRCVRGLAVQAPVWEAY-----SLQVSEELAR 853 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF- 138 W + E + + V G + + Sbjct: 854 AEGRDTAARWAEVVAA--YEPVERPYQLARARHRLADALL--VEGGRREEATALLREAHA 909 Query: 139 -------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 L +V + A A + + + LT RE + L L G T+ Sbjct: 910 TAVRLGARPLREDVELLAARARLSLAAEKPPAAAEPGDDTFGLTPREQAVLGLVAAGRTN 969 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IAE+L +S T + ++ + KL R +A A A R + Sbjct: 970 RQIAEELFISPKTASVHVSNILAKLGVSGRGEAAALAHRLHLL 1012 >gi|170728214|ref|YP_001762240.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813561|gb|ACA88145.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 221 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%) Query: 143 NEVIIEAHGACYQVITDF---LELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIA 195 + + ++ LE S A LT+RE + +QL G + EIA Sbjct: 118 ADELWYDRTLISKMFRQLVDRLETSDDYSQDAEEILQVLTKRERTIIQLVSSGARNREIA 177 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + L +S HTV A++ S K + NR++ + A +G Sbjct: 178 DNLCISEHTVKAHISSIFRKTHSRNRVELLRWAQTYG 214 >gi|331697666|ref|YP_004333905.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952355|gb|AEA26052.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 220 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 28/73 (38%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L +L+ +E L L G T+ +I +L L+ TV Y+ S K Sbjct: 132 AARALERLRTPEDPRYESLSPQERRILDLIATGLTNRQIGAELFLAEKTVKNYVSSLLHK 191 Query: 216 LDAVNRIQAIAKA 228 L R +A A Sbjct: 192 LGFARRTEAAVYA 204 >gi|237808102|ref|YP_002892542.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237500363|gb|ACQ92956.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 301 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 62/232 (26%), Gaps = 31/232 (13%) Query: 19 PRLHLIQNRIKARNFA--LYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILIETYGDD 75 + I + ++ ++ L++ + Q + D D Sbjct: 29 SLIKTISDYVEFDSWVALLFSADQTPVVLAEQPTNDGSEDSLFQDYL-----NGLYLLDP 83 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF--PVRLGFHKNGYVI 133 F S + + + R + I F P+ + + Sbjct: 84 FYIAARSSITSGLVRLDDVAPDRFLFTDYYQRYFRLNIVEDEIQFNQPIDANRTLSLSLG 143 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---------------------AAR 172 F + ++ + Sbjct: 144 AAHRFTPEEIAKLAMIQQWVIALMRQRYNYEQLSLPVQTIAETHNWQADLDMSINNTRGI 203 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE +L GY+S+ IA+KL +SV TV A+ KL ++ Q Sbjct: 204 SLTLREMDVSRLMLGGYSSKGIAQKLAISVETVKAHKKHIYSKLGINSQSQL 255 >gi|222082450|ref|YP_002541815.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727129|gb|ACM30218.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 214 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + A LT+RE+ LQL G ++++I KL L TV Sbjct: 126 YVAPTLSARLISGQGAAPAKADLIRELTDRESEVLQLVATGLSNKQIGLKLDLHEKTVKH 185 Query: 208 YLGSATVKLDAVNRIQAI 225 ++ KL NR +A Sbjct: 186 HMTQIFTKLGVANRTEAA 203 >gi|163842188|ref|YP_001626593.1| two component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162955664|gb|ABY25179.1| two component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 225 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LT 175 + L Y+ + + + A G + L + + LT Sbjct: 107 SISAALAAGARSYLTKDAGRDRILAAIRSTASGQATFDVAVARRLISGLKPSKPSFPELT 166 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ERE+ L L G ++EIA++ +SV TV ++ + KL +R QAI Sbjct: 167 ERESEILALIAAGRNNQEIAQESFVSVATVKTHINNIFAKLQLRDRAQAI 216 >gi|163749108|ref|ZP_02156358.1| transcriptional regulator, LuxR family protein [Shewanella benthica KT99] gi|161331178|gb|EDQ02067.1| transcriptional regulator, LuxR family protein [Shewanella benthica KT99] Length = 221 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 7/93 (7%) Query: 143 NEVIIEAHGACYQVITDFLELFKKR-------SSAARNLTERETSCLQLAGDGYTSEEIA 195 + + ++ + + ++ + LT+RE + +Q+ G ++EIA Sbjct: 118 ADELWYDRALISKMFRQLVSRLDRTKDYSQDNAAMLQMLTKRERTIIQIVSSGARNKEIA 177 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L +S HTV A++ S K + NR++ + A Sbjct: 178 HRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|157961641|ref|YP_001501675.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846641|gb|ABV87140.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 211 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE LQ+ +G T+ +IA +L +S T+ +L A K+ +R QAIA A Sbjct: 146 DTLTIREREVLQVLRNGSTNIDIANRLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202 >gi|91975316|ref|YP_567975.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681772|gb|ABE38074.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 224 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|126457205|ref|YP_001075234.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167827727|ref|ZP_02459198.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|242313202|ref|ZP_04812219.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|126230973|gb|ABN94386.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|242136441|gb|EES22844.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] Length = 235 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 7 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 58 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 59 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 115 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + + L + +R + Sbjct: 116 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 175 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 176 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 230 >gi|332668102|ref|YP_004450890.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332336916|gb|AEE54017.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 204 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 41/95 (43%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L + + I + L K LTE+E LQ G T++++AE Sbjct: 108 TERDLYSSIEIALYNFAQNAQPRNFNLEKLNQQLLSPLTEKEFQVLQDIYQGCTNKQMAE 167 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +SV+T+ +L + KL+ +R +AI K Sbjct: 168 QHFVSVNTIKTHLQNLYDKLNVCSRSEAIVKLREM 202 >gi|322386644|ref|ZP_08060269.1| two component system response regulator [Streptococcus cristatus ATCC 51100] gi|321269317|gb|EFX52252.1| two component system response regulator [Streptococcus cristatus ATCC 51100] Length = 227 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +++ E +Q G G +++EIA KL LS TV YL KL+ +R Q A++ Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEIAAKLYLSEGTVRNYLSGILSKLNLRDRTQLAIWAVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|307330982|ref|ZP_07610113.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883368|gb|EFN14423.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 300 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 28/60 (46%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE L L G + E A+ LGLS T ++ KL A +R Q + A G + Sbjct: 236 SERERQVLALVARGLNNAEAAQTLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 295 >gi|303237703|ref|ZP_07324263.1| hemerythrin HHE cation binding domain protein [Prevotella disiens FB035-09AN] gi|302482155|gb|EFL45190.1| hemerythrin HHE cation binding domain protein [Prevotella disiens FB035-09AN] Length = 313 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++S L++RE + G T++EIA L +S +TV + + KL + Sbjct: 238 RKSDTGDTLSDREKDVIISVVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLT 297 Query: 226 AKAIRFGYI 234 AI + Sbjct: 298 IYAIVNNLV 306 >gi|288555019|ref|YP_003426954.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288546179|gb|ADC50062.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 199 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY++ S LA+ + I G + ++L + LT RE ++L Sbjct: 93 NAEVSGYLLKDSPSEELASSIRIIMDGRRIYA-PELIDLAYDNKNP---LTNREKQVMEL 148 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++ EIA +L L+ TV Y+ KLD NRI+AI++ G+ Sbjct: 149 IAEGKSTNEIASELYLTNGTVRNYISVILDKLDVGNRIEAISRFKEKGW 197 >gi|228908960|ref|ZP_04072790.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200] gi|228850682|gb|EEM95506.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200] Length = 451 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ F E + + + A LT RE LQL G IA +L LS TV Sbjct: 364 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 423 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y +A KL N+ +A+ KA+ G I Sbjct: 424 YASTAYTKLGVCNKEEAVQKALEIGII 450 >gi|157377077|ref|YP_001475677.1| LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319451|gb|ABV38549.1| transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 221 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 42/87 (48%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 +I + + + + ++ + LT+RE + +QL G ++EIA L +S Sbjct: 124 DRTLISKMFRHLVKRLDSANDYSQETVAMLEMLTKRERTIIQLVSSGARNKEIAHNLCIS 183 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 HTV A++ S K + NR++ + A Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|53721891|ref|YP_110876.1| GerE family regulatory protein [Burkholderia pseudomallei K96243] gi|52212305|emb|CAH38329.1| GerE family regulatory protein [Burkholderia pseudomallei K96243] Length = 235 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 7 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 58 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 59 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 115 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + L + +R + Sbjct: 116 VEVLLRDGGAVLAAFSLLRLACDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 175 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 176 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 230 >gi|326792258|ref|YP_004310079.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543022|gb|ADZ84881.1| two component transcriptional regulator, LuxR family [Clostridium lentocellum DSM 5427] Length = 207 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAKAIR 230 +LTERE +G +++EI +KL +S TV ++ K +R Q A+ R Sbjct: 148 DSLTEREVEVAAAIAEGLSNKEIGKKLFISDGTVRNHISVILSKTGLEHRTQIAVRYLTR 207 >gi|290958801|ref|YP_003489983.1| two component response regulator [Streptomyces scabiei 87.22] gi|260648327|emb|CBG71438.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 220 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 2/105 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLA 185 G + + + A +++ F ++ R +T RE L Sbjct: 108 DTGPDLLAQAVRSASEGEALIAPSVTVRLLQAFADVPAGRPVAQPVSPVTAREEQVLLSV 167 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G T+ EIA+ L +S+ TV +L S KL A NR++ A Sbjct: 168 ARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYE 212 >gi|302879092|ref|YP_003847656.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302581881|gb|ADL55892.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 491 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A L+ R + L G TS +IA +L +S TV + + KL + + Sbjct: 421 RSEEGAGKLSRRHLDVIGLIAAGLTSAQIAARLNISQTTVITHRRNLMRKLGLHSAAELT 480 Query: 226 AKAIRFGYI 234 A AI+ + Sbjct: 481 AYAIKNKIV 489 >gi|171058058|ref|YP_001790407.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775503|gb|ACB33642.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 267 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 68/244 (27%), Gaps = 24/244 (9%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 ++ L+ L N +F +T + LIC L + + Sbjct: 23 IEALALNLDASLNVHTRSHFFTWTQGLLQGLIHHEALICVL-RCPESATWRVDSFSTRVA 81 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP------------ 121 D +F + + + + + + +G Sbjct: 82 DSTVFAAPLLRDIALVPRLVDAWKGAHHLPIVLPARRDGVLGSGAWVAELERIAATRLAV 141 Query: 122 --VRLGFHKN-GYVIFTSEFLMLANEVIIEAHGACYQVITDFLE------LFKKRSSAA- 171 + + + + ++ + Sbjct: 142 HGCHDIDGDANCLFLLACQGDSPDPRELCLLRLVVPFLREAWVRSQMIGGRHDDLPAPHG 201 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +T RE L+ G ++ EI + LG+S TV ++ KL+ VNR QA+ +AI Sbjct: 202 HAVITVREQEILKWIYLGKSNSEIGQILGISALTVKNHVQKMLHKLNVVNRAQAVGRAIE 261 Query: 231 FGYI 234 I Sbjct: 262 AHLI 265 >gi|160889954|ref|ZP_02070957.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492] gi|270294634|ref|ZP_06200836.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317481391|ref|ZP_07940459.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] gi|156860342|gb|EDO53773.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492] gi|270276101|gb|EFA21961.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902487|gb|EFV24373.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] Length = 203 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++A +L+ RE L L G ++EIA+KL +S+ TV ++ + T KL + Sbjct: 132 TAAGHDLSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIY 191 Query: 228 AIRFGYI 234 A+ GY+ Sbjct: 192 AVMHGYV 198 >gi|225155470|ref|ZP_03723961.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224803771|gb|EEG22003.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 225 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 LE R+ +++LT RE LQL +G ++++A +LG+S+ TV + Sbjct: 134 RLQDAARRSLETGTPRAKPSQSLTTREAEVLQLVAEGAANKQVAAELGISIKTVEKHRQQ 193 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLD + AI G I Sbjct: 194 LMNKLDIHDTAGLTRHAIATGVI 216 >gi|21224676|ref|NP_630455.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3367769|emb|CAA20094.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 2/99 (2%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + ++ V +LT+RE L G G+T+ EI Sbjct: 120 SGDAVIAPALTRRLLDEFAQYV--PAHRGDAAGDPRLVSLTDREREILVAVGKGWTNGEI 177 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A + LS TV ++G K+ A +RIQA+ A G Sbjct: 178 AARFVLSESTVKTHVGRVLAKIGARDRIQAVIFAYDHGL 216 >gi|326388485|ref|ZP_08210080.1| response regulator receiver domain protein [Novosphingobium nitrogenifigens DSM 19370] gi|326207033|gb|EGD57855.1| response regulator receiver domain protein [Novosphingobium nitrogenifigens DSM 19370] Length = 209 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 5/111 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TE 176 P+ + K G V F ++ + ++EA L T Sbjct: 94 IPMTVKAMKAGAVDFLTK--PFREQDLLEAVHIALDRARRLHAQQHDLQRTRDKLSLLTP 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE + G +++IA +LGLS TV + S KL + + Sbjct: 152 REKEVMSGVARGLLNKQIAGELGLSEITVKLHRSSLMKKLGIRGVAELVRM 202 >gi|325570549|ref|ZP_08146275.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus ATCC 12755] gi|325156395|gb|EGC68575.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus ATCC 12755] Length = 202 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+E E L+L T+E+IA+KL +S TV ++ S KL+ RI A+ + I+ Sbjct: 141 LSEIERQVLELISQEQTNEKIAKKLFISRRTVENHVSSICNKLNVQTRIGAVREGIKLNL 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|317505003|ref|ZP_07962951.1| transcriptional regulator [Prevotella salivae DSM 15606] gi|315663885|gb|EFV03604.1| transcriptional regulator [Prevotella salivae DSM 15606] Length = 318 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G +++EIAE L +SV+TV + + KL + AI Sbjct: 249 DQLSQREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 + Sbjct: 309 HLV 311 >gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 203 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E ++L G + EI++ + +S T+ +++ + K NR Q A+ Sbjct: 142 ELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALE 199 >gi|239996407|ref|ZP_04716931.1| two component LuxR family transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 219 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 R+LT +E + L+ G ++ IA +L +S TV +++ S KL A NR++ +A Sbjct: 148 PEQIRSLTRKELTVLKYLTQGLANKVIAYELNISETTVKSHVSSILKKLGASNRVKVVAS 207 Query: 228 A 228 A Sbjct: 208 A 208 >gi|210050464|dbj|BAG80716.1| transcriptional regulator [Rhodococcus sp. YK2] gi|210050474|dbj|BAG80725.1| transcriptional regulator [Terrabacter sp. YK3] Length = 402 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + A +L+ RE+ L+L G T+ IA +L ++ TV +++ KL A NR +A+A Sbjct: 339 RFAPASSLSTRESEVLRLMAAGETNSAIAARLFVTDETVKSHVKQILRKLHARNRAEAVA 398 Query: 227 K 227 K Sbjct: 399 K 399 >gi|152964708|ref|YP_001360492.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359225|gb|ABS02228.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 204 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ LA V+ + + A LTERE L Sbjct: 98 GARGYLVKDVSREELATAVLQALQDVSRR--RGGNRTRAVLTGRAPVLTEREQQVLVGMS 155 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +L LS TV + KL+A +R QA+A R+G + Sbjct: 156 RGRSNAEIGRELFLSEDTVKTHARRLFRKLEAADRAQAVAVGFRWGLV 203 >gi|150004589|ref|YP_001299333.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254883067|ref|ZP_05255777.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294776747|ref|ZP_06742211.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|319643586|ref|ZP_07998206.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|149933013|gb|ABR39711.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254835860|gb|EET16169.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294449402|gb|EFG17938.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|317384755|gb|EFV65714.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 214 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 4/99 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + +++ H A Q + + K L+ RE L L G ++EIA Sbjct: 115 GSLIKDIHQLRQYGHQARKQAADKAMHIEK----TEHELSVREIEVLILITKGLINKEIA 170 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +KL +S+ TV ++ + T KL + A+ GYI Sbjct: 171 DKLNISLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 209 >gi|326331580|ref|ZP_08197870.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950836|gb|EGD42886.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 297 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 41/93 (44%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 +V ++ E + A L RE L+ G ++ E AE LG+ Sbjct: 204 DPDVRSRLEAMVLRLTAAPGEKRPAQLVPAVRLAAREIDVLRQVALGNSNREAAEALGIV 263 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +YL SAT KL+A NR+ A+ A G I Sbjct: 264 ESTVKSYLKSATRKLNANNRVHAVRMAREAGLI 296 >gi|319795895|ref|YP_004157535.1| ATP-dependent transcriptional regulator malt-like, luxr family [Variovorax paradoxus EPS] gi|315598358|gb|ADU39424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Variovorax paradoxus EPS] Length = 914 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 69/220 (31%), Gaps = 10/220 (4%) Query: 25 QNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-DDFLFHFNSG 83 + R+ A + + A L D + + + Sbjct: 694 RQRLPAHDLDYLALAKARWEIAFGDARAALTVLDAEMHAAIASNRYRRVLKLRVLRAMAL 753 Query: 84 LLPIIWQSIQEETVI---ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + +E +S + +RL P G+ +S Sbjct: 754 QRAGDVAAAIDEVSAVLQTASQEGFMRLILDEGPAVGMLVQRYANAAAQEAAASSSASTR 813 Query: 141 LANEVIIEAHGACYQV------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + S LT +E LQL +GY++ + Sbjct: 814 GDPILADYLQRLLQAMGPMAAVDAEAAAPGAAGDSIKEPLTRKEIRVLQLLAEGYSNNAM 873 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AEKL +S TV +L + +KLDA +R QA+A A + G I Sbjct: 874 AEKLFVSDSTVRTHLRNINMKLDAKSRTQAVAIARKVGVI 913 >gi|163803952|ref|ZP_02197780.1| transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159172239|gb|EDP57142.1| transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 208 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KLD NR A+ Sbjct: 146 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTHAVIL 200 >gi|53717201|ref|YP_105982.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|126445982|ref|YP_001078134.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|134278922|ref|ZP_01765635.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|251768304|ref|ZP_02270233.2| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|52423171|gb|AAU46741.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|126238836|gb|ABO01948.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|134249341|gb|EBA49422.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|243060231|gb|EES42417.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] Length = 235 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 7 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 58 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 59 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 115 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + L + +R + Sbjct: 116 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 175 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 176 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 230 >gi|315650698|ref|ZP_07903754.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315487075|gb|EFU77401.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 217 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+ E + ++ G +++EIA+ L S TV YL + KL+ +R Q AI G Sbjct: 158 TKNEWTIIREVSKGKSNKEIAKDLSFSEGTVRNYLSNILDKLELRDRTQLAIWAIGRG 215 >gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E ++L G + EI++ + +S T+ +++ + K NR Q A+ Sbjct: 155 ELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALE 212 >gi|271500030|ref|YP_003333055.1| LuxR family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270343585|gb|ACZ76350.1| two component transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 218 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+++L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQTETPLECLSERELQIMIMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 INGDVELTHLAIRHGL 208 >gi|239930359|ref|ZP_04687312.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438712|ref|ZP_06578102.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341607|gb|EFE68563.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 6/137 (4%) Query: 104 LSVRLEGGLLPFAGIAFP----VRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVI 157 + AG + VR +G + ++A + A + + Sbjct: 84 FDLDEYAYAGLRAGASGFLVKDVRPEELLSGIRAVATGDAVVAPSLTRRLLDAYAHHLPV 143 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D E LTERE L + G G+T+ EIA + L+ TV ++G K Sbjct: 144 GDTEEKPTSDDPRLSALTEREREILTVIGKGWTNTEIATRFHLAESTVKTHVGRILAKTG 203 Query: 218 AVNRIQAIAKAIRFGYI 234 + +RIQA+ A + Sbjct: 204 SRDRIQAVILAYDAKLV 220 >gi|229197293|ref|ZP_04324023.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228586170|gb|EEK44258.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 187 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ Sbjct: 115 PTETIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVT 174 Query: 227 KAIRFGYI 234 K I+ GYI Sbjct: 175 KGIKLGYI 182 >gi|297563666|ref|YP_003682640.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848114|gb|ADH70134.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 33/76 (43%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + L + LT +E L L G+G T+ +I E+L L+ TV Y+ + K Sbjct: 143 AMLERLRGAQAEPDPLAELTPQERQILDLIGEGMTNRQIGERLYLAEKTVKNYVSALLSK 202 Query: 216 LDAVNRIQAIAKAIRF 231 LD R QA Sbjct: 203 LDLKRRTQAAVLVAEL 218 >gi|254510855|ref|ZP_05122922.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacteraceae bacterium KLH11] gi|221534566|gb|EEE37554.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacteraceae bacterium KLH11] Length = 250 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 62/225 (27%), Gaps = 9/225 (4%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIET 71 +L+EL + L N+ D D Sbjct: 15 TLEELWDAHCRQMAKFGFDRLLYGYTQYRTATSLGDPEDFVILSNHCKDYLDGFLRSGLY 74 Query: 72 YGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + L W I + V+ + G + Sbjct: 75 FHAPMLKWALDNEGAASWSMIHDMMSSGVMSPEERKVYEFNKSFDTTVGYTVSFTSVSMR 134 Query: 129 N--GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQ 183 + + + HG ++ + L R LT+R+ LQ Sbjct: 135 TKGAISLAARNSSQKEVNGVWDKHGDDILLMNNVAHLKILTLPYHAPNRALTKRQREALQ 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 GDG T+++IA +GL+ TV +L A L QA+ KA Sbjct: 195 WVGDGKTTQDIALLMGLTAATVEKHLRLAREALSVETTAQAVLKA 239 >gi|153011292|ref|YP_001372506.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151563180|gb|ABS16677.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 251 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI--- 225 A T RE L G++++ IAEKL LS +TV +L KL NR + + Sbjct: 180 PAITGFTPREVDVLTELQRGHSNKVIAEKLNLSGNTVKMHLQHIMRKLHVQNRTEVVLLL 239 Query: 226 -AKAIRFG 232 AKA G Sbjct: 240 GAKATANG 247 >gi|90417979|ref|ZP_01225891.1| possible response regulator in two-component regulatory system [Aurantimonas manganoxydans SI85-9A1] gi|90337651|gb|EAS51302.1| possible response regulator in two-component regulatory system [Aurantimonas manganoxydans SI85-9A1] Length = 221 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +VI ++ + L+ RE + L G T++ IA L + TV Y+ Sbjct: 129 RLATKVIRALHHPVQQTAGEMPVLSIREEQVVALLMKGCTNKNIAAALNIREKTVKHYMT 188 Query: 211 SATVKLDAVNRIQAIAKA----IRFGY 233 KLD NR++ + A R G Sbjct: 189 MIMQKLDVSNRLEVVVAAHGYSHREGL 215 >gi|15807682|ref|NP_285334.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460582|gb|AAF12288.1|AE001862_114 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 211 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 5/147 (3%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148 E S L+ R+ + + + + + Sbjct: 65 DIEMPRLSGLDLAERVRQEAPQTRVVIVTTFTRAGYLRRALDAGARGYLLKDAPSHELAD 124 Query: 149 AHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + L ++ A LTERE L+ A G ++ IA +LG+ V TV Sbjct: 125 AIRRVHAGGRAIDAGLAEEIWDAQSPLTEREIQVLRAAETGRSTAAIAAELGIGVGTVRN 184 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 YL A KL A NR +A KA G++ Sbjct: 185 YLSEAIGKLGAENRAEAARKARERGWL 211 >gi|300703751|ref|YP_003745353.1| transcriptional regulator protein, luxr family [Ralstonia solanacearum CFBP2957] gi|299071414|emb|CBJ42733.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum CFBP2957] Length = 252 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 11/201 (5%) Query: 36 YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95 + + ++ ++ + + + + P+ + + Sbjct: 40 VCSHGRITAAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYFDAAAPA 99 Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLANEVIIEAHG 151 I+ + +A V H G + S + V+ + Sbjct: 100 AEIDRG---WLAKFIAHDLRNAVADGVYDEGHCIGTYFSFHRLASVNVPDLASVLRDLTP 156 Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ + + +K +A L+ERE G G ++ EIA +S +TV Sbjct: 157 VLHRTLMRAVADTEKTWHSALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQ 216 Query: 208 YLGSATVKLDAVNRIQAIAKA 228 +L K NR+ A Sbjct: 217 HLKHIMDKTGCANRVGVAVLA 237 >gi|270159193|ref|ZP_06187849.1| Legionella transmission activator LetA [Legionella longbeachae D-4968] gi|289165979|ref|YP_003456117.1| Legionella transmission activator LetA [Legionella longbeachae NSW150] gi|269987532|gb|EEZ93787.1| Legionella transmission activator LetA [Legionella longbeachae D-4968] gi|288859152|emb|CBJ13081.1| Legionella transmission activator LetA [Legionella longbeachae NSW150] Length = 219 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + + S L+ERE + + G +EI+++L LS T+N Y KL Sbjct: 133 MAINSLEEAQGSPFNILSEREMQVMLMITSGMNVQEISDRLFLSTKTINGYRYRTFEKLG 192 Query: 218 AVNRIQAIAKAIRFGYI 234 N ++ A++ G I Sbjct: 193 IKNDVELTYLALKHGII 209 >gi|226364396|ref|YP_002782178.1| serine/threonine protein kinase [Rhodococcus opacus B4] gi|226242885|dbj|BAH53233.1| putative serine/threonine protein kinase [Rhodococcus opacus B4] Length = 1097 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 1/98 (1%) Query: 135 TSEFLMLANE-VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F + E + A + + L +R A LT+RE L G T++ Sbjct: 994 ARAFETASREGEALGFAAAASYALGESLPAAPRRGDPAAALTKRERQVAGLVAQGLTNKA 1053 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 IA +L +S T ++ KL +R Q A R Sbjct: 1054 IAARLVISQRTAQGHVEHVLAKLGFSSRAQIAAWVARQ 1091 >gi|90020641|ref|YP_526468.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89950241|gb|ABD80256.1| regulatory protein, LuxR [Saccharophagus degradans 2-40] Length = 221 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + K + LT RE L+L DG T+ +I+ L +S HTV ++L Sbjct: 135 RLLHHFLDKNRRAPSKVAHPDVKLTRRERQILKLIKDGATNADISTALKVSEHTVKSHLY 194 Query: 211 SATVKLDAVNRIQA 224 + K+ NR++A Sbjct: 195 NVYKKIGVRNRLEA 208 >gi|56418740|ref|YP_146058.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56378582|dbj|BAD74490.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 221 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 TERE + L G +++EIA++L LS TV Y+ S K +R Q Sbjct: 162 TERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214 >gi|88854587|ref|ZP_01129254.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88816395|gb|EAR26250.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 538 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ RE L+L G ++ EIA L LS HTV+ ++ + KLD +R A + Sbjct: 472 APPEGQLSARELEVLRLVSQGLSNPEIAASLVLSEHTVHRHVANILTKLDQTSRTGAASY 531 Query: 228 AIRFGYI 234 AI+ G + Sbjct: 532 AIQAGLL 538 >gi|332662977|ref|YP_004445765.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331791|gb|AEE48892.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 231 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARN----LTER 177 S+ L I++ H + F+++ A LT R Sbjct: 114 CRGAWGYALKSDSLERIETAILDVHHGGGYFSPAIAGKVARFFQEKELKADPDFCNLTAR 173 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+ +G +EIA + +S V++++ KL ++ +AI KAI Sbjct: 174 ELEVLKYLVNGKRYQEIANAMFISYEGVHSHVKKVYEKLHVNSKSEAIIKAIDAKL 229 >gi|294811306|ref|ZP_06769949.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC 27064] gi|294323905|gb|EFG05548.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++A DG + EIA +L LSV TV YL + KL+A NR+ AI A G Sbjct: 169 PLTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESG 228 Query: 233 YI 234 ++ Sbjct: 229 WL 230 >gi|167551640|ref|ZP_02345394.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323615|gb|EDZ11454.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 212 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +GYT+ I+EKL +S+ TV + + KL + + A R Sbjct: 150 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNYARRMRL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|153006395|ref|YP_001380720.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152029968|gb|ABS27736.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 176 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 37/66 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +S A LT+RE L DG S E+AE+LG++ TV ++L + KL NR++ Sbjct: 111 QAASPADGLTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVELA 170 Query: 226 AKAIRF 231 + ++ Sbjct: 171 RRLVQH 176 >gi|78484550|ref|YP_390475.1| LuxR family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78362836|gb|ABB40801.1| transcriptional regulator, LuxR family [Thiomicrospira crunogena XCL-2] Length = 205 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE ++ G ++ EIAE++ +S TV A++ S KLDA +R+ + K Sbjct: 141 ELLSAREIETMEWILQGKSNHEIAEQMAISERTVKAHVHSLLEKLDAKDRLNLVIK 196 >gi|108763554|ref|YP_631320.1| fruA protein [Myxococcus xanthus DK 1622] gi|30962571|dbj|BAC76753.1| DNA-binding protein [Myxococcus xanthus] gi|108467434|gb|ABF92619.1| fruA protein [Myxococcus xanthus DK 1622] Length = 229 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 35/115 (30%), Gaps = 7/115 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTER 177 +GY+ I L + LT+R Sbjct: 108 DEGASGYLFRAGLGTTAVASAINSLVRGERLFPVQLLRNDFEHPPVTSPTASVLLALTQR 167 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L G + +IA L ++ TV +++ KL A NR Q +A G Sbjct: 168 EREVLAYVAGGADNLKIAAHLQIAERTVKSHVTQLYRKLGAENRTQLALRACHLG 222 >gi|317405267|gb|EFV85597.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 186 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NLT RE +G + +EIA +L +S TV + KLDA N + ++K Sbjct: 121 RTANLTRREREISAYVANGLSCKEIAMRLDISYRTVEVHRARIMRKLDAKNTAELVSK 178 >gi|319779529|ref|YP_004130442.1| two-component response regulator [Taylorella equigenitalis MCE9] gi|317109553|gb|ADU92299.1| two-component response regulator [Taylorella equigenitalis MCE9] Length = 206 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+ G +++IA+ L +S+ TV A+ + KL+ N I A++ Sbjct: 143 KLTSREQQVLERIVAGRLNKQIADDLSISIKTVEAHRANIMEKLEVSNVADLIKVALK 200 >gi|304404077|ref|ZP_07385739.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304347055|gb|EFM12887.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 220 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 39/94 (41%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +A ++ + + + KR A LT E S ++ DG +++EIA Sbjct: 126 HPDVARKLAGMIGNGASRPAPEAQAVEPKRELAPFGLTAAEQSIVRHIADGLSNKEIAAS 185 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L LS TV Y+ KL+ +R Q ++ Sbjct: 186 LFLSEGTVKNYISDILNKLELRDRTQIAIFYLKL 219 >gi|297243056|ref|ZP_06926994.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] gi|296889267|gb|EFH28001.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] Length = 246 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 F+ L K RS + L +E + L GYT+ +IA +LGL +T+N ++ KL Sbjct: 145 ESFIRLSKSRSRSV--LPPQELKIMDLLAKGYTTNQIAAQLGLMPNTINTHIHRIYKKLH 202 Query: 218 AVNRIQAI 225 NR+QAI Sbjct: 203 VSNRVQAI 210 >gi|325677216|ref|ZP_08156882.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325551913|gb|EGD21609.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 283 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 1/98 (1%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAE 196 + V L S+ A L+ RE L G + EIAE Sbjct: 185 RSIADRLDDASLTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAE 244 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LGL + T+ +Y+ + KL+ +R +A+ +A R G I Sbjct: 245 RLGLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282 >gi|282865409|ref|ZP_06274461.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559882|gb|EFB65432.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 203 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 61/178 (34%), Gaps = 8/178 (4%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 DI + GD+ L + + E + + + L L + Sbjct: 28 DIEVVAQAARGDEVLAAAREH--AVDVALLDIEMPGMNGIEAAAELRRELPDIKIVVVTT 85 Query: 123 RLGFH--KNGYVIFTSEFLMLANEVIIEAHGACYQV----ITDFLELFKKRSSAARNLTE 176 + FL+ A + + D + A LT+ Sbjct: 86 FGRPGYLRRAMESGADAFLVKDAPSAQLADAVRRVLGGERVIDPALAAAALAEGANPLTD 145 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ A DG T+ EIA + LS TV YL +A K A NR +A+ A G++ Sbjct: 146 REREVLRAAADGATNVEIAGAMHLSPGTVRNYLSTAIQKTAARNRTEAVRVAGEKGWL 203 >gi|257055940|ref|YP_003133772.1| transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] gi|256585812|gb|ACU96945.1| transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] Length = 894 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 14/234 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + + L ++ A+ + ++ +P L + L Sbjct: 664 AEARADAAGVLRALRPL--AQGWITTHLDDTGSWPWADLYAHALV-QQNRYTEADEFLTR 720 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 L H S + + + + L A + Sbjct: 721 RENRVGLRHSRSERARLAAARGRLLGAQGDLDRAINAFDRALTLLADLPLRYDQARVNFA 780 Query: 131 Y---VIFTSEFLMLA-----NEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERET 179 Y + + + GA V EL AR LT +E Sbjct: 781 YGQTLRRAGKRRDADVALSTARELFAGLGAATYVSRCDRELKAGGQPGARADTELTPQEQ 840 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + QL G ++ E+A +L +S TV +L KL +R + A R G Sbjct: 841 AVSQLVARGLSNREVAAELYVSTKTVQYHLTRIYAKLGIRSRAELAALWGRAGL 894 >gi|88807455|ref|ZP_01122967.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] gi|88788669|gb|EAR19824.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] Length = 261 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 39/83 (46%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L + ++LT RE L+ G T+ EIAE L +S+ TV +++ S Sbjct: 169 ISGVLHHSRLSSSGGQQLPLQDLTMREEDVLRGLCRGMTNLEIAEDLLVSIETVKSHVSS 228 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R A+ A R G + Sbjct: 229 LLRKLPAKDRTAAVVTAFREGLV 251 >gi|332662577|ref|YP_004445365.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331391|gb|AEE48492.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 231 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R LT+RE L L + YT++EIAE+L +S+ TV + + +K+ N + +AI Sbjct: 150 RRLTKREQQILGLIVEEYTNQEIAEELFISIPTVETHRKNLILKMGVRNTAGLVREAI 207 >gi|297563772|ref|YP_003682746.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848220|gb|ADH70240.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + +S LT RE L L G G +++EI L LS T ++G KL +R Sbjct: 158 AVAPGSASRLDVLTGRERDVLALVGRGMSNQEIGAALHLSPATARTHVGRLLAKLGVRDR 217 Query: 222 IQAIAKAIRFGYI 234 + + A G + Sbjct: 218 VGLVVVAYETGLV 230 >gi|261346507|ref|ZP_05974151.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM 4541] gi|282565500|gb|EFB71035.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM 4541] Length = 222 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 4/122 (3%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 +R + + ++ + L Sbjct: 93 FFHDFMQPNQLADMAEIFIRRKNKIIAGISVLR-DKPFTPQEVVRLNAILPIA---ELMT 148 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + + T +E + L +G +++ IA LG+S+ TV +L + K + NR + Sbjct: 149 FDVLPDSLVSYTPKEQEIIHLVREGASNKRIALLLGISLSTVKTHLRNIFTKANVSNRTE 208 Query: 224 AI 225 + Sbjct: 209 LV 210 >gi|37223193|gb|AAQ90190.1| LuxR [Photobacterium phosphoreum] Length = 200 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 11/184 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIMYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + + + H ++ ++ ++ + + +L RE CL A Sbjct: 138 LSLAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNYDLXXREKECLAWA 196 Query: 186 GDGY 189 +G Sbjct: 197 CEGK 200 >gi|89096863|ref|ZP_01169754.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088243|gb|EAR67353.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 201 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + EA + EL LT RET L+ A G+T +IA +L Sbjct: 105 DTPSRDLAEAVRRVHAGNRMISPELSLAMWEEKSPLTPRETEILESAAAGHTMAQIASQL 164 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV Y+ KL A NRI+A+ +A G+I Sbjct: 165 YLSHGTVRNYMSEIIGKLGAANRIEAVNQAKAKGWI 200 >gi|84684327|ref|ZP_01012229.1| DNA-binding response regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84668080|gb|EAQ14548.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 225 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ LT ++ LQL +G +++IA L ++ TV A++ + KL +R Sbjct: 143 RRGDDAATRIATLTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSR 202 Query: 222 IQAIAKAIR 230 QA+ A Sbjct: 203 TQAVLIAKE 211 >gi|298247828|ref|ZP_06971633.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550487|gb|EFH84353.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1037 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +I + + L+ +E L+L G+T+++IAE+L +SV+T Sbjct: 948 ALIILRTITQSAGLPIAPVADSDNLLFEPLSIQEQRVLRLLAAGWTNKDIAEELIVSVNT 1007 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ KL NR+QA A + Sbjct: 1008 VKDHVKHLYRKLGINNRLQAGEAARHLKLL 1037 >gi|260459985|ref|ZP_05808238.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259034196|gb|EEW35454.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 871 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAG 186 G + + + A T + K + A LT+RET L+ Sbjct: 756 EGLMRLRAAQAKTDPALSAYAARIIDAAQTMPVATRKPAAPTADKEQLTQRETELLRCLS 815 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +G ++ +IA L +S TV +L + KL NR+QA+ A Sbjct: 816 EGMSNRDIAGALSVSETTVKWHLKNIFGKLSVSNRVQAVRAA 857 >gi|70726587|ref|YP_253501.1| hypothetical protein SH1586 [Staphylococcus haemolyticus JCSC1435] gi|68447311|dbj|BAE04895.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 200 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT +E L+ G+G +++E+A+KL LS TV Y + KL+A NR A KA Sbjct: 137 ANPLTHKEQVVLREIGEGLSNKEVADKLYLSNGTVRNYTSNIIDKLEAENRFDAWKKANE 196 Query: 231 FGYI 234 G+I Sbjct: 197 KGWI 200 >gi|315608389|ref|ZP_07883377.1| transcriptional regulator [Prevotella buccae ATCC 33574] gi|315249849|gb|EFU29850.1| transcriptional regulator [Prevotella buccae ATCC 33574] Length = 318 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +A L++RE + G T++EIA+ L +S++TV + + KL + Sbjct: 245 PNAEDMLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIY 304 Query: 228 AIRFGYI 234 AI + Sbjct: 305 AIVNNLV 311 >gi|288926112|ref|ZP_06420040.1| transcriptional regulator, LuxR family domain protein [Prevotella buccae D17] gi|288337152|gb|EFC75510.1| transcriptional regulator, LuxR family domain protein [Prevotella buccae D17] Length = 313 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +A L++RE + G T++EIA+ L +S++TV + + KL + Sbjct: 240 PNAEDMLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIY 299 Query: 228 AIRFGYI 234 AI + Sbjct: 300 AIVNNLV 306 >gi|253574407|ref|ZP_04851748.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846112|gb|EES74119.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 338 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 1/102 (0%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + + + G+ L+ + LT RE Sbjct: 226 HNANDGEPALPGLRDEARPRGCEAMVLDGSPAPESLPKLKPEAAIYARTD-LTHREKEVA 284 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LA +G T+ +IA +L LS T+ ++ S K+ A NR Q Sbjct: 285 ALASEGLTNRDIASRLFLSEVTIKKHMRSIFQKVGASNRTQL 326 >gi|226361383|ref|YP_002779161.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226239868|dbj|BAH50216.1| NarL family two-component response regulator [Rhodococcus opacus B4] Length = 211 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 5/114 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTER 177 + G L+ A + E + + + +R L+E+ Sbjct: 95 IMAGASGFVLKQILGTDLVAAVRTVGEGGSLLDSRATSALMNRIR-SARRDDPLAQLSEQ 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E + L G+G T+ EIAE+L L+ T+ Y+ KL R QA A Sbjct: 154 ERAVFDLIGEGLTNREIAERLFLAEKTIKNYVSRLLSKLGMQRRTQAAVLATEL 207 >gi|188591560|ref|YP_001796159.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus taiwanensis] gi|170938955|emb|CAP63962.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus taiwanensis LMG 19424] Length = 210 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + S L R+ + + + E+++ Sbjct: 53 LDMTMPGISGIDLIRRVRLEWPSLVILVLSMHNEAQVASRALRAGASGYVTKDSDPEILL 112 Query: 148 EAHGACYQ-------VITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A + D + ++ + A L++RE LQ G T EIAE L Sbjct: 113 GAIRKLAAGGKFIDPALVDAMVFHQRGTDAPAHEVLSDREFQVLQRLATGQTVNEIAESL 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS T++ + KL N + I AIR G+ Sbjct: 173 SLSAKTISTHKMRLMQKLGLQNNAELIRYAIRHGF 207 >gi|315181979|gb|ADT88892.1| two component transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 207 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 2/115 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERET 179 + +G ++ A+ I+ H L + S + L++RE Sbjct: 93 LHMGASGFVSKSEDITNIIDASRAILSGHSYFPVASFHHQNAALSGQESEMLKLLSDREM 152 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G T++EIA+K+ LS T++ Y KL + + ++ I A R G + Sbjct: 153 MVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGVV 207 >gi|312868047|ref|ZP_07728251.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] gi|311096451|gb|EFQ54691.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] Length = 228 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ E +Q G G +++EIA KL LS TV YL + KL+ +R Q +++ Sbjct: 156 KDLSTTEWRIIQEVGYGESNKEIAAKLFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQT 215 Query: 232 G 232 G Sbjct: 216 G 216 >gi|309799837|ref|ZP_07694044.1| transcriptional regulatory protein DegU [Streptococcus infantis SK1302] gi|308116553|gb|EFO54022.1| transcriptional regulatory protein DegU [Streptococcus infantis SK1302] Length = 227 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ E +Q G G +++EIA KL LS TV YL + KL+ +R Q +++ Sbjct: 155 KDLSTTEWRIIQEVGYGESNKEIAAKLFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|301054683|ref|YP_003792894.1| salavaricin two-component response regulator [Bacillus anthracis CI] gi|300376852|gb|ADK05756.1| salavaricin two-component response regulator [Bacillus cereus biovar anthracis str. CI] Length = 191 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K Sbjct: 121 TETIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTK 180 Query: 228 AIRFGYI 234 I+ GYI Sbjct: 181 GIKLGYI 187 >gi|297156203|gb|ADI05915.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 1003 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ +IAE+L +S T + ++ + KL A R +A A A R G Sbjct: 940 GLTARERDVLRLVAAGRSNRQIAEELFISPKTASVHVSNIMAKLGASGRGEAAAIAHRLG 999 >gi|296877165|ref|ZP_06901205.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|322390755|ref|ZP_08064267.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|296431685|gb|EFH17492.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|321142582|gb|EFX38048.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 228 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ E +Q G G +++EIA KL LS TV YL + KL+ +R Q +++ Sbjct: 156 KDLSTTEWRIIQEVGYGESNKEIAAKLFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQT 215 Query: 232 G 232 G Sbjct: 216 G 216 >gi|295093014|emb|CBK82105.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Coprococcus sp. ART55/1] Length = 217 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ +E + ++L DG ++EIA L LS TV Y+ S KL +R Q Sbjct: 156 ELSSKEMNIIRLVADGLNNKEIASSLYLSEGTVRNYISSILDKLQLRDRTQLA 208 >gi|225568587|ref|ZP_03777612.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM 15053] gi|225162603|gb|EEG75222.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM 15053] Length = 206 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E+E + + L DG++++EIAEK+ LS TV YL + KLD +R Q + Sbjct: 150 EKEYTLITLVADGFSNKEIAEKMFLSEGTVRNYLSNILDKLDLRDRTQLAVFYYQH 205 >gi|223937694|ref|ZP_03629596.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893666|gb|EEF60125.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 210 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 A L RE L G ++ +IA LG+S TV +L KL +R Sbjct: 134 FDSSEPLLALGLAPREAEVLLWVTQGKSNGDIASILGISEWTVKKHLLHIFEKLGVESRN 193 Query: 223 QAIAKAIR 230 A +A+ Sbjct: 194 AATLRALE 201 >gi|160885790|ref|ZP_02066793.1| hypothetical protein BACOVA_03794 [Bacteroides ovatus ATCC 8483] gi|237719368|ref|ZP_04549849.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|260175331|ref|ZP_05761743.1| transcriptional regulator [Bacteroides sp. D2] gi|299149242|ref|ZP_07042302.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23] gi|315923564|ref|ZP_07919804.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156108603|gb|EDO10348.1| hypothetical protein BACOVA_03794 [Bacteroides ovatus ATCC 8483] gi|229451228|gb|EEO57019.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|298512676|gb|EFI36565.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23] gi|313697439|gb|EFS34274.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 203 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ L++RE + G T++EIAEKL LS+HTV + + + KL + Sbjct: 125 EEEEMDNQDTLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAG 184 Query: 224 AIAKAIRFGYI 234 AI + Sbjct: 185 LTIYAIVNKLV 195 >gi|146308469|ref|YP_001188934.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp] gi|145576670|gb|ABP86202.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp] Length = 221 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + A LTERE L L G G ++++IA +LG+S TV Y+ S K Sbjct: 3 HASLVLTAAPPVPAWEELTEREGQTLALIGAGLSNKQIARELGISDGTVKIYVRSLLRKF 62 Query: 217 DAVNRIQAIAKAIRFG 232 +R++ + R G Sbjct: 63 RLSSRLELATRLHRRG 78 >gi|150397182|ref|YP_001327649.1| two component LuxR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150028697|gb|ABR60814.1| two component transcriptional regulator, LuxR family [Sinorhizobium medicae WSM419] Length = 226 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V++ E +R + + LT RE +LA G S EIA +LG++ TV +L S K Sbjct: 146 VVSRIRERDAERRAVLQKLTPRELEISRLAASGLRSREIAARLGIAPGTVKLHLHSVYGK 205 Query: 216 LDAVNRIQAIAKAIRFGY 233 L+ R++ A R Sbjct: 206 LNLTTRVELANLAQRLQL 223 >gi|84687744|ref|ZP_01015616.1| two component transcriptional regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664245|gb|EAQ10737.1| two component transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 215 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +Q L + +LT ++ LQL G +++IA +L ++ TV A++ Sbjct: 126 ALSHQSANAPLTAREDALVRISHLTRQQARILQLICAGQMNKQIAYELSIAETTVKAHVT 185 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 + KL +R QA+ A Sbjct: 186 AIMRKLGVQSRTQAVLIAQEA 206 >gi|119714227|ref|YP_919369.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119526136|gb|ABL79506.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 574 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARN--LTERE 178 R ++ V T L + A Q + L K R+ L+ RE Sbjct: 449 ARSLADRDRGVAVTEARSALQAFDRMGATSEADQAASFLRGLGIKGRTGPRDGVVLSRRE 508 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L L +G ++ EIAE+L +SV T ++ + KL +R +A A A+ Sbjct: 509 QEVLSLVVEGLSNAEIAERLFISVKTAGHHVSNILTKLGVRSRTEATAYAL 559 >gi|226312572|ref|YP_002772466.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226095520|dbj|BAH43962.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 376 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + S+ LT +E +L G T+++I+ KL +S++TV +L + K++ NR Sbjct: 308 RIASHDSNKLALLTPKEWEVYELVQQGSTNKQISGKLHISLNTVKRHLQNIYKKMEVTNR 367 Query: 222 IQA 224 Sbjct: 368 TSL 370 >gi|222081078|ref|YP_002540441.1| two-component nodulation response regulator protein [Agrobacterium radiobacter K84] gi|221725757|gb|ACM28846.1| two-component nodulation response regulator protein [Agrobacterium radiobacter K84] Length = 784 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F+ +++V V + + L++RE LQL G +++ Sbjct: 690 RIRSFIETSSDVRTALSIFSASVNSPQARALQG------GLSQREAQMLQLIAGGLSNKR 743 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA+ L +S TV +LG+ KL R +A+ A G++ Sbjct: 744 IAQTLNISEVTVKFHLGNLFRKLGCNRRAEALRAATALGWL 784 >gi|8708904|gb|AAF78795.1| putative two-component system transcriptional response regulator TcsR [Bradyrhizobium japonicum] Length = 223 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT ++ L + +G +++IA +LG+S T+ A++ + KL +R Q Sbjct: 144 MTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQ 203 Query: 224 AIAKAIR 230 A+ A R Sbjct: 204 AVIAAAR 210 >gi|119717828|ref|YP_924793.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119538489|gb|ABL83106.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 229 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAA------RN 173 +R G T L+ A + E ++ L+ F A Sbjct: 109 TIRGGARGYVTKTITGPELVQAIGRVAEGDAVFSPRLAGFVLDAFSGSIDVAAVDEDLDR 168 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE ++L GY +E+A++L +S+ TV ++ S KL +R + A Sbjct: 169 LTEREREVMRLIARGYAYKEVAKELFISIKTVETHMSSVLRKLQLSSRHELTRWASDRRL 228 Query: 234 I 234 + Sbjct: 229 L 229 >gi|114561545|ref|YP_749058.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114332838|gb|ABI70220.1| two component transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 202 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L ++E L+LA +G ++ +IA +L ++ TV YL A KL+A NR Sbjct: 130 ELAFTAIGEIDPLNDKERRALRLASEGLSTSDIASQLFIAEGTVRNYLSEAISKLNASNR 189 Query: 222 IQAIAKAIRFGYI 234 I A A + G++ Sbjct: 190 IDAARIAKQKGWL 202 >gi|325521463|gb|EGD00283.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 207 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 16/208 (7%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88 A ALY ++ + ++ + D F + + Sbjct: 3 GAERLALYICDAGMTIDFFERR-----GLPDAFHRQYLDDMY-RLDPFDENLADLPD-VD 55 Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII- 147 + + + +G R + R G G + + + I Sbjct: 56 VALLSDHLAHDGAGAEYRRFLESFQIANMVEMVFRTGNVLAGMSVCLPQACDRSTTESIC 115 Query: 148 -EAHGACYQVITDFLEL-------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 AH ++ + L + A L++RE +L G+++ ++A L Sbjct: 116 KAAHAFHPYILFNLSVLFKDGKIGSRDDIIARYGLSKREAQVAELICKGFSNGDLARALH 175 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SV TV +L + K NR ++ Sbjct: 176 VSVATVKTHLLNIFAKTSVTNRTSLVSL 203 >gi|319940899|ref|ZP_08015237.1| hypothetical protein HMPREF9464_00456 [Sutterella wadsworthensis 3_1_45B] gi|319805615|gb|EFW02403.1| hypothetical protein HMPREF9464_00456 [Sutterella wadsworthensis 3_1_45B] Length = 249 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE+ + L G + EI LG+S HTV A++ KL +R +A+ +A G Sbjct: 187 LSQRESEIIMLLAKGISFSEIGGILGISPHTVTAHIKKIYKKLGVHSRGEAVYEATCMGL 246 Query: 234 I 234 + Sbjct: 247 V 247 >gi|302533753|ref|ZP_07286095.1| two-component system response regulator [Streptomyces sp. C] gi|302442648|gb|EFL14464.1| two-component system response regulator [Streptomyces sp. C] Length = 221 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L+ + ++ + A LT+RE L+L G +++E++E Sbjct: 121 RLVARGDSLLFPAAVRALAAAHTAAAEPPAPAWAARLTDREADVLRLMATGLSNQEMSEH 180 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+ TV ++ + K + +R QA+ A G+I Sbjct: 181 LGVGPQTVKTHVAAVLAKTGSRDRTQAVIAAYEGGFI 217 >gi|302387360|ref|YP_003823182.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] gi|302197988|gb|ADL05559.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] Length = 222 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I + + + R LT E + G +++EIA+ L LS T Sbjct: 128 DIAAKVLRFFSQMAQADDTISVREKDMEELTRTEWKIIAQVEKGASNKEIAKNLNLSEGT 187 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIR 230 V YL + KLD +R Q A++ Sbjct: 188 VRNYLSTILNKLDLRDRTQLAIWAVQ 213 >gi|296118527|ref|ZP_06837105.1| ATP-dependent transcriptional regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] gi|295968426|gb|EFG81673.1| ATP-dependent transcriptional regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] Length = 915 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-- 223 R ++A +LT +E Q A G T++EIA +L LS TV +L KL R + Sbjct: 847 PRQASASSLTTQELEVAQNAASGLTNKEIAAQLFLSPKTVEFHLTRIYRKLQIRTRTELP 906 Query: 224 -AIAKAIR 230 A+A+A+R Sbjct: 907 AALAQALR 914 >gi|238854471|ref|ZP_04644810.1| Two-component response regulator [Lactobacillus jensenii 269-3] gi|260665481|ref|ZP_05866328.1| two-component system response regulator [Lactobacillus jensenii SJ-7A-US] gi|282934541|ref|ZP_06339793.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1] gi|313471834|ref|ZP_07812326.1| Two-component response regulator [Lactobacillus jensenii 1153] gi|238832898|gb|EEQ25196.1| Two-component response regulator [Lactobacillus jensenii 269-3] gi|239530121|gb|EEQ69122.1| Two-component response regulator [Lactobacillus jensenii 1153] gi|260560749|gb|EEX26726.1| two-component system response regulator [Lactobacillus jensenii SJ-7A-US] gi|281301379|gb|EFA93671.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1] Length = 201 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L++ T++E+A++L LS TV Y+ S K +R++A+ A G Sbjct: 140 PLTKRELEILKMLEQVATTKELAQRLFLSEGTVRNYISSILSKTGTASRLEALNLARDKG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|254482414|ref|ZP_05095654.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2148] gi|214037419|gb|EEB78086.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2148] Length = 209 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 57/195 (29%), Gaps = 22/195 (11%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 I + SG I+W I E S + V+ Sbjct: 5 FITPAGKLRDRWEQAFPRGRAAVRVADIGEATSGSRGIVWLDIAALAPAERSAE--VQAA 62 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQ--------VI 157 + G + ++ L A E + E ++ Sbjct: 63 AAFGWPV-VVMAATPGESEAFQLLNQGAVGYCHLKAAPEQLREVALVVEHGGFWMPPELM 121 Query: 158 TDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 FL L + LT RE + G ++ EI++ L +S TV A+L Sbjct: 122 QRFLALSTRVVPTKAPVSPELNELTSRELMVAEQVARGASNREISQALSISERTVKAHLS 181 Query: 211 SATVKLDAVNRIQAI 225 +A KL +R+Q Sbjct: 182 AAFEKLGVRDRVQLA 196 >gi|254254261|ref|ZP_04947578.1| Response regulator [Burkholderia dolosa AUO158] gi|124898906|gb|EAY70749.1| Response regulator [Burkholderia dolosa AUO158] Length = 221 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 38/83 (45%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ + ++++ L+ RE ++L G++ EIAE++ S T++ + Sbjct: 139 IATEILANVFSSRTRQTTGVDTLSPRELEVVRLICAGHSIAEIAERVCRSPKTISNQKNA 198 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 A KL N ++ A G I Sbjct: 199 AMRKLAVRNDVELARAARDLGII 221 >gi|73540995|ref|YP_295515.1| LuxR response regulator receiver [Ralstonia eutropha JMP134] gi|72118408|gb|AAZ60671.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia eutropha JMP134] Length = 210 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTER 177 P+ + K G + F E +E+ + TD ++R++ LT R Sbjct: 96 VPMAVSTMKRGAIDFI-EKPFDESELRSLVERMLQKARTDHSAAREQRAAKDLLGKLTTR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 EQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 208 >gi|33592926|ref|NP_880570.1| virulence factors transcription regulator [Bordetella pertussis Tohama I] gi|61219948|sp|P0A4H2|BVGA_BORPE RecName: Full=Virulence factors putative positive transcription regulator BvgA gi|61219950|sp|P0A4H3|BVGA_BORBR RecName: Full=Virulence factors putative positive transcription regulator BvgA gi|61219953|sp|P0A4H4|BVGA_BORPA RecName: Full=Virulence factors putative positive transcription regulator BvgA gi|39353|emb|CAA41251.1| bvgA product, put. positive regulator [Bordetella bronchiseptica] gi|39728|emb|CAA37123.1| bvgA product, put. positive regulator [Bordetella parapertussis] gi|144039|gb|AAA22969.1| BvgA positive transcription regulator (put.); putative [Bordetella pertussis] gi|33572574|emb|CAE42161.1| virulence factors transcription regulator [Bordetella pertussis Tohama I] gi|332382338|gb|AEE67185.1| virulence factors transcription regulator [Bordetella pertussis CS] Length = 209 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + LQL G ++++IA+ + LS TV+ Y KL+A + ++ I A R Sbjct: 149 LSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNL 208 >gi|307131662|ref|YP_003883678.1| Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS) [Dickeya dadantii 3937] gi|306529191|gb|ADM99121.1| Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS) [Dickeya dadantii 3937] Length = 218 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+++L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQAETPLECLSERELQIMMMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 INGDVELTHLAIRHGL 208 >gi|302524738|ref|ZP_07277080.1| two-component system response regulator [Streptomyces sp. AA4] gi|302433633|gb|EFL05449.1| two-component system response regulator [Streptomyces sp. AA4] Length = 218 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L L GDG + EIA L +S TV ++ + K +R A+ A+ Sbjct: 150 PDLSLTAREREILGLIGDGLRNPEIAAALVISEATVKTHINNLFAKAGFHSRADAVRYAL 209 Query: 230 R 230 + Sbjct: 210 K 210 >gi|113867387|ref|YP_725876.1| response regulator [Ralstonia eutropha H16] gi|113526163|emb|CAJ92508.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 210 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTER 177 P+ + K G + F E +E+ + TD ++R++ LT R Sbjct: 96 VPMAVSTMKRGAIDFI-EKPFDESELRALVERMLTKARTDHSAAREQRAAKDLLGKLTTR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 EQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 208 >gi|1916865|gb|AAB52544.1| response regulator BpdT [Rhodococcus sp. M5] Length = 209 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 EV+ + + + ++R L+ RE +++ G T+ E+AE+L +S Sbjct: 116 REVMAGDDFVSLRAAAPGVGVRERRKDTDIDALSARELEVMRMVAAGLTTSEVAERLTVS 175 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ S KL R + A+ G + Sbjct: 176 PRTVESHRASIQRKLHVRTRAEMARIALDEGLL 208 >gi|85703813|ref|ZP_01034916.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. 217] gi|85671133|gb|EAQ25991.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. 217] Length = 240 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT ++ LQL +G +++IA +L ++ TV ++ + KL R QA+ A Sbjct: 173 LTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227 >gi|309776463|ref|ZP_07671449.1| putative transcriptional regulator, LuxR family [Erysipelotrichaceae bacterium 3_1_53] gi|308915854|gb|EFP61608.1| putative transcriptional regulator, LuxR family [Erysipelotrichaceae bacterium 3_1_53] Length = 841 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE LQ G +++ IAE L +S+ TV ++ + KL NR++A+ Sbjct: 778 LSERELEVLQELAQGNSNKVIAEHLYISLATVKTHILNIYGKLQVTNRVEALNYYREH 835 >gi|253997167|ref|YP_003049231.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983846|gb|ACT48704.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 263 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ERE S ++ G T++EI L +S TV ++ KLD +NR QA+ Sbjct: 202 LSEREISIMEWVKAGKTNQEIGIILDISSFTVKNHMQRILKKLDVLNRAQAV 253 >gi|228986249|ref|ZP_04146388.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773448|gb|EEM21875.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 187 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K I Sbjct: 118 TIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGI 177 Query: 230 RFGYI 234 + GYI Sbjct: 178 KLGYI 182 >gi|222081090|ref|YP_002540453.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter K84] gi|221725769|gb|ACM28858.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter K84] Length = 500 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194 V+ + V+ L + S A + L++RE L L G + E+ Sbjct: 389 EAIESVMADTSWFSRSVVDRLATLRQVSSGKAPSAQLLDLSDREKEILALICRGQSDAEM 448 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +E L LS +T+ ++ S +K+ R A+ A G+ Sbjct: 449 SETLHLSKNTIRNHVASLYIKIGVNRRAAAVIWARERGF 487 >gi|149176998|ref|ZP_01855607.1| two component transcriptional regulator, LuxR family protein [Planctomyces maris DSM 8797] gi|148844253|gb|EDL58607.1| two component transcriptional regulator, LuxR family protein [Planctomyces maris DSM 8797] Length = 221 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT R+ L+ G + +E+A + LS +++++ KL +R++ +IR G Sbjct: 158 SLTSRQIEVLRHLARGKSVKEVARSMHLSEKSIDSHKYRIMHKLGIHDRVELARYSIREG 217 Query: 233 Y 233 Sbjct: 218 L 218 >gi|114571243|ref|YP_757923.1| two component LuxR family transcriptional regulator [Maricaulis maris MCS10] gi|114341705|gb|ABI66985.1| two component transcriptional regulator, LuxR family [Maricaulis maris MCS10] Length = 216 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + L +R+ + L G T++E+A L +S +TV +++ + LD R Sbjct: 147 PRGDRPLPRLGQRQLEIVHLMAGGATNKEVAATLNISENTVKSHMRAIFEALDVHTRTAC 206 Query: 225 IAKAIRFGYI 234 + KA G I Sbjct: 207 VRKAQALGMI 216 >gi|27378578|ref|NP_770107.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27351726|dbj|BAC48732.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 226 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Query: 140 MLANEVIIEAHGACYQVITDFL----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 +++ +IEA L +R+ A +LT RE L G +++IA Sbjct: 121 PVSSGQLIEAIERALSQQETARGLRSRLDSRRAHVA-SLTPRERQVFDLIVRGKINKQIA 179 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LG + TV A+ K+ + + ++ A G + Sbjct: 180 YELGTTERTVKAHRHQVMEKMQVSSLAELVSTAQLLGML 218 >gi|322378102|ref|ZP_08052588.1| transcriptional regulatory protein DegU [Streptococcus sp. M334] gi|321280939|gb|EFX57953.1| transcriptional regulatory protein DegU [Streptococcus sp. M334] Length = 198 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G T ++I EK+ +S TV+ +L + KL +R +AI A + Sbjct: 133 DVLTSREIEMLELVRNGLTIDDICEKVYVSKRTVSNHLANIFSKLGVSSRQEAIHVAEQL 192 Query: 232 GY 233 GY Sbjct: 193 GY 194 >gi|260772003|ref|ZP_05880920.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP 69.14] gi|260612870|gb|EEX38072.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP 69.14] Length = 209 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + DG +++IA +L +S T+ A++ + KL+ NR QA+ Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLNVTNRTQAVIL 203 >gi|255009756|ref|ZP_05281882.1| LuxR family transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313147543|ref|ZP_07809736.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313136310|gb|EFR53670.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 200 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 D + + L+ RE L L G ++EIA+KL +S+ TV Sbjct: 109 LHQHAHHDGYPVKDMPPASPAATGHELSAREIEVLVLITKGLINKEIADKLNISLTTVIT 168 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + T KL + A+ GY+ Sbjct: 169 HRKNITEKLGIKSVSGLTIYAVMNGYV 195 >gi|156975631|ref|YP_001446538.1| hypothetical protein VIBHAR_03364 [Vibrio harveyi ATCC BAA-1116] gi|156527225|gb|ABU72311.1| hypothetical protein VIBHAR_03364 [Vibrio harveyi ATCC BAA-1116] Length = 221 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE +L G ++ +IA + +S++T+ + + KL+ +R + +A A + Sbjct: 153 LTKREGEICKLMLQGLSNTQIARQSNVSINTIKTHASNVLHKLNVHSRYELMAMAKKH 210 >gi|152997183|ref|YP_001342018.1| response regulator receiver protein [Marinomonas sp. MWYL1] gi|150838107|gb|ABR72083.1| response regulator receiver protein [Marinomonas sp. MWYL1] Length = 250 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE ++L G +S IAEK +S TV + + KL+ ++ + K Sbjct: 194 LTKREKEIVKLILTGLSSAAIAEKCFVSEGTVKNHRKNIYRKLNIKSQAELFRK 247 >gi|85711048|ref|ZP_01042108.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina baltica OS145] gi|85694961|gb|EAQ32899.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina baltica OS145] Length = 207 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + E K S A L+ R+ +QL G +++EIA LG++ T+ +L + + Sbjct: 129 NLNEPRNKSSGAESFLSPRQLEIMQLLAQGLSNKEIANILGITEGTIRVHLSAIFKAIKV 188 Query: 219 VNRIQAIAK 227 NR +A Sbjct: 189 SNRTEATLW 197 >gi|121606230|ref|YP_983559.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120595199|gb|ABM38638.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] Length = 275 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 40/121 (33%), Gaps = 7/121 (5%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSA---ARNL 174 + L + E L L + + LE + A L Sbjct: 145 LVSIVLKRRGRDFDERDRERLELLRPHLAFLYRHARHARAAVTLEEGEAPLPPDIHAPGL 204 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE + G EIA L +S TV +L VKL R A+ +A+ I Sbjct: 205 TQREAEVMHWLACGKMDAEIAALLAISPRTVQKHLEHIYVKLGVETRTAAVMRALA---I 261 Query: 235 C 235 C Sbjct: 262 C 262 >gi|158313488|ref|YP_001505996.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108893|gb|ABW11090.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 217 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----------NLT 175 +G+++ L V + G T L ++ +S R LT Sbjct: 93 AGASGFLLKDVSPEQLVAAVRLVRAGDALLAPTITRRLVERFASPERVAAATHRDLATLT 152 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G ++ E+A + LS TV ++ KL +R+QA+ A G + Sbjct: 153 PRELEVLRFLARGLSNAELAARFQLSEATVKTHVARILGKLRLRDRVQAVVVAYETGLV 211 >gi|46203993|ref|ZP_00050651.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 214 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 11/119 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L G+++ + LA+ V A G V+ + L + + Sbjct: 91 LRAGACGFLLKDAPPDELAHAVRAAAQGRPVLAPAVLRRVMTLAAENTRPPDAAAVGALA 150 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE + G ++ EI L +S+ TV ++ KL +R Q A +R Sbjct: 151 TLSPREREIARALARGMSNAEICAALFISLATVKTHVSRVIAKLGVESRTQVAALVLRN 209 >gi|282862429|ref|ZP_06271491.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562768|gb|EFB68308.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 247 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLA 185 NG + + + + +++ +V+ + ++ A LT RE L L Sbjct: 131 NGADLVAAVHTVASGTSMLDPRTTA-RVMARLRGPQQPPAAEASELDRLTPRERQILDLI 189 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G+G T+ EIAE+L L+ TV + + KL RIQA A R Sbjct: 190 GEGLTNREIAERLFLAEKTVKNRISAILAKLGVGRRIQAAMLAGR 234 >gi|255034528|ref|YP_003085149.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254947284|gb|ACT91984.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 206 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 32/57 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + NLT RE + +G T++E+A ++ +S+ TV ++ + KL +R I++ Sbjct: 147 SENLTPREAQIVLAIEEGLTNKEVAVRMDISLETVKYHIKNIYEKLQVNSRHALISR 203 >gi|302036829|ref|YP_003797151.1| putative LuxR family response regulator [Candidatus Nitrospira defluvii] gi|190343243|gb|ACE75631.1| putative two component transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604893|emb|CBK41226.1| putative Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 249 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +LT+RE + L G+G ++++IA +L + TV +L S KLD +R Q + +A + Sbjct: 165 SEDLTKRERDIITLIGEGLSNKDIACRLSICSTTVRHHLTSIFGKLDVHSRQQLLIRAHK 224 Query: 231 FGYI 234 +G + Sbjct: 225 YGLV 228 >gi|73543101|ref|YP_297621.1| LuxR response regulator receiver [Ralstonia eutropha JMP134] gi|72120514|gb|AAZ62777.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia eutropha JMP134] Length = 231 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCL 182 GYV+ + L + G + + ++ + LT RE L Sbjct: 116 RAGARGYVLKDAPADELMAAIEAVLAGRVFYSARIARGMAEQMPATGPLDALTRRERDIL 175 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G G ++EIA +LG+SV TV + + KL R + A+ Sbjct: 176 GCIGRGMANKEIATQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVEQ 224 >gi|39934752|ref|NP_947028.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192290274|ref|YP_001990879.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39648602|emb|CAE27123.1| ptwo-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] gi|192284023|gb|ACF00404.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 208 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 13/114 (11%) Query: 127 HKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAA------RN 173 + + L + I+ + + + + + + Sbjct: 89 GDIAMAVNAIKNGALDFIEKPFRGKEIVSRVEEAIEAFSRRRDAGQGSKAPSYNFPGKEP 148 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L G T++E +LG+S T+ + + KL A N + Sbjct: 149 LTLREREVLELFSAGNTNKEAGRQLGISPRTIEYHRANIMKKLGARNATDLVRI 202 >gi|332306646|ref|YP_004434497.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173975|gb|AEE23229.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 213 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEI 194 +++ ++ ++ + ++ LT + LQL DG +++I Sbjct: 113 SDAVQQLLDGEQWLPSELFEQVQKIEDSQEQAFAAKLAQLTPHQLKVLQLMADGLLNKQI 172 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A +LG+S T+ ++ + KL NR QA Sbjct: 173 AYELGVSESTIKQHVSAVLHKLGFNNRTQA 202 >gi|323358969|ref|YP_004225365.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323275340|dbj|BAJ75485.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 206 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + +L+ RE L+L G ++ ++AE+L ++ TV ++L KL +R Sbjct: 133 RLMARLREPRISLSAREIEVLRLVARGASNADVAERLHITDATVKSHLAHVFSKLGVTSR 192 Query: 222 IQAIAKAIRFGYI 234 A++ A G + Sbjct: 193 TAAVSTARSLGIL 205 >gi|296128509|ref|YP_003635759.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296020324|gb|ADG73560.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 211 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 149 AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A +V +R +T RE L G ++ E+A +LG+ TV Sbjct: 122 ALLLGPRVARRLAADGPRRPVPGLDRVTAREREVLAAVAQGLSNAEVAARLGIGEQTVKT 181 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL +R Q + A G + Sbjct: 182 HVSELLRKLGRRDRAQLVVAAYEGGVV 208 >gi|212634670|ref|YP_002311195.1| regulatory protein LuxR:response regulator receiver [Shewanella piezotolerans WP3] gi|212556154|gb|ACJ28608.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella piezotolerans WP3] Length = 219 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-------KRSSAA 171 + + +G++ +S LA +EA + + +EL + + +S Sbjct: 95 TISRAIHYGSSGFIPKSSSMETLA--TALEAVLFGDVWLPEGVELQEVSDDGTDQMASKL 152 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ A++ Sbjct: 153 SDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV-IALQQ 211 >gi|146282625|ref|YP_001172778.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145570830|gb|ABP79936.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri A1501] Length = 219 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 3/98 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAE 196 +V+ + TD RS L T RE + G + EIAE Sbjct: 112 EAVRKVLAGQTFIEQPLATDLACQRPSRSPVRGRLVDMTPREMEIFIMLARGIGNREIAE 171 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV+ +L KL+ ++ + + AI G + Sbjct: 172 RLCISSKTVSNHLALLKSKLEVSSQAELVHLAIDQGLL 209 >gi|317474899|ref|ZP_07934168.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316908802|gb|EFV30487.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 192 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +L+ RE L L G ++EIA+KL +S+ TV + + KL + Sbjct: 121 TPDNHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIY 180 Query: 228 AIRFGYI 234 A+ GY+ Sbjct: 181 AVMHGYV 187 >gi|307331693|ref|ZP_07610799.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882672|gb|EFN13752.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 302 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 41/113 (36%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR + L E++ + L+ RE Sbjct: 189 VREAHGDLRALAHRVPDRELREEILTACSRLARASSGRGRHREHRNGGGGVELSPREVDV 248 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T+ AE+LGL TV +YL S+ KL A R+ A+ +A R G + Sbjct: 249 LACVASGATNSTAAERLGLRPETVKSYLRSSMRKLGAHTRLHAVVEARRAGLL 301 >gi|270294227|ref|ZP_06200429.1| transcriptional regulator [Bacteroides sp. D20] gi|270275694|gb|EFA21554.1| transcriptional regulator [Bacteroides sp. D20] Length = 254 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 38/65 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + L+ RE L+L G+ S+EIA +LG+S++TVN + + KLDA N ++AI Sbjct: 188 SPDKQLSNREKEILRLIRQGFLSKEIAHQLGVSIYTVNNHRKNILSKLDANNIMEAIHIV 247 Query: 229 IRFGY 233 G Sbjct: 248 ENLGI 252 >gi|119870231|ref|YP_940183.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126436928|ref|YP_001072619.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|119696320|gb|ABL93393.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126236728|gb|ABO00129.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 215 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L +RS L+ +E L L G+G T+++IA ++ L+ TV Sbjct: 122 RSLLDNRAAAALMSKLRGDVERSDPLSGLSAQERVLLDLLGEGLTNKQIAARMFLAEKTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAK 227 Y+ KL R QA Sbjct: 182 KNYVSRLLAKLGMERRTQAAVF 203 >gi|159901160|ref|YP_001547407.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894199|gb|ABX07279.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 219 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDG 188 S +A + A +V+ LE + K + A LTERE LA +G Sbjct: 110 LISHISAVAQGETVLAGPIAQKVVRQLLEGPQPTVSTKTNDALNALTERERQVFFLAAEG 169 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + +IA++L LS T+ +L + KL N+ + A++ Sbjct: 170 RRNSDIAQQLILSEETIKTHLRNIYSKLGLGNKAELRLFAVQARL 214 >gi|27376305|ref|NP_767834.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349445|dbj|BAC46459.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 223 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT ++ L + +G +++IA +LG+S T+ A++ + KL +R Q Sbjct: 144 MTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQ 203 Query: 224 AIAKAIR 230 A+ A R Sbjct: 204 AVIAAAR 210 >gi|331698232|ref|YP_004334471.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952921|gb|AEA26618.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 204 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 2/97 (2%) Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E +++A + + D + S LTERE L A DG T +IA + Sbjct: 108 DSPPEQLVDAVRRVHAGLRVVDPALAAESLSQGTSPLTERERDVLVAAADGATVADIARR 167 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV +L SA K DA R +A+ A G++ Sbjct: 168 LHLSEGTVRNHLSSAIGKTDARTRAEAVRIADGNGWL 204 >gi|322391432|ref|ZP_08064901.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145515|gb|EFX40907.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 228 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ E +Q G G +++EIA KL LS TV YL + KL+ +R Q +++ Sbjct: 156 KDLSTTEWRIIQEIGYGESNKEIAAKLFLSEGTVRNYLSTILSKLNLRDRTQLAIWSVQT 215 Query: 232 G 232 G Sbjct: 216 G 216 >gi|319953755|ref|YP_004165022.1| two component transcriptional regulator, luxr family [Cellulophaga algicola DSM 14237] gi|319422415|gb|ADV49524.1| two component transcriptional regulator, LuxR family [Cellulophaga algicola DSM 14237] Length = 214 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L+L + T++EIA+KL LS HT+ +Y + KL+ N A++ G Sbjct: 151 SLTDREKEVLKLIAEENTTQEIADKLFLSKHTIESYRKNLISKLNVKNLAGLTKHALKMG 210 Query: 233 YI 234 + Sbjct: 211 LL 212 >gi|304395181|ref|ZP_07377065.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304357434|gb|EFM21797.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 206 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175 PV + K G F ++ + E I++A ++ L ++R + LT Sbjct: 85 TIPVTVRAMKTGAYEFLTK--PVEPERILQAVAEALEIAEQNLASSQERREIVQRHQTLT 142 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE+ + LA G +++IA ++G+S T + K++A + + A R Sbjct: 143 PRESEVMLLAISGLLNKQIAAEMGVSEITAKVHKRRVMEKMNARSLTDLVRAAERLNI 200 >gi|294140574|ref|YP_003556552.1| LuxR family DNA-binding response regulator [Shewanella violacea DSS12] gi|293327043|dbj|BAJ01774.1| DNA-binding response regulator, LuxR family [Shewanella violacea DSS12] Length = 219 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 11/117 (9%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--------HGACYQVITDFLELFKKRSS 169 + + + +G++ +S LA + H ++ D L ++ + Sbjct: 94 MTISRAVHYGSSGFIPKSSSMETLAAALASVLYGDIWLPDHAEIQEIQEDATALVARKLA 153 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 154 ---DLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207 >gi|209521727|ref|ZP_03270414.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209497844|gb|EDZ98012.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 293 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 79/232 (34%), Gaps = 30/232 (12%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ L+ L ++ + +A + L P ++ + ++ Sbjct: 10 PERRDGLKALLRQIDRLARFTEADEWRLLERPFKRYRPD--LVVIDWEDWMS--VAQVRA 65 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 L+ + D + G +P + +++ +E V+ + + + A + + Sbjct: 66 LLSHFPDLRISVLTDGTVPALVRALMDEGVLGVVPRDTDPCL---IVRALEMVLLGGHYV 122 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERETSCL 182 G + L + ++ + L+ R+ + Sbjct: 123 PPGALAI---DPPLPTDT-------------TIRPFDEECPPPRRNKLSSGLSPRQEQIM 166 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G ++ IA LG+S TV +L S +L A NR A+ A+ G++ Sbjct: 167 RCVHMGSANKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216 >gi|298483146|ref|ZP_07001326.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. D22] gi|298270663|gb|EFI12244.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. D22] Length = 200 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Query: 152 ACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + S L+ RE L L G ++EIA+KL +S+ TV Sbjct: 108 LHQHAHHNGYPVKDMPSMPPTQPHQEILSSREIEVLVLITKGLINKEIADKLNISLTTVI 167 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + T KL + A+ GYI Sbjct: 168 THRKNITEKLGIKSVSGLTIYAVMNGYI 195 >gi|291450698|ref|ZP_06590088.1| two-component system response regulator [Streptomyces albus J1074] gi|291353647|gb|EFE80549.1| two-component system response regulator [Streptomyces albus J1074] Length = 204 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + D + A LT+RE L L G T+ EIA +L + TV +++ + Sbjct: 122 RALALAHDPRRAAE--PPWAARLTDREREVLHLMATGLTNAEIAARLTVGPATVKSHVAA 179 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 K +R QA+ A G Sbjct: 180 VLAKTGTRDRTQAVIAAYEAGL 201 >gi|313680133|ref|YP_004057872.1| two component LuxR family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152848|gb|ADR36699.1| two component transcriptional regulator, LuxR family [Oceanithermus profundus DSM 14977] Length = 196 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 154 YQVITDFLELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L L + +LT RE L L G T+ E+ + LGL TV Sbjct: 107 AELARRILRLTQNPEDSSFTPPPVPSLTPREREVLDLLARGLTAREMGDILGLKPDTVRD 166 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 YL KLDA NRI+A+ +A R G++ Sbjct: 167 YLKRLYGKLDAGNRIEALEQARRLGFL 193 >gi|309790969|ref|ZP_07685510.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308227001|gb|EFO80688.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 215 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELF--KKRSSAARNL 174 L GYV+ ++ + L + + + G ++I+ +L + A L Sbjct: 94 LAAGAVGYVLKDADAVELIHGIRVALQGGRYLSPTLAERMISAYLHQPSPDQHIDWAEML 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L LA G ++ EI ++L +S T + + KL + + A G + Sbjct: 154 TARERQVLILAAQGLSNAEIGDRLTISPRTAETHRTNLLRKLGLKGQTDLMHFAHERGLL 213 >gi|294146475|ref|YP_003559141.1| NarL-family response regulator [Sphingobium japonicum UT26S] gi|292676892|dbj|BAI98409.1| NarL-family response regulator [Sphingobium japonicum UT26S] Length = 207 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 7/148 (4%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + L + + + + A Sbjct: 54 LDVRMPDMDGLAVQRELRDRGIMLPVVIMTGHGDIDMAVTAMKAGASDFIEKPFEKAALL 113 Query: 152 ACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 C + + ++ A + LTERE L +G ++ IA L +S T Sbjct: 114 GCVEAARRMAVADRGANARAEDARARLNILTEREREVLDGLVEGLPNKTIAYDLAISPRT 173 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232 V + + KL+ + +A+ A G Sbjct: 174 VEIHRANLMQKLEVKSLAEALRIAFHAG 201 >gi|269215660|ref|ZP_06159514.1| transcriptional regulator, LuxR-family [Slackia exigua ATCC 700122] gi|269131147|gb|EEZ62222.1| transcriptional regulator, LuxR-family [Slackia exigua ATCC 700122] Length = 511 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 2/117 (1%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 AG+A + +++ A + LE SA Sbjct: 386 FGIAAGLARILSTKGGIAAAFSGSADMDAEEASAGEPADPVA--AFAETLESHFDDLSAQ 443 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G+TS IA+KL +S TV + + KLD +R + I A Sbjct: 444 FGLTPREREIAMLTAQGFTSTYIADKLVISASTVRFHQQNVYRKLDIHSRHELIELA 500 >gi|256396070|ref|YP_003117634.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362296|gb|ACU75793.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 9/105 (8%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---------TERETSCLQLAGDGY 189 ++A + A ++I DF L T+RE L L G G Sbjct: 117 RVVAAGDALIAPSVTRRLIADFTATPTTPKPHPEPLEHPHQIAQITDREREVLALVGQGL 176 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIAE+L +S T ++ KL+A +R+ A G + Sbjct: 177 SNAEIAERLIISAATAKTHVARLFAKLEARDRVHLAIIAFESGLV 221 >gi|238764023|ref|ZP_04624978.1| hypothetical protein ykris0001_15230 [Yersinia kristensenii ATCC 33638] gi|238697694|gb|EEP90456.1| hypothetical protein ykris0001_15230 [Yersinia kristensenii ATCC 33638] Length = 210 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + IA +L +S TV + + KLD + I + R G Sbjct: 149 LTPRERQILKLITEGSCNRIIATQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208 >gi|221133926|ref|ZP_03560231.1| putative transcriptional regulator, LuxR family protein [Glaciecola sp. HTCC2999] Length = 77 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 22/52 (42%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE G T+ I + L +S TV + + KL+ NR I Sbjct: 8 LSPREFQVANHITKGMTNRAIGDTLFISERTVKFHAANIYKKLNLKNRAGLI 59 >gi|331695588|ref|YP_004331827.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950277|gb|AEA23974.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 206 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE ++L DG T+ +I +L LS TV ++ KL R + AI G Sbjct: 146 LTEREADVVRLVVDGLTARQIGVRLVLSPRTVENHVQRIQRKLGVSGRAAMVRFAIENGL 205 >gi|328544840|ref|YP_004304949.1| Two component transcriptional regulator, LuxR family protein [polymorphum gilvum SL003B-26A1] gi|326414582|gb|ADZ71645.1| Two component transcriptional regulator, LuxR family protein [Polymorphum gilvum SL003B-26A1] Length = 221 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +L +S TV A++ + KL +R QA+ A R Sbjct: 152 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASR 208 >gi|229162035|ref|ZP_04290009.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228621441|gb|EEK78293.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 186 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K I+ Sbjct: 120 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKL 179 Query: 232 GYI 234 GYI Sbjct: 180 GYI 182 >gi|229185386|ref|ZP_04312569.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228598119|gb|EEK55756.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 186 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K I+ Sbjct: 120 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKL 179 Query: 232 GYI 234 GYI Sbjct: 180 GYI 182 >gi|226197773|ref|ZP_03793348.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|225930382|gb|EEH26394.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] Length = 251 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 23 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 74 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 75 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 131 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + + L + +R + Sbjct: 132 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 191 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 192 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 246 >gi|171911633|ref|ZP_02927103.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium spinosum DSM 4136] Length = 222 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTERETSCLQLAGDGYTS 191 FL V+ ++ LE F + SS L++RE +L G+G T+ Sbjct: 118 TFLTAVRTVLAGQRYMSSRLAASVLESFGQSKPRGSSSPIEKLSDREFEVFRLFGEGKTA 177 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +EIA +L LS TV+ + KL + I +A+R Sbjct: 178 KEIAAQLNLSPKTVSVHRDHIKEKLGFSTSAEMIRQAVRH 217 >gi|146281890|ref|YP_001172043.1| two-component response regulator [Pseudomonas stutzeri A1501] gi|145570095|gb|ABP79201.1| probable two-component response regulator [Pseudomonas stutzeri A1501] Length = 192 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + DG +++IA +L +S T+ A++ + KL R Q Sbjct: 119 AKAASAGLASLTPQQFRVLTMVCDGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQ 178 Query: 224 AIAKAIRFG 232 A + G Sbjct: 179 AALLLQQMG 187 >gi|118478475|ref|YP_895626.1| salavaricin two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196043050|ref|ZP_03110289.1| salavaricin two-component response regulator [Bacillus cereus 03BB108] gi|225865118|ref|YP_002750496.1| salavaricin two-component response regulator [Bacillus cereus 03BB102] gi|118417700|gb|ABK86119.1| salavaricin two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196026534|gb|EDX65202.1| salavaricin two-component response regulator [Bacillus cereus 03BB108] gi|225790282|gb|ACO30499.1| salavaricin two-component response regulator [Bacillus cereus 03BB102] Length = 204 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K I+ Sbjct: 138 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKL 197 Query: 232 GYI 234 GYI Sbjct: 198 GYI 200 >gi|78059869|ref|YP_366444.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77964419|gb|ABB05800.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 932 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A +LT +E LQL GY++ +AEKL +S TV +L + KL+ NR Sbjct: 861 EDGTALPAESLTRKELRVLQLLAQGYSNGALAEKLFVSDSTVRTHLRNINAKLNVPNRTS 920 Query: 224 AIAKAIRFGYI 234 A+A R G + Sbjct: 921 AVAAGRRLGLV 931 >gi|126440864|ref|YP_001058373.1| putative DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126220357|gb|ABN83863.1| putative DNA-binding response regulator [Burkholderia pseudomallei 668] Length = 279 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ + L G L + P L V+ Sbjct: 63 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 119 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 120 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217 >gi|288916220|ref|ZP_06410600.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288352411|gb|EFC86608.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 211 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 4/114 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTER 177 + G L+ A I +T + + L R Sbjct: 96 IMAGASGYLLKQIRGNDLVGAIRTIAAGRSLLDPAVTQKVLARLRDEPVEDEQLSALGAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+L +G T+ +IA + LS TV Y+ + KL +R QA A R Sbjct: 156 ERQILRLIAEGMTNRQIAACVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARL 209 >gi|302536960|ref|ZP_07289302.1| response regulator [Streptomyces sp. C] gi|302445855|gb|EFL17671.1| response regulator [Streptomyces sp. C] Length = 217 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 40/105 (38%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++A V + ++A +LT RE L G+G Sbjct: 113 AAVRTVARGEGLIAPAVTRRLIAEFAAPKAVRAPVRPGAAAAVESLTRREREVLGALGEG 172 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ EIA +L ++ TV ++ KL+ +R+QA A G Sbjct: 173 LSNAEIAVRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 217 >gi|251779454|ref|ZP_04822374.1| transcriptional regulator, LuxR family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083769|gb|EES49659.1| transcriptional regulator, LuxR family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 834 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E L L G ++ EI+E L + TV + + KL+ NRIQAI A FG Sbjct: 771 LTKSEIKILYLINKGMSNIEISEYLNIKKDTVKFHTKNIYSKLNVKNRIQAIKVAKEFGI 830 Query: 234 I 234 I Sbjct: 831 I 831 >gi|239993641|ref|ZP_04714165.1| LuxR family transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 209 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S LT RE L G TS++IAE L +S+ T + + KL+ + + Sbjct: 139 QKHVSPLSVLTRREREVFFLVVAGNTSKKIAELLDMSLKTAENHRSNIYKKLNLSSSAEL 198 Query: 225 IAKAIRFGYI 234 I A + G + Sbjct: 199 IRMAGKAGLL 208 >gi|229494564|ref|ZP_04388327.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] gi|229318926|gb|EEN84784.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] Length = 217 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + S+ + +++ + ++ + +LTERE L + G Sbjct: 118 QAVRVVASDHSLFSSDSLRA-------IVASAPRRQAPDLTPLASLTEREREVLTILATG 170 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + IAE+L L TV ++ S KL NR+ A A R G + Sbjct: 171 AANSVIAERLYLGESTVKTHISSLFAKLGVPNRVSASLIAFRCGLV 216 >gi|228991885|ref|ZP_04151821.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228767614|gb|EEM16241.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 189 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+ E LQL GY +EIA L S T++ ++ KLD + ++A+ K I+ Sbjct: 120 EELTDSEKQILQLLCGGYKRKEIATMLYASERTISNHIQHMFDKLDVSSSLEAVTKGIQL 179 Query: 232 GYI 234 GYI Sbjct: 180 GYI 182 >gi|188588839|ref|YP_001922350.1| transcriptional regulator, LuxR family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499120|gb|ACD52256.1| transcriptional regulator, LuxR family protein [Clostridium botulinum E3 str. Alaska E43] Length = 834 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E L L G ++ EI+E L + TV + + KL+ NRIQAI A FG Sbjct: 771 LTKSEIKILYLINKGMSNIEISEYLNIKKDTVKFHTKNIYSKLNVKNRIQAIKVAKEFGI 830 Query: 234 I 234 I Sbjct: 831 I 831 >gi|111223193|ref|YP_713987.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111150725|emb|CAJ62426.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 211 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 46/154 (29%), Gaps = 15/154 (9%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----------EFLM 140 + + + L + I L+ Sbjct: 55 LDARLEDGNGIDVCRDLRSAHPEIGCLILTSYDDDDALFAAIMAGAAGYLLKQIKGTDLV 114 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAE 196 A I +T + + A L ERE L L +G T+ +IA Sbjct: 115 GAIRTIAAGRSLLDPAVTQRVLTRLREGPAEDRKLAALGERERQILVLIAEGLTNRQIAG 174 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ LS TV Y+ + KL+ +R QA A R Sbjct: 175 RIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 208 >gi|52138494|dbj|BAD46749.1| transcriptional regulator falA [Fluoribacter dumoffii] Length = 219 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 2/107 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 ++G + +A ++ L + + S L+ERE + + Sbjct: 105 ESGAEEMAAAIRKVAKGERYLIAEIAQKM--AINSLEEVQGSPFDLLSEREMQVMLMITT 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EI+++L LS T+N Y KL N ++ A++ G I Sbjct: 163 GMNVQEISDRLFLSTKTINGYRYRTFEKLGIKNDVELTYLALKHGII 209 >gi|83952281|ref|ZP_00961013.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM] gi|83837287|gb|EAP76584.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM] Length = 219 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + + L+ RE L L DG T+ +I+ +LGLS +TV YL + KL +R Sbjct: 149 LRRLTNDTSDALSRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLGVNSRG 208 Query: 223 QAIAK 227 AIAK Sbjct: 209 GAIAK 213 >gi|307295174|ref|ZP_07575013.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878677|gb|EFN09896.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 207 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 7/148 (4%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + L + + + + A Sbjct: 54 LDVRMPDMDGLAVQRELRARGIMLPVVIMTGHGDIDMAVTAMKAGASDFIEKPFEKAALL 113 Query: 152 ACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 C + + ++ A + LT+RE L +G ++ IA LG+S T Sbjct: 114 GCVEAARQVAVADRGANARAGDARARLNILTDREREVLDGLVEGLPNKTIAYDLGISPRT 173 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232 V + + KL+ + +A+ A G Sbjct: 174 VEIHRANLMQKLEVKSLAEALRIAFHAG 201 >gi|269217647|ref|ZP_06161501.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 848 str. F0332] gi|269212582|gb|EEZ78922.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 848 str. F0332] Length = 212 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 43/99 (43%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 +E + + +T + L+E+E L LA +G T+ +IA Sbjct: 112 AEAIRATASGRTVLDERAARAVTQSVRGGSSADGGVEELSEQEKRVLALAAEGMTNRQIA 171 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+ TV Y A KLD V+R A+ +A+R G I Sbjct: 172 TALGVGAATVKTYFSRAFAKLDVVDRTSAVVEAMRRGEI 210 >gi|302877496|ref|YP_003846060.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302580285|gb|ADL54296.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 215 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L+ G +++EIA L+ TV ++ + L R++A+ A R G Sbjct: 149 GLTPRQMEVLEHICAGMSNKEIASHTHLAEGTVKIHVAAVYQTLKVNGRLEAVRVAERLG 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|261418524|ref|YP_003252206.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765338|ref|YP_004130839.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374981|gb|ACX77724.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110204|gb|ADU92696.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 221 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 TERE + L G +++EIA++L LS TV Y+ S K +R Q Sbjct: 162 TERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214 >gi|190576052|ref|YP_001973897.1| putative LuxR family two-component response regulator [Stenotrophomonas maltophilia K279a] gi|190013974|emb|CAQ47614.1| putative LuxR family two-component response regulator [Stenotrophomonas maltophilia K279a] Length = 212 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 36/76 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F + ERE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 137 RARYRFHDEAPPTDTFGEREVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGT 196 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 197 RDRTRAVLKAITLRII 212 >gi|152997016|ref|YP_001341851.1| two component LuxR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150837940|gb|ABR71916.1| two component transcriptional regulator, LuxR family [Marinomonas sp. MWYL1] Length = 217 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT ++ L +G +++IA +L +S TV A++ + KL+ NR QA+ A Sbjct: 150 ELTPQQYKVLCYLHEGLLNKQIAYELSISEATVKAHITAIFRKLEINNRTQAVLVASDLK 209 Query: 233 Y 233 Sbjct: 210 L 210 >gi|197284103|ref|YP_002149975.1| two-component response regulator [Proteus mirabilis HI4320] gi|227358025|ref|ZP_03842367.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194681590|emb|CAR40570.1| two-component response regulator [Proteus mirabilis HI4320] gi|227161760|gb|EEI46792.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 210 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 C + + +K A +LT RE L G + IA +L LS TV+ + Sbjct: 123 CYLCADAMKALRQTPEKE-DALHSLTPREREIFNLLVQGINVKAIAVQLNLSHKTVHVHR 181 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ I + A+ I Sbjct: 182 ANILGKLNCETTIDLVHFALNNQLI 206 >gi|167566181|ref|ZP_02359097.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] Length = 205 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 6/117 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARNLTE 176 +R G + + S ++ + A + + +S LT Sbjct: 82 IRFGASGY-LLKWCSPDGIVQAVRRVMAGRVHIDPSLDEARVASAAGGRTLASPVDKLTR 140 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L DG + EIA L +S TV+ + KL A N I A R+GY Sbjct: 141 REKQILKLIVDGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 197 >gi|226195323|ref|ZP_03790912.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|254298568|ref|ZP_04966020.1| putative DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157808332|gb|EDO85502.1| putative DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|225932525|gb|EEH28523.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] Length = 275 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ + L G L + P L V+ Sbjct: 59 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 115 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 116 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 176 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 213 >gi|301060037|ref|ZP_07200911.1| putative Transcriptional regulatory protein FixJ [delta proteobacterium NaphS2] gi|300445916|gb|EFK09807.1| putative Transcriptional regulatory protein FixJ [delta proteobacterium NaphS2] Length = 208 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 30/192 (15%) Query: 71 TYGDDFLFHFNSGLLP-------IIWQSIQ--EETVIESSGQLSVRLEGG---------L 112 D + LL ++ + + G L + + L Sbjct: 11 VDDDPSVRRALERLLRSTGHEARTFASALDFIDYEHPDVPGCLVLDVRMPKLNGLDLQDL 70 Query: 113 LPFAGIAFPV-------RLGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLEL 163 L G + PV + +FL E ++EA + Sbjct: 71 LIKKGNSIPVIFITGHGTVPDSVRALKGGAVDFLQKPFEDGDLLEAVSRGIENHRHERRK 130 Query: 164 FKK---RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 K+ + LT RE G +++IA LG+S T+ + K+ A + Sbjct: 131 QKEMKILRARLNTLTPREREVFGFVISGMLNKQIAYDLGISEKTIKVHRAKVMQKMGAGS 190 Query: 221 RIQAIAKAIRFG 232 + A + G Sbjct: 191 LADLVRFAEKLG 202 >gi|237507769|ref|ZP_04520484.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|234999974|gb|EEP49398.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] Length = 235 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+ A P +L Sbjct: 7 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRID-ASGEPVDFELFGMTVAMHRA 62 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 L D S ++ + +E S Sbjct: 63 YVSRYRPL-----DPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 115 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + + L + +R + Sbjct: 116 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 175 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 176 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 230 >gi|227818570|ref|YP_002822541.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|36958825|gb|AAQ87250.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227337569|gb|ACP21788.1| transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 240 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 7/110 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTERETSC 181 G F + A A ++ + L S + LT ++ Sbjct: 122 AGINGFVPKHAARDEFRAAFAAIARGEIHAPQMALEPGSPSLSDEAVARLGLLTRQQAKI 181 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LQL G +++IA +L ++ TV A++ + KL R+QA+ A Sbjct: 182 LQLVCAGLMNKQIAYELSIAETTVKAHVTAIMRKLGVQTRMQAVLFAQEA 231 >gi|73748854|ref|YP_308093.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660570|emb|CAI83177.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] Length = 247 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L + GYT++EI+ L + T+ Y+ KL+ NR A A Sbjct: 183 PQDVLSPRELEILIMVARGYTNKEISVNLDYAEITIKKYVKGIMTKLNVSNRTLAGIAAA 242 Query: 230 RFGYI 234 +FG + Sbjct: 243 KFGLV 247 >gi|147669614|ref|YP_001214432.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270562|gb|ABQ17554.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 247 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L + GYT++EI+ L + T+ Y+ KL+ NR A A Sbjct: 183 PQDVLSPRELEILIMVARGYTNKEISVNLDYAEITIKKYVKGIMTKLNVSNRTLAGIAAA 242 Query: 230 RFGYI 234 +FG + Sbjct: 243 KFGLV 247 >gi|325068789|ref|ZP_08127462.1| two component system response regulator [Actinomyces oris K20] Length = 251 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L L G ++ I E+L ++ TV +++ + K NR++ + A+ Sbjct: 186 EALTVREDAVLALVCQGLSNASIGERLHVAESTVKSHVKTILGKTGCHNRVELVIYALTT 245 Query: 232 GYI 234 G + Sbjct: 246 GLV 248 >gi|315225545|ref|ZP_07867355.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] gi|314944489|gb|EFS96528.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] Length = 216 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 6/199 (3%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD-DFLFHFNSGLLPI 87 +A +FA++ ++ + + + + ++ + D + + + + Sbjct: 23 EAGSFAVFLLDRFGRYYYVTEYVENIDTP----QELDIEKLVHPDDLEVVRRIDKKVWEF 78 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 + +++ EE + +R+ I L F + ++ L Sbjct: 79 L-ETLPEEEKLTYKYIYEMRVLDRGKYVRMIYQMRILAFKDDNFLGMGIIDLAPEQSANT 137 Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +TD + F S+ LT RE L LA +G S+EI+EKL +S+HTVN Sbjct: 138 SVRFQIKNCLTDEIVPFAIESATDTLLTPREREILALAKEGMFSKEISEKLNISIHTVNR 197 Query: 208 YLGSATVKLDAVNRIQAIA 226 + + KL N I+AI Sbjct: 198 HRQNILEKLQVDNMIEAIR 216 >gi|311900673|dbj|BAJ33081.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 194 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R +T+RE L L G G ++ EIAE L ++ TV AY+ KLDA +R+ + A Sbjct: 127 RGITDREREVLTLIGRGLSNAEIAEALFITAATVKAYVTRLLAKLDARDRVHLVITAYEH 186 Query: 232 GYI 234 G + Sbjct: 187 GLV 189 >gi|300786261|ref|YP_003766552.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795775|gb|ADJ46150.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A +++A + E L+ +E L L +G T+ +IAE+ Sbjct: 118 RTVAAGGSLLDATLTASVMNKLRGENVAAPDPRYEQLSPQERRVLDLVAEGLTNRQIAER 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L L+ TV Y+ S KL R A Sbjct: 178 LFLAEKTVKNYVSSVLHKLGVERRTSAAVY 207 >gi|258623282|ref|ZP_05718288.1| Glycerol metabolism activator [Vibrio mimicus VM573] gi|262171536|ref|ZP_06039214.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus MB-451] gi|258584414|gb|EEW09157.1| Glycerol metabolism activator [Vibrio mimicus VM573] gi|261892612|gb|EEY38598.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus MB-451] Length = 222 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 16/124 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------- 169 + + G + + A I+ + D L K S Sbjct: 91 VLQTLAYGAVGYVAKSCARQQMGEAFAQILRGD---VYLPADILRENVKTSPNHSLRNQA 147 Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT ++ LQ G +++IA L +S TV +++ + KL NRIQA Sbjct: 148 GFSAETLQTLTRKQLQVLQFMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQA 207 Query: 225 IAKA 228 + A Sbjct: 208 VLGA 211 >gi|253998833|ref|YP_003050896.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200921|ref|YP_004039579.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985512|gb|ACT50369.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312440237|gb|ADQ84343.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 210 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 10/105 (9%) Query: 140 MLANEVIIEAHGACY----QVITDFLELFKKRSS------AARNLTERETSCLQLAGDGY 189 E II A A + ++ EL S L++RE G Sbjct: 105 DAEPEEIISAIRAIANGKRYISSELAELMTNELSHPTEKQLHETLSDREFQVFFKLAGGL 164 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIA++L +SV TV+ Y K+ AI+ G I Sbjct: 165 SATEIADELCISVKTVSTYRTRILEKMSLKTNADLTYYAIKNGLI 209 >gi|86748488|ref|YP_484984.1| response regulator FixJ [Rhodopseudomonas palustris HaA2] gi|86571516|gb|ABD06073.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 205 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + + ++L+ RE + G +++ IA + +S T+ Y + K+ A + Sbjct: 131 AVSQDIVARIQSLSPRERQVMDGLIAGMSNKVIAREFDISPRTIEVYRANVMTKMQAGSL 190 Query: 222 IQAIAKAIRFGYI 234 + + A+R G I Sbjct: 191 SELVRMAMRGGVI 203 >gi|50121806|ref|YP_050973.1| response regulator [Pectobacterium atrosepticum SCRI1043] gi|49612332|emb|CAG75782.1| two-component response regulator [Pectobacterium atrosepticum SCRI1043] Length = 218 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQTDAPLECLSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AI+ G Sbjct: 193 INGDVELTHLAIKHGL 208 >gi|120597637|ref|YP_962211.1| response regulator receiver protein [Shewanella sp. W3-18-1] gi|146294224|ref|YP_001184648.1| response regulator receiver protein [Shewanella putrefaciens CN-32] gi|120557730|gb|ABM23657.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1] gi|145565914|gb|ABP76849.1| transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] Length = 209 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++ + Q + E+ + + LT RE + +Q G ++EIA +L +S Sbjct: 112 DRTLLSKMFRRVVQKLEGNNEMPSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCIS 171 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 HTV A++ S K + NR++ + A Sbjct: 172 EHTVKAHISSIFRKTQSRNRVELLRWA 198 >gi|322831866|ref|YP_004211893.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321167067|gb|ADW72766.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 216 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA L +S +TV +L + K+ NR QA + A Sbjct: 155 GLTHREKEILNKLRVGASNTEIARLLFISENTVKTHLYNLFRKISVKNRTQAASWA 210 >gi|290955399|ref|YP_003486581.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260644925|emb|CBG68011.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 245 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LTERE ++L G+T+ EIA + +S+ TV +LGS +KL A NR++ Sbjct: 172 PGAPRSQEALTERELDVVRLVALGHTNAEIAASMFVSLSTVKTHLGSIQLKLAARNRVEI 231 Query: 225 IAKAIRFG 232 A A R G Sbjct: 232 AAWAWRTG 239 >gi|115526773|ref|YP_783684.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520720|gb|ABJ08704.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 223 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|318042460|ref|ZP_07974416.1| two-component response regulator [Synechococcus sp. CB0101] Length = 201 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 6/148 (4%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEV 145 +I + + + L +A + V+ + + A + Sbjct: 48 DAIAFCRSDDPPDLVILDLALPDGDGLAVAQALAEHHPNPQVVVLSGQASSFVCPAALQP 107 Query: 146 IIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +I + ++ A LT R+ L G G T++EIA+ LS+ T Sbjct: 108 LIAGVVDKTSAFHQLTSVLERCLPQSAEPLTPRQQEIYGLIGQGLTNKEIAKTTNLSIAT 167 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232 V + + KL + + +A G Sbjct: 168 VETHRKAIAQKLGVSG-AELVRQASLLG 194 >gi|317407768|gb|EFV87695.1| hypothetical protein HMPREF0005_03216 [Achromobacter xylosoxidans C54] Length = 223 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L L G T E+A +L +S TV + + KL+ N + +A A+R Sbjct: 161 ESLTRREQQILALIATGATGTEVARRLYISPLTVRKHRENLMRKLEVHNTAELVAYAVRL 220 Query: 232 GY 233 G Sbjct: 221 GI 222 >gi|294625489|ref|ZP_06704118.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665263|ref|ZP_06730559.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600210|gb|EFF44318.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604978|gb|EFF48333.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 210 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F+ + + +ERE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 135 RARYQFRDQQAPRETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 195 RDRTRAVLKAITLRVI 210 >gi|302557670|ref|ZP_07310012.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|302475288|gb|EFL38381.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] Length = 222 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 37/84 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + + + ++ + L+ R +Q G T++EIA +L +S+ TV ++L Sbjct: 134 LRLLKHLNESQAMPRGGAARSSELSGRALEVVQAIARGRTNQEIAAELFISLSTVKSHLS 193 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL NR + A + Sbjct: 194 GIQTKLGVRNRTEIAVWAWENRVV 217 >gi|170726344|ref|YP_001760370.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC 51908] gi|169811691|gb|ACA86275.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Shewanella woodyi ATCC 51908] Length = 205 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+R+ L G ++ EI+ L +S+ TV +L +L NR+QA+ Sbjct: 129 ELTQRQHEILHWVKLGKSNWEISTILSISIDTVKFHLRGIYKRLGVSNRVQAV 181 >gi|84684208|ref|ZP_01012110.1| two-component response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84667961|gb|EAQ14429.1| two-component response regulator [Rhodobacterales bacterium HTCC2654] Length = 215 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR---NLTER 177 L +GY+ + ++ +H V + F + A LT+R Sbjct: 94 LSAGADGYLQKDQTQDQMVAQLRQISHGIPALSPAVARRIMGHFSRTGPVANDDGKLTDR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L L G + E+A +LGL+ TV Y+ + KL +R +A A R G Sbjct: 154 ETDVLALISRGLRNAEVARELGLAESTVAGYIKTIYRKLGISSRAEAAWHATRLGL 209 >gi|284045055|ref|YP_003395395.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949276|gb|ADB52020.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 364 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R+ L+ RET L+ G G ++IA +L LS TV +L + KL AV+R QA Sbjct: 295 RQRALDPCPLSARETEVLKRLGQGKVYKQIAHELELSTSTVRTHLHNIYGKLGAVDRAQA 354 Query: 225 IAKAIRFGYI 234 + A G+I Sbjct: 355 VLIATERGWI 364 >gi|240169124|ref|ZP_04747783.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 1092 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E + L G+G ++++IA +L +S TV +L KLD +R+Q +A+R Sbjct: 1032 ESLTPAEREVVSLVGEGLSNKDIAARLFVSPRTVQTHLTHVYTKLDLNSRVQLAQEAVRH 1091 >gi|239813946|ref|YP_002942856.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239800523|gb|ACS17590.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 247 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G++ EIA GLSVHTV ++ + KL ++ +A+ +A R G Sbjct: 183 LSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFEATRLGL 242 Query: 234 I 234 + Sbjct: 243 L 243 >gi|302540939|ref|ZP_07293281.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458557|gb|EFL21650.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 214 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVIT 158 + AG + F ++ + T + ++ +QV+ Sbjct: 84 FDLDAYAYEGLRAGASGFLLKDARPEEIVAGIHAVATGDAVVAPRLTRRLLDAYAHQVLA 143 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L++RE L G G+T+ EIAE+L L+ TV ++G K+ A Sbjct: 144 PPGTPAED--PRLHTLSDREREVLVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGA 201 Query: 219 VNRIQAIAKAIRF 231 +RIQA+ +R Sbjct: 202 RDRIQAVIMGVRH 214 >gi|296136746|ref|YP_003643988.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] gi|294340903|emb|CAZ89298.1| Transcriptional regulatory protein fixJ [Thiomonas sp. 3As] gi|295796868|gb|ADG31658.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] Length = 204 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 12/134 (8%) Query: 108 LEGGLLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLAN----------EVIIEAHGACYQ 155 L G + P+ G + T + + +++ + Sbjct: 67 ELQDELLHRGCSMPLVFITGHGDVPMAVDTMKKGAIDFIEKPFNEVVLRDLVDRMLQKAR 126 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + D + R + LT RE+ L+ G +++IA+ L +S+ TV A+ + K Sbjct: 127 LTADQQQAEASRGALLGRLTARESQVLERIVAGRLNKQIADDLNISIKTVEAHRANIMEK 186 Query: 216 LDAVNRIQAIAKAI 229 L+ + A+ Sbjct: 187 LNVSTVADLLKIAL 200 >gi|239983739|ref|ZP_04706263.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291455547|ref|ZP_06594937.1| two component transcriptional regulator [Streptomyces albus J1074] gi|291358496|gb|EFE85398.1| two component transcriptional regulator [Streptomyces albus J1074] Length = 225 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 32/79 (40%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ + LT RET +L G+T+ EI L +S T ++ + Sbjct: 140 RLLQTLTPSAPAPPTRLTPLTARETEIARLVAQGHTNAEIGMTLSISPGTAKTHIANIQT 199 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL A NR+ A G Sbjct: 200 KLKARNRVGIAAWTWENGL 218 >gi|212715195|ref|ZP_03323323.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM 16992] gi|212661876|gb|EEB22451.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM 16992] Length = 218 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 13/178 (7%) Query: 65 PNILIETYGDDFLFHFNS-----GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + T GD+ + LL + + + +L + Sbjct: 38 YVVWTATSGDEAIERCQDANSNVSLLILDMSMEGLQGPATCRRLRLMGKHMPILGATSFS 97 Query: 120 F-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAAR 172 R + G + II +V+ F + + A Sbjct: 98 IKSYRDKLVEAGAQGLVGKENADQLAQII-MRMCNGEVMEGFETPALANLRISREAETAP 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE + L +G EIAE+L +S T+ ++ S KL+ QA+A +R Sbjct: 157 SLTVREEQIISLCAEGMLDREIAERLRISEATIRKHIQSILRKLNCKTSRQAVALWVR 214 >gi|134101534|ref|YP_001107195.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008185|ref|ZP_06566158.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914157|emb|CAM04270.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 237 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 3/106 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY+ L V A V + +A L+ RE + Sbjct: 96 GAAGYLTRGHSIAELVRTVRSAAAGEFRCSPCVAAALSPGAAQSIVSAGLLSHREAEIAE 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L G +++EIA +L +++ TV ++ + KL R +A A A Sbjct: 156 LLEQGLSNQEIARRLCIALATVKNHVHNILDKLGVRGRAEAAAWAR 201 >gi|120402652|ref|YP_952481.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955470|gb|ABM12475.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 17/167 (10%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFT 135 P+ + + Q + + + + +GYV+ + Sbjct: 51 TPVDIAILDIAMPRMTGLQAAREISRKYPHVRILILSMHDNEQYFFEALRAGASGYVLKS 110 Query: 136 SEFLMLANEVIIEAHG-------ACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGD 187 L L G A +I D+L +T RE L+L + Sbjct: 111 VADLDLLKACRATLRGEPFVYPGAVTALIQDYLNRARHGDDLPGTIVTSREEEVLKLIAE 170 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY++ EIA LG+S TV+ + + KL +R+ AIR G I Sbjct: 171 GYSTREIAGTLGISAKTVDRHRANLLAKLGLRDRLALTRYAIRVGLI 217 >gi|74316369|ref|YP_314109.1| LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055864|gb|AAZ96304.1| Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 258 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 10/146 (6%) Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA------ 149 + + + LE L F G+ R+ GY F+ + + + Sbjct: 107 DDPDGWHRRLLDLELKNLAFHGLC---RVDGQMWGYASFSRLRVPFDARLALFMELLLPH 163 Query: 150 -HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +V+ + A +T RE L DG T+EEIA LGLS+ TV + Sbjct: 164 LLVTLARVLANEARTRSLGDRHAGLITAREAEVLAWVRDGKTNEEIAAILGLSMLTVKNH 223 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L A KL R QA+A+AI G++ Sbjct: 224 LRHAMQKLVVRTRGQAVARAIALGFL 249 >gi|119386432|ref|YP_917487.1| response regulator receiver protein [Paracoccus denitrificans PD1222] gi|119377027|gb|ABL71791.1| transcriptional regulator, LuxR family [Paracoccus denitrificans PD1222] Length = 290 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 9/186 (4%) Query: 52 CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI---QEETVIESSGQLSVRL 108 L +Y L W + + + + ++ + Sbjct: 55 VLLSSYSPYLMQELASLDLFESAPMHRWIIQNRGSESWDWMQRCRLAGRLSPREERAMDV 114 Query: 109 EGGLLPFAGIAFPVRLGFHKN---GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 AG A + + V T + + HG ++ + L Sbjct: 115 FARYGHVAGYAVGMGDDVERIRAGVIVSGTIGMRQDRLDALWAQHGRLVGALSGVMHLRI 174 Query: 166 KRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 A LT R+ L+ G+T++EIA+ L ++ TV +L A L A Sbjct: 175 STLPHAERECVLTLRQREVLECISAGHTTQEIAQILEVTPATVEKHLRLARRALGAKTTA 234 Query: 223 QAIAKA 228 QAI A Sbjct: 235 QAILLA 240 >gi|332159933|ref|YP_004296510.1| putative two-component response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607515|emb|CBY29013.1| secretion system regulator of DegU/UvrY/BvgA type [Yersinia enterocolitica subsp. palearctica Y11] gi|325664163|gb|ADZ40807.1| putative two-component response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862444|emb|CBX72602.1| hypothetical protein YEW_HP33970 [Yersinia enterocolitica W22703] Length = 210 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + IA +L +S TV + + KLD + I + R G Sbjct: 149 LTPRERQILKLITEGSCNRIIASQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208 >gi|323345593|ref|ZP_08085816.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323093707|gb|EFZ36285.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 318 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIA L +S +TV + + KL + AI Sbjct: 249 ETLSDREKDVIVSLVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 308 Query: 232 GYI 234 I Sbjct: 309 NLI 311 >gi|213583489|ref|ZP_03365315.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 84 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Query: 157 ITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + ++L ++ + LTERE L G ++++IA L +S TV ++ + Sbjct: 3 VNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLL 62 Query: 214 VKLDAVNRIQAIAK 227 KL+ +R+ A Sbjct: 63 RKLNVRSRVAATIL 76 >gi|149927753|ref|ZP_01916005.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Limnobacter sp. MED105] gi|149823579|gb|EDM82809.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Limnobacter sp. MED105] Length = 223 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ + G +++EIA KL LS T+ +L +++ NR QA++ Sbjct: 156 QLTHKQQQVMHFLASGLSNKEIARKLDLSPETIKTHLREIFTRMNVKNRTQAVSL 210 >gi|326774525|ref|ZP_08233790.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326654858|gb|EGE39704.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G L + R A LT RE L Sbjct: 105 AGAIGYLLKDATRDQLVEAVHSAARGETVLAPRVAARLVARMRRPAPVTLTPREVDVLGA 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ EI +L ++ TV +L KLD +R A+ +A+ + Sbjct: 165 VADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214 >gi|291006472|ref|ZP_06564445.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 11/154 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML-----ANEVI 146 + + ++ L + F + L A +++ Sbjct: 57 LDLRLPDAMASEIVAPLREAAPAARILVFTAYRDHAALQATLDAGVDGCLLKDAGATDLV 116 Query: 147 IEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGL 200 H A + + + ++ + R+ LT+RE L+ A G T+ EIA++LGL Sbjct: 117 SAVHQAAHGIPIFDPRVGERAAPRMRSRLHDTGLTQREYDVLRHAAAGRTNPEIADQLGL 176 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + HTV YL +A KL+A NRI+ IAKA + G + Sbjct: 177 TRHTVTGYLRNAMRKLNARNRIELIAKAAQSGLL 210 >gi|229824282|ref|ZP_04450351.1| hypothetical protein GCWU000282_01587 [Catonella morbi ATCC 51271] gi|229786255|gb|EEP22369.1| hypothetical protein GCWU000282_01587 [Catonella morbi ATCC 51271] Length = 199 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LT +E + +G +++E+A++L LS TV Y+ + KL A NR Sbjct: 127 ELVDRLFTHHNPLTPQERQLMAGVREGLSNKELAQELHLSEGTVRNYMSTVLQKLSAKNR 186 Query: 222 IQAIAKAIRFGY 233 AI G+ Sbjct: 187 ADAIRICQENGW 198 >gi|254282747|ref|ZP_04957715.1| monoamine regulon transcriptional regulator [gamma proteobacterium NOR51-B] gi|219678950|gb|EED35299.1| monoamine regulon transcriptional regulator [gamma proteobacterium NOR51-B] Length = 239 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 9/146 (6%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-----TSEFLMLANEV 145 S + +R G + F Sbjct: 80 EDVHRHWDPSDDSYFREFMIPQGVHYEMEVFLRDGSQIVAGISLLRSKDIGPFSSEDRCR 139 Query: 146 IIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + H + + NL+ R+ ++L +G ++++++ LG+S Sbjct: 140 LESVHDYIQYALNSHILPKKDSETDLLVRQYNLSPRQIEVVRLLREGASNKKLSAHLGIS 199 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAK 227 + TV ++ K+ +R ++K Sbjct: 200 LPTVKTHISQIFEKVGVRSRTDLLSK 225 >gi|116073982|ref|ZP_01471244.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069287|gb|EAU75039.1| two-component response regulator [Synechococcus sp. RS9916] Length = 249 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 42/104 (40%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + F + + ++T + + + T RE S LQL +G Sbjct: 145 LLTEAARFADADVGQMAKQISEIRSMLTGSADAAASPDTPQLSFTPREASVLQLVAEGLM 204 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA +L S+ V Y+ +K +R + + A++ + Sbjct: 205 NKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRFALQHHLV 248 >gi|111220151|ref|YP_710945.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147683|emb|CAJ59339.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 213 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 36/79 (45%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 VI F + LT RE + L G G +++EIA +L +S T ++ VK Sbjct: 135 VIDTFARRPAVTAPDLSGLTVREREVMSLVGRGMSNDEIAARLVISPATARTHVSRVMVK 194 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L A +R Q A + G + Sbjct: 195 LAARDRAQLAVLANQAGLV 213 >gi|78184554|ref|YP_376989.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78168848|gb|ABB25945.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 228 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E + A + + L + + LT RE L G T +EIAE L +S Sbjct: 136 EAAVLAVMGHHSYRSPSLRGRELPYLSCPRLTPREYEVLDRLARGMTDKEIAEALVVSEQ 195 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T Y L+ NR+QA+ K +R G + Sbjct: 196 TSRTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226 >gi|333028632|ref|ZP_08456696.1| putative LuxR family DNA-binding response regulator [Streptomyces sp. Tu6071] gi|332748484|gb|EGJ78925.1| putative LuxR family DNA-binding response regulator [Streptomyces sp. Tu6071] Length = 212 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +I ++L+ ++ A LT RE L+L +G++S++IA L +SV TV + + Sbjct: 129 ALIRNYLDQARRGEEPAGGSTLTPREEEILKLVAEGHSSKDIAALLVISVKTVERHRANT 188 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R++ AIR G + Sbjct: 189 LHKLGLKDRLELTRYAIRAGLV 210 >gi|330837581|ref|YP_004412222.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] gi|329749484|gb|AEC02840.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] Length = 528 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 156 VITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +I + + ++ A++ L+ RE + +G ++ EIA++L +S +TV A+ Sbjct: 427 LIQARRMMDEANNALAKSVVLYNLSPREQQVAKFIMEGKSNSEIAKELFISANTVKAHTS 486 Query: 211 SATVKLDAVNRIQA 224 K A +R + Sbjct: 487 HVYEKTGATHRSEL 500 >gi|312196703|ref|YP_004016764.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228039|gb|ADP80894.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 225 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 V + L Q + + A N+TERE L L +G Sbjct: 117 VHAVHLVRDGGALLAPSATRL-LIDAQAHAPARR-QETSMALAGNVTEREREVLVLVAEG 174 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +IA++L +S TV ++L S K + R+Q + A G + Sbjct: 175 LANADIADRLSISPLTVKSHLSSLLAKHNLATRVQLVVLAYESGLV 220 >gi|269959786|ref|ZP_06174165.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835540|gb|EEZ89620.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 202 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L +++ LT RE QL G + IA +LGLS TV+ + +A KL N Sbjct: 130 LATPSDKAATLTQLTRRENEVCQLLARGLDVKSIATELGLSHKTVHVHRANAMDKLGVKN 189 Query: 221 RIQAIAK 227 ++ Sbjct: 190 NVELAKL 196 >gi|3868876|dbj|BAA34262.1| response regulator [Rhodococcus erythropolis] Length = 209 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 EV+ + + + ++R L+ RE +++ G T+ E+AE+L +S Sbjct: 116 REVMAGDDFVSLRAAAPGVGVRERRKDTDIDALSARELEVMRMVAAGLTTSEVAERLTVS 175 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ S KL R + A+ G + Sbjct: 176 PRTVESHRASIQRKLHVRTRAEMARIALDEGLL 208 >gi|326388178|ref|ZP_08209781.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207344|gb|EGD58158.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 208 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 14/152 (9%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + + + I L + + + + ++ Sbjct: 52 LDVNMPGMNGIDVLDAVRKRGDHRPIILLTAELTDRQLMAAMRAGIEGIVLKDGSEDELL 111 Query: 148 EAHG--------ACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +A ++ L L + L+ RE +L G + +I + Sbjct: 112 DALAQVSRGKKAIAPALLQRALDLSLHPETEGPLDRLSTRERRIARLVARGMRNRDIGAE 171 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + + TV YL KL+ NR + AI Sbjct: 172 MNIGEGTVKVYLHGIYQKLNIDNRTELALLAI 203 >gi|300788038|ref|YP_003768329.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797552|gb|ADJ47927.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E ++ + ++ A LT+RE+ + G T+ EIA+ Sbjct: 119 RAAANGEALVSPSVTVRLLARFTERARRRAQGAPDLLTDRESDVVLAVAQGRTNAEIADD 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S+ TV +L + KL+ NR + A + G + Sbjct: 179 LRVSLSTVKTHLTNVQRKLELRNRTEIAIWAWQRGLL 215 >gi|296139583|ref|YP_003646826.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027717|gb|ADG78487.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 213 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 VIT +LT RE L G G ++ +IA +L + TV ++ + Sbjct: 132 AVITSLPAPPTAVHPDLSSLTGRERDVLAGLGAGLSNYQIARRLEIGEATVKTHVSRVLM 191 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL +R+QA A + G Sbjct: 192 KLGVQSRVQAAVIAAQSGL 210 >gi|163786374|ref|ZP_02180822.1| two component transcriptional regulator, LuxR family protein [Flavobacteriales bacterium ALC-1] gi|159878234|gb|EDP72290.1| two component transcriptional regulator, LuxR family protein [Flavobacteriales bacterium ALC-1] Length = 209 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 157 ITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + L R S + + L+ RE L+L G ++EIA++L ++ TV+ Y Sbjct: 129 MDKHLRYEDTRKSRSRMFKKLSTREVEVLKLLSIGRKNKEIAQELDINEKTVSTYKARLF 188 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KL+ N I I +A Sbjct: 189 KKLNVTNIIDLIHQAKHHNL 208 >gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 282 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE S L L G ++EIA +L SV V Y+ K +R + + A++ G Sbjct: 222 TPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGL 280 >gi|94314242|ref|YP_587451.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] gi|93358094|gb|ABF12182.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] Length = 206 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R+ L+ERE L + G TS EIA LGLS TV+ ++ A KL R++A Sbjct: 135 QQRTPQNVTLSEREIEALSWSARGKTSGEIATILGLSKRTVDFHIDRAREKLGVATRVEA 194 Query: 225 IAKAIRFGYI 234 + +A G+I Sbjct: 195 VVRAATEGFI 204 >gi|262373728|ref|ZP_06067006.1| glycerol metabolism activator [Acinetobacter junii SH205] gi|262311481|gb|EEY92567.1| glycerol metabolism activator [Acinetobacter junii SH205] Length = 216 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 135 FDPRAADETALAERLQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 195 GVQNRTQAV 203 >gi|226953416|ref|ZP_03823880.1| two-component response regulator [Acinetobacter sp. ATCC 27244] gi|226835847|gb|EEH68230.1| two-component response regulator [Acinetobacter sp. ATCC 27244] Length = 217 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 135 FDPRAADETALAERLQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 195 GVQNRTQAV 203 >gi|144897377|emb|CAM74241.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 208 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 32/68 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R A LT R+ L + G +++EIA L L+ TV ++ + L NR QA Sbjct: 141 GRDQARNVLTPRQRDVLAMLRQGKSNKEIARDLNLAEITVKLHVTAILRALGVENRTQAA 200 Query: 226 AKAIRFGY 233 A + GY Sbjct: 201 ILAAKIGY 208 >gi|332142526|ref|YP_004428264.1| DNA-binding response regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552548|gb|AEA99266.1| DNA-binding response regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 205 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+++E S L+LA +G +++IA L LS TV YL A KLDA NR+ A A + G Sbjct: 144 PLSKKEMSALKLASEGLKTQDIARSLFLSEGTVRNYLSEAISKLDATNRVDAARIAKQKG 203 Query: 233 YI 234 ++ Sbjct: 204 WL 205 >gi|46202045|ref|ZP_00053874.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 211 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L + G +++EIA L L+ TV ++ + L NR QA A + G Sbjct: 152 LTPRQRDVLGMLRQGKSNKEIARDLSLAEITVKLHVTAILRALGCENRTQAAILAAKMG 210 >gi|171057563|ref|YP_001789912.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775008|gb|ACB33147.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 254 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 10/184 (5%) Query: 58 DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D D +L + P ++ V+ + + V L + Sbjct: 35 DARWCRRYLAAGCQNHDPWLVYATHHSEPTAASALD---VVATEHRQVVALIHEGGFVST 91 Query: 118 IAFPVRLGFHKN-------GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + P G + G + I A ++ + ++ Sbjct: 92 LLVPAHSGLSQARTSLLCLGSETVDHFERRDSAGHRILARALAAELHEWWSARIRRELVE 151 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT E S ++ G++S+ IA +L +S ++++ KL +NR QA + Sbjct: 152 AAQLTPTELSLVRHQCAGHSSKRIASELHVSPASIDSRFQRLHAKLGVLNRRQAARLLVD 211 Query: 231 FGYI 234 G I Sbjct: 212 CGLI 215 >gi|167821522|ref|ZP_02453202.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] Length = 74 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ + LT +E L+L G +++EIA + + TV +L + KLDA +R A+ Sbjct: 2 PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 61 Query: 226 AKAIRFGYI 234 +A+ G + Sbjct: 62 RRALVLGLL 70 >gi|152981499|ref|YP_001354599.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281576|gb|ABR89986.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 248 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L G +S+EIA+ L LSV TV + + KL N ++ A+ G + Sbjct: 189 TPREQQILKLVAAGKSSQEIADTLELSVFTVRKHKQNLMAKLSLHNAVELTRYAMHQGLL 248 >gi|108798589|ref|YP_638786.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867689|ref|YP_937641.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108769008|gb|ABG07730.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693778|gb|ABL90851.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 163 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFK-KRSSAARNLT 175 L G+V+ S L V A +V+ + R+ + +LT Sbjct: 42 LRAGVAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTARVLNTYRRAPDMPRALTSVDLT 101 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G GY++ EIA +L +S TV +++G +KL+ +R AI + G + Sbjct: 102 TRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIV 160 >gi|120404927|ref|YP_954756.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] gi|119957745|gb|ABM14750.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] Length = 399 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 5/142 (3%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 V E G + ++ V A + +A Sbjct: 250 RRVDEIDRDTVWAFAEGFGYAYERTVLLERMRRQHAEVRRALASADEAARALQDADLDLR 309 Query: 155 QV-----ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ L + + LT RE L+L G T+++IA++L +S TV +++ Sbjct: 310 KIEPVERSAAAQSLAEVHTRVLGMLTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHV 369 Query: 210 GSATVKLDAVNRIQAIAKAIRF 231 KL A NR +A + +R Sbjct: 370 KRVLRKLHATNRAEAASAYVRL 391 >gi|50119655|ref|YP_048822.1| virulence regulator [Pectobacterium atrosepticum SCRI1043] gi|49610181|emb|CAG73623.1| virulence regulator [Pectobacterium atrosepticum SCRI1043] Length = 116 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L ER+ LQL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 55 KLRERQHEVLQLIVSGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 108 >gi|150018604|ref|YP_001310858.1| two component LuxR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905069|gb|ABR35902.1| two component transcriptional regulator, LuxR family [Clostridium beijerinckii NCIMB 8052] Length = 220 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 31/56 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +NLTERE QL DGYT+ +IAE L +S TV Y+ + K + +R K Sbjct: 159 KNLTEREIEICQLLSDGYTNSQIAEFLYISEGTVKNYISTIYDKTEIKDRTMLALK 214 >gi|300781785|ref|ZP_07091639.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533492|gb|EFK54553.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 199 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 6/166 (3%) Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 GD + + + E + +L+ L G + R G+ + Sbjct: 36 GDGVVDAVREHN--VDVALLDIEMPGRTGLELAADLAGSPCKVVIVTTFGRPGYLRTALE 93 Query: 133 IFTSEFL--MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDG 188 + F+ + + +A + + D + + LT RE + A G Sbjct: 94 AGAAGFIVKDTPPDQLADAVRRAHAGMRVVDPQVAEESLFTPPSPLTAREVEVAREALTG 153 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++IA +L LS TV ++ + K A NR A G++ Sbjct: 154 AEIKQIAARLNLSTGTVRNHISAIMTKTGAPNRYAAARTCNDNGWL 199 >gi|315500413|ref|YP_004089216.1| regulatory protein luxr [Asticcacaulis excentricus CB 48] gi|315418425|gb|ADU15065.1| regulatory protein LuxR [Asticcacaulis excentricus CB 48] Length = 246 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 3/217 (1%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 P + +++ + +FA+ + + + + + + + D Sbjct: 32 HPLMEILRQIVPFDSFAMSGLAFFG--LGVGRGVMLASDMPEEFIRLFLTEKLYHQDPMS 89 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + + W + + + + +LE A A G + G V F Sbjct: 90 YLMTAERHWGSWHDLGPDVLTGPGVERIRQLERRFDITARSAVGFFNGEQRFGGVTFCRS 149 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +E V + + + + L++ E +CL+ DG I + Sbjct: 150 TPFSDHEK-FILEMTTRVVHAELSDQLLRAMNQHLGLSDGELACLKHFADGLEVPAIHQV 208 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + T+ Y SA K+ R A+A+A+R I Sbjct: 209 TGYTTDTIYTYAKSAAKKMGVRGRTHAVAEALRRKVI 245 >gi|254524756|ref|ZP_05136811.1| two-component system response regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219722347|gb|EED40872.1| two-component system response regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 200 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 E + +A Q I +L S A LT+RE L+LAG+G T+ EIAE+L Sbjct: 105 DAPAENLADALRKVNQGIRAIDPQLALDAWSQADPLTDRERRVLRLAGEGRTASEIAEQL 164 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GLS TV YL KL NRI+A A + G++ Sbjct: 165 GLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|108801090|ref|YP_641287.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|108771509|gb|ABG10231.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] Length = 220 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L +RS L+ +E L L G+G T+++IA ++ L+ TV Sbjct: 127 RSLLDNRAAAALMSKLRGDVERSDPLSGLSAQERVLLDLLGEGLTNKQIAARMFLAEKTV 186 Query: 206 NAYLGSATVKLDAVNRIQAIAK 227 Y+ KL R QA Sbjct: 187 KNYVSRLLAKLGMERRTQAAVF 208 >gi|33863139|ref|NP_894699.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9313] gi|33635056|emb|CAE21042.1| product possible regulatory protein, luxR family [Prochlorococcus marinus str. MIT 9313] Length = 74 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT RE L+L DG+T+ EI ++ ++ T ++ S KL NR A A+ IR Sbjct: 11 KSLTPRERFVLRLVCDGFTNREIGHQMFIAETTARGHVNSILRKLGVRNRAAAAAEGIRR 70 Query: 232 GYI 234 ++ Sbjct: 71 QWV 73 >gi|289705339|ref|ZP_06501735.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557854|gb|EFD51149.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 221 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + V + A + + LTERE ++ G ++ EIA Sbjct: 122 DAVFSAPVAADLVEAVTAAPEHAAPCPAEPLAPHERLTERELDVVRELAKGASNAEIAGA 181 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L+ TV +++G K +R+Q + +A R G + Sbjct: 182 LFLAEATVKSHIGKVLDKWQVRDRVQILIRAARAGLV 218 >gi|260466579|ref|ZP_05812767.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029585|gb|EEW30873.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 525 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A V++ + ++ +T RE L+L G T++E A KL +S T + ++ Sbjct: 435 AAEAVLSFAGQPSRRTPPRPLAGMTPREIEVLRLIAAGLTAKEAARKLDISPKTADHHIQ 494 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S K+ R A A+ G + Sbjct: 495 SVYAKIGVTTRAAAALYAVEHGLV 518 >gi|291298491|ref|YP_003509769.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567711|gb|ADD40676.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%) Query: 135 TSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + L+ + + HG I + + R++ NL+ERE L G ++ E Sbjct: 33 SRRLEPLSIDGRMLLHGLAALGIDLEPPKPTPLRANLQHNLSEREHQVLLGIAGGKSNAE 92 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I +L ++ T+ + A KL A +R A+A A R + Sbjct: 93 IGRELYVTEDTIKTHARRAYRKLGARDRAHAVALAFRQNIL 133 >gi|256819971|ref|YP_003141250.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] gi|256581554|gb|ACU92689.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] Length = 218 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 1/151 (0%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + + + ++ EE + +R+ I L F + ++ Sbjct: 68 VVRRIDKKVWEFL-DTLPEEEKLTYKYIYEMRVLDRGKYVRMIYQMRILAFKDDNFLGMG 126 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 L +TD + F S+ LT RE L LA +G S+EI+ Sbjct: 127 IIDLAPEQSANTSVRFQIKNCLTDEIVPFAIESATNTLLTPREREILALAKEGMFSKEIS 186 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 EKL +SVHTVN + + KL N I+AI Sbjct: 187 EKLNISVHTVNRHRQNILEKLQVGNIIEAIR 217 >gi|77463889|ref|YP_353393.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|332558762|ref|ZP_08413084.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77388307|gb|ABA79492.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] gi|332276474|gb|EGJ21789.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 213 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + I + + + + + + +LTER+ + G +++ IA +L Sbjct: 112 RLATFDGIFLPTASLTALRGALPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGEL 171 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L TV ++ + KL A NR +A K Sbjct: 172 NLCESTVKVHIRNIMKKLGAKNRTEAAFK 200 >gi|91976037|ref|YP_568696.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91682493|gb|ABE38795.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 221 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 152 ACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 QVI+ + ++R++ A L+ RE ++L G T++EIA + +S TV Y+ Sbjct: 130 FATQVISALRDATIRRRAAMAVKLSIREEQIVRLLLKGKTNKEIAHAISISEKTVKHYMT 189 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 KL NR++ + A R Sbjct: 190 ILMQKLQVRNRLEVVIAAQRL 210 >gi|303234262|ref|ZP_07320907.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|302494626|gb|EFL54387.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 208 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + LT RE L+L G +++IAE+LG+ ++TV ++ K + +R Q + Sbjct: 138 MAKSTELTPREIEVLRLLTTGAGNDQIAEELGILLNTVKTHIQHMLDKTEFTSRTQLAIQ 197 Query: 228 AIRFGYI 234 A G++ Sbjct: 198 ARITGFV 204 >gi|167618566|ref|ZP_02387197.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] Length = 279 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ E + L G L P L V+ Sbjct: 63 LHALCQACAPTPVAALTDDASPEHAQALFN--AGVLGVIPRSTRP-HLIVRALEMVLLGG 119 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 120 HYVPPSALNLTEPITRARDGRVDAIVSQLPRRKRSPRSLLSPRQAQIMRFVHMGSTNKMI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217 >gi|226227636|ref|YP_002761742.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090827|dbj|BAH39272.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 223 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 5/118 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAARNLTE 176 +R+G H E L A + + L + ++ LT Sbjct: 103 MRIGTHGYLLKDSAGEELRAAIRAVHAGGTFFSPAVVRRLTSTEVVSEGAPAAQLDLLTP 162 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G T++ IA +LG+S TV A+ S KL + A+ G I Sbjct: 163 RERDVLAGVARGLTNKAIAAELGISRRTVEAHRESLMRKLQIHSVAGLTRFALETGII 220 >gi|253991254|ref|YP_003042610.1| two-component response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638302|emb|CAR66925.1| putative two-component response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782704|emb|CAQ85869.1| putative two-component response regulator [Photorhabdus asymbiotica] Length = 211 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + + + LT RE LQL +G + IAE L +SV TV + + KL Sbjct: 134 EAVHRLGEGTNDDSTLLTRRERQILQLISEGNGNRNIAEMLSISVKTVETHRLNMMRKLK 193 Query: 218 AVNRIQAIAKAIRFGYI 234 + + + + G I Sbjct: 194 VHKVTELLKYSRKLGLI 210 >gi|162146990|ref|YP_001601451.1| two-component system regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544054|ref|YP_002276283.1| two component LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785567|emb|CAP55138.1| putative two-component system regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531731|gb|ACI51668.1| two component transcriptional regulator, LuxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 201 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 6/148 (4%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 E S ++ + LP I L + +E A Sbjct: 54 DIEMPGPSGIDVARDIAAASLPTRTIIVTTFARPGYLARARTAGVRGYLLKDAPVEQLAA 113 Query: 153 CYQVITDFLEL------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + + A LT RE L+LA +G ++++IA +LGLS TV Sbjct: 114 AIRTVATGGTFIPPDLMAAAWDAGADPLTARERDALRLAEEGLSNKDIARRLGLSPGTVR 173 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 YL +A KL+A NRI+A A G++ Sbjct: 174 NYLSTAAGKLNAANRIEAGRIARANGWL 201 >gi|119493450|ref|ZP_01624119.1| NarL subfamily protein [Lyngbya sp. PCC 8106] gi|119452694|gb|EAW33873.1| NarL subfamily protein [Lyngbya sp. PCC 8106] Length = 215 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT E +QL G + E+A+ + +S T+ +++ + K NR + Sbjct: 149 ARPGVELTPTEVRVVQLVAQGLANREVAKAMKVSQRTIESHVSNMLNKTGLHNRTELARW 208 Query: 228 AIR 230 A+ Sbjct: 209 ALE 211 >gi|87119848|ref|ZP_01075744.1| two-component system regulatory protein [Marinomonas sp. MED121] gi|86164550|gb|EAQ65819.1| two-component system regulatory protein [Marinomonas sp. MED121] Length = 209 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ E L+L GY++ EI+E + S T+ + KL +R +A+ KAI Sbjct: 147 DGLSSNEIQVLRLIAAGYSNNEISEIMFKSAGTIRNKVSFILAKLQVRDRTRAVIKAIEL 206 Query: 232 GYI 234 G I Sbjct: 207 GVI 209 >gi|300727173|ref|ZP_07060591.1| transcriptional regulator, LuxR family domain protein [Prevotella bryantii B14] gi|299775559|gb|EFI72151.1| transcriptional regulator, LuxR family domain protein [Prevotella bryantii B14] Length = 199 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G+ ++EIAEKL + + TV + + KL + A+ GY Sbjct: 134 LSDREIEVLSLVAQGHINKEIAEKLNIGLTTVITHRKNIQEKLGMKSVSALTIYAVMHGY 193 Query: 234 I 234 + Sbjct: 194 V 194 >gi|258650587|ref|YP_003199743.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553812|gb|ACV76754.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 938 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Query: 138 FLMLANEVIIEAHGACYQ-VITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEI 194 LA + E L + RS AA LT+RE L G G T+++I Sbjct: 840 GGDLAGTALAEFERLAMPGPAAAARRLLEHRSPAAHGDGLTDREAEVAGLVGQGLTNKQI 899 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +L LSV TV +++ +A KL +R + R Sbjct: 900 AAQLFLSVRTVESHVRNALAKLQLTSRTELALWVHR 935 >gi|126462723|ref|YP_001043837.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|126104387|gb|ABN77065.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] Length = 247 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + I + + + + + + +LTER+ + G +++ IA +L Sbjct: 146 RLATFDGIFLPTASLTALRGALPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGEL 205 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L TV ++ + KL A NR +A K Sbjct: 206 NLCESTVKVHIRNIMKKLGAKNRTEAAFK 234 >gi|300857851|ref|YP_003782834.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685305|gb|ADK28227.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205581|gb|ADL09923.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330135|gb|ADL20329.1| Two component LuxR family transcriptional [Corynebacterium pseudotuberculosis 1002] gi|308275816|gb|ADO25715.1| Two component LuxR family transcriptional [Corynebacterium pseudotuberculosis I19] Length = 225 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L GYT +EI +L +SV TV + + K NR A Sbjct: 160 PIVDALTRRELEVLRLLARGYTYKEIGAQLFISVKTVETHASNILRKTQQSNRHALTRWA 219 Query: 229 IRFGY 233 Sbjct: 220 HSRDL 224 >gi|134096209|ref|YP_001101284.1| response regulatory protein [Herminiimonas arsenicoxydans] gi|133740112|emb|CAL63163.1| Response regulatory protein [Herminiimonas arsenicoxydans] Length = 238 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L L G + E+A +L LSV TV ++ + KL +R A+ +A R G Sbjct: 169 LTRREATILDLIARGDSYCEVARELALSVGTVQTHIKNIYDKLSVHSRGAAVYEAHRRGL 228 Query: 234 I 234 + Sbjct: 229 L 229 >gi|75674440|ref|YP_316861.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419310|gb|ABA03509.1| two component transcriptional regulator, LuxR family [Nitrobacter winogradskyi Nb-255] Length = 216 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 107 RLEGGLLPFAGIA-FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 R+ +L +G A + + K G + F +++VIIE A +V + + Sbjct: 80 RVAAPILVISGAADISMAVAAMKYGALDF--LEKPFSSDVIIERVRAAVKVWREARGSER 137 Query: 166 K---RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE L G +++E +LG+S TV + KL A N Sbjct: 138 DGFANFPGRHLLTCREREVLSQVARGASNKEAGRRLGISPRTVEVHRARIMDKLGAKNTA 197 Query: 223 QAIAKAIRFG 232 I G Sbjct: 198 DLIRIVFSEG 207 >gi|182412194|ref|YP_001817260.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839408|gb|ACB73660.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 214 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARN---LTERE 178 L GYV T+ F + + E + + + ++ RE Sbjct: 89 LSAGARGYVEKTASFSEFTAALNAVAEGQTYIGPAVARAVRRMAGHPERIDSKLDISTRE 148 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G +S+EIA++LGLSV TV + S T + + Q A R G + Sbjct: 149 RDVLRFVAEGLSSKEIAQRLGLSVRTVENHRASITRRTGLRSVAQLTLHAARLGLV 204 >gi|261820885|ref|YP_003258991.1| response regulator [Pectobacterium wasabiae WPP163] gi|2661730|emb|CAA64809.1| expA [Pectobacterium carotovorum] gi|261604898|gb|ACX87384.1| two component transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 218 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+++L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQTDAPLECLSERELQIMLMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AI+ G Sbjct: 193 INGDVELTHLAIKHGL 208 >gi|326389101|ref|ZP_08210683.1| LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206701|gb|EGD57536.1| LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 196 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + L +R+ L+ G +++IA +L +S TV + + Sbjct: 119 LHDQNRKRSESAREKVEALPKRQREILECIAAGKLNKQIAWELQISERTVKLHRAAVLKA 178 Query: 216 LDAVNRIQAIAKAIRFGY 233 L AI AI G Sbjct: 179 LGVKTSADAIRMAIEAGL 196 >gi|294651876|ref|ZP_06729166.1| LuxR family DNA-binding response regulator [Acinetobacter haemolyticus ATCC 19194] gi|292822199|gb|EFF81112.1| LuxR family DNA-binding response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 217 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + ++LT ++ L + +G +++IA +L +S T+ A++ + Sbjct: 132 HASFDPRAADETALAERLQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIF 191 Query: 214 VKLDAVNRIQAI 225 KL NR QA+ Sbjct: 192 RKLGVQNRTQAV 203 >gi|255320308|ref|ZP_05361493.1| two component transcriptional regulator, LuxR family [Acinetobacter radioresistens SK82] gi|262380505|ref|ZP_06073659.1| response regulator [Acinetobacter radioresistens SH164] gi|255302747|gb|EET81979.1| two component transcriptional regulator, LuxR family [Acinetobacter radioresistens SK82] gi|262297951|gb|EEY85866.1| response regulator [Acinetobacter radioresistens SH164] Length = 216 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + ++LT ++ L + +G +++IA +L +S T+ A++ + KL NR Q Sbjct: 142 ETELAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQ 201 Query: 224 AIAKAIRF 231 A+ AI+ Sbjct: 202 AV-LAIKA 208 >gi|194291803|ref|YP_002007710.1| response regulator, luxr family [Cupriavidus taiwanensis LMG 19424] gi|193225707|emb|CAQ71653.1| putative Response regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 220 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 109 EGGLLPFAGIA----FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 +L +G + P + G++ +++ + + + G Y Sbjct: 87 RARILIVSGTSGLEIIPAEVRREIAGFLPKSADAHEIEDAIACCLAGGTYFSGEANAVAA 146 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + AA LT R+ L G +++ IA +GLS +TV ++ + L V+R++A Sbjct: 147 PQAPYAASTLTPRQLEVLHQLTLGRSNKVIAYHMGLSENTVRVHVAAILDHLGVVSRVEA 206 Query: 225 IAKAIRFGYI 234 I +A R G + Sbjct: 207 ILEAQRRGLV 216 >gi|197123248|ref|YP_002135199.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220918037|ref|YP_002493341.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196173097|gb|ACG74070.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219955891|gb|ACL66275.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 215 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V+ +R+ L++RE LQL G+T ++A LG++ TV Y+ Sbjct: 129 RAAKVLLQEFRGDPPDQRAKDGPALSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYV 188 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 K+D + +A A+ G + Sbjct: 189 KRIYEKMDVSTKAEAALLAVARGLV 213 >gi|134100725|ref|YP_001106386.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133913348|emb|CAM03461.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 202 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 11/154 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML-----ANEVI 146 + + ++ L + F + L A +++ Sbjct: 49 LDLRLPDAMASEIVAPLREAAPAARILVFTAYRDHAALQATLDAGVDGCLLKDAGATDLV 108 Query: 147 IEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGL 200 H A + + + ++ + R+ LT+RE L+ A G T+ EIA++LGL Sbjct: 109 SAVHQAAHGIPIFDPRVGERAAPRMRSRLHDTGLTQREYDVLRHAAAGRTNPEIADQLGL 168 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + HTV YL +A KL+A NRI+ IAKA + G + Sbjct: 169 TRHTVTGYLRNAMRKLNARNRIELIAKAAQSGLL 202 >gi|74317417|ref|YP_315157.1| transcriptional regulator NarL [Thiobacillus denitrificans ATCC 25259] gi|74056912|gb|AAZ97352.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 219 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 16/155 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + + ++ ++ L I V + + E ++ Sbjct: 58 LDLNMKDMNGVEVLKAIKDEGLDSRVIMLTVSDQAEDLIAALQAGADGYLLKDMEPEDLM 117 Query: 148 EAHGACY-----------QVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIA 195 + Q++ L + +S A LTE+E L DG +++ IA Sbjct: 118 QQLAEAARGKITISEGLTQLLVSSLREKTRPTSLADAGLTEQENRILDHLVDGKSNKLIA 177 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +G++ TV ++ KL+ +R++A A R Sbjct: 178 RDMGIAEGTVKVHVKHLLKKLNLRSRVEAAVWADR 212 >gi|323128869|gb|ADX16299.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 270 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I A Sbjct: 209 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 268 Query: 233 YI 234 + Sbjct: 269 LL 270 >gi|313204967|ref|YP_004043624.1| transcriptional regulator [Paludibacter propionicigenes WB4] gi|312444283|gb|ADQ80639.1| transcriptional regulator [Paludibacter propionicigenes WB4] Length = 217 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E L+ G T++EIA K +SVHT+ + + K++ N +A A+R G Sbjct: 150 LTATEQEILKEMALGKTTKEIASKRHVSVHTIMTHRKNIFRKIEVNNVHEATKYAMRAGI 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|298245015|ref|ZP_06968821.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552496|gb|EFH86361.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 931 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L G T+++IA +L +S+ T ++ S KL A NR+QA+A+A + Sbjct: 872 TRREEEVLRLLAQGATNQDIARQLVVSLGTAKKHVASILSKLGAENRLQAVARAHERSLL 931 >gi|296105249|ref|YP_003615395.1| hypothetical protein ECL_04922 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059708|gb|ADF64446.1| hypothetical protein ECL_04922 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 196 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 14/106 (13%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 P + V+ + M+ A A +Q + +L+ER+ Sbjct: 97 IPRNASPERFAAVLDSVSRGMVCFPGEWLAQQASHQALL--------------SLSERQR 142 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+L G +++EI L +S TV A+L S +LD NR QA Sbjct: 143 EVLKLLAAGESNKEIGRTLNISAATVKAHLESLFRRLDVKNRTQAA 188 >gi|302550551|ref|ZP_07302893.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468169|gb|EFL31262.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN----LTE 176 L G+++ S+ L V + A + + A LT Sbjct: 100 LRVGAAGFLLKRSDADALVQAVRLVARSDSLLFPAAVRTLATAHARAHPAPPAWVAKLTG 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ DG T+ EIA ++ + TV +++ + K +R QA+ A G++ Sbjct: 160 REREVLRRMADGLTNAEIARRMEVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGFL 217 >gi|254788344|ref|YP_003075773.1| regulator in two-component regulatory system [Teredinibacter turnerae T7901] gi|237686243|gb|ACR13507.1| regulator in two-component regulatory system [Teredinibacter turnerae T7901] Length = 208 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 34/64 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + ++ LT ++ L L +G+ +++I ++G++ TV A++ + KL NR Q Sbjct: 141 ERDLAAKIATLTPQQYRVLCLLREGWLNKQIGFEMGVTEATVKAHITAIFRKLGISNRTQ 200 Query: 224 AIAK 227 A+ Sbjct: 201 AVIM 204 >gi|238799115|ref|ZP_04642570.1| Response regulator uvrY [Yersinia mollaretii ATCC 43969] gi|238717023|gb|EEQ08884.1| Response regulator uvrY [Yersinia mollaretii ATCC 43969] Length = 206 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 3/112 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181 G + ++ A + I + L + A L+ERE Sbjct: 85 GAGGYLSKGAAPQDVVAAIRAVHSGQRYIASDIAQQMALSQLEPPAETPFSCLSERELQI 144 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + G EI+E+L LS TVN+Y KL+ ++ AIR G Sbjct: 145 MLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 196 >gi|158422196|ref|YP_001523488.1| regulatory protein [Azorhizobium caulinodans ORS 571] gi|158329085|dbj|BAF86570.1| regulatory protein [Azorhizobium caulinodans ORS 571] Length = 223 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S LT ++ L + +G +++IA +LG+S TV A++ + KL +R Q Sbjct: 146 ADAIISRLATLTPQQVRVLMMLAEGRLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQ 205 Query: 224 AIA 226 A+ Sbjct: 206 AVI 208 >gi|62391250|ref|YP_226652.1| LuxR family regulatory protein [Corynebacterium glutamicum ATCC 13032] gi|21325179|dbj|BAB99801.1| DNA-binding HTH domains [Corynebacterium glutamicum ATCC 13032] gi|41326590|emb|CAF21072.1| Bacterial regulatory protein, LuxR family [Corynebacterium glutamicum ATCC 13032] Length = 895 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---------RSSAARNLTERETSC 181 + + + A + L + RS A LT +E Sbjct: 782 ALRRQGQRRRADEQFARAASLFQDMGADAMVTLANRERRVGGLGQRSEQAGGLTPQEYEI 841 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L G+ + E+A++L LS TV +L KL NR++ Sbjct: 842 ARLVSSGHANREVAQELFLSPKTVEYHLTRVYKKLGIRNRMELA 885 >gi|294102876|ref|YP_003554734.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293617856|gb|ADE58010.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 229 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G+ ++EIA +L +S TV + KL + + A R Sbjct: 152 ELLTPREKEILLLLAQGFATKEIASQLSISRKTVETHKARTMEKLGLYSVAELARFAERE 211 Query: 232 G 232 G Sbjct: 212 G 212 >gi|253572201|ref|ZP_04849605.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6] gi|251838381|gb|EES66468.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6] Length = 200 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L G ++EIA+KL +S+ TV + + T KL + A+ Sbjct: 133 EILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMN 192 Query: 232 GYI 234 GYI Sbjct: 193 GYI 195 >gi|229822479|ref|YP_002884005.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568392|gb|ACQ82243.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 222 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + ++ +T+RE L G +++EIA +L LS T Y+ KLDA +R Sbjct: 146 VDADATARLDRITDREREVLAAVARGLSNDEIAGELFLSPATARTYVSRLLTKLDARDRA 205 Query: 223 QAIAKAIRFGYI 234 Q + A G + Sbjct: 206 QLVVLAYEAGLV 217 >gi|182433997|ref|YP_001821716.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462513|dbj|BAG17033.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G L + R A LT RE L Sbjct: 105 AGAIGYLLKDATRDQLVEAVHSAARGETVLAPRVAARLVARMRRPAPVTLTPREVDVLGA 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ EI +L ++ TV +L KLD +R A+ +A+ + Sbjct: 165 VADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214 >gi|126434190|ref|YP_001069881.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126233990|gb|ABN97390.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 162 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFK-KRSSAARNLT 175 L G+V+ S L V A +V+ + R+ + +LT Sbjct: 41 LRAGVAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTARVLNTYRRAPDMPRALTSVDLT 100 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G GY++ EIA +L +S TV +++G +KL+ +R AI + G + Sbjct: 101 TRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIV 159 >gi|153005603|ref|YP_001379928.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029176|gb|ABS26944.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 215 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 2/108 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAG 186 T + + +V+ L A L++RE LQL Sbjct: 106 FHAAELTRAVEDVLSGDAAPISPRAAKVLLSELRGDPPDQKAKDGPALSKRELEVLQLLV 165 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T ++A+ LG++ TV Y+ K+D + +A A+ G + Sbjct: 166 HGHTYADVAQALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGLV 213 >gi|104781955|ref|YP_608453.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110942|emb|CAK15660.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 263 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 17/182 (9%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 ++ + + D F + + + + + ++ + + Sbjct: 68 PEAMALYLSGLYQL-DPFYQACQEHIGDGLHRLEEVAPDQFRQSEYYLKYFHDHVLEDEV 126 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKRSSAARN--- 173 F ++LG + + ++ ++ + +R + A Sbjct: 127 QFILQLGEAGALSLSLGTRERFDTARHGLLTVICPWVLALMGQHWQSQAQRPAPAMASQV 186 Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L+ERE +L GY+S+ +AE+L +S TV + KLD ++ Sbjct: 187 RDAMSLFGAKVLSERELEIARLILRGYSSKAMAERLAISPETVKVHRRHLYAKLDISSQP 246 Query: 223 QA 224 + Sbjct: 247 EL 248 >gi|29347818|ref|NP_811321.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298387982|ref|ZP_06997530.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. 1_1_14] gi|29339719|gb|AAO77515.1| luxR family transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298259248|gb|EFI02124.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. 1_1_14] Length = 200 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L G ++EIA+KL +S+ TV + + T KL + A+ Sbjct: 133 EILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMN 192 Query: 232 GYI 234 GYI Sbjct: 193 GYI 195 >gi|329934840|ref|ZP_08284881.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305662|gb|EGG49518.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 209 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 1/113 (0%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +R + + + A QV+ L + + LT RE Sbjct: 98 LRRAMEAGAAGFLVKDGPVEELAAAVRRVLAGEQVVDPALAMAALSAGP-NPLTPRECDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ A DG T +IA +L LS TV YL S K NR +A+ +A G++ Sbjct: 157 LRSAADGATVADIAAELHLSESTVRNYLSSVIGKTGTRNRTEALREARHHGWL 209 >gi|300859067|ref|YP_003784050.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686521|gb|ADK29443.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302331322|gb|ADL21516.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis 1002] Length = 208 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L G T++EIA +L +S+ TV ++ +LD NR++ A R G Sbjct: 145 PLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRVEIAAALWRSG 204 >gi|145296375|ref|YP_001139196.1| hypothetical protein cgR_2289 [Corynebacterium glutamicum R] gi|140846295|dbj|BAF55294.1| hypothetical protein [Corynebacterium glutamicum R] Length = 895 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---------RSSAARNLTERETSC 181 + + + A + L + RS A LT +E Sbjct: 782 ALRRQGQRRRADEQFARAASLFQDMGADAMVTLANRERRVGGLGQRSEQAGGLTPQEYEI 841 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L G+ + E+A++L LS TV +L KL NR++ Sbjct: 842 ARLVSSGHANREVAQELFLSPKTVEYHLTRVYKKLGIRNRMELA 885 >gi|124383175|ref|YP_001025881.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|254194028|ref|ZP_04900460.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200975|ref|ZP_04907340.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254359059|ref|ZP_04975331.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|147748587|gb|EDK55662.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|148028246|gb|EDK86206.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|169650779|gb|EDS83472.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|261827167|gb|ABM99233.2| DNA-binding response regulator [Burkholderia mallei NCTC 10229] Length = 264 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 191 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHW 250 Query: 228 AIRFGY 233 A R+GY Sbjct: 251 AYRYGY 256 >gi|22127903|ref|NP_671326.1| two-component system response regulator [Yersinia pestis KIM 10] gi|21961040|gb|AAM87577.1|AE014004_15 response regulator [Yersinia pestis KIM 10] Length = 220 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT RE L +G EIAE LGLS TV+ + + KL N ++ K Sbjct: 159 AVDPLTRREREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 216 >gi|126453676|ref|YP_001065612.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134283901|ref|ZP_01770597.1| putative DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167718883|ref|ZP_02402119.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167737890|ref|ZP_02410664.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167815073|ref|ZP_02446753.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167823489|ref|ZP_02454960.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167845041|ref|ZP_02470549.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167893583|ref|ZP_02480985.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167910266|ref|ZP_02497357.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|217419942|ref|ZP_03451448.1| putative DNA-binding response regulator [Burkholderia pseudomallei 576] gi|242316523|ref|ZP_04815539.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254181152|ref|ZP_04887749.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254190516|ref|ZP_04897023.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254195131|ref|ZP_04901560.1| putative DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254257993|ref|ZP_04949047.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|126227318|gb|ABN90858.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134244690|gb|EBA44788.1| putative DNA-binding response regulator [Burkholderia pseudomallei 305] gi|157938191|gb|EDO93861.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|169651879|gb|EDS84572.1| putative DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184211690|gb|EDU08733.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217397246|gb|EEC37262.1| putative DNA-binding response regulator [Burkholderia pseudomallei 576] gi|242139762|gb|EES26164.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254216682|gb|EET06066.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 279 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ + L G L + P L V+ Sbjct: 63 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 119 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 120 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217 >gi|326622251|gb|EGE28596.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 270 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I A Sbjct: 209 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 268 Query: 233 YI 234 + Sbjct: 269 LL 270 >gi|304383484|ref|ZP_07365946.1| transcriptional regulator [Prevotella marshii DSM 16973] gi|304335403|gb|EFM01671.1| transcriptional regulator [Prevotella marshii DSM 16973] Length = 212 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 2/116 (1%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTERE 178 V + G V+ S + ++ Q + + L + LT+ E Sbjct: 90 SVITSGNHFGIVMKDSSLPEIREALLFALRGQRYICQRMAELLLTPVPSACGKDLLTKTE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L+ G T+ EIA+K S HTVN + + K+ +A A+R G I Sbjct: 150 TEILKDIALGMTTREIADKRYSSFHTVNTHRKNIFRKIAVNTAYEATKYALRAGLI 205 >gi|298373031|ref|ZP_06983021.1| transcriptional regulator, LuxR family [Bacteroidetes oral taxon 274 str. F0058] gi|298275935|gb|EFI17486.1| transcriptional regulator, LuxR family [Bacteroidetes oral taxon 274 str. F0058] Length = 188 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + SS LT RE L +G T++EIA+ L LSVHT+ + + + KL Sbjct: 118 QSSSPEEALTIREQEVLVRIVNGLTNKEIADNLNLSVHTITTHRRNISTKLQIHTVAGLT 177 Query: 226 AKAIRFGYI 234 AI I Sbjct: 178 IYAISNKMI 186 >gi|212640627|ref|YP_002317147.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562107|gb|ACJ35162.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 206 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+ E L+L T+E I+ L +S TV ++ + KL +R+ A+ KAI+ G Sbjct: 143 SLTKMELVILKLIAQDKTNENISHSLNISRRTVEHHVSTIIKKLRVDSRVGAVVKAIKEG 202 Query: 233 YI 234 I Sbjct: 203 II 204 >gi|154494182|ref|ZP_02033502.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC 43184] gi|154086044|gb|EDN85089.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC 43184] Length = 192 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 4/133 (3%) Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161 L V LP + G + TS + A++ +I + Sbjct: 57 AALFVLYADFFLPRRSKTMVLIDETEGEGGLSATSHITIKASQEVIIEQLE-QLFTGENN 115 Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + + L+ RET LQL G T++EIA+KL +S++TV ++ + T KL Sbjct: 116 SISSDNN---KELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTV 172 Query: 222 IQAIAKAIRFGYI 234 AI G I Sbjct: 173 SGLTFYAIMNGII 185 >gi|159037922|ref|YP_001537175.1| ATP-dependent transcription regulator LuxR [Salinispora arenicola CNS-205] gi|157916757|gb|ABV98184.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Salinispora arenicola CNS-205] Length = 981 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 35/88 (39%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + A V + K+ S +LTE E +L +G T+++ A+ L Sbjct: 883 AEREAARVRAQLRGLGVWRRHWKQAKRPLSGWESLTETERKVAKLVANGLTNQQAADHLF 942 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S HTV +L KL +R I Sbjct: 943 ISPHTVGFHLRQIYRKLGIRSRSALIRY 970 >gi|297539450|ref|YP_003675219.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297258797|gb|ADI30642.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 275 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S L++RE+ + G T+ EI L +S TV +L KLD +NR Q Sbjct: 205 NESESEFIDILSDRESEIMLWVKMGKTNHEIGMILNISAFTVKKHLQRIFKKLDVLNRAQ 264 Query: 224 AIAK 227 A K Sbjct: 265 AATK 268 >gi|227112458|ref|ZP_03826114.1| response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227329599|ref|ZP_03833623.1| response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253689045|ref|YP_003018235.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755623|gb|ACT13699.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|301069190|dbj|BAJ11974.1| response regulator ExpA [Pectobacterium carotovorum subsp. carotovorum] Length = 218 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+++L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQTDAPLECLSERELQIMLMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AI+ G Sbjct: 193 INGDVELTHLAIKHGL 208 >gi|209966948|ref|YP_002299863.1| transcriptional regulator, LuxR family protein [Rhodospirillum centenum SW] gi|209960414|gb|ACJ01051.1| transcriptional regulator, LuxR family protein [Rhodospirillum centenum SW] Length = 907 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 34/94 (36%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L I + + A L+ RE + + G +++EIA Sbjct: 810 RDCLRRSREIGLDSLARAFAEELERTLARPRDEADTLSPRERAVVIELCRGASNKEIARA 869 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L ++ +TV +L + KL R AI A R Sbjct: 870 LAMTENTVKFHLKNIFGKLGVDRRAAAIITARRL 903 >gi|167587172|ref|ZP_02379560.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Burkholderia ubonensis Bu] Length = 83 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 37/74 (50%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 R+ + LT +E + L+L +++EIA L + TV +L + KLDA + Sbjct: 6 RSAAGPRAVPSVVLTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASS 65 Query: 221 RIQAIAKAIRFGYI 234 R A+ +A+ G + Sbjct: 66 RKHAVRRALVLGLL 79 >gi|167566149|ref|ZP_02359065.1| two component transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167575074|ref|ZP_02367948.1| two component transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 215 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 3/119 (2%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL---FKKRSSAARNLT 175 R G ++ L+ A + + + L L + R+ + L+ Sbjct: 91 VQACRAGASGFVTKSDSNSELIAAIRKVALGGVYVSAAVAERLALSVHEQDRALPHQRLS 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + G +IA L +S TV+ Y K+ + + AIR I Sbjct: 151 GREFDVMCRLASGQPVRDIARTLYVSAKTVSTYRTHICEKMGVPHDAALVRYAIRHKLI 209 >gi|17549798|ref|NP_523138.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17432053|emb|CAD18730.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 252 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 13/209 (6%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 ++ + R+ A +Y + + + Sbjct: 28 EFVRPVVGHRHLA--CGYGRTTSSGVAMDYVVTVDYPNEHLLAIRNTAGGIDTPIMRRWL 85 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 + P+ + E + + A + + G + Sbjct: 86 ATRRPVYF---DAAAPWEGTDPAWLEKFVKHGLRNCAADAMFDEVNCVGTYFSFHALPSV 142 Query: 142 A--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 ++ H A + + + +K S A L+ERE L G G ++ E Sbjct: 143 EQGCLDAMLRDLTPVLHSALLRAVANVESDLQKASEALATLSEREREVALLIGQGKSNAE 202 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 IA + S +TV YL S K NR+ Sbjct: 203 IALLVCKSENTVKHYLSSIMDKTGCENRV 231 >gi|326626887|gb|EGE33230.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 270 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I A Sbjct: 209 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 268 Query: 233 YI 234 + Sbjct: 269 LL 270 >gi|302879267|ref|YP_003847831.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302582056|gb|ADL56067.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 211 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S L++RE L+L G G T E+A+ L LSV TV+ Y K++ N + Sbjct: 139 SDSAKSPHETLSDREYQVLRLIGSGKTVSEVAKLLSLSVKTVSTYRSHILDKMNLRNNAE 198 Query: 224 AIAKAIRFGY 233 I+ G Sbjct: 199 LTLYVIQNGL 208 >gi|163752091|ref|ZP_02159298.1| transcriptional regulator, LuxR family protein [Shewanella benthica KT99] gi|161328037|gb|EDP99208.1| transcriptional regulator, LuxR family protein [Shewanella benthica KT99] Length = 210 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 31/58 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + NLT RE LQ G T+ IA +L +S T+ +L A K+ +R QAIA A Sbjct: 144 SDNLTIREREVLQALLSGSTNVNIASQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 201 >gi|149912597|ref|ZP_01901131.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149813003|gb|EDM72829.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 206 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR-NLT 175 L +G + + SE L +G + + KR A R LT Sbjct: 89 LDAGASGILTYNSEMSDLRVAARRVMNGDNYVQPDMAMDIFAKLRQAEAKRKEAERLRLT 148 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE+ ++ G T+ +I+ +L +S TV Y+GS K A NR++ + +A R G Sbjct: 149 ARESQVVRHLMQGMTNGQISVELNISEKTVKHYVGSLKDKFGAANRLEVVLEAQRLG 205 >gi|152984927|ref|YP_001347090.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960085|gb|ABR82110.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 827 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L L G +++EI E+L +S+HTV + KL R QA+A+A G Sbjct: 765 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 824 Query: 233 YI 234 + Sbjct: 825 LL 826 >gi|38233207|ref|NP_938974.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199466|emb|CAE49117.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 231 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 27/65 (41%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L GYT +EIA +L +SV TV + + K NR A Sbjct: 166 PIVDALTRRELEVLKLLARGYTYKEIAAELFISVKTVETHASNILRKTQQSNRHALSRWA 225 Query: 229 IRFGY 233 Sbjct: 226 QSHDL 230 >gi|269103638|ref|ZP_06156335.1| transcriptional regulator LuxR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268163536|gb|EEZ42032.1| transcriptional regulator LuxR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 209 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + EL +K + LT ++ L++ DG +++IA +L +S T+ A++ + K Sbjct: 136 ALDETDELVEKIA----TLTPQQLKVLKMLADGLLNKQIAYELDVSEATIKAHMTAIFRK 191 Query: 216 LDAVNRIQAIAK 227 L NR QA+ Sbjct: 192 LSVTNRTQAVIL 203 >gi|205372380|ref|ZP_03225194.1| response regulator receiver [Bacillus coahuilensis m4-4] Length = 210 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + ++ + G Q++ E + L+ERE LQ +G +++ Sbjct: 112 LAASIRLVHRGETLINQGLAKQLLASIPQENKEDSIYTKFGLSEREGQILQAIANGLSNK 171 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +I++KL L+ TV Y+ KLD +RI A Sbjct: 172 QISQKLFLTEGTVKNYVSKIYAKLDVQDRIGA 203 >gi|146339448|ref|YP_001204496.1| response regulator FixJ [Bradyrhizobium sp. ORS278] gi|146192254|emb|CAL76259.1| two component transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. ORS278] Length = 205 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 10/127 (7%) Query: 116 AGIAFPVRLGFHKNGYVIFT----------SEFLMLANEVIIEAHGACYQVITDFLELFK 165 +G V G + F +IE + + + Sbjct: 75 SGFPILVMTGHGDVPLAVEAMKLGAVDFLEKPFEDERLVAMIETAIKQAEPAAKNESVTQ 134 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +L+ RE + G +++ IA + +S T+ Y + K+ A + + + Sbjct: 135 DILARVASLSPRERQVMDGLMAGLSNKLIAREYDISPRTIEVYRANVMTKMGANSLSELV 194 Query: 226 AKAIRFG 232 A+R G Sbjct: 195 RLAMRAG 201 >gi|324997109|ref|ZP_08118221.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 126 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 30/62 (48%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ+ G T++EIA +L ++ TV A+L KL NR QA Sbjct: 51 PLGTLTGRELEVLQVLAAGATNKEIAARLFIAPKTVGAHLARIFAKLGVTNRTQAAGVLR 110 Query: 230 RF 231 R Sbjct: 111 RH 112 >gi|291298679|ref|YP_003509957.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567899|gb|ADD40864.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 386 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G ++ ++A+ LG+SV TV ++ + K +R +A A+ G Sbjct: 299 ELTAREKEVLSCLAAGMSNRQVAKSLGISVRTVTVHVSNLLRKTGTGSRTEAALWAVEHG 358 Query: 233 Y 233 Sbjct: 359 L 359 >gi|297582617|ref|YP_003698397.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141074|gb|ADH97831.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 218 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 2/100 (2%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEE 193 L + +E H A V + K A ++TERET+ + G G +++E Sbjct: 116 GIRTCLEGGLALEPHVAANVVPLLMNKPETKPEFPALPEDITERETTVIACVGRGLSNKE 175 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 I+E+L LSV TV + KL+ +R Q AIR G+ Sbjct: 176 ISEELYLSVGTVKNLISVILHKLELRDRTQLAIYAIRSGF 215 >gi|62179158|ref|YP_215575.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126791|gb|AAX64494.1| fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713620|gb|EFZ05191.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 241 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL + ++ I A Sbjct: 180 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 239 Query: 233 YI 234 + Sbjct: 240 LL 241 >gi|328885800|emb|CCA59039.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 197 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 152 ACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + L + L++RE L L +G ++ +I ++ LS T Sbjct: 95 MSPKASRALLRSHPGAGAPQDADVSRVGLLSDRERDVLVLVAEGLSNADIGTRIHLSAGT 154 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ S KL +R+QA A R G + Sbjct: 155 VKDHVSSILTKLRVSSRVQAALLAERAGLL 184 >gi|300934165|ref|ZP_07149421.1| putative transcription regulator [Corynebacterium resistens DSM 45100] Length = 240 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +++ LT RE L+L GYT E+AE+L +SV TV ++ + K NR Sbjct: 173 DEEKRLVLDELTRREKEVLRLLARGYTYREMAERLFISVKTVETHVSNILRKTQQSNRHA 232 Query: 224 AIAK 227 Sbjct: 233 LTRW 236 >gi|300783390|ref|YP_003763681.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792904|gb|ADJ43279.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 21/203 (10%) Query: 47 RQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV 106 + I + ++ + + L + H +G + + E + + Sbjct: 5 ERTRIVIVDDHPVVHDGVAAQLQRYPDMVVVGHAGTGAEAVTVCA------AEHPDVVLL 58 Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF 164 L A + + + ++FT+ E + +A + A G + Sbjct: 59 DLRLPDCLAADVVPALHRVSPDSRILLFTAFPEHVAVAPTLAAGACGILVKHAGAIAIRD 118 Query: 165 KKR-------------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 R +S+ +T RE L+L G+T+ EI +L LS++TV YL + Sbjct: 119 AIRSVVRTGAFRTGTPASSTAPVTAREYDVLRLVAAGHTNPEIGTELNLSINTVKTYLWT 178 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A NR Q IA A G + Sbjct: 179 VMQKLAARNRAQLIANARGQGLL 201 >gi|226362510|ref|YP_002780288.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240995|dbj|BAH51343.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 127 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 V++ A V + + LT RE L + DG ++ EI L +S Sbjct: 34 RVLLSGAHANSCVHAGLAARAETACPSDHDDPLTGREHEILGMIADGASNAEIGRDLFIS 93 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAK 227 +TV ++ + K+ NR A+AK Sbjct: 94 RNTVRFHVSNILRKMSVNNRTAAVAK 119 >gi|225620688|ref|YP_002721946.1| DNA-binding response regulator, LuxR family protein [Brachyspira hyodysenteriae WA1] gi|225215508|gb|ACN84242.1| DNA-binding response regulator, LuxR family protein [Brachyspira hyodysenteriae WA1] Length = 317 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NLT RE L DG T++E++ L +S++TVN ++ + K NR++ + K Sbjct: 259 NLTRREKEILSYLLDGKTNKEVSLILSISLNTVNNHVANIYEKSGVKNRVELVNK 313 >gi|213691407|ref|YP_002321993.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522868|gb|ACJ51615.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 220 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +NLT RET + L GYTS+EI + LG+ TV Y+ T K+D NR QA Sbjct: 151 EDAGQYHKNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQA 210 Query: 225 IA 226 + Sbjct: 211 VI 212 >gi|167902027|ref|ZP_02489232.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] Length = 279 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ + L G L + P L V+ Sbjct: 63 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 119 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 120 HYVPPSALNLTEPAARARDSRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217 >gi|116621568|ref|YP_823724.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224730|gb|ABJ83439.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 152 ACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ L S +L+ RE L+L +G TS++IA L L + TV +Y Sbjct: 130 VSDRLLQRIQRGDLETHDRSPLESLSPRELQVLRLVAEGKTSKDIAVLLDLGLQTVRSYR 189 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 + KL N A+ G Sbjct: 190 KTMMKKLGVNNVAGLTQLALAAGI 213 >gi|108760620|ref|YP_631897.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108464500|gb|ABF89685.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 223 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +K+ LT E L+ G ++ E+ + L TV +L K+ + ++ Sbjct: 151 AEKKLENPWALTPLEFEVLRYVAKGLSNAEVGHVMTLERRTVRTHLSHIYRKMGVNSHVE 210 Query: 224 AIAKAIRFGYI 234 A+ A+R G + Sbjct: 211 AVVMALRAGVV 221 >gi|86138703|ref|ZP_01057276.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. MED193] gi|85824763|gb|EAQ44965.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. MED193] Length = 204 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G +++EIA L L T+ ++ + KL+A NR QA A G Sbjct: 143 KLSPRENEVLSGLCKGQSTKEIARDLDLQEVTIKLHVRTLCRKLEAKNRTQAAMIAKEAG 202 Query: 233 Y 233 Sbjct: 203 L 203 >gi|327334996|gb|EGE76707.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1] Length = 179 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G F + ++ A + I L + L+ RE L+ Sbjct: 70 RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 128 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 129 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 179 >gi|326330805|ref|ZP_08197106.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] gi|325951335|gb|EGD43374.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%) Query: 153 CYQVITDFLELFK--KRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + L R++AA LTERE G G ++ EIA++L LS+ TV Sbjct: 141 ATRTLITRLRAEPTGDRAAAAGRRLEALTEREHEVALAVGRGLSNAEIAKELYLSIPTVK 200 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++ KL A NR+Q G + Sbjct: 201 AHVSRLFDKLGATNRVQIAITVHDAGLV 228 >gi|311742977|ref|ZP_07716785.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311313657|gb|EFQ83566.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 216 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 7/125 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS 168 G + L GY++ + + + QV+ F + + Sbjct: 86 DGDSVFAALRAGARGYLLKEAGADDVERTLAAVMRGEAVFGPRVAEQVVGFFSGIGRSSP 145 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A +LT RE L L G + IA +L +S TV + KL A R +A+A+A Sbjct: 146 QAFPHLTVREGEVLDLMARGLDNASIARRLFVSEKTVRNRVSDVLAKLQARTRAEAVARA 205 Query: 229 IRFGY 233 G Sbjct: 206 RDAGI 210 >gi|189219460|ref|YP_001940101.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Methylacidiphilum infernorum V4] gi|161075723|gb|ABX56609.1| transcriptional regulator [Methylacidiphilum infernorum V4] gi|189186318|gb|ACD83503.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Methylacidiphilum infernorum V4] Length = 227 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++S L++RE QL G G +S +IA++L LS+ TV AY S KL + + + Sbjct: 155 KTSPLGKLSDRELEVFQLIGKGLSSRQIADQLHLSIKTVEAYRASIKQKLKLQSGTELVH 214 Query: 227 KAI 229 AI Sbjct: 215 YAI 217 >gi|72163208|ref|YP_290865.1| regulatory protein LuxR [Thermobifida fusca YX] gi|71916940|gb|AAZ56842.1| regulatory protein, LuxR [Thermobifida fusca YX] Length = 286 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +++ + + + A A L+ RE L G T++E+AE LGL Sbjct: 192 RRRLVDVCRRTRLLAGRVPSADRSPAPAVAAVRLSPREREVLAEVARGCTNDEVAEALGL 251 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +TV +YL SA KL A NR+QA+ A G Sbjct: 252 LPNTVKSYLKSAMRKLGATNRVQAVNLARAAG 283 >gi|329961768|ref|ZP_08299799.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] gi|328531509|gb|EGF58349.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] Length = 186 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L L G ++EIA+KL +S+ TV ++ + T KL + A Sbjct: 116 PGEHELSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIYA 175 Query: 229 IRFGYI 234 + GY+ Sbjct: 176 VMHGYV 181 >gi|319940251|ref|ZP_08014603.1| response regulator protein [Streptococcus anginosus 1_2_62CV] gi|319810553|gb|EFW06889.1| response regulator protein [Streptococcus anginosus 1_2_62CV] Length = 227 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++++ E +Q G G +++EIA KL LS T+ YL KL+ +R Q A++ Sbjct: 155 EDMSQTEWKIIQQIGFGVSNKEIAAKLFLSEGTIRNYLSGILSKLNLRDRTQLAIWAVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|317403552|gb|EFV84049.1| hypothetical protein HMPREF0005_03096 [Achromobacter xylosoxidans C54] Length = 238 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182 GY+ S LA V + G L + LT+R+ L Sbjct: 127 RAGVAGYLPKASSPDALAAAVSLVLAGGECYPQPTARPLATAHAPLQELRELTQRQEEIL 186 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G T EI +++G+SV TV ++ + KL+A N+ +A A++ G + Sbjct: 187 QLLVQGKTMREIGQQVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMGLV 238 >gi|315617864|gb|EFU98462.1| response regulator [Escherichia coli 3431] gi|320184742|gb|EFW59534.1| response regulator [Shigella flexneri CDC 796-83] gi|323158603|gb|EFZ44617.1| response regulator [Escherichia coli E128010] gi|323165290|gb|EFZ51078.1| response regulator [Shigella sonnei 53G] gi|323180836|gb|EFZ66376.1| response regulator [Escherichia coli 1180] gi|323186794|gb|EFZ72114.1| response regulator [Escherichia coli RN587/1] gi|332095450|gb|EGJ00471.1| response regulator [Shigella dysenteriae 155-74] gi|332756063|gb|EGJ86416.1| response regulator [Shigella flexneri 4343-70] gi|332766645|gb|EGJ96849.1| bacterial regulatory s, luxR family protein [Shigella flexneri 2930-71] gi|333003002|gb|EGK22556.1| response regulator [Shigella flexneri VA-6] gi|333003353|gb|EGK22899.1| response regulator [Shigella flexneri K-218] gi|333017784|gb|EGK37091.1| response regulator [Shigella flexneri K-227] Length = 166 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 89 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 148 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 149 THLAIRHGL 157 >gi|302526449|ref|ZP_07278791.1| predicted protein [Streptomyces sp. AA4] gi|302435344|gb|EFL07160.1| predicted protein [Streptomyces sp. AA4] Length = 279 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELF--------KKRSSAARNLTERETSCLQLAGDGY 189 L E E V L +L+ RE L+ A G Sbjct: 174 DLEAVRESHAELRRIAAAVEDPELRARIDAVCQSLTGDPVRGPSLSPRELDVLEGAAAGQ 233 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ +IAE LGL TV +YL +A KLDA R+QA+ A R + Sbjct: 234 TNADIAEALGLGPETVKSYLRNAMRKLDAKTRLQAVNAARRANLL 278 >gi|296284992|ref|ZP_06862990.1| two component LuxR family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 216 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Query: 152 ACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 Q+ L L + LT RE L+L G+ +E+A+KL ++V TV Sbjct: 129 ISPQIARYLLNLVPQPEEPKDDGLEIRLTAREKDILRLIAHGFKRQEVADKLNITVGTVG 188 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL+ + QA+A A R G Sbjct: 189 THINNVYRKLEVGSNTQAVATANRLGL 215 >gi|307725916|ref|YP_003909129.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307586441|gb|ADN59838.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 225 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 5/109 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQL 184 ++FL + +D RS A +LT RE + Sbjct: 102 AMKAGATDFLAKPFRDQDMLDAVEQALASDAQRRAASRSVADLRRCYESLTPREREVMAF 161 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++IA +L LS TV + G A K+ A + + KA G Sbjct: 162 VAAGLMNKQIAGELNLSEITVKIHRGQAMRKMGARSLADFVRKAETLGL 210 >gi|302525732|ref|ZP_07278074.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434627|gb|EFL06443.1| two-component system response regulator [Streptomyces sp. AA4] Length = 217 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 4/124 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + V + + +LA +V Sbjct: 92 AALRAGAAGFLLKSVEAPRLIEAVRLVAAGEGVLAPQVTKRL----IAAFASTPAAPSPA 147 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LTERE L G G ++ EI +L + TV ++ KL +R+QA Sbjct: 148 PTGLADLTEREREVLGCLGAGLSNAEIGARLYIGEATVKTHVSRVLAKLGLRSRVQAAIL 207 Query: 228 AIRF 231 A Sbjct: 208 AQDH 211 >gi|167906142|ref|ZP_02493347.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] Length = 273 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 45 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 97 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + + L + +R + Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268 >gi|167851329|ref|ZP_02476837.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167899971|ref|ZP_02487372.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] Length = 85 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ + LT +E L+L G +++EIA + + TV +L + KLDA +R A+ Sbjct: 13 PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 72 Query: 226 AKAIRFGYI 234 +A+ G + Sbjct: 73 RRALVLGLL 81 >gi|126738141|ref|ZP_01753862.1| DMSO reductase regulatory protein DorX [Roseobacter sp. SK209-2-6] gi|126720638|gb|EBA17343.1| DMSO reductase regulatory protein DorX [Roseobacter sp. SK209-2-6] Length = 264 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 21/237 (8%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + F ++ L +L Sbjct: 25 RDDFPEVFRALLQTC--CQFESMILSRFSGTSAPICLYQDLDEMQAAISVEFYASGPYLL 82 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + P ++ + + + I ++ ++ + Sbjct: 83 DPLYQACRNNAEPGAYRLLDLAPETFFRSEYYKTFYRKISISDEIGILIKEDQNRWIVIS 142 Query: 134 FTSEFLMLA--NEVIIEAHGACYQVITDFLE------LFKKRSSAAR-----------NL 174 E + + + L +++ + A L Sbjct: 143 LARFARQPKFKPEDAQRLNAVFTLISSAALRHWGEAVTSQEKENTADWQQRMQTFGNGRL 202 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + RE + L G++S A LG++V TV + A KL ++ + A A R Sbjct: 203 SPREMEVVLLVLQGHSSPTAAAYLGITVGTVKVHRHHAYAKLGVASQAELFAMATRH 259 >gi|15965995|ref|NP_386348.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307314667|ref|ZP_07594266.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307322066|ref|ZP_07601443.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15075265|emb|CAC46821.1| Transcription regulator luxR family [Sinorhizobium meliloti 1021] gi|306892302|gb|EFN23111.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899000|gb|EFN29645.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 267 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 68/232 (29%), Gaps = 39/232 (16%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD----SGDIPNILIETYGDDFLFH 79 + + ++ +++ + +D + + D F H Sbjct: 34 MSTLMTFDYVVVFAYRG------KERPLDLYSTFDAEDHVLFVSLYQAGPYLL-DPFY-H 85 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA--GIAFPVR--------LGFHKN 129 P +W+ + S + G PV L + Sbjct: 86 AARAPKPGVWRMRELAPDRFFSSEYYRTYYVQTGLAEEVGFFVPVSEQVTVVLSLMRREA 145 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----------SAAR------ 172 V +EF +L + A + + A Sbjct: 146 TGVFSATEFALLKKAEPLVAAFVRHHWAELDRRFDTALAKKGRGRRKAAHPPADGVWRHL 205 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 NLTERE + ++L G++SE I KLG+S TV + + KL ++ Q Sbjct: 206 NLTEREAAIIELVLQGHSSESIGLKLGISTGTVKVHRRNVYRKLGISSQTQL 257 >gi|47564323|ref|ZP_00235368.1| DNA-binding response regulator, putative [Bacillus cereus G9241] gi|47558475|gb|EAL16798.1| DNA-binding response regulator, putative [Bacillus cereus G9241] Length = 204 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K I+ Sbjct: 138 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFNKLNVSSSLEAVTKGIKL 197 Query: 232 GYI 234 GYI Sbjct: 198 GYI 200 >gi|330465133|ref|YP_004402876.1| LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328808104|gb|AEB42276.1| LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 386 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R +A LT RE L G +++++A LG+SV TV ++ + K A +R +A Sbjct: 301 PRVAAVAELTGREVEVLDCLVAGMSNKQVARALGISVRTVTVHVSNLLRKTGAASRTEAA 360 Query: 226 AKAIRFGY 233 A+R Sbjct: 361 LWAVRQRL 368 >gi|327439322|dbj|BAK15687.1| DNA-binding HTH domain-containing protein [Solibacillus silvestris StLB046] Length = 73 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE +L Y++ EI+ KLG+S TV ++ + KL +R QAI + +R Sbjct: 10 LTKREREIFELLIKDYSTREISTKLGISEKTVRNHISNTIQKLGVSSRTQAILELLRL 67 >gi|317405619|gb|EFV85919.1| hypothetical protein HMPREF0005_01372 [Achromobacter xylosoxidans C54] Length = 239 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 9/220 (4%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + L ++ + A + + + + + D Sbjct: 10 AALLMALRETVAADHVSHVFYGHDGSVQYSSAASLLNQSLIEWTTTVYVDDQFYRRDPNY 69 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA--FPVRLGFHKNGY---V 132 L L G A + + + Sbjct: 70 ALLRDLACRPEHHPDLIIQAAAPERILDAEYRELLFERPGFASKISLIGARSEGASYINL 129 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDG 188 F+ +V+ + +L ++ ++ A L+ERE L G Sbjct: 130 YFSRSHPPGVTDVMRGRAPLLIALARRHHQLCRREAAPAPIWSDGLSEREVQVADLLRQG 189 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 T++E+ +LGLS TV Y K + + + + KA Sbjct: 190 RTAKEVGRELGLSPTTVVTYKNRIFKKSNVASLKEFLIKA 229 >gi|320109005|ref|YP_004184595.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319927526|gb|ADV84601.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 203 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Query: 140 MLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + +A ++ + + S LTERE L AG+G T+ E+A + Sbjct: 107 DRPAAELADAVRRVHRGLRVIDPDLAAEAWGSEVDPLTERERQILLRAGEGRTTAEVARE 166 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LGLS TV YL A KL AVNRI A A G++ Sbjct: 167 LGLSEGTVRNYLSEAMSKLGAVNRIDAARMARAKGWL 203 >gi|296168206|ref|ZP_06850198.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896822|gb|EFG76452.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1102 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E ++L G+G +++IA +L +S TV ++L KL +R+Q +A R Sbjct: 1043 ESLTPTELDVVRLVGEGLPNKDIAARLFISPRTVQSHLTHVYTKLAVSSRVQLAREAARH 1102 >gi|257067453|ref|YP_003153708.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558271|gb|ACU84118.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 255 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + SA +TERE +L G +++I E+L +SV TV +LG KL NR+Q Sbjct: 186 ADEPPSAPEGITEREWDVARLVARGLANQQIGEQLFMSVATVKTHLGRLYHKLQVTNRVQ 245 Query: 224 AIAKAIRFG 232 + + G Sbjct: 246 LAIRVLELG 254 >gi|256850848|ref|ZP_05556237.1| two-component system response regulator [Lactobacillus jensenii 27-2-CHN] gi|260661059|ref|ZP_05861973.1| two-component system response regulator [Lactobacillus jensenii 115-3-CHN] gi|282934481|ref|ZP_06339736.1| two-component response regulator [Lactobacillus jensenii 208-1] gi|297205722|ref|ZP_06923117.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii JV-V16] gi|256615910|gb|EEU21098.1| two-component system response regulator [Lactobacillus jensenii 27-2-CHN] gi|260547996|gb|EEX23972.1| two-component system response regulator [Lactobacillus jensenii 115-3-CHN] gi|281301428|gb|EFA93717.1| two-component response regulator [Lactobacillus jensenii 208-1] gi|297148848|gb|EFH29146.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii JV-V16] Length = 201 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++ T++E+A+KL LS TV Y+ S K +R++A+ A G Sbjct: 140 PLTNREMDILKMLEQVATTKELAQKLFLSEGTVRNYISSILSKTGTSSRLEALNLARNKG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|225351362|ref|ZP_03742385.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157706|gb|EEG70989.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 220 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S NLTERE +QL +GY + EIA KL LS TV + K + NR + Sbjct: 152 ENRFSGRFANLTERERDVMQLVAEGYDNREIAAKLFLSEGTVRNRISDILAKTNVTNRTK 211 Query: 224 AIA 226 Sbjct: 212 LAV 214 >gi|254472083|ref|ZP_05085484.1| two-component response regulator [Pseudovibrio sp. JE062] gi|211959285|gb|EEA94484.1| two-component response regulator [Pseudovibrio sp. JE062] Length = 202 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 25/90 (27%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E II A LT RE L G +++E Sbjct: 104 EKPFDVESIISRVREAVSRTAQASGANTMTFPGAETLTPRERQVLTEITAGSSNKEAGRN 163 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L +S TV + KL A N + Sbjct: 164 LKISPRTVEVHRARIMEKLGARNAADLVRI 193 >gi|33597570|ref|NP_885213.1| virulence factors transcription regulator [Bordetella parapertussis 12822] gi|33573998|emb|CAE38318.1| virulence factors transcription regulator [Bordetella parapertussis] Length = 233 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + LQL G ++++IA+ + LS TV+ Y KL+A + ++ I A R Sbjct: 173 LSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNL 232 >gi|158318331|ref|YP_001510839.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113736|gb|ABW15933.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 249 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 65/225 (28%), Gaps = 12/225 (5%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALD-----FPRRQQLICELHNYDLDSGDIPNIL 68 + + + I F + ++ + I L +P+ Sbjct: 28 VDDHPLWREALSRDIAEAGFVVVGTAGSVAQALRVLAATRPEIVVLD------LGLPDGS 81 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + P+ V S Q V + R Sbjct: 82 GVEVIRALV-GSAESPYPLTGAPASVLVVSASGEQADVLEAVKAGASGYLLKSARPEELV 140 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + G + + SS A LT RE L+L G Sbjct: 141 DAVRRTARGVAVFTAGLAALVLGENSRAARNSGSRSGPGSSTAPRLTAREVEVLRLVAKG 200 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + A +LG+S TV ++ + KL NR++ A+R GY Sbjct: 201 LSARDAARQLGVSHRTVQNHVHNVLGKLQLRNRVELTRFAVREGY 245 >gi|170022343|ref|YP_001718848.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169748877|gb|ACA66395.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] Length = 196 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT RE L +G EIAE LGLS TV+ + + KL N ++ K Sbjct: 135 AVDPLTRREREVAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 192 >gi|330468229|ref|YP_004405972.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811200|gb|AEB45372.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 208 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 7/101 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +G + + EV+ L+ RE L+L +G Sbjct: 113 DGIRRAAAGDSPFSQEVLRRLVHRAVHA-------RTGSPEPVGGLSAREQEVLRLVAEG 165 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++ EIAE+L + V TV ++ S K + NR++ A Sbjct: 166 LSNAEIAERLHIGVTTVKTHITSLMTKTGSPNRVRLALLAH 206 >gi|293610601|ref|ZP_06692901.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|292826945|gb|EFF85310.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|325123833|gb|ADY83356.1| two component transcriptional regulator, LuxR family [Acinetobacter calcoaceticus PHEA-2] Length = 216 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 135 LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 195 GVQNRTQAV 203 >gi|271965253|ref|YP_003339449.1| ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270508428|gb|ACZ86706.1| ATPase-like protein [Streptosporangium roseum DSM 43021] Length = 937 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 36/100 (36%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + F L + I L + R A L++RE + Sbjct: 833 DRHATSALAELAERFGALGATHDAARCRRALRDIGAESPLPRGRKGTAGALSQREREVAR 892 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L G T+ EIA+ L LS TV ++ + KL +R + Sbjct: 893 LVALGRTNREIADVLFLSTRTVETHVATVLRKLGVRSRTE 932 >gi|262370891|ref|ZP_06064215.1| two-component system response regulator protein [Acinetobacter johnsonii SH046] gi|262314253|gb|EEY95296.1| two-component system response regulator protein [Acinetobacter johnsonii SH046] Length = 216 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 135 FDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 195 GVQNRTQAV 203 >gi|302558364|ref|ZP_07310706.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302475982|gb|EFL39075.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 213 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + +LT RE L G+G ++ IA++L ++ TV ++ Sbjct: 131 RLIAEFAAKPARPVTADPAVLDSLTRREREVLSCLGEGLSNAGIADRLDMAEATVKTHVS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 KL+ +R+QA A G Sbjct: 191 RLLGKLELRSRVQAAVLAQELGI 213 >gi|85713171|ref|ZP_01044202.1| Response regulator, LuxR family protein (CheY, HTH domains) [Idiomarina baltica OS145] gi|85692995|gb|EAQ30962.1| Response regulator, LuxR family protein (CheY, HTH domains) [Idiomarina baltica OS145] Length = 210 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 34/70 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ + LT ++ L +G +++IA +L ++ TV A++ + KL +R Q Sbjct: 141 DQELARKVSELTPQQYRVLHFLHEGLLNKQIAYQLNITEATVKAHITAIFRKLGVYSRTQ 200 Query: 224 AIAKAIRFGY 233 A+ A R Sbjct: 201 AVLVAERLQL 210 >gi|314915868|gb|EFS79699.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] Length = 206 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G F + ++ A + I L + L+ RE L+ Sbjct: 97 RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|310830322|ref|YP_003965422.1| two component LuxR family transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753228|gb|ADO44371.1| two component LuxR family transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 217 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 152 ACYQVITDFL---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++T+ L +RS++ LT RE L + G++++EIA + TV + Sbjct: 127 LAARILTEIRVEERLSPQRSASLDLLTPREAEVLNMVAAGHSNKEIARLGDMQEKTVKHH 186 Query: 209 LGSATVKLDAVNRIQAIAK 227 + KL A NR +A Sbjct: 187 MTRILHKLGARNRTEAALL 205 >gi|282853097|ref|ZP_06262434.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582550|gb|EFB87930.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922742|gb|EFS86573.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965826|gb|EFT09925.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314982968|gb|EFT27060.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091273|gb|EFT63249.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094508|gb|EFT66484.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315105228|gb|EFT77204.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327329003|gb|EGE70763.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 218 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217 Query: 234 I 234 I Sbjct: 218 I 218 >gi|258652644|ref|YP_003201800.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555869|gb|ACV78811.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 220 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A LT+RE L L G + EIA LS +T+ +Y+ S K+ +R QA+ Sbjct: 140 DWPGRAEGLTDREAEILALITQGRGNAEIASMTYLSPNTIKSYIRSVYRKIGVSSRTQAV 199 Query: 226 AKAIRFGY 233 + G+ Sbjct: 200 LWGVHHGF 207 >gi|302553857|ref|ZP_07306199.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471475|gb|EFL34568.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 325 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 166 KRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R +A L+ RE + L G +++IA +S TV ++ KL + +R Sbjct: 242 GRPAAPDRSRFQLSTREAEIMDLIASGMNNQQIAATCFISEKTVKNHINRIFAKLHSTSR 301 Query: 222 IQAIAK 227 +A+AK Sbjct: 302 GEAVAK 307 >gi|251791073|ref|YP_003005794.1| DNA-binding transcriptional activator UhpA [Dickeya zeae Ech1591] gi|247539694|gb|ACT08315.1| two component transcriptional regulator, LuxR family [Dickeya zeae Ech1591] Length = 196 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 SS LT RE + G + IA +LGLS TV+ + + KL N ++ Sbjct: 131 ASSRRDPLTRRERQVAEKLAQGMAVKAIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|269125895|ref|YP_003299265.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310853|gb|ACY97227.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 218 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEFLMLA 142 + ES L L G + V GY++ + L L Sbjct: 57 LDVRLGAESGLDLCRDLTGRSPDTRVVFLSVYDDEQYVFEALRAGARGYLLKRVDGLELV 116 Query: 143 NEVIIEAHG-------ACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEE 193 + A G ++ L + A R LT+RE+ L L G +++ Sbjct: 117 RRLEEVAQGETVVDPTLAGRMAASAARLNRGEFWPGAHRGLTQRESEVLSLLVAGLSNKA 176 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +A +L +S T+ ++L + KL+ +R AIA A+R G Sbjct: 177 MAARLVVSEETIKSHLRALYRKLEVTDRSGAIAVALREGL 216 >gi|126443348|ref|YP_001062270.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126222839|gb|ABN86344.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] Length = 273 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 45 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 97 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + + L + +R + Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268 >gi|116621654|ref|YP_823810.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224816|gb|ABJ83525.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 228 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 31/77 (40%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + LTERE L L G +++E A +LG+S T +++ KL Sbjct: 150 RRMFTPDEASVRLVFALTERERQVLVLIAAGKSTKEAAAQLGISYKTADSHRSRILEKLG 209 Query: 218 AVNRIQAIAKAIRFGYI 234 + AIR G I Sbjct: 210 VHETASMVRYAIRAGLI 226 >gi|328882352|emb|CCA55591.1| hypothetical protein SVEN_2305 [Streptomyces venezuelae ATCC 10712] Length = 598 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 11/115 (9%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----------RNLTERET 179 ++ ++ E GA + R +AA LT RE Sbjct: 484 MLLAAADRAAGDEEGARLELGAARAAFERLGAVPDARRAAALLTGGSRRRLPGGLTAREA 543 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G T+++IA L +S HTV +L + KL +R A A A G + Sbjct: 544 EVLRLVAEGGTNKDIARTLVISEHTVARHLNNIFAKLGVGSRASATAYAYAHGLV 598 >gi|318060080|ref|ZP_07978803.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318080793|ref|ZP_07988125.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 239 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +I ++L+ ++ A LT RE L+L +G++S++IA L +SV TV + + Sbjct: 156 ALIRNYLDQARRGEEPAGGSTLTPREEEILKLVAEGHSSKDIAALLVISVKTVERHRANT 215 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R++ AIR G + Sbjct: 216 LHKLGLKDRLELTRYAIRAGLV 237 >gi|294815678|ref|ZP_06774321.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064] gi|326444025|ref|ZP_08218759.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294328277|gb|EFG09920.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Query: 154 YQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + L +R A + L+ RE L+L +G +++ I +GLS TV Sbjct: 133 AAPMGAGARLGHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVK 192 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L KL +R +A A+R G I Sbjct: 193 SHLARIARKLGTGDRAGMVAVALRTGII 220 >gi|291302859|ref|YP_003514137.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572079|gb|ADD45044.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 155 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + S LT+RE L +G ++ EI +L ++ T+ + KLDA +R Sbjct: 82 ALSRPKPSGTLTLTDREREVLGGMAEGKSNAEIGRELFVTEDTIKTHARRLFRKLDARDR 141 Query: 222 IQAIAKAIRFGYI 234 A+++ R + Sbjct: 142 AHAVSQGFRLELL 154 >gi|260885201|ref|ZP_05734512.2| transcriptional regulator, LuxR family domain protein [Prevotella tannerae ATCC 51259] gi|260853156|gb|EEX73025.1| transcriptional regulator, LuxR family domain protein [Prevotella tannerae ATCC 51259] Length = 235 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 6/158 (3%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 + + I S LS L + G F + + Sbjct: 74 LLPSFSALDQSAGFFHFFISSETLLSH--AQFFLQRKQQTIVLMHGEETLPLQGFRTFNV 131 Query: 140 MLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 +V++ + Q + LT RET L+L G ++EIA Sbjct: 132 RQPEDVLLRSILQMAQAGHRHRPRPVLEAQGEVQRISPLTPRETEVLRLVVSGLLNKEIA 191 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +LG+S+ TV ++ + T KL + A+ G Sbjct: 192 NRLGVSLTTVISHRKNLTAKLGFRSVSALTIYAVTHGI 229 >gi|284029107|ref|YP_003379038.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808400|gb|ADB30239.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 216 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ + ++ LT RE L G G ++EEI + L LS T Y+ Sbjct: 131 VAKLMMHRISRMPSRKVQEETLAGLTARELDILAHVGRGLSNEEIGQALFLSPETARTYV 190 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL +R Q + A + G + Sbjct: 191 SRLLAKLGVRDRSQLVVLAHKAGLV 215 >gi|237730506|ref|ZP_04560987.1| transcriptional regulator FimZ [Citrobacter sp. 30_2] gi|226906045|gb|EEH91963.1| transcriptional regulator FimZ [Citrobacter sp. 30_2] Length = 210 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL ++ I A Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIYAKLGLHTIVELIDYAKMHE 208 Query: 233 Y 233 Sbjct: 209 L 209 >gi|218130412|ref|ZP_03459216.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697] gi|217987413|gb|EEC53743.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697] Length = 236 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E S L+ G T++EIA + LS HT+N++ + KL N +A A++ Sbjct: 167 DLLTSAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKA 226 Query: 232 GYI 234 G + Sbjct: 227 GIV 229 >gi|154496530|ref|ZP_02035226.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC 29799] gi|150274163|gb|EDN01254.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC 29799] Length = 817 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K LTERE QL G + EIAEKL +S TV +++ S K + R + Sbjct: 753 EKYPEQMGQLTEREREVAQLVAAGLRNREIAEKLFISEETVKSHIRSIFNKTNIDRRSRL 812 Query: 225 I 225 + Sbjct: 813 V 813 >gi|149926392|ref|ZP_01914653.1| Two Component Transcriptional Regulator, LuxR family protein [Limnobacter sp. MED105] gi|149824755|gb|EDM83969.1| Two Component Transcriptional Regulator, LuxR family protein [Limnobacter sp. MED105] Length = 211 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 +R G L+ A + + + L + A + L+ERE Sbjct: 94 IRSGASGYLCKDCDRSDLVNAIHTVAQGRRYISANTAELLAREMTGESDKPAHQELSERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + IA+ L LSV TV+ Y KL + + A + G + Sbjct: 154 RQVFMRLVRGESVSAIAQVLHLSVKTVSTYRSRLLDKLGVNSNAELATYAHQHGLL 209 >gi|33601970|ref|NP_889530.1| virulence factors transcription regulator [Bordetella bronchiseptica RB50] gi|33576408|emb|CAE33486.1| virulence factors transcription regulator [Bordetella bronchiseptica RB50] Length = 227 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + LQL G ++++IA+ + LS TV+ Y KL+A + ++ I A R Sbjct: 167 LSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNL 226 >gi|308178660|ref|YP_003918066.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307746123|emb|CBT77095.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 201 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 8/170 (4%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 GD+ + P+ + + + + + L+ + Sbjct: 34 ADGDEVVPAL--TGYPVDVALLDIQMPRQDGLRTAAELKLSHPEVKVLILTTFDRPGYFR 91 Query: 131 YVIFTSEFL----MLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQL 184 + +I A + + D + + A LTERE L L Sbjct: 92 QAFESGAHGFLVKDSPPAELIAAIRRVHSGDKVVDPQRAMRSVGAEANPLTEREREILGL 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G +IA + LS TV +L +A K + NRI+A +A G+I Sbjct: 152 AAAGAPVSQIASGVHLSAGTVRNHLSNAIGKTNTANRIEAARRAREMGWI 201 >gi|254161968|ref|YP_003045076.1| response regulator [Escherichia coli B str. REL606] gi|253973869|gb|ACT39540.1| response regulator [Escherichia coli B str. REL606] gi|253978063|gb|ACT43733.1| response regulator [Escherichia coli BL21(DE3)] Length = 169 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 92 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 151 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 152 THLAIRHGL 160 >gi|254193239|ref|ZP_04899674.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|169649993|gb|EDS82686.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] Length = 262 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 34 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 85 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 86 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 142 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + L + +R + Sbjct: 143 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 202 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 203 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 257 >gi|106879455|emb|CAJ20008.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 234 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G + +IA +L ++ TV +L + KLDA R +A+ KA+ G Sbjct: 162 LTARELQVVALVARGLRNSQIARELVITEGTVKRHLSNVYAKLDAACRTEAVRKAVERGM 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|332528409|ref|ZP_08404401.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332042088|gb|EGI78422.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 312 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 39/155 (25%), Gaps = 6/155 (3%) Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 L D W + L+ A + Sbjct: 151 LGVLLLDSQGRVAWRSPQATRWLQQIPALAEGEAAVRHWLLQLLEQGEALVTLS------ 204 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + E ++ +R + LT RET L Sbjct: 205 DGSQLQARHLGPGGPGERMVLLRHLPLAAAEAVARDPSQRRLSGAALTPRETEVLSWLAK 264 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 G T+ +I + LG+S TVN +L KL R Sbjct: 265 GKTNRDIGDILGMSPRTVNKHLEHIFEKLGVETRT 299 >gi|315106440|gb|EFT78416.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 206 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G F + ++ A + I L + L+ RE L+ Sbjct: 97 RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|291614056|ref|YP_003524213.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584168|gb|ADE11826.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 208 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ERE + L L G + E+A +L +S TV+ + KL+ N + I + Sbjct: 144 PREVLSEREYTILHLLVQGKSVNEVAAELVISNKTVSTHKARLMQKLNLQNNAELIRYGV 203 Query: 230 RFGYI 234 G + Sbjct: 204 EHGLV 208 >gi|291302798|ref|YP_003514076.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572018|gb|ADD44983.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 900 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 65/234 (27%), Gaps = 19/234 (8%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +L + + R+ + + + + + + Sbjct: 669 DLESGDERLGTHLLHRH-VFLCLAALSEGDIDRAEEFLSRALSNPALRR---VAPVEVRP 724 Query: 76 FLF-HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + V E + +L V IA G + + Sbjct: 725 VLAVGARIRHARLAAGEQPRHDVAELNAELPVHGRLDKAWHDTIAAMTTGGTAQAWADVV 784 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------------SAARNLTERETS 180 + + + + QV + + + LTERE Sbjct: 785 AAWRALDQPYELALSLHIASQVTGNRAQARESAELITALGAAPLVTGDGDTSGLTEREHE 844 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G ++ +IA KL +S T ++ KL A R +A A + G + Sbjct: 845 VLALIVEGLSNRQIAAKLYISPSTAGVHVSHILAKLGAATRTEAATIAHKRGLV 898 >gi|169634739|ref|YP_001708475.1| putative two-component response regulator [Acinetobacter baumannii SDF] gi|169153531|emb|CAP02698.1| putative two-component response regulator [Acinetobacter baumannii] Length = 218 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 135 LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 195 GVQNRTQAV 203 >gi|167918297|ref|ZP_02505388.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 279 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ + L G L + P L V+ Sbjct: 63 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 119 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 120 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217 >gi|225155200|ref|ZP_03723695.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224804147|gb|EEG22375.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 240 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 11/166 (6%) Query: 78 FHFNSGLLP-IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNG 130 P ++ + S L + + +G Sbjct: 59 RQLVHRTRPDVLVSDL--SMPGGSGVGFLRNLRRECPDTRIVVLTMHATALAMQDAFDSG 116 Query: 131 YVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 F ++ +I H + + ++ S L RE LQ G Sbjct: 117 AHAFVAKDDAFDTLVSIIRRVHSGEEFLFSRTMKEVTGGSQETPRLAPREREVLQGITKG 176 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++EI +L LS TV Y G K + + I A+ G + Sbjct: 177 LSTKEIGAQLFLSPKTVEVYRGRLMKKFNVTKGTELIHHAVASGIV 222 >gi|149375328|ref|ZP_01893099.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter algicola DG893] gi|149360364|gb|EDM48817.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter algicola DG893] Length = 213 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 1/121 (0%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARN 173 I+ + G + E ++ A + + A C + Sbjct: 93 REYISQLMFHGAKGYILKDVSVEEMVSAIRTVADGATYICRAATETLFRHGETMEPVESK 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G S+ I+ +L + V TV + + KLD + A Sbjct: 153 LTPREEAILSRVAKGLNSKAISNELNICVRTVETHRQNIKSKLDLNTTAELTKYAYDQQL 212 Query: 234 I 234 + Sbjct: 213 L 213 >gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 237 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + ++ L + + T RE+S LQL +G ++EI Sbjct: 138 AARFADADMGQMAKQITEIRSLLAQAEAL-PAQEPVQHSFTPRESSVLQLVAEGLMNKEI 196 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ +K +R + + A++ + Sbjct: 197 ARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRLV 236 >gi|146291641|ref|YP_001182065.1| response regulator receiver protein [Shewanella putrefaciens CN-32] gi|145563331|gb|ABP74266.1| two component transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] Length = 200 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + L F+K+S LTERE L G T+++I+E + LS+ T+ Sbjct: 111 ALVQAIEKAQCESLATFEKQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170 Query: 206 NAYLGSATVKLDAVNRIQAI 225 + KL+ N + + Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190 >gi|309789333|ref|ZP_07683923.1| response regulator [Shigella dysenteriae 1617] gi|308922727|gb|EFP68244.1| response regulator [Shigella dysenteriae 1617] gi|323174572|gb|EFZ60193.1| response regulator [Escherichia coli LT-68] gi|332757472|gb|EGJ87807.1| response regulator [Shigella flexneri K-671] gi|333017529|gb|EGK36841.1| response regulator [Shigella flexneri K-304] Length = 164 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 87 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 146 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 147 THLAIRHGL 155 >gi|320106542|ref|YP_004182132.1| LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925063|gb|ADV82138.1| transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 236 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L +++ T RE L+L G+T+ +IA KL + T ++G K+ N Sbjct: 154 LRSPEEKERPELRFTPREKQVLELLAAGHTNRDIAGKLSIDETTAKTHVGRLLRKIGVPN 213 Query: 221 RIQAIAKAIRFGYI 234 R+ A+ + Sbjct: 214 RVGLALYAVEKQIV 227 >gi|300787361|ref|YP_003767652.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796875|gb|ADJ47250.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 227 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 1/197 (0%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 + A + ++ + + D + + G + + P + Sbjct: 28 LAVAGEAGDGREALRLVRELRPDVVVMDIRMPGMDGIEATRRATAEPHPPKVLVLTTFDD 87 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 E G L + + L + + +I + G Sbjct: 88 DEYVYGALRAGASGFLLKSMALNAI-LDAIRVVAAGDALIAPSVTRRLIADFAGTAGPAA 146 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + S +T+RE L L G G ++ EIAE+L +S T ++ KL+ Sbjct: 147 PEPDTEPAADSGLLAEITDREREVLALVGQGLSNTEIAERLVISAATAKTHVARLFAKLE 206 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R+ A G + Sbjct: 207 ARDRVHLAIIAFEAGLV 223 >gi|163816627|ref|ZP_02207990.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759] gi|158447884|gb|EDP24879.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759] Length = 217 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 157 ITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ +RS A ++ +E ++L DG ++EIA +L LS TV Y+ S Sbjct: 137 HSESHSTDVERSPFADTQYEISSKEMDIIRLVADGLNNKEIASRLFLSEGTVRNYISSIL 196 Query: 214 VKLDAVNRIQAI 225 KL +R Q Sbjct: 197 DKLCLRDRTQLA 208 >gi|158316741|ref|YP_001509249.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112146|gb|ABW14343.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 231 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTER 177 + G L+ A + +T + + LT++ Sbjct: 116 IMAGAAGYVLKQIRGTALVDAVRQVAAGQSLLDPAVTSRVLFRLREGPVEDERLAGLTDQ 175 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L L +G T+ +IA ++ L+ TV Y+ S KL +R QA A + Sbjct: 176 ERRILALIAEGLTNRQIAARMFLAEKTVKNYVSSMLSKLGMESRTQAAVFATKL 229 >gi|160890178|ref|ZP_02071181.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492] gi|156860566|gb|EDO53997.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492] Length = 254 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + L+ RE L+L G+ S+EIA +LG+S++TVN + + KL+A N ++AI Sbjct: 188 SPDKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSKLNANNIMEAIHIV 247 Query: 229 IRFGY 233 G Sbjct: 248 ENLGI 252 >gi|149370505|ref|ZP_01890194.1| two-component response regulator [unidentified eubacterium SCB49] gi|149356056|gb|EDM44613.1| two-component response regulator [unidentified eubacterium SCB49] Length = 214 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + L + +T++EIA++L LS HT+ +Y + KL+ N AI+ GY Sbjct: 152 LTKREVEVISLIAEEFTTQEIADQLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGY 211 Query: 234 I 234 + Sbjct: 212 V 212 >gi|78062243|ref|YP_372151.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77970128|gb|ABB11507.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 913 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 9/146 (6%) Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 E + + + + + + G ++ A+ + Sbjct: 765 ERAAALDTFAEVLEVAEPAGIYR----SIVDQGPEIGELLQAMRDQARASSQTRDRLAYI 820 Query: 154 YQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ R++ L+ RE ++L G +++EIA LG++ TV ++ Sbjct: 821 ERLLDGCRAQYQQDAQPARAAQRDMLSVRERDIVELIAHGQSNKEIARTLGIAPETVKSH 880 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + S +KL+ R +A+A A G + Sbjct: 881 IKSLFMKLEVDKRARAVAVAQSLGLL 906 >gi|42519536|ref|NP_965466.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|41583825|gb|AAS09432.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] Length = 224 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ E +Q G G +++EI+ KL LS TV Y+ KL+ +R Q A++ G Sbjct: 158 SKSEWCVIQQVGLGLSNKEISTKLFLSEGTVRNYISKILEKLNLRDRTQLAIWAVQTG 215 >gi|146280078|ref|YP_001170235.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC 17025] gi|145558319|gb|ABP72930.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC 17025] Length = 243 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+R+ L+ G G +++EIA +L +S TV ++ K NR Q A+R Sbjct: 172 PLTDRQNEVLRSLGAGASNKEIARQLSISEATVKIHVRHLMRKYGVSNRTQVAILAMR 229 >gi|332664117|ref|YP_004446905.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332931|gb|AEE50032.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 211 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G + +IAE L + TV +++ + KL+ ++ AI KA Sbjct: 151 LTPREREVLSWMARGKSYTQIAEILFVDKETVRSHIKNIYGKLEVHSKADAIEKATLEKL 210 Query: 234 I 234 I Sbjct: 211 I 211 >gi|323137329|ref|ZP_08072407.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322397316|gb|EFX99839.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 220 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT+RE + L G + EIA ++GL+ TV ++ + KL +R Sbjct: 150 RAASPSAEDEEPLTDREKAVLAHVAAGKGNREIAREMGLAEGTVKNHVSTILAKLHLRSR 209 Query: 222 IQAIAKAI 229 + +A+ Sbjct: 210 TELAIRAL 217 >gi|307726840|ref|YP_003910053.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587365|gb|ADN60762.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 223 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 3/120 (2%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 + + V V + ++ E+ + + + + +++ + Sbjct: 95 LAAALRGGARGYLLKTVDSDAMTTAIVRTMAGESAISPEMTGKLVS-AFNALQNGVKVDE 153 Query: 166 KRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R R+L+ RE L+ G T++EIA L ++ TV ++ KL +R+Q Sbjct: 154 GRPEQNPIRDLSVREAEILEHIAQGRTNKEIARALNIAEATVKIHVQHILRKLKLSSRVQ 213 >gi|258655123|ref|YP_003204279.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558348|gb|ACV81290.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 209 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +R+ LT RE L++ DG ++ IA +LG++ TV A+L S ++ +R Sbjct: 138 LDSRRAPQPNLLTAREEQVLRMVADGLANKMIARRLGITERTVKAHLTSVYQRIGVTDRT 197 Query: 223 QAIAKAIRF 231 QA R Sbjct: 198 QAALWIQRR 206 >gi|190572437|ref|YP_001970282.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010359|emb|CAQ43967.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 200 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 E + +A Q I +L S A LT+RE L+LAG+G T+ EIAE+L Sbjct: 105 DAPAENLADALRKVKQGIRAIDPQLALDAWSQADPLTDRERRVLRLAGEGRTASEIAEQL 164 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GLS TV YL KL NRI+A A + G++ Sbjct: 165 GLSHGTVRNYLSECIGKLGVANRIEAYRMARQKGWL 200 >gi|169794379|ref|YP_001712172.1| putative two-component response regulator [Acinetobacter baumannii AYE] gi|184159817|ref|YP_001848156.1| response regulator [Acinetobacter baumannii ACICU] gi|213159043|ref|YP_002321041.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|215481936|ref|YP_002324118.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter baumannii AB307-0294] gi|239503857|ref|ZP_04663167.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter baumannii AB900] gi|260550220|ref|ZP_05824433.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260557934|ref|ZP_05830147.1| two-component system response regulator protein [Acinetobacter baumannii ATCC 19606] gi|301347127|ref|ZP_07227868.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter baumannii AB056] gi|301513592|ref|ZP_07238829.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter baumannii AB058] gi|301597105|ref|ZP_07242113.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter baumannii AB059] gi|332854806|ref|ZP_08435569.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332868936|ref|ZP_08438495.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|332872813|ref|ZP_08440778.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|169147306|emb|CAM85167.1| putative two-component response regulator [Acinetobacter baumannii AYE] gi|183211411|gb|ACC58809.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078647|gb|ABO13693.2| putative two-component response regulator [Acinetobacter baumannii ATCC 17978] gi|213058203|gb|ACJ43105.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|213985989|gb|ACJ56288.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter baumannii AB307-0294] gi|260406748|gb|EEX00228.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260408725|gb|EEX02030.1| two-component system response regulator protein [Acinetobacter baumannii ATCC 19606] gi|322509730|gb|ADX05184.1| Putative two-component response regulator [Acinetobacter baumannii 1656-2] gi|323519745|gb|ADX94126.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332727808|gb|EGJ59212.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332732979|gb|EGJ64181.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|332738974|gb|EGJ69836.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 216 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 135 LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 195 GVQNRTQAV 203 >gi|311745099|ref|ZP_07718884.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1] gi|126577613|gb|EAZ81833.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1] Length = 216 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G +I E L +S TV ++ + KL ++++A+ KA++ Sbjct: 154 LTKREVEILEQTSKGLNYNQIGENLFISPKTVRKHIENIYHKLQVHSKLEAVQKAVKNRI 213 Query: 234 I 234 I Sbjct: 214 I 214 >gi|94266341|ref|ZP_01290042.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93453055|gb|EAT03537.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 218 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G ++ EI +S +TV +++ K NR+ A+ G Sbjct: 154 GLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213 Query: 233 Y 233 Y Sbjct: 214 Y 214 >gi|19553606|ref|NP_601608.1| DNA-binding HTH domain-containing protein [Corynebacterium glutamicum ATCC 13032] Length = 873 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---------RSSAARNLTERETSC 181 + + + A + L + RS A LT +E Sbjct: 760 ALRRQGQRRRADEQFARAASLFQDMGADAMVTLANRERRVGGLGQRSEQAGGLTPQEYEI 819 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L G+ + E+A++L LS TV +L KL NR++ Sbjct: 820 ARLVSSGHANREVAQELFLSPKTVEYHLTRVYKKLGIRNRMELA 863 >gi|332995574|gb|AEF05629.1| two-component response regulator [Alteromonas sp. SN2] Length = 297 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T+RE+ L G TS EI++ L +S T N +L KL N+ A A A+R Sbjct: 236 PITKRESEVLYWISFGKTSWEISQILDISPRTANKHLEQIYKKLGVDNKTSAAAIALRL 294 >gi|329947896|ref|ZP_08294828.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523520|gb|EGF50618.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 203 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 58/170 (34%), Gaps = 10/170 (5%) Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH--KN 129 GD+ L + + + + + G +P + Sbjct: 37 RGDEVLPAVREH--AVDVALVDIDMPGRDGLAATAEVVGSGVPCRCLIVTTFGRPGYLSR 94 Query: 130 GYVIFTSEFL--MLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQL 184 G + F+ E + EA + +VI L LT+RE LQ Sbjct: 95 GMEAGAAGFIVKDTPPEELAEAIRKVHAGLRVIDPELAQESVLLGP-NPLTDREKEVLQA 153 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G + EIA +L L TV YL SA K A NR +A A G++ Sbjct: 154 AATGADAREIAARLHLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203 >gi|297518835|ref|ZP_06937221.1| response regulator [Escherichia coli OP50] gi|323186310|gb|EFZ71660.1| response regulator [Escherichia coli 1357] Length = 162 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 85 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 144 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 145 THLAIRHGL 153 >gi|226363828|ref|YP_002781610.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242317|dbj|BAH52665.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 546 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEE 193 + + A + D L + ++ + LT RE L+L G ++ Sbjct: 442 DDTAQMEHDLASATYRQLGALPDLERLRAEFRSDAADSTPLTPREVCVLRLVAAGKSNRA 501 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A L LS TV +L + VKL +R A A A + Sbjct: 502 VATDLFLSEKTVARHLSNIFVKLGISSRSAATAYAYEHHLV 542 >gi|254382332|ref|ZP_04997692.1| response-regulator protein [Streptomyces sp. Mg1] gi|194341237|gb|EDX22203.1| response-regulator protein [Streptomyces sp. Mg1] Length = 221 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 40/105 (38%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++A V + + ++A +LT RE L G+G Sbjct: 107 EAVRTVGRGEGLIAPAVTRRLIAEFAAPRPPRPAVPPETAAAVASLTRREREVLGRLGEG 166 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ EIA +L L+ TV ++ KL+ +R QA A G Sbjct: 167 LSNAEIAGRLELAEGTVKTHVSRVLGKLELRSRAQAAVLARELGI 211 >gi|113866565|ref|YP_725054.1| response regulator [Ralstonia eutropha H16] gi|113525341|emb|CAJ91686.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 208 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 40/81 (49%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + ++ ++R S L+ RE + LQ G++++ IA +L +S TV+ + + Sbjct: 127 MHTLETVRQIGEQRESGFARLSNREITILQYLARGHSNKSIAAQLLISSKTVSTHKANIM 186 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ + ++ + A R + Sbjct: 187 AKLNVGSLVEMVDYARRHQLV 207 >gi|332991726|gb|AEF01781.1| two component LuxR family transcriptional regulator [Alteromonas sp. SN2] Length = 219 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT +E + L+ G ++ IA +L +S TV +++ S KL A NR++ +A A Sbjct: 152 RSLTRKELAVLKYLTQGLANKVIAYELNISETTVKSHVSSILKKLGASNRVKVVASA 208 >gi|296101290|ref|YP_003611436.1| LuxR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055749|gb|ADF60487.1| LuxR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 206 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L+ R+ L L G ++++I LG++ TV +L + +L NR +A Sbjct: 141 PSPLCTLSPRQREILHLVVQGNSNKQICRVLGIAEGTVKNHLHALFRQLGVRNRTEAAMI 200 >gi|302526791|ref|ZP_07279133.1| predicted protein [Streptomyces sp. AA4] gi|302435686|gb|EFL07502.1| predicted protein [Streptomyces sp. AA4] Length = 71 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ L ERE L+L +GY++ EIA +LG S HTV L +L NR Sbjct: 1 MDGEAAYRPQLGERELRVLRLVAEGYSNSEIAAELGWSEHTVKNALYDLMARLGVRNRAH 60 Query: 224 AIAKAIRFGYI 234 A A A+R G I Sbjct: 61 AAAYAVRNGLI 71 >gi|168185605|ref|ZP_02620240.1| response regulator [Clostridium botulinum C str. Eklund] gi|169296459|gb|EDS78592.1| response regulator [Clostridium botulinum C str. Eklund] Length = 206 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L L G+G +++EI++K+ LS T+ Y+ + KL +R Q Sbjct: 148 LTEREFEILALIGEGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIY 201 >gi|187923501|ref|YP_001895143.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714695|gb|ACD15919.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 522 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 2/114 (1%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P + + E + ++ + R+ A L+ RE Sbjct: 411 PAFSPEQAAALLDEQARAGRFDAEAVEAI--VSSELGDLPASGERGRTPKAGLLSPREAE 468 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G +++E+A L LS TV ++ S KL+ R A KA G I Sbjct: 469 VLKHISLGASNKEVARILELSPSTVRTHVESVFRKLECSTRAAATLKASALGCI 522 >gi|116251612|ref|YP_767450.1| two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256260|emb|CAK07341.1| putative two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 219 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERET 179 V G + ++F + + + ++ + + R LT RE Sbjct: 100 VLTGHGGQAMTVNATKFHVSFIPQPFDLNALAEKIHAAIRTTMEIGRLEGNYRTLTPRER 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++ +G ++++A KL +S TV A+ G K++A + A + Sbjct: 160 EVMKFVAEGLLNKQVAFKLNISEITVKAHRGQVMRKMNARTLPHLVNMAAKL 211 >gi|90418016|ref|ZP_01225928.1| two component response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337688|gb|EAS51339.1| two component response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 250 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++ +LT R+ G ++++IA LGLS V A++ L Sbjct: 131 LLPRVRAGERPDPQRVSLTARQAEVWNHLAKGASNKQIARSLGLSEGAVKAHVAGLLRLL 190 Query: 217 DAVNRIQAIAKAIRFGY 233 A NR +A+ +A G+ Sbjct: 191 GARNRTEALVRAGAVGW 207 >gi|315608462|ref|ZP_07883450.1| transcriptional regulator [Prevotella buccae ATCC 33574] gi|315249922|gb|EFU29923.1| transcriptional regulator [Prevotella buccae ATCC 33574] Length = 213 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 37/84 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C ++ L + LT+ ET L+ G+T+ EIAE+ S HTVN + Sbjct: 123 FICRRMTEMLLAPRQNEEEERVKLTKTETEVLKEIALGFTTREIAERRFSSFHTVNTHRK 182 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +A A+R G + Sbjct: 183 NLFRKLGVNTVHEATKYALRAGLV 206 >gi|167742175|ref|ZP_02414949.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167914465|ref|ZP_02501556.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] Length = 273 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 45 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 97 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + L + +R + Sbjct: 154 VEVLLRDGGAVLAAFSLLRLACDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268 >gi|153007788|ref|YP_001369003.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559676|gb|ABS13174.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 213 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 4/127 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166 + I+ + G ++ ++ A + V L+ + Sbjct: 85 MLSMHDSREYISTSIMRGASGYVLKDVSTTEIVAAIHAVASGGTYFSSGVSEALLDSGDR 144 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S L+ RE L L +G ++ EIA +LG+S TV + + KL + Sbjct: 145 KS---EGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTR 201 Query: 227 KAIRFGY 233 I Sbjct: 202 YVIENRL 208 >gi|86751663|ref|YP_488159.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574691|gb|ABD09248.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 224 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|94313637|ref|YP_586846.1| Two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357489|gb|ABF11577.1| Two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 264 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE S L+L +G ++ ++ + LS T+ Y S KL N + + AI Sbjct: 154 DLLTARERSVLKLVAEGRSNRQVGIYMNLSPKTIEKYRASLMRKLGITNLTELVLIAISM 213 Query: 232 GYI 234 G I Sbjct: 214 GLI 216 >gi|332663474|ref|YP_004446262.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332288|gb|AEE49389.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 227 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL + YT+ EIAEKL +S TV+ + + KL N + AI++ + Sbjct: 156 TSREKEILQLICEEYTTSEIAEKLFISPRTVDGHRNNLLEKLSCKNVAGLVVYAIQYQLV 215 >gi|317484063|ref|ZP_07942996.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia 3_1_6] gi|316924707|gb|EFV45860.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia 3_1_6] Length = 282 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 SS A +LT +E L+L +G ++++IA KL LSV T++ + S KLD N + Sbjct: 210 ASSKADSLTPKEKMVLKLIAEGNSNKDIAAKLNLSVKTIDTHRTSFMKKLDLHNVREVTR 269 Query: 227 KAIRFGYI 234 A++ G + Sbjct: 270 FAMQNGLV 277 >gi|86159176|ref|YP_465961.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775687|gb|ABC82524.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 215 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V+ +R+ L++RE LQL G+T ++A LG++ TV Y+ Sbjct: 129 RAAKVLLQEFRGDPPDQRAKDGPALSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYV 188 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 K+D + +A A+ G + Sbjct: 189 KRIYEKMDVSTKAEAALLAVARGLV 213 >gi|258588733|pdb|3IX3|A Chain A, Lasr-Oc12 Hsl Complex gi|258588734|pdb|3IX3|B Chain B, Lasr-Oc12 Hsl Complex gi|258588735|pdb|3IX4|A Chain A, Lasr-Tp1 Complex gi|258588736|pdb|3IX4|B Chain B, Lasr-Tp1 Complex gi|258588737|pdb|3IX4|C Chain C, Lasr-Tp1 Complex gi|258588738|pdb|3IX4|D Chain D, Lasr-Tp1 Complex gi|258588739|pdb|3IX4|E Chain E, Lasr-Tp1 Complex gi|258588740|pdb|3IX4|F Chain F, Lasr-Tp1 Complex gi|258588741|pdb|3IX4|G Chain G, Lasr-Tp1 Complex gi|258588742|pdb|3IX4|H Chain H, Lasr-Tp1 Complex gi|258588743|pdb|3IX8|A Chain A, Lasr-Tp3 Complex gi|258588744|pdb|3IX8|B Chain B, Lasr-Tp3 Complex gi|258588745|pdb|3IX8|C Chain C, Lasr-Tp3 Complex gi|258588746|pdb|3IX8|D Chain D, Lasr-Tp3 Complex gi|261278836|pdb|3JPU|A Chain A, Lasr-Tp4 Complex gi|261278837|pdb|3JPU|B Chain B, Lasr-Tp4 Complex gi|261278838|pdb|3JPU|C Chain C, Lasr-Tp4 Complex gi|261278839|pdb|3JPU|D Chain D, Lasr-Tp4 Complex gi|261278840|pdb|3JPU|E Chain E, Lasr-Tp4 Complex Length = 173 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 11/174 (6%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L ++SS E S L + + + + + + NY Sbjct: 3 LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + D + H +LPI W + G+ Sbjct: 60 WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 P+ + G + + + E EA+ V+ L + L Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGL 165 >gi|308235093|ref|ZP_07665830.1| transcriptional regulator, LuxR family protein [Gardnerella vaginalis ATCC 14018] gi|311115228|ref|YP_003986449.1| hypothetical protein HMPREF0421_21344 [Gardnerella vaginalis ATCC 14019] gi|310946722|gb|ADP39426.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 246 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 F+ L K RS + L +E + L GYT+ +IA +LGL +T+N ++ KL Sbjct: 145 ESFIRLSKSRSRSV--LPPQELKIMDLLAKGYTTNQIASQLGLMPNTINTHIHRIYKKLH 202 Query: 218 AVNRIQAI 225 NR+QAI Sbjct: 203 VSNRVQAI 210 >gi|226364726|ref|YP_002782508.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243215|dbj|BAH53563.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 230 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 15/207 (7%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 + S L R++ + D ++P+ + E D L + I + +V Sbjct: 17 VRSGLRRILRRKDGFVIVGECADGSEVPDAVAEHTPDVVLMDLRMKRVDGIEATRALRSV 76 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--- 154 L + +G L G+++ S L V A G Sbjct: 77 AAPPPVLVLTTFDDDDLLSG-----SLRAGAAGFILKDSPAEDLIRAVRTVAEGGACLDP 131 Query: 155 QVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 V L ++ + + LT RE L L G G+++ EI +LG+S TV + Sbjct: 132 AVTGRVLATYRTVAPSTDGERNRLTELTARELDVLALIGRGHSNSEIGRELGISGVTVKS 191 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++G +KLD +R AI A G + Sbjct: 192 HVGHIFLKLDLRDRAAAIVYAFDHGIV 218 >gi|225872721|ref|YP_002754178.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794134|gb|ACO34224.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 203 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + +VI L S LTERE L AG+G S++IA Sbjct: 107 DRPAAELADAVRRVHQGLRVIDPQLAADAWESGP-DPLTERERQILWRAGEGKASQDIAA 165 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV YL A KL A NR+ A A G++ Sbjct: 166 ELHLSEGTVRNYLSEAISKLGAANRVDAARIARSKGWL 203 >gi|223940647|ref|ZP_03632489.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223890693|gb|EEF57212.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 243 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +VI F K + A L+ RE L+L GY+++ IA+KL LS+ TV ++L Sbjct: 154 IARRVIESFRRKAKNPNEYAH-LSMREEQILRLLSQGYSNKLIADKLELSIDTVCSHLKR 212 Query: 212 ATVKLDAVNRIQAIAKAIR 230 KL +R +A+ + + Sbjct: 213 VFEKLHVSSRTEAVVRYME 231 >gi|313675451|ref|YP_004053447.1| two component transcriptional regulator, luxr family [Marivirga tractuosa DSM 4126] gi|312942149|gb|ADR21339.1| two component transcriptional regulator, LuxR family [Marivirga tractuosa DSM 4126] Length = 213 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE +QL G T++EIA+K+ LSV T+ + + KL+ N IA A Sbjct: 153 KLSRREIEIIQLLKKGLTNQEIADKIFLSVLTIQTHRKNIIQKLEVNNSAGLIAFAHEHN 212 Query: 233 Y 233 Sbjct: 213 I 213 >gi|289208492|ref|YP_003460558.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288944123|gb|ADC71822.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp. K90mix] Length = 204 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 148 EAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + + + NLT RE G ++EIA +LG++ TV Sbjct: 113 DLMTRMIRTVRSAQPRDPETPPEGFENLTPREREVALAVTTGAHNKEIARQLGMTERTVK 172 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231 +LGS KL+ +R+Q + R Sbjct: 173 MHLGSVFKKLNVDDRVQLVLHLTRL 197 >gi|94314741|ref|YP_587950.1| LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358593|gb|ABF12681.1| Transcriptional regulator, LuxR family, ATP-dependent [Cupriavidus metallidurans CH34] Length = 914 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + ++ A LT RE LQ+ G+ + IAEK+ +S T+ ++L KL A +R +A+ Sbjct: 845 RGAAIAEPLTTREQEVLQMLAAGHRNRVIAEKMFVSELTIKSHLRKINAKLGAQSRTEAV 904 Query: 226 AKAIRFGYI 234 A G + Sbjct: 905 AIGRSLGLL 913 >gi|329945873|ref|ZP_08293560.1| putative oxygen regulatory protein NreC [Actinomyces sp. oral taxon 170 str. F0386] gi|328528321|gb|EGF55299.1| putative oxygen regulatory protein NreC [Actinomyces sp. oral taxon 170 str. F0386] Length = 237 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E A +L +SV TV ++ + KL NR + A+ Sbjct: 175 DRLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVAR 234 Query: 232 GYI 234 + Sbjct: 235 RIV 237 >gi|331694132|ref|YP_004330371.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326948821|gb|AEA22518.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 524 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 8/104 (7%) Query: 139 LMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 A + ++ A A V+ ++R + L+ RE L L G + Sbjct: 415 EPAAAQTLLRADAAAGRLDGEAVNAVLAAAGHRVRRRPALPAGLSPREAQVLGLVARGLS 474 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + IA +L L+ TV +++ K+ R A A+R G + Sbjct: 475 NRAIAAELSLAPRTVGSHVEHVYTKIGVSTRGAAAMFAMRHGLV 518 >gi|325527140|gb|EGD04544.1| two-component regulatory system response regulator protein [Burkholderia sp. TJI49] Length = 184 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 68 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 127 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 128 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 181 >gi|269128529|ref|YP_003301899.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313487|gb|ACY99861.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 160 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V +V L + V + + D ++ +++A LT RE Sbjct: 43 VDRDDPDRDFVEAARAVLAGSGWVSPQLAPRMLATLRDGIDSAAGLTASATALTAREQDV 102 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L G T+ EIA +L ++V TV ++ + K+ +R Q IA A+ G Sbjct: 103 ARLMSSGLTNSEIARELQVAVSTVKFHVSNVLRKMGCRDRAQLIA-ALHRG 152 >gi|121535101|ref|ZP_01666918.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] gi|121306351|gb|EAX47276.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] Length = 190 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ GY+ EIA+ L +SV TV+ + KL + Q + A++ G Sbjct: 124 LSFREREVLKYMVRGYSLSEIAKMLCISVKTVDTHKTRIMNKLGYTEKSQLVEYALKHGL 183 Query: 234 I 234 + Sbjct: 184 L 184 >gi|194364036|ref|YP_002026646.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194346840|gb|ACF49963.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 200 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 E + +A Q I +L S A LT+RE L+LAG+G T+ EIAE+L Sbjct: 105 DAPAENLADALRKVKQGIRAIDPQLALDAWSQADPLTDRERRVLRLAGEGRTASEIAEQL 164 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GLS TV YL KL NRI+A A + G++ Sbjct: 165 GLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|114706025|ref|ZP_01438928.1| two-component response regulator [Fulvimarina pelagi HTCC2506] gi|114538871|gb|EAU41992.1| two-component response regulator [Fulvimarina pelagi HTCC2506] Length = 223 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++ +G ++ IA +L +S TV Y+ KL+A NR++ + +A R G Sbjct: 151 LSLREEQIIRFLSEGLPNKTIAIRLNISEKTVKHYMTGLIQKLEARNRLEVVMRAQRMGL 210 Query: 234 I 234 + Sbjct: 211 L 211 >gi|76819404|ref|YP_337615.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|124382862|ref|YP_001024446.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|167819353|ref|ZP_02451033.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167922362|ref|ZP_02509453.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217419136|ref|ZP_03450643.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|238561397|ref|ZP_00442049.2| transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254174619|ref|ZP_04881281.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254189951|ref|ZP_04896460.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254200827|ref|ZP_04907192.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254204796|ref|ZP_04911149.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254263076|ref|ZP_04953941.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254300219|ref|ZP_04967665.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254357045|ref|ZP_04973320.1| transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|76583877|gb|ABA53351.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|124290882|gb|ABN00152.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] gi|147748439|gb|EDK55514.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147754382|gb|EDK61446.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148026072|gb|EDK84195.1| transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|157810043|gb|EDO87213.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937628|gb|EDO93298.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160695665|gb|EDP85635.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|217398440|gb|EEC38455.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|238524614|gb|EEP88046.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254214078|gb|EET03463.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 273 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 45 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 97 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + L + +R + Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268 >gi|53726081|ref|YP_103403.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121601196|ref|YP_992504.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124385129|ref|YP_001026695.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126450323|ref|YP_001080022.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|167000332|ref|ZP_02266150.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254175606|ref|ZP_04882266.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254202076|ref|ZP_04908439.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254207407|ref|ZP_04913757.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254359829|ref|ZP_04976099.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52429504|gb|AAU50097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121230006|gb|ABM52524.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124293149|gb|ABN02418.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126243193|gb|ABO06286.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147746323|gb|EDK53400.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147751301|gb|EDK58368.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148029069|gb|EDK86974.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|160696650|gb|EDP86620.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|243063667|gb|EES45853.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 279 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ + L G L + P L V+ Sbjct: 63 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRTLEMVLLGG 119 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 120 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217 >gi|311900038|dbj|BAJ32446.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 214 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA + A G L + + +L+ RE LQL Sbjct: 101 AGATGYLLKDAPPEDLAAAIHATARGETVLAPPVAARLLGRVRAGRPSLSPREAEILQLL 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +G + +I+++L +S TV +L KL +R Sbjct: 161 AEGLPNRQISKRLFISEATVKTHLVHIYDKLGVDSRT 197 >gi|289641751|ref|ZP_06473909.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508395|gb|EFD29336.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 422 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+ DG T+ IA +L +S TV ++ KL A NR +A+++ Sbjct: 344 PLTRREIEVLRHMADGATNARIATRLMVSEGTVKVHVKHILRKLGATNRAEAVSR 398 >gi|228990002|ref|ZP_04149975.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228769668|gb|EEM18258.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 201 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGAC----YQVITDFLELFKKRSSAARN 173 + + +GYV + L A + +++ + + L+ + + Sbjct: 78 VTLIMNAGASGYVPKAAVDEELYTAIDSVMDGYLYLRPKEISTMLKRLQNETESRNPYVI 137 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ G++ EIA++L +S+ TV+ + KL+ + + + AI++ Sbjct: 138 LSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRMLNKLNLSKKSELVQYAIKYNL 197 Query: 234 I 234 I Sbjct: 198 I 198 >gi|227819439|ref|YP_002823410.1| two-component system response regulator [Sinorhizobium fredii NGR234] gi|227338438|gb|ACP22657.1| putative two-component system response regulator [Sinorhizobium fredii NGR234] Length = 226 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 37/79 (46%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 I + +R S + LT RE +LA +G S EIA +LG++ TV +L S Sbjct: 145 AAIERIGKRDVERRSVMQKLTPRELEISRLAAEGLRSREIAARLGITPGTVKLHLHSVYS 204 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KLD R++ + R Sbjct: 205 KLDITTRVELANISQRLQL 223 >gi|162148610|ref|YP_001603071.1| LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787187|emb|CAP56780.1| putative transcriptional Regulator, LuxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 298 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 32/234 (13%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTIN-SALDFPRRQQLICELHNYDLDSGDIPN 66 +S+++ +L L I +A +F ++ L R +L + + D P Sbjct: 75 ISESTTISQLERILERIIETFRALSFNYTLVDSFDLSQAVRNRLHLDAGAALHELLDEPP 134 Query: 67 -ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L D + L + V Sbjct: 135 YELSSARRDPSYK------------------------PPFLPQVHRLGEIDLVHLSVSTF 170 Query: 126 FHKNGYVIFT-SEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARN-LTERET 179 + G + + + ++ + + + L + ++ L +RE Sbjct: 171 LGECGDIKMAWGQDIARSSRELQRDIRDLVTISLHLHDATLCILGGATAPRDRYLPKREA 230 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 CL LA G+ E A++L +S V YL +A L A N QA+A+A+ G Sbjct: 231 ECLYLASMGFQGRETAKELHISEAAVRLYLTNARRHLAARNTTQAVARALVRGL 284 >gi|311745433|ref|ZP_07719218.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] gi|126577983|gb|EAZ82203.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] Length = 208 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE ++L DG ++EIA+ L LSV T+ + + KL +RI+ + K Sbjct: 148 KLSRREVQIIKLIKDGMQNKEIADDLSLSVQTIETHRKNIHSKLHVSSRIELVNKVQDMN 207 Query: 233 Y 233 Sbjct: 208 L 208 >gi|90425528|ref|YP_533898.1| response regulator FixJ [Rhodopseudomonas palustris BisB18] gi|90107542|gb|ABD89579.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 205 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + ++ L+ RE + G +++ IA + +S T+ Y + K+ A + Sbjct: 131 AIAPEIAARIETLSPRERQVMDGLVAGLSNKVIAREFDISPRTIEVYRANVMTKMQAGSL 190 Query: 222 IQAIAKAIRFG 232 + + AIR G Sbjct: 191 SELVRMAIRGG 201 >gi|302206769|gb|ADL11111.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis C231] gi|308277014|gb|ADO26913.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis I19] Length = 208 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L G T++EIA +L +S+ TV ++ +LD NR++ A R G Sbjct: 145 PLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRVEIAAALWRSG 204 >gi|239813574|ref|YP_002942484.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239800151|gb|ACS17218.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 227 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTER+ LQL G ++ I LG+S TV +L + L+ NR +A+ A Sbjct: 164 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAAQAL 221 >gi|30316455|gb|AAP31397.1| hypothetical two-components response regulator protein [Pseudomonas putida] Length = 217 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT R+ L+L G T++EIA+ L +S TV ++ S L +R A K Sbjct: 156 AVEQLTHRQQEVLRLIAQGKTNKEIAKALSISPFTVRIHVSSLLKLLGVSSRTAAAVK 213 >gi|307292632|ref|ZP_07572478.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306880698|gb|EFN11914.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 212 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 1/105 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDG 188 G V F S+ L+ A + +LT + L +G Sbjct: 104 GAVGFLSKDSDLSVIETAIARALSGHRLPPAPPRPEDAVQKEVASLTPTQLKVLLEVLNG 163 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++IA L +S TV A++ + KLD NR QA A G Sbjct: 164 KLNKQIAHDLMMSEATVKAHMTAIMRKLDVQNRTQAALVARSLGL 208 >gi|300788195|ref|YP_003768486.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797709|gb|ADJ48084.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 5/128 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKK 166 + AG G V ++ +L+ +D E + Sbjct: 91 IRALRAGAAGFLVKSTPPEDLIGLVRVAADGHTVLSPSAARRLVALS----SDSRERGED 146 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERE L G G ++ +IA +L L+ TV +Y+ VKLD NR QA Sbjct: 147 ARRRTAGLTERERDVLACLGSGLSNADIAARLHLAEATVKSYVSRMLVKLDCANRTQAGL 206 Query: 227 KAIRFGYI 234 A G + Sbjct: 207 LAHEAGLV 214 >gi|294509070|ref|YP_003565959.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM B1551] gi|294352374|gb|ADE72696.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM B1551] Length = 202 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E L L T+ EI+ L +S TV ++ S KLD +R+ A+ K I+ Sbjct: 137 ETLTSAEQKILLLISKDKTNYEISMDLSISKRTVEYHISSIIRKLDVDSRVGAVVKGIKK 196 Query: 232 GYI 234 G I Sbjct: 197 GLI 199 >gi|163755753|ref|ZP_02162871.1| phosphoglyceromutase [Kordia algicida OT-1] gi|161324274|gb|EDP95605.1| phosphoglyceromutase [Kordia algicida OT-1] Length = 225 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L T++EI E+L ++ TV + + +K +A N + AI+ Y Sbjct: 157 LTEREIEVLKLICFQKTAKEIGEQLFITPRTVEGHKSNLFIKTEARNIAGLVIYAIQNNY 216 Query: 234 I 234 I Sbjct: 217 I 217 >gi|197123919|ref|YP_002135870.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220918688|ref|YP_002493992.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196173768|gb|ACG74741.1| transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219956542|gb|ACL66926.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 178 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ A LT+RE L DG S E+AE+LG++ TV ++L + KL NR++ Sbjct: 111 ETPTATPADGLTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVE 170 Query: 224 AIAKAIRF 231 + ++ Sbjct: 171 LARRLVQH 178 >gi|120401374|ref|YP_951203.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119954192|gb|ABM11197.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] Length = 392 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE L G +++EIA++L ++ TV +++ K AVNR QAIA A+ Sbjct: 330 PPVTLTEREADVFDLMVTGASNQEIADRLVITEGTVKSHVKHILRKYGAVNRAQAIAWAL 389 Query: 230 RFG 232 G Sbjct: 390 NGG 392 >gi|91789053|ref|YP_550005.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91698278|gb|ABE45107.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 895 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A+ + + A + + + + + LT RE L L +G + EIAE+L Sbjct: 792 RPAADGLRRQLRAAGLRGLPRGMRPSTQTNP--HQLTAREIEVLLLLCEGLKNSEIAERL 849 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 SV TV+ +L + KL +R +A+A A+ G Sbjct: 850 CRSVRTVDHHLAAVFTKLGVASRTEAVAAALHAGI 884 >gi|327405216|ref|YP_004346054.1| LuxR family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320724|gb|AEA45216.1| transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 259 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R SA LTERE L+L G T +IA+K+ ++ TV Y +L N ++A+A Sbjct: 192 RKSAKPTLTEREIEILRLHAQGLTINQIADKIFVAPDTVKYYRRRIFERLSVTNIVEALA 251 Query: 227 KAIRFGYI 234 A+ I Sbjct: 252 YAVNSKII 259 >gi|309812367|ref|ZP_07706122.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] gi|308433672|gb|EFP57549.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] Length = 237 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 37/82 (45%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V+ A LT RE+ L++ G S++IA +LGLS TV+ ++ + Sbjct: 155 LAGLVLAHLRGRVDTTDDPASALTPRESEVLRMVAKGLASKQIASRLGLSSRTVDNHVAA 214 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL NR++ A+ G Sbjct: 215 TLRKLHLANRVELTRFALENGL 236 >gi|224826787|ref|ZP_03699887.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224601007|gb|EEG07190.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 215 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 34/81 (41%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 L + + LT++E + G++ E+AE+L LS TV +L Sbjct: 133 QLAQQVALAQLGGAADPSEALTDKEFAIFLQLAQGHSVNEVAEELHLSPSTVGTHLYHIK 192 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ N + A+R G I Sbjct: 193 QKLNVQNAAELALIAVRCGLI 213 >gi|119775008|ref|YP_927748.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767508|gb|ABM00079.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 215 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ L + S LT R+ LQL +GY++ +IAE + +S+ TV + Sbjct: 134 ISLLEQLLSTNQSAPSLLELLTNRQKQILQLIAEGYSTRQIAESISVSIKTVETHRAHIM 193 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 +L + + A++ I Sbjct: 194 ARLQIFDIAGLVRFALQEKLI 214 >gi|120600427|ref|YP_965001.1| response regulator receiver protein [Shewanella sp. W3-18-1] gi|120560520|gb|ABM26447.1| two component transcriptional regulator, LuxR family [Shewanella sp. W3-18-1] gi|319424869|gb|ADV52943.1| two component transciptional regulator for thiosulfate/tetrathionate response, TtrR [Shewanella putrefaciens 200] Length = 200 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + L F+K+S LTERE L G T+++I+E + LS+ T+ Sbjct: 111 ALVQAIEKAQCESLATFEKQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170 Query: 206 NAYLGSATVKLDAVNRIQAI 225 + KL+ N + + Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190 >gi|330830262|ref|YP_004393214.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Aeromonas veronii B565] gi|328805398|gb|AEB50597.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Aeromonas veronii B565] Length = 196 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 142 ANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + +I A Q K SS+ LT RE QL G + IAE+LG Sbjct: 104 SPDELIAAVRTAAQGGCYLTPDIAQKLASSSRDPLTNREREIAQLLAQGLEVKAIAEQLG 163 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LS TV+ + + KL N ++ + Sbjct: 164 LSPKTVHVHRANLMDKLKVSNNVELAHR 191 >gi|258653704|ref|YP_003202860.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556929|gb|ACV79871.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 229 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +L+ RE ++L DG +++ I ++L LS TV ++L KL Sbjct: 152 RRANPSAAAIPATIHDLSSREIEVIRLVADGRSNKWIGDQLSLSALTVKSHLARIGRKLG 211 Query: 218 AVNRIQAIAKAIRFGYI 234 +R +A A+R G I Sbjct: 212 TGDRAHMVALAMRAGVI 228 >gi|239941299|ref|ZP_04693236.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987762|ref|ZP_04708426.1| two component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291444739|ref|ZP_06584129.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291347686|gb|EFE74590.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + A +VI +F L ++ A L T RE + L G ++EEI L +S Sbjct: 127 LLAPAVTRRVIEEFARLKAPEAAGAERLAVLTGREREVMALVAAGLSNEEIGRALIMSPL 186 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T ++ KL A +R Q + A G + Sbjct: 187 TAKTHVSRTMTKLGARDRAQLVVMAYETGLV 217 >gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 221 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 19/219 (8%) Query: 14 LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + L ++ + + + + SAL+ +R++ L + + D Sbjct: 16 VDDTPDNLAMLSDALDDAGYMVLVALDGLSALNRVQRRRPDLILLDAMMPGLDGFETCRR 75 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 S +P+++ + +T G + P++ Sbjct: 76 LKAQP-----ASADIPVVFMTGLTDTRHVVQGFEV-------GGSDYVTKPIQTDE---- 119 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + + L + ++ V+T E + SA LTERE L+ G T Sbjct: 120 VLARVAAHLRTSRILLSAREAQQPSVLTLEDEPAHRLLSARFQLTEREVEVLRWVACGKT 179 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + +I + LGLS TVN +L VKL R A + A+ Sbjct: 180 NRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218 >gi|281419799|ref|ZP_06250798.1| transcriptional regulator, LuxR family protein [Prevotella copri DSM 18205] gi|281406175|gb|EFB36855.1| transcriptional regulator, LuxR family protein [Prevotella copri DSM 18205] Length = 209 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 9/160 (5%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH---KNGYVIF 134 + + + + V+E + + + P + + Sbjct: 51 QYEANNPDHFVHSFVSMHIVLEHRYFFTQGNRNRHVI---VLTPSNDPNSQLAEFHCLCV 107 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 L +++ H + + + + L++RE L L G ++EI Sbjct: 108 NVPEGYLIKDLLNLQH--SGHPHGEHIPAMPPVT-QEKVLSDREIEVLSLVAQGKINKEI 164 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++L + + TV + KL + A+ G++ Sbjct: 165 ADQLCIGLTTVITHRKKIQEKLGLKSVSSLTIYAVMHGFV 204 >gi|149203303|ref|ZP_01880273.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149143136|gb|EDM31175.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 240 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT ++ LQL +G +++IA +L ++ TV ++ + KL R QA+ A Sbjct: 173 LTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227 >gi|159043020|ref|YP_001531814.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157910780|gb|ABV92213.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 239 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + LT ++ ++L G ++EIA +L L+ TV A++ + +L A NR Sbjct: 154 AAEFDHPKLAELTPQQQRIMRLICKGKPNKEIAYELSLAEATVKAHITALLRRLGARNRT 213 Query: 223 QAI-----AKAIRFG 232 +A+ A A + G Sbjct: 214 EAVVVVEEAMAAQRG 228 >gi|326330390|ref|ZP_08196699.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|326330395|ref|ZP_08196703.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951670|gb|EGD43702.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951816|gb|EGD43847.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 363 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L G T+ IA +L +S TV +++ KL AVNR QAIA+ Sbjct: 300 TEEPLTSRERDVLELMAVGATNPMIASELVISASTVKSHVRHILRKLGAVNRAQAIAR 357 >gi|239918649|ref|YP_002958207.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415136|ref|ZP_06246878.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839856|gb|ACS31653.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 222 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 39/99 (39%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + V E Q + LT RE + G ++ EIA Sbjct: 120 RGDAVFSPRVARELIETVTQQSERRESAAAHALTELEELTPRELEVVTELAKGSSNAEIA 179 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L L+ TV ++LG K A +R+Q + +A R G + Sbjct: 180 QALFLAEATVKSHLGKIMDKWQARDRVQVLIRASRAGLV 218 >gi|271968550|ref|YP_003342746.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511725|gb|ACZ90003.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 201 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+LA G S EIA++L LSV TV ++ K A NR+ A+ A G Sbjct: 140 PLTRRELDVLRLAAQGARSNEIADQLFLSVGTVRNHMSRIMCKTHARNRLDAVRIASDSG 199 Query: 233 YI 234 ++ Sbjct: 200 WL 201 >gi|254443862|ref|ZP_05057338.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198258170|gb|EDY82478.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIA+ LGLS+ TV ++ + + KL + A+R Sbjct: 156 ETLSDREKQIVVFVASGMTNKEIAQNLGLSIKTVESHRSNISKKLKIFDIAGVTLFAVRT 215 Query: 232 GYI 234 G + Sbjct: 216 GLV 218 >gi|254389329|ref|ZP_05004557.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|197703044|gb|EDY48856.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] Length = 334 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 16/234 (6%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 S + ++ + + + + + ++ A Q + LD Sbjct: 114 SGPVSSVRELRGIDAVQTCVEKACHECR-EEIQVFVPGGA------QPGDVLASSQPLDL 166 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + +Y P + E E + L + Sbjct: 167 LLLERSARVSY---VYQGSIRNDRPTSEYAQWLVEQGAEVRTVPHLPLRVIIWDRRTALV 223 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P+ G + +S + A + + E ++ L ++E++ Sbjct: 224 PIDPAAPDAGAFLLSSPGPVAALQSLFEQVWQRAARFG-----EERDRERDGALADQESA 278 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T E IA KLG+SV T + +L A +R Q A A G++ Sbjct: 279 VLGLLAAGLTDEVIARKLGVSVRTSRRVTAALMNRLGARSRFQLGALAAERGWL 332 >gi|134101976|ref|YP_001107637.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008994|ref|ZP_06566967.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914599|emb|CAM04712.1| transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 943 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 18/129 (13%) Query: 121 PVRLGFHKNGYVIFTSEF------------------LMLANEVIIEAHGACYQVITDFLE 162 PV ++ V+F L + +++ + Sbjct: 797 PVHAQALEDAAVLFARRRDLGAARAAYVEATRIYAELGASWDLLRADARLRPHGMRRLRG 856 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ LT E L DG+++ +IA +L S TV A++ KL +R+ Sbjct: 857 RRANAATGWEALTPAELQVAWLVSDGHSNADIAARLFSSKRTVEAHVSRILAKLGVRSRV 916 Query: 223 QAIAKAIRF 231 + +A R Sbjct: 917 EIAIEATRH 925 >gi|148553426|ref|YP_001261008.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148498616|gb|ABQ66870.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 861 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 10/95 (10%) Query: 150 HGACYQVITDFLELFKK----------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 H + EL ++ R + L+ RE L G +++ AE+L Sbjct: 766 HALGPEASRFLAELSERLGQSYEHVIDRDAGGSYLSAREREILLSLAQGESNKSTAERLN 825 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV +L KL A NR++AIA A + G + Sbjct: 826 VSEATVKFHLQRIYRKLGAHNRVKAIAVAQQQGLL 860 >gi|170725332|ref|YP_001759358.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810679|gb|ACA85263.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 209 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153 L + + V +I ++++E H Sbjct: 69 LNALRQEGVTSRIVILTVSDAKQDVIRIIRAGADGYLLKDTEPDLLLEKLKNAMQGHRVI 128 Query: 154 YQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + ++L K + NLT RE L+ +G ++ I+E L +S TV ++ Sbjct: 129 SESVEEYLYELKDAADEDDWLSNLTPRELQILEQVAEGKSNRMISELLHISEGTVKVHVK 188 Query: 211 SATVKLDAVNRIQAIAK 227 + K A +R + + Sbjct: 189 NLLRKGHAKSRTEMAVR 205 >gi|88797788|ref|ZP_01113376.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Reinekea sp. MED297] gi|88779465|gb|EAR10652.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Reinekea sp. MED297] Length = 211 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL ++R LT R+ + LQ G ++ EIA+ L LS +T+ + KL N Sbjct: 139 RELAERREENID-LTGRQHAILQQMQTGLSTSEIAQALNLSPNTIKTHTRLMYGKLGVSN 197 Query: 221 RIQAIAKAIRFGYI 234 R + + +A G I Sbjct: 198 RTECLNRAAELGLI 211 >gi|332530099|ref|ZP_08406049.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040572|gb|EGI76948.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 224 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE + L+L G++ EIA +SVHTV ++ + KL +R +A+ +A R Sbjct: 158 APALSAREQAVLELIARGFSYAEIARLQEISVHTVQTHIKNLYQKLAVHSRGEAVFEATR 217 Query: 231 FGYI 234 G + Sbjct: 218 MGLL 221 >gi|258625963|ref|ZP_05720829.1| Glycerol metabolism activator [Vibrio mimicus VM603] gi|258581754|gb|EEW06637.1| Glycerol metabolism activator [Vibrio mimicus VM603] Length = 222 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 16/124 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------- 169 + + G + + A I+ + D L K Sbjct: 91 VLQTLAYGAVGYVAKSCARQQMGEAFAQILRGD---VYLPADILRENVKTPPNHSLRNQA 147 Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT ++ LQ G +++IA L +S TV +++ + KL NRIQA Sbjct: 148 GFSAETLQTLTRKQLQVLQSMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQA 207 Query: 225 IAKA 228 + A Sbjct: 208 VLGA 211 >gi|254819266|ref|ZP_05224267.1| regulatory protein, LuxR [Mycobacterium intracellulare ATCC 13950] Length = 1082 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 7/142 (4%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 + + R + +R G +N + +E L+ E Sbjct: 947 ARLLGASAAIRERMGHARFALYREGYDSAVAAIREGLGQNAFDAAWAEGAALSTEE---- 1002 Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 K+ SS +LT E ++L +G ++EI +L +S TV +L Sbjct: 1003 ---AIAYAQRGRGERKRPSSGWESLTPMENDVVRLVREGLGNKEIGARLFISPRTVQTHL 1059 Query: 210 GSATVKLDAVNRIQAIAKAIRF 231 KL +R+Q + +A R Sbjct: 1060 THVYSKLGLTSRVQLVQEAGRR 1081 >gi|253998423|ref|YP_003050486.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200498|ref|YP_004039156.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985102|gb|ACT49959.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312439814|gb|ADQ83920.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 314 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 AG+ P +G +IFT + ++ +I H D L Sbjct: 200 GGIAGLNKPTLTIPQGSGRLIFTLVEIDNDDQWVILLHEESDAAKIDALM-------TTF 252 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE+ L A G T+ +I + LG S T+N +L KL R A A A Sbjct: 253 KLTRRESEVLYWAMQGKTNRDIGDILGTSPRTINKHLEHVFTKLGVETRTAASALAR 309 >gi|228472164|ref|ZP_04056930.1| transcriptional regulator, LuxR family [Capnocytophaga gingivalis ATCC 33624] gi|228276367|gb|EEK15091.1| transcriptional regulator, LuxR family [Capnocytophaga gingivalis ATCC 33624] Length = 216 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 1/151 (0%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + + + +++EE + +R+ I L F + ++ Sbjct: 67 VVRRIDKKVWEFL-DTLREEEKLTYKYIYEMRVLDRGKYVRMIYQMRMLAFKDDNFLGMG 125 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 L +TD + F ++ LT RE L LA +G S+EI+ Sbjct: 126 IIDLAPEQSANTSVRFQIKNCLTDEIVPFAIETATDTLLTPREREILALAKEGMFSKEIS 185 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 EKL +SVHTVN + + KL N I+AI Sbjct: 186 EKLNISVHTVNRHRQNILEKLQVDNMIEAIR 216 >gi|269125139|ref|YP_003298509.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310097|gb|ACY96471.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 266 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 5/218 (2%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 R +Q+ + L AL P Sbjct: 49 ARTTALQDLVVRSGTGLGGKAMALRRPVTVTDYLHAREISHHYDRPVAREGLHAILAVPL 108 Query: 79 HFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + +++ +++ E +L++ L G + A + + Sbjct: 109 LTAGQVTGVLYAGLRQRLEFGERMQRLAMSLAGEVRQRMAAAQ--QPPAVHLRLREACRD 166 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIA 195 + V A A + + L + AA L+ RE L A G + EIA Sbjct: 167 LERVIARVHDPAVRAELEAVRRRLAAETRPAAPPAAGRLSRREHEALSHAAQGLPNAEIA 226 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++GL+ TV AYL S KL NR++A+ +A GY Sbjct: 227 ARMGLTPGTVKAYLRSVMRKLGCRNRMEAVNRARALGY 264 >gi|56460314|ref|YP_155595.1| response regulator [Idiomarina loihiensis L2TR] gi|56179324|gb|AAV82046.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina loihiensis L2TR] Length = 207 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 10/122 (8%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI----------TDFLELFK 165 + F + V+ L + E + + E Sbjct: 76 HIVLFTRPRSISEVRQVLAAGVRSYLPKDSSAEQAKLAIRALLNGDRHIPDDPHLNEPRD 135 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S A L+ R+ +QL G +++EIA LG++ T+ +L + + NR +A Sbjct: 136 KSSGAESFLSPRQLEIMQLLAQGLSNKEIANILGITEGTIRVHLSAIFKAIKVSNRTEAT 195 Query: 226 AK 227 Sbjct: 196 LW 197 >gi|24374189|ref|NP_718232.1| LuxR family DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24348702|gb|AAN55676.1|AE015706_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis MR-1] Length = 220 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205 Query: 225 IA 226 + Sbjct: 206 VI 207 >gi|89075340|ref|ZP_01161762.1| putative transcriptional regulator, LuxR family protein [Photobacterium sp. SKA34] gi|89048889|gb|EAR54458.1| putative transcriptional regulator, LuxR family protein [Photobacterium sp. SKA34] Length = 209 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 G++ +S+ L + + +++ + I D ++ + LT ++ Sbjct: 98 HSHGAFGFIPKSSDMRALISALNQVLDGEPFFPEDIADNNRAYRDLADKIATLTPQQYKV 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L + DG +++IA +L +S T+ A++ + KL+ NR QA+ + Sbjct: 158 LGMLSDGLLNKQIAYELTVSEATIKAHMTAIFRKLEVKNRTQAVILLQQLDL 209 >gi|219669440|ref|YP_002459875.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539700|gb|ACL21439.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 204 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 40/77 (51%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++E + + L + ++A +LT RE Q+ GYT++EIA++L +S +T Sbjct: 119 EVMEGKYRLSEALGSLLFERLVKKNSADDLTAREKIIYQMMRKGYTNKEIAKQLSISTNT 178 Query: 205 VNAYLGSATVKLDAVNR 221 ++ S KL+ +R Sbjct: 179 ARNHVSSIMHKLNISSR 195 >gi|116620395|ref|YP_822551.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223557|gb|ABJ82266.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 200 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + A LT+RE L+ AG+G + EIA L LS TV YL A KL A NR Sbjct: 128 ELAAEAWTEADPLTDRERQVLRHAGEGRSGAEIAGLLNLSEGTVRNYLSEAISKLGAANR 187 Query: 222 IQAIAKAIRFGYI 234 +A A + G++ Sbjct: 188 TEAARIAHQRGWL 200 >gi|22126326|ref|NP_669749.1| response regulator [Yersinia pestis KIM 10] gi|45441347|ref|NP_992886.1| response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51596070|ref|YP_070261.1| response regulator [Yersinia pseudotuberculosis IP 32953] gi|108807239|ref|YP_651155.1| response regulator [Yersinia pestis Antiqua] gi|108812420|ref|YP_648187.1| response regulator [Yersinia pestis Nepal516] gi|145598551|ref|YP_001162627.1| response regulator [Yersinia pestis Pestoides F] gi|149366189|ref|ZP_01888224.1| response regulator protein [Yersinia pestis CA88-4125] gi|153947332|ref|YP_001401222.1| response regulator [Yersinia pseudotuberculosis IP 31758] gi|162420825|ref|YP_001606521.1| response regulator [Yersinia pestis Angola] gi|165925942|ref|ZP_02221774.1| response regulator UvrY [Yersinia pestis biovar Orientalis str. F1991016] gi|165938744|ref|ZP_02227299.1| response regulator UvrY [Yersinia pestis biovar Orientalis str. IP275] gi|166010891|ref|ZP_02231789.1| response regulator UvrY [Yersinia pestis biovar Antiqua str. E1979001] gi|166211175|ref|ZP_02237210.1| response regulator UvrY [Yersinia pestis biovar Antiqua str. B42003004] gi|167401001|ref|ZP_02306504.1| response regulator UvrY [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420257|ref|ZP_02312010.1| response regulator UvrY [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425765|ref|ZP_02317518.1| response regulator UvrY [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024581|ref|YP_001721086.1| response regulator [Yersinia pseudotuberculosis YPIII] gi|186895179|ref|YP_001872291.1| response regulator [Yersinia pseudotuberculosis PB1/+] gi|218928984|ref|YP_002346859.1| response regulator [Yersinia pestis CO92] gi|229896314|ref|ZP_04511484.1| response regulator protein [Yersinia pestis Pestoides A] gi|229897251|ref|ZP_04512407.1| response regulator protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897979|ref|ZP_04513130.1| response regulator protein [Yersinia pestis biovar Orientalis str. India 195] gi|229902791|ref|ZP_04517908.1| response regulator protein [Yersinia pestis Nepal516] gi|270486580|ref|ZP_06203654.1| response regulator UvrY [Yersinia pestis KIM D27] gi|294503977|ref|YP_003568039.1| response regulator [Yersinia pestis Z176003] gi|21959306|gb|AAM86000.1|AE013847_10 putative 2-component transcriptional regulator [Yersinia pestis KIM 10] gi|45436207|gb|AAS61763.1| response regulator protein [Yersinia pestis biovar Microtus str. 91001] gi|51589352|emb|CAH20974.1| response regulator protein [Yersinia pseudotuberculosis IP 32953] gi|108776068|gb|ABG18587.1| response regulator protein [Yersinia pestis Nepal516] gi|108779152|gb|ABG13210.1| response regulator protein [Yersinia pestis Antiqua] gi|115347595|emb|CAL20505.1| response regulator protein [Yersinia pestis CO92] gi|145210247|gb|ABP39654.1| response regulator protein [Yersinia pestis Pestoides F] gi|149292602|gb|EDM42676.1| response regulator protein [Yersinia pestis CA88-4125] gi|152958827|gb|ABS46288.1| response regulator UvrY [Yersinia pseudotuberculosis IP 31758] gi|162353640|gb|ABX87588.1| response regulator UvrY [Yersinia pestis Angola] gi|165913358|gb|EDR31980.1| response regulator UvrY [Yersinia pestis biovar Orientalis str. IP275] gi|165922146|gb|EDR39323.1| response regulator UvrY [Yersinia pestis biovar Orientalis str. F1991016] gi|165990235|gb|EDR42536.1| response regulator UvrY [Yersinia pestis biovar Antiqua str. E1979001] gi|166208355|gb|EDR52835.1| response regulator UvrY [Yersinia pestis biovar Antiqua str. B42003004] gi|166961952|gb|EDR57973.1| response regulator UvrY [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049390|gb|EDR60798.1| response regulator UvrY [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055164|gb|EDR64961.1| response regulator UvrY [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751115|gb|ACA68633.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186698205|gb|ACC88834.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229680238|gb|EEO76337.1| response regulator protein [Yersinia pestis Nepal516] gi|229689020|gb|EEO81085.1| response regulator protein [Yersinia pestis biovar Orientalis str. India 195] gi|229693588|gb|EEO83637.1| response regulator protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701237|gb|EEO89266.1| response regulator protein [Yersinia pestis Pestoides A] gi|262361838|gb|ACY58559.1| response regulator [Yersinia pestis D106004] gi|262366023|gb|ACY62580.1| response regulator [Yersinia pestis D182038] gi|270335084|gb|EFA45861.1| response regulator UvrY [Yersinia pestis KIM D27] gi|294354436|gb|ADE64777.1| response regulator [Yersinia pestis Z176003] gi|320015393|gb|ADV98964.1| response regulator protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 218 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 3/112 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181 G + ++ A ++ I + L + A L+ERE Sbjct: 97 GAGGYLSKGAAPQDVITAIRMVHAGQRYIASDIAQQMALSQLEPPAETPFSCLSERELQI 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + G EI+E+L LS TVN+Y KL+ ++ AIR G Sbjct: 157 MIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208 >gi|330809309|ref|YP_004353771.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377417|gb|AEA68767.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 165 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 36/97 (37%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G F + + A +V+ + A LT R+ L L G Sbjct: 52 GADGFIGKNIDPAGIADAIMAIREGEVVVKYQAENAILDDALSQLTARQRQVLGLIAAGK 111 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 T++EIA LG+S TV ++ S L R A A Sbjct: 112 TNKEIARDLGISPFTVRIHVSSLLKSLGVPTRAAAAA 148 >gi|297203424|ref|ZP_06920821.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297148400|gb|EDY61596.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 32/85 (37%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + T + L +RE G G ++ EIA L +SV TV ++ Sbjct: 132 QLMAHAAGTAADTRRARARERIAALNDREREVAVAVGQGLSNAEIAAALYMSVATVKTHV 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KLD NR+Q A G + Sbjct: 192 SRVLAKLDLNNRVQIALLAYDAGLL 216 >gi|291514716|emb|CBK63926.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Alistipes shahii WAL 8301] Length = 298 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 31/76 (40%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L R+ L+ RE + G T+++IA+ L +S HTV + + KL Sbjct: 209 ERLAAAGPRTVKPEPLSAREKEIIVCVVKGMTNKQIADALCISAHTVITHRRNIAAKLQI 268 Query: 219 VNRIQAIAKAIRFGYI 234 + AI + Sbjct: 269 HSAAGLTIYAIVNKLV 284 >gi|302867758|ref|YP_003836395.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302570617|gb|ADL46819.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 222 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195 ++A + A +++ + + + A L T RE L L ++ EIA Sbjct: 117 RVVARGEALLAPTVTRRLLDRYADRLPAPAPAGDVLAVLTAREREVLTLTARALSNAEIA 176 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV ++ + KL +RIQA+ A G + Sbjct: 177 ARLHLSTATVKTHVSAILTKLGLRDRIQAVVLAYDTGLV 215 >gi|237811617|ref|YP_002896068.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|237503468|gb|ACQ95786.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] Length = 363 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ + L G L + P L V+ Sbjct: 147 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 203 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 204 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 263 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 264 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 301 >gi|168802972|ref|ZP_02827979.1| transcriptional regulator, LuxR family protein [Escherichia coli O157:H7 str. EC508] gi|307314180|ref|ZP_07593790.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|189375230|gb|EDU93646.1| transcriptional regulator, LuxR family protein [Escherichia coli O157:H7 str. EC508] gi|306906149|gb|EFN36667.1| transcriptional regulator, LuxR family [Escherichia coli W] Length = 107 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 30 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 89 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 90 THLAIRHGL 98 >gi|167586004|ref|ZP_02378392.1| two component transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 281 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 80/224 (35%), Gaps = 15/224 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S E L + +I R+ A D P Q L N D I + Sbjct: 7 NSDAERRDGLKALLRQID-RHAAY------NDAPDGFQARRLLRNERFDLVAID--WQDV 57 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 L + P + ++ E+ L G++P + L Sbjct: 58 GRRSELQALCNACSPSPAAVLIDDATPETVRGLFNCGVTGVIPRSTRP---HLIVRAFEM 114 Query: 132 VIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 V+ + +A ++ ++ L R SA R L+ R+ ++ G T Sbjct: 115 VLLGGHYIPPIALNLLPSLLVTRHEAHVQELAGTIPRRSATRVLSPRQAQIMRFVHMGNT 174 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ IA LG+S TV +L S +L A NR A+ AI G++ Sbjct: 175 NKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 216 >gi|241518460|ref|YP_002979088.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862873|gb|ACS60537.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 212 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTE 176 P+ + K G V F ++ + +++A +LE K + + +LT Sbjct: 89 IPMSVKAMKGGAVEFLTK--PFREQDLLDAVHVGLARDRAWLENEKALATVRARFDSLTP 146 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE + L G +++IA LG+S TV + K+ + + A Sbjct: 147 REREVMALVVTGRPNKQIAGDLGVSEITVKVHRSQVMQKMGTRSLPELARMA 198 >gi|153807354|ref|ZP_01960022.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185] gi|149129716|gb|EDM20928.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185] Length = 200 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++EIA+KL +S+ TV + + T KL + A+ GY Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194 Query: 234 I 234 I Sbjct: 195 I 195 >gi|146337183|ref|YP_001202231.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146189989|emb|CAL73981.1| Putative transcriptional regulatory protein,luxR family [Bradyrhizobium sp. ORS278] Length = 255 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 57/209 (27%), Gaps = 10/209 (4%) Query: 22 HLIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 ++ + F A + + Y D + Sbjct: 50 VQLRRFLPFNRFLGAYGRLIGGR----IRMRTLVTSGYPDDFVAGLEESFDLGARGCFAW 105 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 + I + ++ L AG + Y+ F Sbjct: 106 WVQNRTAFILDPADPPPFATARELDEIKQLS-LGVVAGHGV-IDPFASAGTYLSFAGVAA 163 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEK 197 V + + + FL + + LTER+ + LA G + IA + Sbjct: 164 DQPQHVRMCLNLIAPVLHALFLATEQVAAPRLDLGKLTERQRELVDLALMGLPDKTIASR 223 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LG+S HTV + +L R Q IA Sbjct: 224 LGISEHTVGNHFRVIYERLGIKKRSQLIA 252 >gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9605] gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9605] Length = 245 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + ++ L + T RE S LQL +G ++EI Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEAL-PSTEPVVHSFTPREASVLQLVAEGLMNKEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ K +R + + A+ + Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244 >gi|332715487|ref|YP_004442953.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325062172|gb|ADY65862.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 492 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLTERETSCLQLAGDGYTSEE 193 + V+ + V+ L + S++ ++LTERE L L DG + +E Sbjct: 387 IEAIESVMTDTSWFSRTVVERLAGLRQNSRGTTSSASLKDLTEREEQILSLICDGCSDKE 446 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++++L LS HT+ ++ S K+ R A+ A G+ Sbjct: 447 MSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWARERGF 486 >gi|259418825|ref|ZP_05742742.1| response regulator receiver protein [Silicibacter sp. TrichCH4B] gi|259345047|gb|EEW56901.1| response regulator receiver protein [Silicibacter sp. TrichCH4B] Length = 151 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 27/55 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L +G ++ IA +LGLS HTV ++ KL NR +A Sbjct: 85 RLTTREAQVLSCVAEGKQNKLIANRLGLSEHTVKLHIHHVIAKLGVNNRTEAAVW 139 >gi|163737655|ref|ZP_02145072.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis BS107] gi|163740771|ref|ZP_02148164.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis 2.10] gi|161385762|gb|EDQ10138.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis 2.10] gi|161389181|gb|EDQ13533.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis BS107] Length = 210 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 RS + LT RE L +G TS+EIA LGLS TV + K+ N Sbjct: 131 ADLSRSRPYQPLTRREREVYSLLCEGKTSKEIARSLGLSYRTVEVHRARLLKKMGVSNTA 190 Query: 223 QA 224 Sbjct: 191 AL 192 >gi|315081981|gb|EFT53957.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] Length = 206 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 8/150 (5%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-------EFLMLANE 144 + E ++ L L + + + Sbjct: 58 LDIEMPGLDGITVAAELRDQALWCRILIVTTFGRPGYLRRAMDAGVAGFLVKDTPAEDLA 117 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++ A + I L + L+ RE L+LA G + IA +L LSV T Sbjct: 118 QVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILRLAESGASISLIASELCLSVGT 176 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ SA K A NR +A A R G++ Sbjct: 177 VRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|312196500|ref|YP_004016561.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227836|gb|ADP80691.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 229 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L L G ++ E+AE LS +TV +Y+ + K+ +R QA+ Sbjct: 148 DWPGRGEGLTEREAEVLALITQGRSNAELAEITCLSPNTVKSYIRTLYRKIGVTSRSQAV 207 Query: 226 AKAIRFGY 233 + G+ Sbjct: 208 LWGVNHGF 215 >gi|297243051|ref|ZP_06926989.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] gi|296889262|gb|EFH27996.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] Length = 217 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ +E+ ++L G +++EIA++L + V TVN +L KL +R+QA+A Sbjct: 151 PKTSVLSPQESEIMRLCKQGSSTKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALA 208 >gi|269793570|ref|YP_003313025.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095755|gb|ACZ20191.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 862 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 10/194 (5%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF-----LFHFNSGLLPIIWQSIQEET 96 +F ++ I L P E G+ L H ++ ++ Sbjct: 659 PEFGWWRRAILTLRTRVSAQLGRPEPCPELLGEPRDAMTALRHADAAVVAAAMGDPTTAA 718 Query: 97 VIESSGQLSVRLEGGLLPFAGIA-----FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + G +G A I + G + S + + G Sbjct: 719 SLVAEGVAIAESQGQAGQKAMIQTAYAEILLAAGEPLEAVNLLRSAREIFDRRDMRLQLG 778 Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + + S LT RE L+L G + EIAE+L LS T ++ Sbjct: 779 RAQAGLARAEAMLARLSEPLGQLTPREREVLELVVAGLKNGEIAERLTLSKRTAENHVSR 838 Query: 212 ATVKLDAVNRIQAI 225 KL +R +A Sbjct: 839 LLRKLGVSSREEAA 852 >gi|255534018|ref|YP_003094390.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255347002|gb|ACU06328.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 252 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + RE ++L G + EIAE L ++V TV + + +K + N + I+K++ Sbjct: 189 PAFSRREMEIIRLIAQGLNNNEIAENLFIAVLTVKKHRKNILMKSNCKNTAELISKSVIQ 248 Query: 232 GYI 234 G I Sbjct: 249 GLI 251 >gi|308235090|ref|ZP_07665827.1| transcriptional regulator, LuxR family protein [Gardnerella vaginalis ATCC 14018] gi|311115225|ref|YP_003986446.1| hypothetical protein HMPREF0421_21341 [Gardnerella vaginalis ATCC 14019] gi|310946719|gb|ADP39423.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 217 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ +E+ ++L G +++EIA++L + V TVN +L KL +R+QA+A Sbjct: 151 PKTSVLSPQESEIMRLCKQGSSTKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALA 208 >gi|218678823|ref|ZP_03526720.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 153 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 39/151 (25%), Gaps = 8/151 (5%) Query: 21 LHLIQNRIKARNFALYTINSALDF--PRRQQLIC---ELHNYDLDSGDIPNILIETYGDD 75 + +++ I F Y + L ++ + I D Sbjct: 1 MTELEHVIHDSGFEYYGLLRHLPQNPAQKNPEPWAAALAGRWPEQWPQIYAAKKYVLIDP 60 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNGYV 132 + + P W+ + + ++ G G FP+ G + Sbjct: 61 MVRYLAHAQRPFGWRESLAAFRKDGQQRRMEQMMVDAFGHGLEDGYIFPIHGRNGILGSL 120 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + + L+ I + LEL Sbjct: 121 SLAGKPVELSPMEIALFEAVARKSFWRLLEL 151 >gi|192289348|ref|YP_001989953.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192283097|gb|ACE99477.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 225 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|146312147|ref|YP_001177221.1| response regulator [Enterobacter sp. 638] gi|145319023|gb|ABP61170.1| two component transcriptional regulator, LuxR family [Enterobacter sp. 638] Length = 218 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 EKTGSPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|161519735|ref|YP_001583162.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189354086|ref|YP_001949713.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] gi|221197639|ref|ZP_03570686.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221204312|ref|ZP_03577330.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2] gi|160343785|gb|ABX16870.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189338108|dbj|BAG47177.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] gi|221176478|gb|EEE08907.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2] gi|221184193|gb|EEE16593.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 214 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211 >gi|115525914|ref|YP_782825.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519861|gb|ABJ07845.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 210 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 7/99 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G I T + A G +V LT RE L L G Sbjct: 111 RGSEIVTRVEEAIEAFTRRRAQGLAPKV-------PSLNFPGREPLTMREREVLDLFSSG 163 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T++E +LG+S T+ + + KL A N + Sbjct: 164 NTNKEAGRQLGISPRTIEYHRANIMKKLGAKNATDLVRI 202 >gi|312796856|ref|YP_004029778.1| transcriptional regulator, LuxR family [Burkholderia rhizoxinica HKI 454] gi|312168631|emb|CBW75634.1| Transcriptional regulator, LuxR family [Burkholderia rhizoxinica HKI 454] Length = 294 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +++S++ L+ R+ L+L G T++ IA LG+S TV +LG+ KL A N Sbjct: 157 RAACRRQSASPGLLSPRQEQILRLVHMGATNKSIARALGISEGTVKIHLGAIFEKLGATN 216 Query: 221 RIQAIAKAIRFGY 233 R A+ AI G+ Sbjct: 217 RAAAV--AIYNGW 227 >gi|298249678|ref|ZP_06973482.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547682|gb|EFH81549.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1061 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+E+E L+L G ++ EIA +L +SV+TV ++ S +L+ NR++A A Sbjct: 999 EPLSEQEQRVLRLLVAGLSNLEIARELVISVNTVKTHVQSLYRRLNVHNRVEASEVARNL 1058 Query: 232 GYI 234 + Sbjct: 1059 SLL 1061 >gi|239978812|ref|ZP_04701336.1| two-component system response regulator [Streptomyces albus J1074] Length = 213 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + D + A LT+RE L L G T+ EIA +L + TV +++ + Sbjct: 131 RALALAHDPRRAAE--PPWAARLTDREREVLHLMATGLTNAEIAARLTVGPATVKSHVAA 188 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 K +R QA+ A G Sbjct: 189 VLAKTGTRDRTQAVIAAYEAGL 210 >gi|308232152|ref|ZP_07415096.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] gi|308371029|ref|ZP_07423604.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu003] gi|308373427|ref|ZP_07432269.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu005] gi|308374593|ref|ZP_07436663.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu006] gi|308214848|gb|EFO74247.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] gi|308330043|gb|EFP18894.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu003] gi|308337687|gb|EFP26538.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu005] gi|308341368|gb|EFP30219.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu006] Length = 1109 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 1021 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1080 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 1081 YTKLGLSSRLQLAQQAARRG 1100 >gi|92117445|ref|YP_577174.1| response regulator FixJ [Nitrobacter hamburgensis X14] gi|91800339|gb|ABE62714.1| two component transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 205 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + +S +L++RE + G +++ IA + +S T+ Y + K+ Sbjct: 126 HAKSDAISAEIASRIASLSQRERQVMDGLVAGLSNKLIAREHNISPRTIEVYRANVMTKM 185 Query: 217 DAVNRIQAIAKAIRFGYI 234 A N + I A+R G + Sbjct: 186 QAHNLSELIRLALRAGIL 203 >gi|15842015|ref|NP_337052.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|289746269|ref|ZP_06505647.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis 02_1987] gi|308372247|ref|ZP_07427963.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu004] gi|308405230|ref|ZP_07669460.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu012] gi|13882292|gb|AAK46866.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis CDC1551] gi|289686797|gb|EFD54285.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis 02_1987] gi|308333885|gb|EFP22736.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu004] gi|308365275|gb|EFP54126.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu012] gi|323718928|gb|EGB28079.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length = 1113 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 1025 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1084 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 1085 YTKLGLSSRLQLAQQAARRG 1104 >gi|226944315|ref|YP_002799388.1| LuxR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226719242|gb|ACO78413.1| Transcriptional regulator, LuxR family [Azotobacter vinelandii DJ] Length = 188 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 33/73 (45%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ E + AA NLT RE +G T +EI KLG+S TV + Sbjct: 111 RLMVWHFERIDRPIRAAVNLTPREREISAHIVNGLTCKEIGRKLGISHRTVEVHRARLMK 170 Query: 215 KLDAVNRIQAIAK 227 KL A N ++K Sbjct: 171 KLAAKNSADLVSK 183 >gi|296270057|ref|YP_003652689.1| LuxR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092844|gb|ADG88796.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 288 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 5/106 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + + C + L R + L+ RE L L G Sbjct: 187 AHAELRSIAREITDPALRRRIDEVCAR-----LTRPGGRPARPNPLSPRELDVLALVAVG 241 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E A +LG+ TV +YL +A KL +R++ + A R G++ Sbjct: 242 CGNAEAARRLGIGPETVKSYLRNAMRKLGTHSRMETVVAARRAGFL 287 >gi|237713296|ref|ZP_04543777.1| luxR family transcriptional regulator [Bacteroides sp. D1] gi|237718016|ref|ZP_04548497.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4] gi|262406672|ref|ZP_06083221.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22] gi|293369987|ref|ZP_06616554.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|294646076|ref|ZP_06723741.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294810493|ref|ZP_06769146.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|299147711|ref|ZP_07040774.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. 3_1_23] gi|229446535|gb|EEO52326.1| luxR family transcriptional regulator [Bacteroides sp. D1] gi|229452657|gb|EEO58448.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4] gi|262355375|gb|EEZ04466.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22] gi|292634905|gb|EFF53427.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|292638647|gb|EFF57000.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294442257|gb|EFG11071.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|298513894|gb|EFI37780.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. 3_1_23] Length = 200 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L G ++EIA+KL +S+ TV + + T KL + A+ Sbjct: 133 EILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMN 192 Query: 232 GYI 234 GYI Sbjct: 193 GYI 195 >gi|237731960|ref|ZP_04562441.1| response regulator [Citrobacter sp. 30_2] gi|283832686|ref|ZP_06352427.1| response regulator UvrY [Citrobacter youngae ATCC 29220] gi|226907499|gb|EEH93417.1| response regulator [Citrobacter sp. 30_2] gi|291072362|gb|EFE10471.1| response regulator UvrY [Citrobacter youngae ATCC 29220] Length = 218 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 129 IAQQMALSQIEPEKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209 >gi|188591280|ref|YP_001795880.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|170938174|emb|CAP63160.1| putative transcriptional regulator, response receiver CheY domain, HTH LuxR domain [Cupriavidus taiwanensis LMG 19424] Length = 204 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 4/118 (3%) Query: 121 PVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTE 176 PVR L +G+V + V G Q + +L +++ + L+ Sbjct: 86 PVRALRAGAHGFVAKQRGVEDVMQAVRGVLSGYLVFPLQTLETVRQLGEQQQAGLPRLSN 145 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + LQ G++++ IA +L +S TV+ + + KL + ++ + A R + Sbjct: 146 REITILQYLARGHSNKAIAAQLLISSKTVSTHKANIMAKLHVGSLVEMVDYARRHQLV 203 >gi|53718880|ref|YP_107866.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] gi|52209294|emb|CAH35239.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] Length = 302 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ + L G L + P L V+ Sbjct: 86 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 142 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 143 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 202 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 203 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 240 >gi|333025269|ref|ZP_08453333.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332745121|gb|EGJ75562.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 233 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ IAE+LGLS TV AY+ +L NR++A A G Sbjct: 168 LTPREREVLVLLAGGLSNAGIAERLGLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 227 >gi|310826620|ref|YP_003958977.1| salavaricin two-component response regulator [Eubacterium limosum KIST612] gi|308738354|gb|ADO36014.1| salavaricin two-component response regulator [Eubacterium limosum KIST612] Length = 204 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +F + + LT ET LQL +GY + IAE L S T++ ++ KLD + + Sbjct: 126 VFPRANEYIEELTATETKILQLLSEGYKRKAIAEILFSSERTISNHIQHIFDKLDVSSSL 185 Query: 223 QAIAKAIRFGYI 234 +A+ K I+ GYI Sbjct: 186 EAVTKGIKLGYI 197 >gi|308380381|ref|ZP_07669177.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu011] gi|308361672|gb|EFP50523.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu011] Length = 1199 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 1111 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1170 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 1171 YTKLGLSSRLQLAQQAARRG 1190 >gi|256395178|ref|YP_003116742.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361404|gb|ACU74901.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 17/159 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147 + ++ + L +A V VI ++ + Sbjct: 67 LDVHLPGGGGVEVLRQTAPALPDVRFLALSVSDAAEDVIAVIRAGARGYVTKSISGAELA 126 Query: 148 EAHG------------ACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 +A V+ F R LT RE L+ GY +E+ Sbjct: 127 DAVRRVADGDAFFSPRLAGFVLDAFASGGAAARDEELDRLTPREREVLRFIARGYAYKEV 186 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A +L +S+ TV ++ S KL NR + A Sbjct: 187 ARELVISIKTVETHVSSVLRKLQLSNRRELTRWASDRRL 225 >gi|226228852|ref|YP_002762958.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226092043|dbj|BAH40488.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 239 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 32/86 (37%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 V+ S+ LT RE L L G +++ IA +L + TV Sbjct: 146 AAMLLRRLSVLASLTSATNAMSNVVAPLTSREQDILGLLVTGCSNKVIAGELHIQTTTVK 205 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ KL RI+A A+ G Sbjct: 206 NHVHRILEKLGVRTRIEAAARVRSMG 231 >gi|218289394|ref|ZP_03493628.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218240500|gb|EED07681.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 200 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Query: 147 IEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + AH EL L+ RE L+LA G T+ ++A++L LS T Sbjct: 111 LAAHLRSIMAGHRVFDPELMVAAMETDSPLSAREIDVLRLAKRGLTTRQMAKELFLSEGT 170 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V YL A KL R +AI KA G++ Sbjct: 171 VRNYLSGALAKLGCATRQEAIRKADEMGWL 200 >gi|167744316|ref|ZP_02417090.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167924475|ref|ZP_02511566.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] Length = 87 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ + LT +E L+L G +++EIA + + TV +L + KLDA +R A+ Sbjct: 15 PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 74 Query: 226 AKAIRFGYI 234 +A+ G + Sbjct: 75 RRALVLGLL 83 >gi|163737546|ref|ZP_02144963.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] gi|163740818|ref|ZP_02148211.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161385809|gb|EDQ10185.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161389072|gb|EDQ13424.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] Length = 238 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LT ++ LQL G +++IA L ++ TV A++ + KL +R QA Sbjct: 162 QDATGRLATLTNQQARILQLICAGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQA 221 Query: 225 IAKAIR 230 + A Sbjct: 222 VLIAKE 227 >gi|148273853|ref|YP_001223414.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831783|emb|CAN02752.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 222 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 I +T+RE+ L L G +++E+A LS +TV +Y+ Sbjct: 126 LFNEAPIRAASAPSLDWPGKREGITDRESEILALITQGKSNQEVAALTYLSPNTVKSYIR 185 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 S K+ +R QA+ + G+ Sbjct: 186 SIYRKIQVQSRTQAVIWGVGHGF 208 >gi|313835112|gb|EFS72826.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314929089|gb|EFS92920.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970815|gb|EFT14913.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328905840|gb|EGG25616.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 218 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 158 LTDREQEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217 Query: 234 I 234 I Sbjct: 218 I 218 >gi|307294436|ref|ZP_07574280.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306880587|gb|EFN11804.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 219 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q + + ++ LT+RE L G + EIA + GL+ TV +L Sbjct: 128 FVMEQALVHSISAPANEANVLAALTDRELEIAGLIRAGLRNREIAGRCGLTEGTVKVHLH 187 Query: 211 SATVKLDAVNRIQAIAK 227 S KL+ +R + I Sbjct: 188 SIFQKLNIKSRSELIIM 204 >gi|260591671|ref|ZP_05857129.1| transcriptional regulator, LuxR family domain protein [Prevotella veroralis F0319] gi|260536471|gb|EEX19088.1| transcriptional regulator, LuxR family domain protein [Prevotella veroralis F0319] Length = 349 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIA L +S +TV + + KL + AI Sbjct: 280 EVLSDREKDVIVSVAQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 339 Query: 232 GYI 234 + Sbjct: 340 NLV 342 >gi|260466536|ref|ZP_05812725.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029685|gb|EEW30972.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 517 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 87/255 (34%), Gaps = 32/255 (12%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + E LTG+++ + E L + +Y D ++ + Sbjct: 265 LIEEFLTGERA--VAEAERVLAALLVTR------IYDTARLGDRMWSERSQHFHETWRTL 316 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-----IESSGQLSVRLEGGL--- 112 G ++ +G+ + F+ + + + + G +E Sbjct: 317 VGRHGGRCVDIHGEMMISRFDGPGRALRCAAALRDAAQQIGVASAQGAHVGEIETRGPPI 376 Query: 113 LPFAGIAFPVRLGFHK-------------NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + + + G + E ++ + + E + Sbjct: 377 GLTGRVTIQLAAHAGRGDILASRLVADLAVGSGLHFVEAGRVSIDELDEPLALVLAMSEQ 436 Query: 160 FLELFKK---RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LE + +++ +LT RE+ + L DG ++ IA +L LS HTV ++ + +KL Sbjct: 437 HLEPACRPKVKAAEPASLTVRESEVVNLIADGKSNAAIAAELRLSEHTVKRHVANILLKL 496 Query: 217 DAVNRIQAIAKAIRF 231 D +R A A ++R Sbjct: 497 DLPSRAAAAAFSVRH 511 >gi|227503679|ref|ZP_03933728.1| two-component system response regulator [Corynebacterium accolens ATCC 49725] gi|227075715|gb|EEI13678.1| two-component system response regulator [Corynebacterium accolens ATCC 49725] Length = 205 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E + EA + D + + LT RE +L G TS E+A K Sbjct: 109 DTPPEQLAEAIRRVKAGLRVIDPALARESLFTPDNPLTPREREIARLLLSGVTSSELARK 168 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + LS +V + S K DA NR +A KA G+I Sbjct: 169 VHLSPGSVRNVVSSIMTKTDANNRYEAATKAQTQGWI 205 >gi|289424205|ref|ZP_06425988.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289426652|ref|ZP_06428381.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129970|ref|YP_003580633.1| putative Two-component system response regulator [Propionibacterium acnes SK137] gi|289154902|gb|EFD03584.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289160147|gb|EFD08322.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291375832|gb|ADD99686.1| putative Two-component system response regulator [Propionibacterium acnes SK137] gi|313765489|gb|EFS36853.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772962|gb|EFS38928.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793016|gb|EFS41083.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313802535|gb|EFS43757.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806550|gb|EFS45057.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811098|gb|EFS48812.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814401|gb|EFS52115.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815108|gb|EFS52822.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817418|gb|EFS55132.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821840|gb|EFS59554.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824266|gb|EFS61980.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826630|gb|EFS64344.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313828631|gb|EFS66345.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831864|gb|EFS69578.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834594|gb|EFS72308.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314917145|gb|EFS80976.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921419|gb|EFS85250.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926746|gb|EFS90577.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931258|gb|EFS95089.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314954919|gb|EFS99325.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958851|gb|EFT02953.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961142|gb|EFT05243.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964432|gb|EFT08532.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969529|gb|EFT13627.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974595|gb|EFT18690.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977213|gb|EFT21308.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314980470|gb|EFT24564.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314985689|gb|EFT29781.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314987215|gb|EFT31306.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314988893|gb|EFT32984.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078555|gb|EFT50586.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082523|gb|EFT54499.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086234|gb|EFT58210.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315087817|gb|EFT59793.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315097430|gb|EFT69406.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099881|gb|EFT71857.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101810|gb|EFT73786.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315110233|gb|EFT82209.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327331484|gb|EGE73223.1| DNA-binding response regulator [Propionibacterium acnes HL096PA2] gi|327333470|gb|EGE75190.1| DNA-binding response regulator [Propionibacterium acnes HL096PA3] gi|327445507|gb|EGE92161.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327447125|gb|EGE93779.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449840|gb|EGE96494.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327454686|gb|EGF01341.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456761|gb|EGF03416.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327456969|gb|EGF03624.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328756522|gb|EGF70138.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328758750|gb|EGF72366.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328761756|gb|EGF75270.1| DNA-binding response regulator [Propionibacterium acnes HL099PA1] gi|332674812|gb|AEE71628.1| two-component system response regulator [Propionibacterium acnes 266] Length = 206 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G F + ++ A + I L + L+ RE L+ Sbjct: 97 RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|261404151|ref|YP_003240392.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280614|gb|ACX62585.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 201 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE ++LA G ++I +L LS TV Y+ A KL A RI+AI A G Sbjct: 139 PLSPREREVMKLAAQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKG 198 Query: 233 YI 234 ++ Sbjct: 199 WL 200 >gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 237 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F I + ++ L + T RE+S LQL +G ++EI Sbjct: 138 AARFADADMGQIAKQITEIRSLLAQAEAL-PAQEPVQHTFTPRESSVLQLVAEGLMNKEI 196 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ +K +R + + A++ + Sbjct: 197 ARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRLV 236 >gi|56476411|ref|YP_158000.1| LuxR family transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56312454|emb|CAI07099.1| putative LuxR-family transcriptional regulator [Aromatoleum aromaticum EbN1] Length = 207 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R NL+ RE+ + G +++EIA KLG++ TV A+LG+ KL +R+Q Sbjct: 134 PGRGPLPANLSARESEVARETAAGLSNKEIASKLGITERTVKAHLGAIFDKLGVRDRLQL 193 Query: 225 IAK 227 + + Sbjct: 194 VLR 196 >gi|37524129|ref|NP_927473.1| hypothetical protein plu0103 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783552|emb|CAE12398.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 208 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 140 MLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + +++IE A +V +++++ + L+ERE +++ +G TS++IA Sbjct: 108 PIDADLLIETVSSALLFHQKVFRQ-RQIYEQLKTKFSQLSEREREVMKIILEGKTSKQIA 166 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++L LS T+ + + KLD + Q + Sbjct: 167 QQLSLSPRTIEVHRANIFHKLDIHSLPQLV 196 >gi|330503759|ref|YP_004380628.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918045|gb|AEB58876.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina NK-01] Length = 89 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L L + ++ NL+ RE S +L G +++IAE L ++V TV +L K + Sbjct: 20 LRLEE-WIASHANLSRREISVARLVAQGNCNKKIAEALSITVATVKTHLVHIFEKTGVQS 78 Query: 221 RIQAIAK 227 R + IA+ Sbjct: 79 RAELIAR 85 >gi|330809485|ref|YP_004353947.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377593|gb|AEA68943.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 223 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 161 LELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + S LT ++ L+ G ++++IA L ++ TV A++ + KL+ Sbjct: 142 RRLNENPSFPPELLQALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLN 201 Query: 218 AVNRIQAIAKA 228 NR+QAI A Sbjct: 202 VHNRVQAILSA 212 >gi|323959451|gb|EGB55108.1| luxR family protein regulatory protein [Escherichia coli H489] Length = 200 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 5/94 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193 + + FL + + +L+ + L + G +++E Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSAHQREILTMLAAGESNKE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195 >gi|313840174|gb|EFS77888.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] Length = 206 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G F + ++ A + I L + L+ RE L+ Sbjct: 97 RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|300785664|ref|YP_003765955.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795178|gb|ADJ45553.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 345 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 1/160 (0%) Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + + L + +++E L + + Sbjct: 174 AERDEFVRFQRASLTAEQAARSLAAVYEFDVRDELGAIEVPTLVLHRRDDRAIPFALGQD 233 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V +V + + A + + S L+ERE Sbjct: 234 VAARIPGAAFVPLDGTDHLPWRGDVAGLVRAVREFLGAGRAARGAGSLRHE-LSERELDV 292 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+L G + +EIA +LG+S HT + ++ + KL +R Sbjct: 293 LRLVAHGLSDQEIARRLGISAHTAHRHVSNIRGKLGVSSR 332 >gi|297156465|gb|ADI06177.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 255 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + L +RE G+G ++ EI+ L +SV TV ++ KLD NR Sbjct: 182 ARQERARALLDQLNDREREVAVAVGEGKSNAEISAGLFMSVATVKTHVSRILTKLDLNNR 241 Query: 222 IQAIAKAIRFGYI 234 +Q A G + Sbjct: 242 VQIALLAHDAGLL 254 >gi|262377214|ref|ZP_06070439.1| two-component system response regulator protein [Acinetobacter lwoffii SH145] gi|262307952|gb|EEY89090.1| two-component system response regulator protein [Acinetobacter lwoffii SH145] Length = 216 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 135 FDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 195 GVQNRTQAV 203 >gi|94263624|ref|ZP_01287434.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93456044|gb|EAT06195.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 218 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G ++ EI +S +TV +++ K NR+ A+ G Sbjct: 154 GLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213 Query: 233 Y 233 Y Sbjct: 214 Y 214 >gi|51598137|ref|YP_072328.1| two-component system response regulator [Yersinia pseudotuberculosis IP 32953] gi|108810090|ref|YP_654006.1| two-component system response regulator [Yersinia pestis Antiqua] gi|108813820|ref|YP_649587.1| two-component system response regulator [Yersinia pestis Nepal516] gi|145600624|ref|YP_001164700.1| two-component system response regulator [Yersinia pestis Pestoides F] gi|150261036|ref|ZP_01917764.1| two-component system response regulator [Yersinia pestis CA88-4125] gi|153950690|ref|YP_001403024.1| UhpA family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162421103|ref|YP_001608412.1| two-component system response regulator [Yersinia pestis Angola] gi|165927024|ref|ZP_02222856.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Orientalis str. F1991016] gi|165936885|ref|ZP_02225451.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Orientalis str. IP275] gi|166009570|ref|ZP_02230468.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Antiqua str. E1979001] gi|166213158|ref|ZP_02239193.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401674|ref|ZP_02307168.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421104|ref|ZP_02312857.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425636|ref|ZP_02317389.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466901|ref|ZP_02331605.1| response regulator [Yersinia pestis FV-1] gi|186897358|ref|YP_001874470.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218931003|ref|YP_002348878.1| two-component system response regulator [Yersinia pestis CO92] gi|229836409|ref|ZP_04456576.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Yersinia pestis Pestoides A] gi|229839715|ref|ZP_04459874.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841799|ref|ZP_04461955.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Yersinia pestis biovar Orientalis str. India 195] gi|229904334|ref|ZP_04519445.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Yersinia pestis Nepal516] gi|270488274|ref|ZP_06205348.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|51591419|emb|CAH23085.1| two-component system response regulator [Yersinia pseudotuberculosis IP 32953] gi|108777468|gb|ABG19987.1| two-component system response regulator [Yersinia pestis Nepal516] gi|108782003|gb|ABG16061.1| two-component system response regulator [Yersinia pestis Antiqua] gi|115349614|emb|CAL22590.1| two-component system response regulator [Yersinia pestis CO92] gi|145212320|gb|ABP41727.1| two-component system response regulator [Yersinia pestis Pestoides F] gi|149290444|gb|EDM40521.1| two-component system response regulator [Yersinia pestis CA88-4125] gi|152962185|gb|ABS49646.1| transcriptional regulatory protein UhpA [Yersinia pseudotuberculosis IP 31758] gi|162353918|gb|ABX87866.1| transcriptional regulatory protein UhpA [Yersinia pestis Angola] gi|165915127|gb|EDR33738.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Orientalis str. IP275] gi|165921130|gb|EDR38354.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991492|gb|EDR43793.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Antiqua str. E1979001] gi|166205456|gb|EDR49936.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961233|gb|EDR57254.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049056|gb|EDR60464.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055326|gb|EDR65120.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700384|gb|ACC91013.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229678452|gb|EEO74557.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Yersinia pestis Nepal516] gi|229691138|gb|EEO83191.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Yersinia pestis biovar Orientalis str. India 195] gi|229696081|gb|EEO86128.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706477|gb|EEO92484.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Yersinia pestis Pestoides A] gi|262363713|gb|ACY60434.1| two-component system response regulator [Yersinia pestis D106004] gi|262367647|gb|ACY64204.1| two-component system response regulator [Yersinia pestis D182038] gi|270336778|gb|EFA47555.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|320017338|gb|ADW00910.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 196 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT RE L +G EIAE LGLS TV+ + + KL N ++ K Sbjct: 135 AVDPLTRREREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 192 >gi|319941648|ref|ZP_08015972.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis 3_1_45B] gi|319804878|gb|EFW01732.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis 3_1_45B] Length = 207 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 40/88 (45%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +IEA A + + LT+RE +++ GY+++E+A + G+S T Sbjct: 117 DVIEAAVARNKANRRDQAEVADFKARLEQLTQREREVIRMVAQGYSNKEVAAEFGISEKT 176 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232 V + GSA KL+ N + + G Sbjct: 177 VQVHRGSAYRKLELHNAAEIARLLLLSG 204 >gi|303246143|ref|ZP_07332424.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302492539|gb|EFL52410.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 216 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 28/73 (38%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E + L+ RE +L DG + IA L +S TV + + KL A Sbjct: 142 ETAGDDEARLALLSRREMEVFRLLADGLALKRIAATLCISPKTVETHKYNIMEKLAAETP 201 Query: 222 IQAIAKAIRFGYI 234 A+R G I Sbjct: 202 ADLTKIALRHGLI 214 >gi|326445925|ref|ZP_08220659.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] Length = 330 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 16/234 (6%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 S + ++ + + + + + ++ A Q + LD Sbjct: 110 SGPVSSVRELRGIDAVQTCVEKACHECR-EEIQVFVPGGA------QPGDVLASSQPLDL 162 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + +Y P + E E + L + Sbjct: 163 LLLERSARVSY---VYQGSIRNDRPTSEYAQWLVEQGAEVRTVPHLPLRVIIWDRRTALV 219 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P+ G + +S + A + + E ++ L ++E++ Sbjct: 220 PIDPAAPDAGAFLLSSPGPVAALQSLFEQVWQRAARFG-----EERDRERDGALADQESA 274 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T E IA KLG+SV T + +L A +R Q A A G++ Sbjct: 275 VLGLLAAGLTDEVIARKLGVSVRTSRRVTAALMNRLGARSRFQLGALAAERGWL 328 >gi|291326201|ref|ZP_06123556.2| nitrate/nitrite response regulator protein NarL [Providencia rettgeri DSM 1131] gi|291315361|gb|EFE55814.1| nitrate/nitrite response regulator protein NarL [Providencia rettgeri DSM 1131] Length = 212 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + I L + +LT RE+ L G + EI+ L +S TV ++ Sbjct: 130 QLVFSEKIYQHLISRHNYNDPLSSLTRRESEILHEMAVGLKNREISNLLFISEETVKVHI 189 Query: 210 GSATVKLDAVNRIQA 224 + KL +R++A Sbjct: 190 RNILKKLRVRSRLEA 204 >gi|297202407|ref|ZP_06919804.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197710072|gb|EDY54106.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 213 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + LT RE L G+G ++ +IAE+L ++ TV ++ Sbjct: 131 RLIAEFAARPVRGTSVDPAVLDTLTRREREVLSCLGEGLSNADIAERLDMAEATVKTHVS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFG 232 KL+ +R+QA A G Sbjct: 191 RLLGKLELRSRVQAAVLAQELG 212 >gi|148252434|ref|YP_001237019.1| two component LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404607|gb|ABQ33113.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 224 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L + LT ++ L + G +++IA +LG+S T+ A++ + Sbjct: 136 LAAGADPEMTRLRDRLV----TLTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSA 191 Query: 212 ATVKLDAVNRIQAIAKAIR 230 KL +R QA+ A + Sbjct: 192 ILQKLGVESRTQAVIAAAK 210 >gi|133757303|ref|YP_001096222.1| hypothetical protein pLEW279a_p23 [Corynebacterium sp. L2-79-05] gi|110084187|gb|ABG49341.1| hypothetical protein [Corynebacterium sp. L2-79-05] Length = 221 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G T+ EIA+ L L+ TV ++ + K +A NR++A A+R Sbjct: 159 ERLTAREREILIRLSQGETNAEIAKALHLAPGTVKVHVSAILRKTEARNRVEAALIALRA 218 Query: 232 G 232 G Sbjct: 219 G 219 >gi|4217959|gb|AAD12186.1| putative DNA binding protein TutB1 [Thauera aromatica] Length = 227 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 144 EVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + +++A A +T+ ++R+ L++RE L G +S+EIA+ LG+ Sbjct: 115 QDLLDAVNAALAFSKEMTNKQREKQERADLLAALSQREMEILDKVVCGNSSKEIAKLLGI 174 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 S TV A+ G KL + I A+R Sbjct: 175 SHKTVEAHRGRIMSKLGLRSTGDLIHFAMR 204 >gi|54025695|ref|YP_119937.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017203|dbj|BAD58573.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 231 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L+L G G+++ EIA +L L+ TV ++ S A NR++A A+ Sbjct: 160 LTPREQEILRLVGRGWSNAEIAAELHLAPGTVKVHVSSILRTTGARNRVEAALVAV 215 >gi|53713956|ref|YP_099948.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60682160|ref|YP_212304.1| putative DNA-binding response regulator [Bacteroides fragilis NCTC 9343] gi|253567050|ref|ZP_04844501.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|265764304|ref|ZP_06092872.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|52216821|dbj|BAD49414.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60493594|emb|CAH08383.1| putative DNA-binding response regulator [Bacteroides fragilis NCTC 9343] gi|251944174|gb|EES84683.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|263256912|gb|EEZ28258.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|301163639|emb|CBW23192.1| putative DNA-binding response regulator [Bacteroides fragilis 638R] Length = 202 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL++RE + G T++EIAEKL LS+HTV + + + KL + AI Sbjct: 132 ENLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVN 191 Query: 232 GYI 234 + Sbjct: 192 KLV 194 >gi|331699969|ref|YP_004336208.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954658|gb|AEA28355.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 542 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 3/107 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + A E+ + RS+ L+ RE L+L Sbjct: 436 ALALLGDEESAAAELTAARNAFAELGAGPAEQEAAELLGRSAVPGGLSPRELEVLRLVAA 495 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA +L ++ TV +L + VKLD +R A A A + Sbjct: 496 GRSNAEIAAELVIAEKTVARHLSNMFVKLDVGSRTAAAAFAFEHRLL 542 >gi|320094339|ref|ZP_08026127.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978727|gb|EFW10282.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 254 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 RS+ +LT+RE ++ G + E AE+L +S TV ++ S K NR Q Sbjct: 186 DPRSTVFASLTDREYEVVEAVAAGLDNAETAERLFMSEGTVRNHISSILAKTGLRNRTQV 245 Query: 225 IAKAIRFG 232 + R G Sbjct: 246 AVRYYRAG 253 >gi|289642992|ref|ZP_06475125.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507214|gb|EFD28180.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 216 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 37/83 (44%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ + + S L+ERE L+L G+T+ E+AE L LSV TV Y Sbjct: 133 LGAALLGRDTNVEGRSVSTVAGLSEREAEILRLLALGHTNPEMAEVLDLSVRTVETYRYR 192 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 K+ +R + + A G + Sbjct: 193 LQQKVGLRSRAELVRLAREMGLV 215 >gi|254429735|ref|ZP_05043442.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] gi|196195904|gb|EDX90863.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] Length = 848 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G V LT +E +L G ++ +I+E G+SV T +L Sbjct: 768 GLFPAVFNATPASDPLEVDPDSVLTPKENEIFELLQSGMSNAQISECTGVSVTTTKWHLK 827 Query: 211 SATVKLDAVNRIQAIAKA 228 + KL NR +A+ +A Sbjct: 828 NIYSKLGVSNRTEAVLRA 845 >gi|167624392|ref|YP_001674686.1| LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354414|gb|ABZ77027.1| transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 211 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 30/57 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE LQ+ G T+ IA KL +S T+ +L A K+ +R QAIA A Sbjct: 146 ETLTIREREVLQVLRSGSTNIAIANKLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202 >gi|52426340|ref|YP_089477.1| CitB protein [Mannheimia succiniciproducens MBEL55E] gi|52308392|gb|AAU38892.1| CitB protein [Mannheimia succiniciproducens MBEL55E] Length = 225 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT+RE +L G ++EI E+LGLS TV+A+ +A KLD N ++ Sbjct: 163 PIQQLTKRELEICELLIRGLGAKEIGEQLGLSFKTVHAHRANAMSKLDVKNNVELA 218 >gi|85710358|ref|ZP_01041423.1| putative regulator in two-component regulatory system; LuxR family protein [Erythrobacter sp. NAP1] gi|85689068|gb|EAQ29072.1| putative regulator in two-component regulatory system; LuxR family protein [Erythrobacter sp. NAP1] Length = 211 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +LT + L+ G +++IA +L +S TV A++ + KL NR Q Sbjct: 132 EDDDLARMASLTPAQRRILEAMRKGLLNKQIAYELDVSEATVKAHITAIFRKLGVNNRTQ 191 Query: 224 AIAKA 228 A+ A Sbjct: 192 AVLVA 196 >gi|332883601|gb|EGK03882.1| hypothetical protein HMPREF9456_01423 [Dysgonomonas mossii DSM 22836] Length = 292 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + + L+ERE L+L G ++E+A+KL +S++TV ++ + T KL I Sbjct: 218 RDNKRQPLSERELDVLRLIALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVSGLIF 277 Query: 227 KAIRFGYI 234 I GYI Sbjct: 278 YCITHGYI 285 >gi|239940359|ref|ZP_04692296.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291443791|ref|ZP_06583181.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346738|gb|EFE73642.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 220 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--------RNLT 175 L G+++ + L V + A G L + ++ LT Sbjct: 99 LHAGAAGFLLKRAAAEELVQAVRLVACGDSLLYPAAVRTLAAEHAARRPARAPAWVARLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L G T+ EIA +L + T ++ + K A +R QA+ A G+I Sbjct: 159 DREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESGFI 217 >gi|238760649|ref|ZP_04621775.1| Response regulator uvrY [Yersinia aldovae ATCC 35236] gi|238701138|gb|EEP93729.1| Response regulator uvrY [Yersinia aldovae ATCC 35236] Length = 206 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 3/112 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181 G + ++ A + I + L + A L+ERE Sbjct: 85 GAGGYLSKGAAPQDVVAAIRAVHSGQRYIASDIAQQMALGQLEPPAETPFSCLSERELQI 144 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + G EI+E+L LS TVN+Y KL+ ++ AIR G Sbjct: 145 MLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 196 >gi|237713606|ref|ZP_04544087.1| transcriptional regulator [Bacteroides sp. D1] gi|262406295|ref|ZP_06082844.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643037|ref|ZP_06720877.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294810061|ref|ZP_06768732.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|298482810|ref|ZP_07000993.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] gi|229446328|gb|EEO52119.1| transcriptional regulator [Bacteroides sp. D1] gi|262354998|gb|EEZ04089.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641594|gb|EFF59772.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294442665|gb|EFG11461.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|298271010|gb|EFI12588.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] Length = 203 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIAEKL LS+HTV + + + KL + AI Sbjct: 133 DTLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVN 192 Query: 232 GYI 234 + Sbjct: 193 KLV 195 >gi|13471875|ref|NP_103442.1| hypothetical protein mll1989 [Mesorhizobium loti MAFF303099] gi|14022619|dbj|BAB49228.1| mll1989 [Mesorhizobium loti MAFF303099] Length = 525 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A V++ + ++ A +T RE L+L G T++E+A KL +S T + ++ Sbjct: 435 AAEAVLSFAGQPSRRAGPQALAGMTPREIEVLRLIATGLTAKEVARKLDISPKTADHHIE 494 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S K+ R A A+ G + Sbjct: 495 SVYSKIGVTTRAAAALYAVEHGLV 518 >gi|320162423|ref|YP_004175648.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996277|dbj|BAJ65048.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 220 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + ++ + +L+ERE S L G T+ EI L LS TV ++ Sbjct: 134 RLLHFVREMERKAEQNAFR--DLSERELSVLAELAKGKTNAEIGRTLHLSEKTVRNHVSV 191 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL NR++ A+ Sbjct: 192 ILEKLHLSNRVELATYAVEHHI 213 >gi|315445195|ref|YP_004078074.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1] gi|315263498|gb|ADU00240.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1] Length = 519 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + E ++ A V++ ++ S+ LT RE L L G +++EI Sbjct: 418 ATRLRDRVREGHLD-ELAVDAVLSAAGHAARRVSARPGGLTPREIEVLCLVARGASNKEI 476 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S T ++ K+ A NRI A A+ G I Sbjct: 477 AATLGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516 >gi|315125633|ref|YP_004067636.1| response regulator receiver domain protein (CheY-like) [Pseudoalteromonas sp. SM9913] gi|315014146|gb|ADT67484.1| response regulator receiver domain protein (CheY-like) [Pseudoalteromonas sp. SM9913] Length = 204 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL LT++E L+LA DG + EIA++L +S T YL A KL+A NR Sbjct: 132 ELAINALDDTDPLTDKERKALKLASDGLKTSEIAKQLYISEGTTRNYLSDAIAKLNATNR 191 Query: 222 IQAIAKAIRFGYI 234 I A A + G++ Sbjct: 192 IDAARIARQKGWL 204 >gi|296101738|ref|YP_003611884.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056197|gb|ADF60935.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 218 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 A Q+ +E K S A +L+ERE + + G EI+E+L LS Sbjct: 120 AGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLSP 178 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TVN+Y KL+ ++ AIR G Sbjct: 179 KTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209 >gi|302561891|ref|ZP_07314233.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479509|gb|EFL42602.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L G T+ EIA KL + TV +++ + KL A +R QA+ A G++ Sbjct: 158 TGREGEVLRLMARGLTNAEIAAKLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217 >gi|183598703|ref|ZP_02960196.1| hypothetical protein PROSTU_02115 [Providencia stuartii ATCC 25827] gi|188020894|gb|EDU58934.1| hypothetical protein PROSTU_02115 [Providencia stuartii ATCC 25827] Length = 228 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE + L G +++IA+ L LS TVN Y KL+ + ++ AI + Sbjct: 148 ELLSTRELEIMLLITQGIPTKQIAQVLNLSPKTVNTYRYRMFGKLNIRSDVELTHIAISY 207 Query: 232 GYI 234 G I Sbjct: 208 GLI 210 >gi|163751244|ref|ZP_02158472.1| DNA-binding response regulator, LuxR family protein [Shewanella benthica KT99] gi|161328958|gb|EDQ00032.1| DNA-binding response regulator, LuxR family protein [Shewanella benthica KT99] Length = 219 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H ++ D L ++ + +LT ++ LQ+ +G +++IA LG+S T+ A+ Sbjct: 134 HAEIQEIKEDASALVARKLA---DLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHA 190 Query: 210 GSATVKLDAVNRIQAIA 226 + KL NR QA+ Sbjct: 191 TAIFRKLGVRNRTQAVI 207 >gi|330896102|gb|EGH28323.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 116 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 43 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 102 Query: 224 AIAKAIRF 231 A + Sbjct: 103 AALLLQQL 110 >gi|307700729|ref|ZP_07637754.1| transcriptional regulator, LuxR family [Mobiluncus mulieris FB024-16] gi|307613724|gb|EFN92968.1| transcriptional regulator, LuxR family [Mobiluncus mulieris FB024-16] Length = 189 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K ++ + LT E Q G ++ +IA+ L T+ ++ S K +R + Sbjct: 117 DPKYTAGKQALTPAERDVWQEVLKGKSNAQIAKTLHSQESTIKTHMTSIMQKFQVRSRAE 176 Query: 224 AIAKAIRFGYI 234 + + + G I Sbjct: 177 LLVFSAKNGAI 187 >gi|283834157|ref|ZP_06353898.1| DNA-binding response regulator, LuxR family [Citrobacter youngae ATCC 29220] gi|291070307|gb|EFE08416.1| DNA-binding response regulator, LuxR family [Citrobacter youngae ATCC 29220] Length = 210 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL ++ I A Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIYSKLGLHTIVELIDYAKMHE 208 Query: 233 Y 233 Sbjct: 209 L 209 >gi|182677961|ref|YP_001832107.1| two component LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633844|gb|ACB94618.1| two component transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 309 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 37/79 (46%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ D ++ NLT RE L G ++ +I E LGLS TV+ +L Sbjct: 226 LLLRVMEDNTLSPEQTLKTRLNLTSREAEVLTWVARGKSNRDIGEILGLSPRTVDKHLEQ 285 Query: 212 ATVKLDAVNRIQAIAKAIR 230 K+ NR+ A A AI+ Sbjct: 286 VYAKIGVENRVAATALAIQ 304 >gi|134096765|ref|YP_001102426.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005191|ref|ZP_06563164.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909388|emb|CAL99500.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 211 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 37/78 (47%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +V+ + LTERE L+L G+G T+ +IAE+L L+ TV Y+ + Sbjct: 130 ARVLDRLRQSTSPVPDELDALTERERKVLELIGEGLTNRQIAERLFLAEKTVKNYVTAVL 189 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL R QA A R Sbjct: 190 AKLGMERRTQAAAWVARR 207 >gi|126732485|ref|ZP_01748284.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] gi|126707124|gb|EBA06191.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] Length = 235 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +LT ++ L L +G +++IA L ++ TV A++ + KL +R QA Sbjct: 151 DDALARLASLTNQQARILHLICEGKLNKQIAFDLSIAETTVKAHVTAIMRKLGVHSRTQA 210 Query: 225 IAKAIRF 231 + A Sbjct: 211 VLVAQEA 217 >gi|119387463|ref|YP_918497.1| two component LuxR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119378038|gb|ABL72801.1| two component transcriptional regulator, LuxR family [Paracoccus denitrificans PD1222] Length = 160 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 4/93 (4%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNL----TERETSCLQLAGDGYTSEEIAEKLGL 200 + H + L A L + RE L L G G + IA +L + Sbjct: 60 DLDLLHLKIENTLAFAHRLRDGMVPAGEPLDVHLSRREEQVLSLLGQGERTGAIASRLEI 119 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 S HTV+ Y+ KL NR A AI G Sbjct: 120 SEHTVSHYIKELYRKLGINNRADAARMAISLGL 152 >gi|157962859|ref|YP_001502893.1| two component LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847859|gb|ABV88358.1| two component transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 203 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 6/111 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTER 177 G + + Q I L L + L+ER Sbjct: 85 TGHGDVPMAVDAFKNGAFDFFQKPVQGSILAQAIAKGLTNSLEQHLKLTDQALIDTLSER 144 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E QL G T++++A +L +++ T+ + KL N + + A Sbjct: 145 EAQIFQLVIAGNTNKQMANELCVAIRTIEVHRSKLMTKLGVSNLAELVKLA 195 >gi|27525450|emb|CAD56976.1| putative regulatory protein [Citrobacter freundii] Length = 210 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL ++ I A Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIYSKLGLHTIVELIDYAKMHE 208 Query: 233 Y 233 Sbjct: 209 L 209 >gi|327480133|gb|AEA83443.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 216 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + DG +++IA +L +S T+ A++ + KL R Q Sbjct: 143 AKAASAGLASLTPQQFRVLTMVCDGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQ 202 Query: 224 AIAKAIRFG 232 A + G Sbjct: 203 AALLLQQMG 211 >gi|319942475|ref|ZP_08016786.1| hypothetical protein HMPREF9464_02005 [Sutterella wadsworthensis 3_1_45B] gi|319803948|gb|EFW00864.1| hypothetical protein HMPREF9464_02005 [Sutterella wadsworthensis 3_1_45B] Length = 243 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 155 QVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + D L ++ A LT RE L G + EIA+ L ++ TV ++ Sbjct: 135 AALADHLRTRVQKKPAKDPSITQLLTNREYEVLCCVASGLANREIAQVLKITDGTVKVHV 194 Query: 210 GSATVKLDAVNRIQAIAKAIRF 231 KL +R++A A Sbjct: 195 KHLLKKLKFRSRVEAAVWASEH 216 >gi|313897472|ref|ZP_07831015.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312957842|gb|EFR39467.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 210 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 36/75 (48%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D L+ K + + +L ERE +QL G ++E+A+ L LS TV YL S KL Sbjct: 130 LPDLLKQHTKETLCSYDLNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSSLLEKL 189 Query: 217 DAVNRIQAIAKAIRF 231 +R Q + Sbjct: 190 QLRDRTQLAIFYYQN 204 >gi|238784689|ref|ZP_04628693.1| Response regulator uvrY [Yersinia bercovieri ATCC 43970] gi|238714368|gb|EEQ06376.1| Response regulator uvrY [Yersinia bercovieri ATCC 43970] Length = 206 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 3/112 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181 G + ++ A + I + L + A L+ERE Sbjct: 85 GAGGYLSKGAAPQDVVTAIRAVHSGQRYIASDIAQQMALSQLEPPAETPFSCLSERELQI 144 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + G EI+E+L LS TVN+Y KL+ ++ AIR G Sbjct: 145 MLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 196 >gi|124009769|ref|ZP_01694439.1| DNA-binding response regulator, LuxR family [Microscilla marina ATCC 23134] gi|123984274|gb|EAY24623.1| DNA-binding response regulator, LuxR family [Microscilla marina ATCC 23134] Length = 218 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L T+ E+AEKL +S TV + + K A N + A++ Sbjct: 155 ELTKREQEVLELICKELTTPEMAEKLFISNRTVEGHRKNLLEKTGAKNTAGLVVFALKNE 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|58584166|ref|YP_203182.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428760|gb|AAW77797.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 301 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 225 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 283 >gi|76811819|ref|YP_332880.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|76581272|gb|ABA50747.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] Length = 363 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ + L G L + P L V+ Sbjct: 147 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 203 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 204 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 263 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 264 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 301 >gi|54298635|ref|YP_125004.1| transmission activator LetA [Legionella pneumophila str. Paris] gi|148358619|ref|YP_001249826.1| transmission activator LetA [Legionella pneumophila str. Corby] gi|296108291|ref|YP_003619992.1| Legionella transmission activator LetA [Legionella pneumophila 2300/99 Alcoy] gi|53752420|emb|CAH13852.1| Legionella transmission activator LetA [Legionella pneumophila str. Paris] gi|148280392|gb|ABQ54480.1| Legionella transmission activator LetA [Legionella pneumophila str. Corby] gi|295650193|gb|ADG26040.1| Legionella transmission activator LetA [Legionella pneumophila 2300/99 Alcoy] Length = 219 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + + S L+ERE + + G ++IA++L LS T+N Y KL Sbjct: 133 MAINSLQEPQDSPFDLLSEREMQVMLMITSGMNVQDIADRLFLSSKTINGYRYRMFEKLG 192 Query: 218 AVNRIQAIAKAIRFGYI 234 N ++ A++ I Sbjct: 193 IKNDVELTYLAMKHRII 209 >gi|39933929|ref|NP_946205.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39647776|emb|CAE26296.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 225 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|94314633|ref|YP_587842.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358485|gb|ABF12573.1| two component transcriptional regulator, LuxR family (receiver domain) (bvgA-like) [Cupriavidus metallidurans CH34] Length = 210 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT++E +Q+ G +++ I + L +S TV+++ KL ++ I A R Sbjct: 147 QQLTDKEIQIMQMLSKGMSNKAIGDSLFISNKTVSSHKTRIMEKLHVTTLLELIDFARRC 206 Query: 232 GY 233 Sbjct: 207 NI 208 >gi|315644623|ref|ZP_07897755.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315280130|gb|EFU43427.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 201 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE ++LA G ++I +L LS TV Y+ A KL A RI+AI A G Sbjct: 139 PLSPREREVMKLAAQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKG 198 Query: 233 YI 234 ++ Sbjct: 199 WL 200 >gi|300788437|ref|YP_003768728.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797951|gb|ADJ48326.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 8/168 (4%) Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 GD+ + P + + + + + L L I Sbjct: 36 GDEVVAAARE-TKP-DVALLDVQMPGKDGLEAAADLRAALPSCRVIICTTFGRPGYLARA 93 Query: 133 IFTSEFL----MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAG 186 + E ++EA + + D + ++ A LT RE L+ A Sbjct: 94 MAAGAAGFVVKDAPPEQLVEAVRRVHSGLRVVDPALAAESLATGASPLTGRERDVLREAK 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T ++A L LS TV +L +A K A R +A+ A G++ Sbjct: 154 DGSTVADVARALHLSEGTVRNHLSAAIGKTGARTRAEAVRVAEERGWL 201 >gi|283787636|ref|YP_003367501.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282951090|emb|CBG90768.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 197 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 A I V G F S+ E+I H +L Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAIKL 130 Query: 170 AA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT RE + G +EIA LGLS TV+ + + KL N ++ Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMAVKEIAAVLGLSPKTVHVHRANLMEKLGVSNDVELAR 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|229002577|ref|ZP_04160624.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|229003799|ref|ZP_04161608.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228757400|gb|EEM06636.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228758504|gb|EEM07644.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 201 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L+ + + L+ RE LQ G++ EIA++L +S+ TV+ + KL Sbjct: 121 MLKRLQNETESRNPYVILSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRMLNKL 180 Query: 217 DAVNRIQAIAKAIRFGYI 234 + + + + AI++ I Sbjct: 181 NLSKKSELVQYAIKYNLI 198 >gi|226226246|ref|YP_002760352.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089437|dbj|BAH37882.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 206 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 5/111 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLT 175 P + ++G V F +++A EL LT Sbjct: 90 TVPASVQAMRSGAVDF--LEKPADPSALLDAVKRAVARCDAHATKQELLSAVLQRIERLT 147 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RE + G ++ IA +LG+++ TV + G K+DA + + Sbjct: 148 AREREVFEGVARGLPNKSIATELGIALKTVKVHRGRVMTKMDAESVADLVR 198 >gi|110590832|pdb|2AVX|A Chain A, Solution Structure Of E Coli Sdia1-171 Length = 171 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 12/165 (7%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L ++ + +E+ + L +++ + Y++ P + + NY Sbjct: 14 LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D L N ++W Q G+ + L Sbjct: 71 YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125 Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLELFK 165 G++ F E +L++E+ ++ + + + L Sbjct: 126 PERALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLND 170 >gi|23428533|gb|AAL11447.1| putative global response regulation activator GrrA [Serratia plymuthica] Length = 218 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQTETPFSCLSERELQIMLMITKGKKVNEISEQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|254249561|ref|ZP_04942881.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gi|124876062|gb|EAY66052.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] Length = 214 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211 >gi|293396653|ref|ZP_06640929.1| response regulator [Serratia odorifera DSM 4582] gi|291420917|gb|EFE94170.1| response regulator [Serratia odorifera DSM 4582] Length = 235 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 150 MALSQLEPQTETPFNCLSERELQIMLMITKGKKVNEISEQLNLSPKTVNSYRYRMFSKLN 209 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 210 ISGDVELTHLAIRHGL 225 >gi|260774411|ref|ZP_05883325.1| transcriptional regulatory protein UhpA [Vibrio metschnikovii CIP 69.14] gi|260610538|gb|EEX35743.1| transcriptional regulatory protein UhpA [Vibrio metschnikovii CIP 69.14] Length = 117 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 31/69 (44%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I L K S +LT RE QL DG + IA++LGLS TV+ + + KL Sbjct: 41 IASRLVTPKHPISPLASLTPREREVCQLLADGIDVKTIAQQLGLSPKTVHVHRANGMEKL 100 Query: 217 DAVNRIQAI 225 N + Sbjct: 101 GVSNTVALA 109 >gi|269957500|ref|YP_003327289.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306181|gb|ACZ31731.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 223 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G +++EIA L + + TV ++L KL +R+QA+ A + + Sbjct: 157 LTSREQEILLLLAQGMSNDEIARTLVVELSTVKSHLARMLPKLGVRSRLQAVVWAYQNRF 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|302036834|ref|YP_003797156.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|190343248|gb|ACE75636.1| response regulator [Candidatus Nitrospira defluvii] gi|300604898|emb|CBK41231.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 214 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLEL---FKKRSSAARNLTERETS 180 GY+ S L + G + + L L L++RE Sbjct: 96 AGAAGYLSKDSAPNELVQALRKILGGGKFVSAAVAELLALNLESDGEKPLHEQLSDREYQ 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L G + ++IA+ L + V T+N Y K+ N + AI + Sbjct: 156 VMCLIAVGKSLKDIADDLCVGVSTINTYRARILEKMQLKNNTELTHYAIENRLV 209 >gi|134026355|dbj|BAF49408.1| response regulator [Streptomyces halstedii] Length = 217 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 S LT RE L G+G ++ EIA +L ++ TV ++ KL+ Sbjct: 141 APVRPARTPDPSVLDALTRREREVLGCLGEGLSNAEIAVRLSMAEATVKTHVSRLLGKLE 200 Query: 218 AVNRIQAIAKAIRFGYI 234 +R+QA A G + Sbjct: 201 LRSRVQAAVLAQELGVL 217 >gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax borkumensis SK2] Length = 301 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 28/56 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T RE+ L G T+ EIA+ L LS TVN +L KL NR A A I+ Sbjct: 240 THRESQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVENRTAAAAMVIQ 295 >gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 349 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 61/222 (27%), Gaps = 28/222 (12%) Query: 14 LQELSPRLHLIQNRIKARN----FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 LQ + +ARN F +I + P +LI + Sbjct: 142 LQGARRARQEARQAGQARNALDAFGYASITVRMGGPGDGRLIWQTPLARDLLMRYYGTSA 201 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 + L E +E RL L P + F + Sbjct: 202 PQTPEPVLNWLRRHQ-----AEAGREHELEPP-----RLAMELGPRR-LTFRLHRHTGDA 250 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + +I + + + L K LT RE L G Sbjct: 251 GGDGEGAS------DWLIVMREISDDAVIEAMSLSFK-------LTAREAEVLYWVIKGK 297 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +IA LG S TV +L KL R A A+ Sbjct: 298 INRDIAGILGASPATVKKHLEHVYAKLGVETRTAAAGMALNR 339 >gi|118580732|ref|YP_901982.1| LuxR family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503442|gb|ABK99924.1| transcriptional regulator, LuxR family [Pelobacter propionicus DSM 2379] Length = 201 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL+ +E + G T+ EIA +L +S TV ++ + K + R Q + I+ Sbjct: 137 NLSNKEREVVISVSQGLTNREIAARLYISEQTVKTHINNIFKKTNMARRTQLVPLGIKL 195 >gi|270261293|ref|ZP_06189566.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044777|gb|EFA17868.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 218 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQTETPFSCLSERELQIMLMITKGKKVNEISEQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|271967702|ref|YP_003341898.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510877|gb|ACZ89155.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ LT RE L+ A +G EIA++L LS TV YL K+ A R++A+ Sbjct: 135 NARQNPLTTRELEVLKAAAEGAPVREIADRLFLSGGTVRNYLSRILAKIGARTRVEAVTI 194 Query: 228 AIRFGYI 234 A G++ Sbjct: 195 AREAGWL 201 >gi|313792636|gb|EFS40722.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803170|gb|EFS44366.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313829121|gb|EFS66835.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313839557|gb|EFS77271.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314963942|gb|EFT08042.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|315079093|gb|EFT51100.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315081562|gb|EFT53538.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315109751|gb|EFT81727.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327334500|gb|EGE76211.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1] gi|327457479|gb|EGF04134.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] Length = 202 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L +RET L+L DG ++ +IA +L LS TV YL +A KLDA +R A+ +A G Sbjct: 141 PLNDRETEILRLVADGSSTAQIASRLYLSKGTVRNYLSTAMSKLDADSRTAAVTRAREEG 200 Query: 233 YI 234 ++ Sbjct: 201 WL 202 >gi|258653570|ref|YP_003202726.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556795|gb|ACV79737.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 221 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 38/82 (46%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V F R++A LT+RE L L G T+ +IA +L LS TV + + Sbjct: 136 LAARVTRAFAAPDNPRAAAFPQLTDREREVLDLIAAGRTNAQIAAELFLSGKTVRNNVST 195 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL A +R I +A G+ Sbjct: 196 ILSKLQAGDRANVIIRARDAGF 217 >gi|114047165|ref|YP_737715.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113888607|gb|ABI42658.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 220 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205 Query: 225 IA 226 + Sbjct: 206 VI 207 >gi|332142919|ref|YP_004428657.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|332143036|ref|YP_004428774.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552941|gb|AEA99659.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327553058|gb|AEA99776.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 103 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L++RE +G +++ IA +L +S TV + + KL+ +R Sbjct: 28 ARDSVVPINCLSKRELQVAHKIMEGRSNKVIASELFISERTVKFHCANIYKKLNISSRSA 87 Query: 224 AIA 226 IA Sbjct: 88 LIA 90 >gi|255325217|ref|ZP_05366323.1| two-component system response regulator [Corynebacterium tuberculostearicum SK141] gi|311739691|ref|ZP_07713526.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|255297782|gb|EET77093.1| two-component system response regulator [Corynebacterium tuberculostearicum SK141] gi|311305507|gb|EFQ81575.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 247 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L+L GY++ EI+E +S+ TV ++ K + +R+ A+ A+ Sbjct: 176 EDLTPRELDVLKLMALGYSNTEISECEFVSMATVKTHVRHILTKTGSRDRVHAVLYALTH 235 Query: 232 GYI 234 G + Sbjct: 236 GVV 238 >gi|121598084|ref|YP_989961.1| LuxR family transcriptional regulator [Burkholderia mallei SAVP1] gi|121225882|gb|ABM49413.1| transcriptional regulator, LuxR family [Burkholderia mallei SAVP1] Length = 259 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 31 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 82 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 83 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 139 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + L + +R + Sbjct: 140 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 199 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 200 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 254 >gi|330444975|ref|ZP_08308629.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493093|dbj|GAA03126.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 211 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 G++ +S+ L + + +++ I++ + ++ + LT ++ Sbjct: 98 HSHGAFGFIPKSSDMRALISALNQVLDGEPFFPDNISENNQAYRDLADKIATLTPQQYKV 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L + DG +++IA L +S T+ A++ + KLD NR QA+ + Sbjct: 158 LGMLSDGQLNKQIAYDLNVSEATIKAHMTAIFRKLDVKNRTQAVILLQQLDL 209 >gi|288961577|ref|YP_003451887.1| two-component response regulator [Azospirillum sp. B510] gi|288913857|dbj|BAI75343.1| two-component response regulator [Azospirillum sp. B510] Length = 217 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+R+ L +G ++++IA +LGLS TV ++ + L NR QA Sbjct: 157 LTQRQREVLDRLREGKSNKQIAHELGLSEGTVKIHMTAIFKSLGVRNRTQAA 208 >gi|167629282|ref|YP_001679781.1| two-component transcriptional response regulator, putative [Heliobacterium modesticaldum Ice1] gi|167592022|gb|ABZ83770.1| two-component transcriptional response regulator, putative [Heliobacterium modesticaldum Ice1] Length = 464 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + +G TS EIAEK +S++TV +++ + K+ +++ Sbjct: 403 LTEREYEIALMIAEGLTSREIAEKTFISLNTVKSHIKNIYRKIGVSTKVEL 453 >gi|167562212|ref|ZP_02355128.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] gi|167569457|ref|ZP_02362331.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 279 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ E + L G L P L V+ Sbjct: 63 LHALCRACAPTPVAALTDDASPEHAQALFD--AGVLGVIPRSTRP-HLIVRALEMVLLGG 119 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ SA L+ R+ ++ G T++ I Sbjct: 120 HYIPPSALNLTEPAARARDGRVDAIVSQLPRRKRSACSLLSPRQAQIMRFVHMGSTNKMI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217 >gi|86159866|ref|YP_466651.1| LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776377|gb|ABC83214.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 175 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ A LT+RE L DG S E+AE+LG++ TV ++L + KL NR++ Sbjct: 108 EAATATPADGLTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVE 167 Query: 224 AIAKAIRF 231 + ++ Sbjct: 168 LARRLVQH 175 >gi|117920179|ref|YP_869371.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117612511|gb|ABK47965.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 220 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 155 LTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207 >gi|103486489|ref|YP_616050.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976566|gb|ABF52717.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis RB2256] Length = 195 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R+ L L +G +++IA +LGLS T+ + + L AI A+ GY Sbjct: 136 LSPRQREVLLLMAEGLLNKQIAWRLGLSERTIKMHRSALLRSLGVETTADAIRLAVEAGY 195 >gi|310827838|ref|YP_003960195.1| hypothetical protein ELI_2249 [Eubacterium limosum KIST612] gi|308739572|gb|ADO37232.1| hypothetical protein ELI_2249 [Eubacterium limosum KIST612] Length = 206 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A +++ER+ ++ G ++ EI+E L LS TV Y+ + KL+ +R Q Sbjct: 145 AYSISERDLEIIEGVAQGLSNREISETLFLSEGTVRNYISNILDKLELRDRTQLAIF 201 >gi|303238517|ref|ZP_07325051.1| transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593915|gb|EFL63629.1| transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 274 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL---FKKRSSAARNL 174 PV Y+ S ++N ++ + ++ ++ + + + L Sbjct: 145 YCIPVIHKSKIYCYISVISLSNPISNALVGLLELLAINIYSESSQISYSDCEELNLSHKL 204 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TE++ + + + G++ E+IA++L LS+ T+ + KL+A +R+ A+ KA+ Sbjct: 205 TEKQIAIISMIAQGFSDEQIAQELSLSLATIKYHNQLIFKKLNANSRVDAVVKALML 261 >gi|306836048|ref|ZP_07469038.1| DNA-binding response regulator [Corynebacterium accolens ATCC 49726] gi|304568075|gb|EFM43650.1| DNA-binding response regulator [Corynebacterium accolens ATCC 49726] Length = 205 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E + EA + D + + LT RE +L G TS E+A K Sbjct: 109 DTPPEQLAEAIRRVKAGLRVIDPALARESLFTPDNPLTPREREIARLLLSGVTSSELARK 168 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + LS +V + S K DA NR +A KA G+I Sbjct: 169 VHLSPGSVRNVVSSIMTKTDANNRYEAATKAQTQGWI 205 >gi|301383778|ref|ZP_07232196.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] Length = 104 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 42 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 101 Query: 232 GYI 234 G + Sbjct: 102 GLV 104 >gi|260868506|ref|YP_003234908.1| DNA-binding response regulator UvrY in two-component regulatory system with BarA [Escherichia coli O111:H- str. 11128] gi|257764862|dbj|BAI36357.1| DNA-binding response regulator UvrY in two-component regulatory system with BarA [Escherichia coli O111:H- str. 11128] Length = 218 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|222081806|ref|YP_002541171.1| two-component nodulation response regulator protein [Agrobacterium radiobacter K84] gi|221726485|gb|ACM29574.1| two-component nodulation response regulator protein [Agrobacterium radiobacter K84] Length = 204 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 5/116 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTE 176 P+ + K G V F + +++A + L + LT Sbjct: 91 VPMSVRAMKAGAVEF--LLKPFREQDLLDAIRQALEKDRTRLRQDAATTDLRERFATLTA 148 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE + L G +++IA +LGLS TV + G A K+ A + I A G Sbjct: 149 REREVMALVARGRLNKQIAAELGLSEITVKVHRGQAMRKMQAGSVADLIRMADALG 204 >gi|117618012|ref|YP_855113.1| LuxR family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559419|gb|ABK36367.1| transcriptional regulator, LuxR family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 303 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 58/208 (27%), Gaps = 27/208 (12%) Query: 47 RQQLICELHNYDLDSGDIPNILIETY-GDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQL 104 ++ + + + + L + D F+ GL +W Q ++ + Sbjct: 82 QRPVYLYDNLHHQRALLFDRYLTRHFSQDPFMQALEQGLPAGVWTLAQVSRGRLDPEYRH 141 Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI------- 157 G G+ PVR G ++ + L+ + + V Sbjct: 142 HFYQATGWQEEVGLILPVRGGLTLMLFLGRLDKRSSLSRDELARLEALFPLVHSLCRQHW 201 Query: 158 ---TDFLELFKKRSSAAR---------------NLTERETSCLQLAGDGYTSEEIAEKLG 199 L A +LT RE L G +E IA LG Sbjct: 202 REEAALLAQSPMLPGGADLKATVEQAIASVGGASLTRRERQVAGLLLQGLDTEAIAGTLG 261 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + TV + KL +R + Sbjct: 262 IGSGTVKNHRKHLYAKLHLRSRAELFRF 289 >gi|94269857|ref|ZP_01291582.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93451041|gb|EAT02000.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 218 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G ++ EI +S +TV +++ K NR+ A+ G Sbjct: 154 GLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213 Query: 233 Y 233 Y Sbjct: 214 Y 214 >gi|330470665|ref|YP_004408408.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813636|gb|AEB47808.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 338 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + LT RE L G ++ E+A LG+ TV ++ KL +R+ Sbjct: 267 LTGPWAERIATLTAREREVLLAVARGRSNAEVAADLGIGDETVKTHVSEVLRKLGCRDRV 326 Query: 223 QAIAKAIRFGY 233 QA+ G Sbjct: 327 QAVIAVYESGL 337 >gi|319900177|ref|YP_004159905.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] gi|319415208|gb|ADV42319.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] Length = 248 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++R+ + L GY S++IA+KL +SVHTV+ + L+ N A+ A+R Sbjct: 188 LSQRQLEIVSLLAKGYGSKQIADKLCISVHTVSRHRQDILSLLNVTNTAAAVEIALRMNL 247 Query: 234 I 234 I Sbjct: 248 I 248 >gi|312116148|ref|YP_004013744.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311221277|gb|ADP72645.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii ATCC 17100] Length = 224 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 3/120 (2%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 + +P K S L ++ II A G + ++ Sbjct: 101 LYTIYCYPSHDDAEKRLA---GSLRLRRISDEIIRAGGTAMGPEPARKAGAAQTAALVDQ 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L G ++ +A LGLS T+ A+ A +L+ I AI G Sbjct: 158 LSTREREVVGLLASGQPNKGVARILGLSTKTIEAHRARALKRLNVRTTADLIRVAIEAGL 217 >gi|260461884|ref|ZP_05810129.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259032131|gb|EEW33397.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 219 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT ++T L + +G +++IA +LG+S T+ A++ + KL +R QA+ Sbjct: 149 RLQALTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLS 208 Query: 230 RFG 232 + G Sbjct: 209 KIG 211 >gi|255009628|ref|ZP_05281754.1| putative DNA-binding response regulator [Bacteroides fragilis 3_1_12] gi|313147410|ref|ZP_07809603.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313136177|gb|EFR53537.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 202 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++EIAEKL LS+HTV + + + KL + AI Sbjct: 132 EALSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVN 191 Query: 232 GYI 234 + Sbjct: 192 KLV 194 >gi|115377388|ref|ZP_01464593.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|310824785|ref|YP_003957143.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|115365599|gb|EAU64629.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|309397857|gb|ADO75316.1| Response regulator [Stigmatella aurantiaca DW4/3-1] Length = 223 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 156 VITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + +E+ + + L T R+ L+ G + +IA L ++ TV A++ S Sbjct: 139 LFSARVEVSEAVDATGVRLLTPRQFEVLRYISTGADNLKIAACLNITERTVKAHITSIYQ 198 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL NR Q A + G Sbjct: 199 KLKVENRTQMAMLACQLGL 217 >gi|326800940|ref|YP_004318759.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326551704|gb|ADZ80089.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 213 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + LT+RE L + +G T+ +AE L LS TV + + K + N Sbjct: 144 LNELKGPP--QLTKREKQILSMIAEGKTTANMAETLFLSPLTVETHRRNLLQKFEVKNVA 201 Query: 223 QAIAKAIRFGYI 234 + I +A++ + Sbjct: 202 ELIKEALQQRLL 213 >gi|297563514|ref|YP_003682488.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847962|gb|ADH69982.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 995 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 7/221 (3%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 + E RL + + + +A F + E + S E+ Sbjct: 774 NAAEAFFRLRALVHAAPGHGHPTMRLLTAPHFVEAATRMGETE-WARTSLAGYRRWAESV 832 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG--IAFPVRLGFHKNG 130 G + ++ + E++ L + A + F L + Sbjct: 833 GSPSTLALAARGSGLLAAGDEACDHFENALALHRACGDDDVEHARTQLLFGAHLRRARLP 892 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAG 186 + L + A Q + + LT ++ +L Sbjct: 893 GRAREHLYNALESFERFGARLWVRQTRAELRAIGTAERGPDPVSTSELTAQQQQIARLVA 952 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +G T+ E+A + +S TV +L KL+ +R+ Sbjct: 953 EGATNREVAAHMFISPRTVEHHLRGIFRKLNIRSRVDLARL 993 >gi|289575183|ref|ZP_06455410.1| predicted protein [Mycobacterium tuberculosis K85] gi|289539614|gb|EFD44192.1| predicted protein [Mycobacterium tuberculosis K85] Length = 68 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T E L G+G +++EI +L +S TV+++L KL +R+Q +A R G Sbjct: 2 TPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 59 >gi|288958558|ref|YP_003448899.1| two-component response regulator [Azospirillum sp. B510] gi|288910866|dbj|BAI72355.1| two-component response regulator [Azospirillum sp. B510] Length = 213 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A A + +A LT+R+ L+ G ++++IA +LGLS TV + Sbjct: 129 ALTASMDAAPRRRSIEVTDRNAGYGLTQRQREVLECLRLGKSNKQIAYELGLSEGTVKIH 188 Query: 209 LGSATVKLDAVNRIQ 223 + + L NR Q Sbjct: 189 VTAIFKSLGVKNRTQ 203 >gi|312115840|ref|YP_004013436.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311220969|gb|ADP72337.1| two component transcriptional regulator, LuxR family [Rhodomicrobium vannielii ATCC 17100] Length = 226 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ LT ++ L + G G +++IA +L +S TV A++ + KL +R QA+ Sbjct: 151 AARLATLTPQQVRVLSMLGKGLLNKQIAYELSVSEATVKAHVSAILQKLGVDSRTQAVI 209 >gi|268322279|emb|CBH32801.1| putative regulatory gene [Streptomyces sp. C23201NS3] Length = 201 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LTER+ L+LA G EIA +L LS TV YL S T KL+A R+ A+ A Sbjct: 136 SPPPPLTERQLEILRLAAAGDGVPEIAARLHLSPGTVRNYLSSVTTKLNARTRMDAVRIA 195 Query: 229 IRFGYI 234 G++ Sbjct: 196 ADAGWL 201 >gi|239943901|ref|ZP_04695838.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 260 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ RE + L G ++++IA +S TV ++ KL + R +AIA Sbjct: 193 GLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSATRSEAIA 246 >gi|219847184|ref|YP_002461617.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541443|gb|ACL23181.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 219 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 5/109 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + G I + + E + + ++ R LTERE L L Sbjct: 105 ARQYGADIALQKERLNNFEELEDCVLRAIEIAR-----SPTRQRTYEPLTERERQILTLM 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA+ L V V + KL NR A+A+A G + Sbjct: 160 AQGLTESEIADHLCWGVGVVKRDSRAIFDKLQVRNRAHAVARAYDLGIL 208 >gi|110805887|ref|YP_689407.1| response regulator [Shigella flexneri 5 str. 8401] gi|110615435|gb|ABF04102.1| putative 2-component transcriptional regulator [Shigella flexneri 5 str. 8401] gi|323937189|gb|EGB33469.1| response regulator receiver domain-containing protein [Escherichia coli E1520] Length = 206 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 129 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 188 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 189 THLAIRHGL 197 >gi|104783098|ref|YP_609596.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila L48] gi|95112085|emb|CAK16812.1| putative DNA-binding response regulator, LuxR family [Pseudomonas entomophila L48] Length = 216 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT ++ L + +G +++IA +L +S T+ A++ + KL R QA + Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210 >gi|319784914|ref|YP_004144390.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170802|gb|ADV14340.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 908 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q + ++ LT+RE L+ +G ++ +IA L +S TV +L + Sbjct: 819 AAQAMPVATRKLTAPAAEKEQLTQREAELLRYLTEGMSNRDIALALSVSETTVKWHLKNI 878 Query: 213 TVKLDAVNRIQAIAKA 228 KL NR+QA+ A Sbjct: 879 FGKLAVTNRVQAVRAA 894 >gi|152966473|ref|YP_001362257.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360990|gb|ABS03993.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 42/97 (43%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 A E +I + S A L+ERE ++L G T+ E+ + Sbjct: 119 RAAAAGESLISPAITVRLLQRFAAAAPAPDSRAGEMLSERELDVVRLVARGGTNAEVGAE 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S+ TV A+L S KL A NR++ A A G + Sbjct: 179 LFISLGTVKAHLSSVQTKLSARNRVEVAAWAWENGVV 215 >gi|320532105|ref|ZP_08032984.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135680|gb|EFW27749.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 226 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS+A LT+RE ++ +G + E A +L +S TV ++ + KL NR Q Sbjct: 158 RSTAFAALTDREYEVVEAVAEGLDNAEAAARLFVSEGTVRNHISAILAKLGLRNRTQVAV 217 Query: 227 KAIR 230 R Sbjct: 218 MYYR 221 >gi|253798434|ref|YP_003031435.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|289553722|ref|ZP_06442932.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|297635092|ref|ZP_06952872.1| transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN 4207] gi|297732083|ref|ZP_06961201.1| transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN R506] gi|313659419|ref|ZP_07816299.1| transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN V2475] gi|253319937|gb|ACT24540.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|289438354|gb|EFD20847.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|328458202|gb|AEB03625.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 4207] Length = 1137 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128 >gi|240173083|ref|ZP_04751741.1| LuxR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length = 1102 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 8/129 (6%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELF- 164 + + F + ++ + A + I Sbjct: 975 CRRRMGQ---VLFKIHQPDYEASVAGLRDTMGDNDFDAAWAAGATLSAEEAIGYAQRGRG 1031 Query: 165 --KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 K+ SS +LT E ++L +G +++IA +L LS TV A+L KL +R+ Sbjct: 1032 ERKRASSGWESLTPAELDVVRLVREGLGNKDIAGRLFLSPRTVQAHLTHVYTKLGLTSRV 1091 Query: 223 QAIAKAIRF 231 Q +A R Sbjct: 1092 QLAQEAARR 1100 >gi|29828772|ref|NP_823406.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29605877|dbj|BAC69941.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 220 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183 + T L A S R L+ RE L+ Sbjct: 109 AGGVKGYVVTGTRTNLGLPTRPGAAPIGSAAARMHRRPPGAPSHPGGYRELSGREVEVLR 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++ I +GLS TV ++L KL +R +A A+R G I Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|78045671|ref|YP_361846.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034101|emb|CAJ21746.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 210 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F+ + + ERE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 135 RARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 195 RDRTRAVLKAITLRVI 210 >gi|116669051|ref|YP_829984.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116609160|gb|ABK01884.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 208 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 9/149 (6%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 L P + + +L A + F + Sbjct: 43 ALTEQLSPAVVMMDLAMGPGMDGIEAIKQLRRRNARQAVLVFTTYDSDADIVRAVDAGAM 102 Query: 139 L----MLANEVIIEAHGACYQ---VITD--FLELFKKRSSAARNLTERETSCLQLAGDGY 189 A + I A Q V++ LF++ + LT RE L L +G Sbjct: 103 GYLLKDAAPDEIFAAVRGAVQGRSVMSAPVASRLFQQLRNPDEILTPREAELLSLLTEGL 162 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ E+ ++L +S TV +L KL Sbjct: 163 SNRELGQRLFISEATVKTHLAHIYAKLGV 191 >gi|152966610|ref|YP_001362394.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151361127|gb|ABS04130.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 215 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++ G +++IAE + +S TV + A K+ A +R Q ++ A+R G Sbjct: 153 ALTAREREVVEAIVTGLDNQQIAEAMFVSPFTVKTHANRAMSKVGARDRAQLVSMAVRAG 212 Query: 233 Y 233 Sbjct: 213 M 213 >gi|269126233|ref|YP_003299603.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311191|gb|ACY97565.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 956 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 44/164 (26%), Gaps = 8/164 (4%) Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D H P + G AG Sbjct: 784 ETNLALADLARAHALRPTDPAAAAEHAHRAAEVLQDAGHLLDAGRARLRAG---TAHADA 840 Query: 127 HKNG-----YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 F + + + R S L+ RE Sbjct: 841 GDRAKAREQLRAAAEIFRRAGARPLHALALREQRRSGIRVPSGGGRGSGPGGLSPRELEV 900 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L +G T+++IAE+L LS+ TV +L + KL +R+ + Sbjct: 901 ARLVMEGCTNQQIAERLFLSIRTVETHLSNIFAKLGVGSRVAMV 944 >gi|254183317|ref|ZP_04889909.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|184213850|gb|EDU10893.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] Length = 273 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 45 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 97 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + L + +R + Sbjct: 154 VEVLLRDGGAVLAAFSLLRLACDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268 >gi|118589368|ref|ZP_01546774.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118438068|gb|EAV44703.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 227 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT ++ L + +G +++IA +L +S TV A++ + KL +R QA+ A Sbjct: 152 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAA 206 >gi|328947302|ref|YP_004364639.1| LuxR family transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328447626|gb|AEB13342.1| transcriptional regulator, LuxR family [Treponema succinifaciens DSM 2489] Length = 726 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +K + L+ RE +L G + ++IAE+L +S TV ++ KL+ +R++ Sbjct: 661 EEKSEDFMKKLSSREKQIAELMISGKSDKDIAEELFISPGTVASHNKKIFKKLEVHSRVE 720 Query: 224 AIAK 227 + K Sbjct: 721 LMNK 724 >gi|260205795|ref|ZP_05773286.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis K85] gi|289575185|ref|ZP_06455412.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] gi|289539616|gb|EFD44194.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] Length = 1137 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128 >gi|170780916|ref|YP_001709248.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155484|emb|CAQ00593.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 206 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + +L+ RE L+L DG ++ ++A +L ++ TV ++L KL +R Sbjct: 133 RLLARMRAPRVSLSSREIEVLRLVADGASNTDVAARLHITDATVKSHLVHVFSKLGVSSR 192 Query: 222 IQAIAKAIRFGYI 234 A+A A G + Sbjct: 193 TAAVAAAREMGVL 205 >gi|158334732|ref|YP_001515904.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304973|gb|ABW26590.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSA------ARNL 174 L GY++ ++ LA ++ + H I + + L Sbjct: 93 SLQAGALGYLLKSTPASQLAAAIRMLHDGHFQLGPTIAPKVIAQLRPPPLKNEQNHLERL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++RE L L G G ++ EI++ L L+ TV Y+ L +R QA A + Sbjct: 153 SDRELDVLNLIGQGKSNREISQILHLTEGTVKNYVSQLLGSLGVRDRTQAALWAQQ 208 >gi|15609625|ref|NP_217004.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|31793667|ref|NP_856160.1| LuxR family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|148662323|ref|YP_001283846.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148823685|ref|YP_001288439.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis F11] gi|215404423|ref|ZP_03416604.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|306804237|ref|ZP_07440905.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|306808806|ref|ZP_07445474.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu007] gi|306968638|ref|ZP_07481299.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|306972870|ref|ZP_07485531.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] gi|2791528|emb|CAA16065.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|31619260|emb|CAD97376.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|148506475|gb|ABQ74284.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148722212|gb|ABR06837.1| hypothetical transcriptional regulatory protein, luxR-family [Mycobacterium tuberculosis F11] gi|308344853|gb|EFP33704.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu007] gi|308349163|gb|EFP38014.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|308353782|gb|EFP42633.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|308357727|gb|EFP46578.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] Length = 1137 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128 >gi|186687174|ref|YP_001870317.1| two component LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469477|gb|ACC85276.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 210 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 37/76 (48%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V + +S L++RE L+L G G ++EIA++L LS TV Y+ Sbjct: 129 IALKVFSQLKSSQPSPNSYQDLLSKREIGVLKLVGQGRNNQEIAQELHLSEGTVKNYVTQ 188 Query: 212 ATVKLDAVNRIQAIAK 227 KL+ +RIQA Sbjct: 189 ILNKLEMRDRIQAALW 204 >gi|291575304|gb|ADE10229.1| LigR [Actinoplanes liguriensis] Length = 218 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++++T + + S+ + T RE L G ++ EIA++L L+ T+ ++G Sbjct: 136 HRLVTAHRQHPARPSALLDSFTTREREVFDLIVAGASNAEIADRLNLAEVTIKTHVGRVL 195 Query: 214 VKLDAVNRIQAIAKAIRFG 232 K+ +R+ + A R G Sbjct: 196 AKIGVRDRVNVVIWAYRNG 214 >gi|295840294|ref|ZP_06827227.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74] gi|295827900|gb|EFG65696.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74] Length = 231 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + A GA + D + S LT RE L+L + Sbjct: 124 DRDLIEACRAAMRDEPFLYPGATGALIRNYLDRARRGEDLSG-GSPLTPREEEILKLVAE 182 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++S++IA L +SV TV + + KL +R++ AIR G + Sbjct: 183 GHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 229 >gi|294994407|ref|ZP_06800098.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 210] gi|326904100|gb|EGE51033.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis W-148] Length = 1137 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128 >gi|271968535|ref|YP_003342731.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511710|gb|ACZ89988.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 2/133 (1%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + AG + + + V + L Sbjct: 85 FDLDEYAFAGLKAGASGFLLKNALPEELLAAIRNVAAGDAAVSPRITRRLLENFAHQLPT 144 Query: 164 --FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LT RE L G ++ EIA L L+ TV +LG +KL+ +R Sbjct: 145 GGAPASAERLQRLTPREREVLIEVARGLSNTEIAAGLHLAEATVKTHLGRILLKLELRDR 204 Query: 222 IQAIAKAIRFGYI 234 +QA+ A I Sbjct: 205 VQAVVFAYEARLI 217 >gi|256826810|ref|YP_003150769.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582953|gb|ACU94087.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 470 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 30/58 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R R LTERE L+L G + IA+ L +S +TV ++ KLD +R +A Sbjct: 407 RIGRERGLTEREVEVLELLCRGRSKNYIADTLFISENTVRSHARHIYRKLDVHSRQEA 464 >gi|145224867|ref|YP_001135545.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] gi|145217353|gb|ABP46757.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] Length = 519 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + E ++ A V++ ++ S+ LT RE L L G +++EI Sbjct: 418 ATRLRDRVREGHLD-ELAVDAVLSAAGHAARRVSARPGGLTPREIEVLCLVARGASNKEI 476 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S T ++ K+ A NRI A A+ G I Sbjct: 477 AATLGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516 >gi|121638369|ref|YP_978593.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990863|ref|YP_002645550.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121494017|emb|CAL72495.1| Probable transcriptional regulatory protein (luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773976|dbj|BAH26782.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 1137 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128 >gi|89893631|ref|YP_517118.1| hypothetical protein DSY0885 [Desulfitobacterium hafniense Y51] gi|89333079|dbj|BAE82674.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 8/115 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG--------ACYQVITDFLELFKKRSSAARNL 174 L GY+ ++ L + + A G + L +K L Sbjct: 104 FLDAGGCGYLHKSAADTDLIRAIRMAAQGQVFLRPEGLAVLTVQQKLNKKQKHCGGEPVL 163 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 TERET L + GYTS+EI EKL ++ TV+ Y KL+ R Q + AI Sbjct: 164 TERETQVLGMVARGYTSKEIGEKLYIAPSTVDTYRERLIKKLEFTTRAQLVDYAI 218 >gi|83944309|ref|ZP_00956764.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. EE-36] gi|83953350|ref|ZP_00962072.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83842318|gb|EAP81486.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83844853|gb|EAP82735.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. EE-36] Length = 206 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + + L+ERE L+ + +++EIA L L T+ ++ + KLDA NR Sbjct: 136 DPEETDFEKALSERERQVLRGLMEAKSNKEIARDLELQEVTIKLHVKTLCRKLDARNRTD 195 Query: 224 AIAKAIRFGYI 234 A A G+I Sbjct: 196 AAMIARSAGFI 206 >gi|119714214|ref|YP_919356.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119526123|gb|ABL79493.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 567 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 3/107 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARN--LTERETSCL 182 ++ V L + A Q EL K R+ L+ RE L Sbjct: 446 ADRDRGVAVAEARSALQAFDRMGATSEADQAAAFLRELGIKGRTGPRDGAVLSRREQEVL 505 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L +G ++ EIAE+L +SV T ++G+ KL +R +A A A+ Sbjct: 506 GLVVEGLSNAEIAERLFISVKTAGHHVGNILTKLGVRSRTEATAYAL 552 >gi|157283845|ref|YP_001468113.1| two component LuxR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362987|gb|ABS05989.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 241 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE LQL +G +++IA LG+S HTV ++G +L R A A Sbjct: 174 ATGLSGREHEVLQLIAEGLANKQIARSLGISEHTVKVHVGRILRQLGVSGRTAAAVWARE 233 Query: 231 F 231 Sbjct: 234 H 234 >gi|291515940|emb|CBK65150.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Alistipes shahii WAL 8301] Length = 192 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 41/97 (42%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + E + + + + AA+ LTERE L L G ++++A++ Sbjct: 91 DVQTDEERFVRSLMRLQHSVRRPEHALPVQPQAAQPLTEREAEVLTLIAGGLINKQVADR 150 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+ + TV ++ + KL + A+ GY+ Sbjct: 151 LGIGLTTVISHRRNIMEKLGIRTAAGLVVYALAAGYV 187 >gi|224536197|ref|ZP_03676736.1| hypothetical protein BACCELL_01063 [Bacteroides cellulosilyticus DSM 14838] gi|224522181|gb|EEF91286.1| hypothetical protein BACCELL_01063 [Bacteroides cellulosilyticus DSM 14838] Length = 255 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT+RE LQL G S+EIA L +S+HTVN + + KL N I+AI + Sbjct: 190 PRIHLTQRELEILQLIQKGLLSKEIAHNLCISIHTVNIHRQNLLHKLGVQNSIEAINAGL 249 Query: 230 RFGYI 234 + G + Sbjct: 250 KSGIL 254 >gi|167849200|ref|ZP_02474708.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] Length = 273 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 45 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 97 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + L + +R + Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268 >gi|50086430|ref|YP_047940.1| putative two-component response regulator [Acinetobacter sp. ADP1] gi|49532406|emb|CAG70118.1| putative two-component response regulator [Acinetobacter sp. ADP1] Length = 216 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 135 FDPRASDETELAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 195 GVQNRTQAV 203 >gi|329927577|ref|ZP_08281740.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328938366|gb|EGG34756.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 201 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE ++LA G ++I +L LS TV Y+ A KL A RI+AI A G Sbjct: 139 PLSPREREVMKLAAQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKG 198 Query: 233 YI 234 ++ Sbjct: 199 WL 200 >gi|271966300|ref|YP_003340496.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509475|gb|ACZ87753.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 172 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLA 185 + T + + + L + + R LT+RE L L Sbjct: 63 GLHAQLMTQAREAGVLDERQRMAREIHDTLAQGLTGIIPQLRRPVRATLTDREMQVLTLV 122 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ + A KL +S ++ +L KLD R A+ +A R G + Sbjct: 123 ADGASNRQAAAKLFISEASIKTHLLHIYDKLDVRYRAAAVGEAYRRGLL 171 >gi|226357726|ref|YP_002787465.1| transcriptional regulator, LuxR family, sensory transduction protein liaR [Deinococcus deserti VCD115] gi|226319968|gb|ACO47961.1| putative transcriptional regulator, LuxR family, putative sensory transduction protein liaR [Deinococcus deserti VCD115] Length = 210 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE L+L DG + EI +L +SV +V ++ KL A +R QA Sbjct: 142 RTPGVPVELSARELEVLRLIADGLGNREIGMQLEISVSSVKLHVQDLLEKLQASDRTQAA 201 Query: 226 AKAIRFGYI 234 KA+R G + Sbjct: 202 VKALRQGLL 210 >gi|54025004|ref|YP_119246.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016512|dbj|BAD57882.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 218 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 43/96 (44%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A + A ++I F+ LT RE + LA G +++EIAE++ Sbjct: 118 RVAARGDALLAPSITRRLIDRFVTEPLAADVETAGLTTREREAVVLAARGLSNDEIAERM 177 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S T ++ A KL A +R Q + +A G + Sbjct: 178 VISPLTAKTHINRAMTKLHARDRAQLVIRAYESGLV 213 >gi|271499136|ref|YP_003332161.1| LuxR family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270342691|gb|ACZ75456.1| two component transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 196 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ L V A G CY L+L R LT RE + Sbjct: 91 LNAGARGFLSKRCSPDELIAAVRTVAGGGCYLTPDIALKLASGRR---DPLTRRERQVAE 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G + IA +LGLS TV+ + + KL N ++ + Sbjct: 148 KLAQGMAVKTIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191 >gi|227833657|ref|YP_002835364.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262184663|ref|ZP_06044084.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227454673|gb|ACP33426.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 215 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 16/122 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSS----------A 170 L G+++ T E L V A + + + L L + + Sbjct: 94 LHAGAMGFLLKTIEPEGLVLAVRAAATGQQLLSPKALKNLLALKRPEPAPAEPEALEARP 153 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ---AIAK 227 L++RE QL G ++EIA +L +SV TV ++ KL NR+ A+ + Sbjct: 154 LEGLSQRENEVAQLVAQGLDNQEIAGQLYVSVTTVKTHIKHILDKLGGTNRVHIAIAVLE 213 Query: 228 AI 229 A Sbjct: 214 AR 215 >gi|269862236|ref|XP_002650758.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348] gi|220065658|gb|EED43295.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348] Length = 119 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + F + + A +V+ + + +LT R+ L L Sbjct: 1 SRSRPSADGFIGKNVDPAGIAEAILAIREGEVVVKYNPENPLLDPSLASLTARQRQVLGL 60 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G T++EIA++LG+S TV ++ + L R A A Sbjct: 61 VAAGKTNKEIAKQLGISPFTVRIHVSTLLKSLGVPTRAAAAA 102 >gi|167897798|ref|ZP_02485200.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] Length = 273 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S+ + +LQ L + Y I+++ + + EL Sbjct: 45 LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117 D S ++ + +E S Sbjct: 97 MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRQHGVVDV 153 Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170 + +R G + + + L + +R + Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268 >gi|167829868|ref|ZP_02461339.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] Length = 89 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ + LT +E L+L G +++EIA + + TV +L + KLDA +R A+ Sbjct: 17 PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 76 Query: 226 AKAIRFGYI 234 +A+ G + Sbjct: 77 RRALVLGLL 85 >gi|167851367|ref|ZP_02476875.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|254296620|ref|ZP_04964076.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157806503|gb|EDO83673.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] Length = 215 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 99 VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212 >gi|324998336|ref|ZP_08119448.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 224 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTE------ 176 G + L+ A + +G +T + E ++R + Sbjct: 98 GAGGFVLKDTGPDDLVHAVRRLAAGYGLVDHAVTRRVITEFARRRPAPDELPPVPVTPLT 157 Query: 177 -RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE+ ++L G ++ EIA++L + + TV ++LG A K+ A +R+Q + A R G Sbjct: 158 PRESEIVRLLARGMSNAEIADELVVELSTVKSHLGRAMAKIGARDRVQTVVWAYRSGI 215 >gi|269102423|ref|ZP_06155120.1| transcriptional regulator VpsT [Photobacterium damselae subsp. damselae CIP 102761] gi|268162321|gb|EEZ40817.1| transcriptional regulator VpsT [Photobacterium damselae subsp. damselae CIP 102761] Length = 219 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT RE L L +G T+ EIAE L ++ TV +++ + K+D R + Sbjct: 146 DTRLLPTQPLLTRREKQILGLLTEGKTNIEIAETLFVAETTVKSHIYNLYKKIDVKCRKE 205 Query: 224 AIAKAIRF 231 AI K + Sbjct: 206 AIFKVKQL 213 >gi|227498188|ref|ZP_03928359.1| two-component system response regulator [Actinomyces urogenitalis DSM 15434] gi|226832414|gb|EEH64797.1| two-component system response regulator [Actinomyces urogenitalis DSM 15434] Length = 246 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 4/102 (3%) Query: 135 TSEFLMLANEVIIEAHGACYQVI----TDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 T L H A + + + LT RE L+L G + Sbjct: 132 TRRLLAAVRGGASSLHAAPASALHSDPGQVITAEGTPPADLSGLTHREREILRLIALGLS 191 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++E+ ++L LS+ TV ++ K A +R+ + A+R G Sbjct: 192 NQELCDRLWLSMPTVKTHVSHLLAKTGARDRVHLVLTALRCG 233 >gi|329911478|ref|ZP_08275542.1| DNA binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] gi|327545881|gb|EGF30991.1| DNA binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] Length = 214 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + + ++AH + + +F + L+ERE G + +IA Sbjct: 120 RQVASGRMYLDAHVSQRLALQEF----DGAKNPLEILSEREFGVFIQLAKGLSVNQIAVD 175 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S T +L KL A N+ + A+R G I Sbjct: 176 LNISPRTAGTHLYHVKQKLGAGNQAELALIAVRHGLI 212 >gi|291299471|ref|YP_003510749.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568691|gb|ADD41656.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 36/85 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A D + S LTERET L G+G ++ EI ++L LS TV Y Sbjct: 129 AARRMVAASADEQSTRDELRSLVGELTERETEVLARLGEGLSNAEIGKRLYLSEATVKGY 188 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + +KL NR QA A G Sbjct: 189 VSRLLLKLGCDNRTQAGLLARDAGL 213 >gi|218548549|ref|YP_002382340.1| response regulator [Escherichia fergusonii ATCC 35469] gi|218356090|emb|CAQ88707.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia fergusonii ATCC 35469] gi|324113632|gb|EGC07607.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|325496966|gb|EGC94825.1| response regulator [Escherichia fergusonii ECD227] Length = 218 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 129 IAQQMALSQIEPEKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209 >gi|170769412|ref|ZP_02903865.1| response regulator UvrY [Escherichia albertii TW07627] gi|170121736|gb|EDS90667.1| response regulator UvrY [Escherichia albertii TW07627] Length = 218 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|16129861|ref|NP_416424.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli str. K-12 substr. MG1655] gi|24113291|ref|NP_707801.1| response regulator [Shigella flexneri 2a str. 301] gi|30063358|ref|NP_837529.1| response regulator [Shigella flexneri 2a str. 2457T] gi|74311740|ref|YP_310159.1| response regulator [Shigella sonnei Ss046] gi|82543618|ref|YP_407565.1| response regulator [Shigella boydii Sb227] gi|89108749|ref|AP_002529.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli str. K-12 substr. W3110] gi|157156123|ref|YP_001463217.1| response regulator [Escherichia coli E24377A] gi|170081562|ref|YP_001730882.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli str. K-12 substr. DH10B] gi|170683562|ref|YP_001743330.1| response regulator [Escherichia coli SMS-3-5] gi|187731168|ref|YP_001879702.1| response regulator [Shigella boydii CDC 3083-94] gi|188492627|ref|ZP_02999897.1| response regulator UvrY [Escherichia coli 53638] gi|191168291|ref|ZP_03030084.1| response regulator UvrY [Escherichia coli B7A] gi|193066390|ref|ZP_03047438.1| response regulator UvrY [Escherichia coli E22] gi|193071129|ref|ZP_03052053.1| response regulator UvrY [Escherichia coli E110019] gi|194429924|ref|ZP_03062434.1| response regulator UvrY [Escherichia coli B171] gi|194439584|ref|ZP_03071657.1| response regulator UvrY [Escherichia coli 101-1] gi|209919335|ref|YP_002293419.1| response regulator [Escherichia coli SE11] gi|218554497|ref|YP_002387410.1| response regulator [Escherichia coli IAI1] gi|218695520|ref|YP_002403187.1| response regulator [Escherichia coli 55989] gi|238901123|ref|YP_002926919.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli BW2952] gi|253773134|ref|YP_003035965.1| response regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|256017889|ref|ZP_05431754.1| response regulator [Shigella sp. D9] gi|256022428|ref|ZP_05436293.1| response regulator [Escherichia sp. 4_1_40B] gi|260844318|ref|YP_003222096.1| DNA-binding response regulator UvrY in two-component regulatory system with BarA [Escherichia coli O103:H2 str. 12009] gi|293446296|ref|ZP_06662718.1| two-component system [Escherichia coli B088] gi|300818663|ref|ZP_07098871.1| response regulator UvrY [Escherichia coli MS 107-1] gi|300822315|ref|ZP_07102456.1| response regulator UvrY [Escherichia coli MS 119-7] gi|300917355|ref|ZP_07134024.1| response regulator UvrY [Escherichia coli MS 115-1] gi|300925005|ref|ZP_07140929.1| response regulator UvrY [Escherichia coli MS 182-1] gi|301029364|ref|ZP_07192461.1| response regulator UvrY [Escherichia coli MS 196-1] gi|301327703|ref|ZP_07220909.1| response regulator UvrY [Escherichia coli MS 78-1] gi|301645569|ref|ZP_07245498.1| response regulator UvrY [Escherichia coli MS 146-1] gi|307138580|ref|ZP_07497936.1| response regulator [Escherichia coli H736] gi|309795977|ref|ZP_07690390.1| response regulator UvrY [Escherichia coli MS 145-7] gi|312973876|ref|ZP_07788048.1| response regulator [Escherichia coli 1827-70] gi|331642535|ref|ZP_08343670.1| response regulator UvrY [Escherichia coli H736] gi|331653320|ref|ZP_08354325.1| response regulator UvrY [Escherichia coli M718] gi|331668607|ref|ZP_08369455.1| response regulator UvrY [Escherichia coli TA271] gi|331677798|ref|ZP_08378473.1| response regulator UvrY [Escherichia coli H591] gi|331683465|ref|ZP_08384066.1| response regulator UvrY [Escherichia coli H299] gi|332278916|ref|ZP_08391329.1| DNA-binding response regulator in two-component system response regulatory system with BarA [Shigella sp. D9] gi|83288180|sp|P0AED5|UVRY_ECOLI RecName: Full=Response regulator uvrY gi|83288181|sp|P0AED6|UVRY_SHIFL RecName: Full=Response regulator uvrY gi|551848|gb|AAA24755.1| 24 kD protein (ttg start codon) [Escherichia coli] gi|581252|emb|CAA28982.1| unnamed protein product [Escherichia coli] gi|1736573|dbj|BAA15734.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli str. K12 substr. W3110] gi|1788222|gb|AAC74981.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli str. K-12 substr. MG1655] gi|24052298|gb|AAN43508.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 301] gi|30041610|gb|AAP17338.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|73855217|gb|AAZ87924.1| putative 2-component transcriptional regulator [Shigella sonnei Ss046] gi|81245029|gb|ABB65737.1| putative 2-component transcriptional regulator [Shigella boydii Sb227] gi|157078153|gb|ABV17861.1| response regulator UvrY [Escherichia coli E24377A] gi|169889397|gb|ACB03104.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli str. K-12 substr. DH10B] gi|170521280|gb|ACB19458.1| response regulator UvrY [Escherichia coli SMS-3-5] gi|187428160|gb|ACD07434.1| response regulator UvrY [Shigella boydii CDC 3083-94] gi|188487826|gb|EDU62929.1| response regulator UvrY [Escherichia coli 53638] gi|190901663|gb|EDV61419.1| response regulator UvrY [Escherichia coli B7A] gi|192925975|gb|EDV80621.1| response regulator UvrY [Escherichia coli E22] gi|192955524|gb|EDV86003.1| response regulator UvrY [Escherichia coli E110019] gi|194412013|gb|EDX28325.1| response regulator UvrY [Escherichia coli B171] gi|194421493|gb|EDX37507.1| response regulator UvrY [Escherichia coli 101-1] gi|209912594|dbj|BAG77668.1| two-component response regulator [Escherichia coli SE11] gi|218352252|emb|CAU98008.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli 55989] gi|218361265|emb|CAQ98849.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli IAI1] gi|238860856|gb|ACR62854.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli BW2952] gi|253324178|gb|ACT28780.1| two component transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257759465|dbj|BAI30962.1| DNA-binding response regulator UvrY in two-component regulatory system with BarA [Escherichia coli O103:H2 str. 12009] gi|260448969|gb|ACX39391.1| two component transcriptional regulator, LuxR family [Escherichia coli DH1] gi|281601356|gb|ADA74340.1| Response regulator uvrY [Shigella flexneri 2002017] gi|291323126|gb|EFE62554.1| two-component system [Escherichia coli B088] gi|299877790|gb|EFI86001.1| response regulator UvrY [Escherichia coli MS 196-1] gi|300415401|gb|EFJ98711.1| response regulator UvrY [Escherichia coli MS 115-1] gi|300418840|gb|EFK02151.1| response regulator UvrY [Escherichia coli MS 182-1] gi|300525198|gb|EFK46267.1| response regulator UvrY [Escherichia coli MS 119-7] gi|300528835|gb|EFK49897.1| response regulator UvrY [Escherichia coli MS 107-1] gi|300845747|gb|EFK73507.1| response regulator UvrY [Escherichia coli MS 78-1] gi|301076101|gb|EFK90907.1| response regulator UvrY [Escherichia coli MS 146-1] gi|308120427|gb|EFO57689.1| response regulator UvrY [Escherichia coli MS 145-7] gi|309702209|emb|CBJ01525.1| response regulator [Escherichia coli ETEC H10407] gi|310332471|gb|EFP99706.1| response regulator [Escherichia coli 1827-70] gi|313650131|gb|EFS14544.1| response regulator [Shigella flexneri 2a str. 2457T] gi|315061214|gb|ADT75541.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli W] gi|315136551|dbj|BAJ43710.1| response regulator [Escherichia coli DH1] gi|320176083|gb|EFW51151.1| response regulator [Shigella dysenteriae CDC 74-1112] gi|320178184|gb|EFW53161.1| response regulator [Shigella boydii ATCC 9905] gi|320198607|gb|EFW73207.1| response regulator [Escherichia coli EC4100B] gi|323378209|gb|ADX50477.1| two component transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323948205|gb|EGB44193.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323972723|gb|EGB67924.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|324017949|gb|EGB87168.1| response regulator UvrY [Escherichia coli MS 117-3] gi|324118968|gb|EGC12857.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|331039333|gb|EGI11553.1| response regulator UvrY [Escherichia coli H736] gi|331049418|gb|EGI21490.1| response regulator UvrY [Escherichia coli M718] gi|331063801|gb|EGI35712.1| response regulator UvrY [Escherichia coli TA271] gi|331074258|gb|EGI45578.1| response regulator UvrY [Escherichia coli H591] gi|331079680|gb|EGI50877.1| response regulator UvrY [Escherichia coli H299] gi|332096759|gb|EGJ01750.1| response regulator [Shigella boydii 3594-74] gi|332101268|gb|EGJ04614.1| DNA-binding response regulator in two-component system response regulatory system with BarA [Shigella sp. D9] gi|332343639|gb|AEE56973.1| response regulator [Escherichia coli UMNK88] Length = 218 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|330999483|ref|ZP_08323197.1| putative transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] gi|329574909|gb|EGG56468.1| putative transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 I EA LE ++ A ++LT RE +LA G +++EIA L ++V Sbjct: 124 RTIEEACRLSLDNFGASLE-DREVIKAFKSLTPREKEIFELAAGGKSNKEIASDLDIAVA 182 Query: 204 TVNAYLGSATVKLDAVNRIQAIAK 227 TV + +A K+ + I+A+ K Sbjct: 183 TVKMHRANAFEKMSVHSSIEALHK 206 >gi|329948449|ref|ZP_08295174.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328522072|gb|EGF49192.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 240 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L+ +V+ + + LT R+ L L G ++ EI +LG+ Sbjct: 145 LSPQVLARLMARMPHTVAAGAS-DGSWAEDVEALTPRQREVLLLIARGLSNSEIEAELGI 203 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + T +++ + +LDA +R Q + A G I Sbjct: 204 TRATCRSHITALLARLDARDRAQLVIAAYETGLI 237 >gi|317126429|ref|YP_004100541.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590517|gb|ADU49814.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 225 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 4/112 (3%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE----LFKKRSSAARNLTE 176 V G + E ++ A + L ++ + L+ Sbjct: 102 SVLAGASGYLLKQLSGEGIVAAIRRVAAGEDLSDHPHAKALRDRWAAREEHDPRLKALSP 161 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E L L +G T+ ++ ++L L+ TV Y+ S K+ R QA A Sbjct: 162 VERRILDLIAEGLTNRQVGDRLHLAEKTVKNYVSSVLSKMGMETRTQAAVYA 213 >gi|262165477|ref|ZP_06033214.1| BarA-associated response regulator UvrY [Vibrio mimicus VM223] gi|262171754|ref|ZP_06039432.1| BarA-associated response regulator UvrY [Vibrio mimicus MB-451] gi|261892830|gb|EEY38816.1| BarA-associated response regulator UvrY [Vibrio mimicus MB-451] gi|262025193|gb|EEY43861.1| BarA-associated response regulator UvrY [Vibrio mimicus VM223] Length = 188 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 107 MALSQFSPASENPFADLSERELQIMLMITKGQKVTEISEQLSLSPKTVNSYRYRLFAKLN 166 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 167 INGDVELTHLAIRHGIL 183 >gi|256829662|ref|YP_003158390.1| two component LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578838|gb|ACU89974.1| two component transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 222 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K +LT RE ++L DG S+EIA+ L +SV TV+ + + KL N Sbjct: 145 RKSLPPLADLTVREKEIVRLVIDGKKSKEIADTLFISVKTVHKHRSNILEKLGLNNLADL 204 >gi|221210485|ref|ZP_03583465.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD1] gi|221169441|gb|EEE01908.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD1] Length = 214 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211 >gi|207742850|ref|YP_002259242.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609] gi|206594244|emb|CAQ61171.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609] Length = 252 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 11/201 (5%) Query: 36 YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95 + + ++ ++ + + + + P+ + Sbjct: 40 VCSHGRITAAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAA 96 Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--------NEVII 147 + + + +A V H G + + ++ Sbjct: 97 APVAEIDRGWLAKFIAYDLRNAVADGVYDEGHCIGTYFSFHRLVSVNEPFLASVLRDLTP 156 Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H + + D + + L+ERE G G ++ EIA +S +TV Sbjct: 157 VLHRTLMRAVADTEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQ 216 Query: 208 YLGSATVKLDAVNRIQAIAKA 228 +L K NR+ A Sbjct: 217 HLKHIMDKTGCANRVGVAVLA 237 >gi|330809386|ref|YP_004353848.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377494|gb|AEA68844.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 245 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 20/226 (8%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 + + ++ N+ + ++ I + D + D F Sbjct: 11 SLVRTLNEYVQIDNWVVLIFSNQHVQVVSLPEIADAEEVDA-FIHRYVKGLYLL-DPFYI 68 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + + + + + + V+L I Sbjct: 69 ANRENPQSGFFHLLDIAPAYFLETEYYHKYFAQYISMDEAQYNVQL-DPDRTLCISIGSK 127 Query: 139 LMLANEVIIEAH----GACYQVITDF-LELFKKRSSAARNL------------TERETSC 181 + + E I + E+ +++ A L T RE+ Sbjct: 128 VRFSQEQITMLDIIKPWVTALMHQRMGFEVDVEKTPAEPPLWPETVNQLGTQITARESDV 187 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L G++++EIA KL LS T+ + + KL+ ++ + A+ Sbjct: 188 LRLLLSGFSNKEIAGKLSLSAETIKVHRRNIYAKLNIKSQSELFAR 233 >gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E +QL G + +IA+ + +S T+ +++ + K NR + A+ Sbjct: 155 LTPTELKVVQLVSQGLANRDIADVMNVSQRTIESHVSNMLGKTGLHNRTELARWALE 211 >gi|298290106|ref|YP_003692045.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296926617|gb|ADH87426.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 205 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 7/113 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----SAARNL 174 P+ + ++G + F + ++E + + L Sbjct: 88 IPMAVDAIRHGALDFI--EKPFDADTVVERVRDAIEAHSRRGSSEPGDLLTAHFPGHEML 145 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T RE L G +++E KLG+S T+ + KL A N + Sbjct: 146 TPREREVLVQIASGASNKEAGRKLGISPRTIEVHRARIMEKLGAKNAADLVRI 198 >gi|296158426|ref|ZP_06841257.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295891370|gb|EFG71157.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEE 193 + ++ A + H + + D L + + L+ERE G E Sbjct: 109 DEIVRAIRAVARGHRYLSEALADTLADNLDKPAVGRPHEALSEREFQIFCKLAAGQIPTE 168 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE+L LSV TV+ Y K+ N AI+ G I Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209 >gi|307730304|ref|YP_003907528.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584839|gb|ADN58237.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 292 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 20/228 (8%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 ++ L+ L +++ + +A+ + L L+ + ++ Sbjct: 9 DAERRDGLKALLRQINRLARFNEAQ--DWRQVERGLKRQWPDLLVIDWQDWMS--VADVR 64 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 L+ Y D + + P + + +E V + + + A + + Sbjct: 65 HLLSHYPDLRIAVLTDRISPEVVGELMDEGVRGVVARETDPCL---IVRAFEMVLLGGHY 121 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G + L + + D +R+ + L+ R+ ++ Sbjct: 122 VPSGALPL---NPPLPADT-------AIRPFDDKNPP-PRRARLSNGLSPRQEQIMRCVH 170 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ IA LG+S TV +L S +L A NR A+ A+ G++ Sbjct: 171 MGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216 >gi|269964012|ref|ZP_06178318.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831231|gb|EEZ85384.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 222 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 37/100 (37%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 T + + + +++ F + LT+RE L Sbjct: 111 DAPIEHLTRCIDAVLSGELWLPRKLMAKMLIHFRPYAISSQEISNTLTKREKQILDRIVQ 170 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ EIA+ L ++ TV ++ KL+ R +AI K Sbjct: 171 GQSNLEIADALFVAESTVKTHVYKLYKKLNVSCRKEAIQK 210 >gi|238895472|ref|YP_002920207.1| response regulator [Klebsiella pneumoniae NTUH-K2044] gi|238547789|dbj|BAH64140.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 218 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A+ A Q+ +E K S A +L+ERE + + G EI+E+L LS Sbjct: 119 ASGQRYIASDIAQQMALSQIEPDKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLS 177 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TVN+Y KL+ ++ AIR G Sbjct: 178 PKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209 >gi|256831896|ref|YP_003160623.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256685427|gb|ACV08320.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 218 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 19/147 (12%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAH------------ 150 R +A V VI +A + + +A Sbjct: 72 RCHALNGDTKFLALSVSDAAEDVVAVIRAGARGYVTKNIAPDELADAMVRVRDGDAVFSP 131 Query: 151 GACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 V+ F ++ L+ RE ++L GY E+A +L +SV TV + Sbjct: 132 RLAGFVLDAFGTQHADIATTDDELDRLSAREQEVMRLIARGYAYREVASELFISVKTVES 191 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R + A + Sbjct: 192 HVSAVLRKLQLSSRHELTRWAAARRLL 218 >gi|269955518|ref|YP_003325307.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304199|gb|ACZ29749.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 226 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GY+ E+A +L +S+ TV ++ + KL +R + A Sbjct: 164 DRLSRREQEVMRLIARGYSYREVASELFISIKTVETHVSAVLRKLQLSSRYELTRWAAAR 223 Query: 232 GYI 234 + Sbjct: 224 HIL 226 >gi|170701000|ref|ZP_02891981.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134097|gb|EDT02444.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 214 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASDIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211 >gi|146309694|ref|YP_001174768.1| DNA-binding transcriptional activator UhpA [Enterobacter sp. 638] gi|145316570|gb|ABP58717.1| two component transcriptional regulator, LuxR family [Enterobacter sp. 638] Length = 197 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 8/119 (6%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAA 171 + I V + L+ + +I A +L AA Sbjct: 74 STIMLSVHDSPALVEQALNAGARGFLSKRCSPDELISAVRTV-AAGGCYLTPEIAIKLAA 132 Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE + G +EIA +LGLS TV+ + + KLD N ++ + Sbjct: 133 GRQDPLTKRERQVAEKLAQGMAVKEIAVELGLSPKTVHVHRANLMEKLDVSNDVELARR 191 >gi|52842852|ref|YP_096651.1| response regulator GacA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629963|gb|AAU28704.1| response regulator GacA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 225 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + + S L+ERE + + G ++IA++L LS T+N Y KL Sbjct: 139 MAINSLQESQDSPFDLLSEREMQVMLMITSGMNVQDIADRLFLSSKTINGYRYRMFEKLG 198 Query: 218 AVNRIQAIAKAIRFGYI 234 N ++ A++ I Sbjct: 199 IKNDVELTYLAMKHRII 215 >gi|332705230|ref|ZP_08425311.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332355973|gb|EGJ35432.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 164 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A LTERE + L G +++ IA++L +S TV+A+L +KLD +R + Sbjct: 95 ASLLTERELQIVTLVASGQSNKLIAKQLEISEWTVSAHLRRIFLKLDVDSRAAMV 149 >gi|332531975|ref|ZP_08407859.1| Two-component system regulatory protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038602|gb|EGI75045.1| Two-component system regulatory protein [Pseudoalteromonas haloplanktis ANT/505] Length = 204 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL A LT++E L+LA DG + +IA++L +S T YL A KL+A NR Sbjct: 132 ELAINALDDADPLTDKERKALKLASDGLKTSDIAKQLFISEGTTRNYLSDAIAKLNATNR 191 Query: 222 IQAIAKAIRFGYI 234 I A A + G++ Sbjct: 192 IDAARIAKQKGWL 204 >gi|308447116|ref|XP_003087338.1| hypothetical protein CRE_08625 [Caenorhabditis remanei] gi|308257188|gb|EFP01141.1| hypothetical protein CRE_08625 [Caenorhabditis remanei] Length = 217 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 136 FDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 195 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 196 GVQNRTQAV 204 >gi|253564051|ref|ZP_04841508.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5] gi|251947827|gb|EES88109.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5] gi|301161648|emb|CBW21188.1| putative LuxR family transcriptional regulator [Bacteroides fragilis 638R] Length = 199 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 3/97 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEK 197 +++ + D + + L+ RE L L G ++EIA+K Sbjct: 98 AEEQLVKDILKLHQHAHHDGYPIKDMPPTPPTTGHELSAREIEVLVLITKGLINKEIADK 157 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + + TV + + T KL + A+ GY+ Sbjct: 158 LNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMNGYV 194 >gi|161503514|ref|YP_001570626.1| hypothetical protein SARI_01590 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864861|gb|ABX21484.1| hypothetical protein SARI_01590 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 212 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + I L + + LT RE L+L +GYT+ I+EKL +S+ TV + + Sbjct: 131 LNREAIMAELNAD---APNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMN 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL + + A R I Sbjct: 188 MMRKLQVHKVTELLNCARRMRLI 210 >gi|149909623|ref|ZP_01898276.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36] gi|149807327|gb|EDM67280.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 14/134 (10%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA--------HGACYQ 155 L L + V +I ++++E Sbjct: 73 LRAEELSSRVVILTVSDNKQDVIKLINAGADGYLLKDSEPDLLLEQLHDVLSGQQALSES 132 Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ L + + + LT+RE L GY+++ +A L +S TV ++ S Sbjct: 133 LVGYLDCLHEDNNFEEKLAKLTKRENQILLEISKGYSNKHVASNLHISEGTVKVHVKSLL 192 Query: 214 VKLDAVNRIQAIAK 227 KL+A +R++A Sbjct: 193 KKLEASSRVEAAVM 206 >gi|329927293|ref|ZP_08281574.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] gi|328938596|gb|EGG34980.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] Length = 865 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 34/70 (48%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L LT +ET L L G T++ IA++LGL+V TV YL KL Sbjct: 785 EKLASLDLLDHFGTYGLTPQETQVLALLRRGDTNQSIADELGLTVGTVKVYLNRIYSKLG 844 Query: 218 AVNRIQAIAK 227 +R+QA+ K Sbjct: 845 VSSRVQAVLK 854 >gi|324997312|ref|ZP_08118424.1| response regulator receiver protein [Pseudonocardia sp. P1] Length = 213 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 39/80 (48%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ E R+ A L+ RE ++ G T+ EIA L +S+ TV +L + Sbjct: 133 RLLEQLTEPPPPRAEPAVALSARELDVVRAVARGRTNHEIAGDLFVSLSTVKTHLTNIGS 192 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLDA NR++ A A + Sbjct: 193 KLDARNRVEIAAWAWENRLV 212 >gi|315180871|gb|ADT87785.1| response repressor in two-component regulatory system with UhpB [Vibrio furnissii NCTC 11218] Length = 202 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQL 184 GY+ L V A+G CY L L + +A A LT+RE ++ Sbjct: 94 GARGYLSKRCSPEELVQAVRTSANGGCYLTPDIALRLATPKKAAVQADQLTKREKEVCRM 153 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +G + +A +LGLS TV+ + +A KL N ++ Sbjct: 154 LAEGLDVKTVAAQLGLSYKTVHVHRANAMDKLGVKNNVELAKL 196 >gi|298248552|ref|ZP_06972357.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551211|gb|EFH85077.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEE 193 A ++ +V+ A + LTERE L G ++E Sbjct: 119 ERAARGEMLVQPETIRRVLDYAARRSASALLPAGSIHEVQLTEREQEVLSALAAGERNKE 178 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I +LG++ TV +YL S KL+ +R A+ AI G + Sbjct: 179 IGARLGITRRTVESYLNSLYAKLNVDSRAAAVMVAIERGLL 219 >gi|291557697|emb|CBL34814.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 207 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAK 227 LTERE ++L DG ++ EIAEKL LS TV Y+ K +R Q A+ Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQIAVRY 202 >gi|291530798|emb|CBK96383.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium siraeum 70/3] Length = 207 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAK 227 LTERE ++L DG ++ EIAEKL LS TV Y+ K +R Q A+ Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQIAVRY 202 >gi|217969732|ref|YP_002354966.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gi|217507059|gb|ACK54070.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 226 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 40/84 (47%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ + L + AA LT R+T L+L G G ++EIA +L LSV TV A+ Sbjct: 130 AVSRHLVGNMLARPPEDERAASVLTPRQTEILELIGSGLGTKEIARRLDLSVKTVEAHRA 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +L + + +A R G I Sbjct: 190 QIMERLGVRDIANLLLEAARRGLI 213 >gi|225018320|ref|ZP_03707512.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum DSM 5476] gi|224948920|gb|EEG30129.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum DSM 5476] Length = 206 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE + L +G +++EIAE+L LS TV ++ K +R Q Sbjct: 148 LTPREMEVVALIAEGLSNKEIAERLFLSNGTVRNHISVILEKTGLEHRTQIAV 200 >gi|167749619|ref|ZP_02421746.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702] gi|167657372|gb|EDS01502.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702] Length = 207 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAK 227 LTERE ++L DG ++ EIAEKL LS TV Y+ K +R Q A+ Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQIAVRY 202 >gi|111021259|ref|YP_704231.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820789|gb|ABG96073.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 881 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 157 ITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + L RS +A+ LT RE L T+E+IA L +SV+TV +L Sbjct: 802 FAERLRASFPRSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYR 861 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R AIA A G + Sbjct: 862 KLGVTSRRDAIAAAQHNGLL 881 >gi|54295484|ref|YP_127899.1| transmission activator LetA [Legionella pneumophila str. Lens] gi|22074635|gb|AAL79360.1| GacA regulatory protein [Legionella pneumophila] gi|53755316|emb|CAH16812.1| Legionella transmission activator LetA [Legionella pneumophila str. Lens] gi|307611522|emb|CBX01199.1| Legionella transmission activator LetA [Legionella pneumophila 130b] Length = 219 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + + S L+ERE + + G ++IA++L LS T+N Y KL Sbjct: 133 MAINSLQESQDSPFDLLSEREMQVMLMITSGMNVQDIADRLFLSSKTINGYRYRMFEKLG 192 Query: 218 AVNRIQAIAKAIRFGYI 234 N ++ A++ I Sbjct: 193 IKNDVELTYLAMKHRII 209 >gi|330501190|ref|YP_004378059.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina NK-01] gi|328915476|gb|AEB56307.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina NK-01] Length = 476 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSE 192 + ++L Q + + ++ L+ERET LQ G +++ Sbjct: 375 AARVLLDEAEQGRFDSRACQAVISAAHGEQAPLASKPGNGLLSERETQILQRISSGASNK 434 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A LG+S TV ++ S KL R A KA+ G I Sbjct: 435 EVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGVI 476 >gi|328913171|gb|AEB64767.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 214 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 40/89 (44%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L +++++ + + S LT RE LQ G T++EIA+ L Sbjct: 120 VLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALH 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LS ++ L S KL+ +R +A+ A Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIA 208 >gi|328554812|gb|AEB25304.1| ComA [Bacillus amyloliquefaciens TA208] Length = 214 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 40/89 (44%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L +++++ + + S LT RE LQ G T++EIA+ L Sbjct: 120 VLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALH 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LS ++ L S KL+ +R +A+ A Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIA 208 >gi|319785654|ref|YP_004145129.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317464166|gb|ADV25898.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 214 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F + RE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 139 RARYRFHDDRAPGEGFNPREVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGT 198 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 199 RDRTRAVLKAITLRII 214 >gi|315181312|gb|ADT88226.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 216 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%) Query: 143 NEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E+I + V + L + A LT RE L+ G ++ ++AE Sbjct: 120 AEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRELQILRSLQTGASNMQMAES 179 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L +S TV ++L KL NR QAI A Sbjct: 180 LFISEFTVKSHLYQIFKKLSVKNRTQAITWA 210 >gi|308174858|ref|YP_003921563.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607722|emb|CBI44093.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] Length = 214 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 40/89 (44%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L +++++ + + S LT RE LQ G T++EIA+ L Sbjct: 120 VLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALH 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LS ++ L S KL+ +R +A+ A Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIA 208 >gi|217970367|ref|YP_002355601.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gi|217507694|gb|ACK54705.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 220 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 36/85 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + D L +AA LT RE LQL +G TS +I ++L ++ TV + Sbjct: 126 LCPEVAATVADALRDSPGVYAAAPRLTARERQVLQLIAEGLTSVQIGDRLHIAASTVEVH 185 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + KLD N + AI G Sbjct: 186 RRNLMRKLDLHNVAELTRYAIHSGI 210 >gi|163735511|ref|ZP_02142943.1| DNA-binding response regulator, LuxR family protein [Roseobacter litoralis Och 149] gi|161391131|gb|EDQ15468.1| DNA-binding response regulator, LuxR family protein [Roseobacter litoralis Och 149] Length = 221 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 42/76 (55%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A +++ FL++ + +S L+ +E + L G T+ E+A++L +S +TV +L + Sbjct: 128 AAGKMVFPFLDVRELQSDPIHLLSRKERATLDALSKGLTNRELAKELSISTNTVKFHLTN 187 Query: 212 ATVKLDAVNRIQAIAK 227 KL NR QAIA Sbjct: 188 LYEKLSVKNRAQAIAF 203 >gi|153834045|ref|ZP_01986712.1| transcriptional regulator, LuxR family protein [Vibrio harveyi HY01] gi|148869600|gb|EDL68590.1| transcriptional regulator, LuxR family protein [Vibrio harveyi HY01] Length = 211 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSE 192 ++ + + I + E + + AA LT+RE+ +L G ++ Sbjct: 112 SAVSQGDVWFPRPILNKAIYHYQEGGEDPTLAADYLSTKFLLTKRESEICKLMLQGLSNT 171 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +IA + +S++T+ + + KL+ +R + +A A + Sbjct: 172 QIARQSNVSINTIKTHASNVLHKLNVHSRYELLAMAKK 209 >gi|90425279|ref|YP_533649.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107293|gb|ABD89330.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 209 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 5/96 (5%) Query: 134 FTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 F ++ E IEA ++ L LT RE L+L G T+ Sbjct: 109 FRGPEIVTRVEEAIEAFTRRRAAGLVPKVPSLNF---PGREPLTMREREVLELFSSGNTN 165 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +E +LG+S T+ + + KL A N + Sbjct: 166 KEAGRQLGISPRTIEYHRANIMKKLGAKNATDLVRI 201 >gi|325971781|ref|YP_004247972.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324027019|gb|ADY13778.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 295 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 TERE + +QL G T++EIA +LG+S +TVN ++ + K +RI Sbjct: 238 TEREFAVIQLISKGLTNKEIASQLGISANTVNNHVANIYGKTQVRSRIDL 287 >gi|323977906|gb|EGB72992.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] Length = 218 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|283457639|ref|YP_003362223.1| response regulator [Rothia mucilaginosa DY-18] gi|283133638|dbj|BAI64403.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Rothia mucilaginosa DY-18] Length = 235 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 6/117 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTER 177 R G+ + S F++ A +V + ++ A LTER Sbjct: 120 RPGYVRRALEAGASGFVVKDTGARQLAEAI-RRVHAGLRVVDPSLAADSLVTGASPLTER 178 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ A G T+++IA L LS TV YL +A K A R A+ A G++ Sbjct: 179 EAQVLREAASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIATENGWL 235 >gi|288934571|ref|YP_003438630.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|288889280|gb|ADC57598.1| two component transcriptional regulator, LuxR family [Klebsiella variicola At-22] Length = 218 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A+ A Q+ +E K S A +L+ERE + + G EI+E+L LS Sbjct: 119 ASGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLS 177 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TVN+Y KL+ ++ AIR G Sbjct: 178 PKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209 >gi|253987957|ref|YP_003039313.1| monoamine regulon transcriptional regulator MoaR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779407|emb|CAQ82568.1| similar to monoamine regulon transcriptional regulator moar [Photorhabdus asymbiotica] Length = 219 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 160 FLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +EL + LT +E + L G +++ IA+ L +S+ TV +L + +K Sbjct: 143 LIELATRDLLPETPTILTAKEQEIINLVRAGSSNKRIAQVLNISLSTVKTHLRNIFIKTK 202 Query: 218 AVNRIQAI 225 NR + + Sbjct: 203 VTNRTELV 210 >gi|239982332|ref|ZP_04704856.1| chitinase two-component response regulator [Streptomyces albus J1074] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 41/145 (28%), Gaps = 4/145 (2%) Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 W + T + + L G AG V + L + Sbjct: 75 WADVLVLTTFDLDEYVFGALRAGA---AGFLLKNTDAPGLLAAVRTVAAGEGLIAPAVTR 131 Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 LT RE L G+G ++ IAE+L ++ T + Sbjct: 132 -RLIAAFATGRAPRPAGAEPPELAALTRREREVLGCLGEGLSNARIAERLEMAEATAKTH 190 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + KL +R QA A G Sbjct: 191 VSRVLGKLGLRSRAQAALLAQELGI 215 >gi|255039276|ref|YP_003089897.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254952032|gb|ACT96732.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 212 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE + GYT+E+I+ L LS TV + + KL N + I AI+ G Sbjct: 152 NLTFREIEIIGFIKKGYTNEQISAALNLSFFTVKTHRKNIHFKLGINNVAELIEFAIQNG 211 Query: 233 Y 233 Sbjct: 212 I 212 >gi|157850161|gb|ABV89906.1| acyl-homoserine lactone receptor [Burkholderia vietnamiensis] Length = 146 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 39/151 (25%), Gaps = 13/151 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 D + I+W + G+A Sbjct: 2 WXGRYQARNYIEIDSTVREGALSTNMIVWPDVDRIDPC-----PLWEDARDFGLAVGVAQ 56 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN 173 G + + L I + +++ F+ L K +A Sbjct: 57 SSWAARGAFGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-LPKLSPAAGVT 115 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 LT RE +G T+ EI + L +S T Sbjct: 116 LTAREREVPCWTAEGKTACEIGQILSISERT 146 >gi|43289|emb|CAA27328.1| unnamed protein product [Escherichia coli] Length = 211 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 134 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 193 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 194 THLAIRHGL 202 >gi|33865914|ref|NP_897473.1| DNA-binding response regulator [Synechococcus sp. WH 8102] gi|33633084|emb|CAE07895.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102] Length = 228 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E + A + + L + + LT RE L G + +IAE Sbjct: 130 EDRKPLEAAVLAVMGHHSYRSPSLRSDELPYLSCPRLTPREYEVLDRLARGMSDRDIAED 189 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L ++ T Y L+ NR+QA+ K +R G + Sbjct: 190 LVVTEETARTYTKRLLRTLEVNNRVQAVLKGMRCGMV 226 >gi|83747869|ref|ZP_00944902.1| PrhJ [Ralstonia solanacearum UW551] gi|207739207|ref|YP_002257600.1| transcription regulator prhj protein [Ralstonia solanacearum IPO1609] gi|83725516|gb|EAP72661.1| PrhJ [Ralstonia solanacearum UW551] gi|206592580|emb|CAQ59486.1| transcription regulator prhj protein [Ralstonia solanacearum IPO1609] Length = 175 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + + L E G + E + LT R+ L+ A Sbjct: 62 EAAGELPSGQLQPLTLEQTYAMLGRILEARRHGCEPRPGTGARLSALTPRQHDILREAAH 121 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ EIA+ L +SV TV +++ ++L A NR + A Sbjct: 122 GKSNVEIAQTLHISVETVKSHVRQILMRLQARNRTELAAI 161 >gi|330836949|ref|YP_004411590.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] gi|329748852|gb|AEC02208.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] Length = 299 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 32/50 (64%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 TERE S ++L +G T++EIA +L +S +TVN ++ + K + +RI Sbjct: 240 TEREFSVIKLIANGRTNKEIAMELNISTNTVNNHVANIFSKTEVRSRIDL 289 >gi|299133992|ref|ZP_07027185.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298590739|gb|EFI50941.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 262 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L+ RE L+ +G +++ IA K+ +S TV ++ S K+ +R QA Sbjct: 167 APIPQLSLREKVVLRCIIEGGSNKMIARKIAISEATVKVHVKSILRKIRVHSRTQAAIWG 226 Query: 229 IRFGY-IC 235 + G+ +C Sbjct: 227 MNSGFSLC 234 >gi|157146847|ref|YP_001454166.1| transcriptional regulator FimZ [Citrobacter koseri ATCC BAA-895] gi|157084052|gb|ABV13730.1| hypothetical protein CKO_02622 [Citrobacter koseri ATCC BAA-895] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+ +G +++EIAE+L LS T++A+ + KL ++ I A Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIFSKLGLHTIVELIDYAKVHD 208 Query: 233 YI 234 + Sbjct: 209 LL 210 >gi|117624057|ref|YP_852970.1| response regulator [Escherichia coli APEC O1] gi|115513181|gb|ABJ01256.1| response regulator [Escherichia coli APEC O1] Length = 206 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 129 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 188 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 189 THLAIRHGL 197 >gi|94497938|ref|ZP_01304503.1| probable two-component response regulator [Sphingomonas sp. SKA58] gi|94422666|gb|EAT07702.1| probable two-component response regulator [Sphingomonas sp. SKA58] Length = 260 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 37/70 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT ++ + L G +++IA LG+S+ T+ A++ + KL ++R Q Sbjct: 188 EDDIVRRIDSLTPQQKTVLGHLVRGRLNKQIAHDLGVSMTTIKAHVSAILQKLGVLSRTQ 247 Query: 224 AIAKAIRFGY 233 A+ KA R G+ Sbjct: 248 AVIKANRVGF 257 >gi|74318255|ref|YP_315995.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057750|gb|AAZ98190.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 211 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R L++RE G + +IA +L LSV T++ Y T KL+ + + Sbjct: 140 ERRGVLHEALSDRELQVFLRLARGESVSDIASQLHLSVKTISTYRSRVTEKLNVASNAEL 199 Query: 225 IAKAIRFGYI 234 A+R G I Sbjct: 200 ATYALRHGLI 209 >gi|15613144|ref|NP_241447.1| two-component response regulator [Bacillus halodurans C-125] gi|10173195|dbj|BAB04300.1| two-component response regulator [Bacillus halodurans C-125] Length = 201 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G T+E+IA L L+ TV Y+ +A KL+ NR QAI KA G Sbjct: 140 PLTEREQEVLRLTKGGKTTEQIATVLYLTNGTVRNYISTAIQKLEVENRHQAIQKAEEKG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|319440533|ref|ZP_07989689.1| putative transcription regulator [Corynebacterium variabile DSM 44702] Length = 146 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S +LT RE ++L GYT E+A++L +SV TV ++ K NR Q Sbjct: 76 EDAGSPLIDDLTPREVEVMRLLARGYTYREMAKRLFISVKTVETHVSHVLRKTQQTNRHQ 135 Query: 224 A 224 Sbjct: 136 L 136 >gi|303257286|ref|ZP_07343300.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium 1_1_47] gi|302860777|gb|EFL83854.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium 1_1_47] Length = 218 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 37/65 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + R+LT RE +LA DG T++EI+ L +++ TV + G+A KL+ + ++A+ Sbjct: 148 ARYRSLTPREKEIFKLAADGKTNKEISSLLNIALPTVKMHRGNAFDKLNVHSSVEALKLY 207 Query: 229 IRFGY 233 G Sbjct: 208 DSLGL 212 >gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 29/57 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE+ L G G T+ +IA+ LG+S TVN +L VKL R A A Sbjct: 258 RLTPRESDVLLWLGKGKTNRDIADILGMSPRTVNKHLEHIFVKLGVETRSAAAVLAR 314 >gi|239983037|ref|ZP_04705561.1| two-component system response regulator [Streptomyces albus J1074] gi|291454869|ref|ZP_06594259.1| two-component system response regulator [Streptomyces albus J1074] gi|291357818|gb|EFE84720.1| two-component system response regulator [Streptomyces albus J1074] Length = 220 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183 + T + A S R L+ RE L+ Sbjct: 109 AGGVKGYVVTGTRTNIGLPTRPGAAPIGSAAARMHRRPPGAPSHPGGYRELSGREVEVLR 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++ I +GLS TV ++L KL +R +A A+R G I Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|284041267|ref|YP_003391197.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283820560|gb|ADB42398.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 213 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 24/153 (15%) Query: 103 QLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEFLMLANEVI------- 146 +L+++L V +GYV+ ++E L + Sbjct: 64 ELTIQLRQRFPQVKICLLTVADQPEAIKEAIRAGADGYVLKSAERSELETALRTISKGNK 123 Query: 147 -----IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + A I +L K +++RE L+L ++ +IAEKL +S Sbjct: 124 FYSEQVMLQLANEVGIEVIPDLDK---PQKITISKRELDVLKLIAQEFSGTQIAEKLFIS 180 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV + KL I + AI+F + Sbjct: 181 PTTVETHRKHLMQKLGVQTTIGLVKYAIKFNLV 213 >gi|256824492|ref|YP_003148452.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687885|gb|ACV05687.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 228 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 39/128 (30%), Gaps = 3/128 (2%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKK 166 + G V + L+ +L + Sbjct: 100 VRALGAGADGFLLKAEDPRQIIDAVRSAAAGHSPLSPTSARSLVRLVGP--GSRADLASR 157 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A LTERE L G+G T+ +IA +L +S TV L K NR Q Sbjct: 158 ARELAAGLTERERQVAALVGEGLTTPQIAARLFVSEATVKTQLAEVQRKWGCENRTQVAV 217 Query: 227 KAIRFGYI 234 A R G I Sbjct: 218 WADRAGLI 225 >gi|284989376|ref|YP_003407930.1| LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062621|gb|ADB73559.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 983 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 68/251 (27%), Gaps = 35/251 (13%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN---ILIE 70 ++ + + ++ A+ + + P D + + Sbjct: 733 VERVRAAVRHVRTYWDVDRLAVLRLVATALAPVGDAAAAARSQGDEAAVRRWTGVGEELV 792 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + + P ++ + +E+ L A + F Sbjct: 793 AQARAAVEDRVRDVGPFGVEAAAWQARVEAEAARLAGRAAPELWRAAV-----DAFGYGH 847 Query: 131 YVIFTSEFLMLANEVIIEAHGA-----------------------CYQVITDFLELF--- 164 LA ++ A + L Sbjct: 848 VYEQARSRWRLAEALLAAGDRAAAAEELRAAAEVAARLGATPLRSAVTALARRGRLDLPG 907 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +AA T RE L+L G T+ +I +L +S T + ++ KL A R + Sbjct: 908 VGRVPAAAAVFTPREAEVLRLLAQGRTNRQIGAELYMSEKTASVHVSRILAKLGAGGRTE 967 Query: 224 AIAKAIRFGYI 234 A+A A G + Sbjct: 968 AVALAAARGLL 978 >gi|183982964|ref|YP_001851255.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183176290|gb|ACC41400.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 1078 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 13/194 (6%) Query: 47 RQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV 106 + + + + D +L + ++ + + Sbjct: 888 TRARVAMAEGEPEQAERAAYEALTCAADVGARTCLPDILECL-GALAADQGRDREAARVY 946 Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-- 164 G+ G +R + GY + + + A + + Sbjct: 947 GAAEGIRQRIGA---MRFKIYDAGYQKSVAALHATMSTDEFDTAWAHGAAFSAEEAIDYL 1003 Query: 165 -------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 K+ +S LT E + ++L G G ++++IA++L LS TV +L KL Sbjct: 1004 QHRRGERKRATSGWAALTRAELNVVRLVGQGLSNKDIAQRLFLSPRTVQTHLTHVYTKLG 1063 Query: 218 AVNRIQAIAKAIRF 231 +R+Q +A + Sbjct: 1064 FNSRVQLAQQAAQH 1077 >gi|113969929|ref|YP_733722.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113884613|gb|ABI38665.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 220 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205 Query: 225 IA 226 + Sbjct: 206 VI 207 >gi|67923468|ref|ZP_00516945.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] gi|67854703|gb|EAM49985.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] Length = 94 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 156 VITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + L L + LT ET +QL G ++ E+AEKL +S T+ +++ + Sbjct: 13 LHKANLSLDEGSRIHVPNHVELTPTETKVVQLVAKGLSNREVAEKLSVSRRTIESHVSNM 72 Query: 213 TVKLDAVNRIQAIAKAIRF 231 K NR + A+ Sbjct: 73 LNKTSLKNRTELARWAMEN 91 >gi|326801202|ref|YP_004319021.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326551966|gb|ADZ80351.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 216 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN-------LT 175 Y+I L + A C ++ L K ++ + + Sbjct: 97 AGATAYLIKNVSRDELLFAIRFAAQGEPYICAEISFKLLRQAMKVVPSSASANATDLQIN 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L DG+T++EIAE+L S TV Y S K N I A + G + Sbjct: 157 NREMEVLALTADGFTNQEIAERLFTSKRTVEGYRQSLIEKTGVRNTAALIKYAYQNGIL 215 >gi|255039459|ref|YP_003090080.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254952215|gb|ACT96915.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 212 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ G+T +EIA +L LS HTV Y S KL I A++ G Sbjct: 147 LSPREKQVLRKVCSGHTIKEIAYELKLSTHTVQYYHRSVMDKLKVRRTTDLIVYAMQHGL 206 >gi|297191473|ref|ZP_06908871.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722089|gb|EDY65997.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 326 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 16/226 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ ++ RL + + A + D + + + + Sbjct: 117 ELLDNVDDIRIRLEALAESCTRESLAFH-----PDNTLTEGSVEAGRPLNERALARGVRF 171 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 Y D + + E E ++ + ++ + G + Sbjct: 172 RSIYLDSV----ANDRVTKAHAQWMAERQSEIRTSPTLPMRLLIVDTSAAIVAGLPGQAQ 227 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++F+S ++LA + EA+ + S A LT +E LQL G Sbjct: 228 PSALLFSSPPVVLAMRALFEAYWEHASPMDA-------PVSRAGGLTPQERKLLQLLATG 280 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E +A LG+ V T + +L A +R +A +A R +I Sbjct: 281 LTDEAVARALGIGVRTERRIVAELMERLGASSRFEAGVQATRREWI 326 >gi|170743785|ref|YP_001772440.1| two component LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168198059|gb|ACA20006.1| two component transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 220 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 15/162 (9%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147 I + +L+ RL +A V ++ L Sbjct: 51 DVAIIDMSLPDLNGLELARRLAERCPQVKLLALTVHESRAYVQPMLQAGARGYLLKRSAA 110 Query: 148 EAHGACYQVITDF---------------LELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + + +L+ RET L+ G++++ Sbjct: 111 DELLRAIRAVAAGGLYLDPAVADKALPGAPAARSAEPGGADLSPRETEVLRHTAQGFSNK 170 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L +SV TV Y A KL R + G++ Sbjct: 171 EIALRLDVSVKTVETYKARAAEKLHLRTRADIVRFGAARGWL 212 >gi|325923449|ref|ZP_08185108.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546071|gb|EGD17266.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 194 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 156 VITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V++ ++ + + LT RE L G +++EIA L + + TV ++ Sbjct: 110 VLSHERPPNRRATPPSPQPTMYRLTPREREVADLLSRGLSNKEIARDLRIELATVKNHVH 169 Query: 211 SATVKLDAVNRIQAIA 226 S K DA R+QA+ Sbjct: 170 SVLRKTDARTRLQAVV 185 >gi|325926758|ref|ZP_08188066.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325542839|gb|EGD14294.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F+ + + ERE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 135 RARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 195 RDRTRAVLKAITLRVI 210 >gi|325523797|gb|EGD02039.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 263 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 68/241 (28%), Gaps = 27/241 (11%) Query: 8 GKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 G+ SL + + LI+ + ++ + PR Sbjct: 15 GRLIESLDQPGFWLSLVRLIEEYVAVDSWV--ALMFGDGRPRVFAECPYEGGGPDPLFRD 72 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D F +++ + + + + V L Sbjct: 73 YVQGLYLL-DPFYIANRDAPKSGLFRLSDVAPECFRDTEYYTLYFTHNVVEDEVQYNVVL 131 Query: 125 GFHKNGYVIFTSEFL--MLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------- 173 + + S+ A ++ ++ L + AA Sbjct: 132 DDVRTLCLSLGSKRRFGPEAVALLDLMRPWVAALMRQRLAFERAPDEAAPPKRPGGPDRF 191 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE ++L G +++E+A KL +S TV + + KLD ++ + Sbjct: 192 EQAMARLGTPLTARELDVIRLILSGRSNKEVANKLAISAETVKVHRRNIYGKLDINSQSE 251 Query: 224 A 224 Sbjct: 252 L 252 >gi|315645417|ref|ZP_07898541.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] gi|315278895|gb|EFU42205.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] Length = 873 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 14/156 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 ++ + +R L G L + Y + A E ++ Sbjct: 717 LEYQRGQRKQSLQLLREALRLGAQNGY-VRTFLDEGADMYQLLMRYTSHPAQEEDVDMGL 775 Query: 152 ACYQVITDFL-------------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L + +S+ L E + L+L G ++++A L Sbjct: 776 IQTHHYARMLMERFPNHVKADPPHITSSQSALPEQLNRNEKNLLRLIMQGAANKQMAAAL 835 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GLS T+ YL KL +R QA+ +A + Sbjct: 836 GLSEGTIRVYLSRLYDKLGVTSRTQALVRAQSLNLL 871 >gi|316932396|ref|YP_004107378.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315600110|gb|ADU42645.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 225 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ++ L + +G +++IA +LG+S T+ A++ + KL +R QA+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|262280464|ref|ZP_06058248.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262258242|gb|EEY76976.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 216 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++LT ++ L + +G +++IA +L +S T+ A++ + KL Sbjct: 135 LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194 Query: 217 DAVNRIQAI 225 NR QA+ Sbjct: 195 GVQNRTQAV 203 >gi|196230226|ref|ZP_03129089.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225823|gb|EDY20330.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 211 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 QV+ F E + + + +L+ RE L+L GY +EIA++L + + TV ++ Sbjct: 129 HIARQVVQHFHE-EGRLARESHHLSPREAEVLELLAAGYIYKEIADRLQIGLETVRTHVK 187 Query: 211 SATVKLDAVNRIQAIAK 227 + K+ +R++A+A+ Sbjct: 188 NICAKMHVRSRVEAVAR 204 >gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 245 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 11/107 (10%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----------NLTERETSCLQLAGD 187 + ++ A + + L S LT RE L+ + Sbjct: 137 RAASPSEVVARELASIRALLSERTLPPTIPSQPPTPTPLPPPIKVELTPREQQVLEKVAE 196 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA++L SV V Y+ K +R + + A+ +G I Sbjct: 197 GLMNKEIAKQLQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 243 >gi|302558693|ref|ZP_07311035.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces griseoflavus Tu4000] gi|302476311|gb|EFL39404.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces griseoflavus Tu4000] Length = 268 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 166 KRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R +A L+ RE + L G T+++IA +S TV ++ KL + +R Sbjct: 190 GRPAAPDRSGYQLSTREAEIMDLIASGMTNQQIAATCFISEKTVKNHINRIFAKLHSTSR 249 Query: 222 IQAIAK 227 +A AK Sbjct: 250 SEAAAK 255 >gi|298251564|ref|ZP_06975367.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546156|gb|EFH80024.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1171 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 41/79 (51%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ + S +LT+RE L+L G +++EIA+ L + + TV ++ + K Sbjct: 1093 ALSSAQQASAVFSVPGASLTQREQEVLRLLATGASNQEIAQTLVIELPTVKKHVSNLLGK 1152 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L A +R QAI++A + Sbjct: 1153 LRASSRTQAISRARALSLL 1171 >gi|291454177|ref|ZP_06593567.1| two-component system response regulator [Streptomyces albus J1074] gi|291357126|gb|EFE84028.1| two-component system response regulator [Streptomyces albus J1074] Length = 214 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 41/145 (28%), Gaps = 4/145 (2%) Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 W + T + + L G AG V + L + Sbjct: 74 WADVLVLTTFDLDEYVFGALRAGA---AGFLLKNTDAPGLLAAVRTVAAGEGLIAPAVTR 130 Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 LT RE L G+G ++ IAE+L ++ T + Sbjct: 131 -RLIAAFATGRAPRPAGAEPPELAALTRREREVLGCLGEGLSNARIAERLEMAEATAKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + KL +R QA A G Sbjct: 190 VSRVLGKLGLRSRAQAALLAQELGI 214 >gi|171058278|ref|YP_001790627.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775723|gb|ACB33862.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 209 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETS 180 GYV S+ + + A G Y L + ++ + L++RE Sbjct: 96 AGAYGYVNKGSDPAQIVAAARMVAQGRKYITAEMAQMLVENLTTPSSEAAHDKLSDRELQ 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + G +IAE+L LS TV+ Y KL N + AIR G + Sbjct: 156 TLTMIASGKRLSDIAEELTLSPKTVSVYRARVLEKLGLANNSELTVYAIRNGLV 209 >gi|269929119|ref|YP_003321440.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788476|gb|ACZ40618.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 209 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 10/92 (10%) Query: 139 LMLANEVIIEAHGACYQ----------VITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + I+ A A Q + A LT RE LQL G Sbjct: 102 RDADPDEIVAALRAAGQGLTVLDPRAVPFLTTDAAPRASPDAGEPLTPREREILQLIAQG 161 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ IA +LG+S HTV ++GS KL A + Sbjct: 162 LPNKSIALELGISEHTVKFHVGSILDKLGASS 193 >gi|269838263|ref|YP_003320491.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269787526|gb|ACZ39669.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 875 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + I ++ A LT RE L L G ++ EIA +L LS TV Sbjct: 779 RRLRAVGARGIPRGPRPSTRQHPA--GLTRREAEVLDLMAQGLSNTEIAGRLYLSPKTVE 836 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231 ++ S KL+ +R +AI A R Sbjct: 837 HHVSSILTKLNVSSRHEAIRVAERR 861 >gi|152999376|ref|YP_001365057.1| response regulator receiver protein [Shewanella baltica OS185] gi|151363994|gb|ABS06994.1| response regulator receiver protein [Shewanella baltica OS185] Length = 221 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++ + Q + E+ + + LT RE + +Q G ++EIA +L +S Sbjct: 124 DRTLLSKVFRRVVQKLDGNNEMLSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCIS 183 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 HTV A++ S K + NR++ + A Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|126731547|ref|ZP_01747353.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] gi|126708083|gb|EBA07143.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] Length = 200 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 45/112 (40%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V K+G F + L + + A ++ + K A LT RE Sbjct: 88 VADAALKSGAQGFIPKTLSARSLLTAARFMAAGEIYAPIEFMQKDPDDAGGMLTRRELEV 147 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ DG ++EIA L L TV ++ + + KL+A NR A A G Sbjct: 148 LRGICDGKANKEIARDLDLQEVTVKLHVKTLSRKLEARNRTHAAMIARDRGL 199 >gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L +G ++ +I EKL LS T+ Y+ S K ++ NR + + A++ Sbjct: 153 SLTEREQQVLDLLTEGRSNVKIGEKLHLSPRTIEKYVSSLLRKTESNNRAELVRFALKNH 212 Query: 233 YI 234 I Sbjct: 213 LI 214 >gi|320007816|gb|ADW02666.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 220 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183 + T + + S R L+ RE L+ Sbjct: 109 AGGVKGYVVTGTRTNIGHPTRPGMAPIGANAARMHRRPPGTPSHPGGYRELSGREVEVLR 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++ I +GLS TV ++L KL +R +A A+R G I Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|297156972|gb|ADI06684.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 1039 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + A LT RE L+L G ++ +IAE+L +S T + ++ + KL+ R Sbjct: 957 AAEPTDPAEALGLTPRERDVLRLVALGRSNRQIAEELFISPKTASVHVSNILAKLEVSGR 1016 Query: 222 IQAIAKAIRFGYI 234 +A A A R + Sbjct: 1017 GEAAAVAHRLRLV 1029 >gi|282860465|ref|ZP_06269531.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564201|gb|EFB69737.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 251 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 C + + + A LT+RE L L + IA LG+S Sbjct: 114 ALDAVCRGAMVIAPAPSRTPPAPAAHGSLSPLTQREREVLALVATQPDNTAIALALGVSP 173 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +++ KL +R Q + A I Sbjct: 174 LTVKSHINRVMRKLAVSSRAQLVILAYESRLI 205 >gi|271961694|ref|YP_003335890.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504869|gb|ACZ83147.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 204 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L+L +G + EIA +L LS TV +L + KL+A +R A+ A G Sbjct: 143 PLTPRESDVLRLTAEGAEATEIAARLFLSAGTVRNHLTAIVSKLNARSRTDAVRIAGDAG 202 Query: 233 YI 234 +I Sbjct: 203 WI 204 >gi|256830064|ref|YP_003158792.1| two component LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579240|gb|ACU90376.1| two component transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 222 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 V+ ++ +++ +L+ RE ++L +G T EEIA KL +S TV Sbjct: 132 LSPSVLRRLSDISGRKAKTVDASYGSLSLREQQVMRLLAEGLTPEEIAAKLFVSRKTVLN 191 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL + + + A R G I Sbjct: 192 HRYAIMTKLGIKSPVAFVRHAARLGLI 218 >gi|297202175|ref|ZP_06919572.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713613|gb|EDY57647.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 205 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A DG T+ E+A+ L LS TV YL +A KL NR +A+ A Sbjct: 142 ANPLTDREREVLRAAADGSTNAELAQTLHLSQGTVRNYLSTAIQKLAVRNRAEAVRIARE 201 Query: 231 FGYI 234 G++ Sbjct: 202 KGWL 205 >gi|167725393|ref|ZP_02408629.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] Length = 86 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ + LT +E L+L G +++EIA + + TV +L + KLDA +R A+ Sbjct: 14 PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 73 Query: 226 AKAIRFGYI 234 +A+ G + Sbjct: 74 RRALVLGLL 82 >gi|156741914|ref|YP_001432043.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii DSM 13941] gi|156233242|gb|ABU58025.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 880 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLTERETSCLQ 183 + FL + H LE F A LT+RE L+ Sbjct: 767 EGYVRIFLDAGARLARLLHRIGSAYAGRLLEAFPSSVRARVANLTESPEPLTDRERDVLR 826 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G T +IA +L +SV+TV ++ S KL +R A+A+A Sbjct: 827 LMARGLTYRQIASELVVSVNTVRYHIKSLYSKLQVNSRTLALARAHELHL 876 >gi|331661923|ref|ZP_08362846.1| fimbriae Z protein [Escherichia coli TA143] gi|331666890|ref|ZP_08367764.1| fimbriae Z protein [Escherichia coli TA271] gi|331060345|gb|EGI32309.1| fimbriae Z protein [Escherichia coli TA143] gi|331066114|gb|EGI37998.1| fimbriae Z protein [Escherichia coli TA271] Length = 194 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 134 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 193 Query: 234 I 234 I Sbjct: 194 I 194 >gi|323938486|gb|EGB34737.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] gi|323963302|gb|EGB58866.1| luxR family protein regulatory protein [Escherichia coli H489] Length = 194 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 134 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 193 Query: 234 I 234 I Sbjct: 194 I 194 >gi|323163987|gb|EFZ49795.1| response regulator [Shigella sonnei 53G] Length = 194 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 134 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 193 Query: 234 I 234 I Sbjct: 194 I 194 >gi|320660398|gb|EFX27869.1| transcriptional regulator FimZ [Escherichia coli O55:H7 str. USDA 5905] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|300940508|ref|ZP_07155079.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300454708|gb|EFK18201.1| response regulator receiver domain protein [Escherichia coli MS 21-1] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 155 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|300903191|ref|ZP_07121123.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|301301692|ref|ZP_07207827.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300404806|gb|EFJ88344.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300843189|gb|EFK70949.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|315256366|gb|EFU36334.1| response regulator receiver domain protein [Escherichia coli MS 85-1] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 155 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|300897236|ref|ZP_07115679.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300929101|ref|ZP_07144595.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|301020323|ref|ZP_07184432.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300358978|gb|EFJ74848.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300398802|gb|EFJ82340.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300462974|gb|EFK26467.1| response regulator receiver domain protein [Escherichia coli MS 187-1] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 155 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|297516794|ref|ZP_06935180.1| transcriptional regulator FimZ [Escherichia coli OP50] Length = 192 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 132 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 191 Query: 234 I 234 I Sbjct: 192 I 192 >gi|293408685|ref|ZP_06652524.1| hypothetical protein ECEG_03632 [Escherichia coli B354] gi|291471863|gb|EFF14346.1| hypothetical protein ECEG_03632 [Escherichia coli B354] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|293418602|ref|ZP_06661037.1| hypothetical protein ECCG_03486 [Escherichia coli B088] gi|291325130|gb|EFE64545.1| hypothetical protein ECCG_03486 [Escherichia coli B088] gi|323184837|gb|EFZ70207.1| response regulator [Escherichia coli 1357] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|256424138|ref|YP_003124791.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256039046|gb|ACU62590.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 255 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G +IAE++ ++ TV Y +L+ N ++A+A A+ Sbjct: 195 LTEREVEVLRLHAQGLNINQIAERIFVAPDTVKYYRRRIFERLEVSNIVEALAYAVNAKL 254 Query: 234 I 234 I Sbjct: 255 I 255 >gi|291281446|ref|YP_003498264.1| Fimbrial Z protein [Escherichia coli O55:H7 str. CB9615] gi|209777794|gb|ACI87209.1| fimbrial Z protein [Escherichia coli] gi|290761319|gb|ADD55280.1| Fimbrial Z protein [Escherichia coli O55:H7 str. CB9615] Length = 231 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 230 Query: 234 I 234 I Sbjct: 231 I 231 >gi|213416840|ref|ZP_03349984.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 84 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 24 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 83 Query: 234 I 234 I Sbjct: 84 I 84 >gi|209917751|ref|YP_002291835.1| transcriptional regulator FimZ [Escherichia coli SE11] gi|300819561|ref|ZP_07099755.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300820219|ref|ZP_07100371.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300920641|ref|ZP_07137059.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300925813|ref|ZP_07141667.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300949234|ref|ZP_07163266.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300954356|ref|ZP_07166813.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|301327812|ref|ZP_07221006.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|309797189|ref|ZP_07691585.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331672065|ref|ZP_08372861.1| fimbriae Z protein [Escherichia coli TA280] gi|209911010|dbj|BAG76084.1| putative fimbrial regulator [Escherichia coli SE11] gi|300318655|gb|EFJ68439.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300412380|gb|EFJ95690.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300418107|gb|EFK01418.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300451315|gb|EFK14935.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300527004|gb|EFK48073.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300527887|gb|EFK48949.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300845649|gb|EFK73409.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|308119173|gb|EFO56435.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|324019561|gb|EGB88780.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|331071054|gb|EGI42413.1| fimbriae Z protein [Escherichia coli TA280] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 155 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|170681356|ref|YP_001742679.1| transcriptional regulator FimZ [Escherichia coli SMS-3-5] gi|218698902|ref|YP_002406531.1| transcriptional regulator FimZ [Escherichia coli IAI39] gi|170519074|gb|ACB17252.1| fimbriae Z protein [Escherichia coli SMS-3-5] gi|218368888|emb|CAR16638.1| DNA-binding transcriptional regulator, isolated component of a two-component regulator system [Escherichia coli IAI39] gi|284920345|emb|CBG33405.1| fimbrial transcriptional regulator [Escherichia coli 042] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|331651498|ref|ZP_08352518.1| fimbriae Z protein [Escherichia coli M718] gi|331050771|gb|EGI22828.1| fimbriae Z protein [Escherichia coli M718] Length = 231 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 230 Query: 234 I 234 I Sbjct: 231 I 231 >gi|157160059|ref|YP_001457377.1| transcriptional regulator FimZ [Escherichia coli HS] gi|170021084|ref|YP_001726038.1| transcriptional regulator FimZ [Escherichia coli ATCC 8739] gi|188496026|ref|ZP_03003296.1| fimbriae Z protein [Escherichia coli 53638] gi|193067761|ref|ZP_03048728.1| fimbriae Z protein [Escherichia coli E110019] gi|194437417|ref|ZP_03069514.1| fimbriae Z protein [Escherichia coli 101-1] gi|218553099|ref|YP_002386012.1| transcriptional regulator FimZ [Escherichia coli IAI1] gi|218703819|ref|YP_002411338.1| transcriptional regulator FimZ [Escherichia coli UMN026] gi|253774477|ref|YP_003037308.1| transcriptional regulator FimZ [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160603|ref|YP_003043711.1| transcriptional regulator FimZ [Escherichia coli B str. REL606] gi|256023848|ref|ZP_05437713.1| transcriptional regulator FimZ [Escherichia sp. 4_1_40B] gi|293403656|ref|ZP_06647747.1| fimbriae expression FimZ transcriptional regulator [Escherichia coli FVEC1412] gi|293413791|ref|ZP_06656440.1| hypothetical protein ECDG_00336 [Escherichia coli B185] gi|298379266|ref|ZP_06989147.1| fimbriae expression FimZ transcriptional regulator [Escherichia coli FVEC1302] gi|312970632|ref|ZP_07784813.1| response regulator [Escherichia coli 1827-70] gi|157065739|gb|ABV04994.1| fimbriae Z protein [Escherichia coli HS] gi|169756012|gb|ACA78711.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|188491225|gb|EDU66328.1| fimbriae Z protein [Escherichia coli 53638] gi|192959173|gb|EDV89609.1| fimbriae Z protein [Escherichia coli E110019] gi|194423586|gb|EDX39576.1| fimbriae Z protein [Escherichia coli 101-1] gi|218359867|emb|CAQ97409.1| DNA-binding transcriptional regulator, isolated component of a two-component regulator system [Escherichia coli IAI1] gi|218430916|emb|CAR11790.1| DNA-binding transcriptional regulator, isolated component of a two-component regulator system [Escherichia coli UMN026] gi|242376314|emb|CAQ31007.1| FimZ transcriptional regulator [Escherichia coli BL21(DE3)] gi|253325521|gb|ACT30123.1| two component transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972504|gb|ACT38175.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253976714|gb|ACT42384.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|291429509|gb|EFF02529.1| fimbriae expression FimZ transcriptional regulator [Escherichia coli FVEC1412] gi|291433849|gb|EFF06822.1| hypothetical protein ECDG_00336 [Escherichia coli B185] gi|298280379|gb|EFI21883.1| fimbriae expression FimZ transcriptional regulator [Escherichia coli FVEC1302] gi|309700797|emb|CBJ00094.1| fimbrial transcriptional regulator [Escherichia coli ETEC H10407] gi|310337281|gb|EFQ02419.1| response regulator [Escherichia coli 1827-70] gi|332341899|gb|AEE55233.1| transcriptional regulator FimZ [Escherichia coli UMNK88] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|83647758|ref|YP_436193.1| response regulator [Hahella chejuensis KCTC 2396] gi|83635801|gb|ABC31768.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 223 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAARNLTERE 178 + L G++ +S + + + I + ++T R+ Sbjct: 106 LSLRSGAIGFISKSSSAMEINLAIRQILNGKQYVPNFYIHRNQTPVQDSQLRLDSITPRQ 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL G ++ I +L L+ TV ++L + + L+ NR + ++ A R + Sbjct: 166 MEVLQLLAKGLPNKRICSELSLTEDTVKSHLKALFMHLNVHNRTECVSVATRLHLV 221 >gi|15829851|ref|NP_308624.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. Sakai] gi|16128519|ref|NP_415068.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|89107402|ref|AP_001182.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|157157441|ref|YP_001461723.1| transcriptional regulator FimZ [Escherichia coli E24377A] gi|168747779|ref|ZP_02772801.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4113] gi|168754650|ref|ZP_02779657.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4401] gi|168760301|ref|ZP_02785308.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4501] gi|168774612|ref|ZP_02799619.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4196] gi|168779039|ref|ZP_02804046.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4076] gi|168786397|ref|ZP_02811404.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC869] gi|168798110|ref|ZP_02823117.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC508] gi|170080118|ref|YP_001729438.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|191168110|ref|ZP_03029908.1| fimbriae Z protein [Escherichia coli B7A] gi|193064132|ref|ZP_03045216.1| fimbriae Z protein [Escherichia coli E22] gi|194429573|ref|ZP_03062093.1| fimbriae Z protein [Escherichia coli B171] gi|194432765|ref|ZP_03065050.1| fimbriae Z protein [Shigella dysenteriae 1012] gi|195936102|ref|ZP_03081484.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. EC4024] gi|208805821|ref|ZP_03248158.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4206] gi|208816194|ref|ZP_03257373.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4045] gi|208822823|ref|ZP_03263141.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4042] gi|209400942|ref|YP_002269188.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4115] gi|217325589|ref|ZP_03441673.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|218693998|ref|YP_002401665.1| transcriptional regulator FimZ [Escherichia coli 55989] gi|238899816|ref|YP_002925612.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|254791723|ref|YP_003076560.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. TW14359] gi|256020506|ref|ZP_05434371.1| transcriptional regulator FimZ [Shigella sp. D9] gi|260853751|ref|YP_003227642.1| putative DNA-binding transcriptional regulator FimZ [Escherichia coli O26:H11 str. 11368] gi|260866691|ref|YP_003233093.1| putative DNA-binding transcriptional regulator FimZ [Escherichia coli O111:H- str. 11128] gi|261224023|ref|ZP_05938304.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261257717|ref|ZP_05950250.1| putative DNA-binding transcriptional regulator FimZ [Escherichia coli O157:H7 str. FRIK966] gi|307137178|ref|ZP_07496534.1| transcriptional regulator FimZ [Escherichia coli H736] gi|307314549|ref|ZP_07594151.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|331641057|ref|ZP_08342192.1| fimbriae Z protein [Escherichia coli H736] gi|331676205|ref|ZP_08376917.1| fimbriae Z protein [Escherichia coli H591] gi|84028127|sp|P0AEL9|FIMZ_ECO57 RecName: Full=Fimbriae Z protein gi|84028128|sp|P0AEL8|FIMZ_ECOLI RecName: Full=Fimbriae Z protein gi|1786747|gb|AAC73637.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|13360055|dbj|BAB34020.1| fimbrial Z protein [Escherichia coli O157:H7 str. Sakai] gi|85674672|dbj|BAE76312.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|157079471|gb|ABV19179.1| fimbriae Z protein [Escherichia coli E24377A] gi|169887953|gb|ACB01660.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|187769670|gb|EDU33514.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4196] gi|188017691|gb|EDU55813.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4113] gi|189002953|gb|EDU71939.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4076] gi|189358004|gb|EDU76423.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4401] gi|189369175|gb|EDU87591.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4501] gi|189373564|gb|EDU91980.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC869] gi|189379352|gb|EDU97768.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC508] gi|190901840|gb|EDV61591.1| fimbriae Z protein [Escherichia coli B7A] gi|192929161|gb|EDV82771.1| fimbriae Z protein [Escherichia coli E22] gi|194412370|gb|EDX28672.1| fimbriae Z protein [Escherichia coli B171] gi|194419027|gb|EDX35111.1| fimbriae Z protein [Shigella dysenteriae 1012] gi|208725622|gb|EDZ75223.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4206] gi|208732842|gb|EDZ81530.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4045] gi|208737016|gb|EDZ84700.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4042] gi|209162342|gb|ACI39775.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4115] gi|217321810|gb|EEC30234.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|218350730|emb|CAU96422.1| DNA-binding transcriptional regulator, isolated component of a two-component regulator system [Escherichia coli 55989] gi|238862256|gb|ACR64254.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|254591123|gb|ACT70484.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|257752400|dbj|BAI23902.1| predicted DNA-binding transcriptional regulator FimZ [Escherichia coli O26:H11 str. 11368] gi|257763047|dbj|BAI34542.1| predicted DNA-binding transcriptional regulator FimZ [Escherichia coli O111:H- str. 11128] gi|260450282|gb|ACX40704.1| two component transcriptional regulator, LuxR family [Escherichia coli DH1] gi|306905867|gb|EFN36390.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|315059808|gb|ADT74135.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|315135217|dbj|BAJ42376.1| transcriptional regulator FimZ [Escherichia coli DH1] gi|315616525|gb|EFU97142.1| response regulator [Escherichia coli 3431] gi|320180118|gb|EFW55059.1| transcriptional regulator FimZ [Shigella boydii ATCC 9905] gi|320192960|gb|EFW67600.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. EC1212] gi|320638314|gb|EFX08039.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. G5101] gi|320643718|gb|EFX12848.1| transcriptional regulator FimZ [Escherichia coli O157:H- str. 493-89] gi|320649034|gb|EFX17621.1| transcriptional regulator FimZ [Escherichia coli O157:H- str. H 2687] gi|320654612|gb|EFX22617.1| transcriptional regulator FimZ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320665092|gb|EFX32189.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. LSU-61] gi|323153441|gb|EFZ39696.1| response regulator [Escherichia coli EPECa14] gi|323160888|gb|EFZ46813.1| response regulator [Escherichia coli E128010] gi|323178192|gb|EFZ63770.1| response regulator [Escherichia coli 1180] gi|323943154|gb|EGB39311.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323945200|gb|EGB41260.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323972188|gb|EGB67400.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|324116773|gb|EGC10687.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|326341308|gb|EGD65100.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. 1044] gi|326345915|gb|EGD69654.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. 1125] gi|331037855|gb|EGI10075.1| fimbriae Z protein [Escherichia coli H736] gi|331076263|gb|EGI47545.1| fimbriae Z protein [Escherichia coli H591] gi|332094215|gb|EGI99266.1| response regulator [Shigella boydii 5216-82] gi|332097292|gb|EGJ02273.1| response regulator [Shigella dysenteriae 155-74] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|41810|emb|CAA35973.1| fimZ [Escherichia coli] gi|1778450|gb|AAB40733.1| fimbriae Z protein [Escherichia coli] Length = 231 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 230 Query: 234 I 234 I Sbjct: 231 I 231 >gi|15800272|ref|NP_286284.1| transcriptional regulator FimZ [Escherichia coli O157:H7 EDL933] gi|332281688|ref|ZP_08394101.1| transcriptional regulator FimZ [Shigella sp. D9] gi|25298730|pir||H85553 fimbrial Z protein, probable signal transducer [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12513435|gb|AAG54892.1|AE005234_8 fimbrial Z protein; probable signal transducer [Escherichia coli O157:H7 str. EDL933] gi|209777788|gb|ACI87206.1| fimbrial Z protein [Escherichia coli] gi|209777790|gb|ACI87207.1| fimbrial Z protein [Escherichia coli] gi|209777792|gb|ACI87208.1| fimbrial Z protein [Escherichia coli] gi|209777796|gb|ACI87210.1| fimbrial Z protein [Escherichia coli] gi|323379624|gb|ADX51892.1| two component transcriptional regulator, LuxR family [Escherichia coli KO11] gi|332104040|gb|EGJ07386.1| transcriptional regulator FimZ [Shigella sp. D9] Length = 231 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A + Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 230 Query: 234 I 234 I Sbjct: 231 I 231 >gi|83749981|ref|ZP_00946930.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551] gi|83723351|gb|EAP70580.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551] Length = 263 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 11/201 (5%) Query: 36 YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95 + + ++ ++ + + + + P+ + Sbjct: 51 VCSHGRITAAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAA 107 Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--------NEVII 147 + + + +A V H G + + ++ Sbjct: 108 APVAEIDRGWLAKFIAYDLRNAVADGVYDEGHCIGTYFSFHRLVSVNEPFLASVLRDLTP 167 Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H + + D + + L+ERE G G ++ EIA +S +TV Sbjct: 168 VLHRTLMRAVADTEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQ 227 Query: 208 YLGSATVKLDAVNRIQAIAKA 228 +L K NR+ A Sbjct: 228 HLKHIMDKTGCANRVGVAVLA 248 >gi|332828196|gb|EGK00908.1| hypothetical protein HMPREF9455_02697 [Dysgonomonas gadei ATCC BAA-286] Length = 216 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E L+ G T++EIA LS HT+ + + KL+ N +AI A+R G Sbjct: 149 LTVTEKEILKEIALGRTTKEIASNRNLSFHTIITHRKNIFRKLEVNNVHEAIKYAMRAGL 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|327459203|gb|EGF05551.1| two component system response regulator [Streptococcus sanguinis SK1057] Length = 227 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +++ E +Q G G +++E+A KL LS TV YL KL+ +R Q A++ Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEVAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|312959247|ref|ZP_07773765.1| two component transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311286507|gb|EFQ65070.1| two component transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 148 ERLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRN 207 Query: 232 GYI 234 G + Sbjct: 208 GLV 210 >gi|302535539|ref|ZP_07287881.1| two component system response regulator [Streptomyces sp. C] gi|302444434|gb|EFL16250.1| two component system response regulator [Streptomyces sp. C] Length = 221 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + R A L+ERE L L G+G ++ + +L +S TV Y+ KL NR Sbjct: 151 RGEEARRRVAE-LSERERGVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKLGCENR 209 Query: 222 IQAIAKAIRFGY 233 +QA A G Sbjct: 210 VQAALLARDAGL 221 >gi|302519163|ref|ZP_07271505.1| two component transcriptional regulator [Streptomyces sp. SPB78] gi|302428058|gb|EFK99873.1| two component transcriptional regulator [Streptomyces sp. SPB78] Length = 235 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%) Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +V+ E ++ + + L+ RE L L G G T+ +IAE+L L+ Sbjct: 138 RMTSRVMARIREPEPEKPAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEK 197 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TV + S KL RIQA A R Sbjct: 198 TVKNRVSSILGKLGVGRRIQAAMIAERL 225 >gi|297162710|gb|ADI12422.1| putative luxR family two-component response regulator [Streptomyces bingchenggensis BCW-1] Length = 233 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 37/80 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 GA +V+ L+ RE L+L G+G T+ +IAE+L L+ TV + Sbjct: 146 GATARVMARLRGPQPSGPVELERLSPREREILELIGEGLTNRQIAERLFLAEKTVKNRIS 205 Query: 211 SATVKLDAVNRIQAIAKAIR 230 + KL RIQA A R Sbjct: 206 TILSKLGVGRRIQAAVIAER 225 >gi|283785659|ref|YP_003365524.1| response regulator [Citrobacter rodentium ICC168] gi|282949113|emb|CBG88720.1| response regulator [Citrobacter rodentium ICC168] Length = 218 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 129 IAQQMALSQIEPEKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209 >gi|212633209|ref|YP_002309734.1| regulatory protein LuxR:response regulator receiver [Shewanella piezotolerans WP3] gi|212554693|gb|ACJ27147.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella piezotolerans WP3] Length = 188 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + L ++E LQLAG+G ++ EIA L ++ TV YL A KL A NR Sbjct: 116 ELAIMAVGESDPLNDKERKALQLAGEGKSTSEIAAMLFIAEGTVRNYLSEAISKLHATNR 175 Query: 222 IQAIAKAIRFGYI 234 I A A + G++ Sbjct: 176 IDAARIAQQKGWL 188 >gi|319902814|ref|YP_004162542.1| transcriptional regulator [Bacteroides helcogenes P 36-108] gi|319417845|gb|ADV44956.1| transcriptional regulator [Bacteroides helcogenes P 36-108] Length = 220 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT E S L+ G T++EIA + LS HTVN++ + KL N +A A++ Sbjct: 151 DLLTAAERSILKEIALGKTTKEIAAEKNLSFHTVNSHRKNIFRKLSVNNAHEATKYAMKA 210 Query: 232 GYI 234 G + Sbjct: 211 GIV 213 >gi|290475675|ref|YP_003468564.1| putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004] gi|289174997|emb|CBJ81800.1| putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004] Length = 219 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+ L LS TVN+Y KL+ Sbjct: 133 MALDQLSPPKENPLAELSERELQIMTMITQGRKVNEISTLLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 IKGDVELTHMAIRCGLL 209 >gi|239986838|ref|ZP_04707502.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 215 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G T+ EIA +L + T ++ + K A +R QA+ A G Sbjct: 151 RLTDREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESG 210 Query: 233 YI 234 +I Sbjct: 211 FI 212 >gi|148254242|ref|YP_001238827.1| response regulator FixJ [Bradyrhizobium sp. BTAi1] gi|146406415|gb|ABQ34921.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 205 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 36/96 (37%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 F +IE + + + +L+ RE + G +++ IA Sbjct: 106 PFEDERLVAMIETAIRQAEPAAKNESITQDILGRIASLSPRERQVMDGLMAGLSNKLIAR 165 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + +S T+ Y + K+ A + + + A+R G Sbjct: 166 EYDISPRTIEVYRANVMTKMGANSLSELVRLAMRAG 201 >gi|307322363|ref|ZP_07601723.1| Autoinducer-binding domain protein [Sinorhizobium meliloti AK83] gi|306891981|gb|EFN22807.1| Autoinducer-binding domain protein [Sinorhizobium meliloti AK83] Length = 179 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 8/167 (4%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + + + L + + +A + F + NY + D Sbjct: 15 ARTREMFNGALTELARELGFEYYAYLNLQPVGTFA--------VSNYSPEWQDRYFSKSF 66 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D + S + W S V + G +GI PV F + Sbjct: 67 SEIDPVVQIAKSTMRAFTWSSENTRKVKSRRVRQFYLDAAGFGIRSGITIPVATAFRRIA 126 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + S L + I+ A V + + + + + R Sbjct: 127 MLTIASHKPCLLLNLDIDPVAAATAVAQLHVRIEQAQIEPTAKPSIR 173 >gi|229589739|ref|YP_002871858.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361605|emb|CAY48483.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 218 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 37/98 (37%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G F + + +V+ + + +LT R+ L L G Sbjct: 104 QGADGFIGKNVDPTGIAEAIMAIREGEVVVKYNPENPLLDPSLSSLTARQKQVLGLIAAG 163 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 T++EIA +LG+S TV ++ + L R A A Sbjct: 164 KTNKEIARQLGISPFTVRIHVSTLFKTLGVPTRAAAAA 201 >gi|256375752|ref|YP_003099412.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920055|gb|ACU35566.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 214 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 151 GACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ + + L+ RE L+L DG + IA +LGLS TV +Y+ Sbjct: 129 RIAARLLPRLRAGRLLRPNPQLDALSTRERQVLELLSDGLPNAAIATELGLSEATVKSYV 188 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 + +KL NR+QA A + G Sbjct: 189 STVLMKLGVENRVQAALAAHQVG 211 >gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 309 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 25/142 (17%) Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 W +E+ E G +++ G+ N ++ + ++++ + Sbjct: 188 WMREREKGTGERHGSFTLQRAAQ----TGLQISYLGAIGANEFLFRLTTENGMSDDETLR 243 Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H LT RE+ L G ++ +I E LGLS TV + Sbjct: 244 QHF---------------------QLTPRESEVLLWIAKGKSNRDIGEILGLSSRTVTKH 282 Query: 209 LGSATVKLDAVNRIQAIAKAIR 230 L VKL NR A KA + Sbjct: 283 LEQIYVKLGVENRASAAVKATQ 304 >gi|254239749|ref|ZP_04933071.1| hypothetical protein PA2G_00374 [Pseudomonas aeruginosa 2192] gi|126193127|gb|EAZ57190.1| hypothetical protein PA2G_00374 [Pseudomonas aeruginosa 2192] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 9/145 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF------HKNGYVIFTSEFLMLANEV 145 + + ++ L I + G F + + Sbjct: 55 LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114 Query: 146 IIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V+ + L + S LTER+ L+L G +++EI L +S Sbjct: 115 RAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 +TV ++ S LD +R A K Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199 >gi|307330274|ref|ZP_07609421.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884071|gb|EFN15110.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 233 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L+ERE L+L DG ++ EIA ++ + TV ++G+ KL +R Q Sbjct: 160 EASARALGERLSEREAVVLRLMTDGLSNSEIAARMAVGPATVKTHVGAVLTKLGVRDRTQ 219 Query: 224 AIAKAIRFGYI 234 A+ A G++ Sbjct: 220 AVIAAYESGFV 230 >gi|300716154|ref|YP_003740957.1| Response regulator protein [Erwinia billingiae Eb661] gi|299061990|emb|CAX59106.1| Response regulator protein [Erwinia billingiae Eb661] Length = 219 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S +L+ERE + + G +I+E+L LS TVN+Y KL+ ++ A Sbjct: 145 SPFDSLSERELQIMLMITKGQKVADISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLA 204 Query: 229 IRFGY 233 IR G Sbjct: 205 IRHGL 209 >gi|296167213|ref|ZP_06849619.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897454|gb|EFG77054.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 238 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+L +G ++ I E+L +S +T ++ + VK A NR QA A Sbjct: 175 DGLTEREVEVLRLLAEGLSNRAIGERLFISTNTAANHVRNILVKTGAANRTQAAMYAADH 234 Query: 232 GYI 234 + Sbjct: 235 ELL 237 >gi|292490863|ref|YP_003526302.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291579458|gb|ADE13915.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 213 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 7/119 (5%) Query: 118 IAFPVRLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQV---ITDFLELFKKRSSA 170 I + N++++E ++ + + ++ + Sbjct: 83 IFISAHGSVPDAVGALHGGAIDFLMKPFDNQILLERIERSIKLDRKRRETRQQQEEIAQR 142 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE ++L G ++ +A +LG+S TV + KL+A N I A Sbjct: 143 VAQLTSRERQVMELIVKGKPNKVVAIELGISTKTVEIHRARVMEKLEAKNLADLIHLAR 201 >gi|188533225|ref|YP_001907022.1| Nitrate/nitrite response regulator protein NarP [Erwinia tasmaniensis Et1/99] gi|188028267|emb|CAO96125.1| Nitrate/nitrite response regulator protein NarP [Erwinia tasmaniensis Et1/99] Length = 210 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 2/113 (1%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAARNLTER 177 F V GY++ S+ L ++I+ A G + L K + LT R Sbjct: 95 FTVLREAGVKGYLLKNSDPETLLAQIIVVAEGGVAYSPGLEAPDALDKWIHNPLAILTVR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E ++ G +++IAE L +S TV ++ S KL +R+ A + Sbjct: 155 EQEVMREVASGLANKQIAEMLAISEQTVKVHIRSVLRKLHVRSRVAATVLWLE 207 >gi|109898298|ref|YP_661553.1| two component LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700579|gb|ABG40499.1| two component transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 213 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIA 195 E++ +++ ++ + A LT + LQL DG +++IA Sbjct: 114 DAVRELLEGEQWLPNELVEQVQKIEDSQEQAFAGKLAQLTPHQLKVLQLMADGLLNKQIA 173 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LG+S T+ ++ + KL NR QA Sbjct: 174 YELGVSESTIKQHVSAVLHKLGFNNRTQA 202 >gi|332527516|ref|ZP_08403568.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111923|gb|EGJ11901.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 214 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query: 152 ACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ F + K ++S LT+RE+ L GYT EI +LGLS HT+ Y+ Sbjct: 129 IARRMMAHFTQKAKPQTSLLPHVQLTDRESEVLLRVAKGYTLPEIGVQLGLSRHTIADYV 188 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL+ +R +A +A R G Sbjct: 189 KQIYRKLNVSSRAEAALEAQRLGL 212 >gi|291007043|ref|ZP_06565016.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 198 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 12/170 (7%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI------AFPVRLGFH 127 D +F +S ++ Q + L A + P Sbjct: 32 DVVVFAADSVTSEVLADLRQSAQRVSVPRVLVTNELNPANVLAAVESRVVAVLPRTAATG 91 Query: 128 KN---GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + S ++ +++ E + + L R A LT RE L+L Sbjct: 92 ARLINSVLAAASGGGVMPPDLLGELLKQVDYLQREVLT---PRGLNASGLTTREIDVLRL 148 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG + EIA+KL S TV + T +L+ NR A+A A+R G I Sbjct: 149 MADGLDTAEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGVI 198 >gi|226310881|ref|YP_002770775.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226093829|dbj|BAH42271.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 602 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 30/64 (46%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE LQ+ G + IA KL LS TV Y + KL NR A+ K Sbjct: 539 AYGLTKREQEILQMLAQGMRYKTIASKLYLSDGTVRNYASALYDKLGVRNRDDAVQKGKM 598 Query: 231 FGYI 234 G + Sbjct: 599 EGLV 602 >gi|92115904|ref|YP_575633.1| two component LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91798798|gb|ABE61173.1| two component transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 231 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L + LT ++ L + +G +++IA +LG+S T+ A++ + Sbjct: 143 LSAAADPEMTRLRDRLV----TLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSA 198 Query: 212 ATVKLDAVNRIQAIAKAIR 230 KL +R QA+ A R Sbjct: 199 ILQKLGVDSRTQAVIAAAR 217 >gi|288927298|ref|ZP_06421145.1| transcriptional regulator [Prevotella sp. oral taxon 317 str. F0108] gi|288330132|gb|EFC68716.1| transcriptional regulator [Prevotella sp. oral taxon 317 str. F0108] Length = 210 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+ E L+ G T++EIAEK S HTVN + + KL+ N +A A+R G Sbjct: 142 KLTKTEMEVLRDIALGLTTKEIAEKRFSSFHTVNTHRKNIFRKLNVNNVHEATKYALRAG 201 Query: 233 YI 234 + Sbjct: 202 MV 203 >gi|255531519|ref|YP_003091891.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255344503|gb|ACU03829.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 210 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RET L L G +IA +L + + TV ++ + +KLD ++ AI A Sbjct: 146 PDSPLTKRETQILSLMSRGKDRSQIANELFIEIETVKTHIKNIYLKLDVNSKADAIKVAK 205 Query: 230 RFGYI 234 + Sbjct: 206 NNRLV 210 >gi|126740015|ref|ZP_01755705.1| transcriptional regulator, LuxR family/sensory box protein [Roseobacter sp. SK209-2-6] gi|126718834|gb|EBA15546.1| transcriptional regulator, LuxR family/sensory box protein [Roseobacter sp. SK209-2-6] Length = 211 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + F +L ++R + LT RE L G+G TS+EIA L LS TV + GS Sbjct: 120 RAVWSFADLSEQR--PYQPLTRREREVYSLLGEGQTSKEIARTLNLSYRTVEVHRGSLLK 177 Query: 215 KLDAVNRIQA 224 K+ N Sbjct: 178 KMGVSNTAAL 187 >gi|154687277|ref|YP_001422438.1| ComA [Bacillus amyloliquefaciens FZB42] gi|126362996|emb|CAM35814.1| two-component response regulator ComA [Bacillus amyloliquefaciens FZB42] gi|154353128|gb|ABS75207.1| ComA [Bacillus amyloliquefaciens FZB42] Length = 214 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 40/89 (44%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L +++++ + + S LT RE LQ G T++EIA+ L Sbjct: 120 VLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALH 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LS ++ L S KL+ +R +A+ A Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIA 208 >gi|60680121|ref|YP_210265.1| LuxR family transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|265765259|ref|ZP_06093534.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16] gi|60491555|emb|CAH06307.1| putative LuxR family transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|263254643|gb|EEZ26077.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16] Length = 199 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 38/90 (42%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I++ H + ++ + L+ RE L L G ++EIA+KL + + T Sbjct: 105 DILKLHQHAHHDGYPVKDMPPTPPTTGHELSAREIEVLVLITKGLINKEIADKLNIGLTT 164 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V + + T KL + A+ GY+ Sbjct: 165 VITHRKNITEKLGIKSVSGLTIYAVMNGYV 194 >gi|319795599|ref|YP_004157239.1| autoinducer-binding domain protein [Variovorax paradoxus EPS] gi|315598062|gb|ADU39128.1| Autoinducer-binding domain protein [Variovorax paradoxus EPS] Length = 377 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 65/248 (26%), Gaps = 38/248 (15%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD-LDSGDIPNILIETYGDDFLF 78 RL L++ ++ F + + L +Y D + D Sbjct: 124 RLSLVKQALRQNGFEWLAYGTLRPRNGGLHPMRFLSSYAHQDWAEHYFAHGFHEVDVRHK 183 Query: 79 HFNSGLLPIIWQSIQEETVIESS------------GQLSVRLEGGLLPFAGIAFPVRLGF 126 + LP++W E + + +G +RL Sbjct: 184 DAPASGLPLVWDLESLEQAQSRQPLRLDSAETAARQRRFLDDMERHGIRSG--VFLRLAT 241 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-------------------KR 167 L + L + + Sbjct: 242 PGQSGDHTFISCLSRTPSRRWIIQRVTGNALALGLSIHEYVSQHVLAGCAAQASQSPAAD 301 Query: 168 SSAARNL----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L + + + L+ G + +EIA +LGLS + V+ ++ + NR++ Sbjct: 302 GPSNDGLAGLISPTQRAILEELMAGCSDKEIAYRLGLSGYAVDYHMRQLRRRFQVRNRVK 361 Query: 224 AIAKAIRF 231 + A Sbjct: 362 LASVAAAL 369 >gi|158314279|ref|YP_001506787.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158109684|gb|ABW11881.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 211 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 4/114 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTER 177 + G L+ A I +T + + A L R Sbjct: 96 IMAGASGYLLKQIRGNDLVGAIRTIAAGRSLLDPAVTQKVLARLRDEPAEDEQLAALGSR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+L +G T+ +IA + LS TV Y+ + KL +R QA A R Sbjct: 156 ERQILRLIAEGMTNRQIAGCVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARL 209 >gi|307565264|ref|ZP_07627757.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS 21A-A] gi|307345933|gb|EFN91277.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS 21A-A] Length = 214 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C Q +E + LT+ ET L G T++EIA K S HT+N + Sbjct: 124 FVCKQAKEMLIEKESSMCVEQKRLTKTETEILIDIAQGLTTKEIANKRYSSFHTINTHRK 183 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +A A+R G + Sbjct: 184 NIFRKLSVNTAHEATRYALRAGLL 207 >gi|269796113|ref|YP_003315568.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098298|gb|ACZ22734.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 220 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 6/125 (4%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLELFKKRSS 169 + + + + + + + Q + + Sbjct: 101 RAGARGYVTKAISGQELGDAIDRVSGGDAVFSPRLAGFVLDSFGTQAADVAVADDE---- 156 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE ++L GY+ E+A +L +S+ TV ++ + KL +R + A Sbjct: 157 -LDRLSAREQEVMRLIARGYSYREVASELFISIKTVETHVSAVLRKLQLSSRHELTRWAA 215 Query: 230 RFGYI 234 + Sbjct: 216 ARRLL 220 >gi|152970956|ref|YP_001336065.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330001009|ref|ZP_08303869.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] gi|150955805|gb|ABR77835.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328537813|gb|EGF64008.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] Length = 235 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A+ A Q+ +E K S A +L+ERE + + G EI+E+L LS Sbjct: 136 ASGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLS 194 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TVN+Y KL+ ++ AIR G Sbjct: 195 PKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 226 >gi|148273924|ref|YP_001223485.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831854|emb|CAN02824.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 206 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + +L+ RE L+L DG ++ ++A +L ++ TV ++L KL +R Sbjct: 133 RLLARMRAPRVSLSSREIEVLRLVADGASNTDVAARLHITDATVKSHLVHVFSKLGVSSR 192 Query: 222 IQAIAKAIRFGYI 234 A+A A G + Sbjct: 193 TGAVAAARELGVL 205 >gi|85716119|ref|ZP_01047095.1| response regulator FixJ [Nitrobacter sp. Nb-311A] gi|85697118|gb|EAQ35000.1| response regulator FixJ [Nitrobacter sp. Nb-311A] Length = 205 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +S L++RE + G +++ IA + +S T+ Y + K+ A N Sbjct: 132 VSAEIASRLATLSQRERQVMDGLVAGLSNKLIAREHNISPRTIEVYRANVMTKMQAHNLS 191 Query: 223 QAIAKAIRFGYI 234 + I A+R G + Sbjct: 192 ELIRLALRAGIL 203 >gi|124266879|ref|YP_001020883.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124259654|gb|ABM94648.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 240 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 153 CYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V + L+ RE L L +G +++ IA +LG++ TV ++ Sbjct: 154 ATEVHATPPSARDRAVPADPLAQLSARERETLALVAEGCSNKLIARQLGIAEATVKIHVQ 213 Query: 211 SATVKLDAVNRIQAIAKAIRFG 232 + KL +R+ A A R G Sbjct: 214 NLLRKLGLESRVHAAAWYARLG 235 >gi|163787697|ref|ZP_02182144.1| two-component response regulator [Flavobacteriales bacterium ALC-1] gi|159877585|gb|EDP71642.1| two-component response regulator [Flavobacteriales bacterium ALC-1] Length = 217 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L + T+++I+EKL +S TV + + +K A N + I AI G Sbjct: 156 KLTRREHEVLIAISEELTTQQISEKLFISPKTVETHRSNIILKFGAKNSVGIIKMAIENG 215 Query: 233 YI 234 + Sbjct: 216 LL 217 >gi|160873996|ref|YP_001553312.1| LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160859518|gb|ABX48052.1| transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315266225|gb|ADT93078.1| transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 221 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++ + Q + E+ + + LT RE + +Q G ++EIA +L +S Sbjct: 124 DRTLLSKVFRRVVQKLDGNNEMLSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCIS 183 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 HTV A++ S K + NR++ + A Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|89900279|ref|YP_522750.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345016|gb|ABD69219.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 214 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + F +E A I+D + A +L+ RE L G+ Sbjct: 102 AWDFLEKPFQDNELVDRVEQALAAASAISDTDLEVYRLKQALTSLSPREREVLDELIRGH 161 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ IA+ LG++ TV + K+ + A+ A + G Sbjct: 162 YNKTIADHLGITPRTVEFHRSHIFEKMGVSS---AVELAHKLG 201 >gi|170696363|ref|ZP_02887492.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170138691|gb|EDT06890.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 274 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 26/174 (14%) Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L+ Y D + + P + +E V + + + A + Sbjct: 45 RHLLSHYPDLRIAVLTDRISPKAVSELMDEGVRGVVPRETDPCL---IVRAFEMVLLGGH 101 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERETS 180 + +G + L + I +K + L+ R+ Sbjct: 102 YVPSGALPL---KPPLPADTAIR-------------PFDEKSPPPRRVRLSNGLSPRQQQ 145 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ G T++ IA LG+S TV +L S +L A NR A+ A+ G++ Sbjct: 146 IMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 197 >gi|110637589|ref|YP_677796.1| response regulator, positive activator of uhpT transcription [Cytophaga hutchinsonii ATCC 33406] gi|110280270|gb|ABG58456.1| response regulator, positive activator of uhpT transcription [Cytophaga hutchinsonii ATCC 33406] Length = 318 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NLT RE + L YT +EIAE+L +S TV ++ + K + + +AK Sbjct: 256 NLTAREREIIHLLAKAYTYKEIAEELFISDRTVAKHISNIYSKTGVSQKSELLAK 310 >gi|53711893|ref|YP_097885.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46] gi|52214758|dbj|BAD47351.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46] Length = 198 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 38/90 (42%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I++ H + ++ + L+ RE L L G ++EIA+KL + + T Sbjct: 104 DILKLHQHAHHDGYPVKDMPPTPPTTGHELSAREIEVLVLITKGLINKEIADKLNIGLTT 163 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V + + T KL + A+ GY+ Sbjct: 164 VITHRKNITEKLGIKSVSGLTIYAVMNGYV 193 >gi|88854577|ref|ZP_01129244.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88816385|gb|EAR26240.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 206 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + +L++RE L G ++ +A ++ +S T+ ++L KLD +R Sbjct: 133 RLLDRMRAPQISLSKREIEVLDKVAHGKSNAVVASEIFVSETTIKSHLVHIFSKLDVSSR 192 Query: 222 IQAIAKAIRFGYI 234 A+++A G + Sbjct: 193 TAAVSRARELGVL 205 >gi|298247333|ref|ZP_06971138.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549992|gb|EFH83858.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1044 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ +E L+L G ++ EIA +L +S++TV L + KL+ NR++A A + Sbjct: 981 SEALSSQEARVLRLLVAGRSNPEIANELVVSINTVKTQLQNIYRKLNVSNRVEASEAARQ 1040 Query: 231 FGYI 234 + Sbjct: 1041 LKLV 1044 >gi|269469283|gb|EEZ80796.1| hypothetical protein Sup05_1368 [uncultured SUP05 cluster bacterium] Length = 209 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 155 QVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 V+ L S + LT RE G +++ IA +LG+S TV ++ S Sbjct: 128 HVLAKVLRNELTESEPSFEVLTNREKEVACQVSIGSSNKVIARELGISDGTVKLHVKSIL 187 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KL +R++ GY Sbjct: 188 KKLSLSSRVEVAVMVTEKGY 207 >gi|254427282|ref|ZP_05040989.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] gi|196193451|gb|EDX88410.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] Length = 301 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 27/56 (48%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T RE L G T+ EIA+ L LS TVN +L KL NR A A I+ Sbjct: 240 THREAQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVENRTAAAAMVIQ 295 >gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] Length = 309 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 21/219 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI------PNILIETYGDD 75 + ++A T +D R ++ L N L+ GD Sbjct: 97 EHVVRALEAGGVDYLTKPINID-ELRARIRVHLSNARSAQSARVALDAAGRHLLAVRGDG 155 Query: 76 FLFH----FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + + V + E G F ++ Sbjct: 156 TVRWSTPQATRLVNAATGSDDGLAFVAGRIAEWMRERENSPGERQG-TFTLQRASQTGLQ 214 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + + ANE + + L + LT+RE+ L G ++ Sbjct: 215 ISYLGA--IGANEYLFRLTAENGMSDDETLRQHFR-------LTQRESEVLLWIAKGKSN 265 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +I E LGLS TV +L VKL NR A KA + Sbjct: 266 RDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQ 304 >gi|158313275|ref|YP_001505783.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108680|gb|ABW10877.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 218 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++V+ F ++ LTERE L L +G+ + IA L L+ TV + + Sbjct: 135 VAHRVLRTFTSP-PAENAPFPELTEREREVLSLLANGWPNSRIARHLQLTPKTVANNVSN 193 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL A +R AI +A R G Sbjct: 194 ILAKLHAPDRTAAILRARRAGL 215 >gi|332670605|ref|YP_004453613.1| LuxR family ATP-dependent transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339643|gb|AEE46226.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Cellulomonas fimi ATCC 484] Length = 919 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 5/148 (3%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 ++ + E R G+ P + Sbjct: 776 LVASGVAEAAREPRRADALARAAFDEAAAEGVVLPFVRPAPPSVRQPVAR-----VAGAR 830 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 +A A + + + + A LT+RE + L ++ EIA+ L +SV+TV Sbjct: 831 TDALAASVRELIGPQAPVAEPAPLAGALTDRELAVLTALATMQSNAEIADDLFVSVNTVK 890 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A+L S KL+ +R A+ + G + Sbjct: 891 AHLKSLFRKLEVGSRRAAVRRGRELGLL 918 >gi|311108335|ref|YP_003981188.1| sensory box protein 10 [Achromobacter xylosoxidans A8] gi|310763024|gb|ADP18473.1| sensory box protein 10 [Achromobacter xylosoxidans A8] Length = 497 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 5/93 (5%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + VI +L + + LT RE L L G+ + IA +L L Sbjct: 390 MQDTSWFSRSVIEKLAQLREPAPATRDVAELAQLTSREREVLGLMCQGHDDDSIARQLKL 449 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 S +TV ++ + K+ R AI A G Sbjct: 450 SRNTVRNHVATIYSKIGVHRRSAAIVWARDRGI 482 >gi|296130380|ref|YP_003637630.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022195|gb|ADG75431.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 217 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 4/124 (3%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + + + + V + + + A D + Sbjct: 98 RVGARGYVTKAIDPTALSDAVVRVAGGDAVFSPRLAGFVLDAFGAAAGDVATGDDE---- 153 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE ++L G+T E+A +L +S+ TV ++ + KL NR + A Sbjct: 154 LDRLSAREREVMRLIARGFTYREVAGELFISIKTVETHVSAVLRKLQLSNRNELTRWAAA 213 Query: 231 FGYI 234 + Sbjct: 214 RRLL 217 >gi|149375232|ref|ZP_01893004.1| ATP-dependent transcriptional regulator [Marinobacter algicola DG893] gi|149360596|gb|EDM49048.1| ATP-dependent transcriptional regulator [Marinobacter algicola DG893] Length = 907 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L L G +++IA +G++ TV A++ + KL +R +A+AKA Sbjct: 844 EPLSQRELEVLDLINQGLANKDIANTMGVAPTTVKAHIRNLYGKLAVGSRTEALAKAREL 903 Query: 232 GYI 234 + Sbjct: 904 RLL 906 >gi|110680752|ref|YP_683759.1| two-component response regulator, putative [Roseobacter denitrificans OCh 114] gi|109456868|gb|ABG33073.1| two-component response regulator, putative [Roseobacter denitrificans OCh 114] Length = 304 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 4/103 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDG 188 T F + G +++ R S A +LT RE L G Sbjct: 198 SQTRRFSCEDFTLDFLGGGPSGELLLQIARTSNMRPSTYLETAFDLTPREAEVLYWLSMG 257 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+ +IA+ L LS T+N +L K+ NR A A R Sbjct: 258 KTNRDIAQILSLSSRTINKHLEQVFQKMGVDNRTAAAVAADRL 300 >gi|15896192|ref|NP_349541.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025991|gb|AAK80881.1|AE007791_1 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510347|gb|ADZ21983.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 215 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+R+ + G G +++EIAEK ++ TV ++ KL+ +R Q A++ Sbjct: 154 KLTDRQIEIIIAIGSGLSNKEIAEKQYVTEGTVKNHITEILSKLEMRDRTQIAIFALKNE 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|87122320|ref|ZP_01078202.1| transcriptional regulatory protein degu [Marinomonas sp. MED121] gi|86162463|gb|EAQ63746.1| transcriptional regulatory protein degu [Marinomonas sp. MED121] Length = 206 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L+ G ++ IA L +SV TV + + KL + AI Sbjct: 144 EELTKRELAVLKELASGAANKTIANNLSISVRTVETHRQNLKQKLGIHSAAGLTKYAIEH 203 Query: 232 GYI 234 I Sbjct: 204 KLI 206 >gi|134292526|ref|YP_001116262.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135683|gb|ABO56797.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 214 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIHASATASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211 >gi|302539479|ref|ZP_07291821.1| predicted protein [Streptomyces sp. C] gi|302448374|gb|EFL20190.1| predicted protein [Streptomyces sp. C] Length = 92 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ERE L G+G T+++IA +L +SV TV Y+ KL +R Q Sbjct: 31 LSERERVVTGLVGEGRTNQQIAARLDISVKTVETYMSRIFKKLGMNSRTQVAH 83 >gi|300697452|ref|YP_003748113.1| Hrp family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074176|emb|CBJ53721.1| transcription regulator for hrp genes expression [Ralstonia solanacearum CFBP2957] Length = 197 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 41/100 (41%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + + L E G + + LT R+ L+ A Sbjct: 84 EAAGELPSGQLQPLTLEQTYAMLGRILEARRHGCAPRPDTGARLSALTPRQHDILREAAH 143 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ EIA+ L +SV TV +++ ++L+A NR + A Sbjct: 144 GKSNVEIAQTLHISVETVKSHVRQILMRLEARNRTELAAI 183 >gi|299137142|ref|ZP_07030324.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600547|gb|EFI56703.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 210 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 36/89 (40%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I A + + + LT E S L+L G +++IA++L +S T Sbjct: 119 DAIRAVFTGRKTFSIEASSELAEHATDEALTAGEISVLRLIAAGNANKQIADQLSISEDT 178 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V + + KL A +R A I+ G Sbjct: 179 VKGRVKNILSKLGANDRAHAATIGIKRGI 207 >gi|254254816|ref|ZP_04948133.1| DNA-binding response regulator [Burkholderia dolosa AUO158] gi|124899461|gb|EAY71304.1| DNA-binding response regulator [Burkholderia dolosa AUO158] Length = 214 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211 >gi|15802349|ref|NP_288375.1| response regulator [Escherichia coli O157:H7 EDL933] gi|15831906|ref|NP_310679.1| response regulator [Escherichia coli O157:H7 str. Sakai] gi|26248179|ref|NP_754219.1| response regulator [Escherichia coli CFT073] gi|82776406|ref|YP_402755.1| response regulator [Shigella dysenteriae Sd197] gi|91211133|ref|YP_541119.1| response regulator [Escherichia coli UTI89] gi|157161385|ref|YP_001458703.1| response regulator [Escherichia coli HS] gi|168751837|ref|ZP_02776859.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4113] gi|168758223|ref|ZP_02783230.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4401] gi|168777336|ref|ZP_02802343.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4196] gi|168790332|ref|ZP_02815339.1| response regulator UvrY [Escherichia coli O157:H7 str. EC869] gi|191173273|ref|ZP_03034803.1| response regulator UvrY [Escherichia coli F11] gi|195939217|ref|ZP_03084599.1| response regulator [Escherichia coli O157:H7 str. EC4024] gi|208810653|ref|ZP_03252529.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4206] gi|208816650|ref|ZP_03257770.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4045] gi|208819040|ref|ZP_03259360.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4042] gi|209396376|ref|YP_002271026.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4115] gi|215487119|ref|YP_002329550.1| response regulator [Escherichia coli O127:H6 str. E2348/69] gi|217329053|ref|ZP_03445134.1| response regulator UvrY [Escherichia coli O157:H7 str. TW14588] gi|218558772|ref|YP_002391685.1| response regulator [Escherichia coli S88] gi|218689907|ref|YP_002398119.1| response regulator [Escherichia coli ED1a] gi|218699522|ref|YP_002407151.1| response regulator [Escherichia coli IAI39] gi|218705409|ref|YP_002412928.1| response regulator [Escherichia coli UMN026] gi|227885660|ref|ZP_04003465.1| response regulator [Escherichia coli 83972] gi|237705869|ref|ZP_04536350.1| response regulator UvrY [Escherichia sp. 3_2_53FAA] gi|254793564|ref|YP_003078401.1| response regulator [Escherichia coli O157:H7 str. TW14359] gi|260855894|ref|YP_003229785.1| DNA-binding response regulator UvrY in two-component regulatory system with BarA [Escherichia coli O26:H11 str. 11368] gi|261227592|ref|ZP_05941873.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli O157:H7 str. FRIK2000] gi|261255822|ref|ZP_05948355.1| DNA-binding response regulator UvrY in two-component regulatory system with BarA [Escherichia coli O157:H7 str. FRIK966] gi|291283091|ref|YP_003499909.1| Response regulator uvrY [Escherichia coli O55:H7 str. CB9615] gi|293405400|ref|ZP_06649392.1| response regulator [Escherichia coli FVEC1412] gi|293410273|ref|ZP_06653849.1| two component transcriptional [Escherichia coli B354] gi|293415223|ref|ZP_06657866.1| response regulator uvrY [Escherichia coli B185] gi|298381044|ref|ZP_06990643.1| two-component system [Escherichia coli FVEC1302] gi|300899166|ref|ZP_07117445.1| response regulator UvrY [Escherichia coli MS 198-1] gi|300904799|ref|ZP_07122627.1| response regulator UvrY [Escherichia coli MS 84-1] gi|300928944|ref|ZP_07144448.1| response regulator UvrY [Escherichia coli MS 187-1] gi|300935888|ref|ZP_07150845.1| response regulator UvrY [Escherichia coli MS 21-1] gi|300951537|ref|ZP_07165371.1| response regulator UvrY [Escherichia coli MS 116-1] gi|300956572|ref|ZP_07168852.1| response regulator UvrY [Escherichia coli MS 175-1] gi|300982241|ref|ZP_07175953.1| response regulator UvrY [Escherichia coli MS 200-1] gi|300993976|ref|ZP_07180623.1| response regulator UvrY [Escherichia coli MS 45-1] gi|301018237|ref|ZP_07182752.1| response regulator UvrY [Escherichia coli MS 69-1] gi|301050733|ref|ZP_07197591.1| response regulator UvrY [Escherichia coli MS 185-1] gi|301305254|ref|ZP_07211351.1| response regulator UvrY [Escherichia coli MS 124-1] gi|306814262|ref|ZP_07448428.1| response regulator [Escherichia coli NC101] gi|312967115|ref|ZP_07781333.1| response regulator [Escherichia coli 2362-75] gi|331647506|ref|ZP_08348598.1| response regulator UvrY [Escherichia coli M605] gi|331657959|ref|ZP_08358921.1| response regulator UvrY [Escherichia coli TA206] gi|331673432|ref|ZP_08374200.1| response regulator UvrY [Escherichia coli TA280] gi|54039838|sp|P66798|UVRY_ECO57 RecName: Full=Response regulator uvrY gi|54042601|sp|P66797|UVRY_ECOL6 RecName: Full=Response regulator uvrY gi|12516012|gb|AAG56929.1|AE005414_6 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|26108583|gb|AAN80786.1|AE016762_39 UvrY protein [Escherichia coli CFT073] gi|13362120|dbj|BAB36075.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|81240554|gb|ABB61264.1| putative 2-component transcriptional regulator [Shigella dysenteriae Sd197] gi|91072707|gb|ABE07588.1| putative 2-component transcriptional regulator [Escherichia coli UTI89] gi|157067065|gb|ABV06320.1| response regulator UvrY [Escherichia coli HS] gi|187767375|gb|EDU31219.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4196] gi|188014180|gb|EDU52302.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4113] gi|189354916|gb|EDU73335.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4401] gi|189370219|gb|EDU88635.1| response regulator UvrY [Escherichia coli O157:H7 str. EC869] gi|190906390|gb|EDV65999.1| response regulator UvrY [Escherichia coli F11] gi|208725169|gb|EDZ74876.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4206] gi|208730993|gb|EDZ79682.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4045] gi|208739163|gb|EDZ86845.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4042] gi|209157776|gb|ACI35209.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4115] gi|209767048|gb|ACI81836.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209767050|gb|ACI81837.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209767052|gb|ACI81838.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209767054|gb|ACI81839.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209767056|gb|ACI81840.1| putative 2-component transcriptional regulator [Escherichia coli] gi|215265191|emb|CAS09580.1| DNA-binding response regulator UvrY in two-component regulatory system with BarA [Escherichia coli O127:H6 str. E2348/69] gi|217318400|gb|EEC26827.1| response regulator UvrY [Escherichia coli O157:H7 str. TW14588] gi|218365541|emb|CAR03268.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli S88] gi|218369508|emb|CAR17275.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli IAI39] gi|218427471|emb|CAR08367.2| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli ED1a] gi|218432506|emb|CAR13399.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli UMN026] gi|222033655|emb|CAP76396.1| Response regulator uvrY [Escherichia coli LF82] gi|226900626|gb|EEH86885.1| response regulator UvrY [Escherichia sp. 3_2_53FAA] gi|227837233|gb|EEJ47699.1| response regulator [Escherichia coli 83972] gi|254592964|gb|ACT72325.1| DNA-binding response regulator in two-component regulatory system with BarA [Escherichia coli O157:H7 str. TW14359] gi|257754543|dbj|BAI26045.1| DNA-binding response regulator UvrY in two-component regulatory system with BarA [Escherichia coli O26:H11 str. 11368] gi|281178976|dbj|BAI55306.1| two-component response regulator [Escherichia coli SE15] gi|284921827|emb|CBG34900.1| response regulator [Escherichia coli 042] gi|290762964|gb|ADD56925.1| Response regulator uvrY [Escherichia coli O55:H7 str. CB9615] gi|291427608|gb|EFF00635.1| response regulator [Escherichia coli FVEC1412] gi|291432871|gb|EFF05850.1| response regulator uvrY [Escherichia coli B185] gi|291470741|gb|EFF13225.1| two component transcriptional [Escherichia coli B354] gi|294489952|gb|ADE88708.1| response regulator UvrY [Escherichia coli IHE3034] gi|298278486|gb|EFI20000.1| two-component system [Escherichia coli FVEC1302] gi|300297550|gb|EFJ53935.1| response regulator UvrY [Escherichia coli MS 185-1] gi|300307311|gb|EFJ61831.1| response regulator UvrY [Escherichia coli MS 200-1] gi|300316619|gb|EFJ66403.1| response regulator UvrY [Escherichia coli MS 175-1] gi|300357225|gb|EFJ73095.1| response regulator UvrY [Escherichia coli MS 198-1] gi|300399824|gb|EFJ83362.1| response regulator UvrY [Escherichia coli MS 69-1] gi|300403313|gb|EFJ86851.1| response regulator UvrY [Escherichia coli MS 84-1] gi|300406422|gb|EFJ89960.1| response regulator UvrY [Escherichia coli MS 45-1] gi|300449212|gb|EFK12832.1| response regulator UvrY [Escherichia coli MS 116-1] gi|300458938|gb|EFK22431.1| response regulator UvrY [Escherichia coli MS 21-1] gi|300463098|gb|EFK26591.1| response regulator UvrY [Escherichia coli MS 187-1] gi|300839460|gb|EFK67220.1| response regulator UvrY [Escherichia coli MS 124-1] gi|305852421|gb|EFM52872.1| response regulator [Escherichia coli NC101] gi|307553927|gb|ADN46702.1| response regulator UvrY [Escherichia coli ABU 83972] gi|307626609|gb|ADN70913.1| response regulator [Escherichia coli UM146] gi|312288579|gb|EFR16481.1| response regulator [Escherichia coli 2362-75] gi|312946506|gb|ADR27333.1| response regulator [Escherichia coli O83:H1 str. NRG 857C] gi|315257256|gb|EFU37224.1| response regulator UvrY [Escherichia coli MS 85-1] gi|315286613|gb|EFU46046.1| response regulator UvrY [Escherichia coli MS 110-3] gi|315290294|gb|EFU49672.1| response regulator UvrY [Escherichia coli MS 153-1] gi|315296529|gb|EFU55826.1| response regulator UvrY [Escherichia coli MS 16-3] gi|320191887|gb|EFW66534.1| response regulator [Escherichia coli O157:H7 str. EC1212] gi|320194374|gb|EFW69005.1| response regulator [Escherichia coli WV_060327] gi|320641761|gb|EFX11149.1| response regulator [Escherichia coli O157:H7 str. G5101] gi|320647121|gb|EFX15954.1| response regulator [Escherichia coli O157:H- str. 493-89] gi|320652404|gb|EFX20702.1| response regulator [Escherichia coli O157:H- str. H 2687] gi|320658006|gb|EFX25768.1| response regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658578|gb|EFX26272.1| response regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320668476|gb|EFX35303.1| response regulator [Escherichia coli O157:H7 str. LSU-61] gi|323152755|gb|EFZ39027.1| response regulator [Escherichia coli EPECa14] gi|323940423|gb|EGB36614.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323952409|gb|EGB48282.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323956311|gb|EGB52054.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323968330|gb|EGB63737.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|324007282|gb|EGB76501.1| response regulator UvrY [Escherichia coli MS 57-2] gi|324013557|gb|EGB82776.1| response regulator UvrY [Escherichia coli MS 60-1] gi|326342320|gb|EGD66101.1| response regulator [Escherichia coli O157:H7 str. 1044] gi|326344827|gb|EGD68574.1| response regulator [Escherichia coli O157:H7 str. 1125] gi|327253043|gb|EGE64697.1| response regulator [Escherichia coli STEC_7v] gi|330911721|gb|EGH40231.1| barA-associated response regulator UvrY ( GacA SirA) [Escherichia coli AA86] gi|331043230|gb|EGI15368.1| response regulator UvrY [Escherichia coli M605] gi|331056207|gb|EGI28216.1| response regulator UvrY [Escherichia coli TA206] gi|331069630|gb|EGI41017.1| response regulator UvrY [Escherichia coli TA280] gi|332089647|gb|EGI94749.1| response regulator [Shigella boydii 5216-82] Length = 218 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|323961963|gb|EGB57562.1| response regulator receiver domain-containing protein [Escherichia coli H489] Length = 218 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|310643754|ref|YP_003948512.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248704|gb|ADO58271.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 596 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G + I+EKL LS TV Y + KL NR +A+ KA G Sbjct: 534 GLTKRELEVLNLLSQGNRYKTISEKLYLSNGTVRNYASTLYDKLGVNNREEAVQKARDTG 593 Query: 233 YI 234 + Sbjct: 594 LL 595 >gi|289642641|ref|ZP_06474782.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507550|gb|EFD28508.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 228 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 15/159 (9%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE---------- 137 + S + + G + I Sbjct: 68 DVAILDARLPDGSGIDVCRDIRSGTSEVPCLILTSHDDDEALFAAIMAGAAGYVLKQIRG 127 Query: 138 -FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL----TERETSCLQLAGDGYTSE 192 L+ A + +T + + + L +ERE L L +G T+ Sbjct: 128 NDLIGAVRTVASGQSMLDPAVTQRVLTRLRDGAPEDRLLSTLSERERQILGLIAEGLTNR 187 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +IA ++ L+ TV + S KL +R QA A + Sbjct: 188 QIASRIHLAEKTVKNNVSSILEKLGLTSRTQAAVFATKL 226 >gi|257095255|ref|YP_003168896.1| two component LuxR family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047779|gb|ACV36967.1| two component transcriptional regulator, LuxR family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 216 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 13/145 (8%) Query: 103 QLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLAN--EVIIEAHGACY 154 + R+ A + + V + G + F ++ + + I Sbjct: 70 EAIRRIRSRDPQAAILVYTVHNSRVLLERALEAGALGFVTKGSDIDTLLQAIKRIASRES 129 Query: 155 QVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 V D L R A LT+RE +L +G+ E A+ L LS TV+ + Sbjct: 130 FVSPDMLPALLDRHFPAGGVSFDRLTQREFQVFKLLSEGHALPECADILNLSSKTVSNHF 189 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL + + AIR G + Sbjct: 190 TQIRAKLGVDSPAEMARIAIRQGLV 214 >gi|149187165|ref|ZP_01865463.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148838701|gb|EDL55640.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 225 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE ++L G+G ++ +IAE L +S +TV A+L + K+ NR+QA+ A Sbjct: 160 KLTRREQEIIKLLGNGASNTQIAETLFVSENTVKAHLHNTFKKIKVNNRLQALIWA 215 >gi|150375868|ref|YP_001312464.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030415|gb|ABR62531.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 264 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 48/212 (22%), Gaps = 27/212 (12%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 I R+ + Y + + D F ++ I Sbjct: 44 ITVTRYSATRRPEFIKHRGYSDEMVARYLDTYYVF-DPFYAYWRLTRRAGIVPLKSLADG 102 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 G+ + + G + M ++ + G V Sbjct: 103 APKRGRYIAEFLAQSEICDEVGILLEDGDDWCLGIFLDRSTSMFSDGEVAALSGRFP-VF 161 Query: 158 TDFLELFKKRSSA-------------------------ARNLTERETSCLQLAGDGYTSE 192 + LT RE + L G+ + Sbjct: 162 EALHATDTRTRDPNLRRTSMPEAMGEAPVNAVQASLILWPGLTARERELVDLILQGHPNA 221 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 IA +LG++ TV + KLD + Sbjct: 222 TIASRLGIAPGTVKNHRARIYEKLDITTEREL 253 >gi|127513542|ref|YP_001094739.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126638837|gb|ABO24480.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 222 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 SS +L+ R+ L + DG +++IA +LGLS T+ A+ + +KL R QA+ Sbjct: 145 SSKIASLSPRQHKILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRTQAVI 203 >gi|319780810|ref|YP_004140286.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166698|gb|ADV10236.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 268 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 60/236 (25%), Gaps = 30/236 (12%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + ++ ++ + ++ A P + D F Sbjct: 27 QALVEWLRQHVRFDHCVIFGYRGASRPPL--LFETFSPTESHVFVALYQEGPYLL-DPFH 83 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF--- 134 W+ + + + + F V L + Sbjct: 84 HAAVERKEGF-WRMRELAPDRFYASEYFRSYYSQTRLAEEVGFFVPLPGKDALVLSLMRL 142 Query: 135 --TSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAAR----------------- 172 + F ++ + A ++ L + + Sbjct: 143 RASGPFGTADARLLRDMAPAVISFIRLRWPALPADETAEAKQDETAAMVNEFDRAHIWQS 202 Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RE + L G+++E IA + + TV + + KL ++ A+ Sbjct: 203 LSLTPREKHVVDLVLQGHSTESIARAMRIVPGTVKVHRRNIYRKLKIKSQAGLFAR 258 >gi|314987054|gb|EFT31146.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] Length = 218 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----------L 174 +G+++ + L + + A G + L N L Sbjct: 99 AGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPPLPNDPKAADKRLSVL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G + Sbjct: 159 TDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL 218 >gi|237800190|ref|ZP_04588651.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023047|gb|EGI03104.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] Length = 135 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 62 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 121 Query: 224 AIAKAIRF 231 A + Sbjct: 122 AALLLQQL 129 >gi|89894842|ref|YP_518329.1| hypothetical protein DSY2096 [Desulfitobacterium hafniense Y51] gi|219669285|ref|YP_002459720.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89334290|dbj|BAE83885.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539545|gb|ACL21284.1| transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 74 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +NLT RE +L GYT +EIA+ L +S TV +L + KL + ++ I R Sbjct: 14 KNLTYREKEISKLRIQGYTRKEIADILNISHFTVKKHLENIYKKLGIASVVELIKLVYR 72 >gi|13474731|ref|NP_106300.1| two-component system, response regulator [Mesorhizobium loti MAFF303099] gi|14025486|dbj|BAB52086.1| two-component system, response regulator [Mesorhizobium loti MAFF303099] Length = 219 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT ++T L + +G +++IA +LG+S T+ A++ + KL +R QA+ Sbjct: 149 RLQALTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLS 208 Query: 230 RFG 232 + G Sbjct: 209 KIG 211 >gi|222098587|ref|YP_002532645.1| two-component response regulator [Bacillus cereus Q1] gi|221242646|gb|ACM15356.1| two-component response regulator [Bacillus cereus Q1] Length = 217 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L KR+S+ +T++E L+ G ++++IA++L +S V L K +R Sbjct: 142 LDTKRASSHVTITQKELEILESIAKGKSNKQIADELYMSSRAVEYNLTKLFKKFKVSSRS 201 Query: 223 QAIAKAIRFGYI 234 +A+A+A+R G I Sbjct: 202 EALAEAVRKGII 213 >gi|254284313|ref|ZP_04959281.1| transcriptional regulator, LuxR family protein [gamma proteobacterium NOR51-B] gi|219680516|gb|EED36865.1| transcriptional regulator, LuxR family protein [gamma proteobacterium NOR51-B] Length = 248 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 57/245 (23%), Gaps = 44/245 (17%) Query: 18 SPRLHLIQNRIKARNFAL--YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 L ++ I A + ++ Q D Sbjct: 6 QEALTFMERAIGASSSVYGHLRLSQQQVHISEGQERGVPAGAMARWCA-----GYHRQDP 60 Query: 76 FLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 F+ ++ +I S + + + + +R Sbjct: 61 FMRSYLTCLSTSPRNVIVSSEVISHHDYVATRFYNEFLKPQSIYHVMIVGLRPS--GRVP 118 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------------------- 172 A ++ L +R A Sbjct: 119 FGIIGLHRPAEERGFSRLEIAKADLMAPCLRGAVERIQARELLSQHDPLQPGGVDVVDTD 178 Query: 173 ------------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+ RE ++L G +S IA++L +S TVN +L S K N Sbjct: 179 SSITMERRMKRFGLSRREKQVVELLRQGLSSLHIADQLNISARTVNNHLRSVYDKCGVHN 238 Query: 221 RIQAI 225 R I Sbjct: 239 RTALI 243 >gi|330954288|gb|EGH54548.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae Cit 7] Length = 190 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +A LT R+ L L G T++EIA+ LG+S TV ++ S L R Sbjct: 119 FNESAVNALSPLTARQKQVLGLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRA 178 Query: 223 QAIA 226 A A Sbjct: 179 AAAA 182 >gi|312197458|ref|YP_004017519.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228794|gb|ADP81649.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 206 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 36/85 (42%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A Q + L + L RE L L +G T+ +IA ++ LS TV Sbjct: 119 RSLLDPAVTQRVLTRLREGPTQDPKLAALGTREREILHLVAEGLTNRQIASRIHLSEKTV 178 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIR 230 Y+ S VKL+ +R QA A R Sbjct: 179 KNYVSSILVKLELTSRTQAAVFAAR 203 >gi|302867540|ref|YP_003836177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506060|ref|YP_004084947.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570399|gb|ADL46601.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412679|gb|ADU10796.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 215 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ R L+ERE ++ G T+ EI +L +S+ TV +++ + Sbjct: 135 RLLRHLTPPAPPRDERRPALSEREIEVVREIARGRTNLEIGAELFISLSTVKSHVSAVQT 194 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL NR + A + Sbjct: 195 KLGLRNRTEIAVWAWEHRVV 214 >gi|206578416|ref|YP_002237711.1| response regulator UvrY [Klebsiella pneumoniae 342] gi|290508771|ref|ZP_06548142.1| response regulator [Klebsiella sp. 1_1_55] gi|206567474|gb|ACI09250.1| response regulator UvrY [Klebsiella pneumoniae 342] gi|289778165|gb|EFD86162.1| response regulator [Klebsiella sp. 1_1_55] Length = 218 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A+ A Q+ +E K S A +L+ERE + + G EI+E+L LS Sbjct: 119 ASGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLS 177 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TVN+Y KL+ ++ AIR G Sbjct: 178 PKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209 >gi|217971562|ref|YP_002356313.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217496697|gb|ACK44890.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 198 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L ++E L+LA +G ++ +IAE L ++ TV YL A KL+A NRI A A + Sbjct: 136 DPLNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQK 195 Query: 232 GYI 234 G++ Sbjct: 196 GWL 198 >gi|134101945|ref|YP_001107606.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|134101947|ref|YP_001107608.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914568|emb|CAM04681.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] gi|133914570|emb|CAM04683.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 150 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + S ++ +++ E + + L R A LT RE L+L DG + Sbjct: 51 LAAASGGGVMPPDLLGELLKQVDYLQREVLT---PRGLNASGLTTREIDVLRLMADGLDT 107 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+KL S TV + T +L+ NR A+A A+R G I Sbjct: 108 AEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGVI 150 >gi|160873477|ref|YP_001552793.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|304411702|ref|ZP_07393314.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307306246|ref|ZP_07585991.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|160858999|gb|ABX47533.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|304349890|gb|EFM14296.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306911119|gb|EFN41546.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|315265706|gb|ADT92559.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 198 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L ++E L+LA +G ++ +IAE L ++ TV YL A KL+A NRI A A + Sbjct: 136 DPLNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQK 195 Query: 232 GYI 234 G++ Sbjct: 196 GWL 198 >gi|325001931|ref|ZP_08123043.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 217 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 154 YQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 V+ + +L+ +E L+L DG T+ +I +L L+ TV Y+ S Sbjct: 133 AAVLERLRRGDTATQSDPRYESLSPQEQRILELIADGLTNRQIGGELHLAEKTVKNYVSS 192 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KL R +A A+ Sbjct: 193 ILHKLGYARRTEAAVYAVER 212 >gi|319948162|ref|ZP_08022323.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319438174|gb|EFV93133.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 294 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 6/92 (6%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +V E C +++ L+ RE L G T+ E A +G+ Sbjct: 206 EDPDVRAELERICAEMV------SPPPEMPTARLSRRELDVLACVAQGKTNIETAADMGI 259 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TV +YL S KLDA R +A+ A R G Sbjct: 260 GAETVKSYLRSVMRKLDAHTRFEAVNAARRMG 291 >gi|293397213|ref|ZP_06641487.1| LuxR family two component transcriptional regulator [Serratia odorifera DSM 4582] gi|291420684|gb|EFE93939.1| LuxR family two component transcriptional regulator [Serratia odorifera DSM 4582] Length = 201 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 35/82 (42%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I+A L + ++ + LT +E L L G ++ +IA L +S T Sbjct: 113 QAIDAVLGGASGFPADLPTDETAATDSPQLTPKELQVLGLLSKGLSNLQIAAMLNISNKT 172 Query: 205 VNAYLGSATVKLDAVNRIQAIA 226 V+ + + K A N ++ +A Sbjct: 173 VSTHKKNILRKTGASNLLELVA 194 >gi|186686538|ref|YP_001869734.1| LuxR family GAF modulated transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468990|gb|ACC84791.1| GAF modulated transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 226 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 62/221 (28%), Gaps = 30/221 (13%) Query: 15 QELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 QEL L I +N+ +Y ++ ++ + + Sbjct: 21 QELRLALTDKIGEHFGVQNWGIYLLDDRPTTQ------IDVQGIPAVCLESNPVGRY--- 71 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + ++ + S V + P+ G + Sbjct: 72 --VVERHAPAHEQLLLSPGDWKHFCSRSDHEHV-----------MTGPIVCDGRLVGTLN 118 Query: 134 FTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAG 186 + + + C + L + + LT RE +L Sbjct: 119 LARDKGNPAFNGNDLADLSALCIHLSAKMATLRTTKPQISNSLLVNPLTARELEIAELVA 178 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G T+ EI EKL ++ ++V L KL R + +AK Sbjct: 179 QGLTNSEIGEKLWITQNSVKQALKRMFRKLKVSARAEMVAK 219 >gi|163751601|ref|ZP_02158822.1| response regulator [Shewanella benthica KT99] gi|161328513|gb|EDP99667.1| response regulator [Shewanella benthica KT99] Length = 214 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFL--ELFKKRSSAARNLTERETS 180 +GY+ + + + AH ++ + S ++L+ERE Sbjct: 96 AGASGYLTKGATPPEVLQAIRQVAHGQRYLSPEIAQQMALSQFSSSDESPFQSLSERELQ 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + +G EIA +L LS TVN+Y KL ++ AIR+ I Sbjct: 156 IMMMITNGEKVSEIAAQLNLSPKTVNSYRYRLFAKLGINGDVELTRLAIRYKMI 209 >gi|153852992|ref|ZP_01994429.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814] gi|149754634|gb|EDM64565.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814] Length = 223 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NLT+ E + G G +++EIAE L LS TV YL KL+ +R Q A+ Sbjct: 153 RTENLTKTEWKIINEVGRGSSNKEIAENLNLSEGTVRNYLSGILNKLEFRDRTQLAIWAV 212 Query: 230 RF 231 + Sbjct: 213 QN 214 >gi|119476963|ref|ZP_01617244.1| Two Component Transcriptional Regulator, LuxR family protein [marine gamma proteobacterium HTCC2143] gi|119449770|gb|EAW31007.1| Two Component Transcriptional Regulator, LuxR family protein [marine gamma proteobacterium HTCC2143] Length = 222 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+R+ L+L G++++ IA LS +TV ++ + L NR Q A + G Sbjct: 155 LTDRQLDILRLVAKGHSNKGIARHSNLSENTVKVHVSAILKALGLSNRTQIGLLAQKIGI 214 Query: 234 I 234 + Sbjct: 215 L 215 >gi|107025539|ref|YP_623050.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693279|ref|YP_838812.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737450|ref|YP_001778710.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105894913|gb|ABF78077.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116651279|gb|ABK11919.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169819638|gb|ACA94220.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 214 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 10/127 (7%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSS 169 G+ + + L + +++A + + Sbjct: 83 GLPIIFITAHGDVAMSVKAMKNGALDFLSKPFRDQEMLDAVEGALLKHEARRRTDGRVAE 142 Query: 170 AA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT RE + G +++IA ++ LS TV + G+A K++ + + + Sbjct: 143 VRRRYESLTPREREVMGFVVRGLLNKQIAAEMDLSEITVKIHRGNAMRKMEVRSLAELVL 202 Query: 227 KAIRFGY 233 A G Sbjct: 203 GAKLLGI 209 >gi|318058563|ref|ZP_07977286.1| LuxR family two-component response regulator [Streptomyces sp. SA3_actG] Length = 235 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +V+ E +++ + + L+ RE L L G G T+ +IAE+L L+ Sbjct: 138 RMTSRVMARIREPEREKPAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEK 197 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TV + S KL RIQA A R Sbjct: 198 TVKNRVSSILGKLGVGRRIQAAMIAERL 225 >gi|307545400|ref|YP_003897879.1| response regulator GacA [Halomonas elongata DSM 2581] gi|307217424|emb|CBV42694.1| response regulator GacA [Halomonas elongata DSM 2581] Length = 251 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L++RE + + +IA+++ LS TVN Y KLD + ++ A+ Sbjct: 180 PFDQLSQRELQVAMMIVNCQKVADIADRMFLSPKTVNTYRYRIFEKLDVHSDVELTHLAL 239 Query: 230 RFGYI 234 R+G + Sbjct: 240 RYGLV 244 >gi|50841898|ref|YP_055125.1| two-component system response regulator [Propionibacterium acnes KPA171202] gi|50839500|gb|AAT82167.1| two-component system response regulator [Propionibacterium acnes KPA171202] Length = 206 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 125 GFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G F + ++ A + I L + L+ RE L+ Sbjct: 97 RAMDAGVAGFLVKDTPAEVLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|94984291|ref|YP_603655.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554572|gb|ABF44486.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 200 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 5/133 (3%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 +R + + R G+ + + +L+ + GA QV + Sbjct: 69 LRTRCPEVRVVIVTTFARAGYLRRALEVGARGYLLKDAPA-SDLAGAIRQVHAGGRAIDP 127 Query: 166 KRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ A LTERE L+ A G ++ IA +L LS TV YL A KL NR Sbjct: 128 GLAAEAWGERDPLTERERQVLRAAEGGASTAVIAARLNLSEGTVRNYLSEAISKLGCENR 187 Query: 222 IQAIAKAIRFGYI 234 I+A KA G++ Sbjct: 188 IEAARKAREQGWL 200 >gi|254718410|ref|ZP_05180221.1| Monoamine regulon transcriptional regulator [Brucella sp. 83/13] gi|306840178|ref|ZP_07472961.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653] gi|306404743|gb|EFM61039.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653] Length = 245 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 177 GELLTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229 >gi|254476578|ref|ZP_05089964.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11] gi|214030821|gb|EEB71656.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11] Length = 244 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 4/116 (3%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL--- 174 I+ + G + A + + D L + + AA L Sbjct: 119 ISTAIHAGAAGFVPKHSQRDVYNNAFDAMRRGIAFVPPGY-DLLPHDSEANDAADRLATL 177 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T ++ LQL G +++IA L ++ TV A++ + KL +R QA+ A Sbjct: 178 TNQQARILQLICAGKLNKQIAFDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIAKE 233 >gi|149927326|ref|ZP_01915582.1| putative DNA-binding response regulator [Limnobacter sp. MED105] gi|149824040|gb|EDM83263.1| putative DNA-binding response regulator [Limnobacter sp. MED105] Length = 211 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 41/83 (49%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ F ++S++ L+ RE L G +IA++L +S HTV ++ + Sbjct: 129 IARKLMQYFQPNQGEQSASTAVLSVREIEVLGFLAKGIRLVDIAKQLEISHHTVGDHVKN 188 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R +A KA FG + Sbjct: 189 IYRKLNINSRAEAAIKAQGFGLL 211 >gi|170736603|ref|YP_001777863.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818791|gb|ACA93373.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 231 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L A L+ RE ++L G + +IAE+L S T++ SA KL Sbjct: 137 MDRILRAAGNSGGKAPALSARELEVIRLFASGLSVNDIAEQLSRSKKTISTQKSSAMQKL 196 Query: 217 DAVNRIQAIAKAIRFGYI 234 + + AI G + Sbjct: 197 GIERDVDLVRYAIACGLV 214 >gi|295839793|ref|ZP_06826726.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295827655|gb|EDY44664.2| two-component system response regulator [Streptomyces sp. SPB74] Length = 206 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + +++ S+ + LTERE L+L G ++ EIA L +S TV ++G Sbjct: 135 RLLDKYAGHLPSGEEQQPSSLQTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194 Query: 211 SATVKLDAVNRI 222 KL +R+ Sbjct: 195 HVLTKLGLRDRV 206 >gi|329935679|ref|ZP_08285485.1| putative two-component system response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329304857|gb|EGG48729.1| putative two-component system response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 227 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 3/113 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETS 180 V G I + +LA + + R A LT RE S Sbjct: 107 VHAAELLRGIRIVAAGESVLAPSATRRLLR--HYAGRPSSGIETGRVPAELNRLTARERS 164 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G + EIA LG++V TV +++ + KL +R+QA A G Sbjct: 165 VLGLLASGLDNTEIAADLGITVGTVKSHVNAVLRKLALRDRVQATILAYDLGL 217 >gi|311279137|ref|YP_003941368.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748332|gb|ADO48084.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 218 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 A Q+ +E K S A +L+ERE + + G EI+E+L LS Sbjct: 120 AGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLSP 178 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TVN+Y KL+ ++ AIR G Sbjct: 179 KTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209 >gi|307330665|ref|ZP_07609804.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883726|gb|EFN14773.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + ++ LT RE + L G +EEIA ++ +S TV + A K+ A +R Sbjct: 147 IDRELLRRFDALTPRERDVVVLVASGLGNEEIAAQMSVSPFTVKTHAVRAMTKVGARDRA 206 Query: 223 QAIAKAIRFGY 233 Q ++ R G Sbjct: 207 QLVSFTFRAGL 217 >gi|149278022|ref|ZP_01884161.1| transcriptional regulator, LuxR family protein [Pedobacter sp. BAL39] gi|149231220|gb|EDM36600.1| transcriptional regulator, LuxR family protein [Pedobacter sp. BAL39] Length = 210 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G +IA++L + V TV + + KL+ + +AI A Sbjct: 149 PLTKRETQILELITTGKDRGQIAKELFIEVETVKTHTKNIYAKLNVNTKAEAIQVAKDKR 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|302545152|ref|ZP_07297494.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462770|gb|EFL25863.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 201 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + I A +VI L L + LT RE L++A +G + IA Sbjct: 105 DSSPATLCDAIRAVARGERVIDPQLALAALDDGP-QPLTPRELEVLRMASEGEEAARIAA 163 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LSV TV YL SA KLDA NR+ AI A G++ Sbjct: 164 RLFLSVGTVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201 >gi|299768423|ref|YP_003730449.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter sp. DR1] gi|298698511|gb|ADI89076.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter sp. DR1] Length = 216 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 145 VIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 I + D + + ++LT ++ L + +G +++IA +L +S Sbjct: 122 EIWLPPNLPPNLNLDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEA 181 Query: 204 TVNAYLGSATVKLDAVNRIQAI 225 T+ A++ + KL NR QA+ Sbjct: 182 TIKAHVTAIFRKLGVQNRTQAV 203 >gi|170019748|ref|YP_001724702.1| response regulator [Escherichia coli ATCC 8739] gi|169754676|gb|ACA77375.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] Length = 218 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|119896860|ref|YP_932073.1| DNA-binding response regulator [Azoarcus sp. BH72] gi|119669273|emb|CAL93186.1| DNA-binding response regulator [Azoarcus sp. BH72] Length = 211 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 +RLG + L+ A I + + L +A L+ERE Sbjct: 94 IRLGADGYLCKNCERDELVQAIRTIAQGRRYLSARTAELLAGEIAGDGSGAAHEQLSERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + IA+ L LS+ TV+ Y KLD + + AIR G I Sbjct: 154 LQVFLRLAHGESVSAIADALHLSIKTVSTYRSRVLEKLDVTSNAELATYAIRHGLI 209 >gi|115359691|ref|YP_776829.1| two component LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284979|gb|ABI90495.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 214 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211 >gi|329945858|ref|ZP_08293545.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528306|gb|EGF55284.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 223 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 E RS+A LT+RE ++ +G + E+A +L +S TV ++ + KL Sbjct: 146 DRGREHQDPRSTAFAALTDREYEVVEAVAEGLDNGEVAARLFMSEGTVRNHISAILAKLG 205 Query: 218 AVNRIQAIAKAIRF 231 NR Q R Sbjct: 206 LRNRTQVAVMYYRA 219 >gi|318077906|ref|ZP_07985238.1| LuxR family two-component response regulator [Streptomyces sp. SA3_actF] Length = 238 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +V+ E +++ + + L+ RE L L G G T+ +IAE+L L+ Sbjct: 141 RMTSRVMARIREPEREKPAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEK 200 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TV + S KL RIQA A R Sbjct: 201 TVKNRVSSILGKLGVGRRIQAAMIAERL 228 >gi|314980198|gb|EFT24292.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|315088072|gb|EFT60048.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] Length = 218 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217 Query: 234 I 234 + Sbjct: 218 L 218 >gi|296117403|ref|ZP_06835992.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295976056|gb|EFG82845.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 256 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 62/219 (28%), Gaps = 14/219 (6%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF- 76 L + ++A + L+ ++SA + E D Sbjct: 39 QATLAFGCDLLQASSAILFWVDSAHFVQTIELAGTEADLLPE-----YFNNGFYTYDPLN 93 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + +G ++ + Q+ I F R + Sbjct: 94 IRKVLNGSNNVLMLEQERNHNSHDHNQIHDTFLQRHGIVDEINFLFRNENDAVALLSVMK 153 Query: 137 EFLMLAN---EVIIE-AHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDG 188 + L + E + ++ +R LT +E + L G Sbjct: 154 RQIDLTPFPTDFQWEPLRRYMEFTLQQHPQMRARRICRILKEKFYLTNKEVEVVFLLEKG 213 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ EI+E + + + TV ++ + K +R A A Sbjct: 214 ASNWEISEIMHIGISTVKTHIVNILNKTGVGSRAAAAAY 252 >gi|149916047|ref|ZP_01904570.1| response regulator receiver [Roseobacter sp. AzwK-3b] gi|149810121|gb|EDM69969.1| response regulator receiver [Roseobacter sp. AzwK-3b] Length = 123 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR-NLT 175 L +G + + SE L +G + + KR A R LT Sbjct: 6 LDAGASGILTYNSEMSDLRVAARRVMNGDNYVQPDMAMDIFAKLRQAEAKRKEAERLRLT 65 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE+ ++ G T+ +I+ +L +S TV Y+GS K A NR++ + +A R G Sbjct: 66 ARESQVVRHLMQGMTNGQISVELNISEKTVKHYVGSLKDKFGAANRLEVVLEAQRLG 122 >gi|327404698|ref|YP_004345536.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320206|gb|AEA44698.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 217 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ L+ RE ++L Y++E+IAE+L +S TV + + K + + Sbjct: 145 EFRKDLEVAQLSNREIEIIRLIALEYSNEKIAEELFISKRTVETHRKNINQKTNIKTVVG 204 Query: 224 AIAKAIRFGYI 234 I AIR + Sbjct: 205 LIKFAIRNELV 215 >gi|319791685|ref|YP_004153325.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594148|gb|ADU35214.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 250 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G++ EIA GLSVHTV ++ + KL ++ +A+ +A R G Sbjct: 186 LSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFEATRLGL 245 Query: 234 I 234 + Sbjct: 246 L 246 >gi|226304145|ref|YP_002764103.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183260|dbj|BAH31364.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 217 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 4/88 (4%) Query: 151 GACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + +R + + +LTERE L + G + IAE+L L TV Sbjct: 129 LFSCDSLRAIVASSPRRQAPDQTPLASLTEREREVLTILATGAANSVIAERLYLGETTVK 188 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S KL NR+ A A R G + Sbjct: 189 THISSLFAKLGVPNRVSASLIAFRCGLV 216 >gi|212638396|ref|YP_002314916.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559876|gb|ACJ32931.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 245 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 7/115 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK----KRSSAARNLTERET 179 G+V T+ L + V+ + L+ E Sbjct: 125 GITGFVSKTASSEQLVTAIRCALRDEAVIPVHVLRQLCRCGAKENMDENGQLAVLSSLEQ 184 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++IAEK S T+ +L KL +RI+A+ KA + G I Sbjct: 185 ELLMEVANGLCNKDIAEKHHTSQRTIERHLSRIFTKLHVSSRIEAVEKAKQLGLI 239 >gi|170751882|ref|YP_001758142.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658404|gb|ACB27459.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 305 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 16/153 (10%) Query: 87 IIWQ-----SIQEETVIESSGQLSVRLEGGL---LPFAGIAFPVRLGFHKNGYVIFTSEF 138 ++W + + SG ++ AG A P+ L V + F Sbjct: 158 VLWSTPQAGRLLAGLGADPSGTRALPAGARDWLRGCLAGAAQPLAL--TDRDGVAYALSF 215 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + I+ ++ D L +R A +T RE L G +S +I E L Sbjct: 216 IGRTPDEIL------LRLSRDALSAGVERLRARLPVTGREAEVLLWLSRGKSSRDIGEIL 269 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 GLS TV +L KL NR A A R Sbjct: 270 GLSHRTVTKHLEGIYAKLGVENRTAASIIAARH 302 >gi|148553727|ref|YP_001261309.1| two component LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498917|gb|ABQ67171.1| two component transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 229 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L G T EIA++L LS HTV ++ + KL R +A+ +AI+ Sbjct: 164 APRLTPRELDILWGIAKGLTYNEIADQLDLSRHTVPGHIKAIYRKLQVQTRGEAVYEAIQ 223 Query: 231 FGYI 234 G I Sbjct: 224 CGLI 227 >gi|107027523|ref|YP_625034.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693765|ref|YP_839298.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736933|ref|YP_001778193.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105896897|gb|ABF80061.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116651765|gb|ABK12405.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169819121|gb|ACA93703.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 214 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211 >gi|330809071|ref|YP_004353533.1| two-component system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377179|gb|AEA68529.1| putative two-component system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 209 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 14/157 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLANEV 145 + S L R+ + + + G + ++ + Sbjct: 53 LDMTMPGSSGEDLIGRIHAHYPKLPMLILSMHNEAHIAQRALRAGASGYMTKDRDPEALL 112 Query: 146 IIE------AHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEK 197 A Q+ + AA++LT RE L++ G + +IAE+ Sbjct: 113 AAIRKVSTGARYLDPQLAEQIALQSSGVTPENAAQSLTSREFQILRMLAQGLSVNQIAEQ 172 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S TV+ + K+ + A+ G + Sbjct: 173 LVISNKTVSTHKTRLMEKMCFATSTDLVRYALNEGLV 209 >gi|300787038|ref|YP_003767329.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796552|gb|ADJ46927.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + S LT RE L L +G T++EI +LG+S +T ++ KL A ++ Sbjct: 142 RLTGRGSGGGAALTARERETLDLLAEGATTDEIGARLGVSRNTTRNHVQRVLEKLGARSK 201 Query: 222 IQAIAKAIRFGYI 234 ++A+A A R G I Sbjct: 202 LEAVAVARREGLI 214 >gi|255326927|ref|ZP_05368003.1| two component transcriptional regulator, LuxR family [Rothia mucilaginosa ATCC 25296] gi|255296144|gb|EET75485.1| two component transcriptional regulator, LuxR family [Rothia mucilaginosa ATCC 25296] Length = 210 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 6/117 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTER 177 R G+ + S F++ A +V + ++ A LTER Sbjct: 95 RPGYVRRALEAGASGFVVKDTGARQLAEAI-RRVHAGLRVVDPSLAADSLVTGASPLTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ A G T+++IA L LS TV YL +A K A R A+ A G++ Sbjct: 154 EAQVLREAASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIATENGWL 210 >gi|160878241|ref|YP_001557209.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426907|gb|ABX40470.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 212 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T RE + +G +++EIA+KL +S TV ++ + K +R Q Sbjct: 151 TTRELDIIASVAEGLSNKEIAKKLFISEGTVKNHISTILEKGGFSHRTQLAVY 203 >gi|28868117|ref|NP_790736.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213970211|ref|ZP_03398342.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301385917|ref|ZP_07234335.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302059557|ref|ZP_07251098.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302130881|ref|ZP_07256871.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851354|gb|AAO54431.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213925092|gb|EEB58656.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|331018801|gb|EGH98857.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 207 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +A LT R+ L L G T++EIA++LG+S TV ++ S L R Sbjct: 136 FNESAVNALSPLTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRS 195 Query: 223 QAIA----KAIR 230 A A AIR Sbjct: 196 AAAAQFSSLAIR 207 >gi|99080669|ref|YP_612823.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99036949|gb|ABF63561.1| two component transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 204 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ R+ L+ + T++EIA +L L T+ ++ + KL+ NR QA A Sbjct: 139 PLLDGLSPRQIQVLEGVCNAKTNKEIARELELEEVTIKFHVRTLCRKLEVQNRTQAALAA 198 Query: 229 IRFGY 233 G Sbjct: 199 KSAGL 203 >gi|307324066|ref|ZP_07603275.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890515|gb|EFN21492.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 430 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 64/220 (29%), Gaps = 10/220 (4%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 S + RL + R A+ ++ + + + ++ Sbjct: 217 SAGDAFARLAESLRPV-LRGLAV-RLDLGPPGTEEGADRLLPADVANTARAVVRAVVHAM 274 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D+ + P+ + + G+L + + Sbjct: 275 LDEQGPGQDGAPHPVRRVHVGWKVGDGELRATVRDDGPGVLRRTAL-------DARRVGE 327 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 ++ L + + E R L RE L+ G + Sbjct: 328 RLSALGGRLDVDAVPEWGTLVT-ATVPLGPPQPARKDPLYVLGARELEVLERLARGRRNR 386 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +IA++L +S TV ++ + KL +R +A A A +G Sbjct: 387 QIAQELHISESTVKFHVANILEKLGVTSRGEAAALAHTWG 426 >gi|300863692|ref|ZP_07108626.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] gi|300338324|emb|CBN53772.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] Length = 224 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + +LT+RE LQL DG ++ +I ++L LS TV Y+ S K D NR + Sbjct: 153 DSDITEKSLSLTQREKDVLQLLTDGLSNAQIGDRLHLSHRTVEKYVSSLLRKSDRTNRAE 212 Query: 224 AIAKAIRFGYI 234 + A+ + Sbjct: 213 LVRFAMEHHLV 223 >gi|229589736|ref|YP_002871855.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361602|emb|CAY48480.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 205 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT R+ L G T++EIA +L +S +TV ++ S L+ NR A+A A Sbjct: 142 AMSKLTSRQREVWHLIAQGKTNKEIAAELQISPYTVRVHVSSLIRVLNVPNR--AVAAAR 199 Query: 230 RFG 232 G Sbjct: 200 FAG 202 >gi|219664363|gb|ACL31213.1| two-component system putative response regulator [Rhodococcus sp. TFB] Length = 206 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 33/77 (42%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D E + +L+ RE L+L G T+ EIAE L +S TV ++ S KL Sbjct: 129 ADTTESENPLEANIDSLSSRELEVLKLIASGLTNTEIAEGLTVSSRTVESHRASIQRKLL 188 Query: 218 AVNRIQAIAKAIRFGYI 234 R + A G + Sbjct: 189 LRTRAELARVARDAGLL 205 >gi|149927782|ref|ZP_01916034.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149823608|gb|EDM82838.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 222 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LE+ K+ S L+ RE + L G ++ IA +L +S+ TV + + KL + Sbjct: 139 LEVLKQWSERIDRLSPREREVMFLVAKGKLNKVIASELDISMRTVEVHRANVFDKLKVRS 198 Query: 221 RIQAIAKAIRF 231 + R Sbjct: 199 AAELATLLSRL 209 >gi|126653126|ref|ZP_01725255.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905] gi|126590131|gb|EAZ84256.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905] Length = 243 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +T RE L G + EIA++L +S +T+ +L + K NR Q +AK + Sbjct: 181 EMTAREREVLNFVSKGLKNVEIAQQLIVSENTIKKHLQNLYRKFQVTNRTQLLAKCL 237 >gi|157371824|ref|YP_001479813.1| two component LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157323588|gb|ABV42685.1| two component transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 210 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NLT R+ L + G+ ++ IA +L +S TV ++ + K+ +R++AI Sbjct: 147 NLTPRQVEVLAMMLRGFPNKRIASQLSISEPTVKEHISNILKKIGVNSRVEAI 199 >gi|62199613|gb|AAX76904.1| EsrB [Edwardsiella tarda] Length = 214 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + LT RE L+L +G + +IAE L +S+ TV + + KLDA N Sbjct: 141 VASSDMAQEPPLTLRERQILKLVAEGKRNRDIAELLSISLKTVETHRLNLMRKLDAHNAA 200 Query: 223 QAIAKAIRFGYI 234 + A R G + Sbjct: 201 ELSNWARRLGVL 212 >gi|329957147|ref|ZP_08297714.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] gi|328523415|gb|EGF50514.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] Length = 204 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 145 VIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 I + I L ++ + S L++RE + G T++ IA+KL LS+ Sbjct: 104 AICDDIEVITAKINRLLHTEEEDEKDSEQETLSQREKEIITCVVKGMTNKAIADKLYLSI 163 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 HTV + + KL + AI + Sbjct: 164 HTVITHRRNIARKLQIHSPAGLTIYAIVNKLV 195 >gi|207723660|ref|YP_002254058.1| two-component response regulator [Ralstonia solanacearum MolK2] gi|206588864|emb|CAQ35826.1| two-component response regulator protein [Ralstonia solanacearum MolK2] Length = 217 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA L+ RE S LQL +G T+ ++ L LS T+ Y KL N + A Sbjct: 129 SAWETLSARERSVLQLVAEGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVCNVTGLVLAA 188 Query: 229 IRFGYI 234 I G I Sbjct: 189 IDLGLI 194 >gi|330975353|gb|EGH75419.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 87 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 14 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 73 Query: 224 AIAKAIRF 231 A + Sbjct: 74 AALLLQQL 81 >gi|313835533|gb|EFS73247.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928592|gb|EFS92423.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970359|gb|EFT14457.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|314982460|gb|EFT26553.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315090549|gb|EFT62525.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094064|gb|EFT66040.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|328908207|gb|EGG27966.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 206 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G F + ++ A +VI L + L+ERE L+ Sbjct: 97 RAMDAGVAGFLVKDTPAEDLARVVREVHAGGRVIDPALA-AESLIEGHNPLSEREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A + G++ Sbjct: 156 LAESGASISLIASQLYLSVGTVRNHVSSAIGKTGAANRTEAAVTARQRGWL 206 >gi|298250270|ref|ZP_06974074.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548274|gb|EFH82141.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 596 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + T+RE + L G ++ EIA KL +S TV ++ + KL+ +R QA+AK Sbjct: 518 ARRELFTQRENEVINLLLQGASNREIAAKLIISEGTVKKHVANICGKLEVKSRTQALAK 576 >gi|294141463|ref|YP_003557441.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293327932|dbj|BAJ02663.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 210 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 32/64 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + NLT RE LQ G T+ +IA +L +S T+ +L A K+ +R Q Sbjct: 137 DQSHMEGSDNLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYRAFRKIGVSSRGQ 196 Query: 224 AIAK 227 AIA Sbjct: 197 AIAW 200 >gi|239816173|ref|YP_002945083.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802750|gb|ACS19817.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 262 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT RE L+ G S+EI+ +LG+S TVNA++ + KL +R Sbjct: 190 RPPTETPLREATLTAREREVLRFVARGCVSKEISVRLGISGQTVNAHIKNIYKKLHVHSR 249 Query: 222 IQAIAKAIRFG 232 QA++ A G Sbjct: 250 AQAVSLATHTG 260 >gi|251794754|ref|YP_003009485.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542380|gb|ACS99398.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 200 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + + + A + I+ L L A LTERE L+LA +G + EIA Sbjct: 104 DSPIDELSAALRNVYAGKRAISPELALSFWE--AENPLTEREREVLRLAREGLPAGEIAS 161 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV YL A KLDA NRI AI A + G++ Sbjct: 162 RLFLSAGTVRNYLSEAIQKLDAKNRIDAIGIAEKNGWL 199 >gi|152964247|ref|YP_001360031.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151358764|gb|ABS01767.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 228 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE--------AHGACYQVITDFLELFKKRSSAARN 173 +R G + + L A + E G Sbjct: 108 IRRGARGYVTKAISGDDLAAAVRRVAEGDAVFSPRLAGFVLDAFGAGAGEVAAADDELDR 167 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L GY +E+A++L +SV TV ++ + KL NR + A Sbjct: 168 LSAREREVMRLIARGYAYKEVAKELFISVKTVETHVSAVLRKLQLSNRNELTRWAAARRL 227 Query: 234 I 234 + Sbjct: 228 L 228 >gi|172064507|ref|YP_001812158.1| two component LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997024|gb|ACB67942.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 214 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211 >gi|152983933|ref|YP_001349196.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150959091|gb|ABR81116.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 268 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 21/178 (11%) Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D F GL +++ + + + + + F +++ Sbjct: 76 NGLYLLDPFYQACREGLPSGLYRLEEIAPDHFRQSEYYLSYFHDNVLEDEVQFILQVPGQ 135 Query: 128 KNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKRSSAARN------------ 173 + + + E ++ ++ + +R A Sbjct: 136 GALSLSLGMQRMFADEECGMLGLLASWVLALMQQHWQQRSQRLLPAAPQEEMATQIRDAL 195 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ERE +L GY+S+ +AE+L +S T+ + KLD ++ + Sbjct: 196 SHFGASVLSERELEIARLILRGYSSKAMAERLAISPETIKVHRRHLYAKLDISSQPEL 253 >gi|227818586|ref|YP_002822557.1| CitB, response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain CitB [Sinorhizobium fredii NGR234] gi|36958841|gb|AAQ87266.1| two-component response regulator [Sinorhizobium fredii NGR234] gi|227337585|gb|ACP21804.1| putative CitB, response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain CitB [Sinorhizobium fredii NGR234] Length = 217 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L+L G +++++A L L T+ ++ KLD NR +A Sbjct: 152 ELTTREREVLKLVASGMSNKQVARNLNLHEKTIKHHMTQIMAKLDVANRTEAA 204 >gi|82775855|ref|YP_402202.1| putative response regulator [Shigella dysenteriae Sd197] gi|309785989|ref|ZP_07680618.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617] gi|81240003|gb|ABB60713.1| putative response regulator [Shigella dysenteriae Sd197] gi|308926100|gb|EFP71578.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617] Length = 209 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147 I E+ L RL F I + + L E ++ Sbjct: 53 IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112 Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +A H C I L + + A LT RE L G + +EIA KL Sbjct: 113 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS TV+ + + KL+ + I+ + + + Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFVLDHHLL 206 >gi|314930861|gb|EFS94692.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] Length = 218 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217 Query: 234 I 234 + Sbjct: 218 L 218 >gi|308049915|ref|YP_003913481.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307632105|gb|ADN76407.1| two component transcriptional regulator, LuxR family [Ferrimonas balearica DSM 9799] Length = 216 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%) Query: 142 ANEVIIEAHGAC----YQVITDFLELFK------KRSSAARNLTERETSCLQLAGDGYTS 191 + + EA + ++ EL + + LT ++ LQ+ +G + Sbjct: 110 DPDQLAEALQIVLDGDTYLPSNMAELAEPSFEANDIGAKLAELTPQQYRVLQMFAEGMLN 169 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++IA LG+S T+ A+ + KL NR QA+ Sbjct: 170 KQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 204 >gi|288574077|ref|ZP_06392434.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569818|gb|EFC91375.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 832 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 15/141 (10%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP------VRLGFHKNGYVIFTSEFLM 140 + + + E+ + ++ + G+ P V S Sbjct: 691 VAYSRLGRESDGAEALGRALDMAMP----DGLILPFAENADVLGSSLDVVMEERWSSERN 746 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + +V+ A LT RE L +G ++ EIA++L L Sbjct: 747 RFSSFVKRYSLGKERVLQSLSGRE-----AVEGLTFRENDVALLVSEGLSNREIAKRLFL 801 Query: 201 SVHTVNAYLGSATVKLDAVNR 221 S +TV YL S KL +R Sbjct: 802 SENTVKFYLKSIFQKLGISSR 822 >gi|226363605|ref|YP_002781387.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242094|dbj|BAH52442.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 897 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 157 ITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + L RS +A+ LT RE L T+E+IA L +SV+TV +L Sbjct: 818 FAETLRASFPRSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYR 877 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R AIA A G + Sbjct: 878 KLGVTSRRDAIAAAQHNGLL 897 >gi|146306323|ref|YP_001186788.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145574524|gb|ABP84056.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 215 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT ++ L + +G +++IA +L +S TV A++ + KL R QA Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELSVSEATVKAHVTAIFRKLGVRTRTQAALL 206 >gi|238918900|ref|YP_002932414.1| hypothetical protein NT01EI_0965 [Edwardsiella ictaluri 93-146] gi|84663108|gb|ABC60090.1| EsrB [Edwardsiella ictaluri 93-146] gi|238868467|gb|ACR68178.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 214 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 11/143 (7%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACY--Q 155 + +L + + + ++ A Sbjct: 70 DVIRQLRRRWNDMRIVVVTASSEARRGSDALAAGALAYVLKQSPQQTLLAAMQHASLGKT 129 Query: 156 VITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L L + + LT RE L+L +G + +IAE L +S+ TV + + Sbjct: 130 FVDPALRLDSLEASSDIAQEPPLTLRERQILKLVAEGNRNRDIAELLSISLKTVETHRLN 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KLDA N + A R G + Sbjct: 190 LMRKLDAHNAAELSNWARRLGVL 212 >gi|82701372|ref|YP_410938.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409437|gb|ABB73546.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 267 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 12/115 (10%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAA----------R 172 G H YV+F+S+ + + +I + L + + Sbjct: 145 GHHDCLYVVFSSKDKLDDSTLIAMEILLPYLDTALRRVTPLPQHSCRPSLLADAPEYDLH 204 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + G T+ EI L +S +TV +L KLD NR+QAI+K Sbjct: 205 GLSEREVEIMTWVRKGKTNAEIGSILRISSYTVKNHLHQIFRKLDVYNRVQAISK 259 >gi|126172600|ref|YP_001048749.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|152998897|ref|YP_001364578.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|125995805|gb|ABN59880.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] gi|151363515|gb|ABS06515.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] Length = 198 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L ++E L+LA +G ++ +IAE L ++ TV YL A KL+A NRI A A + Sbjct: 136 DPLNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQK 195 Query: 232 GYI 234 G++ Sbjct: 196 GWL 198 >gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 307 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 21/219 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI------PNILIETYGDD 75 + ++A T +D R ++ L N L+ GD Sbjct: 95 EHVVRALEAGGVDYLTKPINID-ELRARIRVHLSNARSAQSARVALDAAGRHLLAVRGDG 153 Query: 76 FLFH----FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 + + V + E G F ++ Sbjct: 154 TVRWSTPQATRLVNAATGSDDGLAFVAGRIAEWMRERENSPGERQG-TFTLQRASQTGLQ 212 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + + + ANE + + L + LT+RE+ L G ++ Sbjct: 213 ISYLGA--IGANEYLFRLTAENGMSDDETLRQHFR-------LTQRESEVLLWIAKGKSN 263 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +I E LGLS TV +L VKL NR A KA + Sbjct: 264 RDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQ 302 >gi|226326299|ref|ZP_03801817.1| hypothetical protein PROPEN_00147 [Proteus penneri ATCC 35198] gi|225205250|gb|EEG87604.1| hypothetical protein PROPEN_00147 [Proteus penneri ATCC 35198] Length = 205 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + L ++ + +L+ERE + + G +IA +L ++ TVN+Y K Sbjct: 115 AMEIALTKLQQELNPLHHLSERELQIMSMIIRGKKITQIASELNINTKTVNSYRYRMFSK 174 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L ++ AIR+G I Sbjct: 175 LKISGDVELTHIAIRYGLI 193 >gi|224583552|ref|YP_002637350.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468079|gb|ACN45909.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 206 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 117 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 175 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 176 MFSKLNIHGDVELTHLAIRHGL 197 >gi|213618592|ref|ZP_03372418.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 96 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 7 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 65 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 66 MFSKLNIHGDVELTHLAIRHGL 87 >gi|182436316|ref|YP_001824035.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464832|dbj|BAG19352.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 354 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ RE + L G ++++IA +S TV ++ KL + +R +AIA Sbjct: 287 RLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIA 340 >gi|161502931|ref|YP_001570043.1| response regulator [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864278|gb|ABX20901.1| hypothetical protein SARI_00990 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 218 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 129 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209 >gi|311067079|ref|YP_003972002.1| response regulator [Bacillus atrophaeus 1942] gi|310867596|gb|ADP31071.1| response regulator [Bacillus atrophaeus 1942] Length = 159 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 33/77 (42%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 ++ + S LT+RE L+ +G + IA KL LS TV Y KLD Sbjct: 83 EQLEKIDSSKESYPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTVRNYCSKLYSKLD 142 Query: 218 AVNRIQAIAKAIRFGYI 234 NR +AI A + Sbjct: 143 VNNREEAIKMARTENIV 159 >gi|325110990|ref|YP_004272058.1| LuxR family transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324971258|gb|ADY62036.1| two component transcriptional regulator, LuxR family [Planctomyces brasiliensis DSM 5305] Length = 228 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + V Q+ L ++ SA L++RE + G G T+ + Sbjct: 126 IDAIRRVAAGRVYLSDQMTDRMLCRQVGAGDERPKSALETLSDRELEVFEQIGHGVTTRQ 185 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 IAEKL LS TV Y + KL+ N + A++ Sbjct: 186 IAEKLHLSPKTVETYRENIKHKLNLANATELTQHAVQ 222 >gi|298291984|ref|YP_003693923.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296928495|gb|ADH89304.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 269 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLG 199 +++A + + A+ +LTER+ + +L G++++ IA +L Sbjct: 125 PPSALLQAQALSNSADWRRMSGPAHATYRAQCSSLTERQAAVWRLLQRGHSNKVIARELA 184 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAI 225 + TV ++ KL A NR QA Sbjct: 185 MCESTVKVHMRQIMRKLGATNRTQAA 210 >gi|265983374|ref|ZP_06096109.1| two component transcriptional regulator [Brucella sp. 83/13] gi|264661966|gb|EEZ32227.1| two component transcriptional regulator [Brucella sp. 83/13] Length = 254 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 186 GELLTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238 >gi|291302292|ref|YP_003513570.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571512|gb|ADD44477.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 210 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++I +F + S A +LT+RE L G G ++ +I + LG++ TV + Sbjct: 125 AVTRRLIAEFGRRRPRPGSQADLSSLTQREIEVLSHIGRGLSNADIGKDLGMAEATVKTH 184 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + KL+ +R+QA A G Sbjct: 185 VSRILSKLELQSRVQAAILAQENGI 209 >gi|296141810|ref|YP_003649053.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029944|gb|ADG80714.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 216 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 44/77 (57%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +V+ + + S A LT +E + L+L G+G T+++IAE++ L+ TV ++ Sbjct: 131 ARVLQRIRDADRVPSLAQAGLTGQEEAVLELLGEGLTNKQIAERMFLAEKTVRNHVTGVL 190 Query: 214 VKLDAVNRIQAIAKAIR 230 KL NR+QA +A++ Sbjct: 191 AKLGVENRVQAALRAVQ 207 >gi|262202270|ref|YP_003273478.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085617|gb|ACY21585.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 212 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ERE L G + ++A +L + TV + KL +R A+A+ IR Sbjct: 148 SPALSEREHQVLVGFAQGRSIPQLAAELFIGASTVKTHTQRLYEKLGVSDRAAAVAEGIR 207 Query: 231 FGYI 234 G I Sbjct: 208 RGLI 211 >gi|226364631|ref|YP_002782413.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243120|dbj|BAH53468.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 27/227 (11%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP-------N 66 + + + + FA+ + R+ +D Sbjct: 15 VDDHPMWRDAVARDLDGAGFAVVATADGVAAAGRRAAATRPAVVLMDMQLPDGNGAAATA 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 +++ D + ++ + + +SG L L A VR Sbjct: 75 AVLDVSPDSRVLVLSASSER---DDVLDAVKAGASGYLVKSASVEELLDA-----VRATA 126 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 A + ++ A LTERET L+ Sbjct: 127 AGQAVFTPG------------LAGLVLGEYRRMSSAPADEQGPAVPKLTERETEVLRFVA 174 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++++IA KL LS TV ++ + KL NR++ AI G Sbjct: 175 KGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|157145294|ref|YP_001452613.1| response regulator [Citrobacter koseri ATCC BAA-895] gi|157082499|gb|ABV12177.1| hypothetical protein CKO_01031 [Citrobacter koseri ATCC BAA-895] Length = 217 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 129 IAQQMALSQIEPEKTETPFA-SLSERELQIMLMITRGQKVNEISEQLNLSPKTVNSYRYR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209 >gi|187921892|ref|YP_001893481.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] gi|187720330|gb|ACD21552.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 217 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 19/149 (12%) Query: 104 LSVRLEGGLLP-------FAGIAFPV--RLGFHKN-----GYVIFTSEFLMLANEVIIEA 149 L VRL G +G+ PV G +FL + Sbjct: 60 LDVRLRGKSGMAFHQEIVNSGMLIPVVFMTGHGDIEMGVKAMKAGALDFLAKPFKDQDML 119 Query: 150 HGACYQVITDFLELFKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + D L + + ++ L+ RE + G +++IA + LS T Sbjct: 120 DAVAQALAQDSGRLAAEAALTGLRASYECLSPREKEVMGFVLSGLLNKQIASAMNLSEIT 179 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V + K++A + + KA G Sbjct: 180 VKVHRAQVMRKMNARSMPDLVRKAESLGI 208 >gi|315166918|gb|EFU10935.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1341] Length = 281 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263 >gi|315151567|gb|EFT95583.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0012] Length = 281 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263 >gi|315145234|gb|EFT89250.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2141] gi|315161933|gb|EFU05950.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0645] Length = 281 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263 >gi|312904250|ref|ZP_07763412.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0635] gi|310632346|gb|EFQ15629.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0635] gi|315578796|gb|EFU90987.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0630] Length = 281 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263 >gi|307269785|ref|ZP_07551115.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX4248] gi|306513895|gb|EFM82497.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX4248] gi|315025770|gb|EFT37702.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2137] gi|315036110|gb|EFT48042.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0027] gi|329576889|gb|EGG58374.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1467] Length = 281 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263 >gi|297156374|gb|ADI06086.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 35/85 (41%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A +D + +LTERE L G+G ++ +I +L LS T+ Sbjct: 131 AAARRLVAASSDGHSARDRARRLVESLTEREAEVLAGLGEGLSNAQIGARLYLSEATIKG 190 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFG 232 Y+ KL VNR QA A G Sbjct: 191 YVSRLLDKLGCVNRTQAGLIAHEAG 215 >gi|293385055|ref|ZP_06630889.1| transcriptional regulator, LuxR family [Enterococcus faecalis R712] gi|293389326|ref|ZP_06633787.1| transcriptional regulator, LuxR family [Enterococcus faecalis S613] gi|312906044|ref|ZP_07765057.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO 512] gi|312909390|ref|ZP_07768246.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO 516] gi|291077733|gb|EFE15097.1| transcriptional regulator, LuxR family [Enterococcus faecalis R712] gi|291081348|gb|EFE18311.1| transcriptional regulator, LuxR family [Enterococcus faecalis S613] gi|310628039|gb|EFQ11322.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO 512] gi|311290414|gb|EFQ68970.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO 516] Length = 281 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263 >gi|257083658|ref|ZP_05578019.1| two-component system regulator [Enterococcus faecalis Fly1] gi|256991688|gb|EEU78990.1| two-component system regulator [Enterococcus faecalis Fly1] Length = 321 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303 >gi|257080996|ref|ZP_05575357.1| two-component system regulator [Enterococcus faecalis E1Sol] gi|256989026|gb|EEU76328.1| two-component system regulator [Enterococcus faecalis E1Sol] Length = 321 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303 >gi|256959865|ref|ZP_05564036.1| two-component system response regulator [Enterococcus faecalis Merz96] gi|256950361|gb|EEU66993.1| two-component system response regulator [Enterococcus faecalis Merz96] Length = 321 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303 >gi|256957400|ref|ZP_05561571.1| two-component system regulator [Enterococcus faecalis DS5] gi|257077604|ref|ZP_05571965.1| two-component system response regulator [Enterococcus faecalis JH1] gi|257086090|ref|ZP_05580451.1| two-component system regulator [Enterococcus faecalis D6] gi|294779936|ref|ZP_06745317.1| transcriptional regulator, LuxR family [Enterococcus faecalis PC1.1] gi|256947896|gb|EEU64528.1| two-component system regulator [Enterococcus faecalis DS5] gi|256985634|gb|EEU72936.1| two-component system response regulator [Enterococcus faecalis JH1] gi|256994120|gb|EEU81422.1| two-component system regulator [Enterococcus faecalis D6] gi|294452985|gb|EFG21406.1| transcriptional regulator, LuxR family [Enterococcus faecalis PC1.1] Length = 321 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303 >gi|256617617|ref|ZP_05474463.1| two-component system regulator [Enterococcus faecalis ATCC 4200] gi|257089157|ref|ZP_05583518.1| predicted protein [Enterococcus faecalis CH188] gi|256597144|gb|EEU16320.1| two-component system regulator [Enterococcus faecalis ATCC 4200] gi|256997969|gb|EEU84489.1| predicted protein [Enterococcus faecalis CH188] Length = 321 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303 >gi|255971190|ref|ZP_05421776.1| predicted protein [Enterococcus faecalis T1] gi|255962208|gb|EET94684.1| predicted protein [Enterococcus faecalis T1] Length = 321 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303 >gi|300023398|ref|YP_003756009.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299525219|gb|ADJ23688.1| transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 241 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 10/137 (7%) Query: 102 GQLSVRLEGGLLPFAGIAFP--VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 G G + R +G+ + + L + I +++ Sbjct: 104 GVPVSPEAGSGALLMHVDVSSWARHDTADDGWQMPVTLNPALLQDTI------SKALVSQ 157 Query: 160 FLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 F E + + +L+ R+ L L G ++ EI+E+L S++TV ++ + KL Sbjct: 158 FAEPQRSYEAHPDIDSLSPRQREVLLLVAVGKSNLEISEELSCSLNTVKRHVTAVLQKLH 217 Query: 218 AVNRIQAIAKAIRFGYI 234 NR +A A + + Sbjct: 218 LPNRTRAANLANQLNLL 234 >gi|300862032|ref|ZP_07108112.1| transcriptional regulator, LuxR family [Enterococcus faecalis TUSoD Ef11] gi|300848557|gb|EFK76314.1| transcriptional regulator, LuxR family [Enterococcus faecalis TUSoD Ef11] Length = 321 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303 >gi|227554847|ref|ZP_03984894.1| LuxR family transcriptional regulator [Enterococcus faecalis HH22] gi|229546568|ref|ZP_04435293.1| LuxR family transcriptional regulator [Enterococcus faecalis TX1322] gi|229548677|ref|ZP_04437402.1| LuxR family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255973814|ref|ZP_05424400.1| two-component system regulator [Enterococcus faecalis T2] gi|256761500|ref|ZP_05502080.1| two-component system regulator [Enterococcus faecalis T3] gi|256854402|ref|ZP_05559766.1| transcriptional regulator [Enterococcus faecalis T8] gi|256964432|ref|ZP_05568603.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|257415300|ref|ZP_05592294.1| two-component system regulator [Enterococcus faecalis AR01/DG] gi|257418341|ref|ZP_05595335.1| predicted protein [Enterococcus faecalis T11] gi|257420990|ref|ZP_05597980.1| LuxR family transcriptional regulator [Enterococcus faecalis X98] gi|227176016|gb|EEI56988.1| LuxR family transcriptional regulator [Enterococcus faecalis HH22] gi|229306193|gb|EEN72189.1| LuxR family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|229308313|gb|EEN74300.1| LuxR family transcriptional regulator [Enterococcus faecalis TX1322] gi|255966686|gb|EET97308.1| two-component system regulator [Enterococcus faecalis T2] gi|256682751|gb|EEU22446.1| two-component system regulator [Enterococcus faecalis T3] gi|256709962|gb|EEU25006.1| transcriptional regulator [Enterococcus faecalis T8] gi|256954928|gb|EEU71560.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|257157128|gb|EEU87088.1| two-component system regulator [Enterococcus faecalis ARO1/DG] gi|257160169|gb|EEU90129.1| predicted protein [Enterococcus faecalis T11] gi|257162814|gb|EEU92774.1| LuxR family transcriptional regulator [Enterococcus faecalis X98] gi|323479927|gb|ADX79366.1| Transcriptional regulator, LuxR family [Enterococcus faecalis 62] gi|327534321|gb|AEA93155.1| LuxR family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 321 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303 >gi|227517697|ref|ZP_03947746.1| LuxR family transcriptional regulator [Enterococcus faecalis TX0104] gi|227074852|gb|EEI12815.1| LuxR family transcriptional regulator [Enterococcus faecalis TX0104] Length = 321 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303 >gi|29375326|ref|NP_814480.1| LuxR family transcriptional regulator [Enterococcus faecalis V583] gi|307272545|ref|ZP_07553798.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0855] gi|307274680|ref|ZP_07555852.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] gi|307284507|ref|ZP_07564669.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0860] gi|307289576|ref|ZP_07569520.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0109] gi|307296378|ref|ZP_07576203.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0411] gi|312900327|ref|ZP_07759638.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|312953116|ref|ZP_07771965.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0102] gi|29342786|gb|AAO80550.1| transcriptional regulator, luxR family [Enterococcus faecalis V583] gi|306496062|gb|EFM65646.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0411] gi|306499390|gb|EFM68763.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0109] gi|306503184|gb|EFM72438.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0860] gi|306508609|gb|EFM77707.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] gi|306510830|gb|EFM79847.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0855] gi|310628950|gb|EFQ12233.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0102] gi|311292515|gb|EFQ71071.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|315029094|gb|EFT41026.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX4000] gi|315031442|gb|EFT43374.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0017] gi|315146952|gb|EFT90968.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX4244] gi|315153973|gb|EFT97989.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0031] gi|315156767|gb|EFU00784.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0043] gi|315157723|gb|EFU01740.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0312] gi|315164575|gb|EFU08592.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1302] gi|315170702|gb|EFU14719.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1342] gi|315172183|gb|EFU16200.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1346] gi|315575359|gb|EFU87550.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0309B] gi|315581389|gb|EFU93580.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0309A] Length = 281 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+RE L L + T+++IA +L LS+ TV ++ + VKL+ R + Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263 >gi|27375369|ref|NP_766898.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27348505|dbj|BAC45523.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 223 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 5/116 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNLTE 176 P+ + K G V F S+ ++ +++A A + + + LT Sbjct: 99 IPMSVRAMKAGAVDFLSK--PFRDQDMLDAVTAALERDAQHRAEAATKEDIRAQYGTLTA 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE + G ++++A +GLS TV + G+ K+ + + KA G Sbjct: 157 REREVMGHVTAGLMNKQVAALIGLSEITVKIHRGNVMRKMGVRSLADLVRKAEALG 212 >gi|309812489|ref|ZP_07706242.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] gi|308433544|gb|EFP57423.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] Length = 253 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + LT RE L L G ++ +IA + LS+++V +Y+ + K+ +R Sbjct: 167 IAGEWPGREEGLTPREAEVLALITQGLSNNDIAAQTHLSINSVKSYIRTGYRKIGVTSRS 226 Query: 223 QAIAKAIRFGY 233 QA+ +R G+ Sbjct: 227 QAVLWGVRHGF 237 >gi|260767312|ref|ZP_05876252.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP 102972] gi|260617719|gb|EEX42898.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP 102972] Length = 216 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%) Query: 143 NEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E+I + V + L + A LT RE L+ G ++ ++AE Sbjct: 120 AEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRELQILRSLQTGASNMQMAEN 179 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L +S TV ++L KL NR QAI A Sbjct: 180 LFISEFTVKSHLYQIFKKLSVKNRTQAITWA 210 >gi|300771877|ref|ZP_07081748.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761263|gb|EFK58088.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 459 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L +G +++E+ EKL +S++TV ++ + +KLD +R QA Sbjct: 397 QLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQA 448 >gi|227540152|ref|ZP_03970201.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240013|gb|EEI90028.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 465 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L +G +++E+ EKL +S++TV ++ + +KLD +R QA Sbjct: 403 QLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQA 454 >gi|145298529|ref|YP_001141370.1| DNA-binding transcriptional activator UhpA [Aeromonas salmonicida subsp. salmonicida A449] gi|142851301|gb|ABO89622.1| two-component system response regulator UhpA [Aeromonas salmonicida subsp. salmonicida A449] Length = 196 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 6/116 (5%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQ--VITDFLELFKKRSSAA 171 + V + L+ + +I A K ++ Sbjct: 76 VMLSVHDSPALIEQALQAGAKGFLSKRCSPDELIAAVRTAAHGGCYLTPDIAHKLACNSQ 135 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE QL G + IAE+LGLS TV+ + + KL N ++ + Sbjct: 136 DPLTNREREVAQLLARGLEVKAIAEQLGLSPKTVHVHRANLMDKLKVSNNVELAHR 191 >gi|123444262|ref|YP_001008230.1| two-component system response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122091223|emb|CAL14106.1| two-component system response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 196 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 25/56 (44%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A LT RE L G +IAE LGLS TV+ + + KL N ++ Sbjct: 135 AIDPLTRREREVAVLLAQGMEVRDIAESLGLSPKTVHVHRANLFAKLGVSNNVELA 190 >gi|83647885|ref|YP_436320.1| response regulator [Hahella chejuensis KCTC 2396] gi|83635928|gb|ABC31895.1| Response regulator [Hahella chejuensis KCTC 2396] Length = 203 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L +K +LT RE +++ +G ++ IA +L +S TV + K+ Sbjct: 129 EALRHKEKLRQKIESLTPRELEIMEMMIEGNANKVIAIELNISQRTVEIHRSRVMQKMGT 188 Query: 219 VNRIQAI--AKAIR 230 + Q + A R Sbjct: 189 HSLAQLVQMVLAAR 202 >gi|329924857|ref|ZP_08279807.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328940393|gb|EGG36719.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 223 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAG 186 + S +A + I+ A ++ + + S + LTERE +L Sbjct: 119 MIASIRDTIAGQFILPA-PVAAKLAARMNRMSEGHSGLRKNRLDRIRLTEREEELARLMV 177 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G + EIA+ L ++ T Y+ + KL+ V+R QAI + Sbjct: 178 QGLNNREIADMLHIAEGTARNYISNLYSKLEVVDRAQAIVR 218 >gi|330809462|ref|YP_004353924.1| two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377570|gb|AEA68920.1| putative two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 216 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 3/96 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAE 196 + +++A A Q + ++ + + LT RE + A G +++IA Sbjct: 116 PFREQDLLDAVSAALQADVKRRAVERQLADLHARYETLTAREKEVMTFAAKGLMNKQIAG 175 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ LS TV + G A K+ A + + A G Sbjct: 176 QMNLSEITVKIHRGHAMKKMHAKSFADLVRMAESLG 211 >gi|312173141|emb|CBX81396.1| Nitrate/nitrite response regulator protein homolog [Erwinia amylovora ATCC BAA-2158] Length = 209 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ SE L ++I A G + + + + LT RE L+ Sbjct: 100 AGAEGYLLKDSEPEDLLAQIIEVAEGRVARSPCLQASGPVESWKCDPLATLTPREQEVLK 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G ++++AE L +S TV ++ + KL+ +R+ A + Sbjct: 160 EVASGLPNKQVAENLAISEQTVKVHIRNVLRKLNVRSRVAATVLWLE 206 >gi|296187029|ref|ZP_06855429.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296048467|gb|EFG87901.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] Length = 219 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + LT RE L G ++ +I+EK ++ +TV ++ Sbjct: 127 YFDSYFVDSIINKDTDLPNKLELLTNREREILIEVAKGLSNPKISEKFFITENTVKKHIN 186 Query: 211 SATVKLDAVNRIQAIAK 227 KL+ +R +A Sbjct: 187 HILNKLNIKDRTEAALY 203 >gi|255526738|ref|ZP_05393640.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|255509573|gb|EET85911.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] Length = 215 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + LT RE L G ++ +I+EK ++ +TV ++ Sbjct: 123 YFDSYFVDSIINKDTDLPNKLELLTNREREILIEVAKGLSNPKISEKFFITENTVKKHIN 182 Query: 211 SATVKLDAVNRIQAIAK 227 KL+ +R +A Sbjct: 183 HILNKLNIKDRTEAALY 199 >gi|226939138|ref|YP_002794209.1| Response regulator [Laribacter hongkongensis HLHK9] gi|226714062|gb|ACO73200.1| Response regulator [Laribacter hongkongensis HLHK9] Length = 225 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 24/197 (12%) Query: 43 DFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG 102 D P RQ L L + + + + D + + + Sbjct: 19 DEPFRQSLTFLLESSGWSTVEYDSAAAFLAADPPYPGAGCLI-------LDIRMPRMNGL 71 Query: 103 QLSVRLEGGLLPFAGIAFPV--RLGFHK-----NGYVIFTSEFLMLANEV-----IIEAH 150 +L L G FPV G ++FL +E+ Sbjct: 72 ELYQEL-----VRRGSTFPVLFMTGHGDVELAVEAMKAGATDFLQKPFREQQLLTALESA 126 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 Q+ + ++ LT RE LA G+ ++ IA +LG+S TV+++ Sbjct: 127 HRHGQMRQRLRDSRQQAQDRLDRLTPREYEIACLAAAGHPNKRIAAQLGISEKTVHSHRL 186 Query: 211 SATVKLDAVNRIQAIAK 227 + K A N + Sbjct: 187 NLMDKTGAGNLADLVRL 203 >gi|261340312|ref|ZP_05968170.1| response regulator UvrY [Enterobacter cancerogenus ATCC 35316] gi|288317402|gb|EFC56340.1| response regulator UvrY [Enterobacter cancerogenus ATCC 35316] Length = 218 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K +S L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 EKTASPFACLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|119897667|ref|YP_932880.1| transcriptional regulator [Azoarcus sp. BH72] gi|119670080|emb|CAL93993.1| probable transcriptional regulatory protein [Azoarcus sp. BH72] Length = 212 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +IE + D + +LT+RE L L G +++IA+ LG+S+ T Sbjct: 119 ALIEHCLQQERASRDKRRQEADTARRLEHLTQREREVLDLIIAGKLNKQIADVLGISIKT 178 Query: 205 VNAYLGSATVKLDAVNRIQAI 225 V + K+ A + + + Sbjct: 179 VEVHRARVMEKMGAHSLAELV 199 >gi|330961081|gb|EGH61341.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 99 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 39/86 (45%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L + +S LT R+ L L G T++EIA +L S HTV ++ Sbjct: 13 LLQRIQALLSGELPEPRTIASTPLTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRSH 72 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + L A R +A A R G + Sbjct: 73 VQAILTILQASCRTEAADTARRLGLV 98 >gi|313832363|gb|EFS70077.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] Length = 218 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217 Query: 234 I 234 + Sbjct: 218 L 218 >gi|271961819|ref|YP_003336015.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504994|gb|ACZ83272.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + ++R LT RE L G G ++ EI+ +L ++ T ++ KL +R Sbjct: 138 AVPERRPQEVGGLTPREREVLACIGRGMSNAEISVELDMAEATTKTHVSRLLNKLGLRSR 197 Query: 222 IQAIAKAIRF 231 +QA A Sbjct: 198 VQAAILAQEL 207 >gi|226360785|ref|YP_002778563.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226239270|dbj|BAH49618.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 889 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ R+ L+ RE G T++EIA KL LS TV ++ KL R Sbjct: 814 EVPAGRTRPEDTLSPREQEVAAHVAAGMTNKEIAAKLVLSPRTVEGHVEHILEKLGMSRR 873 Query: 222 IQ-AIAKAI 229 + A A A Sbjct: 874 HEIAAAFAH 882 >gi|226307953|ref|YP_002767913.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226187070|dbj|BAH35174.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 212 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + + + + L+++E + L G+G T+ EI +L L+ TV Y Sbjct: 126 LDSRATEALMQRIR-SDRTADPLAELSDQERAVFDLIGEGLTNREIGARLFLAEKTVKNY 184 Query: 209 LGSATVKLDAVNRIQAIAKA--IRFG 232 + KL R QA A IR G Sbjct: 185 VTRLLSKLGMQRRTQAAVLATEIRSG 210 >gi|194291672|ref|YP_002007579.1| response regulator, luxr family [Cupriavidus taiwanensis LMG 19424] gi|193225576|emb|CAQ71522.1| putative response regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 213 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +L+++E +Q+ G +++EI + L +S TV+ + KL A + + I Sbjct: 143 DEAERLASLSDKELVVMQMLAKGMSNKEIGQVLFISNKTVSTHKTRVMEKLGAKSIVDVI 202 Query: 226 AKAIRFGY 233 A R Sbjct: 203 DFARRHHI 210 >gi|167765236|ref|ZP_02437349.1| hypothetical protein BACSTE_03624 [Bacteroides stercoris ATCC 43183] gi|167696864|gb|EDS13443.1| hypothetical protein BACSTE_03624 [Bacteroides stercoris ATCC 43183] Length = 204 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 157 ITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 I L ++ + S L++RE + G T++ IA+KL LS+HTV + + Sbjct: 116 INRLLHTEEEDEKDSEQETLSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIAR 175 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL + AI + Sbjct: 176 KLQIHSPAGLTIYAIVNKLV 195 >gi|146280789|ref|YP_001170942.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501] gi|145568994|gb|ABP78100.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501] Length = 218 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + + +LT RE L LAG G ++ EIAE+L LS HT+ +++ + K+ A NR Sbjct: 140 RRMRQLAESKTSLTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNR 199 Query: 222 IQAI 225 +A Sbjct: 200 AEAA 203 >gi|124266219|ref|YP_001020223.1| response regulator protein [Methylibium petroleiphilum PM1] gi|124258994|gb|ABM93988.1| response regulator protein [Methylibium petroleiphilum PM1] Length = 217 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 8/138 (5%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY--- 154 +L+ L A + + + + ++I C Sbjct: 72 ELTRLLAQRHPAVAVLVLSMYDNPEYVQQAMQAGARGYVLKDAPSADIIAAIEAVCAGGT 131 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + + + ++ RE+ L DG +S++IAE+L LSV TV + + Sbjct: 132 FLSPSVSKRLFRGQAPKPLVSHRESEILACLADGLSSKQIAERLDLSVRTVETHRQNIKR 191 Query: 215 KLDAVNRIQAIAKAIRFG 232 KL + + I A+ G Sbjct: 192 KLGIEGQAELIKYAVEHG 209 >gi|330985150|gb|EGH83253.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 215 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201 Query: 224 AIAKAIRF 231 A + Sbjct: 202 AALLLQQL 209 >gi|312194794|ref|YP_004014855.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226130|gb|ADP78985.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 219 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G + + + A +++ A + + L + L +RE L G+G Sbjct: 104 VGADLVGAIHAVAAGRSLLD--PAVTRRVLHRLREGPVQDPRLAPLGDREREVFHLLGEG 161 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ +IA +LGLS TV Y+ S KL +R QA A + Sbjct: 162 LSNRQIAGRLGLSDKTVKNYVSSMLSKLRLTSRTQAAILATK 203 >gi|146277747|ref|YP_001167906.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17025] gi|145555988|gb|ABP70601.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 219 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 27/209 (12%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L ++ I F + P + L+ + ++ Sbjct: 22 LSDMKGAFLQIAQA----GF-YVALRLGFYSPEDE-----LNTFPDQFVELYTARGLALQ 71 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHKNGY 131 D + + + W +I + + G + R K + Sbjct: 72 DPLMRWTFTNHGALRWSAIDLPDPLGVMARY-----RQYGMRYGATMCLVGRGAVPKKSF 126 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 IF + II+ + + + LTE + L++ G Sbjct: 127 GIFARADREFTDAEIIDLRELLTALHVN----------EPQTLTESQVEVLRMLSTGMRY 176 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +++A LG+S V A L A +++A Sbjct: 177 KQMAYALGISESAVKARLKGAAQRMNAKT 205 >gi|330811339|ref|YP_004355801.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379447|gb|AEA70797.1| Putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 208 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRN 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|288962972|ref|YP_003453266.1| two-component response regulator [Azospirillum sp. B510] gi|288915238|dbj|BAI76722.1| two-component response regulator [Azospirillum sp. B510] Length = 216 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A LT ++ L +G +++IA ++ ++ TV A++ + KL + R Q Sbjct: 138 APDPARRAATLTPQQLRVLAGIAEGKLNKQIAYEMNVAETTVKAHVTTILRKLGVLTRTQ 197 Query: 224 AIAKAIRFGY 233 A A + Sbjct: 198 AAVLASQLAL 207 >gi|282897990|ref|ZP_06305985.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281197134|gb|EFA72035.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 229 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L S +++ RE L+L G ++ EI KL LS TV Y+ S K + NR Sbjct: 157 LNHPDSHILMSISTREREVLELLTHGLSNAEIGSKLYLSPRTVEKYVSSLLRKTSSNNRA 216 Query: 223 QAIAKAIRFGYI 234 + + AI+ + Sbjct: 217 ELVRFAIKHDIV 228 >gi|226357955|ref|YP_002787695.1| transcriptional regulator, LuxR family [Deinococcus deserti VCD115] gi|226320198|gb|ACO48191.1| putative transcriptional regulator, LuxR family [Deinococcus deserti VCD115] Length = 763 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + E + + LE + A+ LT RE + L G + + +A+ LG+S+ T Sbjct: 670 LPELRTEIDRWLNLPLERNSPATPPAQGGLTSRERDVVALVAAGMSDKRVAQVLGISMGT 729 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V+ ++G KL+ NR++ AI G Sbjct: 730 VSKHVGHVLEKLELRNRVELARWAIEHGI 758 >gi|167916620|ref|ZP_02503711.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] Length = 89 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ + LT +E L+L G +++EIA + + TV +L + KLDA +R A+ Sbjct: 17 PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 76 Query: 226 AKAIRFGYI 234 +A+ G + Sbjct: 77 RRALVLGLL 85 >gi|330960741|gb|EGH61001.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 207 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +A LT R+ L L G T++EIA+ LG+S TV ++ S L R Sbjct: 136 FNESAVNALSPLTARQKQVLSLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRA 195 Query: 223 QAIA 226 A A Sbjct: 196 AAAA 199 >gi|307324110|ref|ZP_07603319.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890559|gb|EFN21536.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT+RE ++ G T+EE+A L +++ TV +LG+ KL A NR Sbjct: 160 RRRGRPEDLIEPLTQREREVVRRVARGRTNEEVAVDLHVTLSTVKTHLGNVQRKLAARNR 219 Query: 222 IQAIAKAIRFGYI 234 ++ A A G + Sbjct: 220 VEIAAWAWEHGMV 232 >gi|262043446|ref|ZP_06016569.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039188|gb|EEW40336.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 235 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 158 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 217 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 218 THLAIRHGL 226 >gi|240172696|ref|ZP_04751355.1| two component LuxR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length = 215 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++ A LTERE + + DG + +IA +L L+ T+ ++ S KL +R Sbjct: 142 EVTRRGRGATTLLTEREAQVITMMADGLSVPQIASRLHLARSTIKTHVHSLYEKLGVSDR 201 Query: 222 IQAIAKAIRFGYI 234 A+A+A+R + Sbjct: 202 GAAVAEAMRRRLL 214 >gi|83719569|ref|YP_443189.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|167582209|ref|ZP_02375083.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|167620367|ref|ZP_02388998.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257139423|ref|ZP_05587685.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83653394|gb|ABC37457.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 210 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 14/184 (7%) Query: 65 PNILIETYGDDFLFHFNSGLLP---IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 ++ D P +I E + + G I Sbjct: 27 DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAADGLAMLSAIRDGHPSVRVIVLT 86 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-----------LFKKRSSA 170 + + +L+ ++ + L + + A Sbjct: 87 MLDNPVLMHTMRQAGALAVLSKRGDLDELPRAVAAVCQGRAFVGTHAGAASGLAMRATDA 146 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE ++L G T +IA + G S+ TV+ + +A KL + + A Sbjct: 147 PPQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 206 Query: 231 FGYI 234 G + Sbjct: 207 NGLV 210 >gi|332666002|ref|YP_004448790.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332334816|gb|AEE51917.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 207 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H A L L K LT+RE ++L G T+++IA +L ++++T+ ++ Sbjct: 123 HAAQANRHVPELTLDKLNKHLLAPLTDREFEVVRLLYAGKTNQQIAAELYIAMNTLKKHI 182 Query: 210 GSATVKLDAVNRIQAIA--KAIRFG 232 +A KLD +R A+A +A+ G Sbjct: 183 NNAYFKLDVGSRTTAVATLRALMVG 207 >gi|326776946|ref|ZP_08236211.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326657279|gb|EGE42125.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 344 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ RE + L G ++++IA +S TV ++ KL + +R +AIA Sbjct: 277 RLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIA 330 >gi|282853480|ref|ZP_06262817.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582933|gb|EFB88313.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922223|gb|EFS86054.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965305|gb|EFT09404.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|315104424|gb|EFT76400.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327329402|gb|EGE71162.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1] Length = 206 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G F + ++ A + I L + L++RE L+ Sbjct: 97 RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSDREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARHRGWL 206 >gi|270260780|ref|ZP_06189053.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044264|gb|EFA17355.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 201 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 2/101 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 NG+V S L IE A + + + LT +E L L Sbjct: 96 AGANGFVHKGSRLEQLV--QAIETVLAGEPSFPAAAMAEETQPAEGVLLTPKELQILGLL 153 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G ++ +IAE L +S TV+ + + K A N ++ +A Sbjct: 154 SKGLSNLQIAEMLNISNKTVSTHKKNILRKTGASNLLELVA 194 >gi|269138242|ref|YP_003294942.1| two-component response regulator EsrB, LuxR family [Edwardsiella tarda EIB202] gi|61743009|gb|AAX55229.1| EsrB [Edwardsiella tarda] gi|237861358|gb|ACR24241.1| EsrB [Edwardsiella tarda] gi|267983902|gb|ACY83731.1| two-component response regulator EsrB, LuxR family [Edwardsiella tarda EIB202] gi|304558285|gb|ADM40949.1| EsrB [Edwardsiella tarda FL6-60] Length = 214 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 6/100 (6%) Query: 141 LANEVIIEAHGACY--QVITDFLELFK----KRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ A + L L + LT RE L+L +G + +I Sbjct: 113 PQQTLLAAMQHASLGKTFVDPALRLDSLVASSDMAQEPPLTLRERQILKLVAEGKRNRDI 172 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L +S+ TV + + KLDA N + A R G + Sbjct: 173 AELLSISLKTVETHRLNLMRKLDAHNAAELSNWARRLGVL 212 >gi|104780420|ref|YP_606918.1| response regulator [Pseudomonas entomophila L48] gi|95109407|emb|CAK14107.1| putative response regulator, LuxR family [Pseudomonas entomophila L48] Length = 208 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G +++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 ERLSGREMMVLQQLARGKSNKEIADSMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRH 205 Query: 232 GY 233 G Sbjct: 206 GL 207 >gi|38637927|ref|NP_942901.1| nitrate/nitrite response regulator [Ralstonia eutropha H16] gi|32527265|gb|AAP86015.1| nitrate/nitrite response regulator [Ralstonia eutropha H16] Length = 220 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +Q G +++EIA LG++ TV ++ + KL+ +R+Q A+ Sbjct: 156 RLTVREREIVQELARGESNKEIARTLGVAASTVKIHVQNILKKLNLASRVQVAVYAVEHR 215 Query: 233 Y 233 Sbjct: 216 L 216 >gi|59712234|ref|YP_205010.1| response regulator [Vibrio fischeri ES114] gi|197335434|ref|YP_002156448.1| response regulator UvrY [Vibrio fischeri MJ11] gi|34978694|gb|AAQ83589.1| GacA [Vibrio fischeri ES114] gi|59480335|gb|AAW86122.1| DNA-binding response regulator in two-component regulatory system with GacS [Vibrio fischeri ES114] gi|197316924|gb|ACH66371.1| response regulator UvrY [Vibrio fischeri MJ11] Length = 214 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + + L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 133 MALSQFTPDAENPFKELSERELQIMMMITKGEKVTDISEQLNLSPKTVNSYRYRLFSKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 ISGDVELTHLAIRHGIL 209 >gi|326439852|ref|ZP_08214586.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 202 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++A DG + EIA +L LSV TV YL + KL+A NR+ AI A G Sbjct: 140 PLTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESG 199 Query: 233 YI 234 ++ Sbjct: 200 WL 201 >gi|323956264|gb|EGB52010.1| luxR family protein regulatory protein [Escherichia coli H263] Length = 99 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L++ G +I+ L +S++TV ++ + K+ A N AI A R Sbjct: 38 PLSLRERQVLRMLAQGDEYSQISHNLNISINTVKFHVKNIKHKIQARNTNHAIHIANRNE 97 Query: 233 YI 234 I Sbjct: 98 II 99 >gi|293606534|ref|ZP_06688892.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292815157|gb|EFF74280.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 228 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182 GY+ S LA V + G + LT+R+ L Sbjct: 103 RAGVAGYLPKASSPDALAAAVSLVVAGGECYPQPAGRPQGAAHAPMQELRELTQRQEEIL 162 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G T EI + +G+SV TV ++ + KL+A N+ +A A++ G + Sbjct: 163 QLLVQGKTMREIGQHVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMGLV 214 >gi|312196962|ref|YP_004017023.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228298|gb|ADP81153.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 644 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A +LT RE L L +G T+ ++A +L +S T N ++ + KL NR Q Sbjct: 578 PAVFSLTAREQEVLTLLAEGLTNAQLAAELFISERTANRHVSNIYTKLGVHNRTQ 632 >gi|157145125|ref|YP_001452444.1| hypothetical protein CKO_00858 [Citrobacter koseri ATCC BAA-895] gi|227885548|ref|ZP_04003353.1| conserved hypothetical protein [Escherichia coli 83972] gi|237704399|ref|ZP_04534880.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|300985224|ref|ZP_07177331.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|300992309|ref|ZP_07179853.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|301051392|ref|ZP_07198205.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|157082330|gb|ABV12008.1| hypothetical protein CKO_00858 [Citrobacter koseri ATCC BAA-895] gi|226900765|gb|EEH87024.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227837488|gb|EEJ47954.1| conserved hypothetical protein [Escherichia coli 83972] gi|300296962|gb|EFJ53347.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|300306567|gb|EFJ61087.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|300406827|gb|EFJ90365.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|315286934|gb|EFU46351.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3] gi|315290140|gb|EFU49521.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1] gi|324010292|gb|EGB79511.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1] Length = 74 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L++ G +I+ L +S++TV ++ + K+ A N AI A R Sbjct: 13 PLSLRERQVLRMLAQGDEYSQISHNLNISINTVKFHVKNIKHKIQARNTNHAIHIANRNE 72 Query: 233 YI 234 I Sbjct: 73 II 74 >gi|6690676|gb|AAF24244.1| Nnr [Rhodobacter sphaeroides] Length = 212 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + + + +LTER+ + G +++ IA +L L TV ++ Sbjct: 123 RQSHGAARRPPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGELNLCESTVKVHIR 182 Query: 211 SATVKLDAVNRIQAIAK 227 + KL A NR +A K Sbjct: 183 NIMKKLGAKNRTEAAFK 199 >gi|311898486|dbj|BAJ30894.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 1030 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Query: 151 GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ + L L ++ + A LT RE L+ G ++ +IAE+L +S T + Sbjct: 935 RRDAALLAERLGLGARKGAPAEEGLGLTPRERDVLRQLARGRSNRQIAEQLFISPKTASV 994 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ + KL R +A A A R Sbjct: 995 HVSNILAKLAVGGRGEAAALAHRLRL 1020 >gi|270264708|ref|ZP_06192973.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041391|gb|EFA14490.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 210 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NLT R+ L + G+ ++ IA +L +S TV ++ + K+ +R++AI Sbjct: 147 NLTPRQIDVLIMMMRGFPNKRIAAQLSISEPTVKEHISNILKKIGVNSRVEAI 199 >gi|290962906|ref|YP_003494088.1| response regulator [Streptomyces scabiei 87.22] gi|260652432|emb|CBG75565.1| putative response regulator [Streptomyces scabiei 87.22] Length = 219 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 34/72 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R +TERE L+L +G++S EIA L +SV TV + + KL +R Sbjct: 145 RARAGDRLPERPITEREEEILKLVAEGHSSREIARLLVISVKTVERHRANLLHKLGLRDR 204 Query: 222 IQAIAKAIRFGY 233 + AIR G Sbjct: 205 LDLTRYAIRTGL 216 >gi|239990355|ref|ZP_04711019.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447364|ref|ZP_06586754.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291350311|gb|EFE77215.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 315 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ RE + L G ++++IA +S TV ++ KL + R +AIA Sbjct: 248 GLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSATRSEAIA 301 >gi|271965986|ref|YP_003340182.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509161|gb|ACZ87439.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 223 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 17/127 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNL----- 174 L +G+++ S L + + A G L ++ S A L Sbjct: 93 LRAGASGFLLKDSPPEDLLTAIRVVAAGEALLTPAATRRLIERFTATPPSPADRLPESTP 152 Query: 175 --------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 T+RE L G ++ EIA L L+ T+ +L + K +A +R Q + Sbjct: 153 SRKILATLTDRERDVLARVARGMSNAEIAADLVLATSTIKTHLTNLLAKTEARDRAQLVI 212 Query: 227 KAIRFGY 233 A G Sbjct: 213 FAYESGL 219 >gi|227113251|ref|ZP_03826907.1| DNA-binding transcriptional activator UhpA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 196 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE G +EIA +LGLS TV+ + + KL N ++ + Sbjct: 136 DPLTRRERQVATKLAQGIAVKEIAAELGLSPKTVHVHRANLMEKLGVGNDVELARR 191 >gi|218754218|ref|ZP_03533014.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis GM 1503] Length = 898 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 810 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 869 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 870 YTKLGLSSRLQLAQQAARRG 889 >gi|83648198|ref|YP_436633.1| response regulator [Hahella chejuensis KCTC 2396] gi|83636241|gb|ABC32208.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 201 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + + R L+ G +++EIA+ LG+S TV Y+ L NR QA+ A + Sbjct: 137 PSFSPRHLETLEYLTQGLSNKEIAKNLGISDITVRQYVSDIIDHLGVENRTQAVMAAKKR 196 Query: 232 GYI 234 G I Sbjct: 197 GII 199 >gi|26987826|ref|NP_743251.1| LuxR family DNA-binding response regulator [Pseudomonas putida KT2440] gi|24982525|gb|AAN66715.1|AE016299_11 DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440] gi|313497456|gb|ADR58822.1| Two component LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 207 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + L+ RE + LQ G +++EIA+ + LS TV+ Y Sbjct: 126 NQALHASRGRGAGSETDMVNRLSAREMTVLQQLARGRSNKEIADSMYLSNKTVSTYKSRL 185 Query: 213 TVKLDAVNRIQAIAKAIRFGY 233 +KL+A + + I A R G Sbjct: 186 LLKLNARSLVDLIELAQRQGL 206 >gi|330946720|gb|EGH47657.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi str. 1704B] Length = 88 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 15 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 74 Query: 224 AIAKAIRF 231 A + Sbjct: 75 AALLLQQL 82 >gi|318061538|ref|ZP_07980259.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076628|ref|ZP_07983960.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 219 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ IAE+LGLS TV AY+ +L NR++A A G Sbjct: 154 LTPREREVLVLLAGGLSNAGIAERLGLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 213 >gi|300788042|ref|YP_003768333.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797556|gb|ADJ47931.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + +I + S LT+RE L G T+ EI E+ Sbjct: 119 HAAATGDALIAPSVTARLLDAFAGTGSGAPSQPIEPLTDREEQVLLSVARGRTNREITEE 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L +++ TV ++ S KL A NR++ A Sbjct: 179 LYITLSTVKTHIASLMAKLGARNRVEIAIWAHE 211 >gi|220913336|ref|YP_002488645.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860214|gb|ACL40556.1| transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 552 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 2/161 (1%) Query: 75 DFLFH-FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + + + +P+ V +G G Sbjct: 390 PMVRAVAAQADGAVRLAEADPLGACTALRRAWRLWSDLGVPYEAARCRVLIGQACLGLGD 449 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSE 192 TS + L+ L + R A LT RE LQL G + Sbjct: 450 ETSADMELSAAHEALTGLGAAPAAAWAASLMPRGRGKGAGPLTPREEQVLQLVASGQGNR 509 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IA L LS TV ++ + +KL +R A A G Sbjct: 510 AIAVGLFLSEKTVARHVSNIFLKLGLTSRTAATRYAFEHGL 550 >gi|118469421|ref|YP_888705.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118170708|gb|ABK71604.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 759 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT +E L+L + +I ++L +S++TV + + KL NR A+A+ Sbjct: 696 AEDLTSKELEVLRLLATRLSRRDIGQRLYVSLNTVKTHQRAIYRKLGVDNRNSAVARGRE 755 Query: 231 FGYI 234 G + Sbjct: 756 LGLL 759 >gi|50841545|ref|YP_054772.1| two-component response regulator [Propionibacterium acnes KPA171202] gi|289424302|ref|ZP_06426085.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289427423|ref|ZP_06429136.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129584|ref|YP_003580247.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|50839147|gb|AAT81814.1| two-component response regulator [Propionibacterium acnes KPA171202] gi|289154999|gb|EFD03681.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289159353|gb|EFD07544.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291377074|gb|ADE00929.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313764963|gb|EFS36327.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771147|gb|EFS37113.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313792510|gb|EFS40596.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803511|gb|EFS44693.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806915|gb|EFS45413.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811827|gb|EFS49541.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814163|gb|EFS51877.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815476|gb|EFS53190.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817698|gb|EFS55412.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821475|gb|EFS59189.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824580|gb|EFS62294.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826251|gb|EFS63965.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829041|gb|EFS66755.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313832822|gb|EFS70536.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313839682|gb|EFS77396.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916271|gb|EFS80102.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314917541|gb|EFS81372.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921874|gb|EFS85705.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926277|gb|EFS90108.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314955212|gb|EFS99617.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959216|gb|EFT03318.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961718|gb|EFT05819.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964222|gb|EFT08322.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969024|gb|EFT13122.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314975255|gb|EFT19350.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977670|gb|EFT21765.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314985145|gb|EFT29237.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314990454|gb|EFT34545.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078871|gb|EFT50889.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315081685|gb|EFT53661.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083141|gb|EFT55117.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086668|gb|EFT58644.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315097105|gb|EFT69081.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099710|gb|EFT71686.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102251|gb|EFT74227.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315107664|gb|EFT79640.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|315109807|gb|EFT81783.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327332558|gb|EGE74293.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327333731|gb|EGE75448.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327334616|gb|EGE76327.1| two-component system response regulator [Propionibacterium acnes HL097PA1] gi|327444410|gb|EGE91064.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327446663|gb|EGE93317.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448894|gb|EGE95548.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327454307|gb|EGF00962.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456372|gb|EGF03027.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327457356|gb|EGF04011.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328756067|gb|EGF69683.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757917|gb|EGF71533.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328758912|gb|EGF72528.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328759757|gb|EGF73353.1| two-component system response regulator [Propionibacterium acnes HL099PA1] gi|332674453|gb|AEE71269.1| two-component response regulator [Propionibacterium acnes 266] Length = 218 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217 Query: 234 I 234 + Sbjct: 218 L 218 >gi|73539827|ref|YP_294347.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72117240|gb|AAZ59503.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 210 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178 +R G + L+ A + + + D L + + L+ERE Sbjct: 94 IRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSAAVADLLIGGLDKPTEQPVHQMLSERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + IA++L LSV TV+ Y K+ AI+ G + Sbjct: 154 FQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209 >gi|307823586|ref|ZP_07653815.1| two component transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307735571|gb|EFO06419.1| two component transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 297 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE L+L GY ++EIA+ L +S+ TV + + K +A N ++ A + G Sbjct: 152 NLTSREAQLLKLIAAGYKNKEIADSLCISLKTVETHRATLMRKFNAHNVATLLSVANQAG 211 >gi|284046774|ref|YP_003397114.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950995|gb|ADB53739.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 992 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 3/110 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQ 183 + G E LA + A + S A LT RE L Sbjct: 880 QRLGAAWLVGEVDALAARARLSLDDAGSSPAAARGDGAAGGSPAEADPFGLTPRERQVLT 939 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G T+ EI L ++ T + ++ KLD +R QA A A R G Sbjct: 940 LVASGATNREIGSALFMAEKTASVHVSRILAKLDVRSRTQAAAVAHRLGL 989 >gi|282866538|ref|ZP_06275581.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558585|gb|EFB64144.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 220 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183 + T + + S R L+ RE L+ Sbjct: 109 AGGVKGYVVTGTRTNIGHPGRPGMAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLR 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++ I +GLS TV ++L KL +R +A A+R G I Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|206564661|ref|YP_002235424.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198040701|emb|CAR56687.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 214 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211 >gi|167567044|ref|ZP_02359960.1| DNA-binding response regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167574121|ref|ZP_02366995.1| DNA-binding response regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 215 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 99 VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGLAARMIHASAEASPLDRLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 159 ERDILDALAQGLSSKQIAQQNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212 >gi|160938403|ref|ZP_02085758.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC BAA-613] gi|158438776|gb|EDP16533.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC BAA-613] Length = 222 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 D+ L ++ LT+ E + G ++ EIAE L LS TV Y Sbjct: 134 LRLFSQMAQADYSILVGDKN--VDELTKTEWKIIAQVEVGASNREIAEALKLSEGTVRNY 191 Query: 209 LGSATVKLDAVNRIQAIAKAIR 230 L + KLD +R Q A++ Sbjct: 192 LSTILNKLDLRDRTQLAIWAVQ 213 >gi|110804545|ref|YP_688065.1| transcriptional regulator FimZ [Shigella flexneri 5 str. 8401] gi|110614093|gb|ABF02760.1| fimbrial Z protein [Shigella flexneri 5 str. 8401] Length = 226 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE + L+ G +++EIA+KL LS TV+A+ + KL + ++ I A Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIRLA 225 >gi|29833873|ref|NP_828507.1| LuxR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29610998|dbj|BAC75042.1| putative LuxR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 900 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + + L+ RE LQ + ++EEIA L +SV+TV +L S KL R Sbjct: 829 VDQPPAPVVEELSGREREVLQRLAEMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVNRRH 888 Query: 223 QAIAKAIRFGYI 234 A+ +A + Sbjct: 889 DAVRRARELRLL 900 >gi|1934734|emb|CAA73019.1| FlcA [Azospirillum brasilense] Length = 215 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT+R+ L G ++++IA +LGLS TV ++ + L NR Q Sbjct: 153 AYGLTQRQREVLDCLRAGKSNKQIAYELGLSEGTVKIHVTAIFKSLGVKNRTQ 205 >gi|71733679|ref|YP_275938.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487038|ref|ZP_05641079.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625994|ref|ZP_06458948.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651490|ref|ZP_06482833.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298488235|ref|ZP_07006270.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554232|gb|AAZ33443.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157243|gb|EFH98328.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323080|gb|EFW79169.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329648|gb|EFW85637.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330868582|gb|EGH03291.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878032|gb|EGH12181.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|331009320|gb|EGH89376.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 215 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201 Query: 224 AIAKAIRF 231 A + Sbjct: 202 AALLLQQL 209 >gi|302036473|ref|YP_003796795.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300604537|emb|CBK40869.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 214 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 36/75 (48%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G Q + + + LT+RE L A G +++EIA++L +S+ TV +L Sbjct: 133 GFAKQAVALVNKQEELSGGGLSLLTDREHEMLACAAAGRSNKEIADQLCVSLDTVKTHLH 192 Query: 211 SATVKLDAVNRIQAI 225 KL R++A+ Sbjct: 193 HIYQKLRVSGRVEAV 207 >gi|294817012|ref|ZP_06775654.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|294321827|gb|EFG03962.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] Length = 348 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 16/234 (6%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 S + ++ + + + + + ++ A Q + LD Sbjct: 128 SGPVSSVRELRGIDAVQTCVEKACHECR-EEIQVFVPGGA------QPGDVLASSQPLDL 180 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + +Y P + E E + L + Sbjct: 181 LLLERSARVSY---VYQGSIRNDRPTSEYAQWLVEQGAEVRTVPHLPLRVIIWDRRTALV 237 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P+ G + +S + A + + E ++ L ++E++ Sbjct: 238 PIDPAAPDAGAFLLSSPGPVAALQSLFEQVWQRAARFG-----EERDRERDGALADQESA 292 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T E IA KLG+SV T + +L A +R Q A A G++ Sbjct: 293 VLGLLAAGLTDEVIARKLGVSVRTSRRVTAALMNRLGARSRFQLGALAAERGWL 346 >gi|227539554|ref|ZP_03969603.1| possible transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227240619|gb|EEI90634.1| possible transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 130 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +QL DG+ S+ I+EKL +S +TV + KL+ N + + A+++ Sbjct: 69 RLTNREIQIIQLICDGHNSKVISEKLFISFNTVETHRKHIFQKLNIKNSLGLLRLALQYD 128 Query: 233 YI 234 I Sbjct: 129 LI 130 >gi|256374257|ref|YP_003097917.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918560|gb|ACU34071.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 209 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 5/112 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETS 180 +GY++ L + V A G + ++ LTE+E Sbjct: 97 AGASGYLLKQVRGQDLVHAVREVAAGRSLLDPVTTSRVLERMRKPQEPDELATLTEQERR 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L G+G ++ +IAE+L ++ TV ++ + KL R QA A R G Sbjct: 157 VLSLIGEGLSNRQIAERLFVAEKTVKNHVTAVLSKLGMERRTQAAAWVARRG 208 >gi|239625806|ref|ZP_04668837.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239520036|gb|EEQ59902.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 252 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L+L G +++EI EKL +S TV + + K +R Q Sbjct: 194 ELTEREEEILKLLSHGASTQEICEKLVISTSTVKKHTYNIYNKTGVKSRTQL 245 >gi|213962803|ref|ZP_03391063.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] gi|213954460|gb|EEB65782.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] Length = 214 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L LA +G S+EI+EKL +S+HTVN + + KL N I+AI Sbjct: 161 LTPREREILALAKEGMFSKEISEKLNISIHTVNRHRQNILEKLQVDNIIEAIR 213 >gi|171915297|ref|ZP_02930767.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 229 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 48/152 (31%), Gaps = 16/152 (10%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138 + E + +L RL G L+ A + V K + Sbjct: 71 VDLELPAMNGAELISRLAGKLICAAFVVLTVHDDSAKVFAALRAGAHGYLLKGSKPGEIL 130 Query: 139 ---LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + +I F E K LT RE L+ G +E+A Sbjct: 131 AGIRAASEGGAPLSQEISRLLIQSFQEPPKVEKRTIPGLTPREAQILERLAQGMAPKEVA 190 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L LS TV YL KL +R +A+ K Sbjct: 191 YDLSLSYETVRDYLKGVYQKLHVRSRTEAVIK 222 >gi|154252823|ref|YP_001413647.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] gi|154156773|gb|ABS63990.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] Length = 208 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 5/115 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNLTE 176 P+ + K G + F ++ + +I+A ++ L + S LT Sbjct: 89 VPMSVAAMKAGAIEFLTK--PFREQELIDAVHRGVEIDRERRAALTSLAELRSRFETLTP 146 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE + L G +++IA +L LS TV + K+ A + A R Sbjct: 147 REREIIALVVTGQMNKQIAAELNLSEVTVKVHRAQVMRKMQAKTLPDLVRYADRL 201 >gi|111225726|ref|YP_716520.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111153258|emb|CAJ65009.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 203 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 151 GACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G V+ + + + + LT RE L+L G ++ + A +LG+S TV + Sbjct: 115 GLAALVLGEMSRAARDVTATPSTPRLTAREIEVLRLIAKGLSARDAAARLGVSHRTVQNH 174 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + + KL NR++ A+R GY Sbjct: 175 VHNVLGKLQLRNRVELTRFALREGY 199 >gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 220 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 162 ELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 EL + + A LT RE L L G ++EIA +L S V Y+ K Sbjct: 136 ELNHRPAPVAIEAIDLDLTPREQEVLLLVYAGLMNKEIAGRLERSTRNVEKYVSRLLAKT 195 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R + + A+ G + Sbjct: 196 GTSSRTELVRFALEHGLV 213 >gi|307129346|ref|YP_003881362.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Dickeya dadantii 3937] gi|306526875|gb|ADM96805.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Dickeya dadantii 3937] Length = 196 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ L V A G CY L+L R LT RE + Sbjct: 91 LNAGARGFLSKRCSPDELIAAVRTVAGGGCYLTPDIALKLASGRR---DPLTRRERQVAE 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G + IA +LGLS TV+ + + KL N ++ + Sbjct: 148 KLAQGMVVKAIAAELGLSPKTVHVHRANLMEKLGVNNDVELARR 191 >gi|240142741|ref|YP_002967254.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Methylobacterium extorquens AM1] gi|240012688|gb|ACS43913.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Methylobacterium extorquens AM1] Length = 220 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 17/164 (10%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEF 138 + + +L+ R+ G + V L GY++ S Sbjct: 51 DVAVVDVSMPGLNGLELTERVAGECPGTRVLVLTVHEDAAYVQPLLRAGARGYLLKRSAA 110 Query: 139 LMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYT 190 L V A G + D + A L+ RET L+L G++ Sbjct: 111 DDLLRAVRAVASGGIYLDPSIAGHALADPSSVGGPGPGEAGEALSPRETEVLRLIAQGFS 170 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA ++ LSV +V Y A KL R + I A G++ Sbjct: 171 NKEIARRIDLSVKSVETYKARAAEKLGLRTRAEIIRYAAAQGWL 214 >gi|271967578|ref|YP_003341774.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510753|gb|ACZ89031.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 162 ELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L ++R + LTERE + + G T+ EIA +L LS TV ++ S K Sbjct: 131 RLLRRRGLPQESSSVVLTEREDQIVAMVAHGMTNAEIAAELFLSPGTVKNHIASVQNKTG 190 Query: 218 AVNRIQAIAKAIRFG 232 NR+ A A G Sbjct: 191 TRNRVAIAAWAWATG 205 >gi|77460736|ref|YP_350243.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384739|gb|ABA76252.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 208 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRN 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|84502331|ref|ZP_01000479.1| two-component response regulator [Oceanicola batsensis HTCC2597] gi|84389691|gb|EAQ02410.1| two-component response regulator [Oceanicola batsensis HTCC2597] Length = 213 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + + A + I L + LT+RE L L G G + E+A +LG++V Sbjct: 120 DGVPALSPAIARRIMHHFRLTGPLTGQDAALTDREREVLGLIGRGLRNAEVAAELGIAVS 179 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV Y+ KL +R +A A R G Sbjct: 180 TVAGYVKDTYRKLGISSRAEAAWHATRLGL 209 >gi|313498051|gb|ADR59417.1| GacA [Pseudomonas putida BIRD-1] Length = 193 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGACYQVITDF-LELFKKRSSAARNL 174 FP RL + L + I A Q+ L+ F+ + S L Sbjct: 70 FPTRLLQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLALKPFQPQGSPFDAL 129 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE + + I++KL LS TVN Y KL + ++ A+R G + Sbjct: 130 SEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 189 >gi|262225461|ref|YP_003280952.1| pCQ3_103 [Streptomyces sp. W9] gi|261597637|gb|ACX85604.1| pCQ3_103 [Streptomyces sp. W9] Length = 113 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L + + +T R+ L+L +G T+ IA +LG+S +TV + S KL Sbjct: 13 HHHLKVLPRHPADPRYTVTRRQLDILRLIANGNTTTAIARRLGISYNTVTKQVASIHRKL 72 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R QA+A A+R G + Sbjct: 73 RVSDRAQAVAVALRMGLL 90 >gi|229526804|ref|ZP_04416208.1| transcriptional regulatory protein UhpA [Vibrio cholerae bv. albensis VL426] gi|229336962|gb|EEO01980.1| transcriptional regulatory protein UhpA [Vibrio cholerae bv. albensis VL426] Length = 208 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131 FH + + I E+ L RL F I + G Sbjct: 40 FHALTQAE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98 Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + S+ + V C + + ++ +LT+RE L Sbjct: 99 QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +EIA+ L LS V+ + + KL+ N + I A++ + Sbjct: 157 VQGKEVKEIAQTLFLSHKAVHVHRANILSKLNLTNNVDVIRFALQHHLL 205 >gi|149371877|ref|ZP_01891196.1| two-component response regulator [unidentified eubacterium SCB49] gi|149355017|gb|EDM43578.1| two-component response regulator [unidentified eubacterium SCB49] Length = 223 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L +T+ EI EKL +S TV + + +K D N + AI+ Sbjct: 157 LSKRELEVLELICQQFTTVEIGEKLYISRRTVEVHRNNLLLKTDVKNVAGLVIYAIQHNL 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|85713863|ref|ZP_01044852.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] gi|85698989|gb|EAQ36857.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] Length = 216 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 3/93 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEI 194 +++ II+ A ++ + LT RE L G +++E+ Sbjct: 110 EKPFSSDAIIDRVRAAVKMWRETRGSESDGLANFPGRHLLTCREREVLSQVARGASNKEV 169 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 KLG+S TV + KL A N I Sbjct: 170 GRKLGISPRTVEVHRARIMDKLGAKNTADLIRI 202 >gi|94313944|ref|YP_587153.1| LuxR family LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357796|gb|ABF11884.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Cupriavidus metallidurans CH34] Length = 947 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 15/178 (8%) Query: 65 PNILIETYGDDFLFHFNSG-----LLPIIWQSIQEETVIESSGQLSVRLEG--GLLPFAG 117 + L + W + + + + R+ G Sbjct: 762 DPAKAAAAVGPLIDQCQRRGWQRHLAQMQWMAALADHRLGNDASARERVLAALRAGHRLG 821 Query: 118 IAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ 170 + + I ++ A + ++ + + + + R++A Sbjct: 822 LVRSLLDVDPGALDEIAALAQQPGEAPDPLLAFYISRLRATGATNPMTSARAAAPATLRT 881 Query: 171 -ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A L+ERE ++L G +++IA LGLS TV +L + KL +R +A+A+ Sbjct: 882 LAEPLSEREADVVELLGQALPNKKIARTLGLSPETVKWHLRNIFRKLGVTSRDEAVAR 939 >gi|253574622|ref|ZP_04851962.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845668|gb|EES73676.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 247 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S TERE + G +++EIA+++ +S TV Y+ S K +R Q Sbjct: 181 PSDLERFTERELEVMSRIAKGLSNKEIAKEIFISEGTVANYITSILNKTGLEHRTQIAIY 240 >gi|255533126|ref|YP_003093498.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255346110|gb|ACU05436.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 263 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L +G +S+ IA+KL +S HTV + S K + N + ++ I+ G Sbjct: 203 LSKREKEVLLWMAEGLSSKLIADKLFISEHTVINHRRSMQDKTNTPNAVALVSFCIKNGL 262 Query: 234 I 234 I Sbjct: 263 I 263 >gi|327393400|dbj|BAK10822.1| response regulator UvrY [Pantoea ananatis AJ13355] Length = 167 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 89 QKAESPFSCLSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 148 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 149 THLAIRHGL 157 >gi|304409083|ref|ZP_07390704.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307303086|ref|ZP_07582841.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304352904|gb|EFM17301.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306913446|gb|EFN43868.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 220 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205 Query: 225 IA 226 + Sbjct: 206 VI 207 >gi|226363271|ref|YP_002781053.1| serine/threonine protein kinase [Rhodococcus opacus B4] gi|226241760|dbj|BAH52108.1| putative serine/threonine protein kinase [Rhodococcus opacus B4] Length = 1084 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 7/148 (4%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAG---IAFP----VRLGFHKNGYVIFTSEFLMLANE 144 I +T + + L AG + FP R ++ Y + A Sbjct: 934 IAADTGDAKRAVVLMAAADELGRTAGSPTVGFPHLLVAREESEQSAYQALGKSSVESARR 993 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 L + LT+RE +L +G T+ IA +L +S T Sbjct: 994 EGRRLGFHAAIAYALGERLPDATGDSLVKLTKRERQVAELIAEGLTNRAIAARLVISPRT 1053 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ KL +R Q A + G Sbjct: 1054 AQGHVEHVLTKLGFTSRAQIAAWIVEQG 1081 >gi|217973035|ref|YP_002357786.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217498170|gb|ACK46363.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 220 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205 Query: 225 IA 226 + Sbjct: 206 VI 207 >gi|91784340|ref|YP_559546.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91688294|gb|ABE31494.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 210 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEE 193 + ++ A + H + + D L + + L+ERE G E Sbjct: 109 DEIVRAIRAVARGHRYLSEAVADTLADNLDKPAVGRPHEALSEREFQIFCKLAAGQIPTE 168 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE+L LSV TV+ Y K+ N AI+ G I Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209 >gi|333027679|ref|ZP_08455743.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] gi|332747531|gb|EGJ77972.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] Length = 215 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 11/117 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-----------HGACYQVITDFLELFKKRSSAAR 172 L +G+++ S + L V A ++ + + R Sbjct: 95 LAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRIIEGHLSGRRRPSDQDLARLR 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L+L DG ++ EIA++L +S+HTV ++ K +R QA A Sbjct: 155 DLTEREVDVLRLIRDGLSNAEIADRLVVSLHTVKTHVSRVLTKTGCQSRAQAAVLAR 211 >gi|332879917|ref|ZP_08447602.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682128|gb|EGJ55040.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 218 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 34/60 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LT RE LA +G S+EI+EKL +S+HTVN + + KL N I+AI Sbjct: 158 ESATDALLTPREREIFALAKEGMFSKEISEKLNISIHTVNRHRQNILEKLQVDNIIEAIR 217 >gi|330966354|gb|EGH66614.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 207 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +A LT R+ L L G T++EIA++LG+S TV ++ S L R Sbjct: 136 FNESAVNALSPLTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRS 195 Query: 223 QAIA----KAIR 230 A A AIR Sbjct: 196 AAAAQFSSLAIR 207 >gi|323497473|ref|ZP_08102491.1| transcriptional regulator, LuxR family protein [Vibrio sinaloensis DSM 21326] gi|323317556|gb|EGA70549.1| transcriptional regulator, LuxR family protein [Vibrio sinaloensis DSM 21326] Length = 223 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + ++++D LT+RE L+ Sbjct: 112 QDAPIEHLLRSLEAVEQGDLWLPRKLMVKMLSDIRPYALTYQDINTTLTKREQQTLERLV 171 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ EIAE L ++ TV ++ KL+ R +AI K Sbjct: 172 QGQSNLEIAEALFVAESTVKTHVYKLFKKLNVRCRKEAIHK 212 >gi|320106448|ref|YP_004182038.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924969|gb|ADV82044.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 224 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ T L + I HG V T+ R ++ L+ RE L+ Sbjct: 116 AGAVGYLLKTMLRKEL-AQAIRAVHGGLRYVPTEIAS-ELTRHFSSEALSARELEVLRSV 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++ +A+KL +S TV ++ + KL A +R+ A+ A+R G + Sbjct: 174 SRGWSNKIVADKLAISEDTVKGHMRTILAKLGANDRLDAVMTALRRGIL 222 >gi|307727953|ref|YP_003911166.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307588478|gb|ADN61875.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 494 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R++ L+ RE L++ G +++E A +L +S TV ++ S KLD R Sbjct: 422 RRSATRATQGARLSAREMDVLRMISRGASNKEAARELAMSPSTVRTHVESMFRKLDCSTR 481 Query: 222 IQAIAKAIRFGYI 234 A KA G + Sbjct: 482 AAATLKASALGLL 494 >gi|261252640|ref|ZP_05945213.1| BarA-associated response regulator UvrY [Vibrio orientalis CIP 102891] gi|260936031|gb|EEX92020.1| BarA-associated response regulator UvrY [Vibrio orientalis CIP 102891] Length = 188 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 107 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 166 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G I Sbjct: 167 ISGDVELTHLAIRHGMI 183 >gi|258622635|ref|ZP_05717656.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573] gi|258585091|gb|EEW09819.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573] Length = 227 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 146 MALSQFSPASENPFADLSERELQIMLMITKGQKVTEISEQLSLSPKTVNSYRYRLFAKLN 205 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 206 INGDVELTHLAIRHGIL 222 >gi|238756486|ref|ZP_04617792.1| Response regulator uvrY [Yersinia ruckeri ATCC 29473] gi|238705302|gb|EEP97713.1| Response regulator uvrY [Yersinia ruckeri ATCC 29473] Length = 206 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 121 MALSQLEPQVDTPFACLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 180 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 181 ISGDVELTHLAIRHGL 196 >gi|256827745|ref|YP_003151704.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583888|gb|ACU95022.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 472 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 3/99 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G+ + + + K S LT RE L G G Sbjct: 367 FGWESWQRITQEARPNDADNNQASSASFSRGLPRIPKSLS---DKLTNRENEILVFLGRG 423 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 Y+ IAEKL +S TV ++ KL +R A Sbjct: 424 YSISYIAEKLFISESTVRTHVKHIYAKLGIHSREDLFAL 462 >gi|226362430|ref|YP_002780208.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240915|dbj|BAH51263.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 937 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 6/176 (3%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 + + L D + + W + + S+ + G + Sbjct: 759 SELLEQGLRLARLADDPV--GCANCVEVYAWIAGPNDPRRASTLMGAAEALGRAAGSPSV 816 Query: 119 AFP----VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 P ++ + T+ + + K S + +L Sbjct: 817 YIPDLLIYHQECERSARRMLTAHAFEESRQHGRAMDIDSAMAYALGERPHKPPSPGSHHL 876 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T+RE +L +G T++ IA +L +S T ++ KL +R Q A + Sbjct: 877 TKREQQVAELIAEGLTNKAIAARLVISQRTAQGHVEHILTKLGFTSRAQVAAWVVE 932 >gi|223940108|ref|ZP_03631971.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891210|gb|EEF57708.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 219 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L RE L+L G ++IA ++ LS+ T+ Y+ KL R A+ K Sbjct: 146 PLIEKLAPREQQVLELLSKGRAYKQIAAEMNLSMGTIRTYIRRIYEKLHVNCRTDAVVK 204 >gi|146297938|ref|YP_001192529.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] gi|146152356|gb|ABQ03210.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] Length = 256 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+LA G S +IA L +SV+TV + + K+ N +A+ A+ G Sbjct: 194 LSKRELEILKLAAKGNNSGQIAGFLNISVYTVRRHRQNIIQKMQVSNTTEALRTALVMGL 253 Query: 234 I 234 I Sbjct: 254 I 254 >gi|75675221|ref|YP_317642.1| response regulator FixJ [Nitrobacter winogradskyi Nb-255] gi|74420091|gb|ABA04290.1| two component transcriptional regulator, LuxR family [Nitrobacter winogradskyi Nb-255] Length = 205 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + S L++RE + G +++ IA + +S T+ Y + K+ A N Sbjct: 131 SISAEIVSRIATLSQRERQVMDGLVAGLSNKLIAREHNISPRTIEVYRANVMTKMQAHNL 190 Query: 222 IQAIAKAIRFGYI 234 + I A+R G + Sbjct: 191 SELIRLALRAGIL 203 >gi|160875718|ref|YP_001555034.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160861240|gb|ABX49774.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315267907|gb|ADT94760.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 220 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205 Query: 225 IA 226 + Sbjct: 206 VI 207 >gi|94497083|ref|ZP_01303656.1| two component transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|307296677|ref|ZP_07576496.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|94423455|gb|EAT08483.1| two component transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|306877806|gb|EFN09031.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 207 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGL 200 GA + ++ + + LT RE L+ +G ++ IA LG Sbjct: 110 AALLGAVSRAFARLDDVDFRTLETSEAGVRVAALTPREREVLEGLANGLPNKTIAYDLGC 169 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 S TV + S KL+ N +A+ A G Sbjct: 170 SSRTVEVHRASLMAKLEVRNLSEALRIAFAAGM 202 >gi|16760893|ref|NP_456510.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765285|ref|NP_460900.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141415|ref|NP_804757.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62180520|ref|YP_216937.1| response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613492|ref|YP_001587457.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552826|ref|ZP_02346577.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993515|ref|ZP_02574609.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234117|ref|ZP_02659175.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239182|ref|ZP_02664240.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244793|ref|ZP_02669725.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259770|ref|ZP_02681743.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462515|ref|ZP_02696446.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822986|ref|ZP_02834986.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194451039|ref|YP_002045998.1| response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470909|ref|ZP_03076893.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194733956|ref|YP_002114980.1| response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247624|ref|YP_002146076.1| response regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265053|ref|ZP_03165127.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242641|ref|YP_002215139.1| response regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389754|ref|ZP_03216365.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930976|ref|ZP_03221802.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352357|ref|YP_002226158.1| response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856538|ref|YP_002243189.1| response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213053516|ref|ZP_03346394.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213421440|ref|ZP_03354506.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426359|ref|ZP_03359109.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580418|ref|ZP_03362244.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650333|ref|ZP_03380386.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857577|ref|ZP_03384548.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912480|ref|ZP_04656317.1| response regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824069|ref|ZP_06543667.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298759|pir||AE0749 invasion response-regulator sirA [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|1815641|gb|AAC44801.1| SirA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|2992526|gb|AAC08300.1| SirA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420481|gb|AAL20859.1| putative LuxR/UhpA family response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503190|emb|CAD05696.1| invasion response-regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29137042|gb|AAO68606.1| invasion response-regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128153|gb|AAX65856.1| putative response regulator (LuxR/UhpA familiy) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362856|gb|ABX66624.1| hypothetical protein SPAB_01209 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409343|gb|ACF69562.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457273|gb|EDX46112.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709458|gb|ACF88679.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634097|gb|EDX52449.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211327|gb|ACH48724.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243308|gb|EDY25928.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288050|gb|EDY27437.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937157|gb|ACH74490.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602199|gb|EDZ00745.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320020|gb|EDZ05225.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272138|emb|CAR36991.1| invasion response-regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322666|gb|EDZ10505.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328417|gb|EDZ15181.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331883|gb|EDZ18647.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336342|gb|EDZ23106.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340682|gb|EDZ27446.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350674|gb|EDZ37305.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708341|emb|CAR32644.1| invasion response-regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247112|emb|CBG24935.1| invasion response-regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993933|gb|ACY88818.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158462|emb|CBW17972.1| invasion response-regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912937|dbj|BAJ36911.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085435|emb|CBY95216.1| Response regulator gacA Global activator [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224589|gb|EFX49652.1| BarA-associated response regulator UvrY [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616941|gb|EFY13849.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618181|gb|EFY15073.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625851|gb|EFY22670.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626303|gb|EFY23113.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632718|gb|EFY29463.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639060|gb|EFY35753.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640501|gb|EFY37154.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645990|gb|EFY42507.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649889|gb|EFY46310.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655497|gb|EFY51805.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660275|gb|EFY56513.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662956|gb|EFY59163.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668141|gb|EFY64300.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674099|gb|EFY70193.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675548|gb|EFY71622.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683040|gb|EFY79056.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686734|gb|EFY82712.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714996|gb|EFZ06567.1| response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130226|gb|ADX17656.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195377|gb|EFZ80557.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199268|gb|EFZ84363.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204433|gb|EFZ89439.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207523|gb|EFZ92471.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211848|gb|EFZ96679.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217508|gb|EGA02227.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219584|gb|EGA04068.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223586|gb|EGA07901.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231530|gb|EGA15643.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235973|gb|EGA20052.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240543|gb|EGA24586.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245435|gb|EGA29435.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250205|gb|EGA34097.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253984|gb|EGA37808.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255489|gb|EGA39250.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262086|gb|EGA45649.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266209|gb|EGA49699.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270682|gb|EGA54123.1| response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622888|gb|EGE29233.1| response regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627408|gb|EGE33751.1| response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988836|gb|AEF07819.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 218 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 129 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209 >gi|67640400|ref|ZP_00439208.1| DNA-binding response regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|134281909|ref|ZP_01768616.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 305] gi|167900009|ref|ZP_02487410.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|226199200|ref|ZP_03794760.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|251768095|ref|ZP_02269470.2| DNA-binding response regulator, LuxR family [Burkholderia mallei PRL-20] gi|134246971|gb|EBA47058.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 305] gi|225928607|gb|EEH24634.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|238521110|gb|EEP84564.1| DNA-binding response regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|243060824|gb|EES43010.1| DNA-binding response regulator, LuxR family [Burkholderia mallei PRL-20] Length = 202 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 86 VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 145 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 146 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 199 >gi|220910204|ref|YP_002485515.1| GAF modulated LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866815|gb|ACL47154.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 237 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 70/233 (30%), Gaps = 38/233 (16%) Query: 10 KSSSLQELSP-RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ LQEL L + A + L+ + D + L L Sbjct: 13 QAQDLQELRSQVLPRLGEYFVATRWGLFFFDQLPDSRFQPLLNLALS------------- 59 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + L + P+ E V+ + +A P+ Sbjct: 60 --LEHNPVLRYLVERHAPVH-----EGLVVSPQAWQLLCPRTDH--RHVMAGPLVKHGKL 110 Query: 129 NGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAA-------------RN 173 G + FT + + + + G C + T S + Sbjct: 111 VGGLGFTRSHTLAAFDRDNLADLSGLCLHLSTWIATGRSIPPSPLAANPPQAWANRRPQR 170 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RET QL G T+ I +L ++ ++V L KL NR + IA Sbjct: 171 LTRRETQIAQLVAMGKTNAAIGAELWITENSVKQALKRMFQKLQVSNRAEMIA 223 >gi|213614409|ref|ZP_03371235.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 88 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 32/54 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT +E + + +G +++ IA +L +S+ TV +L + K + +NR + +++ Sbjct: 23 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 76 >gi|37223208|gb|AAQ90200.1| LuxR [Aliivibrio fischeri] Length = 192 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 11/176 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +++ L + + + Y + + I L NY + Sbjct: 22 RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + + NS PI W I E + ++ G +FP+ + G Sbjct: 79 KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137 Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSC 181 + F + + H ++ ++ ++ + + +LT+RE C Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKEC 192 >gi|229495080|ref|ZP_04388826.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|3319301|gb|AAC26219.1| CprR [Rhodococcus sp. NO1-1] gi|229318011|gb|EEN83886.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 212 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + + + + L+++E + L G+G T+ EI +L L+ TV Y Sbjct: 126 LDSRATEALMQRIR-SDRTADPLAELSDQERAVFDLIGEGLTNREIGARLFLAEKTVKNY 184 Query: 209 LGSATVKLDAVNRIQAIAKAIR 230 + KL R QA A Sbjct: 185 VTRLLSKLGMQRRTQAAVLATE 206 >gi|330502238|ref|YP_004379107.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328916524|gb|AEB57355.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 216 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S TV A++ + KL R Q Sbjct: 143 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATVKAHVTAIFRKLGVRTRTQ 202 Query: 224 AIAK 227 A Sbjct: 203 AALL 206 >gi|330822044|ref|YP_004350906.1| DNA-binding response regulator, LuxR family protein [Burkholderia gladioli BSR3] gi|327374039|gb|AEA65394.1| DNA-binding response regulator, LuxR family protein [Burkholderia gladioli BSR3] Length = 215 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 42/114 (36%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ ++ + + + + LT R Sbjct: 99 VTQAVRAGASGYLLKDSPASDIVRGIGAVLAGQTFFSEGLAARMIQASAGAGPVERLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA + GLSV TV + + KL + + I A+ Sbjct: 159 ELDILDALAEGLSSKQIALQNGLSVRTVETHRLNLKRKLGIEGQAELIKFAVEH 212 >gi|325961975|ref|YP_004239881.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323468062|gb|ADX71747.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 208 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 9/151 (5%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 P + + ++ A + F + Sbjct: 43 RLVQEHGPAVVVMDLAMGPGMDGIEAIRKIRERNPRQAILVFTTYDSDADIVRAVDAGAM 102 Query: 139 L----MLANEVIIEAHGACYQ---VITD--FLELFKKRSSAARNLTERETSCLQLAGDGY 189 A E I A Q V++ LF++ + LT RE L L G Sbjct: 103 GYLLKDAAPEEIFAAIRGAVQGKSVMSPPVASRLFQQLRNPEEVLTPREAELLSLLTQGL 162 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ E+ ++L +S TV +L KL Sbjct: 163 SNRELGQRLFISEATVKTHLAHIYAKLGVDT 193 >gi|294665170|ref|ZP_06730471.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605083|gb|EFF48433.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 236 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 15/146 (10%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156 L+ RL I + V LA Q Sbjct: 65 DLTRRLMQRSPNSRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 124 Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L +R++ A LT RE +QL +G ++ +IA +L LSV TV Sbjct: 125 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 184 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 + + +KL+ + Q AI G Sbjct: 185 HRENCMLKLNIQSIAQLTRYAIAQGL 210 >gi|260770566|ref|ZP_05879499.1| nitrate/nitrite response regulator protein [Vibrio furnissii CIP 102972] gi|260615904|gb|EEX41090.1| nitrate/nitrite response regulator protein [Vibrio furnissii CIP 102972] Length = 67 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L GY +++IA++L +S TV ++ S KL +R A + Sbjct: 3 DLLTDREAQILGEVAKGYRNKQIADRLFISESTVKVHMKSLLKKLRVPSRTAATVLFLER 62 >gi|117617775|ref|YP_855754.1| positive regulator AgmR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559182|gb|ABK36130.1| positive regulator AgmR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 214 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S +LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 146 ASKLASLTPQQYKVLVMLRDGSLNKQIAWELNVSEATIKAHITAIFRKLGVKNRTQAV-I 204 Query: 228 AIRF 231 A++ Sbjct: 205 ALQQ 208 >gi|56413138|ref|YP_150213.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362064|ref|YP_002141701.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127395|gb|AAV76901.1| invasion response-regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093541|emb|CAR59003.1| invasion response-regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 218 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 129 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209 >gi|298251534|ref|ZP_06975337.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546126|gb|EFH79994.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 64/182 (35%), Gaps = 16/182 (8%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 DI + GD + + P + E + S L L + Sbjct: 26 DIEVVAEVARGDTVVEAALTS-RP-DVALLDIEMPGGGGLEASHALRTALPSCRAVILTT 83 Query: 123 RLGFH---------KNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAAR 172 G+++ + LA+ + HG L L + + Sbjct: 84 FGRSGYLRRAMESGAVGFLLKDAPASELASALRRVMHGERVVDPELALLALSEGNNP--- 140 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L A G + EIA +L LS TV +L +A KL A NR++A A + G Sbjct: 141 -LTHREREVLVAALPGLSHAEIATRLALSEGTVRNHLSAAMQKLGAHNRMEAARLAEQKG 199 Query: 233 YI 234 ++ Sbjct: 200 WL 201 >gi|291442180|ref|ZP_06581570.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345075|gb|EFE72031.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + L +++ S A+ LT RE ++L +G Sbjct: 127 QAVLAAARGDGDLPADLLGRLIRQMGT--KSPNAAVGNSSYPAQRLTPREVDVMRLVAEG 184 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + +IA KL S T+ + T +L+ NR A+A A+R GYI Sbjct: 185 FGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGYI 230 >gi|260201610|ref|ZP_05769101.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T46] Length = 293 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 205 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 264 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 265 YTKLGLSSRLQLAQQAARRG 284 >gi|238062966|ref|ZP_04607675.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884777|gb|EEP73605.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 279 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNGYVIFTSEFLMLA 142 + E + + ++ I + Y++ T L Sbjct: 112 LDVEMPGPGAAAVIRQVRRTASETRVIVLTMHDDPDMVHELLEAGAVAYLLKTILRDDLV 171 Query: 143 NEVIIEAHGACYQVI-----TDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAE 196 V V+ L +++ LT RE L+L + ++ +IA Sbjct: 172 AAVRSVVRRPTQSVLLAVSRETVERLDRQKPRTNGTPLTSRELEVLRLTAEAMSNAQIAS 231 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L ++ TV +L + KL AV+R+ AI KA I Sbjct: 232 RLFITEATVKRHLTNIYAKLQAVSRVDAIRKATAARLI 269 >gi|228991572|ref|ZP_04151516.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768141|gb|EEM16760.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 201 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++A +G T+ EI + L L+ TV YL S+ KL+A +R QAI A G Sbjct: 140 PLTAREMEILRMAKNGMTTREIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|56413638|ref|YP_150713.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179982|ref|YP_216399.1| secretion system transcriptonal activator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168233585|ref|ZP_02658643.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168822260|ref|ZP_02834260.1| EsrB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469524|ref|ZP_03075508.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248947|ref|YP_002146649.1| EsrB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362562|ref|YP_002142199.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224584098|ref|YP_002637896.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|56127895|gb|AAV77401.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127615|gb|AAX65318.1| Secretion system regulator: transcriptonal activator, homologous with degU/uvrY/bvgA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194455888|gb|EDX44727.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197094039|emb|CAR59535.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212650|gb|ACH50047.1| EsrB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205332349|gb|EDZ19113.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341360|gb|EDZ28124.1| EsrB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224468625|gb|ACN46455.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320086128|emb|CBY95902.1| Oxygen regulatory protein nreC Nitrogen regulation protein C [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322714449|gb|EFZ06020.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 212 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +GYT+ I+EKL +S+ TV + + KL + + A R Sbjct: 150 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|308186093|ref|YP_003930224.1| Fimbriae Z protein [Pantoea vagans C9-1] gi|308056603|gb|ADO08775.1| Fimbriae Z protein [Pantoea vagans C9-1] Length = 193 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 ++ + + A V+ + LT++E L L G ++ +IA +L +S Sbjct: 104 SQRMTQLLSAILAVLGGQTAFPEMDDEPELPLTQKERQILALLASGLSNLQIAAQLHISN 163 Query: 203 HTVNAYLGSATVKLDAVNRIQAI 225 TV+ + + K A + ++ Sbjct: 164 KTVSTHKKNIMEKTGARSVVELA 186 >gi|288962862|ref|YP_003453156.1| two-component response regulator [Azospirillum sp. B510] gi|288915128|dbj|BAI76612.1| two-component response regulator [Azospirillum sp. B510] Length = 227 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT R+ L L G +++EI E+LGL++ TV ++ L +R QA+ Sbjct: 162 DGLTRRQLEVLDLLAQGLSNQEIGERLGLNLSTVKTHVTGVLKALGVGSRTQAVLLVKES 221 Query: 232 G 232 G Sbjct: 222 G 222 >gi|288870280|ref|ZP_06409695.1| DNA-binding response regulator VraR [Clostridium hathewayi DSM 13479] gi|288867767|gb|EFD00066.1| DNA-binding response regulator VraR [Clostridium hathewayi DSM 13479] Length = 183 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVI 157 G+ ++ L + P ++ + ++EA Sbjct: 54 PRGEEILKEALALAEKDHLIMPFAENTGHVRLMLEALLKREESPYIREVLEACRR----Y 109 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + L+LF + +LT+RE L+L +GYT EEIA ++ +S+ TV ++ + KLD Sbjct: 110 SSQLKLFH---ACEVSLTDRELEILKLLDEGYTHEEIAGEIYISIATVRYHVKNIYQKLD 166 Query: 218 AVNRIQAIAKAIRFGYI 234 N+I A+ KA +I Sbjct: 167 VNNKILALRKAKDLNFI 183 >gi|56475502|ref|YP_157091.1| two-component response regulator [Aromatoleum aromaticum EbN1] gi|56311545|emb|CAI06190.1| Two-component response regulator [Aromatoleum aromaticum EbN1] Length = 211 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +IE A Q L + + +LT+RE L L G +++IA+ LG+S+ TV Sbjct: 120 LIEGCLAAEQESRGKRRLEAETTRRLGSLTQREREVLDLIIAGKLNKQIADVLGISIKTV 179 Query: 206 NAYLGSATVKLDAVNRIQAIA 226 + K+ A + + + Sbjct: 180 EVHRARVMEKMGAHSLAKLVR 200 >gi|27380416|ref|NP_771945.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27353580|dbj|BAC50570.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 121 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAKAIR 230 T RE + L G ++ IA +L +S +TV A++G+ K NR Q AI A++ Sbjct: 28 TPRERELMMLIARGMQNKNIAYELKISENTVRAHIGNIMRKYRLQNRTQIAIIYALK 84 >gi|16760520|ref|NP_456137.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764741|ref|NP_460356.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141720|ref|NP_805062.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161614193|ref|YP_001588158.1| hypothetical protein SPAB_01935 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167995024|ref|ZP_02576114.1| EsrB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168239275|ref|ZP_02664333.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240903|ref|ZP_02665835.1| EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263778|ref|ZP_02685751.1| EsrB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463199|ref|ZP_02697130.1| EsrB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194448851|ref|YP_002045396.1| two-component response regulator EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194737568|ref|YP_002114406.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197261742|ref|ZP_03161816.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243723|ref|YP_002215738.1| hypothetical protein SeD_A1950 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390296|ref|ZP_03216907.1| EsrB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927430|ref|ZP_03218631.1| EsrB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352893|ref|YP_002226694.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857103|ref|YP_002243754.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051567|ref|ZP_03344445.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428553|ref|ZP_03361303.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213610045|ref|ZP_03369871.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647230|ref|ZP_03377283.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854965|ref|ZP_03383205.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913204|ref|ZP_04657041.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289804327|ref|ZP_06534956.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289826048|ref|ZP_06545196.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298758|pir||AE0700 probable two-component response regulator ssrB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419912|gb|AAL20315.1| secretion system regulator: transcriptonal activator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502816|emb|CAD01974.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29137348|gb|AAO68911.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161363557|gb|ABX67325.1| hypothetical protein SPAB_01935 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407155|gb|ACF67374.1| EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194713070|gb|ACF92291.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634250|gb|EDX52602.1| EsrB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197239997|gb|EDY22617.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287974|gb|EDY27361.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938239|gb|ACH75572.1| EsrB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602741|gb|EDZ01287.1| EsrB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322772|gb|EDZ07968.1| EsrB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272674|emb|CAR37584.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205327217|gb|EDZ13981.1| EsrB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339126|gb|EDZ25890.1| EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347546|gb|EDZ34177.1| EsrB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708906|emb|CAR33236.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246597|emb|CBG24407.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993279|gb|ACY88164.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157926|emb|CBW17421.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|309243421|gb|ADO51997.1| SsrB [Salmonella enterica subsp. enterica serovar Gallinarum] gi|312912376|dbj|BAJ36350.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224017|gb|EFX49080.1| Secretion system regulator of DegU/UvrY/BvgA type [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615123|gb|EFY12046.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619966|gb|EFY16839.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622277|gb|EFY19122.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627800|gb|EFY24590.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632856|gb|EFY29600.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636653|gb|EFY33356.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641154|gb|EFY37796.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644910|gb|EFY41443.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650252|gb|EFY46666.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655826|gb|EFY52128.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660152|gb|EFY56391.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665282|gb|EFY61470.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669539|gb|EFY65687.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673465|gb|EFY69567.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677393|gb|EFY73457.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679944|gb|EFY75983.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687416|gb|EFY83388.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323129663|gb|ADX17093.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192369|gb|EFZ77600.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198612|gb|EFZ83713.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202301|gb|EFZ87347.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208658|gb|EFZ93596.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213827|gb|EFZ98605.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217635|gb|EGA02350.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218983|gb|EGA03493.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223662|gb|EGA07972.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229437|gb|EGA13560.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232660|gb|EGA16756.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240302|gb|EGA24346.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242710|gb|EGA26731.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245921|gb|EGA29909.1| two component system sensor kinase SsrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252485|gb|EGA36332.1| two component system sensor kinase SsrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255186|gb|EGA38965.1| two component system sensor kinase SsrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260067|gb|EGA43692.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267169|gb|EGA50654.1| two component system sensor kinase SsrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271508|gb|EGA54929.1| two component system sensor kinase SsrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623486|gb|EGE29831.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627965|gb|EGE34308.1| putative two-component response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988278|gb|AEF07261.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 212 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +GYT+ I+EKL +S+ TV + + KL + + A R Sbjct: 150 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|312884543|ref|ZP_07744247.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309367855|gb|EFP95403.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 214 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFSSASENPFAELSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G I Sbjct: 193 ISGDVELTHLAIRHGMI 209 >gi|300789062|ref|YP_003769353.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798576|gb|ADJ48951.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + + LT RE ++ G + EIA + +S TV + A Sbjct: 138 HVARDAGSRPEPEIARLFETLTPRELEIVEAVVSGLDNAEIAALMSVSPFTVKTHANRAM 197 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 K+ A +R Q + A R G Sbjct: 198 TKVGARDRAQLVTLAFRAGI 217 >gi|213024965|ref|ZP_03339412.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 105 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 16 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 74 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 75 MFSKLNIHGDVELTHLAIRHGL 96 >gi|223940662|ref|ZP_03632503.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223890674|gb|EEF57194.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 241 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L++RE ++L G + +EIA L LSV T++ Y K+ I A Sbjct: 175 APHEILSDREYQVMRLIALGKSVKEIAFDLSLSVKTISTYRTRIMEKMKFKTNADIIRYA 234 Query: 229 IRFGYI 234 + + Sbjct: 235 VHERLV 240 >gi|171320406|ref|ZP_02909442.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171094356|gb|EDT39427.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 214 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 158 ERDILGALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211 >gi|115525513|ref|YP_782424.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519460|gb|ABJ07444.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 268 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS L+ RE + L G ++++IA + ++ TV ++ S K+ NR QA Sbjct: 192 RSPEFPLLSGREEAILDGLVRGLSNKQIARECSITEATVKVHMKSILRKIRVSNRTQAAI 251 Query: 227 KAIRF 231 A+ Sbjct: 252 WALDR 256 >gi|289762657|ref|ZP_06522035.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|289710163|gb|EFD74179.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] Length = 885 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 797 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 856 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 857 YTKLGLSSRLQLAQQAARRG 876 >gi|156933491|ref|YP_001437407.1| response regulator [Cronobacter sakazakii ATCC BAA-894] gi|260598408|ref|YP_003210979.1| response regulator [Cronobacter turicensis z3032] gi|156531745|gb|ABU76571.1| hypothetical protein ESA_01309 [Cronobacter sakazakii ATCC BAA-894] gi|260217585|emb|CBA31835.1| Response regulator uvrY [Cronobacter turicensis z3032] Length = 218 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A Q+ +E + S A +L+ERE + + G EI+E+L Sbjct: 116 RSVHAGRRYIASDIAQQMALSQIEPDRSESPFA-SLSERELQIMLMITKGQKVNEISEQL 174 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS TVN+Y KL+ ++ AIR G Sbjct: 175 NLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209 >gi|326330414|ref|ZP_08196722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951689|gb|EGD43721.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 382 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 32/56 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE+ LQL G + IAE+L ++ TV +++ KL NR QAIA+A Sbjct: 321 ELTARESEVLQLMVAGAPNRVIAERLVIAEDTVKSHVKQILRKLGVANRAQAIARA 376 >gi|296160728|ref|ZP_06843542.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295889031|gb|EFG68835.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 251 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A A + I L + NL+ R+ ++L G+T++ IA +LG++ TV + Sbjct: 162 AGAALTEPIAQIQALQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARELGVAEGTVKVH 221 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L L NR AI A+ G++ Sbjct: 222 LSVIFRALGVHNRSTAI--AVINGWL 245 >gi|317129068|ref|YP_004095350.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474016|gb|ADU30619.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 231 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 38/60 (63%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T++E LQL DG + EIA+KL + TV+ + S K++A +R +A+ KAIR G++ Sbjct: 168 TKKEQEILQLILDGCNNGEIADKLFYANSTVSTNISSILKKMEANDRTEAMVKAIRNGWV 227 >gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 292 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + + LT RE L G T++EI E L +S TVN +L K Sbjct: 214 IQRHAAQAEPEALARIFQLTAREAESLYWVALGKTNKEIGEILQISPRTVNKHLEHVFEK 273 Query: 216 LDAVNRIQAIAK 227 L R A A Sbjct: 274 LGVETRTAAAAL 285 >gi|220912826|ref|YP_002488135.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219859704|gb|ACL40046.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 62/223 (27%), Gaps = 29/223 (13%) Query: 14 LQELSPRLHLIQNRIKARNFALY-----TINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 L + +++ ++ F + + P + I L D I Sbjct: 23 LDDHELVRQGLKDLLEGEGFVVVGESGSAAEATRRIPALRPDISILDGRLPDGTGIEVCR 82 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + + ++R I ++ Sbjct: 83 DVRSLDP---------------RLNCLILTSYDDEQAIRGAVLAGAAGYILKQIKSDD-- 125 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + E G ++++ L+ +E L L G G Sbjct: 126 ----LLAGIRKAATGASLFEP-GVRERIVSGLTRTPTD--PRMEGLSAQEKKVLALVGQG 178 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+ +I ++L L+ TV Y+ S KL R QA R Sbjct: 179 LTNRQIGDELFLAEKTVKNYVSSILAKLGFERRTQAAVFVTRN 221 >gi|107100830|ref|ZP_01364748.1| hypothetical protein PaerPA_01001859 [Pseudomonas aeruginosa PACS2] Length = 210 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146 + + ++ L I + G V+ +A E + Sbjct: 55 LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114 Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V+ + L + S LTER+ L+L G +++EI L +S Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 +TV ++ S LD +R A K Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199 >gi|66044632|ref|YP_234473.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|302187186|ref|ZP_07263859.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae 642] gi|63255339|gb|AAY36435.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|330945540|gb|EGH47068.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi str. 1704B] gi|330968918|gb|EGH68984.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 215 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201 Query: 224 AIAKAIRF 231 A + Sbjct: 202 AALLLQQL 209 >gi|330830693|ref|YP_004393645.1| two-component system response regulator, LuxR family [Aeromonas veronii B565] gi|328805829|gb|AEB51028.1| Two-component system response regulator, LuxR family [Aeromonas veronii B565] Length = 214 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S +LT ++ L + DG +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 146 ASKLASLTPQQYKVLIMLRDGSLNKQIAWELNVSEATIKAHITAIFRKLGVKNRTQAV-I 204 Query: 228 AIRF 231 A++ Sbjct: 205 ALQQ 208 >gi|326774956|ref|ZP_08234221.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326655289|gb|EGE40135.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 1012 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 2/133 (1%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 + + L+VRL G A V G + Sbjct: 863 RADLREAHALAVRLLVPGGRTEGHARQVHGAGAQHRQASADQGGGGHESRAGAGRLVRLT 922 Query: 154 YQVITD-FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + + + +SA L+ E ++LA G T+ +I + L L+ TV +L A Sbjct: 923 EKALRAGAARVTRPAASAGEALSPAERRIVRLAAQGQTNAQIGDALHLARRTVETHLTHA 982 Query: 213 TVKLDAVNRIQAI 225 KL R Q + Sbjct: 983 YRKLGVSRRTQLV 995 >gi|162452375|ref|YP_001614742.1| LuxR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161162957|emb|CAN94262.1| transcriptional regulator, LuxR family [Sorangium cellulosum 'So ce 56'] Length = 270 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 68/223 (30%), Gaps = 24/223 (10%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 + +P R+ + EL + L D + + + P +W Sbjct: 52 EFLTFHDELVRRFYPDRKDALFELGAESARWALVDGPLKRFVRDPGISSLVTAI-PTLWH 110 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 ET S L + F P + ++ + +T E L L I H Sbjct: 111 RYFSETDSRSEAA----LRDAGVEFRVHDLPAWHPYFEHFVIGYTKEMLELYCANPIWTH 166 Query: 151 GACY---QVITDFLELFKKRSSAA----------------RNLTERETSCLQLAGDGYTS 191 L S+ R LT RE L+L G G T+ Sbjct: 167 RLAGGRGTTYNYLLATDPVPSAPPSGERGSGGCAGPVRSRRALTARELEVLRLVGVGKTN 226 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L +S TV ++ A KL +R A G + Sbjct: 227 REIAVVLHISQKTVQHHIAHAYDKLGIYSRAGATLWLGERGLL 269 >gi|71908813|ref|YP_286400.1| LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71848434|gb|AAZ47930.1| transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 205 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +++ G + + E R A L+ERE +L G ++ E+AE+L ++ Sbjct: 116 QSLLLRLVGGASRALATKSE-RPPRVDWAMLLSEREVQVARLVAGGASNREVAEQLSITE 174 Query: 203 HTVNAYLGSATVKLDAVNRIQA 224 TV A++ + KL +R+Q Sbjct: 175 RTVKAHMSAIFEKLGLRDRLQL 196 >gi|70730577|ref|YP_260318.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344876|gb|AAY92482.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 260 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 24/226 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 + L+ N ++ E + + D F Sbjct: 23 LILLLHQATPFDNALAIFYPLDGPPRALEEYDAEPSSKPASMLTY--LNGLYLLDPFFQA 80 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 G +++ + + + + + ++L + Sbjct: 81 CREGYPSGLYRLEEVAPDHFRQSEYFLSYFHDNVLEDEVQLILQLPEAGTLSLSL-GSQC 139 Query: 140 MLANEV-------------IIEAHGACYQVITDFLELFKKRSSAARNLT--------ERE 178 + +++ ++E H Q + S L+ ERE Sbjct: 140 VFSHDEIGLLTTFSAWVLPLMEQHWQHSQARPQSPAPQEMASQIRDALSHFGSAVLSERE 199 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L G++S+ +AE+L +S T+ + KLD ++ + Sbjct: 200 LEIARLILRGFSSKAMAERLKISPDTIKVHRRHLYAKLDISSQPEL 245 >gi|333027004|ref|ZP_08455068.1| putative LuxR family two-component response regulator [Streptomyces sp. Tu6071] gi|332746856|gb|EGJ77297.1| putative LuxR family two-component response regulator [Streptomyces sp. Tu6071] Length = 264 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%) Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +V+ E ++ + + L+ RE L L G G T+ +IAE+L L+ Sbjct: 167 RMTSRVMARIREPEPEKPAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEK 226 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TV + S KL RIQA A R Sbjct: 227 TVKNRVSSILGKLGVGRRIQAAMIAERL 254 >gi|299140030|ref|ZP_07033200.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298598030|gb|EFI54198.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 209 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RET L++ G +++ +A++L +S TV ++ S KL A +R A+ A++ Sbjct: 144 ADALSARETEVLRVVASGCSNKIVADRLAISEETVKGHIKSVLAKLCANDRTHAVMIAMK 203 Query: 231 FGYI 234 G++ Sbjct: 204 RGFL 207 >gi|295697043|ref|YP_003590281.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295412645|gb|ADG07137.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 320 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + F ++ +R A T RE L L + + +IA+ L +S TV A++ Sbjct: 219 EAGRIFAQIIARRQEALELFTPREFEVLCLLSENKSYRQIAQHLQISEGTVRAHVAGMMR 278 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 K +R + A + I Sbjct: 279 KTQVHSREELTVWARKHCLI 298 >gi|291614955|ref|YP_003525112.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291585067|gb|ADE12725.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 216 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181 G H ++ L + + + + LT RET+ Sbjct: 100 GAHGYVLKGVSASELRSITRRVAGGEAYVTPALAADMLTEFSNPHPIDSFSELTARETTI 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L G T+ EI E+ L+ TV Y+ S KL +R +A A++ Sbjct: 160 LELLSQGLTNREIGERTYLAEKTVKHYMTSILQKLHVRSRTEAALIAMQR 209 >gi|229168156|ref|ZP_04295884.1| Response regulator receiver [Bacillus cereus AH621] gi|228615400|gb|EEK72497.1| Response regulator receiver [Bacillus cereus AH621] Length = 596 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G + IA KL LS TV Y + KL+ NR +A+ KA G Sbjct: 534 GLTKRELEVLNLLSQGIRYKTIASKLYLSNGTVRNYASTLYDKLEVKNREEAVKKARDTG 593 Query: 233 YI 234 + Sbjct: 594 LL 595 >gi|254424904|ref|ZP_05038622.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] gi|196192393|gb|EDX87357.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] Length = 216 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%) Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G + +A+ L +S TV ++ KL +R QA+ A++ G I Sbjct: 159 VLNLLAFGSGNASLAKALHISEGTVKFHVNHIFQKLGVHDRTQAVIVALKRGLI 212 >gi|194446212|ref|YP_002041213.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404875|gb|ACF65097.1| response regulator UvrY [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 218 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E K + A +L+ERE + + G EI+E+L LS TVN+Y Sbjct: 129 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL+ ++ AIR G Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209 >gi|319795753|ref|YP_004157393.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598216|gb|ADU39282.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 202 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + A LT R+ L L G +++IA +L ++ TV ++ + +DA NR Sbjct: 127 LQPRAGLVASGLTPRQLEVLLLVAQGRQNKQIAAELQIAERTVKLHITALLDAMDARNRT 186 Query: 223 QAIAKAIRFGY 233 + +A R G Sbjct: 187 HLLVQARRAGL 197 >gi|282863904|ref|ZP_06272961.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560982|gb|EFB66527.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 231 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 36/68 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + R+LTERE L+L DG ++ EIA +L +S+HTV ++ +K +R Sbjct: 160 RPSDQELARLRDLTEREVDVLRLIRDGLSNAEIAGELVVSLHTVKTHVSRVLMKTGCQSR 219 Query: 222 IQAIAKAI 229 QA A Sbjct: 220 AQAAVLAR 227 >gi|262200127|ref|YP_003271335.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083474|gb|ACY19442.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 410 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 164 FKKRSSAARNLT---ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +R L+ RE L G ++ IA +LG+S +T+ ++ S KL N Sbjct: 335 EAQRRPDEERLSALNPREREVLGHLALGRRNKSIAAELGVSENTIKFHVTSILQKLHVSN 394 Query: 221 RIQAIAKAIRFGY 233 R +A A R G Sbjct: 395 RGEAGLLAARAGI 407 >gi|89092858|ref|ZP_01165810.1| DNA-binding response regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89082883|gb|EAR62103.1| DNA-binding response regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 214 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + +++ + +T+RE + G +EI+E+L +S TV+ Y Sbjct: 126 HELAMRLAVSRPEQKDKRLKEMTQREFEIFVMLAQGSNVKEISEQLCISSKTVSNYTAIL 185 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL+ + + + AI G + Sbjct: 186 KSKLNIGSTAELVHLAIETGLV 207 >gi|115523744|ref|YP_780655.1| response regulator FixJ [Rhodopseudomonas palustris BisA53] gi|115517691|gb|ABJ05675.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 205 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +IE + + ++ L+ RE + G +++ IA + +S T Sbjct: 114 DMIETALMQASAGVKTEAIAQDIAARIATLSPRERQVMDGLVAGLSNKVIAREFDISPRT 173 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + Y + K+ A + + + A+R G Sbjct: 174 IEVYRANVMTKMQAGSLSELVRLAMRGG 201 >gi|116049343|ref|YP_791854.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296390239|ref|ZP_06879714.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313106385|ref|ZP_07792620.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|115584564|gb|ABJ10579.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|310879122|gb|EFQ37716.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 210 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146 + + ++ L I + G V+ +A E + Sbjct: 55 LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114 Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V+ + L + S LTER+ L+L G +++EI L +S Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 +TV ++ S LD +R A K Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199 >gi|325109078|ref|YP_004270146.1| LuxR family transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324969346|gb|ADY60124.1| two component transcriptional regulator, LuxR family [Planctomyces brasiliensis DSM 5305] Length = 220 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE +LA G +++IA KLG++ TV + G KL + Q + ++ Sbjct: 143 QKLTPREREVFELAAKGLLNKQIAMKLGIAEKTVKIHRGRVMHKLQLSSIAQLVQFYLQL 202 >gi|304415493|ref|ZP_07396132.1| putative two-component response regulator [Candidatus Regiella insecticola LSR1] gi|304282652|gb|EFL91176.1| putative two-component response regulator [Candidatus Regiella insecticola LSR1] Length = 189 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L+L K + + +LT RE L+L +G + IAEKL +S TV + + KL Sbjct: 112 HDQVLQLMKTCHNPS-SLTPRERQVLKLITEGACNRVIAEKLTISKKTVETHRLNMMRKL 170 Query: 217 DAVNRIQAIAKAIRFGY 233 D I + R G+ Sbjct: 171 DVHKVADLIDWSHRLGF 187 >gi|239996122|ref|ZP_04716646.1| two component LuxR family transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 214 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 10/123 (8%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL--ELFKKRSSAA 171 P+ + G F ++ EVI H +V +L + Sbjct: 88 PIPMQVMDAGAYGFLTKDAEPD-EVIRAIHKVAAGQKYVDQEVANSIAIGKLLPSSDNPF 146 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE + +G+ +IA +L ++ TVN Y KL + ++ A R Sbjct: 147 DELSSRELTIAMRLTEGHKVPDIARELSINSKTVNTYRYRMFQKLGVNSDVELTHLAYRH 206 Query: 232 GYI 234 I Sbjct: 207 KLI 209 >gi|223934648|ref|ZP_03626568.1| transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896603|gb|EEF63044.1| transcriptional regulator, LuxR family [bacterium Ellin514] Length = 88 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K + +LT+RE L+L G ++ IAE+LG++V V +L KL +R Sbjct: 14 RGQAKAAQQVDDLTDREREVLELVMHGDGNKAIAERLGVTVAAVKWHLQHIYEKLHVHSR 73 Query: 222 IQAIAK 227 +A K Sbjct: 74 TEAALK 79 >gi|212636250|ref|YP_002312775.1| LuxR family DNA-binding response regulator [Shewanella piezotolerans WP3] gi|212557734|gb|ACJ30188.1| DNA-binding response regulator, LuxR family [Shewanella piezotolerans WP3] Length = 216 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L+ R+ S L + DG +++IA +LGLS T+ A+ + +KL R QA+ Sbjct: 149 SLSPRQHSILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRTQAVI 202 >gi|261408228|ref|YP_003244469.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284691|gb|ACX66662.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 202 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 47/115 (40%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + + L GY++ +++ +A ++ A G+ L +LT RE Sbjct: 88 SIRLALLAGAEGYMLKSTQVSSMAQQLRALASGSSVVDANVLKTLMLPEKENRSDLTPRE 147 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++ EIAE+L +S TV L KL+ +R Q R Sbjct: 148 NDILELVALGCSNREIAEQLFISEGTVRNTLSIILDKLELRDRTQLAIYYWRQSL 202 >gi|110834165|ref|YP_693024.1| DNA-binding response regulator GacA [Alcanivorax borkumensis SK2] gi|110647276|emb|CAL16752.1| DNA-binding response regulator GacA [Alcanivorax borkumensis SK2] Length = 217 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S L+ERE + + + +++A+KL LS TVN Y KL + ++ Sbjct: 141 DEGSQLDMLSERELQIMMMIVSCHKVQDVADKLCLSPKTVNTYRYRIFDKLGVTSDVEMA 200 Query: 226 AKAIRFGYI 234 A+R G + Sbjct: 201 LLAVRHGML 209 >gi|90023460|ref|YP_529287.1| two component LuxR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89953060|gb|ABD83075.1| two component transcriptional regulator, LuxR family [Saccharophagus degradans 2-40] Length = 205 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L+++E L+LAG G + EIA L LS TV YL A KL+A NR Sbjct: 133 ELAIAALDDKDPLSDKERKALRLAGSGKKTAEIANDLCLSEGTVRNYLSEAISKLNATNR 192 Query: 222 IQAIAKAIRFGYI 234 I A A + G++ Sbjct: 193 IDAARIARQKGWL 205 >gi|242312015|ref|ZP_04811032.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|242135254|gb|EES21657.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] Length = 202 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 86 VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 145 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 146 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 199 >gi|28871170|ref|NP_793789.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213969159|ref|ZP_03397298.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383947|ref|ZP_07232365.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302064168|ref|ZP_07255709.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302134747|ref|ZP_07260737.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854420|gb|AAO57484.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213926157|gb|EEB59713.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|331016409|gb|EGH96465.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 215 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201 Query: 224 AIAKAIRF 231 A + Sbjct: 202 AALLLQQL 209 >gi|315642413|ref|ZP_07896990.1| LuxR family DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482290|gb|EFU72845.1| LuxR family DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 202 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE S L G ++ ++AE+L LS T+ Y+ S K +RI+AI A + G Sbjct: 140 PLTKREMSVLAGLQTGASTAKMAEELFLSEGTLRNYISSILSKTGTHSRIEAINIAKKNG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|239945114|ref|ZP_04697051.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991577|ref|ZP_04712241.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448577|ref|ZP_06587967.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291351524|gb|EFE78428.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 220 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183 + T + + S R L+ RE L+ Sbjct: 109 AGGVKGYVVTGTRTNIGHPARPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLR 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++ I +GLS TV ++L KL +R +A A+R G I Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|182435268|ref|YP_001822987.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775907|ref|ZP_08235172.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178463784|dbj|BAG18304.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656240|gb|EGE41086.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 220 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183 + T + + S R L+ RE L+ Sbjct: 109 AGGVKGYVVTGTRTNIGHPTRPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLR 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++ I +GLS TV ++L KL +R +A A+R G I Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|157370090|ref|YP_001478079.1| response regulator [Serratia proteamaculans 568] gi|157321854|gb|ABV40951.1| two component transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 218 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + A Q+ +L + + L+ERE + + G EI+E+L Sbjct: 116 RAVQAGQRYIASDIAQQM--ALSQLEPQTETPFSCLSERELQIMLMITKGKKVNEISEQL 173 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS TVN+Y KL+ ++ AIR G Sbjct: 174 SLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208 >gi|158316791|ref|YP_001509299.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112196|gb|ABW14393.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 81 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L L G G ++ EI+ +L + T ++ KL +R+QA+ A G + Sbjct: 13 EREHEVLLLLGRGLSNAEISARLHVGEATAKTHVKRILDKLGLRDRMQAVVFAFDHGLV 71 >gi|332669983|ref|YP_004452991.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339021|gb|AEE45604.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 215 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 16/157 (10%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-------------- 138 + S L+ L A + + + Sbjct: 56 DLDLGDGSGVDLTRELLAARPGLAVLVVTMHEDDDAVVASVRAGARGYLVKSAPPDAVER 115 Query: 139 --LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 +A +I + + + L LT+RE L L G + I+ Sbjct: 116 AVRAVAAGEMILSPAVAQRAMAYVLGGRTATRVPFPQLTDREREVLDLVAAGRDNAVISR 175 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L LS TV ++ + KL +R AI +A G Sbjct: 176 RLSLSPKTVRNHVANVLTKLSLPDRSAAILRAREEGL 212 >gi|325279884|ref|YP_004252426.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] gi|324311693|gb|ADY32246.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] Length = 206 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ + L+ RE + G T++EIA+ L LS HTV + + KL + Sbjct: 128 EEELAGQEVLSSREKEIITCVVKGMTNKEIADALYLSAHTVITHRRNIARKLQIHSPAGL 187 Query: 225 IAKAIRFGYI 234 AI + Sbjct: 188 TIYAIVNKLV 197 >gi|294631223|ref|ZP_06709783.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292834556|gb|EFF92905.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 204 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 DI + GD+ + + + E + + + RL L + Sbjct: 29 DIEVVAQVARGDEVVAAAR--AHGVDVALLDIEMPGCTGIEAAARLHRELPAVKLVVLTT 86 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTE 176 + L + A + + + +A A LT+ Sbjct: 87 FGRPGYLRSAMEAGADAFLVKDAPAAQLAAAVRKVLAGERVIDPTLAAAALAEGANPLTD 146 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ A DG T+ E+A L LS TV YL +A KL NR +A+ A G++ Sbjct: 147 REREVLRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRTAREKGWL 204 >gi|226359606|ref|YP_002777384.1| two-component response regulator DevR [Rhodococcus opacus B4] gi|226238091|dbj|BAH48439.1| two-component response regulator DevR [Rhodococcus opacus B4] Length = 215 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A ++ + +LT +E + L L G+G T+ +IA ++ L+ TV Y+ Sbjct: 128 RAAGVLMDKVRADADGKDGIFAHLTNQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVS 187 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 KL R QA A + Sbjct: 188 RLLTKLGVERRTQAAVLATKM 208 >gi|194445553|ref|YP_002040645.1| hypothetical protein SNSL254_A1504 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404216|gb|ACF64438.1| EsrB [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 212 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +GYT+ I+EKL +S+ TV + + KL + + A R Sbjct: 150 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|149186155|ref|ZP_01864469.1| probable transcriptional regulatory protein, LuxR family protein [Erythrobacter sp. SD-21] gi|148830186|gb|EDL48623.1| probable transcriptional regulatory protein, LuxR family protein [Erythrobacter sp. SD-21] Length = 209 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + + + +L+ RE L+ +G +++ IA +L +S TV + + Sbjct: 121 AKAYGEARRKMIEARNRIASLSPREREVLEWLSEGRSNKMIARELHISPRTVEIHRANMM 180 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KL A + +A+ + Sbjct: 181 SKLGAHHAAEAVRLRLEAHL 200 >gi|170727066|ref|YP_001761092.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812413|gb|ACA86997.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 219 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 155 LTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207 >gi|111022297|ref|YP_705269.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110821827|gb|ABG97111.1| protein kinase/ transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 1084 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 51/178 (28%), Gaps = 12/178 (6%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG-- 117 D L D + + + W T + L AG Sbjct: 907 DLLQEGVRLARLVDDPV--SCANCVEVLAW---IAGTSDPERASTLMGAADALGRAAGSP 961 Query: 118 -IAFP---VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 + P V + +E A E +K + Sbjct: 962 SVFVPDLLVHHEECERSARRMLTEHAFEEARQRGRAMDLGSAASYALEEDPRKPTPPGPA 1021 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE +L +G T++ IA +L +S T ++ KL +R Q A + Sbjct: 1022 TLTKREQQVAELIAEGLTNKAIAARLVISHRTAQGHVEHILTKLGFTSRAQVAAWVVE 1079 >gi|110642151|ref|YP_669881.1| putative transcriptional regulator [Escherichia coli 536] gi|306814902|ref|ZP_07449064.1| hypothetical protein ECNC101_22712 [Escherichia coli NC101] gi|110343743|gb|ABG69980.1| putative transcriptional regulator [Escherichia coli 536] gi|112292719|emb|CAJ76299.1| putative regulatory protein [Escherichia coli] gi|305852296|gb|EFM52748.1| hypothetical protein ECNC101_22712 [Escherichia coli NC101] gi|307626511|gb|ADN70815.1| hypothetical protein UM146_07090 [Escherichia coli UM146] Length = 70 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L++ G +I+ L +S++TV ++ + K+ A N AI A R Sbjct: 9 PLSLRERQVLRMLAQGDEYSQISHNLNISINTVKFHVKNIKHKIQARNTNHAIHIANRNE 68 Query: 233 YI 234 I Sbjct: 69 II 70 >gi|119946176|ref|YP_943856.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] gi|119864780|gb|ABM04257.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] Length = 216 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT RE L+ G +++IA L +S TV +++ S KL A NR++ + Sbjct: 152 SLTRRELMVLKNLSQGEANKQIAVNLFISEATVKSHVSSILKKLGASNRVKVV 204 >gi|78060879|ref|YP_370787.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77968764|gb|ABB10143.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 214 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + + + +S LT R Sbjct: 98 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIHASATASPLDRLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211 >gi|148253086|ref|YP_001237671.1| LuxR transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405259|gb|ABQ33765.1| Regulatory protein, LuxR [Bradyrhizobium sp. BTAi1] Length = 201 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL RE L G TS EIA+ LGLS TV+ ++ +A +KL R QA KA+ Sbjct: 138 NLNHREIETLTWVARGKTSAEIAKILGLSKRTVDFHIDNARIKLGVATRTQAAIKAVTGK 197 Query: 233 YI 234 I Sbjct: 198 LI 199 >gi|330719950|gb|EGG98410.1| hypothetical protein imdm_44 [gamma proteobacterium IMCC2047] Length = 224 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LE+ A LTER+ L L G+G ++++IA +L LS +T+ ++ L+ Sbjct: 142 ALEIPVDLKRAYDVLTERQKEILLLLGEGRSNKDIARRLDLSENTIKVHVSGVLRALNLN 201 Query: 220 NRIQAIAK 227 NR QA Sbjct: 202 NRTQAGVI 209 >gi|317481525|ref|ZP_07940584.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] gi|316902311|gb|EFV24206.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] Length = 99 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 37/59 (62%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L+ RE L+L G+ S+EIA +LG+S++TVN + + KL+A N ++AI Sbjct: 35 SPDKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSKLNANNIMEAIHI 93 >gi|239994527|ref|ZP_04715051.1| DNA-binding response regulator, LuxR family protein [Alteromonas macleodii ATCC 27126] Length = 206 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+++E S L+LA +G ++ IA+ L LS TV YL A KLDA NR+ A A + G Sbjct: 145 PLSQKEMSALKLASEGLKTQGIAQSLFLSEGTVRNYLSEAISKLDATNRVDAARIAKQKG 204 Query: 233 YI 234 ++ Sbjct: 205 WL 206 >gi|284032204|ref|YP_003382135.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811497|gb|ADB33336.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 14/111 (12%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 R+ + LM +AH + ++ L+ RE + Sbjct: 122 RVAAGDPILSPAITRRLMERAATQADAHTQAQEALSR--------------LSPREYDVM 167 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G + EIA +L +SV TV A++ KL+ NR Q A G Sbjct: 168 LAVARGKANAEIAAELFMSVATVKAHISHILTKLEVSNRTQIALLAHDAGL 218 >gi|222778561|gb|ACM67367.1| OtcG [Streptomyces rimosus] Length = 237 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE ++ G ++ +IA +L ++ TV +L + KL AV+RI A+ KA Sbjct: 147 RLSARELQIMENVARGLSNSQIAARLTITEATVKRHLSNVFEKLGAVSRIDAVNKA 202 >gi|212709567|ref|ZP_03317695.1| hypothetical protein PROVALCAL_00609 [Providencia alcalifaciens DSM 30120] gi|212687905|gb|EEB47433.1| hypothetical protein PROVALCAL_00609 [Providencia alcalifaciens DSM 30120] Length = 228 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L ++ L+ RE + + G ++IA+ L LS TVN Y Sbjct: 129 IAQHLALQRLNQREQ-LDIYELLSARELEIMLMITRGTPVKQIADTLSLSPKTVNTYRYR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ + ++ AI +G I Sbjct: 188 MFGKLNISSDVELTHIAISYGLI 210 >gi|158336172|ref|YP_001517346.1| LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306413|gb|ABW28030.1| transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 237 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 17/167 (10%) Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 + + P+ + + L AG P+ Sbjct: 57 SLEHNPLARYLAECHTPVH----EGLVTTPKAWTLICPRPDHWHVMAG---PIVNCGQLV 109 Query: 130 GYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSS--------AARNLTERET 179 G V T ++ + + C + T + ++S+ + + LT RE Sbjct: 110 GAVGCTREKSMPAFDHQDLADLSAVCLHLSTWTTTVRSQQSTMNSQNPLLSTKRLTPREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L G T+ EI ++L ++ ++V L KL +R + +A Sbjct: 170 EIANLVALGRTNAEIGKELWITENSVKQALKRMFRKLKVSSRTKMVA 216 >gi|152999001|ref|YP_001364682.1| response regulator receiver protein [Shewanella baltica OS185] gi|151363619|gb|ABS06619.1| response regulator receiver protein [Shewanella baltica OS185] Length = 200 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + F+++S LTERE L G T+++I+E + LS+ T+ Sbjct: 111 ALVQAIEKAQRESQAAFEQQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170 Query: 206 NAYLGSATVKLDAVNRIQAI 225 + KL+ N + + Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190 >gi|323493301|ref|ZP_08098425.1| response regulator [Vibrio brasiliensis LMG 20546] gi|323312464|gb|EGA65604.1| response regulator [Vibrio brasiliensis LMG 20546] Length = 214 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G I Sbjct: 193 ISGDVELTHLAIRHGMI 209 >gi|296394763|ref|YP_003659647.1| LuxR family two component transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181910|gb|ADG98816.1| two component transcriptional regulator, LuxR family [Segniliparus rotundus DSM 44985] Length = 217 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + ++ + A +++ + + L + S LTE+E L L G+G Sbjct: 108 GMELVSAVRSVGAGRSLLD--SRVTTALVNRLRAAADKHSPLVRLTEQERVLLDLIGEGL 165 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+ +IA+++ L+ T+ Y+ KL R QA Sbjct: 166 TNRQIAQRMFLAEKTIKNYVSRLLTKLGLDRRTQAAVL 203 >gi|269139390|ref|YP_003296091.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|267985051|gb|ACY84880.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|304559286|gb|ADM41950.1| BarA-associated response regulator UvrY [Edwardsiella tarda FL6-60] Length = 218 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + S +L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLTPQSESPFGSLSERELQIMLMITKGSKVTEISEQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|262202633|ref|YP_003273841.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085980|gb|ACY21948.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 216 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + A +LTERE G ++ EIAE+L +S+ TV A++ KLDA NR+Q Sbjct: 146 SAQAAQRAESLTERERDVAVELARGASNAEIAERLYMSLATVKAHISHIFTKLDATNRVQ 205 Query: 224 AIAKAIRFGY 233 G Sbjct: 206 VAICMHDAGL 215 >gi|226361722|ref|YP_002779500.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240207|dbj|BAH50555.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 411 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE L G ++ IA+ LG+S TV ++ KL +R +A A A+ G Sbjct: 344 LNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVASRGEAGAIALEAGI 403 >gi|144898190|emb|CAM75054.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 213 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL----ELFKKRSS 169 + +RLG + ++ A ++++ ++ D RS Sbjct: 86 DRDHVLEAMRLGADGFIPKHLSGGAMVSALQLVLSGERFIPSMLMDSANNQISGASDRSP 145 Query: 170 AAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L L +G ++ IA +L + TV ++LG+ KL NR+QA+ Sbjct: 146 SGDLLGRLTPRERDILHLLREGLPNKVIAARLDVREVTVKSHLGNMFRKLGVQNRLQAMR 205 Query: 227 K 227 Sbjct: 206 M 206 >gi|187478369|ref|YP_786393.1| virulence factors transcription regulator [Bordetella avium 197N] gi|115422955|emb|CAJ49484.1| virulence factors transcription regulator [Bordetella avium 197N] Length = 207 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE + LQL G T+++IA+ + LS T++ Y KL+A ++ I A R Sbjct: 146 SLSNRELAVLQLLAQGLTNKDIADSMFLSNKTISTYKTRLLQKLNATTLVELIDMAKRNN 205 Query: 233 Y 233 Sbjct: 206 L 206 >gi|56963890|ref|YP_175621.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56910133|dbj|BAD64660.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 204 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L K + A LT+RE+ + G +++EIA L LSV TV L KL+ +R Sbjct: 131 QLVKPHADALAGLTKRESEIAECIAQGLSNKEIAAHLFLSVGTVRNTLSVILDKLELRDR 190 Query: 222 IQAIAK 227 Q Sbjct: 191 TQLAIY 196 >gi|88811894|ref|ZP_01127147.1| DNA-binding response regulator, LuxR family protein [Nitrococcus mobilis Nb-231] gi|88790778|gb|EAR21892.1| DNA-binding response regulator, LuxR family protein [Nitrococcus mobilis Nb-231] Length = 245 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT R+ LQL +G T+ +IA+ L LS+ TV A+ +LD + + A+R Sbjct: 172 EVLTPRQRQILQLIVEGNTNSDIADLLHLSIKTVEAHRSELMHRLDIHDVPSLVRYAMRM 231 Query: 232 GYI 234 G I Sbjct: 232 GII 234 >gi|332163428|ref|YP_004300005.1| two-component system response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607927|emb|CBY29425.1| transcriptional regulatory protein UhpA [Yersinia enterocolitica subsp. palearctica Y11] gi|325667658|gb|ADZ44302.1| two-component system response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863674|emb|CBX73779.1| transcriptional regulatory protein uhpA [Yersinia enterocolitica W22703] Length = 196 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 25/55 (45%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A LT RE L G +IAE LGLS TV+ + + KL N ++ Sbjct: 135 AIDPLTRREREVAVLLAQGMEVRDIAESLGLSPKTVHVHRANLFAKLGVSNNVEL 189 >gi|167035315|ref|YP_001670546.1| two component LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166861803|gb|ABZ00211.1| two component transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 207 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + L+ RE + LQ G +++EIA+ + LS TV+ Y Sbjct: 126 NQALHASRGRGAASEADMVNRLSAREMTVLQQLARGRSNKEIADSMYLSNKTVSTYKSRL 185 Query: 213 TVKLDAVNRIQAIAKAIRFGY 233 +KL+A + + I A R G Sbjct: 186 LLKLNARSLVDLIELAQRQGL 206 >gi|166710233|ref|ZP_02241440.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 222 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|111019574|ref|YP_702546.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819104|gb|ABG94388.1| transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 412 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE L G ++ IA+ LG+S TV ++ KL +R +A A A+ G Sbjct: 344 LNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVASRGEAGAIALEAGI 403 >gi|120404945|ref|YP_954774.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] gi|119957763|gb|ABM14768.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] Length = 301 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S A +LT RE L+ +G T+ IA L +S TV ++ KL A NR + Sbjct: 227 ARAPSGRAHSLTRRELEVLEFVAEGATNARIARALTISEGTVKGHMKHILRKLGAANRAE 286 Query: 224 AI 225 A+ Sbjct: 287 AV 288 >gi|332708630|ref|ZP_08428603.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332352586|gb|EGJ32153.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 211 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +RE L+L G G ++ EIA L L+ T+ +L + +LD +R QA A + Sbjct: 155 QRELQILKLLGQGKSNREIAAALNLTEGTIKNHLTNIFCELDVRDRTQAALWAHQH 210 >gi|229173813|ref|ZP_04301353.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228609663|gb|EEK66945.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 186 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ Sbjct: 116 TETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTN 175 Query: 228 AIRFGYI 234 I+ GYI Sbjct: 176 GIKLGYI 182 >gi|116071221|ref|ZP_01468490.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116066626|gb|EAU72383.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 239 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L+ G +++EIA++L L+V T+ + S KL+A +R QA+ Sbjct: 157 APPLSDVLTLREEDVLRGLCRGLSNQEIADQLHLAVDTIKHAVTSLLRKLEARDRTQAVL 216 Query: 227 KAIRFGYI 234 A + + Sbjct: 217 VAFQHNLV 224 >gi|153207364|ref|ZP_01946101.1| transcriptional regulator [Coxiella burnetii 'MSU Goat Q177'] gi|154707552|ref|YP_001424123.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|165918493|ref|ZP_02218579.1| transcriptional regulator [Coxiella burnetii RSA 334] gi|212219060|ref|YP_002305847.1| response regulator [Coxiella burnetii CbuK_Q154] gi|120576673|gb|EAX33297.1| transcriptional regulator [Coxiella burnetii 'MSU Goat Q177'] gi|154356838|gb|ABS78300.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|165917861|gb|EDR36465.1| transcriptional regulator [Coxiella burnetii RSA 334] gi|212013322|gb|ACJ20702.1| response regulator [Coxiella burnetii CbuK_Q154] Length = 211 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S ++++RE L + G +E IA+KL LS TV+ Y + KL+ N + I Sbjct: 143 SGVLDSISDREMEILLMMVRGVPTETIAQKLHLSPKTVSTYRVAIFKKLNVKNDAELILL 202 Query: 228 AIRFGYI 234 +R G + Sbjct: 203 GMRQGLL 209 >gi|29829674|ref|NP_824308.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606783|dbj|BAC70843.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 204 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 61/178 (34%), Gaps = 8/178 (4%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 DI + GD+ L + + E + + + ++ L + Sbjct: 29 DIEVVAQVARGDEVLAAAREH--AVDVALLDIEMPGATGIEAAAQVNRELPAVKLVVLTT 86 Query: 123 RLGFHKNGYVIFTSEF----LMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTE 176 + + EA + + D + A LT+ Sbjct: 87 FGRPGYLRSAMEAGADAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAGGANPLTD 146 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ A DG T+ E+A L LS TV YL +A KL NR +A+ A G++ Sbjct: 147 REREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLAVRNRTEAVRTARDKGWL 204 >gi|53715903|ref|YP_106580.1| LuxR family DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|53723332|ref|YP_112317.1| response regulator protein [Burkholderia pseudomallei K96243] gi|76817735|ref|YP_336620.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121598016|ref|YP_990699.1| LuxR family DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124383003|ref|YP_001025181.1| LuxR family DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126446602|ref|YP_001079535.1| LuxR family DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|167725443|ref|ZP_02408679.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167744363|ref|ZP_02417137.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167821567|ref|ZP_02453247.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167829907|ref|ZP_02461378.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167908316|ref|ZP_02495521.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167916665|ref|ZP_02503756.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167924513|ref|ZP_02511604.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217424235|ref|ZP_03455734.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|237507511|ref|ZP_04520226.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|254176604|ref|ZP_04883262.1| DNA-binding response regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254186993|ref|ZP_04893508.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254192475|ref|ZP_04898914.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|254203600|ref|ZP_04909961.1| DNA-binding response regulator, LuxR family [Burkholderia mallei FMH] gi|254205467|ref|ZP_04911820.1| DNA-binding response regulator, LuxR family [Burkholderia mallei JHU] gi|254264625|ref|ZP_04955490.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|52213746|emb|CAH39801.1| response regulator protein [Burkholderia pseudomallei K96243] gi|52421873|gb|AAU45443.1| DNA-binding response regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|76582208|gb|ABA51682.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|121225814|gb|ABM49345.1| DNA-binding response regulator, LuxR family [Burkholderia mallei SAVP1] gi|126239456|gb|ABO02568.1| DNA-binding response regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|147745839|gb|EDK52918.1| DNA-binding response regulator, LuxR family [Burkholderia mallei FMH] gi|147755053|gb|EDK62117.1| DNA-binding response regulator, LuxR family [Burkholderia mallei JHU] gi|157934676|gb|EDO90346.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697646|gb|EDP87616.1| DNA-binding response regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|169649233|gb|EDS81926.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|217392700|gb|EEC32723.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|234999716|gb|EEP49140.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|254215627|gb|EET05012.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|261827081|gb|ABM99049.2| DNA-binding response regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 215 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 99 VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212 >gi|11467319|ref|NP_043176.1| putative OmpR transcriptional regulator [Cyanophora paradoxa] gi|1351750|sp|P48359|YCF29_CYAPA RecName: Full=Probable transcriptional regulator ycf29 gi|1016120|gb|AAA81207.1| putative OmpR transcriptional regulator [Cyanophora paradoxa] Length = 210 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE S L L +G +++IA L +S+ V Y+ +K NR + + A+ I Sbjct: 150 TPREQSVLNLVVEGLLNKQIAANLNISIRIVEKYVSRLFIKTKTRNRAELVKYALENNLI 209 >gi|21223737|ref|NP_629516.1| chitinase two-component response regulator [Streptomyces coelicolor A3(2)] gi|256785170|ref|ZP_05523601.1| chitinase two-component response regulator [Streptomyces lividans TK24] gi|289769063|ref|ZP_06528441.1| response-regulator [Streptomyces lividans TK24] gi|4323625|gb|AAD16452.1| response-regulator [Streptomyces coelicolor A3(2)] gi|8568799|emb|CAB94548.1| chitinase two-component response regulator [Streptomyces coelicolor A3(2)] gi|289699262|gb|EFD66691.1| response-regulator [Streptomyces lividans TK24] Length = 213 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + R LT RE L G+G ++ +AE+L ++ TV ++ Sbjct: 131 RLIAEFAAKPVREPTADPAVLRELTRREREVLSCLGEGLSNAAVAERLDMAEATVKTHVS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 KL +R+QA A G Sbjct: 191 RLLGKLGLRSRVQAAVLAQELGI 213 >gi|325066413|ref|ZP_08125086.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] Length = 244 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G T++EI ++ LS+ TV ++ K +R+Q + A+R G Sbjct: 174 GLTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTGCRDRVQLVLLALRGG 233 Query: 233 YI 234 I Sbjct: 234 VI 235 >gi|242278505|ref|YP_002990634.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242121399|gb|ACS79095.1| two component transcriptional regulator, LuxR family [Desulfovibrio salexigens DSM 2638] Length = 218 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LTERE L+ GY + EIA+ L +SV TV + + KL ++ + Sbjct: 152 ESLTEREREVLKQVLAGYKNREIADLLVISVKTVEKHRSNFMKKLGLRSKAEL 204 >gi|239944305|ref|ZP_04696242.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990759|ref|ZP_04711423.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447772|ref|ZP_06587162.1| response regulator [Streptomyces roseosporus NRRL 15998] gi|291350719|gb|EFE77623.1| response regulator [Streptomyces roseosporus NRRL 15998] Length = 216 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 T + + LT RE L G+G ++ EIA +L ++ TV ++ Sbjct: 133 LIAEFAGTTPVRTRETADPVVLDTLTRREREVLGCLGEGLSNAEIAARLSMAEATVKTHV 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL+ +R+QA A G Sbjct: 193 SRLLGKLELRSRVQAAVLAQELGI 216 >gi|146297802|ref|YP_001192393.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152220|gb|ABQ03074.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 221 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQL T+ EIAE L LS TV + + +K ++ N + AI+ Sbjct: 157 LSPREIEILQLICQQKTTSEIAEHLFLSPRTVEGHRNNLLLKTESRNIAGLVVYAIQN 214 >gi|126174706|ref|YP_001050855.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|153001005|ref|YP_001366686.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|125997911|gb|ABN61986.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] gi|151365623|gb|ABS08623.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] Length = 220 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205 Query: 225 IA 226 + Sbjct: 206 VI 207 >gi|319785539|ref|YP_004145015.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171427|gb|ADV14965.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 219 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT ++T L + +G +++IA +LG+S T+ A++ + KL +R QA+ Sbjct: 149 RLQALTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLS 208 Query: 230 RFG 232 + G Sbjct: 209 KIG 211 >gi|317489390|ref|ZP_07947902.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325832371|ref|ZP_08165345.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|316911497|gb|EFV33094.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325486007|gb|EGC88462.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 488 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 41/90 (45%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + E + D LE + A LT RE+ L G G T+ I+EKL +S Sbjct: 395 FDAVAEEGAPTAEQQGDALEARCAHVAEAHGLTPRESEILVHLGQGRTARAISEKLVVSE 454 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +TV ++ S KLD +R + I R G Sbjct: 455 NTVKYHIKSIYQKLDVHSRDEVIDLIERSG 484 >gi|295690538|ref|YP_003594231.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432441|gb|ADG11613.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 137 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A LT +E L+ G +++E+A LGLS +TV ++ + KL+ R QAI Sbjct: 68 DAALRALGLTGQEVRVLERLAAGRSNKEMARDLGLSPNTVKTHVANLYGKLEVSRRTQAI 127 Query: 226 AKAIRFGYI 234 KA I Sbjct: 128 GKARDLALI 136 >gi|288941613|ref|YP_003443853.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896985|gb|ADC62821.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 209 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAARNLTERET 179 +FL D + R LT RE Sbjct: 89 PTTVRAIQGGAIDFLEKPASTEQLLQRIEDAFAEDRRRREEAATEYDIRERFRQLTPREH 148 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L L G T+++IA +LG+S TV + K+ A N + Sbjct: 149 EVLTLTTRGLTNKDIARQLGISPRTVENHRARMMEKMGAGNLAEL 193 >gi|239906183|ref|YP_002952922.1| NarL family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239796047|dbj|BAH75036.1| NarL family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 220 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 153 CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L + +S LT RE L+L G+T +IA L LSV T++ + Sbjct: 131 AEVLLDQLLSPTPQAASPDPYAVLTAREREVLKLLVRGHTLTQIAGLLHLSVKTIDTHKT 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL+ ++ Q + A+R G + Sbjct: 191 HVMEKLNLTHKSQLVDYALRHGLL 214 >gi|258655183|ref|YP_003204339.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558408|gb|ACV81350.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 217 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 39/97 (40%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + + A + LT RE +++ +G++S IA+ Sbjct: 119 RAAVRGDPFVCAGATSALIQDYLRRQRSGERIPDSILTAREEEVVKMIAEGHSSRAIADA 178 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +SV TV+ + + KL +R+ AIR G I Sbjct: 179 LVISVKTVDRHRANVLHKLGLHDRLALTRFAIRAGLI 215 >gi|300778489|ref|ZP_07088347.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum ATCC 35910] gi|300503999|gb|EFK35139.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum ATCC 35910] Length = 245 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ RE L+ G+GY S+EIA+ L +SV+TV+ + + KL N QA Sbjct: 189 LSPRELEVLKFVGEGYASKEIADMLSISVNTVSRHRQNILEKLKVKNSTQA 239 >gi|284993288|ref|YP_003411843.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066534|gb|ADB77472.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 222 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + + + E ++H A V + ++ +LT RE L L G Sbjct: 117 DAVALVAAIRAVRRGESAFDSHSATMVVRSLAAPAPSPVAATGPDLTAREREVLTLLARG 176 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++E I +L +S T ++G+ K+ R +A+ + G I Sbjct: 177 LSNEAIGRELYISATTAKFHVGNVMRKMAVSRRAEAVYAGSKLGLI 222 >gi|237808304|ref|YP_002892744.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237500565|gb|ACQ93158.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 215 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L++RE + G ++IAE L LS TVN+Y KL+ ++ AI Sbjct: 146 PFKALSDREMQITMMITKGDKVQDIAESLNLSPKTVNSYRYRLFEKLNISGDVELTRMAI 205 Query: 230 RFGYI 234 R+G + Sbjct: 206 RYGIL 210 >gi|209515178|ref|ZP_03264046.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209504432|gb|EEA04420.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 208 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 6/99 (6%) Query: 140 MLANEVIIEAHGACYQ----VITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEE 193 + + +A + Q + + +L+ RE LQL G + E Sbjct: 105 DTTPDALFDALRSAAQGRRPARAALASVEEDSESRPPHYSLSARELQILQLIVSGKSLTE 164 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 I + +SV T + Y KL+ + Q I AIR G Sbjct: 165 IGRLIFISVKTASTYRSRILSKLNLTSNAQLIDYAIRNG 203 >gi|119025235|ref|YP_909080.1| response regulator [Bifidobacterium adolescentis ATCC 15703] gi|118764819|dbj|BAF38998.1| response regulator containing a CheY-like receiver domain and a HTH DNA-binding domain [Bifidobacterium adolescentis ATCC 15703] Length = 209 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ +E + G+T+ IA +L +S +V Y A KL A +R +A+A +R Sbjct: 146 SMRLSGKELQIIAGYARGFTTSTIAHQLNISEASVKTYARRAFEKLHAHSRAEAVAMCVR 205 Query: 231 FGYI 234 G+I Sbjct: 206 NGWI 209 >gi|7579039|gb|AAF64235.1|AF249735_3 putative response regulator [Pseudomonas putida] Length = 216 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT ++ L + +G +++IA +L +S T+ A++ + KL R QA + Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210 >gi|330872684|gb|EGH06833.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 215 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201 Query: 224 AIAKAIRF 231 A + Sbjct: 202 AALLLQQL 209 >gi|325917495|ref|ZP_08179701.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536289|gb|EGD08079.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 222 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|325277013|ref|ZP_08142678.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097849|gb|EGB96030.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 216 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT ++ L + +G +++IA +L +S T+ A++ + KL R QA + Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210 >gi|325105483|ref|YP_004275137.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] gi|324974331|gb|ADY53315.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] Length = 219 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--------ACYQVITDFLELFKKRSSAARNLTER 177 GY+ T+ + + I E H +V+ F E ++ + ++LT R Sbjct: 108 AGATGYISKTTSSEKII-QAISELHLGGSPMSSQIARKVVASFQEHKVIKNDSCKDLTNR 166 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 E L+ GY +EI +KL +SV TV ++ + KL + I+AI Sbjct: 167 EFEILEFLSRGYRYKEIGDKLFISVETVRKHINNVYKKLQVNSAIEAI 214 >gi|308374292|ref|ZP_07435483.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu006] gi|308342443|gb|EFP31294.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu006] Length = 1077 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1008 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1067 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1068 LVQEAAQH 1075 >gi|283835899|ref|ZP_06355640.1| putative HTH-type transcriptional regulator YhjB [Citrobacter youngae ATCC 29220] gi|291068070|gb|EFE06179.1| putative HTH-type transcriptional regulator YhjB [Citrobacter youngae ATCC 29220] Length = 200 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 3/94 (3%) Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 A + + ++ D + + ++L+ R+ L + G ++++ Sbjct: 102 PRDANAETFTLALNTVAMGMMFIPRDCITATESSGQNIKSLSARQREILTMLAAGESNKQ 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 I L +S TV A+L S +L+ NR QA Sbjct: 162 IGRLLNISTGTVKAHLESLYQRLEVKNRTQAAMM 195 >gi|27381401|ref|NP_772930.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27354569|dbj|BAC51555.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 274 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE ++L +G +++EI +L + T+ +L + KL+ NR A AI Sbjct: 196 LTERERQIMRLVSEGLSNKEIGRRLNTTDGTIKVHLHNIFQKLEISNRTVLAALAI 251 >gi|121605583|ref|YP_982912.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594552|gb|ABM37991.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 224 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 40/116 (34%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + L +V + + G ++ LT R+ Sbjct: 108 TIRLALSRGAAAFVSKADTAEKIIKVIEQVLSGGLPDASAGMAHNTSANATPRPRLTPRQ 167 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++ IA +L LS TV ++ + L +R Q + A R G I Sbjct: 168 CEVLDLLCEGLSNKVIARRLELSEFTVRGHVQAVLGLLGVSSRSQVMFAARRSGLI 223 >gi|120598578|ref|YP_963152.1| two component LuxR family transcriptional regulator [Shewanella sp. W3-18-1] gi|146293343|ref|YP_001183767.1| two component LuxR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120558671|gb|ABM24598.1| two component transcriptional regulator, LuxR family [Shewanella sp. W3-18-1] gi|145565033|gb|ABP75968.1| two component transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] gi|319426643|gb|ADV54717.1| two component transcriptional regulator, LuxR family [Shewanella putrefaciens 200] Length = 220 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 155 LTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207 >gi|119775211|ref|YP_927951.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767711|gb|ABM00282.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 238 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 170 LTPQQYRVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 222 >gi|325069082|ref|ZP_08127755.1| two-component system regulator [Actinomyces oris K20] Length = 243 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L+ +V+ + + + LT R+ L L G ++ EI +LG+ Sbjct: 148 LSPQVLARLVARMPRTASTGTS-RSTWTGEVEALTPRQREVLLLIARGLSNSEIEVELGI 206 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + T +++ + +L A +R Q + A G I Sbjct: 207 TRATCRSHITALLARLGARDRAQLVIAAYEAGLI 240 >gi|320532874|ref|ZP_08033645.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon 171 str. F0337] gi|320134904|gb|EFW27081.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon 171 str. F0337] Length = 152 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E A +L +SV TV ++ + KL NR + A+ Sbjct: 90 DRLSTREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVAR 149 Query: 232 GYI 234 + Sbjct: 150 RIV 152 >gi|312959315|ref|ZP_07773832.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311286032|gb|EFQ64596.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 216 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q + + +++ +LT ++ L + +G +++IA +L +S T+ A++ + Sbjct: 132 QAFEEINVSDEAKAARDGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAI 191 Query: 213 TVKLDAVNRIQAIAKAIRF 231 KL R QA + Sbjct: 192 FRKLGVRTRTQAALLLQQL 210 >gi|258591000|emb|CBE67295.1| Two component transcriptional regulator, LuxR family [NC10 bacterium 'Dutch sediment'] Length = 216 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G + E + S LT+RE + G T++EIA +L +S TV A+ Sbjct: 131 LAGVLESLRHKTHETNRSFSETQEALTDREQEIVGWVIQGMTNKEIAARLEISDKTVKAH 190 Query: 209 LGSATVKLDAVNRIQAI 225 L + KL R++ Sbjct: 191 LSNIFSKLKISRRLELA 207 >gi|284989297|ref|YP_003407851.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062542|gb|ADB73480.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 270 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 2/111 (1%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 P R + + A + + + + R A LTER+ Sbjct: 156 LPRRATAQRLADAVRALARQETALDSAVGRQLVRHMTGDPSQTTAEGR--ALDRLTERQR 213 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L +G ++EEIA +L LS TV ++L + +LD R Q R Sbjct: 214 DVATLVAEGLSNEEIASRLFLSPATVKSHLTAVMRRLDIRTRTQLAILLTR 264 >gi|146284530|ref|YP_001165483.1| two component LuxR family transcriptional regulator [Enterobacter sp. 638] gi|145320663|gb|ABP62809.1| two component transcriptional regulator, LuxR family [Enterobacter sp. 638] Length = 202 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LTER+ LQL G ++++IA+ L +S TV ++ L R +A Sbjct: 138 PAELDLLTERQREVLQLLVQGKSNKQIAQSLNISPFTVRIHVSQVLHVLGVPTRT--VAI 195 Query: 228 AIRFGYI 234 A I Sbjct: 196 AQYSHLI 202 >gi|104781958|ref|YP_608456.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110945|emb|CAK15663.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 282 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 67/232 (28%), Gaps = 25/232 (10%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 ++ L L+ + F P E + + + Sbjct: 28 VEALFAALNQLAPCQAITVFLY----PRKGLPSALFAKDEDGPWLPEGNVQKYLEGYYLL 83 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 F G++ ++ + + + + V L + V Sbjct: 84 CPFYRACMDGVVAGCYRLSDVAPDHFTRSEYYTAFYRHAHLEDELNYLVPLDAQLSIAVA 143 Query: 134 FTSEFLMLANEV---------------IIEAHGACYQVITDFLELFKKRSSAARN----- 173 S + + +V H + F ++ SAA N Sbjct: 144 LGSTRRLGSRQVAELKCIAAWVVAVVRRHWGHLDAEALGGRFESALGRQISAALNNFGSS 203 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE Q G+++ +AE+LG+S TV + + KLD + + Sbjct: 204 LLTERECHIAQYLLRGHSTRSLAERLGISEDTVKTHRKNLYAKLDIATQAEL 255 >gi|15596594|ref|NP_250088.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|9947343|gb|AAG04786.1|AE004569_4 probable two-component response regulator [Pseudomonas aeruginosa PAO1] Length = 210 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146 + + ++ L I + G V+ +A E + Sbjct: 55 LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114 Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V+ + L + S LTER+ L+L G +++EI L +S Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 +TV ++ S LD +R A K Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199 >gi|330807848|ref|YP_004352310.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375956|gb|AEA67306.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 217 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 159 DFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + ++ +A+ +LT ++ L + +G +++IA +L +S T+ A++ + K Sbjct: 135 EAVSVSEEAKAASEGLASLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRK 194 Query: 216 LDAVNRIQAIAKAIRF 231 L+ R QA + Sbjct: 195 LNVRTRTQAALLLQQL 210 >gi|315649798|ref|ZP_07902881.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315274772|gb|EFU38153.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 216 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%) Query: 150 HGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 H + +T L + S + LT E + + L +G +++EIA +L LS T Sbjct: 127 HPDIARKLTGMLRPAPQSVSQSDVLGSLGLTPAEKNIVGLIAEGLSNKEIAGQLYLSEGT 186 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 + Y+ KL+ +R Q Sbjct: 187 IKNYVTEILGKLNLRDRTQIAIF 209 >gi|307727672|ref|YP_003910885.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307588197|gb|ADN61594.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 254 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 2/113 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V V A+ + + + + L + NL+ R+ Sbjct: 138 VPSPDASAERVNPAPTQQATASSAVQDTATTLAEPVAQGQALQPHQQHLLENLSPRQQDI 197 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L G+T++ IA +LG++ TV +L L NR AI A+ G++ Sbjct: 198 MRLVHRGWTNKMIARELGVAEGTVKVHLSVIFRALGVHNRSTAI--AVVNGWL 248 >gi|167836083|ref|ZP_02462966.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 279 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 L P ++ ++ E + L G L P L V+ Sbjct: 63 LRALCQACAPTPVAALTDDASPEHAQALFD--AGVLGVIPRSTRP-HLIVRALEMVLLGG 119 Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + + E +V +L +++ S L+ R+ ++ G T++ I Sbjct: 120 YYVPPSALNLTEPAARVRDGRVEAIISQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A LG+S TV +L S +L A NR A+ AI G++ Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217 >gi|21233483|ref|NP_639400.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770447|ref|YP_245209.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21115332|gb|AAM43282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575779|gb|AAY51189.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 222 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|328542623|ref|YP_004302732.1| Two component transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326412369|gb|ADZ69432.1| Two component transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 233 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 14/218 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + + + + A + Q L D+ + L + G Sbjct: 23 IDDHPLFCDAL---VLTLRMAFALTDVRTANSLSQALGLLSGGLRPDAVVLDLNLPDVSG 79 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + L L + I L AG V + Sbjct: 80 SEGLVALRRRL---------PDVPITVVSALMKPRLVSASLAAGACGFVPKDVDREHM-- 128 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + M + EV I + + + + S LT ++T L+L G ++ Sbjct: 129 CAAFRKMWSGEVYIPDGYTPEEAEGELVLSQQDILSRLATLTPQQTKILKLVCAGKPNKL 188 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 IA L ++ TV A++ + KL A +R QA+ A Sbjct: 189 IAYDLSIAETTVKAHVTAILRKLGAHSRTQAVLVAKEA 226 >gi|324999601|ref|ZP_08120713.1| regulatory protein LuxR [Pseudonocardia sp. P1] Length = 245 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G ++ EI +L +S TV ++ + KL+ R + + A R G Sbjct: 185 LTDRENQVLRLLAVGLSNREIGGRLRISEATVKFHVRNLRDKLEVRRRTEIVYTAARQGI 244 Query: 234 I 234 + Sbjct: 245 V 245 >gi|303256885|ref|ZP_07342899.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|330998866|ref|ZP_08322593.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|302860376|gb|EFL83453.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|329576080|gb|EGG57599.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 220 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ L+L G + + I K+ LS T+ ++ + DA NR +A+ A R G+ Sbjct: 158 LTTRQCQVLKLLSQGDSIKTICRKMDLSEGTIKTHVTALYRAFDARNRTEALIAARRNGF 217 >gi|289570644|ref|ZP_06450871.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289544398|gb|EFD48046.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length = 285 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 197 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 256 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 257 YTKLGLSSRLQLAQQAARRG 276 >gi|257482151|ref|ZP_05636192.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625831|ref|ZP_06458785.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647709|ref|ZP_06479052.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 2250] gi|330987557|gb|EGH85660.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 77 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 41/76 (53%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +E+ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ Sbjct: 1 MNTMEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60 Query: 218 AVNRIQAIAKAIRFGY 233 N+ A +A G Sbjct: 61 VCNKTAAAVQAALSGM 76 >gi|157375088|ref|YP_001473688.1| putative nitrate/nitrite response regulator; NarL [Shewanella sediminis HAW-EB3] gi|157317462|gb|ABV36560.1| putative nitrate/nitrite response regulator; NarL [Shewanella sediminis HAW-EB3] Length = 213 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 15/131 (11%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-----------VITDFLE 162 + F V I + E +IE Q ++ L Sbjct: 81 VIFTVSDSESDVLQAIKFNTDGYLLKDSEPEELIEKINLAIQGEFVISNPLTQIMARSLR 140 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 K+ S +LT+RE L+L G ++++IA KLG++ TV ++ + KL +R+ Sbjct: 141 PNSKKVSPLESLTQRELQNLKLIAAGKSNKDIANKLGIAETTVKVHVKNLLKKLGLKSRV 200 Query: 223 QAIAKAIRFGY 233 +A A+ Sbjct: 201 EAAVWAVEHKI 211 >gi|114568884|ref|YP_755564.1| LuxR family transcriptional regulator [Maricaulis maris MCS10] gi|114339346|gb|ABI64626.1| transcriptional regulator, LuxR family [Maricaulis maris MCS10] Length = 141 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T RE L+ G +++E+A LG+S +TV ++ KLD +RIQAI A Sbjct: 65 AITPRELDVLEALVSGESNKELARTLGVSPNTVKTHIARLFDKLDVTSRIQAIETARDLR 124 Query: 233 YI 234 I Sbjct: 125 LI 126 >gi|331000094|ref|ZP_08323789.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|329572978|gb|EGG54598.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 211 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE + LA G ++ EIA++LG+ TV + +A KL +R++A Sbjct: 143 SLTNREKDVIVLAAKGASNREIADQLGIGQETVKMHCSNAYGKLGVRSRLEA 194 >gi|320012130|gb|ADW06980.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 4/105 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT---ERETSCLQLAG 186 G + + + + +++ +++ RS L+ +RE + L L G Sbjct: 130 GTDLVAAVRTVATGQSMLDP-ATTTRLMESLRVPASTRSEGDERLSALSDREKAVLDLIG 188 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +G T+ +I+++L LS TV ++ KL R+QA A + Sbjct: 189 EGLTNRQISKRLYLSEKTVKNHISRLLSKLGVERRVQAAVIATKA 233 >gi|258654854|ref|YP_003204010.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558079|gb|ACV81021.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 209 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + +T+RE L+ DG+++ EIA++L +S TV + KL A +R A+A + Sbjct: 144 PSLAVTDRELQILRGMTDGFSNLEIAKQLFVSEDTVKTHARRLFRKLGANDRAHAVALGM 203 Query: 230 RFGYI 234 RF + Sbjct: 204 RFELV 208 >gi|190147124|gb|ACE62927.1| global response regulator [Serratia marcescens] Length = 218 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQAETPFSCLSERELQIMLMITKGKKVNEISEQLSLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|171060622|ref|YP_001792971.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170778067|gb|ACB36206.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 222 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 33/68 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LTERE L G+T EI +LGLS HT+ Y+ KL+ +R +A Sbjct: 152 DQLMPNVQLTEREREVLLRVAKGFTLPEIGVQLGLSRHTIADYVKQIYRKLNVSSRAEAA 211 Query: 226 AKAIRFGY 233 +A R G Sbjct: 212 LEAQRLGL 219 >gi|90581277|ref|ZP_01237074.1| putative transcriptional regulator, LuxR family protein [Vibrio angustum S14] gi|90437516|gb|EAS62710.1| putative transcriptional regulator, LuxR family protein [Vibrio angustum S14] Length = 209 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 G++ +S+ L + + +++ + I D ++ + LT ++ Sbjct: 98 HSHGAFGFIPKSSDMRALISALNQVLDGEPFFPEDIADNNNAYRDLADKIATLTPQQYKV 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L + DG +++IA +L +S T+ A++ + KL+ NR QA+ + Sbjct: 158 LGMLSDGLLNKQIAYELTVSEATIKAHMTAIFRKLEVKNRTQAVILLQQLDL 209 >gi|29654049|ref|NP_819741.1| GacA family DNA-binding response regulator [Coxiella burnetii RSA 493] gi|161830987|ref|YP_001596631.1| transcriptional regulator [Coxiella burnetii RSA 331] gi|212212816|ref|YP_002303752.1| response regulator [Coxiella burnetii CbuG_Q212] gi|29541315|gb|AAO90255.1| response regulator [Coxiella burnetii RSA 493] gi|161762854|gb|ABX78496.1| transcriptional regulator [Coxiella burnetii RSA 331] gi|212011226|gb|ACJ18607.1| response regulator [Coxiella burnetii CbuG_Q212] Length = 211 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S ++++RE L + G +E IA+KL LS TV+ Y + KL+ N + I Sbjct: 143 SGVLDSISDREMEILLMMVRGVPTETIAQKLHLSPKTVSTYRVAIFKKLNVKNDAELILL 202 Query: 228 AIRFGYI 234 +R G + Sbjct: 203 GMRQGLL 209 >gi|325927987|ref|ZP_08189208.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325541672|gb|EGD13193.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 222 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|325928170|ref|ZP_08189379.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325541466|gb|EGD12999.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 236 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 15/146 (10%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156 L+ RL I + V LA Q Sbjct: 65 DLTRRLMQRSPNSRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 124 Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L +R++ A LT RE +QL +G ++ +IA +L LSV TV Sbjct: 125 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 184 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 + + +KL+ + Q AI G Sbjct: 185 HRENCMLKLNIQSIAQLTRYAIAQGL 210 >gi|308231817|ref|ZP_07413875.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] gi|308369777|ref|ZP_07419024.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu002] gi|308215965|gb|EFO75364.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] gi|308326515|gb|EFP15366.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu002] Length = 998 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 929 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 988 Query: 224 AIAKAIRF 231 + +A + Sbjct: 989 LVQEAAQH 996 >gi|225407940|ref|ZP_03761129.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme DSM 15981] gi|225042534|gb|EEG52780.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme DSM 15981] Length = 887 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 EV++ AH + +L + + L++++T L L GY + EI+E GLS+ Sbjct: 787 EVMLAAHSFGSR-HKGYLAEAGRETGRPVKLSKQQTRMLTLLAQGYKNAEISEMTGLSIP 845 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ ++ A KL N + A+ KA G I Sbjct: 846 TIKSHTSLAYKKLGVNNAMDAVLKAKELGLI 876 >gi|167625041|ref|YP_001675335.1| two component LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167355063|gb|ABZ77676.1| two component transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 203 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + L+ERE QL G T++++A +L +++ T+ + KL N Sbjct: 129 HLKRTNQALIDTLSEREAQIFQLVIAGNTNKQMANELCVAIRTIEVHRSKLMTKLGVNNL 188 Query: 222 IQAIAKA 228 + + A Sbjct: 189 AELVKLA 195 >gi|145296361|ref|YP_001139182.1| hypothetical protein cgR_2276 [Corynebacterium glutamicum R] gi|140846281|dbj|BAF55280.1| hypothetical protein [Corynebacterium glutamicum R] Length = 687 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 + + F R+G +FT + + A + + Sbjct: 566 MPAYEARILFEYGLVLRRMGRRSQAAEMFTHAEEVFTA---MGAVTLAARCHGERRVAGV 622 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +A+ LT +E L DG +++E+A +L LS TV +L KL +R + Sbjct: 623 GPRRSAQGLTPQEEQITALVVDGCSNQEVARELSLSAKTVEYHLTRVYKKLGVSSRGEL 681 >gi|83646746|ref|YP_435181.1| response regulator [Hahella chejuensis KCTC 2396] gi|83634789|gb|ABC30756.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 219 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +L+ERE + + + +EI++KL LS TVN+Y KL+ Sbjct: 133 MALRPFDAEEGDVFESLSEREMQIAMMIVNCHKVQEISDKLCLSPKTVNSYRYRIFEKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 + ++ AIR G + Sbjct: 193 INSDVELTLLAIRHGML 209 >gi|71736868|ref|YP_273631.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557421|gb|AAZ36632.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 208 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|313499425|gb|ADR60791.1| Putative metal dependent phosphohydrolase [Pseudomonas putida BIRD-1] Length = 479 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 7/114 (6%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P + + + E C VI + + LT RE S Sbjct: 372 PAHSESEAARLLKQDASRGLFDAE-------ICTAVIAAARGERRLPQPKSTLLTTRECS 424 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++E+A +L +S TV ++ S KL R A K + G I Sbjct: 425 ILMEISRGASNKEVARRLEISPSTVRTHMESIFRKLGCSTRAAATLKGLTLGLI 478 >gi|294626355|ref|ZP_06704957.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599356|gb|EFF43491.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 236 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 15/146 (10%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156 L+ RL I + V LA Q Sbjct: 65 DLTRRLMQRSPNSRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 124 Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L +R++ A LT RE +QL +G ++ +IA +L LSV TV Sbjct: 125 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 184 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 + + +KL+ + Q AI G Sbjct: 185 HRENCMLKLNIQSIAQLTRYAIAQGL 210 >gi|229820103|ref|YP_002881629.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566016|gb|ACQ79867.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 208 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D L ++R++ LT E L+L +G T+ +IAE+LG++ TV + Sbjct: 120 AAGRVLLDERSLTRRRAAHEDPTSALTPSERRVLELVAEGLTNRDIAERLGVAEKTVKNH 179 Query: 209 LGSATVKLDAVNRIQAIAK 227 + S K+ R QA+A Sbjct: 180 VTSMLSKMGLQRRTQAVAW 198 >gi|146305270|ref|YP_001185735.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina ymp] gi|145573471|gb|ABP83003.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina ymp] Length = 474 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 3/110 (2%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQL 184 + + + ++L Q + + + L+ERET LQ Sbjct: 365 RAAFSDEQAARVLLDEAEQGRFDPRACQAVISAAHGEQAPLAGKPGNGLLSERETQILQR 424 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A LG+S TV ++ S KL R A KA+ G I Sbjct: 425 ISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGVI 474 >gi|111025634|ref|YP_708054.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110824613|gb|ABG99896.1| protein kinase/ transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 1084 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 151 GACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Y + L + LT+RE L +G T++ IA++L +S TV +++ Sbjct: 1000 AIAYALHEQPLNASDAPVVDRSVRLTKRERQVADLIAEGLTNQAIADRLVISPRTVQSHV 1059 Query: 210 GSATVKLDAVNRIQAIAK-AIRFG 232 KL +R Q A A R G Sbjct: 1060 EHILAKLGFTSRTQIAAWVAERIG 1083 >gi|288919617|ref|ZP_06413946.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349015|gb|EFC83263.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 233 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ + +A +LT +E G ++ EIA + S TV ++G+ K Sbjct: 155 LLDHEFRAPAQPPAAFGSLTGKEREVFFAVVRGLSNTEIARLVFASESTVKTHVGAILRK 214 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R+Q + A G + Sbjct: 215 LALRDRVQIVVFAYEHGVV 233 >gi|260427555|ref|ZP_05781534.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260422047|gb|EEX15298.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 233 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT ++ L L +G +++IA L ++ TV A++ + KL +R QA+ Sbjct: 155 DALERLATLTGQQARILSLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVHSRTQAV 214 Query: 226 AKAIRF 231 A Sbjct: 215 LIAQEA 220 >gi|218892730|ref|YP_002441599.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|218772958|emb|CAW28770.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 210 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146 + + ++ L I + G V+ +A E + Sbjct: 55 LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114 Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V+ + L + S LTER+ L+L G +++EI L +S Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPGLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 +TV ++ S LD +R A K Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199 >gi|167816179|ref|ZP_02447859.1| capsular synthesis regulator component B [Burkholderia pseudomallei 91] Length = 86 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + A R L+ RE ++L G T +IA + G S+ TV+ + +A KL + + Sbjct: 18 RGTDAPRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLF 77 Query: 226 AKAIRFGYI 234 A G + Sbjct: 78 MYATENGLV 86 >gi|167722362|ref|ZP_02405598.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] Length = 180 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 8/114 (7%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 ++ +NFA C L + + + D + H + Sbjct: 31 RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 85 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+IW S +L G++ PV + ++ Sbjct: 86 PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDP 136 >gi|120402438|ref|YP_952267.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955256|gb|ABM12261.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 212 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + L +R+ L+ +E L L G+G T+++IA+++ L+ TV Sbjct: 122 RSLLDNRAAAALMSRLRDTAERADPLLGLSSQERVLLDLLGEGLTNKQIADRMFLAEKTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 Y+ KL R QA R Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFVSRL 207 >gi|77404774|ref|YP_345347.1| DNA-binding HTH domain-containing proteins [Rhodobacter sphaeroides 2.4.1] gi|77390424|gb|ABA81606.1| DNA-binding HTH domain-containing proteins [Rhodobacter sphaeroides 2.4.1] Length = 213 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 12/183 (6%) Query: 52 CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 E++++ D L W ++ E + G Sbjct: 33 VEINHFPAPLTSRYVARGMALKDPLLQWTFMNCGKSRWSALPAEDPAG-----VMVEYGQ 87 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 G + +GYV F E E +++ L + ++R++ Sbjct: 88 HGLTYGCVISI--LSLSDGYVRTVGIFGRADREYTDEEMLRIEKLL---LGMHRRRTAP- 141 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT + L+L DGY + IA LG++ V A L SA + A +QA+ A+ Sbjct: 142 -RLTTSQIEALRLLADGYRYKRIAHILGITESAVKARLKSAVSQTGARTPVQALQIAMNA 200 Query: 232 GYI 234 G + Sbjct: 201 GLL 203 >gi|170745123|ref|YP_001766580.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658724|gb|ACB27778.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 198 Score = 78.4 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 12/130 (9%) Query: 109 EGGLLPFAGI----AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 ++ +G+ L ++ + V+ E L Sbjct: 76 AARIVVVSGLDLPDTVSTALAHGACAFLSKA-DRPDRMMTVLREMLARSSAAPRAGAALC 134 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT R+ L L G G +++ I LGLS HTV ++ L R +A Sbjct: 135 P-------TLTPRQAEVLTLVGRGLSNKMIGRSLGLSEHTVRGHVQGLLSVLGVTRRAEA 187 Query: 225 IAKAIRFGYI 234 + KA + G I Sbjct: 188 VFKAQQLGLI 197 >gi|326202031|ref|ZP_08191901.1| LOW QUALITY PROTEIN: transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] gi|325987826|gb|EGD48652.1| LOW QUALITY PROTEIN: transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] Length = 266 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARN 173 ++ P+ G + S + E+ + Y++ +F + K+ ++ Sbjct: 140 MLSVPIASKKENLGCISILSRENCINQEIALIVQLLSYKISNEFTK-NKRINNNYLCDVR 198 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ + L++ G T + + +LG+S+ TV + + KL+ + +QAI KA+++G Sbjct: 199 LTDSQIRVLKVLAWGCTDKCASAELGISLGTVRYHKTNIFRKLNVESSVQAIMKALKYGI 258 Query: 234 I 234 I Sbjct: 259 I 259 >gi|313204637|ref|YP_004043294.1| two component transcriptional regulator, luxr family [Paludibacter propionicigenes WB4] gi|312443953|gb|ADQ80309.1| two component transcriptional regulator, LuxR family [Paludibacter propionicigenes WB4] Length = 211 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ DF+ K +L+ RE + L G ++IA L LS+ TV Y Sbjct: 129 LAEQLAFDFMP-DKGEQLPHESLSNREQEIMYLLASGKKVKDIAADLQLSISTVFTYRVR 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL + ++ AI + Sbjct: 188 IFEKLKIKSNVELTHYAITNKLV 210 >gi|296138738|ref|YP_003645981.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026872|gb|ADG77642.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 214 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +++ E+ ++ + + + A LT RE G T+ EIA++ Sbjct: 121 DALISPELTVDLLARNRRAGSR----EPAAAGAIAELTPREREVAACVARGRTNAEIADE 176 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQ 223 L +S+ TV +L + +L A NR++ Sbjct: 177 LVISLGTVKTHLSAIGQRLGARNRVE 202 >gi|290961885|ref|YP_003493067.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260651411|emb|CBG74533.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLEL-------FKKRSSAARN 173 L Y+ ++ + +A + A G QV L + Sbjct: 103 LRAGARSYLTKDADRMHIAATLHSAAAGLSVLHPQVQATLLAAASGTAVSDRPARKLPDG 162 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G + EIA++L LS +TV ++ K + +R A A R G Sbjct: 163 LTRREAEILTLIAQGLNNAEIADRLFLSGNTVKTHINRVFAKTRSRDRAAATLYARRHGL 222 >gi|256419151|ref|YP_003119804.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256034059|gb|ACU57603.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 253 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKAIRF 231 L+ RE LQL +G +S+EIA +L +S++TV+ + + KL N I+A IA+AI Sbjct: 193 LSFREKQLLQLIRNGKSSKEIATQLSISINTVSRHRQNILEKLHVKNSIEACRIAEAIEL 252 >gi|73662755|ref|YP_301536.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495270|dbj|BAE18591.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 201 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E L+ G+G+TS+EI++ L LS T+ Y + KLDA NR +A A G Sbjct: 140 PLTPKEQLVLREIGEGHTSKEISKHLFLSYGTIRNYTSTIIDKLDAENRFEAWNIARNKG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|295676996|ref|YP_003605520.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] gi|295436839|gb|ADG16009.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 210 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEE 193 E ++ A + H + + D L + + L+ERE G E Sbjct: 109 EEIVRAIRSVARGHRYLSEAVADTLADNLDKPAAGRPHEALSEREFQIFCKLAAGQLPTE 168 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE+L LSV TV+ Y K+ N AI+ G I Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209 >gi|320012198|gb|ADW07048.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 987 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 51/184 (27%), Gaps = 16/184 (8%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 + E G + + + + +G Sbjct: 807 SAWSERAREEAERLGLPVQRASAMRSA----AQLASHHGATAEAATLLSEAVEVCARSGA 862 Query: 119 AF----PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--- 171 F + L F + + + A G ++ EL + + +A Sbjct: 863 VFWEARSLLLAAPVMTAAGFATRGASMWEQGRRLATGGGAGLLIGLSELTRPPAPSASSA 922 Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT RE + +G T++ IA +L LS TV ++ K R A Sbjct: 923 VPTWLASLTAREREVAGMVAEGLTNQAIATRLFLSPRTVETHVSRVFRKTGVATRAGLAA 982 Query: 227 KAIR 230 R Sbjct: 983 LMAR 986 >gi|256828839|ref|YP_003157567.1| two component LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578015|gb|ACU89151.1| two component transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 215 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 151 GACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ D+L + ++R +NLT RE ++ DG+ S+EIAE L +S+ TV+ + Sbjct: 130 HLAKVIVRDYLLVNRQRKALPPMKNLTAREKEIVRHIIDGWKSKEIAESLFISIKTVDKH 189 Query: 209 LGSATVKLDAVNRIQA 224 + KL + Q Sbjct: 190 RSNILGKLGINSSNQL 205 >gi|164504820|gb|ABY59648.1| UvrY [Yersinia ruckeri] Length = 218 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLEPQVDTPFACLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|146310497|ref|YP_001175571.1| two component LuxR family transcriptional regulator [Enterobacter sp. 638] gi|145317373|gb|ABP59520.1| two component transcriptional regulator, LuxR family [Enterobacter sp. 638] Length = 210 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 17/162 (10%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 I + E+ L RL F I + G + ++ Sbjct: 49 IDVAVMDVAMPDENGLSLLKRLRQQRPGFRAIILSIYDTPAFVQSALDAGASGYLTKRCG 108 Query: 141 LANEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 E +++A H C + L + S LT RE L G + + Sbjct: 109 P--EELVQAVRSVGMGGHYLCADAV-KALRGGQPVSKVLDVLTPREREVFDLLVKGESVK 165 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA L LS TV+ + + KL + I+ + A+ + Sbjct: 166 AIAFTLELSHKTVHVHRANVLGKLQCSSTIELVHFALDNQLL 207 >gi|26000239|gb|AAN75561.1| putative positive transcription regulator BvgA [Bordetella avium 197N] Length = 207 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE + LQL G T+++IA+ + LS T++ Y KL+A ++ I A R Sbjct: 146 SLSNRELAVLQLLAQGLTNKDIADSMFLSNKTISTYKTRLLQKLNATTLVELIDMAKRNN 205 Query: 233 Y 233 Sbjct: 206 L 206 >gi|88191931|pdb|1ZLJ|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain gi|88191932|pdb|1ZLJ|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain gi|88191933|pdb|1ZLJ|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain gi|88191934|pdb|1ZLJ|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain gi|88191935|pdb|1ZLJ|E Chain E, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain gi|88191936|pdb|1ZLJ|F Chain F, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain gi|88191937|pdb|1ZLJ|G Chain G, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain gi|88191938|pdb|1ZLJ|H Chain H, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr C-Terminal Domain Length = 78 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT++E + L L +G T+++IA++ L+ TV Y+ KL R QA A Sbjct: 7 PLSGLTDQERTLLGLLSEGLTNKQIADRXFLAEKTVKNYVSRLLAKLGXERRTQAAVFAT 66 Query: 230 RF 231 Sbjct: 67 EL 68 >gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 305 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 65/214 (30%), Gaps = 13/214 (6%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 + ++A T +D R ++ L N D H Sbjct: 95 EHVVRALEAGGVDYLTKPINID-ELRARIRVHLSN------ARSAQSARVALDAAGRHLL 147 Query: 82 --SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 G + W + Q ++ ++ L A R + G Sbjct: 148 AVRGDGTVRWSTPQATRLVNAATGSDDGLAFVAGRIAEW-MRERSPGERQGTFTLQRASQ 206 Query: 140 MLANEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + A GA + E + LT+RE+ L G ++ +I E Sbjct: 207 TGLQISYLGAIGANEYLFRLTAENGMSDDETLRQHFRLTQRESEVLLWIAKGKSNRDIGE 266 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LGLS TV +L VKL NR A KA + Sbjct: 267 ILGLSARTVTKHLEQIYVKLGVENRASAAVKATQ 300 >gi|322836842|ref|YP_004210756.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9] gi|321165929|gb|ADW71629.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + S+ A LTERE L+ AG+G ++ E+A L L+ T+ YL A KL A NR Sbjct: 136 AAESWSADAGPLTEREREVLRRAGEGESTAELARTLRLTEGTIRNYLSEAISKLGAHNRT 195 Query: 223 QAIAKAIRFGYI 234 +A A G++ Sbjct: 196 EAARLARAKGWL 207 >gi|298253154|ref|ZP_06976946.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] gi|297532549|gb|EFH71435.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] Length = 246 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 F+ L K RS + L +E + L G T+ +IA +LGL +T+N ++ KL Sbjct: 145 ESFIRLSKSRSRSV--LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLH 202 Query: 218 AVNRIQAI 225 NR+QAI Sbjct: 203 VSNRVQAI 210 >gi|283782679|ref|YP_003373433.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] gi|283441376|gb|ADB13842.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] Length = 246 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 F+ L K RS + L +E + L G T+ +IA +LGL +T+N ++ KL Sbjct: 145 ESFIRLSKSRSRSV--LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLH 202 Query: 218 AVNRIQAI 225 NR+QAI Sbjct: 203 VSNRVQAI 210 >gi|186473154|ref|YP_001860496.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195486|gb|ACC73450.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 209 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 38/113 (33%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + L + G + S+ L + ++ L+ RE Sbjct: 96 MSLHTQQAGANGYVSKGRELTEMLTAARTVLLGFDCFPANAPHANKAGGLDVLSPREMEV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G +++EIA +L LS TV+ Y KL + I A I Sbjct: 156 LQYLARGVSNKEIASRLFLSDKTVSTYKTRLCEKLGLSSLAALIEFATLHKLI 208 >gi|111020008|ref|YP_702980.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819538|gb|ABG94822.1| protein kinase/ transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 1035 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E + Y + + A+ LT+RE L +G T++ IA++L +S Sbjct: 945 EQLGFDAAIAYALHEQPSATSTPTADASTRLTKRERQVADLIAEGLTNQAIADRLVISPR 1004 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T ++ KL +R Q A + Sbjct: 1005 TAQGHVEHILAKLGFTSRTQVAAWVVER 1032 >gi|159185575|ref|NP_357562.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159140709|gb|AAK90347.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 747 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F+ +++V V + L++RE LQL G ++++ Sbjct: 653 RIRSFIETSSDVRTALSIFADSVNSPQARALHG------GLSQREAQMLQLLASGMSNKK 706 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA+ L +S TV +LG+ KLD R +AI A ++ Sbjct: 707 IAQTLNISEVTVKFHLGNLFRKLDCNRRSEAIRAAKALDWL 747 >gi|332530777|ref|ZP_08406704.1| response regulator receiver [Hylemonella gracilis ATCC 19624] gi|332039764|gb|EGI76163.1| response regulator receiver [Hylemonella gracilis ATCC 19624] Length = 208 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +++ ++ +L R + LT RE+ L+ G +++IA+ LG+S+ Sbjct: 117 DLVERMLDRARAAFSEH-QLAADRDALLAKLTTRESQVLERIVAGRLNKQIADDLGISIK 175 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAI 229 TV A+ + KL+A + A+ Sbjct: 176 TVEAHRANIMEKLNANTVADLLKIAL 201 >gi|315127232|ref|YP_004069235.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315015745|gb|ADT69083.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 198 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 37/96 (38%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 +F + + + L+ +K + NLT++E L L G S Sbjct: 91 ELFNRGLDAIKQGELWFPRTISDIWMRQMLDTEQKNALQTANLTDKEIKVLNLLFSGLHS 150 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 IA+ L +S TV +L K+ N+ QAI Sbjct: 151 SAIADSLFISEATVRVHLHKIYKKIAVKNKQQAIRW 186 >gi|326773003|ref|ZP_08232287.1| two-component system, regulatory protein [Actinomyces viscosus C505] gi|326637635|gb|EGE38537.1| two-component system, regulatory protein [Actinomyces viscosus C505] Length = 243 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L+ +V+ T + LT R+ L L G ++ EI +LG+ Sbjct: 148 LSPQVLARLVARMPST-TSTGTSRSTWAGEVEALTPRQREVLLLIARGLSNSEIEVELGI 206 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + T +++ + +L A +R Q + A G I Sbjct: 207 TRATCRSHITALLARLGARDRAQLVIAAYEAGLI 240 >gi|223935792|ref|ZP_03627707.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895393|gb|EEF61839.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 37/86 (43%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +G +++ L+ RE LQ G +EIAE++GLS HTVN Y Sbjct: 134 MNGRIARLVLGAFAQQNSTPHNDYGLSAREKDILQYMVKGLIKKEIAEEMGLSYHTVNNY 193 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L KL R A+AK + + Sbjct: 194 LRRIYDKLHVHTRGGAVAKTVEEKLL 219 >gi|254255320|ref|ZP_04948636.1| Response regulator [Burkholderia dolosa AUO158] gi|124901057|gb|EAY71807.1| Response regulator [Burkholderia dolosa AUO158] Length = 252 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 35/104 (33%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 F + A A + S L+ RE + G Sbjct: 134 AMDFLAKPFREQDMLDAVAAALARDERCRSAQRALGDLRSRYATLSAREREVMAFVASGL 193 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++IA ++ LS TV + G A K+DA + + KA G Sbjct: 194 MNKQIAAEMNLSEITVKIHRGQAMKKMDARSLADLVRKAEALGI 237 >gi|71905906|ref|YP_283493.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71845527|gb|AAZ45023.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 221 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+R+ L L G ++ +IA++LGLS TV + + L +R QA+ Sbjct: 151 PDEIGLTDRQGQVLALMVRGLSNRDIADQLGLSEGTVKIHATAVFKALGVSSRTQALVAV 210 Query: 229 IRFGY 233 R+G Sbjct: 211 ARYGI 215 >gi|21244897|ref|NP_644479.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|294626449|ref|ZP_06705049.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667013|ref|ZP_06732241.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21110608|gb|AAM39015.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|292599248|gb|EFF43385.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603230|gb|EFF46653.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 222 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|27382417|ref|NP_773946.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355588|dbj|BAC52571.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 211 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE S +QL +G+T+ ++ L LSV TV + SA KL + + + AIR Sbjct: 149 LTSREQSVVQLIAEGHTNRSMSVILKLSVKTVETHRASAMRKLGMSSTAELVRYAIRKKL 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|115526486|ref|YP_783397.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520433|gb|ABJ08417.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 247 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 12/160 (7%) Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 + W+ E G + I V L + + + Sbjct: 78 FATVSWREEAGERKYFLIAATPRTEHDGTILVLHIDLSVLLRGRRELSTLMIGQGPAAFA 137 Query: 144 EVIIEAHGACYQVITDFLELFKKR------------SSAARNLTERETSCLQLAGDGYTS 191 ++ G IT+ L R +LT + L +G ++ Sbjct: 138 QMEAAMLGVVRGAITEALGASNGRGTKTATIIHGTDDRVIDDLTRPQIELLSYLANGLSN 197 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++IA++ G+S++TV + + + KL+ NR QA A+R Sbjct: 198 QQIAKERGMSINTVKSQVANVIQKLNVANRTQAALFAVRN 237 >gi|309775442|ref|ZP_07670445.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308916831|gb|EFP62568.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 209 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L ERE +QL G ++E+A+ L LS TV YL S KL +R Q + Sbjct: 147 LNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSSLLEKLQLRDRTQLAIFYYQN 204 >gi|326771785|ref|ZP_08231070.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] gi|326637918|gb|EGE38819.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] Length = 203 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 54/169 (31%), Gaps = 8/169 (4%) Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 GD+ L + + + + + G LP + Sbjct: 37 RGDEVLDAVRKH--AVDVALVDIDMPGRDGLAATAEVVGSDLPCRCLIVTTFGRPGYLSR 94 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLA 185 + + + EA + + L + + LTERE L A Sbjct: 95 GMEAGAAGFIVKDTPPEALAEAIRKVHAGLRVIDPELAQESVLLGPNPLTEREKEVLLAA 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L L TV YL SA K A NR +A A G++ Sbjct: 155 ATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203 >gi|289444014|ref|ZP_06433758.1| probable transcriptional regulatory protein [Mycobacterium tuberculosis T46] gi|308369731|ref|ZP_07666793.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu002] gi|289416933|gb|EFD14173.1| probable transcriptional regulatory protein [Mycobacterium tuberculosis T46] gi|308326618|gb|EFP15469.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu002] Length = 282 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 194 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 253 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 254 YTKLGLSSRLQLAQQAARRG 273 >gi|284032256|ref|YP_003382187.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811549|gb|ADB33388.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 217 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L L G+G ++ +IA +L LS T+ ++ LD NR Q Sbjct: 151 DPDPQLEALSGREREILALLGEGLSNADIARRLYLSEGTIKGHVSRLMADLDCQNRTQLA 210 Query: 226 AKA 228 +A Sbjct: 211 LRA 213 >gi|229588732|ref|YP_002870851.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229360598|emb|CAY47455.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 216 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q + + +++ +LT ++ L + +G +++IA +L +S T+ A++ + Sbjct: 132 QAFEEINVSDEAKAARDGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAI 191 Query: 213 TVKLDAVNRIQAIAKAIRF 231 KL R QA + Sbjct: 192 FRKLGVRTRTQAALLLQQL 210 >gi|254182439|ref|ZP_04889033.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|184212974|gb|EDU10017.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] Length = 215 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 99 VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212 >gi|148976347|ref|ZP_01813053.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] gi|145964170|gb|EDK29426.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] Length = 178 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 37/66 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K S LT+RE ++L GDG ++ +IA+ L +S +TV A+L + K+ NR Sbjct: 101 RQCAKTSPYYLKLTKREQQIIKLLGDGASNTQIADTLYVSENTVKAHLHNTFKKIKVKNR 160 Query: 222 IQAIAK 227 +QA+ Sbjct: 161 LQALIW 166 >gi|24371949|ref|NP_715991.1| LuxR family DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24345792|gb|AAN53436.1|AE015483_2 DNA-binding response regulator, LuxR family [Shewanella oneidensis MR-1] Length = 198 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L ++E L+ A +G ++ EIA+ L ++ TV YL A KL+A NR Sbjct: 126 ELAMMAIGDIDPLNDKERRALRFASEGKSTAEIADMLFIAEGTVRNYLSEAIAKLNASNR 185 Query: 222 IQAIAKAIRFGYI 234 I A A + G++ Sbjct: 186 IDAARIAKQKGWL 198 >gi|331010111|gb|EGH90167.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 208 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|300722895|ref|YP_003712190.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC 19061] gi|297629407|emb|CBJ90008.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC 19061] Length = 229 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + ++RE + GY++++IAE+L +S T++ ++ + K + +R + Sbjct: 145 TPPSEIFSKREWEIIFYIMQGYSTKDIAERLFVSYRTISNHIQNVYKKTETNSRKSLVDY 204 Query: 228 AIRFGY 233 Sbjct: 205 CYEHNI 210 >gi|289666156|ref|ZP_06487737.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670749|ref|ZP_06491824.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 222 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|224536867|ref|ZP_03677406.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus DSM 14838] gi|224521533|gb|EEF90638.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus DSM 14838] Length = 215 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 166 KRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ L++RE L+ +G S EIA KL +SV+TV + +KL+A N Sbjct: 143 RKLPPEMPQVLSKREQEVLKCISEGLKSNEIATKLYISVNTVEFHRKQIMLKLEAKNASD 202 Query: 224 AIAKAIRFGYI 234 + KAI+ G + Sbjct: 203 MLIKAIKSGVL 213 >gi|207724571|ref|YP_002254968.1| transcription regulator prhj protein [Ralstonia solanacearum MolK2] gi|206589793|emb|CAQ36754.1| transcription regulator prhj protein [Ralstonia solanacearum MolK2] Length = 175 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 42/100 (42%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + + L E G + E + LT R+ L+ A Sbjct: 62 EAAGALPSGQLQPLTLEQTYAMLGRILEARRHGCEPRPDTGARLSALTPRQHDILREAAH 121 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ EIA+ L +SV TV +++ ++L+A NR + A Sbjct: 122 GKSNVEIAQTLHISVETVKSHVRQILMRLEARNRTELAAI 161 >gi|187929029|ref|YP_001899516.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187725919|gb|ACD27084.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 211 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 5/115 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176 P+ + K G V F + E + +++ +A LT Sbjct: 97 VPLAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARSEDSVAREQKAAKDLLGRLTT 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209 >gi|83593567|ref|YP_427319.1| two component LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576481|gb|ABC23032.1| two component transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 212 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L G ++ +IA+ + LS TV ++G L A +R A+A A R G Sbjct: 151 PLTPRQKEVLAHIDAGLSNRQIAQAMTLSEATVKMHIGRLFKALGAQSRTDALAVARRKG 210 Query: 233 YI 234 + Sbjct: 211 ML 212 >gi|78047210|ref|YP_363385.1| two-component LuxR family response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035640|emb|CAJ23331.1| putative two-component response regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 236 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 15/146 (10%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156 L+ RL I + V LA Q Sbjct: 65 DLTRRLMQRSPNSRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 124 Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L +R++ A LT RE +QL +G ++ +IA +L LSV TV Sbjct: 125 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 184 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 + + +KL+ + Q AI G Sbjct: 185 HRENCMLKLNIQSIAQLTRYAIAQGL 210 >gi|27380999|ref|NP_772528.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27354165|dbj|BAC51153.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 217 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + ++ L+ ++ L + +G +++IA +L ++ TV ++ + KL Sbjct: 137 SIQSADVELAARMATLSAQQLRILAMIVEGKLNKQIAGELDIAEQTVKGHVSTILRKLGV 196 Query: 219 VNRIQAIAKAIRF 231 +R QA A R Sbjct: 197 GSRTQAAVLAERL 209 >gi|223936168|ref|ZP_03628081.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895030|gb|EEF61478.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++++A +LG+S+ T+ + KL+ + AI G Sbjct: 156 LTPREAEVLVLIAKGQPNKQMASELGISIKTIEKHRQQVMNKLNIHDIAGLTRYAISKGI 215 Query: 234 I 234 I Sbjct: 216 I 216 >gi|221135484|ref|ZP_03561787.1| putative regulator in two-component regulatory system ; LuxR family protein [Glaciecola sp. HTCC2999] Length = 216 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + E F K + +LT + L DG +++I L ++ TV A++ + KL Sbjct: 133 IEEVDEAFSKLADNVASLTPSQYKVLCYMRDGLLNKQIGYNLDIAEATVKAHVTAIFRKL 192 Query: 217 DAVNRIQAIAKAIRFGY 233 NR QA+ A + Sbjct: 193 GINNRTQAVLIASQLEL 209 >gi|19553593|ref|NP_601595.1| DNA-binding HTH domain-containing protein [Corynebacterium glutamicum ATCC 13032] gi|62391237|ref|YP_226639.1| ATP-dependent transcription regulator LuxR [Corynebacterium glutamicum ATCC 13032] gi|21325165|dbj|BAB99787.1| DNA-binding HTH domains [Corynebacterium glutamicum ATCC 13032] gi|41326577|emb|CAF21059.1| ATP-dependent transcriptional regulator, LuxR family [Corynebacterium glutamicum ATCC 13032] Length = 687 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 + + F R+G +FT + + A + + Sbjct: 566 MPAYEARILFEYGLVLRRMGRRSQAAEMFTHAEEVFTA---MGAVTLAARCHGERRVAGV 622 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +A+ LT +E L DG +++E+A +L LS TV +L KL +R + Sbjct: 623 GPRRSAQGLTPQEEQITALVVDGCSNQEVARELSLSAKTVEYHLTRVYKKLGVSSRGEL 681 >gi|319901028|ref|YP_004160756.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] gi|319416059|gb|ADV43170.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] Length = 200 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE L L G+ ++EIA+KL +S+ TV ++ + T KL + AI Sbjct: 132 GHELSAREIEVLVLVTKGFINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIYAIM 191 Query: 231 FGYI 234 GY+ Sbjct: 192 HGYV 195 >gi|302866185|ref|YP_003834822.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502743|ref|YP_004081630.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302569044|gb|ADL45246.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409362|gb|ADU07479.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 212 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A + +++ +V+ ++ ++LTE+E L+ +G T+ EIA K Sbjct: 116 RRVAAGQSLLDP-AITTRVLERIRSGVEQ-PRELKSLTEQERRILEYVAEGLTNREIAGK 173 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ TV Y+ S KL R QA A R Sbjct: 174 MFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207 >gi|271965654|ref|YP_003339850.1| ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270508829|gb|ACZ87107.1| ATPase-like protein [Streptosporangium roseum DSM 43021] Length = 963 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + A + R A +L+ R+ +LA G T++EIA ++ LS T Sbjct: 874 DLDRATRLARRWGLRPAPPAPSRDGANDSLSARQQQVARLAAAGLTNQEIAREMFLSPKT 933 Query: 205 VNAYLGSATVKLDAVNRIQAIA 226 V+ +LG+A K A +R + Sbjct: 934 VDKHLGAAMRKFGARSRTELAR 955 >gi|255034530|ref|YP_003085151.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254947286|gb|ACT91986.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 210 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +V+ F + + +LTERE L GY+ + IA + +S +TVN ++ + Sbjct: 130 IAARVLRHFSA--ESEAKKDYHLTEREKQILGFLVKGYSYKLIAAECTISYNTVNNHIRN 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL + +A++ AI+ + Sbjct: 188 IYDKLYVNSATEAVSLAIKERLV 210 >gi|171060520|ref|YP_001792869.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170777965|gb|ACB36104.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 224 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 49/164 (29%), Gaps = 10/164 (6%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNG 130 + + + S L +L+ + + G G Sbjct: 59 CQARRTAVDLLILDLSMPGRSGLDLLRQLQRDRPALKVLMVSMHDSAALVGQCLGAGACG 118 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGY 189 +V +S+ L V G R LT RE LQL G Sbjct: 119 FVAKSSDPQALIGAVRQALRGEVVDTHGPSAPPRAGRRPLPHEQLTGRELEVLQLLLAGL 178 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E A ++GLS TV+ Y KL N I+ + A + G Sbjct: 179 GVEVAAARIGLSEKTVSNYQTQIRQKLGVANSIELVHYARQHGL 222 >gi|126666054|ref|ZP_01737034.1| probable transcriptional regulator [Marinobacter sp. ELB17] gi|126629376|gb|EAZ99993.1| probable transcriptional regulator [Marinobacter sp. ELB17] Length = 257 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT R+ L+ G ++++IA L ++ TV A++ + KL NR+QAI A Sbjct: 191 SLTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLSVHNRVQAILSA 246 >gi|304411512|ref|ZP_07393125.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307306712|ref|ZP_07586454.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304350039|gb|EFM14444.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306910680|gb|EFN41109.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 200 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L G T+++I+E + LS+ T+ + KL N + + Sbjct: 137 DQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTIEVHRAKIMKKLKVNNMAELV 190 >gi|254787619|ref|YP_003075048.1| two-component regulator [Teredinibacter turnerae T7901] gi|237683412|gb|ACR10676.1| two-component regulator [Teredinibacter turnerae T7901] Length = 257 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE + L +G ++++I+ L + + TV ++ + +KL A NR A Sbjct: 173 LTPRERQVIGLLAEGQSNKQISRTLCIELSTVKNHVHNLLIKLKAKNRAHAA 224 >gi|228999272|ref|ZP_04158852.1| Spore germination protein gerE [Bacillus mycoides Rock3-17] gi|228760469|gb|EEM09435.1| Spore germination protein gerE [Bacillus mycoides Rock3-17] Length = 52 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 1 MVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 48 >gi|209550642|ref|YP_002282559.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536398|gb|ACI56333.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 305 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 11/124 (8%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 +R GI + + + + +E + A + + L Sbjct: 186 WMRERAAAG-RDGI---ISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEMLRQR 241 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT+RE+ L G + +I E LGLS TVN +L VKL NR A Sbjct: 242 F-------SLTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASA 294 Query: 225 IAKA 228 KA Sbjct: 295 AVKA 298 >gi|254291175|ref|ZP_04961971.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|150422869|gb|EDN14820.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] Length = 267 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 27 SHLVAVLRCI--AHFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 84 ALQHNTRSGVYHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 144 PRSFPREQITALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRNWVEQAIQSFGAQRL 203 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIAE L ++ TV + +L + + Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAITHGTVKNHRKRIYAQLHVSSLSEL 253 >gi|126456846|ref|YP_001077162.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|126230614|gb|ABN94027.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106a] Length = 215 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 99 VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212 >gi|331085012|ref|ZP_08334099.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408712|gb|EGG88177.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 208 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE S ++L DG ++ EIAE L L TV YL S KL+ +R Q + Sbjct: 148 QLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRTQLAVFFYQH 206 >gi|329894627|ref|ZP_08270432.1| putative two-component response regulator protein [gamma proteobacterium IMCC3088] gi|328922883|gb|EGG30212.1| putative two-component response regulator protein [gamma proteobacterium IMCC3088] Length = 198 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE + ++L +G T+ +I E+L +++ TV + A KL N ++ A R Sbjct: 138 QLTERERAVIRLVLEGLTNPQIGERLHIALRTVKVHRQHAMEKLGVSNLVELTRLAER 195 >gi|312887958|ref|ZP_07747542.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311299439|gb|EFQ76524.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 222 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A + ++ A ++T RE L++ ++ EIA KL LSV TV + + Sbjct: 136 ALQHYSDSKSRQHQYLNATATDITRREKEVLEMICKELSAAEIASKLYLSVRTVEGHRNN 195 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 +K A N + A++ G Sbjct: 196 LILKTGARNTAGLVIFAVKSGL 217 >gi|302528147|ref|ZP_07280489.1| predicted protein [Streptomyces sp. AA4] gi|302437042|gb|EFL08858.1| predicted protein [Streptomyces sp. AA4] Length = 240 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + R ++ LT RET L L G T+ EIAE +S TV +++ + KL A NR Sbjct: 157 RIPRARRRSSDELTLRETQVLGLISIGLTNSEIAEAQSVSAETVRSHVKNVYRKLGARNR 216 Query: 222 IQAIAKAIRFGYI 234 A+A I Sbjct: 217 AHAVALGHLENLI 229 >gi|238788409|ref|ZP_04632203.1| Response regulator uvrY [Yersinia frederiksenii ATCC 33641] gi|238723655|gb|EEQ15301.1| Response regulator uvrY [Yersinia frederiksenii ATCC 33641] Length = 206 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 33/76 (43%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 121 MALGQLEPPTETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 180 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 181 ISGDVELTHLAIRHGL 196 >gi|237798778|ref|ZP_04587239.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021631|gb|EGI01688.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] Length = 208 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|229492601|ref|ZP_04386404.1| response regulator receiver protein [Rhodococcus erythropolis SK121] gi|229320587|gb|EEN86405.1| response regulator receiver protein [Rhodococcus erythropolis SK121] Length = 358 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + L +++ NLT RE L G ++ EI +L S TV ++ K Sbjct: 278 AAGSLVTLRHEKAPR--NLTARELEVLTYLARGLSNAEIGRELHASHRTVATHVERILDK 335 Query: 216 LDAVNRIQAIAKAIRFGYI 234 LD +R+ A A G + Sbjct: 336 LDCHSRVAAAGIATAEGIV 354 >gi|229818835|ref|YP_002880361.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564748|gb|ACQ78599.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 220 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAA--------- 171 L G+++ T++ L + V A +V L+ + + Sbjct: 96 LRAGAAGFLLKTTDAPALLDAVRRVAAGEGALAPEVTRRVLDAVARGPAPGGSDDPAVPH 155 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE L G G ++ IA +L ++ T ++ KL +R+QA A Sbjct: 156 GLAELTDRERDVLACLGRGLSNAGIARELVITEATAKTHVSRVLAKLGCSSRVQAALLAR 215 Query: 230 RFGYI 234 G + Sbjct: 216 EAGVV 220 >gi|192362451|ref|YP_001982262.1| GacA [Cellvibrio japonicus Ueda107] gi|190688616|gb|ACE86294.1| GacA [Cellvibrio japonicus Ueda107] Length = 217 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLA-------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 GYV ++F + + ++ Q+ + S L++RE Sbjct: 96 AGAVGYVTKGADFTEITDAINKVTRGDLYMSNSIAQQLALRTFSGANNQESPFEKLSQRE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +IA +S TVN+Y KLD + ++ A++ + Sbjct: 156 LQTAMLIANGQKVNDIANTFCVSPKTVNSYRYRIFEKLDINSDVELTLLAVKHNLL 211 >gi|221134627|ref|ZP_03560930.1| two component LuxR family transcriptional regulator [Glaciecola sp. HTCC2999] Length = 212 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT ++ ++ G ++EIA +L ++ T+ A++ + KL+ +R Q + Sbjct: 149 KELTPKQLLVIKCLKQGKKNKEIAGELCVTEATIKAHISAIFKKLNVTSRTQIVLL 204 >gi|29829271|ref|NP_823905.1| LuxR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29606378|dbj|BAC70440.1| putative LuxR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 1004 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 15/168 (8%) Query: 82 SGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 G + W + + + + R ++ Sbjct: 832 QGPEGVAWLARAEAEWTRTVSGPDVVVWEKAVTAFAYGDPYERARCRRRLAQALLAAGRR 891 Query: 139 LMLANEVIIE---AHGACYQVITDFLELFKKRSSAARN---------LTERETSCLQLAG 186 A + A + D +E +R A LT RE L+L Sbjct: 892 EEAAEQARAVRETATLLGAAPLLDAVETLVRRGRLAETSPAADGTAVLTARENDVLRLLA 951 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +I E+L ++ T + ++ + KL A +R +A+ A R G + Sbjct: 952 RGRTNRQIGEELFITGKTASVHVSNILAKLSAASRTEAVVIAYREGLL 999 >gi|84625936|ref|YP_453308.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188579161|ref|YP_001916090.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84369876|dbj|BAE71034.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188523613|gb|ACD61558.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 222 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|78049832|ref|YP_366007.1| LuxR family two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038262|emb|CAJ26007.1| two-component system response regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 222 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|325277764|ref|ZP_08143325.1| response regulator receiver protein [Pseudomonas sp. TJI-51] gi|324097102|gb|EGB95387.1| response regulator receiver protein [Pseudomonas sp. TJI-51] Length = 210 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 4/135 (2%) Query: 101 SGQLSVRLEGGLLPFAGIA-FPVRLGFHKNGYVIFTSE--FLMLANEVIIEAHGACYQVI 157 + L ++ +G A P+ + K G F + L + + A +V Sbjct: 66 QAMHARGLALPVVFVSGHADVPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALERAGRVR 125 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + + +LT RE G ++ EIAE+LG+SV TV+ Y G +L Sbjct: 126 QGDQALAQ-VQARIDSLTPRERDVFVPLAQGLSNREIAERLGISVKTVDLYRGRVMKRLQ 184 Query: 218 AVNRIQAIAKAIRFG 232 A + + + AI G Sbjct: 185 AASLAELVGMAIACG 199 >gi|326774074|ref|ZP_08233356.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326636213|gb|EGE37117.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 226 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS+A LT+RE ++ +G + E A +L +S TV ++ + KL NR Q Sbjct: 158 RSTAFAALTDREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRTQVAV 217 Query: 227 KAIR 230 R Sbjct: 218 MYYR 221 >gi|296132086|ref|YP_003639333.1| transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296030664|gb|ADG81432.1| transcriptional regulator, LuxR family [Thermincola potens JR] Length = 287 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 16/148 (10%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 Q RL + IA P+R + S + + I + Sbjct: 141 RGEQHYCRLFKDW---SCIAAPLRGPGGDIIGYLDVSMDSEEELGHTLALVQLAVKYIEE 197 Query: 160 FL-------------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + ++ R L+ RE ++L G T EIA+ + +S TV Sbjct: 198 KMGEKQLSDESLKGADILLDNPFKLRILSIREREVIRLMAGGQTISEIAKAMRISQETVK 257 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y KL + + KA + Sbjct: 258 TYCKRIYKKLGVNRKSDCLKKARELRLL 285 >gi|288918501|ref|ZP_06412852.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350141|gb|EFC84367.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 231 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTER 177 + G L+ A + +T + + LT++ Sbjct: 116 IMAGAAGYVLKQIRGNALVDAVRQVAAGQSLLDPAVTSRVLYRLREGPVEDERLSGLTDQ 175 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L L +G T+ +IA ++ L+ TV Y+ S KL +R QA A + Sbjct: 176 ERRILSLIAEGLTNRQIAARMFLAEKTVKNYVSSMLAKLGMESRTQAAVFATKL 229 >gi|302533152|ref|ZP_07285494.1| two-component system response regulator [Streptomyces sp. C] gi|302442047|gb|EFL13863.1| two-component system response regulator [Streptomyces sp. C] Length = 216 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAAR 172 + +R G ++ A ++ E + L + Sbjct: 92 VYQALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNREARAVLERA 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L+L G T+ EI+ +L + TV +++ + KL A +R QA+ A G Sbjct: 152 ALTEREEAVLRLMARGLTNVEISRELIVGTETVKSHVSAVLGKLGARDRTQAVIAAYESG 211 Query: 233 YI 234 ++ Sbjct: 212 FV 213 >gi|237749020|ref|ZP_04579500.1| two component transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229380382|gb|EEO30473.1| two component transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 214 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L++RE L G + +I +L LSV TV+ + K+ + + + A+ Sbjct: 145 PHTQLSDREFEVFNLLASGKSITDIGAQLHLSVKTVSTHKSRILTKMGMHSLAEIVQYAV 204 Query: 230 RFGYI 234 + Sbjct: 205 TQNLL 209 >gi|167719957|ref|ZP_02403193.1| capsular synthesis regulator component B [Burkholderia pseudomallei DM98] Length = 70 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + A R L+ RE ++L G T +IA + G S+ TV+ + +A KL + + Sbjct: 2 RGTDAPRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLF 61 Query: 226 AKAIRFGYI 234 A G + Sbjct: 62 MYATENGLV 70 >gi|167579202|ref|ZP_02372076.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis TXDOH] Length = 215 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 99 VTQAVRAGASGYLLKDSPATEIVRAIGAVLGGQTFFSEGIAARMIQASAEASPLDRLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIDGQAELIKFAVEH 212 >gi|156974186|ref|YP_001445093.1| hypothetical protein VIBHAR_01901 [Vibrio harveyi ATCC BAA-1116] gi|156525780|gb|ABU70866.1| hypothetical protein VIBHAR_01901 [Vibrio harveyi ATCC BAA-1116] Length = 261 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT---SEFLMLANEVII 147 I ++ + +S + +R+ P+ + G + FT S+ L I Sbjct: 102 QIFDKDKLANSDVVVLRMLSAQGACCHYTIPLVQFGQRWGGLSFTLFGSKGCGLTQSQIE 161 Query: 148 EAHGACY---------QVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + + ++ K + L+ R+ L L G +++EIA Sbjct: 162 QVTFISHMWLSFWQHSKLHRSLNRPDMKTDKENHRMLRLSHRQCDVLGLLAKGLSAKEIA 221 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L LS T+ ++ L+ + + A+R G Sbjct: 222 TELNLSPRTIESHKYRLLDMLELDSHADLVQFALRNGI 259 >gi|325067026|ref|ZP_08125699.1| LuxR family two component transcriptional regulator [Actinomyces oris K20] Length = 203 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 53/169 (31%), Gaps = 8/169 (4%) Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 GD+ L + + + + + LP + Sbjct: 37 RGDEVLDAVREHT--VDVALVDIDMPGRDGLAATAEVVDSDLPCRCLIVTTFGRPGYLSR 94 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLA 185 + + + EA + + L + + LTERE L A Sbjct: 95 GMEAGAAGFIVKDTPPEALAEAIRKVHAGLRVIDPELAQESVLLGPNPLTEREKEVLLAA 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L L TV YL SA K A NR +A A G++ Sbjct: 155 ATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203 >gi|312890670|ref|ZP_07750204.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311296836|gb|EFQ73971.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 305 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NLT +ET + G EIA+KL +S+ TV+ ++ + K+ NR++ K Sbjct: 246 HNLTRKETEISGMVCQGMIYREIADKLFISLRTVDKHIENIFDKVGVSNRVELARK 301 >gi|326774095|ref|ZP_08233377.1| two-component system response regulator [Actinomyces viscosus C505] gi|326636234|gb|EGE37138.1| two-component system response regulator [Actinomyces viscosus C505] Length = 237 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E A +L +SV TV ++ + KL NR + A+ Sbjct: 175 DRLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVAR 234 Query: 232 GYI 234 + Sbjct: 235 RIV 237 >gi|297202079|ref|ZP_06919476.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297148031|gb|EDY58315.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 280 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE + L G T+++IA +S TV ++ KL + +R +A AK Sbjct: 213 QLSAREAEIMDLIASGMTNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAAK 267 >gi|325674463|ref|ZP_08154151.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325554723|gb|EGD24397.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 835 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H V L+ R+ LT E L G EIA +L +S++TV + Sbjct: 754 HEFVVHVRAKLLDANAGRNP---GLTRTEKVVLGELATGRQLREIARELHVSLNTVRTHT 810 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KLD +R +A+ A R G + Sbjct: 811 RNLYRKLDVASRAEAVETATRRGLL 835 >gi|189463679|ref|ZP_03012464.1| hypothetical protein BACINT_00010 [Bacteroides intestinalis DSM 17393] gi|189438629|gb|EDV07614.1| hypothetical protein BACINT_00010 [Bacteroides intestinalis DSM 17393] Length = 217 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-----VITDFLELFKKRSSAARNLTERETS 180 N ++ +S L + G + I+ L T RE Sbjct: 101 CGVNAVILKSSASAELMTAIRCVLRGEAHACPRFAAISQKLNSASAGLQPKDAPTRRERD 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G + EIA+ L +S +TV + K A N I + KA+ G+I Sbjct: 161 VLEAVAKGMNTHEIADLLKISENTVETFRKRLISKFGAKNAIDMVVKAVAQGWI 214 >gi|118589374|ref|ZP_01546780.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118438074|gb|EAV44709.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 205 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT RE L+ DG +++E LG+S TV + KL A N + Sbjct: 141 ADLLTRRELEVLKEITDGASNKEAGRTLGISPRTVEVHRARIMEKLGARNAADLVRI 197 >gi|119717886|ref|YP_924851.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119538547|gb|ABL83164.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 215 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 11/125 (8%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 L A I+ + F + L ++ ++ +++ Sbjct: 89 ALDLGAVASISVGLHAEELVAAIEAFAAGHLQDGSQADLDNQAD-----------RRRQL 137 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 NLT RE L L G ++EE+A +L LS++TV + + S KL+ +R QA+A Sbjct: 138 GRDVNLTPREQDVLGLIVAGCSNEELAAELYLSINTVKSLIRSVYRKLEVTSRAQAVAWG 197 Query: 229 IRFGY 233 + G+ Sbjct: 198 VDHGF 202 >gi|309812510|ref|ZP_07706262.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] gi|308433529|gb|EFP57409.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] Length = 198 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 140 MLANEVIIEAHGACYQ-----VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++EA + L + SS A LT RE L G T++EI Sbjct: 110 DAPPADLVEAVHRASRGETVLAPAVAARLVNRLSSPAPTLTARELDVLDAVAGGATNKEI 169 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A+ L +S TV +L KL A +R + Sbjct: 170 AKHLFVSEATVKTHLVHINEKLGATSRTE 198 >gi|298251689|ref|ZP_06975492.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546281|gb|EFH80149.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 4/100 (4%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEI 194 A +++ +++ + S+A N LT RE L G +E+ Sbjct: 119 ESAARGDMLQQPELMKRILDHATQKRSAPSAAHENSDFHLTAREREVLAGIASGERGKEV 178 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LG++ TV +YL S KL+ +R A+A AI G + Sbjct: 179 GARLGITRRTVESYLNSIYTKLNVDSRAAAVAIAIEHGLL 218 >gi|291166834|gb|EFE28880.1| nitrate/nitrite response regulator protein [Filifactor alocis ATCC 35896] Length = 221 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L GY++ +I E L +S TV ++ + KL NR++A Sbjct: 142 ETLTKRELEVLFFLNQGYSNAKIGEALFVSEGTVKKHISNLLGKLGLENRMEA 194 >gi|190573768|ref|YP_001971613.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011690|emb|CAQ45309.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCL 182 G E L +V + + L + S NL+ RE Sbjct: 98 GAAGYIGKGCDAQELLRAVRDVAAGRRYLGTSIAQNLALSTVEGNGSPFDNLSPRELEVA 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G E+IA +L LS TVN + K+ + I A ++G + Sbjct: 158 LLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLV 209 >gi|325068174|ref|ZP_08126847.1| Regulatory protein, LuxR:Response regulator receiver [Actinomyces oris K20] Length = 237 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E A +L +SV TV ++ + KL NR + A+ Sbjct: 175 DRLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVAR 234 Query: 232 GYI 234 + Sbjct: 235 RIV 237 >gi|302529224|ref|ZP_07281566.1| two component system response regulator [Streptomyces sp. AA4] gi|302438119|gb|EFL09935.1| two component system response regulator [Streptomyces sp. AA4] Length = 213 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 27/64 (42%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE G G ++ EIA LGLS TV +LG K +A NR Q Sbjct: 149 RLEPLTPREREVAVAVGQGSSNAEIARALGLSEATVKVHLGRIMAKTEAANRTQVAILVH 208 Query: 230 RFGY 233 G Sbjct: 209 DAGL 212 >gi|224024514|ref|ZP_03642880.1| hypothetical protein BACCOPRO_01239 [Bacteroides coprophilus DSM 18228] gi|224017736|gb|EEF75748.1| hypothetical protein BACCOPRO_01239 [Bacteroides coprophilus DSM 18228] Length = 262 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 8/170 (4%) Query: 68 LIETYGDDFLFHFNSGLLPIIW-QSIQEETVIESSGQLSVRLEGGLLPFAGIA---FPVR 123 L + DD + L + W + E+ + +R+ + F V Sbjct: 96 LRLIHPDDLHEKYLQELRFLHWISRLPEKNRKDYYLSSRLRMRDDSGNYQPALHRMFYVP 155 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + ++ +L E + V L + A LTERE L+ Sbjct: 156 APWDRGLWLALCLYNPLLT--EFPEGCVVVHAVTGQVRRLE--KCHAGSILTEREKQVLR 211 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G S+ IAE+L +SV+TV+ + KL N I+A A Sbjct: 212 LIDQGMMSKTIAEQLSISVNTVSRHRQEILKKLRVSNSIEACRVARELDL 261 >gi|223937686|ref|ZP_03629588.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893658|gb|EEF60117.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 454 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 17/201 (8%) Query: 35 LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH--------FNSGLLP 86 ++ +N F + I P++++ + LP Sbjct: 259 VFWLNRQPGFECNEIWISAEEALSRLEHRHPDMILVNRLQPGMRAMELVDKLKARFPQLP 318 Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 + + E S Q+ +R+ G F R ++ + L ++ + Sbjct: 319 VF-----TYGIYEDSDQIFIRV---SGVRTGYIFKRRTPGELLEPILGAFKHGALDSKEV 370 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 +Q E +K + A NLT+RE L GY +EIA +LG+S+ TV+ Sbjct: 371 FTQIKNYFQSFFGG-ESSEKENLAMANLTDRELKVLNCVSKGYLDKEIAHELGISLWTVH 429 Query: 207 AYLGSATVKLDAVNRIQAIAK 227 +L + KL+ R +A K Sbjct: 430 NHLKNTYEKLNVHTRTEAALK 450 >gi|166367722|ref|YP_001659995.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090095|dbj|BAG04803.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 223 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR-F 231 LT+RE L ++ IA+ +G S TV +L KL R A+ A+ Sbjct: 152 GLTKREAEVLFWIAQDKSNAAIAKVIGCSEGTVRKHLEHIHGKLGVQTRTAAVIVALEKL 211 Query: 232 GYI 234 G + Sbjct: 212 GLL 214 >gi|126176053|ref|YP_001052202.1| response regulator receiver protein [Shewanella baltica OS155] gi|125999258|gb|ABN63333.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] Length = 200 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L G T+++I+E + LS+ T+ + KL+ N + + Sbjct: 137 DQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTIEVHRAKIMKKLEVNNMAELV 190 >gi|325521630|gb|EGD00405.1| LuxR superfamily regulatory protein [Burkholderia sp. TJI49] Length = 208 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 49/196 (25%), Gaps = 19/196 (9%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSV 106 + EL D +G ++ S + + Sbjct: 9 EPADFELFGMPEAMHRTYVA-RYRMLDPLHPSRCAAGERAVVTLSSELPDERRDASAYWT 67 Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN---------------EVIIEAHG 151 R + +R G A + + Sbjct: 68 RFLRRHDVADVVEIWLRDAGRTVGAFSLLRFDGGAAARGGDGASARFAPGEIDALARLQP 127 Query: 152 ACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + L + R LT RE +L DG +++EIA L L T+ +L Sbjct: 128 VAEAALGPLLRARRGIHRIDCEARLTYREEQIARLVRDGRSNKEIARDLALGQPTIKTHL 187 Query: 210 GSATVKLDAVNRIQAI 225 KL NR + + Sbjct: 188 MRMYRKLGVSNRTELV 203 >gi|325676388|ref|ZP_08156067.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325552949|gb|EGD22632.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 770 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Y + L++ + + + NLT RE +L +G T+ IAE+L ++ TV ++ Sbjct: 686 IAYALGEQPLDVAEPAADSGHNLTRREMQVAELVAEGMTNRAIAERLVIAPRTVEGHVDH 745 Query: 212 ATVKLDAVNRIQAIAK--AIRFG 232 KL +R Q A A R G Sbjct: 746 ILAKLGFTSRTQVAAWMVAQRGG 768 >gi|261210041|ref|ZP_05924339.1| transcriptional regulator LuxR family [Vibrio sp. RC341] gi|260840806|gb|EEX67348.1| transcriptional regulator LuxR family [Vibrio sp. RC341] Length = 265 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 53/230 (23%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 RL + I +F I L L D F Sbjct: 25 SRLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L ++ V + Sbjct: 82 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERSIVVYLGCFK 141 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 142 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 201 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIA+ L +S TV + +L + + Sbjct: 202 SPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYAQLHVSSLSEL 251 >gi|271964741|ref|YP_003338937.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507916|gb|ACZ86194.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 1/132 (0%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLE 162 + AG + + + V + + Sbjct: 85 FDLDEYAFAGLKAGASGFLPKNTRPEELLAAIRSVAAGDAAVSPRITRRLLEKFAPQLMP 144 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +R LT RE L G ++ E+A + L+ TV + +KL +R Sbjct: 145 GAPERDERLALLTSREHEVLVQVARGLSNAEVATAMHLAEATVKTHFSRVLLKLGLRDRA 204 Query: 223 QAIAKAIRFGYI 234 Q + A G I Sbjct: 205 QVVVFAYESGLI 216 >gi|167840961|ref|ZP_02467645.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 99 VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212 >gi|325661231|ref|ZP_08149858.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472738|gb|EGC75949.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium 4_1_37FAA] Length = 208 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE S ++L DG ++ EIAE L L TV YL S KL+ +R Q + Sbjct: 148 QLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRTQLAVFFYQH 206 >gi|320008532|gb|ADW03382.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 221 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 8/106 (7%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAG 186 + + V V +E F S A LT RE L G Sbjct: 111 AGDLIAAVRTVARGEGLIAPAVTRRLIEEFASASPAHEPAAPEALGTLTRREREVLGCLG 170 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G ++ EIA +L ++ TV ++ KL +R QA A + G Sbjct: 171 LGLSNMEIAGRLSMAEATVKTHVSRLLGKLGLRSRAQAAVLAQQLG 216 >gi|121606967|ref|YP_984296.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595936|gb|ABM39375.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 246 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE LQL G+T++EIA L +S HTV Y+ KL ++ +AI +A Sbjct: 179 PEQAMLSSREMEVLQLITRGFTADEIARLLQVSSHTVQTYVRRIYSKLKVRSKAEAIYEA 238 Query: 229 IRFGYI 234 + G + Sbjct: 239 RQQGIL 244 >gi|330967898|gb|EGH68158.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201 Query: 224 AIAKAIRF 231 A + Sbjct: 202 AALLLQQL 209 >gi|330959238|gb|EGH59498.1| LuxR response regulator receiver [Pseudomonas syringae pv. maculicola str. ES4326] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201 Query: 224 AIAKAIRF 231 A + Sbjct: 202 AALLLQQL 209 >gi|330860550|emb|CBX70850.1| response regulator uvrY [Yersinia enterocolitica W22703] Length = 218 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 137 QLEPPTETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGD 196 Query: 222 IQAIAKAIRFGY 233 ++ AIR G Sbjct: 197 VELTHLAIRHGL 208 >gi|327483317|gb|AEA77724.1| transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 265 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 25 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTLRELLFQRYLTHAYLD-DPFYS 81 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 82 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 141 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 142 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 201 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIAE L +S TV + +L + + Sbjct: 202 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 251 >gi|160873591|ref|YP_001552907.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160859113|gb|ABX47647.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315265819|gb|ADT92672.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 200 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + F+++S LTERE L G T+++I+E + LS+ T+ Sbjct: 111 ALVQAIEKAQRESQAAFEQQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170 Query: 206 NAYLGSATVKLDAVNRIQAI 225 + KL+ N + + Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190 >gi|90421195|ref|ZP_01229096.1| two-component response regulator, LuxR family [Aurantimonas manganoxydans SI85-9A1] gi|90334572|gb|EAS48355.1| two-component response regulator, LuxR family [Aurantimonas manganoxydans SI85-9A1] Length = 299 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 46/141 (32%), Gaps = 14/141 (9%) Query: 99 ESSGQLSVRLEGGLLPFAGIAFPV-------RLGFHKNG-YVIFTSEFLMLANEVIIEAH 150 + + AG+ + R G + F E ++ Sbjct: 160 TPWARRHILEAAEGPIAAGVLKTILASLRQGRASATDTGTGLSFAFLGEAGDGEFLLRVS 219 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +A ++ RE L G ++++IA+ L LSV TVN +L Sbjct: 220 QVASDATLIA------SLNAKLPISPREAEVLLWLSRGKSNQDIADILKLSVRTVNKHLE 273 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 + KL NR A A A+ Sbjct: 274 TIFRKLGVENRSAATAIAMEQ 294 >gi|90415949|ref|ZP_01223882.1| regulatory protein, LuxR:Response regulator receiver [marine gamma proteobacterium HTCC2207] gi|90332323|gb|EAS47520.1| regulatory protein, LuxR:Response regulator receiver [marine gamma proteobacterium HTCC2207] Length = 214 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L++RE G +++IAEKL +S TV + K+ + I A + Sbjct: 151 ESLSDREYQIFLELASGKRAKDIAEKLQVSAKTVATHRSRLMQKMGFSTNAELILYANKS 210 Query: 232 GYI 234 G + Sbjct: 211 GLL 213 >gi|325570815|ref|ZP_08146498.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325156325|gb|EGC68507.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 207 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +ERE + ++ G ++EIA+ L LS TV Y+ KL +R Q + Sbjct: 147 SFSEREFAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLGLRDRTQLAIYFYQH 205 >gi|298251437|ref|ZP_06975240.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546029|gb|EFH79897.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1003 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 31/66 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ A +LT RE L+L G+ IA++L LS TVN +L S KL R A Sbjct: 937 SANAFHLTARECEVLRLLALGHPDARIAQELVLSRRTVNTHLRSIYAKLGVSTRTAAARV 996 Query: 228 AIRFGY 233 A Sbjct: 997 AFEQQL 1002 >gi|256379005|ref|YP_003102665.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923308|gb|ACU38819.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 36/87 (41%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A + R L+ER+ L G G ++ +IA +L LS TV + Sbjct: 128 AATARLVAASSAGRRRDADARVRLRALSERDLEVLTRLGRGLSNADIARELFLSEATVKS 187 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y+ VK+D NR QA A G + Sbjct: 188 YVSRMLVKIDCRNRTQAGVLAHEAGLV 214 >gi|226365866|ref|YP_002783649.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244356|dbj|BAH54704.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 211 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 151 GACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++ L +RSS + LT RE L L G+G ++EIA +L + V TV + Sbjct: 128 ALLRRLVDRALDTAPSDERSSTSVALTGREREVLTLVGEGLGNQEIAARLHIGVTTVKTH 187 Query: 209 LGSATVKLDAVNRIQAIAKAI 229 + + K NR++ A Sbjct: 188 VANLMEKTGCDNRVRLAVFAH 208 >gi|111017070|ref|YP_700042.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110816600|gb|ABG91884.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 1/103 (0%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G + + + A +++ A ++ ++ +LT +E + L L G+G Sbjct: 107 RGMELTRAVHDVGAGRSLLD-SRAAAALMVKVRANAGEKDGIFGHLTNQERTLLALLGEG 165 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+ +IA ++ L+ TV Y+ KL R QA A + Sbjct: 166 LTNRQIAARMFLAEKTVKNYVSRLLTKLGVERRTQAAVLATKM 208 >gi|254234497|ref|ZP_04927820.1| hypothetical protein PACG_00356 [Pseudomonas aeruginosa C3719] gi|126166428|gb|EAZ51939.1| hypothetical protein PACG_00356 [Pseudomonas aeruginosa C3719] Length = 210 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146 + + ++ L I + G V+ +A E + Sbjct: 55 LDLRFPGLTRIEMLADLRRQFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114 Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V+ + L + S LTER+ L+L G +++EI L +S Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 +TV ++ S LD +R A K Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199 >gi|107028681|ref|YP_625776.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105897845|gb|ABF80803.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] Length = 212 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 P+ + K G + F E E+ + ++ + ++R++ LT R Sbjct: 97 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVTDLLRLAL 207 >gi|258626430|ref|ZP_05721277.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|258581482|gb|EEW06384.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] Length = 214 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTEISEQLSLSPKTVNSYRYRLFAKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGIL 209 >gi|221067196|ref|ZP_03543301.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|264678380|ref|YP_003278287.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|299532225|ref|ZP_07045619.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|220712219|gb|EED67587.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|262208893|gb|ACY32991.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|298719887|gb|EFI60850.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 217 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 6/91 (6%) Query: 148 EAHGACYQVITDFLEL------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E G +++ E R + LT RE L+ G +++IA+ LG+S Sbjct: 114 ELLGLVERMLDHAREAFTGHQQAASRDALLAKLTGREAQVLERIVAGRLNKQIADDLGIS 173 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + TV A+ + KL+A + A+ G Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIALGQG 204 >gi|171057984|ref|YP_001790333.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775429|gb|ACB33568.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 273 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 5/135 (3%) Query: 100 SSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 S G + GL + P V G G + + + + Sbjct: 121 SGGIYVPPMARGLGGPNLPSVPDAQVFPGLPAQGPLSIAAAGPRDRPDGVHAGMSIGP-W 179 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + L + S A LT R+ L L +G ++ IA++LGLSV TV ++ + L Sbjct: 180 SSRGMALPRPASLDALGLTPRQAKVLMLLMEGKANKVIAKELGLSVETVKDHVAAVLRCL 239 Query: 217 DAVNRIQAIAKAIRF 231 +R+QA+ A+R Sbjct: 240 GVRSRMQAV-IAVRH 253 >gi|171056933|ref|YP_001789282.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774378|gb|ACB32517.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 211 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSE 192 E L+ A + I L L + S L+ERE G Sbjct: 108 APEALVEAVRRVAAGQRYIDPAIAQKLALAQLGDEPSPVDALSEREFEVFVQLARGAGVA 167 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA +L LS TV +L + KL A N+ + A+R+G I Sbjct: 168 DIAAQLKLSASTVGTHLYNVKQKLGASNQAELTLLALRWGLI 209 >gi|170720305|ref|YP_001747993.1| two component LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169758308|gb|ACA71624.1| two component transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 208 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G +++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSAREMMVLQQLARGRSNKEIADSMFLSNKTVSTYKTRLLLKLNAHSLVDLIELARRH 205 Query: 232 GY 233 G Sbjct: 206 GL 207 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281489|gb|ABR89899.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 214 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++I + LT RE + +G++ +IA+ L LS T++ + + Sbjct: 129 ISAKLIKQLHKPETDL--PHTKLTAREFQIFSMLVEGHSVNDIAKILSLSNKTISTHKAA 186 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 K++A + A++ G I Sbjct: 187 VLQKMEASTTASLVYYALKHGLI 209 >gi|330984843|gb|EGH82946.1| LuxR response regulator receiver [Pseudomonas syringae pv. lachrymans str. M301315] Length = 208 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|323965034|gb|EGB60495.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323975971|gb|EGB71064.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|327254883|gb|EGE66499.1| response regulator [Escherichia coli STEC_7v] Length = 210 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S A L+ RE + L+ G +++EIA+KL LS T++A+ + KL + ++ I Sbjct: 144 NSTATVLSNREVTILRYLVSGLSNKEIADKLLLSNKTISAHKSNIYGKLGLHSIVELIDY 203 Query: 228 AIRFGYI 234 A + I Sbjct: 204 AKLYELI 210 >gi|299134343|ref|ZP_07027536.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298591090|gb|EFI51292.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 205 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + +S +L+ RE L+ G +++ IA +S T+ Y + K+ A + Sbjct: 131 AVAADIASRIASLSPRERQVLEGLIAGLSNKLIARDYDISPRTIEVYRANVMTKMQASSV 190 Query: 222 IQAIAKAIRFGYI 234 + + AIR G + Sbjct: 191 SELVRFAIRGGLL 203 >gi|298245139|ref|ZP_06968945.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552620|gb|EFH86485.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 337 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K R LT RE L L G + EIA++L ++ TV+ ++ + KL A NR +A Sbjct: 212 DKPRRRPRPLTGREREILDLMRLGRKNREIAKELCIAESTVHKHVQNIFEKLRARNRTEA 271 Query: 225 I 225 I Sbjct: 272 I 272 >gi|239929732|ref|ZP_04686685.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438058|ref|ZP_06577448.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340953|gb|EFE67909.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 35/74 (47%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + + L+ RE L L G G ++ EIA +L L TV AY+ + +L N Sbjct: 146 LTREAEARARVAVLSPREREVLGLVGAGLSNPEIAARLHLVEGTVKAYVSAVLDRLGVRN 205 Query: 221 RIQAIAKAIRFGYI 234 R+QA A G + Sbjct: 206 RVQAAIVAHEAGLV 219 >gi|238061732|ref|ZP_04606441.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883543|gb|EEP72371.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 221 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 2/105 (1%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLA 185 G + A+ + A +++ F ++ R +T RE L Sbjct: 109 DAGPELLVQAVRSAADGQALIAPSVTVRLLQAFADVPVGRPMTQPVVPVTAREEDVLIAV 168 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G T+ EIA+ L +S+ TV +L S KL NR++ A Sbjct: 169 ARGLTNVEIADALHISLSTVKTHLASLMGKLGVRNRVEIAMWAYE 213 >gi|261404248|ref|YP_003240489.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280711|gb|ACX62682.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 217 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAG 186 + S +A + I+ A ++ + + S R LTERE +L Sbjct: 113 MIASIRDTIAGQFILPA-PVAAKLAARMSRMSEGHSGMLRNRLDRIRLTEREEELARLMV 171 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G + EIA+ L ++ T Y+ + KL+ V+R QAI + Sbjct: 172 QGLNNREIADMLHIAEGTARNYISNLYSKLEVVDRAQAIVR 212 >gi|119963006|ref|YP_946274.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119949865|gb|ABM08776.1| putative two-component system response regulator [Arthrobacter aurescens TC1] Length = 208 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 9/148 (6%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 +P + + +L A I F + Sbjct: 44 AAQEHMPAVVLMDLAMGAGMDGIEAIKQLRQRNPKQAVIVFTTYDSDADIVRAVDAGAMG 103 Query: 140 ----MLANEVIIEAHGACYQ---VITD--FLELFKKRSSAARNLTERETSCLQLAGDGYT 190 A E I A Q V++ LF++ + LT RE L L +G + Sbjct: 104 YLLKDAAPEEIFAAVRGAVQGKSVMSAPVASRLFQQLRNPDEILTPREAELLSLLTEGLS 163 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + ++ ++L +S TV +L KL Sbjct: 164 NRDLGKRLFISEATVKTHLAHIYAKLGV 191 >gi|148265357|ref|YP_001232063.1| putative GAF sensor protein [Geobacter uraniireducens Rf4] gi|146398857|gb|ABQ27490.1| putative GAF sensor protein [Geobacter uraniireducens Rf4] Length = 337 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 13/143 (9%) Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 + + G R+ + A F RLG ++ V +I+ Sbjct: 204 DAAKLALKGMPMERIPEPGIGSAPAFFKSRLGTYRVRTVPLGRNRR---GRLILLERYPA 260 Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + L+ F L+ RE L GY++ EIA+ L +S TV +L Sbjct: 261 EHRLHPKLDAF--------KLSRREKEIAVLVIQGYSNREIADLLFISEQTVKDHLHVMF 312 Query: 214 VKLDAVNRIQAIAK--AIRFGYI 234 K R + AK +R G I Sbjct: 313 EKAGIRRRGELAAKVLGLRSGII 335 >gi|318060483|ref|ZP_07979206.1| regulatory protein LuxR [Streptomyces sp. SA3_actG] gi|318076515|ref|ZP_07983847.1| regulatory protein LuxR [Streptomyces sp. SA3_actF] Length = 223 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 11/117 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-----------HGACYQVITDFLELFKKRSSAAR 172 L +G+++ S + L V A ++ + + + Sbjct: 103 LAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRIIEGHLSGRRQPSDQELARLG 162 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L+L DG ++ EIAE+L +S+HTV ++ +K +R QA A Sbjct: 163 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 219 >gi|239929196|ref|ZP_04686149.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 291 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 166 KRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R +A L+ RE + L G +++IA +S TV ++ KL + +R Sbjct: 213 GRPAAPDRSRFQLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSR 272 Query: 222 IQAIAK 227 +A AK Sbjct: 273 SEAAAK 278 >gi|226947735|ref|YP_002802826.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] gi|226840805|gb|ACO83471.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] Length = 210 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + RE ++ +G +++EI+ KL +S TV Y+ S K +R Q Sbjct: 146 DMFSRREIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIY 201 >gi|187777587|ref|ZP_02994060.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC 15579] gi|187774515|gb|EDU38317.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC 15579] Length = 218 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + RE ++ +G +++EI+ KL +S TV Y+ S K +R Q Sbjct: 154 DMFSRREIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIY 209 >gi|150375944|ref|YP_001312540.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030491|gb|ABR62607.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 12/146 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAF-------PVRLGFHKNGYVIFTSEFLMLANE 144 I + + +S G I F P + K G V F ++ + Sbjct: 54 ILDLGLPDSDGFHVQEALAAAGGSQSIVFLTGKGDIPASVRAMKAGAVDFLTK--PVEAA 111 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++EA Q E +K+++ A LT RET + L G +++IA LG Sbjct: 112 ALLEAVDVALQRARSRRETEEKKANVAMRIDRLTARETQVMHLVVSGLLNKQIAADLGTV 171 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAK 227 T+ + G KL + Sbjct: 172 EKTIKVHRGRMMSKLGVRTVADLVRL 197 >gi|28871293|ref|NP_793912.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|66047117|ref|YP_236958.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|213970871|ref|ZP_03398994.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. tomato T1] gi|257486630|ref|ZP_05640671.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289650462|ref|ZP_06481805.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi str. 2250] gi|289676759|ref|ZP_06497649.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae FF5] gi|298488740|ref|ZP_07006769.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302059914|ref|ZP_07251455.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato K40] gi|302130513|ref|ZP_07256503.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302184715|ref|ZP_07261388.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae 642] gi|28854543|gb|AAO57607.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|63257824|gb|AAY38920.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|213924394|gb|EEB57966.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. tomato T1] gi|298156813|gb|EFH97904.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330877330|gb|EGH11479.1| LuxR response regulator receiver [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330889570|gb|EGH22231.1| LuxR response regulator receiver [Pseudomonas syringae pv. mori str. 301020] gi|330898580|gb|EGH29999.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937554|gb|EGH41495.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi str. 1704B] gi|330949995|gb|EGH50255.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7] gi|330966557|gb|EGH66817.1| LuxR response regulator receiver [Pseudomonas syringae pv. actinidiae str. M302091] gi|330973098|gb|EGH73164.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] gi|330981561|gb|EGH79664.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] gi|331015675|gb|EGH95731.1| LuxR response regulator receiver [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 208 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|21225571|ref|NP_631350.1| LuxR family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|8347028|emb|CAB93733.1| putative LuxR-family regulator [Streptomyces coelicolor A3(2)] Length = 988 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 41/79 (51%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V L + + A LT RE L+L G+++ I E+L +S T + ++ + K Sbjct: 902 VRRGRLAGPARAGAGAAVLTAREQDVLRLLALGHSNRRIGEELFISAKTASVHVSNILAK 961 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L+A +R +A+A A R G + Sbjct: 962 LNAASRTEAVAVAHRQGLV 980 >gi|15597782|ref|NP_251276.1| response regulator GacA [Pseudomonas aeruginosa PAO1] gi|116050573|ref|YP_790608.1| response regulator GacA [Pseudomonas aeruginosa UCBPP-PA14] gi|152986307|ref|YP_001347976.1| response regulator GacA [Pseudomonas aeruginosa PA7] gi|218891334|ref|YP_002440201.1| response regulator GacA [Pseudomonas aeruginosa LESB58] gi|254235572|ref|ZP_04928895.1| response regulator GacA [Pseudomonas aeruginosa C3719] gi|254241019|ref|ZP_04934341.1| response regulator GacA [Pseudomonas aeruginosa 2192] gi|296388946|ref|ZP_06878421.1| response regulator GacA [Pseudomonas aeruginosa PAb1] gi|313107619|ref|ZP_07793804.1| response regulator GacA [Pseudomonas aeruginosa 39016] gi|2851490|sp|Q51373|GACA_PSEAE RecName: Full=Response regulator gacA; AltName: Full=Global activator gi|9948649|gb|AAG05974.1|AE004687_3 response regulator GacA [Pseudomonas aeruginosa PAO1] gi|2105387|gb|AAC45328.1| response regulator GacA [Pseudomonas aeruginosa PAO1] gi|115585794|gb|ABJ11809.1| response regulator GacA [Pseudomonas aeruginosa UCBPP-PA14] gi|126167503|gb|EAZ53014.1| response regulator GacA [Pseudomonas aeruginosa C3719] gi|126194397|gb|EAZ58460.1| response regulator GacA [Pseudomonas aeruginosa 2192] gi|150961465|gb|ABR83490.1| response regulator GacA [Pseudomonas aeruginosa PA7] gi|218771560|emb|CAW27328.1| response regulator GacA [Pseudomonas aeruginosa LESB58] gi|310880306|gb|EFQ38900.1| response regulator GacA [Pseudomonas aeruginosa 39016] Length = 214 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172 FP RL GY+ + E ++ A + I L L ++ S Sbjct: 89 FPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFD 148 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + + + I++KL LS TVN Y KL + ++ A+R G Sbjct: 149 SLSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHG 208 Query: 233 YI 234 + Sbjct: 209 MV 210 >gi|312890682|ref|ZP_07750216.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311296848|gb|EFQ73983.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 305 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NLT +ET + G +IA+KL +S TV+ ++ + K+ NR++ K Sbjct: 246 HNLTRKETEISGMVCQGMIYRDIADKLFISPRTVDKHIENIFEKVGVTNRVELARK 301 >gi|289642055|ref|ZP_06474208.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508128|gb|EFD29074.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 259 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+R+ L+L DG ++ EIA +L ++ TV ++L + +LD +R Q A R Sbjct: 193 LTQRQREVLELVADGLSNAEIAARLFVTEATVKSHLTAVLRRLDLRDRTQLAIYAHR 249 >gi|284046827|ref|YP_003397167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951048|gb|ADB53792.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 35/75 (46%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 E+ ++ LT RE L G + EIA + LS TV +L S KL Sbjct: 140 AAEVRSRQVEDRPLLTPRELEVLGHVAAGRGAPEIARLIHLSPATVKGHLQSLYEKLGVS 199 Query: 220 NRIQAIAKAIRFGYI 234 +R A+A+A+R G + Sbjct: 200 DRAAAVAEAMRRGLL 214 >gi|71279078|ref|YP_270095.1| LuxR family DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71144818|gb|AAZ25291.1| DNA-binding response regulator, LuxR family [Colwellia psychrerythraea 34H] Length = 216 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT ++ L + DG +++IA +LG S T+ ++ +KL NR QA+ Sbjct: 149 SLTPKQHEILLMFADGLLNKQIASQLGTSESTIKSHASIIFLKLGVRNRTQAVI 202 >gi|114045833|ref|YP_736383.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113887275|gb|ABI41326.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 198 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L ++E L+ A +G ++ EIAE L ++ TV YL A KL+A NRI A A + Sbjct: 136 DPLNDKERRALRFASEGKSTAEIAEMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQK 195 Query: 232 GYI 234 G++ Sbjct: 196 GWL 198 >gi|320322629|gb|EFW78722.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str. B076] Length = 77 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 41/75 (54%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +E+ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ Sbjct: 1 MNTMEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60 Query: 218 AVNRIQAIAKAIRFG 232 N+ A +A G Sbjct: 61 VCNKTAAAVQAALSG 75 >gi|297191953|ref|ZP_06909351.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151144|gb|EFH30977.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 232 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 2/127 (1%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 +G V +E + I A ++ + + Sbjct: 104 ERALGAGVSGFLLKSGDPRELIAGVRAAAEGAACLSPEI--ARRVLDRLGAGRMSRAAEA 161 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +A LT RE + L G G ++ EIA +L + TV A++ + +L+ NR+Q Sbjct: 162 RAALEPLTGREREVVALVGAGLSNAEIAARLFVVEGTVKAHVSAVLARLELRNRVQLAIL 221 Query: 228 AIRFGYI 234 A G + Sbjct: 222 AYEAGVV 228 >gi|262274271|ref|ZP_06052082.1| BarA-associated response regulator UvrY [Grimontia hollisae CIP 101886] gi|262220834|gb|EEY72148.1| BarA-associated response regulator UvrY [Grimontia hollisae CIP 101886] Length = 214 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + + +NL+ERE + + G +I+E+L LS TVN+Y KL Sbjct: 133 MALSQFSPAQENPFKNLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLG 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGML 209 >gi|192289923|ref|YP_001990528.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192283672|gb|ACF00053.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 228 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 3/115 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTER 177 P+ + K G V F ++ A + E + S +LT R Sbjct: 94 IPMTVRAMKAGAVNFL-PKPFDEATLLAGVREAVSRARQKRSEAERDHSLRMHYESLTSR 152 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E + L G +++IA +L LS TV + G+ K+ A + + + A G Sbjct: 153 EREVMGLVTAGLMNKQIAWQLSLSEITVKIHRGNMMRKMQAKSLAELVRMADALG 207 >gi|241663217|ref|YP_002981577.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|309782581|ref|ZP_07677304.1| transcriptional regulatory protein FixJ [Ralstonia sp. 5_7_47FAA] gi|240865244|gb|ACS62905.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] gi|308918672|gb|EFP64346.1| transcriptional regulatory protein FixJ [Ralstonia sp. 5_7_47FAA] Length = 211 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 5/115 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176 P+ + K G V F + E + +++ +A LT Sbjct: 97 VPLAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARSEDSVAREQKAAKDLLSRLTT 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209 >gi|145588917|ref|YP_001155514.1| response regulator receiver protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047323|gb|ABP33950.1| two component transcriptional regulator, LuxR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 153 KLTGRERQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 209 >gi|83717466|ref|YP_440522.1| LuxR family DNA-binding response regulator [Burkholderia thailandensis E264] gi|167617321|ref|ZP_02385952.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257141183|ref|ZP_05589445.1| LuxR family DNA-binding response regulator [Burkholderia thailandensis E264] gi|83651291|gb|ABC35355.1| DNA-binding response regulator, LuxR family [Burkholderia thailandensis E264] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 99 VTQAVRAGASGYLLKDSPATEIVRAIGAVLGGQTFFSEGIAARMIQASAEASPLDRLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIDGQAELIKFAVEH 212 >gi|83943530|ref|ZP_00955989.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. EE-36] gi|83845762|gb|EAP83640.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. EE-36] Length = 213 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTE 176 L +GY++ +E +L+ ++ + + + I + L +S LTE Sbjct: 92 SLSAGADGYLLKETEAAVLSRQLTQLSMGLPAISPSVARRIMEHFRLTGPVASLDGRLTE 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L L G + E+A L ++ TV Y+ KL +R +A A R G Sbjct: 152 RETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANRLGL 208 >gi|116669782|ref|YP_830715.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116609891|gb|ABK02615.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 910 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 122 VRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 + L ++ V+ +F ++ A +++ L + LTERE Sbjct: 800 LHLDAVESRCVVLALDFAREKGDSQSARAAQHRLDRLVETLPVLPLMPHTVGPELTERER 859 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++A G +++E+A +L LS+ TV +L K+ +R + Sbjct: 860 QVARMASQGLSNKEVANRLQLSIRTVEGHLYQIFTKMGISSRSEL 904 >gi|312138548|ref|YP_004005884.1| sensor kinase/luxr response regulator fusion [Rhodococcus equi 103S] gi|311887887|emb|CBH47199.1| putative sensor kinase/LuxR response regulator fusion [Rhodococcus equi 103S] Length = 751 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Y + L++ + + + NLT RE +L +G T+ IAE+L ++ TV ++ Sbjct: 667 IAYALGEQPLDVAEPAADSGHNLTRREMQVAELVAEGMTNRAIAERLVIAPRTVEGHVDH 726 Query: 212 ATVKLDAVNRIQAIAK--AIRFG 232 KL +R Q A A R G Sbjct: 727 ILAKLGFTSRTQVAAWMVAQRGG 749 >gi|255535468|ref|YP_003095839.1| Regulatory protein, LuxR:Response regulator receiver [Flavobacteriaceae bacterium 3519-10] gi|255341664|gb|ACU07777.1| Regulatory protein, LuxR:Response regulator receiver [Flavobacteriaceae bacterium 3519-10] Length = 221 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + +K S + L+ERE ++L G+T+ EIA L +S+ TV + Sbjct: 133 HFSDEAAKALDSFREKIISYPSIKLSEREKQIVKLMFAGFTNTEIAAALFISISTVETHR 192 Query: 210 GSATVKLDAVN 220 + K + + Sbjct: 193 KNIYRKTETHS 203 >gi|171912872|ref|ZP_02928342.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 220 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 12/152 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + + +G GI F G + + + Sbjct: 56 VLDLQMPGLNGFALQDELTARGSHEGIVF--ISGHGDVPACARALKKGAVDFLMKPFGDD 113 Query: 152 ACYQVITDFLELFKKRSSAA----------RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + L ++ A LT RE L+ GY +++IA LG S Sbjct: 114 RLLASVEEALAYSERTLKQALSRQGVQELLATLTPREMEVLRGVIAGYLNKQIAADLGTS 173 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+ + G KL+ + + + G Sbjct: 174 EKTIKVHRGRVMEKLEVHSVAELVRMCAMIGL 205 >gi|126442394|ref|YP_001064239.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126221885|gb|ABN85390.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 668] Length = 215 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++ + I + +S LT R Sbjct: 99 VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KLD + + I A+ Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212 >gi|271963970|ref|YP_003338166.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507145|gb|ACZ85423.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 35/85 (41%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A ++ D L LT RE L L G G ++ EIA +L L +V Y Sbjct: 130 AARVIGELAGDRLARGSAARERIDVLTRREREVLGLVGAGLSNAEIARRLHLVEGSVKTY 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 + + +L NR+QA A G Sbjct: 190 VSTILGRLGVRNRVQAAVLAHEAGL 214 >gi|212634641|ref|YP_002311166.1| nitrate/nitrite DNA-binding response regulator [Shewanella piezotolerans WP3] gi|212556125|gb|ACJ28579.1| Nitrate/nitrite DNA-binding response regulator, putative [Shewanella piezotolerans WP3] Length = 206 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L+L G ++ IA+++ +SV TV + + KL + + AI G Sbjct: 146 TQREQLVLRLISLGMNNKRIAQEMDVSVRTVETHKRNIKQKLMIDSTAGLVRYAIDHGL 204 >gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806] gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 218 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G ++ EI +KL LS T+ Y+ S K NR + + ++ Sbjct: 156 KLTNREREVLEHLARGLSNSEIGQKLHLSSRTIEKYVSSLLRKTTTNNRAELVRFSLEHR 215 Query: 233 YI 234 I Sbjct: 216 LI 217 >gi|15890276|ref|NP_355948.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15158472|gb|AAK88733.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 492 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 24/170 (14%) Query: 88 IWQSIQEETVIESSGQLSVRLE--------GGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 +W + IE + ++ + I R + VI+ + + Sbjct: 317 LWDDVPARRDIEKRLKDNIPIRNEAMRMNLADDGTAECIVSAERAEINDQLCVIWAIQDV 376 Query: 140 MLANEVIIEAHGACYQVITDF-------------LELFKKRSSAARNL---TERETSCLQ 183 E A V+TD L + +S + +L T+RE L Sbjct: 377 TERRRSENELIEAIESVMTDTSWFSRTVVERLAGLRQNSRGASPSASLKDLTDREEQILS 436 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG + +E++++L LS HT+ ++ S K+ R A+ A G+ Sbjct: 437 LICDGSSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWARERGF 486 >gi|83954912|ref|ZP_00963590.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. NAS-14.1] gi|83840638|gb|EAP79810.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. NAS-14.1] Length = 213 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTE 176 L +GY++ +E +L+ ++ + + + I + L +S LTE Sbjct: 92 SLSAGADGYLLKETEAAVLSRQLTQLSMGLPAISPSVARRIMEHFRLTGPVASLDGRLTE 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L L G + E+A L ++ TV Y+ KL +R +A A R G Sbjct: 152 RETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANRLGL 208 >gi|319781056|ref|YP_004140532.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166944|gb|ADV10482.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 219 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G + +IAE+LG+S+ T + + KL N + A A+R G Sbjct: 156 PLTRRERQILQLVAQGMITRDIAERLGISLPTARKHRENLMGKLSLHNTAELTAYAVRLG 215 Query: 233 Y 233 Sbjct: 216 L 216 >gi|300022440|ref|YP_003755051.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299524261|gb|ADJ22730.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 218 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + ++ L++R+ + LA G++++EIA L +S TV Y + A N + Sbjct: 136 RLAARINELSDRQRQVMDLAVKGHSNKEIALALKISPRTVETYRAWVMERTGARNIADLV 195 Query: 226 AKAIRF 231 A+R Sbjct: 196 RIAVRL 201 >gi|291302996|ref|YP_003514274.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572216|gb|ADD45181.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 213 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE ++ G T+ EIAE+L ++V TV ++L S K++ NR + A Sbjct: 152 LSERELDVVERVARGRTNNEIAEELFVAVSTVKSHLESVRAKINVRNRTEIAVWAWENKI 211 Query: 234 I 234 + Sbjct: 212 V 212 >gi|223984565|ref|ZP_03634695.1| hypothetical protein HOLDEFILI_01990 [Holdemania filiformis DSM 12042] gi|223963470|gb|EEF67852.1| hypothetical protein HOLDEFILI_01990 [Holdemania filiformis DSM 12042] Length = 67 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L Y ++EI+E+L +S TV ++ + +KL R QA+ + IR Sbjct: 5 LTRREKEVFDLLVSNYDTKEISEQLNISEKTVRNHISNVILKLAVKGRAQAVVELIR 61 >gi|127512474|ref|YP_001093671.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126637769|gb|ABO23412.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 219 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + ++ +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA Sbjct: 146 DQMAAKLADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205 Query: 225 IA 226 + Sbjct: 206 VI 207 >gi|312140063|ref|YP_004007399.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311889402|emb|CBH48718.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 863 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H V L+ R+ LT E L G EIA +L +S++TV + Sbjct: 782 HEFVVHVRAKLLDANAGRNP---GLTRTEKVVLGELATGRQLREIARELHVSLNTVRTHT 838 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KLD +R +A+ A R G + Sbjct: 839 RNLYRKLDVASRAEAVETATRRGLL 863 >gi|303257977|ref|ZP_07343986.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|302859320|gb|EFL82402.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] Length = 220 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT RE ++L G ++ IA L ++ TV + A KL N + + Sbjct: 159 DSLTPREKEVVRLVAQGKLNKVIAADLNITEKTVQQHRSVACHKLSVRNVAELV 212 >gi|297158406|gb|ADI08118.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 202 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE L+L G + EIA ++ L+ TV YL + KL+A NR A+ A Sbjct: 138 ADNPLTPREVEVLRLVAQGAEATEIAAQVHLTAGTVRNYLTAIVTKLNARNRTDAVRIAT 197 Query: 230 RFGYI 234 G+I Sbjct: 198 EAGWI 202 >gi|296161825|ref|ZP_06844627.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295887989|gb|EFG67805.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 216 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S ++L+ RE G + IAE L LS TV+ + K N + Sbjct: 141 DTSLPHQSLSTRELEIFLRIASGDSVTVIAEHLNLSAKTVSTHKTRILEKTGLANDAALV 200 Query: 226 AKAIRFGYI 234 A+R G + Sbjct: 201 RYALRTGLL 209 >gi|289642054|ref|ZP_06474207.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508127|gb|EFD29073.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 221 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 ++ +I V+ F + LTERE L L DGY++ Sbjct: 121 LARAVEAVSRGEVIFGAHVADGVLRHF-DAAGAEQPPFPELTERERVVLCLVADGYSTAA 179 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 IA +L L+ TV YL KL+ +R +A A R G Sbjct: 180 IAGELALTTKTVRNYLSKIFAKLEVRDRAEAAVIARRAGL 219 >gi|315505622|ref|YP_004084509.1| transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412241|gb|ADU10358.1| transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 979 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 10/155 (6%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + P + +++ + + L +A + G V T+E Sbjct: 830 RNHPYPAAYSRLRQAEALLARRSRVATAGKLLHRAYAMAQSL-------GAVPLTAEIRT 882 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEK 197 +A+ + A A L T RE L +G T+ EI ++ Sbjct: 883 IASRARVALDAAPDPAPVPRQRAAAPAGPAVDELATLTAREREVLAAVAEGLTNREIGQR 942 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L +S T+ ++ KL R+QA A +R G Sbjct: 943 LFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNG 977 >gi|192359096|ref|YP_001981884.1| putative two-component response regulator [Cellvibrio japonicus Ueda107] gi|190685261|gb|ACE82939.1| putative two-component response regulator [Cellvibrio japonicus Ueda107] Length = 196 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 5/82 (6%) Query: 151 GACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++ + ++ SA+ +LT RE + G T++E+A +L ++ TV Sbjct: 108 WLGADLMRQLIRATARQLSASPLVDLSSLTCRERLVAEAVAAGKTNKEVARELEITERTV 167 Query: 206 NAYLGSATVKLDAVNRIQAIAK 227 A++G+ KL +R+Q + Sbjct: 168 KAHMGAIFEKLQVRDRLQLVLL 189 >gi|154486396|ref|ZP_02027803.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis L2-32] gi|154084259|gb|EDN83304.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis L2-32] Length = 221 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 15/179 (8%) Query: 65 PNILIETYGDDFLFHFNSGL--LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA-FP 121 + T GD+ + L ++ + E + + +RL LP GI F Sbjct: 41 YVVWTATSGDEAIERCQRNDDNLNLLVLDMSMEGLQGPAICHRIRLMDRHLPILGITSFS 100 Query: 122 V---RLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAA 171 + R + G + IE G + + ++ +S Sbjct: 101 INSYRSRLMEAGAQGLIGKEDSDQLAKAIERLCGGNVMEGFEPPALANVRIRREEETSP- 159 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + L DG EIAE+L +S +TV ++ KL+ QA+A +R Sbjct: 160 -RLTVREEQIISLCADGMLDREIAERLDISENTVRKHMQGILKKLNCKTARQAVALWVR 217 >gi|152983037|ref|YP_001352599.1| two-component response regulator [Janthinobacterium sp. Marseille] gi|151283114|gb|ABR91524.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 209 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + L+ RE QL G EIA++L +S TV+ + K+ N Q I Sbjct: 140 RARPSHELLSTREYEIFQLLVHGRGVNEIADELSISNKTVSTHKTRLMEKMKCENVSQLI 199 Query: 226 AKAIRFGYI 234 AI G + Sbjct: 200 RYAIAHGML 208 >gi|123442115|ref|YP_001006098.1| response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161393|ref|YP_004297970.1| response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089076|emb|CAL11901.1| response regulator protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605328|emb|CBY26826.1| bara-associated response regulator UvrY (= GacA = SirA) [Yersinia enterocolitica subsp. palearctica Y11] gi|325665623|gb|ADZ42267.1| response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 218 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 33/76 (43%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALGQLEPPTETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|120403052|ref|YP_952881.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] gi|119955870|gb|ABM12875.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] Length = 521 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 1/105 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + E ++ V+ + S LT RE L L G Sbjct: 415 PATSAAARLRERVREGRLDEVAV-EAVLQAAGHRARGHSPRPGGLTPREIEVLCLVARGA 473 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++EIA LG+S T ++ K+ A NRI A A+ G + Sbjct: 474 SNKEIAATLGISGKTARNHVERTYAKIGATNRIGASMFALNHGLV 518 >gi|295704765|ref|YP_003597840.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802424|gb|ADF39490.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 212 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + ++ + TERETS + L G +++EI++ L +S TV Y+ S K + Sbjct: 139 AAVERESKADMTQFTERETSIMTLIAKGLSNKEISKTLFISEGTVANYISSILSKTGLEH 198 Query: 221 RIQAIAK 227 R Q Sbjct: 199 RTQIAIY 205 >gi|229588696|ref|YP_002870815.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360562|emb|CAY47419.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 210 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 148 ERLSGREMMVLQQLARGRTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRN 207 Query: 232 GYI 234 G + Sbjct: 208 GLV 210 >gi|21229587|ref|NP_635504.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766463|ref|YP_241225.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21111059|gb|AAM39428.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571795|gb|AAY47205.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 210 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F+ + + ERE + L+L GY+++EIA L L+ TV Y+ + KL Sbjct: 135 RARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILDKLGT 194 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+ KAI I Sbjct: 195 RDRTRAVLKAITLRVI 210 >gi|21242362|ref|NP_641944.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107798|gb|AAM36480.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 237 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156 L+ RL I ++ V LA Q Sbjct: 66 DLTRRLMQRSPNSRAICIAPSDACTQSSAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 125 Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L +R++ A LT RE +QL +G ++ +IA +L LSV TV Sbjct: 126 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 185 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233 + + +KL+ + Q AI G Sbjct: 186 HRENCMLKLNIQSIAQLTRYAIAQGL 211 >gi|124268227|ref|YP_001022231.1| LuxR family DNA binding response regulator [Methylibium petroleiphilum PM1] gi|124261002|gb|ABM95996.1| DNA binding response regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 209 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 36/82 (43%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + +S A L+ERE S G T +IAE L LS TV +L Sbjct: 126 AQTAQRLAVAQIDGETSPADMLSEREFSVFIQLARGMTVAQIAETLKLSPSTVGTHLYHI 185 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL+A N+ + A+R+G I Sbjct: 186 KQKLNASNQSEITLVALRWGLI 207 >gi|258650544|ref|YP_003199700.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553769|gb|ACV76711.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 947 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 5/155 (3%) Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + LP+ Q++ + +L+ G V H V + Sbjct: 798 AAGSDSCLPVFDQAVGALADSPARLELARAEAGLGGALRRRGQAVAARPHLARAVELATA 857 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A A ++ ++ + LT E ++LA G T++ IA++ Sbjct: 858 CGADS-----VAGPAAAELRVAGGRPRQRALTGIEALTPSERRAVELAAAGRTNKAIAQE 912 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L ++ TV +L SA KL +R + A R G Sbjct: 913 LFVTPKTVEVHLSSAYRKLGVTSRGELAALWARVG 947 >gi|156975022|ref|YP_001445929.1| response regulator [Vibrio harveyi ATCC BAA-1116] gi|269959627|ref|ZP_06174007.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3] gi|156526616|gb|ABU71702.1| hypothetical protein VIBHAR_02748 [Vibrio harveyi ATCC BAA-1116] gi|269835550|gb|EEZ89629.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3] Length = 214 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + ++L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFSPASENPFKDLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGML 209 >gi|217971684|ref|YP_002356435.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217496819|gb|ACK45012.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 200 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + F+++S LTERE L G T+++I+E + LS+ T+ Sbjct: 111 ALVQAIEKAQRESQAAFEQQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170 Query: 206 NAYLGSATVKLDAVNRIQAI 225 + KL+ N + + Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190 >gi|163119694|ref|YP_081082.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|145903205|gb|AAU25444.2| two-component response regulator [Bacillus licheniformis ATCC 14580] Length = 212 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I+ ++ ++ E + +L TERE + L G +++EI+++L +S T Sbjct: 122 IVMQDIILDKIKSNLAEHKEAEPKIDESLFTERELGIMALIARGLSNKEISKELFISEGT 181 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 + Y+ S K +R Q Sbjct: 182 IANYISSILGKTGLEHRTQIAIY 204 >gi|84394223|ref|ZP_00992951.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] gi|86148831|ref|ZP_01067096.1| response regulator [Vibrio sp. MED222] gi|148982309|ref|ZP_01816707.1| response regulator [Vibrionales bacterium SWAT-3] gi|218709938|ref|YP_002417559.1| response regulator [Vibrio splendidus LGP32] gi|84375137|gb|EAP92056.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] gi|85833382|gb|EAQ51575.1| response regulator [Vibrio sp. MED222] gi|145960543|gb|EDK25902.1| response regulator [Vibrionales bacterium SWAT-3] gi|218322957|emb|CAV19134.1| Similar to transcriptional regulator, LuxR family [Vibrio splendidus LGP32] Length = 214 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 ISGDVELTHLAIRHGML 209 >gi|307941454|ref|ZP_07656809.1| transcriptional regulatory protein FixJ [Roseibium sp. TrichSKD4] gi|307775062|gb|EFO34268.1| transcriptional regulatory protein FixJ [Roseibium sp. TrichSKD4] Length = 198 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 27/57 (47%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT RET LQ +G +++E KLG+S TV + KL A N + Sbjct: 138 ADLLTRRETEVLQEITEGASNKEAGRKLGISPRTVEVHRARIMEKLGARNAADLVRI 194 >gi|319424538|gb|ADV52612.1| regulatory protein LuxR [Shewanella putrefaciens 200] Length = 248 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 17/240 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +++ L + I +K F+ + + N + Sbjct: 10 ANTASTLKEVIQAITAALKLHGFSGFWFQGVPHCAYENYHFPKETNLFSQASLRKP-NAS 68 Query: 71 TYGDDFLFHFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 + L + +++S RL A + F Sbjct: 69 VASSPVVAELQRFYLSQVAANDFNFGFSLDTSKSYMYRLSCDKGDKASLLFSKHHIQTVL 128 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---------------AARNL 174 + + A I+ +H + ++ L K + + L Sbjct: 129 SWPVTCHSNRHWAGRFILLSHLSDSDILLTGLSATLKEAQNKLFECNKPLFNPFLQSSLL 188 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L + +G ++EI+ +L +S+ V ++ S K A NR I A ++ I Sbjct: 189 KDNARDILLMVANGLQNDEISTQLPISIRGVEYHMESMRRKFGATNRANLIHLAHQYELI 248 >gi|121591834|ref|ZP_01679014.1| transcriptional regulator, LuxR family protein [Vibrio cholerae 2740-80] gi|121546302|gb|EAX56587.1| transcriptional regulator, LuxR family protein [Vibrio cholerae 2740-80] Length = 158 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 77 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 136 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 137 INGDVELTHLAIRHGIL 153 >gi|308371945|ref|ZP_07426771.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu004] gi|308373119|ref|ZP_07431080.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu005] gi|308334997|gb|EFP23848.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu004] gi|308338804|gb|EFP27655.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu005] gi|323720175|gb|EGB29278.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length = 1124 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1055 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1114 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1115 LVQEAAQH 1122 >gi|269138681|ref|YP_003295382.1| two-component response regulator, hexose phosphate transport system regulatory protein [Edwardsiella tarda EIB202] gi|267984342|gb|ACY84171.1| two-component response regulator, hexose phosphate transport system regulatory protein [Edwardsiella tarda EIB202] gi|304558688|gb|ADM41352.1| Transcriptional regulatory protein UhpA [Edwardsiella tarda FL6-60] Length = 209 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 11/159 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140 + + E+ L RL F I + G + ++ Sbjct: 48 VSVAVLDIAMPDENGLSLLKRLRAKRPGFRAIILSIYDTPAFVKSALDAGASGYLTKRCG 107 Query: 141 LAN--EVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195 + + + + D L + AA L T RE L G + + IA Sbjct: 108 PEELVQAVRSVSMGGHYLCADALRALRGGEPAAEALKILTPREREIFALLVKGDSVKRIA 167 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV+ + + KL + I + A+ + Sbjct: 168 FALDLSHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 206 >gi|326201001|ref|ZP_08190873.1| transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] gi|325988569|gb|EGD49393.1| transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] Length = 256 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNL 174 + P+ G + S + L E+II YQV + + KR + Sbjct: 132 FSVPICFRNRIIGSIAVASTGIPLKKELIIITELLAYQVTNEVEVAGQGMAKRLVSQMKF 191 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +E++ L+L G T + +A G+S++TV + KLD N I A+ KA+++ I Sbjct: 192 SEKQLLVLKLLAKGMTEKAVAIDSGISINTVRYHKKIIFRKLDTGNVIDAVVKALKYNLI 251 >gi|206562092|ref|YP_002232855.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038132|emb|CAR54080.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 230 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 32/78 (41%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L A L+ RE ++L G + EIAEKL S T++ SA KL Sbjct: 137 MDRILRNTGSVGGKAPALSVREVEVIRLFASGLSVNEIAEKLNRSKKTISTQKSSAMQKL 196 Query: 217 DAVNRIQAIAKAIRFGYI 234 + + AI G + Sbjct: 197 GIERDVDLVRYAIACGLV 214 >gi|188592229|ref|YP_001796827.1| response regulator receiver, luxr chey family [Cupriavidus taiwanensis LMG 19424] gi|170938603|emb|CAP63590.1| putative response regulator receiver, luxR cheY family [Cupriavidus taiwanensis LMG 19424] Length = 219 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 14/142 (9%) Query: 106 VRLEGGLLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACY-- 154 + L+ L G+ P+ G+ + + + +++A A Sbjct: 76 LDLQARLGQL-GVHIPIIFMTGYGDIAMTVAAMKAGAEDFMPKPFRDQDLLDAVAAALEK 134 Query: 155 -QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + L + + R+LT RE + LA G +++IA ++G+S TV + G A Sbjct: 135 DRGRREGLRQLEALHACYRSLTPREGEVMGLAVSGLLNKQIAAEIGISEVTVKIHRGQAM 194 Query: 214 VKLDAVNRIQAIAKAIRFGYIC 235 K+ A + + A + G IC Sbjct: 195 RKMKARTFAELVLMAQQLG-IC 215 >gi|170692899|ref|ZP_02884061.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170142555|gb|EDT10721.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 240 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L+ RE L G +++EIA L +S TV ++ KL +R+QA Sbjct: 169 SEPEPALSIREQEILTYIARGASNKEIARALAISETTVKIHVQHILRKLKLTSRVQAAVY 228 Query: 228 A 228 A Sbjct: 229 A 229 >gi|117617851|ref|YP_857301.1| DNA-binding transcriptional activator UhpA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559258|gb|ABK36206.1| transcriptional regulatory protein UhpA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 196 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACY 154 L + A + V + L+ + +I A Sbjct: 58 PDQSGLDLLKRLPSGL-AVVMLSVHDSPALIEQALQAGAKGFLSKRCSPDELIAAVRTAA 116 Query: 155 Q--VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K ++ LT RE QL G + IAE+LGLS TV+ + + Sbjct: 117 HGGCYLTPDIAHKLACNSQDPLTNREREVAQLLARGLEVKAIAEQLGLSPKTVHVHRANL 176 Query: 213 TVKLDAVNRIQAIAK 227 KL N ++ + Sbjct: 177 MDKLKVSNNVELAHR 191 >gi|317507621|ref|ZP_07965334.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254098|gb|EFV13455.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 218 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 2/98 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + + + + +++ + L + S L+ +E + L L G+G Sbjct: 108 GMELVAAVRAVGSGKSLLD--NRAAAALMHRLRTKAQGHSPLDALSAQERTLLDLIGEGL 165 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+ +IA ++ L+ TV Y+ KLD R QA Sbjct: 166 TNRQIAGRMFLAEKTVKNYVSRLLAKLDVERRTQAAVL 203 >gi|302551208|ref|ZP_07303550.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468826|gb|EFL31919.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 231 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A + ++ R LT RE L L +G ++ +I ++ L TV + Sbjct: 136 ASRTLLHSHPGTEAAVDEEAARVRLLTPRERDVLVLVAEGLSNADIGARIHLGAGTVKDH 195 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL +R+QA A R G + Sbjct: 196 VSAILTKLRVTSRVQAALLAQRAGLL 221 >gi|184200360|ref|YP_001854567.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183580590|dbj|BAG29061.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 203 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGYVI 133 +G LP+ + E + + + R+ + G Sbjct: 43 ALAGELPVDVALLDIEMPGLTGLEATERIVAAGRGTRCLMVTTFDRPGYLRRAFDAGASG 102 Query: 134 FTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 F + I A +V+ L K + LT RE L+ A G ++ Sbjct: 103 FVVKDTPAAELAEAIRKVHAGLRVVDPALA-EKSLLAGPNPLTPREQDVLREASHGASAG 161 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +I L LS TV +L SA K NR +A A A R G++ Sbjct: 162 QIGRALHLSAGTVRNHLSSAIGKTGTANRTEAAAVAARNGWL 203 >gi|157376272|ref|YP_001474872.1| two component LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318646|gb|ABV37744.1| two component transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 220 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 SS +L+ R+ L + DG +++IA LGLS T+ A+ + +KL R Q Sbjct: 141 ADSMSSKIMSLSPRQHRILMMFADGMLNKQIAYDLGLSEATIKAHASAIFLKLGVHTRTQ 200 Query: 224 AIA 226 A+ Sbjct: 201 AVI 203 >gi|254254353|ref|ZP_04947670.1| regulatory protein LuxR [Burkholderia dolosa AUO158] gi|124898998|gb|EAY70841.1| regulatory protein LuxR [Burkholderia dolosa AUO158] Length = 277 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 12/224 (5%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + H +I L+ +L + D Sbjct: 53 FAQCHARLRQIGFSTLGYGAYEMIGRRILCAHLLRDL--APATFMQPYIEGMLYESDPRF 110 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVI 133 P+ W+ + E + SG V G L +G+ F + + Sbjct: 111 AQVRQSGFPVAWRLDEIEAAAQRSGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAV 170 Query: 134 FTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGD 187 + + + VI A V L + R + R L + + L+ Sbjct: 171 NVTSETHGTEWIDDRVIGGALAVSLAVHRVALPFLEARIARMRGFVLGDEQQQVLERLVH 230 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G + +EIA L S+H V ++ S + NR Q A R Sbjct: 231 GLSDQEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274 >gi|119964358|ref|YP_946356.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119951217|gb|ABM10128.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 227 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT++E +QL G G ++ E+A +L ++ T+ A + KL +R+Q + A+ Sbjct: 153 DALTKKELEVIQLLGRGMSNREMAAELFVTESTIKARFVNVMEKLGVRDRVQILVAAVEG 212 Query: 232 GYI 234 G + Sbjct: 213 GLV 215 >gi|104782605|ref|YP_609103.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95111592|emb|CAK16313.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 270 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 23/181 (12%) Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D F L + + + + F + LG Sbjct: 73 YANGLYLLDPFYISSRERPLTGLVRLADVAPEQFQQTDYYRLYFTHNVVADEVQFNLALG 132 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFK--KRSSAARNL------ 174 + + + I + ++ L + +R+ A L Sbjct: 133 DGRTLCLSLGG-RSRFDAQAIAQLELVRPWLIGLLRQRLHFEQLPERAPAKPALGLAQGR 191 Query: 175 -----------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 T RE ++L G++++E A KL LS TV + + KLD ++ + Sbjct: 192 DEARRQLESVLTARELDVVRLILSGHSNKETAIKLQLSAETVKVHRRNVYRKLDVNSQSE 251 Query: 224 A 224 Sbjct: 252 L 252 >gi|29829419|ref|NP_824053.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606526|dbj|BAC70588.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 213 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G G ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 152 DVLTRREREVLSCLGRGMSNAEIAARLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQEL 211 Query: 232 G 232 G Sbjct: 212 G 212 >gi|2765824|emb|CAB09344.1| SsrB [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 193 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +GYT+ I+EKL +S+ TV + + KL + + A R Sbjct: 131 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 190 Query: 234 I 234 I Sbjct: 191 I 191 >gi|86134557|ref|ZP_01053139.1| two-component system response regulator, LuxR family [Polaribacter sp. MED152] gi|85821420|gb|EAQ42567.1| two-component system response regulator, LuxR family [Polaribacter sp. MED152] Length = 217 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L G I++ L +S TV ++ + KL ++++A+ KA + Sbjct: 156 KLTKRETEILIQLSKGLNYNSISDNLIISPSTVRKHIENIYKKLQVHSKMEAVMKAQKRN 215 Query: 233 YI 234 I Sbjct: 216 LI 217 >gi|304321036|ref|YP_003854679.1| two-component response regulator [Parvularcula bermudensis HTCC2503] gi|303299938|gb|ADM09537.1| two-component response regulator [Parvularcula bermudensis HTCC2503] Length = 200 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + LT RE +G T++E+A +LG S T+ + KL N Sbjct: 126 LAPMPEDWPQLDALTPREREVALALNEGLTNKEVARRLGCSPRTIEVHRARVFHKLGVSN 185 Query: 221 RIQAIA 226 + Sbjct: 186 IAGLVR 191 >gi|113971949|ref|YP_735742.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|117922250|ref|YP_871442.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|113886633|gb|ABI40685.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] gi|117614582|gb|ABK50036.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 198 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L ++E L+ A +G ++ EIAE L ++ TV YL A KL+A NR Sbjct: 126 ELAIMAIGDVDPLNDKERRALRFASEGKSTAEIAEMLFIAEGTVRNYLSEAIAKLNASNR 185 Query: 222 IQAIAKAIRFGYI 234 I A A + G++ Sbjct: 186 IDAARIAKQKGWL 198 >gi|150005395|ref|YP_001300139.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254883802|ref|ZP_05256512.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294777176|ref|ZP_06742633.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|319643530|ref|ZP_07998153.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|149933819|gb|ABR40517.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254836595|gb|EET16904.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294449045|gb|EFG17588.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|317384935|gb|EFV65891.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 203 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++E AEKL LS+HTV + + KL + AI Sbjct: 132 EALSQREKEIICCVVRGMTNKETAEKLFLSIHTVITHRRNIARKLQIHSPAGLTIYAIVN 191 Query: 232 GYI 234 + Sbjct: 192 KLV 194 >gi|194367747|ref|YP_002030357.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194350551|gb|ACF53674.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 221 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT ++ LQ+ G G +++IA L +S T+ A++ + KL NR QA+ A Sbjct: 146 RLRELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|312888670|ref|ZP_07748238.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311298837|gb|EFQ75938.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 313 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT E +Q G +++EIA+ + +S +TV +L + K++ +R I Sbjct: 251 LTRTEILIIQYIYKGKSNKEIADLMSISENTVKKHLQNVYRKVNVKSRAALI 302 >gi|302038390|ref|YP_003798712.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300606454|emb|CBK42787.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 215 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L++RE L L G T +IAE + LSV T++ Y K++ N + A+ Sbjct: 150 AHERLSDREYEVLCLIASGQTVSDIAESIHLSVTTISTYRARILDKMNLKNNAELTRYAL 209 Query: 230 RFGYI 234 + G + Sbjct: 210 QHGLV 214 >gi|258655289|ref|YP_003204445.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558514|gb|ACV81456.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Nakamurella multipartita DSM 44233] Length = 884 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +LTERE L+ + EIA+ L +SV+TV A+L S KL NR + Sbjct: 814 AHSPAGQVEHLTERELIVLKYLPTMLKAGEIADDLFVSVNTVKAHLRSMYRKLGVSNRRE 873 Query: 224 AIAKAIRFGYI 234 A+ +A G + Sbjct: 874 AVERARSQGLL 884 >gi|88797997|ref|ZP_01113584.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] gi|88779194|gb|EAR10382.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] Length = 303 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 29/58 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE+ L +G T+ E AE L +S TVN +L KL NR A A++ Sbjct: 238 LTGRESEVLYWIANGKTNRETAEILAMSPRTVNKHLEQIFSKLGVDNRTSAAGVALKL 295 >gi|328885874|emb|CCA59113.1| two-component regulator [Streptomyces venezuelae ATCC 10712] Length = 221 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%) Query: 162 ELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L +R A + L+ RE L+L +G +++ I +GLS TV ++L Sbjct: 141 RLGHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIAR 200 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R +A A+R G I Sbjct: 201 KLGTGDRAGMVAVALRTGII 220 >gi|326794785|ref|YP_004312605.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326545549|gb|ADZ90769.1| transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 208 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L++RE G T+++IA ++ + TV A+L + KL+ +R+ Sbjct: 150 DELSDRERDVALFIAKGLTNKQIAGEMDIVERTVKAHLTAIFKKLNVKDRLALALL 205 >gi|218528264|ref|YP_002419080.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520567|gb|ACK81152.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 500 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 5/103 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYT 190 +E + V+ +A + VI + K LT RE L G T Sbjct: 383 TELIAAIETVMADASWFSHGVIEKLALMRKPPPPGKPAALVEKLTRRERDLLLGICKGAT 442 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA +LGLS+ TV +L S K+ R + A G Sbjct: 443 DSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERGI 485 >gi|86739704|ref|YP_480104.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566566|gb|ABD10375.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 814 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 62/228 (27%), Gaps = 12/228 (5%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ + + + R F + + + ++ Sbjct: 547 REEQDAAATVFAECVALTERFGECCFRSFALCGLGLAAWQ----LGELEQAMEHHAAAIS 602 Query: 68 LIETYGDDF-LFHFNSGLLPIIWQSIQEETVI---ESSGQLSVRLEGGLLPFAGIAFPVR 123 L + D + ++ + + ++G++ + F +F R Sbjct: 603 LKYAFHDHVGIAVALEQQAWVMASAGRHHESAVLLGAAGRIWRETGASIAVFGLASFHHR 662 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARN---LTERET 179 + LA ++ + A LT RE Sbjct: 663 CEASLRRVLDQRKLERALAQGAELDLDEAVAAATQGTGTPVAHPVVPAGEPEVPLTPRER 722 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L G +++EIA L ++ T ++ KL +R Q +A Sbjct: 723 QVADLVARGLSNKEIASYLVIAQRTAEGHVERILGKLGFTSRAQIVAW 770 >gi|148252117|ref|YP_001236702.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404290|gb|ABQ32796.1| putative Transcriptional regulatory protein, luxR family [Bradyrhizobium sp. BTAi1] Length = 206 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++LT RE L+L G++++E A ++G+S T ++ A KL A N + + A+ Sbjct: 144 KSLTPREREVLELISAGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELVRAAL 201 >gi|328883545|emb|CCA56784.1| two component transcriptional regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 210 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE +++ G T ++IA +LG+S HTV+ Y+ KL N+ + + A+ +G+ Sbjct: 150 LSVRERQVIRMLTHGLTHDQIARRLGISRHTVDTYVKRMRSKLGLGNKAELVRAAMAYGW 209 >gi|319648166|ref|ZP_08002383.1| YfiK protein [Bacillus sp. BT1B_CT2] gi|317389801|gb|EFV70611.1| YfiK protein [Bacillus sp. BT1B_CT2] Length = 230 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I+ ++ ++ E + +L TERE + L G +++EI+++L +S T Sbjct: 140 IVMQDIILDKIKSNLAEHKEAEPKIDESLFTERELGIMALIARGLSNKEISKELFISEGT 199 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 + Y+ S K +R Q Sbjct: 200 IANYISSILGKTGLEHRTQIAIY 222 >gi|317491608|ref|ZP_07950044.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921155|gb|EFV42478.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 218 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + S +L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLTPQTDSPFASLSERELQIMLMLTKGSKVVEISEQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|314991314|ref|ZP_07856793.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594087|gb|EFR72932.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] Length = 209 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +ERE + ++ G ++EIA+ L LS TV Y+ KLD +R Q + Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 207 >gi|257885374|ref|ZP_05665027.1| regulatory protein [Enterococcus faecium 1,231,501] gi|257821230|gb|EEV48360.1| regulatory protein [Enterococcus faecium 1,231,501] Length = 209 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +ERE + ++ G ++EIA+ L LS TV Y+ KLD +R Q + Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 207 >gi|297563287|ref|YP_003682261.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847735|gb|ADH69755.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 225 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 A E+++ A G + A L+ERE +L G G T+ E+A L + Sbjct: 132 PAAELLVAALGEGPSTVPAADPPRPPGHGEAPRLSEREEEVARLVGTGATNREVARALFI 191 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + T ++ S KL +R + Sbjct: 192 TEGTAKNHVTSILRKLGLRDRTRLALWVRER 222 >gi|167570250|ref|ZP_02363124.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 83 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + A L+ RE ++L G T +IA + G S+ TV+ + +A KL + + Sbjct: 12 LAMRAADAPPQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDV 71 Query: 223 QAIAKAIRFGYI 234 A G + Sbjct: 72 DLFMYASENGLV 83 >gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis] gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis] Length = 213 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 75/221 (33%), Gaps = 23/221 (10%) Query: 14 LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + L L+ + + + + SAL+ +R++ L + + D Sbjct: 4 VDDTPDNLALLSDALDEVGYMVLVALDGLSALNRIQRRRPDLILLDAMMPGLDGFETCQR 63 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + +P++ T + S + + P+ Sbjct: 64 IKAD-----AATADIPVL-----FMTALTDSEHVVKGFAA--GGIDYVTKPINTE----- 106 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDG 188 + L I++ A Q L E SA LTERE L+ G Sbjct: 107 -EVLARVASHLRTARILQTARAASQAQPLTLNDEPAYATLSARFQLTEREVEVLRWVACG 165 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 T+ +I + LGLS TVN +L VKL R A + A+ Sbjct: 166 KTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVAL 206 >gi|218753069|ref|ZP_03531865.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|253799593|ref|YP_003032594.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254550372|ref|ZP_05140819.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297633912|ref|ZP_06951692.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297730900|ref|ZP_06960018.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|313658233|ref|ZP_07815113.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|253321096|gb|ACT25699.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|328459339|gb|AEB04762.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 870 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 801 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 860 Query: 224 AIAKAIRF 231 + +A + Sbjct: 861 LVQEAAQH 868 >gi|69249446|ref|ZP_00604982.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|257880327|ref|ZP_05659980.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257894240|ref|ZP_05673893.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260562369|ref|ZP_05832883.1| regulatory protein [Enterococcus faecium C68] gi|293553074|ref|ZP_06673716.1| DNA-binding response regulator [Enterococcus faecium E1039] gi|293559445|ref|ZP_06675983.1| DNA-binding response regulator [Enterococcus faecium E1162] gi|293568332|ref|ZP_06679655.1| DNA-binding response regulator [Enterococcus faecium E1071] gi|294618821|ref|ZP_06698347.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|314937987|ref|ZP_07845298.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314941587|ref|ZP_07848471.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314948427|ref|ZP_07851815.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314951384|ref|ZP_07854436.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314995348|ref|ZP_07860454.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68194157|gb|EAN08690.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|257814555|gb|EEV43313.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257830619|gb|EEV57226.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260073293|gb|EEW61634.1| regulatory protein [Enterococcus faecium C68] gi|291588941|gb|EFF20766.1| DNA-binding response regulator [Enterococcus faecium E1071] gi|291594944|gb|EFF26295.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|291602783|gb|EFF32993.1| DNA-binding response regulator [Enterococcus faecium E1039] gi|291606600|gb|EFF35996.1| DNA-binding response regulator [Enterococcus faecium E1162] gi|313590441|gb|EFR69286.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313596442|gb|EFR75287.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313599607|gb|EFR78450.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313642662|gb|EFS07242.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313645152|gb|EFS09732.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 209 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +ERE + ++ G ++EIA+ L LS TV Y+ KLD +R Q + Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 207 >gi|271967438|ref|YP_003341634.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510613|gb|ACZ88891.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 5/127 (3%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKK 166 L L AG G V ++ +L+ A + Sbjct: 91 LRAMSLGAAGFLLKDTPPEDLIGLVRVAADGHTVLSP----AATRRLLTASAGHGAARDR 146 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + +LT+RE L G+G ++ +IA +L LS T+ +Y+ VKL NR QA Sbjct: 147 ALARIADLTDREVEVLTCLGEGLSNAKIARRLYLSEATIKSYVSRMLVKLGFSNRTQAGL 206 Query: 227 KAIRFGY 233 A G Sbjct: 207 LASEAGL 213 >gi|15893467|ref|NP_346816.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023003|gb|AAK78156.1|AE007530_7 Response regulator, CheY-like receiver domain and HTH DNA-binding domain [Clostridium acetobutylicum ATCC 824] gi|325507583|gb|ADZ19219.1| Response regulator, CheY-like receiver domain protein and HTH DNA-binding domain protein [Clostridium acetobutylicum EA 2018] Length = 213 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE G ++ IAE L L+ T+ Y+ KL+ NR + I Sbjct: 155 LTPREMDVANHVLKGKSNRAIAEALFLTEGTIKNYVSKILEKLELGNRSELILY 208 >gi|319648196|ref|ZP_08002413.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2] gi|317389831|gb|EFV70641.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2] Length = 213 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L L S +LT+ E LQ G T++EIA L +S V +L KL Sbjct: 133 LLQKLRLDSDLS-VDEHLTDTELDILQKVASGKTNKEIAADLQMSTRNVEYHLSKIYKKL 191 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R A+ K I Sbjct: 192 KVTSRYCAVKKGTMLNLI 209 >gi|284042085|ref|YP_003392425.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946306|gb|ADB49050.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 216 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G + L + R+ +T+RE L L Sbjct: 99 AGATGYLLKDAPRDELLRAVSAAARGEAVLAPSVATRLLGRVRAPDGEPVTDREREVLAL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E A +L +S T+ +L KL +R A+A A G + Sbjct: 159 VAQGATNREAARRLFISEATIKTHLLHVYAKLGVNDRAAAVAAAYDRGLL 208 >gi|238062942|ref|ZP_04607651.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884753|gb|EEP73581.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 217 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 QVI R++ AR LT+RE L L G G ++ +IA +L L TV Sbjct: 129 ITAQVIGRLRATGLGRAAEARAKVQQLTDRERDVLALVGAGLSNAQIARRLHLVEGTVKG 188 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + +L NR+QA A G + Sbjct: 189 HVSTILARLGLANRVQAAVLAHEAGLV 215 >gi|281420857|ref|ZP_06251856.1| transcriptional regulator GerE, LuxR family [Prevotella copri DSM 18205] gi|281405149|gb|EFB35829.1| transcriptional regulator GerE, LuxR family [Prevotella copri DSM 18205] Length = 265 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + + L G +S+ I+ +L +S +TV+ + + K+ A N +A KA + G Sbjct: 201 LSEREITIMNLVSQGLSSKAISIRLNISKNTVDRHRQNIIKKMQAANMAEACHKAKQLGI 260 >gi|167032249|ref|YP_001667480.1| two component LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166858737|gb|ABY97144.1| two component transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 216 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT ++ L + +G +++IA +L +S T+ A++ + KL R QA + Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210 >gi|114764255|ref|ZP_01443483.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114543203|gb|EAU46220.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 234 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT ++ L L +G +++IA L ++ TV A++ + KL +R QA Sbjct: 155 DDALARLATLTNQQARILSLICEGKLNKQIAYDLTIAETTVKAHVTAIMRKLGVHSRTQA 214 Query: 225 IAKAIRF 231 + A Sbjct: 215 VLIAQEA 221 >gi|52082321|ref|YP_081112.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787713|ref|YP_093542.1| hypothetical protein BLi04036 [Bacillus licheniformis ATCC 14580] gi|52005532|gb|AAU25474.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52350215|gb|AAU42849.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 210 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L L S +LT+ E LQ G T++EIA L +S V +L KL Sbjct: 130 LLQKLRLDSDLS-VDEHLTDTELDILQKVASGKTNKEIAADLQMSTRNVEYHLSKIYKKL 188 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R A+ K I Sbjct: 189 KVTSRYCAVKKGTMLNLI 206 >gi|34498416|ref|NP_902631.1| transcriptional regulatory, LuxR family [Chromobacterium violaceum ATCC 12472] gi|34104270|gb|AAQ60629.1| probable transcriptional regulatory, LuxR family [Chromobacterium violaceum ATCC 12472] Length = 206 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 118 IAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI-----TDFLELFKKRSSA 170 I + +F+ + + A V +K S+A Sbjct: 79 IMLTAHGDVPHAVAALKLGALDFIEKPFDDVHLLERAAAAVALDEQNRQRHGHQRKVSAA 138 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE +QL G +++IAE+L +S+ TV + K+ + ++ Sbjct: 139 LALLTEREREVMQLILAGKLNKQIAEELSISMKTVEVHRSRVFEKMGVKSAVELA 193 >gi|332991848|gb|AEF01903.1| DNA-binding response regulator, LuxR family protein [Alteromonas sp. SN2] Length = 201 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ +E+ L+LA DG + +IA+KL LS TV YL A KLDA NR+ A A + G Sbjct: 140 PLSAKESKALKLAADGLKTHDIAQKLFLSEGTVRNYLSEAIAKLDATNRVDAARIAKQKG 199 Query: 233 YI 234 ++ Sbjct: 200 WL 201 >gi|299140322|ref|ZP_07033486.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298597710|gb|EFI53884.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 200 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L DG+ ++++A+ LG++ TVN ++ + KL A +R A+A A+R Sbjct: 135 GEHLTVRELEVLALIRDGHANKQVADILGIAETTVNFHISNLVKKLKANDRTHAMAIAVR 194 Query: 231 FGYI 234 G++ Sbjct: 195 RGFL 198 >gi|238028033|ref|YP_002912264.1| Two component transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237877227|gb|ACR29560.1| Two component transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 212 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 P+ + K G + F E E+ + ++ + ++R++ LT R Sbjct: 97 VPMAVSTMKKGAMDFI-EKPFDEAELRSLVERMLNKARSESKTVQEQRAASERLSKLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207 >gi|254524890|ref|ZP_05136945.1| response regulator (Global antibiotic and cyanide control protein, LuxR/UhpA family) [Stenotrophomonas sp. SKA14] gi|219722481|gb|EED41006.1| response regulator (Global antibiotic and cyanide control protein, LuxR/UhpA family) [Stenotrophomonas sp. SKA14] Length = 215 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCL 182 G E L +V + + L + S +L+ RE Sbjct: 98 GAAGYIGKGCDAQELLRAVRDVAAGRRYLGTSISQNLALSTVEGNGSPFDSLSPRELEVA 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G E+IA +L LS TVN + K+ + I A ++G + Sbjct: 158 LLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLV 209 >gi|254417726|ref|ZP_05031450.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3] gi|196183903|gb|EDX78879.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3] Length = 209 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LTERE + L+ +G ++EIA +L +SV TV A + KLD +R +A+ A Sbjct: 142 SAGDRLTEREIAILKAISEGRANKEIARRLHVSVDTVKADMKRIFSKLDVTDRTRAVIVA 201 Query: 229 IRFG 232 I+ G Sbjct: 202 IQRG 205 >gi|163855189|ref|YP_001629487.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258917|emb|CAP41216.1| transcriptional regulator, LuxR-family [Bordetella petrii] Length = 186 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R S +LT RE +G T +E A +LG+S TV + G KL+A N + Sbjct: 116 QHRPSKTASLTPREQEIAGFIVNGLTCKETASELGISHRTVEVHRGRLMRKLNAKNTAEL 175 Query: 225 IAK 227 +++ Sbjct: 176 VSR 178 >gi|88807300|ref|ZP_01122812.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] gi|88788514|gb|EAR19669.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] Length = 228 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 37/97 (38%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E + A + + L + + LT RE L G + EIAE Sbjct: 130 EDRKPLEAAVLAVMGDHSYRSPSLRSDELPYLSCPRLTPREYEVLDRLARGMSDREIAED 189 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L ++ T Y L+ NR+QA+ K +R G + Sbjct: 190 LIVTEETARTYTKRLLRTLEVNNRVQAVLKGMRCGMV 226 >gi|87118437|ref|ZP_01074336.1| Response regulator [Marinomonas sp. MED121] gi|86166071|gb|EAQ67337.1| Response regulator [Marinomonas sp. MED121] Length = 207 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ L + G +++IA +L + TV ++ KL +NR QA Sbjct: 143 QLTPQQFRVLTMIAKGDLNKQIAYQLNVKESTVKTHISEIFKKLGIINRTQAALF 197 >gi|330466590|ref|YP_004404333.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809561|gb|AEB43733.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 212 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 17/218 (7%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 L + + + + A + + + + I L Sbjct: 7 LDDHEVVRRGLADLLHASG-DIEVVGESGSAQEAARRIPALRPDVAILDARLPDGNGIDV 65 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + +S + +I S +++ + + +R + Sbjct: 66 CRDIRAVDSSIKGLILTSYEDDEALF--------AAIMAGASGYVLKQIRGTDLVDAVRR 117 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + +L +V+ ++ ++LTE+E L+ +G T+ E Sbjct: 118 VAAGQSLLDP-------AITTRVLDRIRSGVEQ-PRELQSLTEQERRILEYVAEGLTNRE 169 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 IA K+ L+ TV Y+ S KL R QA A R Sbjct: 170 IAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207 >gi|326802259|ref|YP_004320078.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326553023|gb|ADZ81408.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 214 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 4/106 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLE-LFKKRS---SAARNLTERETSCLQLAGDG 188 S L ++ A ++ ++RS + LT RE + L +G Sbjct: 109 WLISTIKDLQHDGAPMAPIIARKLFNFIYRKCDERRSVKINRDYQLTLREKTILNYLVNG 168 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + I +LG+S T+ +++ KL+ + + +AKAI+ + Sbjct: 169 LSYKMIGHELGISYETIRSHMKKVYRKLEVSSLTEVVAKAIKQEIV 214 >gi|325275199|ref|ZP_08141166.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51] gi|324099686|gb|EGB97565.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51] Length = 207 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 34/81 (41%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + L+ RE + LQ G +++EIA+ + LS TV+ Y Sbjct: 126 NQALHAARGRGTGSEVDMVNRLSAREMTVLQQLARGRSNKEIADSMYLSNKTVSTYKSRL 185 Query: 213 TVKLDAVNRIQAIAKAIRFGY 233 +KL+A + + I A R G Sbjct: 186 LLKLNARSLVDLIELAQRQGL 206 >gi|320325633|gb|EFW81695.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea str. B076] Length = 208 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|262191075|ref|ZP_06049282.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] gi|262033051|gb|EEY51582.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] Length = 265 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 25 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 82 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 141 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 142 PRAFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRIWVEKAIQSFGAQRL 201 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIAE L +S TV + +L + + Sbjct: 202 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYTQLHVSSLSEL 251 >gi|194365304|ref|YP_002027914.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348108|gb|ACF51231.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 215 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCL 182 G E L +V + + L + S +L+ RE Sbjct: 98 GAAGYIGKGCDAQELLRAVRDVAGGRRYLGTSIAQNLALSTVEGNGSPFDSLSPRELEVA 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G E+IA +L LS TVN + K+ + I A ++G + Sbjct: 158 LLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLV 209 >gi|329939589|ref|ZP_08288890.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301159|gb|EGG45054.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 204 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 12/161 (7%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 + + E + + + ++ + + + L Sbjct: 47 RAHAVDVALLDIEMPGATGIEAAAQVHREMPDVKLVVLTTFGRPGYLRAAMEAGADAFLV 106 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA---------ARNLTERETSCLQLAGDGYTSEE 193 + Q + L + A LT+RE L+ A DG T+ E Sbjct: 107 KD---APAAQLAQAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGATNAE 163 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A L LS TV YL +A KL A NR +A+ A G++ Sbjct: 164 LATALHLSQGTVRNYLSTAIQKLTARNRTEAVRIAREKGWL 204 >gi|329851875|ref|ZP_08266556.1| response regulator [Asticcacaulis biprosthecum C19] gi|328839724|gb|EGF89297.1| response regulator [Asticcacaulis biprosthecum C19] Length = 212 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 34/88 (38%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 I + + I D LT RE L L G + + A LGL+ TV Sbjct: 122 IPALSPSIARRIVDHFRSTAVAHQPEATLTTRELDVLGLISKGLRNADAAHALGLAESTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++ S KL R +A +A R G Sbjct: 182 ASHIKSIYSKLGITTRAEAAIRAQRMGL 209 >gi|209695582|ref|YP_002263511.1| response regulator [Aliivibrio salmonicida LFI1238] gi|208009534|emb|CAQ79826.1| response regulator VarA [Aliivibrio salmonicida LFI1238] Length = 214 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + + L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFTPDSENPFKELSERELQIMIMITKGEKVTDISEQLNLSPKTVNSYRYRLFSKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 ISGDVELTHLAIRHGIL 209 >gi|1825466|gb|AAD12185.1| utilizing regulatory protein tutB [Thauera aromatica] Length = 218 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 24/169 (14%) Query: 90 QSIQEETVIESSGQLSVRLEG---------GLLPFAGIAFPVR--LGFHKNGYVIFTSEF 138 E E+ L + + L G+ P+ G + + Sbjct: 41 SEFLEHARSEACACLVLDVRMPRMSGFDLQHALSKNGVDIPIIFITGHGDIPMAVRAIKS 100 Query: 139 LMLA-------NEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDG 188 L E ++EA + + E K LT+RE L G Sbjct: 101 GALEFLPKPFRAEELLEAINRALNIDQEAREYKAELDKILKKYEGLTDREKEVFPLIAQG 160 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF---GYI 234 +++IA LG++ T+ + + T K+ + + G I Sbjct: 161 LLNKQIAGYLGITEVTIKVHRHNITRKMGVRTLANLVRLYEKLKNAGLI 209 >gi|148546374|ref|YP_001266476.1| two component LuxR family transcriptional regulator [Pseudomonas putida F1] gi|148510432|gb|ABQ77292.1| two component transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 236 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + L+ RE + LQ G +++EIA+ + LS TV+ Y Sbjct: 155 NQALHASRGRGAGSETDMVNRLSAREMTVLQQLARGRSNKEIADSMYLSNKTVSTYKSRL 214 Query: 213 TVKLDAVNRIQAIAKAIRFGY 233 +KL+A + + I A R G Sbjct: 215 LLKLNARSLVDLIELAQRQGL 235 >gi|333023482|ref|ZP_08451546.1| putative two-component response regulator [Streptomyces sp. Tu6071] gi|332743334|gb|EGJ73775.1| putative two-component response regulator [Streptomyces sp. Tu6071] Length = 227 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%) Query: 140 MLANEVIIEAHGACYQ--------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 + +++EA A + + L + L+ RE + G T+ Sbjct: 118 DASPALLVEAVRAAARGDALVSPSLTLRLLRGLAPQDPEPTVLSAREQEITEHVAQGRTN 177 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EI LGLS+ +V YL KL NR++ A A G + Sbjct: 178 QEIGTALGLSLSSVKTYLDRVRTKLGLRNRVEIAAWAWERGLV 220 >gi|329114860|ref|ZP_08243616.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001] gi|326695757|gb|EGE47442.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001] Length = 299 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE L G T+ +IAE L +S TVN +L A VK+ NR A A+ ++ Sbjct: 238 NLTAREAEVLFWISKGKTNRDIAEILSISHRTVNKHLEQAYVKIGVENRASATARVLQAL 297 Query: 233 YI 234 + Sbjct: 298 LV 299 >gi|317475733|ref|ZP_07934992.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316908116|gb|EFV29811.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 70 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE LQ G + EIA LG+S +TV + K A N I + KA+ G++ Sbjct: 8 TKREQDVLQAVAKGLNTHEIAHLLGISENTVETFRKKLLSKFGAKNAIDLVVKAVSQGWV 67 >gi|303238259|ref|ZP_07324795.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302594305|gb|EFL64017.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 215 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K + + +L ERE +++ +G +++EIA KL LS + KLD +R Sbjct: 143 SAEKNDNPISIDLKEREVEIIRMIAEGMSNKEIASKLCLSFGRTKNIISEILAKLDLSDR 202 Query: 222 IQAIAKAIRFGYI 234 Q + A + I Sbjct: 203 NQLASFAFKNKLI 215 >gi|256827483|ref|YP_003151442.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583626|gb|ACU94760.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 215 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + R+ LT+RE ++ +G + E+A+ L +S TV ++ + KL NR Sbjct: 142 SADRLRAETFSVLTDREYEVVEAVAEGLDNAEVAQTLYMSEGTVRNHISTILAKLGLKNR 201 Query: 222 IQAIAKAIRFGY 233 Q + R Sbjct: 202 TQIAVRYYRASL 213 >gi|167578168|ref|ZP_02371042.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] Length = 212 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 49/188 (26%), Gaps = 13/188 (6%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQL 104 + EL D S ++ + +E + Sbjct: 23 EPADFELFGMTAAMHRAYVS-RYRPLDPLHPARCASQPGAVVTLASQLPDERR--DASSY 79 Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLE 162 + +R G + I H V L Sbjct: 80 WTGFLRRHGVADVVEVLLRDGGAPVAAFSLLRLAGGGRYSAAEIAALHAVQPVVEVALLP 139 Query: 163 LFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +R + LT RE +L DG +++ IA L L TV +L KL Sbjct: 140 PLRVVRGIRRIACDVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLG 199 Query: 218 AVNRIQAI 225 NR + + Sbjct: 200 VSNRTELV 207 >gi|153811961|ref|ZP_01964629.1| hypothetical protein RUMOBE_02354 [Ruminococcus obeum ATCC 29174] gi|149831860|gb|EDM86946.1| hypothetical protein RUMOBE_02354 [Ruminococcus obeum ATCC 29174] Length = 206 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E+E ++L +GY+++EIA ++ L TV YL + KL +R Q + Sbjct: 150 EKEKEIIRLVANGYSNKEIAAEMYLGEGTVRNYLSAILDKLQLRDRTQVAVFYYKH 205 >gi|148822580|ref|YP_001287334.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|289554850|ref|ZP_06444060.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289761519|ref|ZP_06520897.1| regulatory protein [Mycobacterium tuberculosis GM 1503] gi|148721107|gb|ABR05732.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|289439482|gb|EFD21975.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289709025|gb|EFD73041.1| regulatory protein [Mycobacterium tuberculosis GM 1503] Length = 887 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 818 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 877 Query: 224 AIAKAIRF 231 + +A + Sbjct: 878 LVQEAAQH 885 >gi|71277777|ref|YP_268662.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71143517|gb|AAZ23990.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 219 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE LQ G +++IA L +S TV +++ S KL A NR++ + Sbjct: 154 LTRRELIVLQHLTKGEANKQIAFNLHISETTVKSHVSSILKKLGASNRVKVV 205 >gi|54023878|ref|YP_118120.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015386|dbj|BAD56756.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 207 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + L + +LTE+E L L G+G T+ +IA ++ L+ TV Sbjct: 122 RSLLDNRAAETLEARLRGAEG---PLADLTEQERKLLALLGEGLTNRQIAARMFLAEKTV 178 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 Y+ KL R QA A R Sbjct: 179 KNYVSRLLAKLGMERRTQAAVLATRL 204 >gi|88812156|ref|ZP_01127408.1| Bacterial regulatory protein, LuxR family:Response regulator receiver [Nitrococcus mobilis Nb-231] gi|88790660|gb|EAR21775.1| Bacterial regulatory protein, LuxR family:Response regulator receiver [Nitrococcus mobilis Nb-231] Length = 224 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT R++ LQL +G +++ IA +L + TV ++ K A+NR A A R Sbjct: 148 QGLTPRQSEVLQLLREGKSNKIIAYELKMQESTVKVHVRQIMKKFKAINRTHAAFLANRL 207 >gi|319901236|ref|YP_004160964.1| transcriptional regulator [Bacteroides helcogenes P 36-108] gi|319416267|gb|ADV43378.1| transcriptional regulator [Bacteroides helcogenes P 36-108] Length = 205 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + G T++ IA+KL LS+HTV + + KL + AI Sbjct: 136 LSQREREIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 195 Query: 234 I 234 + Sbjct: 196 V 196 >gi|312961834|ref|ZP_07776332.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens WH6] gi|311284093|gb|EFQ62676.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens WH6] Length = 221 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 160 FLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L + A LT ++ L+ G ++++IA L ++ TV A++ + KL Sbjct: 139 HRRLNENPGFAPELLQALTRKQLLVLERMTKGESNKQIAYTLEIAETTVKAHVSAILRKL 198 Query: 217 DAVNRIQAIAKA 228 + NR+QAI A Sbjct: 199 NVHNRVQAILSA 210 >gi|289674631|ref|ZP_06495521.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae FF5] Length = 84 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 11 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 70 Query: 224 AIAKAIRF 231 A + Sbjct: 71 AALLLQQL 78 >gi|253998442|ref|YP_003050505.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200518|ref|YP_004039176.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985121|gb|ACT49978.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312439834|gb|ADQ83940.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 214 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGF---------HKNGYVIFTSEFLMLANEVIIEAHGAC 153 + R+ + F + GYV T F L V+ A G Sbjct: 68 EAMRRILARYRTARVLIFSMHENAAFAMQTLKSGARGYVAKTGSFDELVKAVVEVARGKS 127 Query: 154 ----YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 L+ L+ RE +L +G +EEIAE L +S TV Y Sbjct: 128 YISTSIAQKIALQTVIGDGDLISQLSPREFEVFRLFAEGKNAEEIAEVLKISQKTVANYH 187 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL N ++ + AI+ G I Sbjct: 188 TLVKQKLGLSNPVEMVRFAIKHGLI 212 >gi|239820082|ref|YP_002947267.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239804935|gb|ACS22001.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 208 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 8/124 (6%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSA 170 G + GY++ L+ V A V L+ Sbjct: 85 QSTGWQIRRAVDAGVRGYLLHDCSAEELSEAVRCVAEGRRYLSCPVADQLLDNLSSAVP- 143 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T RE L+L G +++I +LG+ TV A++ + KL R+ AI +A R Sbjct: 144 ----TARELEVLRLMAQGLANKDIGRRLGIGEGTVKAHVKAILRKLRKPTRVAAIGEAFR 199 Query: 231 FGYI 234 G + Sbjct: 200 CGLL 203 >gi|157369529|ref|YP_001477518.1| two component LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157321293|gb|ABV40390.1| two component transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 213 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 1/102 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQL 184 + G F + L V+ ++ + ++ +L T +E L L Sbjct: 105 AYAAGANGFVHKGSRLEQLVLAIETVLAGELSFPAAAMAEETQPTEGSLLTPKELQILGL 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G ++ +IAE L +S TV+ + + K A N ++ +A Sbjct: 165 LSKGLSNLQIAEMLSISNKTVSTHKKNILRKTGASNLLELVA 206 >gi|71279910|ref|YP_266947.1| LuxR family DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71145650|gb|AAZ26123.1| DNA-binding response regulator, LuxR family [Colwellia psychrerythraea 34H] Length = 219 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +LT+++ L + G +++IA L +S T+ A+ + KLD NR Q Sbjct: 142 DGDIAERVASLTQQQYRILMMFAQGMLNKQIAYDLNVSEATIKAHATAIFRKLDVRNRTQ 201 Query: 224 AIA 226 A+ Sbjct: 202 AVI 204 >gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] Length = 222 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 8/105 (7%) Query: 138 FLMLANEVIIEAHGACY--QVITDFLELFKKR------SSAARNLTERETSCLQLAGDGY 189 +L +IEA + +++ KR S+ +LTERE L L +G Sbjct: 117 RSLLERSQLIEAEWRSRINEPLSNHTSSSHKRHHFHSLSTTNIHLTEREQQVLNLLTEGL 176 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +I + L LS TV Y+ S K D+ NR + + A+ I Sbjct: 177 SNIKIGDSLHLSSRTVEKYVSSLLRKTDSSNRAELVRFALENDLI 221 >gi|261209256|ref|ZP_05923648.1| regulatory protein [Enterococcus faecium TC 6] gi|289566005|ref|ZP_06446443.1| regulatory protein [Enterococcus faecium D344SRF] gi|294616191|ref|ZP_06695988.1| DNA-binding response regulator [Enterococcus faecium E1636] gi|260076802|gb|EEW64537.1| regulatory protein [Enterococcus faecium TC 6] gi|289162203|gb|EFD10065.1| regulatory protein [Enterococcus faecium D344SRF] gi|291590946|gb|EFF22658.1| DNA-binding response regulator [Enterococcus faecium E1636] Length = 209 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +ERE + ++ G ++EIA+ L LS TV Y+ KLD +R Q + Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 207 >gi|238920173|ref|YP_002933688.1| response regulator UvrY [Edwardsiella ictaluri 93-146] gi|238869742|gb|ACR69453.1| response regulator UvrY [Edwardsiella ictaluri 93-146] Length = 218 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + S +L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLTPQGDSPFGSLSERELQIMLMITKGSKVTEISEQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|77457409|ref|YP_346914.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381412|gb|ABA72925.1| putative regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 216 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q + ++++ +LT ++ L + +G +++IA +L +S T+ A++ + Sbjct: 132 QAFEAVSVSDEAKAASDGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAI 191 Query: 213 TVKLDAVNRIQAIAKAIRF 231 KL+ R QA + Sbjct: 192 FRKLNVRTRTQAALLLQQL 210 >gi|88799009|ref|ZP_01114590.1| putative transcriptional regulator, LuxR family protein [Reinekea sp. MED297] gi|88778236|gb|EAR09430.1| putative transcriptional regulator, LuxR family protein [Reinekea sp. MED297] Length = 218 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT ++ L L GY +++IA +L + TV ++ KL NR QA Sbjct: 156 SLTPKQQHVLSLISRGYLNKQIAYELDIKETTVKTHVSEIFRKLGIFNRTQAAIF 210 >gi|226943848|ref|YP_002798921.1| Two-component response regulator, LuxR family [Azotobacter vinelandii DJ] gi|226718775|gb|ACO77946.1| Two-component response regulator, LuxR family [Azotobacter vinelandii DJ] Length = 211 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 29/65 (44%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE L G EI E++ LSV TV+ Y KL N + I AI Sbjct: 145 PHLRLTDREMQIFNLIVTGARLTEIGERILLSVKTVSTYKTRIMEKLGVNNNAELIQYAI 204 Query: 230 RFGYI 234 R G + Sbjct: 205 RHGIL 209 >gi|306842522|ref|ZP_07475173.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2] gi|306287378|gb|EFM58858.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2] Length = 245 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229 >gi|296169886|ref|ZP_06851498.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895442|gb|EFG75144.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1109 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIA 195 +KR ++ +LT E ++L +G ++EI Sbjct: 1014 SDFDTNWAEGAALSTEQAIAYAQRGRGERKRPASGWESLTPMEHDVVRLVREGLGNKEIG 1073 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L +S TV +L KL +R++ I Sbjct: 1074 ARLFVSPRTVQTHLTHVYAKLGISSRVELI 1103 >gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 222 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L +G ++ +I + L LS TV Y+ S K D+ NR + + A+ Sbjct: 161 LTEREQQVLNLLTEGLSNIKIGDSLHLSSRTVEKYVSSLLRKTDSSNRAELVRFALENDL 220 Query: 234 I 234 I Sbjct: 221 I 221 >gi|294636769|ref|ZP_06715108.1| response regulator UvrY [Edwardsiella tarda ATCC 23685] gi|291090028|gb|EFE22589.1| response regulator UvrY [Edwardsiella tarda ATCC 23685] Length = 218 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + S L+ERE + + +G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALSQLAPQSESPFGCLSERELQIMLMITNGSKVTEISEQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|229530306|ref|ZP_04419694.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] gi|229332079|gb|EEN97567.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] Length = 267 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 27 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTLRELLFQRYLTHAYLD-DPFYS 83 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 84 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 203 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIAE L +S TV + +L + + Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 253 >gi|229009028|ref|ZP_04166367.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228752198|gb|EEM01887.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 201 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++ +G T+ EI + L L+ TV YL S+ KL+A +R QAI A G Sbjct: 140 PLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|227504946|ref|ZP_03934995.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198455|gb|EEI78503.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 225 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D L + +LT RE L+ G G+++ EI+E++ +S+ TV ++G K + Sbjct: 142 DTLSISGTDRRVLESLTAREQEILEAIGMGWSNTEISERMFISMPTVKTHVGRVLAKTSS 201 Query: 219 VNRIQAIAKAIRFGYI 234 +R+ A A R G + Sbjct: 202 RDRVHAALFAYRTGVV 217 >gi|157377199|ref|YP_001475799.1| two component LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319573|gb|ABV38671.1| two component transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 209 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE L L G T+++I+E L LS+ T+ + KL+ N + Sbjct: 139 LSEREQEVLNLLTKGMTNKQISEALFLSLRTIEVHRAKVMKKLEVHNMAELAKY 192 >gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 237 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + F + + ++ L + N T RE S LQL +G ++EI Sbjct: 138 AARFADTDMGQMAKQITEIRSLLAQADAL-PNQDPVQHNFTPREASVLQLVAEGLMNKEI 196 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L S+ V Y+ +K + +R + + A++ + Sbjct: 197 ARQLETSIRNVEKYVSRLFIKTETSSRTELVRYALQHHLV 236 >gi|52787684|ref|YP_093513.1| YfiK [Bacillus licheniformis ATCC 14580] gi|52350186|gb|AAU42820.1| YfiK [Bacillus licheniformis ATCC 14580] Length = 230 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 I+ ++ ++ E + +L TERE + L G +++EI+++L +S T Sbjct: 140 IVMQDIILDKIKSNLAEHKEAEPKIDESLFTERELGIMALIARGLSNKEISKELFISEGT 199 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 + Y+ S K +R Q Sbjct: 200 IANYISSILGKTGLEHRTQIAIY 222 >gi|294338655|emb|CAZ86984.1| VsrD [Thiomonas sp. 3As] Length = 208 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +++ + L++RE +G + ++A++L +S TV+ + KL Sbjct: 130 LANYMNEGEAAEEPHARLSDREMQVFMRLVEGKSVNQVADELHISCKTVSTHKTRLMHKL 189 Query: 217 DAVNRIQAIAKAIRFGYI 234 N + A+ G + Sbjct: 190 ALDNDADLVRYAMHQGIV 207 >gi|238764987|ref|ZP_04625924.1| Response regulator uvrY [Yersinia kristensenii ATCC 33638] gi|238696756|gb|EEP89536.1| Response regulator uvrY [Yersinia kristensenii ATCC 33638] Length = 218 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 33/76 (43%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 133 MALGQLEPPTETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 193 ISGDVELTHLAIRHGL 208 >gi|302536696|ref|ZP_07289038.1| two-component system response regulator [Streptomyces sp. C] gi|302445591|gb|EFL17407.1| two-component system response regulator [Streptomyces sp. C] Length = 208 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 4/168 (2%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 GD+ + S + + I+ + +R L + R G+ + Sbjct: 41 ARGDEVVAAARSHDVNVALLDIEMPGMTGIEAAAQLRAALPALKIVVLTTFGRPGYLRRA 100 Query: 131 YVIFTSEFL--MLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 S FL + +A Q + D + A LT+RE L+ A Sbjct: 101 MEAGASAFLVKDAPAAQLADAVRKVLAGQRVIDPTLAAAALAEGANPLTDREREVLRAAE 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E+A +LGLS TV YL +A KL A NR +A+ A G++ Sbjct: 161 FGATNAELASRLGLSQGTVRNYLSTAIQKLAARNRAEAVRVAREKGWL 208 >gi|298492499|ref|YP_003722676.1| LuxR family GAF modulated transcriptional regulator ['Nostoc azollae' 0708] gi|298234417|gb|ADI65553.1| GAF modulated transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 256 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 59/216 (27%), Gaps = 30/216 (13%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + I + +++ + ++ L + I + + + Sbjct: 58 QALMDTIGDHFGVQHWGISFLDDELLTEIKTPDI------PAVCLEANPVGRY-----VV 106 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 +I + + P+ G + F + Sbjct: 107 ERHAPTHEQLILSPEDWKNFCTRHE-------------HIMTGPIVCDGRLVGTLNFARD 153 Query: 138 FLMLANE--VIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTS 191 + + C + L K S+ LT RE +L G T+ Sbjct: 154 PGSAPFNGNDLSDLSALCIHLSAKLATLRAKPKILSSAVNSLLTARELEIAELVAQGLTN 213 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 EI KL ++ ++V L KL R + +AK Sbjct: 214 GEIGAKLWITQNSVKQALKRMFRKLGVSARAEMVAK 249 >gi|254466822|ref|ZP_05080233.1| transcriptional regulator, LuxR family, putative [Rhodobacterales bacterium Y4I] gi|206687730|gb|EDZ48212.1| transcriptional regulator, LuxR family, putative [Rhodobacterales bacterium Y4I] Length = 242 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 64/211 (30%), Gaps = 14/211 (6%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP-IIWQSIQEE 95 +N A + ++L+ + D F+ P + E Sbjct: 31 ALNVAEVEIKTRRLLWLRSSMTRAFLAEYAQQKFYEVDQFVSGIGLPFYPSLHVTGTLER 90 Query: 96 TVIESSGQLSVR------------LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 S L G + V + +F + Sbjct: 91 ATAPSQRHLDFNWTTWDMGYTLGYAMRFAGACPGTSKTVVFCAGEKASEFTAEQFEKIRQ 150 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 A C + F + S L+ RE L L GY + IA +LG++ Sbjct: 151 AGTAVAAFICAPGMGQEYPAFAAQES-GNALSSREKQMLALLAAGYLNTRIAHELGIAEV 209 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV L SA KL A R +A+A A+R G + Sbjct: 210 TVRKTLLSARRKLGAKTREEALAIAVRSGLL 240 >gi|209886246|ref|YP_002290103.1| transcriptional regulatory protein FixJ [Oligotropha carboxidovorans OM5] gi|209874442|gb|ACI94238.1| transcriptional regulatory protein FixJ [Oligotropha carboxidovorans OM5] Length = 205 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + +S +L+ RE ++ G +++ IA +S T+ Y + K+ A + Sbjct: 131 AVTADIASRIASLSPRERQVMEGLVAGLSNKLIARNYEISPRTIEVYRANVMTKMQASSV 190 Query: 222 IQAIAKAIRFGYI 234 + + AIR G + Sbjct: 191 SELVRLAIRGGLL 203 >gi|218778430|ref|YP_002429748.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218759814|gb|ACL02280.1| two component transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 557 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 14/125 (11%) Query: 120 FPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------ 172 F VR L G + +S NE+I H + +K + Sbjct: 437 FSVRMLRHGAAGCLSHSSS----VNELIAAVHKVAAGRKHVSNRIAEKLAFEVDIYAPKP 492 Query: 173 ---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L++RE + + +G T +EIA +L LS T+ Y K+ Q + + Sbjct: 493 FLYKLSDRERQVMFMIAEGKTMKEIASELRLSYKTIATYRTRVFEKMHMRTDAQIVRYVV 552 Query: 230 RFGYI 234 G + Sbjct: 553 SKGLL 557 >gi|118578818|ref|YP_900068.1| two component LuxR family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501528|gb|ABK98010.1| two component transcriptional regulator, LuxR family [Pelobacter propionicus DSM 2379] Length = 240 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + LT RE L G+T+ +IAE L +SV TV ++ KL+A R+ + Sbjct: 173 RVPPRKPLTRREAEILGYIAQGHTNRQIAELLFVSVRTVESHRARLQGKLNAHCRMDLVR 232 Query: 227 KAIRF 231 A Sbjct: 233 HAANL 237 >gi|330957744|gb|EGH58004.1| LuxR response regulator receiver [Pseudomonas syringae pv. maculicola str. ES4326] Length = 208 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G T++EIA+ + LS TV+ Y +KL+A + + I A R Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|304408345|ref|ZP_07389992.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304342634|gb|EFM08481.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 222 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE + LQ G +++EIA + +S + L KL+ +R +AI +A + G I Sbjct: 158 QREQAILQEIAQGKSNKEIAAMMFMSQRMIEYNLSKIFEKLNVSSRSEAITEAKKHGLI 216 >gi|262172422|ref|ZP_06040100.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] gi|261893498|gb|EEY39484.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] Length = 265 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 25 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 82 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 141 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 142 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRIWVEQAIQSFGAQRL 201 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIAE L +S TV + +L + + Sbjct: 202 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 251 >gi|209965864|ref|YP_002298779.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW] gi|209959330|gb|ACI99966.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW] Length = 205 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + + T RE L G +++EIA L L TV ++ KL A NR QA Sbjct: 135 DSQLAGGASFTRREREVLDFLLKGCSNKEIARALSLEEVTVKLHVRGLCRKLGAKNRTQA 194 Query: 225 IAKAIRFGY 233 +A+ G Sbjct: 195 AMRAVEMGL 203 >gi|254420099|ref|ZP_05033823.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196186276|gb|EDX81252.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 203 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +LT + L+ G +++IA LG+S T+ A+L S KL NR Sbjct: 132 ADDDLPARVASLTPSQLRILEGLKAGRLNKQIAFDLGVSEATIKAHLTSVFRKLGVHNRT 191 Query: 223 QAIAKAIRF 231 QA+ A + Sbjct: 192 QAVILAKQM 200 >gi|54025254|ref|YP_119496.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016762|dbj|BAD58132.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 872 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +R +LT E L+ G T+ +IA LG+SV+TV +L KL +R Sbjct: 800 HLAVRRHLTGHSLTGTELRVLKHLPTGRTTSQIAADLGVSVNTVKTHLRGIYGKLGIASR 859 Query: 222 IQAIAKAIRFGYI 234 A+ +A + G + Sbjct: 860 ADALTEARQRGLL 872 >gi|23577991|ref|NP_702938.1| putative transcriptional regulatory protein [Corynebacterium efficiens YS-314] gi|259506139|ref|ZP_05749041.1| two component response regulator [Corynebacterium efficiens YS-314] gi|23494817|dbj|BAC19780.1| putative transcriptional regulatory protein [Corynebacterium efficiens YS-314] gi|259166260|gb|EEW50814.1| two component response regulator [Corynebacterium efficiens YS-314] Length = 225 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+ T+ EIA L + TV Y+ K+ +R+ A Sbjct: 161 EALTPRELEVLKRVAQAETNAEIANYLHIGSETVKTYVSRLISKIGVRDRVGLAVWAHTS 220 Query: 232 GYI 234 G + Sbjct: 221 GIV 223 >gi|299140982|ref|ZP_07034120.1| transcriptional regulator, LuxR family domain protein [Prevotella oris C735] gi|298577948|gb|EFI49816.1| transcriptional regulator, LuxR family domain protein [Prevotella oris C735] Length = 201 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ A+ L++RE L L GY ++EI +L + + TV ++ + KL + Sbjct: 128 PRALKAKLLSDREIEVLSLIAQGYINKEIGNQLNIGLTTVISHRKNIVEKLGMKSVSALT 187 Query: 226 AKAIRFGYI 234 A+ GY+ Sbjct: 188 IYAVMHGYV 196 >gi|281424279|ref|ZP_06255192.1| transcriptional regulator, LuxR family protein [Prevotella oris F0302] gi|281401548|gb|EFB32379.1| transcriptional regulator, LuxR family protein [Prevotella oris F0302] Length = 214 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ A+ L++RE L L GY ++EI +L + + TV ++ + KL + Sbjct: 141 PRALKAKLLSDREIEVLSLIAQGYINKEIGNQLNIGLTTVISHRKNIVEKLGMKSVSALT 200 Query: 226 AKAIRFGYI 234 A+ GY+ Sbjct: 201 IYAVMHGYV 209 >gi|119898962|ref|YP_934175.1| two-component response regulator [Azoarcus sp. BH72] gi|119671375|emb|CAL95288.1| two-component response regulator [Azoarcus sp. BH72] Length = 215 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 12/136 (8%) Query: 108 LEGGLLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQV-- 156 + G P+ G G + + + +++A + Sbjct: 74 ELQQAILARGWTLPIVFITGHGDVGLAVQAMKCGASDFLEKPFHDQALLDAVTMAIRRGT 133 Query: 157 -ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L + ++A L+ RE +L G ++ +A LG+S TV+ + K Sbjct: 134 EARAELARREDAAAALARLSPREREVARLVAQGLPNKRVARALGISEKTVHVHRQHVMEK 193 Query: 216 LDAVNRIQAIAKAIRF 231 + + +R Sbjct: 194 AGVASAAELARLMLRA 209 >gi|113866807|ref|YP_725296.1| response regulator [Ralstonia eutropha H16] gi|113525583|emb|CAJ91928.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 216 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++++ + LT RE Q+ +G E+A L LS TV+ + Sbjct: 128 AIADKLLSQARQPD--AMLPHARLTARELQVFQMLAEGLGINEVAAALSLSAKTVSTHKA 185 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + K+D + + AIR G + Sbjct: 186 NILGKMDIASTAGLVHYAIRHGLL 209 >gi|77459476|ref|YP_348983.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383479|gb|ABA74992.1| putative luxR family response regulator [Pseudomonas fluorescens Pf0-1] Length = 201 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT R+ L+L G T++EIA +L +S TV ++ S L+ +R A K Sbjct: 142 ALTPRQQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLRVLNVPSRAAAAVK 196 >gi|298250633|ref|ZP_06974437.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548637|gb|EFH82504.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1034 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 2/125 (1%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSS 169 FAG A + L + ++ S + + ++ + + S Sbjct: 910 AGTFAGNAQRLFLDAGEQMAILLRSLLPQVHEQSLLAYIRTLLSAFPTQEQSGTQTLASP 969 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ +E L+L ++ +IA +L +SV+TV + S KL R A A Sbjct: 970 LVEPLSPQEMRVLRLLVQQRSNPDIANELIVSVNTVRTQVQSIYAKLGVHTRHAASEVAR 1029 Query: 230 RFGYI 234 + Sbjct: 1030 ELHLV 1034 >gi|256785041|ref|ZP_05523472.1| regulatory protein [Streptomyces lividans TK24] gi|289768934|ref|ZP_06528312.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] gi|289699133|gb|EFD66562.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] Length = 166 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 37/99 (37%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + A + + A LT RE L+L DG T+ +I Sbjct: 56 ARPLSDAVAVLGRRARLTLGRAAGPVPASGPADPADALGLTGRERDVLRLVSDGRTNRQI 115 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 AE+L +S T + ++ + KL R +A A A R Sbjct: 116 AEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRLAL 154 >gi|238793130|ref|ZP_04636758.1| two-component response regulator [Yersinia intermedia ATCC 29909] gi|238727503|gb|EEQ19029.1| two-component response regulator [Yersinia intermedia ATCC 29909] Length = 144 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196 + +V+IE + L + ++++ L+ RE L G TS++IA+ Sbjct: 43 PIDADVLIETISMALEQHEQALAIHSQQAAYQQLISQLSAREQEVAALIIQGETSKQIAQ 102 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L LS TV A+ + KL+ + I Sbjct: 103 RLSLSPRTVEAHRANIFAKLEVNSLASLIH 132 >gi|262393869|ref|YP_003285723.1| BarA-associated response regulator UvrY [Vibrio sp. Ex25] gi|262337463|gb|ACY51258.1| BarA-associated response regulator UvrY [Vibrio sp. Ex25] Length = 188 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + ++L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 107 MALSQFSPASENPFKDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 166 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 167 INGDVELTHLAIRHGML 183 >gi|120436463|ref|YP_862149.1| two-component system response regulator [Gramella forsetii KT0803] gi|117578613|emb|CAL67082.1| two-component system response regulator [Gramella forsetii KT0803] Length = 210 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L A T + IA ++ LS TV Y S KL +R+ + AI+ Sbjct: 146 EELTAREMEFLNHACSELTYKAIAGEMNLSPKTVENYRESLFSKLRVKSRVGLVIFAIKE 205 Query: 232 GYIC 235 G IC Sbjct: 206 G-IC 208 >gi|28898719|ref|NP_798324.1| response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260877284|ref|ZP_05889639.1| response regulator UvrY [Vibrio parahaemolyticus AN-5034] gi|269967056|ref|ZP_06181124.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|28806937|dbj|BAC60208.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|269828315|gb|EEZ82581.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|308090311|gb|EFO40006.1| response regulator UvrY [Vibrio parahaemolyticus AN-5034] Length = 214 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + ++L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFSPASENPFKDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGML 209 >gi|269795006|ref|YP_003314461.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097191|gb|ACZ21627.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 233 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR +G + ++ T E + + LT RE Sbjct: 114 VRRVADGDGVLAPEVTRRVIRALAAAAPASTTPPASTPPSEPEPAKVTRVAGLTPRERDV 173 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L G G T+++IA +L +S T ++ +KL +R+QA A G Sbjct: 174 LAALGRGLTNQQIATELFVSAATAKTHVSRVLMKLGVTSRVQAALVARDAG 224 >gi|215402638|ref|ZP_03414819.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis 02_1987] gi|289744570|ref|ZP_06503948.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis 02_1987] gi|289685098|gb|EFD52586.1| nitrate/nitrite response transcriptional regulatory protein narL [Mycobacterium tuberculosis 02_1987] Length = 216 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 13/160 (8%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138 + Q++ + LP + G+++ S Sbjct: 56 DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR 115 Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + V+ A G ++ E+ ++ + A L+ RE L + I Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACRQSIPAI 175 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A + ++ TV ++ KL +R A+A+A+R + Sbjct: 176 AAERYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215 >gi|114045946|ref|YP_736496.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113887388|gb|ABI41439.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 202 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + F+++S + LTERE L G T+++I+E + LS+ T+ Sbjct: 111 ALVQAIEKAHRESQANFEQQSLQHKFAQLTEREQQVLTHVIQGMTNKQISEAMYLSLRTI 170 Query: 206 NAYLGSATVKLDAVNRIQAI 225 + KL+ N + + Sbjct: 171 EVHRAKIMKKLEVSNMAELV 190 >gi|330895505|gb|EGH27816.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] gi|330981863|gb|EGH79966.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 77 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +++ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ Sbjct: 1 MNTMDMNFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60 Query: 218 AVNRIQAIAKAIRFGY 233 N+ A +A G Sbjct: 61 VCNKTAAAVQAALSGM 76 >gi|330826405|ref|YP_004389708.1| LuxR family ATP-dependent transcriptional regulator [Alicycliphilus denitrificans K601] gi|329311777|gb|AEB86192.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Alicycliphilus denitrificans K601] Length = 911 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 29/185 (15%) Query: 77 LFHFNSGLLPIIWQSIQ----------EETVIESSGQLSVRLEGGLLPFAG--------- 117 L H N+ + W + E + S + L L AG Sbjct: 725 LAHANTLIAAQDWSAAAEALANALPLVESAKLGRSRIEIMALRALALERAGRNGKPLLLE 784 Query: 118 ---IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSS 169 +A L ++++ E H Q+ L ++ R+ Sbjct: 785 AMNLALTFSLSRTFVDAHPALADWVRRTAEEDGAGHRI--QIARTARPLPERAAGAPRAV 842 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT +E L+ +++EIA+ + + TV +L + KLDA R + +A Sbjct: 843 PSMVLTPKEREVLEHLARNLSNKEIAQAMEVGEETVKWHLKNLFGKLDAGTRKHVVRRAQ 902 Query: 230 RFGYI 234 G + Sbjct: 903 LLGLL 907 >gi|255745617|ref|ZP_05419565.1| BarA-associated response regulator UvrY [Vibrio cholera CIRS 101] gi|261210630|ref|ZP_05924922.1| BarA-associated response regulator UvrY [Vibrio sp. RC341] gi|262159108|ref|ZP_06030220.1| BarA-associated response regulator UvrY [Vibrio cholerae INDRE 91/1] gi|262169466|ref|ZP_06037158.1| BarA-associated response regulator UvrY [Vibrio cholerae RC27] gi|262190260|ref|ZP_06048532.1| BarA-associated response regulator UvrY [Vibrio cholerae CT 5369-93] gi|262402434|ref|ZP_06078995.1| BarA-associated response regulator UvrY [Vibrio sp. RC586] gi|255736692|gb|EET92089.1| BarA-associated response regulator UvrY [Vibrio cholera CIRS 101] gi|260840115|gb|EEX66695.1| BarA-associated response regulator UvrY [Vibrio sp. RC341] gi|262022279|gb|EEY40988.1| BarA-associated response regulator UvrY [Vibrio cholerae RC27] gi|262029293|gb|EEY47945.1| BarA-associated response regulator UvrY [Vibrio cholerae INDRE 91/1] gi|262033855|gb|EEY52323.1| BarA-associated response regulator UvrY [Vibrio cholerae CT 5369-93] gi|262351216|gb|EEZ00349.1| BarA-associated response regulator UvrY [Vibrio sp. RC586] Length = 188 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 107 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 166 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 167 INGDVELTHLAIRHGIL 183 >gi|302337063|ref|YP_003802269.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634248|gb|ADK79675.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 216 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 152 ACYQVITDFL-ELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 Q+ L EL K++S A NLT RE ++ GYT EIA++ +S TV Sbjct: 126 ISPQIARTLLGELRKEKSPADHVDYNLTPRELDVVKGIIAGYTYREIADRYNISGSTVKK 185 Query: 208 YLGSATVKLDAVNRIQ 223 ++ KL+ +R++ Sbjct: 186 HILHIYKKLNVSSRVE 201 >gi|284028795|ref|YP_003378726.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808088|gb|ADB29927.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 200 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ + LT+RE L+L +GY+ +IA +L L+ TV YL +A K A +R Sbjct: 128 EVSARAVIDDNPLTDRELDALRLTSEGYSVADIATRLFLAEGTVRNYLSNAMRKTQAKSR 187 Query: 222 IQAIAKAIRFGYI 234 +A A ++ Sbjct: 188 HEAARYAREHDWL 200 >gi|213966347|ref|ZP_03394528.1| regulatory protein, LuxR:Response regulator receiver [Corynebacterium amycolatum SK46] gi|213950996|gb|EEB62397.1| regulatory protein, LuxR:Response regulator receiver [Corynebacterium amycolatum SK46] Length = 217 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ R+ ++ +T+ E L L G ++ +IA++LG S T+ +L S K A Sbjct: 134 RLIKTLPSRNISSYKITQAEREVLGLICRGKSNHDIAKELGKSPGTIKKHLSSMFNKFGA 193 Query: 219 VNRIQAIAKAIRFGY 233 +R+ KAI G+ Sbjct: 194 TSRLDLALKAIDAGF 208 >gi|163803038|ref|ZP_02196924.1| response regulator [Vibrio sp. AND4] gi|159173212|gb|EDP58041.1| response regulator [Vibrio sp. AND4] Length = 214 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + ++L+ERE + + G +I+++L LS TVN+Y KLD Sbjct: 133 MALSQFSPASENPFKDLSERELQIMMMITKGQKVTDISDQLNLSPKTVNSYRYRLFSKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGML 209 >gi|186471227|ref|YP_001862545.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197536|gb|ACC75499.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 213 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 44/114 (38%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G ++ A ++E + ++ L LT R Sbjct: 96 VTQAVRAGASGYVLKDSPGAEIIRAIGAVLEGKTFFSEGLSARLIHASATRDPIERLTPR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 156 ERDILDQLAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 209 >gi|26988367|ref|NP_743792.1| LuxR family two component transcriptional regulator [Pseudomonas putida KT2440] gi|148549288|ref|YP_001269390.1| two component LuxR family transcriptional regulator [Pseudomonas putida F1] gi|24983119|gb|AAN67256.1|AE016352_9 DNA-binding response regulator [Pseudomonas putida KT2440] gi|148513346|gb|ABQ80206.1| two component transcriptional regulator, LuxR family [Pseudomonas putida F1] gi|313500198|gb|ADR61564.1| LuxR family two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 216 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT ++ L + +G +++IA +L +S T+ A++ + KL R QA + Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210 >gi|330808400|ref|YP_004352862.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376508|gb|AEA67858.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 219 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 AH Q +T + + + A NLT R+ L+L G ++ EIA L LS+ TV Sbjct: 129 AIAHTVINQALTRVQK-HQSDPARAHNLTARQLEILRLIVRGKSTREIANGLNLSIKTVE 187 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +L + + A+R I Sbjct: 188 THRAQIMKRLQIHDVAGLVLFAVREQII 215 >gi|298242216|ref|ZP_06966023.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555270|gb|EFH89134.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 768 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K ++++ L ERE L+ G + ++IA++L LS +T+ Y KL +R Q Sbjct: 1 MKGKATSPDLLNEREQEILKRLSTGLSDQQIADELFLSPNTIKWYNRQIYSKLGVKSRTQ 60 Query: 224 AIAKAIRFGYI 234 AIA G + Sbjct: 61 AIACVKDLGLL 71 >gi|298250549|ref|ZP_06974353.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548553|gb|EFH82420.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1080 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT +E L+L G ++ EIA +L +SV+T+ + + S KL NR A A Sbjct: 1015 PLYEPLTSQEQRVLRLLATGRSNPEIARELIVSVNTIRSQVQSIYRKLQVNNRHAASELA 1074 Query: 229 IRFGYI 234 + + Sbjct: 1075 RKLHLL 1080 >gi|228997588|ref|ZP_04157200.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228762140|gb|EEM11074.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 201 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++ +G T+ EI + L L+ TV YL S+ KL+A +R QAI A G Sbjct: 140 PLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKG 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|253699734|ref|YP_003020923.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251774584|gb|ACT17165.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 215 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G +S ++E+L +SV TV A+ KL A+R G+ Sbjct: 152 LTPREHDIMVLLAQGKSSRAVSEQLLISVKTVEAHRAHIMKKLGLSGMAALAKYALRAGF 211 Query: 234 I 234 I Sbjct: 212 I 212 >gi|188582813|ref|YP_001926258.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179346311|gb|ACB81723.1| two component transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 301 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 14/129 (10%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI-------TDFLELFKKRSS 169 G + P+ L ++ A + + G + + L L ++ Sbjct: 168 GSSEPLALPPSGREWLQRCLSGHGTAPLALTDGQGRAHSLSFIGRTGPEILLRLSGDPTA 227 Query: 170 AA-----RNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 A L T RE L G +S +I E LGLS TV +L KL NR Sbjct: 228 AGLERLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRT 287 Query: 223 QAIAKAIRF 231 A A A R Sbjct: 288 AASAVAARH 296 >gi|56681815|gb|AAW21508.1| nitrate/nitrite regulatory protein [Methylophaga aminisulfidivorans] Length = 226 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 11/119 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L + NGY+ + + ++++ HG A + + E ++ + Sbjct: 98 LRYGANGYLQKDTPPDEILSQLMSVLHGNVAMNAGAVTSLASHLRENKDDENNPSSAILS 157 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +TERE L G ++ IA +LG+S TV Y+ S K++ +R++ A A R Sbjct: 158 HMTERERETLFYIAKGLNNKLIARELGISDGTVKVYVKSLLRKVNLHSRLELAAWAHRN 216 >gi|158312386|ref|YP_001504894.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158107791|gb|ABW09988.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 201 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + ++ LT RE L+LA G EEIA +L LS TV YL SA KL AVNR Sbjct: 130 AAEAIAAGDSPLTPREAEVLELAAGGAPVEEIAARLSLSRGTVRNYLSSAVAKLGAVNRH 189 Query: 223 QAIAKAIRFGYI 234 +A+ A G+I Sbjct: 190 EAVQLARVRGWI 201 >gi|226945892|ref|YP_002800965.1| Response regulator, LuxR family [Azotobacter vinelandii DJ] gi|226720819|gb|ACO79990.1| Response regulator, LuxR family [Azotobacter vinelandii DJ] Length = 215 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + DG +++IA +L +S TV A++ + KL R Q Sbjct: 143 AKAASAGLASLTPQQFRVLSMVCDGLLNKQIAYELNVSEATVKAHVTAIFRKLGVRTRTQ 202 Query: 224 AIAKAIRF 231 A + Sbjct: 203 AALLLQQL 210 >gi|327479056|gb|AEA82366.1| DNA-binding response regulator CorR [Pseudomonas stutzeri DSM 4166] Length = 194 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + + +LT RE L LAG G ++ EIAE+L LS HT+ +++ + K+ A NR Sbjct: 116 RRMRQLAESKTSLTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNR 175 Query: 222 IQAI 225 +A Sbjct: 176 AEAA 179 >gi|326388234|ref|ZP_08209837.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207400|gb|EGD58214.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 194 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVI 157 S+ + I L G++ + ++ A ++E ++ Sbjct: 55 RDSFPSIPVVMVSGALDRITVREALAAGAAGFIPKSLKRAEIVEALRQVLEGEIYIPNIL 114 Query: 158 TDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + E ++R+ + LT ++ L+ +G +++IA +L +S+ TV A++ + Sbjct: 115 EEDNEDARERASILARIEALTPQQKVVLRHLVNGKLNKQIAFELDVSMTTVKAHVSAILQ 174 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL+A +R QA+ A R G+ Sbjct: 175 KLNAYSRTQAVILANRVGF 193 >gi|313498513|gb|ADR59879.1| LuxR family DNA-binding response regulator [Pseudomonas putida BIRD-1] Length = 210 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 120 FPVRLGFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 P+ + K G F ++ L+L + H + L L + R LT Sbjct: 87 VPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALEHAGLARQGDQALALVQAR---IDGLT 143 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE G + EIAE+LG+SV TV+ Y G +L A + + + AI G Sbjct: 144 PRERDVFVPLAQGLNNREIAEQLGISVKTVDLYRGRVMKRLQASSLAELVGMAIACG 200 >gi|308049926|ref|YP_003913492.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307632116|gb|ADN76418.1| two component transcriptional regulator, LuxR family [Ferrimonas balearica DSM 9799] Length = 213 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 35/79 (44%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L+ F + +L+ERE + G EI+E+L LS TVN+Y K Sbjct: 130 AQQMALKPFNPEKNPFDDLSERELQITMMVTSGQKVSEISEQLNLSPKTVNSYRYRLFEK 189 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L ++ AIR+G + Sbjct: 190 LKISGDVELTRLAIRYGMV 208 >gi|260204619|ref|ZP_05772110.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis K85] gi|289574024|ref|ZP_06454251.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289538455|gb|EFD43033.1| transcriptional regulator [Mycobacterium tuberculosis K85] Length = 1159 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1150 LVQEAAQH 1157 >gi|257882181|ref|ZP_05661834.1| regulatory protein [Enterococcus faecium 1,231,502] gi|294621968|ref|ZP_06701113.1| DNA-binding response regulator [Enterococcus faecium U0317] gi|257817839|gb|EEV45167.1| regulatory protein [Enterococcus faecium 1,231,502] gi|291598447|gb|EFF29519.1| DNA-binding response regulator [Enterococcus faecium U0317] Length = 197 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +ERE + ++ G ++EIA+ L LS TV Y+ KLD +R Q + Sbjct: 137 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 195 >gi|238064295|ref|ZP_04609004.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] gi|237886106|gb|EEP74934.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] Length = 498 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 5/137 (3%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 + E V + L G + +R + L A Sbjct: 357 ELLAEAVAVLRTSPARLELAEALHAYGRSVRLRHP-----GAALAASTEALEIARACGAE 411 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G +V + E LT E +LA G T+ +IA++L ++ TV +L Sbjct: 412 GLARRVAAELAESATPAEPPHGALTAGEWRVARLALSGRTNHQIAQELHVTPKTVETHLS 471 Query: 211 SATVKLDAVNRIQAIAK 227 S KL NR Sbjct: 472 SVYRKLGVRNRTAMARL 488 >gi|254521736|ref|ZP_05133791.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219719327|gb|EED37852.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 221 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT ++ LQ+ G G +++IA L +S T+ A++ + KL NR QA+ A Sbjct: 146 RLRELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|269977244|ref|ZP_06184217.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1] gi|269934547|gb|EEZ91108.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1] Length = 189 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K ++ + LT E Q G + +IA+ L T+ ++ S K +R + Sbjct: 117 DPKYTAGKQALTPAERDVWQEVLKGKGNAQIAKTLHSQESTIKTHMTSIMQKFQVRSRAE 176 Query: 224 AIAKAIRFGYI 234 + + + G I Sbjct: 177 LLVFSAKNGAI 187 >gi|260186297|ref|ZP_05763771.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289446953|ref|ZP_06436697.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289419911|gb|EFD17112.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] Length = 1159 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1150 LVQEAAQH 1157 >gi|229014836|ref|ZP_04171934.1| Response regulator [Bacillus mycoides DSM 2048] gi|228746456|gb|EEL96361.1| Response regulator [Bacillus mycoides DSM 2048] Length = 290 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G + IA KL LS T+ Y + KL NR +AI +A + Sbjct: 229 GLTKREMEILEHLSGGLRYKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAIKRARKEN 288 Query: 233 YI 234 + Sbjct: 289 IV 290 >gi|107102108|ref|ZP_01366026.1| hypothetical protein PaerPA_01003157 [Pseudomonas aeruginosa PACS2] Length = 211 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172 FP RL GY+ + E ++ A + I L L ++ S Sbjct: 86 FPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFD 145 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + + + I++KL LS TVN Y KL + ++ A+R G Sbjct: 146 SLSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHG 205 Query: 233 YI 234 + Sbjct: 206 MV 207 >gi|300787344|ref|YP_003767635.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796858|gb|ADJ47233.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 196 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + +L+++E L+L G+G T+ +I+E++ L+ TV Y+ KL R Sbjct: 122 RDSQAKKGPLADLSDQEKKLLELIGEGLTNRQISERMFLAEKTVKNYVSRLLTKLGMERR 181 Query: 222 IQAIAKAIRF 231 QA A Sbjct: 182 TQAAVLATEL 191 >gi|302547687|ref|ZP_07300029.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465305|gb|EFL28398.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 235 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + LT+RE ++ G T+EE+A L +++ TV +LG+ KL A NR++ Sbjct: 162 GQDALTEPLTQRELDVVRRVARGRTNEEVAADLYVTLSTVKTHLGNVQRKLAARNRVEIA 221 Query: 226 AKAIRFGYIC 235 A A G IC Sbjct: 222 AWAWENG-IC 230 >gi|240173027|ref|ZP_04751685.1| regulatory protein, LuxR [Mycobacterium kansasii ATCC 12478] Length = 1097 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + K+ +S +LT E ++L DG + EIA +L +S TV +L Sbjct: 1018 AIAYVRRGRGERKRPASGWASLTPTERDVVRLVADGLANNEIAARLFISRRTVQTHLTHV 1077 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q + G Sbjct: 1078 YAKLGINSRVQLAHEGASRG 1097 >gi|218660891|ref|ZP_03516821.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 65 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE + G T+ EI LG+S TVN ++ +A KL +A A+R G I Sbjct: 5 TPREREIIGCMAAGKTAAEIGAILGISPITVNTHISNAKAKLGVFKETALVAAALRNGII 64 >gi|121608885|ref|YP_996692.1| response regulator receiver protein [Verminephrobacter eiseniae EF01-2] gi|121553525|gb|ABM57674.1| two component transcriptional regulator, LuxR family [Verminephrobacter eiseniae EF01-2] Length = 208 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Query: 148 EAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E G +++ E F R + LT RE L+ G +++IA+ LG+S Sbjct: 114 ELVGLVERMLDHAREAFADYQQAVCREALLSKLTSREAQVLERIVAGRLNKQIADDLGIS 173 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + TV A+ + KL+A + A+ Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIAL 201 >gi|26990794|ref|NP_746219.1| DNA-binding response regulator GacA [Pseudomonas putida KT2440] gi|148547003|ref|YP_001267105.1| two component LuxR family transcriptional regulator [Pseudomonas putida F1] gi|325277352|ref|ZP_08142977.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|24985798|gb|AAN69683.1|AE016604_5 DNA-binding response regulator GacA [Pseudomonas putida KT2440] gi|148511061|gb|ABQ77921.1| two component transcriptional regulator, LuxR family [Pseudomonas putida F1] gi|324097542|gb|EGB95763.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 212 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGACYQVITDF-LELFKKRSSAARNL 174 FP RL + L + I A Q+ L+ F+ + S L Sbjct: 89 FPTRLLQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLALKPFQPQGSPFDAL 148 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE + + I++KL LS TVN Y KL + ++ A+R G + Sbjct: 149 SEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 208 >gi|330817674|ref|YP_004361379.1| two component LuxR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327370067|gb|AEA61423.1| two component LuxR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 212 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 P+ + K G + F E E+ + + + ++R++ LT R Sbjct: 97 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARNESKSVQEQRAASERLSKLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207 >gi|309812054|ref|ZP_07705815.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] gi|308433986|gb|EFP57857.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] Length = 204 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 7/110 (6%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G+ V + A + + L Sbjct: 69 VHGVLAEVPTPLDEAALARMLRADEPYVAPERAAQVWAVACALA-------RAPHPTYAL 121 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L L G ++ IA L LS +TV +L L +R +A Sbjct: 122 SAREREVLDLVARGRSNRSIAATLFLSENTVRNHLARIYRTLGVSSRAEA 171 >gi|256823996|ref|YP_003147956.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687389|gb|ACV05191.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 201 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 4/112 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCL 182 G F + ++EA + + + L+ RET L Sbjct: 92 RALDAGASGFVVKDCPPT--ELLEAVRRTAAGLRTVDADLAAESALAGPNPLSPRETDVL 149 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LA DG EIA L LS TV +L SA K A A A G++ Sbjct: 150 RLAADGQGVAEIAGALFLSPGTVRNHLSSAIGKTGARTSAGAATTARDNGWL 201 >gi|227820767|ref|YP_002824737.1| predicted two-component transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] gi|227339766|gb|ACP23984.1| predicted two-component transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 215 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 38/63 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT +++ L + +G +++IA +LG+S T+ A++ + +KL+ +R QA+ + Sbjct: 148 RLQTLTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLS 207 Query: 230 RFG 232 + G Sbjct: 208 KLG 210 >gi|72162179|ref|YP_289836.1| regulatory protein LuxR [Thermobifida fusca YX] gi|71915911|gb|AAZ55813.1| regulatory protein, LuxR [Thermobifida fusca YX] Length = 917 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 7/121 (5%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 R+ G L + FT L + E A + + D Sbjct: 800 RMAYGTLLRRSRLPSAARPHLRAAVEAFTRLETPLLLQQAKEQLRATGEALDDT------ 853 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT ++ +L +G T+ EIA++L +S TV +L + +L +R++ Sbjct: 854 -PAPTAGLTPQQEQIARLVAEGATNREIAQRLYISPRTVEHHLRNIFRQLQIRSRVELAR 912 Query: 227 K 227 Sbjct: 913 L 913 >gi|77404773|ref|YP_345346.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77390423|gb|ABA81605.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] Length = 240 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L L G G T++EIA+KLGL+ T+ ++ + +K +A NR Q Sbjct: 140 RLTRREREVLNLIGAGKTNKEIAQKLGLAEVTIKMHVRALCLKFEARNRTQLAV 193 >gi|332142261|ref|YP_004427999.1| two-component response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327552283|gb|AEA99001.1| two-component response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 298 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T+RE+ L G TS EI++ L +S T N +L KL N+ A A A+R Sbjct: 236 PITKRESEVLYWISFGKTSWEISQILDMSPRTANKHLEQIYKKLGVDNKTSAAAIALRL 294 >gi|261404981|ref|YP_003241222.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. Y412MC10] gi|261281444|gb|ACX63415.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. Y412MC10] Length = 865 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 35/70 (50%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L LT +ET+ L L G T++ IA++LGL+V TV YL KL Sbjct: 785 EKLASLDLLDHFGTYGLTPQETTVLALLHRGDTNQSIADELGLTVGTVKVYLNRIYSKLG 844 Query: 218 AVNRIQAIAK 227 +R+QA+ K Sbjct: 845 VSSRVQAVLK 854 >gi|114706302|ref|ZP_01439204.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506] gi|114538163|gb|EAU41285.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506] Length = 205 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + + ++ A ++ +L+L +A LT RE L + Sbjct: 102 GTYGFCYQFDDPEVLFDTLLAV--ANGRICIPYLDLTLVNDTAISKLTVRERELLSMLAL 159 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G+T+ +IA + G+S +TV YL + KLD NR A+A Sbjct: 160 GWTNVQIAARTGISQNTVKYYLKNLYEKLDVQNRAMAVA 198 >gi|320322570|gb|EFW78663.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330177|gb|EFW86163.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875366|gb|EGH09515.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330987495|gb|EGH85598.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 209 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 30/64 (46%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L S A +LT R+ L L G T++EIA LG+S TV ++ S L R Sbjct: 136 LSDLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVSTRS 195 Query: 223 QAIA 226 A A Sbjct: 196 AAAA 199 >gi|312200760|ref|YP_004020821.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311232096|gb|ADP84951.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 338 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 36/78 (46%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 HG V+ L K+ S + LT RE +L +G T+ IA +L L+ TV ++ Sbjct: 251 HGDWQAVLDAVLAFLKQPSRGGQRLTARELEVAELVTEGLTNHAIAGRLSLAPRTVETHV 310 Query: 210 GSATVKLDAVNRIQAIAK 227 + KL +R Q A Sbjct: 311 ENIRRKLQVSSRAQIAAW 328 >gi|222080969|ref|YP_002540332.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725648|gb|ACM28737.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 213 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 5/111 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTE 176 P+ + K G + F + ++ +++A + + + S + LT Sbjct: 91 VPMSVRAMKAGALDFLIK--PFRDQDMLDAVSNALALDRERRATKETMSVWKARYETLTA 148 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE + + G +++IA LG+S TV + G K+ + + Sbjct: 149 REREVIAMVTSGLMNKQIAGMLGVSEITVKLHRGHLMEKMGVRTLAELVKI 199 >gi|167836939|ref|ZP_02463822.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 210 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 53/184 (28%), Gaps = 14/184 (7%) Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGLLPFAGIAFP 121 ++ D P + + + + G I Sbjct: 27 DVSIVGEAHDPAGLLALLATTPCDIVITDFAMPDQRAADGLAMLTAIRDGHPSVRVIVLT 86 Query: 122 VRLGFHKNGYVIFTSEFLML----ANEVIIEAHGACYQ-------VITDFLELFKKRSSA 170 + + +L + + A GA Q L + + A Sbjct: 87 MLDNPVLMHTMRQAGALAVLSKRGDLDELPRAVGAVCQGRPFVGTHAGAASGLAMRATDA 146 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE ++L G T +IA + G S+ TV+ + +A KL + + A Sbjct: 147 PPQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 206 Query: 231 FGYI 234 G + Sbjct: 207 NGLV 210 >gi|153832829|ref|ZP_01985496.1| transcriptional regulatory protein UhpA [Vibrio harveyi HY01] gi|148870963|gb|EDL69853.1| transcriptional regulatory protein UhpA [Vibrio harveyi HY01] Length = 202 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L +++ LT RE QL G + IA +LGLS TV+ + +A KL N Sbjct: 130 LATPSDKAATLTQLTRRENEVCQLLARGLDVKSIATELGLSHKTVHVHRANAIDKLGVKN 189 Query: 221 RIQAIAK 227 ++ Sbjct: 190 NVELAKL 196 >gi|17549072|ref|NP_522412.1| transcription regulator PRHJ transcription regulator protein [Ralstonia solanacearum GMI1000] gi|3688537|emb|CAA07191.1| PrhJ [Ralstonia solanacearum] gi|17431323|emb|CAD18002.1| transcription regulator prhj transcription regulator protein [Ralstonia solanacearum GMI1000] gi|219566941|dbj|BAH04972.1| transcription regulator [Ralstonia solanacearum] Length = 174 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + + L E G E + LT R+ L+ A Sbjct: 61 EAVGELPSGQLQPLTLEQTYAMLGRILDARRHGPEPRPDGGARLSALTPRQHDILREAAH 120 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ EIA+ L +SV TV +++ ++LDA NR + A Sbjct: 121 GKSNVEIAQTLHISVETVKSHVRQILMRLDARNRTELAAI 160 >gi|121606652|ref|YP_983981.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595621|gb|ABM39060.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 232 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A L+ RE L L G +++ IA KL ++ TV ++ KL +R+QA A Sbjct: 167 PGAGLLSARERDVLGLIALGDSNKLIARKLDIAETTVKIHVQHILRKLQLTSRVQAAVYA 226 Query: 229 IRFGY 233 Sbjct: 227 ANREL 231 >gi|329923008|ref|ZP_08278524.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941781|gb|EGG38066.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 202 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 46/115 (40%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + + L GY++ +++ +A ++ A G+ L +LT RE Sbjct: 88 SIRLALLAGAEGYMLKSTQVSSMAQQLRALASGSSVVDANVLKTLMLPEKENRADLTPRE 147 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G ++ EIAE+L +S TV L KL+ +R Q R Sbjct: 148 NDILGLVALGCSNREIAEQLFISEGTVRNTLSIILDKLELRDRTQLAIYYWRQSL 202 >gi|327540029|gb|EGF26625.1| protein containing Transcription regulator LuxR domain [Rhodopirellula baltica WH47] Length = 473 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 5/113 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFLELFKKRSSAARNL 174 + +++ T L ++ I + + +L + + + L Sbjct: 351 VRLTHKDGHLVWLLLTCSSLFNDSDQFIGIQVRAVDITHRKHVETLTKLAAEAKAKLKRL 410 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T RE L+ +G ++ IA +L +S TV + + KLDA + + + Sbjct: 411 TIRERQVLEQIVEGRMNKVIANRLEISEKTVERHRSNLMKKLDAQSVAELVKL 463 >gi|312141833|ref|YP_004009169.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311891172|emb|CBH50491.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 866 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSC 181 ++ G + + + A + + L + A LTERE + Sbjct: 753 ANRTGLLGMLATVPRALLTDLDAAARTPSKAVAALLATDAREVYPAAVHHVELTERERAV 812 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA L +S +TV + L + K+DA +R +A+ A R G I Sbjct: 813 LAELARGLSTLEIARTLFVSTNTVKSQLRTLYRKIDAHSRDEALEIAYRTGLI 865 >gi|298383718|ref|ZP_06993279.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298263322|gb|EFI06185.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 257 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A A Sbjct: 197 LSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256 Query: 234 I 234 + Sbjct: 257 L 257 >gi|297156369|gb|ADI06081.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 280 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 17/140 (12%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + E+ L + +A V + + ++ + Sbjct: 157 QAQPEADPALWEEVREAHGDLRALAQQVTDPQLRERILSACGRLAKASSGGTADTAAR-- 214 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L+ RE L G T+ A++LGL TV +YL S+ Sbjct: 215 ---------------PGVELSPREVDVLACVASGATNSAAADRLGLRPETVKSYLRSSMR 259 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A R+ A+ +A R G + Sbjct: 260 KLGAHTRLHAVVEARRAGLL 279 >gi|312137865|ref|YP_004005201.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|325673369|ref|ZP_08153061.1| response regulator [Rhodococcus equi ATCC 33707] gi|311887204|emb|CBH46513.1| LuxR family two component system response regulator [Rhodococcus equi 103S] gi|325555959|gb|EGD25629.1| response regulator [Rhodococcus equi ATCC 33707] Length = 212 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAAR 172 + L GY++ ++ + + A+G A + + RSS R Sbjct: 90 SLLASLRAGARGYLVKGADPAEVERAIRAVANGDMIVGAAVAAKAMTAVAAPRARSSVFR 149 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G+ + I+ +L LS TV ++ + KL +R AI +A G Sbjct: 150 ELTEREHEVLDLIARGHDNATISRRLVLSPKTVRNHVSNVLTKLGVPDRSTAIVRAREAG 209 Query: 233 Y 233 Sbjct: 210 M 210 >gi|260768673|ref|ZP_05877607.1| BarA-associated response regulator UvrY [Vibrio furnissii CIP 102972] gi|260616703|gb|EEX41888.1| BarA-associated response regulator UvrY [Vibrio furnissii CIP 102972] gi|315180374|gb|ADT87288.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 188 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 107 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFAKLD 166 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 167 ISGDVELTHLAIRHGML 183 >gi|256376535|ref|YP_003100195.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920838|gb|ACU36349.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 221 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + L RE G ++EE+A +L LS+ TV YL K+ +R Sbjct: 142 AARPGGPTPFDVLGVREREVAAGVARGLSNEEVAAELSLSLATVKTYLSRVFDKVGVRDR 201 Query: 222 IQAIAKAIRFGY 233 Q + A R G+ Sbjct: 202 TQLVVLAYRTGF 213 >gi|183980157|ref|YP_001848448.1| LuxR family transcriptional regulator [Mycobacterium marinum M] gi|183173483|gb|ACC38593.1| transcriptional regulatory protein (LuxR- family) [Mycobacterium marinum M] Length = 1117 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E ++L +G ++++IA ++ +S TV +L KL +RIQ + + R Sbjct: 1058 SLTPTEHDVVRLVQEGLSNKDIAARMFISPRTVQTHLTHVYTKLGLTSRIQLVHEVARH 1116 >gi|160900247|ref|YP_001565829.1| ATP-dependent transcription regulator LuxR [Delftia acidovorans SPH-1] gi|160365831|gb|ABX37444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Delftia acidovorans SPH-1] Length = 924 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ A LT +E L+L GY++ +AEKL +S TV +L S +KL A +R QA+ Sbjct: 855 PATALAEPLTRKELRVLELLASGYSNAAMAEKLFVSDSTVRTHLRSINLKLGARSRTQAV 914 Query: 226 AKAIRF 231 A A Sbjct: 915 ALAREL 920 >gi|326776576|ref|ZP_08235841.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656909|gb|EGE41755.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 220 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G+G ++ EIA +L ++ TV ++ KL+ +R+QA Sbjct: 151 PAVLDALTRREREVLGCLGEGLSNAEIALRLSMAEATVKTHVSRVLGKLELRSRVQAAVL 210 Query: 228 AIRFGY 233 A G Sbjct: 211 AQELGI 216 >gi|256258754|ref|ZP_05464290.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297247587|ref|ZP_06931305.1| monoamine regulon transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|297174756|gb|EFH34103.1| monoamine regulon transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 245 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 177 GELLTAREVEVVHAIRLGLSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229 >gi|66047505|ref|YP_237346.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|289675883|ref|ZP_06496773.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] gi|302188577|ref|ZP_07265250.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] gi|63258212|gb|AAY39308.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|330938127|gb|EGH41849.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] gi|330952935|gb|EGH53195.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] gi|330969528|gb|EGH69594.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 77 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +++ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ Sbjct: 1 MNTMDINFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60 Query: 218 AVNRIQAIAKAIRFGY 233 N+ A +A G Sbjct: 61 VCNKTAAAVQAALSGM 76 >gi|34497778|ref|NP_901993.1| LuxR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34103634|gb|AAQ59995.1| probable transcriptional regulatory protein, LuxR family [Chromobacterium violaceum ATCC 12472] Length = 224 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ RE L+L DG +S+EIA +L LS T+ + + KL + + Sbjct: 143 RISGREREVLELVADGLSSKEIARELDLSPRTIEVHRANLFSKLGVDSLADLVRF 197 >gi|332829196|gb|EGK01860.1| hypothetical protein HMPREF9455_02008 [Dysgonomonas gadei ATCC BAA-286] Length = 292 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ L++RE L+L G ++E+A+KL +S++TV ++ + T KL I + Sbjct: 222 AQALSQRELDVLRLVALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVSGLIFYCMT 281 Query: 231 FGYI 234 GYI Sbjct: 282 NGYI 285 >gi|284045835|ref|YP_003396175.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950056|gb|ADB52800.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 214 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%) Query: 119 AFPVRL--GFHKNGYV--IFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---RSSAA 171 + V ++ + + ++ A V+ + + + D L + + A Sbjct: 91 SVTVHRAISAGARAFLPKGSSGDEIVEAVSVVADGGSLLPRAVHDTLTMALRQRSEVPAG 150 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L+LA DG T IA+ L + TV +L K +R A+A R Sbjct: 151 PVLSTRELEVLRLASDGLTVSAIAQALIIGDATVKTHLQHIYDKFGVSDRAAAVAHGFRL 210 Query: 232 GYI 234 G++ Sbjct: 211 GFL 213 >gi|296134693|ref|YP_003641935.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] gi|295794815|gb|ADG29605.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] Length = 211 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +++ + L++RE +G + ++A++L +S TV+ + KL Sbjct: 133 LANYMNEGEAAEEPHARLSDREMQVFMRLVEGKSVNQVADELHISCKTVSTHKTRLMHKL 192 Query: 217 DAVNRIQAIAKAIRFGYI 234 N + A+ G + Sbjct: 193 ALDNDADLVRYAMHQGIV 210 >gi|260842730|ref|YP_003220508.1| putative DNA-binding transcriptional regulator FimZ [Escherichia coli O103:H2 str. 12009] gi|257757877|dbj|BAI29374.1| predicted DNA-binding transcriptional regulator FimZ [Escherichia coli O103:H2 str. 12009] Length = 210 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EIA+ L LS TV+A+ + KL + ++ I A + Sbjct: 150 LSNREVTILRYLVSGLSNKEIADNLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|302543141|ref|ZP_07295483.1| putative response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460759|gb|EFL23852.1| putative response regulator [Streptomyces himastatinicus ATCC 53653] Length = 213 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G + EIA KL S TV + T +LD NR A+A A+R G Sbjct: 151 GLTPREIDVLRLVAEGMGTGEIASKLSYSERTVKNIMQGLTTRLDLRNRAHAVAYALREG 210 Query: 233 YI 234 YI Sbjct: 211 YI 212 >gi|255325408|ref|ZP_05366512.1| transcriptional response regulator, receiver domain [Corynebacterium tuberculostearicum SK141] gi|255297494|gb|EET76807.1| transcriptional response regulator, receiver domain [Corynebacterium tuberculostearicum SK141] Length = 219 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 G G V ++ + + Y+ +L + +T Sbjct: 101 HGFLLKDADPEVLAGAVRDVAKGESVLASQVTGPVLEAYRTALTRGQLSAQERQGLSLVT 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G T+ EIA ++ ++ TV ++ S KL A +R+ + A R G Sbjct: 161 RREMEVLSLIARGATNSEIAAEMVIAETTVKTHVSSLMSKLAARDRVALVLFAQRAGI 218 >gi|220912063|ref|YP_002487372.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858941|gb|ACL39283.1| transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 845 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 3/152 (1%) Query: 75 DFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 + GL W + T E++ ++ L +G R + + G V Sbjct: 689 PMVQEAARGLQG-RWAEAMLTLATSWEAADGDALMATAASLEESGFVNLAREAYARAGAV 747 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + + + + +++ F E ++ +LT RE ++LA G T Sbjct: 748 LDQAGERRRSRQAVAQREKCDHELGERFREGRFIAAAPTVHLTRREQDIVELAVQGLTDR 807 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 EIA++L +SV TV +L VKL +R + Sbjct: 808 EIAQRLMVSVRTVEGHLYRTYVKLGVRSRDEL 839 >gi|188534205|ref|YP_001908002.1| response regulator [Erwinia tasmaniensis Et1/99] gi|188029247|emb|CAO97124.1| Response regulator protein [Erwinia tasmaniensis Et1/99] Length = 219 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 33/69 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ S L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 QRAESPFSCLSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|167621653|ref|YP_001672161.1| ATP-dependent transcription regulator LuxR [Caulobacter sp. K31] gi|167351776|gb|ABZ74502.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Caulobacter sp. K31] Length = 182 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E + +Q +G+++ +IAEK +S TV ++ + KL NR+QA+ KA + G Sbjct: 121 LTRKELAMIQRIKEGFSNRDIAEKHRISEDTVKWHIRNIFSKLQVKNRVQALLKAEQIGI 180 Query: 234 I 234 + Sbjct: 181 L 181 >gi|254249293|ref|ZP_04942613.1| Response regulator [Burkholderia cenocepacia PC184] gi|124875794|gb|EAY65784.1| Response regulator [Burkholderia cenocepacia PC184] Length = 247 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 32/74 (43%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + A+NL+ RE ++L G T EIAEKL S T++ A KL Sbjct: 151 AHSSARIVDQAQNLSSREIEVVRLYASGMTVNEIAEKLSRSKKTISTQKARAMQKLGVEK 210 Query: 221 RIQAIAKAIRFGYI 234 I + A+ G + Sbjct: 211 DIDLLRYAMEHGIV 224 >gi|15608498|ref|NP_215874.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|148661147|ref|YP_001282670.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|167969108|ref|ZP_02551385.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|215403206|ref|ZP_03415387.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215411003|ref|ZP_03419811.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215426686|ref|ZP_03424605.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T92] gi|215430244|ref|ZP_03428163.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215445540|ref|ZP_03432292.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T85] gi|260200414|ref|ZP_05767905.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T46] gi|289442801|ref|ZP_06432545.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289745110|ref|ZP_06504488.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289749914|ref|ZP_06509292.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289753440|ref|ZP_06512818.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289757463|ref|ZP_06516841.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294994916|ref|ZP_06800607.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 210] gi|298524865|ref|ZP_07012274.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306784088|ref|ZP_07422410.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu003] gi|306803061|ref|ZP_07439729.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu008] gi|306971645|ref|ZP_07484306.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu010] gi|307079357|ref|ZP_07488527.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu011] gi|307083922|ref|ZP_07493035.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu012] gi|1419061|emb|CAA99963.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148505299|gb|ABQ73108.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|289415720|gb|EFD12960.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289685638|gb|EFD53126.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289690501|gb|EFD57930.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289694027|gb|EFD61456.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289713027|gb|EFD77039.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298494659|gb|EFI29953.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308331157|gb|EFP20008.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu003] gi|308350279|gb|EFP39130.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu008] gi|308358872|gb|EFP47723.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu010] gi|308362809|gb|EFP51660.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu011] gi|308366456|gb|EFP55307.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu012] Length = 1159 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1150 LVQEAAQH 1157 >gi|88798051|ref|ZP_01113638.1| Response regulator [Reinekea sp. MED297] gi|88779248|gb|EAR10436.1| Response regulator [Reinekea sp. MED297] Length = 200 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 45/114 (39%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 V + ++ + + A V+ + R + LT R+ Sbjct: 85 TVDHDASIQQMLRLGADCFIAKSSPRAVMIDALQSVVNGERVVISARRDESITLTPRQLE 144 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++EIA ++ +S TV Y+ + D NR Q + KA + G+I Sbjct: 145 TLELLALGLPNKEIASQMTISPATVREYVSDLLIAFDCDNRTQLVLKAHQLGFI 198 >gi|326902980|gb|EGE49913.1| transcriptional regulator [Mycobacterium tuberculosis W-148] Length = 1158 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1089 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1148 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1149 LVQEAAQH 1156 >gi|294013481|ref|YP_003546941.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676811|dbj|BAI98329.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 222 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 163 LFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L ++ + A LT+R+ L+L G ++++IA++L +S TV ++ + A Sbjct: 147 LNERIALAVDKSKLLTKRQRDVLRLLAQGASNKDIAQRLNISESTVKVHVRAIMAVNGAS 206 Query: 220 NRIQAIAKAIRFG 232 NR Q +A ++ G Sbjct: 207 NRTQIVAHLLKGG 219 >gi|238752716|ref|ZP_04614186.1| Response regulator uvrY [Yersinia rohdei ATCC 43380] gi|238709047|gb|EEQ01295.1| Response regulator uvrY [Yersinia rohdei ATCC 43380] Length = 166 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 33/76 (43%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L + L+ERE + + G EI+E+L LS TVN+Y KL+ Sbjct: 81 MALGQLEPPTETPFSCLSERELQIMIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 140 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR G Sbjct: 141 ISGDVELTHLAIRHGM 156 >gi|256833722|ref|YP_003162449.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256687253|gb|ACV10146.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 230 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE Q G +++EI++ L +S+ TV ++ K D NR+Q AIR Sbjct: 161 EQLTERELDVAQQIAQGKSNQEISQTLYMSIPTVKTHISRIFTKFDVDNRVQ---IAIRM 217 >gi|182413369|ref|YP_001818435.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840583|gb|ACB74835.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 229 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 6/115 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQVITDFLELFKKRSS-----AARNLT 175 +R G E L+ A +V+ ++ L+ R LT Sbjct: 106 LRAGARGYIMKEAGGEALLAAIRQVLTGEVYVSPKMSARILDSLSGRKPRGSQSPIEKLT 165 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +RE QL G G ++ +IA++L LS TV+ + G KL+ + + A+R Sbjct: 166 DREFEVFQLIGQGKSTRDIAKQLHLSSKTVDVHRGHIKEKLELKDTTSLVRHAVR 220 >gi|315639869|ref|ZP_07895000.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315484294|gb|EFU74759.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 211 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 33/76 (43%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L LT+RE L L GY+++EIA +L LSV T+ + + KL Sbjct: 134 SHLPHSDDEDQCYETLTKREKELLPLIALGYSNKEIASQLFLSVKTIEVHKTNIRKKLAI 193 Query: 219 VNRIQAIAKAIRFGYI 234 + + + ++ I Sbjct: 194 NHYPELLRYCVKHHLI 209 >gi|313499754|gb|ADR61120.1| LuxR family DNA-binding response regulator [Pseudomonas putida BIRD-1] Length = 219 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + VI L ++ +A NLT R+ L+L G ++ EIA LGLS+ TV Sbjct: 129 AIAHTVINQALRHTQQGKPSADERHNLTSRQLEILRLIVRGKSTREIAGGLGLSIKTVET 188 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +L + + A+R I Sbjct: 189 HRSQIMKRLQIHDVAGLVLFAVREKII 215 >gi|256397404|ref|YP_003118968.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363630|gb|ACU77127.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 1084 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G ++ +I E+L +S T + ++ + KL R +A A A R Sbjct: 1020 GLTARELEVLALVAQGLSNRQIGERLFISTKTASVHVSNILAKLGVSGRGEAAAVAHRL 1078 >gi|227538925|ref|ZP_03968974.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300770449|ref|ZP_07080328.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227241128|gb|EEI91143.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300762925|gb|EFK59742.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 211 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE LQ G T+ IA++L LS T+ + K A N I A+ Sbjct: 149 PKLTKREKEILQHIALGKTTTTIADELFLSPLTIETHRKRMMSKFKAKNMAALIKTAMEH 208 Query: 232 GYI 234 I Sbjct: 209 NLI 211 >gi|254427699|ref|ZP_05041406.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] gi|196193868|gb|EDX88827.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] Length = 217 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE + + + + +++A+KL LS TVN Y KL + ++ A+R Sbjct: 147 DMLSERELQIMMMIVNCHKVQDVADKLCLSPKTVNTYRYRIFDKLGVTSDVEMALLAVRH 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|154486623|ref|ZP_02028030.1| hypothetical protein BIFADO_00440 [Bifidobacterium adolescentis L2-32] gi|154084486|gb|EDN83531.1| hypothetical protein BIFADO_00440 [Bifidobacterium adolescentis L2-32] Length = 209 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L+ +E + G+T+ IA +L +S +V Y A KL A +R +A+A +R Sbjct: 146 SMRLSGKELQIIANYARGFTTSTIAHQLNISEASVKTYARRAFEKLHAHSRAEAVAMCVR 205 Query: 231 FGYI 234 G+I Sbjct: 206 NGWI 209 >gi|170723185|ref|YP_001750873.1| two component LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169761188|gb|ACA74504.1| two component transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 216 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT ++ L + +G +++IA +L +S T+ A++ + KL R QA + Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210 >gi|83646031|ref|YP_434466.1| LuxR family regulatory protein [Hahella chejuensis KCTC 2396] gi|83634074|gb|ABC30041.1| probable regulatory protein, luxR family [Hahella chejuensis KCTC 2396] Length = 896 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ L++RE L L G ++ EIA+ L S+ TV ++ + KL A NR+ AI K Sbjct: 831 SANLAALSKREKQVLDLLVTGMSNPEIADALCRSLGTVKIHVHNIYRKLGAANRVAAINK 890 >gi|15840814|ref|NP_335851.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|13881010|gb|AAK45665.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis CDC1551] Length = 1159 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1150 LVQEAAQH 1157 >gi|329907334|ref|ZP_08274644.1| two component transcriptional regulator, LuxR family protein [Oxalobacteraceae bacterium IMCC9480] gi|327546995|gb|EGF31889.1| two component transcriptional regulator, LuxR family protein [Oxalobacteraceae bacterium IMCC9480] Length = 213 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 1/97 (1%) Query: 139 LMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++ EL + L++RE ++L G + +IA Sbjct: 116 IDAVRTAAAGRKYVSPALVERLAELLGEGVRFPHEALSDRELEVMKLLASGDSLVQIAAT 175 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV Y K AI G I Sbjct: 176 LHLSASTVTTYRARILEKTGLKGNTALSRYAIEHGLI 212 >gi|302521872|ref|ZP_07274214.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] gi|302430767|gb|EFL02583.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] Length = 274 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 11/117 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-----------HGACYQVITDFLELFKKRSSAAR 172 L +G+++ S + L V A ++ + + + Sbjct: 154 LAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRIIEGHLSGRRQPSDQELARLG 213 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L+L DG ++ EIAE+L +S+HTV ++ +K +R QA A Sbjct: 214 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 270 >gi|119961290|ref|YP_949663.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119948149|gb|ABM07060.1| putative transcriptional regulator, LuxR family [Arthrobacter aurescens TC1] Length = 878 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A+ LT RE L L + E++A +L LSV+TV ++ KL A +R A+A Sbjct: 811 ARRAQALTPREREVLTLLPSHLSQEQMAAELHLSVNTVKTHVRIIYSKLGAGSRHDAVAA 870 Query: 228 AIRFGYI 234 A + GY+ Sbjct: 871 AYKSGYL 877 >gi|170736604|ref|YP_001777864.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818792|gb|ACA93374.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 241 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 32/74 (43%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + A+NL+ RE ++L G T EIAEKL S T++ A KL Sbjct: 145 AHSSARIVDQAQNLSSREIEVVRLYASGMTVNEIAEKLSRSKKTISTQKARAMQKLGVEK 204 Query: 221 RIQAIAKAIRFGYI 234 I + A+ G + Sbjct: 205 DIDLLRYAMEHGIV 218 >gi|83647746|ref|YP_436181.1| response regulator [Hahella chejuensis KCTC 2396] gi|83635789|gb|ABC31756.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 221 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT ++ L + +G +++IA L +S TV A++ + KL NR QA+ Sbjct: 146 SERLATLTPQQFRVLGMLTEGMLNKQIAYDLDVSEATVKAHITALFRKLGVRNRTQAVI 204 >gi|87309029|ref|ZP_01091167.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] gi|87288372|gb|EAQ80268.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] Length = 220 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT RE + G G TS EIA +L LSVHTV+ + K+ A + + I Sbjct: 151 PSDPINRLTNREREIFTMIGHGQTSAEIASQLNLSVHTVDTHRERLCRKISAKSSAELIR 210 Query: 227 KAIR 230 +A++ Sbjct: 211 RAMQ 214 >gi|332296369|ref|YP_004438292.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] gi|332179472|gb|AEE15161.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] Length = 459 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE ++ G IAE + +S +T ++ + K + NR + I Sbjct: 401 GLTPREKEIVKYILMGRNGRYIAEIMHISENTFKTHMRNIFRKCNVSNRQELI 453 >gi|332528810|ref|ZP_08404787.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332041876|gb|EGI78225.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 181 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 R+ L+L DG T++EI L LS TV ++ + R QA+ A + GY Sbjct: 110 RQEEVLRLLLDGLTNKEIGRLLDLSDETVKNHVSNILRCFGVATRTQAVLAARKHGY 166 >gi|330820816|ref|YP_004349678.1| putative metal dependent phosphohydrolase [Burkholderia gladioli BSR3] gi|327372811|gb|AEA64166.1| putative metal dependent phosphohydrolase [Burkholderia gladioli BSR3] Length = 481 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R A L+ RE L+ G +++E A L LS TV ++ S KLD R A Sbjct: 413 PRRPATPLLSPREIEVLRQISGGLSNKEAARVLALSPSTVRTHVESIFRKLDCSTRAAAT 472 Query: 226 AKAIRFGYI 234 KA+ G + Sbjct: 473 LKALTTGLL 481 >gi|307327703|ref|ZP_07606887.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886601|gb|EFN17603.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 233 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G+G + +IAE++GL+ TV ++ + KL +NR+QA A R G Sbjct: 163 LTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|239988349|ref|ZP_04709013.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 224 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN-----LT 175 L G+++ S L V + A +V+ + K ++ A LT Sbjct: 97 LRAGAAGFLLKDSAVDELIPGVRLLAAGGSALSERVVRSLPDGAGKEAAPADPPGARLLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L+L G ++EEI +L LS TV ++ S KL A NR+QA A Sbjct: 157 AREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIA 209 >gi|238027862|ref|YP_002912093.1| Two component transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237877056|gb|ACR29389.1| Two component transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 218 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNLTE 176 + + + ++ + + E A QV +L + A LT Sbjct: 98 LNHPALAQRLLYLGAHAVVCKEDSLEELLAAVDQVAVQGSTYLSKQLRGTAPAPASALTP 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+ G G + +I+ ++ ++V TV+ + +A KL+ + ++ I G Sbjct: 158 RELEVLRHIGCGLSVVDISRRMFVTVSTVSTHKRNAMDKLNIRSTVELIQYIHAAGL 214 >gi|225872367|ref|YP_002753822.1| two-component system response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794530|gb|ACO34620.1| two-component system response regulator [Acidobacterium capsulatum ATCC 51196] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL +G +++E A LG S TV + KL N + A+R Sbjct: 150 ERLTPREGEVLQLLAEGKSTKEAASVLGTSTFTVETQRKNVMRKLRLRNVSDLVRYAVRN 209 Query: 232 GYI 234 I Sbjct: 210 HMI 212 >gi|269864222|ref|XP_002651497.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348] gi|220064414|gb|EED42559.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348] Length = 206 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L G T++EIA +L +S +TV ++ S L+ NR A+A A G Sbjct: 145 KLTSRQREVWHLIAQGKTNKEIAAELEISPYTVRIHVSSLIRALNVPNR--AVAAARFAG 202 >gi|254231608|ref|ZP_04924935.1| hypothetical protein TBCG_01339 [Mycobacterium tuberculosis C] gi|124600667|gb|EAY59677.1| hypothetical protein TBCG_01339 [Mycobacterium tuberculosis C] Length = 1159 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1150 LVQEAAQH 1157 >gi|23094404|emb|CAD28140.1| putative LuxR-like transcriptional regulator [Rhodococcus opacus] Length = 413 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE L G ++ IA +LG+S T+ ++ S KLD NR +A A I+ G Sbjct: 345 LNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDVANRGEAGAIGIQAGI 404 Query: 234 I 234 + Sbjct: 405 V 405 >gi|253999066|ref|YP_003051129.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253985745|gb|ACT50602.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 348 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 31/89 (34%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + Q L R S L+ RE + ++ +EIA + GLS T Sbjct: 236 QLPIGIYLNQQQAGGLTRLDIGRPSPLDKLSRREREVARGFAQAHSYKEIAVETGLSPAT 295 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V YL KL ++ + + R Sbjct: 296 VRHYLRGIYAKLAINDKAELVRLVTRHEL 324 >gi|239992553|ref|ZP_04713217.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 567 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 6/137 (4%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 + G L +G+ + + + + Sbjct: 430 VSAADAWTRLERPYEAAYVKEARGLHLLTSGV------PGGRTVLHQAIAAYEDIDAVWD 483 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + +L+ RE + +LA G ++ EIA +L LS TV Sbjct: 484 VLRCQRELREHGQTTVRRPGALGYGDHLSPRERAVARLASLGLSNREIARELVLSHRTVE 543 Query: 207 AYLGSATVKLDAVNRIQ 223 ++ A KL +R + Sbjct: 544 HHVARALRKLGVSSRTE 560 >gi|258650584|ref|YP_003199740.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553809|gb|ACV76751.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 524 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +R + A LT RE L LA G +S +IA +L +S T +L K NR A Sbjct: 448 PRRRARATGLTAREEQVLALAAVGRSSRQIAAELTISEKTARNHLEHIYTKTGVSNRAGA 507 Query: 225 IAKAIRFGYI 234 A++ G + Sbjct: 508 SLFAVQHGIV 517 >gi|229821191|ref|YP_002882717.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567104|gb|ACQ80955.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 230 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G ++ EI L +S TV +++ S KL +R+Q + A G Sbjct: 165 RLTRREHEVLLAVARGSSNREIGAALDVSEATVKSHVRSLLAKLGLASRVQLVIFAYSEG 224 Query: 233 YI 234 + Sbjct: 225 LV 226 >gi|220911420|ref|YP_002486729.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858298|gb|ACL38640.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 208 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 9/125 (7%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ--- 155 + R+ G A + F + A E I A Q Sbjct: 67 EAIRRIRGLNSGQAILVFTTYDSDADIVRAVDAGAMGYLLKDAAPEEIFAAVRGAVQGRS 126 Query: 156 VITD--FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 V++ LF++ + LT RE L L G ++ E+ ++L +S TV +L Sbjct: 127 VMSPPVASRLFQQLRNPEEVLTPREAELLSLLTQGLSNRELGQRLFISEATVKTHLAHIY 186 Query: 214 VKLDA 218 KL Sbjct: 187 SKLGV 191 >gi|163851404|ref|YP_001639447.1| regulatory protein LuxR [Methylobacterium extorquens PA1] gi|163663009|gb|ABY30376.1| regulatory protein LuxR [Methylobacterium extorquens PA1] Length = 235 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 47/140 (33%) Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 G+ +R+ A + + +V + + + V+ A GA Sbjct: 74 ARIAALREGRPWLRVLAVFRTLDAPAMSRLITAGADAFVGYGTPADEVCASVLALAKGAP 133 Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + LT RE L+ G++++E+A +L LSV TV + + Sbjct: 134 SAPSAASSSVCPPAEDPVIGLTPREAEVLRFLSAGFSNKEVARRLSLSVRTVETHRLNLR 193 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 K + A + G Sbjct: 194 RKTQTGRLKDLVTLARQLGL 213 >gi|144898192|emb|CAM75056.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 222 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +S L+ RE L + DG ++ IA L TV A+L + K+ NR +A Sbjct: 148 GKSGPLAVLSAREMEILGMIVDGAPNKVIARAFELQEVTVKAHLRNIFRKIAVSNRTEAA 207 Query: 226 AKAIRFGY 233 AI G Sbjct: 208 RVAILAGL 215 >gi|86750181|ref|YP_486677.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573209|gb|ABD07766.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 217 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTE 176 ++ + G T L A ++ ++ + ++ + L Sbjct: 95 VSQMIDAGASGLLLKTCTVNELETAIRDVLAGRIVLDPLLQKGAPRARTAAAESEITLGS 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ L L G+T+ EIAE+LG+S+ T ++ + VKL A NR +A A+R + Sbjct: 155 QQKKVLALLVKGFTNSEIAERLGISLPTARYHVSAILVKLGASNRAEAAGLAVRLNIV 212 >gi|311067149|ref|YP_003972072.1| DNA-binding response regulator, luxR family protein [Bacillus atrophaeus 1942] gi|310867666|gb|ADP31141.1| DNA-binding response regulator, luxR family protein [Bacillus atrophaeus 1942] Length = 200 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT +E L L + T+ EI+ +L +S TV Y+ S K+ A +R+ A+ I+ Sbjct: 135 GERLTHKELEVLTLIAEDKTNMEISTELMISKRTVERYISSIIQKMKANSRVGAVVNGIK 194 Query: 231 FGYI 234 G + Sbjct: 195 QGLL 198 >gi|299135525|ref|ZP_07028709.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298601649|gb|EFI57803.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 207 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 E I A + + L + S+ L+ERE LQ AGDG +S EIA Sbjct: 111 ERPASELAEAIRRVHAGLRAVDPALA-AEAWSADEDPLSERERRILQRAGDGRSSAEIAA 169 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV YL A KL A NR+ A A G++ Sbjct: 170 ELRLSEGTVRNYLSEAIAKLGAANRVDAARIARARGWL 207 >gi|158339159|ref|YP_001520336.1| TPR repeat-containing transcriptional regulator LuxR [Acaryochloris marina MBIC11017] gi|158309400|gb|ABW31017.1| transcriptional regulator, LuxR family with TPR repeats [Acaryochloris marina MBIC11017] Length = 910 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L++RE L+L + EIA +L +S++T+ + + KL NR A+ +A Sbjct: 847 AEPLSDRELDVLKLLRTELSGPEIARELMVSLNTMRTHTKNIYSKLGVNNRRSAVKRAAE 906 Query: 231 FGYI 234 + Sbjct: 907 LELL 910 >gi|121637289|ref|YP_977512.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989763|ref|YP_002644450.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121492936|emb|CAL71407.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772876|dbj|BAH25682.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 1159 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1150 LVQEAAQH 1157 >gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 230 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 74/221 (33%), Gaps = 23/221 (10%) Query: 14 LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + L ++ + + + + SAL+ R++ L + + D Sbjct: 16 VDDTPDNLAMLSDALNDAGYMVLVALDGLSALNRIERRRPDLILLDAMMPGLDGFETCRR 75 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 H + +P+++ + E+ G + P++ Sbjct: 76 IK-----EHPANADIPVLFMTALTESRHVVQGFEV-------GGSDYVTKPIQTD----- 118 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDG 188 + L I+ + A Q L E + SA LT RE L+ G Sbjct: 119 -EVLARVAAHLRTSRILLSARAASQPAAPSLDDEPAHRVLSARFQLTGREVEVLRWVACG 177 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 T+ +I L LS TVN +L VKL R A + A+ Sbjct: 178 KTNRDIGTILDLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218 >gi|324325252|gb|ADY20512.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 219 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 36/88 (40%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + Q L +K + LT+RE L G T++ IA L LS ++ Sbjct: 127 LFRQLRIQQFSAKSLLQSEKTNELPITLTQREREILIFVQQGMTNKNIALTLNLSQRSIE 186 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L KL +R++A+ KA G + Sbjct: 187 YTLTELFNKLRVSSRVEAVEKAKSLGIL 214 >gi|302544316|ref|ZP_07296658.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461934|gb|EFL25027.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 268 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 40/77 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +++ +LT RE L L G G + +AE+L +S TV ++ KL Sbjct: 186 HRESARSTAEQTGRLESLTRREQEILTLMGQGLDNRAVAEQLSISYATVRTHVRKILEKL 245 Query: 217 DAVNRIQAIAKAIRFGY 233 + ++++A+AKA +G+ Sbjct: 246 EVRSQLEAVAKATEWGF 262 >gi|188590891|ref|YP_001795491.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|170937785|emb|CAP62769.1| RESPONSE REGULATOR, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 210 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178 +R G + L+ A + + + D L + + L+ERE Sbjct: 94 IRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGGLDKPTEQPVHQMLSERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + IA++L LSV TV+ Y K+ AI+ G + Sbjct: 154 FQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209 >gi|167563059|ref|ZP_02355975.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] Length = 78 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + A L+ RE ++L G T +IA + G S+ TV+ + +A KL + + Sbjct: 7 LAMRAADAPPQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDV 66 Query: 223 QAIAKAIRFGYI 234 A G + Sbjct: 67 DLFMYASENGLV 78 >gi|29347591|ref|NP_811094.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253572052|ref|ZP_04849456.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|29339492|gb|AAO77288.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251838232|gb|EES66319.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 257 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A A Sbjct: 197 LSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256 Query: 234 I 234 + Sbjct: 257 L 257 >gi|31792554|ref|NP_855047.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|31618143|emb|CAD94254.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] Length = 1159 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149 Query: 224 AIAKAIRF 231 + +A + Sbjct: 1150 LVQEAAQH 1157 >gi|294010480|ref|YP_003543940.1| response regulator UhpA [Sphingobium japonicum UT26S] gi|292673810|dbj|BAI95328.1| response regulator UhpA [Sphingobium japonicum UT26S] Length = 207 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGL 200 GA + ++ + + LT RE L+ +G ++ IA LG Sbjct: 110 AALLGAVSRAFARLDDVDLRTLETSEAGVRVAALTPREREVLERLANGLPNKTIAYDLGC 169 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 S TV + S KL+ N +A+ A G Sbjct: 170 SSRTVEVHRASLMAKLEVRNLSEALRIAFAAGM 202 >gi|289754597|ref|ZP_06513975.1| predicted protein [Mycobacterium tuberculosis EAS054] gi|289695184|gb|EFD62613.1| predicted protein [Mycobacterium tuberculosis EAS054] Length = 677 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 589 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 648 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A R G Sbjct: 649 YTKLGLSSRLQLAQQAARRG 668 >gi|289644029|ref|ZP_06476128.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289506154|gb|EFD27154.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 73 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G +E+I E+L +S TV +++ + KL A NR AIA +R Sbjct: 11 LTSREREVADLMCAGLPNEQIGERLVISPATVKSHIRAILRKLGAANRSHAIAIHLRH 68 >gi|288916832|ref|ZP_06411205.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351717|gb|EFC85921.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 677 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + ++ LT+RE +L G ++ EIA L LS T+ +L KL Sbjct: 602 RRIAADGRTAAQVAALTDRELDVARLIRSGKSNREIAAALFLSEKTIEHHLTRIFAKLGV 661 Query: 219 VNRIQAIAKAIRF 231 +R A + R Sbjct: 662 SSRAAAASILTRA 674 >gi|284034369|ref|YP_003384300.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813662|gb|ADB35501.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 199 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G T++EIA L LS TV YL K A +RI+AI KA G Sbjct: 138 PLTDRECEVLRQVTTGATAQEIARTLSLSAGTVRNYLSRILTKTGARSRIEAIRKAQDAG 197 Query: 233 YI 234 +I Sbjct: 198 WI 199 >gi|212694892|ref|ZP_03303020.1| hypothetical protein BACDOR_04426 [Bacteroides dorei DSM 17855] gi|237710761|ref|ZP_04541242.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|237727151|ref|ZP_04557632.1| transcriptional regulator [Bacteroides sp. D4] gi|265750433|ref|ZP_06086496.1| 6-phosphogluconate dehydrogenase [Bacteroides sp. 3_1_33FAA] gi|212662570|gb|EEB23144.1| hypothetical protein BACDOR_04426 [Bacteroides dorei DSM 17855] gi|229434007|gb|EEO44084.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|229455483|gb|EEO61204.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|263237329|gb|EEZ22779.1| 6-phosphogluconate dehydrogenase [Bacteroides sp. 3_1_33FAA] Length = 203 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE + G T++E AEKL LS+HTV + + KL + AI Sbjct: 132 ETLSQREKEIICCVVRGMTNKETAEKLFLSIHTVITHRRNIARKLQIHSPAGLTIYAIVN 191 Query: 232 GYI 234 + Sbjct: 192 KLV 194 >gi|146283191|ref|YP_001173344.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145571396|gb|ABP80502.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri A1501] gi|327481559|gb|AEA84869.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 215 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLG 199 ++ +++ L +++ SSA LT RE L LAG G ++ EI EKL Sbjct: 118 RTLLTGGDWLPRELMEALLSRYRQLSSANQVIDELTLREKQILALAGQGLSNAEIGEKLH 177 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQ 223 LS+HT+ +++ +A KL A NR Q Sbjct: 178 LSIHTIKSHVHNALRKLGASNRAQ 201 >gi|332669021|ref|YP_004452029.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338059|gb|AEE44642.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 222 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 18/162 (11%) Query: 91 SIQEETVIESSGQLSVRLEGGLL---PFAGIAFPVRLGFHKNGYVIFTSEF---LMLANE 144 + + +E++ QL + + L + + Sbjct: 61 RMADMDGVEATRQLFLPERAARRTRPLRVLVLTTFDLDDRAAAAIRHGASGFLLKDTTPA 120 Query: 145 VIIEAHG--------ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192 ++ +A Q ++ LE + + A L+++E + G ++ Sbjct: 121 MLRDAIRTVHAGNAVLAPQDLSTLLEGRFRTPTPAPPGYLALSDKEREVFEAVARGLSNT 180 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ + S TV ++GS KL +R+Q + A G + Sbjct: 181 EIAQAVLASESTVKTHVGSILRKLALRDRVQVVVFAHEHGLV 222 >gi|257092348|ref|YP_003165989.1| two component LuxR family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044872|gb|ACV34060.1| two component transcriptional regulator, LuxR family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 213 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +E+ + R SA+ L++RE L+ G + +IAE L LS TV Y K Sbjct: 138 AVEVGQGRKSASDALSDREIEVLRRLASGESLTQIAEALHLSPKTVTTYRARIVEKTGLH 197 Query: 220 NRIQAIAKAIRFGYI 234 + + A+ G + Sbjct: 198 SNAELTRYALDKGML 212 >gi|322421400|ref|YP_004200623.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320127787|gb|ADW15347.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 216 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 34/74 (45%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + + NL+ RE LQL DG ++EIA G+SV TV S KLD Sbjct: 139 LQRIPDEVPATYENLSAREREILQLIADGSNAKEIAFAFGVSVKTVENQRHSIMKKLDLF 198 Query: 220 NRIQAIAKAIRFGY 233 + + A+R G Sbjct: 199 SIAELTKYAVRQGL 212 >gi|239983155|ref|ZP_04705679.1| LuxR family transcriptional regulator [Streptomyces albus J1074] gi|291454986|ref|ZP_06594376.1| LuxR-family transcriptional regulator [Streptomyces albus J1074] gi|291357935|gb|EFE84837.1| LuxR-family transcriptional regulator [Streptomyces albus J1074] Length = 275 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 52/167 (31%), Gaps = 12/167 (7%) Query: 80 FNSGLLPI---IWQSIQEETVIESSGQLSVRLEGGLLPFAG----IAFP-----VRLGFH 127 P+ + ++ LL AG + P VR Sbjct: 108 ALRAPTPVGDRTLSAAVAAARDIEQALVAREEAAHLLSRAGEPPRTSSPAAWEEVREIHG 167 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + L E++ + LT RE L Sbjct: 168 ELRTLAGRLPDPALRAELLAACTRLARAGQPGAVAPPGAPKLPPTVLTPREVDVLVCVAG 227 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +A +LG+ TV YL SA KL A R++A+ A R G + Sbjct: 228 GATNAAVAGRLGVRPETVKGYLRSAMRKLGAHTRLEAVVAARRQGLL 274 >gi|237728835|ref|ZP_04559316.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909457|gb|EEH95375.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 201 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ R+ L + G ++++I L +S TV A+L S +L+ NR QA Sbjct: 142 LSARQREILTMLAAGESNKQIGRLLNISTGTVKAHLESLYQRLEVKNRTQAAMM 195 >gi|183602522|ref|ZP_02963887.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241190596|ref|YP_002967990.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196002|ref|YP_002969557.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218163|gb|EDT88809.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240248988|gb|ACS45928.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250556|gb|ACS47495.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178334|gb|ADC85580.1| hypothetical protein BIF_00316 [Bifidobacterium animalis subsp. lactis BB-12] gi|295793583|gb|ADG33118.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 228 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 Q L K A +++ E + ++L +G ++ IAE+ G S TV Y+ A Sbjct: 151 QQAHERLLMQGK---PAIMSMSPNEQAVMELCSEGLSTRTIAEETGDSESTVKTYISRAM 207 Query: 214 VKLDAVNRIQAIA 226 KL A +R +A+A Sbjct: 208 RKLRAKSRAEAVA 220 >gi|86739019|ref|YP_479419.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86565881|gb|ABD09690.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE + L G G +++EIA +L +S T ++ VKL A +R Q A + Sbjct: 152 RGLTVREREVMSLVGHGLSNDEIAARLVISPATARTHVSRVMVKLAARDRAQLAVLAHQA 211 Query: 232 GYI 234 G + Sbjct: 212 GLV 214 >gi|260904389|ref|ZP_05912711.1| two component transcriptional regulator, LuxR family protein [Brevibacterium linens BL2] Length = 220 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + A LTERE +Q G T+ EI ++L S TV A+L S +L NR++ Sbjct: 147 DQAIEALSQLTEREREVVQYVAQGLTNAEIGKRLHCSPATVKAHLASIFTQLQITNRVRL 206 Query: 225 IAKAIRFGY 233 G Sbjct: 207 AVLGHDAGL 215 >gi|317503418|ref|ZP_07961460.1| transcriptional regulator [Prevotella salivae DSM 15606] gi|315665470|gb|EFV05095.1| transcriptional regulator [Prevotella salivae DSM 15606] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G+ ++EIA +L + + TV ++ + KL + A+ GY Sbjct: 149 LSDREIEVLSLIAQGFINKEIANQLNIGLTTVISHRKNIVEKLGMKSVSALTIYAVMHGY 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|293607367|ref|ZP_06689706.1| LuxR family DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292814211|gb|EFF73353.1| LuxR family DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 212 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A A V + ++ R LT R+ L+L DG ++EI+E+L ++ TV Sbjct: 122 AAQPAHRPVAAAAATATQDEAALLRTLTPRQQEVLRLMCDGLRNKEISERLCMTEKTVKT 181 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFG 232 ++ + L +NR QA A R G Sbjct: 182 HVSAILAALGVLNRTQATLVARRGG 206 >gi|295700936|ref|YP_003608829.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440149|gb|ADG19318.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 218 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTE 176 P+ + K G V F + + ++EA A +V + + + +LT Sbjct: 93 IPMSVRAMKTGAVDFLPK--PFRGQDMVEAVTAALEVDRERRAKEQSAVALRKQYESLTP 150 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L G +++IA +L LS TV + G A K+ + + + KA G + Sbjct: 151 RERKIMELVASGLLNKQIATELNLSEITVKLHRGQAMKKMKSPSFADFVLKAEALGLV 208 >gi|260885074|ref|ZP_05896688.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260874602|gb|EEX81671.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] Length = 254 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 186 GELLTAREVEVVHAIRLGLSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238 >gi|320012915|gb|ADW07765.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 204 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 38/80 (47%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + + + R+LTERE L+L DG ++ EIAE+L +S+HTV+ ++ Sbjct: 121 QRIIEGHLRGRRRPSDQDLARLRDLTEREIDVLRLIRDGLSNAEIAERLVVSLHTVSTHV 180 Query: 210 GSATVKLDAVNRIQAIAKAI 229 K +R QA A Sbjct: 181 SRVLTKTGCQSRAQAAVLAR 200 >gi|269127167|ref|YP_003300537.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312125|gb|ACY98499.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 49/144 (34%), Gaps = 7/144 (4%) Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGA 152 + G + LG + E + A Sbjct: 58 PGADGLTVAEQLRETGARCAVCILTSLGRPGYLRRAMAAGVRGFIAKDAPAEDLAAAVRK 117 Query: 153 CYQ--VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + D ++ LTERE L+L G G + IAE L LS TV YL Sbjct: 118 VHAGGRYLDAELAASAMAAGDNPLTERERQILRLIGRGMEAPGIAEALHLSQGTVRNYLS 177 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 SA KLDA NR+ A+ A G+I Sbjct: 178 SAMTKLDAPNRLAAVRTAEEMGWI 201 >gi|120611131|ref|YP_970809.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|326317560|ref|YP_004235232.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120589595|gb|ABM33035.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] gi|323374396|gb|ADX46665.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 208 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 4/136 (2%) Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 ++ ++E L + G ++ G F + L+ + +++ Sbjct: 70 QDRLLERKSPLPIVFITGHGDVPMAVNTMKKGALDFIQKPFNEDELVSLVDRMLDRARES 129 Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + R + LT RE L+ G +++IA+ LG+S+ TV A+ + Sbjct: 130 FAGHQQAAS----RDALLSKLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIM 185 Query: 214 VKLDAVNRIQAIAKAI 229 KL+A + A+ Sbjct: 186 EKLNANTVADLLKIAL 201 >gi|83312763|ref|YP_423027.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947604|dbj|BAE52468.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 153 CYQVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 QV+ ++ + L +RE L L G S EIA LG++V TV + + Sbjct: 130 ATQVMLRHIQSDADTVAPPPSVLGKREREVLVLLAGGLRSAEIAASLGIAVGTVEVHRRN 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL I A+ G I Sbjct: 190 IKQKLGMNRTADLIRYAVHEGLI 212 >gi|86140863|ref|ZP_01059422.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella blandensis MED217] gi|85832805|gb|EAQ51254.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella blandensis MED217] Length = 208 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 159 DFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 D + S+ +++ LT+R+ L+L G TS EIA++L + VHTV+ + + L Sbjct: 130 DLRAFEENHSATSKSGLLTKRQLEILRLIAQGKTSREIADELFIGVHTVDTHRKNMMRIL 189 Query: 217 DAVNRIQAIAKAIRF 231 + + + + A+ Sbjct: 190 ELKGKGELLRYALDR 204 >gi|148547271|ref|YP_001267373.1| response regulator receiver protein [Pseudomonas putida F1] gi|148511329|gb|ABQ78189.1| response regulator receiver protein [Pseudomonas putida F1] Length = 265 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 31/257 (12%), Positives = 76/257 (29%), Gaps = 35/257 (13%) Query: 6 LTGKKSSSLQELSPRL--HLIQNRIKA--RNFALYTINSALDFPRRQQLICELHNYDLDS 61 +T +++ L + + + + A R+ + ++ A F Q + + Y+ Sbjct: 1 MTKDEANELAAVIEAIGSEQLGPALDAWLRSKLTFDMSCAYLFQFNQPALLVHNGYNRTV 60 Query: 62 GDI---PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV------RLEGGL 112 + + D F + +W+ + S ++ + Sbjct: 61 TERTLNAYVRGGYLLDPFYVACVNEHPSGLWRMSELAPDCFFSSGFAISKDIHPCVSSDY 120 Query: 113 L---PFAGIAFPVRLGFHKNGYVIF---TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 G P+R ++ + +F +++ V L Sbjct: 121 GTAVDEVGFIIPLRPRLAIVYSLMRNHGSGDFGAGEMDLLAAMSPLLASVFGQHCRLRYA 180 Query: 167 RSSAARN----------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A LTE + +L G+++ IA +L +S TV + Sbjct: 181 DILRAAPEGVVLEDAFVEILQGQLTETQRLIAKLLLQGHSNASIARQLNISDGTVKVHKH 240 Query: 211 SATVKLDAVNRIQAIAK 227 + +L+ + + Sbjct: 241 NIYQRLEISSNAELFRL 257 >gi|317057939|gb|ADU90664.1| putative LuxR family two component transcription regulator [Collimonas sp. MPS11E8] Length = 210 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L++RE L+L G + E AE+L +S TV+ + K++ N ++ Sbjct: 139 SSDQRPPHELLSDREFHILRLLVRGNSVNEAAEELSISNKTVSTHKARLMQKMNFQNNVE 198 Query: 224 AIAKAIRFGYI 234 + A+ + I Sbjct: 199 LVRYAVTYNLI 209 >gi|294813789|ref|ZP_06772432.1| two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|294326388|gb|EFG08031.1| two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] Length = 224 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H ++ L+ RE L L G+G ++ + +L +S TV Y+ Sbjct: 138 HVVDQLATGHAASRNERARERVAQLSARERDVLSLLGEGLSNADAGRRLHMSEATVKTYV 197 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL+ NR+QA A G Sbjct: 198 SRILAKLECENRVQAALLARDAGL 221 >gi|226362416|ref|YP_002780194.1| serine/threonine protein kinase [Rhodococcus opacus B4] gi|226240901|dbj|BAH51249.1| putative serine/threonine protein kinase [Rhodococcus opacus B4] Length = 1087 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G + + A + + + + + T+RE L +G Sbjct: 980 RGAMTEQAFAAAHRKGEAFGFDAAVAYALGEQVSAASTSAGPSPKPTKREREVAALIAEG 1039 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T++EIA +L +S T ++ KL +R Q A + Sbjct: 1040 LTNKEIAARLVISPRTAQGHVEHLLTKLGFNSRAQIAAWVVE 1081 >gi|212640294|ref|YP_002316814.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561774|gb|ACJ34829.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 199 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S LT E LQ+ D TS +I+E+L +S T+ +L S KL ++R Sbjct: 128 SETMYSTKHGLTNIEIDILQMLADDQTSVQISERLKISKRTMERHLSSIFEKLGVLSRTG 187 Query: 224 AIAKAIRFGYI 234 A+A+A+R I Sbjct: 188 AVAEALRLQLI 198 >gi|260904164|ref|ZP_05912486.1| two component transcriptional regulator, LuxR family protein [Brevibacterium linens BL2] Length = 222 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE + G T+ ++A L +S TV +L KLD R+Q Sbjct: 158 PDPLEPLTTREREIAEAVAQGMTNAQVARALFVSTATVKTHLARIFYKLDVSTRVQLALL 217 >gi|77460779|ref|YP_350286.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384782|gb|ABA76295.1| putative GerE familyregulatory protein [Pseudomonas fluorescens Pf0-1] Length = 266 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 54/212 (25%), Gaps = 27/212 (12%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 + SA P+ + D F +++ + Sbjct: 47 LFSADRHPQVFAECPGADGSPDQLFQDYLRGLYLL-DPFYIACREQSRTGLYRLSEVAPE 105 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 + R + I F +L + E I V+ Sbjct: 106 HFELTEYYQRYFRLNVVADEIQFNCQL-EGDRTLCLSLGSQQRFTGEQIALLSLIQPWVL 164 Query: 158 T-----------DFLELFKKRSSA--------------ARNLTERETSCLQLAGDGYTSE 192 + + L + LT RE +L G +S+ Sbjct: 165 GLLRQRLPYEINETVALAPAPAQPDWRVQLEASVQQLKGAQLTARELDVGRLMLSGCSSK 224 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 EIA KL +SV TV + KL ++ + Sbjct: 225 EIARKLEISVETVKVHKKHMYSKLGIKSQSEL 256 >gi|83745854|ref|ZP_00942911.1| transcriptional regulator/response regulator LuxR family [Ralstonia solanacearum UW551] gi|207742983|ref|YP_002259375.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|300703908|ref|YP_003745510.1| two component transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] gi|83727544|gb|EAP74665.1| transcriptional regulator/response regulator LuxR family [Ralstonia solanacearum UW551] gi|206594380|emb|CAQ61307.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|299071571|emb|CBJ42895.1| two component transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] Length = 210 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176 P+ + K G V F + E +++ +A LT Sbjct: 97 VPMAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARTEDSAAREQKAALDLLSRLTT 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209 >gi|91978329|ref|YP_570988.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91684785|gb|ABE41087.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 309 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 60/200 (30%), Gaps = 22/200 (11%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 ++ A + ++ + + + P D Sbjct: 117 EMLARIRVHLGNARLSQSARAALDVSGRFLLAVDRLGKVLWATPQAQKLLAADGVSTEGF 176 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 LP W E+ +G+A P + ++ L L Sbjct: 177 RLDLPKPWLDWLEQ------------------LHSGLAQP----KTPMKASLLRNDELRL 214 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + A+ ++ D + + LT RE+ L G T+ +IA+ LGLS Sbjct: 215 QYMGKLGANEFLLRLARDTSTDSPREFATEFGLTSRESEVLAWLSKGKTNRDIAQILGLS 274 Query: 202 VHTVNAYLGSATVKLDAVNR 221 TV+ +L KL NR Sbjct: 275 PRTVDKHLEQIYAKLGVENR 294 >gi|310659584|ref|YP_003937305.1| hypothetical protein CLOST_2283 [Clostridium sticklandii DSM 519] gi|308826362|emb|CBH22400.1| protein of unknown function [Clostridium sticklandii] Length = 568 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + + LT RE LA G + EI+EKL +S +TV +L S KLD Sbjct: 499 LRQEYGETFPSD-LTAREKEVAILASKGLRNTEISEKLMISENTVKYHLRSIFQKLDVDR 557 Query: 221 R 221 R Sbjct: 558 R 558 >gi|298372989|ref|ZP_06982979.1| DNA-binding response regulator, LuxR family [Bacteroidetes oral taxon 274 str. F0058] gi|298275893|gb|EFI17444.1| DNA-binding response regulator, LuxR family [Bacteroidetes oral taxon 274 str. F0058] Length = 212 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE + A G + +EIA+K+ +S+ TV+ + + K + + A+ G I Sbjct: 151 TAREREVMLYAASGLSGKEIADKMNISLRTVDKHKNNIFTKFGFKTSMDMVNFAVHHGII 210 >gi|255693676|ref|ZP_05417351.1| transcriptional regulator [Bacteroides finegoldii DSM 17565] gi|260620493|gb|EEX43364.1| transcriptional regulator [Bacteroides finegoldii DSM 17565] Length = 259 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 8/228 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNF-ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 SL E++ +I + +++ A++ L ++ + + + D D I + Sbjct: 34 IHSLTEINGGCAVISDLSNRKSYIAVHPWAHFLGLTPKEAALSVIDSMDEDC--IYRRI- 90 Query: 70 ETYGDDFLFHFNS---GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D S + + +G + + Sbjct: 91 -HPEDLVEKRLLEYQFFQKTFSMSSEERLKYRGRCRIRMMNEKGVYQYIDNLVQIMENTP 149 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + ++IF L + + +E+ L+ERE L+ Sbjct: 150 SGSVWLIFCLYTLSADQRTEQGIYPTITHMERGEVEMLFLSEEHRNILSEREKEILRCIR 209 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S+EIA L +SV+TVN + + KL N I+A A + Sbjct: 210 KGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKLL 257 >gi|160885164|ref|ZP_02066167.1| hypothetical protein BACOVA_03162 [Bacteroides ovatus ATCC 8483] gi|156109514|gb|EDO11259.1| hypothetical protein BACOVA_03162 [Bacteroides ovatus ATCC 8483] Length = 259 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 8/228 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNF-ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 SL E++ +I + +++ A++ L + + + + D D I + Sbjct: 34 IHSLTEINGGCAVISDLSNRKSYIAVHPWAHFLGLTPEEAALSVIDSMDEDC--IYRRI- 90 Query: 70 ETYGDDFLFHFNS---GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D S + + +G + + Sbjct: 91 -HPEDLVEKRLLEYQFFQKTFSMSSEERLKYRGRCRIRMMNEKGVYQYIDNLVQIMENTP 149 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + ++IF L + +E L+ERE L+ Sbjct: 150 SGSVWLIFCLYTLSADQRTEQGICPTITHMERGEVETLFLSEEHRNILSEREKEILRCIR 209 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S+EIA L +SV+TVN + + KL N I+A A + Sbjct: 210 KGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKLL 257 >gi|161524306|ref|YP_001579318.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350938|ref|YP_001946566.1| putative signal transduction response regulator [Burkholderia multivorans ATCC 17616] gi|221198444|ref|ZP_03571490.1| transcriptional regulatory protein FixJ [Burkholderia multivorans CGD2M] gi|221208607|ref|ZP_03581608.1| transcriptional regulatory protein FixJ [Burkholderia multivorans CGD2] gi|221214793|ref|ZP_03587762.1| transcriptional regulatory protein FixJ [Burkholderia multivorans CGD1] gi|99652803|dbj|BAE94656.1| response regulator [Burkholderia multivorans] gi|160341735|gb|ABX14821.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189334960|dbj|BAG44030.1| putative signal transduction response regulator [Burkholderia multivorans ATCC 17616] gi|221165332|gb|EED97809.1| transcriptional regulatory protein FixJ [Burkholderia multivorans CGD1] gi|221171598|gb|EEE04044.1| transcriptional regulatory protein FixJ [Burkholderia multivorans CGD2] gi|221182376|gb|EEE14777.1| transcriptional regulatory protein FixJ [Burkholderia multivorans CGD2M] Length = 212 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 P+ + K G + F E E+ + ++ + ++R++ LT R Sbjct: 97 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207 >gi|13475464|ref|NP_107028.1| two-component regulator [Mesorhizobium loti MAFF303099] gi|14026216|dbj|BAB52814.1| two-component regulator [Mesorhizobium loti MAFF303099] Length = 223 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +E + + + + LT+RE LQL G+G +++EIA L +SV TV ++ + KL Sbjct: 137 MERNTRPAESTKALTQREGEVLQLIGNGLSNKEIALDLSVSVATVKHHVHNILQKLKLPR 196 Query: 221 RIQAIAKAIRFGYI 234 R QA+ + +I Sbjct: 197 RTQAMRRVREAPWI 210 >gi|297158227|gb|ADI07939.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 249 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G+G + +IAE++GL+ TV ++ + KL VNR+QA A R G Sbjct: 152 LTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRALLAKLGGVNRVQAAIVADRAGL 211 Query: 234 I 234 + Sbjct: 212 L 212 >gi|294632015|ref|ZP_06710575.1| two-component system response regulator [Streptomyces sp. e14] gi|292835348|gb|EFF93697.1| two-component system response regulator [Streptomyces sp. e14] Length = 219 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + T + A + R L+ RE L+L Sbjct: 110 AGGVKGYVVTGTRTNVGLPARPGAAPIGAARLHRRPPGAPSHPGGYRELSGREVEVLRLV 169 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++ I +GLS TV ++L KL +R +A A+R G I Sbjct: 170 AEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 218 >gi|226355253|ref|YP_002784993.1| LuxR family transcriptional regulator [Deinococcus deserti VCD115] gi|226317243|gb|ACO45239.1| putative transcriptional regulator, LuxR family protein [Deinococcus deserti VCD115] Length = 762 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 75/258 (29%), Gaps = 34/258 (13%) Query: 9 KKSSSLQELSP-----------RLHLIQNRIKARNFALYTIN-----SALDFPRRQQLIC 52 + ++SL +L L + +A +A + D R L+ Sbjct: 504 QDAASLDQLRTNSAYAMNNSVFSLLELGQYDQALGYATSARDQLLKLGHHDAETRNTLVG 563 Query: 53 ELHNYDLDSGDIPNILIETYGDDFLF-----HFNSGLLPI--IWQSIQEETVIESSGQLS 105 H + + D L H + + + ++ + + Sbjct: 564 HAHYHLGRWLAA-AESYLSSLDFSLRRGYWVHARNAARGFGMVVAATGDDALAVRLTAFA 622 Query: 106 VRLEGGLLPF------AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 RL A + + + Y E E A A Q + D Sbjct: 623 DRLSLPHHSRYIESMQAQVLSQLHDRLGEVAYQQAWREGAQWTPEEARRAAAAFAQTLKD 682 Query: 160 FLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + A LT RE L L G+ IA+ L +S T + ++G+ K Sbjct: 683 METPSAPTHAPAALDTPELTTREREVLILLVQGHPDRRIAKLLNISPGTASKHVGNMLGK 742 Query: 216 LDAVNRIQAIAKAIRFGY 233 L NR+ A+ G Sbjct: 743 LGLRNRVDLARWALERGI 760 >gi|187924385|ref|YP_001896027.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715579|gb|ACD16803.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 220 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 11/146 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG------FHKNGYVIFTSEFLMLANEV 145 + ES L G L + K G V F + N+ Sbjct: 66 LDVRLRGESGLAFQQELAGSGLHMPILFITAHGDIEMTVKAMKAGAVDFIPK--PFRNQD 123 Query: 146 IIEAHGACYQVITDFLELFKK---RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +I+A + + L++ + +A +LT RE + G +++IA ++ LS Sbjct: 124 LIDAVDQALKRDRERLDVEQANGALRAAYESLTPREKEVMGFVVMGLMNKQIASEMHLSE 183 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228 TV + G A K+ A + + KA Sbjct: 184 ITVKIHRGQAMKKMAARSVADLVRKA 209 >gi|127514434|ref|YP_001095631.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126639729|gb|ABO25372.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 198 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL L ++E L+LA +G +S EIA L ++ TV YL A KL+A NR Sbjct: 126 ELAIMAVGEQDPLNDKERRALRLASEGRSSAEIAASLFIAEGTVRNYLSEAIAKLNASNR 185 Query: 222 IQAIAKAIRFGYI 234 I A A + G++ Sbjct: 186 IDAARIAKQKGWL 198 >gi|329965227|ref|ZP_08302157.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] gi|328523247|gb|EGF50347.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] Length = 204 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE + G T++ IA+KL LS+HTV + + KL + AI Sbjct: 134 ALSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNK 193 Query: 233 YI 234 + Sbjct: 194 LV 195 >gi|239933771|ref|ZP_04690724.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 188 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + L +++ S A+ LT RE ++L +G Sbjct: 85 QAVLAAARGDGDLPADLLGRLIRQMGT--KSPNAAVGNSSYPAQRLTPREVDVMRLVAEG 142 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + +IA KL S T+ + T +L+ NR A+A A+R GYI Sbjct: 143 FGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGYI 188 >gi|254514035|ref|ZP_05126096.1| two component transcriptional regulator, LuxR family [gamma proteobacterium NOR5-3] gi|219676278|gb|EED32643.1| two component transcriptional regulator, LuxR family [gamma proteobacterium NOR5-3] Length = 219 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 8/126 (6%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 ++ +VR A ++ + L + I +GA Q + Sbjct: 84 NTHAETVRRAIDHGAAAFLSKSSSTDTMVQCIEQVLAGERGLHPGLDISVNGASLQALDV 143 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L +LT ++ + +G +++IA +LG+ T+ A++ KL Sbjct: 144 ADALA--------SLTPQQFRVASMLVEGLLNKQIAYELGVKEATIKAHMTEVFRKLGVQ 195 Query: 220 NRIQAI 225 +R QA+ Sbjct: 196 SRTQAV 201 >gi|188993657|ref|YP_001905667.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167735417|emb|CAP53632.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 274 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 198 RLRDLTPQQFRVLQMLGVGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 256 >gi|75812851|ref|YP_320468.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705607|gb|ABA25279.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 262 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTE---RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +I + + L++ +E + L+LA G + EIA + +S TV +Y Sbjct: 135 INRILIDNLRSNDTADRDSLDLLSDFSNKEITVLKLAAGGMKNNEIANVMYVSEGTVRSY 194 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L ++ +KL +R+ AI +AIR G + Sbjct: 195 LHNSFIKLGVKDRLNAIREAIRLGIL 220 >gi|17158788|ref|NP_478299.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134737|dbj|BAB77295.1| alr7652 [Nostoc sp. PCC 7120] Length = 262 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTE---RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +I + + L++ +E + L+LA G + EIA + +S TV +Y Sbjct: 135 INRILIDNLRSNDTADRDSLDLLSDFSNKEITVLKLAAGGMKNNEIANVMYVSEGTVRSY 194 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L ++ +KL +R+ AI +AIR G + Sbjct: 195 LHNSFIKLGVKDRLNAIREAIRLGIL 220 >gi|325068150|ref|ZP_08126823.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Actinomyces oris K20] Length = 226 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS+A LT+RE ++ +G + E A +L +S TV ++ + KL NR Q Sbjct: 158 RSTAFAALTDREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRTQVAV 217 Query: 227 KAIR 230 R Sbjct: 218 MYYR 221 >gi|302542477|ref|ZP_07294819.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460095|gb|EFL23188.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 8/119 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173 +R G + L+ A + G +T L RS A Sbjct: 106 LRAGAAGFLLKDSDAARLVEAVRTVARGEGLIAPAVTRRLIKEFARSGTATTADPSVLAV 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G G ++ EIA L ++ TV ++ KL+ +R+QA A G Sbjct: 166 LTPREREVLGCLGRGMSNAEIATHLTMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 224 >gi|257063010|ref|YP_003142682.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790663|gb|ACV21333.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 505 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 2/108 (1%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G F +G V T M + + + + + L+ Sbjct: 385 GFLFEFSDRTKSDGDVSPTVADRMRDPDPRDM--EVSVVIFHEAVNRRCADVAGEYGLSN 442 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 RE L G + +E+A+KL +S TV ++ K+ R + Sbjct: 443 REEEVLVHIMQGNSIQEVADKLFISPGTVKTHINHIYRKMGVTRRYEL 490 >gi|209520820|ref|ZP_03269564.1| cyclic nucleotide-binding protein [Burkholderia sp. H160] gi|209498735|gb|EDZ98846.1| cyclic nucleotide-binding protein [Burkholderia sp. H160] Length = 344 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT R+ L L G +++ IA +L +S T+ +L + L+ +R +A Sbjct: 150 PDPHLHLTPRQIEVLALLARGRSNKMIARQLDVSEATIKTHLTTIFKALNVSSRGEASIV 209 Query: 228 AIRF 231 A R Sbjct: 210 AARM 213 >gi|254383319|ref|ZP_04998671.1| AbsA2 [Streptomyces sp. Mg1] gi|194342216|gb|EDX23182.1| AbsA2 [Streptomyces sp. Mg1] Length = 219 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 32/84 (38%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + L+ERE L L G+G ++ + +L +S TV Y+ Sbjct: 136 HVVDQLASGQAAGRGEAARRRVAELSERERGVLALLGEGLSNADAGRRLHMSEATVKTYV 195 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL NR+QA A G Sbjct: 196 SRILAKLGCENRVQAALLARDAGL 219 >gi|146318597|ref|YP_001198309.1| DNA-binding response regulator, [Streptococcus suis 05ZYH33] gi|146320797|ref|YP_001200508.1| DNA-binding response regulator [Streptococcus suis 98HAH33] gi|253751721|ref|YP_003024862.1| response regulator protein [Streptococcus suis SC84] gi|145689403|gb|ABP89909.1| DNA-binding response regulator, putative [Streptococcus suis 05ZYH33] gi|145691603|gb|ABP92108.1| DNA-binding response regulator, putative [Streptococcus suis 98HAH33] gi|251816010|emb|CAZ51628.1| response regulator protein [Streptococcus suis SC84] Length = 199 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L G+G ++IA+ L +S T+ ++ + KL+ + ++A+ KA + Sbjct: 136 DELTEREKEILIHLGNGEKRKDIAKSLYISDRTLTNHIQNILEKLEVDSTLKAVIKAQKL 195 Query: 232 GYI 234 GYI Sbjct: 196 GYI 198 >gi|86356681|ref|YP_468573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280783|gb|ABC89846.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 86 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 32/84 (38%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 S+ +T RE + G T+ EI LG+S TVN ++ Sbjct: 2 RRGDHAARAHDRRTGAMSAVTSAVTPREREIIGWMAQGKTAAEIGTILGISPITVNTHIS 61 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +A KL +A A+R G I Sbjct: 62 NAKAKLGVFKETALVAAALRNGII 85 >gi|26988850|ref|NP_744275.1| LuxR family DNA-binding response regulator [Pseudomonas putida KT2440] gi|24983655|gb|AAN67739.1|AE016405_2 DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440] Length = 219 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + VI L K+ +A NLT R+ L+L G ++ EIA LGLS+ TV Sbjct: 129 AIAHTVINQALRHTKQGKPSAGERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVET 188 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +L + + A+R I Sbjct: 189 HRSQIMKRLQIHDVAGLVLFAVREKII 215 >gi|332970194|gb|EGK09188.1| hypothetical protein HMPREF9374_3042 [Desmospora sp. 8437] Length = 223 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 1/115 (0%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLT 175 G + G T+E + V +I L + LT Sbjct: 89 GYLQFLERGAGGIVLQKNTTELVRAVQVVRNGGWYFSSDLIERIHHLIHGNLHPHKLPLT 148 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E +Q T+++IAE L +S TV ++ SA KL +R+ K ++ Sbjct: 149 AMEMKVVQELLKDKTNQQIAEALYVSRRTVEYHIASAIQKLGVNSRVGLAVKIMQ 203 >gi|308050738|ref|YP_003914304.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307632928|gb|ADN77230.1| two component transcriptional regulator, LuxR family [Ferrimonas balearica DSM 9799] Length = 215 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 17/180 (9%) Query: 61 SGDIPNILIETYGD---DFLFHFNSGLLPIIWQSIQEETVIE--------SSGQLSVRLE 109 D +G P + + ++ + Sbjct: 24 LRRYYPDCALAEADGAEPLNQALRTGPEPDLLLLDLHIPGAKGFQTLLQIREQYPALPVV 83 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSE---FLMLANEVIIEAHGACYQVITDFLELFKK 166 G+V + L V+ A + EL + Sbjct: 84 VISGQEDDATVAQARQCGAAGFVPKSRPVEAMLDAVAAVLDGAQWWPQSA--EGGELDEM 141 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L+ R+ L L +G +++IA +LGLS TV A+ + +KL R QA+ Sbjct: 142 AV-RIASLSPRQHRILMLFAEGLLNKQIATRLGLSEATVKAHASAIFLKLGVRTRTQAVI 200 >gi|298250381|ref|ZP_06974185.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548385|gb|EFH82252.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 908 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L+ +E L+L G + EIA +L +SV+TV +L KL+ +R +A +A+ Sbjct: 844 PSEALSVQEQRVLRLFVAGLSKPEIANELIISVNTVKTHLSRIYRKLNVTSRAEA-REAV 902 Query: 230 RF 231 R Sbjct: 903 RR 904 >gi|284041874|ref|YP_003392214.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946095|gb|ADB48839.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 981 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 I + D + A +T RE L L +G T+ +IAE Sbjct: 887 REQPLRGAIEALGRRARVALGDDAPPPDRI--AELGITAREREVLTLLAEGRTNRQIAET 944 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++ T + ++ KLDA NR +A A A R G Sbjct: 945 LVIAEKTASVHVSRILAKLDARNRGEAAAIARRLGL 980 >gi|226944589|ref|YP_002799662.1| Response regulator GacA [Azotobacter vinelandii DJ] gi|226719516|gb|ACO78687.1| Response regulator GacA [Azotobacter vinelandii DJ] Length = 209 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 7/122 (5%) Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172 FP RL GY+ + + ++ A + H I L L ++ S Sbjct: 84 FPTRLMQAGAAGYLTKGAALDEMVQAIRQVFAGHRYISPQIAQQLALKAFQPQQSGSPFD 143 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE + + + I++KL LS TVN Y KL + ++ A+R G Sbjct: 144 LLSEREIQIALMIANCEKVQSISDKLCLSPKTVNTYRYRIFEKLSINSDVELALLAVRHG 203 Query: 233 YI 234 + Sbjct: 204 MV 205 >gi|254381845|ref|ZP_04997208.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340753|gb|EDX21719.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 205 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 4/168 (2%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 GD+ L + + + I+ + S+R + + R G+ + Sbjct: 38 ARGDEVLAAARAHDVNVALLDIEMPGMTGIEAAASLRTAVPHVKIVILTTFGRPGYLRGA 97 Query: 131 YVIFTSEFL--MLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 S FL + +A + + D + A LT+RE L+ A Sbjct: 98 MEAGASAFLVKDAPAAQLADAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAE 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E+AE+L LS TV YL +A KL + NR +A+ A G++ Sbjct: 158 FGATNAELAERLHLSPGTVRNYLSTAIQKLASRNRAEAVRVAREKGWL 205 >gi|297584895|ref|YP_003700675.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143352|gb|ADI00110.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 219 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ A L++RE L+ GYT +EI+ +L +S+ TV+ Y K+ + + + Sbjct: 149 SNQAVELSQREQEVLKYIALGYTQKEISTELFISIKTVDTYKKRVMEKIGSKKKSALVRY 208 Query: 228 AIRFGYI 234 A++ I Sbjct: 209 ALKHNII 215 >gi|124003450|ref|ZP_01688299.1| transcriptional regulator, LuxR family protein [Microscilla marina ATCC 23134] gi|123991019|gb|EAY30471.1| transcriptional regulator, LuxR family protein [Microscilla marina ATCC 23134] Length = 235 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE + L GY + EI E+L +S TV + + KL+ + I A F Sbjct: 174 SLTPREKEIITLLALGYQNNEIGEQLFISKATVEQHRKNLKRKLEIRRFVDLIRFAQAFD 233 Query: 233 YI 234 I Sbjct: 234 LI 235 >gi|94970529|ref|YP_592577.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552579|gb|ABF42503.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 228 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 155 QVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 Q++ + + + LT RE + L +G + EIA +L +S TV +L Sbjct: 145 QLLNELAASSRTEAPRNDFGLTPRELEIVALVTEGCGNREIATRLTISEETVKRHLTHIF 204 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 K+ R++ A+ Sbjct: 205 DKVGMSTRLELALFALDHNL 224 >gi|91779308|ref|YP_554516.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691968|gb|ABE35166.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 218 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++E + L S LT R Sbjct: 97 VTQAVRAGASGYVLKDSPATEIIQAIGAVLEGKSFFSAGLGARLIQASATQSPVERLTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ LSV TV + + KLD + + I A+ Sbjct: 157 ERDILDALAEGLSSKQIAQRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210 >gi|324999341|ref|ZP_08120453.1| transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 595 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 2/153 (1%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144 P W + G+L + G + G + + Sbjct: 10 RPSAWSGNAFTVQVRPDGRLGLADRGDHADVPADLRRAAGAMGRAGLEHCRFHWRSPVSG 69 Query: 145 VIIEAHGACY-QVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + D +EL L+ RE L + G ++ EIA +L ++ Sbjct: 70 LFCRVTLTARTESGFDHVELSGDPVERLPAGLSARELEILTMLVVGPSNAEIAGELRITQ 129 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 T ++ KL R A A+ G +C Sbjct: 130 RTAATHVTHLMQKLGTPTRTAAATYALDTGLLC 162 >gi|120404725|ref|YP_954554.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119957543|gb|ABM14548.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 539 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 31/67 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G T+ ++AE+L LS TV+ +L + KL R A Sbjct: 469 APTPGGLTRRELDVLTRIARGATNRQVAEQLHLSDKTVSRHLANIYAKLGVSTRTAAANW 528 Query: 228 AIRFGYI 234 A + G + Sbjct: 529 AFQQGVL 535 >gi|83952296|ref|ZP_00961028.1| putative nitrate/nitrite response regulator protein [Roseovarius nubinhibens ISM] gi|83837302|gb|EAP76599.1| putative nitrate/nitrite response regulator protein [Roseovarius nubinhibens ISM] Length = 232 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 30/53 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L A G ++ IA+KLGLSVHTV ++ KL NR +A Sbjct: 166 DRLTDREFEVLSCAAQGNQNKIIADKLGLSVHTVKLHMHHVIAKLGVHNRTEA 218 >gi|304395728|ref|ZP_07377611.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304357022|gb|EFM21386.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 193 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 ++ + + A V+ + LT++E L L G ++ +IA +L +S Sbjct: 104 SQRMAQLLSAILAVLGGQTAFPEMDDEPELPLTQKERQILALLASGLSNLQIAAQLHISN 163 Query: 203 HTVNAYLGSATVKLDAVNRIQAI 225 TV+ + + K A + ++ Sbjct: 164 KTVSTHKKNILEKTGARSVVELA 186 >gi|254390125|ref|ZP_05005345.1| two component response regulator MppU [Streptomyces clavuligerus ATCC 27064] gi|294817119|ref|ZP_06775761.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326445989|ref|ZP_08220723.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703832|gb|EDY49644.1| two component response regulator MppU [Streptomyces clavuligerus ATCC 27064] gi|294321934|gb|EFG04069.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 209 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 LA +V+I +++ +R+S LT RE +L DG T+ EI Sbjct: 117 GVRAALAGDVLISPQLTA-RLLQRATAPDDRRTSP---LTAREEEIARLVADGLTNAEIG 172 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E L +S T ++ + KL A NR+ A Sbjct: 173 EALVISPGTAKTHVANVQTKLGARNRVGIAAW 204 >gi|186474725|ref|YP_001863696.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184198684|gb|ACC76646.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 213 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 43/110 (39%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR G ++ A +++ + + L LT RE Sbjct: 100 VRAGARGYLLKDSPGAEIIRAIGAVLDGKTFFSEGLGARLIQASTLRDPTERLTPRERDI 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L +G +S++IA++ GLSV TV + + KL+ + + I A+ Sbjct: 160 LDQLAEGLSSKQIAQRSGLSVRTVETHRQNLKRKLEIDGQAELIKFAVEH 209 >gi|70729573|ref|YP_259311.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens Pf-5] gi|68343872|gb|AAY91478.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens Pf-5] Length = 221 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 161 LELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + S LT ++ L+ G ++++IA L ++ TV A++ + KL+ Sbjct: 140 RRSSETPSFPPELLQALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLN 199 Query: 218 AVNRIQAIAKA 228 NR+QAI A Sbjct: 200 VHNRVQAILSA 210 >gi|330446242|ref|ZP_08309894.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490433|dbj|GAA04391.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + + L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFASNSENPFKELSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 ISGDVELTHLAIRHGML 209 >gi|323137867|ref|ZP_08072942.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322396870|gb|EFX99396.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 273 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 52/98 (53%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G F S+ + + A A ++ F+++ K RS NLT RE S L G G+ Sbjct: 141 GGAGFVSKRAPPERLLDVLAAVAAGDMVFPFVDIRKMRSDPLENLTLRERSLLSALGSGH 200 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+ ++A+ G+S++T+ +L + KL+ NR QAIA Sbjct: 201 TNSQLAKDFGVSINTIKFHLRNLFEKLEVRNRAQAIAL 238 >gi|302039255|ref|YP_003799577.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300607319|emb|CBK43652.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L L ++ + LT R+ LQL +G T+++IA +L +S TV + Sbjct: 128 LIAKDLLDVLLTLGAGQAQQRKTLTFRQREVLQLLAEGRTAKDIALRLKISTRTVEFHKA 187 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +L+ + I A+ G+I Sbjct: 188 QLMEQLNLHTTAELIKYALTHGFI 211 >gi|288916240|ref|ZP_06410620.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288352431|gb|EFC86628.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 189 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 6/138 (4%) Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161 + AG + + + + A T Sbjct: 50 TSFDLDEYVFAGLRAGASGFLLKDAPPEDLLTAIRVVAAGDALLSPAATRRLIDRFTATP 109 Query: 162 ELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + LT+RE L G ++ EIA L L+ T+ ++ + K Sbjct: 110 PAEGDAPEPSPSRQLLSRLTDRERDVLTRVARGMSNAEIAADLVLATSTIKTHMTNLLAK 169 Query: 216 LDAVNRIQAIAKAIRFGY 233 + +R Q + A G Sbjct: 170 TSSRDRTQLVIFAYESGL 187 >gi|290956373|ref|YP_003487555.1| response regulator [Streptomyces scabiei 87.22] gi|260645899|emb|CBG68990.1| putative response regulator [Streptomyces scabiei 87.22] Length = 299 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 8/162 (4%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + + E++++ ++ G + + + + Sbjct: 137 RTVGAALDAARDLEQSLVVRDEARNLLATARAGTAHGNSAGAWEEVREAHGALRALAPRI 196 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSE 192 + E C ++ AA LT RE L G T+ Sbjct: 197 DDPGLRAELLRVCGRLAGASASGEDAAGPAAPVRDGGERVALTAREVDVLACVAMGATNA 256 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++LGL TV AYL SA KL A R++A+ A R G + Sbjct: 257 VAAQRLGLRPETVKAYLRSAMRKLGAHTRLEAVVAARRAGLL 298 >gi|258541258|ref|YP_003186691.1| LuxR family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632336|dbj|BAH98311.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01] gi|256635393|dbj|BAI01362.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-03] gi|256638448|dbj|BAI04410.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-07] gi|256641502|dbj|BAI07457.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-22] gi|256644557|dbj|BAI10505.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-26] gi|256647612|dbj|BAI13553.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-32] gi|256650665|dbj|BAI16599.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653656|dbj|BAI19583.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-12] Length = 299 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT RE L G T+ +IAE L +S TVN +L + +K+ NR A A+ ++ Sbjct: 238 NLTAREAEVLFWIAKGKTNRDIAEILSISHRTVNKHLEQSYIKIGVENRAAATARVLQA 296 >gi|159037162|ref|YP_001536415.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157915997|gb|ABV97424.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 212 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A + +++ +V+ ++ ++LTE+E L+ +G T+ EIA K Sbjct: 116 RRVAAGQSLLDP-AITTRVLERIRSGVEQ-PRELKSLTEQERRILEYVAEGLTNREIAGK 173 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ TV Y+ S KL R QA A R Sbjct: 174 MFLAEKTVKNYVSSMLAKLGLERRTQAAVLATRL 207 >gi|89073041|ref|ZP_01159588.1| response regulator [Photobacterium sp. SKA34] gi|90578924|ref|ZP_01234734.1| response regulator [Vibrio angustum S14] gi|89051259|gb|EAR56715.1| response regulator [Photobacterium sp. SKA34] gi|90439757|gb|EAS64938.1| response regulator [Vibrio angustum S14] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + + L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFASNSENPFKELSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 ISGDVELTHLAIRHGML 209 >gi|329894383|ref|ZP_08270253.1| Transcriptional regulator, LuxR family [gamma proteobacterium IMCC3088] gi|328923179|gb|EGG30502.1| Transcriptional regulator, LuxR family [gamma proteobacterium IMCC3088] Length = 220 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++A +LT ++ + +G +++IA +L + T+ A++ KL +R QA+ Sbjct: 145 DTAAAIASLTPQQLKVASMLVEGLLNKQIAYELNVKEATIKAHMTEIMRKLGVFSRTQAV 204 >gi|327403771|ref|YP_004344609.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319279|gb|AEA43771.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L D YT++ IAE+L LS T+ Y S +KLD N + K + G Sbjct: 151 QLTTREKQVLKLIMDEYTTKRIAEELFLSEKTIENYRSSLMLKLDVTNLTGLVKKTLLLG 210 Query: 233 YI 234 + Sbjct: 211 LL 212 >gi|307729151|ref|YP_003906375.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583686|gb|ADN57084.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 210 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 3/101 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEE 193 + ++ A + H + + D L + +AA L+ERE G + Sbjct: 109 DEIVRAIRAVARGHRYLSEAVADTLADNLDKPAAARPHEALSEREFQIFCKLAAGQIPTQ 168 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE+L LSV TV+ Y K+ N AI+ G I Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209 >gi|86740248|ref|YP_480648.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567110|gb|ABD10919.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 156 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ E AE L + TV Y+ S K+ NR A+ A + G Sbjct: 94 RLTLREMEVLTLVATGCSNVEAAEHLTIRAETVKTYMRSIMRKMGVRNRTAAVHAARQSG 153 Query: 233 YI 234 + Sbjct: 154 LL 155 >gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 241 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A N T RE S LQL +G ++EIA KL S+ V Y+ +K +R + + A+ Sbjct: 176 ALHNFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 235 Query: 230 RFGYI 234 + Sbjct: 236 ENQLV 240 >gi|113971847|ref|YP_735640.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113886531|gb|ABI40583.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 201 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L G T+++I+E + LS+ T+ + KL+ N + + Sbjct: 138 QLTEREQQVLAHVVQGMTNKQISEAMYLSLRTIEVHRAKIMKKLEVSNMAELV 190 >gi|299066090|emb|CBJ37271.1| putative two-component response regulator, transcription regulator, LuxR [Ralstonia solanacearum CMR15] Length = 238 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 29/66 (43%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE S LQL +G T+ ++ L LS T+ Y KL N + A Sbjct: 151 STWETLTARERSVLQLVAEGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVGNVTGLVLAA 210 Query: 229 IRFGYI 234 I G I Sbjct: 211 IGLGLI 216 >gi|296158037|ref|ZP_06840870.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295891805|gb|EFG71590.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 228 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Query: 141 LANEVI-IEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +++ AH D L + +LT RE + G +++IA ++ Sbjct: 119 RDQDMLDAVAHALAGDAERRDALRSVEDLRRCYESLTPREREVMAFVASGLMNKQIAGEM 178 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 GLS TV + G A K+ A + + KA G Sbjct: 179 GLSEITVKIHRGQAMRKMAARSLADFVLKAEALG 212 >gi|291455100|ref|ZP_06594490.1| response regulator [Streptomyces albus J1074] gi|291358049|gb|EFE84951.1| response regulator [Streptomyces albus J1074] Length = 222 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + L +++ + + ++ + LT RE ++L +G Sbjct: 121 AVLAASRGDGDLPADLLGSLLSQVGTLHRGAV---GQQGGPSLGLTPREVDVVRLIAEGL 177 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA KL S TV + T +L NR A+A A+R GYI Sbjct: 178 DTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVAFALREGYI 222 >gi|237746871|ref|ZP_04577351.1| two component transcriptional regulator [Oxalobacter formigenes HOxBLS] gi|229378222|gb|EEO28313.1| two component transcriptional regulator [Oxalobacter formigenes HOxBLS] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTER 177 +R G L+ A + + + + L L ++ + L+ R Sbjct: 93 SIRAGAQGYLTKESAGSQLVTAIKRVASGRPYISMEVAERLALDIMTPEKELPHKQLSNR 152 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + G + +IA +L LSV TV+ + K+D + + + AI + Sbjct: 153 EFEIFNMMASGKSITDIATQLHLSVKTVSTHKSRILAKMDMHSLAEIVQYAIAHNLL 209 >gi|114563476|ref|YP_750989.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114334769|gb|ABI72151.1| two component transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 220 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 23/202 (11%) Query: 46 RRQQLICELHNYDL--DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ 103 R L L N + + + P + + Sbjct: 17 FRNALRLALSNAFEKTQWFEADSAEALQGV------LDQKETPFDLILLDLQMPGSHGYS 70 Query: 104 LSVRLEGGLLPFAGIAFPVR--LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF- 160 + L + + +S F+ + + + A + D Sbjct: 71 TLIHLRTHYPDIPVVVISAHEDINTISRAIHYGSSGFIPKSASMEVLAEALNAVLYGDIW 130 Query: 161 LELFKKRSSAARN-----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 L + + + LT ++ LQ+ +G +++IA G+S T+ A+ Sbjct: 131 LPKGTQIVPVSDDPTDKMANRLSDLTPQQYRVLQMFAEGLLNKQIAYDFGVSEATIKAHA 190 Query: 210 GSATVKLDAVNRIQAIAKAIRF 231 + KL NR QA+ A++ Sbjct: 191 TAIFRKLGVRNRTQAV-IALQQ 211 >gi|114561787|ref|YP_749300.1| transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333080|gb|ABI70462.1| transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] Length = 210 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 T++E L L G T+EE+A++L +SV+TV ++ + K NR Q A A Sbjct: 155 TKKEQQVLSLILHGLTNEEMAKELNISVNTVKMHVQNIYKKTKIKNRGQLFAFA 208 >gi|78066914|ref|YP_369683.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|115352227|ref|YP_774066.1| two component LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|116690160|ref|YP_835783.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|134296321|ref|YP_001120056.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|167586726|ref|ZP_02379114.1| response regulator receiver protein [Burkholderia ubonensis Bu] gi|170703358|ref|ZP_02894143.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170733493|ref|YP_001765440.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|171318540|ref|ZP_02907691.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|172061094|ref|YP_001808746.1| two component LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|254251954|ref|ZP_04945272.1| regulatory protein LuxR [Burkholderia dolosa AUO158] gi|77967659|gb|ABB09039.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] gi|115282215|gb|ABI87732.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] gi|116648249|gb|ABK08890.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|124894563|gb|EAY68443.1| regulatory protein LuxR [Burkholderia dolosa AUO158] gi|134139478|gb|ABO55221.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] gi|169816735|gb|ACA91318.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] gi|170131735|gb|EDT00278.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|171096282|gb|EDT41189.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171993611|gb|ACB64530.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] gi|325527278|gb|EGD04647.1| two component LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 212 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 P+ + K G + F E E+ + ++ + ++R++ LT R Sbjct: 97 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207 >gi|294499414|ref|YP_003563114.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349351|gb|ADE69680.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 212 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ + TERETS + L G +++EI++ L +S TV Y+ S K + Sbjct: 139 AATERESKADMTQFTERETSIMTLIAKGLSNKEISKTLFISEGTVANYISSILSKTGLEH 198 Query: 221 RIQAIAK 227 R Q Sbjct: 199 RTQIAIY 205 >gi|302538489|ref|ZP_07290831.1| two component system response regulator [Streptomyces sp. C] gi|302447384|gb|EFL19200.1| two component system response regulator [Streptomyces sp. C] Length = 226 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L GDG +++EIA +LG+ TV ++G+ K + +R+QA A R G Sbjct: 164 RLTGRERDVLAALGDGLSNQEIAARLGIGTGTVKTHVGAILDKTGSASRVQAALLAHRTG 223 Query: 233 Y 233 Sbjct: 224 L 224 >gi|238023736|ref|YP_002907968.1| hypothetical protein bglu_2g02680 [Burkholderia glumae BGR1] gi|237878401|gb|ACR30733.1| Hypothetical protein bglu_2g02680 [Burkholderia glumae BGR1] Length = 355 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 12/226 (5%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 EL + I A + + D D Sbjct: 129 AELIALMRRITGACGAVQCFYHWFMYDERSGEVSAHQLLIGG-DPAWAQRYVDRHWYLND 187 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK-NGYVI 133 + H P+ S+ G R + P G + Sbjct: 188 PAVAHAQDDTRPLRGSSL-----AMPPGHWLNRQGPLHGMRSHQFHPAHRRDVATVGVLH 242 Query: 134 FTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ E + AH +++ + ++ +A +L RE L+L G Sbjct: 243 VSTAAEPPGGEEALWAHRRPLRGLANELLEWQVLRRRRELAATLSLEARELRALRLVARG 302 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +A +LG++ V + KLD+ + + KA + G + Sbjct: 303 GSARHVAAELGVTERAVYQLFTAINRKLDSEHIKVSANKARQLGLL 348 >gi|227819625|ref|YP_002823596.1| two component transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338624|gb|ACP22843.1| two component transcriptional regulator [Sinorhizobium fredii NGR234] Length = 266 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A T R+ +Q G ++ IA L L TV ++ + KL A NR + Sbjct: 180 EELARPGAGMFTHRQEEVIQELRRGKANKIIAYDLNLHESTVKVHIRNIMKKLGATNRTE 239 Query: 224 AIAKAIRF 231 KA + Sbjct: 240 VAYKASQM 247 >gi|149370972|ref|ZP_01890567.1| two-component response regulator [unidentified eubacterium SCB49] gi|149355758|gb|EDM44316.1| two-component response regulator [unidentified eubacterium SCB49] Length = 400 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 NL+ER+ + L G T++EI L +S +TV +L L NR + Sbjct: 349 NLSERQNQIIVLVKQGKTNKEIGAALFISENTVKYHLKIIYDILGIGNRTEL 400 >gi|186476230|ref|YP_001857700.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184192689|gb|ACC70654.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177 P+ + K G + F E E+ + ++ + ++R++A R LT R Sbjct: 96 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESSSVQQQRAAAERLGKLTAR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206 >gi|23006356|ref|ZP_00048713.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 180 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 5/109 (4%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQV-----ITDFLELFKKRSSAARNLTERETSCLQLA 185 + ++ +L + A V + L + ++ +L+ RE + L+ Sbjct: 38 LEVVIADCAVLPMSFLGRLCLAADPVRAPGPVAALTGLQRADGTSLSSLSSREVNILEGL 97 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++ IA L ++ TV ++ + K+ NR QA A+ G + Sbjct: 98 ALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGIV 146 >gi|295699319|ref|YP_003607212.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438532|gb|ADG17701.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 247 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L + NL+ R+ ++L G+T++ IA LG++ TV +L L Sbjct: 166 LRQMPSLQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARDLGVAEGTVKVHLSVIFRAL 225 Query: 217 DAVNRIQAIAKAIRFGYI 234 NR AI A+ G++ Sbjct: 226 GVHNRSTAI--AVINGWL 241 >gi|260913907|ref|ZP_05920381.1| tetrathionate reductase regulon response regulator [Pasteurella dagmatis ATCC 43325] gi|260631994|gb|EEX50171.1| tetrathionate reductase regulon response regulator [Pasteurella dagmatis ATCC 43325] Length = 192 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+++E L+L GY + +IAE L +SV TV + K+ A + I K + Sbjct: 133 EQLSKKELEILELLIQGYINRQIAETLNISVRTVEVHRSHIMEKMQAQTIAELIYKTAQL 192 >gi|238023585|ref|YP_002907817.1| Two component transcriptional regulator [Burkholderia glumae BGR1] gi|237878250|gb|ACR30582.1| Two component transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 215 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 12/124 (9%) Query: 115 FAGIAFPVR--LGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFK 165 G P+ G + + + + +++ ++ + Sbjct: 73 RRGATLPIIFVSGHGDIPMSVRAMQNGAIDFVEKPYNSQQMLDRVQNAMKLAMQRHAGDR 132 Query: 166 KRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +R +LT RE L+ DG S++IA +L +SV TV+ + S KL + Sbjct: 133 RRLELRQRIESLTAREREVLRGVIDGKGSKKIASELSISVKTVDVHRASIKEKLGVASIA 192 Query: 223 QAIA 226 + Sbjct: 193 SLVR 196 >gi|297560982|ref|YP_003679956.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845430|gb|ADH67450.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 220 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 33/70 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ +A L+ RE G T+ EIA +L +SV TV A++ + KLD NR Q Sbjct: 150 HERARTALARLSPREHEVALAVARGRTNAEIAAQLYMSVATVKAHVSNVLAKLDMDNRTQ 209 Query: 224 AIAKAIRFGY 233 A G Sbjct: 210 IALLAHDAGL 219 >gi|256377313|ref|YP_003100973.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921616|gb|ACU37127.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 208 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++ G + EI + L LS+ TV +L +A K A NR++ A A R Sbjct: 146 LTPRERDVVREVARGLGNREIGDALHLSLSTVKTHLAAAQGKTGARNRVELAAWAFRARL 205 Query: 234 I 234 + Sbjct: 206 V 206 >gi|254515317|ref|ZP_05127378.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3] gi|219677560|gb|EED33925.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3] Length = 203 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 147 IEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + ++ RS LT RE L G GY + E+AE LG+S TV Sbjct: 115 RDLLQRISELGKRVDAQSADRSPRHFEGLTPREEEVALLVGRGYNNRELAEALGVSERTV 174 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 A L S KL +R+Q R Sbjct: 175 KANLTSIFDKLGLRDRVQLALYVNRL 200 >gi|149907604|ref|ZP_01896351.1| transcriptional regulator, LuxR family [Moritella sp. PE36] gi|149809274|gb|EDM69203.1| transcriptional regulator, LuxR family [Moritella sp. PE36] Length = 197 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ R+ S LQL G ++ ++A++L +S TV + S ++A + I A Sbjct: 131 PDKPKLSSRQISVLQLLAQGKSARQVADELFISPRTVEFHKYSIMKLVNAKTSAELIQYA 190 Query: 229 IRFGY 233 + G Sbjct: 191 LNHGL 195 >gi|170738965|ref|YP_001767620.1| two component LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193239|gb|ACA15186.1| two component transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 221 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT ++ L + +G +++IA +L +S TV A++ + KL +R QA+ + R G Sbjct: 153 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIASSRIG 211 >gi|170722540|ref|YP_001750228.1| two component LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169760543|gb|ACA73859.1| two component transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 212 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGACYQVITDF-LELFKKRSSAARNL 174 FP RL + L + I A Q+ L+ F+ + S L Sbjct: 89 FPTRLMQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLALKSFQPQGSPFDAL 148 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE + + I++KL LS TVN Y KL + ++ A+R G + Sbjct: 149 SEREIQIALMIVGCQKVQLISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 208 >gi|111017809|ref|YP_700781.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110817339|gb|ABG92623.1| possible protein kinase/ transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 773 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 6/110 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 R + L + E A + + + LT RE Sbjct: 665 ARGAIGDRAFEAEFGRGLGMRFEE------AAGYALDESGPTAAAVGPGSTPLTRRERQV 718 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L +G T+ IA+KL +S T ++ KL +R Q A I Sbjct: 719 AELVAEGLTNRAIADKLVISQRTAQGHVEHILSKLGFTSRTQIAAWVIEH 768 >gi|16264139|ref|NP_436931.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|307300008|ref|ZP_07579793.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307316639|ref|ZP_07596082.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15140264|emb|CAC48791.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|306897837|gb|EFN28580.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904897|gb|EFN35480.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 259 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 48/212 (22%), Gaps = 27/212 (12%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97 I R+ + Y + + D F ++ I Sbjct: 39 ITVTRYSATRKPEFVKHRGYSDEMVARYLDTYYVF-DPFYAYWRLNRRAGIVPLKSLADD 97 Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 G+ + + G + M ++ + V Sbjct: 98 APKRGRYIAEFLAQSEICDEVGILLEDGDDWCLGIFLDRSTSMFSDGEVAALCSRFP-VF 156 Query: 158 TDFLELFKKRSSA-------------------------ARNLTERETSCLQLAGDGYTSE 192 + +LT RE + L G+ + Sbjct: 157 EALHATDTRTRDPNLRRTSTPEAMGEAPVSAVQASLILWPDLTVRERELVALILQGHPNA 216 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 IA +LG++ TV + KLD + Sbjct: 217 TIASRLGIAPGTVKNHRARIYEKLDITTEREL 248 >gi|119715190|ref|YP_922155.1| response regulator receiver [Nocardioides sp. JS614] gi|119535851|gb|ABL80468.1| response regulator receiver [Nocardioides sp. JS614] Length = 216 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + + LTE+E L +G T+ +I E++ L+ TV Y+ S KL Sbjct: 141 ERVRHPPTTAPELAELTEQELKLLGYIAEGLTNRQIGERMYLAEKTVKNYVSSILAKLGL 200 Query: 219 VNRIQAIAKAIRF 231 R QA A + Sbjct: 201 ERRTQAAVLASKL 213 >gi|302035963|ref|YP_003796285.1| LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604027|emb|CBK40359.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 218 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 G ++ + R+L + +E L L G T++EIA +LGLS TV YL Sbjct: 135 GVTRHTFAYLRKVADREPERGRHLLSPQERRLLPLIAQGKTNKEIAAELGLSDKTVKNYL 194 Query: 210 GSATVKLDAVNRIQAIAK 227 + KL R QA A Sbjct: 195 ANVYSKLHLSRRSQAAAF 212 >gi|298244596|ref|ZP_06968402.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552077|gb|EFH85942.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 732 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 155 QVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + L + + L+ E L L G +++EIA +L +SV+TV ++ Sbjct: 640 EAQRELDRLEGRVETNGLVEPLSAHEERVLHLLIAGLSNQEIASELIISVNTVKYHIKHL 699 Query: 213 TVKLDAVNRIQAIAKAIRFGY 233 KL NR+QA A + Sbjct: 700 YQKLGVSNRLQASEAARQLHL 720 >gi|291007045|ref|ZP_06565018.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 175 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%) Query: 155 QVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ +F + + + LT RE L DG + EEIA+KL S T+ L Sbjct: 92 ALVEEFERIREHVLAPRDLTMHGLTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILY 151 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +L NR A+A AIR G I Sbjct: 152 QFMKRLGLRNRAHAVAYAIRLGII 175 >gi|285016912|ref|YP_003374623.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283472130|emb|CBA14637.1| putative two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 221 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ R LT ++ LQ+ G G +++IA L +S T+ A++ + KL NR Sbjct: 138 RAEREVGQRLRELTPQQIRVLQMLGAGRLNKQIAYDLSVSEATIKAHVTAILRKLGVTNR 197 Query: 222 IQAIAKA 228 QA+ A Sbjct: 198 TQAVLLA 204 >gi|254491454|ref|ZP_05104633.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224462932|gb|EEF79202.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L+ + + LT RE +L +G ++IA +L + TV Y S K Sbjct: 133 AHKVALQSLAGDDNPTQRLTSREFEVFRLLAEGKLVDDIASRLNIGQKTVANYQTSLKQK 192 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L + + + A+++G I Sbjct: 193 LGIHSPVDLVRLAMKYGVI 211 >gi|311745162|ref|ZP_07718947.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] gi|126577683|gb|EAZ81903.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] Length = 220 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S LT RE L L G + EIA++L +S T + + KL+ N ++ Sbjct: 151 EPVSEELAALTNREKQILDLILKGKGNNEIADELKISKRTAEVHRFNLMKKLNVKNLVEL 210 Query: 225 IAKAIRFGYI 234 K+ I Sbjct: 211 TNKSKELHLI 220 >gi|120556773|ref|YP_961124.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120326622|gb|ABM20937.1| two component transcriptional regulator, LuxR family [Marinobacter aquaeolei VT8] Length = 301 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 31/57 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE+ L +G T+ EI + L +S TVN +L K++ NR A A AIR Sbjct: 240 LTLRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQVFRKMNVENRTAAAANAIR 296 >gi|310765952|gb|ADP10902.1| LuxR family regulatory protein [Erwinia sp. Ejp617] Length = 208 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E ++L GYT EIA + ++ TV+ +A +L + ++ I A G Sbjct: 147 GLTPKELEVIRLFSSGYTLSEIARRQNRTISTVSTQKYNAMRRLGVSSNVELIRYAYAQG 206 Query: 233 YI 234 I Sbjct: 207 LI 208 >gi|307826600|ref|ZP_07656720.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307732395|gb|EFO03310.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 171 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE L+L GY ++EIA+ L +S+ TV + + K +A N ++ A + G Sbjct: 26 NLTSREAQLLKLIAAGYKNKEIADSLCISLKTVETHRATLMRKFNAHNVATLLSVANQAG 85 >gi|302521038|ref|ZP_07273380.1| two component system response regulator [Streptomyces sp. SPB78] gi|302429933|gb|EFL01749.1| two component system response regulator [Streptomyces sp. SPB78] Length = 239 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ IAE+L LS TV AY+ +L NR++A A G Sbjct: 174 LTPREREVLVLLAGGLSNAGIAERLRLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 233 >gi|259906728|ref|YP_002647084.1| LuxR family regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224962350|emb|CAX53805.1| Bacterial regulatory protein, LuxR [Erwinia pyrifoliae Ep1/96] gi|283476513|emb|CAY72328.1| Fimbriae Z protein [Erwinia pyrifoliae DSM 12163] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E ++L GYT EIA + ++ TV+ +A +L + ++ I A G Sbjct: 153 GLTPKELEVIRLFSSGYTLSEIARRQNRTISTVSTQKYNAMRRLGVSSNVELIRYAYAQG 212 Query: 233 YI 234 I Sbjct: 213 LI 214 >gi|111027158|ref|YP_709136.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110825697|gb|ABH00978.1| probable transcriptional regulator, LuxR family [Rhodococcus jostii RHA1] Length = 427 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 163 LFKKRSSAARNL----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L + L RE L G ++ IA +LG+S T+ ++ S KLD Sbjct: 344 LDPPAARPGEQLLSTLNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDV 403 Query: 219 VNRIQAIAKAIRFGY 233 NR +A A I+ G Sbjct: 404 ANRGEAGAIGIQAGI 418 >gi|119715573|ref|YP_922538.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119536234|gb|ABL80851.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 188 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 38/75 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L A+ LT RE L L G ++ EIAE L LS+++V Y+ SA K+ Sbjct: 103 HALPGSGDPLGASVALTAREVEVLALITQGMSNPEIAEHLYLSINSVKTYIRSAYAKIGV 162 Query: 219 VNRIQAIAKAIRFGY 233 +R +A+A + G+ Sbjct: 163 TSRARAVAWCLLHGF 177 >gi|330810333|ref|YP_004354795.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378441|gb|AEA69791.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 115 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G ++++A L +S TV ++ S KL+ R A KA + G Sbjct: 54 LTGRECRILREISVGANNKQVARLLEISPSTVRTHVESIFRKLECSTRAAATFKAAKLGL 113 Query: 234 I 234 I Sbjct: 114 I 114 >gi|104782489|ref|YP_608987.1| response regulator [Pseudomonas entomophila L48] gi|95111476|emb|CAK16196.1| response regulator GacA (Global antibiotic and cyanide control protein, LuxR/UhpA family) [Pseudomonas entomophila L48] Length = 212 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 5/120 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGACYQVITDF-LELFKKRSSAARNL 174 FP RL + L + I A C Q+ L+ F+ + S L Sbjct: 89 FPTRLLQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYICPQIAQQLALKSFQPQGSPFDAL 148 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE + + I++KL LS TVN Y KL + ++ A+R G + Sbjct: 149 SEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 208 >gi|85712393|ref|ZP_01043443.1| Response regulator, LuxR family protein (CheY, HTH domains) [Idiomarina baltica OS145] gi|85693836|gb|EAQ31784.1| Response regulator, LuxR family protein (CheY, HTH domains) [Idiomarina baltica OS145] Length = 216 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KR + L++RE +Q+ G G EIAE L +S T+N + KL+ + +Q Sbjct: 139 DKRRNIVEQLSDRELQVMQMIGRGVRVSEIAEHLCISSKTINTFRYRIFAKLNINSDVQL 198 Query: 225 IAKAIRFGYI 234 A+R G + Sbjct: 199 SHLALRAGLV 208 >gi|300716380|ref|YP_003741183.1| two component transcriptional regulator, LuxR family [Erwinia billingiae Eb661] gi|299062216|emb|CAX59333.1| Two component transcriptional regulator, LuxR family [Erwinia billingiae Eb661] Length = 205 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETS 180 L + G F ++ L+ I+ + +S L++RE S Sbjct: 90 LRCQQTGADGFVTKTDDLSELVDAIKLVMRGISYFPQYNRFIAPTTQSEQLEQLSDRELS 149 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + G +++IA++L LS T++ Y +KL+A I+ I A I Sbjct: 150 VLMMLAKGMGNKQIADQLVLSEKTISTYKHRLKIKLNAATLIELIDFARNNNLI 203 >gi|323529867|ref|YP_004232019.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386869|gb|ADX58959.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 251 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + L + NL+ R+ ++L G+T++ IA +LG++ TV +L Sbjct: 167 AEPVAQLQALQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARELGVAEGTVKVHLSVIF 226 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 L NR AI A+ G++ Sbjct: 227 RALGVHNRSTAI--AVVNGWL 245 >gi|290963094|ref|YP_003494276.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260652620|emb|CBG75753.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L +G ++ EI + LS TV ++ + KL R++A A R G Sbjct: 150 LTERERQVLVLVAEGLSNAEIGTVVHLSEGTVKDHVSAILGKLGVAGRVRAALLAQRAGL 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|269928442|ref|YP_003320763.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269787799|gb|ACZ39941.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 799 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 35/106 (33%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VR + ++ L +E L ++ + LT RE Sbjct: 678 VRGMLDDAAFEPAWTQGRALTLAEAVERAQRLLATPPGPSRLHRRPRTQLGGLTRREYEV 737 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G T+ EIA L + TV ++ + KL +R Q A Sbjct: 738 ALHVALGKTNREIAADLSIGEKTVEMHVSNCLTKLGLRSRAQLAAW 783 >gi|229491400|ref|ZP_04385224.1| response regulator receiver protein [Rhodococcus erythropolis SK121] gi|229321685|gb|EEN87482.1| response regulator receiver protein [Rhodococcus erythropolis SK121] Length = 367 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + + ++ + G ++ S LT RE L Sbjct: 261 RGVHAELRSVAQTVTDTDLQTKLRGLSQRLANLLRPTADAESDVT--LTPREVDVLSQVA 318 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E ++L L TV +YL SA KLDA +R +A+ A R G + Sbjct: 319 LGCTNIEAGQRLSLRPETVKSYLRSAMGKLDASSRHEAVVTARRLGLL 366 >gi|254392355|ref|ZP_05007538.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442209|ref|ZP_08216943.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197706025|gb|EDY51837.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 222 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H ++ L+ RE L L G+G ++ + +L +S TV Y+ Sbjct: 136 HVVDQLATGHAASRNERARERVAQLSARERDVLSLLGEGLSNADAGRRLHMSEATVKTYV 195 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL+ NR+QA A G Sbjct: 196 SRILAKLECENRVQAALLARDAGL 219 >gi|127511543|ref|YP_001092740.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126636838|gb|ABO22481.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 199 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 14/151 (9%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 +P I ++ ++ L + G P+ + + G F Sbjct: 57 ILDSRMPAISGQALQQELLTKQSPLGIIFLTGHGD-----LPMAVNAFRQGACDFF--QK 109 Query: 140 MLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 ++ + + A Q + L+L + L++RE L+L G T+++++E Sbjct: 110 PVSGQALAAAIDKSMLHSQKAFEALQLSHNLA----TLSDREHQVLELLIQGKTNKQLSE 165 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L LS+ T+ + + KL N + Sbjct: 166 ALFLSLRTIEVHRSNVMKKLKVHNLAELAKY 196 >gi|117922129|ref|YP_871321.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117614461|gb|ABK49915.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 201 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L G T+++I+E + LS+ T+ + KL+ N + + Sbjct: 138 QLTEREQQVLAHVVQGMTNKQISEAMYLSLRTIEVHRAKIMKKLEVSNMAELV 190 >gi|331087369|gb|AEC53455.1| two-component system response regulator [Actinosynnema pretiosum subsp. auranticum] Length = 205 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 V L + + S++A LT RE ++ G + EI + L LS+ TV + Sbjct: 118 LISPDVTLRVLRSWTRPSASADVGLLTPRERDVVREVARGLGNREIGDALHLSLSTVKTH 177 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L +A K A NR++ A A R + Sbjct: 178 LAAAQGKTGARNRVELAAWAFRARLV 203 >gi|295098454|emb|CBK87544.1| Response regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 205 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 5/96 (5%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S L+ + E + + + L ++ +LT RE L+LA G +++IA Sbjct: 107 SSALIGSIESALRLAQHNAARVKEHYALKQRHL----SLTPREHEVLELAVSGKLNKQIA 162 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LG+S TV + K+ + + + +A+ Sbjct: 163 AELGVSEITVKVHRRRVMEKMQVRSVAELV-RAVER 197 >gi|167563375|ref|ZP_02356291.1| response regulator receiver protein [Burkholderia oklahomensis EO147] gi|167570543|ref|ZP_02363417.1| response regulator receiver protein [Burkholderia oklahomensis C6786] Length = 212 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 P+ + K G + F E E+ + ++ + ++R++ LT R Sbjct: 97 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207 >gi|163745597|ref|ZP_02152957.1| DNA-binding response regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] gi|161382415|gb|EDQ06824.1| DNA-binding response regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] Length = 206 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ERE L+ +++EIA L L T+ ++ + KLDA NR A A Sbjct: 144 KALSERERQVLRGLMIAQSNKEIARDLDLQEVTIKLHVKTLCRKLDAKNRTDAAIIARDA 203 Query: 232 GYI 234 G++ Sbjct: 204 GFV 206 >gi|29570535|gb|AAO85385.1| response regulator [Pseudomonas fluorescens] gi|29825730|gb|AAO92275.1| response regulator GacA [Pseudomonas fluorescens] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172 FP RL GY+ + E ++ A + I L L ++ S Sbjct: 89 FPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFD 148 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + + + I++KL LS TVN Y KL + ++ A+R G Sbjct: 149 SLSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHG 208 Query: 233 YI 234 + Sbjct: 209 MV 210 >gi|87121275|ref|ZP_01077165.1| regulatory protein, LuxR [Marinomonas sp. MED121] gi|86163432|gb|EAQ64707.1| regulatory protein, LuxR [Marinomonas sp. MED121] Length = 332 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 10/129 (7%) Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQV 156 L + P+ + + T + +++++++ E + Sbjct: 199 PSFMTLLYEHFSRRNIYSLPIDIPDALAHAALSTEVDPDRLYTVISHDLVFELT-----L 253 Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + +++ + L+ RE +QL G T +E+A+KL L+ T++ +L KL Sbjct: 254 MGSLVKVGLRPLGPLDKLSAREKEIVQLVCKGLTFKEVAKKLQLAPSTISNHLYRVYDKL 313 Query: 217 DAVNRIQAI 225 +R + Sbjct: 314 AISSRSELA 322 >gi|300691337|ref|YP_003752332.1| two component transcriptional regulatory protein [Ralstonia solanacearum PSI07] gi|299078397|emb|CBJ51047.1| two component transcriptional regulatory protein [Ralstonia solanacearum PSI07] Length = 210 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176 P+ + K G V F + E +++ +A LT Sbjct: 97 VPMAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARTEDSAAREQKAAKDLLSRLTT 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209 >gi|256394916|ref|YP_003116480.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361142|gb|ACU74639.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 895 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 50/174 (28%), Gaps = 6/174 (3%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 + T L + ES + + R E + + Sbjct: 708 AAVAERAPQQPSTLRPFALRAGMWAHAALGEHEAALTRAQESVREFTARGERIEVCRTLL 767 Query: 119 A---FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA---AR 172 A F +R G L+ + + L + + Sbjct: 768 AASEFALRAGRADLVAGWLDRVALLAEQCGAGRLATEAVRHRSRLAALADAQPDPQSTSA 827 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L G T+ IAEKL LSV TV ++L KLD NR Sbjct: 828 PLTAREREIANLVSTGMTNTAIAEKLFLSVRTVESHLRQIYRKLDVPNRAALTR 881 >gi|182624556|ref|ZP_02952339.1| salavaricin two-component response regulator [Clostridium perfringens D str. JGS1721] gi|177910364|gb|EDT72745.1| salavaricin two-component response regulator [Clostridium perfringens D str. JGS1721] Length = 201 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L L G G + IA+ + +S T+ ++ + KL+ + I+AI KA + Sbjct: 137 ADLLTEREKEILSLLGKGERRKNIAKTIYISERTLTNHIQNILEKLEVDSTIKAIIKAQK 196 Query: 231 FGYI 234 GYI Sbjct: 197 LGYI 200 >gi|126652652|ref|ZP_01724813.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus sp. B14905] gi|169829490|ref|YP_001699648.1| germination protein [Lysinibacillus sphaericus C3-41] gi|299535535|ref|ZP_07048856.1| germination protein [Lysinibacillus fusiformis ZC1] gi|126590501|gb|EAZ84619.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus sp. B14905] gi|168993978|gb|ACA41518.1| Germination protein [Lysinibacillus sphaericus C3-41] gi|298728735|gb|EFI69289.1| germination protein [Lysinibacillus fusiformis ZC1] Length = 73 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L T+ +IAE+LG+S TV ++ + KL NR QA+ + +R Sbjct: 10 LTNREREIFALLLAEKTTRDIAEQLGISEKTVRNHISNTIQKLGVTNRSQALIELLRL 67 >gi|331696106|ref|YP_004332345.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950795|gb|AEA24492.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 446 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 17/222 (7%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + ++ R ++ AL + P L + + + Sbjct: 210 VDDVRTRFDGWATGVRLAGVALRGVGGCGPLPAS--LTEVEEYFSAELLERVTS----AQ 263 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 L H + + T +G+ L +R Sbjct: 264 RRLLLHCGVLDE-VTPDGAEALTGSPGAGEELRALAAS-------TLFLRRTPRGFRIHP 315 Query: 134 FTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190 +L E + + A L+ RE + L+ T Sbjct: 316 ALRPVLHDVLVREEPGMLPVLAERAHRAAVRDDAGPVLVAGEPLSPRELAVLRALAGPLT 375 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 EIA ++ LS +TV ++ S KL R A+ G Sbjct: 376 LREIAAEMHLSHNTVKTHVRSVFRKLRVHERRAAVVAGRERG 417 >gi|300870842|ref|YP_003785713.1| two-component system regulator [Brachyspira pilosicoli 95/1000] gi|300688541|gb|ADK31212.1| two-component system regulator [Brachyspira pilosicoli 95/1000] Length = 320 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +K NLT+RE L G T++EI+ +S++TVN ++ + K NR+ Sbjct: 252 LEEKIEVNDFNLTKREKQILSYLLSGKTNKEISLIFDISLNTVNNHVANIYYKSGVKNRV 311 Query: 223 QAIAK 227 + + K Sbjct: 312 ELVNK 316 >gi|224538294|ref|ZP_03678833.1| hypothetical protein BACCELL_03185 [Bacteroides cellulosilyticus DSM 14838] gi|224520079|gb|EEF89184.1| hypothetical protein BACCELL_03185 [Bacteroides cellulosilyticus DSM 14838] Length = 204 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + G T++ IA++L LS+HTV + + KL + AI Sbjct: 135 LSQREKEIITCVVKGMTNKAIADQLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|197337614|ref|YP_002157683.1| transcriptional regulatory protein FixJ [Vibrio fischeri MJ11] gi|197314866|gb|ACH64315.1| transcriptional regulatory protein FixJ [Vibrio fischeri MJ11] Length = 205 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 8/143 (5%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 +I + + E GQ L + ++ G + + Sbjct: 58 AILDSRMPELRGQDVHELLKQ--QNSPLSVIFLTGHGDIPMAVDALKAGAADFFQKPVDG 115 Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + I + L +KR + LT RE L+L G ++++A+ + +S+ T Sbjct: 116 EVLFTAIQNGLTASEKRYKSQDVHRAYFTLTAREQEVLKLIVQGMKNQQMADSMCVSLRT 175 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 + + + KL + + I + Sbjct: 176 IEVHRSNLMKKLGVNSVVDLIMR 198 >gi|189468008|ref|ZP_03016793.1| hypothetical protein BACINT_04402 [Bacteroides intestinalis DSM 17393] gi|189436272|gb|EDV05257.1| hypothetical protein BACINT_04402 [Bacteroides intestinalis DSM 17393] Length = 204 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + G T++ IA++L LS+HTV + + KL + AI Sbjct: 135 LSQREKEIITCVVKGMTNKAIADQLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|167751935|ref|ZP_02424062.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216] gi|167660176|gb|EDS04306.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216] Length = 203 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ + L+ERE L G T+ EIA++ +S+HTV ++ Sbjct: 113 RVHHKLRQALEQTRTTAQPEGYELSEREREILVAVARGLTNREIADQYFISIHTVISHRK 172 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + T K A+ I Sbjct: 173 NITRKTGIKTIAGLTVYALLNNMI 196 >gi|241518604|ref|YP_002979232.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863017|gb|ACS60681.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 864 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +A V G +V K + A LT RE L+ G ++ EIA L Sbjct: 770 SAVAQHVRAIIRGRLGRVAARGPRASTKANPA--GLTTREMDVLRWVDLGKSNGEIAALL 827 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV+ ++ S KL+A R A + A G + Sbjct: 828 FVSAKTVDHHVSSILAKLNAKTRTAAASHARSRGLL 863 >gi|124265956|ref|YP_001019960.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124258731|gb|ABM93725.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 919 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 36/101 (35%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + A + + L+ RE + L +G + Sbjct: 819 WQALAPRLRCPAAAQARLRGRLAAWLAEGPRAAVADAAPPDDPLSAREREVMALLAEGQS 878 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++ IA LGLS+HTV ++ + KL +R QA A R Sbjct: 879 NKLIARALGLSLHTVKRHVANILTKLALDSRTQAAAYWHRR 919 >gi|124003451|ref|ZP_01688300.1| transcriptional regulator, LuxR family protein [Microscilla marina ATCC 23134] gi|123991020|gb|EAY30472.1| transcriptional regulator, LuxR family protein [Microscilla marina ATCC 23134] Length = 235 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 28/62 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L GY + EI E+L +S TV Y + KL+ + I A F Sbjct: 174 ALTPREKEIITLLALGYQNNEIGEQLFISKATVEQYRKNLKRKLEVRRFVDLIRFAQAFD 233 Query: 233 YI 234 I Sbjct: 234 LI 235 >gi|91784262|ref|YP_559468.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91688216|gb|ABE31416.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] gi|99652808|dbj|BAE94657.1| response regulator [Burkholderia xenovorans LB400] Length = 214 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177 P+ + K G + F E E+ + ++ + ++R++A R LT R Sbjct: 96 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESTSVQQQRAAAERLGKLTAR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206 >gi|325527607|gb|EGD04913.1| Two component LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 263 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS--AARNL 174 L +GYV+ F L + + G C ++ F+ + + A L Sbjct: 101 LRAGVDGYVLKDVSFDELLLAMRMVMQGKRHLSAEVCGYMVDSFVTGREAPAPRKAWDVL 160 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE S L+L +G T+ ++ + L LS T+ Y S KL N + + A+ G + Sbjct: 161 TARERSVLKLIAEGRTNRQVGQYLNLSPKTIEKYRASMMHKLHLANLTELVLVAMNMGLL 220 >gi|293607167|ref|ZP_06689509.1| LuxR family sensory box transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814501|gb|EFF73640.1| LuxR family sensory box transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 508 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 5/103 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYT 190 +E L V+ + +I +L + ++ LT RE L L G+ Sbjct: 391 TELLAAIEAVMQDTSWFSRGIIEKLAQLRQPAPASRDVAELAQLTTREREVLGLLCQGHD 450 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + IA+ L LS +TV ++ + K+ R AI A G Sbjct: 451 DDGIAKALKLSRNTVRNHVATIYSKIGVHRRSAAIVWARDRGI 493 >gi|289751092|ref|ZP_06510470.1| predicted protein [Mycobacterium tuberculosis T92] gi|289691679|gb|EFD59108.1| predicted protein [Mycobacterium tuberculosis T92] Length = 219 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 131 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 190 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A G Sbjct: 191 YTKLGLSSRLQLAQQAAHRG 210 >gi|254285405|ref|ZP_04960370.1| response regulator VieA [Vibrio cholerae AM-19226] gi|150424677|gb|EDN16613.1| response regulator VieA [Vibrio cholerae AM-19226] Length = 584 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 15/120 (12%) Query: 115 FAGIAFPVRLG-------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + G + G V+ + + ++ ++ +A + EL + Sbjct: 469 YRGALLVLHDGLTAEIQQDDSKAIVVKANTLMETSSRILQQAQQSNVHPQAQQEELAQ-- 526 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + ++ +G T++EIA +L ++ TV+ Y KL + ++ + Sbjct: 527 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSVMELVRF 580 >gi|120437806|ref|YP_863492.1| LuxR family transcriptional regulator protein [Gramella forsetii KT0803] gi|117579956|emb|CAL68425.1| LuxR family transcriptional regulator protein [Gramella forsetii KT0803] Length = 267 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +++RE + G +E+IA L LS HTV + + K N + +AK + Sbjct: 202 EIISDREKEIVIRFSRGLNAEQIATDLNLSPHTVKTHRRNVLQKSGCTNTTELVAKCLTS 261 Query: 232 GYI 234 G I Sbjct: 262 GII 264 >gi|90415637|ref|ZP_01223571.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium HTCC2207] gi|90332960|gb|EAS48130.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium HTCC2207] Length = 302 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 8/117 (6%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G P+RL ++ E E ++ A + L Sbjct: 188 LAEGAKQPLRLEDLAQPLLVTAQESEDAD-ERLLVLELANKPNDEELLREKFG------- 239 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G T+ EIA L S T N +L KL+ NR A A ++R Sbjct: 240 LTAREAEVLTWISKGKTNHEIAIILDFSPRTANKHLEQIFRKLNVENRTTAAAVSLR 296 >gi|53719913|ref|YP_108899.1| response regulator protein [Burkholderia pseudomallei K96243] gi|53724159|ref|YP_103343.1| LuxR family DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76811469|ref|YP_334134.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121601447|ref|YP_993544.1| LuxR family DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124386548|ref|YP_001029028.1| LuxR family DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126438707|ref|YP_001059640.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126448807|ref|YP_001081052.1| LuxR family DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126452394|ref|YP_001066923.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134277393|ref|ZP_01764108.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 305] gi|167000626|ref|ZP_02266437.1| DNA-binding response regulator, LuxR family [Burkholderia mallei PRL-20] gi|167720369|ref|ZP_02403605.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167739362|ref|ZP_02412136.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167816577|ref|ZP_02448257.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167824972|ref|ZP_02456443.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167846490|ref|ZP_02471998.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167895067|ref|ZP_02482469.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167903453|ref|ZP_02490658.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167911704|ref|ZP_02498795.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167919702|ref|ZP_02506793.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217420684|ref|ZP_03452189.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|226195476|ref|ZP_03791064.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237813035|ref|YP_002897486.1| transcriptional regulatory protein FixJ [Burkholderia pseudomallei MSHR346] gi|238561635|ref|ZP_04609684.1| transcriptional regulatory protein FixJ [Burkholderia mallei GB8 horse 4] gi|242316741|ref|ZP_04815757.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254178707|ref|ZP_04885362.1| DNA-binding response regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254184353|ref|ZP_04890943.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254191386|ref|ZP_04897890.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254195951|ref|ZP_04902377.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200301|ref|ZP_04906667.1| DNA-binding response regulator, LuxR family [Burkholderia mallei FMH] gi|254209377|ref|ZP_04915723.1| DNA-binding response regulator, LuxR family [Burkholderia mallei JHU] gi|254260594|ref|ZP_04951648.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254297016|ref|ZP_04964469.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254357951|ref|ZP_04974224.1| DNA-binding response regulator, LuxR family [Burkholderia mallei 2002721280] gi|52210327|emb|CAH36306.1| response regulator protein [Burkholderia pseudomallei K96243] gi|52427582|gb|AAU48175.1| DNA-binding response regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|76580922|gb|ABA50397.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|121230257|gb|ABM52775.1| DNA-binding response regulator, LuxR family [Burkholderia mallei SAVP1] gi|124294568|gb|ABN03837.1| DNA-binding response regulator, LuxR family [Burkholderia mallei NCTC 10229] gi|126218200|gb|ABN81706.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 668] gi|126226036|gb|ABN89576.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126241677|gb|ABO04770.1| DNA-binding response regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|134251043|gb|EBA51122.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 305] gi|147749897|gb|EDK56971.1| DNA-binding response regulator, LuxR family [Burkholderia mallei FMH] gi|147750150|gb|EDK57221.1| DNA-binding response regulator, LuxR family [Burkholderia mallei JHU] gi|148027078|gb|EDK85099.1| DNA-binding response regulator, LuxR family [Burkholderia mallei 2002721280] gi|157807044|gb|EDO84214.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157939058|gb|EDO94728.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160699746|gb|EDP89716.1| DNA-binding response regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|169652696|gb|EDS85389.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|184214884|gb|EDU11927.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217396096|gb|EEC36113.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|225932436|gb|EEH28435.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237502844|gb|ACQ95162.1| transcriptional regulatory protein FixJ [Burkholderia pseudomallei MSHR346] gi|238524253|gb|EEP87687.1| transcriptional regulatory protein FixJ [Burkholderia mallei GB8 horse 4] gi|242139980|gb|EES26382.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243063436|gb|EES45622.1| DNA-binding response regulator, LuxR family [Burkholderia mallei PRL-20] gi|254219283|gb|EET08667.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 212 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 P+ + K G + F E E+ + + + ++R++ LT R Sbjct: 97 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLEKARNESKSVQEQRAASERLSKLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207 >gi|320537182|ref|ZP_08037151.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320145970|gb|EFW37617.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 217 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT++E ++L +G++++EIA K LS T+ + K +R Q A + G Sbjct: 156 ELTQKEIEIIKLVAEGFSNKEIAHKQQLSEGTIKNNISVIFSKTFVADRTQLALFAFKNG 215 Query: 233 YI 234 + Sbjct: 216 IV 217 >gi|301301409|ref|ZP_07207547.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300850961|gb|EFK78707.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 201 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L +++E+A+K LS T+ Y+ S K +R++A+ A + Sbjct: 140 PLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRN 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|262384081|ref|ZP_06077217.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|262294979|gb|EEY82911.1| transcriptional regulator [Bacteroides sp. 2_1_33B] Length = 203 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE + G T+ EIA++L LS HTV + + KL + AI Sbjct: 134 QSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVN 193 Query: 232 GYI 234 + Sbjct: 194 KLV 196 >gi|257142870|ref|ZP_05591132.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] Length = 307 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 59/233 (25%), Gaps = 13/233 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 M+ + +SS + ++ A P +L Sbjct: 75 MTHDPARSDSASSYAHALRACVGSLQALARPTATVFYRIDASGEPVDFELFGMTAAMHRA 134 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 L D S ++ + Q + + Sbjct: 135 YVSRYRPL-----DPLHPARCASQPGAVVTLASQLPDERRDASSYWTGFLRRHGVADVVE 189 Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAAR 172 +R G + I H V L + +R + Sbjct: 190 VLLRDGGAPVAAFSLLRLAGGGRYSAAEIAALHAVQPVVEVALLPPLRAVRGIRRIACDV 249 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 250 RLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 302 >gi|197116849|ref|YP_002137276.1| LuxR family helix-turn-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086209|gb|ACH37480.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter bemidjiensis Bem] Length = 216 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 35/74 (47%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + + NL++RE LQL DG ++EIA G+SV TV S KLD Sbjct: 139 LQRIPDEVPATYENLSQREREILQLIADGRNAKEIAFSFGVSVKTVENQRHSIMKKLDLF 198 Query: 220 NRIQAIAKAIRFGY 233 + + A+R G Sbjct: 199 SIAELTKYAVRQGL 212 >gi|170694723|ref|ZP_02885874.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|187924570|ref|YP_001896212.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|307729196|ref|YP_003906420.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|323526630|ref|YP_004228783.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|170140354|gb|EDT08531.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|187715764|gb|ACD16988.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] gi|307583731|gb|ADN57129.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] gi|323383632|gb|ADX55723.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177 P+ + K G + F E E+ + ++ + ++R++A R LT R Sbjct: 96 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESTSVQQQRAAAERLGKLTAR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206 >gi|291449531|ref|ZP_06588921.1| large transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291352478|gb|EFE79382.1| large transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 932 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 6/137 (4%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 + G L +G+ + + + + Sbjct: 795 VSAADAWTRLERPYEAAYVKEARGLHLLTSGV------PGGRTVLHQAIAAYEDIDAVWD 848 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + +L+ RE + +LA G ++ EIA +L LS TV Sbjct: 849 VLRCQRELREHGQTTVRRPGALGYGDHLSPRERAVARLASLGLSNREIARELVLSHRTVE 908 Query: 207 AYLGSATVKLDAVNRIQ 223 ++ A KL +R + Sbjct: 909 HHVARALRKLGVSSRTE 925 >gi|284045809|ref|YP_003396149.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950030|gb|ADB52774.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 381 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LT 175 ++ + ++ IE L + + LT Sbjct: 257 HEREQMRRFLAWVDARSGALSDAAIEFVPRALGEQGSSLRQPRLPPMPSAAEDPFGGLLT 316 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE L+L +G T++EIA L +SV TV ++ S KL NR QA+A+ Sbjct: 317 RRELEVLRLVAEGRTNDEIATALVISVGTVKFHVSSILRKLRVGNRAQAVAR 368 >gi|237801455|ref|ZP_04589916.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024314|gb|EGI04371.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 77 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 40/76 (52%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +E+ + S A+NLT+RE L+ + +G T+ IA L L T++ ++ SA K+ Sbjct: 1 MNTMEINFLQPSPAKNLTQREIEVLKWSAEGKTAGAIAIILCLKERTIHFHIASAIQKMG 60 Query: 218 AVNRIQAIAKAIRFGY 233 N+ A +A G Sbjct: 61 VCNKTAAAVRAAMSGM 76 >gi|299821741|ref|ZP_07053629.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817406|gb|EFI84642.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 213 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 27/55 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE +Q G +++EIA+KL +S TV + + KL +R Q Sbjct: 149 PLTSREQDVIQAVASGLSNKEIAKKLFISEGTVANNISALLNKLGLEHRTQLAIF 203 >gi|215427869|ref|ZP_03425788.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T92] Length = 249 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 K+ +S LT E L G+G +++EI +L +S TV+++L Sbjct: 161 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 220 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL +R+Q +A G Sbjct: 221 YTKLGLSSRLQLAQQAAHRG 240 >gi|254387494|ref|ZP_05002733.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064] gi|294815121|ref|ZP_06773764.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443484|ref|ZP_08218218.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701220|gb|EDY47032.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064] gi|294327720|gb|EFG09363.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 230 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE L G+G ++ EIA +L ++ TV ++ KL+ +R+QA Sbjct: 165 PSVLDVLTRREREVLSAVGEGLSNAEIAVRLSMAEATVKTHVSRLLNKLELRSRVQAAVL 224 Query: 228 AIRFGY 233 A G Sbjct: 225 AQELGI 230 >gi|160899416|ref|YP_001564998.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160365000|gb|ABX36613.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 216 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + + + A LT RE L+ G +++IA+ LG+S+ TV A+ + Sbjct: 126 AREAFAGHQQAASRDALLA-KLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANI 184 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KL+A + A+ G Sbjct: 185 MEKLNANTVADLLKIALGQG 204 >gi|70728620|ref|YP_258369.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68342919|gb|AAY90525.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 216 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT ++ L + +G +++IA +L +S T+ A++ + KL R QA + Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210 >gi|289705063|ref|ZP_06501474.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58] gi|289558226|gb|EFD51506.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58] Length = 232 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT E +L +S TV ++ S KL NR + A R Sbjct: 170 DRLSAREREVMRLIARGYTYREAGAELFISDRTVETHVSSVLRKLQLSNRHELTRWAARR 229 Query: 232 GY 233 GY Sbjct: 230 GY 231 >gi|290962624|ref|YP_003493806.1| regulator [Streptomyces scabiei 87.22] gi|260652150|emb|CBG75282.1| putative regulator [Streptomyces scabiei 87.22] Length = 1002 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 25/64 (39%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S L+ RE L G TS IAE+L LS TV +L K +R Sbjct: 928 REAASEELAVLSPREREIAALVAKGLTSPAIAERLFLSPRTVETHLSRIYRKTGVTSRAA 987 Query: 224 AIAK 227 A Sbjct: 988 LAAL 991 >gi|290960685|ref|YP_003491867.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260650211|emb|CBG73327.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 201 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L++A DG + +IA +L LSV TV YL + KL+A NR+ AI A G Sbjct: 140 PLTPRETEVLRMAADGAEAADIASRLFLSVGTVRNYLTTVVTKLNARNRVDAIRVARESG 199 Query: 233 YI 234 ++ Sbjct: 200 WL 201 >gi|187924633|ref|YP_001896275.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715827|gb|ACD17051.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEE 193 E ++ A + H + + D L + + L+ERE G + Sbjct: 109 EEIVRAIRAVARGHRYLSEAVADTLADNLDKPAAGRPHEALSEREFQIFCKLAAGQIPTD 168 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE+L LSV TV+ Y K+ N AI+ G I Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209 >gi|116696235|ref|YP_841811.1| response regulator [Ralstonia eutropha H16] gi|113530734|emb|CAJ97081.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 224 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GYT E A LGLSVHTV +++ + KL +R +A+ +A + G Sbjct: 161 LSVRENEILDLISRGYTYAETARYLGLSVHTVQSHIKNIYGKLAVRSRGEAVFEAAKLGL 220 Query: 234 I 234 + Sbjct: 221 L 221 >gi|86739636|ref|YP_480036.1| ATP-dependent transcription regulator LuxR [Frankia sp. CcI3] gi|86566498|gb|ABD10307.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. CcI3] Length = 1235 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A L++RE + L T+ EIA +L +SV+TV +L S KLD R Sbjct: 1165 DGRGPGAGGRLSDRELAVLSYLPTMLTTTEIAAELFVSVNTVKTHLKSIYRKLDVPRRRD 1224 Query: 224 AIAKAIRFGYI 234 A+ +A + Sbjct: 1225 AVHRARELRLL 1235 >gi|83719547|ref|YP_442392.1| LuxR family DNA-binding response regulator [Burkholderia thailandensis E264] gi|167581308|ref|ZP_02374182.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167619391|ref|ZP_02388022.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257138594|ref|ZP_05586856.1| LuxR family DNA-binding response regulator [Burkholderia thailandensis E264] gi|83653372|gb|ABC37435.1| DNA-binding response regulator, LuxR family [Burkholderia thailandensis E264] Length = 212 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 P+ + K G + F E E+ + ++ + ++R++ LT R Sbjct: 97 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207 >gi|39934390|ref|NP_946666.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39648239|emb|CAE26758.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 228 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 3/115 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177 P+ + K G V F ++ A + E + S +LT R Sbjct: 94 IPMTVRAMKAGAVNFL-PKPFDEATLLAGVREAVSRARQKRSEADRDHSLRMHYASLTSR 152 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E + L G +++IA +L LS TV + G+ K+ A + + + A G Sbjct: 153 EREVMGLVTAGLMNKQIAWQLSLSEITVKIHRGNMMRKMQAKSLAELVRMADALG 207 >gi|330952743|gb|EGH53003.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 238 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 19/235 (8%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +KS+ Q+L + ++A + P QQ L + + Sbjct: 14 EKSTGRQKLEWEFEQSASERGVHHYAYFFY---HHTPALQQHGFVLVSGPEAGEKNSHCA 70 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL-EGGLLPFAGIA-----FPV 122 D + P+ + V + + A F + Sbjct: 71 ERQDVADTVRGVACS-QPLF-TGLLNRPVSSNDRGEMIDAGTTSDGMTAFYLGEEKAFSL 128 Query: 123 -RLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 R + G E+ + ++ E H ++ E + + +T+RE Sbjct: 129 LRFANKEAGTGNAQGEYSLATEVKSLVREFHHKLTGLVMGLNESDENFT-----ITDREK 183 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA L +S TV+ ++ + KL ++QA + + G + Sbjct: 184 EVYIWTAIGKTCNEIAVNLNISKRTVDFHISNVISKLGVRTKLQACIQLTKMGIL 238 >gi|315649523|ref|ZP_07902608.1| two-component response regulator [Paenibacillus vortex V453] gi|315274996|gb|EFU38371.1| two-component response regulator [Paenibacillus vortex V453] Length = 236 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H Q I + +++ ++ LT +E L G T+ EI L + T++ ++ Sbjct: 129 HHTSAQAIRREFQ-RQRKELWSKLLTPQERKILCYVYQGKTTSEIHRILNIEEKTIDNHV 187 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL NR +A A + G + Sbjct: 188 TSINRKLQVKNRREAAQVANKKGLL 212 >gi|311739592|ref|ZP_07713427.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311305408|gb|EFQ81476.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 225 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D L + +LT RE L+ G G+++ EI E++ +S+ TV ++G K + Sbjct: 142 DTLSISGADRRVLESLTAREQEILEAIGMGWSNTEICERMFISMPTVKTHVGRVLAKTSS 201 Query: 219 VNRIQAIAKAIRFGYI 234 +R+ A A R G + Sbjct: 202 RDRVHAALFAYRTGVV 217 >gi|212635220|ref|YP_002311745.1| response regulator [Shewanella piezotolerans WP3] gi|212556704|gb|ACJ29158.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Shewanella piezotolerans WP3] Length = 196 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 38/76 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +L + +A L+ R+ S L+L G +++++A+ L +S TV + S ++A Sbjct: 121 QYLSKSVQVEDSAPTLSARQLSVLRLLAQGKSAKQVADALFISPRTVEFHKYSIMKLIEA 180 Query: 219 VNRIQAIAKAIRFGYI 234 + + I A+ G + Sbjct: 181 KSSAELIQYALSRGLV 196 >gi|78223365|ref|YP_385112.1| two component LuxR family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194620|gb|ABB32387.1| two component transcriptional regulator, LuxR family [Geobacter metallireducens GS-15] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE + + G T +IA +L LSV TV+ Y KL+ N + I Sbjct: 148 QSLSNREYQVMSMIASGKTVGKIATELSLSVKTVSTYRAHILRKLNMKNNAELTRFVIEN 207 Query: 232 GYI 234 I Sbjct: 208 KLI 210 >gi|88704024|ref|ZP_01101739.1| two-component system response regulator [Congregibacter litoralis KT71] gi|88701851|gb|EAQ98955.1| two-component system response regulator [Congregibacter litoralis KT71] Length = 206 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%) Query: 151 GACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 ++IT + ++ A+ + LT RE + G G+ + EIAE L +S TV Sbjct: 119 ALVQRLITVGQRVDTGKAPASPDYFADLTPREEEVALMVGRGFNNREIAEALSVSERTVK 178 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231 A L + KL +R+Q R Sbjct: 179 ANLTAIFEKLGLRDRVQLALYVNRL 203 >gi|121606401|ref|YP_983730.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2] gi|120595370|gb|ABM38809.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2] Length = 222 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 73/213 (34%), Gaps = 8/213 (3%) Query: 24 IQNRIKARN-FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 + + + A F++ + P Q + + D Sbjct: 16 MSDWLSALGEFSVEALVVLGPDPFAGQESRLVLALHPPRLLEAAQALAASQDFGAPW-RD 74 Query: 83 GLLP-IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 P + WQ I + + L G IAFP+ +G Y+ ++ Sbjct: 75 SDAPLVAWQDISRAAFGDLGRWRRLWLAHGFQSVVRIAFPLTVGRAFECYLFSARQWPDR 134 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + L + R+ L+ RE CL LA G T+ + + L S Sbjct: 135 TEPSQLAWSALNIWPLVK-RALAQARNP----LSPRELECLDLAFQGMTARKTGDMLACS 189 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN +L +A KL N++ A+ +A FG I Sbjct: 190 ERTVNFHLANAMNKLKVDNKMAAVQRACWFGLI 222 >gi|296140293|ref|YP_003647536.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028427|gb|ADG79197.1| transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 920 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 7/174 (4%) Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRL 124 E G ++ + E + + +L GG + L Sbjct: 735 AEWAEVVGRPVTSGLAQRCRALLADDDEAEELYLGALRLHEEAAGGYDLARTRLVHGEWL 794 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTERET 179 + LA + A + + L K+ + LT +E Sbjct: 795 RRRRRRTEARAQLDAALAGFEDVGAAAWAQRARNELAALGAPGKGKRSAGPLNLLTPQEL 854 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI-AKAIRFG 232 ++LA G T++EIA L LS TV +L +A KL R A G Sbjct: 855 QVVRLAAAGNTNKEIAAHLFLSPRTVGYHLYNAYPKLGVAGRGDLAGIVAQERG 908 >gi|291616972|ref|YP_003519714.1| UvrY [Pantoea ananatis LMG 20103] gi|291152002|gb|ADD76586.1| UvrY [Pantoea ananatis LMG 20103] Length = 219 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 QKAESPFSCLSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|312195247|ref|YP_004015308.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226583|gb|ADP79438.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 220 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 L GY++ + + +A R + LT+R Sbjct: 101 LRAGARGYLLKGARQDDVIRTINAVARGDAVFGADIAGRVLTAFTDPRPAGVTFPQLTDR 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L DG+ + IA +LGLS TV ++ S KL A +R AI +A R G Sbjct: 161 EREVLVLVADGWPNHRIAHRLGLSAKTVANHVSSILAKLHAPDRAAAILQARRAGL 216 >gi|290957348|ref|YP_003488530.1| two-component chitin response regulator [Streptomyces scabiei 87.22] gi|260646874|emb|CBG69971.1| two-component chitin response regulator [Streptomyces scabiei 87.22] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT RE L G G ++ EIA +L ++ TV ++ KLD +R+QA Sbjct: 145 PAVLDSLTRREREVLGALGAGLSNAEIAGRLDMAEATVKTHVSRLLGKLDLRSRVQAAVL 204 Query: 228 AIRFG 232 A G Sbjct: 205 ARELG 209 >gi|320008415|gb|ADW03265.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 1015 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 4/116 (3%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTER 177 + G V +LA I G + + + + LT R Sbjct: 896 AHAVALRLGAVPLVENIELLAGRGRIALAGQDGTLGDEPARPAEPVPAVDAIESFGLTSR 955 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E +L GYT+ IAE+L +S T + ++ + KL+ +R +A A A RF Sbjct: 956 EQEVHRLVAAGYTNRRIAEELYISPKTASVHVSNILAKLNVSSRGEAAALAHRFRL 1011 >gi|297191143|ref|ZP_06908541.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723336|gb|EDY67244.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 282 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 151 GACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +++ L S+ A +LT RE L G T+ AE+LGL TV Sbjct: 193 ALREELLAACARLAPGPSTPAPTNGGVSLTPRELDVLGCVASGATNATAAERLGLRPETV 252 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AYL SA KL A R++A+ A R G + Sbjct: 253 KAYLRSAMRKLGARTRLEAVVAARRAGLL 281 >gi|49078420|gb|AAT49783.1| PA3604 [synthetic construct] Length = 218 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ +LT ++ L + +G +++IA L +S TV A++ + KL+ R QA Sbjct: 147 SAGLASLTPQQFRVLTMVCEGLLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAALL 206 >gi|39996395|ref|NP_952346.1| LuxR family DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983275|gb|AAR34669.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] Length = 216 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + S+++ LT RE LQL +G ++E+A L +SV TV + KL + Sbjct: 141 RRGRPESASSIRLTPREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSI 200 Query: 222 IQAIAKAIRFGY 233 AIR G Sbjct: 201 ADLTKFAIREGL 212 >gi|330868990|gb|EGH03699.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331011382|gb|EGH91438.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 74 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +E+ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N Sbjct: 1 MEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCN 60 Query: 221 RIQAIAKAIRFGY 233 + A +A G Sbjct: 61 KTAAAVQAALSGM 73 >gi|297538851|ref|YP_003674620.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297258198|gb|ADI30043.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 202 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTE 176 P+ + + G + F ++ + E ++ + I + S LTE Sbjct: 88 IPMSVRAIRAGAIDFLTK--PVTREKLMASVRLALIESEKILTERANHQNVQSHLAELTE 145 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 RE + LA G++++EIA +LG+S TV + K A N + A Sbjct: 146 RERDVMALAVQGHSNKEIARQLGISHRTVEIHKSKVMHKTGATNLLDLARIAHE 199 >gi|226304720|ref|YP_002764678.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183835|dbj|BAH31939.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 243 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++ +AA LT++E +L G G ++ EI+ LS TV Y+ KL Sbjct: 134 LVRRIRSEQESGTAAALLTDQELLIFELIGKGLSNREISTHAELSEKTVKNYVSRILEKL 193 Query: 217 DAVNRIQAIAKAIRF 231 R QA A + Sbjct: 194 GLERRTQAAVLATKL 208 >gi|159460272|gb|ABW96538.1| putative regulatory protein [Streptomyces spiroverticillatus] Length = 429 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 75/229 (32%), Gaps = 23/229 (10%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S++ LT + +S + L + + A + A + I + + Sbjct: 210 ISDDQLTQELLASQPAAAAWLVRLARSMGDERLAFKCVVRA------ESFILKSWGFRSP 263 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAG 117 + + L P W + ++ SS +L L A Sbjct: 264 YAAALHAKGLFEKNPDKLRAACELYPDGWASASAAEDLAQTWSSLRLGRDRAAEQLKRAA 323 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 G+ + G + L + E +V + R+ +LT+ Sbjct: 324 A------GYERAG----AARDLARVASKLRELGVRSGRV-RRPMRCDGHRTG---SLTDT 369 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 E + L G T+ ++ +L +S HTV +L K++ +R++ Sbjct: 370 EFAVADLVSQGLTNVQVGRQLYISAHTVAFHLKKIFRKMEVSSRVELAR 418 >gi|149927806|ref|ZP_01916057.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149823428|gb|EDM82659.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 209 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L++RE +++ G EIA++L LS TV+ Y K+ + Sbjct: 139 EDSEKPLHATLSDREFQTIRMIAAGKKLSEIADELSLSPKTVSVYRARILEKMRMKTNGE 198 Query: 224 AIAKAIRFGYI 234 A+ G I Sbjct: 199 LTRYALENGLI 209 >gi|126439631|ref|YP_001058659.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126219124|gb|ABN82630.1| DNA-binding response regulator [Burkholderia pseudomallei 668] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 14/184 (7%) Query: 65 PNILIETYGDDFLFHFNSGLLP---IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 ++ D P +I E + + G I Sbjct: 27 DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAADGLAMLTAIRDGYPSVRVIVLT 86 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSA 170 + + +L+ ++ + + + A Sbjct: 87 MLDNPVLMHTMRQAGALAVLSKRGDLDELPRALAAVYQGRPFVGTHAGAAGGAAARGTDA 146 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L+ RE ++L G T +IA + G S+ TV+ + +A KL + + A Sbjct: 147 PRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 206 Query: 231 FGYI 234 G + Sbjct: 207 NGLV 210 >gi|330893152|gb|EGH25813.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 81 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ +LT ++ L + +G +++IA +L +S T+ A++ + KL R Q Sbjct: 8 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 67 Query: 224 AIAKAIRF 231 A + Sbjct: 68 AALLLQQL 75 >gi|329905999|ref|ZP_08274320.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] gi|327547387|gb|EGF32216.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] Length = 223 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I F+ + LT R+ L + ++EIA +L LS TV A+ Sbjct: 136 AVSTKMIERFVRAPVVAVNPLDALTTRQLQILTMIAGRKGTKEIAFELDLSEKTVAAHRA 195 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +L + + + A+R G + Sbjct: 196 QIMERLGVRDVVGLVLLAVRHGLV 219 >gi|258655312|ref|YP_003204468.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558537|gb|ACV81479.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 867 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 8/215 (3%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 + R+ + + L ++ + + D + Sbjct: 660 AVFSALAERMWMTGVPDDRVIQDAPGELARLLDVPGTSWAAGDLAVWLARLGLLADPTVT 719 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 P + + + + + R A + + Sbjct: 720 VA----EPFALTLVGQW---DRAARWWHRAGESFAEAMAWADSPITADRVRAVELLDALG 772 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + + + V R++ A LT R+ +L G+T+ EIA++L Sbjct: 773 AVGSADRLRSGLRRDGVVAVPPRPRAATRANPA-GLTNRQLDVAKLVARGFTNAEIADRL 831 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +S T + ++ + KL NR + +A G Sbjct: 832 FISTKTADHHVSAVLAKLGVGNRRAVVVQADELGL 866 >gi|255036046|ref|YP_003086667.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254948802|gb|ACT93502.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 16/103 (15%) Query: 148 EAHGACYQVIT----------DFLELFKKRSSAAR------NLTERETSCLQLAGDGYTS 191 E H A ++ + ++ + R NLT+RE L +++ Sbjct: 112 ELHAAVRSIMDGKPYLPDSVKEIIKTRESRPDPHDDFVSMYNLTKREVDILTEVAREFST 171 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+KL LS +TV Y S KL A N + A ++ I Sbjct: 172 AEIADKLCLSEYTVETYRKSIIRKLAAKNIASLVNFAHKWKLI 214 >gi|254510783|ref|ZP_05122850.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae bacterium KLH11] gi|221534494|gb|EEE37482.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae bacterium KLH11] Length = 416 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L G +++ IA KLG++ HTV ++ + + K+ NR A Sbjct: 184 QLTRREKQVLRLVSQGKSNKTIAAKLGITEHTVKLHMHNVSGKIGVSNRTAAAHF 238 >gi|296158349|ref|ZP_06841180.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295891293|gb|EFG71080.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177 P+ + K G + F E E+ + ++ + ++R++A R LT R Sbjct: 96 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESSSVQQQRAAAERLGKLTAR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206 >gi|51892161|ref|YP_074852.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855850|dbj|BAD40008.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 206 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L E E + L++ +G + EI +L LS TV ++ K+ NR QA+A+A+R Sbjct: 143 ETLREEEIAMLRMLAEGASYAEIGNRLYLSERTVRRHMNLLFDKMGVQNRTQAVAEAMRR 202 Query: 232 GYI 234 G + Sbjct: 203 GLL 205 >gi|239941331|ref|ZP_04693268.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987793|ref|ZP_04708457.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291444772|ref|ZP_06584162.1| two component response regulator MppU [Streptomyces roseosporus NRRL 15998] gi|291347719|gb|EFE74623.1| two component response regulator MppU [Streptomyces roseosporus NRRL 15998] Length = 230 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L +G T+ EI EKL ++ T ++ + KL NR+ A + G Sbjct: 164 LTAREQEIARLVAEGLTNAEIGEKLYITAGTAKTHIANVQAKLRVRNRVGIAAWSWENGL 223 >gi|225352276|ref|ZP_03743299.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157523|gb|EEG70862.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 223 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 29/54 (53%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 RE + L G+TS+EI KLG+ TV Y+ KL A NR QA+ + + Sbjct: 164 REREVMGLCSLGFTSKEIGIKLGIGEPTVKTYIRRVMKKLGAKNRTQAVIQWME 217 >gi|220921537|ref|YP_002496838.1| two component LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946143|gb|ACL56535.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 221 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT ++ L + +G +++IA +L +S TV A++ + KL +R QA+ Sbjct: 145 DLMRRLATLTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAV 204 Query: 226 AKAIRFG 232 + R G Sbjct: 205 IASSRIG 211 >gi|218780409|ref|YP_002431727.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761793|gb|ACL04259.1| two component transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 212 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 125 GFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSA-------ARNLT 175 + G + + ++ I + H + + EL R S +L+ Sbjct: 92 RAIEAGAMGYMTKKSAPEQLVTAIRKLHSGSRFLTEEAAELLALRVSRWSKGGSLLDSLS 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+ G+T+ EIA+ +SV TV+ Y KL+ N AI+ I Sbjct: 152 KRELQVLRHLASGHTNREIADSYHISVKTVDTYRARLLKKLNLRNNADISRFAIQNNLI 210 >gi|149912607|ref|ZP_01901141.1| two component transcriptional regulator, LuxR [Roseobacter sp. AzwK-3b] gi|149813013|gb|EDM72839.1| two component transcriptional regulator, LuxR [Roseobacter sp. AzwK-3b] Length = 217 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 43/93 (46%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + E ++ + + + S LTE E L+ A +G T++ IA ++GL+ Sbjct: 123 SLESVLRLILSGQTFLPSSVIEAPVNGSDGDELTEIELLILKFAAEGMTNKSIASQVGLN 182 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + KL A NR+QA+ A I Sbjct: 183 ETTVKMHMRAICRKLRASNRVQAVVIARNNALI 215 >gi|147673828|ref|YP_001216783.1| response regulator [Vibrio cholerae O395] gi|146315711|gb|ABQ20250.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] Length = 227 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS +TVN+Y KL+ Sbjct: 146 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPNTVNSYRYRLFAKLN 205 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 206 INGDVELTHLAIRHGIL 222 >gi|49079272|gb|AAT49874.1| PA1397 [synthetic construct] Length = 211 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146 + + ++ L I + G V+ +A E + Sbjct: 55 LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114 Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V+ + L + S LTER+ L+L G +++EI L +S Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQPDVLRLLAQGKSNKEIGRALDISH 174 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 +TV ++ S LD +R A K Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199 >gi|86140782|ref|ZP_01059341.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis MED217] gi|85832724|gb|EAQ51173.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis MED217] Length = 211 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ERE ++ A T ++IAEK+ LS TV Y + KL NR + AI+ Sbjct: 149 LKEREIEFIKHACTEMTYKQIAEKMFLSPKTVEGYREAVFQKLGLKNRTGLVIYAIKNNI 208 >gi|292486546|ref|YP_003529412.1| Fimbriae Z protein [Erwinia amylovora CFBP1430] gi|292897781|ref|YP_003537150.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291197629|emb|CBJ44723.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291551959|emb|CBA18996.1| Fimbriae Z protein [Erwinia amylovora CFBP1430] gi|312170615|emb|CBX78878.1| Fimbriae Z protein [Erwinia amylovora ATCC BAA-2158] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E ++L GYT EIA + ++ TV+ +A +L + ++ I A G Sbjct: 153 GLTPKELEVIRLFSSGYTLSEIARRQNRTISTVSTQKYNAMRRLGVSSNVELIRYAYAQG 212 Query: 233 YI 234 I Sbjct: 213 LI 214 >gi|16762530|ref|NP_458147.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144019|ref|NP_807361.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213420163|ref|ZP_03353229.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426302|ref|ZP_03359052.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584160|ref|ZP_03365986.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613147|ref|ZP_03370973.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647796|ref|ZP_03377849.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855646|ref|ZP_03383886.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289805447|ref|ZP_06536076.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289826435|ref|ZP_06545547.1| DNA-binding transcriptional activator UhpA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298776|pir||AH0963 Two-component system response regulator protein STY3992 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504835|emb|CAD03204.1| Two-component system response regulator protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139655|gb|AAO71221.1| two-component system response regulator protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 196 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 12/121 (9%) Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166 A I V G F S+ E+I H +L K Sbjct: 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 130 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT+RE + G +EIA +LGLS V+ + + KL N ++ Sbjct: 131 AAGRQDPLTKRERQVEEKLAQGMAVKEIAAELGLSPKMVHVHRANLLEKLGVSNDVELAH 190 Query: 227 K 227 + Sbjct: 191 R 191 >gi|315505839|ref|YP_004084726.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412458|gb|ADU10575.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195 ++A + A +++ + + + A L T RE L L ++ EIA Sbjct: 117 RVVARGEALLAPTVTRRLLDRYADRLPAPAPAGDVLAVLTAREREVLTLTARALSNAEIA 176 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV ++ + KL +RIQA+ A G + Sbjct: 177 ARLHLSTATVKTHVSAILTKLSLRDRIQAVVLAYDTGLV 215 >gi|104779522|ref|YP_606020.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila L48] gi|95108509|emb|CAK13203.1| putative DNA-binding response regulator, LuxR family [Pseudomonas entomophila L48] Length = 217 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 VI L +KR + LT+R+ L+L G T+ IA+ LGLSV TV A+ Sbjct: 128 AVLPMVIGQALRHSRKRTSAPPQAPLTKRQLEILRLIARGETTRSIADGLGLSVKTVEAH 187 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 +L + + A+R G I Sbjct: 188 RSQIMHRLQIHDVPGLVLFAVREGII 213 >gi|104782609|ref|YP_609107.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95111596|emb|CAK16317.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 262 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 65/223 (29%), Gaps = 20/223 (8%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 + ++ ++ N+ + +S + + D + D F Sbjct: 29 SLVRVLNEYVQIDNWVVLIFSSQHVEVVSLPEVADAEEVDA-FIHRYVTELYLL-DPFYI 86 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + + + + + + V+L + + Sbjct: 87 ANRENPQGGFFHLLDIAPEYFLETEYYHQYFAQYISVDEAQYNVQLDADRTLCISI-GSK 145 Query: 139 LMLANEVIIEAHGA---CYQVITDFLELFKKR------SSAARN--------LTERETSC 181 + + E I ++ + + LT RE+ Sbjct: 146 VRFSQEQITILDIIKPWVTALMHQRMCFESDAEKNLAEPPPRQETLAQLGAQLTTRESDV 205 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+L G++++EIA KL LS T+ + + KL+ ++ + Sbjct: 206 LRLLLSGFSNKEIAGKLALSAETIKVHRRNIYAKLNIKSQSEL 248 >gi|221209586|ref|ZP_03582567.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] gi|221170274|gb|EEE02740.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] Length = 277 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 61/220 (27%), Gaps = 12/220 (5%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 H + L+ +L D Sbjct: 57 HARLRQFGFSTLGYGAYEMIGRRILCAHLLRDL--APPSFMQPYIEGALYESDPRFAQVR 114 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVIFTSE 137 P+ W+ + E + G V G L +G+ F + + + Sbjct: 115 QSGFPVAWRLDEIEAAAQRGGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAVNVTS 174 Query: 138 FLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191 + + VI A V L + R + R L + + L+ G + Sbjct: 175 ETHGTDWIDDRVIGGALAVSLAVHRVALPFLEARVARMRGFALGDEQQQVLERLVHGLSD 234 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +EIA L S+H V ++ S + NR Q A R Sbjct: 235 QEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274 >gi|168700623|ref|ZP_02732900.1| two component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 205 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 5/117 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175 + P ++G V ++ +++ ++ + L +R + LT Sbjct: 90 SVPTTARAMRSGAVHV--LEKPYDDQEMLDTVHEALRLDAEKRTLRAQRIAIQARLTALT 147 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L L G ++ IA +L +S +V + G+ KL N + + + G Sbjct: 148 AREREVLDLVVSGKANKVIARELAVSEKSVEFHRGNMMRKLKVDNVAELVRLVLTSG 204 >gi|163745624|ref|ZP_02152984.1| two-component response regulator [Oceanibulbus indolifex HEL-45] gi|161382442|gb|EDQ06851.1| two-component response regulator [Oceanibulbus indolifex HEL-45] Length = 209 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 3/93 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEI 194 N+ +++ Q+ + + A LT +E + G ++ EI Sbjct: 104 EKPFNNQDMLDLINTALQIDAARRKGIEADVENAELLARLTPQEHRVFERVAAGLSNREI 163 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A ++ +SV TV + KL+A + + + Sbjct: 164 ASEMDISVKTVEVHRARVMRKLEANSVAELVRF 196 >gi|91778297|ref|YP_553505.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690957|gb|ABE34155.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 249 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A + I L + NL+ R+ ++L G+T++ IA +LG++ TV +L Sbjct: 163 ALTEPIAQIQALQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARELGVAEGTVKVHLSV 222 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 L NR AI A+ G++ Sbjct: 223 IFRALGVHNRSTAI--AVINGWL 243 >gi|28871830|ref|NP_794449.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. tomato str. DC3000] gi|28855083|gb|AAO58144.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. tomato str. DC3000] Length = 199 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%) Query: 155 QVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++ L R LT R+ L L G T++EIA +L S HTV + Sbjct: 112 HLLQRIQALLSGEPPEPRTIASTPLTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRS 171 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + L A R +A A R G + Sbjct: 172 HVQAILTILQASCRTEAADTARRLGLV 198 >gi|56477577|ref|YP_159166.1| putative two-component response regulator [Aromatoleum aromaticum EbN1] gi|56313620|emb|CAI08265.1| putative two-component response regulator [Aromatoleum aromaticum EbN1] Length = 208 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182 +G+V S +L + V G Y + + A+ LT +T + Sbjct: 96 RGGASGFVSKASSGEVLRSAVRCVLEGGIYAPSEPEGGAKRSGAPASERFGLTAGQTRVM 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L G ++ EIA+ LGLS TV ++ + L +R QA+ R G Sbjct: 156 ELLAQGKSNREIADLLGLSEGTVKVHMSAIFRALHVSSRAQALIVIARHG 205 >gi|269217550|ref|ZP_06161404.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269212485|gb|EEZ78825.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 202 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 6/154 (3%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH--KNGYVIFTSEF--LMLA 142 + E + + R+ + + S F Sbjct: 49 VDVVLADVEMPVMDGIAAASRIRKEHPDVKILMVTTFGRPGYLRRAMEAGASGFVVKDAP 108 Query: 143 NEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 ++ + A Q + D + ++++ LTERE L+ DG T+ +++ L L Sbjct: 109 SDSLASAVRKVMAGQRVVDPDLAAESLAASSNPLTEREQDVLRATSDGGTTADVSRSLFL 168 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV YL SA K A R +A+ A G++ Sbjct: 169 SQGTVRNYLSSAIHKTGARTRAEAVVIARDNGWL 202 >gi|227891992|ref|ZP_04009797.1| two-component response regulator [Lactobacillus salivarius ATCC 11741] gi|227866196|gb|EEJ73617.1| two-component response regulator [Lactobacillus salivarius ATCC 11741] Length = 201 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L +++E+A+K LS T+ Y+ S K +R++A+ A + Sbjct: 140 PLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRN 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|187919554|ref|YP_001888585.1| two component LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717992|gb|ACD19215.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 257 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +T L + NL+ R+ ++L G+T++ IA LG++ TV +L L Sbjct: 176 LTQIQALQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARDLGVAEGTVKVHLSVIFRAL 235 Query: 217 DAVNRIQAIAKAIRFGYI 234 NR AI A+ G++ Sbjct: 236 GVHNRSTAI--AVINGWL 251 >gi|288917777|ref|ZP_06412139.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350833|gb|EFC85048.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 308 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L +++ QV T L R L+ERE + L+L +G+ ++EI +L Sbjct: 218 LPPDMLGSLLRQVQQVSTQVLA---PRGLTFSGLSERELTVLRLVAEGHDTQEIGRRLNY 274 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV L T + NR A+A A+R G + Sbjct: 275 SERTVKNVLQDVTRRFGLRNRSHAVAFALRQGLL 308 >gi|134101943|ref|YP_001107604.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914566|emb|CAM04679.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 156 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%) Query: 155 QVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ +F + + + LT RE L DG + EEIA+KL S T+ L Sbjct: 73 ALVEEFERIREHVLAPRDLTMHGLTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILY 132 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +L NR A+A AIR G I Sbjct: 133 QFMKRLGLRNRAHAVAYAIRLGII 156 >gi|113866184|ref|YP_724673.1| response regulator [Ralstonia eutropha H16] gi|113524960|emb|CAJ91305.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178 +R G + L+ A + + + D L + + L+ERE Sbjct: 94 IRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGGLDKPTEQPVHQMLSERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + IA++L LSV TV+ Y K+ AI+ G + Sbjct: 154 FQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209 >gi|39935178|ref|NP_947454.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39649029|emb|CAE27550.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 211 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTE 176 P+ + K G V F ++ ++ +++A A ++ E+ KR+ LT Sbjct: 91 VPMTVRGMKAGAVDFLTK--PFRDQEMLDAVSAAVELDRRRREMEHKRNEIVHRFDALTP 148 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE ++ G ++ +A LGLS TV + G K+ A + + A Sbjct: 149 REKQIFEMVSAGSMNKNVAADLGLSEITVKIHRGRVMKKMGARSLADLVRMA 200 >gi|17547031|ref|NP_520433.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429332|emb|CAD16019.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 238 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 29/66 (43%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE S LQL +G T+ ++ L LS T+ Y KL N + A Sbjct: 151 STWETLTARERSVLQLVAEGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVGNVTGLVLAA 210 Query: 229 IRFGYI 234 I G I Sbjct: 211 IGLGLI 216 >gi|315647520|ref|ZP_07900622.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315276959|gb|EFU40300.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 216 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198 ++ ++ + A NLT RE +L + + EIA+ L Sbjct: 119 EAVRGEMMLPSKVAAKLAARLRTTGAPQFPAQHYNLTPRELQIAKLMTEYKNNREIADML 178 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ TV Y+ K+ +R +AI Sbjct: 179 YITEGTVRNYISVIYEKIGMNDRTKAI 205 >gi|256158896|ref|ZP_05456746.1| Monoamine regulon transcriptional regulator [Brucella ceti M490/95/1] gi|256254270|ref|ZP_05459806.1| Monoamine regulon transcriptional regulator [Brucella ceti B1/94] Length = 245 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229 >gi|213966477|ref|ZP_03394650.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum SK46] gi|213950876|gb|EEB62285.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum SK46] Length = 278 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G+T+ E AE++G+ TV +YL S KL A R +A+ A R G Sbjct: 216 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 275 >gi|150009195|ref|YP_001303938.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256841751|ref|ZP_05547257.1| transcriptional regulator [Parabacteroides sp. D13] gi|298377017|ref|ZP_06986971.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19] gi|149937619|gb|ABR44316.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256736645|gb|EEU49973.1| transcriptional regulator [Parabacteroides sp. D13] gi|298266001|gb|EFI07660.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19] Length = 203 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE + G T+ EIA++L LS HTV + + KL + AI Sbjct: 134 QSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVN 193 Query: 232 GYI 234 + Sbjct: 194 KLV 196 >gi|111024873|ref|YP_707293.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110823852|gb|ABG99135.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 287 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 41/108 (37%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + V H ++ R LT RE L Sbjct: 179 RDIHADLRAVAQHVADTAVRSRLHELSDRIAALRQPSNATRPGREMQLTPREIDVLAHVA 238 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA++L + TV +YL +A KL A +R +A+ A +F + Sbjct: 239 LGCTNSEIAQRLSVGPQTVKSYLRAAMNKLSACSRQEAVVTARKFKLL 286 >gi|328908051|gb|EGG27810.1| LuxR response regulator receiver [Propionibacterium sp. P08] Length = 221 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++R+ + L G +++EI++ L L+ TV ++ L R QAI ++ Sbjct: 156 GLSDRQAEVMDLIAAGQSNKEISKTLFLAEKTVKNHINQIFATLGVTTRAQAIVLWLQ 213 >gi|302545087|ref|ZP_07297429.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302462705|gb|EFL25798.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 273 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 17/112 (15%) Query: 137 EFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARN----------LTERET 179 + L + H ++ L S A LT RE Sbjct: 157 DRDDLDGSFLNAVHEIASGHGWISPTLVRSLLRPPSPADSPAHRAVAATPYPARLTARER 216 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L G + EIA L ++ TV ++ + K +R Q A A Sbjct: 217 EVVALVTSGLNNGEIAATLHVAESTVKFHVSNILHKTGCRDRSQLTAHARAL 268 >gi|297193410|ref|ZP_06910808.1| large transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151764|gb|EFH31341.1| large transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 141 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 4/81 (4%) Query: 151 GACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 ++ + + R L+ RE +LAG G T+ EIA L LS TV Sbjct: 44 ARARALLRSYQPAKETRPPGRPSYGDRLSPREREVAELAGTGLTNREIATTLHLSPRTVE 103 Query: 207 AYLGSATVKLDAVNRIQAIAK 227 ++ A KL +R Sbjct: 104 QHVARAMRKLGTASRQHLARI 124 >gi|270294378|ref|ZP_06200580.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275845|gb|EFA21705.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 204 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + G T++ IA+KL LS+HTV + + KL + AI Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|219683566|ref|YP_002469949.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|219621216|gb|ACL29373.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] Length = 224 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 Q L K A +++ E + ++L +G ++ IAE+ G S TV Y+ A Sbjct: 147 QQAHERLLMQGK---PAIMSMSPNEQAVMELCSEGLSTRTIAEETGDSESTVKTYISRAM 203 Query: 214 VKLDAVNRIQAIA 226 KL A +R +A+A Sbjct: 204 RKLRAKSRAEAVA 216 >gi|218129321|ref|ZP_03458125.1| hypothetical protein BACEGG_00898 [Bacteroides eggerthii DSM 20697] gi|317475290|ref|ZP_07934556.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|217988498|gb|EEC54819.1| hypothetical protein BACEGG_00898 [Bacteroides eggerthii DSM 20697] gi|316908544|gb|EFV30232.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 204 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + G T++ IA+KL LS+HTV + + KL + AI Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|172041269|ref|YP_001800983.1| LuxR family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852573|emb|CAQ05549.1| putative transcriptional regulator (LuxR family) [Corynebacterium urealyticum DSM 7109] Length = 291 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + + C Q+++ R L+ RE L G+T+ E AE+ Sbjct: 200 GRVEDETLRRDLEALCTQMVSPV------RVKQTTKLSARELDVLSCVALGHTNVEAAEE 253 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 254 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 288 >gi|160891075|ref|ZP_02072078.1| hypothetical protein BACUNI_03522 [Bacteroides uniformis ATCC 8492] gi|317480984|ref|ZP_07940064.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] gi|156859296|gb|EDO52727.1| hypothetical protein BACUNI_03522 [Bacteroides uniformis ATCC 8492] gi|316902877|gb|EFV24751.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] Length = 204 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + G T++ IA+KL LS+HTV + + KL + AI Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|149908586|ref|ZP_01897248.1| putative tetrathionate reductase complex: response regulator [Moritella sp. PE36] gi|149808420|gb|EDM68357.1| putative tetrathionate reductase complex: response regulator [Moritella sp. PE36] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LTERE L L G +++IA L ++V TV + S K +A + + +++ Sbjct: 153 QSLTERELDILLLLVQGKRNQQIANDLCIAVRTVEVHRSSLMKKFNAKTIAELV---LQY 209 Query: 232 GY 233 G Sbjct: 210 GL 211 >gi|70732224|ref|YP_261980.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68346523|gb|AAY94129.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 266 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 48/186 (25%), Gaps = 26/186 (13%) Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + D F + + + + R + I F + Sbjct: 72 QDYLNGLYLLDPFYVASREQSRSGLLRLAEVAPEHFQLTEYYQRYFRLNVVADEIQFNCQ 131 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL---ELFKKRSSAARN---- 173 L + + A I ++ L + + + Sbjct: 132 LADGRTLCLSL-GSRQRFAPPQIALLSLIEPWVVALLRQRLPHESIEQDNPAQLHPMPDW 190 Query: 174 ---------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT RE +L G +++EIA KL +S TV + KL Sbjct: 191 RSQLDHSMQQLRGAQLTARELDVGRLMLSGCSNKEIARKLEISAETVKVHKKHIYSKLGI 250 Query: 219 VNRIQA 224 ++ + Sbjct: 251 KSQSEL 256 >gi|326382928|ref|ZP_08204618.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198518|gb|EGD55702.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 217 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L + S LT +E L G G T+ +IA+++ L+ T+ Y+ Sbjct: 134 RSTAALLARLR-DGEPSDPLARLTGQEREVFTLIGQGMTNRQIADRMFLAEKTIKNYVSR 192 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 KLD R Q A Sbjct: 193 ILSKLDMQRRTQVAVLATEL 212 >gi|323495672|ref|ZP_08100743.1| response regulator [Vibrio sinaloensis DSM 21326] gi|323319307|gb|EGA72247.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 ISGDVELTHLAIRHGML 209 >gi|300778493|ref|ZP_07088351.1| response regulator transcription regulator protein [Chryseobacterium gleum ATCC 35910] gi|300504003|gb|EFK35143.1| response regulator transcription regulator protein [Chryseobacterium gleum ATCC 35910] Length = 203 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 32/65 (49%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + KR++ L+ RE +L DG + EIA KL + + TV+ Y KLD N Sbjct: 132 LIIQNKRNNPVEKLSSREYEIFKLLADGNGNLEIANKLNIQMSTVSTYKKRIFQKLDVTN 191 Query: 221 RIQAI 225 + I Sbjct: 192 IAELI 196 >gi|256379888|ref|YP_003103548.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924191|gb|ACU39702.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT+RE L+L G G ++ ++ ++L +S TV Y+ KL NR+QA A Sbjct: 153 QRLTDREVEVLELLGLGMSNADVGQRLHMSEATVKTYVSRLLAKLGLTNRVQAALLARDA 212 Query: 232 GY 233 G Sbjct: 213 GL 214 >gi|153802604|ref|ZP_01957190.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|124121867|gb|EAY40610.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] Length = 267 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 27 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 84 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 203 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIA+ L +S TV + +L + + Sbjct: 204 SPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYAQLHVSSLSEL 253 >gi|29829791|ref|NP_824425.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606900|dbj|BAC70960.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 13/155 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFP--------VRLGFHKNGYVIFTSEFLMLAN 143 + + + R G L P VR G + S Sbjct: 87 LTYSREPKVVAEALRRGASGYLVHGEFTVPELITAVRDVRRGRLTVSSSLSVSYEPNGNP 146 Query: 144 EVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + + +R+ L+ RE + L G + +IA +S Sbjct: 147 SHLQSVVAQSSKAWPTRVTGLPRRTVNRLDFGLSSREVEVMDLIAAGMNNRQIAATCFIS 206 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI---RFGY 233 TV ++ KL + R +AIA + R G+ Sbjct: 207 EKTVKNHINRIFAKLHSATRSEAIAHWLGTAREGW 241 >gi|255744289|ref|ZP_05418242.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262147286|ref|ZP_06028085.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|255738229|gb|EET93621.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262031280|gb|EEY49895.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] Length = 265 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 25 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 82 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 141 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 142 PRSFPREQITALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 201 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIAE L +S TV + +L + + Sbjct: 202 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 251 >gi|319945743|ref|ZP_08019994.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319748103|gb|EFW00346.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 228 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ E +Q G G +++EIA KL LS T+ YL + KL+ +R Q +++ G Sbjct: 157 LSLTEWRIIQQVGFGESNKEIAAKLFLSEGTIRNYLSTILSKLNLRDRTQLAIWSVQKG 215 >gi|291528659|emb|CBK94245.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale M104/1] Length = 218 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +E S ++L +G + EIA++L LS TV Y+ KL +R Q Sbjct: 160 SGKELSIIELVAEGLNNREIADELYLSEGTVRNYISVILEKLQLRDRTQLA 210 >gi|293393060|ref|ZP_06637377.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291424594|gb|EFE97806.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 209 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H C + L ++ ++ LT RE L G + + IA +L LS TV+ + Sbjct: 123 HYLCADAV-KALRGGQQDANVLAALTPREREVFYLLVKGESVKGIAYQLELSHKTVHVHR 181 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL + I+ + A++ + Sbjct: 182 ANVLGKLQCSSTIELVHFALQHQLL 206 >gi|153216991|ref|ZP_01950755.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|153820512|ref|ZP_01973179.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|254848338|ref|ZP_05237688.1| transcriptional regulator [Vibrio cholerae MO10] gi|297578812|ref|ZP_06940740.1| transcriptional regulator [Vibrio cholerae RC385] gi|298498687|ref|ZP_07008494.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|124113973|gb|EAY32793.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|126508945|gb|EAZ71539.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|254844043|gb|EET22457.1| transcriptional regulator [Vibrio cholerae MO10] gi|297536406|gb|EFH75239.1| transcriptional regulator [Vibrio cholerae RC385] gi|297543020|gb|EFH79070.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 227 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 146 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 205 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 206 INGDVELTHLAIRHGIL 222 >gi|296447677|ref|ZP_06889595.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296254818|gb|EFH01927.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 233 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 8/104 (7%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--------NLTERETSCLQLAGDGYT 190 L +++ + + R+ A LT RE L G T Sbjct: 128 LDAIADLLAGRSPISSTIARTIIRRISGRAPAHEQAAAIAAERLTPREMDILHGIAKGLT 187 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+A L +S TV A++ + KL + NR +A+ +A R G I Sbjct: 188 YAELATHLQISRQTVPAHIKNVYRKLQSNNRSEAVYEASRRGLI 231 >gi|296118869|ref|ZP_06837442.1| transcriptional regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] gi|295967967|gb|EFG81219.1| transcriptional regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] Length = 294 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + E C Q+++ R + L+ RE L G+T+ E AE+ Sbjct: 203 NRVEDESLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 256 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 257 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 291 >gi|289641922|ref|ZP_06474077.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508222|gb|EFD29166.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 459 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 +E +L E + F + A LT RE ++L G + EIA Sbjct: 359 AEDEILLARSDRELGAVASRAADLFRPVTAADDPVASLLTARERRIVELMVTGARNSEIA 418 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++L LS TV +++ S KL + NR +A+++ Sbjct: 419 DRLVLSEDTVKSHVRSVLRKLRSANRAEAVSR 450 >gi|270313641|gb|ACZ73896.1| FixJ [Azospirillum brasilense] Length = 230 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE LQ +G +++ IA +L +S TV + K+ A + + A+ G Sbjct: 165 SLTPRERDVLQWLVEGKSNKVIAFELSISPRTVEIHRARVMEKMRADSLPSLVRMALAAG 224 Query: 233 Y 233 Sbjct: 225 I 225 >gi|154250616|ref|YP_001411440.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] gi|154154566|gb|ABS61783.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] Length = 279 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/248 (11%), Positives = 64/248 (25%), Gaps = 30/248 (12%) Query: 7 TGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 +G+ + SL ++ + ++ I +I + + + Sbjct: 20 SGRLAESLSAGDVHVSATKLATGLRYL-VPETQIYIGFYRADVPPIIIDFDG-RDEWNEG 77 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D F + + + + I + + L Sbjct: 78 YTDGKYLL-DPTYDQFVARSESVCLSPKEMFPPDFRKSDYYLSYYRPYGMVDEICYLLYL 136 Query: 125 GFHKNGYVI---------FTSEFLMLANEVIIEAHGACYQVITDFLELFKK--------- 166 YV F++ V+ A + Sbjct: 137 EHDLACYVSLMRLADKPAFSTTEYRRLEAVLPAVEAAAQHFWALLDRQDNEEQDRSFQLH 196 Query: 167 -------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 R +L++RE L G + + LG++ TV ++ VKLD Sbjct: 197 QILSTAYRRFGGDSLSDREKEVTNLLLKGLPPKSVGRMLGIAPGTVRNHIKRIYVKLDVR 256 Query: 220 NRIQAIAK 227 ++ + +A Sbjct: 257 SQAELLAL 264 >gi|70731557|ref|YP_261298.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345856|gb|AAY93462.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 219 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + VI L +K+ NLT R+ L+L G ++ EIA LGLS+ TV Sbjct: 129 AIAHTVINQALTRAQKQPPPPEQNHNLTARQLEILRLIVRGKSTREIALGLGLSIKTVET 188 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +L + + A+R I Sbjct: 189 HRSQIMKRLQIFDVAGLVLFAVRERII 215 >gi|297538155|ref|YP_003673924.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257502|gb|ADI29347.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 215 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + +L++RE + L G+T EIAEKL LSV T++ Y KL+ + + Sbjct: 144 METEKAPHESLSDREFQTMTLIASGFTVGEIAEKLALSVKTISMYRTRMLEKLNLRHNAE 203 Query: 224 AIAKAIRFGYI 234 AI+ + Sbjct: 204 LTHYAIKNHLV 214 >gi|261221423|ref|ZP_05935704.1| two component transcriptional regulator [Brucella ceti B1/94] gi|265997385|ref|ZP_06109942.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|260920007|gb|EEX86660.1| two component transcriptional regulator [Brucella ceti B1/94] gi|262551853|gb|EEZ07843.1| two component transcriptional regulator [Brucella ceti M490/95/1] Length = 254 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 186 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238 >gi|258653054|ref|YP_003202210.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556279|gb|ACV79221.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 905 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 33/76 (43%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + +LT E + L G + +IA LG+S TV +++ +A KL Sbjct: 828 RTARPLTPRAHFGITSLTGTERRVVGLVASGKANSDIAALLGISRRTVESHVSAAYRKLG 887 Query: 218 AVNRIQAIAKAIRFGY 233 +R+ A+R G Sbjct: 888 VNSRVAMARIALRHGI 903 >gi|254381952|ref|ZP_04997315.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340860|gb|EDX21826.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 228 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE + L G ++++IA +S TV ++ KL + R +AIA+ Sbjct: 161 GLSSREEEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFAKLQSTTRSEAIAR 215 >gi|187919191|ref|YP_001888222.1| two component LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717629|gb|ACD18852.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 215 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 44/114 (38%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G S ++ A ++E + L S LT R Sbjct: 97 VTQAVRAGASGYVLKDSPSTEIIQAIGAVLEGKQFFSAGLGARLIQASAMQSPVERLTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ LSV TV + + KLD + + I A+ Sbjct: 157 ERDILDALAEGLSSKQIAQRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210 >gi|114706362|ref|ZP_01439264.1| probable transcriptional regulator protein, LuxR family [Fulvimarina pelagi HTCC2506] gi|114538223|gb|EAU41345.1| probable transcriptional regulator protein, LuxR family [Fulvimarina pelagi HTCC2506] Length = 260 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE S L+L G ++ +A +L ++ HTV +L KL NR +A A Sbjct: 186 SRLDTLTPRELSVLELVAQGKPNKLVANRLSITEHTVKLHLHKLMGKLHVTNRTEAAAI 244 >gi|15964305|ref|NP_384658.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307307041|ref|ZP_07586780.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320121|ref|ZP_07599541.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073482|emb|CAC45124.1| Transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|306894167|gb|EFN24933.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306901981|gb|EFN32580.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 215 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 38/63 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT +++ L + +G +++IA +LG+S T+ A++ + +KL+ +R QA+ + Sbjct: 148 RLQTLTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLS 207 Query: 230 RFG 232 + G Sbjct: 208 KLG 210 >gi|17546316|ref|NP_519718.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428613|emb|CAD15299.1| probable response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|99652817|dbj|BAE94659.1| response regulator [Ralstonia solanacearum] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176 P+ + K G V F + E +++ +A LT Sbjct: 97 VPMAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARTEDSAAREQKAANDLLSRLTT 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209 >gi|330820172|ref|YP_004349034.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] gi|327372167|gb|AEA63522.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] Length = 496 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 1/114 (0%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P R + E + + EA GA +R +A +L+ RET Sbjct: 384 PWRAALGDDEAARCLREEVE-RGRLCGEAVGALVAQGAPVARRTARRGTAGPHLSARETE 442 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ G +++E A++L +S TV ++ + KLD R A KA G I Sbjct: 443 VLRVISRGASNKEAAQELTMSPSTVRTHVENVFRKLDCSTRAAATLKASSLGLI 496 >gi|288922546|ref|ZP_06416727.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346101|gb|EFC80449.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 952 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 62/215 (28%), Gaps = 3/215 (1%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPNILIETYGDDFLF 78 R + + + + + + + L Sbjct: 720 RWVELCRPYGCEHLFHTPWLLHAAIACARLGRHDQGKSLADEHLQLARHLGVARHISVGL 779 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + S +E RLE + + G + G Sbjct: 780 RIRALFEDADAASALLRESVELLEFSPARLEMARSLESLGHLLIETGHSRAGLEAIARGA 839 Query: 139 LMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + A ++ D ++ + LT E + LA DG+T+ +IAE+ Sbjct: 840 ELAAQCHAGRMVERLGSLLADSGRKVPGAQVQGLHALTPAERTAAGLAADGFTNRQIAEQ 899 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L LS TV +L A K+ +R Q A A+ G Sbjct: 900 LFLSEKTVETHLSRAYRKVGVRSRTQLAA-AMAAG 933 >gi|241763752|ref|ZP_04761799.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241366971|gb|EER61367.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 208 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Query: 148 EAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E G +++ E F R + LT RE L+ G +++IA+ LG+S Sbjct: 114 ELVGLVERMLDHAREAFAGYQQAASRDALLSKLTGREAQVLERIVAGRLNKQIADDLGIS 173 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + TV A+ + KL+A + A+ Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIAL 201 >gi|227506399|ref|ZP_03936448.1| regulatory family protein [Corynebacterium striatum ATCC 6940] gi|227197050|gb|EEI77098.1| regulatory family protein [Corynebacterium striatum ATCC 6940] Length = 293 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++ E C Q+++ R + L+ RE L G+T+ E AE+ Sbjct: 202 NRVEDEDLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 255 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 256 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 290 >gi|167839465|ref|ZP_02466149.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 269 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 9/186 (4%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSV 106 + + EL D S ++ + Q + Sbjct: 80 EPVDFELFGMTAAMHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDASSYWT 138 Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF 164 + +R + I H V L Sbjct: 139 GFLRRHGVADVVEVLLRDCGAAVAAFSLLRLAGDGRYSAAEIAALHAVQPVVEVALLPPL 198 Query: 165 K-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +R + LT RE +L DG +++ IA L L TV +L KL Sbjct: 199 RAVRGIRRIACGARLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVS 258 Query: 220 NRIQAI 225 NR + + Sbjct: 259 NRTELV 264 >gi|82699111|ref|YP_413685.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|163842464|ref|YP_001626868.1| monoamine regulon transcriptional regulator [Brucella suis ATCC 23445] gi|189023446|ref|YP_001934214.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225851728|ref|YP_002731961.1| monoamine regulon transcriptional regulator [Brucella melitensis ATCC 23457] gi|254690497|ref|ZP_05153751.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|254696618|ref|ZP_05158446.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|254701000|ref|ZP_05162828.1| Monoamine regulon transcriptional regulator [Brucella suis bv. 5 str. 513] gi|254709343|ref|ZP_05171154.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis B2/94] gi|254731531|ref|ZP_05190109.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|256030866|ref|ZP_05444480.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|256045986|ref|ZP_05448858.1| Monoamine regulon transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|256112698|ref|ZP_05453619.1| Monoamine regulon transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|256264760|ref|ZP_05467292.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260169768|ref|ZP_05756579.1| Monoamine regulon transcriptional regulator [Brucella sp. F5/99] gi|260546468|ref|ZP_05822208.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260563267|ref|ZP_05833753.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|261759311|ref|ZP_06003020.1| bacterial regulatory protein [Brucella sp. F5/99] gi|294851595|ref|ZP_06792268.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL 07-0026] gi|82615212|emb|CAJ10153.1| Bacterial regulatory protein, LuxR family [Brucella melitensis biovar Abortus 2308] gi|163673187|gb|ABY37298.1| Monoamine regulon transcriptional regulator [Brucella suis ATCC 23445] gi|189019018|gb|ACD71740.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225640093|gb|ACO00007.1| Monoamine regulon transcriptional regulator [Brucella melitensis ATCC 23457] gi|260096575|gb|EEW80451.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260153283|gb|EEW88375.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|261739295|gb|EEY27291.1| bacterial regulatory protein [Brucella sp. F5/99] gi|263095169|gb|EEZ18838.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|294820184|gb|EFG37183.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL 07-0026] gi|326408219|gb|ADZ65284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326537934|gb|ADZ86149.1| monoamine regulon transcriptional regulator [Brucella melitensis M5-90] Length = 245 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229 >gi|15420719|gb|AAK97431.1|AF382827_1 transcriptional activator GacA [Azotobacter vinelandii] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 7/122 (5%) Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172 FP RL GY+ + + ++ A + H I L L ++ S Sbjct: 89 FPTRLMQAGAAGYLTKGAALDEMVQAIRQVFAGHRYISPQIAQQLALKAFQPQQSGSPFD 148 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE + + + I++KL LS TVN Y KL + ++ A+R G Sbjct: 149 LLSEREIQIALMIANCEKVQSISDKLCLSPKTVNTYRYRIFEKLSINSDVELALLAVRHG 208 Query: 233 YI 234 + Sbjct: 209 MV 210 >gi|318060318|ref|ZP_07979041.1| LuxR family two component transcriptional regulator [Streptomyces sp. SA3_actG] gi|318079909|ref|ZP_07987241.1| LuxR family two component transcriptional regulator [Streptomyces sp. SA3_actF] Length = 222 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 34/87 (39%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A + + LT RE L L +G T+ +IA +LG+ TV Sbjct: 128 AAARRLIDRYHHANGPRATHAQARTAPLTPRERDVLALLAEGETNADIARRLGMRESTVK 187 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233 A++ L+ NR+QA A G Sbjct: 188 AHVSRILTALEVTNRVQAALVARDAGL 214 >gi|87199253|ref|YP_496510.1| LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134934|gb|ABD25676.1| transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 223 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 13/113 (11%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P+ + Y + + + +A + L+ R+ Sbjct: 124 PIFDADGEVEYFLGSQVEIAEDQGQANDARR-------------NGAAERVERLSRRQKE 170 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G +++IA +LGLS TV + + LD AI AI G+ Sbjct: 171 ILVLMAAGKLNKQIAYELGLSERTVKMHRSAVLKGLDVKTSADAIRVAIEAGF 223 >gi|91791280|ref|YP_552230.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91701161|gb|ABE47332.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 256 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 12/231 (5%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 ++ + + I + A++F T+ DF + D I + + Sbjct: 29 ATEADTNNLTREIVELLGAQSFVYTTL-LPPDFHGEDGDLRFFIGCKPDLCSIYHKRMWI 87 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---FHK 128 D F + + PII I + S +R+ +G+ P + Sbjct: 88 MNDPFFDYARTNSNPIIGSKI---RLQTSGQVEMMRVSAEHGFRSGLVVPTHTSMNASMR 144 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----FKKRSSAARNLTERETSCLQ 183 G + + E I+ + + L L ++++ +L + E LQ Sbjct: 145 MGLLYIGLDLPEEIGEPILWGQRVKFGALGMELLLWWSNRMRQQAMRKYSLIDDEVDMLQ 204 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G + EIA L L V L + KLD QA+ A G + Sbjct: 205 LSKKGMVATEIAALLDLKTTAVYRKLNTIKEKLDVDKLEQAVKLAESVGLL 255 >gi|90962775|ref|YP_536690.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90821969|gb|ABE00607.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 201 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L +++E+A+K LS T+ Y+ S K +R++A+ A + Sbjct: 140 PLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRN 199 Query: 233 YI 234 +I Sbjct: 200 WI 201 >gi|325529068|gb|EGD06069.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 277 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 12/224 (5%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 + H +I L+ +L + D Sbjct: 53 FAQCHERLRQIGFSTLGYGAYEMIGRRILCAHLLRDL--APATFMQPYIEGMLYESDPRF 110 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVI 133 P+ W+ + E + G V G L +G+ F + + Sbjct: 111 AQVRQSGFPVAWRLDEIEAAAQRDGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAV 170 Query: 134 FTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGD 187 S + + VI A V L + R + R +L + + L+ Sbjct: 171 NVSSEAHGTEWIDDRVIGGALSVSLAVHRVALPFLEARIARLRGFSLGDEQQQVLERLVH 230 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G + +EIA L S+H V ++ S + NR Q A R Sbjct: 231 GLSDQEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274 >gi|304397145|ref|ZP_07379024.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304355294|gb|EFM19662.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 219 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 QKTESPFSCLSERELQIMLMITRGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|296156364|ref|ZP_06839202.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295892963|gb|EFG72743.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 218 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ A ++E + L S LT R Sbjct: 97 VTQAVRAGASGYVLKDSPATEIIQAIGAVLEGKSFFSAGLGARLIQASATQSPVERLTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA++ LSV TV + + KLD + + I A+ Sbjct: 157 ERDILDALAEGLSSKQIAQRNELSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210 >gi|269838161|ref|YP_003320389.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269787424|gb|ACZ39567.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 983 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG T ++AE+L LS TV+ +L S KL +R A A+ Sbjct: 922 GLTPREVEVLRLVADGLTDAQVAERLFLSPRTVSQHLRSIYNKLGVSSRAAATRFALENR 981 Query: 233 Y 233 Sbjct: 982 L 982 >gi|284040679|ref|YP_003390609.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283819972|gb|ADB41810.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 219 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L +G ++ EI+EK+ LS TV + K N +A A + Sbjct: 159 LSEREKEVLMLICEGLSTLEISEKIFLSPRTVEGHRLRILEKTGTKNTAGMVAYAFKNSL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|192292208|ref|YP_001992813.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192285957|gb|ACF02338.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 12/147 (8%) Query: 96 TVIESSGQLSVRLEGGLLPFAGIAF-------PVRLGFHKNGYVIFTSEFLMLANEVIIE 148 + SG I F P+ + K G V F ++ ++ +++ Sbjct: 61 RLPGVSGLDFRDALAKAGLEIPIVFMTGHGDIPMSVRAMKAGAVDFLTK--PFRDQDMLD 118 Query: 149 AHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A E +LT R+ G +++IA +L +S TV Sbjct: 119 AVTRALAKDRARREGEGALADLRQRFESLTPRQRQLFTFVAAGLMNKQIAGELNVSEVTV 178 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFG 232 + G K+DA + KA G Sbjct: 179 KIHRGIMMKKMDARTVADLVRKAEALG 205 >gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A N T RE S LQL +G ++EIA +L S+ V Y+ +K +R + + A+ Sbjct: 168 ALHNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 227 Query: 230 RFGYI 234 + Sbjct: 228 ENQLV 232 >gi|15598800|ref|NP_252294.1| response regulator ErdR [Pseudomonas aeruginosa PAO1] gi|107103118|ref|ZP_01367036.1| hypothetical protein PaerPA_01004187 [Pseudomonas aeruginosa PACS2] gi|116051601|ref|YP_789560.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|152984066|ref|YP_001346921.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|218890171|ref|YP_002439035.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254242302|ref|ZP_04935624.1| hypothetical protein PA2G_03043 [Pseudomonas aeruginosa 2192] gi|296387892|ref|ZP_06877367.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313108962|ref|ZP_07794937.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9949760|gb|AAG06992.1|AE004780_11 response regulator ErdR [Pseudomonas aeruginosa PAO1] gi|115586822|gb|ABJ12837.1| putative DNA-binding response regulator, LuxR family [Pseudomonas aeruginosa UCBPP-PA14] gi|126195680|gb|EAZ59743.1| hypothetical protein PA2G_03043 [Pseudomonas aeruginosa 2192] gi|150959224|gb|ABR81249.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] gi|218770394|emb|CAW26159.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310881439|gb|EFQ40033.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 217 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ +LT ++ L + +G +++IA L +S TV A++ + KL+ R QA Sbjct: 147 SAGLASLTPQQFRVLTMVCEGLLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAALL 206 >gi|295698853|ref|YP_003606746.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438066|gb|ADG17235.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 220 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 52/188 (27%), Gaps = 27/188 (14%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 D+ D + + S + R+ + Sbjct: 38 ADAAQAYQRFCALRPDVVV--------------MDVSLPGASGIEAMRRMLAREPDARVL 83 Query: 119 AFPVR------LGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITD-----FLELFK 165 F V G + + ++ E + + D L Sbjct: 84 IFSVHEESIFVRRALDAGALGYVTKASAPDVLVEAVRSIARRAGYLSPDISQALALRTAF 143 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R L+ RE L+L GYT IAEKLGLS TV + K A N +Q Sbjct: 144 NEGPPGRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLA 203 Query: 226 AKAIRFGY 233 A R G Sbjct: 204 QMASRLGL 211 >gi|227497321|ref|ZP_03927553.1| possible response regulator [Actinomyces urogenitalis DSM 15434] gi|226833192|gb|EEH65575.1| possible response regulator [Actinomyces urogenitalis DSM 15434] Length = 240 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE ++L GYT +E A +L +SV TV ++ + KL NR + A Sbjct: 178 DRLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAAAR 237 Query: 232 GYI 234 + Sbjct: 238 RIV 240 >gi|118136465|gb|ABK62855.1| transcriptional regulator [Halomonas anticariensis] Length = 217 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L + + L+ RE + + T +I+++L LS TVN Y K Sbjct: 130 AQRVVLAKVDAQDNPFDTLSHRELQVAMMIVNCQTVSDISDRLFLSPKTVNTYRYRIFEK 189 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L + ++ +R G + Sbjct: 190 LGVHSDVELTHLGLRHGLV 208 >gi|119025065|ref|YP_908910.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764649|dbj|BAF38828.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 221 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 64/179 (35%), Gaps = 15/179 (8%) Query: 65 PNILIETYGDDFLFHFNSGL--LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA-FP 121 + T GD+ + L ++ + E + + +RL LP GI F Sbjct: 41 YVVWTATSGDEAIERCQRNDDNLNLLVLDMSMEGLQGPAICHRIRLMDRHLPILGITSFS 100 Query: 122 V---RLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAA 171 + R + G + IE G + + ++ +S Sbjct: 101 INSYRSRLMEAGAQGLIGKEDSDQLAKAIERLCGGNVMEGFEPPALANVRIRREEETSP- 159 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + L DG EIAE+L +S TV ++ KL+ QA+A +R Sbjct: 160 -RLTVREEQIISLCADGMLDREIAERLDISESTVRKHMQGILKKLNCKTARQAVALWVR 217 >gi|332306220|ref|YP_004434071.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173549|gb|AEE22803.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 218 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L+ G +++IA L +S T+ +++ S KL A NR++ + Sbjct: 153 LTRRELIVLKHLTKGEANKQIAYNLHISETTIKSHVSSILKKLGATNRVKVVV 205 >gi|299532904|ref|ZP_07046291.1| ATP-dependent transcription regulator LuxR [Comamonas testosteroni S44] gi|298719128|gb|EFI60098.1| ATP-dependent transcription regulator LuxR [Comamonas testosteroni S44] Length = 857 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 37/60 (61%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE LQ G ++EIA++L L+ +TV YL +KLDA NR QAIA+A R + Sbjct: 797 SQRERELLQALALGGRNQEIAQRLQLTENTVKWYLKRLYMKLDAHNRTQAIAQARRLHLL 856 >gi|295836763|ref|ZP_06823696.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces sp. SPB74] gi|295826194|gb|EFG64729.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces sp. SPB74] Length = 215 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 50/192 (26%), Gaps = 31/192 (16%) Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLG 125 L+ + + LL ++ + L+ + PV G Sbjct: 10 RLVVADDNPVVRAGLRALLEGRADALVVAEAADGRQALAATERHRPDGVLLDLRMPVVDG 69 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------------------VITDFLELFKK 166 + + L++ E H + + Sbjct: 70 LTVLPRLARLAPVLVVTYGRDAELHARVRRMGAAGCLVHGDFTVPQLVGAVRHLRAGAPS 129 Query: 167 RSSAAR-----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + L+ RE + L G + +IA ++ TV ++ K Sbjct: 130 LPPPSHTRSAVRPSWGGPLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAK 189 Query: 216 LDAVNRIQAIAK 227 L R +AIA+ Sbjct: 190 LQTTTRSEAIAR 201 >gi|262403910|ref|ZP_06080467.1| transcriptional regulator LuxR family [Vibrio sp. RC586] gi|262349872|gb|EEY99008.1| transcriptional regulator LuxR family [Vibrio sp. RC586] Length = 265 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 45/195 (23%), Gaps = 25/195 (12%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 L D F ++ + + Sbjct: 58 LSTQRELLFQRYLTHAYLD-DPFYSALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTG 116 Query: 114 PFAGIAFPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGAC--------YQVITDFLELF 164 ++ V L ++ V + E I L L Sbjct: 117 WQDEVSLVVNLDGERSIVVYLGCFKPRSFPREQITALQQRFTVLQALCQQHWQQQPLRLA 176 Query: 165 KKRSSA---------------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + + A+ L+ RE L G S+EIAE L +S TV + Sbjct: 177 ESAQPSQELRTWVEQAIQSFGAQRLSPREQEITALLIQGLDSQEIAEALAISHGTVKNHR 236 Query: 210 GSATVKLDAVNRIQA 224 +L + + Sbjct: 237 KRIYAQLHVSSLSEL 251 >gi|255532626|ref|YP_003092998.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345610|gb|ACU04936.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 224 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A + + RE L+L +G T++E+A++L +S TV + S T K N I Sbjct: 157 AETAIDFSSREIEILELIAEGLTNQEMADRLFISKRTVEGHRQSLTDKTGCRNTAALIRY 216 Query: 228 AI 229 A+ Sbjct: 217 AM 218 >gi|254513081|ref|ZP_05125147.1| two-component regulator [Rhodobacteraceae bacterium KLH11] gi|221533080|gb|EEE36075.1| two-component regulator [Rhodobacteraceae bacterium KLH11] Length = 225 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 PV + +I ++ + A G + + + LT RE Sbjct: 100 VPVDTPLDELCGLIRAAQRGEMKLAPKAVA-GLFRALHERLSDQAVIVPAEPEILTRRER 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +G T++EIA +L SV TV ++ + KL+ R Sbjct: 159 EVCTLVCEGLTNKEIARELNRSVGTVKNHIHAILGKLEVPRR 200 >gi|218675482|ref|ZP_03525151.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 213 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 53/175 (30%), Gaps = 10/175 (5%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 D D PI + S + R + + Sbjct: 36 DLAGRAVESASLRADLAAIAARFPDAPIT-------LLSGSDDAIIARQALKMGIRGFFS 88 Query: 120 --FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTE 176 PV + V+ F +I A+ L + A T Sbjct: 89 TSLPVDIALAGLRLVLAGGTFFPQLLGAVIGANEHSPARNAAEKSLDDRTQYFAIAGFTP 148 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L G +++ IA KL LS HTV +L KL A NR + +A+ I+ Sbjct: 149 REAEILAELQSGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVARLIQR 203 >gi|223934739|ref|ZP_03626659.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896694|gb|EEF63135.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 216 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +S LT E L GY +EIAE++ +S+ TV +Y+ + KL +R +A+ Sbjct: 151 GDTSPVARLTPGEKEFLDQLAAGYAYKEIAERMRISIDTVRSYVRTVYEKLHVHSRTEAV 210 Query: 226 AK 227 K Sbjct: 211 VK 212 >gi|157059879|dbj|BAF79686.1| putative LuxR family two-component system response regulator [Streptomyces kasugaensis] Length = 217 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 35/84 (41%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H ++ LT+RE L L G+G ++ + +++ +S TV Y+ Sbjct: 132 HVVDSLASGRSAHRAEQARRRLETLTDRELEVLALLGEGLSNADAGQRIHMSEATVKTYV 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL+ NR+QA A G Sbjct: 192 SRILAKLECENRVQAALLARDAGL 215 >gi|109898189|ref|YP_661444.1| two component LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700470|gb|ABG40390.1| two component transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 218 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L+ G +++IA L +S T+ +++ S KL A NR++ + Sbjct: 153 LTRRELIVLKHLTKGEANKQIAYNLHISETTIKSHVSSILKKLGATNRVKVVV 205 >gi|254387192|ref|ZP_05002459.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1] gi|194346004|gb|EDX26970.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1] Length = 90 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 28/74 (37%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + L K + LT RE L +G T+ IA +L LS TV+ +L K Sbjct: 15 SWIYSLTKPNTQRVPGLTPREHEIAALVAEGLTTPAIAARLYLSPRTVDTHLSHIFRKTG 74 Query: 218 AVNRIQAIAKAIRF 231 R A R Sbjct: 75 VTTRSALAALTARH 88 >gi|188496895|dbj|BAG32345.1| putative response regulator [Streptomyces kasugaensis] Length = 217 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 35/84 (41%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H ++ LT+RE L L G+G ++ + +++ +S TV Y+ Sbjct: 132 HVVDSLASGRSAHRAEQARRRLETLTDRELEVLALLGEGLSNADAGQRIHMSEATVKTYV 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL+ NR+QA A G Sbjct: 192 SRILAKLECENRVQAALLARDAGL 215 >gi|149192213|ref|ZP_01870429.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148833944|gb|EDL50965.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 211 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT ++ L + DG +++IA L +S T+ A+ + KL N QA+ Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYDLNVSEDTIKAHRTAIFRKLGVKNSTQAVI 202 >gi|24375643|ref|NP_719686.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350554|gb|AAN57130.1|AE015848_8 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 202 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + F+++S + LT+RE L G T+++I+E + LS+ T+ Sbjct: 111 ALVQAIKKAHKESQASFEQQSLQHKFAQLTDREQQVLAHVVQGMTNKQISEAMYLSLRTI 170 Query: 206 NAYLGSATVKLDAVNRIQAI 225 + KL+ N + + Sbjct: 171 EVHRAKIMKKLEVSNMAELV 190 >gi|32472470|ref|NP_865464.1| transcriptional regulatory protein fixJ [Rhodopirellula baltica SH 1] gi|32443706|emb|CAD73148.1| probable transcriptional regulatory protein fixJ [Rhodopirellula baltica SH 1] Length = 474 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFLELFKKRSSAARNL 174 + +++ T L ++ I + + +L + + L Sbjct: 352 VRLTHKDGHLVWLLLTCSSLFNDSDQFIGIQVRAVDITHRKHVETLTKLAAEAKEKLKRL 411 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T RE L+ +G ++ IA +L +S TV + + KLDA + + + Sbjct: 412 TIRERQVLEQIVEGRMNKVIANRLEISEKTVERHRSNLMKKLDAQSVAELVKL 464 >gi|134292079|ref|YP_001115815.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135236|gb|ABO56350.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 213 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+R+ L+ +G ++ IA++L LS TV A++ + L+ +NR QA A A + Sbjct: 150 AGPLTQRQIEVLRYVAEGVPNKVIADRLNLSEKTVKAHVTAIFKALNVLNRTQAAAAARK 209 Query: 231 FGYI 234 G + Sbjct: 210 AGLL 213 >gi|325289007|ref|YP_004265188.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324964408|gb|ADY55187.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 216 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-----NLTER 177 +G++ T+ L + G ++ + ++ + E+ Sbjct: 94 AQASGFISKTASREQLVTAIRCALRGETVIPVSLLRQLRRQDLQIKASGNNEKGVSFDEK 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E S L+ G +++EIA+ L +S V L KL+ +R +AI +A R G I Sbjct: 154 ELSILKEVARGKSNKEIADYLLISQRVVEYNLTRIFGKLNVRSRSEAIFEARRLGVI 210 >gi|260429733|ref|ZP_05783709.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260419216|gb|EEX12470.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 241 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT ++ ++L G +++IA +L L+ TV A++ + +L NR QA Sbjct: 160 PKLAELTPQQKRIMKLICAGKPNKQIAYELSLAEATVKAHITALLRRLGVQNRTQAAVL 218 >gi|217968913|ref|YP_002354147.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gi|217506240|gb|ACK53251.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 211 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L++RE G + +IA L LSV T++ Y KL + + A Sbjct: 144 APHEKLSDRELQVFLRLARGESVSDIAAVLNLSVKTISTYRTRLLEKLGVASNAELATYA 203 Query: 229 IRFGYI 234 +R G I Sbjct: 204 LRHGLI 209 >gi|153216266|ref|ZP_01950359.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|124114355|gb|EAY33175.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] Length = 267 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 49/230 (21%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 27 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 84 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAAR---------------NL 174 E I L L + + L Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRNWVEQAIQSFGVQRL 203 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIA+ L +S TV + +L + + Sbjct: 204 SPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYSQLHVSSLSEL 253 >gi|116694520|ref|YP_728731.1| response regulator [Ralstonia eutropha H16] gi|113529019|emb|CAJ95366.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 219 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 NGY++ + + L ++ G + V LT RE L L Sbjct: 101 DAGANGYLVKSGDISELVPALMALREGRNF-VAARATAPATAAPDGIATLTRRELQILML 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G T+ +IA +L +S T + + KLD N + +A A R G Sbjct: 160 IARGATAGDIAAQLDISPLTARKHRENLMRKLDLHNTAEVVAYAARQGI 208 >gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein [polymorphum gilvum SL003B-26A1] gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein [Polymorphum gilvum SL003B-26A1] Length = 305 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G + +I + LGLS TVN +L KL NR A +A + Sbjct: 243 GLTAREAEVLLWIAKGKANRDIGDILGLSPRTVNKHLEQIYAKLGVENRASAAVRAAQ 300 >gi|284989855|ref|YP_003408409.1| LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063100|gb|ADB74038.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 910 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 1/137 (0%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 ++ + +G + G+ ++ T+ A + Sbjct: 767 EAFDQARAQLAGLPMPYERARVDFAHGVTLRRVGRRRDAAALLTTARQSFAALGAQVYVE 826 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C + + + NLTE+E + L G T++E+A + LSV TV +L Sbjct: 827 -RCDRELKTGRPAPRAAEPGTENLTEQERTVATLVATGLTNKEVAASMLLSVKTVQFHLT 885 Query: 211 SATVKLDAVNRIQAIAK 227 KL +R + A+ Sbjct: 886 RIYAKLGVRSRSELAAR 902 >gi|167614994|ref|ZP_02383629.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257141572|ref|ZP_05589834.1| LuxR family DNA-binding response regulator [Burkholderia thailandensis E264] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 12/123 (9%) Query: 116 AGIAFPVR--LGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELF-- 164 G P+ G + + + + ++E ++ Sbjct: 74 RGATLPIIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRAMKLAMQRHAADCR 133 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ LT RE L+ DG S++IA L +SV TV+ + S KL A + Sbjct: 134 RRELRRRIDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAA 193 Query: 224 AIA 226 + Sbjct: 194 LVR 196 >gi|126665850|ref|ZP_01736831.1| adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein [Marinobacter sp. ELB17] gi|126629784|gb|EBA00401.1| adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein [Marinobacter sp. ELB17] Length = 307 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L G ++ EIA+ L ++ TV ++ + KLD +R Q I +A G Sbjct: 244 ELTPRQRMILDRVARGQSNIEIAQALSIASKTVRNHVSAICSKLDISSRAQLIVQAREKG 303 Query: 233 Y 233 + Sbjct: 304 F 304 >gi|89899936|ref|YP_522407.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344673|gb|ABD68876.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 201 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 11/156 (7%) Query: 88 IWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG--FHKNGYVIFTSEFLMLA 142 W+ + S +L L I + ++ +F+ Sbjct: 46 DWRGCVVVDIRMPGMSGLELQRCLRERGPSLPVIVITAHGDVAAARQAFLADAVDFIEKP 105 Query: 143 NE--VIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++ A + + L+ RE + L G + IAE Sbjct: 106 FDGKQLLGAIENALSGFRALDTAQARAAFTKPTLGQLSIREREVMTLMVKGLHNRRIAET 165 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LG+S TV + KL A N + + + G Sbjct: 166 LGISPRTVEVHKARVMEKLGAQNIVDLVRL-VDKGL 200 >gi|300722891|ref|YP_003712186.1| response regulator (activator) in two-component regulatory system wtih UhpB [Xenorhabdus nematophila ATCC 19061] gi|297629403|emb|CBJ90004.1| response regulator (activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) [Xenorhabdus nematophila ATCC 19061] Length = 205 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 11/123 (8%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGA----CYQV---ITDFLELF 164 I V + + + +++A + I L Sbjct: 74 TCIMLSVHDSATMVENALKAGARGYLSKRCSPDELLQAVRTTANNGCYLTPDIVHKLTSS 133 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A +LT+RE ++ G + +A +LGLS TV+ + +A KL VN + Sbjct: 134 KNNPTALDHLTKRERQVGEMLARGMDVKAVAAELGLSHKTVHVHRANAMSKLGVVNNVGL 193 Query: 225 IAK 227 Sbjct: 194 ANY 196 >gi|291615036|ref|YP_003525193.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291585148|gb|ADE12806.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 228 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 162 ELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L KRS A LT R+ L G ++EI++++ L+ TV + + L A Sbjct: 144 SLSSKRSQRAAKFGLTSRQLEVLTYLASGLANKEISKRMNLAEGTVKIHTAAVYQALHAN 203 Query: 220 NRIQAIAKAIRFGYI 234 +R++A++ A R G++ Sbjct: 204 SRLEAVSAARRLGFL 218 >gi|221200551|ref|ZP_03573593.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221206231|ref|ZP_03579245.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221174243|gb|EEE06676.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221179892|gb|EEE12297.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 277 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 12/220 (5%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 H +I L+ +L D Sbjct: 57 HARLRQIGFSTLGYGAYEMIGRRILCAHLLRDL--APPSFMQPYIEGALYESDPRFAQVR 114 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVIFTSE 137 P+ W+ + E + G V G L +G+ F + + + Sbjct: 115 QSGFPVAWRLDEIEAAAQRGGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAVNLTS 174 Query: 138 FLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191 + + VI A V L + R + R L + + L+ G + Sbjct: 175 ETHGTDWIDDRVIGGALAVSLAVHRVALPFLEARVARMRGFALGDEQQQVLERLVHGLSD 234 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +EIA L S+H V ++ S + NR Q A R Sbjct: 235 QEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274 >gi|254478643|ref|ZP_05092015.1| transcriptional regulator, LuxR family protein [Carboxydibrachium pacificum DSM 12653] gi|214035419|gb|EEB76121.1| transcriptional regulator, LuxR family protein [Carboxydibrachium pacificum DSM 12653] Length = 204 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 116 AGIAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAAR 172 IA P+ +G + GYV ++ + +EV++ ++ T++ ++ K+ + Sbjct: 80 HCIASPIIVGNGEIAGYVDISTIDKKIVDEVLMVIKLLAEKIATEYEKIVKEKELNKIKI 139 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L + +T L L GY +IAE LG+ V TV + KL N +A+AKAI+ G Sbjct: 140 KLNDSQTKILALEAKGYRESDIAEALGIGVVTVKYHKRKIVEKLGVKNIKEAVAKAIKLG 199 Query: 233 YI 234 I Sbjct: 200 LI 201 >gi|94970756|ref|YP_592804.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552806|gb|ABF42730.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 209 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 1/115 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERE 178 P+ + K+G + F ++ + + + V +E + + LT RE Sbjct: 90 IPMTVRAMKSGALEFLTKPFEPEHLLSVVEQALACDVARLAVEAEEAALRARYEMLTRRE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + L G+ +++IA +LG S T+ + G +K+ A + + + A R Sbjct: 150 REVMGLVVSGFLNKQIASELGTSEITIKVHRGRVMLKMQAGSLAELVRMAERLHL 204 >gi|329936870|ref|ZP_08286549.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329303795|gb|EGG47679.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 244 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERE 178 +R G T+ L+ A E ++ + R++ A L+ RE Sbjct: 111 LRAGATGVLAADITAVQLLAALETVLRGGLVVVLGAAPAPAVPGPRTAGAGVVGTLSLRE 170 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G + IA L +S TV ++ KL R AIA A G + Sbjct: 171 RQVLTLLASGRGTPAIATALRISPLTVKTHIAHLLSKLGVSRRGHAIAFAYEHGLV 226 >gi|307328810|ref|ZP_07607980.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885475|gb|EFN16491.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + S LT RE G+++ +IA L +S TV +L KLDA NR Sbjct: 142 AVAPQARSRMAELTAREREVAVAVAQGHSNSQIATDLFVSQSTVKVHLSRIMTKLDAANR 201 Query: 222 IQAIAKAIRFGY 233 Q G Sbjct: 202 TQVALITHDAGL 213 >gi|300113092|ref|YP_003759667.1| LuxR family two component transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539029|gb|ADJ27346.1| two component transcriptional regulator, LuxR family [Nitrosococcus watsonii C-113] Length = 225 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ + LT RE + L G ++ IA L +S+ TV + G KL + Sbjct: 152 REEITIRMMRLTPREREVMALVLKGRPNKLIASDLDISIKTVEIHRGQVMRKLQVRTQAD 211 Query: 224 AIAKA 228 I A Sbjct: 212 LIHLA 216 >gi|299066606|emb|CBJ37796.1| two component transcriptional regulatory protein [Ralstonia solanacearum CMR15] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176 P+ + K G V F + E +++ +A LT Sbjct: 97 VPMAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARTEDSAAREQKAANDLLSRLTT 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209 >gi|293394905|ref|ZP_06639195.1| response regulator protein [Serratia odorifera DSM 4582] gi|291422656|gb|EFE95895.1| response regulator protein [Serratia odorifera DSM 4582] Length = 210 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 31/53 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NLT R+ L + G+ +++IA +L +S TV ++ + K+ +R++AI Sbjct: 147 NLTSRQLEVLTMMMRGFPNKKIALQLAISEPTVKEHISNILKKIGVNSRVEAI 199 >gi|289669289|ref|ZP_06490364.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 200 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 137 ADPLSERERTILRLAGEGRSTSEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|269102895|ref|ZP_06155592.1| transcriptional regulatory protein UhpA [Photobacterium damselae subsp. damselae CIP 102761] gi|268162793|gb|EEZ41289.1| transcriptional regulatory protein UhpA [Photobacterium damselae subsp. damselae CIP 102761] Length = 202 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + A+ +LT+RE L G + +A +LGLS TV+ + +A KL N ++ Sbjct: 134 EDDEQASVHLTKREREIGLLLAKGLDVKTVAAELGLSHKTVHVHRANAMEKLGVKNNVEL 193 Query: 225 IAK 227 Sbjct: 194 AQY 196 >gi|260779032|ref|ZP_05887924.1| BarA-associated response regulator UvrY [Vibrio coralliilyticus ATCC BAA-450] gi|260605196|gb|EEX31491.1| BarA-associated response regulator UvrY [Vibrio coralliilyticus ATCC BAA-450] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 ISGDVELTHLAIRHGML 209 >gi|254713235|ref|ZP_05175046.1| Monoamine regulon transcriptional regulator [Brucella ceti M644/93/1] gi|254716411|ref|ZP_05178222.1| Monoamine regulon transcriptional regulator [Brucella ceti M13/05/1] Length = 245 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229 >gi|227489471|ref|ZP_03919787.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227090649|gb|EEI25961.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 280 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + EV E C Q+I R L+ RE L G+T+ E A++ Sbjct: 189 NRITDEEVRNELEVLCDQMIAPV------RIKPTTKLSARELDVLSCVALGHTNVEAAKE 242 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 243 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 277 >gi|289808445|ref|ZP_06539074.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 107 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L GY++E+IA +L ++ T+ ++ + KL +R A+ A + Sbjct: 41 PLTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 99 >gi|221633727|ref|YP_002522953.1| putative two-component system response regulator [Thermomicrobium roseum DSM 5159] gi|221157126|gb|ACM06253.1| putative two-component system response regulator [Thermomicrobium roseum DSM 5159] Length = 246 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET LQL G +++EIA+ L L+ TV L KL +R QA A+ G Sbjct: 171 RLTRRETQLLQLVASGLSNKEIADVLSLAESTVKNRLSLLFDKLGVKDRTQAAIFALANG 230 Query: 233 YI 234 + Sbjct: 231 VL 232 >gi|73537502|ref|YP_297869.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72120839|gb|AAZ63025.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 215 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 12/143 (8%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVI----- 157 L RL + + V + + + + E AC+ V+ Sbjct: 73 LLNRLARRHRGTRIVVVSAQSNAAIIRRAVKLGARAFVSKEDELEETLRACFHVMTSESC 132 Query: 158 ------TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 L+ + A +LT RE ++L G EIA KLG SV T+++ Sbjct: 133 YYSPSIRAILDDAAMVDAPATDLTLRELEVVRLYAQGMQLNEIAAKLGRSVSTISSQKTV 192 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 A KL I A G I Sbjct: 193 AMRKLGVNTNTDLIRYAYENGLI 215 >gi|158318162|ref|YP_001510670.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113567|gb|ABW15764.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 238 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 36/85 (42%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A G + L+ERE L+ G ++ EIA +L +S TV A+ Sbjct: 135 ASGRLLGALRTGAVADLAVRRRFERLSERELQVLRAMARGASNREIAIELRVSERTVKAH 194 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 +GS KL+ +R AI A G Sbjct: 195 VGSIFGKLEVRDRAGAIVLAHDVGL 219 >gi|238765471|ref|ZP_04626390.1| two-component response regulator [Yersinia kristensenii ATCC 33638] gi|238696295|gb|EEP89093.1| two-component response regulator [Yersinia kristensenii ATCC 33638] Length = 176 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAE 196 + +V+IE L ++K+++S + L+ RE L G TS++IA Sbjct: 80 PIDADVLIETISMALDQHEQALVVYKRQASYQQLFNQLSAREREVATLIIQGETSKQIAH 139 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L +S TV A+ + KL+ + I Sbjct: 140 ILSISPRTVEAHRANIFAKLEVNSLASLIH 169 >gi|209520725|ref|ZP_03269474.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|295676955|ref|YP_003605479.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] gi|209498850|gb|EDZ98956.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|295436798|gb|ADG15968.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 214 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177 P+ + K G + F E E+ + ++ + ++R++A R LT R Sbjct: 96 VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESTSVQQQRAAAERLGKLTAR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206 >gi|134098243|ref|YP_001103904.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004336|ref|ZP_06562309.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910866|emb|CAM00979.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 218 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 8/91 (8%) Query: 151 GACYQVITDFLELFKKRSSA--------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 V L F R+S LT RE L L G G ++ IA+ LG + Sbjct: 124 MLSPSVTRRLLSHFADRNSPRGPTAVRGLDELTPRERQILSLVGGGLSNASIAKTLGATE 183 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TV ++ +KLD NR+Q A G Sbjct: 184 STVKGHVSRLLMKLDCENRVQLALIAHNAGI 214 >gi|111020427|ref|YP_703399.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819957|gb|ABG95241.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 763 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 165 KKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++R+ A LT+RE L G ++ +IAE L +S TV+ ++ KL +R Sbjct: 685 ERRAPRAEASPLTKREQEIADLLAQGLSNRQIAEALVISRRTVDGHVEHIFDKLAVSSRT 744 Query: 223 QAIAK 227 Q A Sbjct: 745 QVAAW 749 >gi|313201168|ref|YP_004039826.1| LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|312440484|gb|ADQ84590.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 348 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 30/89 (33%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + Q L R S L+ RE ++ +EIA + GLS T Sbjct: 236 QLPIGIYLNQQQAGGLTRLDIGRPSPLDKLSRREREVALGFAQAHSYKEIAAETGLSPAT 295 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 V YL KL ++ + + R Sbjct: 296 VRHYLRGIYAKLAINDKAELVRLVTRHEL 324 >gi|260756053|ref|ZP_05868401.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759277|ref|ZP_05871625.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760999|ref|ZP_05873342.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|261316853|ref|ZP_05956050.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261751522|ref|ZP_05995231.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|265987924|ref|ZP_06100481.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992398|ref|ZP_06104955.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994141|ref|ZP_06106698.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|260669595|gb|EEX56535.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671431|gb|EEX58252.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676161|gb|EEX62982.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|261296076|gb|EEX99572.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261741275|gb|EEY29201.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262765122|gb|EEZ11043.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003464|gb|EEZ15757.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|264660121|gb|EEZ30382.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 254 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 186 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238 >gi|258653176|ref|YP_003202332.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556401|gb|ACV79343.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 204 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 4/116 (3%) Query: 123 RLGFHKNGYVIFTSEFL--MLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERE 178 R G+ + + F+ E +++A +Q + + + LT RE Sbjct: 89 RPGYLRRAMEAHAAGFMVKDAPPETLLDAIRRVHQGLRVVDPDLAAESLALGESPLTGRE 148 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG T +IA +L LS TV +L S K A R A+ A G+I Sbjct: 149 RDVLLATADGGTVSQIAGRLFLSEGTVRNHLSSVIGKTGAATRADALRIATDRGWI 204 >gi|284990174|ref|YP_003408728.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063419|gb|ADB74357.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 201 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 8/169 (4%) Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 GD+ L + E + + L L + Sbjct: 35 RGDEVLAAAREHTP--DVALLDIEMPGQDGIDAARELAAELPGVRAVVLTTFGRPGFLRR 92 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLA 185 + L + + + + + + +A A L+ RE L+ A Sbjct: 93 AMEVGAAGFLVKDAPVAELAKAIRAVVAGERVIDRDLAAAALAIGATPLSTREADVLREA 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA +L LS TV YL SA K A R++A A G++ Sbjct: 153 ADGATVADIARRLFLSEGTVRNYLSSAIGKTGARTRVEAARVAADKGWL 201 >gi|327483910|gb|AEA78317.1| BarA-associated response regulator UvrY [Vibrio cholerae LMA3894-4] Length = 188 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 107 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 166 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR+G + Sbjct: 167 INGDVELTHLAIRYGIL 183 >gi|312796728|ref|YP_004029650.1| transcriptional regulatory protein fixJ [Burkholderia rhizoxinica HKI 454] gi|312168503|emb|CBW75506.1| Transcriptional regulatory protein fixJ [Burkholderia rhizoxinica HKI 454] Length = 207 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177 P+ + K G + F E E+ + T+ ++R++A R LT R Sbjct: 93 VPMAVSTMKKGAMDFI-EKPFDEAELRQLVERMLERARTESSTAQQQRAAAERLSKLTAR 151 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 152 EQQVLGRIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 203 >gi|298245547|ref|ZP_06969353.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553028|gb|EFH86893.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 46/110 (41%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 ++G V F + + I + + D S LT RE L Sbjct: 92 RAMESGVVGFLLKDAPASELAIALRRVMAGERVVDPDLALAALSEGMNPLTPREREVLAA 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L LS TV +L +A KL+A NR++A A + G++ Sbjct: 152 TLPGISHAEIATRLALSEGTVRNHLSAAMQKLEARNRMEAARLAEQKGWL 201 >gi|229589824|ref|YP_002871943.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361690|emb|CAY48571.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 219 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NLTERE L L G ++++I +LG+S TV Y+ S KL +R++ A Sbjct: 152 NLTEREGQTLALIAAGMSNKQIGRELGISDGTVKIYVRSLLQKLGLHSRLELAAW 206 >gi|297189985|ref|ZP_06907383.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718642|gb|EDY62550.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 380 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +F+ + SA L+ RE ++L G T+ IA +L ++ T A++ KL+A Sbjct: 304 EFVRVAPPTPSALALLSRREIEVMELLAGGATNRVIAARLVVAESTAKAHVAQILRKLEA 363 Query: 219 VNRIQAIAKAIRF 231 NR +A+ K +R Sbjct: 364 RNRAEAVTKYLRL 376 >gi|320201466|gb|EFW76046.1| transcriptional regulator FimZ [Escherichia coli EC4100B] Length = 210 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+ G +++EI++KL LS TV+A+ + KL + ++ I A + Sbjct: 150 LSNREVTILRYLVSGLSNKEISDKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|299147852|ref|ZP_07040915.1| transcriptional regulator [Bacteroides sp. 3_1_23] gi|298514035|gb|EFI37921.1| transcriptional regulator [Bacteroides sp. 3_1_23] Length = 259 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A A Sbjct: 197 LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256 Query: 234 I 234 + Sbjct: 257 L 257 >gi|237714874|ref|ZP_04545355.1| transcriptional regulator [Bacteroides sp. D1] gi|262406858|ref|ZP_06083407.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294647174|ref|ZP_06724773.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294809214|ref|ZP_06767930.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|298483630|ref|ZP_07001805.1| transcriptional regulator [Bacteroides sp. D22] gi|229445199|gb|EEO50990.1| transcriptional regulator [Bacteroides sp. D1] gi|262355561|gb|EEZ04652.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292637461|gb|EFF55880.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294443608|gb|EFG12359.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|295084732|emb|CBK66255.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacteroides xylanisolvens XB1A] gi|298270200|gb|EFI11786.1| transcriptional regulator [Bacteroides sp. D22] Length = 259 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A A Sbjct: 197 LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256 Query: 234 I 234 + Sbjct: 257 L 257 >gi|114763261|ref|ZP_01442685.1| putative transcriptional regulator protein [Pelagibaca bermudensis HTCC2601] gi|114544059|gb|EAU47069.1| putative transcriptional regulator protein [Roseovarius sp. HTCC2601] Length = 241 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT ++ ++L G +++IA +L L+ TV A++ + +L NR QA Sbjct: 156 EALHPKLAELTPQQQRIMKLICAGKPNKQIAYELSLAEATVKAHITALLRRLGVQNRTQA 215 Query: 225 IAK 227 Sbjct: 216 AVL 218 >gi|330888767|gb|EGH21428.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str. 301020] Length = 74 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +E+ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N Sbjct: 1 MEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCN 60 Query: 221 RIQAIAKAIRFG 232 + A +A G Sbjct: 61 KTAAAVQAALSG 72 >gi|325919524|ref|ZP_08181543.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325923815|ref|ZP_08185429.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325545709|gb|EGD16949.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325550000|gb|EGD20835.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 200 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV +L KL NRI+A A + Sbjct: 137 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNHLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|319787310|ref|YP_004146785.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317465822|gb|ADV27554.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 217 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 4/111 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY+ + L V A+G L ++ S L+ RE Sbjct: 100 GASGYIGKAGDARELLRAVRDVANGKRYLGSSVAQNMALAGVERGGSPFDVLSPRELEVA 159 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G E IA +L LS TVN + K+ + I A R+G Sbjct: 160 MLLVQGLRQEMIARRLKLSAKTVNTHKSRLFEKIGVQDSIALARLAARYGL 210 >gi|319785858|ref|YP_004145333.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317464370|gb|ADV26102.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 221 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 37/70 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + R LT ++ LQ+ G+G +++IA LG+S T+ A++ + KL NR Sbjct: 137 RDEHEVAQRLRELTPQQFRVLQMLGEGRLNKQIAYDLGVSEATIKAHVTAVLRKLGVGNR 196 Query: 222 IQAIAKAIRF 231 QA+ A R Sbjct: 197 TQAVLMAGRL 206 >gi|310640465|ref|YP_003945223.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309245415|gb|ADO54982.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 589 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GYV+ T + LAN + + H +V + LTERE L Sbjct: 477 GAEGYVLKTIDPRELANTIRLVHHGGTMITQEVAGTLFQQMTGTMKNPYGLTERELEILH 536 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +G+ + IA K+ LS TV Y+ + K+ +R +AI KA Sbjct: 537 CLTEGHRYKAIASKVHLSEGTVRNYISTIYSKMQVQSRDEAIEKA 581 >gi|300788717|ref|YP_003769008.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798231|gb|ADJ48606.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L LA G T +IA +L LS TV YL + KL+A NR+ AI A Sbjct: 140 PLTPREIEILSLAARGRTVSDIASELFLSAGTVRNYLAAVVTKLNARNRVHAIRIATEAE 199 Query: 233 YI 234 ++ Sbjct: 200 WL 201 >gi|240140122|ref|YP_002964599.1| putative response regulator; input and output domains: CheY and LuxR family [Methylobacterium extorquens AM1] gi|240010096|gb|ACS41322.1| putative response regulator; input and output domains: CheY and LuxR family [Methylobacterium extorquens AM1] Length = 300 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 + + + F I + L ++ +T RE Sbjct: 194 LTLTDAQGRIHTLSFIGRTGPE-----ILLRLSGDPAAAGLERLRERL-----PITGREA 243 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G +S +I E LGLS TV +L KL NR A A A R Sbjct: 244 EVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295 >gi|12642200|gb|AAK00179.1|AF222754_7 probable nodulation protein [Bradyrhizobium sp. WM9] Length = 227 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ S L+ RE L+L G ++++A +LGL+ TV Y G K+ A + Sbjct: 150 RRLQSLFEALSPREQDVLKLVAAGLLNKQVAAELGLAEITVKIYRGHMMKKMGARSLADL 209 Query: 225 IAKAIRFGY 233 I A R G Sbjct: 210 IRMAERLGI 218 >gi|267027596|gb|ACY78510.1| LuxR type regulator [Corynebacterium stationis] Length = 279 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + E C Q+++ R + L+ RE L G+T+ E AE+ Sbjct: 188 NRVEDESLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 241 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 242 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276 >gi|237718307|ref|ZP_04548788.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|229452491|gb|EEO58282.1| transcriptional regulator [Bacteroides sp. 2_2_4] Length = 259 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A A Sbjct: 197 LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256 Query: 234 I 234 + Sbjct: 257 L 257 >gi|229519850|ref|ZP_04409284.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80] gi|229343138|gb|EEO08122.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80] Length = 265 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 52/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 25 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L ++ V + Sbjct: 82 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERSIVVYLGCFK 141 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 142 PRSFPREQIAALQQRFTVLQALCQQHWQKQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 201 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIA+ L +S TV + +L + + Sbjct: 202 SPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYAQLHVSSLSEL 251 >gi|253699116|ref|YP_003020305.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251773966|gb|ACT16547.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 216 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 34/74 (45%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + + NL+ RE LQL DG ++EIA G+SV TV S KLD Sbjct: 139 LQRIPDEVPATYENLSLREREILQLIADGKNAKEIAFSFGVSVKTVENQRHSIMKKLDLF 198 Query: 220 NRIQAIAKAIRFGY 233 + + A+R G Sbjct: 199 SIAELTKYAVRQGL 212 >gi|241666751|ref|YP_002984835.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862208|gb|ACS59873.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 222 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 VI E A + + L LT RE ++ +G ++++A KL +S Sbjct: 123 DPAVIAEEVNASIRAFNEANRLEAYFL----TLTPRERQVMKFVVEGLLNKQVAFKLNIS 178 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TV A+ G K++A + A R G Sbjct: 179 EITVKAHRGRLMRKMNARTLPDLLYMAARLG 209 >gi|160898545|ref|YP_001564127.1| LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364129|gb|ABX35742.1| transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 163 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L+ G ++IA LG+S HTV + + +L N ++ + A R Sbjct: 27 ASALTAREIDVLEAMAKGLGCKDIAHTLGISEHTVRKHRSNMCTRLGLRNAVELVTHARR 86 Query: 231 FGYI 234 G++ Sbjct: 87 QGWL 90 Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 25/56 (44%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L G+TS+EIA L LS TV + + KL + Q A Sbjct: 98 PLSPREQEVLAHVLAGHTSKEIARSLYLSDLTVRKHRENILRKLGLTSTAQLQTFA 153 >gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] Length = 295 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 30/58 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +T+RE+ L G TS EI+ L +S TVN +L KL NR A A +IR Sbjct: 234 PITKRESEVLYWVSYGKTSWEISLILEMSPRTVNKHLEQIYKKLGVDNRTSAAAISIR 291 >gi|56695084|ref|YP_165431.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56676821|gb|AAV93487.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 204 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 4/112 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT----ERETSC 181 G F + L + + +V L + + LT RE Sbjct: 92 AVDAGAAGFVPKTLAAKSLLHAVRFMIAGEVFVPSTVLQAPEAPSDGGLTATLSRREKQV 151 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++EIA +L L T+ ++ + KL+A NR QA A G+ Sbjct: 152 LGGLCRGLPNKEIARELDLQEVTIKLHVRTLCKKLNAKNRTQAAMIARDAGF 203 >gi|121996833|ref|YP_001001620.1| two component LuxR family transcriptional regulator [Halorhodospira halophila SL1] gi|121588238|gb|ABM60818.1| two component transcriptional regulator, LuxR family [Halorhodospira halophila SL1] Length = 216 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 10/107 (9%) Query: 138 FLMLANEVIIEA--------HGACYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + +IEA C++V L S +LT RE L + Sbjct: 103 HKGADRDELIEAIRSVYLGRRYICHEVARHVALNSLDGTGESPFDHLTPREFEVLMRILN 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G IA+ L LS TV+ Y +L N Q AI +G + Sbjct: 163 GQRGTSIAKDLCLSPKTVSTYRSRIFERLGVRNDAQLTRIAIDYGLL 209 >gi|84501462|ref|ZP_00999667.1| putative transcription regulator protein [Oceanicola batsensis HTCC2597] gi|84390753|gb|EAQ03241.1| putative transcription regulator protein [Oceanicola batsensis HTCC2597] Length = 232 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A LT RE L+L G ++ IA LGLS HTV ++ KL+ NR A Sbjct: 154 RPRLDDAAGLTGRELQVLELVSAGKQNKSIANDLGLSEHTVKLHIHHVLAKLNVRNRTGA 213 >gi|328755742|gb|EGF69358.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] Length = 206 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 2/109 (1%) Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 G F + ++ A + I L + L+ RE L+ Sbjct: 97 RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LA G + IA +L LSV TV ++ SA K A NR +A A R G Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204 >gi|319796066|ref|YP_004157706.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598529|gb|ADU39595.1| regulatory protein LuxR [Variovorax paradoxus EPS] Length = 260 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 16/223 (7%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L +Q + ++ ++S + + D + Sbjct: 35 LRAMQRVMPVTFCTVFAVSSTGRIEAVSAASSYGSTAERT-TERYVEQRFDLLDPNMAWL 93 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLE--GGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + LP Q E + R G + + + L + V F Sbjct: 94 AARKLPQRPQLWLGHQRAEEVADPAYRAACYGDVGIRERASVLLLLPTGQRVAVSFYRSL 153 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLA 185 + A + + RS+ A L+ RE + Sbjct: 154 AQPEFDATDFARIEAHATLLADATAAHGRSAMAVRESVVPALASRLLTLSLREREVIGHL 213 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 G T++E A +LG+ + TV + A +L ++ + + +A Sbjct: 214 MAGKTAKEAARELGVELTTVRTHQYRAFRRLGIRSQKELLLRA 256 >gi|255039009|ref|YP_003089630.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254951765|gb|ACT96465.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 267 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 34/68 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT RE L + G G S+EI+ L +SVHTVN + KL A N I+A+ Sbjct: 199 RIDPGIKLTSREKEILGMIGKGKLSKEISALLDISVHTVNTHRQRILEKLHADNSIEALQ 258 Query: 227 KAIRFGYI 234 A G + Sbjct: 259 SAKMIGLL 266 >gi|91786468|ref|YP_547420.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91695693|gb|ABE42522.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 297 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 60/215 (27%), Gaps = 22/215 (10%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI--- 67 + L E L Y + +L N + + Sbjct: 89 MTGLSETPHVLEGFA-CGGVD----YVVKPLRAQEVVARLHTHTRNARMTRLAREAVDVA 143 Query: 68 -LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D +W E + ++G+L + L + Sbjct: 144 GFGVVLVDAKGRVAWRSPQAALWLQTPE--GLAAAGELPDPVHAALGGKTDQV--LMTLA 199 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + V + +++E GA + A LT RET L Sbjct: 200 GRQLSVRNMGRVGIGETMLLLEQRGANGMAPSRL---------ANAALTPRETEVLSWLA 250 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 G T+++I + LG+S TVN +L KL R Sbjct: 251 KGKTNKDIGDILGMSHRTVNKHLEHIFEKLGVETR 285 >gi|16080219|ref|NP_391046.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221311111|ref|ZP_03592958.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315438|ref|ZP_03597243.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320354|ref|ZP_03601648.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324638|ref|ZP_03605932.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|296330772|ref|ZP_06873248.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675755|ref|YP_003867427.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|321312713|ref|YP_004205000.1| two-component response regulator [Bacillus subtilis BSn5] gi|116903|sp|P14204|CMPA_BACSU RecName: Full=Transcriptional regulatory protein ComA; AltName: Full=Competence protein A gi|142701|gb|AAA22320.1| A competence protein 1 [Bacillus subtilis] gi|1934772|emb|CAB07904.1| comAA [Bacillus subtilis subsp. subtilis str. 168] gi|2635663|emb|CAB15156.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|10119872|dbj|BAB13494.1| ComA respons regulator [Bacillus subtilis] gi|291485617|dbj|BAI86692.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] gi|296152086|gb|EFG92959.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413999|gb|ADM39118.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|320018987|gb|ADV93973.1| two-component response regulator [Bacillus subtilis BSn5] Length = 214 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 42/95 (44%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L E++++ + + LT RE LQ G+T++EIA+ L Sbjct: 120 VLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECLILQEVEKGFTNQEIADALH 179 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS ++ L S KL+ +R +A+ A G + Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL 214 >gi|332980886|ref|YP_004462327.1| LuxR family transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698564|gb|AEE95505.1| transcriptional regulator, LuxR family [Mahella australiensis 50-1 BON] Length = 479 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE+ + L +G T IA +L LS +TV ++ + K +R + I + Sbjct: 416 QLTKRESEIVALLLEGKTYRMIAGELHLSENTVKTHIKNVYAKYKIQSRAELINIMLEQ 474 >gi|324999047|ref|ZP_08120159.1| transcriptional regulatory protein DegU [Pseudonocardia sp. P1] Length = 220 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---------CYQVITDFLELFKKRSSAARNL 174 L GY++ L ++ + A G LE + A L Sbjct: 100 LRAGAAGYLLKRIGGEELVRQLELAATGVTVVDATMAGRAAASAARLERNEFWPGARLGL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE+ L L G+++ +A +L + TV +++ S KLD +R A+A A+R G Sbjct: 160 THRESEVLALLVAGHSNRSVAAELVIGEETVKSHVRSVLRKLDVPDRTAAVAAALREG 217 >gi|315222100|ref|ZP_07864010.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188850|gb|EFU22555.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 227 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++++ E +Q G G +++EIA KL LS TV YL +L+ +R Q A++ Sbjct: 155 EDMSQTEWKIIQQIGFGVSNKEIAAKLFLSEGTVRNYLSGILAELNLRDRTQLAIWAVQT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|312960767|ref|ZP_07775272.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284425|gb|EFQ63001.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 206 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ +L G T++EIA +L +S +TV ++ S L+ NR A+A A G Sbjct: 145 KLTSRQREVWRLIAQGKTNKEIAAELEISPYTVRIHVSSLIRVLNVPNR--AVAAARFAG 202 >gi|154245688|ref|YP_001416646.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] gi|154159773|gb|ABS66989.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] Length = 213 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 12/134 (8%) Query: 112 LLPFAGIAFPVR--LGFHK-----NGYVIFTSEFLMLANEVIIEAHGACYQVITD----- 159 L G PV G + ++FL + + + Sbjct: 75 HLQEKGSTVPVIVVTGHGDVPLAVEAMKLGAADFLEKPFDDVAILDTVKSALARREKAYQ 134 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L ++ S L++RE L+ G ++ IA +LG+S TV Y + K+ A Sbjct: 135 HDALREQVSERIAALSQRERQVLECLVVGQANKTIAYELGISPRTVEVYRANVMTKMKAQ 194 Query: 220 NRIQAIAKAIRFGY 233 + + + A+ G Sbjct: 195 SLSELVRMALLAGI 208 >gi|84496282|ref|ZP_00995136.1| putative two-component system response transcriptional regulator [Janibacter sp. HTCC2649] gi|84383050|gb|EAP98931.1| putative two-component system response transcriptional regulator [Janibacter sp. HTCC2649] Length = 218 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G + TS + + E +++A + R + L+ +E L+ G Sbjct: 110 RGADLVTSIRRVASGENLLDAGVVARLRTGWGRDAEDPRLAP---LSPQERRILEHIAQG 166 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+ +I + + L+ TV Y+ S K+ +R QA G Sbjct: 167 LTNRQIGQAMSLAEKTVKNYVTSVLAKMGLESRTQAAVYVASQG 210 >gi|90419335|ref|ZP_01227245.1| two-component, nitrogen fixation regulatory protein fixJ [Aurantimonas manganoxydans SI85-9A1] gi|90336272|gb|EAS50013.1| two-component, nitrogen fixation regulatory protein fixJ [Aurantimonas manganoxydans SI85-9A1] Length = 206 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + ++L+ RE L G+ ++ IA LGLS TV + + K++A + + + Sbjct: 135 RIQGRLQSLSPRERQVLDGLLAGHPNKTIAYDLGLSPRTVEVHRANVMTKMEASSLSELV 194 Query: 226 AKAIRFG 232 A+R G Sbjct: 195 RMAVRAG 201 >gi|17232904|ref|NP_489442.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134894|dbj|BAB77450.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 223 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TER+ L+L G ++IA+++ LSV TV Y K NR +AI + Sbjct: 153 DPPTERQIQVLRLLAQGLVFQDIAKEMFLSVSTVKQYASDLYSKWHVKNRYEAIKRGAML 212 Query: 232 GYI 234 GYI Sbjct: 213 GYI 215 >gi|17227478|ref|NP_478660.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134944|dbj|BAB77499.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 223 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TER+ L+L G ++IA+++ LSV TV Y K NR +AI + Sbjct: 153 DPPTERQIQVLRLLAQGLVFQDIAKEMFLSVSTVKQYASDLYSKWHVKNRYEAIKRGAML 212 Query: 232 GYI 234 GYI Sbjct: 213 GYI 215 >gi|328883671|emb|CCA56910.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + ++ L+E+E L L G+G ++ + +L +S TV Y+ Sbjct: 136 HVVERLAAGREMTRAEEARGRVAGLSEKEREVLALLGEGLSNADAGRRLHMSEATVKTYV 195 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KLD NR+QA A G Sbjct: 196 SRILAKLDCENRVQAALLARDAGL 219 >gi|306407932|dbj|BAJ16474.1| regulatory protein [Streptomyces graminofaciens] Length = 243 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 SS + L+ +E + G + EIA ++ L+ TV YL KL +R Q Sbjct: 168 RTGDSSPSLALSPQEREIMTRLASGLSVREIAVEMRLAEKTVRNYLSHIYGKLGVRSRSQ 227 Query: 224 AIAK 227 A+ + Sbjct: 228 ALLR 231 >gi|304392975|ref|ZP_07374906.1| glycerol metabolism activator [Ahrensia sp. R2A130] gi|303294973|gb|EFL89342.1| glycerol metabolism activator [Ahrensia sp. R2A130] Length = 279 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT +++ L + G +++IA +L +S TV A++ + KL+ +R QA+ + Sbjct: 210 RLQTLTPQQSRVLSMISQGLLNKQIAYELSVSEATVKAHVSAVLSKLNVDSRTQAVIQIS 269 Query: 230 RFG 232 + G Sbjct: 270 KLG 272 >gi|304313067|ref|YP_003812665.1| DNA-binding response regulator [gamma proteobacterium HdN1] gi|301798800|emb|CBL47033.1| DNA-binding response regulator [gamma proteobacterium HdN1] Length = 221 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 32/76 (42%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +S L+ERE + +EI++KL LS TVN+Y KL Sbjct: 135 ALKPFSPAEASPFEQLSERELQIAMMIVGCQKVQEISDKLFLSPKTVNSYRYRIFEKLAI 194 Query: 219 VNRIQAIAKAIRFGYI 234 + ++ A+R G + Sbjct: 195 TSDVELTLMAVRHGMV 210 >gi|291437530|ref|ZP_06576920.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340425|gb|EFE67381.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 268 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE + L G +++IA +S TV ++ KL + +R +A AK Sbjct: 201 QLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAAK 255 >gi|261218196|ref|ZP_05932477.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261320956|ref|ZP_05960153.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|260923285|gb|EEX89853.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293646|gb|EEX97142.1| two component transcriptional regulator [Brucella ceti M644/93/1] Length = 254 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 186 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238 >gi|251800174|ref|YP_003014905.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547800|gb|ACT04819.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 229 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 157 ITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + L L ++ AA L+E+E +Q DG+T++EIA L ++ TV ++ + +K Sbjct: 150 MKQLLHLKHSPAARAAYALSEKELRVMQYIADGFTTKEIAPFLNIAESTVKYFINNVMLK 209 Query: 216 LDAVNRIQAIAKAIRFGYI 234 + NR +A+A R + Sbjct: 210 TSSRNRTEAVANLYRANLL 228 >gi|163788538|ref|ZP_02182983.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1] gi|159875775|gb|EDP69834.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1] Length = 207 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L++RE L +G + + IAE L +S +T+ +L + +KL + I+A+ KA Sbjct: 142 PSKIELSKREKDVLLQLSEGNSYDSIAENLFISKNTIKFHLKNIYIKLQVNSNIEAVQKA 201 Query: 229 IRFGYI 234 + + Sbjct: 202 NKENLL 207 >gi|108763932|ref|YP_633456.1| LuxR family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108467812|gb|ABF92997.1| transcriptional regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 902 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 E S+ LTERE L+L G +++EI+E+ +++ T +L + KLD Sbjct: 827 REFAAPPSAPLEPLTERELQMLKLLAQGLSNQEISERSNVALSTTKWHLRNVFAKLDVTT 886 Query: 221 RIQAIAKAIRF 231 R AI KA Sbjct: 887 RTAAIVKAQER 897 >gi|37676721|ref|NP_937117.1| response repressor in two-component regulatory system with UhpB [Vibrio vulnificus YJ016] gi|326424246|ref|NP_762471.2| transcriptional regulatory protein UhpA [Vibrio vulnificus CMCP6] gi|37201264|dbj|BAC97087.1| response repressor in two-component regulatory system with UhpB [Vibrio vulnificus YJ016] gi|319999632|gb|AAO07461.2| Transcriptional regulatory protein UhpA [Vibrio vulnificus CMCP6] Length = 206 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I L ++++ LT RE QL G + IA +LGLS TV+ + +A KL Sbjct: 130 IAMKLATPNDKATSLTQLTRRENEVCQLLARGLDVKSIAAELGLSHKTVHVHRANAIDKL 189 Query: 217 DAVNRIQAIAK 227 N ++ Sbjct: 190 GVKNNVELAKL 200 >gi|332526411|ref|ZP_08402533.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332110543|gb|EGJ10866.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 211 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERE 178 L GYV E + + V A G Y L + ++ + L++RE Sbjct: 94 LRGGAFGYVNKGGEPRQIVDAVRTVAQGRKYVTPEIAQMLVESLTAPVLETPHQKLSDRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + G +IAE+L LS TV+ Y KL N + AIR G + Sbjct: 154 LQTLVMIASGKRLADIAEELMLSPKTVSVYRARVLEKLQLANNSELTVYAIRNGLV 209 >gi|313835697|gb|EFS73411.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928368|gb|EFS92199.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970220|gb|EFT14318.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] Length = 228 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++R+ + L G +++EI++ L L+ TV ++ L R QAI ++ Sbjct: 163 GLSDRQAEVMDLIAAGQSNKEISKTLFLAEKTVKNHINQIFATLGVTTRAQAIVLWLQ 220 >gi|302868454|ref|YP_003837091.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302571313|gb|ADL47515.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 256 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L L+ RE L +G ++ +IA +L L+ TV +L + KL AV+R Sbjct: 157 SLDHVYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSR 216 Query: 222 IQAIAKAIRFGYI 234 I A+ KA+ I Sbjct: 217 IDAVNKAVAASII 229 >gi|266622694|ref|ZP_06115629.1| conserved domain protein [Clostridium hathewayi DSM 13479] gi|288865559|gb|EFC97857.1| conserved domain protein [Clostridium hathewayi DSM 13479] Length = 369 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+ E +L +G T + IA++L +S HTV ++ + K +R Q Sbjct: 309 PLTQAEQRVAELMYNGLTYKAIADELVISYHTVKKHVQNIYTKCGVKSRFQL 360 >gi|225626731|ref|ZP_03784770.1| Monoamine regulon transcriptional regulator [Brucella ceti str. Cudo] gi|237814663|ref|ZP_04593661.1| Monoamine regulon transcriptional regulator [Brucella abortus str. 2308 A] gi|225618388|gb|EEH15431.1| Monoamine regulon transcriptional regulator [Brucella ceti str. Cudo] gi|237789500|gb|EEP63710.1| Monoamine regulon transcriptional regulator [Brucella abortus str. 2308 A] Length = 257 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 189 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 241 >gi|15640491|ref|NP_230118.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590711|ref|ZP_01678043.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|153819151|ref|ZP_01971818.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153823185|ref|ZP_01975852.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|227080674|ref|YP_002809225.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|229507102|ref|ZP_04396608.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286] gi|229509062|ref|ZP_04398550.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|229519730|ref|ZP_04409173.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|229606243|ref|YP_002876891.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] gi|254226311|ref|ZP_04919902.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|254850695|ref|ZP_05240045.1| transcriptional regulator [Vibrio cholerae MO10] gi|298501005|ref|ZP_07010806.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9654890|gb|AAF93637.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547442|gb|EAX57551.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|125621173|gb|EAZ49516.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|126510296|gb|EAZ72890.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126519311|gb|EAZ76534.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|227008562|gb|ACP04774.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|229344419|gb|EEO09394.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|229353987|gb|EEO18921.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|229355847|gb|EEO20767.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286] gi|229368898|gb|ACQ59321.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] gi|254846400|gb|EET24814.1| transcriptional regulator [Vibrio cholerae MO10] gi|297540253|gb|EFH76313.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 267 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 27 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 84 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 144 PRSFPREQITALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 203 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIAE L +S TV + +L + + Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 253 >gi|114566607|ref|YP_753761.1| ATP-dependent transcriptional regulator-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337542|gb|ABI68390.1| ATP-dependent transcriptional regulator-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 823 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 5/130 (3%) Query: 101 SGQLSVRLEGGLLPFAGIAFPV---RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157 V G+ P + ++ L + Sbjct: 694 QAAAFVEDAARKALPDGLVSPFASYSQLLGDLVDEVIARDYPALLEKFKTVRKRFSQGWF 753 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 T LF +LTERE +LA G + EIAEKL ++ TV +++ + KL Sbjct: 754 TLREALFSGELPP--DLTEREYEVAKLAATGLRNSEIAEKLVITESTVRSHMRTIFQKLQ 811 Query: 218 AVNRIQAIAK 227 R + K Sbjct: 812 IDRRTRLAEK 821 >gi|291299577|ref|YP_003510855.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568797|gb|ADD41762.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 212 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 44/110 (40%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G F + + Q + D + LT+RE L Sbjct: 103 RALDAGASGFLVKDGPVDGLARAIRSVVNGQTVIDPDLAAGAIRAGESPLTDREREVLAA 162 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG + +IA++L LS TV YL SA K NRI+A+ KA G++ Sbjct: 163 AEDGARATDIAKRLHLSDSTVRNYLSSAISKTGTRNRIEAVKKARELGWL 212 >gi|229490111|ref|ZP_04383959.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] gi|229322987|gb|EEN88760.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] Length = 243 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + ++ +AA LT++E +L G G ++ EI+ LS TV Y+ KL Sbjct: 134 LVRRIRSEQESGTAAALLTDQELLIFELIGKGLSNREISSHAELSEKTVKNYVSRILEKL 193 Query: 217 DAVNRIQAIAKAIRF 231 R QA A + Sbjct: 194 GLERRTQAAVLATKL 208 >gi|197106265|ref|YP_002131642.1| response regulator [Phenylobacterium zucineum HLK1] gi|196479685|gb|ACG79213.1| response regulator [Phenylobacterium zucineum HLK1] Length = 201 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 17/153 (11%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVR--LGFHKNGYVIFTSEFLMLAN------- 143 + +L RL G+ PV G + + + Sbjct: 54 DVRMPEMNGLELVRRLRTR-----GVTQPVIVITGHGDVPLAVEAMKAGVADFLEKPFDD 108 Query: 144 EVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 E ++ A A +R S L+ RE L+ G ++ IA +LG+ Sbjct: 109 EALLSAVRAALDTRVQDDRQDAERQKFESMLAGLSPREQDVLRGVVAGKPNKIIAFELGI 168 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 S TV Y + K A + + + A+ G+ Sbjct: 169 SPRTVEVYRANVMTKTGASSLSELVRMALLAGF 201 >gi|192290784|ref|YP_001991389.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284533|gb|ACF00914.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 210 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 5/112 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTE 176 P+ + K G V F ++ ++ +++A A ++ E KR+ LT Sbjct: 90 VPMTVRGMKAGAVDFLTK--PFRDQEMLDAVSAAVELDRRRREAEHKRNEIVQRFDALTP 147 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE ++ G ++ +A LGLS TV + G K+ A + + A Sbjct: 148 REKQIFEMVSAGSMNKNVAADLGLSEITVKIHRGRVMKKMGARSLADLVRMA 199 >gi|218531623|ref|YP_002422439.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218523926|gb|ACK84511.1| two component transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 300 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 42/155 (27%), Gaps = 12/155 (7%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + ++ E + A + + + F Sbjct: 153 VLWCTPQAAQVLAALGASEPLSLPPSGRDWLARCLAGTAAPLTLT--DAQGRIHTLSFIG 210 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 I + L ++ +T RE L G +S +I E Sbjct: 211 RTGPE-----ILLRLSGDPAAAGLERLRERL-----PITGREAEVLLWLSRGKSSRDIGE 260 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LGLS TV +L KL NR A A A R Sbjct: 261 ILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295 >gi|149187707|ref|ZP_01866004.1| DNA-binding response regulator, LuxR family protein [Vibrio shilonii AK1] gi|148838587|gb|EDL55527.1| DNA-binding response regulator, LuxR family protein [Vibrio shilonii AK1] Length = 249 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 16/161 (9%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS---EFLMLANE 144 WQ E + + S L + GI + L G + F+ + L+ E Sbjct: 83 TWQMFDSEALAKHSLDPVKELYREGARWHGI-IRLELFGQTWGALAFSRFSLDEPPLSEE 141 Query: 145 VIIEAHGAC--------YQVITDFLELFK----KRSSAARNLTERETSCLQLAGDGYTSE 192 + C + +T L L S L++++ + L L GYT++ Sbjct: 142 NLKRLRLLCDIWLCFWQHATMTRNLSLDDSNAVDESEKLLLLSKKQCTVLTLLAQGYTAK 201 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + AEKL LS T+ ++ LD N + + A+R G Sbjct: 202 QCAEKLFLSPRTIESHKYRMLDILDLDNHTELVQFALRNGL 242 >gi|152983891|ref|YP_001349304.1| LuxR family DNA-binding response regulator [Pseudomonas aeruginosa PA7] gi|150959049|gb|ABR81074.1| DNA-binding response regulator, LuxR family [Pseudomonas aeruginosa PA7] Length = 210 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 9/145 (6%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF------HKNGYVIFTSEFLMLANEV 145 + + L L A I + G F + + Sbjct: 55 LDLRFPGLTRIDLLADLRRRFPRTALIVVSMVDDPQLIAEVMDAGVDGFLGKSIAPEELG 114 Query: 146 IIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V+ + L + S+ LTER+ L+L G +++EI L +S Sbjct: 115 EAILAIRAGEVLVRYEPSGLLPLESSALLDGLTERQLDVLRLLAQGKSNKEIGRVLDISH 174 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 +TV ++ S LD +R A K Sbjct: 175 YTVRIHVSSLLKALDVPSRTAAAVK 199 >gi|59713286|ref|YP_206061.1| two component response regulator [Vibrio fischeri ES114] gi|59481534|gb|AAW87173.1| two component response regulator [Vibrio fischeri ES114] Length = 205 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 8/143 (5%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 +I + + E GQ L + ++ G + + Sbjct: 58 AILDSRMPELRGQDVHELLKQ--QNSPLSVIFLTGHGDIPMAVDALKAGAADFFQKPVDG 115 Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + I + L +KR + +LT RE L+L G ++++A+ + +S+ T Sbjct: 116 EELFIAIKNGLAASEKRYKSQDAHRSYLSLTAREQEVLKLIVQGMKNQQMADAMCVSLRT 175 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 + + + KL + + I + Sbjct: 176 IEVHRSNLMKKLGVNSVVDLIMR 198 >gi|87123578|ref|ZP_01079429.1| two-component response regulator [Synechococcus sp. RS9917] gi|86169298|gb|EAQ70554.1| two-component response regulator [Synechococcus sp. RS9917] Length = 250 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + + F + +++ E + + T RE S LQL +G Sbjct: 145 LLAEAARFADADVGQMARQINEIRSMLSGAAAEAVAAAEAPQLSFTPREASVLQLVAEGL 204 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA +L S+ V Y+ +K +R + + A++ + Sbjct: 205 MNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRFALQHRLV 249 >gi|115526593|ref|YP_783504.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520540|gb|ABJ08524.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 309 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 26/50 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE+ L G T+ +IA+ LGLS TV+ +L KL NR Sbjct: 246 GLTTRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRT 295 >gi|313675285|ref|YP_004053281.1| two component transcriptional regulator, luxr family [Marivirga tractuosa DSM 4126] gi|312941983|gb|ADR21173.1| two component transcriptional regulator, LuxR family [Marivirga tractuosa DSM 4126] Length = 215 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +++RE L+L D +++EIA+KL +S+ TV A+ + K + + AI Sbjct: 151 AISKREKEVLRLIIDELSNQEIADKLFISIRTVEAHKRNLMEKTGSKTLAGLVKYAI 207 >gi|160895826|ref|YP_001561408.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361410|gb|ABX33023.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 245 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 13/136 (9%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 + + G ++ ++ + ++ L L ++R+ A Sbjct: 105 FGDEQHVLAAIEAGAMGYLLKDLAADAVLEEVRSLHAGGSPINPMVARKLLLRQQRAGAV 164 Query: 172 RNL-------------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L + RE L+L G+T +E+A +LG+S HTV ++ KL Sbjct: 165 AGLQPPAEPQAAAQALSARELEVLRLVARGHTLDEVARQLGVSRHTVRTFVRRIYGKLQV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +R Q + A++ G++ Sbjct: 225 SSRTQMMHVALQRGWL 240 >gi|94495970|ref|ZP_01302549.1| two component transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|94424662|gb|EAT09684.1| two component transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] Length = 209 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G + + L LT+RE L DG ++ IA LG+S TV + Sbjct: 128 GLSARAMEAQARLN--------VLTDRERDVLNGLVDGLPNKTIAYDLGISPRTVEIHRA 179 Query: 211 SATVKLDAVNRIQAIAKAIRFG 232 + KL+ + +A+ A G Sbjct: 180 NLMQKLEVRSLAEALRIAFHAG 201 >gi|167763839|ref|ZP_02435966.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC 43183] gi|298480014|ref|ZP_06998213.1| transcriptional regulator [Bacteroides sp. D22] gi|167697955|gb|EDS14534.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC 43183] gi|298273823|gb|EFI15385.1| transcriptional regulator [Bacteroides sp. D22] Length = 183 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++R+ +++ DG EIAEKL +S++TVN + ++ K+ + + + A+ Sbjct: 121 KLSDRQIEVMRMLYDGKNDSEIAEKLFISLNTVNNHRKNSFRKVGVHSMAEFMRYAMTNN 180 Query: 233 Y 233 Sbjct: 181 L 181 >gi|134103488|ref|YP_001109149.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005968|ref|ZP_06563941.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916111|emb|CAM06224.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 217 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 2/126 (1%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 +G V ++ + A + L Sbjct: 90 RALHGGASGFLLKTGDPRELVLGVRAAADGGAYLSP--PVARRVIRDLGGPRLSREVAAR 147 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L+ERE L L G G ++ EIA ++ + TV AY+ + L NR+QA A Sbjct: 148 NRIEGLSERERQVLALVGAGLSNAEIARRVHVVEGTVKAYVSAILNHLGFRNRVQAAILA 207 Query: 229 IRFGYI 234 G + Sbjct: 208 YEAGLV 213 >gi|254247770|ref|ZP_04941091.1| Response regulator [Burkholderia cenocepacia PC184] gi|124872546|gb|EAY64262.1| Response regulator [Burkholderia cenocepacia PC184] Length = 212 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177 P+ + K G + F E E+ + ++ + ++R++ LT R Sbjct: 97 VPMAVSTMKKGAMDFI-EKTFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+ G +++IA+ LG+S+ TV A+ + KL+ + A+ Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207 >gi|331005230|ref|ZP_08328623.1| Transcriptional regulator, LuxR family [gamma proteobacterium IMCC1989] gi|330420973|gb|EGG95246.1| Transcriptional regulator, LuxR family [gamma proteobacterium IMCC1989] Length = 219 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K ++ LT ++ L +G+ +++I ++G++ TV A++ + KL NR Q Sbjct: 141 EKSLAARISTLTPQQYRVLCYVREGWLNKQIGFEIGITEATVKAHITAIFRKLGVTNRTQ 200 Query: 224 AIA 226 A+ Sbjct: 201 AVI 203 >gi|269216157|ref|ZP_06160011.1| transcriptional regulator, LuxR family [Slackia exigua ATCC 700122] gi|269130416|gb|EEZ61494.1| transcriptional regulator, LuxR family [Slackia exigua ATCC 700122] Length = 545 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RET + G + IAE+L +S +TV + KLD +R + A Sbjct: 487 GLSTRETEVCEAIARGLSMATIAERLFISENTVRTHSRHIYAKLDIHSRQELGAM 541 >gi|266631096|emb|CBH32096.1| putative two-component response regulator [Streptomyces albaduncus] Length = 201 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 41/105 (39%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G F + V A + + D + LT+RE L+L G Sbjct: 97 GVAGFLHKDSPPEKLVSAIRDLAAGRRVIDADLAMSAWQTPLPPLTDRELEVLRLTATGE 156 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA +L LS TV YL + KL+A R+ A+ A G++ Sbjct: 157 AVPAIATRLHLSPGTVRNYLTTVESKLNARTRVDAVRIATDAGWL 201 >gi|194292793|ref|YP_002008700.1| two component response regulator transcriptional regulator protein [Cupriavidus taiwanensis LMG 19424] gi|193226697|emb|CAQ72648.1| putative TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 226 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GYT E A LGLSVHTV +++ + KL +R +A+ +A + G Sbjct: 163 LSVRENEILDLISRGYTYAETARYLGLSVHTVQSHIKNIYGKLAVRSRGEAVFEAAKLGL 222 Query: 234 I 234 + Sbjct: 223 L 223 >gi|13488505|ref|NP_109512.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14028259|dbj|BAB54851.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 230 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 151 GACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++++D + R LTER+T L+L +G +++E+A +L L TV + Sbjct: 130 MLSARLLSDLQSPQSANGVADRLRQLTERQTEILRLVAEGLSNKEVALRLELQEKTVKHH 189 Query: 209 LGSATVKLDAVNRIQAIAK 227 + KL+ NR +A Sbjct: 190 MTGVLSKLNVRNRTEAALM 208 >gi|326802187|ref|YP_004320006.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326552951|gb|ADZ81336.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 216 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E L G + + + +L ++ TV +++ KL + +A+AKA+ Sbjct: 155 GLTNKEREVLSCIVRGMSYKMVGHELNITYDTVRSHVKKIYEKLHVASLTEAVAKAVSQR 214 Query: 233 YI 234 + Sbjct: 215 IV 216 >gi|302554479|ref|ZP_07306821.1| response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472097|gb|EFL35190.1| response regulator [Streptomyces viridochromogenes DSM 40736] Length = 222 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + L +++ + + + A +T RE L+L +G Sbjct: 120 QAVLAAARGDGDLPADLLGRLINQVGTLHRGT---AGRPGAPASGMTPRELDVLRLVAEG 176 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA KL S TV + T +L NR A+A A+R GYI Sbjct: 177 LDTGEIASKLSYSERTVKNVMHGLTTRLHLRNRAHAVAHALREGYI 222 >gi|262200493|ref|YP_003271701.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083840|gb|ACY19808.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 271 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + + +LT E L GYT+++IA L +SV+TV + Sbjct: 189 LDALAAKAMRAIRA---QALPEQFHLTPSERRVLDFLPSGYTADQIAGMLSVSVNTVKTH 245 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 S KL R A+ A R G + Sbjct: 246 SRSIYRKLQVSTRRDAVMVARRAGLL 271 >gi|255015802|ref|ZP_05287928.1| transcriptional regulator [Bacteroides sp. 2_1_7] Length = 203 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE + G T+ EIA++L LS HTV + + KL + AI Sbjct: 134 QSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVN 193 Query: 232 GYI 234 + Sbjct: 194 KLV 196 >gi|227833967|ref|YP_002835674.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum ATCC 700975] gi|262183544|ref|ZP_06042965.1| transcriptional regulator, LuxR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227454983|gb|ACP33736.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum ATCC 700975] Length = 279 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++ E C Q+++ R + L+ RE L G+T+ E AE+ Sbjct: 188 NRVNDEDLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 241 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 242 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276 >gi|227541066|ref|ZP_03971115.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227183326|gb|EEI64298.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 280 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + EV E C Q+I R L+ RE L G+T+ E A++ Sbjct: 189 NRITDEEVRNELEVLCDQMIAPV------RIKPTTKLSARELDVLSCVALGHTNVEAAKE 242 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 243 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 277 >gi|167590736|ref|ZP_02383124.1| putative transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 169 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE +QL G+ +++IA++L +S TV +YL + KL +R + + Sbjct: 103 LSSREMQVVQLVCMGFLTKQIADRLHISEFTVRSYLKTIYAKLGVRSRAALVFR 156 >gi|89899702|ref|YP_522173.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344439|gb|ABD68642.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 217 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 41/84 (48%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V++D+++ + + LT R+ LQL +G +++EIA +L L+V TV ++ Sbjct: 130 AVSKGVVSDYVQRLRGEAQPGAQLTPRQREVLQLIAEGQSTKEIARRLDLAVKTVESHRS 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +LD + A+ G + Sbjct: 190 QLMKQLDIHEVAGLVRYAMHVGVV 213 >gi|302557514|ref|ZP_07309856.1| LuxR family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302475132|gb|EFL38225.1| LuxR family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 144 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Query: 125 GFHKNGY--VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + V L I + + L + S LT RE L Sbjct: 32 GASGAAWEQVREAHAALRALAPRIADPALRAELLQACALLTAETAPSVTVRLTPREVDVL 91 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ AE+LG++ TV AYL SA KL R QA+ A R G++ Sbjct: 92 ACVAAGATNGVAAERLGVTAETVKAYLRSAMRKLGVRTRGQAVVAARRAGWL 143 >gi|301310989|ref|ZP_07216918.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3] gi|300831052|gb|EFK61693.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3] Length = 203 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE + G T+ EIA++L LS HTV + + KL + AI Sbjct: 134 QSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVN 193 Query: 232 GYI 234 + Sbjct: 194 KLV 196 >gi|299538173|ref|ZP_07051458.1| competence protein A [Lysinibacillus fusiformis ZC1] gi|298726375|gb|EFI66965.1| competence protein A [Lysinibacillus fusiformis ZC1] Length = 211 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT++E S L+ GY+++EIA++L LS+ + L KL +R +A+ + IR Sbjct: 146 LTQKEISILRSLIKGYSNQEIADELFLSIRAIEYNLTKIYKKLGVNSRTEAVTEVIRLDI 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|302554181|ref|ZP_07306523.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471799|gb|EFL34892.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 216 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + S LT RE L G+G ++ IAE+L ++ TV ++ Sbjct: 134 RLIAEFAAKPAREPTADLSVLDRLTRREREVLSCLGEGLSNAGIAERLDMAEATVKTHVS 193 Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233 KL+ +R+QA A G Sbjct: 194 RLLGKLELRSRVQAAVLAQELGI 216 >gi|295838815|ref|ZP_06825748.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74] gi|295827204|gb|EDY42294.2| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74] Length = 260 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 155 QVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +V+ E + +R L+ RE L L G G T+ +IAE+L L+ TV Sbjct: 167 RVMARIREPRPGKPEPSRAVPGELARLSPRELEILDLIGLGLTNRQIAERLYLAEKTVKN 226 Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231 + S KL RIQA A R Sbjct: 227 RVSSILGKLGVGRRIQAAMLAERL 250 >gi|239816808|ref|YP_002945718.1| LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803385|gb|ACS20452.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 161 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 38/110 (34%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 R F + + L + V + L + LT RE + Sbjct: 49 RSEFRRAAWQADRYRRAGLEHAVAVAFLYRLACRAAVPLHDVPLSDAPLAGLTPREGDVM 108 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G T EIA L +S TV+ +L VKL R A+ +A+ G Sbjct: 109 HWLSRGKTDAEIAALLEISPRTVHKHLEHVYVKLGVETRTAAVVRALAMG 158 >gi|209521106|ref|ZP_03269835.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209498452|gb|EDZ98578.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 220 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 47/154 (30%), Gaps = 13/154 (8%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVR------LGFHKNGYVIFTSEFLMLAN--E 144 S + R+ + F V G + + ++ E Sbjct: 58 DVSLPGASGIEAMRRMLAREPDARVLIFSVHEESIFVRRALDAGALGYVTKASAPDVLVE 117 Query: 145 VIIEAHGACYQVITD-----FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + D L R L+ RE L+L GYT IAEKLG Sbjct: 118 AVRSIARRAGYLSPDVSQALALRTAFNEGPPGRQLSAREFEVLRLLVQGYTLPSIAEKLG 177 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS TV + K A N +Q A R G Sbjct: 178 LSQKTVANHQSVIRQKFGADNGVQLAQMANRLGL 211 >gi|206603220|gb|EDZ39700.1| Probable transcriptional regulator, LuxR family [Leptospirillum sp. Group II '5-way CG'] Length = 358 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 6/115 (5%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 PF AFP+ L F + + E I + Sbjct: 238 GPFRVRAFPLNLHFSLSLPEGIQNFRRRQDKERIRVL------FLEPLTPAPLLPGKTGG 291 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ ++ + G +++ IAE LG++ TV +L + KL NR + I Sbjct: 292 LLSPKQLEVTRRVLQGCSNKRIAETLGITEQTVKDHLHAIFEKLRLKNRWELIVF 346 >gi|297580603|ref|ZP_06942529.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535019|gb|EFH73854.1| transcriptional regulator [Vibrio cholerae RC385] Length = 267 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 52/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 27 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L ++ V + Sbjct: 84 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERSIVVYLGCFK 143 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 203 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIAE L +S TV + +L + + Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 253 >gi|104782132|ref|YP_608630.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila L48] gi|95111119|emb|CAK15839.1| putative DNA-binding response regulator, LuxR family [Pseudomonas entomophila L48] Length = 204 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 10/135 (7%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-- 160 L L A + + V+ + + E GA + + Sbjct: 66 ARLAELRQQLPRTALVVLSMVDDPEVINAVMTAGADGFIGKSLTPEEIGAALLAVREGEV 125 Query: 161 --------LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L + S LT R+ L+L G T++EIA +L +S TV ++ S Sbjct: 126 VVRYAPSGLLHQEGADSELEQLTHRQHDVLRLIAQGKTNKEIARELDISPFTVRIHVSSL 185 Query: 213 TVKLDAVNRIQAIAK 227 L+ R A K Sbjct: 186 LKTLNVPTRTAAAVK 200 >gi|227540406|ref|ZP_03970455.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239730|gb|EEI89745.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 117 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++RE ++L +G ++ EIAEKL ++ TV + + +K N Q I ++ G Sbjct: 56 KFSKREVDIIKLIAEGLSNNEIAEKLFIASVTVKKHRQNILLKAGCKNTAQLIKNSVLQG 115 Query: 233 YI 234 I Sbjct: 116 LI 117 >gi|226363982|ref|YP_002781764.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242471|dbj|BAH52819.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 372 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 26/59 (44%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT RE L L G T+ I+ +L +S TV +++ KL R + A Sbjct: 304 PRAHALTAREREVLTLMATGATNATISRRLCISDGTVKSHVQRIFKKLGVSTRAEVAAL 362 >gi|195541891|gb|ACF98092.1| putative response regulator FixJ [uncultured bacterium 1042] Length = 206 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 5/117 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRS--SAARNLTE 176 P+ + K G + F +EV+I+A A +++ E S S L+E Sbjct: 89 VPMAVDAMKAGALDFI--EKPFDDEVLIDAIKRAAGRLVERRGEADDAASIQSRLGQLSE 146 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L G ++ IA L +S TV + S K+ A N + + A+ G+ Sbjct: 147 RELQVLSGVVAGLPNKTIAYDLDISPRTVEVHRASVMTKMQARNLPELVRMALATGF 203 >gi|27382418|ref|NP_773947.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355589|dbj|BAC52572.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 12/155 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + +++ R+ L + F V L + Sbjct: 69 VDFSMPRMTGVEVARRIRDYPLQTEVLIFTVHKSGLLAQQAFEAGARAFLTKSDANRSLL 128 Query: 152 ACYQVITDFLELFK------------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 A + + R LT RE ++L +GY+++ I+ L Sbjct: 129 AAVDALLVHKRFCSESCRNELDHGAGGEADRGRGLTPREQLVVKLVAEGYSNKGISAILN 188 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LSV T A+ +A KLD + + A+R + Sbjct: 189 LSVKTTEAHRAAAMRKLDVNSTAGLVRYAVRAQLV 223 >gi|302865626|ref|YP_003834263.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302568485|gb|ADL44687.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 223 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 38/88 (43%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + AH + ++ L+ERE L G G T+ EI+ +L +SV TV Sbjct: 136 LIAHVTGTAPVASPDPKRERAVRLLDGLSEREREVAVLLGRGRTNAEISAELFMSVATVK 195 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AY+ KLD NR+Q G + Sbjct: 196 AYVSRLLTKLDLNNRVQVALLVQDAGLV 223 >gi|262164964|ref|ZP_06032702.1| transcriptional regulatory protein UhpA [Vibrio mimicus VM223] gi|262027344|gb|EEY46011.1| transcriptional regulatory protein UhpA [Vibrio mimicus VM223] Length = 66 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G ++IA+ L LS TV+ + + KL+ N + I A++ Sbjct: 3 LTKREVEVFDLLVQGQDVKDIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFALQHHL 62 Query: 234 I 234 + Sbjct: 63 L 63 >gi|326797136|ref|YP_004314956.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Marinomonas mediterranea MMB-1] gi|326547900|gb|ADZ93120.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Marinomonas mediterranea MMB-1] Length = 894 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE LQ + +IA KL +S++T+ + + +KL+ +R A+ KA Sbjct: 832 EPLSEREQEVLQWLNTELSGPQIAAKLYVSLNTLRTHTKNIYMKLNVNSRRSAVVKANEL 891 Query: 232 GY 233 G Sbjct: 892 GL 893 >gi|320158823|ref|YP_004191201.1| transcriptional regulatory protein UhpA [Vibrio vulnificus MO6-24/O] gi|319934135|gb|ADV88998.1| transcriptional regulatory protein UhpA [Vibrio vulnificus MO6-24/O] Length = 203 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I L ++++ LT RE QL G + IA +LGLS TV+ + +A KL Sbjct: 127 IAMKLATPNDKATSLTQLTRRENEVCQLLARGLDVKSIAAELGLSHKTVHVHRANAIDKL 186 Query: 217 DAVNRIQAIAK 227 N ++ Sbjct: 187 GVKNNVELAKL 197 >gi|171849138|pdb|3CLO|A Chain A, Crystal Structure Of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (Np_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A Resolution gi|171849139|pdb|3CLO|B Chain B, Crystal Structure Of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (Np_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A Resolution gi|171849140|pdb|3CLO|C Chain C, Crystal Structure Of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (Np_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A Resolution Length = 258 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A A Sbjct: 198 LSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELXKL 257 Query: 234 I 234 + Sbjct: 258 L 258 >gi|113867311|ref|YP_725800.1| ATP-dependent transcription regulator LuxR [Ralstonia eutropha H16] gi|113526087|emb|CAJ92432.1| ATP-dependent transcriptional regulator,MalT-family [Ralstonia eutropha H16] Length = 947 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L++RE ++L G G +++IA LGLS TV +L + KL +R +A+A+ Sbjct: 874 ARLEELSDREADVVRLLGQGLPNKKIARTLGLSPETVKWHLRNIFRKLGVSSRDEAVARV 933 Query: 229 IRFGY 233 Sbjct: 934 RDREL 938 >gi|269793732|ref|YP_003313187.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095917|gb|ACZ20353.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 204 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 6/153 (3%) Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH---KNGYVIFTSEFLMLANE 144 + + +++ RL L I + V A+ Sbjct: 52 DVAVLDLQMPGLDGIEVAERLATQLPGCRCIIVTSHGRPGYLKRALAVGVRGFLPKTASA 111 Query: 145 VIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 +++ +++ + +S LT RE L LA DG +EIA+++ LS Sbjct: 112 LVVADVVRSVHAGGRYVDPELAAEAIASGDSPLTAREADVLALAADGSPVDEIAQRVSLS 171 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV YL +A +KL NR +A A A R G+I Sbjct: 172 AGTVRNYLSTAVMKLGVSNRHEAAATARRHGWI 204 >gi|253996438|ref|YP_003048502.1| two component LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983117|gb|ACT47975.1| two component transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 213 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ L + L+ RE +L +G ++IA L +S TV Y Sbjct: 132 IAQKIVMQSLA---GAADPTERLSAREFEVFRLLAEGSGVDDIALMLNVSQKTVANYQTI 188 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL N ++ + AIR+G I Sbjct: 189 LKQKLGITNAVELVRLAIRYGVI 211 >gi|330830188|ref|YP_004393140.1| GacA-like protein [Aeromonas veronii B565] gi|328805324|gb|AEB50523.1| GacA-like protein [Aeromonas veronii B565] Length = 214 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ F + ++L+ERE + + G +I+E+L LS TVN+Y Sbjct: 132 QMALSQFASADEN---PFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLF 188 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL ++ AIR+G + Sbjct: 189 SKLGINGDVELTHLAIRYGML 209 >gi|308186331|ref|YP_003930462.1| 2-component transcriptional regulator [Pantoea vagans C9-1] gi|308056841|gb|ADO09013.1| putative 2-component transcriptional regulator [Pantoea vagans C9-1] Length = 219 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S L+ERE + + G EI+E+L LS TVN+Y KL+ ++ Sbjct: 141 QKAESPFSCLSERELQIMLMITRGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 200 Query: 225 IAKAIRFGY 233 AIR G Sbjct: 201 THLAIRHGL 209 >gi|238025567|ref|YP_002909799.1| DNA-binding response regulator [Burkholderia glumae BGR1] gi|237880232|gb|ACR32564.1| DNA-binding response regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 226 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 41/114 (35%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + VR G + ++ ++ + + + + LT R Sbjct: 110 VTQAVRAGASGYLLKDSPASEIIRGIVAVLAGQTFFSEGLAARMIQASAGAGPLERLTPR 169 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L +G +S++IA GLSV TV + + KL + + I A+ Sbjct: 170 ERDILDALAEGLSSKQIALHNGLSVRTVETHRLNLKRKLGIEGQAELIKFAVEH 223 >gi|167033376|ref|YP_001668607.1| two component LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166859864|gb|ABY98271.1| two component transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 209 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 106 VRLEGGLLPFAGIA----FPVRLGFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVI 157 +R G +LP ++ P+ + K G F ++ L+L + H A + Sbjct: 68 MRERGLMLPVIFVSGHADVPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALEHAARARQG 127 Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L L + R LT RE G ++ EIAE+LG+SV TV+ Y G +L Sbjct: 128 DQALALVQVR---IDGLTPRERDVFVPLVQGLSNREIAEQLGISVKTVDLYRGRVMKRLQ 184 Query: 218 AVNRIQAIAKAIRFG 232 A + + + AI G Sbjct: 185 AASLAELVGMAIACG 199 >gi|78484154|dbj|BAE47185.1| response-regulator protein [Streptomyces sp. AJ9463] Length = 216 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L GDG ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 155 DVLTRREREVLGCLGDGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQEL 214 Query: 232 GY 233 G Sbjct: 215 GI 216 >gi|296268892|ref|YP_003651524.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091679|gb|ADG87631.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 197 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKK 166 + L A + + + + E + V L + Sbjct: 65 VAERLTGRAILILTSFGRPGYLRRALAAGVRGFIPKDAPAEQLAEAIRKVHAGGRYLDPE 124 Query: 167 RSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ A LT+RE L+LA +G T EIA + LS TV YL +A KL A NR Sbjct: 125 LAALAMTAGDCPLTQRERDALKLAAEGATVAEIAAAIHLSEGTVRNYLSNAITKLGAGNR 184 Query: 222 IQAIAKAIRFGYI 234 I AI A G+I Sbjct: 185 ITAIRVAREMGWI 197 >gi|294147003|ref|YP_003559669.1| putative response regulator [Sphingobium japonicum UT26S] gi|292677420|dbj|BAI98937.1| putative response regulator [Sphingobium japonicum UT26S] Length = 258 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + +LT ++ + L G +++IA LG+S+ T+ A++ + KL ++R Q Sbjct: 186 EDEIARRIDSLTPQQKTVLAHLVRGRLNKQIAHDLGVSMTTIKAHVSAILQKLGVLSRTQ 245 Query: 224 AIAKA 228 A+ KA Sbjct: 246 AVIKA 250 >gi|284044064|ref|YP_003394404.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948285|gb|ADB51029.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 981 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Query: 151 GACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + L ++ ++ A +L+ERE L G T+ EIA L +S TV Sbjct: 874 LLRPHAVRELRGLGRRVAAPAVGTGVPSLSEREREIAALVAAGGTNREIAAALVVSPRTV 933 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ + KL +R + +A AI G Sbjct: 934 ETHVRNLVRKLGVADRTE-VAAAIGAG 959 >gi|226306044|ref|YP_002766004.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226185161|dbj|BAH33265.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 285 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + + ++ + G ++ S A LT RE L Sbjct: 179 RGVHAELRSVAQTVTDTDLQTKLRGLSQRLANLLRPTADAESDVA--LTPREVDVLSQVA 236 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E ++L L TV +YL SA KLDA +R +A+ A R G + Sbjct: 237 LGCTNIEAGQRLSLRPETVKSYLRSAMGKLDASSRHEAVVTARRLGLL 284 >gi|163852797|ref|YP_001640840.1| response regulator receiver [Methylobacterium extorquens PA1] gi|163664402|gb|ABY31769.1| response regulator receiver [Methylobacterium extorquens PA1] Length = 300 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 + + + F I + L ++ +T RE Sbjct: 194 LTLTDAQGRIHTLSFIGRTGPE-----ILLRLSGDPAAAGLERLRERL-----PITGREA 243 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G +S +I E LGLS TV +L KL NR A A A R Sbjct: 244 EVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295 >gi|318057614|ref|ZP_07976337.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079841|ref|ZP_07987173.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 215 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 49/192 (25%), Gaps = 31/192 (16%) Query: 67 ILIETYGDDFLFHFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L+ + + LL + E + + PV G Sbjct: 10 RLVVADDNPVVRAGLRALLEGRADAVVVAEAADGRQALAATERHRPDGVLLDLRMPVVDG 69 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------------------VITDFLELFKK 166 + + L++ E H + + Sbjct: 70 LTVLPRLARLAPVLVITYGRDAELHARARRLGAAGCLVHGDFTVPQLVGAVRHLRAGAPA 129 Query: 167 RSSAAR-----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ L+ RE + L G + +IA ++ TV ++ K Sbjct: 130 LPPPSQKQSPVRPSWGGPLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAK 189 Query: 216 LDAVNRIQAIAK 227 L R +AIA+ Sbjct: 190 LQTTTRSEAIAR 201 >gi|311898395|dbj|BAJ30803.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 34/119 (28%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG A + V + A Sbjct: 93 LRAGAAGFLLKDLEAEALVDGVRTVARGDGMLAPSVTRRLISSFARPGAPDPVGPGALDG 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E L G G ++ EIA +L + T ++ KL +R+QA A G Sbjct: 153 LTPKEREVLGCLGAGLSNAEIALRLRTAEATTKTHVSRILAKLGLRSRVQAAILAQELG 211 >gi|311103769|ref|YP_003976622.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758458|gb|ADP13907.1| bacterial regulatory protein, LuxR family protein 3 [Achromobacter xylosoxidans A8] Length = 142 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +LT RE + G ++ IA LG+S+ TV A+ KL Sbjct: 1 MQAPRPDLEAVLSSLTPRERQIVTYVAAGRPNKVIAIDLGISLRTVEAHRSRIFTKLQVR 60 Query: 220 NRIQAIAKAIRFG 232 N +Q + G Sbjct: 61 NAMQLACRLCEHG 73 >gi|158318246|ref|YP_001510754.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113651|gb|ABW15848.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 215 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE + L G G +++EIA +L +S T ++ VKL A +R Q A + G Sbjct: 153 SLTVREREVMGLVGLGLSNDEIAARLVISPATARTHVSRVMVKLSARDRAQLAVLANQAG 212 Query: 233 Y 233 Sbjct: 213 L 213 >gi|114563168|ref|YP_750681.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114334461|gb|ABI71843.1| two component transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 197 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L L +G T++++A++L LS+ T+ + KL N + Sbjct: 139 LTEREIQVLHLLIEGKTNKQMADELYLSLRTIEVHRSKIIKKLAVHNAAELAKF 192 >gi|124268769|ref|YP_001022773.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261544|gb|ABM96538.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 306 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 25/51 (49%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A LT RET L G T+ +I + LG+S TVN +L KL R Sbjct: 242 AAALTPRETEVLSWLAKGKTNRDIGDILGVSPRTVNKHLEHIFEKLGVETR 292 >gi|329296608|ref|ZP_08253944.1| response regulator [Plautia stali symbiont] Length = 219 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Query: 126 FHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERET 179 GY+ S+ ++ A + IT + L + A + L+ERE Sbjct: 96 AGAAGYLSKGAASQEVVSAIRSVHAGQRYIASDITQQMALSQIEPQRAESPFSCLSEREL 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + G EI+E+L LS TVN+Y KL+ ++ AIR G Sbjct: 156 QIMLMITRGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 209 >gi|329926657|ref|ZP_08281068.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939066|gb|EGG35431.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 216 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 6/107 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERE 178 G FTS ++ + I + L + + + NLT RE Sbjct: 99 GASGYLLKDFTSHKIIASIREAIRGELMLPSKVAAKLAARLRTTGVPQIPVQNYNLTPRE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L + + EIA+ L ++ TV Y+ K+ +R +AI Sbjct: 159 LQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205 >gi|325002840|ref|ZP_08123952.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 212 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE L G G ++ E++ +L +S T ++ KL +R Sbjct: 140 APRPGSVPGLGALTARERDVLAGLGRGLSNAELSAELVISEGTTKTHVSRVLAKLGLRSR 199 Query: 222 IQAIAKAIRFGYI 234 QA A G + Sbjct: 200 TQAAIAAQDAGLV 212 >gi|296101085|ref|YP_003611231.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055544|gb|ADF60282.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 201 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175 P+ + K G F ++ + + +I+A + ++ + K+ + +LT Sbjct: 81 TIPMSVRAIKGGAYEFLTK--PVESAALIDAIESALRLAENNAVRNKEHYALKQRHMSLT 138 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE LQLA G +++IA +LG+S TV + K+ + + + R Sbjct: 139 PREHEVLQLAISGLLNKQIAAELGVSEITVKVHRRRVMEKMQVRSVAELVRVVERL 194 >gi|291451544|ref|ZP_06590934.1| two-component system response regulator [Streptomyces albus J1074] gi|291354493|gb|EFE81395.1| two-component system response regulator [Streptomyces albus J1074] Length = 238 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA L+ RE ++L G ++++IA +S TV ++ KL A NR AIA Sbjct: 168 AAHGLSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 224 >gi|315505170|ref|YP_004084057.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411789|gb|ADU09906.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 256 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L L+ RE L +G ++ +IA +L L+ TV +L + KL AV+R Sbjct: 157 SLDHVYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSR 216 Query: 222 IQAIAKAIRFGYI 234 I A+ KA+ I Sbjct: 217 IDAVNKAVAASII 229 >gi|323529151|ref|YP_004231303.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386153|gb|ADX58243.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 212 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+++E LQ+ G +++ I + L +S TV+++ KL + ++ I A R Sbjct: 150 LSDKELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMHKLGVKSLVELIDLARR 206 >gi|227547991|ref|ZP_03978040.1| regulatory family protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079936|gb|EEI17899.1| regulatory family protein [Corynebacterium lipophiloflavum DSM 44291] Length = 279 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 43/125 (34%), Gaps = 14/125 (11%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELF----------KKR 167 +R G E + H +V + L R Sbjct: 152 LRHTDGGKGAAKAGRVMNSAEWEQVRSTHSKLRMLANRVTDEELRRDLEQLCDQMVSPVR 211 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE L G+T+ E AE++G+ TV +YL S KL A R +A+ Sbjct: 212 IKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNA 271 Query: 228 AIRFG 232 A R G Sbjct: 272 ARRIG 276 >gi|148557095|ref|YP_001264677.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148502285|gb|ABQ70539.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 855 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + L+L S ++ LT+RE L DG +++ IA +L L+ +TV +L + Sbjct: 778 ARHLEKILQLISASSHPSQ-LTDREAEILAHLADGVSNKLIARRLALTENTVKFHLKNIF 836 Query: 214 VKLDAVNRIQAIAKAIR 230 KL +R +A A A R Sbjct: 837 AKLGVASRKEAAACAFR 853 >gi|161520287|ref|YP_001583714.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353535|ref|YP_001949162.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344337|gb|ABX17422.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337557|dbj|BAG46626.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 277 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 12/220 (5%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 H +I L+ +L D Sbjct: 57 HARLRQIGFSTLGYGAYEMIGRRILCAHLLRDL--APPSFMQPYIEGALYESDPRFAQVR 114 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVIFTSE 137 P+ W+ + E + G V G L +G+ F + + + Sbjct: 115 QSGFPVAWRLDEIEAAAQRGGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAVNLTS 174 Query: 138 FLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191 + + VI A V L + R + R L + + L+ G + Sbjct: 175 ETHGTDWIDDRVIGGALAVSLAVHRVALPFLEARVARMRGFALGDEQQQVLERLVHGLSD 234 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +EIA L S+H V ++ S + NR Q A R Sbjct: 235 QEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274 >gi|37525945|ref|NP_929289.1| response regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785374|emb|CAE14321.1| Transcription regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 221 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 ++ ++ + L++RE + + G +I+E+L LS TVN+Y KL+ Sbjct: 133 MALSQISPQQDNPLSCLSDRELQIMLMITKGQKVSDISEQLNLSPKTVNSYRYRMFSKLN 192 Query: 218 AVNRIQAIAKAIRFGY 233 ++ AIR+G Sbjct: 193 INGDVELTHMAIRYGL 208 >gi|119776315|ref|YP_929055.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768815|gb|ABM01386.1| two component transcriptional regulator, LuxR family [Shewanella amazonensis SB2B] Length = 191 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 8/151 (5%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 +P + + ++ L + G P+ L + G F + + Sbjct: 49 ILDSRMPGLSGEALQHELVNQQSPLGIIFLTGHGD-----LPMALAAFREGACDFFQKPV 103 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 A + +A E+ R A L+ERE+ L+L DG T+++I+E L Sbjct: 104 QAAP--LCDAIDKAEAESQRRYEVAGLRLKLA-RLSERESQVLRLLTDGLTNKQISETLY 160 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LS+ T+ + S KL N + A R Sbjct: 161 LSLRTIEVHRASMMKKLGVHNLAELGRFACR 191 >gi|328951348|ref|YP_004368683.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451672|gb|AEB12573.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 217 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 30/56 (53%) Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E LQL G +++EIA+ LGLS TV L KL A NR QA A+R G Sbjct: 156 ELEILQLLAQGCSNQEIADALGLSEKTVRNRLSEVFAKLGAQNRTQAALFAVRAGI 211 >gi|327480105|gb|AEA83415.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri DSM 4166] Length = 222 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN-----------LTERETSCLQLAGDGYTSEE 193 + AH + + + + LT RE L G T+ + Sbjct: 122 ARVAAHLRTARALQNARRNATQAPPVDEKQIQAMLSQRFQLTGREVEVLHWVSCGKTNRD 181 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 I + LGLS TVN +L VKL R Sbjct: 182 IGDILGLSPRTVNKHLEHVYVKLGVETRT 210 >gi|330818886|ref|YP_004351103.1| Transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] gi|327374428|gb|AEA65780.1| Transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] Length = 247 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 12/226 (5%) Query: 16 ELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 L+ + I + + Y + P + L D + D Sbjct: 26 ALAQTVQAIAAELG--GYDYLYIQHRRGCEPDQMNQHQYLIGCDPQWPQVYLDKKWYVND 83 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH-KNGYVI 133 L + +I+ ET + + R E + + PV G + Sbjct: 84 PDLMWALRESQVTVASNIKAETEGQRN---MRRFEQAHGFRSKLIVPVHSPGSKMVGVLY 140 Query: 134 FTSEFLMLANEVIIEAHGA-----CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + E ++ H +++ F ++ + +LT++E + L Sbjct: 141 VGTPDAPEIGEPLLLQHRIEWRSLAAELLDWFEHAYRTAETRDIDLTQKEVTILNFLKHD 200 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y + IA +L +SV TV++Y K + A+ A+ G + Sbjct: 201 YAAPAIAHELNVSVPTVHSYYKKLNQKFKVQHISLAVKIALHLGIL 246 >gi|313674425|ref|YP_004052421.1| two component transcriptional regulator, luxr family [Marivirga tractuosa DSM 4126] gi|312941123|gb|ADR20313.1| two component transcriptional regulator, LuxR family [Marivirga tractuosa DSM 4126] Length = 196 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 T RE ++L G +S EIAE L +S TV+ + + K + + I Sbjct: 141 TSREIEIIKLLAAGKSSSEIAEILFISPQTVSKHRSNILKKSGCKSSTELIH 192 >gi|306844463|ref|ZP_07477053.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1] gi|306275276|gb|EFM57026.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1] Length = 245 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229 >gi|282856682|ref|ZP_06265948.1| two-component response regulator [Pyramidobacter piscolens W5455] gi|282585447|gb|EFB90749.1| two-component response regulator [Pyramidobacter piscolens W5455] Length = 203 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L DG + EIAE+L +++++V + + K + + A+ G Sbjct: 138 ELTRREREVLTLICDGLSRREIAERLNITINSVKTHFSNILSKTGYESVAKLAIFAVSNG 197 Query: 233 YI 234 +I Sbjct: 198 FI 199 >gi|218516276|ref|ZP_03513116.1| probable two-component response regulator protein [Rhizobium etli 8C-3] Length = 91 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT +++ L + +G +++IA +LG+S T+ A++ + +KLD +R QA+ I Sbjct: 24 RLHTLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAV---I 80 Query: 230 RFGYI 234 + G I Sbjct: 81 QLGKI 85 >gi|320531208|ref|ZP_08032193.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136577|gb|EFW28540.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 223 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++++ +L +TE E + L L +GY++ EIA++L +S TV +++ Sbjct: 149 RLVSQYLRPVPSSRP---GVTEAEQAVLDLLCEGYSNAEIADQLFISEATVKSHVSHLMK 205 Query: 215 KLDAVNRIQAIA 226 K +R++ + Sbjct: 206 KYGVSSRLKLVV 217 >gi|256421934|ref|YP_003122587.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256036842|gb|ACU60386.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 222 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + R + A T+RE ++L +T++EI +K+ LS TV + Sbjct: 137 AAMIVKSRFNPPRENNAVTFTDREKEIIRLICQQFTAQEIGDKIFLSKRTVEGHRTRILE 196 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 K++ N + A++ I Sbjct: 197 KMNVKNTAGVVVFALKNNLI 216 >gi|297559758|ref|YP_003678732.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844206|gb|ADH66226.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 220 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 2/125 (1%) Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 +G V ++ + + + + Sbjct: 93 ALGGGASGFLLKAGDPRELIAGVHAVADGGAYLSPQVARQ--VIARFGGPRAAREAAAVA 150 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE L L G G ++ +IA++L L TV +Y+ + +L+ NR+QA A Sbjct: 151 RVEELTQREREVLALVGAGLSNADIADRLFLVEGTVKSYVSAILNRLEMRNRVQAAILAH 210 Query: 230 RFGYI 234 G + Sbjct: 211 EAGLV 215 >gi|170698172|ref|ZP_02889251.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170136937|gb|EDT05186.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 204 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE + L G++++EIA+ L +S TV+ + K N + A Sbjct: 140 AAALSPREITVLSYLVKGHSNQEIADLLHVSHKTVSTHKAHIFQKTGITNIVDLAEFARE 199 Query: 231 F 231 Sbjct: 200 N 200 >gi|3822034|gb|AAC82663.1| GacA-like protein [Vibrio cholerae O395] Length = 214 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS +TVN+Y KL+ Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPNTVNSYRYRLFAKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGIL 209 >gi|17988034|ref|NP_540668.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|62289171|ref|YP_220964.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|17983780|gb|AAL52932.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|62195303|gb|AAX73603.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] Length = 230 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + Sbjct: 162 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 214 >gi|27382083|ref|NP_773612.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355253|dbj|BAC52237.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +I + + R S LT RE L G ++ IA KLGLS TV ++ Sbjct: 167 AYLINEGARVAIDRRSVTD-LTPREQQVLAELELGLPNKLIAAKLGLSESTVKMHIQHIM 225 Query: 214 VKLDAVNRIQAIAK 227 K A NR +A+ + Sbjct: 226 RKCAAHNRTEAVLR 239 >gi|311898017|dbj|BAJ30425.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 104 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE L G G ++ EIA++L +S TV A+L +K A R +A A Sbjct: 29 AYEELTAREREVFDLLGKGLSNAEIADRLVVSGSTVKAHLARILIKTGAETRTRAALMAQ 88 Query: 230 RF 231 R Sbjct: 89 RL 90 >gi|297155312|gb|ADI05024.1| response regulator [Streptomyces bingchenggensis BCW-1] Length = 164 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 4/106 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + L ++I + + R LT RET L+L +G Sbjct: 62 QAVLAASRGDGDLPTDLIGQLVSQ----VGALRPGAVGRLGVPLGLTPRETDVLRLVAEG 117 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA KL S TV + T +L NR A+A A+R GYI Sbjct: 118 MGTGEIAVKLAYSERTVKNVIQGLTTRLGLRNRAHAVAYALREGYI 163 >gi|325673304|ref|ZP_08152996.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555894|gb|EGD25564.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 878 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 9/114 (7%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P + ++ S + + + A L + + A LT RE Sbjct: 774 PFHDMAPASLELLTASRGRFGSRDRFADEVWAS---------LPRTVVATAEKLTRRELQ 824 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L T+EEIA L +SV+TV +L KL R A+ A G + Sbjct: 825 LLAELPTWRTAEEIAADLCVSVNTVKTHLRGIYRKLGVTTRRDAVTAAHTHGLL 878 >gi|325674370|ref|ZP_08154059.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555050|gb|EGD24723.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 780 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 17/180 (9%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + + L D + + L + W + E + + G + Sbjct: 598 ELLEAGLRLTRQTRDPLM--VFTCLQALAW--LDAENGQVRRAAVVMGAADAHRRLVG-S 652 Query: 120 FPVRLGF-----------HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 PV + T + + A Y + E Sbjct: 653 NPVFFPNLLVHQNTYEETVREALDAKTLDAAHREGASMTTADAIAYTLGEQSREPMPDTP 712 Query: 169 SAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 R LT+RE +L +G T++EIA++L +S TV+ ++ KL +R+Q Sbjct: 713 GQERTVLTKREHEVAELVAEGLTNKEIAQRLTISRRTVDGHVDHILTKLGFTSRVQVATW 772 >gi|297543959|ref|YP_003676261.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841734|gb|ADH60250.1| transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 129 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLT 175 IA P+ + GY+ ++ +A+E++ Y+++ ++ E+ + LT Sbjct: 10 CIAMPLDIDNDIVGYLDISTIKHNMADEMMGFIDLLVYKIVNEYKREMDLESQEDLEKLT 69 Query: 176 ERETSCLQLAGDGYTSEEIA--EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++ ++ +GY +EIA +LG+ TV + KL N QAIAKAI+ Sbjct: 70 DKQIEIIKKCANGY--KEIAISRELGIKPETVKYHKKEIVRKLRVKNFQQAIAKAIKLNL 127 Query: 234 I 234 I Sbjct: 128 I 128 >gi|124003337|ref|ZP_01688187.1| transcriptional regulator, LuxR family [Microscilla marina ATCC 23134] gi|123991435|gb|EAY30866.1| transcriptional regulator, LuxR family [Microscilla marina ATCC 23134] Length = 219 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +I E K + + LT+RE L L G G T++EI+++L ++ TV + + K Sbjct: 140 LIKSIQESKKAKPNPQVKLTKREKEVLALIGKGMTTKEISKQLFIADTTVETHRRNLIDK 199 Query: 216 LDAVNRIQAIAK 227 L+ N + I Sbjct: 200 LEVKNSKELILY 211 >gi|86358918|ref|YP_470810.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86283020|gb|ABC92083.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 305 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 7/107 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + + + + +E + A + + L LT+RE+ Sbjct: 199 ISITHAGQAALQLAFLGSIGPDEYLFRLTAASQRSDDEMLRQRF-------ALTQRESEV 251 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L G + +I E LGLS TVN +L VKL NR A KA Sbjct: 252 LLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|332525112|ref|ZP_08401290.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332108399|gb|EGJ09623.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 207 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q + E + + A LT RE+ L+ G +++IA+ LG+S+ TV A+ + Sbjct: 126 ARQAFSQHQEQASRDALLA-RLTTRESQVLERIVAGRLNKQIADDLGISIKTVEAHRANI 184 Query: 213 TVKLDAVNRIQAIAKAI 229 KL+A + A+ Sbjct: 185 MEKLNANTVADLLKIAL 201 >gi|307947515|ref|ZP_07662848.1| two component LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307769333|gb|EFO28561.1| two component LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 236 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+ DG +++E A +L LSV TV + + K A + A R Sbjct: 154 GLTTRETEILRFVADGMSNKETANRLNLSVRTVETHRLNIRRKTKAYTLSDLVRVARRLR 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|282863125|ref|ZP_06272185.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562107|gb|EFB67649.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 886 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 41/121 (33%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 + G + + T+ L + A ++ Sbjct: 750 PMLPYRARAHLLYGEWLRRQGRRQDCRPHLRTAHELFSGAGLEAFGRRAADELRATGETA 809 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A LT +E +L G TS+E+A +L LS TV+ +L + KL +R Q Sbjct: 810 RSRTGHARDQLTMQELHIARLVATGATSKEVAARLFLSPRTVDTHLRNIYRKLGINSRRQ 869 Query: 224 A 224 Sbjct: 870 L 870 >gi|153826582|ref|ZP_01979249.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|149739674|gb|EDM53888.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] Length = 267 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 51/232 (21%), Gaps = 31/232 (13%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICE--LHNYDLDSGDIPNILIETYGDDF 76 RL + I P + + L D F Sbjct: 27 SRLVAVLRCIA----DFDCAVILGYRPDKHPIYLYDSLSAQRELLFQRYLTHAYLD-DPF 81 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-T 135 ++ + + ++ V L + V Sbjct: 82 YSALQHNTRSGVFHLSDLMPLNPQQTAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGC 141 Query: 136 SEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------AR 172 + E I L L + + A+ Sbjct: 142 FKPRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQ 201 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ RE L G S+EIAE L +S TV + +L + + Sbjct: 202 RLSPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 253 >gi|15641657|ref|NP_231289.1| response regulator VieA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590827|ref|ZP_01678153.1| response regulator VieA [Vibrio cholerae 2740-80] gi|121727322|ref|ZP_01680469.1| response regulator VieA [Vibrio cholerae V52] gi|153819787|ref|ZP_01972454.1| response regulator VieA [Vibrio cholerae NCTC 8457] gi|153823165|ref|ZP_01975832.1| response regulator VieA [Vibrio cholerae B33] gi|227081804|ref|YP_002810355.1| response regulator VieA [Vibrio cholerae M66-2] gi|298498266|ref|ZP_07008073.1| response regulator VieA [Vibrio cholerae MAK 757] gi|3123891|gb|AAC38449.1| response regulator [Vibrio cholerae] gi|9656166|gb|AAF94803.1| response regulator VieA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547317|gb|EAX57435.1| response regulator VieA [Vibrio cholerae 2740-80] gi|121630328|gb|EAX62725.1| response regulator VieA [Vibrio cholerae V52] gi|126509666|gb|EAZ72260.1| response regulator VieA [Vibrio cholerae NCTC 8457] gi|126519326|gb|EAZ76549.1| response regulator VieA [Vibrio cholerae B33] gi|227009692|gb|ACP05904.1| response regulator VieA [Vibrio cholerae M66-2] gi|297542599|gb|EFH78649.1| response regulator VieA [Vibrio cholerae MAK 757] Length = 584 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%) Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + G + G V+ + + ++ ++++A + + EL + Sbjct: 469 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 526 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + ++ +G T++EIA +L ++ TV+ Y KL + ++ + Sbjct: 527 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 580 >gi|300789965|ref|YP_003770256.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299799479|gb|ADJ49854.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 935 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 9/94 (9%) Query: 147 IEAHGACYQVITDFLELFKKRSSAA---------RNLTERETSCLQLAGDGYTSEEIAEK 197 + AH ++ F +R +LT ET L +G ++ +IA + Sbjct: 838 LGAHWDVARLRARFRAFGIRRGPTVKHRQATHGWDSLTPTETKIAGLVLEGLSNPQIATR 897 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L LS TV ++ KL +RI +A R Sbjct: 898 LFLSPRTVATHVSHILAKLGVHSRIDIAREATRN 931 >gi|302545604|ref|ZP_07297946.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302463222|gb|EFL26315.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 231 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 39/86 (45%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A + ++++ R LT RE L L +G ++ +I ++ L V TV + Sbjct: 136 ASRTLLHSHPGTEAVVDEKAARVRLLTARERDVLVLVAEGLSNADIGARIHLGVGTVKDH 195 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL +R+QA A R G + Sbjct: 196 VSAMLTKLRVTSRVQAALLAQRAGLL 221 >gi|226362567|ref|YP_002780345.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226241052|dbj|BAH51400.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 773 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 6/105 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+ + L + A + + + +LT RE +L Sbjct: 671 GDRGFESEFRQGLGTRFDE------AAAYALEETGPSDGPAEPGSTSLTRREQQVAELVA 724 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +G T++ IA +L +S T ++ KL +R Q A +I Sbjct: 725 EGLTNKAIAARLVISQRTAQGHVEHILSKLGFNSRAQIAAWSIEQ 769 >gi|37913119|gb|AAR05381.1| probable two-component response regulator [Aeromonas hydrophila] Length = 207 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 36/79 (45%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + R+ L++RE S L L G+T++ IAE + LS TV+ Y K Sbjct: 129 IAGARHAHEVDRADLLSTLSDREMSVLLLICQGHTNKHIAENMLLSEKTVSTYKTRLMQK 188 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L+ N + I+ A R + Sbjct: 189 LNVTNMVDLISLARRQELL 207 >gi|73539297|ref|YP_299664.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] gi|72122634|gb|AAZ64820.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] Length = 911 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +E L L G +++ IA L +S +TV +L K NR A+++A++ G + Sbjct: 850 SAKEMQVLALLASGQSNKAIARGLDVSENTVKFHLKQIFQKFGVDNRAGAVSQAMQQGLL 909 >gi|256379381|ref|YP_003103041.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923684|gb|ACU39195.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 213 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + L +++ + ++ + L + ++ RET L+L DGY + EI Sbjct: 117 AAGEGALPPDLLGKLLNRVSRLQRNVLHPNGWTMA---GMSNRETEVLRLIADGYETREI 173 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE+L S TV + L T + NR A+A A+R G I Sbjct: 174 AERLCYSQRTVKSILHDITNRFGLRNRAHAVAYALREGLI 213 >gi|218675092|ref|ZP_03524761.1| LuxR family transcriptional regulator [Rhizobium etli GR56] Length = 81 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D +R+ A +T RE + G T+ EI L +S TVN ++ +A KL Sbjct: 4 DDAARADHRRAGAMSAVTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLG 63 Query: 218 AVNRIQAIAKAIRFGYI 234 +A A+R G I Sbjct: 64 VFKETALVAAALRNGII 80 >gi|145594124|ref|YP_001158421.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303461|gb|ABP54043.1| response regulator receiver [Salinispora tropica CNB-440] Length = 212 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ ++ ++LT++E L+ +G T+ EIA K+ L+ TV Y+ Sbjct: 128 AITTRVLERIRSGVEQ-PRELKSLTDQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVS 186 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 S KL R QA A R Sbjct: 187 SMLAKLGLERRTQAAVLATRL 207 >gi|297159387|gb|ADI09099.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 2/127 (1%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G V + + + A ++ + L Sbjct: 96 ARALGGGATGFLLKAGDPHELIAGVRAVAGGAAFLSPKV--ARHVITELGGERLTRGAAA 153 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L L G G ++ EIA +L L TV Y+ + +L+ NR+QA Sbjct: 154 RARTDVLTAREREVLALVGAGLSNAEIARRLHLVEGTVKGYVSAVLDRLEVGNRVQAAIV 213 Query: 228 AIRFGYI 234 A G + Sbjct: 214 AYEAGLV 220 >gi|255744920|ref|ZP_05418870.1| response regulator VieA [Vibrio cholera CIRS 101] gi|255737391|gb|EET92786.1| response regulator VieA [Vibrio cholera CIRS 101] Length = 581 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%) Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + G + G V+ + + ++ ++++A + + EL + Sbjct: 466 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 523 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + ++ +G T++EIA +L ++ TV+ Y KL + ++ + Sbjct: 524 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 577 >gi|239816035|ref|YP_002944945.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802612|gb|ACS19679.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 215 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 13/145 (8%) Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD--- 159 + RL +A V+ LA +A A + + Sbjct: 69 EALRRLLAHDPKARVLALSAHEDTIHPRRVLRAGALGYLAKRSAPDALIAAVKAVARGDR 128 Query: 160 ----------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + ++ A L+ERE S G T +IA L LS+ TV ++L Sbjct: 129 YIDANTAQALATAQIEGEANPADLLSEREFSVFIQLARGMTVAQIASTLNLSLSTVGSHL 188 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL A N+ + A+R+G I Sbjct: 189 YRVKQKLGATNQAELTWVALRWGLI 213 >gi|192361195|ref|YP_001981681.1| response regulator receiver domain-containing protein [Cellvibrio japonicus Ueda107] gi|190687360|gb|ACE85038.1| Response regulator receiver domain protein [Cellvibrio japonicus Ueda107] Length = 209 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E I A ++ L +++ A LT +E LQ G +S+EIA LGLSV Sbjct: 118 EKIQAALTLSRELHQQRQALATRQARLA-LLTPKEQEILQGILQGLSSKEIAAGLGLSVR 176 Query: 204 TVNAYLGSATVKLDAVNRIQAIA 226 TV + KL + I+ + Sbjct: 177 TVENHRARLMDKLHVKSAIELMR 199 >gi|91788536|ref|YP_549488.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91697761|gb|ABE44590.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 208 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 4/136 (2%) Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 ++ ++E L + G ++ G F E L+ E ++E Sbjct: 70 QDRLVERKSPLPIVFITGHGDVPMAVNTMKKGAMDFIQKPFQEEALVNLVERMLEQAKEA 129 Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + R + LT RE L+ G +++IA+ LG+S+ TV A+ + Sbjct: 130 FAGHQQ----SASRDALLAKLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIM 185 Query: 214 VKLDAVNRIQAIAKAI 229 KL+A + A+ Sbjct: 186 EKLNANTVADLLKIAL 201 >gi|78100993|pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From Pseudomonas Fluorescens gi|78101079|pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr gi|59580654|gb|AAC06272.2| response regulatory protein [Pseudomonas fluorescens] Length = 208 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 5/111 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176 P+ + K G + F + + +++A Q+ + + + + + +LT Sbjct: 88 IPMTVRAMKAGAIEFLPK--PFEEQALLDAIEQGLQLNAERRQARETQDQLEQLFSSLTG 145 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE LQL G +++IA +LG++ TV + + KL+ + + Sbjct: 146 REQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHL 196 >gi|298248569|ref|ZP_06972374.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551228|gb|EFH85094.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1048 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + R L+ +E L+L G T+++IA+ L +SV+TV ++ KL R+ Sbjct: 977 VSAPRHLLVEPLSAQEQRVLRLLVSGRTNQQIAQALVVSVNTVKHHVKRLYSKLGVSTRL 1036 Query: 223 QAIAKAIRFGYI 234 +A A + Sbjct: 1037 EASEAARHLKLL 1048 >gi|239979679|ref|ZP_04702203.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 281 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA L+ RE ++L G ++++IA +S TV ++ KL A NR AIA Sbjct: 211 AAHGLSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 267 >gi|226361838|ref|YP_002779616.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240323|dbj|BAH50671.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 759 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 30/62 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LT RE L DG T+ EIA KL +S TV+A++ KL +R Q + Sbjct: 690 KESGTRAGLTRREQQIAALVADGLTNREIATKLVISQRTVDAHVEHILTKLGFRSRTQIV 749 Query: 226 AK 227 Sbjct: 750 RW 751 >gi|35186966|gb|AAQ84141.1| PlmR3 [Streptomyces sp. HK803] Length = 213 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 36/84 (42%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 QV E+ R A ++ RE L+L +G EIA KL S TV L Sbjct: 130 ALMEQVRWTHREVLAPRGLTASGVSPRELDVLRLVSEGKELAEIAAKLCYSERTVKYILH 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +L NR A++ AIR G I Sbjct: 190 GLMKRLQLRNRSHAVSYAIRAGLI 213 >gi|327190926|gb|EGE57980.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 305 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + + + + +E + A + + L +LT+RE+ Sbjct: 199 ISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRF-------SLTQRESEV 251 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L G + +I E LGLS TVN +L VKL NR A KA Sbjct: 252 LLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|325290812|ref|YP_004266993.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324966213|gb|ADY56992.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 226 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T RE +L G ++EIA LG+ TV+ ++ + KL R++A+ K Sbjct: 168 TSREVEVARLMNKGLQNKEIAAALGIKKRTVDLHIRNIQKKLKVTTRLEAVVK 220 >gi|302522529|ref|ZP_07274871.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302431424|gb|EFL03240.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 219 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215 Query: 232 GYI 234 G I Sbjct: 216 GII 218 >gi|258510658|ref|YP_003184092.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477384|gb|ACV57703.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 200 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Query: 147 IEAHGAC----YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + AH +V L + + L+ RE L+LA G T+ ++A++L LS Sbjct: 111 LAAHLRSIMTGQRVFDPALMMAAMET--DNPLSAREIDVLRLAKRGLTTRQMAKELFLSE 168 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV YL A KL R +AI KA G++ Sbjct: 169 GTVRNYLSGALAKLGCATRQEAIRKADDMGWL 200 >gi|118722505|gb|ABL09961.1| regulator [Streptomyces echinatus] Length = 202 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +VI L L S A LT RET L+ A +G + ++A+ LS TV +L S Sbjct: 122 QRVIAPGLMLAA-WESRANPLTPRETEILRWASEGGSVRDVADAARLSPGTVRNHLSSIV 180 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL A +R+ A+ A G++ Sbjct: 181 TKLGARSRLDAVRIAQDAGWL 201 >gi|26989384|ref|NP_744809.1| LuxR family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24984245|gb|AAN68273.1|AE016461_9 DNA-binding response regulator AgmR [Pseudomonas putida KT2440] Length = 221 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ++ L+ G ++++IA L ++ TV A++ + KL+ NR+QAI A Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210 >gi|27380392|ref|NP_771921.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27353556|dbj|BAC50546.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 220 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 48/125 (38%), Gaps = 5/125 (4%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV----ITDFLELFKKRSS 169 AG A + GYV TS L V+ G L SS Sbjct: 89 QNAGFAVQA-IRAGARGYVTKTSPPETLVRAVMDVLAGRIAISPDIDHELALSRISGESS 147 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LT RE L+L ++EEIAE L +S TV KL + I+ + A+ Sbjct: 148 AADVLTPREFEVLRLLLAEESTEEIAETLHVSPKTVANLHSLIKDKLGVDSDIELVRLAL 207 Query: 230 RFGYI 234 R G + Sbjct: 208 RQGLL 212 >gi|94309035|ref|YP_582245.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93352887|gb|ABF06976.1| response regulator, NarL-family [Cupriavidus metallidurans CH34] Length = 210 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R L+ERE G + IA++L LSV TV+ Y K+ A Sbjct: 144 PVHRTLSEREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYA 203 Query: 229 IRFGYI 234 I+ G + Sbjct: 204 IKNGLV 209 >gi|288917724|ref|ZP_06412087.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350939|gb|EFC85153.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 250 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++ + A +LG+S TV ++ + KL NR++ A+R Sbjct: 185 PRLTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLAKLQLRNRVELTRFALRE 244 Query: 232 GY 233 GY Sbjct: 245 GY 246 >gi|262169664|ref|ZP_06037355.1| response regulator VieA [Vibrio cholerae RC27] gi|262021898|gb|EEY40608.1| response regulator VieA [Vibrio cholerae RC27] Length = 555 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%) Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + G + G V+ + + ++ ++++A + + EL + Sbjct: 440 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 497 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + ++ +G T++EIA +L ++ TV+ Y KL + ++ + Sbjct: 498 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 551 >gi|238797855|ref|ZP_04641347.1| two-component response regulator [Yersinia mollaretii ATCC 43969] gi|238718271|gb|EEQ10095.1| two-component response regulator [Yersinia mollaretii ATCC 43969] Length = 180 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196 + +V+IE + L +++ L+ RE + L G TS++IA Sbjct: 80 PIDADVLIETVSLALEQHEQALATHRQQIGYQQLLSQLSAREREVVALIIQGETSKQIAH 139 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L LS TV A+ + KL+ + I Sbjct: 140 ILSLSPRTVEAHRANIFAKLEVSSLALLIHY 170 >gi|15641226|ref|NP_230858.1| response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121729873|ref|ZP_01682301.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|153803512|ref|ZP_01958098.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|153824227|ref|ZP_01976894.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|153831196|ref|ZP_01983863.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|229505194|ref|ZP_04394704.1| BarA-associated response regulator UvrY [Vibrio cholerae BX 330286] gi|229511136|ref|ZP_04400615.1| BarA-associated response regulator UvrY [Vibrio cholerae B33] gi|229515595|ref|ZP_04405054.1| BarA-associated response regulator UvrY [Vibrio cholerae TMA 21] gi|229518255|ref|ZP_04407699.1| BarA-associated response regulator UvrY [Vibrio cholerae RC9] gi|229521333|ref|ZP_04410752.1| BarA-associated response regulator UvrY [Vibrio cholerae TM 11079-80] gi|229529699|ref|ZP_04419089.1| BarA-associated response regulator UvrY [Vibrio cholerae 12129(1)] gi|229608213|ref|YP_002878861.1| response regulator [Vibrio cholerae MJ-1236] gi|254292120|ref|ZP_04962893.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|9655693|gb|AAF94372.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628382|gb|EAX60882.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|124120948|gb|EAY39691.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|126518250|gb|EAZ75475.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|148873319|gb|EDL71454.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|150421955|gb|EDN13929.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|227013130|gb|ACP09340.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|229333473|gb|EEN98959.1| BarA-associated response regulator UvrY [Vibrio cholerae 12129(1)] gi|229341431|gb|EEO06434.1| BarA-associated response regulator UvrY [Vibrio cholerae TM 11079-80] gi|229344970|gb|EEO09944.1| BarA-associated response regulator UvrY [Vibrio cholerae RC9] gi|229347364|gb|EEO12324.1| BarA-associated response regulator UvrY [Vibrio cholerae TMA 21] gi|229351101|gb|EEO16042.1| BarA-associated response regulator UvrY [Vibrio cholerae B33] gi|229357417|gb|EEO22334.1| BarA-associated response regulator UvrY [Vibrio cholerae BX 330286] gi|229370868|gb|ACQ61291.1| BarA-associated response regulator UvrY [Vibrio cholerae MJ-1236] Length = 214 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGIL 209 >gi|150388882|ref|YP_001318931.1| regulatory protein, LuxR [Alkaliphilus metalliredigens QYMF] gi|149948744|gb|ABR47272.1| regulatory protein, LuxR [Alkaliphilus metalliredigens QYMF] Length = 258 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 4/117 (3%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE----LFKKRSSAAR 172 A P+ + GY+ ++ + E+I Y++I ++ + + K + Sbjct: 134 CFAIPLNVDDEIIGYLDVSTINQKITEEMITITELLPYKIIEEYKKQIKNIEKAFKRESS 193 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT ++ LQL YT +EI ++L +S++TV + S KL+ + +AI KA+ Sbjct: 194 KLTTKQLQILQLMIKSYTEDEIGKELHVSINTVKYHKKSIFSKLNVRSSREAIIKAL 250 >gi|326443616|ref|ZP_08218350.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 1016 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 38/113 (33%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 + G T E + A + + LT RE Sbjct: 897 SAADTARRVGDRPLTEEIALTARGARLALPASASGPDGPHGPAAAPEPGPGLGLTPREED 956 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++ +IA+ L +S T + ++ + KL R +A A A R Sbjct: 957 VLRLVSAGRSNRQIAQTLSISPKTASVHVSNILAKLGVSGRGEAAALAHRLRL 1009 >gi|312137920|ref|YP_004005256.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311887259|emb|CBH46568.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 878 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 9/114 (7%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P + ++ S + + + A L + + A LT RE Sbjct: 774 PFHDMAPASLELLTASRGRFGSRDRFADEVWAS---------LPRTVVATAEKLTRRELQ 824 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L T+EEIA L +SV+TV +L KL R A+ A G + Sbjct: 825 LLAELPTWRTAEEIAADLCVSVNTVKTHLRGIYRKLGVTTRRDAVTAAHTHGLL 878 >gi|284051655|ref|ZP_06381865.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] gi|291566964|dbj|BAI89236.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 52 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 28/50 (56%) Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++EIA+ L +S TV ++ + KLD +R QA+ A++ G + Sbjct: 1 MAKSQSNQEIADALYISPGTVRVHVHAILQKLDVRDRTQAVILAMQNGML 50 >gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 305 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 30/57 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE+ L G ++ +I E LGLS TV +L VKL NR A KA + Sbjct: 244 LTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQ 300 >gi|226326344|ref|ZP_03801862.1| hypothetical protein PROPEN_00192 [Proteus penneri ATCC 35198] gi|225205295|gb|EEG87649.1| hypothetical protein PROPEN_00192 [Proteus penneri ATCC 35198] Length = 60 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 T+RE L G +++IAE L +S TV ++ + KL +R+ A Sbjct: 2 TKRELDVLHEVSAGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAA 51 >gi|209964176|ref|YP_002297091.1| transcriptional regulator, LuxR family protein [Rhodospirillum centenum SW] gi|209957642|gb|ACI98278.1| transcriptional regulator, LuxR family protein [Rhodospirillum centenum SW] Length = 216 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G ++++IA +L ++ TV + + KL NR QA A+ Sbjct: 151 DLLTVREREILSCLLGGGSNKDIASRLNVAESTVKMHFKALLRKLRVQNRTQAAMWALSN 210 Query: 232 GY 233 G Sbjct: 211 GI 212 >gi|90409772|ref|ZP_01217789.1| hypothetical tetrathionate reductase complex: response regulator [Photobacterium profundum 3TCK] gi|90329125|gb|EAS45382.1| hypothetical tetrathionate reductase complex: response regulator [Photobacterium profundum 3TCK] Length = 196 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L GY +++I+++L ++V TV + S KL A + + Sbjct: 135 ETLTTREQDILRLLVKGYKNQQISDELCIAVRTVEVHRSSLMKKLHAKTIAELVMF 190 >gi|333024259|ref|ZP_08452323.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332744111|gb|EGJ74552.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 1006 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 7/126 (5%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G A + PVR + GY E LA + ++ Sbjct: 881 AAGERERAAHVLAPVRETAGRFGYAPLAREAAELARRGRLL-------PASEPPARPALA 933 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE+ L+L G+++ IAE L +S T + ++ KL R +A A Sbjct: 934 PAQTLGLTARESEVLRLVAAGHSNRRIAETLYISPKTASVHVSRIIAKLGVTGRGEAAAV 993 Query: 228 AIRFGY 233 A R Sbjct: 994 AHRLRL 999 >gi|328544835|ref|YP_004304944.1| Two component transcriptional regulator, LuxR family protein [polymorphum gilvum SL003B-26A1] gi|326414577|gb|ADZ71640.1| Two component transcriptional regulator, LuxR family protein [Polymorphum gilvum SL003B-26A1] Length = 201 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 27/76 (35%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A + + + A LT RE L G +++E LG+S TV + Sbjct: 122 AATRARSQTQSDLPGDFAGAEQLTRREREVLSEITSGASNKEAGRSLGISPRTVEVHRAR 181 Query: 212 ATVKLDAVNRIQAIAK 227 KL A N + Sbjct: 182 IMEKLGARNAADLVRI 197 >gi|315502173|ref|YP_004081060.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315408792|gb|ADU06909.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 223 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ L+ERE L G G T+ EI+ +L +SV TV AY+ KLD NR+Q Sbjct: 153 RERAVRLLDGLSEREREVAVLLGRGRTNAEISAELFMSVATVKAYVSRLLTKLDLNNRVQ 212 Query: 224 AIAKAIRFGYI 234 G + Sbjct: 213 VALLVQDAGLV 223 >gi|284045278|ref|YP_003395618.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949499|gb|ADB52243.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 519 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + LT RE L L G ++ E+A +L ++ T ++ K Sbjct: 440 AAAGHRRATARSRARPAGLTARELEVLVLVARGASAREVAGELVIAEKTARNHVECVYGK 499 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R +A A+R G + Sbjct: 500 LGVSSRAEATLYAMRHGLV 518 >gi|238064140|ref|ZP_04608849.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885951|gb|EEP74779.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 557 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 61/210 (29%), Gaps = 28/210 (13%) Query: 20 RLHLIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 L R A+ T S + + Y + E D Sbjct: 369 HLAEAAARSGQEGALRAIVTQLSPVARECGSPALAVALRYAGALLANDAAVFELALD--- 425 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + P +Q + Q LL A F + + Sbjct: 426 --ADLSGWPFERARLQHAYGVWLRRQRRAAESRPLLRSAAATF---DALGAVPWADRSRA 480 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L + E + ++ AA LT +E +LA +G +++EIAE+ Sbjct: 481 ELRASGESL------------------RRSVDAAGVLTPQELQVARLAAEGLSNKEIAER 522 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L LS T+ +L KL +R + Sbjct: 523 LFLSPRTITTHLYRIYPKLGIKSRGELARL 552 >gi|209518473|ref|ZP_03267295.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209501106|gb|EEA01140.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 262 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 ++ F+ + + A LT RE S L+L +G T+ ++ E L LS T+ Y S Sbjct: 135 YMVDSFITGREAVAPKNAWDVLTARERSVLKLIAEGRTNRQVGEYLNLSPKTIEKYRASV 194 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL N + + AI G + Sbjct: 195 MHKLAIENLTELVLVAISMGLL 216 >gi|111017509|ref|YP_700481.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110817039|gb|ABG92323.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 430 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 68/239 (28%), Gaps = 17/239 (7%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +S+ L + R+ + A A D ++ + Sbjct: 182 RSNDLDDRRSRITASETASAAL--IALRSAGAADRALSEEAVTTAFARLQGELRPLLRHR 239 Query: 70 ETYGDDFLFHFNSGLLPI----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 E D + LP +++ V+ Q + G + + Sbjct: 240 EVDVDYVDPPADGRPLPGEVAHAARAMVRAIVLAFGAQPVLARLRIAWDCDGDNVLIEVR 299 Query: 126 FHKNGYV---IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------L 174 G + T + + + + L A L Sbjct: 300 DQGPGTIDRNALTRQLSGRLHTLRGRIDIESIAGWGSRVTLTIPLDPPAARPDEHLLSTL 359 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L G + IAE+LG+S T+ ++ S KLD NR +A A IR G Sbjct: 360 NPRELEVLAHLAVGKRNRAIAEELGISQSTIKFHVASVLEKLDVANRGEAGAIGIRAGI 418 >gi|289627087|ref|ZP_06460041.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646654|ref|ZP_06477997.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869632|gb|EGH04341.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330888707|gb|EGH21368.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 209 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 30/64 (46%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L S A +LT R+ L L G T++EIA LG+S TV ++ S L R Sbjct: 136 LSDLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRS 195 Query: 223 QAIA 226 A A Sbjct: 196 AAAA 199 >gi|256389326|ref|YP_003110890.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355552|gb|ACU69049.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 233 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 40/110 (36%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +R + +L + I + +S LT E Sbjct: 118 IRGSALVDAVRTVARGGSLLDPTATEKLLSRLRVGIVPGEADREAAASKLATLTVSEKRI 177 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L +G T+ +I E+L L+ TV Y+ KL R QA A A+R Sbjct: 178 LELIAEGLTNRQIGERLNLAEKTVKNYITGILAKLAMQRRTQAAAFAVRH 227 >gi|238794052|ref|ZP_04637670.1| Response regulator uvrY [Yersinia intermedia ATCC 29909] gi|238726684|gb|EEQ18220.1| Response regulator uvrY [Yersinia intermedia ATCC 29909] Length = 206 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181 G + ++ A + I + L + L+ERE Sbjct: 85 GAGGYLSKGAAPQDVVTAIRAVHSGQRYIASDIAQQMALGQLEPPVETPFSCLSERELQI 144 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + G +I+E+L LS TVN+Y KL+ ++ AIR G Sbjct: 145 MLMITKGQKVNDISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 196 >gi|229589258|ref|YP_002871377.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361124|emb|CAY47987.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 208 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE LQL G T++EIA+ + LS TV+ Y KL A + ++ I A R + Sbjct: 150 DRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLQAKSLVELIEMAKRNALV 208 >gi|254501061|ref|ZP_05113212.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222437132|gb|EEE43811.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 181 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + + F ++ + R +++ RE + +G TS+EIA L +S TV + Sbjct: 104 AKAVWSFADISEDR--PLADMSVRERQVATMLAEGLTSKEIARALDISHRTVEVHRARLM 161 Query: 214 VKLDAVNRIQAIA 226 K +A N ++ IA Sbjct: 162 KKFNARNSLELIA 174 >gi|329940179|ref|ZP_08289461.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301005|gb|EGG44901.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 219 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 161 LELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +R A + L+ RE L+L +G +++ I +GLS TV ++L Sbjct: 138 AARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIA 197 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL +R +A A+R G I Sbjct: 198 RKLGTGDRAGMVAVALRTGII 218 >gi|300787440|ref|YP_003767731.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796954|gb|ADJ47329.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + + + E +++A + L + L+E+E L L G+ Sbjct: 114 GLQLVDAIRRVGSGETLLDARAVA--ALVSELRAKTGKPGPLAGLSEQELVLLDLLGESL 171 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+ +IAE++ L+ TV Y+ KL R QA Sbjct: 172 TNRQIAERMFLAEKTVKNYVSRLLAKLGLERRSQAAVL 209 >gi|269104524|ref|ZP_06157220.1| transcriptional activator of maltose regulon MalT [Photobacterium damselae subsp. damselae CIP 102761] gi|268161164|gb|EEZ39661.1| transcriptional activator of maltose regulon MalT [Photobacterium damselae subsp. damselae CIP 102761] Length = 902 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF- 231 LT+RE L L GY++E+IA +L ++ T+ ++ + KL NR +AI A Sbjct: 838 PLTQREWQVLGLIYSGYSNEQIASELDVAATTIKTHIRNLYQKLGIANRQEAITTAEELI 897 Query: 232 GY 233 G Sbjct: 898 GL 899 >gi|237785039|ref|YP_002905744.1| LuxR family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237757951|gb|ACR17201.1| transcriptional regulator, LuxR family [Corynebacterium kroppenstedtii DSM 44385] Length = 279 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++++ E C Q++ R L+ RE L G+T+ E AE+ Sbjct: 188 NRVESDDLRQELEQLCDQMVQPV------RVKQTTKLSARELDVLACVALGHTNVEAAEE 241 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 242 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276 >gi|325271782|ref|ZP_08138255.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324103086|gb|EGC00460.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 221 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ++ L+ G ++++IA L ++ TV A++ + KL+ NR+QAI A Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210 >gi|300854927|ref|YP_003779911.1| putative membrane-associated response regulator [Clostridium ljungdahlii DSM 13528] gi|300435042|gb|ADK14809.1| predicted membrane-associated response regulator with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 301 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 32/50 (64%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 TE++ ++L +G T ++IAEKL +S TV+ ++ + KL+ +++Q Sbjct: 243 TEKQGEIIELIMEGVTYKQIAEKLFISPKTVDNHIQNIYKKLNVNSKMQL 292 >gi|290476079|ref|YP_003468977.1| response regulator (activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) [Xenorhabdus bovienii SS-2004] gi|289175410|emb|CBJ82213.1| response regulator (activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) [Xenorhabdus bovienii SS-2004] Length = 209 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 11/123 (8%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGA----CYQVITDF---LELF 164 I V + + + +++A + D L Sbjct: 74 HCIMLSVHDSVTMVENALKAGARGYLSKRCSPDELLQAVRTTANNGCYLTPDIALKLASS 133 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K ++ +LT+RE ++ G + +A +LGLS TV+ + + KL N + Sbjct: 134 KNSQTSLDHLTKRERQVGEMLARGMDVKVVAAELGLSHKTVHVHRANVMSKLGVTNNVGL 193 Query: 225 IAK 227 + Sbjct: 194 VNY 196 >gi|229490955|ref|ZP_04384788.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229322071|gb|EEN87859.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length = 212 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE+ L L +G +++EIAE L L V TV ++ + K NR++ Sbjct: 152 PLTDRESQVLALVAEGKSNQEIAETLHLGVTTVKTHVANLMSKTGCDNRVRLAVY 206 >gi|167576825|ref|ZP_02369699.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis TXDOH] Length = 210 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 12/123 (9%) Query: 116 AGIAFPVR--LGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKK 166 G P+ G + + + + ++E ++ T ++ Sbjct: 74 RGATLPIIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRAMKLATQRHAADRR 133 Query: 167 RSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R LT RE L+ DG S++IA L +SV TV+ + S KL A + Sbjct: 134 RRELRRRIDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAA 193 Query: 224 AIA 226 + Sbjct: 194 LVR 196 >gi|98986217|dbj|BAE94501.1| response regulator involved in catabolite control [Acidovorax sp. KKS102] Length = 208 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%) Query: 148 EAHGACYQVITDFLE------LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E G +++ E R + LT RE L+ G +++IA+ LG+S Sbjct: 114 ELVGLVERMLDHARESFAGYQQAASRDALLSKLTSREAQVLERIVAGRLNKQIADDLGIS 173 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + TV A+ + KL+A + A+ Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIAL 201 >gi|229508237|ref|ZP_04397742.1| response regulator VieA [Vibrio cholerae BX 330286] gi|229511524|ref|ZP_04401003.1| response regulator VieA [Vibrio cholerae B33] gi|229518663|ref|ZP_04408106.1| response regulator VieA [Vibrio cholerae RC9] gi|229607811|ref|YP_002878459.1| response regulator VieA [Vibrio cholerae MJ-1236] gi|254848771|ref|ZP_05238121.1| response regulator VieA [Vibrio cholerae MO10] gi|262161795|ref|ZP_06030813.1| response regulator VieA [Vibrio cholerae INDRE 91/1] gi|229343352|gb|EEO08327.1| response regulator VieA [Vibrio cholerae RC9] gi|229351489|gb|EEO16430.1| response regulator VieA [Vibrio cholerae B33] gi|229355742|gb|EEO20663.1| response regulator VieA [Vibrio cholerae BX 330286] gi|229370466|gb|ACQ60889.1| response regulator VieA [Vibrio cholerae MJ-1236] gi|254844476|gb|EET22890.1| response regulator VieA [Vibrio cholerae MO10] gi|262028527|gb|EEY47182.1| response regulator VieA [Vibrio cholerae INDRE 91/1] Length = 581 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%) Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + G + G V+ + + ++ ++++A + + EL + Sbjct: 466 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 523 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + ++ +G T++EIA +L ++ TV+ Y KL + ++ + Sbjct: 524 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 577 >gi|148547394|ref|YP_001267496.1| two component LuxR family transcriptional regulator [Pseudomonas putida F1] gi|148511452|gb|ABQ78312.1| two component transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 221 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ++ L+ G ++++IA L ++ TV A++ + KL+ NR+QAI A Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210 >gi|311109180|ref|YP_003982033.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310763869|gb|ADP19318.1| bacterial regulatory protein, LuxR family protein 12 [Achromobacter xylosoxidans A8] Length = 209 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ +E Q+ G +++EI + L +S TV+ + KL + ++ + A + Sbjct: 146 DLLSNKEMVVTQMLAQGLSNKEIGDALFISNKTVSTHKTRIMNKLQIGSLVELVDFARKS 205 Query: 232 GY 233 Sbjct: 206 KI 207 >gi|302340328|ref|YP_003805534.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301637513|gb|ADK82940.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 217 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K R R L+ RE L GY+++EIAE L ++ TV ++ S K NR Sbjct: 149 SFTKTRQELLRQLSRREREVYGLMLQGYSNDEIAEMLFIATQTVKNHIRSIYSKSGFHNR 208 Query: 222 IQAIAK 227 I Sbjct: 209 SDIIHL 214 >gi|291301148|ref|YP_003512426.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570368|gb|ADD43333.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 214 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 35/75 (46%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + ++ LT RE L L G GY + +IAE+L L V TV ++ S K Sbjct: 136 SAVRARASVPTATLPKLTTREREVLALVGAGYANVDIAERLHLGVTTVKTHIASLMTKTG 195 Query: 218 AVNRIQAIAKAIRFG 232 NR++ A+R G Sbjct: 196 CSNRVRLAVLAVRSG 210 >gi|120436972|ref|YP_862658.1| two-component system response regulator [Gramella forsetii KT0803] gi|117579122|emb|CAL67591.1| two-component system response regulator [Gramella forsetii KT0803] Length = 205 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT R+ L+L G G T++EIA++L + TV + + KL + + A+ Sbjct: 144 LTGRQREILKLIGQGRTNQEIADQLFIGKTTVETHRKNMIRKLGLQGAGELLRYALE 200 >gi|120402926|ref|YP_952755.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1] gi|119955744|gb|ABM12749.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 862 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 9/109 (8%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTERETSCLQLA 185 + L + A +V D R LT R+ L+L Sbjct: 753 AAVRRALDALDRLGADAVANKVRADLRATGATAVPGPRRASTLSNPAGLTVRQVEVLRLL 812 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GDG T+ E+AE+L LSV TV+ ++ + KLD R A+ +A G + Sbjct: 813 GDGLTNAELAERLFLSVKTVDHHVSAILTKLDVTKRRDAVRRAREVGIL 861 >gi|92118486|ref|YP_578215.1| two component LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801380|gb|ABE63755.1| two component transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 263 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + A L+ RE + L+ G +++ IA K+ ++ TV ++ + K+ A NR Sbjct: 157 LVAREDATAPQLSPRELAILRCLISGNSNKCIARKIDIAEATVKVHVKAILRKIRAQNRT 216 Query: 223 QAIAKAIRFGYI 234 QA + + Sbjct: 217 QAAIWGMNHPLL 228 >gi|78063892|ref|YP_373800.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77971777|gb|ABB13156.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 922 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V+ ++ + ++ R A NL+ RE L G ++ Sbjct: 812 VLKRADRFPAVGAWYLRELARAFEADRASNAAPAARPGTAGNLSAREVEILDYVARGLSN 871 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +EIA L ++ T+ +L + KL+ +RIQA+ Sbjct: 872 KEIARALRVAPETIKWHLKNIFEKLNVTSRIQAVR 906 >gi|300782196|ref|YP_003762487.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299791710|gb|ADJ42085.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 969 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + R L+ RE ++ +G T+ EIA+ L LS TV ++ KL Sbjct: 888 HGAWAPSQRGRRGYGSELSPREREVARMLAEGRTNREIADGLFLSPRTVEQHVAKVLRKL 947 Query: 217 DAVNRIQAIAK 227 A +R K Sbjct: 948 GARSRTDVARK 958 >gi|288919194|ref|ZP_06413532.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349441|gb|EFC83680.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 215 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%) Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 V +E F +R SA LT RE + L G G +++EIA L +S T Sbjct: 126 LLSPTVTRRVIEAFARRPSAPAAVDLSGLTGREREVMGLVGMGLSNDEIAAHLVISPATA 185 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ +KL A +R Q A + G Sbjct: 186 RTHVSRVMIKLAARDRAQLAVLANQAGL 213 >gi|262200121|ref|YP_003271329.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083468|gb|ACY19436.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 267 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + L +A+ ++ +F S LT RE L LA Sbjct: 159 DGDRLAQAYARLRLFVAHSDDAGLAAELDRLTAEFTS-EATSSVDLPALTGREHDVLALA 217 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G+++ IA++LG++VHT YL SA KL A R++A+ A R G Sbjct: 218 ALGHSNARIADQLGITVHTTKGYLKSAMRKLGATTRLEAVITARRAGL 265 >gi|290956584|ref|YP_003487766.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260646110|emb|CBG69203.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 198 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQL 184 + T + A R L+ RE L+L Sbjct: 88 AGGVKGYVVTGTRTNIGLPTRPGAAPLGSAARMHRRPPGAPSHPGGYRELSGREVEVLRL 147 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++ I +GLS TV ++L KL +R +A A+R G I Sbjct: 148 VAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 197 >gi|226225845|ref|YP_002759951.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089036|dbj|BAH37481.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 231 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 E + LT+RE L++ +GYT+ EI E L +S TV+ Y KL + Sbjct: 154 REGHADERARFEKLTDREQVVLKMVAEGYTAPEIGEHLTISPKTVDTYKQRIGEKLGLTH 213 Query: 221 RIQAIAKAIRFGYI 234 R + A++ G + Sbjct: 214 RTDYVKFALKLGLL 227 >gi|254283973|ref|ZP_04958941.1| transcriptional regulator, LuxR family [gamma proteobacterium NOR51-B] gi|219680176|gb|EED36525.1| transcriptional regulator, LuxR family [gamma proteobacterium NOR51-B] Length = 206 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 G +++ + LT RE L G G ++EIAE LG+S TV Sbjct: 119 GLVQRMVAIAARVDPDTPQPEVEGFDALTHREYEVAALVGKGANNKEIAELLGVSERTVK 178 Query: 207 AYLGSATVKLDAVNRIQAI 225 A+L + KL+ +R+Q Sbjct: 179 AHLTAIFEKLELRDRVQLA 197 >gi|332666515|ref|YP_004449303.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335329|gb|AEE52430.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 236 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+LA G++++EIAE+L SV TV A+ + KL A N ++ KA Sbjct: 176 LTKREIQILKLAISGHSNKEIAEQLDKSVRTVEAHRFNLMKKLKAKNLMELSVKAHELKL 235 >gi|331694091|ref|YP_004330330.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326948780|gb|AEA22477.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 890 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 1/107 (0%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGD 187 GYV + ++ + LT RE L+L Sbjct: 778 AGYVQVFLDERRSLAALLATVATPGGVLAAQVRRPTADVPGGPVDALTARELDVLRLLDT 837 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA +L +SV+TV + + KL NR A+ + G + Sbjct: 838 DLDGPDIARRLFVSVNTVRTHTKNIYAKLGVNNRRAAVRRGDELGLL 884 >gi|319942872|ref|ZP_08017155.1| regulatory protein [Lautropia mirabilis ATCC 51599] gi|319743414|gb|EFV95818.1| regulatory protein [Lautropia mirabilis ATCC 51599] Length = 261 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R L+ER+ S L+L G ++ I +LGL+ TV ++ S L +R Q Sbjct: 184 REYRDGRHLGLSERQRSVLRLMMLGLPNKSICRELGLAEGTVKVHVSSILRILGISSRAQ 243 Query: 224 AIAKAIRFGY 233 A+R G Sbjct: 244 VAMAAMRSGI 253 >gi|296446398|ref|ZP_06888342.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296256033|gb|EFH03116.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 283 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 52/98 (53%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G F S+ + + A A ++ F+++ K RS NLT RE S L G G+ Sbjct: 153 GGAGFVSKRAPPERLLDVLASVAAGDMVFPFVDIRKMRSDPLENLTLRERSLLSALGSGH 212 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+ ++A+ G+S++T+ +L + KL+ NR QAI+ Sbjct: 213 TNNQLAKDFGVSINTIKFHLRNLFEKLEVRNRAQAISL 250 >gi|302867979|ref|YP_003836616.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302570838|gb|ADL47040.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 979 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 10/155 (6%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + P + +++ + + L +A + G V T+E Sbjct: 830 RNHPYPAAYSRLRQAEALLARRSRVATAGKLLHRAYAMAQSL-------GAVPLTAEIRT 882 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEK 197 +A+ + A A L T RE L +G T+ EI ++ Sbjct: 883 IASRARVTLDAAPDPAPVPRQRAAAPAGPAVDELATLTAREREVLAAVAEGLTNREIGQR 942 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L +S T+ ++ KL R+QA A +R G Sbjct: 943 LFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNG 977 >gi|227502153|ref|ZP_03932202.1| regulatory family protein [Corynebacterium accolens ATCC 49725] gi|306836811|ref|ZP_07469769.1| LuxR family bacterial regulatory protein [Corynebacterium accolens ATCC 49726] gi|227077137|gb|EEI15100.1| regulatory family protein [Corynebacterium accolens ATCC 49725] gi|304567272|gb|EFM42879.1| LuxR family bacterial regulatory protein [Corynebacterium accolens ATCC 49726] Length = 279 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + E+ E C Q+++ R + L+ RE L G+T+ E AE+ Sbjct: 188 NRVEDEELRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 241 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 242 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276 >gi|182419652|ref|ZP_02950897.1| transcriptional regulatory protein DegU [Clostridium butyricum 5521] gi|237665755|ref|ZP_04525743.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376542|gb|EDT74119.1| transcriptional regulatory protein DegU [Clostridium butyricum 5521] gi|237658702|gb|EEP56254.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 216 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE L G G ++++I +L L+ T+ YL KL+ +R + Sbjct: 157 LTKREMDVAILVGQGKSNKDICNELFLTEGTIKNYLTKIFEKLNLASRTELALF 210 >gi|323699933|ref|ZP_08111845.1| transcriptional regulator, LuxR family [Desulfovibrio sp. ND132] gi|323459865|gb|EGB15730.1| transcriptional regulator, LuxR family [Desulfovibrio desulfuricans ND132] Length = 466 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 9/89 (10%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIA 195 +I + ++ + L + + +A L+ RE L DG +++I Sbjct: 367 LIGAVNRRLAPILVNQQFLEEDQGPSAEELRLGMIREKLSPREMDVFLLLRDGCANKDIC 426 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + L +S++TV + KL +R + Sbjct: 427 DSLHISINTVKTHNRRIFAKLGLRDRAEL 455 >gi|270158837|ref|ZP_06187494.1| transcriptional regulator [Legionella longbeachae D-4968] gi|289166371|ref|YP_003456509.1| regulatory protein, luxR family [Legionella longbeachae NSW150] gi|269990862|gb|EEZ97116.1| transcriptional regulator [Legionella longbeachae D-4968] gi|288859544|emb|CBJ13509.1| putative regulatory protein, luxR family [Legionella longbeachae NSW150] Length = 228 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 1/115 (0%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERET 179 P+R K ++ S + ++ + +E + + LT ++ Sbjct: 110 PLRSRDGKLIGIVGISFQIDSDISLLTALQETIPFMTPSTIENVPLPIRNLNNQLTAKQI 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL G T ++I +KL LS TV +L +A KL NR + IA A++ I Sbjct: 170 DCLYHLVKGLTIKQIGQKLNLSPRTVEDHLNAAKNKLHCHNRAELIAAALQIPLI 224 >gi|254786408|ref|YP_003073837.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237685783|gb|ACR13047.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 217 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ K +S L+ERE + +G EIAE +S TVN Y Sbjct: 129 IAQQLALRTFSGAKGDASPFEALSERELQTAIMIANGSRVHEIAESFCVSPKTVNTYRYR 188 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL + ++ A++ + Sbjct: 189 IFDKLSINSDVELALLAVKHKLL 211 >gi|227081385|ref|YP_002809936.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227009273|gb|ACP05485.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGIL 209 >gi|157375006|ref|YP_001473606.1| two component LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157317380|gb|ABV36478.1| two component transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 219 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT ++ L + +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 155 LTPQQYKVLGMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207 >gi|83717609|ref|YP_439733.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|167616299|ref|ZP_02384934.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|83651434|gb|ABC35498.1| transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 288 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 59/233 (25%), Gaps = 13/233 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 M+ + +SS + ++ A P +L Sbjct: 56 MTHDPARSDSASSYAHALRACVGSLQALARPTATVFYRIDASGEPVDFELFGMTAAMHRA 115 Query: 61 SGDIPNILIETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 L D S ++ + Q + + Sbjct: 116 YVSRYRPL-----DPLHPARCASQPGAVVTLASQLPDERRDASSYWTGFLRRHGVADVVE 170 Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAAR 172 +R G + I H V L + +R + Sbjct: 171 VLLRDGGAPVAAFSLLRLAGGGRYSAAEIAALHAVQPVVEVALLPPLRAVRGIRRIACDV 230 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DG +++ IA L L TV +L KL NR + + Sbjct: 231 RLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 283 >gi|116620528|ref|YP_822684.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223690|gb|ABJ82399.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 251 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G ++EIA L +S TV YL K+ +R + ++ Sbjct: 138 ALTQREGQLVSLLSQGLKNKEIATTLMISEGTVKVYLSRLFQKVGVKDRFELALFGLKN 196 >gi|328474716|gb|EGF45521.1| response regulator [Vibrio parahaemolyticus 10329] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + ++L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFSPASENPFKDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGEVELTHLAIRHGML 209 >gi|326331785|ref|ZP_08198073.1| putative large transcriptional regulator [Nocardioidaceae bacterium Broad-1] gi|325950584|gb|EGD42636.1| putative large transcriptional regulator [Nocardioidaceae bacterium Broad-1] Length = 960 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 15/154 (9%) Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 GD +W + + L L G V Sbjct: 800 GDPVAAAGLYAGAAAVWADLP---------RPYDELLA--LERHGRCLLATGEQDNAVRV 848 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDG 188 + + + +A + +E+ + R L+ RE +QL G Sbjct: 849 LSDVQQRLSTLGARWDADRVARALRQLGVEVARTWRRGRRGYGEQLSPREVEVIQLVARG 908 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 T++++A+ L +S TV+ ++ +A KLD +R Sbjct: 909 MTNKQVADTLFISPRTVHRHVSTAMRKLDVSSRT 942 >gi|307726643|ref|YP_003909856.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587168|gb|ADN60565.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 212 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+++E LQ+ G +++ I + L +S TV+++ KL + ++ I A R Sbjct: 150 LSDKELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMHKLGVKSLVELIDLARR 206 >gi|302526808|ref|ZP_07279150.1| LuxR family transcriptional regulator [Streptomyces sp. AA4] gi|302435703|gb|EFL07519.1| LuxR family transcriptional regulator [Streptomyces sp. AA4] Length = 217 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +T + +K+ +L+++E + L L G+G T+ +I+E++ L+ TV Y+ KL Sbjct: 134 MTKLRDSAEKQRGPLAHLSDQERTLLALIGEGLTNRQISERMFLAEKTVKNYVSRLLTKL 193 Query: 217 DAVNRIQAIAKAIRF 231 R QA A Sbjct: 194 GLERRTQAAVLATEL 208 >gi|224827162|ref|ZP_03700258.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224600671|gb|EEG06858.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 208 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 118 IAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSA 170 I + +F+ + ++ D E + + + + Sbjct: 79 IMLTAHGDVPHAVAALKLGAIDFMEKPFDDGRLLAMVDQALLRDQQERDRFGRLSRLNQS 138 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE +QL G +++IA++L +S+ TV + K+ + ++ Sbjct: 139 LALLTEREREVMQLILAGKLNKQIADELAISMKTVEVHRSRVFDKMGVKSAVELA 193 >gi|222082949|ref|YP_002542314.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727628|gb|ACM30717.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 219 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L+ G TS ++AE+LG+S T + + KL+ + + A A+R G Sbjct: 156 PLTLRERQVLLLSAQGQTSRQMAERLGISPLTARKHRENLMRKLNLHSTAEVTAYAVRLG 215 Query: 233 Y 233 Sbjct: 216 L 216 >gi|149192492|ref|ZP_01870678.1| response regulator [Vibrio shilonii AK1] gi|148833673|gb|EDL50724.1| response regulator [Vibrio shilonii AK1] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + ++L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFSSASENPFKDLSERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGML 209 >gi|118581123|ref|YP_902373.1| two component LuxR family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503833|gb|ABL00316.1| two component transcriptional regulator, LuxR family [Pelobacter propionicus DSM 2379] Length = 208 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S +L+ RE +QL +G TS EIAE L LS ++ Y VKL N + A Sbjct: 140 SPLDSLSLREREVIQLVVEGRTSAEIAELLSLSPKSIETYRSRLMVKLGVGNIPALVKFA 199 Query: 229 IRFGY 233 ++ G Sbjct: 200 LQHGI 204 >gi|327480893|gb|AEA84203.1| DNA-binding response regulator AgmR [Pseudomonas stutzeri DSM 4166] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 158 TDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + LT ++ L+ G ++++IA L ++ TV A++ + K Sbjct: 138 SRHSHHSEPSIPPELLQALTRKQLLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRK 197 Query: 216 LDAVNRIQAIAKA 228 L+ NR+QAI A Sbjct: 198 LNVHNRVQAILSA 210 >gi|319941693|ref|ZP_08016016.1| hypothetical protein HMPREF9464_01235 [Sutterella wadsworthensis 3_1_45B] gi|319804814|gb|EFW01676.1| hypothetical protein HMPREF9464_01235 [Sutterella wadsworthensis 3_1_45B] Length = 216 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 12/144 (8%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 ET++E L V V G A EV++ A Sbjct: 71 ETLVERGSLLPVIFLSAHGDIPMAMQAVHRGAMDFLV-------KPAAPEVLLAAVEKAV 123 Query: 155 QVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + + A+ LTERE +L G +++IA++L +S+ TV + G+ Sbjct: 124 KKNLADIAAEAGQVDLAQKAALLTERELEVARLVAQGLLNKQIADRLSISLPTVKLHRGN 183 Query: 212 ATVKLDAVNRIQAIAKAIRF-GYI 234 A KL + + A+AKA+ G + Sbjct: 184 AARKLGVRSAV-AMAKALEMAGLL 206 >gi|257063869|ref|YP_003143541.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791522|gb|ACV22192.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 515 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 28/56 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G++S IAEKL +S TV + + KLD +R + I A Sbjct: 456 GLTAREKEIAALTAQGFSSTYIAEKLVVSASTVRFHQQNVYRKLDIHSRTELIEIA 511 >gi|27377555|ref|NP_769084.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350699|dbj|BAC47709.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 249 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 51/176 (28%), Gaps = 6/176 (3%) Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + D S P S+ T +E + GI Sbjct: 74 MARAYVEEFQRCDPISPRLRSRRGPTPIYSVINRTELER-TRYFNEFLRVHQTTDGIDLH 132 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARNLTE 176 + G G F A + D LT+ Sbjct: 133 LYDGDTSVGDFRFWRAPGRAPVGSREVALLTLLQPILLRATKDVHSTSTAAGHRLPQLTD 192 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE + L DG T IA KLG+S TV ++L KL+ NR IA+ R G Sbjct: 193 RENQIVGLVADGLTDGIIARKLGISYWTVRSHLDHVFEKLETPNRATLIARIHREG 248 >gi|53725082|ref|YP_102613.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|67641979|ref|ZP_00440743.1| capsular synthesis regulator component B [Burkholderia mallei GB8 horse 4] gi|76811092|ref|YP_333198.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121601120|ref|YP_992735.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124384327|ref|YP_001026471.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126449531|ref|YP_001080252.1| capsular synthesis regulator component B [Burkholderia mallei NCTC 10247] gi|126454700|ref|YP_001065911.1| capsular synthesis regulator component B [Burkholderia pseudomallei 1106a] gi|134282838|ref|ZP_01769541.1| capsular synthesis regulator component B [Burkholderia pseudomallei 305] gi|167001870|ref|ZP_02267660.1| capsular synthesis regulator component B [Burkholderia mallei PRL-20] gi|167738961|ref|ZP_02411735.1| capsular synthesis regulator component B [Burkholderia pseudomallei 14] gi|167824553|ref|ZP_02456024.1| capsular synthesis regulator component B [Burkholderia pseudomallei 9] gi|167846086|ref|ZP_02471594.1| capsular synthesis regulator component B [Burkholderia pseudomallei B7210] gi|167894656|ref|ZP_02482058.1| capsular synthesis regulator component B [Burkholderia pseudomallei 7894] gi|167903066|ref|ZP_02490271.1| capsular synthesis regulator component B [Burkholderia pseudomallei NCTC 13177] gi|167911297|ref|ZP_02498388.1| capsular synthesis regulator component B [Burkholderia pseudomallei 112] gi|167919317|ref|ZP_02506408.1| capsular synthesis regulator component B [Burkholderia pseudomallei BCC215] gi|217423762|ref|ZP_03455263.1| capsular synthesis regulator component B [Burkholderia pseudomallei 576] gi|226192919|ref|ZP_03788531.1| capsular synthesis regulator component B [Burkholderia pseudomallei Pakistan 9] gi|237811926|ref|YP_002896377.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242317427|ref|ZP_04816443.1| capsular synthesis regulator component B [Burkholderia pseudomallei 1106b] gi|254178165|ref|ZP_04884820.1| capsular synthesis regulator component B [Burkholderia mallei ATCC 10399] gi|254180086|ref|ZP_04886685.1| capsular synthesis regulator component B [Burkholderia pseudomallei 1655] gi|254188508|ref|ZP_04895019.1| capsular synthesis regulator component B [Burkholderia pseudomallei Pasteur 52237] gi|254197245|ref|ZP_04903667.1| capsular synthesis regulator component B [Burkholderia pseudomallei S13] gi|254199547|ref|ZP_04905913.1| capsular synthesis regulator component B [Burkholderia mallei FMH] gi|254205865|ref|ZP_04912217.1| capsular synthesis regulator component B [Burkholderia mallei JHU] gi|254258480|ref|ZP_04949534.1| capsular synthesis regulator component B [Burkholderia pseudomallei 1710a] gi|254358733|ref|ZP_04975006.1| capsular synthesis regulator component B [Burkholderia mallei 2002721280] gi|52428505|gb|AAU49098.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76580545|gb|ABA50020.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121229930|gb|ABM52448.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124292347|gb|ABN01616.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126228342|gb|ABN91882.1| capsular synthesis regulator component B [Burkholderia pseudomallei 1106a] gi|126242401|gb|ABO05494.1| capsular synthesis regulator component B [Burkholderia mallei NCTC 10247] gi|134245924|gb|EBA46015.1| capsular synthesis regulator component B [Burkholderia pseudomallei 305] gi|147749143|gb|EDK56217.1| capsular synthesis regulator component B [Burkholderia mallei FMH] gi|147753308|gb|EDK60373.1| capsular synthesis regulator component B [Burkholderia mallei JHU] gi|148027860|gb|EDK85881.1| capsular synthesis regulator component B [Burkholderia mallei 2002721280] gi|157936187|gb|EDO91857.1| capsular synthesis regulator component B [Burkholderia pseudomallei Pasteur 52237] gi|160699204|gb|EDP89174.1| capsular synthesis regulator component B [Burkholderia mallei ATCC 10399] gi|169653986|gb|EDS86679.1| capsular synthesis regulator component B [Burkholderia pseudomallei S13] gi|184210626|gb|EDU07669.1| capsular synthesis regulator component B [Burkholderia pseudomallei 1655] gi|217393620|gb|EEC33641.1| capsular synthesis regulator component B [Burkholderia pseudomallei 576] gi|225935009|gb|EEH30984.1| capsular synthesis regulator component B [Burkholderia pseudomallei Pakistan 9] gi|237502945|gb|ACQ95263.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|238523017|gb|EEP86458.1| capsular synthesis regulator component B [Burkholderia mallei GB8 horse 4] gi|242140666|gb|EES27068.1| capsular synthesis regulator component B [Burkholderia pseudomallei 1106b] gi|243062372|gb|EES44558.1| capsular synthesis regulator component B [Burkholderia mallei PRL-20] gi|254217169|gb|EET06553.1| capsular synthesis regulator component B [Burkholderia pseudomallei 1710a] Length = 210 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 14/184 (7%) Query: 65 PNILIETYGDDFLFHFNSGLLP---IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 ++ D P +I E + + G I Sbjct: 27 DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAADGLAMLTAIRDGYPSVRVIVLT 86 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSA 170 + + +L+ ++ + + + A Sbjct: 87 MLDNPVLMHTMRQAGALAVLSKRGDLDELPRALAAVYQGRPFVGTHAGAAGGGAMRGTDA 146 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L+ RE ++L G T +IA + G S+ TV+ + +A KL + + A Sbjct: 147 PRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 206 Query: 231 FGYI 234 G + Sbjct: 207 NGLV 210 >gi|330973427|gb|EGH73493.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 87 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT +E L+ G ++ EI+ G S TV+ + + K + A+ Sbjct: 18 TPATVQLTAKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVM 77 Query: 228 AIRFGYI 234 AIR G I Sbjct: 78 AIRQGVI 84 >gi|294815261|ref|ZP_06773904.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294327860|gb|EFG09503.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 1034 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 38/113 (33%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 + G T E + A + + LT RE Sbjct: 915 SAADTARRVGDRPLTEEIALTARGARLALPASASGPDGPHGPAAAPEPGPGLGLTPREED 974 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++ +IA+ L +S T + ++ + KL R +A A A R Sbjct: 975 VLRLVSAGRSNRQIAQTLSISPKTASVHVSNILAKLGVSGRGEAAALAHRLRL 1027 >gi|317054305|ref|YP_004118330.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] gi|316952300|gb|ADU71774.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] Length = 900 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 AH V LT+RE L L GY++E+IA +L ++ T+ + Sbjct: 811 AHFDEGFVSRLLNHPDVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELDIAATTIKTH 870 Query: 209 LGSATVKLDAVNRIQAIAKA 228 + + KL +R QA+ +A Sbjct: 871 IRNLYQKLGVSHRSQAVNQA 890 >gi|302878856|ref|YP_003847420.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302581645|gb|ADL55656.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 211 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 14/156 (8%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVII 147 + + E+ L R+ + + + + ++ Sbjct: 54 LDLDMPGENGANLIERIRRHYPDLLILILSAHDEIKVVSRAVQAGASGYICKDCSPKTLL 113 Query: 148 EAHGACYQ-------VITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEK 197 EA ++ + L A +L + RE +L +G ++++I+ + Sbjct: 114 EAIHKVVATGKYLSPLMAEELAYTSAIPQANNSLALLSSREQEIFRLLVEGLSNDDISRQ 173 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +S TV+A+ + KL N ++ + +I+ Sbjct: 174 LFISDRTVSAHKINLLNKLGLKNVVELVHYSIQHQL 209 >gi|300777620|ref|ZP_07087478.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300503130|gb|EFK34270.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 212 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + ++ +L+ERE L GY + EI+ +L L + TV+ Y KL+ N + Sbjct: 140 EAPANPLESLSEREKEIFDLLIQGYGNIEISNELNLHLSTVSTYKTRIYKKLNIKNTVDL 199 Query: 225 IAKAIRF 231 + R Sbjct: 200 VRLGDRN 206 >gi|297191334|ref|ZP_06908732.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720655|gb|EDY64563.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 220 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183 + T + + A S R L+ RE L+ Sbjct: 109 AGGVKGYVVTGTRTNIGHPTRPGAAPIGAAANRMHRRPPGAPSHPGGYRELSGREVEVLR 168 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++ I +GLS TV ++L KL +R +A A+R G I Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|149278558|ref|ZP_01884694.1| two-component response regulator [Pedobacter sp. BAL39] gi|149230553|gb|EDM35936.1| two-component response regulator [Pedobacter sp. BAL39] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 164 FKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 ++ + A A + T+RE LQL G+T+ EIA+KL LS TV + K + Sbjct: 140 SERVNPASNHNADDFTQREMEILQLIALGHTNSEIADKLFLSKRTVEGHRQLLLNKTQSR 199 Query: 220 NRIQAIAKAIRFGYI 234 N I A G + Sbjct: 200 NSAHLIKTATVMGLV 214 >gi|90417180|ref|ZP_01225107.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2207] gi|90330956|gb|EAS46217.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2207] Length = 275 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 29/229 (12%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET--YGDDFL 77 + ++ + N + Q L+ L+ + + D F Sbjct: 28 LVQMLNTLVPFDNAVILHY-----RHDEQPLLIYNDTPPLEIKRQIDTFVSAAFLIDPFY 82 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN-----GYV 132 + + + L + F V L + G + Sbjct: 83 RAAVDYRASGLHRLSDLAPRGFEDTEYYRSYFRYTLIKDEVGFIVHLSADQFINISMGRM 142 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITD-------FLELFKKRSSA----------ARNLT 175 F+ F ++ + V ++ + R + LT Sbjct: 143 TFSQPFNRAQISLLEDITEVIEAVCKQQWAGENGVQQVPENRLPSQLDSALKDFGTAYLT 202 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +RET +QL G++++ IAE+LG+S TV + ++ KLD ++ + Sbjct: 203 DRETQVVQLFLHGHSTKSIAERLGISPETVKLHRKNSYAKLDVSSQAEL 251 >gi|73540228|ref|YP_294748.1| LuxR response regulator receiver [Ralstonia eutropha JMP134] gi|72117641|gb|AAZ59904.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia eutropha JMP134] Length = 212 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 12/155 (7%) Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANEVIIEAH 150 ++ + + ++ L RL + + + + E Sbjct: 58 VELDALGQAGITLIKRLAARHPDVRLLVLSDSDATMAPVQALRAGAHGFVPRQRDLAEMV 117 Query: 151 GACYQVITDFLELFKKRSSAAR-----------NLTERETSCLQLAGDGYTSEEIAEKLG 199 A V++ +L AAR LT RE + LQ G++++ I +L Sbjct: 118 QAARGVMSGYLVFPTHTLDAARKLRLPSAGKLARLTARELTVLQYLARGHSNKTIGARLL 177 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV+ + + KL+ + ++ + A + + Sbjct: 178 ISSKTVSTHKTNIMCKLNVGSVVEMVDYARQHRLL 212 >gi|19553757|ref|NP_601759.1| regulatory-like protein [Corynebacterium glutamicum ATCC 13032] gi|62391399|ref|YP_226801.1| LuxR family regulatory protein [Corynebacterium glutamicum ATCC 13032] gi|145296555|ref|YP_001139376.1| hypothetical protein cgR_2464 [Corynebacterium glutamicum R] gi|21325332|dbj|BAB99953.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|41326740|emb|CAF21222.1| Bacterial regulatory protein, LuxR family [Corynebacterium glutamicum ATCC 13032] gi|140846475|dbj|BAF55474.1| hypothetical protein [Corynebacterium glutamicum R] Length = 281 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++ + C Q++T R L+ RE L G+T+ E AE+ Sbjct: 190 NRVTDEDLRRDLEELCDQMVTPV------RIKQTTKLSARELDVLACVALGHTNVEAAEE 243 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G+ TV +YL S KL A R +A+ A R G Sbjct: 244 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 278 >gi|332283747|ref|YP_004415658.1| LuxR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330427700|gb|AEC19034.1| LuxR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 203 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 25/54 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE +G T +E A LG+S TV + KL A N + ++K Sbjct: 141 LTPREQEVSGFIVNGLTCKETAIALGISHRTVEVHRARVMKKLGAKNTAELVSK 194 >gi|295396479|ref|ZP_06806640.1| possible ATP-dependent transcription regulator LuxR [Brevibacterium mcbrellneri ATCC 49030] gi|294970671|gb|EFG46585.1| possible ATP-dependent transcription regulator LuxR [Brevibacterium mcbrellneri ATCC 49030] Length = 851 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ERET LQL G ++ +IA+ + L V+TV +L + +L NR + A + G Sbjct: 789 QMSERETQILQLLASGKSNRQIADSVFLGVNTVKWHLKNLYRRLGVSNRDDCVKVARQRG 848 Query: 233 YI 234 + Sbjct: 849 MV 850 >gi|154493931|ref|ZP_02033251.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC 43184] gi|154086191|gb|EDN85236.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC 43184] Length = 202 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + G T+ EIA++L LS HTV + + KL + AI Sbjct: 135 LSAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVNKL 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|94264892|ref|ZP_01288666.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93454662|gb|EAT04930.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 227 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + +S +L++RE + G+TS EIA + +S TV Y A KL Sbjct: 148 HRENQQAGDHQSQLWHSLSQREQQVMLAVAQGHTSREIAARYFVSDKTVTTYRSRAMTKL 207 Query: 217 DAVNRIQAIAKAIRFGYI 234 N+ + + + G + Sbjct: 208 GLGNKAELVKMIMDLGLL 225 >gi|320094467|ref|ZP_08026245.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978600|gb|EFW10165.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 243 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 44/118 (37%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 AG+ VR + + +L A + LT Sbjct: 112 AGLFDAVRTVHSGDSVISPGPTSTLLRALRAPGAPPLAAVPTPADAAADGRGILERAGLT 171 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +E L+L G T++EI + +S+ TV ++G K A +R+Q + A+R G Sbjct: 172 GKEVEILRLIARGLTNQEICDAQWVSMATVKTHVGHLLAKTGARDRVQLVLLALRAGL 229 >gi|311069668|ref|YP_003974591.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870185|gb|ADP33660.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 213 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQ G+T++EIA+ L LS ++ L S KL+ +R +A+ A Sbjct: 151 DVLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSD 210 Query: 232 GYI 234 G + Sbjct: 211 GVL 213 >gi|261211707|ref|ZP_05925994.1| tetrathionate reductase two-component response regulator [Vibrio sp. RC341] gi|260839057|gb|EEX65689.1| tetrathionate reductase two-component response regulator [Vibrio sp. RC341] Length = 200 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTER 177 G + + A + I LE + R+ S ++LT+R Sbjct: 84 TGHGDVPMAVEALKEGACDFFQKPVDGDALVKAIDHALEQSETRAEQYNMQSKLKSLTKR 143 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 E +L G ++E+A+ L +S+ T+ + + KL+ N I Sbjct: 144 ERDIAELVVKGMKNQEMADALCVSLRTIEVHRANVMKKLEVSNIAGLIR 192 >gi|257890986|ref|ZP_05670639.1| response regulator [Enterococcus faecium 1,231,410] gi|257827346|gb|EEV53972.1| response regulator [Enterococcus faecium 1,231,410] Length = 202 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + +ERE + ++ G ++EIA+ L LS TV Y+ KLD +R Q Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAI 202 >gi|227818337|ref|YP_002822308.1| hypothetical protein NGR_b00840 [Sinorhizobium fredii NGR234] gi|227337336|gb|ACP21555.1| hypothetical protein NGR_b00840 [Sinorhizobium fredii NGR234] Length = 365 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + +L+ERE L G + + IA +LG+SV T+ + +L +AI A Sbjct: 298 ARVESLSERERQVLHALVAGCSHKVIAHELGISVRTIEVHRARMMRRLGVRTLAEAIKLA 357 Query: 229 IRFG 232 I G Sbjct: 358 IISG 361 >gi|259907792|ref|YP_002648148.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae Ep1/96] gi|224963414|emb|CAX54902.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae Ep1/96] gi|283477661|emb|CAY73577.1| Nitrate/nitrite response regulator protein homolog [Erwinia pyrifoliae DSM 12163] gi|310768295|gb|ADP13245.1| Nitrate/nitrite response regulator protein NarP [Erwinia sp. Ejp617] Length = 209 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 11/124 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QVITDFLELFKK 166 + V + E ++ + L Sbjct: 83 VVLTVSALRRDFTALQEAGAEGYLLKDSDPEELLAQIIKVAEGGVAWSHRLQAPGALESW 142 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L+ G T++++AE L +S TV ++ + KL+ R+ A Sbjct: 143 KCDPLALLTVREQEVLKEVASGLTNKQVAENLAISEQTVKVHIRNVLRKLNVRTRVAATV 202 Query: 227 KAIR 230 + Sbjct: 203 LWLE 206 >gi|254500728|ref|ZP_05112879.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222436799|gb|EEE43478.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 212 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 13/155 (8%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148 + + + + + A + + V+ ++ +I Sbjct: 57 DVSMPVMNGLEAAAEVRKSFPEIAVLILSIYDNSEYVRGVVQAGARGYILKDISAPEMIT 116 Query: 149 AH-------GACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLG 199 A + L + LT+RE L G ++E+A+ LG Sbjct: 117 AISSVASGGYYFSSAVGPTLVGTATSAPIEDPYGLTDRERQVLTAIAKGLPNKEVAKSLG 176 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +SV TV ++ + K+ N Q A G + Sbjct: 177 ISVRTVESHRLNLREKVGNKNAAQLYKVAQDLGLL 211 >gi|254390702|ref|ZP_05005915.1| hypothetical protein SSCG_02977 [Streptomyces clavuligerus ATCC 27064] gi|197704402|gb|EDY50214.1| hypothetical protein SSCG_02977 [Streptomyces clavuligerus ATCC 27064] Length = 247 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TER 177 + ++ + V+ + A + R L T+R Sbjct: 126 TADGARGADAWLQEQRIDCHVIQRVLQQLVDANAGPDGAERSPHSSGTLLERGLNRVTQR 185 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L L G ++++IA LG+S+H V ++ + +KLD+ NR + K + G + Sbjct: 186 ERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGLL 242 >gi|147675130|ref|YP_001217202.1| response regulator VieA [Vibrio cholerae O395] gi|146317013|gb|ABQ21552.1| response regulator VieA [Vibrio cholerae O395] gi|227013559|gb|ACP09769.1| response regulator VieA [Vibrio cholerae O395] Length = 584 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%) Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + G + G V+ + + ++ ++++A + + EL + Sbjct: 469 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 526 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + ++ +G T++EIA +L ++ TV+ Y KL + ++ + Sbjct: 527 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 580 >gi|167646930|ref|YP_001684593.1| two component LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167349360|gb|ABZ72095.1| two component transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 207 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 12/130 (9%) Query: 116 AGIAFPV-----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 G+ PV + + A + + LE R++ Sbjct: 73 RGVTMPVVVLTGHGDVTVAVRAMKAGAVDFIEKPFEKAVLLAAIEAAFERLEDADGRAAR 132 Query: 171 ARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A + LT RE L+ G ++ IA LG+S TV + + KL + + Sbjct: 133 AADAAVAVAALTGREQDVLKGLAQGLPNKTIAYDLGISPRTVEVHRANLMSKLKVRSLSE 192 Query: 224 AIAKAIRFGY 233 A+ A G Sbjct: 193 ALRIAFSAGM 202 >gi|27375497|ref|NP_767026.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27348634|dbj|BAC45651.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 211 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 1/94 (1%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F ++ + I A+ Q + LT RE L+ G +++E Sbjct: 110 FRGSEIVGRLDEAIGAYAR-RQAENAAPKFGSLHFPGREPLTRREREVLEQFAAGASNKE 168 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LG+S T+ + + KL A N I Sbjct: 169 AGRTLGISPRTIEDHRANIMKKLGARNAADLIRI 202 >gi|116626924|ref|YP_829080.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230086|gb|ABJ88795.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE +G +++IA+ L +S TV+ Y S KL+ + + + Sbjct: 150 RAEDPLAALSPREMEVFSYLVNGLRAKDIADLLEISPKTVDTYRASLMRKLNVHDLVGLV 209 Query: 226 AKAIRFGY 233 AI Sbjct: 210 KFAIERNL 217 >gi|332991563|gb|AEF01618.1| putative regulator in two-component regulatory system [Alteromonas sp. SN2] Length = 217 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 6/140 (4%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQV 156 V + + G++ T+ +AN V + Sbjct: 70 RKLFPDVPVAVVSGTEDTQLISKIMSAGALGFIPKTASSGDIANAVQAILDGDVWLPPNL 129 Query: 157 ITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 E+ ++ S A +LT + L DG +++I L ++ TV A++ + Sbjct: 130 SDSVDEIDEEFSELADNVASLTPSQYKVLCFMRDGLLNKQIGYNLDIAEATVKAHVTAIF 189 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 KL NR QA+ A + Sbjct: 190 KKLGINNRTQAVLIASQLEL 209 >gi|323529168|ref|YP_004231320.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386170|gb|ADX58260.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 202 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE LQ G ++ +IA +L LS TV+ Y KL + I A Sbjct: 140 SLSAREVEVLQHLARGASNRDIASRLYLSDKTVSTYKSRIQEKLGVSSLAALIEFAALHK 199 Query: 233 YI 234 I Sbjct: 200 LI 201 >gi|239941886|ref|ZP_04693823.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291445336|ref|ZP_06584726.1| response regulator [Streptomyces roseosporus NRRL 15998] gi|291348283|gb|EFE75187.1| response regulator [Streptomyces roseosporus NRRL 15998] Length = 234 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN-----LT 175 L G+++ S L V + A +V+ + K ++ A LT Sbjct: 97 LRAGAAGFLLKDSAVDELIPGVRLLAAGGSALSERVVRSLPDGAGKEAAPADPPGARLLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L+L G ++EEI +L LS TV ++ S KL A NR+QA A Sbjct: 157 AREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIA 209 >gi|190576409|ref|YP_001974254.1| putative two component system response regulator [Stenotrophomonas maltophilia K279a] gi|190014331|emb|CAQ47978.1| putative two component system response regulator [Stenotrophomonas maltophilia K279a] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT ++ LQ+ G G +++IA L +S T+ A++ + KL NR QA+ A Sbjct: 146 RLRELTPQQFRVLQMLGAGRLNKQIAYDLSVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|167034135|ref|YP_001669366.1| two component LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|150014692|gb|ABR57213.1| PedR1 [Pseudomonas putida] gi|166860623|gb|ABY99030.1| two component transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ++ L+ G ++++IA L ++ TV A++ + KL+ NR+QAI A Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210 >gi|10955061|ref|NP_059717.1| hypothetical protein pTi_045 [Agrobacterium tumefaciens] gi|3064079|gb|AAC18654.1| trlR [Agrobacterium tumefaciens] Length = 212 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 8/155 (5%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L L I + +A I + I + NY + + D Sbjct: 21 LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHREWQSVYFDKKFDTLDPV 72 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + S W QE + + L +GI+ P++ S Sbjct: 73 IKRARSRKHIFTWSGEQEGPSLSKDERTFYALAADFGIRSGISIPIKTANGSMSMFTLAS 132 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 E ++ + I+A A + + R++ Sbjct: 133 EKPVIDLDREIDAVAAAATIGQIHSRISFLRTTPT 167 >gi|313206656|ref|YP_004045833.1| transcriptional regulator, luxr family [Riemerella anatipestifer DSM 15868] gi|312445972|gb|ADQ82327.1| transcriptional regulator, LuxR family [Riemerella anatipestifer DSM 15868] gi|315022153|gb|EFT35182.1| transcriptional regulator, LuxR family protein [Riemerella anatipestifer RA-YM] gi|325335902|gb|ADZ12176.1| transcriptional regulator [Riemerella anatipestifer RA-GD] Length = 252 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE + L+L+ G+T EI+EKL ++ TV + KL+ N +A+A A Sbjct: 191 KLSEREATVLELSARGFTINEISEKLFVTPDTVKFHRRKIFDKLNVQNISEALAYAKINK 250 Query: 233 YI 234 + Sbjct: 251 LV 252 >gi|303258385|ref|ZP_07344388.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|302858831|gb|EFL81919.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] Length = 205 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++LT +E +L +G +++IA++LG++ TV + KLDA N I+ Sbjct: 142 QSLTSKEKEVARLVSEGLLNKQIADELGIAERTVQTHRTMVYRKLDAKNNIE 193 >gi|299069217|emb|CBJ40477.1| transcription regulator for hrp genes expression [Ralstonia solanacearum CMR15] Length = 166 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + + L E G E + LT R+ L+ A Sbjct: 53 EAVGELPSGQLQPLTLEQTYAMLGRILDARRHGPEPRPDGGARLSALTPRQHDILREAAH 112 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ EIA+ L +SV TV +++ ++LDA NR + A Sbjct: 113 GKSNVEIAQTLHISVETVKSHVRQILMRLDARNRTELAAI 152 >gi|170695941|ref|ZP_02887080.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170139125|gb|EDT07314.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 266 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 3/101 (2%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEE 193 + ++ A + H + + D L + +AA L+ERE G + Sbjct: 165 DEIVRAIRAVARGHRYLSEAVADTLADNLDKPAAARPHEALSEREFQIFCKLAAGQIPTQ 224 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE+L LSV TV+ Y K+ N AI+ G I Sbjct: 225 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 265 >gi|158392735|dbj|BAF91145.1| DNA-binding response regulator [Pseudomonas putida] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ++ L+ G ++++IA L ++ TV A++ + KL+ NR+QAI A Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210 >gi|146294881|ref|YP_001185305.1| response regulator receiver protein [Shewanella putrefaciens CN-32] gi|145566571|gb|ABP77506.1| transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] Length = 248 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 68/240 (28%), Gaps = 17/240 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +++ L + I +K F+ + + N + Sbjct: 10 ANTASTLKEVIQAITAALKLHGFSGFWFQGVPHCAYENYHFPKETNLFSQASLRKP-NAS 68 Query: 71 TYGDDFLFHFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 + L + +++S RL A + F Sbjct: 69 VASSPVVAELQRFYLSQVAANDFNFGFSLDTSKSYMYRLSCDKGDKASLLFSKHHIQTVL 128 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---------------AARNL 174 + + I+ +H + ++ L K + + L Sbjct: 129 SWPVTWHSNRHWVGRFILLSHLSDSDILLTGLSATLKEAQNKLFECNKQLFNPFLQSSLL 188 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L + +G ++EI+ +L +S+ V ++ S K A NR I A ++ I Sbjct: 189 KDNARDILLMVANGLQNDEISTQLPISIRGVEYHMESMRRKFGATNRANLIHLAHQYELI 248 >gi|317489593|ref|ZP_07948098.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325830115|ref|ZP_08163572.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|316911325|gb|EFV32929.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325487582|gb|EGC90020.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 458 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 IF A + A V L L LT RE L L + Sbjct: 361 VCCIFLFSRRRDAPSKLHAESIADDSVRLSELSLDDAAFERYD-LTMREREVLLLLLNRL 419 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T EEIAE+L +S +TV ++G+ K +R + ++K Sbjct: 420 TYEEIAERLFISTNTVKTHVGNVYKKTGVSSRKELVSK 457 >gi|298682192|gb|ADI95259.1| PedR1 [Pseudomonas putida] gi|313499256|gb|ADR60622.1| Two component LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ++ L+ G ++++IA L ++ TV A++ + KL+ NR+QAI A Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210 >gi|295097111|emb|CBK86201.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 150 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ER+ L+L G +++EI L +S TV A+L + +LD NR QA Sbjct: 91 LSERQREVLKLLAAGESNKEIGRNLNISAATVKAHLETLFRRLDVKNRTQAAMY 144 >gi|258653900|ref|YP_003203056.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557125|gb|ACV80067.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 205 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 36/71 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 S LT RE L+L +G T++ IAE+L LS TV ++L + KL +R Sbjct: 133 ADPDLSGRLGRLTARELDVLRLVAEGRTNKWIAEQLSLSALTVKSHLARISRKLGTGDRS 192 Query: 223 QAIAKAIRFGY 233 +A A+R G Sbjct: 193 HQVAVAMRAGM 203 >gi|152985508|ref|YP_001347971.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960666|gb|ABR82691.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7] Length = 269 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 65/236 (27%), Gaps = 21/236 (8%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ + N A +++ Sbjct: 18 IERLDRADFWRSLAGTLGEFAPVDNSAALIFSNSTPLILSFMEEEREEVEPDPLISRYIT 77 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D F + ++ + + + + + + V L Sbjct: 78 GLY-RQDPFYLISRTCRHGGLYHLPDIVSEQFEATEYYNAYFSHYVVTDEVQYNVPLDHE 136 Query: 128 KNGYVIFTSEFLMLANEVII--EAHGACYQVITDFLELF------------------KKR 167 + + SE A ++ + ++ + + Sbjct: 137 RTLCLSLGSESRFGAEQIALFELLRPWVIALMKKRVHFEGALREEVGVEAKVEDMDMQAW 196 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE+ ++L DG++++EIA++L LS+ T+ + KL+ + + Sbjct: 197 KGLISPLTARESDVIRLMLDGHSNKEIADRLALSIATIKVHRRHIYAKLNVKSHSE 252 >gi|17223650|gb|AAK50368.1| response regulator [Azoarcus sp. T] Length = 218 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 28/54 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L+ RE L DG +S+EIA LG+S TV A+ G KL + + I Sbjct: 144 ESLSLREKEIFDLVVDGNSSKEIARLLGISPKTVEAHRGRLMSKLGVRSLGELI 197 >gi|28871776|ref|NP_794395.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213966768|ref|ZP_03394919.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383276|ref|ZP_07231694.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302062485|ref|ZP_07254026.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302133467|ref|ZP_07259457.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855028|gb|AAO58090.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213928618|gb|EEB62162.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|331018915|gb|EGH98971.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 77 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 39/76 (51%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +++ + S +NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ Sbjct: 1 MSTMDINFTQPSPTKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60 Query: 218 AVNRIQAIAKAIRFGY 233 N+ A +A G Sbjct: 61 VCNKTAAAVQAALSGM 76 >gi|83945712|ref|ZP_00958057.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] gi|83850913|gb|EAP88773.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] Length = 210 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++I F + LT RE L L G G + E A LGLS HT+ ++ S Sbjct: 129 IARRIIEHFRRTALVETDGGD-LTPRERDVLSLIGRGLRNAEAASALGLSEHTIAGHIKS 187 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL R +A A R G Sbjct: 188 VYSKLGISTRAEAALLASRLGL 209 >gi|115359004|ref|YP_776142.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284292|gb|ABI89808.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 227 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT R+ L+L +G ++++I L ++ T+ +L + ++ NR +A R Sbjct: 150 ERLTPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVSNRTEAALWLARH 209 >gi|26990263|ref|NP_745688.1| LuxR family DNA-binding response regulator [Pseudomonas putida KT2440] gi|148547444|ref|YP_001267546.1| response regulator receiver protein [Pseudomonas putida F1] gi|24985212|gb|AAN69152.1|AE016549_1 DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440] gi|148511502|gb|ABQ78362.1| response regulator receiver protein [Pseudomonas putida F1] Length = 210 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 120 FPVRLGFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 P+ + K G F ++ L+L + H + L L + R LT Sbjct: 87 VPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALEHAGLARQGDQALALVQAR---IDGLT 143 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE G + EIAE+LG+SV TV+ Y G +L A + + + AI G Sbjct: 144 PRERDVFVPLAQGLNNREIAEQLGISVKTVDLYRGRVMKRLQAGSLAELVGMAIACG 200 >gi|307296356|ref|ZP_07576183.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878158|gb|EFN09381.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 234 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------------LTE 176 ++ +S + V++ + + + R+ A LT+ Sbjct: 115 LLRSSTDIATMRRVLLLLREGLAVYHASLVAMLQARAPGASESLGERVALAVDKFKLLTK 174 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ L+L G ++++IA++L +S TV ++ + A NR Q +A Sbjct: 175 RQRDVLRLLAQGASNKDIAQRLNISESTVKVHVRAIMAVNGASNRTQIVA 224 >gi|300694155|ref|YP_003750128.1| transcription regulator protein, luxr family [Ralstonia solanacearum PSI07] gi|299076192|emb|CBJ35505.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] Length = 175 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +++ TD S LT R+ L+ G ++ EIA L +SV T Sbjct: 81 AMLDRALKHGAPKTDMAAASSSASKQRPALTPRQQDILREVASGKSNVEIARTLHISVET 140 Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227 V ++ ++L+A NR + +A Sbjct: 141 VKTHMQQILMRLEARNRTELVAM 163 >gi|294812712|ref|ZP_06771355.1| Response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325311|gb|EFG06954.1| Response regulator [Streptomyces clavuligerus ATCC 27064] Length = 240 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TER 177 + ++ + V+ + A + R L T+R Sbjct: 119 TADGARGADAWLQEQRIDCHVIQRVLQQLVDANAGPDGAERSPHSSGTLLERGLNRVTQR 178 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L L G ++++IA LG+S+H V ++ + +KLD+ NR + K + G + Sbjct: 179 ERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGLL 235 >gi|311739386|ref|ZP_07713221.1| DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311305202|gb|EFQ81270.1| DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 202 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 2/97 (2%) Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E + EA + + D + + LT RE + +G + +IA Sbjct: 106 DTPPEQLAEAIRRVHAGLKVIDPALAQETIFTPDNPLTTREKEVTRHVLEGSDTRQIAGH 165 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LS TV + S K NR +A A G+I Sbjct: 166 LHLSTGTVRNIVSSLIAKTGTGNRYEAATTAHARGWI 202 >gi|121594476|ref|YP_986372.1| two component LuxR family transcriptional regulator [Acidovorax sp. JS42] gi|222110849|ref|YP_002553113.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|120606556|gb|ABM42296.1| two component transcriptional regulator, LuxR family [Acidovorax sp. JS42] gi|221730293|gb|ACM33113.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 208 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Query: 148 EAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E G +++ E F R + LT RE L+ G +++IA+ LG+S Sbjct: 114 ELLGLVERMLDHAREAFADYQQAASRDALLSKLTSREAQVLERIVAGRLNKQIADDLGIS 173 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + TV A+ + KL+A + A+ Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIAL 201 >gi|172063800|ref|YP_001811451.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996317|gb|ACB67235.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 227 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L A LT R+ L+L +G ++++I L ++ T+ +L + ++ NR Sbjct: 141 LPAGDDRAFERLTPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVSNRT 200 Query: 223 QAIAKAIRF 231 +A R Sbjct: 201 EAALWLARH 209 >gi|115379306|ref|ZP_01466417.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] gi|115363688|gb|EAU62812.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] Length = 884 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT E L+ G ++ E+ E + L TV +L K+ + ++A+ A++ G Sbjct: 821 GLTPAEFEVLRYVAKGLSNAEVGEVMTLERRTVRTHLSHIYRKMGVNSHVEAVVLALKAG 880 Query: 233 YI 234 + Sbjct: 881 VV 882 >gi|150377229|ref|YP_001313824.1| two component LuxR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031776|gb|ABR63891.1| two component transcriptional regulator, LuxR family [Sinorhizobium medicae WSM419] Length = 230 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 31/74 (41%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 E + LT R+ LQL G +++EIA KL L TV ++ + L Sbjct: 147 ARVGEAPQGSHRTIEFLTPRQREVLQLLVQGLSNKEIARKLKLGEGTVKIHMAALFRSLR 206 Query: 218 AVNRIQAIAKAIRF 231 NR +A A R Sbjct: 207 VRNRQEAAAAGARL 220 >gi|229525821|ref|ZP_04415226.1| BarA-associated response regulator UvrY [Vibrio cholerae bv. albensis VL426] gi|229339402|gb|EEO04419.1| BarA-associated response regulator UvrY [Vibrio cholerae bv. albensis VL426] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGIL 209 >gi|148548821|ref|YP_001268923.1| two component LuxR family transcriptional regulator [Pseudomonas putida F1] gi|148512879|gb|ABQ79739.1| two component transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 219 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 AH Q + + K+ + NLT R+ L+L G ++ EIA LGLS+ TV Sbjct: 129 AIAHTVINQAL-RHTKQGKQSAGERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVE 187 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +L + + A+R I Sbjct: 188 THRSQIMKRLQIHDVAGLVLFAVREKII 215 >gi|311898876|dbj|BAJ31284.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 246 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A Sbjct: 180 SAYRELSGREVEVLRLVAEGQSNKAIGVAMGLSALTVKSHLARIARKLGTGDRAGMVAVA 239 Query: 229 IRFGYI 234 +R G I Sbjct: 240 LRTGII 245 >gi|307296141|ref|ZP_07575972.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878312|gb|EFN09534.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Sphingobium chlorophenolicum L-1] Length = 844 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTER 177 R + L+ +++ AHG +V+ LT R Sbjct: 728 RGFCRTAVDCGWGLTSLLSEPDLLSAAHGPAAEVLGRLRSRYGICADTAGDQPVDPLTAR 787 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E+ L L G TS+ IA+ + LS+ T ++ + KL NR A+++A R Sbjct: 788 ESEVLALLDSGLTSQAIADHIDLSLSTTKWHIQNIYNKLGVRNRSGALSRARRL 841 >gi|302527842|ref|ZP_07280184.1| predicted protein [Streptomyces sp. AA4] gi|302436737|gb|EFL08553.1| predicted protein [Streptomyces sp. AA4] Length = 340 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 4/139 (2%) Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 W+S + L + G A F R+ + G+++ + L+ ++ Sbjct: 203 WESELDAIADGRFAVLLRAVAVGAQAAASGTFRARVRDARGGWIVLQASRLVSDDDARDV 262 Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A + L AA LT RE + G ++ +IA +LG+S +TV + Sbjct: 263 AVTIRRATGGELL----DVLLAAYRLTARERDVCREVLSGLSTSDIAARLGISANTVQDH 318 Query: 209 LGSATVKLDAVNRIQAIAK 227 L S K+ +R + A+ Sbjct: 319 LKSVFGKVGVRSRGELTAR 337 >gi|238059423|ref|ZP_04604132.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881234|gb|EEP70062.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 970 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 7/144 (4%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 P + +++ + + S G L G ++E Sbjct: 824 RHHPYPAAYSRLRQAEALL--ARRSRTASAGRLLREAYQV-----AQGLGAEPLSTEIRT 876 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 LA + + + LT RE L +G T++EI ++L + Sbjct: 877 LAARARVALEERGASADGRSVTRAEPVGDELAVLTTREREVLAAVAEGLTNKEIGQRLFI 936 Query: 201 SVHTVNAYLGSATVKLDAVNRIQA 224 S T+ ++ KL R+QA Sbjct: 937 SERTIGVHVSHIFDKLQVRTRVQA 960 >gi|226309128|ref|YP_002769088.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226188245|dbj|BAH36349.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 857 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + +A LT E + L+ G T+E IA+ L LSV+T+ +L KL+ NR Sbjct: 785 RIRPQELVSAPILTPGEYTVLRELASGDTTESIADTLFLSVNTIKTHLRGIYRKLEVSNR 844 Query: 222 IQAIAKAIRFGYI 234 A+ A R G I Sbjct: 845 RDALKAARRGGLI 857 >gi|157693590|ref|YP_001488052.1| response regulator ComA [Bacillus pumilus SAFR-032] gi|194015634|ref|ZP_03054250.1| competence protein A [Bacillus pumilus ATCC 7061] gi|157682348|gb|ABV63492.1| response regulator ComA [Bacillus pumilus SAFR-032] gi|194013038|gb|EDW22604.1| competence protein A [Bacillus pumilus ATCC 7061] Length = 213 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 43/91 (47%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L EV+I+ + + + + + LTERE L+ GYT++EIA+ Sbjct: 117 HRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLILREVEKGYTNQEIADV 176 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L LS ++ L S KL+ +R +A+ A Sbjct: 177 LHLSKRSIEYSLTSIFNKLNVGSRTEAVLIA 207 >gi|153827535|ref|ZP_01980202.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|149738540|gb|EDM52895.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + +L+ERE + + G +I+E+L LS TVN+Y KL+ Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGIL 209 >gi|170736721|ref|YP_001777981.1| ATP-dependent transcription regulator LuxR [Burkholderia cenocepacia MC0-3] gi|169818909|gb|ACA93491.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia cenocepacia MC0-3] Length = 921 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 13/181 (7%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQLSVRLE 109 E H W + ES+ + Sbjct: 726 ARLLLADARANEAAQRMATVHAVLAARGFDWFAAQAAVLHAIALDHAGDESAALAAFARA 785 Query: 110 GGLLPFAGIAFP-VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE---LFK 165 G+ V G + + V + Sbjct: 786 LEYGQGNGLVRTFVDEGAAAERLLARMQKRADRFPAVGAWYLRDLARAFDAQRASGGAPA 845 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R A NL+ RE L G +++EIA L ++ T+ +L + KL+ +RIQA+ Sbjct: 846 TRPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRIQAV 905 Query: 226 A 226 Sbjct: 906 R 906 >gi|262167142|ref|ZP_06034856.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] gi|262024442|gb|EEY43129.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] Length = 265 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 44/186 (23%), Gaps = 25/186 (13%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D F ++ + + ++ V Sbjct: 67 QRYLTHAYLD-DPFYSALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVV 125 Query: 123 RLGFHKNGYVIF-TSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA--- 170 L ++ V + E I L L + + Sbjct: 126 NLDGERSIVVYLGCFKPRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQEL 185 Query: 171 ------------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 A+ L+ RE L G S+EIA+ L +S TV + +L Sbjct: 186 RTWVEQAIQSFGAQRLSPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYAQLHV 245 Query: 219 VNRIQA 224 + + Sbjct: 246 SSLSEL 251 >gi|300771307|ref|ZP_07081183.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761977|gb|EFK58797.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 209 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE LQ A G TS EIA+ L +S HTV ++ + K N I A+ + Sbjct: 145 PKITRREKEILQEAAKGLTSTEIADVLFISSHTVESHRKNLIEKFKVKNIASVIGLALEY 204 Query: 232 GYI 234 G I Sbjct: 205 GLI 207 >gi|227888678|ref|ZP_04006483.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] gi|227850765|gb|EEJ60851.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] Length = 79 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L GY++E+IA +L ++ T+ ++ + KL +R A+ A + Sbjct: 14 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 72 >gi|227015848|gb|ACP17945.1| putative two-component response regulator [Pseudomonas nitroreducens] Length = 208 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L++RE + LQ +GY+++EI+E++ +S TV+ Y +KL+A + + I A R Sbjct: 146 QRLSDREMAVLQYLANGYSNKEISEQMFISNKTVSTYKTRLLLKLNAHSLVDLIEFAKRN 205 Query: 232 GYI 234 + Sbjct: 206 ALV 208 >gi|190893145|ref|YP_001979687.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190698424|gb|ACE92509.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 305 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 + + + + +E + A + + L +LT+RE+ Sbjct: 199 ISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRF-------SLTQRESEV 251 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L G + +I E LGLS TVN +L VKL NR A KA Sbjct: 252 LLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|77163811|ref|YP_342336.1| two component transcription LuxR family regulatory protein [Nitrosococcus oceani ATCC 19707] gi|76882125|gb|ABA56806.1| two component transcription regulatory protein, LuxR family [Nitrosococcus oceani ATCC 19707] Length = 224 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q + + + ++ LT RE + L G ++ IA L +S+ TV + G Sbjct: 142 QYLREEQKEREEIIIRMMRLTPREREVMALVLKGQPNKLIASDLDISIKTVEIHRGQVMK 201 Query: 215 KLDAVNRIQAIAKAI 229 KL + I A+ Sbjct: 202 KLQVRTQADLIHLAL 216 >gi|17547174|ref|NP_520576.1| response regulator VSRC transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429476|emb|CAD16162.1| response regulator vsrc transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 20/186 (10%) Query: 48 QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + + L + D + E V ++ ++ Sbjct: 52 RPDVVLLDVWLSDCTGFDAMRELRGKLPEARFAFMS------AENTPEIVAKAQALGAIG 105 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G + V IF + + + + A+G Sbjct: 106 FIGKHADAHAFSQAVAG--------IFGGDSSFPSEDDLGMANGKNGASHGI------PI 151 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L RIQ I++ Sbjct: 152 TPAELGLTPRQGSVLALLLEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISR 211 Query: 228 AIRFGY 233 RF Sbjct: 212 MERFRL 217 >gi|117922439|ref|YP_871631.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117614771|gb|ABK50225.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 248 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 17/240 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S++ L + I +K F+ + E + + + Sbjct: 10 ASTVSTLKDVIQGISTSLKLHGFSGFWFQGIPHCAYENYHFPEDTSLFSP-IALRKPIAS 68 Query: 71 TYGDDFLFHFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF--------- 120 + L + +++S RL A F Sbjct: 69 VASSPIVAQLQRFYLNQVAANDTNFGLSLDTSKPYVYRLTNEKDTKACALFQKHNIQTVL 128 Query: 121 --PV--RLGF--HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 P+ ++ + + + + + + + + + L Sbjct: 129 SWPIVCHDQCRWTGRFMLLSQQSYSEIVLDGLADVLKEAQYKLFECNKPMFNPFLQSSLL 188 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQ+ +G ++EI+ +L +SV V ++ S K A NR I A ++ I Sbjct: 189 KENARDILQMVANGLQNDEISTQLPISVRGVEYHMESMRKKFGAANRANLIHLAHQYELI 248 >gi|332666175|ref|YP_004448963.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332334989|gb|AEE52090.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ RS +T RE L+L D ++EIA KL +S TV ++ S K Sbjct: 140 LLDGMQSKKPSRSQYIPKITRREKEILRLIIDECNTDEIAAKLFISDTTVISHRKSLLRK 199 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L+ N + A F + Sbjct: 200 LNVKNTAGLVRVAYEFNLL 218 >gi|331694577|ref|YP_004330816.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949266|gb|AEA22963.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 748 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 30/70 (42%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R+ LT RE L G T+ EIA +L LSV TV ++ A K+ R Q Sbjct: 674 DPWRAGPGAGLTRREREIAALVATGMTNREIAGRLQLSVRTVEVHVDHALTKVGLRTRTQ 733 Query: 224 AIAKAIRFGY 233 A + G Sbjct: 734 LAAWLHQDGL 743 >gi|300313654|ref|YP_003777746.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076439|gb|ADJ65838.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 485 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L+ERE L+ G +++E A + +S TV ++ S KL R A K + Sbjct: 421 PRRLLSEREAEVLRRISLGESNKEAARAMQISPSTVRTHVESIFRKLQCSTRAAATLKGL 480 Query: 230 RFGYI 234 G I Sbjct: 481 SLGLI 485 >gi|299068182|emb|CBJ39401.1| response regulator, LuxR family [Ralstonia solanacearum CMR15] Length = 210 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L++RE G + IAE+L LSV TV+ Y K+ + A Sbjct: 144 PLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYA 203 Query: 229 IRFGYI 234 I+ G + Sbjct: 204 IKNGLV 209 >gi|269126467|ref|YP_003299837.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311425|gb|ACY97799.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 232 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 33/105 (31%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + +LA V LT RE L G+G Sbjct: 111 EAVRTVAAGEGILAPAVTRRLIREFAARPGRPAAPLASPPPGPAELTPRERQVLGCLGEG 170 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ +IA +L ++ T ++ KL +R+QA A Sbjct: 171 LSNAQIAARLNMAETTAKTHVSRILAKLGLRSRVQAAILAQELAL 215 >gi|269102848|ref|ZP_06155545.1| BarA-associated response regulator UvrY [Photobacterium damselae subsp. damselae CIP 102761] gi|268162746|gb|EEZ41242.1| BarA-associated response regulator UvrY [Photobacterium damselae subsp. damselae CIP 102761] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + ++L+ERE + + G +I+E+L LS TVN+Y KLD Sbjct: 133 MALSQFASNSENPFKDLSERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFNKLD 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 ISGDVELTHLAIRHGML 209 >gi|288550286|ref|ZP_05969857.2| putative HTH-type transcriptional regulator YhjB [Enterobacter cancerogenus ATCC 35316] gi|288315914|gb|EFC54852.1| putative HTH-type transcriptional regulator YhjB [Enterobacter cancerogenus ATCC 35316] Length = 199 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + L++R+ L+L G +++EI L +S TV A+L + +LD NR Sbjct: 129 LQPQPQQELSALSDRQHDVLKLLAAGESNKEIGRSLNISAATVKAHLETVFRRLDVKNRT 188 Query: 223 QAIAKAIRF 231 QA R Sbjct: 189 QAAMIYTRM 197 >gi|209516384|ref|ZP_03265240.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209503146|gb|EEA03146.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 259 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL+ R+ ++L G+T++ IA +LG++ TV +L L NR AI A+ Sbjct: 193 ENLSPRQQDIMRLVHRGWTNKMIARELGVAEGTVKVHLSVIFRALGVHNRSTAI--AVIN 250 Query: 232 GYI 234 G++ Sbjct: 251 GWL 253 >gi|326330391|ref|ZP_08196700.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|326330396|ref|ZP_08196704.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951671|gb|EGD43703.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951817|gb|EGD43848.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 322 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + LT RE L+L G T+ +IA L LS TV +++ KL A Sbjct: 243 RRRATPESVMTTTSGLTSRELGVLRLIATGATNTQIASALVLSESTVKSHVKHILHKLPA 302 Query: 219 VNRIQAIAK 227 NR +A+ + Sbjct: 303 ANRAEAVFR 311 >gi|307325178|ref|ZP_07604382.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889324|gb|EFN20306.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 35/82 (42%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + R L+ RE L+L +G +++ I +GLS TV ++L Sbjct: 137 AAARMHRRPPGAPGHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARI 196 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R +A A+R G I Sbjct: 197 ARKLGTGDRAGMVAVALRTGII 218 >gi|295835904|ref|ZP_06822837.1| two-component system response regulator [Streptomyces sp. SPB74] gi|333023773|ref|ZP_08451837.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|295825771|gb|EFG64471.1| two-component system response regulator [Streptomyces sp. SPB74] gi|332743625|gb|EGJ74066.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215 Query: 232 GYI 234 G I Sbjct: 216 GII 218 >gi|239831042|ref|ZP_04679371.1| Monoamine regulon transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823309|gb|EEQ94877.1| Monoamine regulon transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 241 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + K R Sbjct: 173 GELLTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRTEVACKLHR 232 Query: 231 F 231 Sbjct: 233 M 233 >gi|218258057|ref|ZP_03474484.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii DSM 18315] gi|218225776|gb|EEC98426.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii DSM 18315] Length = 202 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ RE + G T+ EIA++L LS HTV + + KL + AI Sbjct: 133 QTLSAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVN 192 Query: 232 GYI 234 + Sbjct: 193 KLV 195 >gi|261406784|ref|YP_003243025.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283247|gb|ACX65218.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 216 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 6/107 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERE 178 G FTS+ ++ + I + L + + + NLT RE Sbjct: 99 GASGYLLKDFTSQKIIASIREAIRGELMLPSKVAAKLAARLRTTGVPQFPVQNYNLTPRE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L + + EIA+ L ++ TV Y+ K+ +R +AI Sbjct: 159 LQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205 >gi|163754119|ref|ZP_02161242.1| transcriptional regulator, LuxR family protein [Kordia algicida OT-1] gi|161326333|gb|EDP97659.1| transcriptional regulator, LuxR family protein [Kordia algicida OT-1] Length = 212 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ L+ +K S T+RE L+L +T+ EI+ KL ++ TV + + Sbjct: 133 KVLNVLLDAVRKPKSKTIQFTKREKDVLRLIVGDHTTSEISAKLNIANSTVETHRRNLIE 192 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 K + + + A+ GY+ Sbjct: 193 KTGVKSSLGLVRYAVENGYL 212 >gi|53719635|ref|YP_108621.1| putative two component regulatory system response regulator [Burkholderia pseudomallei K96243] gi|254297922|ref|ZP_04965375.1| capsular synthesis regulator component B [Burkholderia pseudomallei 406e] gi|52210049|emb|CAH36023.1| putative two component regulatory system, response regulator [Burkholderia pseudomallei K96243] gi|157806813|gb|EDO83983.1| capsular synthesis regulator component B [Burkholderia pseudomallei 406e] Length = 206 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 14/184 (7%) Query: 65 PNILIETYGDDFLFHFNSGLLP---IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 ++ D P +I E + + G I Sbjct: 23 DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAADGLAMLTAIRDGYPSVRVIVLT 82 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSA 170 + + +L+ ++ + + + A Sbjct: 83 MLDNPVLMHTMRQAGALAVLSKRGDLDELPRALAAVYQGRPFVGTHAGAAGGGAMRGTDA 142 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L+ RE ++L G T +IA + G S+ TV+ + +A KL + + A Sbjct: 143 PRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 202 Query: 231 FGYI 234 G + Sbjct: 203 NGLV 206 >gi|330504010|ref|YP_004380879.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918296|gb|AEB59127.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 203 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT R+ L+L +G ++ I+ +LGL+ TV +L + L R ++ Sbjct: 137 PSSPSPLTPRQLEILRLLAEGLPNKVISRQLGLAEDTVKTHLKALFETLAVHTRTACVSA 196 Query: 228 AIRFGYI 234 A + G++ Sbjct: 197 ARQRGWL 203 >gi|302553937|ref|ZP_07306279.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471555|gb|EFL34648.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 204 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A DG T+ E+A L LS TV YL +A KL NR +A+ A Sbjct: 141 ANPLTDREREVLRAASDGSTNAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARE 200 Query: 231 FGYI 234 G++ Sbjct: 201 KGWL 204 >gi|256396740|ref|YP_003118304.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362966|gb|ACU76463.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 314 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 15/226 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ L + L + A+ ++ + + D D Sbjct: 104 EQLFGLDAVQSELEQL-----LAGAAVEVLSMVPGSAVPAATLKAAESLDQDMTRRVRSR 158 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 I + I + E E SV ++ P++ Sbjct: 159 ILYHS-----TVRQDPTTIAYGRWMAEQGSEVRLSPSVTRRLLIVDGKTAVVPIKPNEAS 213 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G + L+ + E + + L+ + L+L DG Sbjct: 214 VGALCVREPGLIDQLTALFELIWTEAVPLGMPAKAESPA-----GLSPTDRHLLRLLADG 268 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E A++LG+S TV + +L A +R +A +A R G++ Sbjct: 269 LTDEAAAKRLGISARTVRRIMADLMDRLGAESRFEAGVEAARRGWL 314 >gi|171058257|ref|YP_001790606.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775702|gb|ACB33841.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 219 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L+L G ++++I+ L ++ T+ ++ +LD +R Q + A R G Sbjct: 155 GLTPRQLDVLRLMALGQSNKQISRALSVAESTIKTHVAVVFRRLDVTSRSQVMVAAARMG 214 Query: 233 Y 233 Sbjct: 215 L 215 >gi|83593935|ref|YP_427687.1| two component LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576849|gb|ABC23400.1| two component transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 226 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +LT R+ L L G ++ EI +LGL++ TV ++ LDA NR Q Sbjct: 156 DFDDNPRLSDLTRRQREVLALMSQGLSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQ 215 Query: 224 AIAKAI 229 A+ A Sbjct: 216 AVLMAR 221 >gi|17545011|ref|NP_518413.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|207727731|ref|YP_002256125.1| response regulator protein [Ralstonia solanacearum MolK2] gi|17427301|emb|CAD13820.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|206590972|emb|CAQ56584.1| response regulator protein [Ralstonia solanacearum MolK2] Length = 210 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L++RE G + IAE+L LSV TV+ Y K+ + A Sbjct: 144 PLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYA 203 Query: 229 IRFGYI 234 I+ G + Sbjct: 204 IKNGLV 209 >gi|326441134|ref|ZP_08215868.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] Length = 219 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TER 177 + ++ + V+ + A + R L T+R Sbjct: 98 TADGARGADAWLQEQRIDCHVIQRVLQQLVDANAGPDGAERSPHSSGTLLERGLNRVTQR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L L G ++++IA LG+S+H V ++ + +KLD+ NR + K + G + Sbjct: 158 ERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGLL 214 >gi|218530213|ref|YP_002421029.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218522516|gb|ACK83101.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 235 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 46/139 (33%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 G+ +R+ A + + +V + + V+ A GA Sbjct: 75 RIAALREGRPWLRVLAVFRTLDASAMHRLIAAGADAFVGCGTPADEVCASVLALAKGAPP 134 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 A LT RE L+ G++++E+A +L LSV TV + + Sbjct: 135 APSAAASSACPSAEDPAIGLTPREAEVLRFLSAGFSNKEVARRLSLSVRTVETHRLNLRR 194 Query: 215 KLDAVNRIQAIAKAIRFGY 233 K + A + G Sbjct: 195 KTQTGRLKDLVTLARQLGL 213 >gi|107027364|ref|YP_624875.1| ATP-dependent transcription regulator LuxR [Burkholderia cenocepacia AU 1054] gi|116693926|ref|YP_839459.1| ATP-dependent transcription regulator LuxR [Burkholderia cenocepacia HI2424] gi|105896738|gb|ABF79902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia cenocepacia AU 1054] gi|116651926|gb|ABK12566.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia cenocepacia HI2424] Length = 921 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 13/181 (7%) Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQLSVRLE 109 E H W + ES+ + Sbjct: 726 ARLLLADARANEAAQRMATVHAVLAARGFDWFAAQAAVLHAIALDHAGDESAALAAFARA 785 Query: 110 GGLLPFAGIAFP-VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE---LFK 165 G+ V G + + V + Sbjct: 786 LEYGQGNGLVRTFVDEGAAAERLLARMQKRADRFPAVGAWYLRDLARAFDAQRASGGAPA 845 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R A NL+ RE L G +++EIA L ++ T+ +L + KL+ +RIQA+ Sbjct: 846 TRPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRIQAV 905 Query: 226 A 226 Sbjct: 906 R 906 >gi|325927296|ref|ZP_08188550.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325542297|gb|EGD13785.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 200 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 5/98 (5%) Query: 140 MLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 E +++A ++ VI L L A L+ERE + L+LAG+G ++ EIA+ Sbjct: 105 DAPAEQLVDALRQVHRGGRVIDPQLALDAWVE--ADPLSERERTVLRLAGEGRSASEIAQ 162 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L LS TV YL KL NRI+A A + G++ Sbjct: 163 QLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|308178436|ref|YP_003917842.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745899|emb|CBT76871.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A R L+ER+ S +L G T+ +IA +S +V +L +LD NR+Q A Sbjct: 149 AVRKLSERDRSLARLVAAGLTNSQIARIAHISEGSVKLHLARIMEELDVTNRVQLAVIAT 208 Query: 230 RFGYI 234 G + Sbjct: 209 ESGLV 213 >gi|145580560|pdb|2UV0|E Chain E, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain Bound To Its Autoinducer gi|145580561|pdb|2UV0|F Chain F, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain Bound To Its Autoinducer gi|145580562|pdb|2UV0|G Chain G, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain Bound To Its Autoinducer gi|145580563|pdb|2UV0|H Chain H, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain Bound To Its Autoinducer Length = 175 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 11/174 (6%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L ++SS E S L + + + + + NY Sbjct: 5 LVDGFLELERSSGKLEWSAILQKXASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 61 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + + D + H +LPI W + G+ Sbjct: 62 WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTX 118 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 P+ + G + + + E EA+ V+ L + L Sbjct: 119 PLHGARGELGALSLS-----VEAENRAEANRFXESVLPTLWXLKDYALQSGAGL 167 >gi|329944915|ref|ZP_08292942.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529726|gb|EGF56622.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 244 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G T++EI ++ LS+ TV ++ K +R+Q + A+R G Sbjct: 174 ALTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTGCRDRVQLVLLALRGG 233 Query: 233 YI 234 + Sbjct: 234 VV 235 >gi|300692737|ref|YP_003753732.1| response regulator, LuxR family [Ralstonia solanacearum PSI07] gi|299079797|emb|CBJ52474.1| response regulator, LuxR family [Ralstonia solanacearum PSI07] Length = 210 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L++RE G + IAE+L LSV TV+ Y K+ + A Sbjct: 144 PLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYA 203 Query: 229 IRFGYI 234 I+ G + Sbjct: 204 IKNGLV 209 >gi|188584049|ref|YP_001927494.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347547|gb|ACB82959.1| two component transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 263 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 5/109 (4%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQV-----ITDFLELFKKRSSAARNLTERETSCLQLA 185 + ++ +L + A V + L + ++ +L+ RE + L+ Sbjct: 115 LEVVIADCAVLPMSFLGRLCLAAEPVRAPGPVAALTGLQRADGTSLSSLSSREVNILEGL 174 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++ IA L ++ TV ++ + K+ NR QA A+ G + Sbjct: 175 ALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGIV 223 >gi|89900331|ref|YP_522802.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345068|gb|ABD69271.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 230 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 2/115 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTERET 179 +R+G L+ A + + H K L+ RE Sbjct: 93 LRMGASGYVLKGSAVSDLLSAVDAAVRGKKHLGAEVADLALQVFTLKDEDPLSTLSPREQ 152 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + G +S +I +L LS TV Y KL + + A+R I Sbjct: 153 QIIIMVVKGASSSQIGTQLHLSPKTVATYRSRLMAKLGVRDVPGLVRLAVRHKLI 207 >gi|311694458|gb|ADP97331.1| two component transcriptional regulator, LuxR family [marine bacterium HP15] Length = 220 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A + + S L+ERE + D ++I++KL LS TVN+Y Sbjct: 130 AQKMALKQLGGGDRDEDGELSLFDRLSEREMQIAMMVVDCQKVQDISDKLCLSPKTVNSY 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KL+ + ++ A+R G + Sbjct: 190 RYRIFEKLEISSDVELALMAVRLGLL 215 >gi|237880801|gb|ACR33059.1| response regulator [Actinoplanes garbadinensis] Length = 220 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T RE L G + EIA +L L+ TV ++G KL +R+ + A R Sbjct: 157 DTFTARERDVFDLIVAGANNAEIAARLHLAEVTVKTHVGRVLAKLGVRDRLNVVVWAYRN 216 Query: 232 G 232 G Sbjct: 217 G 217 >gi|229171880|ref|ZP_04299449.1| hypothetical protein bcere0006_9970 [Bacillus cereus MM3] gi|228611590|gb|EEK68843.1| hypothetical protein bcere0006_9970 [Bacillus cereus MM3] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 36/88 (40%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + Q + +K + LT+RE L G T++ IA L LS ++ Sbjct: 129 LFRQLRIQQFSAKSVLQSEKTNELPITLTQREREVLIFVQQGMTNKNIAVTLNLSQRSIE 188 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L KL +R++A+ KA G + Sbjct: 189 YTLTELFNKLRVSSRVEAVEKAKSLGIL 216 >gi|182437087|ref|YP_001824806.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465603|dbj|BAG20123.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 8/107 (7%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 V +L + A ++ L LTERE L G Sbjct: 111 GVRAVGAGGAYLSPRVAGRVIAGMRAHRAAHPHRSLA--------RLTEREREVLAGLGA 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA +L L TV A++ + KL A NR++A A + Sbjct: 163 GLSNAEIASRLHLVEGTVKAHVSAVLAKLGARNRVEAAIAAYEADLV 209 >gi|149926201|ref|ZP_01914463.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825019|gb|EDM84231.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 228 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 29/61 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G EIAE L +S T++AY KL+ + +Q + AI G Sbjct: 166 QLTRRERQVLTLIAQGRPRREIAELLKVSPRTIDAYRARLLQKLNLDSSVQLVKYAISAG 225 Query: 233 Y 233 Sbjct: 226 M 226 >gi|170726983|ref|YP_001761009.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812330|gb|ACA86914.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 213 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 15/131 (11%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-----------VITDFLE 162 + F V I + E +IE Q ++ L Sbjct: 81 VIFTVSDSESDVLQAIKFNTDGYLLKDSEPEELIEKINLAIQGEFVISAPLTKILARSLR 140 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 K SS NLT+RE L+L G ++++IA LG++ TV ++ + KL +R+ Sbjct: 141 PESKASSPLENLTQRELQNLKLIASGKSNKDIANTLGIAETTVKVHVKNLLKKLGLKSRV 200 Query: 223 QAIAKAIRFGY 233 +A A+ Sbjct: 201 EAAVWAVEHKI 211 >gi|146306971|ref|YP_001187436.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575172|gb|ABP84704.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 221 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT ++ L+ G ++++IA L ++ TV A++ + KL+ NR+QAI A Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYSLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210 >gi|49477103|ref|YP_035372.1| two-component response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328659|gb|AAT59305.1| two-component response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 219 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 36/88 (40%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + Q + +K + LT+RE L G T++ IA L LS ++ Sbjct: 127 LFRQLRIQQFSAKSVLQSEKTNELPITLTQREREVLIFVQQGMTNKNIAVTLNLSQRSIE 186 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L KL +R++A+ KA G + Sbjct: 187 YTLTELFNKLRVSSRVEAVEKAKSLGIL 214 >gi|332669837|ref|YP_004452845.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338875|gb|AEE45458.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 222 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 34/71 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + LTERE + G G ++ EIA L L V TV ++G+ KLDA NR Sbjct: 148 RPRERARALLATLTEREREVAEAVGAGMSNAEIARTLHLGVATVKTHVGNVLAKLDATNR 207 Query: 222 IQAIAKAIRFG 232 +Q G Sbjct: 208 VQIARWVHEAG 218 >gi|332292518|ref|YP_004431127.1| two component transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] gi|332170604|gb|AEE19859.1| two component transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] Length = 212 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L+ RE L L +G ++EIA +L ++ TV+ Y KL+A N + I A Sbjct: 148 KKLSSREIEVLNLLSNGKRNKEIAAELDINEKTVSTYKMRLLKKLEAQNVAELIKHAR 205 >gi|320534446|ref|ZP_08034923.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133339|gb|EFW25810.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 244 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G T++EI ++ LS+ TV ++ K +R+Q + A+R G Sbjct: 174 GLTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTGCRDRVQLVLLALRGG 233 Query: 233 YI 234 + Sbjct: 234 VV 235 >gi|296876462|ref|ZP_06900513.1| LuxR family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432455|gb|EFH18251.1| LuxR family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 323 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L L + ++EIA++L LSV TV ++ + +KL+ R Q Sbjct: 259 LTEREKEILPLLLEHKNNQEIADQLFLSVGTVKTHVHNIFIKLEITKRNQL 309 >gi|326777702|ref|ZP_08236967.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326658035|gb|EGE42881.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 G + RS A LTERE L G G ++ EIA +L L TV Sbjct: 136 ARVAGRVIAGMRAHRAAHPHRSLA--RLTEREREVLAGLGAGLSNAEIASRLHLVEGTVK 193 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A++ + KL A NR++A A + Sbjct: 194 AHVSAVLAKLGARNRVEAAIAAYEADLV 221 >gi|229817720|ref|ZP_04448002.1| hypothetical protein BIFANG_02992 [Bifidobacterium angulatum DSM 20098] gi|229785509|gb|EEP21623.1| hypothetical protein BIFANG_02992 [Bifidobacterium angulatum DSM 20098] Length = 225 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + ++A L+ERE +L G + +IA +L LS TV + KL NR Q Sbjct: 156 DGELANALATLSERERDVARLVAQGLDNRQIAAQLFLSEGTVRNRISDILDKLALTNRTQ 215 Query: 224 AIA 226 Sbjct: 216 LAI 218 >gi|254425747|ref|ZP_05039464.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188170|gb|EDX83135.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 212 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +ERE L+ G G + EIA L L+ T+ +L + +LD +R QA A + Sbjct: 153 SERELDILKQLGQGKRNREIAANLNLTEGTIKNHLTNIFCQLDVRDRTQAALWAHQH 209 >gi|197295540|ref|YP_002154081.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195945019|emb|CAR57642.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++ G +++IA ++GLS TV + G A K+ A + + A G Sbjct: 150 LTPREREVMKYVVSGLLNKQIAAEMGLSEITVKIHRGHAMRKMGARTLPEFVLGAQALGL 209 >gi|111020359|ref|YP_703331.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819889|gb|ABG95173.1| protein kinase/ transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 1079 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A + + + + + T+RE L +G T++EIA +L +S T ++ Sbjct: 995 AAVAYALGEQVSPSPTSAGPSPTPTKREREVAALIAEGLTNKEIAARLVISPRTAQGHVE 1054 Query: 211 SATVKLDAVNRIQAIAKAIR 230 KL +R Q A + Sbjct: 1055 HLLTKLGFNSRAQIAAWVVE 1074 >gi|134292666|ref|YP_001116402.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135823|gb|ABO56937.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 214 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++ G +++IA ++GLS TV + G A K+ A + + A G Sbjct: 150 LTPREREVMKYVVSGLLNKQIAAEMGLSEITVKIHRGHAMRKMGARTLPEFVLGAQALGL 209 >gi|329849532|ref|ZP_08264378.1| response regulator [Asticcacaulis biprosthecum C19] gi|328841443|gb|EGF91013.1| response regulator [Asticcacaulis biprosthecum C19] Length = 236 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFK-----KR 167 A + +R G TSE L+ + + + L++ Sbjct: 102 DRASVLKTLRAGADGYVLKDATSEHLVSYVRSALAGVNPISSRAARHLLKISDEGEAQPV 161 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S+ L RE L+ G + + +A + LS HTV Y + KL +R A+ + Sbjct: 162 TSSHPPLRPREKEMLEHIAQGLSQKAVARLMNLSPHTVAEYTQNIYRKLSVKSRGAAVFE 221 Query: 228 AIRFGYI 234 AI+ I Sbjct: 222 AIQHKLI 228 >gi|302537555|ref|ZP_07289897.1| two-component system response regulator [Streptomyces sp. C] gi|302446450|gb|EFL18266.1| two-component system response regulator [Streptomyces sp. C] Length = 220 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 41/103 (39%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V T + L GA + R L+ RE L+L +G ++ Sbjct: 117 VTGTRTNIGLPTRPGAAPIGAAAARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSN 176 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + I +GLS TV ++L KL +R +A A+R G I Sbjct: 177 KAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|145297176|ref|YP_001140017.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142849948|gb|ABO88269.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 207 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +L++RE G +++EIA + LS T++ Y KL N ++ I A R Sbjct: 146 SLSDREMRVFLSLCKGCSNKEIANNMLLSEKTISTYKSRVMRKLQVNNMVELIDLAKR 203 >gi|313682018|ref|YP_004059756.1| transcriptional regulator, luxr family [Sulfuricurvum kujiense DSM 16994] gi|313154878|gb|ADR33556.1| transcriptional regulator, LuxR family [Sulfuricurvum kujiense DSM 16994] Length = 206 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + G ++ +IA+ + ++ TV A+L S KL +R+ Sbjct: 144 EKLSEREQEIGRYVAQGLSNYQIAQTIEITERTVKAHLLSCYKKLGLNDRVSLALW 199 >gi|309792094|ref|ZP_07686568.1| two-component system response regulator [Oscillochloris trichoides DG6] gi|308225901|gb|EFO79655.1| two-component system response regulator [Oscillochloris trichoides DG6] Length = 215 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +++E+AE + ++ TV +++ S KL NR+QA+ A+R G I Sbjct: 153 TPRELDVLRLMATSRSNKEMAEAMTVTEETVRSHIKSILNKLRQPNRMQAVLMALRLGII 212 >gi|289642935|ref|ZP_06475069.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507240|gb|EFD28205.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia symbiont of Datisca glomerata] Length = 1188 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +E +A L+ RE + L T+ EIA ++ +SV+TV +L S KLD Sbjct: 1114 AVEPAGPLPAAFEPLSGREQAVLSYLPTMLTTAEIASEMFVSVNTVKTHLKSIYRKLDVA 1173 Query: 220 NRIQAIAKAIRFGYI 234 R A+ +A + Sbjct: 1174 RRRDAVHRARALHLL 1188 >gi|241661775|ref|YP_002980135.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|240863802|gb|ACS61463.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 210 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L++RE G + IAE+L LSV TV+ Y K+ + A Sbjct: 144 PLHQTLSKREFQIFCKLARGQSVSVIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYA 203 Query: 229 IRFGYI 234 I+ G + Sbjct: 204 IKNGLV 209 >gi|89901852|ref|YP_524323.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346589|gb|ABD70792.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 201 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 11/156 (7%) Query: 88 IWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG--FHKNGYVIFTSEFLMLA 142 W+ + S +L L I + ++ +F+ Sbjct: 46 DWRGCVVVDIRMPGMSGLELQRCLRERGPSLPVIVITAHGDVAAARQAFLADAVDFIEKP 105 Query: 143 NE--VIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ++ A + + L+ RE + L G + IAE Sbjct: 106 FDGKQLLGAIENALSGFRALDIAQARAAFTKPTLGQLSIREREVMTLMVKGLHNRRIAET 165 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LG+S TV + KL A N + + + G Sbjct: 166 LGISPRTVEVHKARVMEKLGAQNIVDLVRL-VDKGL 200 >gi|27366323|ref|NP_761851.1| response regulator [Vibrio vulnificus CMCP6] gi|37679417|ref|NP_934026.1| response regulator [Vibrio vulnificus YJ016] gi|320156831|ref|YP_004189210.1| barA-associated response regulator UvrY (GacA SirA) [Vibrio vulnificus MO6-24/O] gi|27362524|gb|AAO11378.1| BarA-associated response regulator UvrY (= GacA = SirA) [Vibrio vulnificus CMCP6] gi|37198160|dbj|BAC93997.1| response regulator [Vibrio vulnificus YJ016] gi|319932143|gb|ADV87007.1| barA-associated response regulator UvrY (GacA SirA) [Vibrio vulnificus MO6-24/O] Length = 214 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + ++L+ERE + + G +I+E+L LS TVN+Y KL Sbjct: 133 MALSQFSPASENPFKDLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLS 192 Query: 218 AVNRIQAIAKAIRFGYI 234 ++ AIR G + Sbjct: 193 INGDVELTHLAIRHGML 209 >gi|332140807|ref|YP_004426545.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas macleodii str. 'Deep ecotype'] gi|327550829|gb|AEA97547.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas macleodii str. 'Deep ecotype'] Length = 222 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 32/57 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ + LT + L++ DG +++IA +L +S TV ++ + KL +NR +A Sbjct: 155 TARLKQLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVLRKLGVINRTKA 211 >gi|254561165|ref|YP_003068260.1| response regulator [Methylobacterium extorquens DM4] gi|254268443|emb|CAX24400.1| putative Response regulator, CheY-like and LuxR domain [Methylobacterium extorquens DM4] Length = 235 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 45/140 (32%) Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 G+ +R+ A + + +V + + V+ A GA Sbjct: 74 ARIAALREGRPWLRVLAVFRTLDAPAMHRLIAAGADAFVGCGTPADEVCASVLALAKGAP 133 Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LT RE L+ G++++E+A +L LSV TV + + Sbjct: 134 PVPSAAASSACPPTEDPTIGLTPREAEVLRFLSAGFSNKEVARRLSLSVRTVETHRLNLR 193 Query: 214 VKLDAVNRIQAIAKAIRFGY 233 K + A + G Sbjct: 194 RKTQTGRLKDLVTLARQLGL 213 >gi|288940382|ref|YP_003442622.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895754|gb|ADC61590.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 208 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 12/134 (8%) Query: 108 LEGGLLPFAGIAFPVRL--GFHKNGYVIFTSEFLMLAN------EVIIEAHGACYQVITD 159 L G PV L G + + + + + Sbjct: 67 ELQAYLAREGFRIPVILITGHGDVAMAVRAMKAGAMDFIEKPFHDEDLLRSLRNALDHDQ 126 Query: 160 FLELFK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + LT RE + + DG +++EIA LG+S TV A+ K Sbjct: 127 KTRANRLARADIAMRLAELTPREHEVMAMVTDGKSNKEIAAALGVSAKTVEAHRARVMEK 186 Query: 216 LDAVNRIQAIAKAI 229 + A + + + A+ Sbjct: 187 MRAESLAELVRMAL 200 >gi|218675798|ref|YP_002394617.1| Transcriptional regulator, LuxR family [Vibrio splendidus LGP32] gi|218324066|emb|CAV25193.1| Transcriptional regulator, LuxR family [Vibrio splendidus LGP32] Length = 260 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S + LT RE+ L L G + IA L +S+ TV ++ K DA ++ Q Sbjct: 172 PRISKLKKRLTSRESEVLFLLLFGKKPQYIASTLNISIKTVEGHVARLKQKFDARSKSQL 231 Query: 225 IAKAIRFGY 233 I A+ G Sbjct: 232 IEYALDSGL 240 >gi|170699404|ref|ZP_02890449.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170135660|gb|EDT03943.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 227 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L A LT R+ L+L +G ++++I L ++ T+ +L + ++ NR Sbjct: 141 LPAGDDRAFERLTPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVSNRT 200 Query: 223 QAIAKAIRF 231 +A R Sbjct: 201 EAALWLARH 209 >gi|153828389|ref|ZP_01981056.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|148876098|gb|EDL74233.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] Length = 267 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 52/230 (22%), Gaps = 27/230 (11%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 L + I +F I L L D F Sbjct: 27 SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137 ++ + + ++ V L + V + Sbjct: 84 ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143 Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174 E I L L + + A+ L Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRIWVEQAIQSFGAQRL 203 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RE L G S+EIAE L +S TV + V+L + + Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYVQLHVSSLSEL 253 >gi|16263297|ref|NP_436090.1| Response regulator [Sinorhizobium meliloti 1021] gi|307304384|ref|ZP_07584135.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318091|ref|ZP_07597527.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|14523975|gb|AAK65502.1| Response regulator [Sinorhizobium meliloti 1021] gi|306896132|gb|EFN26882.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306902586|gb|EFN33180.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 227 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT R+ LQL G++++EIA KL L TV ++ + L NR +A A Sbjct: 155 RHRTIEFLTPRQREVLQLLVQGFSNKEIARKLKLGEGTVKIHMAALFRSLRVRNRQEAAA 214 Query: 227 KAIRF 231 R Sbjct: 215 AGARL 219 >gi|328947071|ref|YP_004364408.1| LuxR family transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328447395|gb|AEB13111.1| two component transcriptional regulator, LuxR family [Treponema succinifaciens DSM 2489] Length = 232 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE +L T+++IA++L ++ TV ++ K +R + Sbjct: 174 GLSSREIEIAELLLKNQTNKQIAKELFIATSTVATHIQHIYEKFGVKSRSE 224 >gi|253987570|ref|YP_003038926.1| LuxR family two component transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779020|emb|CAQ82180.1| two component transcriptional regulator, luxr family [Photorhabdus asymbiotica] Length = 209 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + +++IE + ++ L++RE+ +++ +G TS++IA+ Sbjct: 108 PIDADLLIETVSNALSFHQKIFKQHQVYEQLKVKFSQLSDRESEVMKIILEGKTSKQIAQ 167 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L LS T+ + + KLD + Q + Sbjct: 168 QLALSPRTIEVHRANIFHKLDIHSLPQLV 196 >gi|209515667|ref|ZP_03264531.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209503903|gb|EEA03895.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 489 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 34/82 (41%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 V + A +L+ RET L+ G +++EIA +L LS TV ++ S Sbjct: 408 ALIVSGPTARGRTRSRQQAASLSARETDVLRAISLGASNKEIARELTLSPSTVRTHVESV 467 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL R A K G + Sbjct: 468 FRKLGCSTRAAATLKGSTMGLL 489 >gi|170704032|ref|ZP_02894676.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria IOP40-10] gi|170131061|gb|EDS99744.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria IOP40-10] Length = 70 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT +E + L+L +++EIA L + TV +L + KLDA +R + +A+ Sbjct: 2 PSVVLTPKERAILELLARSLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHVVRRAL 61 Query: 230 RFGYI 234 G + Sbjct: 62 VLGLL 66 >gi|186473908|ref|YP_001861250.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196240|gb|ACC74204.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 253 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 I L + NL+ R+ ++L G+T++ IA LG++ T+ +L Sbjct: 169 AAPIVRVEALQPHQQHLLENLSPRQQEIMRLVHRGWTNKMIARDLGVAEGTIKVHLSVIF 228 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 L NR A A A+ G++ Sbjct: 229 RALGVHNR--ATAIAVINGWL 247 >gi|329901490|ref|ZP_08272828.1| two component transcriptional regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] gi|327549098|gb|EGF33698.1| two component transcriptional regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] Length = 210 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178 +R G + L+ A + I+ H + + L + + L+ RE Sbjct: 94 LRSGASGYVQKEALATELVNAIQTIMRGHKYISYAVAELLTMDPDTNADKPLHETLSARE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +IA++L LSV TV+ Y K++ + I AI+ I Sbjct: 154 YEIFYKLSQGEGVTKIADELCLSVKTVSTYRARVLQKMNMTSNADIIYYAIKQNLI 209 >gi|196229471|ref|ZP_03128336.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226703|gb|EDY21208.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 225 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA + LT+RE QL G G T+ EIAE L L + TV+ Y KL N Q A Sbjct: 151 SAMKRLTDRELEVFQLIGAGKTTREIAEILNLGMTTVDTYRTRIKEKLGLRNGTQLQHYA 210 Query: 229 ---IRFGY 233 + G Sbjct: 211 SNCAQQGL 218 >gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans] gi|133739595|emb|CAL62646.1| Response regulator receiver, LuxR family [Herminiimonas arsenicoxydans] Length = 210 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 3/116 (2%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178 +R G +E L+ A + I+ H + + L + L++RE Sbjct: 94 LRSGASGYVQKEALAEELVTAIQTILRGHKYISHTVAELLTAEVDPNADKPLHETLSKRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+ +IA++L LSV TV+ Y K++ N I AI+ I Sbjct: 154 YEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNLI 209 >gi|329945473|ref|ZP_08293217.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528963|gb|EGF55901.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 221 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%) Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D L + +W + Q + L + A Sbjct: 46 YDAARSLRPDVVLMDLHMPGTDGVWATAQIAADCPDTKVLVLTAFDTDAMVAAAL----- 100 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 G+++ S ++ V A G +++ +E +R + +T+R Sbjct: 101 RAGATGFLLKDSAPEIIFRAVHAAADGQRAFSGSVLDRLVEAAVEATPQRRAFPETVTDR 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAKA 228 E L G + EIAE+L + TV ++ + K NR+Q A+A A Sbjct: 161 ERQVALLVAQGLGNSEIAEELVVGASTVKTHVSALLDKFGVSNRVQLAVAVA 212 >gi|288923030|ref|ZP_06417184.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. EUN1f] gi|288345613|gb|EFC79988.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. EUN1f] Length = 1343 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 34/77 (44%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + +A L+ERE + L T+ EIA ++ +SV+TV +L S KLD Sbjct: 1267 DPRRAARVGSAGSADLLSERELAVLSYLPTMLTTAEIAAEMFVSVNTVKTHLKSIYRKLD 1326 Query: 218 AVNRIQAIAKAIRFGYI 234 R A+ A + Sbjct: 1327 VARRRDAVHCARALHLL 1343 >gi|260221013|emb|CBA29154.1| hypothetical protein Csp_A10720 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 75 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+R+ L+ DG +++EI L +S TV ++ + D NR QA+ A R G Sbjct: 9 PLTQRQELVLRELLDGRSNKEIGTTLNVSEETVKTHVAAILRHFDVQNRTQAVVAAARSG 68 Query: 233 Y 233 Y Sbjct: 69 Y 69 >gi|260174181|ref|ZP_05760593.1| transcriptional regulator [Bacteroides sp. D2] gi|315922447|ref|ZP_07918687.1| transcriptional regulator [Bacteroides sp. D2] gi|313696322|gb|EFS33157.1| transcriptional regulator [Bacteroides sp. D2] Length = 257 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A A Sbjct: 197 LSEREKEILRCIRKGLSSKEIATTLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256 Query: 234 I 234 + Sbjct: 257 L 257 >gi|256851763|ref|ZP_05557151.1| two-component system response regulator [Lactobacillus jensenii 27-2-CHN] gi|260661520|ref|ZP_05862432.1| two-component system response regulator [Lactobacillus jensenii 115-3-CHN] gi|282933593|ref|ZP_06338963.1| transcriptional regulatory protein DegU [Lactobacillus jensenii 208-1] gi|297205385|ref|ZP_06922781.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615721|gb|EEU20910.1| two-component system response regulator [Lactobacillus jensenii 27-2-CHN] gi|260547577|gb|EEX23555.1| two-component system response regulator [Lactobacillus jensenii 115-3-CHN] gi|281302336|gb|EFA94568.1| transcriptional regulatory protein DegU [Lactobacillus jensenii 208-1] gi|297149963|gb|EFH30260.1| response regulator [Lactobacillus jensenii JV-V16] Length = 223 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ E +Q G G +++EI+ KL LS TV Y+ S +LD +R Q A++ G Sbjct: 158 SKNEWRVIQQVGLGLSNKEISAKLYLSEGTVRNYISSILSQLDLRDRTQLAIWAVQTG 215 >gi|221197308|ref|ZP_03570355.1| C4-dicarboxylate transport transcriptional regulatory protein DctR [Burkholderia multivorans CGD2M] gi|221203981|ref|ZP_03576999.1| C4-dicarboxylate transport transcriptional regulatory protein DctR [Burkholderia multivorans CGD2] gi|221176147|gb|EEE08576.1| C4-dicarboxylate transport transcriptional regulatory protein DctR [Burkholderia multivorans CGD2] gi|221183862|gb|EEE16262.1| C4-dicarboxylate transport transcriptional regulatory protein DctR [Burkholderia multivorans CGD2M] Length = 210 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 12/123 (9%) Query: 116 AGIAFPVR--LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--- 170 G PV G + + + + + L L ++R +A Sbjct: 74 RGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAADRR 133 Query: 171 -------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+ DG S++IA L +SV TV+ + S KL A + Sbjct: 134 HRELRERLAALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAA 193 Query: 224 AIA 226 + Sbjct: 194 LVR 196 >gi|196233033|ref|ZP_03131881.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196222840|gb|EDY17362.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 212 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 8/160 (5%) Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE---- 137 P + S + R+ G I + Sbjct: 49 RQHRP-DVTLMDVRMPGASGIEALQRIRGEFPDARVIMLTTYDLDEDVFRALEAGAVGYL 107 Query: 138 FLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + A + + + LE K + L+ RE L L G+++ EI Sbjct: 108 LKSVRHAELFAAVRKVHAGERCVPQSLETRCKNGALRSRLSPREVETLDLLARGFSNREI 167 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ T A++ + VKL+A +R +A+ A + G + Sbjct: 168 GSALGVTERTAKAHVQAILVKLEAADRAEAVDAAYKRGLL 207 >gi|182435952|ref|YP_001823671.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464468|dbj|BAG18988.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 220 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G+G ++ EIA +L ++ TV ++ KL+ +R+QA Sbjct: 151 PAVLDALTRREREVLGCLGEGLSNAEIALRLAMAEATVKTHVSRVLGKLELRSRVQAAVL 210 Query: 228 AIRFGY 233 A G Sbjct: 211 AQELGI 216 >gi|167622115|ref|YP_001672409.1| two component LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352137|gb|ABZ74750.1| two component transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 213 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 15/131 (11%) Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGAC-----------YQVITDFLE 162 I F V I + E +IE Q++ L Sbjct: 81 IIFTVSDNESDVVQAIKFNTDGYLLKDSEPEELIEKIHLALQGEFVISSPLTQILAQSLR 140 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 K+ S LT+RE ++L G +++EIA KLG++ TV ++ + KL +R+ Sbjct: 141 SGGKKVSQLEELTQRELQIVKLIASGKSNKEIANKLGITDSTVKVHVKNLLKKLTLKSRV 200 Query: 223 QAIAKAIRFGY 233 + + A+ Sbjct: 201 EVVLWAVENKI 211 >gi|153007612|ref|YP_001368827.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559500|gb|ABS12998.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 241 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + G +++ IA +LG+S TV A++ + K+ A NR + K R Sbjct: 173 GELLTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRTEVACKLHR 232 Query: 231 F 231 Sbjct: 233 M 233 >gi|146343765|ref|YP_001208813.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196571|emb|CAL80598.1| putative Transcriptional regulatory protein, luxR family [Bradyrhizobium sp. ORS278] Length = 199 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 37/64 (57%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + ++++LT RE L+L +G++++E A ++G+S T ++ A KL A N + + Sbjct: 132 RSGGSSKSLTPREREVLKLISEGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELV 191 Query: 226 AKAI 229 A+ Sbjct: 192 RAAL 195 >gi|91775168|ref|YP_544924.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91709155|gb|ABE49083.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 213 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 47/148 (31%), Gaps = 19/148 (12%) Query: 103 QLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEFLMLANEVIIEAHG-- 151 + R+ I F + LG YV + L V A G Sbjct: 67 EALRRIIARYPQARVIIFSMHENAAFASQALGAGARAYVAKSGAADDLVQAVREVAQGKG 126 Query: 152 -----ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 Q+ L R L+ RE +L G EEI+ L +S TV Sbjct: 127 YLSPGIAQQIALQTLSGSDD---PTRLLSAREFEVFRLLAAGKGVEEISTILKISQKTVA 183 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y KL + I+ + AI+ G I Sbjct: 184 NYQTLLKQKLGITSPIELVRLAIKHGVI 211 >gi|297543943|ref|YP_003676245.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841718|gb|ADH60234.1| transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 257 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLT 175 IA P + GY+ + +A+E++ Y++ ++ E+ + LT Sbjct: 138 CIATPFHIDNQIVGYLDISIIEHNMADEMMGFIDLLVYKIANEYKREMDLESQEDLEKLT 197 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++ ++ GYT I+ +LGL TV + KL N QAIAKAIR I Sbjct: 198 DKQIEIIKKCAKGYTELAISMELGLKPATVKYHKKEIIKKLRVKNFQQAIAKAIRLNLI 256 >gi|282600216|ref|ZP_05973470.2| putative two-component, nitrogen fixation regulatory protein FixJ [Providencia rustigianii DSM 4541] gi|282566315|gb|EFB71850.1| putative two-component, nitrogen fixation regulatory protein FixJ [Providencia rustigianii DSM 4541] Length = 238 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 26/54 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE + + DG TS E AEKL LS TV + + KL + Q I Sbjct: 172 DRLSAREREIMDMILDGNTSRETAEKLSLSPRTVEVHRSNIYTKLGIKSLPQLI 225 >gi|212711337|ref|ZP_03319465.1| hypothetical protein PROVALCAL_02409 [Providencia alcalifaciens DSM 30120] gi|212686066|gb|EEB45594.1| hypothetical protein PROVALCAL_02409 [Providencia alcalifaciens DSM 30120] Length = 209 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 26/54 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE + + DG TS E AEKL LS TV + + KL + Q I Sbjct: 143 DRLSAREREIMDMILDGNTSRETAEKLSLSPRTVEVHRSNIYTKLGIKSLPQLI 196 >gi|319795269|ref|YP_004156909.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597732|gb|ADU38798.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 228 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 33/66 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + LT RE+ L G G +S++IA LGLSV TV A+ S +L + + I Sbjct: 156 RNQAPRPLLTPRESEILTALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELI 215 Query: 226 AKAIRF 231 A+ Sbjct: 216 KYAVEH 221 >gi|256422989|ref|YP_003123642.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037897|gb|ACU61441.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 220 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L++ E +Q+ +G +++EIA+ L +S+ TV + + + KL+ I AI Sbjct: 150 AHHKLSKTEFRVMQMIAEGMSTKEIAQSLNISIKTVENHRHNISKKLNLTGHNSLIKYAI 209 Query: 230 RF 231 + Sbjct: 210 KN 211 >gi|227540526|ref|ZP_03970575.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239608|gb|EEI89623.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 209 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE LQ A G TS EIA+ L +S HTV ++ + K N I A+ + Sbjct: 145 PKITRREKEILQEAAKGLTSTEIADVLFISSHTVESHRKNLIEKFKVKNIASVIGLALEY 204 Query: 232 GYI 234 G I Sbjct: 205 GLI 207 >gi|254436019|ref|ZP_05049526.1| Sigma-70, region 4 family [Nitrosococcus oceani AFC27] gi|207089130|gb|EDZ66402.1| Sigma-70, region 4 family [Nitrosococcus oceani AFC27] Length = 184 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q + + + ++ LT RE + L G ++ IA L +S+ TV + G Sbjct: 102 QYLREEQKEREEIIIRMMRLTPREREVMALVLKGQPNKLIASDLDISIKTVEIHRGQVMK 161 Query: 215 KLDAVNRIQAIAKAI 229 KL + I A+ Sbjct: 162 KLQVRTQADLIHLAL 176 >gi|217978174|ref|YP_002362321.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217503550|gb|ACK50959.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 223 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA +L+ERET L+L G++ + +A +L +SV +V Y A KL +R+Q + A Sbjct: 155 SAIADLSERETEVLRLTAGGHSHKAVAAELRISVKSVETYKARAMEKLGFDSRVQLVRYA 214 Query: 229 IRFGYI 234 G++ Sbjct: 215 AGKGWL 220 >gi|149189037|ref|ZP_01867326.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA family) [Vibrio shilonii AK1] gi|148837223|gb|EDL54171.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA family) [Vibrio shilonii AK1] Length = 199 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE++ L+L DG+T++EIA ++ +S TV+ Y K D + + Sbjct: 139 KLSTRESAVLRLLLDGHTNKEIARRMNISEKTVSTYKRRILDKYDVRSVFMLV 191 >gi|187921514|ref|YP_001890546.1| two component LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719952|gb|ACD21175.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 213 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+++E LQ+ G +++ I + L +S TV+++ KL + ++ I A R Sbjct: 150 LSDKELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMHKLGVKSLVELIDLARR 206 >gi|78184142|ref|YP_376577.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78168436|gb|ABB25533.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 239 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 38/77 (49%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + + L+ RE L+ G +++EIA++L L++ T+ + S KL+ Sbjct: 148 SRRRPILDGPPLLSDVLSLREEDVLRGLCRGLSNQEIADQLHLAIDTIKHAVTSLLRKLE 207 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R QA+ A + + Sbjct: 208 ARDRTQAVLIAFQHNLV 224 >gi|326333357|ref|ZP_08199604.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325949001|gb|EGD41094.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 253 Score = 75.7 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + + L+ + + + A V +E ++ LT ++ L L +G Sbjct: 107 EATSLVSGVRLVASGHTLFDPEAAAKVVHN--VEERRRMHEVVAELTPQQRRILVLLAEG 164 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++ EIA++L L+ TV ++ KL +R QA A + Sbjct: 165 ISNREIADRLVLAEKTVKNHITGLLAKLGVSHRTQAALMASQL 207 >gi|298505405|gb|ADI84128.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter sulfurreducens KN400] Length = 216 Score = 75.7 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + S+++ LT RE LQL +G ++E+A L +SV TV + KL + Sbjct: 141 RRGRPESASSIRLTPREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSI 200 Query: 222 IQAIAKAIRFGY 233 AIR G Sbjct: 201 ADMTKFAIREGL 212 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.315 0.153 0.431 Lambda K H 0.267 0.0468 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,408,454,909 Number of Sequences: 14124377 Number of extensions: 126766700 Number of successful extensions: 565099 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 24055 Number of HSP's successfully gapped in prelim test: 7966 Number of HSP's that attempted gapping in prelim test: 535411 Number of HSP's gapped (non-prelim): 34195 length of query: 235 length of database: 4,842,793,630 effective HSP length: 135 effective length of query: 100 effective length of database: 2,936,002,735 effective search space: 293600273500 effective search space used: 293600273500 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 79 (34.8 bits)