BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780693|ref|YP_003065106.1| transcriptional regulator
protein [Candidatus Liberibacter asiaticus str. psy62]
         (235 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040370|gb|ACT57166.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 235

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD
Sbjct: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
           SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF
Sbjct: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS
Sbjct: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235
           CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC
Sbjct: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235


>gi|327193021|gb|EGE59933.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 306

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 3/231 (1%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +   + SS  +L PRL  +Q    A+ FA+Y ++ +   P +Q+L+CEL N+   +    
Sbjct: 76  VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGPSNAGFG 134

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123
               + YGD  L H    LLP+ W    +      +       RL  G+LPF+G+AFPVR
Sbjct: 135 KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVR 194

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           LG   NG+++FT + +  ++++I+E HG C  ++ D L L ++R++AA  L+ERE +CLQ
Sbjct: 195 LGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 254

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LAGDG  SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 255 LAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 305


>gi|315121858|ref|YP_004062347.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495260|gb|ADR51859.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 235

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 199/235 (84%), Positives = 217/235 (92%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           MSENTL  KKS SL ELS +L +IQ RIKARNFALYTIN ALD PRRQQL+CEL+NYD +
Sbjct: 1   MSENTLLEKKSFSLLELSSKLKIIQKRIKARNFALYTINCALDSPRRQQLVCELNNYDPE 60

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
           SG+IPNILI+TYGD+FLFHFNSGLLPIIW ++QEET+IESSGQ  +RL+ G+LPFAGIAF
Sbjct: 61  SGEIPNILIKTYGDEFLFHFNSGLLPIIWNNMQEETIIESSGQFFIRLDKGILPFAGIAF 120

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P+RLGFHKNGYV+FT+E LMLANEVIIEAHGACYQVI  FL LFKKRSSAARNLTERETS
Sbjct: 121 PLRLGFHKNGYVVFTAECLMLANEVIIEAHGACYQVIMGFLALFKKRSSAARNLTERETS 180

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235
           CLQLAGDGYTSEEIA+KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC
Sbjct: 181 CLQLAGDGYTSEEIAKKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235


>gi|218514696|ref|ZP_03511536.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 240

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 3/231 (1%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +   + SS  +L PRL  +Q    A+ FA+Y ++ +   P +Q+L+CEL N+   +    
Sbjct: 10  VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFG 68

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123
               + YGD  L H    LLP+ W    +      +       RL  G+LPF+G+AFPVR
Sbjct: 69  KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVR 128

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           LG   NG+++FT + +  ++++I+E HG C  ++ D L L ++R++AA  L+ERE +CLQ
Sbjct: 129 LGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LAGDG  SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 189 LAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 239


>gi|190890350|ref|YP_001976892.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695629|gb|ACE89714.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 248

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 3/231 (1%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +   + SS  +L PRL  +Q    A+ FA+Y ++ +   P +Q+L+CEL N+   +    
Sbjct: 18  VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFG 76

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123
               + YGD  L H    LLP+ W    +      +       RL  G+LPF+G+AFPVR
Sbjct: 77  KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVR 136

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           LG   NG+++FT + +  ++++I+E HG C  ++ D L L ++R++AA  L+ERE +CLQ
Sbjct: 137 LGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 196

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LAGDG  SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 197 LAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247


>gi|82940563|emb|CAJ44292.1| putative transcription regulator protein MotS, LuxR family
           [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/231 (46%), Positives = 152/231 (65%), Gaps = 3/231 (1%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +   + SS  +L PRL  +Q  + A+ FA++ ++ +   P +Q+L+CEL N+   +    
Sbjct: 18  VRVSRISSRSDLFPRLIAMQKLVDAQGFAIFRVSGS-GLPAKQRLVCELENWGPSNAGFG 76

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123
               + YGD  L H +  LLP+ W    +      +       RL+ G+LPF+G+AFPVR
Sbjct: 77  KAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFAPFMTRLQDGILPFSGLAFPVR 136

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           LG   NG+++FT + +  +++ I+E HG C  ++ D L L ++R++AA  L+ERE +CLQ
Sbjct: 137 LGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 196

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LAGDG  SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 197 LAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247


>gi|241203093|ref|YP_002974189.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856983|gb|ACS54650.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 248

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 107/231 (46%), Positives = 151/231 (65%), Gaps = 3/231 (1%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +   + SS  +L PRL  +Q    A+ FA++ ++ +   P +Q+L+CEL N+   +    
Sbjct: 18  VRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGS-GIPAKQRLVCELENWGSSNAGFG 76

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPVR 123
               + YGD  L H +  LLP+ W    +      +       RL+ G+LPF+G+AFPVR
Sbjct: 77  KAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPVR 136

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           LG   NG+++FT + +  +++ I+E HG C  ++ D L L ++R++AA  L+ERE +CLQ
Sbjct: 137 LGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 196

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LAGDG  SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 197 LAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247


>gi|86356299|ref|YP_468191.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280401|gb|ABC89464.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 248

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/231 (48%), Positives = 151/231 (65%), Gaps = 3/231 (1%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +   + SS  +L PRL  +Q    A+ FA+Y ++ +   P +Q+L+CEL N+ L +    
Sbjct: 18  VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GMPAKQRLVCELENWGLSNVGFG 76

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPVR 123
               + YGD  L H    LLP+ W    +      +       RL+ G+LPF+G+AFPVR
Sbjct: 77  KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFSPFMTRLKDGILPFSGLAFPVR 136

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           LG   NG+++FT + +  +++ I+E HG C  V+ D L L ++RS+AA  L+ERE +CLQ
Sbjct: 137 LGAVGNGFILFTGDDIDPSSDTIVELHGRCCHVMMDLLSLDERRSAAAEALSEREIACLQ 196

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LAGDG  SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 197 LAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247


>gi|262283888|gb|ACY40752.1| VisR [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 108/232 (46%), Positives = 152/232 (65%), Gaps = 3/232 (1%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
           T+   + SS  +L PRL  +Q    A+ FA++ ++ +   P +Q+L+CEL N+   +   
Sbjct: 17  TVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPV 122
                + YGD  L H +  LLP+ W    +      +       RL+ G+LPF+G+AFPV
Sbjct: 76  GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
           RLG   NG+++FT + +  +++ I+E HG C  ++ D L L ++R++AA  L+ERE +CL
Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           QLAGDG  SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247


>gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 248

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 108/232 (46%), Positives = 153/232 (65%), Gaps = 3/232 (1%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
           T+   + SS  +L PRL  +Q   +A+ FA++ ++ +   P +Q+L+CEL N+   +   
Sbjct: 17  TVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPV 122
                + YGD  L H +  LLP+ W    +      +       RL+ G+LPF+G+AFPV
Sbjct: 76  GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
           RLG   NG+++FT + +  +++ I+E HG C  ++ D L L ++R++AA  L+ERE +CL
Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           QLAGDG  SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247


>gi|209547915|ref|YP_002279832.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533671|gb|ACI53606.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 248

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 106/231 (45%), Positives = 149/231 (64%), Gaps = 3/231 (1%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +   + SS  +L PRL  +Q    A  FA++ ++ +   P +Q+L+CEL N+   +    
Sbjct: 18  VRVNRISSRSDLFPRLIAMQKLADAHGFAIFRVSGS-GIPAKQRLVCELENWGSSNAGFG 76

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123
               + YGD  L H    LLP+ W    +      +       RL+ G++PF+G+AFPVR
Sbjct: 77  KAFTDAYGDALLEHIEKSLLPLSWAGGCDRAAPGPADFAPFMTRLQDGIVPFSGLAFPVR 136

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           LG   NG+++FT + +  +++ I+E HG C  ++ D L L ++R++AA  L+ERE +CLQ
Sbjct: 137 LGAVGNGFIVFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 196

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LAGDG  SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 197 LAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247


>gi|222084852|ref|YP_002543381.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722300|gb|ACM25456.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 248

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 116/227 (51%), Positives = 159/227 (70%), Gaps = 3/227 (1%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           + S   +L P+L  +Q  I A+NFALY ++ +   P +Q+L+CEL N+   +  +    +
Sbjct: 22  RISGRSDLFPKLVSMQKLIDAQNFALYRLSGS-GLPSKQRLVCELENWGSANPVMNKAFV 80

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127
           E YG+  + H    LLP++W     ++  E+      + RL+  LLPFAG+AFPVRLG  
Sbjct: 81  EAYGEAMIEHIEKSLLPLMWNGRDSDSTAETPDFAAFTQRLKPHLLPFAGVAFPVRLGSV 140

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
            NGYV+FT++F+ +A+++I+E HG   Q++ + L L ++RS AA  L+ERE +CLQLAGD
Sbjct: 141 GNGYVVFTAKFMDVASDMIVELHGRSCQIMMELLSLDERRSPAAEALSEREIACLQLAGD 200

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G  SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIRFGYI
Sbjct: 201 GRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRFGYI 247


>gi|150395471|ref|YP_001325938.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150026986|gb|ABR59103.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 247

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/227 (48%), Positives = 145/227 (63%), Gaps = 3/227 (1%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +++    L  RL  +Q +I ARNFA+   N     P  ++L C LHN+     +I   LI
Sbjct: 21  RAAQAAGLVTRLQAMQRQINARNFAVLRTNGR-GLPAARKLTCVLHNWGTSCEEIARDLI 79

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           + YG++ L H +  LLP++W    E    E    G  + RL+   LP++GIA P+RLG  
Sbjct: 80  DHYGEELLQHLDHSLLPVLWDGKGEHQTAETSDFGPFTRRLKDRKLPYSGIALPIRLGAQ 139

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
            NGYV+F   ++  + E I+E HG   Q++TD L   +KR   A  L++RE SCLQ+AGD
Sbjct: 140 GNGYVVFAGSYIDASGEQIVELHGRSAQIMTDLLTFDEKRPLKAEALSDREISCLQMAGD 199

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+ SEEIAEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI
Sbjct: 200 GHISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 246


>gi|167566108|ref|ZP_02359024.1| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Burkholderia
           oklahomensis EO147]
          Length = 236

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 15/240 (6%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +++  L+  + S+  E+   L      +   NF+          P  +  I  L NY   
Sbjct: 5   LTDLLLSITQKSTSSEIFSSLEKYTRELGFDNFSY---GFCHPIPFTKPRIVILSNYPER 61

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                + L     D  + H  +   P  W  +    V     +             G A 
Sbjct: 62  WRGRYSELGYVNIDPTVLHGRNSQSPFTWSELPTSDV-----RSFWDEANAHGLVVGWAK 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNL 174
            +       G +        L  + +   +     ++ D   +       K+ +++A  L
Sbjct: 117 SILDSDGGLGMLTLARSNEELCGKELAAKNLRMC-LLADLTHMVLSDAYRKEMTASADKL 175

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   L+   DG T++EI   L +S+ TV  +  +A VKL A N+  A+A+A   G +
Sbjct: 176 SAREVEILRWHADGKTADEIGRILSISIDTVKFHTKNAVVKLGASNKTAAVARAAIMGLL 235


>gi|227820844|ref|YP_002824814.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227339843|gb|ACP24061.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 101/220 (45%), Positives = 141/220 (64%), Gaps = 3/220 (1%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L  RL  +Q ++ A+NFA+  +N     P  ++L C LHN+   S    + L++ YG++ 
Sbjct: 27  LVTRLQAMQRQVNAKNFAVLRVNGR-GMPATRKLTCVLHNWGAASETNAHELLKVYGEEL 85

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQ--LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
           L H +   L ++W    E    ++      S RL+G  L ++GIAFP+RLG   NGYV+F
Sbjct: 86  LQHLDRSPLAVLWDGQGEHQAADAPDMALFSNRLKGRKLSYSGIAFPIRLGAQGNGYVVF 145

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              ++    E +++ HG C QV+ D L   ++R     +L++RE +CLQ+AGDGY SEEI
Sbjct: 146 AGSYIDAPAEQVLDLHGRCAQVMADMLAADERRLFKGESLSDREIACLQMAGDGYISEEI 205

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI
Sbjct: 206 AEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 245


>gi|325291914|ref|YP_004277778.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059767|gb|ADY63458.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 248

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 108/225 (48%), Positives = 147/225 (65%), Gaps = 3/225 (1%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S  +L P+L  +Q  + ARNF +    +A  FP +++L CEL N+ +++ +     I  
Sbjct: 24  TSRSDLFPKLVAMQKLVGARNFVVTK-AAASGFPNKKKLTCELENWGMNAAEQSAQFIRA 82

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
            GD  L H  + LLP+IW++       +      L  R+E   LP+AG+A PVRLG   N
Sbjct: 83  VGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALMRRIENDTLPYAGLALPVRLGTIGN 142

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           GY++F    L+L NEV+IE H  C +++ D L L +++ + +  L+ERE +CLQLAGDG 
Sbjct: 143 GYIVFCGSNLVLDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDGR 202

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            SEEIA KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 203 ISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247


>gi|15964401|ref|NP_384754.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307311543|ref|ZP_07591184.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318898|ref|ZP_07598329.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|3894103|emb|CAA11949.1| unnamed protein product [Sinorhizobium meliloti]
 gi|15073578|emb|CAC45220.1| Regulator of flagellar operons, LuxR family, probable forming a
           heterodimer with VisN [Sinorhizobium meliloti 1021]
 gi|306895312|gb|EFN26067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306899560|gb|EFN30189.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 107/220 (48%), Positives = 139/220 (63%), Gaps = 3/220 (1%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L  RL  +Q +I A+NFA+   N     P  ++L C LHN+     +    LI  YGD+ 
Sbjct: 27  LVTRLQAMQRQINAKNFAVLRTNGR-GLPATRKLTCVLHNWGASCEENARDLIMLYGDEL 85

Query: 77  LFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
           L H +  LLP++W    E    E    G  + RL    LP++GIAFP+RLG   NGYV+F
Sbjct: 86  LQHLDLSLLPVLWNGQGEHQTAEVSDFGPFTRRLRERKLPYSGIAFPIRLGAQGNGYVMF 145

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              ++  + E I+E HG   Q++ D L   +KR   A  L++RE +CLQ+AGDG+ SEEI
Sbjct: 146 AGSYIDASGEQIVELHGRSAQIMADLLAADEKRLFKAEALSDREIACLQMAGDGHISEEI 205

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI
Sbjct: 206 AEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 245


>gi|159045392|ref|YP_001534186.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157913152|gb|ABV94585.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 236

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 22/237 (9%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             +++ SL ++  RL  ++  ++  NFA + ++++ +             YD        
Sbjct: 11  DLQEAKSLDDVQARLFGLRESLEVENFAYHCLDASGNK-------YGAMTYDAPWVKRYI 63

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
            +     D  +        P+ W+ +          +         +   G++ PVR   
Sbjct: 64  EMDYARVDPVIKGTYQRFHPVDWKQLDWSPKAAR--EFMGEALETGVGNQGLSVPVRGPN 121

Query: 127 HKNGYVIFTSEFLMLANE---------VIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            +       +     A E          I+ AH    +     LEL +  +  A+ L+ R
Sbjct: 122 GQFAVFSVNNRATDAAWESYQKEYLKTFILAAHFINQRA----LELEEDINPTAKPLSPR 177

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+  L    +G +  ++AEKL +S HT+  Y+ SA  KL A N   A+A+A+  G I
Sbjct: 178 ESDALTHLANGLSRGQVAEKLKISEHTLRVYIESARFKLGAANTTHAVARAMVRGLI 234


>gi|15887874|ref|NP_353555.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15155462|gb|AAK86340.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 251

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 107/225 (47%), Positives = 147/225 (65%), Gaps = 3/225 (1%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S  +L P+L  +Q  + ARNF +    +A  FP ++++ CEL N+ +++ +     I  
Sbjct: 27  TSRSDLFPKLVAMQKLVGARNFVVTK-AAASGFPNKKKMTCELENWGMNAAEQSAQFIRA 85

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
            GD  L H  + LLP+IW++       +      L  R+E   LP+AG+A PVRLG   N
Sbjct: 86  VGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALLRRIENDTLPYAGLALPVRLGTIGN 145

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           GY++F    L+L NEV+IE H  C +++ D L L +++ + +  L+ERE +CLQLAGDG 
Sbjct: 146 GYIVFCGTNLILDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDGR 205

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            SEEIA KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 206 ISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250


>gi|145301148|ref|YP_001143989.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853920|gb|ABO92241.1| transcriptional regulator, LuxR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 260

 Score =  174 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 10/232 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           K+    E+  +L    +++    F  + +        ++  +   +N      +  +   
Sbjct: 17  KAKKTSEIQQQLERFSHQM---GFDYFRLLIIFPISMQKSHVALFNNCPTSWFEAYSERH 73

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
               D  +F       PI W  +  ++  + S+ +  + L        G++FP+     +
Sbjct: 74  YLTQDPVVFLGLKQTQPIFWNKLDCDSPWLPSASREVMNLAADFGVRNGVSFPLHTPQGE 133

Query: 129 NGYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCL 182
           +G + F S       L  E +         +    L+L K R    ++LTE   RE  CL
Sbjct: 134 HGILSFISKEKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDLMKHLTELSDREKECL 193

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A +G TS EIA  LG+S  TVN +L   T K D+ NR QAIAK+I  G I
Sbjct: 194 FWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 245


>gi|220921013|ref|YP_002496314.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945619|gb|ACL56011.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 245

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 78/232 (33%), Gaps = 9/232 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + +SS   L   L          +F +  +               L  + ++        
Sbjct: 16  QAASSQTALFSELKEAGRYFGYDSFIVTGLPHRQGENLND--CSLLVGWPMEWAKRYTER 73

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              + D  +      L P +W     +   +      +          G   P+     +
Sbjct: 74  RYIHVDPVIAQIRRTLDPFMWDEAPYD-RSDPGPATVMNESPSFGLNQGFCVPIHRIDGR 132

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCL 182
              V F +  + L+++     H       +    L    S+ A         + RE  C+
Sbjct: 133 EAGVSFGASRMDLSDDARAGLHLVAIYAFSAARALSAMPSNPADPERQPPRCSAREIECM 192

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + A  G T  EI+E L LS  TV AYL +A  KL   NR+  IA+AIR G I
Sbjct: 193 RWAAAGKTGWEISEILSLSQRTVEAYLNNAARKLGVANRVHLIAEAIRHGLI 244


>gi|330831695|ref|YP_004394647.1| LuxR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806831|gb|AEB52030.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565]
          Length = 258

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 10/232 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           K++   ++   L    +++    F  + +        ++  +   +N      D  +   
Sbjct: 15  KATKTSDIQQLLERFSHQM---GFDYFRLLIIFPISMQKSHVALFNNCPTTWFDAYSENQ 71

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
               D  ++       PI W  +  ++  + S+ +  + L        G++FP+     +
Sbjct: 72  YLTQDPVVYLGLKQTQPIFWNKLDCDSPWLPSASRDVMNLAADFGVRNGVSFPLHTPQGE 131

Query: 129 NGYVIFTSEF---LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCL 182
           +G + F ++      L  E +         +    L+L K R    + LTE   RE  CL
Sbjct: 132 HGILSFITKDKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDMMKYLTELSDREKECL 191

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A +G TS EIA  LG+S  TVN +L   T K D+ NR QAIAK I  G I
Sbjct: 192 FWASEGKTSWEIATILGISERTVNFHLTQVTNKTDSKNRSQAIAKGITSGII 243


>gi|222149994|ref|YP_002550951.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736976|gb|ACM37939.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 251

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 105/238 (44%), Positives = 146/238 (61%), Gaps = 6/238 (2%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           S   L  + +++  ++ PRL  +Q  I AR+FA++ +  +   PR++ L CE  ++    
Sbjct: 14  SAADLKARLAANRGDIFPRLIAMQKAINARSFAVFRVAGS-GLPRKRMLQCECESWAASG 72

Query: 62  G--DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI--ESSGQLSVRLEGGLLPFAG 117
                 +  +  YGD  L H +  LLP++W +    T       G    RL  G LPF+G
Sbjct: 73  MVGSYSDAFVSCYGDLLLSHIDDLLLPLMWNAKDNATFCISSEFGAFVSRLPAGNLPFSG 132

Query: 118 IAFPVRLGFHKNGYVIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176
           +AFPVRLG   NGYVIF       L ++V+I+ H    +++ D L L +++ + +  L++
Sbjct: 133 VAFPVRLGAVGNGYVIFALNGSEDLDSDVMIDMHNRSCKLMMDILSLSERKVAPSEALSD 192

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE +CLQLAGDG  SEEIAE LGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 193 REIACLQLAGDGRISEEIAENLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250


>gi|126730312|ref|ZP_01746123.1| autoinducer-binding transcriptional regulator LuxR [Sagittula
           stellata E-37]
 gi|126709045|gb|EBA08100.1| autoinducer-binding transcriptional regulator LuxR [Sagittula
           stellata E-37]
          Length = 226

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + +  L++L   +  +++     +   + +NSA +             YDL+  +     
Sbjct: 2   ESADGLEDLQLLIEELRDEYGVDHIVYHWVNSAGEQ-------YGCGTYDLEWVNHYIEK 54

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +        P+ W+ +   +   S+        G  +   G + P+R    +
Sbjct: 55  GYLRIDPVIQGCYQRFHPVNWKRLDWSSK--SARAFLEDAIGHGIGNQGYSIPIRGPNGQ 112

Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCL 182
                 +        E        +     +   +  LE    R+   A+ L+ RE   +
Sbjct: 113 FALFTMSHSCNDDEWEAFTISNRRDLILVAHSFNSKALEFEPGRTPEPAQPLSPREIEAM 172

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   GY+  + A+ L +S HT+  Y+ SA  KL A+N   A+A+A+  G I
Sbjct: 173 TLLAIGYSRAQAADTLSISEHTLRVYVESARHKLGAMNTTHAVAQALSRGVI 224


>gi|39933398|ref|NP_945674.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39647244|emb|CAE25765.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 243

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 1   MSENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICEL 54
           + E+ L G+++    +   RL         ++ I +  F  Y +            +   
Sbjct: 3   VGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLA 62

Query: 55  HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114
           + +  D  D+      +  D    H  + + P +W     +   + +    +        
Sbjct: 63  NGWPRDWFDLYVSENFSAVDPVPRHGATTVHPFVWSDAPYDRDRDPAAHRVMTRAAEFGL 122

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
             G   P+      +  +    +   L+               +    L + +      L
Sbjct: 123 VEGYCIPLHYDDG-SAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRL 181

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   LQ A  G T+ EI+  L ++  TV  +L  A  KLDA NR  A+AKA+  G I
Sbjct: 182 TPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241


>gi|192288754|ref|YP_001989359.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192282503|gb|ACE98883.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 243

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 1   MSENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICEL 54
           + E+ L G+++    +   RL         ++ I +  F  Y +            +   
Sbjct: 3   VGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLA 62

Query: 55  HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114
           + +  D  D+      +  D    H  + + P +W     +   + +    +        
Sbjct: 63  NGWPRDWFDLYVSENFSAVDPVPRHGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEFGL 122

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
             G   P+      +  +    +   L+               +    L + +      L
Sbjct: 123 VEGYCIPLHYDDG-SAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRL 181

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   LQ A  G T+ EI+  L ++  TV  +L  A  KLDA NR  A+AKA+  G I
Sbjct: 182 TPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241


>gi|115524334|ref|YP_781245.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115518281|gb|ABJ06265.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 246

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 69/227 (30%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++ S+L  +S  +  I+    A  F    +    +  +    +     +  +   +   
Sbjct: 18  VEELSTLTTISAAIDFIEKGFCAYGFETIIVTGIPNHKQSFSQMVMAKRWPDEWFKLYTQ 77

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  + H      P  W         E      +          G   PV     
Sbjct: 78  NNYHRDDPVVRHLRKSFNPFEWSDAPYSRRNEPRAAAVMDRAADFRMSRGFIVPVHGLAG 137

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               V    + + L        H            L    + A   LT RE   L     
Sbjct: 138 YEAAVSLGGDHIDLNPRSKPALHLMAMYAFDRIRSLVSPANDAPPRLTHRECETLNWTAQ 197

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ EI E L ++  T   +L +A  KL AVN+  A+A AIR   I
Sbjct: 198 GKSAWEIGEILQIAQRTAEEHLATAARKLGAVNKTHAVAIAIRQKLI 244


>gi|316931698|ref|YP_004106680.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315599412|gb|ADU41947.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           DX-1]
          Length = 243

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 1   MSENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICEL 54
           + E+ L G+++    +   RL         ++ I +  F  Y I            +   
Sbjct: 3   VGEDQLWGRRALEFVDAVERLDAPALVSQFESLIASCGFTAYIIAGLPSRNAGLPELTLA 62

Query: 55  HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114
           + +  D  D+      +  D    H  S + P +W     +   + +    +        
Sbjct: 63  NGWPRDWFDLYVSENFSAVDPVPRHVASTVHPFVWSEAPYDRDRDPAAHRVMTRAAEFGL 122

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
             G   P+      +  +    +   L+               +    L + +      L
Sbjct: 123 VEGYCIPLHYDDG-SAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRTLGRPKPGRRNKL 181

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   LQ A  G T+ EI+  L ++  TV  +L  A  KLDA NR  A+AKA+  G I
Sbjct: 182 TARECEILQWAAQGKTAWEISMILCIAERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241


>gi|9297072|sp|P74946|VANR_VIBAN RecName: Full=Transcriptional activator protein vanR
 gi|1568660|gb|AAC45213.1| VanR [Listonella anguillarum]
          Length = 240

 Score =  171 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 13/232 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ +S  +L   L+ + N I    F L+ ++        +       NY        +  
Sbjct: 12  QQITSHDDLENVLNGLNNLIGHEFF-LFGLSFQPTLKTSE--TLVTDNYPNSWRQQYDES 68

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              + D  + +  +  LPI W    +   + + G++           AG + P+     +
Sbjct: 69  GFMHIDPIVKYSITNFLPIRW---DDAKRVNNDGRVIFEEARCNGLKAGFSIPIHGLRGE 125

Query: 129 NGYVIFTSEFL---MLANEVIIEAHGA---CYQVITDFLELFKKRSSAARNLTERETSCL 182
            G + F +       L  + I  +          I +     K     A  LT RE  CL
Sbjct: 126 FGMISFATSDTKSYDLNQQSIHTSQLIVPLLAHNIGNITRYHKDAKPRA-VLTAREVQCL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A +G ++ EIA  +  S  TV  +  +A  KL A NR QAI KAI  GYI
Sbjct: 185 AWAAEGKSAWEIATIINTSERTVKFHFSNACKKLGATNRYQAITKAILGGYI 236


>gi|167589289|ref|ZP_02381677.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 229

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 77/233 (33%), Gaps = 16/233 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +++ S +E+   +      +    +        + +P  +  I  L+NY           
Sbjct: 5   EQADSEREIYGWIEHAARSL---GYEYCAYGLRMPWPVSRPRIYMLNNYPEAWQKRYQEA 61

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  + H      P++W         +                 G           
Sbjct: 62  RYVDIDPTVKHARRSQAPLVWSDACFAATPQ-----LWCEAQAHGLRHGWTQSAFDSCGV 116

Query: 129 NGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +G +        +    +              +  +T  L L K      R LT+RE   
Sbjct: 117 SGMLTLARSNGPITPAELEQNEFKMRWLVSTAHLAMTGKL-LPKLAPDTERGLTDREVEV 175

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+ A DG TS EI+  L +SV TVN ++ +A  KL A N+  A+ +A   G +
Sbjct: 176 LKWAADGKTSGEISTILVISVDTVNFHVKNAVSKLKAANKTSAVVRATMLGLL 228


>gi|260425367|ref|ZP_05779347.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp.
           SE45]
 gi|260423307|gb|EEX16557.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp.
           SE45]
          Length = 242

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 15/234 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             + +   ++L      +++R K  +   + +++  +             YD    +   
Sbjct: 16  QLELAERREDLQSVAEALRDRFKVDHLVYHWVSANGEQ-------YGCGTYDPVWVERYL 68

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +        P+ W+ +   +    +           +   G + P+R   
Sbjct: 69  EKGYLRIDPVIQGCFQRFHPVDWKRLDWSSKAARA--FQWDAIAHGVGNQGYSIPIRGPN 126

Query: 127 HKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFK-KRSSAARNLTERETS 180
            +             A          +     +      LEL   +R   A+ L+ RE  
Sbjct: 127 GQFALFTVNHSCDDEAWAEFTALNRRDMILIAHYFNQKALELEPGRRPEPAQPLSPREIE 186

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + L   GY+  ++AE L +S HT+  Y+ SA  KL A+N   A+A+A+  G I
Sbjct: 187 AMTLIAVGYSRAQVAETLSISEHTLRVYIESARFKLGAMNTTHAVARALSRGLI 240


>gi|218532854|ref|YP_002423670.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218525157|gb|ACK85742.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 243

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 6/231 (2%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYT---INSALDFPRRQQLICELHNYDLDSGD 63
           +  ++ S +++   L  I  R+ A          I       R Q+    L N   +   
Sbjct: 15  SLDRAHSREDI---LRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWNR 71

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
           +       Y D  +    S      W  I+   V++   +  +   G      G   P+ 
Sbjct: 72  LYFSKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLA 131

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               + G + F    L ++             V+   L +    S     LT RE   LQ
Sbjct: 132 TLEEERGGLTFAGPRLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQ 191

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G T  EI E +G+S H V+ +L SA VKL  V+R QA+A+  R G I
Sbjct: 192 WVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242


>gi|163853910|ref|YP_001641953.1| autoinducer-binding domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665515|gb|ABY32882.1| Autoinducer-binding domain protein [Methylobacterium extorquens
           PA1]
          Length = 243

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 6/231 (2%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYT---INSALDFPRRQQLICELHNYDLDSGD 63
           +  ++ S +++   L  I  R+ A          I       R Q+    L N   +   
Sbjct: 15  SLDRAHSREDI---LRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWNR 71

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
           +       Y D  +    S      W  I+   V++   +  +   G      G   P+ 
Sbjct: 72  LYFSKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLA 131

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               + G + F    L ++             V+   L +    S     LT RE   LQ
Sbjct: 132 TLEEERGGLTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQ 191

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G T  EI E +G+S H V+ +L SA VKL  V+R QA+A+  R G I
Sbjct: 192 WVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242


>gi|117620077|ref|YP_855658.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561484|gb|ABK38432.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 264

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 77/226 (34%), Gaps = 4/226 (1%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +  +    + L++       F  + +        ++  +   +       D         
Sbjct: 23  TAADERTIVTLLRELSGRMGFDYFRLALIFPSTIQRPDVIIFNGCPQAWVDTYTSSGFFA 82

Query: 73  GDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            D  +    +   PI+W  +  +E   +  G+  ++L        GI  P        G 
Sbjct: 83  IDPIVKCAMTKSTPILWADVVNDEERCDEQGREMMQLANEYGICDGITLPWHGANGHVGL 142

Query: 132 VIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           + F +       + +            +      +     S    L+ RE    + A +G
Sbjct: 143 LSFITSTPRTQQQWLSAVPFISWLSMHIFEAVARVCLAGLSPHDALSLRELEVCRWAAEG 202

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +IA+ LG++  TV  +L +   KL A ++ QAI+ A++ G +
Sbjct: 203 KQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGMV 248


>gi|88797814|ref|ZP_01113402.1| LuxR, transcriptional regulator [Reinekea sp. MED297]
 gi|88779491|gb|EAR10678.1| LuxR, transcriptional regulator [Reinekea sp. MED297]
          Length = 240

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 88/233 (37%), Gaps = 11/233 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +++ S  EL   L  I   ++   F  +    AL        I    NY  +   + +  
Sbjct: 8   QQAQSTSELPEILESISQVVE---FDYFLFGLALPNSITHSDILMYDNYPGEWRRVYDES 64

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  + +  S  +P+ W  I E      S    +         AG + P+     +
Sbjct: 65  GYAKRDPIVQYSISNYMPVTWAQISESPSYSRSDLKIMWEAEASGLKAGFSLPIHGAVGE 124

Query: 129 NGYVIFTSEFLMLA-----NEVIIEAHGACYQVITDF--LELFKKRSSAARNLTERETSC 181
            G + F S            E I         +      L + + +   A  LT+RE  C
Sbjct: 125 FGMISFASNHNTDEQRLKYAEAIPVIQMLVPAIQDAVKRLRVSESKEPPA-KLTKREIEC 183

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  A +G +S EI++ LG S  T   +L +A  KL A NR QAI+KA+  G I
Sbjct: 184 LTWATEGKSSWEISQILGCSERTAIFHLSNAANKLGATNRYQAISKALLCGII 236


>gi|82703532|ref|YP_413098.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411597|gb|ABB75706.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 244

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 80/231 (34%), Gaps = 14/231 (6%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S++EL      I   +   +F        ++    +     L  Y  +     +     
Sbjct: 14  DSVEELHSATTTIARAMGFEHFLY---GVQVNTSLTRPYRFILSCYPEEWRKHYDKEGYA 70

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + H     +PIIW+    E                    +G +F V  G  +   
Sbjct: 71  NFDPTVSHCARTSIPIIWKK---EIFKGRRETRVRNEAKDCGLVSGASFSVHGGRGEAAM 127

Query: 132 VIFTSEFLMLANE-----VIIEAHGACYQVITDFLE--LFKKRSSAARN-LTERETSCLQ 183
           +   +       +      + +A      +        L K      +  LTERE  CL 
Sbjct: 128 LSLATSRESREAQNDILATMAKAQLLTCYLHEAVQRIVLSKGPLPVKKANLTEREQECLL 187

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G T  EIA  + +S  TV  +L +A  KL  VNR QAI++A+  G I
Sbjct: 188 WAAEGKTGWEIANIVKISERTVTFHLQNAIQKLGVVNRQQAISRALSMGLI 238


>gi|27376354|ref|NP_767883.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349494|dbj|BAC46508.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 2/223 (0%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNILIETY 72
           L +++  L  +   +    F  +  +          +             D+ +     +
Sbjct: 18  LPDVASILDAMSRTLGQHGFDYFCSSYVAPLSTESPREAVLAERLPAGFLDMYSEAQYVW 77

Query: 73  GDDFLFHFNSGLLPIIW-QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            D  L +  + L P  W +    +   E      VR         G+  PV     + G 
Sbjct: 78  HDPALRYCRTTLQPFRWFREAPYDPEREPRAVELVRRARDFGMVDGVVIPVISPAGRTGQ 137

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V F    + L    +   H          L+L    ++    L+ RE   L LA  G +S
Sbjct: 138 VWFGGAEIDLPERDLPALHLMALYAFDRVLKLRGLPAAPQLALSLREREVLTLAAVGRSS 197

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EIA+ L ++  TV A++ S   KL A  R QA+  A+R   I
Sbjct: 198 DEIADALAITGRTVKAHIKSCCKKLGAATRTQAVMIAMRDRII 240


>gi|27376173|ref|NP_767702.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349312|dbj|BAC46327.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 68/218 (31%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   ++ ++       F    +    +  +R   +     +     ++         D  
Sbjct: 23  VPDAMNALEAAFGRFGFETIIVTGLPNPDQRFAQMVLAKRWPAGWFNLYTQNNYDRFDPV 82

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +      + P  W     +  +E S    +   G      G   P+         V    
Sbjct: 83  VRLCRQSVNPFEWSEAPYDAELEPSAAEVMNRAGDFRMSRGFIVPIHGLTGYEAAVSLGG 142

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
             L L        H            L +     +  LT RE   +  A  G ++ EI E
Sbjct: 143 VHLDLNPRSKPALHLMAMYGFDHIRRLLEPTPYPSTRLTPREREVISWASQGKSAWEIGE 202

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L ++  T   +L +A  KL AVNR  A+A AIR   I
Sbjct: 203 ILHITQRTAEEHLATAARKLGAVNRTHAVALAIRHKII 240


>gi|88812489|ref|ZP_01127738.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis
           Nb-231]
 gi|88790275|gb|EAR21393.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis
           Nb-231]
          Length = 249

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 10/231 (4%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +  ++ +      +       +F      ++      +  +  +  +     D       
Sbjct: 17  ADGVEGVQRLCAALGEAYGFDHFIY---GASFPTSLIKPAVLVISGHPEAWRDHYQACGY 73

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  + H    + P+IWQ +  +  I+      ++        +G++  +R    + G
Sbjct: 74  LAVDPAVQHCTRSIRPLIWQDLMLDPKIDEKPFTVMQEAREFGLVSGVSLSIRGSRGELG 133

Query: 131 YVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQ 183
            + F+SE             I + +     V      L  + S       LT RE  CL 
Sbjct: 134 VLSFSSERTAQQTRSEIDSAIPDLYLLSAYVHEAVGRLVTQGSLPFNRPELTAREHECLL 193

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG+S  T   +L +A  +L+A +R QA+A+A+  G I
Sbjct: 194 WAAEGKTSWEIARILGISERTAIFHLQNAARRLNASSRQQAVARAVSQGLI 244


>gi|171316408|ref|ZP_02905627.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098441|gb|EDT43244.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 237

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 74/231 (32%), Gaps = 16/231 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S  ++          ++A  F   +    +  P  +       NY     D       
Sbjct: 15  AKSEADVF---LEFTADVRALGFEYCSFGLRVPLPVSKPQFMLQSNYPQTWVDRYVSQNY 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  + H  S + P+IW++  +   +E                 G   P        G
Sbjct: 72  FAVDPTVRHGLSQMSPLIWRADSQTQSVE-----FWDEAEHHGLRHGWCMPSISRTGAIG 126

Query: 131 YVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            V        +    + E               ++  L L K     A  LT RE   LQ
Sbjct: 127 LVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHL-LAKFVPEYAVELTARERETLQ 185

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  G T  EI + + +   TV  +L +A  KL+A N+ +A  KA   G +
Sbjct: 186 WSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAMLGLL 236


>gi|260770016|ref|ZP_05878949.1| transcriptional activator protein vanR [Vibrio furnissii CIP
           102972]
 gi|260615354|gb|EEX40540.1| transcriptional activator protein vanR [Vibrio furnissii CIP
           102972]
          Length = 240

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 13/232 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +  +S + L   L  + N I    F L+ ++        +       NY        +  
Sbjct: 12  QVITSYENLESTLAALNNIIDHEYF-LFGLSLQPTLTTSE--TIITDNYPASWRQQYDEA 68

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              + D  + +  +  LPI W  I    V  +                G + P+     +
Sbjct: 69  GFMHVDPIVQYSMTNFLPIRWSQIP---VASNQAHEMFEEARINGLKEGFSIPIHGLRGE 125

Query: 129 NGYVIFTSEFL---MLANEVIIEAHGA---CYQVITDFLELFKKRSSAARNLTERETSCL 182
            G + F +       L  + I  +          I +     K  +     LT RE  CL
Sbjct: 126 FGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCHKDAAPRIE-LTARENQCL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A +G ++ EIA+ +  S  TV  ++ +A  KL A NR QAI KAI  GYI
Sbjct: 185 TWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAILGGYI 236


>gi|300693708|ref|YP_003749681.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (luxr family) [Ralstonia
           solanacearum PSI07]
 gi|299075745|emb|CBJ35050.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (LuxR family) [Ralstonia
           solanacearum PSI07]
          Length = 238

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 14/236 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            +  + ++S  ++   +        A  F           P  +  I  L+NY     + 
Sbjct: 10  DIFSEAATSTSDVFAHIEAAA---LALGFEHVAYGFRAPLPLSEPKIILLNNYPQAWRER 66

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                  + D  + H      P+IW     +                     G A     
Sbjct: 67  YLEAGYLHVDPSVAHACRSQAPVIWSDPLFQYTPA-----LWDEAQAQGLRVGWAQSSLD 121

Query: 125 GFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSS--AARNLTERE 178
                G +  +     L    + +         +        L +   +  +  +LT RE
Sbjct: 122 SLGVGGMLSLSRSCEPLTARELADNTRRMQWLTHMAHLALSRLLRADLAGDSDDSLTGRE 181

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              ++   DG ++++IA+ L +S +TV+ ++ +A  KL AVN+  A+ +A   GY+
Sbjct: 182 VEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLGYL 237


>gi|315182540|gb|ADT89453.1| Transcriptional activator protein vanR [Vibrio furnissii NCTC
           11218]
          Length = 240

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 13/232 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +  +S + L   L  + N I    F L+ ++        +       NY        +  
Sbjct: 12  QVITSYENLETTLAALNNIIDHEYF-LFGLSLQPTLTTSE--TLITDNYPASWRQQYDEA 68

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              + D  + +  +  LPI W  I    V  +                G + P+     +
Sbjct: 69  GFMHVDPIVQYSMTNFLPIRWSQIP---VASNQAHEMFEEARINGLKEGFSIPIHGLRGE 125

Query: 129 NGYVIFTSEFL---MLANEVIIEAHGA---CYQVITDFLELFKKRSSAARNLTERETSCL 182
            G + F +       L  + I  +          I +     K  +     LT RE  CL
Sbjct: 126 FGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCHKDAAPRIE-LTARENQCL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A +G ++ EIA+ +  S  TV  ++ +A  KL A NR QAI KAI  GYI
Sbjct: 185 TWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAILGGYI 236


>gi|188584215|ref|YP_001927660.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347713|gb|ACB83125.1| transcriptional regulator, LuxR family [Methylobacterium populi
           BJ001]
          Length = 243

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 6/231 (2%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYT---INSALDFPRRQQLICELHNYDLDSGD 63
           +  ++ S +++   L  I  R+ A          I       R Q+    L N   +   
Sbjct: 15  SLDRAHSREDI---LRAIMPRLNAMGIEYVISAMIPQKRLPARTQKNFVILENTSDEWNR 71

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
           +       Y D  +    S      W       + +   +  +          G   P+ 
Sbjct: 72  LYFSKGYMYFDPIVQATLSSTTGFRWSETDPAGLQDPKARQVMNEAVEFGLGDGFTVPLA 131

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               + G + F    L ++             V+   L +    S     LT RE   LQ
Sbjct: 132 TLEEERGGLTFAGRQLDISPGQRGMLTLIASYVVGQTLLIDNGPSERRMGLTPRERESLQ 191

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G T  EI E +G+S H V+ +L SA VKL  V+R QA+A+  R G I
Sbjct: 192 WVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242


>gi|260461224|ref|ZP_05809472.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785401|ref|YP_004144877.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032761|gb|EEW34024.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171289|gb|ADV14827.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 248

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 79/228 (34%), Gaps = 13/228 (5%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPR------RQQLICELHNYDLDSGDIPNIL 68
           ++L   L        A NF    I      P        +     + NY  +  +    +
Sbjct: 24  EQLFELLSAF-----ALNFDCPWIAYGPLAPEQRVLKPTRPDSAMMWNYPDEWQERYLKM 78

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +     G+ P  W  +        + +  +   G     +G+  P+      
Sbjct: 79  GYAKIDPLIKKGRKGVGPFRWSEVYTHESTTENERRVLDEAGTFGLKSGVTVPLHGPAGS 138

Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAG 186
              + F  S    L N  I     A  Q      +L  +RSS  A  +++RE  C+    
Sbjct: 139 FKLMCFAKSADCELENRAITYLQIAAVQFHLRVAKLGTQRSSEHAYKISDRERECIHWIS 198

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G TS EI   LG S +TV+ ++ +   KLD   R    AKA+  G I
Sbjct: 199 KGKTSGEIGTILGRSQNTVDFHVKNVMRKLDTTRRTALAAKAVELGII 246


>gi|254473001|ref|ZP_05086399.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062]
 gi|211957722|gb|EEA92924.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062]
          Length = 239

 Score =  165 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 1/214 (0%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             I    ++  F  + + +  +          L  +  +             D  +    
Sbjct: 25  KRIAELGQSFGFTSFCLAAIPEAGASFDGSIMLSGWRPEWQQRYLDRDYVQNDPIVAKAR 84

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           +   P +W S+  +  + ++ Q  +        + G+  PV       G +IF    + L
Sbjct: 85  TASRPFLWSSVARDRNLTAAAQQVLSEARDYGMYDGVCVPVHGLQGYQGMLIFGGPEVRL 144

Query: 142 ANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
               I   H           EL     +     LT RE  CL+ +  G TS EI++ L +
Sbjct: 145 NEREISVLHLVGIYASNKVRELVGANTNRPRHRLTPRELECLKWSAAGKTSWEISQILNI 204

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S HT + YL SA  KL A NR  A+A+  R G I
Sbjct: 205 SQHTADWYLASAARKLHAANRTHAVAEGFRLGLI 238


>gi|149913176|ref|ZP_01901710.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           AzwK-3b]
 gi|149813582|gb|EDM73408.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           AzwK-3b]
          Length = 242

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 15/230 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +S + +L   +  +++ I   +   + ++S  +             Y      +      
Sbjct: 19  ASDIDDLQRLIERLRDEIGVDHVVYHWVSSGGEQ-------YGCGTYPAAWVQLYVAKDY 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +        P+ W+ +   +    +           +   G + P+R    +  
Sbjct: 72  LRIDPVVQGCYQTFHPVDWKRLDWSSRAARA--FLSDAVAHGIGNQGYSVPLRGPNGQFA 129

Query: 131 YVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSS-AARNLTERETSCLQL 184
               +      A  +  + H        +      L L   R    A+ L+ RE   + L
Sbjct: 130 LFSVSHHCTDEAWAMFTDTHRRTLILIAHYFNHKALLLEPGRCPLTAQPLSPREVDVITL 189

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              GY+  ++AE L +S HT+  Y+ SA +KL A+N + A+++AI  G I
Sbjct: 190 LAMGYSRAQVAETLMISEHTLRTYVESARLKLGAINTLHAVSRAITRGLI 239


>gi|170697219|ref|ZP_02888313.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137839|gb|EDT06073.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 237

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 74/231 (32%), Gaps = 16/231 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S  ++          ++A  F   +    +  P  +       NY     D       
Sbjct: 15  AKSEADVF---LEFTADVRALGFEYCSFGLRIPLPVSKPQFMLQSNYPQTWVDRYVSQNY 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  + H  S + P+IW++  +   +E                 G   P        G
Sbjct: 72  FAVDPTVRHGLSQMSPLIWRADSQTQSVE-----FWDEAEHHGLRHGWCMPSISRTGAIG 126

Query: 131 YVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            V        +    + E               ++  L L +     A  LT RE   LQ
Sbjct: 127 LVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHL-LARFVPEYAVELTARERETLQ 185

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  G T  EI + + +   TV  +L +A  KL+A N+ +A  KA   G +
Sbjct: 186 WSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAMLGLL 236


>gi|184156458|ref|YP_001844797.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
 gi|183208052|gb|ACC55450.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
          Length = 238

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 76/224 (33%), Gaps = 12/224 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   +  I +R+    F              +     L+NY                D  
Sbjct: 21  LFDIVKSIASRL---GFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVEQQYVKIDPT 77

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           + H    L P++W S   +T  E                 G A   R      G +    
Sbjct: 78  VQHCMVSLQPLVWSSQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLAR 134

Query: 137 EFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYT 190
               L+ +         +     V +   ++      A  NL  T RE   L+   +G T
Sbjct: 135 SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKT 194

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S EIA+ LG++  TVN +L ++  KL+  N+I A  +A+  G +
Sbjct: 195 SAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|156933489|ref|YP_001437405.1| DNA-binding transcriptional activator SdiA [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156531743|gb|ABU76569.1| hypothetical protein ESA_01307 [Cronobacter sakazakii ATCC BAA-894]
          Length = 241

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 19/245 (7%)

Query: 2   SENTLTGKKSSSL-------QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL 54
           S+     ++ ++         ++   L      ++   +  + +      P  +  +   
Sbjct: 4   SDFFNWRREMTTRFQEIQDSSDIYSLLKTETQNME---YDYFALCVRHPVPFTRPKLTLH 60

Query: 55  HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114
             Y     +          D  L   N  + P+ W         E               
Sbjct: 61  TTYPEAWLEHYQAENYYVIDPVLKPANYLVGPLSWNDALFAGAAEE----LWNAARDHGL 116

Query: 115 FAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
             G+   V       G++  +        M  +E+ +       Q +   + L    ++ 
Sbjct: 117 VKGVTQCVIAPNRAQGFLSVSGTSPRGHSMADDELALRLQHLVEQSLVTMMRLEDPAATV 176

Query: 171 AR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L++RE   LQ   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A 
Sbjct: 177 LEMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAA 236

Query: 230 RFGYI 234
             G I
Sbjct: 237 AIGLI 241


>gi|254477011|ref|ZP_05090397.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp.
           R11]
 gi|214031254|gb|EEB72089.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp.
           R11]
          Length = 239

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 80/231 (34%), Gaps = 15/231 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
            +S++  L   +  +       +   + ++SA D             Y  +         
Sbjct: 16  AASTVDGLREIVERVCESFGVDHAMYHWVDSAGDH-------YYFGTYKDEWVARYQEKS 68

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +        P+ W+ +   +      +         +   G + P+R    + 
Sbjct: 69  YVRVDPVIIGCYQRFHPVDWRRLDWSSKPAR--EFMQDARDHDVGNQGYSIPIRGPKGQF 126

Query: 130 GYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSS-AARNLTERETSCLQ 183
                ++       +  IE H        + +    LE    R     + L+ RE   L 
Sbjct: 127 ALFTVSNNCDDATWDNFIERHSRDLILMGHYLNRKVLEFEPDRGPGQVQPLSPREIDALT 186

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   GY+  ++A+ L +S HT+  Y+ SA  KL A+N   AIA+A+  G I
Sbjct: 187 LLAMGYSRAQVAQTLSISEHTLRVYIESARFKLGAINTTHAIARALSLGLI 237


>gi|17548999|ref|NP_522339.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 248

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 14/229 (6%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S  ++   +        A  F           P  +  +  L+NY              
Sbjct: 27  ASTSDVFEHIEAAA---LALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRARYLEAGYL 83

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
           + D  +        PI+W     + V                   G A          G 
Sbjct: 84  HVDPSVAQACRSQAPIVWSDRLFQDVPA-----LWDEAKAHGLRVGWAQSSLDSLGVGGM 138

Query: 132 VIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLA 185
           +  +     L+   + E         +        L +   +  +  NLT RE   ++  
Sbjct: 139 LSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYSDDNLTNREVEVMKWT 198

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++++IA+ L +S +TV+ ++ +A  KL AVN+  A+ +A   GY+
Sbjct: 199 ADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLGYL 247


>gi|171315924|ref|ZP_02905153.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098927|gb|EDT43717.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 228

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 15/234 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  ++ S  ++   +      +    F +    +    P  +      + Y         
Sbjct: 3   TLSRALSFDDVFEIVAAQARALD---FEMCAYGARDPLPVTRPTFRTRNTYPDSWQQRYV 59

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  + +      P++W       V   +               G + P+R   
Sbjct: 60  EGNYFARDPVVRYGLIYTSPLVW------PVDACADAPFWEEAKAHGVAHGWSQPIRDKH 113

Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRSSAAR--NLTERETS 180
            +            +++  +           +        L    ++A +    T RE  
Sbjct: 114 GRIAMWSVARSADPISDLELAATEGRLIYLAHAAHAVNSRLADAPAAAMQMGPFTTREKE 173

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+ A DG T+ EIA  L +S  T+  ++ +   KL++VN+ QAI KA+  G I
Sbjct: 174 VLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227


>gi|260431508|ref|ZP_05785479.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415336|gb|EEX08595.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 239

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 15/240 (6%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+     + SS+L EL      ++N +K  N   + ++ A D             Y   
Sbjct: 7   LSQVLEDLENSSTLDELGAVAERLRNALKIDNIVYHWVDGAGDQ-------YGCTTYSDS 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                        D  +        P+ W+S+                    +   G + 
Sbjct: 60  WAQRYRERNYHRIDPVILGCFQRFHPVDWKSLDWSGKA--VRAFLQDALEHGVGNQGFSI 117

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFK-KRSSAARNL 174
           P+R    +               +  I     +     +      LE  + +R  + R L
Sbjct: 118 PIRGPNGQFALFTANHSCSDAEWQNFIAKYGRDLILIAHYFNRKALEFEQNRRPDSPRAL 177

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   + L   GY+  ++A  L +S HT+  Y+ SA  KL A+N   AIA A+  G I
Sbjct: 178 SPREIDAMTLLALGYSRAQVAHSLSISEHTLRVYIESARAKLGALNTTHAIATALSRGLI 237


>gi|114764851|ref|ZP_01444033.1| autoinducer-binding transcriptional regulator LuxR [Pelagibaca
           bermudensis HTCC2601]
 gi|114542737|gb|EAU45760.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           HTCC2601]
          Length = 223

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 15/230 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
              L++L      +++ +   +   + I +                Y  D          
Sbjct: 1   MQRLEDLQHITEQMRDCLGVDHLVYHWIGAQGAQ-------YGCGTYTPDWLARYVAQGY 53

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +        P+ W+++   +    +           L   G   P+R    +  
Sbjct: 54  LRVDPVIQGCFQRFHPVDWKALDWSSKAARA--FLKDALRHGLGNQGFTVPIRGPNGQFA 111

Query: 131 YVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQL 184
                             +   E   A + +    LEL    +S A   L+ RE   ++L
Sbjct: 112 LFTVNHGCEDALWSSFIAQWRAELILAAHGINAKALELMPGPASQAPVALSPRELDAMRL 171

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +  ++A +L +S HTV  Y+  A  KL A+N   A+A+A+  G I
Sbjct: 172 LASGLSRAQVAAELNISEHTVRVYIEGARFKLGALNTTHAVARAMSCGLI 221


>gi|260598411|ref|YP_003210982.1| DNA-binding transcriptional activator SdiA [Cronobacter turicensis
           z3032]
 gi|260217588|emb|CBA31841.1| Regulatory protein sdiA [Cronobacter turicensis z3032]
          Length = 241

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 19/245 (7%)

Query: 2   SENTLTGKKSSSL-------QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL 54
           S+     ++ ++         ++   L      ++   +  + +      P  +  +   
Sbjct: 4   SDFFNWRREMTTRFQEIQDSGDIYSLLKTETQNME---YDYFALCVRHPVPFTRPKLTLH 60

Query: 55  HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114
             Y     +          D  L   N  + P+ W         E               
Sbjct: 61  TTYPEAWLEHYQAENYFVIDPVLKPANYLIGPLSWNDALFAGAAEE----LWNAARDHGL 116

Query: 115 FAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
             G+   V       G++  +        M  +E+ +       Q +   + L    ++ 
Sbjct: 117 VKGVTQCVIAPNRAQGFLSVSGTSPRGHSMPDDELALRLQHLVEQSLVAMMRLEDPAATV 176

Query: 171 AR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L++RE   LQ   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A 
Sbjct: 177 LEMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAA 236

Query: 230 RFGYI 234
             G I
Sbjct: 237 AIGLI 241


>gi|311105770|ref|YP_003978623.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760459|gb|ADP15908.1| bacterial regulatory protein, LuxR family protein 7 [Achromobacter
           xylosoxidans A8]
          Length = 237

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 14/238 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  LT   ++S Q +  ++  +   +    F+          P        + +Y +   
Sbjct: 7   DLLLTTNSATSEQAVFTKVAAVAQEL---GFSYCAYGLRAALPFTNPQFVMISDYPIAWQ 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +          D  + H +   +PI+W         E            +    G +   
Sbjct: 64  ERYAQARYLEIDPTVKHCSRSSIPIVWSDRVFAETPE-----LWDEAQAVGLCVGWSQSN 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKR--SSAARNLTE 176
              +   G +    +   L++  ++                F ++   R   +    LT 
Sbjct: 119 LDAYGTGGMLTLARQKEQLSDAELLSKELRMRWLVTAAHLAFSKVLLPRFKLAPNVPLTR 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RET  L+ A DG TS +++E L ++  TV  +  +A  KL A NR  A+A+A   G +
Sbjct: 179 RETEILKWAADGKTSSDVSEILAIAESTVRFHTKNAISKLGARNRTAAVARAALLGLL 236


>gi|59940143|gb|AAX12610.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 89/231 (38%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ + +    LI        +  Y     L    ++  +   +                
Sbjct: 14  TSVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTENNML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E  + ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       +      S+    LTERET CL 
Sbjct: 134 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243


>gi|170697389|ref|ZP_02888481.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137720|gb|EDT05956.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 228

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 15/234 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  ++ S  ++   +      +    F +    +    P  +      + Y         
Sbjct: 3   TLSRALSFDDVFEIVAAQARALD---FEMCAYGARDPLPVTRPTFRTRNTYPESWQQRYL 59

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  + +      P++W       V   + +             G + P+R   
Sbjct: 60  EGNYFARDPVVRYGLIYTSPLVW------PVDACADEPFWEEAKAHGVAHGWSQPIRDKH 113

Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRSSAAR--NLTERETS 180
            +            +++  +           +        L    ++A +    T RE  
Sbjct: 114 GRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREKE 173

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+ A DG T+ EIA  L +S  T+  ++ +   KL++VN+ QAI KA+  G I
Sbjct: 174 VLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227


>gi|95108205|emb|CAD17929.2| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Ralstonia
           solanacearum GMI1000]
          Length = 238

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 14/229 (6%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S  ++   +        A  F           P  +  +  L+NY              
Sbjct: 17  ASTSDVFEHIEAAA---LALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRARYLEAGYL 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
           + D  +        PI+W     + V                   G A          G 
Sbjct: 74  HVDPSVAQACRSQAPIVWSDRLFQDVPA-----LWDEAKAHGLRVGWAQSSLDSLGVGGM 128

Query: 132 VIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLA 185
           +  +     L+   + E         +        L +   +  +  NLT RE   ++  
Sbjct: 129 LSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYSDDNLTNREVEVMKWT 188

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++++IA+ L +S +TV+ ++ +A  KL AVN+  A+ +A   GY+
Sbjct: 189 ADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLGYL 237


>gi|59940069|gb|AAX12573.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ + +    LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGNRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTENNML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E  + ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       +      S+    LTERET CL 
Sbjct: 134 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243


>gi|299069138|emb|CBJ40391.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (LuxR family) [Ralstonia
           solanacearum CMR15]
          Length = 238

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 75/228 (32%), Gaps = 14/228 (6%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           S  ++   +        A  F           P  +  +  L+NY              +
Sbjct: 18  STSDVFEHIEAAA---LALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRVRYLEAGYLH 74

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D  +        PI+W     + V                   G A          G +
Sbjct: 75  VDPSVAQACRSQAPIVWSDRLFQDVPA-----LWDEAKAHGLRVGWAQSSLDSLGVGGML 129

Query: 133 IFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAG 186
             +     L+   + E         +        L +   +     +LT RE   ++   
Sbjct: 130 SLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYVDDSLTNREVEVMKWTA 189

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG ++++IA+ L +S +TV+ ++ +A  KL AVN+  A+ +A   GY+
Sbjct: 190 DGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLGYL 237


>gi|313110609|ref|ZP_07796491.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882993|gb|EFQ41587.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 226

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 75/232 (32%), Gaps = 14/232 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            + ++ +E    +  I        F  ++  +   FP        L NY  +        
Sbjct: 2   SRITTEEEFFSLVLEI---CGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISE 58

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
             T  D  + H      P+IW     +       +             G + PVR  +  
Sbjct: 59  DYTSIDPIVRHGLLEYTPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGL 113

Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182
              +        +A   I+E           +   F +L   R        LT RET  L
Sbjct: 114 ISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEML 173

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    G T  EI   L +   TV  ++ +A  KL++ N+ +A  KA   G +
Sbjct: 174 KWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 225


>gi|330828294|ref|YP_004391246.1| LuxR-like protein [Aeromonas veronii B565]
 gi|328803430|gb|AEB48629.1| LuxR-like protein [Aeromonas veronii B565]
          Length = 268

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 89/231 (38%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ + +    LI        +  Y     L    ++  +   +                
Sbjct: 22  TSVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTENNML 81

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E  + ++      + L        GI+FP+     +NG
Sbjct: 82  ACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHGAAGENG 141

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       +      S+    LTERET CL 
Sbjct: 142 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLF 200

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 201 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 251


>gi|222149185|ref|YP_002550142.1| transcriptional regulator protein [Agrobacterium vitis S4]
 gi|221736170|gb|ACM37133.1| transcriptional regulator protein [Agrobacterium vitis S4]
          Length = 243

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 79/229 (34%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             K++ +++ L        +R   +N  L         P +Q     L ++  +   +  
Sbjct: 15  QIKQTDTVKNLVDLTKHATSRYGVKNIVLGFPPEIGMLPSQQMQGILLADWPDEWSHLYF 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                + D  + H  S     +W    +   I    +  +          G   P+    
Sbjct: 75  RDNLAFQDPAIRHIVSSEPSFVWSDFSKTLPISRDEKWLMDQAKEFFVSNGFTLPILSLD 134

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
            +   V F    +  + +           V    LEL+         LT RE   +    
Sbjct: 135 GRRAGVTFAGSDIDDSPQARTGMALIASLVFARALELYGANQKQTTRLTPREREVIGWIA 194

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235
           +G T  EI+   G+S   V  ++G+  +KL AV+R  AIA+A R   IC
Sbjct: 195 NGKTDWEISVIFGVSEKAVTKHVGNIMMKLGAVSRSHAIAEAFRQKLIC 243


>gi|332875591|ref|ZP_08443403.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6014059]
 gi|332736164|gb|EGJ67179.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6014059]
          Length = 238

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 75/224 (33%), Gaps = 12/224 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   +    +R+    F              +     L+NY                D  
Sbjct: 21  LFDIVKSTASRL---GFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVEGQYVKIDPT 77

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           + H    L P++W S   +T  E                 G A   R      G +    
Sbjct: 78  VQHCMVSLQPLVWSSQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLAR 134

Query: 137 EFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYT 190
               L+ +         +     V +   ++      A  NL  T RE   L+   +G T
Sbjct: 135 SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKT 194

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S EIA+ LG++  TVN +L ++  KL+  N+I A  +A+  G +
Sbjct: 195 SAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|169797684|ref|YP_001715477.1| autoinducer-binding transcriptional regulator [Acinetobacter
           baumannii AYE]
 gi|213155522|ref|YP_002317567.1| eR transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|215485038|ref|YP_002327279.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB307-0294]
 gi|239503083|ref|ZP_04662393.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB900]
 gi|301348492|ref|ZP_07229233.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB056]
 gi|301513441|ref|ZP_07238678.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB058]
 gi|301597204|ref|ZP_07242212.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB059]
 gi|332853574|ref|ZP_08434826.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013150]
 gi|332869309|ref|ZP_08438707.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013113]
 gi|169150611|emb|CAM88520.1| putative Autoinducer-binding transcriptional regulator (LuxR
           family) [Acinetobacter baumannii AYE]
 gi|193076010|gb|ABO10598.2| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978]
 gi|213054682|gb|ACJ39584.1| eR transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|213987791|gb|ACJ58090.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB307-0294]
 gi|323516195|gb|ADX90576.1| autoinducer-binding transcriptional regulator [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332728538|gb|EGJ59911.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013150]
 gi|332732817|gb|EGJ64032.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013113]
          Length = 238

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 70/210 (33%), Gaps = 9/210 (4%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F              +     L+NY                D  + H    L P++W 
Sbjct: 32  LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMVSLQPLVWS 91

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           S   +T  E                 G A   R      G +        L+ +      
Sbjct: 92  SQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148

Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              +     V +   ++      A  NL  T RE   L+   +G TS EIA+ LG++  T
Sbjct: 149 TNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           VN +L ++  KL+  N+I A  +A+  G +
Sbjct: 209 VNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|254438192|ref|ZP_05051686.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307]
 gi|198253638|gb|EDY77952.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307]
          Length = 256

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 82/236 (34%), Gaps = 15/236 (6%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            +T  +++ L  L   +  +++     +   + +++  +             Y L     
Sbjct: 9   LVTLDQATELSALQDTIVRLRDHYGVAHMVYHWVSADGEQ-------YGCGTYPLSWVQH 61

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  +        P+ W+++   +    +           +   G + P+R 
Sbjct: 62  YVQKDYLRIDPVIIGCFKQFHPVDWKALDWSSKAAVA--FRAEAMQAGVGNQGYSIPIRG 119

Query: 125 GFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178
              +      ++                +     +      LE+  KR     + L+ RE
Sbjct: 120 PSGQFALFSLSNNTDDTDWAAFTESNRRDLILCAHSFNQKALEVETKRMPDPVKPLSGRE 179

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L     GY+  ++A+ L +S HT+ AY+ SA  KL A N + A+A+A+  G I
Sbjct: 180 IDVLTYLAMGYSRSQVAQTLTISEHTLRAYVESARFKLGASNTMHAVARAVSEGLI 235


>gi|260557627|ref|ZP_05829841.1| transcriptional activator protein phzR [Acinetobacter baumannii
           ATCC 19606]
 gi|260408800|gb|EEX02104.1| transcriptional activator protein phzR [Acinetobacter baumannii
           ATCC 19606]
          Length = 238

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F              +     L+NY                D  + H  + L P++W 
Sbjct: 32  LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMASLQPLVWS 91

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           S   +T  E                 G A   R      G +        L+ +      
Sbjct: 92  SQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148

Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              +     V +   ++      A  NL  T RE   L+   +G TS EIA+ LG++  T
Sbjct: 149 TNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           VN +L ++  KL+  N+I A  +A+  G +
Sbjct: 209 VNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|115360781|ref|YP_777918.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|172065092|ref|YP_001815804.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115286109|gb|ABI91584.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
 gi|171997334|gb|ACB68251.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 228

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 15/234 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  ++ S  ++   +      +    F +    +    P  +      + Y         
Sbjct: 3   TLSRALSFDDVFEIVAAQARALD---FEMCAYGARDPLPVTRPTFRTRNTYPESWQQRYI 59

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  + +      P++W       V   + +             G + P+R   
Sbjct: 60  EGNYFARDPVVRYGLIYTSPLVW------PVDACADESFWEEAKAHGVAHGWSQPIRDKH 113

Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRSSAAR--NLTERETS 180
            +            +++  +           +        L    ++A +    T RE  
Sbjct: 114 GRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREKE 173

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+ A DG T+ EIA  L +S  T+  ++ +   KL++VN+ QAI KA+  G I
Sbjct: 174 VLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227


>gi|15597095|ref|NP_250589.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAO1]
 gi|116049852|ref|YP_791341.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892145|ref|YP_002441012.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58]
 gi|254234991|ref|ZP_04928314.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719]
 gi|254240292|ref|ZP_04933614.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192]
 gi|6014709|gb|AAF01471.1|AF190630_1 PhzR [Pseudomonas aeruginosa PAO1]
 gi|9947891|gb|AAG05287.1|AE004616_1 quorum-sensing control repressor [Pseudomonas aeruginosa PAO1]
 gi|115585073|gb|ABJ11088.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166922|gb|EAZ52433.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719]
 gi|126193670|gb|EAZ57733.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192]
 gi|218772371|emb|CAW28153.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58]
          Length = 237

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 75/232 (32%), Gaps = 14/232 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            + ++ +E    +  I        F  ++  +   FP        L NY  +        
Sbjct: 13  SRITTEEEFFSLVLEI---CGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISE 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
             T  D  + H      P+IW     +       +             G + PVR  +  
Sbjct: 70  DYTSIDPIVRHGLLEYTPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGL 124

Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182
              +        +A   I+E           +   F +L   R        LT RET  L
Sbjct: 125 ISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEML 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    G T  EI   L +   TV  ++ +A  KL++ N+ +A  KA   G +
Sbjct: 185 KWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236


>gi|146312149|ref|YP_001177223.1| DNA-binding transcriptional activator SdiA [Enterobacter sp. 638]
 gi|145319025|gb|ABP61172.1| transcriptional activator SdiA [Enterobacter sp. 638]
          Length = 240

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  S  E+      +Q + +A  F  Y++      P  +  I    +Y  +    
Sbjct: 14  FLRFQEMGSADEVY---EELQRQTQALEFDYYSLCVRHPVPFTRPKISIHSSYPAEWISQ 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L          +   +     + +  Q             GI   + L
Sbjct: 71  YQSENYYAIDPVLKR-----ENFLQGHLPWTDALFADAQALWDGARDHGLRKGITQCLML 125

Query: 125 GFHKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERET 179
             H  G++  +       +M ++E+ +         +T  L    +         ++RE 
Sbjct: 126 PNHALGFLSVSRTSQFGKMMDSDEIELRLQVLVQMALTTLLRFEHEMVMPPEMKFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G+I
Sbjct: 186 EILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGFI 240


>gi|46370360|gb|AAS89968.1| transcriptional regulator [Agrobacterium vitis]
          Length = 230

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 87/220 (39%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  + +   A+ F +  + SA            + N+  D     ++        
Sbjct: 12  DVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGS--SVITNWPADFLSEYDMASLLSSSP 69

Query: 76  FLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
                 +  +P+++   +        + +L+  L        G  FPV       G V  
Sbjct: 70  MFNRLRNTSIPVVFDIHVVARERDPKTVELATDLFLRFGMPRGACFPVHDAHGNRGAVNI 129

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             E    +   ++  H     V     E+ +  +     LTERE  CL     G TS EI
Sbjct: 130 CGEMPAFSFVDMVLLHYLAGHVFNRLAEIRELDARVTETLTEREIECLTWTAAGKTSVEI 189

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE +GLS HT+N YL  AT KLD VNR QA+AKA+R   I
Sbjct: 190 AEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229


>gi|262196287|ref|YP_003267496.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262079634|gb|ACY15603.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM
           14365]
          Length = 254

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 77/228 (33%), Gaps = 8/228 (3%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +     L           F      +             L+ Y     D        Y D
Sbjct: 25  EHAQSILQDTLATYGFDFFCFAIYGAPRGAIAIDNYHLLLNAYPNAWADRYYEKHYWYSD 84

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             L H      PI W ++Q +    +S +  +R        +G+   VR    + G +  
Sbjct: 85  PVLAHCGRSPTPIDWTTVQNQPAQPASAEQVMREAHEHDLCSGVTVTVRDVSGRLGILSL 144

Query: 135 TSEF------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAG 186
            +               I  A      ++      F  R    +   L+ERE  CL+   
Sbjct: 145 ATRDVYSAELRDRIRHAIPIAQFVLSHLVEKLEAHFHVRLEDLQRYKLSERERECLRWVA 204

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G TS EI   LG++  T   +L +A  KL AVNR  A+A+A++ G I
Sbjct: 205 AGKTSWEIGHILGIAERTAIFHLNNAMKKLGAVNRSHAVARALQHGVI 252


>gi|260773944|ref|ZP_05882859.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP
           69.14]
 gi|260610905|gb|EEX36109.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP
           69.14]
          Length = 240

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 82/230 (35%), Gaps = 13/230 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
             S Q L P L  + + I+      +    +L             NY L      +    
Sbjct: 14  IDSFQALQPTLAKMNHLIEHE---YFLFGLSLQTTLTSNDTLIADNYPLAWRQQYDESQF 70

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  + +  +  LPI W  I+         Q+            G + PV     + G
Sbjct: 71  MLIDPIVRYSMTNFLPIRWSEIRAHHQDS---QIIFEEARLNGLKEGFSIPVHGLRGEFG 127

Query: 131 YVIFTSEFLM------LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
            + F +           A +          Q I + +   +     A  LT RE  CL  
Sbjct: 128 MLSFATSDTRHYDLNLPAIQASQLLVPLLAQNIDNIVRCHRDAKPRAE-LTCREGQCLSW 186

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G ++ EIA+ +  S  TV  +L +A  KL A NR QAI KAI  GYI
Sbjct: 187 AAEGKSAWEIAQIINTSERTVKFHLSNACKKLGATNRYQAITKAILGGYI 236


>gi|86138963|ref|ZP_01057534.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           MED193]
 gi|85824194|gb|EAQ44398.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           MED193]
          Length = 255

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 17/229 (7%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +L+ L   +  I       +   + ++SA D             Y             T 
Sbjct: 35  TLEGLQSIIECICKVFAIDHAMYHWVDSAGDH-------YYFGTYSEAWTQQYQEKNYTR 87

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGY 131
            D  +        P+ W+ +   +      +              G + P+R    +   
Sbjct: 88  IDPVVIGCYQRFHPVDWRRLDWSSKP---AREFFDAAMEHGVGNQGYSIPIRGPNGQFAL 144

Query: 132 VIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185
              +      A +   +          +      LE    R+   A+ L+ RE   L L 
Sbjct: 145 FSVSHHCDDAAWDKFCDQNSRDLILIGHYFNRKALEFEPDRAPEQAQPLSPRELDALTLL 204

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G GY+  ++A+ L +S HT+  Y+ SA  KL A+N   AIA+A+  G I
Sbjct: 205 GIGYSRAQVAQTLSISEHTLRVYIESARFKLGALNTTHAIARAVSCGLI 253


>gi|86356503|ref|YP_468395.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280605|gb|ABC89668.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 248

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 83/220 (37%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   L  +    ++R F +  +        +      + ++  +   + +         
Sbjct: 30  DIFRFLKRVTEAYRSRAFMVLNLPPTTSLDLQGS--TVITSWPAELLALYDQEALMVNSP 87

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   +E  +  +    L   L        G  FP        G V F
Sbjct: 88  VLRRLRTSTRPFFYDMTRETWSRDDGKSVLVTGLFERFRMMRGAYFPTHEASGLRGAVSF 147

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       V     E+    +    +LT+RE  CL     G TS EI
Sbjct: 148 AGDREPFSAAEMRELCYIAIHVFDRLAEIRNLDTRMTDSLTDREIDCLNWTAAGKTSAEI 207

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 208 AEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 247


>gi|166798330|gb|ABY89693.1| transcriptional regulator [Mesorhizobium loti]
          Length = 243

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 2/230 (0%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             + +++   +  RL  I            T+        +Q+    L ++  +  +   
Sbjct: 13  QLQHAATAAAVCERLLGITADFGLTALMAGTVPQPGTPAGQQKQHVLLCDWPGEWLERYV 72

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  + H      P  W+   +   I+ S    +   G      G+AFP+    
Sbjct: 73  ARNYVDHDPVVSHMKQLQAPFQWREASQSIRIDKSSGEVMGDAGAFKLRDGLAFPLVTLD 132

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQL 184
            +   V    E + L+     +        +   ++L    S +  +  LT RE  CLQ 
Sbjct: 133 GQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMASKSIDHIVLTPRERECLQW 192

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G +  EI++ LG+S HT   +L +A  KL AVNR+QA+A+AIR GYI
Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|254485722|ref|ZP_05098927.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           GAI101]
 gi|214042591|gb|EEB83229.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           GAI101]
          Length = 239

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 29/239 (12%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +K+ +L  L      ++  +   +   + ++SA D             Y  +        
Sbjct: 15  EKTDTLDGLQTATEALRTFLGVAHIVYHWVDSAGDQ-------YGCGTYSPEWRSRYLDQ 67

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESS------------GQLSVRLEGGLLPFA 116
                D  +        P+ W+ +   +    +               +V + G    FA
Sbjct: 68  NYLRVDPVVSGCFQRFHPVDWKRLDWSSKAARALLTEAIDHGVGNQGFTVPIRGPNGQFA 127

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLT 175
              F V      + +  FT        ++I+ AH    +     LE    R+   A+ L+
Sbjct: 128 --LFTVNDNCTDDAWQAFTQANR---RDLILIAHYFNQKA----LEFEPGRTPEVAQALS 178

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   + L   GY   ++A+ L +S HT+  Y+ SA  KL A+N   A+A+A+  G I
Sbjct: 179 PREIDAMTLLAIGYNRAQVADSLSISEHTLRVYIESARFKLGAMNTTHAVARALSRGLI 237


>gi|163738954|ref|ZP_02146367.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis BS107]
 gi|163741802|ref|ZP_02149192.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis 2.10]
 gi|161384975|gb|EDQ09354.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis 2.10]
 gi|161387759|gb|EDQ12115.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis BS107]
          Length = 239

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 15/229 (6%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+  L   +  + +     +   + ++SA D             Y     +        
Sbjct: 18  TSVDGLQEIIQRVCDTFDVDHAMYHWVDSAGDH-------YHFGTYSQGWVERYQEKAYV 70

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +        P+ W+ +   +      +         +   G + P+R    +   
Sbjct: 71  RVDPVIIGCYQRFHPVDWRRLDWSSKPAR--EFLQDALAHDVGNQGYSIPIRGPNGQFAL 128

Query: 132 VIFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLA 185
              +                 +     +      LE    RS    + L+ RE   L L 
Sbjct: 129 FTVSHNCDDDTWTRFTDKHSRDLILIGHYFNRKALEFEPDRSPEHVQPLSPREIDALTLL 188

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             GY+  ++A+ L +S HT+  Y+ SA  KL A+N   AIA+A+  G I
Sbjct: 189 AMGYSRAQVAKTLTISEHTLRVYIESARFKLGAINTTHAIARALSLGLI 237


>gi|12620586|gb|AAG60862.1|AF322012_167 ID375 [Bradyrhizobium japonicum]
          Length = 261

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 11/233 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPNIL 68
           ++ S+  L   L    +       A   ++ + +    + L      N+  D        
Sbjct: 32  QTRSIAALFDLLVNFASNEGFDKVAYGALSCSNERRLPEYLPPPPTINFPSDWCQRYAEQ 91

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +        P +W  +     ++      +R         G++ P+     +
Sbjct: 92  EYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLKHGMSVPLFGSQGR 151

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSC 181
           + +V F S F     +  +           + +    + +            LT RET C
Sbjct: 152 SAFVSFASPFDDADPQDRMAHLTTLASAFHNAVA---QITPPLDESCETDIPLTPRETEC 208

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L    +G ++  I + + ++ +TVN ++ +   KL A NR  A+AKA R G I
Sbjct: 209 LYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 261


>gi|222147695|ref|YP_002548652.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221734683|gb|ACM35646.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 230

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  + +   A+ F +  + SA            + N+  D     ++        
Sbjct: 12  DVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGS--SVITNWPADFLSEYDMASLLSSSP 69

Query: 76  FLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
                 +  +P+++   +        + +L+  L        G  FPV       G V  
Sbjct: 70  MFNRLRNTSIPVVFDVHVVARERDPKTVELATDLFLRFGMPRGACFPVHDAHGNRGAVNI 129

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             E    +   ++        V     E+ +  +     LTERE  CL     G TS EI
Sbjct: 130 CGEMPAFSFVDMVLLQYLAGHVFNRLAEIRELDARVTETLTEREIECLTWTAAGKTSVEI 189

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE +GLS HT+N YL  AT KLD VNR QA+AKA+R   I
Sbjct: 190 AEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229


>gi|260461917|ref|ZP_05810162.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259032164|gb|EEW33430.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 243

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 91/230 (39%), Gaps = 2/230 (0%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             + + +   +  +L  I +          T+        +Q+    L ++ ++  +   
Sbjct: 13  QLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPAGQQKQHVLLCDWPVEWLERYV 72

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  + H      P  W+   ++  I+ S    +   G      G+AFP+    
Sbjct: 73  ARNYVDHDPVVSHMKQLQAPFQWREAAQDIRIDKSSGEVMGDAGAFKLRDGLAFPLITLD 132

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184
            +   V    E + L+              +   ++L     +      LT RE  CLQ 
Sbjct: 133 GQIVMVSLGGEAVELSAAEFGLVSLVSTYAVGRAMQLHTMSGNTIDHVELTPRERECLQW 192

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G +  EI++ LG+S HT   +L +A  KL AVNR+QA+A+AIR GYI
Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|325124101|gb|ADY83624.1| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 238

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 72/210 (34%), Gaps = 9/210 (4%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F              +     L+NY                D  + H    L P++W 
Sbjct: 32  LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYMEQQYVKIDPTVQHCMVSLQPLVWS 91

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           S   +T      +             G A   R      G +        L+ +      
Sbjct: 92  SQFAKTQ---EEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148

Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              +     V +   ++  +   A  NL  T RE   L+   +G TS EIA+ LG++  T
Sbjct: 149 TNMYWLSQTVHSSIAKVVNEVEFAQFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           VN +LG++  KL+  N+I A  +A+  G +
Sbjct: 209 VNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|319785576|ref|YP_004145052.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171464|gb|ADV15002.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 243

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 2/230 (0%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             + +++   +  RL  I +          T+        +Q+    L ++  +  +   
Sbjct: 13  QLQHAATAAAVCERLLGITSDFGLTALMAGTVPQPGTPAGQQKQHVLLCDWPGEWLERYV 72

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  + H      P  W    +   I+ S    +   G      G+AFP+    
Sbjct: 73  ARNYVDHDPVVSHMKQLQAPFQWHEASQGIRIDKSSGEVMGDAGAFKLRDGLAFPLITLD 132

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQL 184
            +   V    E + L+     +        +   ++L    +    +  LT RE  CLQ 
Sbjct: 133 GQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMANRTIDHIVLTPRERECLQW 192

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G +  EI++ LG+S HT   +L +A  KL AVNR+QA+A+AIR GYI
Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|239820479|ref|YP_002947664.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239805332|gb|ACS22398.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 235

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 70/229 (30%), Gaps = 9/229 (3%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +     E S  L  +    +   F           P  +        YD           
Sbjct: 11  RLDEASEPSQVLAQVSVAARQLGFEHCAYGLRTLVPFTRPKTLMFSTYDERWSRRYISAG 70

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  + H      P+IW +       +                 G A  V     + 
Sbjct: 71  YLQVDPTVAHGVHSGTPVIWSNEVFRDAPQ-----MWDEARSFGLRVGWAQSVFEPDARV 125

Query: 130 GYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           G +        L    +    +   G   +    F  L     +    LT+R+   L+  
Sbjct: 126 GMLSLARSSEPLTAAEMRAKDLLFQGLVNKAHRAFCRLLGGPLAGIEPLTKRQVEVLRWT 185

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           GDG TS+EIA  L +S  TV+ +L +A  +L A  +  A A A R G +
Sbjct: 186 GDGKTSDEIAAILCISKPTVDFHLRNAMARLGASTKSSAAAFASRLGLL 234


>gi|240142370|ref|YP_002966880.1| LuxR type transcriptional regulator [Methylobacterium extorquens
           AM1]
 gi|240012314|gb|ACS43539.1| LuxR type transcriptional regulator [Methylobacterium extorquens
           AM1]
          Length = 242

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 1/220 (0%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +     H ++  +    F  + I    +   R   +  +        +        Y D 
Sbjct: 21  DHDQVAHSVERILAEFGFEHFVITGLPNPNDRLDQVLLIRRLPAGWFEHYARHNYMYLDP 80

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
              +  +   P  W     +   E      ++         G + P+            +
Sbjct: 81  VFRNCRATTSPFDWGEAPYDPETEPGAIEVMQRATDFGMARGFSVPIHGPEGCEACFSMS 140

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEI 194
                L        H           ++ ++ +   +  LT+RE   L  A  G +S + 
Sbjct: 141 GRNPDLTGRTKPAVHMIAMYAFERARQVGRRPAKPPSNPLTQREQEVLTWAALGKSSRDT 200

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE + ++  T  A+  +AT KL A NR QA+ +A++  +I
Sbjct: 201 AEIMQITERTALAHAVNATHKLGAANRTQAVVRAMQSKFI 240


>gi|167590019|ref|ZP_02382407.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 233

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 14/234 (5%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             + + S  +   ++      +    F          +P  +  I  L N+        +
Sbjct: 7   DLESTRSEHDAYEKIAAAVREV---GFEYSAYYLHTPWPLSRPKIYMLTNFPEAWQQRYH 63

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  + H      PIIW     E           +         G +       
Sbjct: 64  AARYVDVDPVIRHARQSYAPIIWSDAVFE-----ETPHLWQEAQAHGLRYGYSLAAVSNC 118

Query: 127 HKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSA--ARNLTERETS 180
              G +        L    +    ++                  + S   A  LT RE  
Sbjct: 119 GVAGMMSMARSHGPLTRRELQQQELKMRWLVNAAHLAITRAVLPKLSPDNAIELTAREVE 178

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   DG T+ EI+  + +SV+TVN ++ +A  KL   N   A+A+A   G +
Sbjct: 179 VLKWVADGKTASEISMIMLISVYTVNFHVKNAVTKLKTSNTTAAVARAAMLGLL 232


>gi|238027274|ref|YP_002911505.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237876468|gb|ACR28801.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 237

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 74/230 (32%), Gaps = 14/230 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +SS +E+S  +    N +    +        + +P  +  I  L NY             
Sbjct: 15  ASSEREISILIEGAANHL---GYEFCGYGLRIPWPVSRPKIYLLSNYPEAWKQRYMEAGY 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  + H      P++W         E       R         G +         +G
Sbjct: 72  IDIDPTMKHMRRFQTPVVWTDAFFSRTPE-----LWRDAQAHGLRHGWSQSTFDSCGVSG 126

Query: 131 YVIFTSEFLMLANEVI----IEAHGACYQVITDFLE-LFKKRSSAARN-LTERETSCLQL 184
            +        +    +                     L  K        LT+RE   L+ 
Sbjct: 127 MLTLARSTGPVTPAELERNEFRMRWLVSTTHLAMTRVLMPKLMPDTERGLTDREVEVLKW 186

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A DG TS EI+  L +SV TVN ++ +A  KL  VN+  A+ +A   G +
Sbjct: 187 AADGKTSGEISTILRISVDTVNFHVKNAVAKLKTVNKTSAVVRAAMLGLL 236


>gi|12620899|gb|AAG61129.1|AF330018_1 AHL receptor [Burkholderia cepacia ATCC 25416]
 gi|17939926|emb|CAD19536.1| CepR protein [Burkholderia cepacia]
 gi|288551614|gb|ADC53303.1| transcriptional activator [Burkholderia cepacia]
          Length = 239

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +     Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMAHYQAH 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  + +            +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDVDQIEPC-----PLWQDARDFGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S A    LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|107025997|ref|YP_623508.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692818|ref|YP_838351.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737931|ref|YP_001779191.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895371|gb|ABF78535.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116650818|gb|ABK11458.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169820119|gb|ACA94701.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 239

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +   + Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMAHYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S A    LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|307824873|ref|ZP_07655096.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
 gi|307734231|gb|EFO05085.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
          Length = 236

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 73/238 (30%), Gaps = 13/238 (5%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
                +   S+Q        I +  K   F        +  P         +NY      
Sbjct: 5   QETQLQALQSIQCAHQLFQTILSFSKELGFDHCAYGLRMPLPLTNPKTLMFNNYPTAWQA 64

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
                     D  + H    LLPIIW         +                 G A   R
Sbjct: 65  QYQAKNYLAIDPTVQHAMRSLLPIIWTDDLFSPASD-----LWEEACSFGLRVGWAQSSR 119

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTE 176
                 G +        +  E+ ++A+      +T    L   R    +        L+ 
Sbjct: 120 DFNGFVGMLTLARSNEPIT-EIELDANKFKMAWLTQVAHLGMSRCLTPKLMQEVNVTLSN 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+   DG TS EI+  L ++  TVN ++ +   KL+A N+  A  KA   G +
Sbjct: 179 REIEVLRWTADGKTSSEISCILNIAERTVNFHINNVVTKLNAANKTSATIKAAMLGLL 236


>gi|293611186|ref|ZP_06693484.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826437|gb|EFF84804.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 238

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 9/210 (4%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F              +     L+NY                D  + H    L P++W 
Sbjct: 32  LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYLEQHYVKIDPTVQHCMVSLQPLVWS 91

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           S   ++      +             G A   R      G +        L+ +      
Sbjct: 92  S---QSAKTQEEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSSDQLSEKEQKAQY 148

Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              +     V +   ++  +   A  NL  T RE   L+   +G TS EIA+ LG++  T
Sbjct: 149 TNMYWLSQTVHSSIAKVVNEMEFAQFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           VN +LG++  KL+  N+I A  +A+  G +
Sbjct: 209 VNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|14586756|gb|AAK70350.1|AF333005_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           stabilis]
          Length = 239

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 68/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +     Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMARYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDVDRSDP-----GPLWQDAREFGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S A    LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINILTLQTNWLASLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|27376991|ref|NP_768520.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350133|dbj|BAC47145.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 253

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 5/230 (2%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPNIL 68
           ++ S+  L   L    +       A   ++ + +    + L      N+  D        
Sbjct: 24  QTRSIAALFDLLVNFASNEGFDKVAYGALSCSNERRLPEYLPPPPTINFPSDWCQRYAEQ 83

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +        P +W  +     ++      +R         G++ P+     +
Sbjct: 84  EYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLKHGMSVPLFGSQGR 143

Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           + +V F S F     +  +        A +  +        +       LT RET CL  
Sbjct: 144 SAFVSFASPFDDADPQDRMAHLTTLASAFHNAVAQITPPLDESCETDIPLTPRETECLYW 203

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G ++  I + + ++ +TVN ++ +   KL A NR  A+AKA R G I
Sbjct: 204 VAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 253


>gi|13625780|gb|AAK35156.1|AF296284_2 transcriptional activator BviR [Burkholderia cepacia]
 gi|116878313|gb|ABK32010.1| transcriptional regulator [Burkholderia vietnamiensis]
 gi|116878322|gb|ABK32016.1| transcriptional regulator [Burkholderia vietnamiensis]
          Length = 237

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 16/231 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S  ++          ++A  F   +    +  P  +       NY     +       
Sbjct: 15  AKSEADVFLEFSA---DVRALGFDHCSFGLRIPLPISKPQFMLQSNYPQTWVERYVSQNY 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  + H  S + P+IW++  +   ++          G      G   P        G
Sbjct: 72  FAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEAGQHGLRHGWCMPSVSRTGAIG 126

Query: 131 YVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            +        +    + E               ++  L L +        LT RE   LQ
Sbjct: 127 LITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVPEYTVELTVREREALQ 185

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  G T  EI + + +   TV  +L +A  KL+A N+ +A  KA   G +
Sbjct: 186 WSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236


>gi|218463393|ref|ZP_03503484.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 245

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 80/220 (36%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   L  +    + R F +  +        +      L ++  +   + +         
Sbjct: 27  DIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGS--TVLTSWPAELLALYDQEGLMVDSP 84

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   ++     +    L V L           FP        G V F
Sbjct: 85  VLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPTHEASGLRGAVSF 144

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       V     E+    +     LTERE  CL     G TS EI
Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTEREIDCLNWTAAGKTSAEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 205 AEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|13507195|gb|AAK28504.1| MupR [Pseudomonas fluorescens]
          Length = 234

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 15/230 (6%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +L+  S  L  +       +  L+ +   +  P     I  + NY      I +      
Sbjct: 10  TLEAWSKVLFALAKEYGFSS-VLFGVKPTISTPFSSSTI--ISNYSRSWRSIYDANAYYE 66

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D  +FH  +  LP++W     E  I    Q            +G+  P+     + G +
Sbjct: 67  VDPVVFHCLNSSLPLVWTK---ENFINKPEQQLYEAASASGVCSGLCMPIHGPRGEFGML 123

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFL--------ELFKKRSSAARNLTERETSCLQL 184
            F ++      +VI       + ++ D+L           +K       LT RE  CL+ 
Sbjct: 124 NFITDEKSP-ADVIRSKGLPQFALMRDYLIESFQKIQSAAEKEVEKPPKLTARELECLKW 182

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G TS EI+  L  +  TVN ++ +   K +A +R  A+   IR G +
Sbjct: 183 VAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232


>gi|110678944|ref|YP_681951.1| transcriptional activator protein RaiR, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455060|gb|ABG31265.1| Transcriptional activator protein RaiR, putative [Roseobacter
           denitrificans OCh 114]
          Length = 239

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 15/232 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +++ +L+ ++  +  ++      +   + ++SA +             Y L+        
Sbjct: 15  EQADTLEGINEAIFTLRGHFGVEHMVYHWVDSAGEQ-------YGYGTYSLEWAARYQEQ 67

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +        P+ W+ +   +    + +      G  L   G + P+R    +
Sbjct: 68  NYIRVDPVVIGCYQRFHPVDWKRLDWSSKAARALRAEAATYG--LGNQGYSIPIRGPNGQ 125

Query: 129 NGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCL 182
                  +            E   E     +      LE    ++   ++ L+ RE   +
Sbjct: 126 FALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQKALEFEPNKTPEQSQALSPREIDAM 185

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   GY   ++AE L +S HT+  Y+ SA  KL A N   A+A+A+  G I
Sbjct: 186 TLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAVARALSRGLI 237


>gi|12620907|gb|AAG61133.1|AF330022_1 AHL receptor [Burkholderia vietnamiensis]
          Length = 239

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 13/233 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +     Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAR 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +                        G+A         
Sbjct: 70  NYIEIDSTVREGALSTNMIVWPDVDRIDPC-----PLWEDARDFGLAVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSC 181
            G +  +     L    I              + +++ F+ L K   +A   LT RE   
Sbjct: 125 FGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-LPKLSPAAGVTLTAREREV 183

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L    +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 184 LCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|327188113|gb|EGE55336.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 245

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  +    + R F +  +        +      + ++  +   + +         
Sbjct: 27  DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQG--NTVITSWPAELLALYDQEGLMVNSP 84

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   ++  +  +    L V L           FP        G V F
Sbjct: 85  VLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       V     E+    +     LT+RE  CL     G TS EI
Sbjct: 145 AGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 205 AEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|59940141|gb|AAX12609.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 88/231 (38%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S  + +    LI        +  Y     L    ++  +   +                
Sbjct: 14  NSSADGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTENNML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E  + ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       +      S+    LTERET CL 
Sbjct: 134 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKEVSTGLL 243


>gi|115358865|ref|YP_776003.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|13508495|gb|AAK27306.1| AHL receptor [Burkholderia ambifaria]
 gi|115284153|gb|ABI89669.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 239

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 70/232 (30%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +   + Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGAMSTNMIVWPDVDRIDPC-----PLWQDARDYGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S   +  LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPESSVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +   +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 RWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236


>gi|152985537|ref|YP_001348746.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960695|gb|ABR82720.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 237

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 74/232 (31%), Gaps = 14/232 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            + ++ +E       I        F  ++  +   FP        L NY  +        
Sbjct: 13  SRITTEEEFFSLALEI---CGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISE 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
             T  D  + H     +P+IW     +       +             G + PVR  +  
Sbjct: 70  DYTSIDPIVRHGLLEYMPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGL 124

Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182
                       +A   I+E           +   F +L   R        LT RET  L
Sbjct: 125 ISMFSLVRSAESIAAAEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEML 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    G T  EI   L +   TV  ++ +A  KL++ N+ +A  KA   G +
Sbjct: 185 KWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236


>gi|14586754|gb|AAK70349.1|AF333004_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans ATCC BAA-247]
          Length = 239

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +     Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMAHYQAH 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  + +            +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDVDQIAPC-----PLWQDARDFGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S A    LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|294340032|emb|CAZ88396.1| autoinducer-binding transcriptional regulator LuxR family
           [Thiomonas sp. 3As]
          Length = 237

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 11/221 (4%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
              ++ + + +  F   +    +  P  +  +  L NY     +          D  + H
Sbjct: 21  LFEIVVSMVHSLGFDHCSYGLRMPLPVSRPKVVLLTNYPRAWENRYTEKGYLAVDPTVRH 80

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
               L P++W      +      +             G A   R      G +  +    
Sbjct: 81  GTHSLQPVVWSDAFFAS-----SRDLWEEARSFGLCVGWAQSSRDVNSTMGLLSVSRSGE 135

Query: 140 MLANEVIIE----AHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEE 193
            ++   + +           V      +   +   A    LT+RE   L+   DG T+ E
Sbjct: 136 PISEIELRDKEMQLAWLTQMVHLGMSRILTAKLMPAVTAPLTDREIEVLRWTADGKTASE 195

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA+ L +S  T N ++ +A  KL A N+  A+ +A   G +
Sbjct: 196 IADILNISERTANFHIANAIAKLHAPNKTAAVIRAGMLGML 236


>gi|170745593|ref|YP_001776815.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170752150|ref|YP_001783296.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659247|gb|ACB28299.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659277|gb|ACB28328.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 248

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 87/233 (37%), Gaps = 11/233 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLIC-ELHNYDLDSGDIPNI 67
           +++S+  ++      ++       + ++ I      P      C  +  +  + G     
Sbjct: 19  RRASTDVDVYS---ELRRSGAIFGYDVFLIAGLPRAPHENLYDCSLISGWPPEWGRRYQE 75

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
               + D  + H      P +WQ   +   +   G + +          G   P      
Sbjct: 76  RRHMHVDPVIRHIRGTTDPFLWQEAVDAQ-VTPEGMVVMEEARAFSLNEGFCVPFHQIDG 134

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSC 181
               V F  E + L+ +     H      ++    + ++R       +    LT RE  C
Sbjct: 135 TEAGVSFGGEQVRLSQDERAALHLVAIYAMSTAKAIARRRGLSEDDGTPPSPLTGREAEC 194

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+ +  G ++ EI   L +S  TV  +LGSA  KL++V R QA+A+A+R   I
Sbjct: 195 LKWSSTGKSAWEIGVILSISTRTVEHHLGSAVRKLNSVTRTQAVAEALRRHII 247


>gi|218661906|ref|ZP_03517836.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 245

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 80/220 (36%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   L  +    + R F +  +        +      L ++  +   + +         
Sbjct: 27  DIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGS--TVLTSWPAELLALYDQEGLMVDSP 84

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   ++     +    L V L           FP        G V F
Sbjct: 85  VLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPTHEASGLRGAVSF 144

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       V     E+    +     LT+RE  CL     G TS EI
Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 205 AEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|222106725|ref|YP_002547516.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4]
 gi|221737904|gb|ACM38800.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4]
          Length = 307

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 85/237 (35%), Gaps = 16/237 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSA-LDFPRRQQLICELHNYDLDSGDIPNIL 68
            + S  E+   +      +  + F+ + + +  L+     +    ++NY  +  +     
Sbjct: 54  AAVSAAEMKAVMESSIKSLGYKYFSYHILQTPVLNATNETRHTFGINNYPEEWVERYASE 113

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              Y D  +    S   P  W    +   +    +  +          G+  P+     +
Sbjct: 114 RYVYCDPIVGISLSRKTPFRWSDAIDSDKLTEEERCVIEDAAKRGIVNGLTVPLMSRHGE 173

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAARNLTER 177
              +    +      + + EAH                V+ + L    +R      L+ R
Sbjct: 174 LAIMTVIPDEKF--QDSLPEAHLIHIISQFFHSCALPVVMEEHLIGSYRR--RRSFLSAR 229

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   +     G +S EIA+ LG+S  +V  Y+ S   KL+AVNR QA+ KAI  G I
Sbjct: 230 EKETVIWVSKGKSSWEIAKILGISEKSVEFYMESVKRKLEAVNRTQAVVKAIMLGLI 286


>gi|13474692|ref|NP_106261.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025447|dbj|BAB52047.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 243

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 2/230 (0%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             + + +   +  +L  I +          T+        +Q+    L ++ ++  +   
Sbjct: 13  QLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLLCDWPVEWLERYV 72

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  + H      P  W+   +    + S    +   G      G+AFP+    
Sbjct: 73  ARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKLRDGLAFPLITLD 132

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184
            +   V    E + L+              +   ++L    +       LT RE  CLQ 
Sbjct: 133 GQIVMVSLGGEAMQLSAAEFGLVSLVSTYAVGRAMQLHTMATKTIDHIELTPRERECLQW 192

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G +  EI++ LG+S HT   +L +A  KL AVNR+QA+A+AIR GYI
Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|209548111|ref|YP_002280028.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533867|gb|ACI53802.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 244

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   L  +    ++R F +  +        +      + ++  +   + +         
Sbjct: 26  DIFRFLKRVTEAYRSRAFLVLNLPPITSLDIQGS--TVITSWPAELLALYDQEGLLVNSP 83

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   +E  +  +    L   L        G  FP        G + F
Sbjct: 84  VLRRLRTSARPFFYDMSRENWSRDDGKSILVASLFERFRMMRGAYFPTHEPSGVRGAISF 143

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       V     E+    +     LT+RE  CL     G TS EI
Sbjct: 144 AGDREPFSPAEMRELCYISIHVYDRLAEIRNLDTRITDTLTDREIDCLNWTAAGKTSAEI 203

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 204 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243


>gi|66277254|gb|AAY44558.1| LuxR-like protein [Aeromonas caviae]
          Length = 260

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 9/211 (4%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            +  Y     L    ++  +   +           +      D  +       LPI W  
Sbjct: 34  GYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTLNNMLACDPIIQLARRQTLPIYWNR 93

Query: 92  IQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           + E    ++      + L        GI+FP+     +NG + F +     ++++++E  
Sbjct: 94  LDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT-RERASSDLMLESS 152

Query: 149 --AHGACYQVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                    +    + + +   +       LTERET CL  A +G TS EIA  LG++  
Sbjct: 153 PILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERETECLFWASEGKTSGEIACILGITER 212

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|190890568|ref|YP_001977110.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695847|gb|ACE89932.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 246

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  +    + R F +  +        +      + ++  +   + +         
Sbjct: 28  DIFRFMKRMTEAYRCRAFMVLNLPPITSLDLQG--NTVITSWPAELLALYDQEGLMVNSP 85

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   ++  +  +    L V L           FP        G V F
Sbjct: 86  ILRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 145

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       V     E+    +     LT+RE  CL     G TS EI
Sbjct: 146 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 205

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 206 AEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 245


>gi|262281348|ref|ZP_06059129.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257174|gb|EEY75911.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus
           RUH2202]
          Length = 238

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F              +     L+NY                D  + H    L P++W 
Sbjct: 32  LGFDYCAYGMQAPLSIAEPKTIMLNNYPEAWQKRYVKQQYVVVDPTVQHCMLSLQPLVWS 91

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           S   ++    S +             G A   R      G +        L+ +      
Sbjct: 92  S---QSANTQSQKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSTDQLSEKEQKAQY 148

Query: 149 --AHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              +     V +   ++      A  NL  T RE   L+   +G TS EIA+ LG++  T
Sbjct: 149 TNMYWLSQTVHSSIAKIVNDAEFAQFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERT 208

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           VN +L ++  KL+  N+I A  +A+  G +
Sbjct: 209 VNFHLCNSMQKLNVNNKISAAIRAVMLGIL 238


>gi|330820206|ref|YP_004349068.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli
           BSR3]
 gi|327372201|gb|AEA63556.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli
           BSR3]
          Length = 240

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 73/231 (31%), Gaps = 14/231 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
            +++ Q+L  ++     R+    F        +  P  Q ++     Y            
Sbjct: 15  AAANEQQLFQQISAYSKRL---GFEYCCYGIRVPQPGTQPVVEIFDTYPAGWMAHYQARN 71

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +         IIW  +              R         G+A          
Sbjct: 72  YIEVDPTVRDGAMSPNMIIWPDVDTAEDPS-----LWRDARDFGMSVGVAQSAWAARGVF 126

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQ 183
           G +        L    I         +      L  K        +A+  LT+RE   L 
Sbjct: 127 GLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGKFLVPKLSPAASVTLTKREREVLS 186

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G T+ EI E+L +S  TV  ++ +   KL A N++QA+ KAI  G I
Sbjct: 187 WTSEGRTASEIGEQLNISERTVTFHINNILAKLGATNKVQAVVKAIGMGLI 237


>gi|218508993|ref|ZP_03506871.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Brasil 5]
          Length = 245

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  +    + R F +  +        +      + ++  +   + +         
Sbjct: 27  DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQG--NTVITSWPAELLALYDQEGLMVNSP 84

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   ++  +  +    L V L           FP        G V F
Sbjct: 85  VLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       V     E+    +     LT+RE  CL     G TS EI
Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 205 AEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|116878316|gb|ABK32012.1| transcriptional regulator [Burkholderia vietnamiensis]
 gi|116878319|gb|ABK32014.1| transcriptional regulator [Burkholderia vietnamiensis]
          Length = 237

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 16/231 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S  ++          ++A  F   +    +  P  +       NY     +       
Sbjct: 15  AKSEADVFLEFSA---DVRALGFDHCSFGLRIPLPISKPQFMLQSNYPQTWVERYVSQNY 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  + H  S + P+IW++  +   ++                 G   P        G
Sbjct: 72  FAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEADQHGLRHGWCMPSVSRTGAIG 126

Query: 131 YVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            +        +    + E               ++  L L +        LT RE   LQ
Sbjct: 127 LITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVPEYTVELTVREREALQ 185

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  G T  EI + + +   TV  +L +A  KL+A N+ +A  KA   G +
Sbjct: 186 WSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236


>gi|171322367|ref|ZP_02911189.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171092309|gb|EDT37680.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 239

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +   + Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S   +  LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIAAGLI 236


>gi|12620903|gb|AAG61131.1|AF330020_1 AHL receptor [Burkholderia cepacia]
          Length = 239

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +   + Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMAHYQAR 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S A    LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|218673534|ref|ZP_03523203.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 245

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  +    + R F +  +        +      + ++  +   + +         
Sbjct: 27  DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGS--TVITSWPAELLALYDQEGLMVNSP 84

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   ++     +    L V L           FP        G V F
Sbjct: 85  VLRRLRTSARPFFYDMSRQNWPRDDGKSALVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       V     E+    +     LT+RE  CL     G TS EI
Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRITDALTDREIDCLNWTAAGKTSAEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 205 AEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|7385149|gb|AAF61719.1|AF232769_1 acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas fluorescens]
          Length = 241

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 72/230 (31%), Gaps = 10/230 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +   LQE +    L++  ++   F  Y        P  +       +Y     +      
Sbjct: 17  EMLKLQESAQVFALLEREVQYLGFDFYAYGIRHSIPFTRPKTEIYGSYPQPWMERYQQQN 76

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  + +       ++W  +         G +            G   P+R      
Sbjct: 77  YAAIDPSILNGLRSTEMVVWNDVLF-----GKGSVLWGEAQDWGLRVGATVPIRTPDGAL 131

Query: 130 GYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQL 184
             +        ++        +              EL    + S  + L+ RE   LQ 
Sbjct: 132 SVLSVARRNTAISAVEREVIRLRLRCIIELAAGRLSELGHSNTQSDPQELSAREREILQW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG +S EIA  LG+SV+TVN +L     K  A N+  A A A   G I
Sbjct: 192 TADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLGLI 241


>gi|194468906|ref|ZP_03074890.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455270|gb|EDX44109.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
          Length = 240

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 77/235 (32%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++ F+   L  ++    EV +       + ++    L      +     ++RE 
Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|49081930|gb|AAT50365.1| PA1898 [synthetic construct]
          Length = 238

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 75/232 (32%), Gaps = 14/232 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            + ++ +E    +  I        F  ++  +   FP        L NY  +        
Sbjct: 13  SRITTEEEFFSLVLEI---CGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISE 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
             T  D  + H      P+IW     +       +             G + PVR  +  
Sbjct: 70  DYTSIDPIVRHGLLEYTPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGL 124

Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182
              +        +A   I+E           +   F +L   R        LT RET  L
Sbjct: 125 ISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEML 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    G T  EI   L +   TV  ++ +A  KL++ N+ +A  KA   G +
Sbjct: 185 KWTAVGKTYGEIGLILSIDQRTVKFHIVNAVRKLNSSNKAEATMKAYAIGLL 236


>gi|205352355|ref|YP_002226156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272136|emb|CAR36989.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627405|gb|EGE33748.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 240

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EEQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++ F+   L  ++    EV +       + ++           +     ++RE 
Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|254254249|ref|ZP_04947566.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa
           AUO158]
 gi|12620909|gb|AAG61134.1|AF330023_1 AHL receptor [Burkholderia cepacia]
 gi|124898894|gb|EAY70737.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa
           AUO158]
          Length = 239

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 67/229 (29%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           S+ ++       I    K   F        +  P  +  +     Y              
Sbjct: 13  SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAKNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +         I+W  +       +      R         G+A          G 
Sbjct: 73  DIDSTVRDGALSTNMIVWPDVD-----GADSSPLWRDAREFGLSVGVAQSSWAARGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185
           +        L    I       +       +        + S   +  LT RE   L   
Sbjct: 128 LSIARRADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEASVTLTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 AEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|116250693|ref|YP_766531.1| LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255341|emb|CAK06416.1| putative LuxR/GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 245

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  +    ++R F +  +     F  +      + ++  +   + +         
Sbjct: 27  DIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGS--TVITSWPAELLALYDQEGLMVNSP 84

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   ++  +  +    L   L           FP        G V F
Sbjct: 85  VLRRLRTSARPFFYDMSRQNWSRDDGKSILVASLFERFKMMRCAYFPTHEPSGLRGAVSF 144

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    ++  + E       V     E+    +     LT+RE  CL     G TS EI
Sbjct: 145 AGDREPFSSAEMRELCYIAIHVFDRLAEIRNLDTRMTDTLTDREIDCLNWTAAGKTSAEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 205 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|66277256|gb|AAY44559.1| LuxR-like protein [Aeromonas caviae]
          Length = 260

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 9/211 (4%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            +  Y     L    ++  +   +           +      D  +       LPI W  
Sbjct: 34  GYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTLNNMLACDPIIQLARRQTLPIYWNR 93

Query: 92  IQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           + E    ++      + L        GI+FP+     +NG + F +     ++++++E  
Sbjct: 94  LDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT-RERASSDLMLESS 152

Query: 149 --AHGACYQVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                    +    + + +   +       LTERET CL  A +G TS EIA  LG++  
Sbjct: 153 PILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERETECLFWASEGKTSGEIACILGITER 212

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|241203295|ref|YP_002974391.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857185|gb|ACS54852.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 244

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  +    ++R F +  +     F  +      + ++  +   + +         
Sbjct: 26  DIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGS--TVITSWPAELLALYDQEGLMVNSP 83

Query: 76  FLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   ++  +  +    L   L           FP        G + F
Sbjct: 84  VLRRLRTSARPFFYDMSRQNLSRDDGKSILVASLFERFKMMRCAYFPTHEPSGLRGAISF 143

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       +     E+    +     LT+RE  CL     G TS EI
Sbjct: 144 AGDREPFSPAEMRELCYISIHIFDRLAEIRNLDTRMTDTLTDREIDCLNWTAAGKTSAEI 203

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 204 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243


>gi|16760896|ref|NP_456513.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141412|ref|NP_804754.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213053513|ref|ZP_03346391.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213426356|ref|ZP_03359106.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213616131|ref|ZP_03371957.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650336|ref|ZP_03380389.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289824072|ref|ZP_06543670.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25302436|pir||AH0749 cell-division regulatory protein STY2158 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503193|emb|CAD05699.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137039|gb|AAO68603.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 240

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 77/235 (32%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++ F+   L  ++    EV +       + ++    L      +     ++RE 
Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|83859373|ref|ZP_00952894.1| Transcriptional regulatory protein, LuxR family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83852820|gb|EAP90673.1| Transcriptional regulatory protein, LuxR family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 241

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 79/226 (34%), Gaps = 3/226 (1%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           S S + L               F    + S  D         E + +     D+      
Sbjct: 15  SDSNEALCHAFKAFVETFGVEAFGYQVLPSPFDAADT-SFDFEYNTFPEAMQDVYFEERL 73

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D       + L P  W  +++ T      Q    L        G   PV   +    
Sbjct: 74  YDHDPVTSRAATALQPQFWFDVEQTTPGTRFSQRLFELLRQSGFVDGFTIPVFGPYGLAA 133

Query: 131 YVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +V          L    +      C ++ +  + L    + A  +L+ERE   LQ    G
Sbjct: 134 FVACGRFSGAFNLTAIQLRMLQLGCQELYSRTIMLRDYDAPAPPHLSEREVEILQWLARG 193

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  IA  LG+S HTV+  +  A VKL+A NRI A+ KA+R G I
Sbjct: 194 KSNAVIAAILGVSPHTVDTIMRRAFVKLNASNRIAAVLKALRVGLI 239


>gi|166850622|gb|ABY91283.1| transcriptional regulator [Mesorhizobium huakuii]
          Length = 243

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 2/230 (0%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             + + +   +  +L  I +          T+        +Q+    L ++ ++  +   
Sbjct: 13  QLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSGQQKQHVLLCDWPVEWLERYV 72

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  + H      P  W+   +    + S    +   G      G+AFP+    
Sbjct: 73  ARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSDEVMGDAGAFKLRDGLAFPLITLD 132

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184
            +   V    E + L+              +   +++    +S      LT RE  CLQ 
Sbjct: 133 GQIVMVSLGGEAVQLSGAEFGLVSLVSTYAVGRAMQIHTMATSTIDHIELTPRERECLQW 192

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G +  EI++ LG+S HT   +L +A  KL AVNR+QA+A+AIR GYI
Sbjct: 193 AAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|14627170|gb|AAK50054.2|AF364058_1 transcriptional activator [Burkholderia multivorans ATCC 17616]
          Length = 239

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           S+ ++       I    K   F        +  P  +  +     Y              
Sbjct: 13  SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +         I+W  + +            R         G+A          G 
Sbjct: 73  EIDSTVRDGALSTNMIVWPDVDKIEPC-----PLWRDARDFGLSVGVAQSSWAARGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185
           +        L    I       +       +        + S      LT RE   L   
Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPETRVALTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 AEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|59940117|gb|AAX12597.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 9/211 (4%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            +  Y     L    ++  +   +           +      D  +    +  LPI W  
Sbjct: 34  GYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTVNNMLACDPIIQLARTQTLPIYWNR 93

Query: 92  IQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           + E    ++      + L        GI+FP+     +NG + F +     ++++++E  
Sbjct: 94  LDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGATGENGILSFIT-RERASSDLLLESS 152

Query: 149 --AHGACYQVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                    +    + + +   +       LT+RET CL  A +G TS EIA  LG++  
Sbjct: 153 PILSWMSNYIFEAAIRIVRQSMREEDPQEALTDRETECLFWASEGKTSGEIACILGITER 212

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|221196069|ref|ZP_03569116.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2M]
 gi|221202743|ref|ZP_03575762.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2]
 gi|221176677|gb|EEE09105.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2]
 gi|221182623|gb|EEE15023.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2M]
          Length = 239

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           S+ ++       I    K   F        +  P  +  +     Y              
Sbjct: 13  SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +         I+W  + +            R         G+A          G 
Sbjct: 73  EIDSTVRDGTLSTNMIVWPDVDKIEPC-----PLWRDARDFGLSVGVAQSSWAARGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185
           +        L    I       +       +        + S      LT RE   L   
Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTLTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 AEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236


>gi|161613489|ref|YP_001587454.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168244797|ref|ZP_02669729.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168462512|ref|ZP_02696443.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822990|ref|ZP_02834990.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194445102|ref|YP_002041215.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448751|ref|YP_002046001.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197250905|ref|YP_002146073.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|204931037|ref|ZP_03221863.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|207856536|ref|YP_002243187.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238912477|ref|ZP_04656314.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|161362853|gb|ABX66621.1| hypothetical protein SPAB_01206 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403765|gb|ACF63987.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407055|gb|ACF67274.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195634505|gb|EDX52857.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197214608|gb|ACH52005.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|204320081|gb|EDZ05286.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205336361|gb|EDZ23125.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340659|gb|EDZ27423.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206708339|emb|CAR32642.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|320085432|emb|CBY95213.1| Regulatory protein sdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 240

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++ F+   L  ++    EV +       + ++           +     ++RE 
Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|261340314|ref|ZP_05968172.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316]
 gi|288317405|gb|EFC56343.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316]
          Length = 240

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ +   E+      +Q + +A  F  +++      P  +  I    +Y       
Sbjct: 14  FLRFQELTCADEVY---QELQQQTQALEFDYFSLCVRHPVPFTRPKISVHSSYPDRWMAQ 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L          I   +     + +  Q             GI   + L
Sbjct: 71  YKSENYFAVDPVLK-----PENFIQGHLPWTDELFADAQELWGGAQDHGIRKGITQCLML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELF-KKRSSAARNLTERET 179
             H  G++  +   L        E+ +         +T  L    +         ++RE 
Sbjct: 126 PNHALGFLSVSRTSLRENAIHHEEIELRLQMLVQMALTSLLRFEHETVMPPEMKFSKRER 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|59940111|gb|AAX12594.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI   +    +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRSLPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|296101736|ref|YP_003611882.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056195|gb|ADF60933.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 240

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 74/235 (31%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  +  +S  E+      +Q + +A  F  Y +      P  +  I     Y       
Sbjct: 14  FLRFQALTSASEVY---QELQRQTQALEFDYYALCLRHPVPFTRPRISVHATYPQRWMAQ 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L          I   +     + +  +             GI   + L
Sbjct: 71  YQSENYFAIDPVLK-----PENFIQGHLPWTDELFADAEALWNGARDHGLRKGITQCLML 125

Query: 125 GFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
             H  G++  +        + + E+ +         +T  L    +         ++RE 
Sbjct: 126 PNHALGFLSVSCTSVQAGAVTSEELELRLQMLLQMALTSLLRFEDEMVMPPEMKFSKRER 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|161520519|ref|YP_001583946.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353291|ref|YP_001948918.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221209754|ref|ZP_03582735.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           multivorans CGD1]
 gi|160344569|gb|ABX17654.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337313|dbj|BAG46382.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170442|gb|EEE02908.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           multivorans CGD1]
          Length = 239

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           S+ ++       I    K   F        +  P  +  +     Y              
Sbjct: 13  SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +         I+W  + +            R         G+A          G 
Sbjct: 73  EIDSTVRDGALSTNMIVWPDVDKIEPC-----PLWRDARDFGLSVGVAQSSWAARGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185
           +        L    I       +       +        + S      LT RE   L   
Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVALTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 AEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|59940043|gb|AAX12560.1| LuxR-type transcriptional regulator [Aeromonas sobria]
          Length = 258

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 11/243 (4%)

Query: 1   MSENTL--TGKKSSSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNY 57
           M ++ L    +  +++ +   RL  +  R      +  Y     +    ++  +   +  
Sbjct: 1   MKQDELFEYLEHLTTVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQC 59

Query: 58  DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFA 116
            +              D  +       LPI W  + E  + ++      + L        
Sbjct: 60  PVSWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRN 119

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAA 171
           GI+FP+     + G + F +     ++++++E           +    + +   + S   
Sbjct: 120 GISFPLHGAAGETGILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQH 178

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RET CL  A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK I  
Sbjct: 179 AALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISS 238

Query: 232 GYI 234
           G +
Sbjct: 239 GIL 241


>gi|172063602|ref|YP_001811253.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996119|gb|ACB67037.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 239

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +   + Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDVDRIDPC-----PLWQDARDYGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S   +  LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236


>gi|59940089|gb|AAX12583.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEATIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|167572684|ref|ZP_02365558.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 239

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 73/238 (30%), Gaps = 14/238 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L    + + Q+L  ++     R+    F        +  P  +  +     Y     
Sbjct: 7   DAYLQFSAAENEQQLFRQIAAYSKRL---GFEYCCYGIRVPLPISKPAVAIFDTYPNGWM 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +    +     D  +         I+W                           G+A   
Sbjct: 64  ERYQEMNYLEVDPTVRDGALSTNMIVWPEASRSDGTT-----LWNDARDHGLAVGVAQSS 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTE 176
                  G +        L +  I +       +      L  +         +   LT 
Sbjct: 119 WAPRGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L   G+G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|56413135|ref|YP_150210.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362061|ref|YP_002141698.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56127392|gb|AAV76898.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093538|emb|CAR59000.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 240

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++ F+   L  ++    EV +       + ++           +     ++RE 
Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|121663600|emb|CAM12358.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae]
          Length = 239

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 70/229 (30%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++ +      H +    K   F        +  P  Q L+     Y              
Sbjct: 13  NTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +    +    IIW                 R         G+A          G 
Sbjct: 73  EIDPTVRDGAASPNMIIWPDADAAEQPS-----LWRDARDFGMSVGVAQSSWAARGVFGL 127

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185
           +        L    I         +      L  +        +A+ +LT+RE   L   
Sbjct: 128 LTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKREREVLSWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI E+L +S  TV  ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 SEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236


>gi|16765288|ref|NP_460903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167993519|ref|ZP_02574613.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|2992525|gb|AAC08299.1| SdiA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420484|gb|AAL20862.1| transcriptional regulator of ftsQAZ gene cluster [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|205328435|gb|EDZ15199.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247116|emb|CBG24939.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993936|gb|ACY88821.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158464|emb|CBW17974.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912940|dbj|BAJ36914.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224593|gb|EFX49656.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional
           activator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323130228|gb|ADX17658.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988839|gb|AEF07822.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 240

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          +             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAKAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++ F+   L  ++    EV +       + ++           +     ++RE 
Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|260551305|ref|ZP_05825506.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624]
 gi|260405619|gb|EEW99110.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624]
          Length = 238

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 74/227 (32%), Gaps = 14/227 (6%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            EL   +    +++    F              +     L+NY                D
Sbjct: 19  DELFEVVKSTASKL---GFDYCAYGMQSPLSIAEPKTIMLNNYPQAWQKRYIEQRYVKVD 75

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             + H    L P++W S   +       +             G A   R      G +  
Sbjct: 76  PTVQHCMVSLQPLVWSS---QNAKTQEEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTL 132

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGD 187
                 L+ E   +A       +T  L     +             LT RE   L+   +
Sbjct: 133 ARSTDQLS-EKEQKAQYTNMYWLTQTLHSSIAKIVNDVEFSQFNLYLTNREKEALRWTAE 191

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G TS EIA+ +G++  TVN +L ++  KL+  N+I A  +A+  G +
Sbjct: 192 GKTSAEIAQIIGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|170700319|ref|ZP_02891331.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134753|gb|EDT03069.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 239

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +   + Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  I              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDIDRIDPC-----PLWQDARDYGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S   +  LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236


>gi|126740492|ref|ZP_01756179.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           SK209-2-6]
 gi|126718293|gb|EBA15008.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           SK209-2-6]
          Length = 239

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 17/229 (7%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           SL  L   +  +       +   + ++SA D             Y               
Sbjct: 19  SLDGLQSIIEEVCQAFGVDDAMYHWVDSAGDQ-------YGCGTYKQAWIQRYLDKGYVR 71

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGY 131
            D  +        P+ W+ +          +              G + P+R    +   
Sbjct: 72  SDPVIAGCYQRFHPVDWRRLDW---TTRQAKEFRSDAQNYGVGNQGYSVPIRGPNGQFAL 128

Query: 132 VIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLA 185
              +        +  I+          +      LE   KR       L+ RE   L L 
Sbjct: 129 FTVSHSCNDANWDEFIDTFSQELILVGHYFNRKALEFEPKRKPEHTPPLSPREMDALTLL 188

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             GY   ++A+ L +S HT+  Y+ SA  KL A+N   AIA+AI  G I
Sbjct: 189 AIGYNRAQVAKTLSISEHTLRVYIESARFKLGALNTTHAIARAISCGLI 237


>gi|59940033|gb|AAX12555.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 11/244 (4%)

Query: 1   MSENTLT--GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58
           M ++ L    +  +++ +      LI        +  Y     +    ++  +   +   
Sbjct: 1   MKQDQLLEYLEHLTTVTDEDRLAELISRFTLGMGYDYYRFAVIIPMSMQRPKVVLFNQCP 60

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAG 117
                          D  +       LPI W  + E    ++      + L        G
Sbjct: 61  DSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNG 120

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSA 170
           I+FP+     +NG + F +     ++++++E           +       + +  +    
Sbjct: 121 ISFPLHGAAGENGILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDP 179

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+RET CL  A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK + 
Sbjct: 180 QEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVS 239

Query: 231 FGYI 234
            G +
Sbjct: 240 SGIL 243


>gi|78061902|ref|YP_371810.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969787|gb|ABB11166.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 239

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +   + Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMAHYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDVDRIEPC-----PLWQDARDYGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + + A    LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLAPAAGVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|206563716|ref|YP_002234479.1| N-acylhomoserine lactone dependent regulatory protein CepR
           [Burkholderia cenocepacia J2315]
 gi|198039756|emb|CAR55726.1| N-acylhomoserine lactone dependent regulatory protein CepR
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 68/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +     Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALNTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S A    LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|168239186|ref|ZP_02664244.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735895|ref|YP_002114983.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|198243442|ref|YP_002215136.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|194711397|gb|ACF90618.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288026|gb|EDY27413.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937958|gb|ACH75291.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|322616943|gb|EFY13851.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618183|gb|EFY15075.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625853|gb|EFY22672.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626305|gb|EFY23115.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632720|gb|EFY29465.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322639062|gb|EFY35755.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640503|gb|EFY37156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322645988|gb|EFY42505.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649891|gb|EFY46312.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655499|gb|EFY51807.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660277|gb|EFY56515.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662958|gb|EFY59165.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668143|gb|EFY64302.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674097|gb|EFY70191.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675550|gb|EFY71624.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322683038|gb|EFY79054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686732|gb|EFY82710.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323195379|gb|EFZ80559.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199270|gb|EFZ84365.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204435|gb|EFZ89441.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207525|gb|EFZ92473.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211850|gb|EFZ96681.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217510|gb|EGA02229.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219586|gb|EGA04070.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323223588|gb|EGA07903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231532|gb|EGA15645.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235975|gb|EGA20054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240545|gb|EGA24588.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245437|gb|EGA29437.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323250207|gb|EGA34099.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253982|gb|EGA37806.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255491|gb|EGA39252.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262088|gb|EGA45651.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266211|gb|EGA49701.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270680|gb|EGA54121.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622885|gb|EGE29230.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 240

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDMLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++ F+   L  ++    EV +       + ++           +     ++RE 
Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|59940119|gb|AAX12598.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 258

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%)

Query: 12  SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +S+ +   RL  +  R      +  Y     +    ++  +   +   +           
Sbjct: 14  TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
              D  +       LPI W  + E    ++      + L        GI+FP+     +N
Sbjct: 73  LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132

Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184
           G + F +     ++++++E           +    + +   + S     LT+RET CL  
Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK I  G +
Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940109|gb|AAX12593.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-46]
          Length = 260

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66736599|gb|AAY54303.1| quorum sensing trancriptional regulator [Aeromonas veronii]
          Length = 258

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%)

Query: 12  SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +S+ +   RL  +  R      +  Y     +    ++  +   +   +           
Sbjct: 14  TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
              D  +       LPI W  + E    ++      + L        GI+FP+     +N
Sbjct: 73  LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132

Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184
           G + F +     ++++++E           +    + +   + S     LT+RET CL  
Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK I  G +
Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|12620905|gb|AAG61132.1|AF330021_1 AHL receptor [Burkholderia stabilis]
          Length = 239

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 68/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +     Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMARYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALSTNMIVWPDVDRSDP-----GPLWQDAREFGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S A    LT RE   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISGRTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|255264823|ref|ZP_05344165.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium
           sp. R2A62]
 gi|255107158|gb|EET49832.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium
           sp. R2A62]
          Length = 258

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 17/233 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++++SL  L   +  +++  K  +   + ++S  +             YD          
Sbjct: 13  EQATSLNHLQDSISDLRDLYKIDHIVYHWVSSDGEQ-------YGCGTYDRSWVQRYVEQ 65

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +        P+ W+ +   +    +           +   G + P+R    +
Sbjct: 66  DYLRIDPVVVGCFQRFHPVDWKRLDWSSKAART--FQAEAIEAGVGIQGYSIPIRGPNGQ 123

Query: 129 NGYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSC 181
                  S                 +     +      LE  K R   AA+ L+ RE   
Sbjct: 124 FALFS-ASHNCDDDWWANWTEANRRDLILIAHTFNQKGLEFEKNRVPEAAKGLSPREVDA 182

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +     GY+  ++A  L +S HT+ AY+ SA  KL A+N   A+A+A+  G I
Sbjct: 183 MTFLAMGYSRAQVANTLSISEHTLRAYIESARFKLGALNTTHAVARAMAHGLI 235


>gi|220920328|ref|YP_002495629.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219944934|gb|ACL55326.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 246

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 74/225 (32%), Gaps = 5/225 (2%)

Query: 11  SSSLQELSPRLHLIQN---RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
             +L E+             I+   F  +TI        R       + +  D     + 
Sbjct: 16  IDALDEVRDPFEAQTRIFEHIQHVGFTSFTITRLPRPSDRLGPNMLFNMWPKDWLTHYDR 75

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +     D  +        P  W  +  +       +  +          G   PV     
Sbjct: 76  VGHYRFDPVVRQCYRTTEPFAWSEVPFDADQPDRARRVMDEAAAFGLGFGFCIPVHDALG 135

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLA 185
             G V    E + L+ ++    H                ++RS   R L+ RE   L  A
Sbjct: 136 FQGGVSLAGERIDLSPKIRRGLHMLGLYAWGAATRTTEDRRRSEPGRLLSARERDVLSWA 195

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             G T EEIA  LG+S  TV  +L SA +K+ A N  Q + +A+R
Sbjct: 196 AMGRTREEIATILGVSHETVATHLKSARIKIGARNTTQTVVEALR 240


>gi|15889561|ref|NP_355242.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157444|gb|AAK88027.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 238

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 2/227 (0%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +  S+  + S  L  +Q  + A  +A  T+           L   + +            
Sbjct: 12  RDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESSLPVWVVNAMTK 71

Query: 69  IETYGD-DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
               GD   +    S ++P  W     E    S       + G +   +G+  PV     
Sbjct: 72  DGALGDCPVIKRGASSMMPQYWSLEDPEMACGSLVDAVNSV-GSMGITSGLMVPVNGMSG 130

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               + F  +   L    + E        +  +  L +  S     LT+RE   ++    
Sbjct: 131 NRHLMNFAGDRDTLPQASLNELCMIALHALETYDRLCRVASKGPSPLTKRELDVVRWTAQ 190

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G TS EIAE L +S HTVN Y+ +A  KLD VNR Q +AK IR   I
Sbjct: 191 GKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLI 237


>gi|238024809|ref|YP_002909041.1| AHL receptor [Burkholderia glumae BGR1]
 gi|55509000|gb|AAV52804.1| AHL receptor [Burkholderia glumae BGR1]
 gi|237879474|gb|ACR31806.1| AHL receptor [Burkholderia glumae BGR1]
          Length = 239

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 70/229 (30%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++ +      H +    K   F        +  P  Q L+     Y              
Sbjct: 13  NTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +    +    IIW                 R         G+A          G 
Sbjct: 73  EIDPTVRDGAASPNMIIWPDADAAEQPS-----LWRDARDFGMSVGVAQSSWAARGVFGL 127

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185
           +        L    I         +      L  +        +A+ +LT+RE   L   
Sbjct: 128 LTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKREREVLSWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI E+L +S  TV  ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 SEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236


>gi|75674825|ref|YP_317246.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419695|gb|ABA03894.1| Transcriptional regulatory protein, LuxR family [Nitrobacter
           winogradskyi Nb-255]
          Length = 241

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 2/225 (0%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           K+S+  E++  +  +   +   +     I        +Q     LH +     +      
Sbjct: 18  KASTPAEIADAVVDVARPLGFSHVLAGIIPIPGMTAEQQISNVVLHRWPKAWSERYFTKG 77

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
             + D  +   N+   P +W  ++       +    +          G   P+     + 
Sbjct: 78  YLFDDPTIQRVNTSTEPFLWSELEPTYRNTPAPTRVMGEAREFNLGCGFTVPMITLNGQT 137

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                 SE   + + +  +              L +K   A  NLT RE   LQ   +G 
Sbjct: 138 AGFSLASERAEVPSILRGQLQLIAMYAFAR--ALGQKYKPAPVNLTPREMDILQWMAEGK 195

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  EI+  L +S H V+        KL+A NR Q +A A+R   I
Sbjct: 196 SDWEISVILKVSEHLVDKIARQLRAKLNATNRTQTVAVALRHNLI 240


>gi|218681045|ref|ZP_03528942.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 244

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 82/220 (37%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   L  +    ++R F +  +        +      + ++  +   + +         
Sbjct: 26  DIFRFLKRVTEAYRSRAFMVLNLPPITSLDIQGS--TVITSWPAELLALYDQEGLLVNSP 83

Query: 76  FLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +  S    +  +    L   L        G  FP        G V F
Sbjct: 84  VLRRLRTSARPFSYDMSRDNWSRDDGKSVLVTALFERFRMMRGAYFPTHEPSGLRGAVSF 143

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           + +    +   + E       V     E+    +     LT+RE  CL     G TS EI
Sbjct: 144 SGDRETFSPAEMRELCYIAVHVYDRLAEIRNLDARITDTLTDREIDCLNWTAAGKTSAEI 203

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 204 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243


>gi|59940065|gb|AAX12571.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 258

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%)

Query: 12  SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +S+ +   RL  +  R      +  Y     +    ++  +   +   +           
Sbjct: 14  TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
              D  +       LPI W  + E    ++      + L        GI+FP+     +N
Sbjct: 73  LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132

Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184
           G + F +     ++++++E           +    + +   + S     LT+RET CL  
Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK I  G +
Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|66277284|gb|AAY44573.1| LuxR-like protein [Aeromonas veronii bv. sobria]
          Length = 258

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%)

Query: 12  SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +S+ +   RL  +  R      +  Y     +    ++  +   +   +           
Sbjct: 14  TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
              D  +       LPI W  + E    ++      + L        GI+FP+     +N
Sbjct: 73  LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132

Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184
           G + F +     ++++++E           +    + +   + S     LT+RET CL  
Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK I  G +
Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|134291839|ref|YP_001115608.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135028|gb|ABO59353.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 239

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 15/234 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           + +++ +  +       +   ++A  F  +     +  P  +    E +N+         
Sbjct: 11  SMEQAETASDAFD---GLAPAVRALGFEYHAYVLRVTIPITRPASMEWNNFPQAWRAHYA 67

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                + D  L +  +   P+ W          +      R         G +  +R   
Sbjct: 68  QKRYQHADPVLHYGQACTRPMPW------PGPLAGHDAFWRDAADFGLRHGWSQTLRDHR 121

Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDF--LELFKKRSSAARNLTERETS 180
              G          ++ E +     E    C  V      L +     S A  L+ RE  
Sbjct: 122 GAMGTFSLVRGGPPISPEELRRTEPEMIWLCQFVHATMSNLIVSDVMPSGAMRLSLREKE 181

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L    +G T+ E+A  L L+   V  ++ +A  KLDA N+  A  KA   G I
Sbjct: 182 VLHWTAEGKTAAEVAAILQLTERNVGFHIQNAMDKLDATNKTHATVKAAMLGLI 235


>gi|126725039|ref|ZP_01740882.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2150]
 gi|126706203|gb|EBA05293.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2150]
          Length = 226

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 27/238 (11%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +++ +L +L   +  I++     +   +++ S  +          +  Y  +        
Sbjct: 2   QQAKTLDDLQNVILGIRDLYDVEHLVYHSVKSTGEQ-------YGVLTYTDEWTQHYVEQ 54

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESS------------GQLSVRLEGGLLPFA 116
                D  +        P+ W+ +   +                   LSV + G    FA
Sbjct: 55  NYERIDPVVLGCFQSFQPVTWKELDWSSKGSRRFLGEALDNGVGNQGLSVPIRGPAGQFA 114

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176
              F V        +  FT+E      ++I+ AH    + +        K  S  + L+ 
Sbjct: 115 --LFTVNDNCKDGCWAKFTAEH---HRQMILIAHYLNNKALEIE---HGKLMSPVKALSP 166

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE+  L L   GY+    A+ L +S HT+  Y+ +A  KL + N   A+A A+  G I
Sbjct: 167 RESDSLTLLAMGYSRAHAADTLKISEHTLRVYIEAARFKLGSANTTHAVAAALSRGLI 224


>gi|167565578|ref|ZP_02358494.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
          Length = 239

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 73/238 (30%), Gaps = 14/238 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L    + + Q+L  ++     R+    F        +  P  +  +     Y     
Sbjct: 7   DAYLQFSAAENEQQLFRQIAAYSKRL---GFEYCCYGIRVPLPISKPAVAIFDTYPNGWM 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +    +     D  +         I+W                           G+A   
Sbjct: 64  ERYQEMNYLEVDPTVRDGALSTNMIVWPEASRSDETT-----LWNDARDHGLAVGVAQSS 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTE 176
                  G +        L +  I +       +      L  +         +   LT 
Sbjct: 119 WAPRGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L   G+G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|319943176|ref|ZP_08017459.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
 gi|319743718|gb|EFV96122.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
          Length = 237

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 10/236 (4%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
             L    +    ++      I+    A  F           P  +  I  + NY      
Sbjct: 6   EELIRHHADESTDMRTVFSTIEKAAHALAFDHVAYCYQASLPASKPRITLIDNYPKAWRA 65

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
                     D  L        PI+W       V         R         G +  V+
Sbjct: 66  RYLEAGYLEQDPRLQCGARSQRPIMWTDELFSEVPA-----LWRDSHEHGLCHGWSQSVQ 120

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERE 178
            G    G    +     L+   + E             T    +   + ++  R+LT RE
Sbjct: 121 DGPGGMGMTSLSRTLPALSAHELNEKYDRMQWLAQMTHTLLSRIIRSQNAARVRHLTSRE 180

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+   DG +S++IA+ L LS +TV+ ++ +   KL+  N+  A+ +A+  G I
Sbjct: 181 IEVLKWTADGKSSQDIADILTLSKNTVDFHIKNTVQKLNVPNKTAAVVQAVLLGLI 236


>gi|66277262|gb|AAY44562.1| LuxR-like protein [Aeromonas sp. SF6-7]
          Length = 260

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 9/229 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     L    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTDNHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    +       + L        GI+FP+     +NG
Sbjct: 74  ACDPVIPLARKQTLPIYWNRLDERARFLPEGTMDVMGLAAEFGLRNGISFPLHGATGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       +      S     LTERET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDSDPKDPLTERETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSTG 241


>gi|86750432|ref|YP_486928.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573460|gb|ABD08017.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           HaA2]
          Length = 240

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 7/236 (2%)

Query: 3   ENTLT----GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58
           E+TLT      ++++   ++ +L  +             I +     ++Q     LH + 
Sbjct: 7   EDTLTFVAALDRANTPDIVADKLLGVVRPFGYSQVLAGIIPTPRTSVKQQIANVVLHRWP 66

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
           L   +        + D  +   ++   P +W  +  +   ++     +R  G      G 
Sbjct: 67  LRWSERYFSRGYLFEDPTIRRVSTSSEPFVWSEL--QVGPDARANEIMREAGEFGLGCGF 124

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
             P+     ++  +    +   L                   L+L +K + A   LT+RE
Sbjct: 125 TVPMITLDGQSAGLSIAGDRAELPPSHRGMVQLVAMYAFLRSLKLGEKPTPAI-TLTKRE 183

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L    +G T  EI++ L +S H V+        KL AVNRIQA+A A+R G I
Sbjct: 184 ADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGII 239


>gi|66277258|gb|AAY44560.1| LuxR-like protein [Aeromonas veronii]
          Length = 258

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%)

Query: 12  SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +S+ +   RL  +  R      +  Y     +    ++  +   +   +           
Sbjct: 14  TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
              D  +       LPI W  + E    ++      + L        GI+FP+     +N
Sbjct: 73  LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132

Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184
           G + F +     ++++++E           +    + +   + S     LT+RET CL  
Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK I  G +
Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|66277260|gb|AAY44561.1| LuxR-like protein [Aeromonas veronii]
          Length = 258

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%)

Query: 12  SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +S+ +   RL  +  R      +  Y     +    ++  +   +   +           
Sbjct: 14  TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
              D  +       LPI W  + E    ++      + L        GI+FP+     +N
Sbjct: 73  LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGEN 132

Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184
           G + F +     ++++++E           +    + +   + S     LT+RET CL  
Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK I  G +
Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940151|gb|AAX12614.1| LuxR-type transcriptional regulator [Aeromonas sp. 11m]
          Length = 260

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277280|gb|AAY44571.1| LuxR-like protein [Aeromonas caviae]
          Length = 258

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 9/230 (3%)

Query: 12  SSLQELSPRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +S+ +   RL  +  R      +  Y     +    ++  +   +   +           
Sbjct: 14  TSVTD-GDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNM 72

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
              D  +       LPI W  + E    ++      + L        GI+FP+     +N
Sbjct: 73  LACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAPGEN 132

Query: 130 GYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184
           G + F +     ++++++E           +    + +   + S     LT+RET CL  
Sbjct: 133 GILSFITSER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK I  G +
Sbjct: 192 ASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|14586760|gb|AAK70352.1|AF333007_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           vietnamiensis]
          Length = 239

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           S+ ++       I    K   F        +  P  +  +     Y              
Sbjct: 13  SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +         I+W  +              +         G+A          G 
Sbjct: 73  EIDSTVRDGALNTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185
           +        L    I       +       +        + S A    LT RE   L   
Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 AEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|198283772|ref|YP_002220093.1| LuxR family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665417|ref|YP_002426403.1| autoinducer-binding transcriptional regulator, LuxR family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|71044540|gb|AAV53702.2| AfeR [Acidithiobacillus ferrooxidans]
 gi|198248293|gb|ACH83886.1| transcriptional regulator, LuxR family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517630|gb|ACK78216.1| autoinducer-binding transcriptional regulator, LuxR family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 237

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 71/223 (31%), Gaps = 11/223 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              L +     +   F        +  P  +       NY                D  +
Sbjct: 19  RQVLAMASEMARKLEFDYCAYGLRMPLPLVRPKTVLFSNYPAVWQARYQAQEYQAIDPTV 78

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
            H      P++W             +            AG+A   R      G +     
Sbjct: 79  RHAMRSPSPVVWSDDLFA-----PARELWEEARSFGLRAGLAHTCRDAGGMGGMLTLARA 133

Query: 138 -FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTS 191
              +   E   +A    + V    L + +  +   +      L+ RE   L+  G+G TS
Sbjct: 134 GETVTTAEWQAKACHILWLVQAVHLSMIRVIAPKLQPEIAVQLSCREVEVLRWTGEGKTS 193

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA  L ++  TVN ++  A  KL+AVN+  A+ +A   G +
Sbjct: 194 GEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAAMLGLL 236


>gi|59940103|gb|AAX12590.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-30]
 gi|59940105|gb|AAX12591.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940029|gb|AAX12553.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 261

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 10/244 (4%)

Query: 1   MSENTLT--GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58
           M ++ L    +  +S+ +      LI        +  Y     +    +++ +   +   
Sbjct: 1   MKQDQLLEYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRRKVVLFNQCP 60

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAG 117
                          D  +       LPI W  + E    ++      + L        G
Sbjct: 61  DSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNG 120

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSA 170
           I+FP+     +NG ++        ++++++E           +       + +  +    
Sbjct: 121 ISFPLHGAAGENGIILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDP 180

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+RET CL  A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK + 
Sbjct: 181 QEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVS 240

Query: 231 FGYI 234
            G +
Sbjct: 241 SGIL 244


>gi|167552822|ref|ZP_02346573.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322659|gb|EDZ10498.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 240

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++  +   L  ++    EV +       + ++           +     ++RE 
Sbjct: 126 PNRALGFLSISRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|12620901|gb|AAG61130.1|AF330019_1 AHL receptor [Burkholderia multivorans]
          Length = 239

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           S+ ++       I    K   F        +  P  +  +     Y              
Sbjct: 13  SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMTHYQAQNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +         I+W  + +            R      P  G+A          G 
Sbjct: 73  EIDSTVRDGALSTNMIVWPDVDKIEPC-----PLWRDARDFGPSVGVAQSSWAARGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185
           +        L    I         +      L  +         A   LT RE   L   
Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLSPEARVALTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 AEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|66277274|gb|AAY44568.1| LuxR-like protein [Aeromonas sp. CCRC 13880]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E        C  +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMCNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|299771984|ref|YP_003734010.1| Transcriptional activator protein phzR [Acinetobacter sp. DR1]
 gi|284158686|gb|ADB80058.1| AqsR [Acinetobacter sp. DR1]
 gi|298702072|gb|ADI92637.1| Transcriptional activator protein [Acinetobacter sp. DR1]
          Length = 238

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F              +     L+NY                D  + H    L P++W 
Sbjct: 32  LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVKQQYVRVDPTVQHCMLSLQPLVWS 91

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
           S   ++    S +             G A   R      G +        L  +     +
Sbjct: 92  S---QSANTQSQKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSTDQLLEKEQKAQY 148

Query: 151 ----GACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                    V +   ++  +   A  NL  T RE   L+   +G TS EIA+ LG++  T
Sbjct: 149 TNMFWLSQTVHSSIAKIVNETEFAQFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERT 208

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           VN +L ++  KL+  N+I A  +A+  G +
Sbjct: 209 VNFHLCNSMQKLNVNNKISAAIRAVMLGIL 238


>gi|66277278|gb|AAY44570.1| LuxR-like protein [Aeromonas sp. CCRC 13980]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940049|gb|AAX12563.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. veronii]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940071|gb|AAX12574.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940073|gb|AAX12575.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940077|gb|AAX12577.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
 gi|59940085|gb|AAX12581.1| LuxR-type transcriptional regulator [Aeromonas sp. AE-51]
 gi|59940087|gb|AAX12582.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940099|gb|AAX12588.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-24]
 gi|59940113|gb|AAX12595.1| LuxR-type transcriptional regulator [Aeromonas jandaei]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940091|gb|AAX12584.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940093|gb|AAX12585.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940081|gb|AAX12579.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940101|gb|AAX12589.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940163|gb|AAX12620.1| LuxR-type transcriptional regulator [Aeromonas sp. 26m]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|227821019|ref|YP_002824989.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227340018|gb|ACP24236.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 257

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 82/230 (35%), Gaps = 3/230 (1%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPN 66
             + + L+     +  ++       F  + I S       +      + N   +  +  +
Sbjct: 27  ASEIAKLETQFDIIRYMRRITHIFGFKTFLICSIPPIDMERLSAATVISNMPAELLNKYD 86

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEET--VIESSGQLSVRLEGGLLPFAGIAFPVRL 124
            L        +        P        E+      S    + +      F    FPV  
Sbjct: 87  SLSMLRFSTGVRRLRETTTPFQITLEDWESEGGTPDSAADYIVMLRENGIFQANYFPVHD 146

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                G VI       L     +E       V     E+     S++  L+ERE  CL  
Sbjct: 147 AEGGRGAVILMGPEADLPMTAAMELQMIAIHVYNRLAEIGSVWKSSSTTLSEREIQCLSW 206

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G TS EIA  LGLS HTVN YL   T KLDAVNR QA+ KA++ GYI
Sbjct: 207 TAAGKTSAEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 256


>gi|168259766|ref|ZP_02681739.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|200391066|ref|ZP_03217677.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603511|gb|EDZ02057.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205351245|gb|EDZ37876.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 240

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++  +   L  ++    EV +       + ++           +     ++RE 
Sbjct: 126 PNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|161502928|ref|YP_001570040.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864275|gb|ABX20898.1| hypothetical protein SARI_00987 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 251

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ + +   L     R++   F  Y++      P  +  I     Y       
Sbjct: 25  LLRFQEMATAEGVYTELQYQTQRLE---FDYYSLCVRHPVPFTRPKISLRTTYPQAWVTH 81

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L              +  + V+    Q             G+   V L
Sbjct: 82  YQAENYIAIDPVLK-----PENFREGHLHWDNVLFHEAQAMWDAAQRFGLRRGVTQSVML 136

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERET 179
                G++  +   L  ++    EV +       + ++    L            ++RE 
Sbjct: 137 PNRAVGFLSVSRGSLGCSSFTYDEVELRLQLLARESLSALTRLEDDIVMVPEMRFSKREK 196

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 197 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 251


>gi|13488404|ref|NP_109411.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14028158|dbj|BAB54750.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 242

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 4/222 (1%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S   +         R    NF +  +        ++++      +  +          
Sbjct: 19  ARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREI--LADGWSPEWHHRYVTEAY 76

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +        P  W  +    ++    +L +          GI  P+ +     G
Sbjct: 77  FLHDPCVAQCRHSPEPFRWGELPVARLV-PRAKLVMDEAAEFGMKEGICIPIHVPLAGPG 135

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGY 189
            V   S+ + +    +      C         L      +    LT RE   L+ +  G 
Sbjct: 136 VVTMASDRMEVPPSAMPLIETLCVHTFRSLSALGTPGDGNEPTPLTARERELLEWSAQGK 195

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++++IA  LG++ +TV ++  +   KLDA+N   AI KA+R 
Sbjct: 196 STDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRR 237


>gi|66277270|gb|AAY44566.1| LuxR-like protein [Aeromonas sp. ym3]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940095|gb|AAX12586.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940097|gb|AAX12587.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|89027173|gb|ABD59317.1| AhyR [Aeromonas hydrophila]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940157|gb|AAX12617.1| LuxR-type transcriptional regulator [Aeromonas sp. 15m]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYEYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940107|gb|AAX12592.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
          Length = 258

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 7/209 (3%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            +  Y     +    ++  +   +   +              D  +       LPI W  
Sbjct: 34  GYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNR 93

Query: 92  IQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           + E    ++      + L        GI+FP+     +NG + F +     ++++++E  
Sbjct: 94  LDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFITSER-ASSDLLLESS 152

Query: 149 --AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                    +    + +   + S     LT+RET CL  A +G TS EIA  LG++  TV
Sbjct: 153 PILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFWASEGKTSGEIACILGITERTV 212

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           N +L   T K  ++NR QAIAK I  G +
Sbjct: 213 NYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940045|gb|AAX12561.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940125|gb|AAX12601.1| LuxR-type transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida]
 gi|59940159|gb|AAX12618.1| LuxR-type transcriptional regulator [Aeromonas sp. 17m]
          Length = 260

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|117618881|ref|YP_855090.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560288|gb|ABK37236.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 261

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 8/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            ++        ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 IILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 193

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 194 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 244


>gi|59940133|gb|AAX12605.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|238027315|ref|YP_002911546.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237876509|gb|ACR28842.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 234

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 64/215 (29%), Gaps = 9/215 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +        +           P        + NY     +    L     D      N+ 
Sbjct: 25  LSRVAAILGYEFVAYGIRRPLPLSNPPSLTVSNYPARWQERYQGLRLAEIDPVARAANAS 84

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
             P++W S   ++      Q   +         G +   R      G +        +  
Sbjct: 85  DRPVVWSSQGNDS-----DQAFWQEASSFGLMHGWSSATRGAEGTLGVLSLARGGDAIDE 139

Query: 144 EVI----IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                     H                      NLT RET  L+   DG T+ EI+  L 
Sbjct: 140 VERDRNEFIVHWLANVAHAALAPFLPAAGEPEANLTSRETDVLKWTADGKTAYEISRILS 199

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TVN ++ +   KL   N+IQA+AKA   G +
Sbjct: 200 ISESTVNFHVKNIMSKLGTSNKIQAVAKAALTGML 234


>gi|66277266|gb|AAY44564.1| LuxR-like protein [Aeromonas sp. ym1]
          Length = 260

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 84/229 (36%), Gaps = 9/229 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     L    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAYTDNHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPVIRLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       +      +     LT+RET CL 
Sbjct: 134 ILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDNDPKDPLTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            A +G TS EIA  LG++  TVN +L   T K  ++NR  AIAK +  G
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGVSTG 241


>gi|59940127|gb|AAX12602.1| LuxR-type transcriptional regulator [Aeromonas sp. Manipal A1]
 gi|59940139|gb|AAX12608.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940153|gb|AAX12615.1| LuxR-type transcriptional regulator [Aeromonas sp. 12m]
 gi|59940161|gb|AAX12619.1| LuxR-type transcriptional regulator [Aeromonas sp. 19m]
          Length = 260

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940149|gb|AAX12613.1| LuxR-type transcriptional regulator [Aeromonas sp. 1m]
          Length = 260

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDEPQEALTDRETECLV 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940047|gb|AAX12562.1| LuxR-type transcriptional regulator [Aeromonas jandaei]
 gi|59940057|gb|AAX12567.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
 gi|59940079|gb|AAX12578.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940147|gb|AAX12612.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 70363]
          Length = 260

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|145300631|ref|YP_001143472.1| transcriptional activator AsaR [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|61218504|sp|P0A3J5|AHYR_AERHY RecName: Full=Transcriptional activator protein AhyR/AsaR
 gi|61218505|sp|P0A3J6|AHYR_AERSA RecName: Full=Transcriptional activator protein AhyR/AsaR
 gi|899145|emb|CAA61654.1| AhyR [Aeromonas hydrophila]
 gi|1519237|gb|AAB70018.1| transcriptional activator [Aeromonas salmonicida]
 gi|142853403|gb|ABO91724.1| transcriptional activator AsaR [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 260

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|134293938|ref|YP_001117674.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137095|gb|ABO58209.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 239

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 13/233 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +     Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAR 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +                        G+A         
Sbjct: 70  NYIEIDSTVREGALSTNMIVWPDVDRIDPC-----PLWEDARDFGLAVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSC 181
            G +  +     L    I              + +++ F+ L K   +A   LT RE   
Sbjct: 125 FGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-LPKLSPAAGVTLTAREREV 183

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L    +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 184 LCWTAEGKTACEIGQILSISERTVNFHVNNILEKLAATNKVQAVVKAIAAGLI 236


>gi|283832684|ref|ZP_06352425.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220]
 gi|291072359|gb|EFE10468.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220]
          Length = 240

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L      ++   F  Y +      P  +        Y       
Sbjct: 14  LLRFQEMATAEDVYNELQQQTQHLE---FDFYALCVRHPVPFTRPKTSLYTTYPKAWVAH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L              +     +    Q             G+   + L
Sbjct: 71  YQSENYFAIDPVLK-----PENFSQGHLPWSDTLFRDAQPLWDAARNHGLRKGMTQCLML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERET 179
                G++  +   +  +     EV +       + ++  + L            ++RE 
Sbjct: 126 PNRALGFLSVSRANIRNSRLANDEVELRMQLLVRESLSVLMRLEDDMVMVPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|86747544|ref|YP_484040.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570572|gb|ABD05129.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           HaA2]
          Length = 242

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 80/239 (33%), Gaps = 8/239 (3%)

Query: 2   SENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICELH 55
            E+ L G+++    + + RL         ++ I +  F+ Y + +          +   +
Sbjct: 4   GESHLWGRRALEFVDAADRLDAPSLVRQFESHIASAGFSAYIMAALPAPGAGLAELTLAN 63

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
            +     ++         D    H  + + P  W     +   + +    +         
Sbjct: 64  GWPRGWFELYVGRNYMAVDPVPRHGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEFGLV 123

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
            G   P+         +    E   L                     L  +     R LT
Sbjct: 124 RGYCIPLHYDDGG-AMISMAGEAPDLDPTAKGAMQLIGVYAHNRLRSLN-RPKPQRRLLT 181

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L  A  G T+ EI+  L ++  TV  +L  A+ KL+AVNR  A+AKA+  G I
Sbjct: 182 SRECEILSWAAQGKTAWEISMILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI 240


>gi|306021776|gb|ADM80305.1| LuxR [Aeromonas sobria]
          Length = 237

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 19  PRLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
            RL  +  R      +  Y     +    ++  +   +   +              D  +
Sbjct: 2   DRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNMLACDPVI 61

Query: 78  FHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
                  LPI W  + E    ++      + L        GI+FP+     +NG + F +
Sbjct: 62  QLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT 121

Query: 137 EFLMLANEVIIE----AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTS 191
                ++++++E           +    + +   + S     LT+RET CL  A +G TS
Sbjct: 122 SER-ASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFWASEGKTS 180

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA  LG++  TVN +L   T K  ++NR QAIAK I  G +
Sbjct: 181 GEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 223


>gi|56695286|ref|YP_165634.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
 gi|56677023|gb|AAV93689.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
          Length = 239

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 15/234 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
               +S+L++L      +++ ++  +   + ++SA D             Y     +   
Sbjct: 13  DLDATSALEDLERVTIKLRDTLEIDHIVYHWVDSAGDQ-------YGCATYPKAWQERYL 65

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +        P+ W+ +     +  +           +   G + P+R   
Sbjct: 66  ERNYHRIDPVILGCFQRFHPVDWKRLDWSGKVAKA--FLQDALKHGVGNQGYSIPIRGPN 123

Query: 127 HKNGYVIFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSS-AARNLTERETS 180
            +             A          +     +      LE  + R     RNL+ RE  
Sbjct: 124 GQFALFTVNHVCDDQAWSEFTEIYGRDLILIAHFFNRKALEFERSRQPDQPRNLSPREVD 183

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + L   GY+  ++A  L +S HT+  Y+ SA  KL A+N   AIA A+  G I
Sbjct: 184 AMTLLALGYSRAQVAHSLSISEHTLRVYIESARFKLGALNTTHAIATAMSRGLI 237


>gi|66277276|gb|AAY44569.1| LuxR-like protein [Aeromonas sp. CCRC 13881]
          Length = 260

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|62180524|ref|YP_216941.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583549|ref|YP_002637347.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62128157|gb|AAX65860.1| transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family)
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224468076|gb|ACN45906.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322715000|gb|EFZ06571.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 240

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 74/235 (31%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ ++    L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDFYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPPAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++  +   L  ++    EV +       + ++           +     ++RE 
Sbjct: 126 PNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|14586749|gb|AAK70347.1|AF333002_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           cepacia]
          Length = 239

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 67/229 (29%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           S+ ++       I    K   F        +  P  +  +     Y              
Sbjct: 13  SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +         I+W  + +            R         G+A          G 
Sbjct: 73  EIDSTVRDGALSTNMIVWPDVDKIEPC-----PLWRDARDFGLSVGVAQSSWAARGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARNLTE--RETSCLQLA 185
           +        L    I       +       +        + S    +T+  RE   L   
Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTQTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 AEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236


>gi|14993797|gb|AAK73190.1| transcriptional activator CsaR [Pseudomonas chlororaphis subsp.
           aureofaciens]
          Length = 241

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 74/225 (32%), Gaps = 10/225 (4%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           QE +    L++  +++  F  Y        P  +  I    +Y     +          D
Sbjct: 22  QESAQVFALLEREVRSLGFDFYAYGVRHSIPFTRPKIDIYGSYPQAWVERYQQQNYAAID 81

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             + +       ++W              +            G   P+         +  
Sbjct: 82  PTILNGLRSTEMVVWSDALF-----GKSSVLWGEAREWGLRVGATLPIHTPDSALSVLSV 136

Query: 135 TSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAARN----LTERETSCLQLAGDGY 189
             E   ++   + E       +I    + L +    +++     L+ RE   LQ   DG 
Sbjct: 137 ARECTAISAVELEEIRLRLRCIIELATMRLGELGHPSSQAEQLELSAREREILQWTADGK 196

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S EIA  LG+SV+TVN +L     K  A N+  A A A   G I
Sbjct: 197 SSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLGLI 241


>gi|260467388|ref|ZP_05813560.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028848|gb|EEW30152.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 242

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 4/222 (1%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S + +     L   R   RNF +  +        ++++      +  +          
Sbjct: 19  ARSAEAILHEFRLAMERYGLRNFLITGLPVPHGTDWQREI--LADGWSPEWHHRYVSEEY 76

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +        P  W  +    ++ +  +L +          GI  P+ +     G
Sbjct: 77  FLHDPCVAQCRHSPEPFRWAELPAARLV-ARAKLVMDEAAEFGMKEGICVPIHVPLAGPG 135

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGY 189
            V   S+ + +    +      C         L           LT RE   L+ +  G 
Sbjct: 136 VVTMASDRMDVPPSAMPLIETLCVHTFRSLSGLGTPGDGYEPTPLTARERELLEWSAQGK 195

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++++IA  LG++ +TV ++  +   KLDA+N   AI KA+R 
Sbjct: 196 STDDIACILGVTRNTVESHQRNIRAKLDAINVAHAIVKALRR 237


>gi|59940031|gb|AAX12554.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 11/244 (4%)

Query: 1   MSENTLT--GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58
           M ++ L    +  +S+ +      LI        +  Y     +    +++ +   +   
Sbjct: 1   MKQDQLLEYLEHLTSVTDEDRLAELIGRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCP 60

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAG 117
                          D  +       LPI W  ++     ++      + L        G
Sbjct: 61  DSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNG 120

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSA 170
           I+FP+     +NG + F +     ++++++E           +       + +  +    
Sbjct: 121 ISFPLHGAAGENGILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDP 179

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+RET CL  A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK + 
Sbjct: 180 QEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVS 239

Query: 231 FGYI 234
            G +
Sbjct: 240 SGIL 243


>gi|320191891|gb|EFW66538.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. EC1212]
          Length = 240

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   F  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMETAEEVYHEIELQAQQLE---FDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W          +  Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|163758577|ref|ZP_02165664.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162283867|gb|EDQ34151.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 237

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 3/227 (1%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           K +++  EL+  L  + +    R F+++  +    F  R      L N   +  +  + L
Sbjct: 12  KTATTEHELAVSLQALTSEFDFRFFSIF--DIPATFSDRLSKHIRLSNLPSEYIEEYDSL 69

Query: 69  IETYGDDFLFHFNSGLLPI-IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                            P+  +  +  +       Q+   +        G+ FPV     
Sbjct: 70  NLLSNSSVFAMLRQSTAPMTRFLDLAVKERPTEEQQVMRAVFEKHNMTMGVYFPVHGSNG 129

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +   + F      L+                 + ++  K  + A  +T RE   L  A +
Sbjct: 130 RRAAMAFYGTRPALSFAETGVLGLCVLHAFDAYSKMTNKTGTKANGITTRELEVLHWAAN 189

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G TS EIA  L LS HTVN Y+ SA  KLD VNR Q +AKA+R   I
Sbjct: 190 GKTSTEIAAILSLSDHTVNTYMNSAMRKLDCVNRTQLVAKALRLHLI 236


>gi|59940135|gb|AAX12606.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|53717160|ref|YP_105961.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           mallei ATCC 23344]
 gi|53721911|ref|YP_110896.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|67643283|ref|ZP_00442030.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei GB8 horse 4]
 gi|76818142|ref|YP_337635.1| BpsR [Burkholderia pseudomallei 1710b]
 gi|121598108|ref|YP_989940.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei SAVP1]
 gi|124382764|ref|YP_001024423.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10229]
 gi|126442328|ref|YP_001062292.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 668]
 gi|126445689|ref|YP_001078154.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10247]
 gi|126458533|ref|YP_001075258.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106a]
 gi|134278985|ref|ZP_01765698.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 305]
 gi|167000171|ref|ZP_02265991.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei PRL-20]
 gi|167723232|ref|ZP_02406468.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei DM98]
 gi|167742204|ref|ZP_02414978.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 14]
 gi|167819378|ref|ZP_02451058.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 91]
 gi|167827752|ref|ZP_02459223.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 9]
 gi|167849226|ref|ZP_02474734.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei B7210]
 gi|167906168|ref|ZP_02493373.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914491|ref|ZP_02501582.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 112]
 gi|167922390|ref|ZP_02509481.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei BCC215]
 gi|217418339|ref|ZP_03449846.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 576]
 gi|226197543|ref|ZP_03793118.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507418|ref|ZP_04520133.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei MSHR346]
 gi|242313785|ref|ZP_04812802.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106b]
 gi|254174155|ref|ZP_04880817.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei ATCC 10399]
 gi|254183341|ref|ZP_04889933.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1655]
 gi|254193094|ref|ZP_04899529.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei S13]
 gi|254200806|ref|ZP_04907171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei FMH]
 gi|254204776|ref|ZP_04911129.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei JHU]
 gi|254263057|ref|ZP_04953922.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1710a]
 gi|254300240|ref|ZP_04967686.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 406e]
 gi|254357025|ref|ZP_04973300.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei 2002721280]
 gi|37223137|gb|AAQ90167.1| transcriptional activator [Burkholderia pseudomallei]
 gi|40646736|gb|AAR88244.1| BpsR [Burkholderia pseudomallei]
 gi|43469096|gb|AAS46624.1| BpsR [Burkholderia pseudomallei]
 gi|52212325|emb|CAH38349.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|52423130|gb|AAU46700.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           mallei ATCC 23344]
 gi|76582615|gb|ABA52089.1| BpsR [Burkholderia pseudomallei 1710b]
 gi|121225906|gb|ABM49437.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei SAVP1]
 gi|124290784|gb|ABN00054.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10229]
 gi|126221819|gb|ABN85324.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 668]
 gi|126232301|gb|ABN95714.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106a]
 gi|126238543|gb|ABO01655.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10247]
 gi|134249404|gb|EBA49485.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 305]
 gi|147748418|gb|EDK55493.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei FMH]
 gi|147754362|gb|EDK61426.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei JHU]
 gi|148026052|gb|EDK84175.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei 2002721280]
 gi|157809975|gb|EDO87145.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 406e]
 gi|160695201|gb|EDP85171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei ATCC 10399]
 gi|169649848|gb|EDS82541.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei S13]
 gi|184213874|gb|EDU10917.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1655]
 gi|217397643|gb|EEC37658.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 576]
 gi|225930152|gb|EEH26164.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999623|gb|EEP49047.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei MSHR346]
 gi|238524594|gb|EEP88026.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei GB8 horse 4]
 gi|242137024|gb|EES23427.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106b]
 gi|243063823|gb|EES46009.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei PRL-20]
 gi|254214059|gb|EET03444.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1710a]
          Length = 239

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 14/238 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L    + + Q+L  ++     R+    F        +  P  + ++     Y     
Sbjct: 7   DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +    +     D  +         I+W                           G+A   
Sbjct: 64  ERYQEMNYLEVDPTVREGALSSNMIVWPEASASDATT-----LWSDARDHGLAVGVAQSS 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176
                  G +        L +  I    ++A+       +        + +      LT 
Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L   G+G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|66277264|gb|AAY44563.1| LuxR-like protein [Aeromonas sp. SF8-170]
          Length = 260

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|170743557|ref|YP_001772212.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168197831|gb|ACA19778.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46]
          Length = 245

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 1/226 (0%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++++ + +  +L      +   +  L T+      P  ++       Y  +         
Sbjct: 19  RTATPENVRDQLLRTLAGVGVEHVLLATLRICDAVPCDRRPTVFAGTYPDEWARRYYARD 78

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +           W         + + +  +   G      G   P+       
Sbjct: 79  YILHDPVVRGVGERGSGFAWSDPGLCAPDDRAARRVLDEAGEFGLREGFTLPLLTLEGDT 138

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDG 188
             V F  E L L+  V           +   L L K  +   A  L+ RE   LQ A DG
Sbjct: 139 AGVSFVGEKLDLSPAVRGMLTLVGTYALGQVLLLAKGETGPLAEPLSPRERESLQWAADG 198

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + +EIA+ +G+S H    +L +   KL   +R  A+A  +R G I
Sbjct: 199 KSDQEIADAMGISAHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 244


>gi|167897824|ref|ZP_02485226.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 7894]
          Length = 239

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 14/238 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L    + + Q+L  ++     R+    F        +  P  + ++     Y     
Sbjct: 7   DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +    +     D  +         I+W                           G+A   
Sbjct: 64  ERYEEMNYLEVDPTVREGALSSNMIVWPEASASDATT-----LWSDARDHGLAVGVAQSS 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176
                  G +        L +  I    ++A+       +        + +      LT 
Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L   G+G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|48375112|gb|AAT42219.1| PcoR [Pseudomonas fluorescens]
          Length = 234

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 15/230 (6%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +L   S  L  +       +  L+ +   +  P     I  + NY        +      
Sbjct: 10  TLDAWSQVLFSLAKDCGFSS-VLFGVKPTISTPFSSSTI--ISNYSKSWRAFYDSNACYE 66

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D  +FH  +  LP++W     E  I                 +G+  P+     + G +
Sbjct: 67  VDPVVFHCLNSSLPLVWTK---ENFINPPELQLYEAASASGVRSGLCMPIHGPRGEFGML 123

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFL--------ELFKKRSSAARNLTERETSCLQL 184
            F ++      ++I       + ++ D+L           +K       LT RE  CL+ 
Sbjct: 124 NFITDEKSP-ADLINAQGLPQFALMRDYLIESFQKLQNASEKEFETPPXLTARELECLKW 182

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G TS EI+  L  +  TVN ++ +   K +A +R  A+   IR G +
Sbjct: 183 VAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232


>gi|59940035|gb|AAX12556.1| LuxR-type transcriptional regulator [Aeromonas caviae]
          Length = 260

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 89/234 (38%), Gaps = 9/234 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +  +++ +      LI        +  Y     +    +++ +   +             
Sbjct: 11  EHLTTVTDEDRLAELISRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCPDSWVQAYTAN 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                D  +       LPI W  ++     ++      + L        GI+FP+     
Sbjct: 71  HMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAG 130

Query: 128 KNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETS 180
           +NG + F +     ++++++E           +       + +  +       LT+RET 
Sbjct: 131 ENGILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETE 189

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           CL  A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 190 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|254511393|ref|ZP_05123460.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
 gi|221535104|gb|EEE38092.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
          Length = 239

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 15/240 (6%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+     + +++L EL+     +++R++  +   + ++ A D             Y   
Sbjct: 7   LSQILEDLENTNTLDELTSVSVQLRDRLQIDHITYHWVDGAGDQ-------YGFTTYSDA 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                        D  +         + W+ +                +   +   G + 
Sbjct: 60  WDARYREKNYHRIDPVILGCFQRFHAVDWKQLNWSGKA--VRAFLQDAQDHGVGNQGYSI 117

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSS-AARNL 174
           P+R    +       S    +A +  I     +     Y +    LE  + R     R L
Sbjct: 118 PLRGPSGQFALFTVNSTCDDVAWQAFITNYGRDLILVAYFLNRKALEFAQNRQPETTRAL 177

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   + L   GY+  ++A  L +S HT+ AY+ SA  KL A N   AIA A+  G I
Sbjct: 178 SPREIDAMTLLALGYSRAQVAHSLSISEHTLRAYIESARSKLGAQNTTHAIATALSRGLI 237


>gi|167584437|ref|ZP_02376825.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 239

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 66/229 (28%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           S+ ++       I    K   F        +  P  +  +     Y              
Sbjct: 13  SAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQEQNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +         I+W         ++                G+A          G 
Sbjct: 73  DIDSTVRDGALSTNLIVWPDAD-----KAGASPLWADARASGLAVGVAQSSWAARGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185
           +        L    I       +       +        + +   N  LT RE   L   
Sbjct: 128 LSIARHADRLTPAEINMLTLQTNWLANLSHSLMSGFMVPKLAPEANVVLTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 188 AEGKTACEIGQILNISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|4103042|gb|AAD12726.1| transcriptional activator [Burkholderia cepacia]
          Length = 239

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 68/232 (29%), Gaps = 11/232 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S+ ++       I    K   F        +  P  +  +     Y           
Sbjct: 10  QQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQ 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +         I+W  +              +         G+A         
Sbjct: 70  NYIEIDSTVRDGALNTNMIVWPDVDRIDPC-----PLWQDARDFGLSVGVAQSSWAARGA 124

Query: 129 NGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    I       +       +        + S A    LT R+   L
Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARDREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|91974882|ref|YP_567541.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91681338|gb|ABE37640.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB5]
          Length = 242

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 78/242 (32%), Gaps = 10/242 (4%)

Query: 1   MSENT--LTGKKSSSLQELSPRLH------LIQNRIKARNFALYTINSALDFPRRQQLIC 52
           MS +     G+++    + + RL         +  I +  F+ Y +            + 
Sbjct: 1   MSADEGNQWGRRALEFVDAADRLDGPSLIRQFETHIASGGFSAYIMAGLPSPGAGLADLT 60

Query: 53  ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112
             + +     ++         D    H  + + P  W     +     +    +      
Sbjct: 61  LANGWPRGWFELYVRENYIAVDPVPRHGATTVQPFEWSEAPYDRKQNRAAHKVMTHATEF 120

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
               G   P+         +    +   L                     L  +     R
Sbjct: 121 GLVRGYCIPLHYDEGGAV-ISMAGDQPDLDPVAKGAMQLIGVYAHNRIRSL-HRPKPQRR 178

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L  A  G T+ EI+  L ++  TV  +L  A+ KL+AVNR  A+AKA+ FG
Sbjct: 179 LLTSRECEILLWAAHGKTAWEISIILHIAERTVKFHLIEASKKLNAVNRTAAVAKALAFG 238

Query: 233 YI 234
            I
Sbjct: 239 LI 240


>gi|15964582|ref|NP_384935.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309328|ref|ZP_07588991.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307320064|ref|ZP_07599485.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15073760|emb|CAC45401.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894279|gb|EFN25044.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306900197|gb|EFN30815.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 277

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 80/230 (34%), Gaps = 3/230 (1%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPN 66
             + + L+     +  ++   +   F  + I S       +      + N   +  +  +
Sbjct: 47  ASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMPAELLNKYD 106

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEET--VIESSGQLSVRLEGGLLPFAGIAFPVRL 124
            L        +        P        E       S    + +      F    FPV  
Sbjct: 107 SLSMLRFSTGVRRLRETTTPFQVMLEDWEREGGKPDSAADYIAMLRENGIFQANYFPVHD 166

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                G VI       L     +E       V     E+     +    L+ERE  CL  
Sbjct: 167 AEGGRGAVILMGPEAELPMTAAMELQMIAIHVYNRLAEIGSVWKNTNTVLSEREIQCLSW 226

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G TS EIA  LGLS HTVN YL   T KLDAVNR QA+ KA++ GYI
Sbjct: 227 TAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 276


>gi|59940067|gb|AAX12572.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  ++     ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940145|gb|AAX12611.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 21725]
          Length = 260

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVITDF---LELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFQAAIRNVRVSLRDDEPQGALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|83716915|ref|YP_439706.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|167578146|ref|ZP_02371020.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167616276|ref|ZP_02384911.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257142845|ref|ZP_05591107.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650740|gb|ABC34804.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 239

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 14/238 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L    + + Q+L  ++     R+    F        +  P  + ++     Y     
Sbjct: 7   DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +    +     D  +         I+W                           G+A   
Sbjct: 64  ERYQEMNYLEVDPTVRDGALSSNMIVWPEASANDATT-----LWSDARDHGLAVGVAQSS 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176
                  G +        L +  I    ++A+       +        + +      LT 
Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L   G+G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|59940075|gb|AAX12576.1| LuxR-type transcriptional regulator [Aeromonas caviae]
          Length = 260

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  ++     ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940123|gb|AAX12600.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
 gi|59940137|gb|AAX12607.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  ++     ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|71057001|emb|CAI51628.1| eR transcriptional regulator [Acidithiobacillus ferrooxidans]
          Length = 214

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 68/208 (32%), Gaps = 11/208 (5%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           F        +  P  +       NY                D  + H      P++W   
Sbjct: 11  FDYCAYGLRMPLPLVRPKTVLFSNYPAVWQARYQAQEYQAIDPTVRHAMRSPSPVVWSDD 70

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHG 151
                     +            AG+A   R      G +        +   E   +A  
Sbjct: 71  LFA-----PARELWEEARSFGLRAGLAHTCRDAGGMGGMLTLARAGETVTTAEWQAKACH 125

Query: 152 ACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             + V    L + +  +   +      L+ RE   L+  G+G TS EIA  L ++  TVN
Sbjct: 126 ILWLVQAVHLSMIRVIAPKLQPEIAVQLSCREVEVLRWTGEGKTSGEIANILNITERTVN 185

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  A  KL+AVN+  A+ +A   G +
Sbjct: 186 FHISKAMAKLNAVNKTAAVLQAAMLGLL 213


>gi|66277272|gb|AAY44567.1| LuxR-like protein [Aeromonas sp. ym4]
          Length = 260

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +          LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940129|gb|AAX12603.1| LuxR-type transcriptional regulator [Aeromonas sp. ABJ]
          Length = 260

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 13/225 (5%)

Query: 22  HLIQNRIKAR----NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             +   I        +  Y     +    ++  +   +                  D  +
Sbjct: 20  DRLAELIGRFTLGMGYDYYRFALIIPTSMQRPKVVLFNQCPDSWVQAYTANHMLACDPII 79

Query: 78  FHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
                  LPI W  + E    ++      + L        GI+FP+     +NG + F +
Sbjct: 80  QLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT 139

Query: 137 EFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                ++++++E           +       + +  +       LT+RET CL  A +G 
Sbjct: 140 AER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGK 198

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 199 TSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSCGIL 243


>gi|59940061|gb|AAX12569.1| LuxR-type transcriptional regulator [Aeromonas encheleia]
 gi|59940121|gb|AAX12599.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  ++     ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|46371737|gb|AAS90557.1| transcriptional activator [Burkholderia pseudomallei]
          Length = 239

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 14/238 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L    + + Q+L  ++     R+    F        +  P  + ++     Y     
Sbjct: 7   DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +    +     D  +         I+W                           G+A   
Sbjct: 64  ERYQEMNYLEVDPTVREGALSSNMIVWPEASASDATT-----LWSDARDHGLAVGVAQSS 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176
                  G +        L +  I    ++A+       +        + +      LT 
Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L   G+G T+ EI + L +S  TVN ++ +   KL A N++QA+ KAI  G I
Sbjct: 179 RERKVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|15802351|ref|NP_288377.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 EDL933]
 gi|15831908|ref|NP_310681.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751842|ref|ZP_02776864.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113]
 gi|168758227|ref|ZP_02783234.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401]
 gi|168771520|ref|ZP_02796527.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486]
 gi|168777340|ref|ZP_02802347.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196]
 gi|168790328|ref|ZP_02815335.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869]
 gi|168802260|ref|ZP_02827267.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508]
 gi|195939220|ref|ZP_03084602.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810274|ref|ZP_03252150.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206]
 gi|208816575|ref|ZP_03257695.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045]
 gi|208820421|ref|ZP_03260741.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042]
 gi|209399275|ref|YP_002271030.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115]
 gi|217329032|ref|ZP_03445113.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588]
 gi|254793566|ref|YP_003078403.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. TW14359]
 gi|261227589|ref|ZP_05941870.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255819|ref|ZP_05948352.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283093|ref|YP_003499911.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str.
           CB9615]
 gi|12516014|gb|AAG56931.1|AE005414_8 transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362122|dbj|BAB36077.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767387|gb|EDU31231.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196]
 gi|188014167|gb|EDU52289.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113]
 gi|189354905|gb|EDU73324.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401]
 gi|189359736|gb|EDU78155.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486]
 gi|189370214|gb|EDU88630.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869]
 gi|189375707|gb|EDU94123.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508]
 gi|208724790|gb|EDZ74497.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206]
 gi|208730918|gb|EDZ79607.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045]
 gi|208740544|gb|EDZ88226.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042]
 gi|209160675|gb|ACI38108.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115]
 gi|209767028|gb|ACI81826.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767030|gb|ACI81827.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767032|gb|ACI81828.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767034|gb|ACI81829.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767036|gb|ACI81830.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|217318379|gb|EEC26806.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588]
 gi|254592966|gb|ACT72327.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. TW14359]
 gi|290762966|gb|ADD56927.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str.
           CB9615]
 gi|320647124|gb|EFX15957.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H- str. 493-89]
 gi|320658009|gb|EFX25771.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320658581|gb|EFX26275.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668479|gb|EFX35306.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326342324|gb|EGD66105.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. 1044]
 gi|326344831|gb|EGD68578.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. 1125]
          Length = 240

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W          +  Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|59940115|gb|AAX12596.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  ++     ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940039|gb|AAX12558.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 9/211 (4%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            +  Y     L    +++ +   +           +      D  +    +  LPI W  
Sbjct: 34  GYDYYRFALILPTSMQRRKVVLFNQCPDSWVQAYTVNNMLACDPIIQLARTQTLPIYWNR 93

Query: 92  IQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           + E    ++      + L        GI+FP+     +NG + F +     ++++++E  
Sbjct: 94  LDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT-RERASSDLLLESS 152

Query: 149 --AHGACYQVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                    +    + + +   +       LTERET CL  A DG TS EIA  LG++  
Sbjct: 153 PILSWMSNYIFEAAIRIVRQSMREDDPQEALTERETECLFWASDGKTSGEIACILGITER 212

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKRVSSGIL 243


>gi|256022426|ref|ZP_05436291.1| DNA-binding transcriptional activator SdiA [Escherichia sp.
           4_1_40B]
          Length = 240

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W          +  Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|172064983|ref|YP_001815695.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997225|gb|ACB68142.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 239

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 73/234 (31%), Gaps = 15/234 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           + ++  +  E       +   ++A  F  Y     +  P  +  I    NY         
Sbjct: 11  SLEQVKTASEAFD---NLAPAVRALGFEYYAYVLRITIPITRPAIMGWSNYPEAWRTHYT 67

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                + D  L +  +   P+ W                 R         G +   R   
Sbjct: 68  QRDYQHADPVLHYGQACTRPMPW------PGPLPGYDAFWRDAAAFGLCYGWSQTTRDHR 121

Query: 127 HKNGYVIFTSEFLMLANEVII----EAHGACYQVITDF--LELFKKRSSAARNLTERETS 180
              G V        +A + +     E    C  V      L +     S A  L+ RE  
Sbjct: 122 GAMGTVSLVRGGPPIAPDELRRTEPEMIWFCQFVHATMSNLIVSDVMPSGAMRLSLREKQ 181

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L    +G T+ E+A  L LS   V  ++ +A  KLDA N+  A  KA   G I
Sbjct: 182 VLHWTAEGKTAAEVAVILQLSERNVGFHIQNAIDKLDAANKTHATVKAAMLGLI 235


>gi|16129863|ref|NP_416426.1| quorum-sensing transcriptional activator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89108751|ref|AP_002531.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. W3110]
 gi|170081564|ref|YP_001730884.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901125|ref|YP_002926921.1| DNA-binding transcriptional activator [Escherichia coli BW2952]
 gi|253773131|ref|YP_003035962.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|2506570|sp|P07026|SDIA_ECOLI RecName: Full=Regulatory protein SdiA
 gi|1736575|dbj|BAA15736.1| DNA-binding transcriptional activator [Escherichia coli str. K12
           substr. W3110]
 gi|1788224|gb|AAC74983.1| quorum-sensing transcriptional activator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169889399|gb|ACB03106.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860878|gb|ACR62876.1| DNA-binding transcriptional activator [Escherichia coli BW2952]
 gi|253324175|gb|ACT28777.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448967|gb|ACX39389.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|315136553|dbj|BAJ43712.1| DNA-binding transcriptional activator SdiA [Escherichia coli DH1]
          Length = 240

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|109896689|ref|YP_659944.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109698970|gb|ABG38890.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica
           T6c]
          Length = 248

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 10/239 (4%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           E   +  +SSS+  L          I    + L  I     +      I  + NY     
Sbjct: 9   ELLESVDESSSIDALKETCERFCQLIDIPFYLLGVIGQTSSYS---PTIRVISNYPEKWL 65

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSI-QEETVIESSGQLSVRLEGGLLPFAGIAFP 121
           +      E   D  + +      PI W  + + +    + G L          + G++ P
Sbjct: 66  EFYFKESEQQNDPVVKYIFEKQSPIRWDKLVEYQDFSSTKGLLVFEKAAAYGLYNGLSIP 125

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDFLELFKKRSSAARN--LT 175
           +R             +    AN V+  A   C+     +   ++ L    S       LT
Sbjct: 126 IRSTSENIAVFSVAIDERSDANRVLDNAQMFCHTFATHLFERYVLLEISASDETDRRELT 185

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE  CL  A +G T+ EI++ + +S  TV  +LG++  KL A+NR  A+A AI+ G I
Sbjct: 186 KRELECLFWACEGKTAWEISQIINVSERTVLFHLGNSNTKLGAINRQHAVALAIKKGII 244


>gi|237731962|ref|ZP_04562443.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2]
 gi|226907501|gb|EEH93419.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2]
          Length = 240

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L      ++   F  Y +      P  +        Y       
Sbjct: 14  LLRFQEMATAEDVYTELQQQTQHLE---FDFYALCVRHPVPFTRPKTSLHTTYPKAWVAH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L              +     +    Q             G+   + L
Sbjct: 71  YQSENYFAIDPVLK-----PENFSQGHLPWNDTLFRDAQPLWDAARNHGLRKGMTQCLML 125

Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++  +   +      ++EV +       + ++    L      +     ++RE 
Sbjct: 126 PNRALGFLSVSRASIRNSRLASDEVELRMQLLVRESLSVLTRLEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|254465085|ref|ZP_05078496.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium Y4I]
 gi|206685993|gb|EDZ46475.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium Y4I]
          Length = 251

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 80/228 (35%), Gaps = 15/228 (6%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +L+ L   +  +       +     + +A +             Y             + 
Sbjct: 31  TLEGLQLIVEQVCEVFGVDHAMYLWVETAGNH-------YYFGTYSEAWTGRYLDKAYSR 83

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D  +        P+ W+ +      + + +         +   G A P+R    +    
Sbjct: 84  VDPVVVGCYQRFHPVDWKRLDW--NPKPAREFLKDAMEHGVGNQGYAIPIRGPNGQFALF 141

Query: 133 IFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAG 186
             +      A E +      +     +      LEL   R++  A+ L+ RE   L L  
Sbjct: 142 TLSHNCGDAAWEKLVAKYNRDFILVAHYFNRKVLELEPSRTAEHAQPLSPREVDALTLLA 201

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            GY+  ++A+ L +S HT+  Y+ SA  KL A+N   AIA+A+  G I
Sbjct: 202 IGYSRAQVAQTLAISEHTLRVYIESARFKLGAINTTHAIARAVSLGLI 249


>gi|325496964|gb|EGC94823.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii
           ECD227]
          Length = 240

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 13/231 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ +S +++   L L   +++   F  Y++      P  +  +     Y           
Sbjct: 18  QEMASAEDVFQELQLQTQKLE---FDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSYYQQH 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L   N     ++W             Q             G+   + L    
Sbjct: 75  NFLAIDPVLKPENFSQGHLLWDDALFS-----EAQPLWDAARAHGLRRGVTQYLMLSNRA 129

Query: 129 NGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQ 183
            G++        E  +  +E+ ++      + +     L  +   + A   ++RET  L+
Sbjct: 130 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILR 189

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 240


>gi|92109564|ref|YP_571851.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802646|gb|ABE65019.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 231

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 78/227 (34%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            +++ +  E+   L  +             + +        +       +     D  + 
Sbjct: 4   VEQTRTAAEIEDCLLGLAAEFGFTGLFGGIVPTRPAPLAELRSRILFQRFPAQWLDRYSR 63

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
               + D  + H      P  W    +     S+ +L            G   P+     
Sbjct: 64  KGYVFRDPIIQHLFHERTPFTWHEGYKSCPQRSNVRLIQGEAAEFGLRDGYVVPISTIDG 123

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +   + F     + A+  +   + A    +   L           NLT RE  CL  AG+
Sbjct: 124 EIVSLSFGGPGTLPASADLSVLNFAASYALGRHLHRIATWRRVNSNLTAREWDCLLWAGE 183

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T+ EI+  LG+S  TV  ++ +A  KL AV++  AIA AIR   +
Sbjct: 184 GKTNWEISAILGISKSTVTKHIMAARAKLGAVSKAHAIAMAIRTKLL 230


>gi|296114148|ref|ZP_06832803.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295979224|gb|EFG85947.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 237

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 8/227 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + S ++ +L+     I  ++  ++F        +   R  +       Y  D        
Sbjct: 16  QNSENINQLNAEFRSILTKL--KHFVHTA--GLVHKTRVTECYLIDSTYPDDWMQHYIDN 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W S+      + +    ++    +   +G A P+ +    
Sbjct: 72  CYQNIDPVIATARHEFLPYGWGSVGVRNKSQKN---MMQEFQDIGFRSGYAVPLPVSPSM 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGD 187
              V   S    +          A  Q    ++++    +S    +L++RE  CL     
Sbjct: 129 LLLVGMASNDKEINFRDRTILQIAINQYHACYMQITNGGTSKEDCSLSDRERECLLWVAQ 188

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G  + EI+  L +S +TV  +L +   KL A NRIQA+ +AI  G I
Sbjct: 189 GKNTLEISSILNISDNTVKYHLKNIMQKLGAHNRIQAVVQAINLGLI 235


>gi|6572977|gb|AAF17494.1|AF195615_2 transcriptional activator PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 13/226 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++     +    ++   F  +        P  +   C   NY  D             D 
Sbjct: 22  DMQEFTAVTLRVLRELRFDFFAYGMCSVTPFMRPRTCMYGNYPEDWVQRYQAANYAVIDP 81

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H      PI+W +       +                 G+A P      + G +   
Sbjct: 82  TVKHSKVSSAPILWSNELFRGCPD-----LWSEANDSNLCHGLAQPSFNAQGRVGMLSLA 136

Query: 136 SEFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSCLQLAGDG 188
            +   ++ +   EA     +            LE   +  +     + RE   L+   DG
Sbjct: 137 RKDNPISLQE-FEALKLMTKAFAAAIHEKISELESDVRVFNTDVEFSGRECDVLRWTADG 195

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TSEEI   +G+   TVN +  +   K+ A NR+QA++ A+  GYI
Sbjct: 196 KTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|167564011|ref|ZP_02356927.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167571156|ref|ZP_02364030.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 238

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 16/244 (6%)

Query: 1   MSENTLTGKKSSSLQ-ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDL 59
           M+++ L    S+  + ++   L  I  R+    F  +   +  D  + +  +  + NY +
Sbjct: 1   MTQDILDQTSSAKTERDIHDILSRIAARL---GFDYFFYGTLSDMRKPENPVKTVSNYPM 57

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
              +          D  + H    L+P+ W         + +    +    G    AG +
Sbjct: 58  AWQEKYKSSGYIRIDPVVRHCGHRLIPLQWNDGICHCREQRN---FMEDARGHGLVAGAS 114

Query: 120 FPVRLGFHKNGYVIFTS-------EFLMLANEVIIEAHGACYQVITDFLELFKKRSS--A 170
           FPV     +   +   S                           + + +E    R     
Sbjct: 115 FPVHSRHGEVSILSLASRSAGGTTSLSAKHAPATFAQGALAAAFVREGMERISNRPDHEP 174

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  LT RE  CL+    G +S EIA  LG+S + V  ++     K D  +R  A+ KA+ 
Sbjct: 175 SAPLTHRELECLKWIAAGKSSWEIAMILGISENGVLYHVKKLMAKFDVQSRHLAVLKAMA 234

Query: 231 FGYI 234
            G +
Sbjct: 235 SGVV 238


>gi|241206852|ref|YP_002977948.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860742|gb|ACS58409.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 251

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 11/237 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICEL-HNYDLDSGDIPN 66
           ++ S+ + +   L  I        + L + +  +      +     L   +      I  
Sbjct: 14  EECSNPEAVITELEQILRGCGFEYYGLPHHLPQSPLQQNPEPWAAALAGRWPEQWPQIYA 73

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVR 123
                  D  + +      P  W+        ++  +   ++     G     G  FP+ 
Sbjct: 74  AKKYALIDPMVRYLAHAQRPFRWREAMAAFRKDAYHRRMEQMMVDAFGHGLEDGYIFPIH 133

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTER 177
                 G +    + + L+   I        +     L+L       +    A   LT R
Sbjct: 134 GRSGILGSLSLAGKPIELSPVEIALLEAVARKAFWRLLDLKGEAQALETVLPADTPLTRR 193

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L    +G TS EI++ L +S HTV+ Y+     KL A NR  A+A A R G I
Sbjct: 194 EMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQHAVALAFRHGLI 250


>gi|218548547|ref|YP_002382338.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii
           ATCC 35469]
 gi|218356088|emb|CAQ88705.1| DNA-binding transcriptional activator [Escherichia fergusonii ATCC
           35469]
          Length = 251

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 13/231 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ +S +++   L     +++   F  Y++      P  +  +     Y           
Sbjct: 29  QEMASAEDVFQELQFQTQKLE---FDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSYYQQH 85

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L   N     ++W             Q             G+   + L    
Sbjct: 86  NFLAIDPVLKPENFSQGHLLWDDALFS-----EAQPLWDAARAHGLRRGVTQYLMLSNRA 140

Query: 129 NGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQ 183
            G++        E  +  +E+ ++      + +     L  +   + A   ++RET  L+
Sbjct: 141 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILR 200

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 201 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 251


>gi|59940053|gb|AAX12565.1| LuxR-type transcriptional regulator [Aeromonas schubertii]
          Length = 260

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y          ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  ++E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +   A   LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A  G TS EIA  LG++  TVN +L   T K  ++NR QAIA  I  G +
Sbjct: 193 WASRGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAMGISNGIL 243


>gi|220921758|ref|YP_002497059.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219946364|gb|ACL56756.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 244

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 1/233 (0%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           E   +  ++++ + +  +L      +   +  L T+      P  ++    +  Y  +  
Sbjct: 11  ELLQSIHRTATPENVRDQLLKKLAGVGVEHVLLATLRICDAVPCDRRPTVFIGTYPDEWA 70

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
                      D  +           W         +   +  +   G      G   P+
Sbjct: 71  RRYYARNYILHDPVVRGVAERASGFAWTDPDLIASDDREARRVLDEAGEFGLHEGFTLPL 130

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSC 181
                    V F  E L L+  V           +   L L   ++ A +  L+ RE   
Sbjct: 131 LTLEGDTAGVSFVGERLDLSPAVRGMLTLVGTYALGQVLLLANGQAEALSEPLSPRERES 190

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQ A DG +  EI E +G+S H    +L +   KL   +R  A+A  +R G I
Sbjct: 191 LQWAADGKSDWEIGEAMGISEHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 243


>gi|222350143|emb|CAX32456.1| LuxR-type regulator [Rhizobium leguminosarum]
          Length = 251

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 76/237 (32%), Gaps = 11/237 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL--ICELHNYDLDSGDIPN 66
           ++ S+ + +   L  I +      + L          +  +         +      I  
Sbjct: 14  EECSNPEAVVTELEQILHGCGFEYYGLLRHLPQNPVQQNPESWAAALAGRWPEHWPRIYA 73

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFPVR 123
                  D  + +      P  W+           +   +  +    G     G  FP+ 
Sbjct: 74  AKKYALIDPMVRYLGHAQRPFRWREAMAAFHKDAHQRRMEQMMVDAFGHGLEDGYIFPIH 133

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTER 177
                   +    + + L+   I        +     L+L       +    A   LT R
Sbjct: 134 GRNGTLASLSLAGKPIELSPVEIALLEAVARKAFWRLLDLKGEAPALETVLPADTPLTRR 193

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L    +G TS EI++ L +S HTV+ Y+     KL A NR QA+A A R G I
Sbjct: 194 EMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250


>gi|197263477|ref|ZP_03163551.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241732|gb|EDY24352.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 240

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 74/235 (31%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++  +   L  ++    EV +       + ++           +     ++RE 
Sbjct: 126 PNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +  N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNPPNKTQIACYAAATGLI 240


>gi|76057938|emb|CAJ30486.1| PlaR protein [Burkholderia plantarii]
          Length = 240

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 70/230 (30%), Gaps = 12/230 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++ +      H +    K   F        +  P  Q L+     Y              
Sbjct: 13  NTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +    +    IIW                 R         G+A          G 
Sbjct: 73  EIDPTVRDGAASPNMIIWPDADAAEQPS-----LWRDARDFGMSVGVAQSSWAARGVFGL 127

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185
           +        L    I         +      L  +        +A+ +LT+RE   L   
Sbjct: 128 LTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKREREVLSWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234
            +G T+ EI E+L +S  TV  ++ +   KL A N++QA + KAI  G I
Sbjct: 188 SEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVVKAIGMGLI 237


>gi|193066393|ref|ZP_03047441.1| regulatory protein SdiA [Escherichia coli E22]
 gi|192925978|gb|EDV80624.1| regulatory protein SdiA [Escherichia coli E22]
          Length = 240

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVCESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|13474964|ref|NP_106527.1| hypothetical protein mll8752 [Mesorhizobium loti MAFF303099]
 gi|14025713|dbj|BAB52313.1| mll8752 [Mesorhizobium loti MAFF303099]
          Length = 248

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 13/228 (5%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRR------QQLICELHNYDLDSGDIPNIL 68
           ++L   L        A NF    I      P +      Q     + NY  +  +    +
Sbjct: 24  EQLFDLLSAF-----ALNFDCPWIAYGPLAPAQKVLKPAQADSAIMLNYPNEWKERYFKM 78

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +     G+  I W  + ++     + +  +         +G+  P+      
Sbjct: 79  GYDKIDPIIKKSRKGVGAIRWSEVYKDASTTDNERRVLDEAATFGLKSGVTVPLHGPAGS 138

Query: 129 NGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAG 186
              + F         N  +     A         +          ++L+ RE  C+    
Sbjct: 139 FTIMSFAQPWDREFQNRTVTYLQLAALHFHVRVTKGTSSNALKQVQDLSLREKECILWIA 198

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G +S EI + LG+S +TVN +L +A  KLD  +R  A  KA   G +
Sbjct: 199 RGKSSWEIGKILGISGNTVNFHLKNAMRKLDTASRTVAAIKATSLGIV 246


>gi|163758001|ref|ZP_02165089.1| putative LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284290|gb|EDQ34573.1| putative LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 253

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 6/224 (2%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S  +L P+L  +Q +  A  FA+ +             I            +   L++
Sbjct: 35  AGSTADLFPKLVAMQRQCAAAGFAVMSAREQTLLAAGNLDITMKS---PGCDAMAGPLLK 91

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
           +     L H +S   PI++ +  +           ++ E G      + FPV LG   NG
Sbjct: 92  SQMGFLLRHLDSSPRPILYAANSDAVPSPPPALPLMQTEEG---RTDLLFPVSLGAMGNG 148

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
           Y+ F      + +E++I+ H     ++ + L L    +  A  L ERE  CLQL G+G  
Sbjct: 149 YIGFFGVDGAIDSELLIDLHRKSLAMMRETLRLAFGAAPVADKLNEREIECLQLVGNGMK 208

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           SE I E+L LSVHTVNAYLGSAT KLDAVNRIQAIAK+IR G I
Sbjct: 209 SEAIGERLNLSVHTVNAYLGSATTKLDAVNRIQAIAKSIRLGII 252


>gi|144900185|emb|CAM77049.1| regulatory protein, LuxR:Autoinducer-binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 242

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 79/227 (34%), Gaps = 5/227 (2%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++ +   L   L          + A               +   + +Y  +         
Sbjct: 17  RADTAPALMSELKSALVHWGFPHMACGAFGEPERPLDDMSVPAVVVDYPEEWQKYYFEKN 76

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +       +P  W  +++   + +  +   +         GI  PV       
Sbjct: 77  YVTIDPVITRACQAYVPYRWDQLRD---LTNPQKRMFKEATEAGLRHGITVPVHGPNGSI 133

Query: 130 GYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGD 187
                 S    + +   +  A+    QV +  + +    + +A  +LT RE  CL  +  
Sbjct: 134 FVASVASPHTDIDHLRSLSVANVLVTQVYSVLVGMRHPGAPSAPVSLTARERECLIWSAR 193

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G +S +I   L +S +TVN +L +A  KL A  R+ AI KAIR G I
Sbjct: 194 GKSSWDIGVILNISDNTVNFHLKNAMGKLKASTRVLAIVKAIRMGLI 240


>gi|320198610|gb|EFW73210.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           EC4100B]
          Length = 240

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY     + 
Sbjct: 14  LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVNY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|306850701|gb|ADN06870.1| transcriptional activator PhzR [Pseudomonas sp. CMR12a]
          Length = 241

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 72/232 (31%), Gaps = 14/232 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            ++S  +E           +    FA  T +     P  +       NY           
Sbjct: 18  SQASDTEEFKGIAMGALQELDFDFFAYGTCSVT---PFMRPKTSIYSNYPEPWVQRYQAQ 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  + H      PI+W +       +                 G+A P      +
Sbjct: 75  NYALIDPTVKHSKLSSAPILWGNELFRECPQ-----LWSEARDSNLCHGLAQPSFNAQGR 129

Query: 129 NGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSS--AARNLTERETSCL 182
            G +        ++ E                     EL    SS       + RE   L
Sbjct: 130 VGLLSLARRNKAISAEEFEALKPVTKAFAMAAHEKLSELENDDSSLNVQVEFSGRECDVL 189

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +   DG TSEEI   +G+   TVN +  +   K+ A NR+QA++ A+  GYI
Sbjct: 190 RWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVALGYI 241


>gi|325293644|ref|YP_004279508.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325061497|gb|ADY65188.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 238

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 2/220 (0%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD- 74
           +    L  +Q  ++A +++  T+           L   + +                 D 
Sbjct: 19  DRPQWLAALQQVMQAFSYSYVTLLKLPSIRNAYALPIVVESSLPVWVVNAMTRDGELADC 78

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +    S ++P  W    ++    S  ++S  L G +   +G+  PV         + F
Sbjct: 79  PVIKRGASSMMPQYWSLDDKDINCGSLLEVSTLLRG-MGITSGLLVPVNGMDGNRHLMNF 137

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +  +L+   + E        +  +  L +  S     LT+RE   ++    G TS EI
Sbjct: 138 AGDCDVLSQGSLNELCMIALHALEAYDRLCRAGSKLPSPLTKRELDVVRWTAQGKTSVEI 197

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L +S HTVN Y+ +A  KLD VNR Q +AK IR G I
Sbjct: 198 AELLSISEHTVNTYMNNAIRKLDCVNRAQLVAKTIRLGLI 237


>gi|66277268|gb|AAY44565.1| LuxR-like protein [Aeromonas sp. ym2]
          Length = 260

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTDNHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +          LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS +IA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGDIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSRGIL 243


>gi|330811856|ref|YP_004356318.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379964|gb|AEA71314.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 237

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 77/237 (32%), Gaps = 12/237 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  +K S  ++L     L+ N    + F      + L  P +      L+NY      +
Sbjct: 6   DLLLRKLSCEKDLQTAYRLVLNFFNNQGFEYCAFAAYLGSPDKHTSKVNLNNYPYGWDRL 65

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  + H N   LPI+W         +       R         G    V  
Sbjct: 66  YEQNGYASNDPLVAHCNQSSLPILWDETVFAHAPK-----LWRELNRQGLKYGWTQSVHD 120

Query: 125 GFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177
                            +  E      G           L  K+ S A        L+ R
Sbjct: 121 EQGAHCSLFSLARSHCPIDIEEHYANLGYAIFASQRLHALASKKLSDALAIQPKCHLSPR 180

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+ + +G T+ E+   L LS  TVN ++ S   KL+  N+I A+AKA +   I
Sbjct: 181 EIEVLRWSAEGKTASEVGRILCLSERTVNFHVCSCMRKLNVSNKISAVAKAAQIHVI 237


>gi|59940063|gb|AAX12570.1| LuxR-type transcriptional regulator [Aeromonas popoffii]
          Length = 260

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 13/225 (5%)

Query: 22  HLIQNRIKAR----NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             +   I        +  Y     +    ++  +   +                  D  +
Sbjct: 20  DRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHMLACDPII 79

Query: 78  FHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
                  LPI W  ++     ++      + L        GI+FP+     +NG + F +
Sbjct: 80  QLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENGILSFIT 139

Query: 137 EFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                +++++++           +       + +  +       LT+RET CL  A +G 
Sbjct: 140 AE-QASSDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGK 198

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 199 TSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277282|gb|AAY44572.1| LuxR-like protein [Aeromonas popoffii]
          Length = 260

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 9/211 (4%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            +  Y     +    ++  +   +                  D  +       LPI W  
Sbjct: 34  GYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNR 93

Query: 92  IQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           ++     ++      + L        GI+FP+     +NG + F +     +++++++  
Sbjct: 94  LEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENGILSFITAE-QASSDLLLDSS 152

Query: 149 --AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                    +       + +  +       LT+RET CL  A +G TS EIA  LG++  
Sbjct: 153 PILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIACILGITER 212

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 213 TVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|217419193|ref|ZP_03450700.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226200253|ref|ZP_03795798.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|217398497|gb|EEC38512.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225927761|gb|EEH23803.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 236

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 66/221 (29%), Gaps = 9/221 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              + ++        +          FP     I  + NY     +          D  +
Sbjct: 21  QHVISVLTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAV 80

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                  LP+ W +        +S               G +   R      G +  +  
Sbjct: 81  KAALGSDLPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRT 135

Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
              +            H                      +LT RET  L+   DG T+ E
Sbjct: 136 QDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYE 195

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L +S  TVN ++ +   KL + N+IQA+AKA   G +
Sbjct: 196 IALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236


>gi|324113634|gb|EGC07609.1| autoinducer binding domain-containing protein [Escherichia
           fergusonii B253]
          Length = 251

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 13/231 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ +S +++   L L   +++   F  Y++      P  +  +     Y           
Sbjct: 29  QEMASAEDVFQELQLQTQKLE---FDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSYYQQH 85

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L   N     ++W             Q             G+   + L    
Sbjct: 86  NFLAIDPVLKPENFSQGHLLWDDALFS-----EAQPLWDAARAHGLRRGVTQYLMLSNRA 140

Query: 129 NGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQ 183
            G++        E  +  +E+ ++      + +     +  +   + A   ++RET  L+
Sbjct: 141 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARVQHEMVMTPAMRFSKRETEILR 200

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 201 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 251


>gi|126458323|ref|YP_001075604.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134283391|ref|ZP_01770091.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|167723653|ref|ZP_02406889.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
 gi|167819785|ref|ZP_02451465.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167849631|ref|ZP_02475139.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167898230|ref|ZP_02485632.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167906588|ref|ZP_02493793.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|237510070|ref|ZP_04522785.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242312988|ref|ZP_04812005.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254190270|ref|ZP_04896779.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254193498|ref|ZP_04899932.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|254262913|ref|ZP_04953778.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254300529|ref|ZP_04967975.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|126232091|gb|ABN95504.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|134245140|gb|EBA45234.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|156105358|gb|ABU49178.1| BpsR2 [Burkholderia pseudomallei]
 gi|157810414|gb|EDO87584.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|157937947|gb|EDO93617.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650251|gb|EDS82944.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|235002275|gb|EEP51699.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242136227|gb|EES22630.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254213915|gb|EET03300.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
          Length = 236

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 65/221 (29%), Gaps = 9/221 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              + ++        +          FP     I  + NY     +          D  +
Sbjct: 21  QHVISVLTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAV 80

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                   P+ W +        +S               G +   R      G +  +  
Sbjct: 81  KAALGSDRPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRT 135

Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
              +            H                      +LT RET  L+   DG T+ E
Sbjct: 136 QDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYE 195

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L +S  TVN ++ +   KL + N+IQA+AKA   G +
Sbjct: 196 IALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236


>gi|330822376|ref|YP_004362597.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
 gi|327374213|gb|AEA65567.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
          Length = 237

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 16/231 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S  ++   L      +    F   +    + FP          +Y     +       
Sbjct: 15  AKSGHDVFRELSAASREL---GFEHCSFGMRVPFPISNPRYVLQSDYPEAWKERYIRHNY 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  + H  +  LP+ WQ+  +    E                 G   P        G
Sbjct: 72  FAVDPTVQHGLTQSLPLTWQADGQTESTE-----FWEEAAHHGLRYGWCMPACCQNGTIG 126

Query: 131 YVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            V        +    ++           A    +   L L +        LT RE   L+
Sbjct: 127 LVTMARSDEPIEERELLCKEYRMLWLASAVNSAMNAHL-LAQSAPEYEVELTCREREALK 185

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  G T  EI   + +   TV  +L +   KL+A+N+ +A  KA   G +
Sbjct: 186 WSAAGKTYVEIGMIMSVDDRTVKFHLVNTMRKLNAMNKTEAAVKAAMLGLL 236


>gi|283785661|ref|YP_003365526.1| regulatory protein [Citrobacter rodentium ICC168]
 gi|282949115|emb|CBG88722.1| regulatory protein [Citrobacter rodentium ICC168]
          Length = 240

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ +S +++   L      ++   F  Y +      P  +  I    +Y       
Sbjct: 14  LLRFQEMASAKDVYSELQRQAQLLE---FDYYALYVRHPVPFTRPRISFQTSYPEAWVSR 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                 +  D  L          I   +     + +  Q             G+   V L
Sbjct: 71  YQAENYSAIDPVLK-----PENFIQGHLPWSDDLFNDAQTLWDAARAHGLRKGVTQCVML 125

Query: 125 GFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++           +  +EV +       + +     L  +   +     ++RE 
Sbjct: 126 PNRALGFLSVVRASLRSNPIDDDEVELRLQLLVRESLAALSRLEDEMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSYEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGLI 240


>gi|53722204|ref|YP_111189.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|76817623|ref|YP_335301.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei 1710b]
 gi|126444655|ref|YP_001062648.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|52212618|emb|CAH38644.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|76582096|gb|ABA51570.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei 1710b]
 gi|126224146|gb|ABN87651.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
          Length = 234

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 65/221 (29%), Gaps = 9/221 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              + ++        +          FP     I  + NY     +          D  +
Sbjct: 19  QHVISVLTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAV 78

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                   P+ W +        +S               G +   R      G +  +  
Sbjct: 79  KAALGSDRPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRT 133

Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
              +            H                      +LT RET  L+   DG T+ E
Sbjct: 134 QDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYE 193

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L +S  TVN ++ +   KL + N+IQA+AKA   G +
Sbjct: 194 IALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 234


>gi|320641764|gb|EFX11152.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. G5101]
          Length = 240

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W          +  Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQSLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|312967117|ref|ZP_07781335.1| regulatory protein sdiA [Escherichia coli 2362-75]
 gi|312288581|gb|EFR16483.1| regulatory protein sdiA [Escherichia coli 2362-75]
          Length = 228

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 2   LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 58

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 59  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 113

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 114 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 173

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 174 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 228


>gi|84684996|ref|ZP_01012895.1| autoinducer-binding transcriptional regulator LuxR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666728|gb|EAQ13199.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2654]
          Length = 225

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 14/231 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           K + SL+        + +     +   + +NS  +             Y     D    +
Sbjct: 2   KDADSLEAFQAATEQVCDIYGVLHCVYHWVNSDGER-------FGAGTYSSVWVDRYLEM 54

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +F       P  W+ +   T    +  +        L   G + P+     +
Sbjct: 55  DYLRMDPVIFGCFQRFTPANWKDLDWTTKAARA--MLDDALKHGLGNQGYSIPLHGPQGQ 112

Query: 129 NGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                   +         I+          ++     LE       A+ +L+ RE + ++
Sbjct: 113 FALFTLNHQAEDDDWAAFIDINGRDLIVLAHEFNRRALEFEGAEGIASPSLSPRELAAIR 172

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G +  + A +LG+S HT+  Y+ SA  KL A+N   A+A+A+  G I
Sbjct: 173 CLARGLSRAQAAAELGISEHTLRVYIESARHKLGALNTTHAVARALSTGII 223


>gi|188491931|ref|ZP_02999201.1| regulatory protein SdiA [Escherichia coli 53638]
 gi|260855896|ref|YP_003229787.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O26:H11 str. 11368]
 gi|331653323|ref|ZP_08354328.1| regulatory protein SdiA [Escherichia coli M718]
 gi|188487130|gb|EDU62233.1| regulatory protein SdiA [Escherichia coli 53638]
 gi|257754545|dbj|BAI26047.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O26:H11 str. 11368]
 gi|315617861|gb|EFU98459.1| regulatory protein sdiA [Escherichia coli 3431]
 gi|323152751|gb|EFZ39023.1| regulatory protein sdiA [Escherichia coli EPECa14]
 gi|331049421|gb|EGI21493.1| regulatory protein SdiA [Escherichia coli M718]
          Length = 240

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W          +  Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|117624058|ref|YP_852971.1| DNA-binding transcriptional activator SdiA [Escherichia coli APEC
           O1]
 gi|161486200|ref|NP_754222.2| DNA-binding transcriptional activator SdiA [Escherichia coli
           CFT073]
 gi|162138422|ref|YP_541121.2| DNA-binding transcriptional activator SdiA [Escherichia coli UTI89]
 gi|191173269|ref|ZP_03034799.1| regulatory protein SdiA [Escherichia coli F11]
 gi|218558774|ref|YP_002391687.1| DNA-binding transcriptional activator SdiA [Escherichia coli S88]
 gi|218699520|ref|YP_002407149.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI39]
 gi|227885657|ref|ZP_04003462.1| LuxR family protein [Escherichia coli 83972]
 gi|300982244|ref|ZP_07175956.1| autoinducer binding domain protein [Escherichia coli MS 200-1]
 gi|300993973|ref|ZP_07180620.1| autoinducer binding domain protein [Escherichia coli MS 45-1]
 gi|301050730|ref|ZP_07197588.1| autoinducer binding domain protein [Escherichia coli MS 185-1]
 gi|306814260|ref|ZP_07448426.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101]
 gi|331647509|ref|ZP_08348601.1| regulatory protein SdiA [Escherichia coli M605]
 gi|115513182|gb|ABJ01257.1| DNA-binding transcriptional activator [Escherichia coli APEC O1]
 gi|190906386|gb|EDV65995.1| regulatory protein SdiA [Escherichia coli F11]
 gi|218365543|emb|CAR03270.1| DNA-binding transcriptional activator [Escherichia coli S88]
 gi|218369506|emb|CAR17273.1| DNA-binding transcriptional activator [Escherichia coli IAI39]
 gi|222033657|emb|CAP76398.1| Regulatory protein sdiA [Escherichia coli LF82]
 gi|227837230|gb|EEJ47696.1| LuxR family protein [Escherichia coli 83972]
 gi|281178978|dbj|BAI55308.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           SE15]
 gi|294493959|gb|ADE92715.1| regulatory protein SdiA [Escherichia coli IHE3034]
 gi|300297547|gb|EFJ53932.1| autoinducer binding domain protein [Escherichia coli MS 185-1]
 gi|300307314|gb|EFJ61834.1| autoinducer binding domain protein [Escherichia coli MS 200-1]
 gi|300406419|gb|EFJ89957.1| autoinducer binding domain protein [Escherichia coli MS 45-1]
 gi|305852419|gb|EFM52870.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101]
 gi|307553930|gb|ADN46705.1| DNA-binding transcriptional activator [Escherichia coli ABU 83972]
 gi|307626607|gb|ADN70911.1| DNA-binding transcriptional activator SdiA [Escherichia coli UM146]
 gi|312946508|gb|ADR27335.1| DNA-binding transcriptional activator SdiA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286610|gb|EFU46043.1| autoinducer binding domain protein [Escherichia coli MS 110-3]
 gi|315290297|gb|EFU49675.1| autoinducer binding domain protein [Escherichia coli MS 153-1]
 gi|315296532|gb|EFU55829.1| autoinducer binding domain protein [Escherichia coli MS 16-3]
 gi|320194372|gb|EFW69003.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           WV_060327]
 gi|323186796|gb|EFZ72116.1| regulatory protein sdiA [Escherichia coli RN587/1]
 gi|323952411|gb|EGB48284.1| autoinducer binding domain-containing protein [Escherichia coli
           H252]
 gi|323956313|gb|EGB52056.1| autoinducer binding domain-containing protein [Escherichia coli
           H263]
 gi|324007279|gb|EGB76498.1| autoinducer binding domain protein [Escherichia coli MS 57-2]
 gi|324013560|gb|EGB82779.1| autoinducer binding domain protein [Escherichia coli MS 60-1]
 gi|330911724|gb|EGH40234.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional
           activator [Escherichia coli AA86]
 gi|331043233|gb|EGI15371.1| regulatory protein SdiA [Escherichia coli M605]
          Length = 240

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|300935891|ref|ZP_07150848.1| autoinducer binding domain protein [Escherichia coli MS 21-1]
 gi|300458941|gb|EFK22434.1| autoinducer binding domain protein [Escherichia coli MS 21-1]
          Length = 240

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKKFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|86359580|ref|YP_471472.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283682|gb|ABC92745.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 251

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 76/230 (33%), Gaps = 14/230 (6%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICE-----LHNYDLDSGDIPNILIETYG 73
             +  ++  +    F  Y +   L     QQ I          +      I         
Sbjct: 21  AVVAELEQVLHGSGFEYYGLLRHLQQNPAQQNIELRAAPLAGRWPEQWLQIYAAKKYVRI 80

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNG 130
           D  + +      P  W+        ++  +   ++     G     G  FP+       G
Sbjct: 81  DPMVRYLAHAQRPFRWRESMAAFDGDAHQRRMEQMMVDAFGHGLEDGYLFPIHGRNGILG 140

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQL 184
            +    + + L+   I        +     L+L       +        LT RE   L  
Sbjct: 141 SLTLGGKPIDLSPVEIALLEAVARKSFWRLLDLTGEAEALETVLPTETPLTRREMEILHY 200

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G TS EI++ L +S HTV+ Y+     KL A NR QA+A A R G I
Sbjct: 201 LAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGLI 250


>gi|59940059|gb|AAX12568.1| LuxR-type transcriptional regulator [Aeromonas allosaccharophila]
          Length = 260

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 85/231 (36%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TV  +L   T K  ++ R QAIAK +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVIYHLNQVTRKTGSMTRYQAIAKGVSSGIL 243


>gi|301018234|ref|ZP_07182749.1| autoinducer binding domain protein [Escherichia coli MS 69-1]
 gi|300399821|gb|EFJ83359.1| autoinducer binding domain protein [Escherichia coli MS 69-1]
          Length = 240

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++      Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLEYD---YYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIFTSEF----LMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F+        +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRSSVREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|319943177|ref|ZP_08017460.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
 gi|319743719|gb|EFV96123.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
          Length = 236

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 17/234 (7%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           ++G  +S  +        IQ   +A  F   +       P  +     L++Y  D     
Sbjct: 12  VSGDSASERE----VFECIQRASRALGFQHVSYGFQAPLPLSRPKFTWLNDYPGDWQTHY 67

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   D  +        P IW       V E                 G +      
Sbjct: 68  MDAGYPAVDPRIIRARQSSEPFIWNETLFSEVPE-----LWADLQARGIQHGWSQSTLHE 122

Query: 126 FHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
               G +       +   ++      +       ++  +  +    + +S A +LTERE 
Sbjct: 123 PGGIGMLSLCRSTPITEQDLQTRLQHMQWLALLAHKAFSKLIRA--RIASNAPSLTEREL 180

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             L+   DG ++++IAE L LS +TV+ ++ ++  KLD  N+  A+ +A+  G 
Sbjct: 181 EVLRWTADGKSAQDIAEILLLSKNTVDFHIRNSINKLDVPNKTAAVVRAVLLGL 234


>gi|227821018|ref|YP_002824988.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227340017|gb|ACP24235.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 3/221 (1%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            ++   L  I +    R F +  I  +       Q    L ++ ++     +      G 
Sbjct: 27  DDVKRVLDQISDAFGFRGFMVLAIPDSGCHSLAAQ--ALLTSWPMEFLRRYDSAGLIEGS 84

Query: 75  DFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
             +       +P  + + +     ++  G+ ++ +        G+  PV         + 
Sbjct: 85  PVIQRLRRSTIPFTYDAHLLARRRVDGKGEAAISVFEAAGMPRGLYLPVHDAKGGRAAIA 144

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           F  +  +++++ +   +     + +   E+         +L+ RE  CL+ A  G T+ E
Sbjct: 145 FGGDREVVSSDEMQALNFWAGLLYSRLSEVRTHDRRRPGSLSRREIECLRWAAAGKTTVE 204

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +A  + LS +TVN YL  AT KLD+VNR+Q +AKA+R G I
Sbjct: 205 MARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAMRAGLI 245


>gi|190893853|ref|YP_001980395.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190699132|gb|ACE93217.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 251

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 76/230 (33%), Gaps = 14/230 (6%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQ-----QLICELHNYDLDSGDIPNILIETYG 73
             ++ ++  +    F  Y +   L     Q     +       +      I         
Sbjct: 21  AVVNELEQVLHGSGFEYYGLLRHLQQTPAQQNSELRAAPLAGRWPERWLQIYAAKKYIRI 80

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNG 130
           D  + +      P  W+        ++  +   ++     G     G  FP+       G
Sbjct: 81  DPMVRYLTHAQRPFRWRESMAAFNSDAHRRRMEQMMVDAFGHGLEDGYLFPIHGRNGILG 140

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQL 184
            +      + L+   I        +     LEL       +    A   LT RE   L  
Sbjct: 141 SLSLGGRPIELSPVEIALLEAVARKTFWRLLELTGEAEALETVLPAETPLTRREMEILHY 200

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G TS EI++ L +S HTV+ Y+     KL A NR QA+A A R G I
Sbjct: 201 LAEGMTSMEISKMLKISNHTVDWYMNGLQGKLKAKNRQQAVALAFRHGLI 250


>gi|237705872|ref|ZP_04536353.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA]
 gi|26108586|gb|AAN80789.1|AE016762_42 Regulatory protein sdiA [Escherichia coli CFT073]
 gi|91072709|gb|ABE07590.1| regulatory protein SdiA [Escherichia coli UTI89]
 gi|226900629|gb|EEH86888.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA]
          Length = 244

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 18  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 74

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 75  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 130 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 190 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|45453489|gb|AAS65458.1| quorum sensing transcriptional activator [Burkholderia
           thailandensis]
          Length = 239

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 14/238 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L    + + Q+L  ++     R+    F        +  P  + ++     Y     
Sbjct: 7   DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +    +     D  +         I+W                           G+A   
Sbjct: 64  ERYQEMNYLEVDPTVRDGALSSNMIVWPEASANDATT-----LWSDARDHGLAVGVAQSS 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176
                  G +        L +  I    ++A+       +        + +      LT 
Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTH 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L   G+G T+ EI + L +S  TVN ++ +   KL A N++QA+  AI  G I
Sbjct: 179 REREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVNAIAMGLI 236


>gi|291616969|ref|YP_003519711.1| SdiA [Pantoea ananatis LMG 20103]
 gi|291151999|gb|ADD76583.1| SdiA [Pantoea ananatis LMG 20103]
 gi|327393397|dbj|BAK10819.1| cell division activating regulatory protein SdiA [Pantoea ananatis
           AJ13355]
          Length = 240

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 77/238 (32%), Gaps = 13/238 (5%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           +E     +  ++ Q+L   L   Q+ I++  F  +        P  +  +     Y    
Sbjct: 11  TETENHFQALATTQQLKGLL---QDYIQSLGFDYFAFFIQHRVPFTRPRVYLHDTYPKLW 67

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L         + W      +  E       +        +G +  
Sbjct: 68  IKRYKEQNYYAIDPVLQLCLRSGKGVEWTPELFSSAKE-----MWQDACNFGLLSGFSCS 122

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTE 176
                   G +   S+   +     +E     + +    L L ++ +  A      + ++
Sbjct: 123 AMASNRAVGILSIGSKRPFITGSRRVELEVKLHFLAEQSLSLLERLNDEALMVQGNDFSQ 182

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+   +G TS+EI+  L +S HTVN Y  +   + +  N+ Q    A   G I
Sbjct: 183 RELEILRWTAEGKTSQEISLILSISEHTVNFYQKNMKKRFNVSNKTQIACYAAAIGLI 240


>gi|170683439|ref|YP_001743327.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           SMS-3-5]
 gi|256017886|ref|ZP_05431751.1| DNA-binding transcriptional activator SdiA [Shigella sp. D9]
 gi|307314177|ref|ZP_07593787.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|309795974|ref|ZP_07690387.1| autoinducer binding domain protein [Escherichia coli MS 145-7]
 gi|170521157|gb|ACB19335.1| regulatory protein SdiA [Escherichia coli SMS-3-5]
 gi|306906146|gb|EFN36664.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|308120424|gb|EFO57686.1| autoinducer binding domain protein [Escherichia coli MS 145-7]
 gi|315061216|gb|ADT75543.1| DNA-binding transcriptional activator [Escherichia coli W]
 gi|323378207|gb|ADX50475.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|323968333|gb|EGB63740.1| autoinducer binding domain-containing protein [Escherichia coli
           M863]
 gi|327253047|gb|EGE64701.1| regulatory protein sdiA [Escherichia coli STEC_7v]
          Length = 240

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|218695523|ref|YP_002403190.1| DNA-binding transcriptional activator SdiA [Escherichia coli 55989]
 gi|300904802|ref|ZP_07122630.1| autoinducer binding domain protein [Escherichia coli MS 84-1]
 gi|218352255|emb|CAU98011.1| DNA-binding transcriptional activator [Escherichia coli 55989]
 gi|300403316|gb|EFJ86854.1| autoinducer binding domain protein [Escherichia coli MS 84-1]
 gi|315257253|gb|EFU37221.1| autoinducer binding domain protein [Escherichia coli MS 85-1]
          Length = 240

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 82/235 (34%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   +     +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIEFQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F+         L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|157161388|ref|YP_001458706.1| DNA-binding transcriptional activator SdiA [Escherichia coli HS]
 gi|170019746|ref|YP_001724700.1| DNA-binding transcriptional activator SdiA [Escherichia coli ATCC
           8739]
 gi|218689909|ref|YP_002398121.1| DNA-binding transcriptional activator SdiA [Escherichia coli ED1a]
 gi|218705411|ref|YP_002412930.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           UMN026]
 gi|300899169|ref|ZP_07117448.1| autoinducer binding domain protein [Escherichia coli MS 198-1]
 gi|300928947|ref|ZP_07144451.1| autoinducer binding domain protein [Escherichia coli MS 187-1]
 gi|331673434|ref|ZP_08374202.1| regulatory protein SdiA [Escherichia coli TA280]
 gi|331683468|ref|ZP_08384069.1| regulatory protein SdiA [Escherichia coli H299]
 gi|157067068|gb|ABV06323.1| regulatory protein SdiA [Escherichia coli HS]
 gi|169754674|gb|ACA77373.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739]
 gi|218427473|emb|CAR08247.1| DNA-binding transcriptional activator [Escherichia coli ED1a]
 gi|218432508|emb|CAR13401.1| DNA-binding transcriptional activator [Escherichia coli UMN026]
 gi|300357228|gb|EFJ73098.1| autoinducer binding domain protein [Escherichia coli MS 198-1]
 gi|300463101|gb|EFK26594.1| autoinducer binding domain protein [Escherichia coli MS 187-1]
 gi|331069632|gb|EGI41019.1| regulatory protein SdiA [Escherichia coli TA280]
 gi|331079683|gb|EGI50880.1| regulatory protein SdiA [Escherichia coli H299]
          Length = 240

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F+         L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|331663414|ref|ZP_08364324.1| regulatory protein SdiA [Escherichia coli TA143]
 gi|323977903|gb|EGB72989.1| autoinducer binding domain-containing protein [Escherichia coli
           TW10509]
 gi|331059213|gb|EGI31190.1| regulatory protein SdiA [Escherichia coli TA143]
          Length = 240

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|126640216|ref|YP_001083200.1| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978]
          Length = 198

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 9/200 (4%)

Query: 41  ALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES 100
                  +     L+NY                D  + H    L P++W S   +T  E 
Sbjct: 2   QSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEK 61

Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQV 156
                           G A   R      G +        L+ +         +     V
Sbjct: 62  D---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQYTNMYWLTQTV 118

Query: 157 ITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            +   ++      A  NL  T RE   L+   +G TS EIA+ LG++  TVN +L ++  
Sbjct: 119 HSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQ 178

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  N+I A  +A+  G +
Sbjct: 179 KLNVNNKISAAIRAVMLGLL 198


>gi|301029367|ref|ZP_07192464.1| autoinducer binding domain protein [Escherichia coli MS 196-1]
 gi|301645566|ref|ZP_07245495.1| autoinducer binding domain protein [Escherichia coli MS 146-1]
 gi|307138583|ref|ZP_07497939.1| DNA-binding transcriptional activator SdiA [Escherichia coli H736]
 gi|331642538|ref|ZP_08343673.1| regulatory protein SdiA [Escherichia coli H736]
 gi|299877793|gb|EFI86004.1| autoinducer binding domain protein [Escherichia coli MS 196-1]
 gi|301076098|gb|EFK90904.1| autoinducer binding domain protein [Escherichia coli MS 146-1]
 gi|323186308|gb|EFZ71658.1| regulatory protein sdiA [Escherichia coli 1357]
 gi|323948203|gb|EGB44191.1| autoinducer binding domain-containing protein [Escherichia coli
           H120]
 gi|324017952|gb|EGB87171.1| autoinducer binding domain protein [Escherichia coli MS 117-3]
 gi|324118970|gb|EGC12859.1| autoinducer binding domain-containing protein [Escherichia coli
           E1167]
 gi|331039336|gb|EGI11556.1| regulatory protein SdiA [Escherichia coli H736]
          Length = 240

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++      Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLEYD---YYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|194434963|ref|ZP_03067206.1| regulatory protein SdiA [Shigella dysenteriae 1012]
 gi|194416798|gb|EDX32924.1| regulatory protein SdiA [Shigella dysenteriae 1012]
 gi|320178182|gb|EFW53159.1| DNA-binding transcriptional activator SdiA [Shigella boydii ATCC
           9905]
 gi|332095461|gb|EGJ00482.1| regulatory protein sdiA [Shigella dysenteriae 155-74]
          Length = 240

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|74311738|ref|YP_310157.1| DNA-binding transcriptional activator SdiA [Shigella sonnei Ss046]
 gi|82543616|ref|YP_407563.1| DNA-binding transcriptional activator SdiA [Shigella boydii Sb227]
 gi|157156210|ref|YP_001463220.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           E24377A]
 gi|187730097|ref|YP_001879705.1| DNA-binding transcriptional activator SdiA [Shigella boydii CDC
           3083-94]
 gi|193071152|ref|ZP_03052076.1| regulatory protein SdiA [Escherichia coli E110019]
 gi|194439563|ref|ZP_03071636.1| regulatory protein SdiA [Escherichia coli 101-1]
 gi|300822312|ref|ZP_07102453.1| autoinducer binding domain protein [Escherichia coli MS 119-7]
 gi|300917358|ref|ZP_07134027.1| autoinducer binding domain protein [Escherichia coli MS 115-1]
 gi|73855215|gb|AAZ87922.1| transcriptional regulator of ftsQAZ gene cluster [Shigella sonnei
           Ss046]
 gi|81245027|gb|ABB65735.1| transcriptional regulator of ftsQAZ gene cluster [Shigella boydii
           Sb227]
 gi|157078240|gb|ABV17948.1| regulatory protein SdiA [Escherichia coli E24377A]
 gi|187427089|gb|ACD06363.1| regulatory protein SdiA [Shigella boydii CDC 3083-94]
 gi|192955547|gb|EDV86026.1| regulatory protein SdiA [Escherichia coli E110019]
 gi|194421472|gb|EDX37486.1| regulatory protein SdiA [Escherichia coli 101-1]
 gi|300415404|gb|EFJ98714.1| autoinducer binding domain protein [Escherichia coli MS 115-1]
 gi|300525195|gb|EFK46264.1| autoinducer binding domain protein [Escherichia coli MS 119-7]
 gi|309702211|emb|CBJ01527.1| regulatory protein [Escherichia coli ETEC H10407]
 gi|320176080|gb|EFW51148.1| DNA-binding transcriptional activator SdiA [Shigella dysenteriae
           CDC 74-1112]
 gi|323165288|gb|EFZ51076.1| regulatory protein sdiA [Shigella sonnei 53G]
 gi|323174570|gb|EFZ60191.1| regulatory protein sdiA [Escherichia coli LT-68]
 gi|323937191|gb|EGB33471.1| autoinducer binding domain-containing protein [Escherichia coli
           E1520]
 gi|323972721|gb|EGB67922.1| autoinducer binding domain-containing protein [Escherichia coli
           TA007]
 gi|332343642|gb|AEE56976.1| regulatory protein SdiA [Escherichia coli UMNK88]
          Length = 240

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAAHAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|332278913|ref|ZP_08391326.1| regulatory protein sdiA [Shigella sp. D9]
 gi|332101265|gb|EGJ04611.1| regulatory protein sdiA [Shigella sp. D9]
          Length = 244

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++      Y++      P  +  +    NY       
Sbjct: 18  LLRFQRMEAAEEVYHEIELQAQQLEYD---YYSLCVRHPVPFTRPKVAFYTNYPESWVSY 74

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 75  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 130 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 190 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|59940037|gb|AAX12557.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 9/234 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +  + + + S    ++        +  Y     L    +++     +           + 
Sbjct: 11  EHLTMVTDESRLAEVMSRFTVGIGYDDYRFAVILPTSMQRRKEVLFNQCPDSWVQAYTVN 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                D  +    +  LPI W  + E    ++      + L        GI+FP+     
Sbjct: 71  NMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGATG 130

Query: 128 KNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFK---KRSSAARNLTERETS 180
           ++G + F +     ++++++E           +    + + +   +       LT+RET 
Sbjct: 131 ESGILSFIT-RERASSDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALTDRETE 189

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           CL  A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 190 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|293405402|ref|ZP_06649394.1| regulatory protein sdiA [Escherichia coli FVEC1412]
 gi|298381046|ref|ZP_06990645.1| regulatory protein sdiA [Escherichia coli FVEC1302]
 gi|291427610|gb|EFF00637.1| regulatory protein sdiA [Escherichia coli FVEC1412]
 gi|298278488|gb|EFI20002.1| regulatory protein sdiA [Escherichia coli FVEC1302]
          Length = 244

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 18  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 74

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 75  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129

Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F+         L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 130 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 190 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|300951540|ref|ZP_07165374.1| autoinducer binding domain protein [Escherichia coli MS 116-1]
 gi|300956569|ref|ZP_07168849.1| autoinducer binding domain protein [Escherichia coli MS 175-1]
 gi|300316616|gb|EFJ66400.1| autoinducer binding domain protein [Escherichia coli MS 175-1]
 gi|300449215|gb|EFK12835.1| autoinducer binding domain protein [Escherichia coli MS 116-1]
 gi|323940421|gb|EGB36612.1| autoinducer binding domain-containing protein [Escherichia coli
           E482]
 gi|332089650|gb|EGI94752.1| regulatory protein sdiA [Shigella boydii 5216-82]
          Length = 240

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   +     +++      Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIEFQAQQLEYD---YYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F+         L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|191168286|ref|ZP_03030079.1| regulatory protein SdiA [Escherichia coli B7A]
 gi|194429919|ref|ZP_03062429.1| regulatory protein SdiA [Escherichia coli B171]
 gi|218554500|ref|YP_002387413.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI1]
 gi|260844320|ref|YP_003222098.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O103:H2 str. 12009]
 gi|260868508|ref|YP_003234910.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O111:H- str. 11128]
 gi|293410275|ref|ZP_06653851.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300818660|ref|ZP_07098868.1| autoinducer binding domain protein [Escherichia coli MS 107-1]
 gi|300925008|ref|ZP_07140932.1| autoinducer binding domain protein [Escherichia coli MS 182-1]
 gi|301327706|ref|ZP_07220912.1| autoinducer binding domain protein [Escherichia coli MS 78-1]
 gi|331668610|ref|ZP_08369458.1| regulatory protein SdiA [Escherichia coli TA271]
 gi|331677801|ref|ZP_08378476.1| regulatory protein SdiA [Escherichia coli H591]
 gi|190901658|gb|EDV61414.1| regulatory protein SdiA [Escherichia coli B7A]
 gi|194412008|gb|EDX28320.1| regulatory protein SdiA [Escherichia coli B171]
 gi|218361268|emb|CAQ98852.1| DNA-binding transcriptional activator [Escherichia coli IAI1]
 gi|257759467|dbj|BAI30964.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764864|dbj|BAI36359.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O111:H- str. 11128]
 gi|284921829|emb|CBG34902.1| regulatory protein [Escherichia coli 042]
 gi|291470743|gb|EFF13227.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300418843|gb|EFK02154.1| autoinducer binding domain protein [Escherichia coli MS 182-1]
 gi|300528832|gb|EFK49894.1| autoinducer binding domain protein [Escherichia coli MS 107-1]
 gi|300845750|gb|EFK73510.1| autoinducer binding domain protein [Escherichia coli MS 78-1]
 gi|323158600|gb|EFZ44614.1| regulatory protein sdiA [Escherichia coli E128010]
 gi|323180833|gb|EFZ66373.1| regulatory protein sdiA [Escherichia coli 1180]
 gi|331063804|gb|EGI35715.1| regulatory protein SdiA [Escherichia coli TA271]
 gi|331074261|gb|EGI45581.1| regulatory protein SdiA [Escherichia coli H591]
          Length = 240

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|215487121|ref|YP_002329552.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215265193|emb|CAS09582.1| DNA-binding transcriptional activator [Escherichia coli O127:H6
           str. E2348/69]
          Length = 240

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +    +  N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTSEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|157145292|ref|YP_001452611.1| DNA-binding transcriptional activator SdiA [Citrobacter koseri ATCC
           BAA-895]
 gi|157082497|gb|ABV12175.1| hypothetical protein CKO_01029 [Citrobacter koseri ATCC BAA-895]
          Length = 240

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 13/231 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ ++ +++   L     +++   +  Y +      P  +  I     Y           
Sbjct: 18  QEMATAEDVYTELQHQTQQLE---YDYYALCVRHPVPFTRPKISVHTTYPQAWVAHYQSE 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L              +     + S  Q             G    + L    
Sbjct: 75  NYFSIDPVLK-----PENFRQGHLAWNDALFSEAQSLWDAARAHGLRRGATQCLMLPNRA 129

Query: 129 NGYVIFTS---EFLMLANEVI-IEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQ 183
            G++  +         A++ I +       + ++    L  +   +     ++RE   L+
Sbjct: 130 LGFLSVSRASARHAPFAHDEIELRLQLLVRESLSALTRLEDEMVMTPEMRFSKREKEILK 189

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 190 WTAEGKTSSEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|312115398|ref|YP_004012994.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220527|gb|ADP71895.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 251

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 76/235 (32%), Gaps = 8/235 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
               + S +E+S              +    I                 NY  D  +   
Sbjct: 12  DANAAKSSKEVSALFGKALAVFGYDRYCYSLITDHPSLGLNAGHGLVC-NYPDDWMEHYR 70

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
           +      D    +  S   P  W S+  +          +          GIA PV    
Sbjct: 71  LNQYEKKDPVPQYGISASRPFTWASVVAQRKWHPDQMKVMHEAEEARLCDGIAVPVCGVN 130

Query: 127 HKNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKRSSAARNL-----TERET 179
            +       S    ++ +  ++ +      Q    F EL K  +    NL     TERE 
Sbjct: 131 GELAGFGIASSHGGVSPDRTLLHKVQALAIQFHLAFTELEKIETPLTENLAEVYLTEREK 190

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +  A +G +   IAE LG+S  TV  ++ +   KL+A  R  A  KAIR G I
Sbjct: 191 EIMSWAAEGKSDSVIAEILGVSHSTVRFHMNNVFKKLNANERTLATVKAIRHGLI 245


>gi|59940083|gb|AAX12580.1| LuxR-type transcriptional regulator [Aeromonas schubertii]
          Length = 260

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +    +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSAIL 243


>gi|209919338|ref|YP_002293422.1| DNA-binding transcriptional activator SdiA [Escherichia coli SE11]
 gi|293446298|ref|ZP_06662720.1| regulatory protein sdiA [Escherichia coli B088]
 gi|209912597|dbj|BAG77671.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           SE11]
 gi|291323128|gb|EFE62556.1| regulatory protein sdiA [Escherichia coli B088]
          Length = 244

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 18  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 74

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 75  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 130 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 190 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|90422223|ref|YP_530593.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104237|gb|ABD86274.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB18]
          Length = 245

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 70/226 (30%), Gaps = 2/226 (0%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + ++S + L   +         R+F +            ++    L ++           
Sbjct: 20  QTTTSPRALIDAVRDAAAAYGYRSFVIAAAPKLACNAFDKR--VLLRHWPEAWFGQYLQD 77

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D    H         W     +   + +  +            G   P+      
Sbjct: 78  NYQDHDPIAAHARQQTRAFCWSDAPWDRSDKKTAAVMDCAAHDYDMRRGFCVPIFGMRGY 137

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              + F    +  +              +   + + +  +     L+ RE   +  A  G
Sbjct: 138 EAAISFGGPEIDASPAATAAMELIAIYAMNQLMTMREPPARRQTTLSPREREVVAWAAVG 197

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+ + A  L +S  TVN ++ SA  KLDA  + QA+ ++IR G I
Sbjct: 198 KTAWDTARILAISTDTVNKHMASAMRKLDACTKTQAVVESIRRGEI 243


>gi|116254365|ref|YP_770203.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259013|emb|CAK10122.1| LuxR-family regulator [Rhizobium leguminosarum bv. viciae 3841]
          Length = 251

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 75/231 (32%), Gaps = 14/231 (6%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLIC-----ELHNYDLDSGDIPNILIETY 72
              +  ++  +    F  Y +   L     QQ            +      I        
Sbjct: 20  EAVVTELEQILHGCGFEYYGLPRHLPQTPMQQNPEPWAAALAGRWPEQWPHIYTAKKYAL 79

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKN 129
            D  + +      P  W+        ++  +   ++     G     G  FP+       
Sbjct: 80  IDPMVRYLAHAQRPFRWREAMAAFRKDAYHRRMEQMMVDAFGHGLEDGYIFPIHGRNGIL 139

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQ 183
             +    + + L+   I        +     L+L       +    A   LT RE   L 
Sbjct: 140 ASLSLAGKPIELSPVEIALLEAVARKAFWRLLDLKGEAQALETVLPADTPLTRREMEILH 199

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS EI++ L +S HTV+ Y+     KL A NR QA+A A R G I
Sbjct: 200 YLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250


>gi|167839810|ref|ZP_02466494.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 236

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 9/219 (4%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            + ++        +          FP     I  + NY     +          D  +  
Sbjct: 23  VISVLTRAAATLGYEYAAYGMRRPFPISNPQILMVSNYPARWQERYIEARFANVDGAVKA 82

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                 P+ W +        +S               G +   R      G +  +    
Sbjct: 83  ALGSDRPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLSLSRTQG 137

Query: 140 MLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            +            H                      +LT RET  L+   DG T+ EIA
Sbjct: 138 PIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIA 197

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L +S  TVN ++ +   KL + N+IQA+AKA   G +
Sbjct: 198 LILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236


>gi|293415226|ref|ZP_06657869.1| regulatory protein sdiA [Escherichia coli B185]
 gi|291432874|gb|EFF05853.1| regulatory protein sdiA [Escherichia coli B185]
          Length = 244

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L    ++   +  Y++      P  +  +    NY       
Sbjct: 18  LLRFQRMEAAEEVYHEIELQAQLLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 74

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 75  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 129

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 130 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 189

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 190 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|110681100|ref|YP_684107.1| LuxR family transcription regulator [Roseobacter denitrificans OCh
           114]
 gi|109457216|gb|ABG33421.1| transcription regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 4/204 (1%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
            + ++ ++    P  + L      Y                D      +    P  W   
Sbjct: 39  VSYHSDDAQ--LPGSKPLGIVSDGYPEGWVCEYLQSELFRVDPIPQLASILSRPFRWSEA 96

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAH 150
            +   +   G+  ++         G+A  V     +N YV   F  +   L  + I E  
Sbjct: 97  PKLMRLSPEGERYMQTLAQSGLGDGVAMQVYGPNMRNAYVGLGFGKQDPDLTADEIFELQ 156

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A       + EL + R   A +L+ RE   LQ    G ++  IAE LG+S HTV+    
Sbjct: 157 CAAQIAHIRYCELTEFRQRVAESLSPREVEILQWIARGKSNSVIAEILGISRHTVDTITR 216

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KLD  +R  A  + +  G +
Sbjct: 217 RIFEKLDVNDRTTAAIRGLGSGLV 240


>gi|238023440|ref|YP_002907673.1| DNA-binding HTH domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237880493|gb|ACR32822.1| DNA-binding HTH domain-containing protein [Burkholderia glumae
           BGR1]
          Length = 235

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 14/230 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           S S + +  +L    +++    F           P   + +    NY     +    +  
Sbjct: 14  SDSSRVVFDKLVGYASQL---GFDYCCYGFRSPLPVGGESVKVFDNYPNGWMEHYRHMGY 70

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +    +    I W         ES      +         GIA P        G
Sbjct: 71  IDVDPTVEKAMTCSQTICWPGFD-----ESKQSAFWQDARDHGLKVGIAQPSWSARGAFG 125

Query: 131 YVIFTSEFLMLANEVI----IEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQL 184
            +        +    +    ++       V +             AA +LTERE   L+ 
Sbjct: 126 LLSLARGEGEIDGHELKRLSLQLSWITNAVHSAMTAHVFDSLGLGAAISLTERERQVLRW 185

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G  + +I+EKL +SV TVN ++G    K  A N++QA A+A+    +
Sbjct: 186 TVEGLNAFDISEKLNISVSTVNWHIGKVLAKFGATNKVQAAARAVALNLL 235


>gi|167839488|ref|ZP_02466172.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           thailandensis MSMB43]
          Length = 239

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 14/238 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L    + + Q+L  ++     R+    F        +  P  + ++     Y     
Sbjct: 7   DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISRPVVAIFDTYPNGWM 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +    +     D  +         I+W                           G+A   
Sbjct: 64  ERYQEMNYLEVDPTVREGALSSNMIVWPEASACDATS-----LWSDARDHGLAVGVAQSS 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTE 176
                  G +        L    I    ++ +       +        + +      LT 
Sbjct: 119 WASRGVFGLLTIARHTDRLTIAEINHLTLQTNWLANMSHSLMSRFLVPKLAPESGVALTH 178

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L   G+G T+ EI + LG+S  TVN ++ +   KL A N++QA+ KAI  G +
Sbjct: 179 REREVLCWTGEGKTACEIGQILGISERTVNFHVNNVLDKLGATNKVQAVVKAIAMGLV 236


>gi|170752129|ref|YP_001758389.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658651|gb|ACB27706.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 242

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 6/230 (2%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIP 65
             +++++  E++  L    +R          I      P+R+     L            
Sbjct: 16  DLERAATPDEIARLLVEAFSRYGVSYIM-AGIVPDPGLPKRRHAGFVLASTMPEGWARRY 74

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   D  +    +   P  W ++        +    +   G     AGI  P    
Sbjct: 75  VTQGYALHDPTVRRLCTTATPFDWNAVL---PDTPTAGRVMNEAGEFGIRAGITVPFVTL 131

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQL 184
             + G +  + E + +     +  +      +   L +  + ++ A   L+ RE   LQ 
Sbjct: 132 DGEPGGISVSGERIEIDPAERVAVNLVATYAVGQLLLMNSRPAAPAPARLSPREREALQW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EI   +G++   V+ +L SA  KLD VNR   +A+A+R G I
Sbjct: 192 AAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGLI 241


>gi|311279135|ref|YP_003941366.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308748330|gb|ADO48082.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 240

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + +SS +E+   L      ++   +A   +      P  +  I     Y           
Sbjct: 18  QLASSSEEIYSILQQQTEMLEYDWYA---LCVRHPVPFTRPKIALQTTYPRAWIAQYQAE 74

Query: 69  IETYGDDFLF--HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                D  L   ++  G LP  W     +   E                 G+   + L  
Sbjct: 75  NYFTIDPVLKPENYRHGYLP--WTDRLFQDAQE-----FWDAARDHGLRKGVTQCLILPN 127

Query: 127 HKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSC 181
              G++  + E +        E  +          T  L L      +     ++RE   
Sbjct: 128 RALGFLSVSREGIQKDPLAEDETQMRLQMLAEFSTTALLRLDDSAILTPEMKFSKRELEI 187

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+   +G TS EI+  L +S +TVN +  +   K +A N+ Q    A+  G I
Sbjct: 188 LKWTAEGKTSAEISIILSISENTVNFHQKNMQKKFNAPNKTQIACYAVATGLI 240


>gi|312973873|ref|ZP_07788045.1| regulatory protein sdiA [Escherichia coli 1827-70]
 gi|310332468|gb|EFP99703.1| regulatory protein sdiA [Escherichia coli 1827-70]
          Length = 221

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 13/229 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
             + +E+   +     +++   +  Y++      P  +  +    NY             
Sbjct: 1   MEAAEEVYHEIEFQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNF 57

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  L   N     ++W             Q             G+   + L     G
Sbjct: 58  LAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLMLPNRALG 112

Query: 131 YVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLA 185
           ++ F+         L++E+ ++      + +   + L  +   +   N ++RE   L+  
Sbjct: 113 FLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWT 172

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 173 AEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 221


>gi|15964581|ref|NP_384934.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309327|ref|ZP_07588990.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307320063|ref|ZP_07599484.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15073759|emb|CAC45400.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894278|gb|EFN25043.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306900196|gb|EFN30814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 3/226 (1%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
              S  ++   L  +      R F +  I  +       Q    +  + +D     +   
Sbjct: 22  AIDSEDDVRRALGRVSEGFGFRGFMVLAIPESGSHSLTAQ--ALMTTWPMDFLRRYDSAR 79

Query: 70  ETYGDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              G   +       +P  + + +     ++  G+ ++ +        G+  PV      
Sbjct: 80  LIDGSPVIQRLRRSTIPFTYDAHLLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGH 139

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              + F  +   ++++ +   +     + +   E+  +      +L+ RE  CL+ A  G
Sbjct: 140 RAAIAFGGDRSAVSDDEMQALNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAG 199

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+ E+A  + LS +TVN YL  AT KLD+VNR+Q +AKAIR G I
Sbjct: 200 KTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245


>gi|167828172|ref|ZP_02459643.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
          Length = 210

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 64/215 (29%), Gaps = 9/215 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +        +          FP     I  + NY     +          D  +      
Sbjct: 1   MTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGS 60

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
            LP+ W +        +S               G +   R      G +  +     +  
Sbjct: 61  DLPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDT 115

Query: 144 EVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                     H                      +LT RET  L+   DG T+ EIA  L 
Sbjct: 116 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 175

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TVN ++ +   KL + N+IQA+AKA   G +
Sbjct: 176 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 210


>gi|53717016|ref|YP_106048.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           ATCC 23344]
 gi|67643368|ref|ZP_00442115.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|124382942|ref|YP_001025964.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126445405|ref|YP_001061548.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|126446264|ref|YP_001078053.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10247]
 gi|126457742|ref|YP_001074487.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134284195|ref|ZP_01770887.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|167003599|ref|ZP_02269385.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|167741352|ref|ZP_02414126.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 14]
 gi|167818528|ref|ZP_02450208.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167826910|ref|ZP_02458381.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
 gi|167848430|ref|ZP_02473938.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167896980|ref|ZP_02484382.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167905359|ref|ZP_02492564.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167921599|ref|ZP_02508690.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
 gi|217423225|ref|ZP_03454727.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226194550|ref|ZP_03790147.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237507990|ref|ZP_04520705.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313995|ref|ZP_04813012.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254176241|ref|ZP_04882899.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|254189375|ref|ZP_04895885.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254195237|ref|ZP_04901665.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|254200901|ref|ZP_04907266.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|254204867|ref|ZP_04911220.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|254262915|ref|ZP_04953780.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254299430|ref|ZP_04966879.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|254358982|ref|ZP_04975254.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|52422986|gb|AAU46556.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 23344]
 gi|126224896|gb|ABN88401.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
 gi|126231510|gb|ABN94923.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|126239118|gb|ABO02230.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10247]
 gi|134244398|gb|EBA44504.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|147748513|gb|EDK55588.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|147754453|gb|EDK61517.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|148028169|gb|EDK86129.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|156105362|gb|ABU49180.1| BpsR4 [Burkholderia pseudomallei]
 gi|157809517|gb|EDO86687.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|157937053|gb|EDO92723.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160697283|gb|EDP87253.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|169651984|gb|EDS84677.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|217394133|gb|EEC34153.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225933378|gb|EEH29368.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|235000195|gb|EEP49619.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238524705|gb|EEP88137.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|242137234|gb|EES23637.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|243060902|gb|EES43088.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|254213917|gb|EET03302.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|261827048|gb|ABM99276.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
          Length = 238

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            ++  +NFA                 C L  +  +     +       D  + H     +
Sbjct: 31  RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 85

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANE 144
           P+IW          S  +L            G++ PV         +   ++        
Sbjct: 86  PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAS 142

Query: 145 VIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            I+             +  + + L+   +R  +   LT RE   LQ AG G T+ EI++ 
Sbjct: 143 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 201

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+S  TV  +L +A  K+ A NR QA+  A   G I
Sbjct: 202 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|59940051|gb|AAX12564.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y          ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  ++E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +   A   LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR  AIA  +  G +
Sbjct: 193 WASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIANGVSSGML 243


>gi|167742620|ref|ZP_02415394.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 14]
 gi|167914947|ref|ZP_02502038.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 112]
 gi|167922782|ref|ZP_02509873.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
          Length = 210

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 63/215 (29%), Gaps = 9/215 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +        +          FP     I  + NY     +          D  +      
Sbjct: 1   MTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGS 60

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
             P+ W +        +S               G +   R      G +  +     +  
Sbjct: 61  DRPVTWSA-----PANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDT 115

Query: 144 EVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                     H                      +LT RET  L+   DG T+ EIA  L 
Sbjct: 116 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 175

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TVN ++ +   KL + N+IQA+AKA   G +
Sbjct: 176 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 210


>gi|150395666|ref|YP_001326133.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150027181|gb|ABR59298.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 286

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 82/230 (35%), Gaps = 3/230 (1%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPN 66
             + + L+     +  ++   +   F  + I S       +      + N   +  +  +
Sbjct: 56  ASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMPAELLNKYD 115

Query: 67  ILIETYGDDFLFHFNSGLLPI--IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
            L        +        P   + +  ++E     +      +           FPV  
Sbjct: 116 SLSMLRFSTGVRRLRETTTPFQILLEDWEKEGGKPDAAADYFAMLRENGLLQANYFPVHD 175

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                G VI       L     +E       V     E+     +    L+ERE  CL  
Sbjct: 176 AEGGRGAVILMGPEAGLPMTAAMELQMIAIHVYNRLAEIGSVWKNTNTVLSEREIQCLNW 235

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G TS EIA  LGLS HTVN YL   T KLDAVNR QA+ KA++ GYI
Sbjct: 236 TAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 285


>gi|167564970|ref|ZP_02357886.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167572172|ref|ZP_02365046.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 238

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 77/217 (35%), Gaps = 17/217 (7%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            ++  +NFA                 C L  +  +     +       D  + H     +
Sbjct: 31  RQLGFKNFAY-----RHQIAGMSSSRCTLDGFPAEWRLRYDSADYLSIDPVVQHCRCRTV 85

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-------- 137
           P+IW      T      ++            G++ PV         +   ++        
Sbjct: 86  PLIWSDDLYTTG---RAKIMRDEAKSYGLVYGLSCPVHDRGGTISMLSMATDAPFERDTI 142

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            ++    +        +  + + L+   +R  +   LT RE   LQ AG G T+ EI++ 
Sbjct: 143 DVLRLLSLSQLLASFVHAAMQELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 201

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+S  TV  +L +A  K+ A NR QA+  A   G I
Sbjct: 202 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|167913657|ref|ZP_02500748.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 112]
          Length = 238

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            ++  +NFA                 C L  +  +     +       D  + H     +
Sbjct: 31  RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 85

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANE 144
           P+IW          S  +L            G++ PV         +   ++        
Sbjct: 86  PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAS 142

Query: 145 VIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            I+             +  + + L+   +R  +   LT RE   LQ AG G T+ EI++ 
Sbjct: 143 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 201

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+S  TV  +L +A  K+ A NR QA+  A   G I
Sbjct: 202 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|323961965|gb|EGB57564.1| autoinducer binding domain-containing protein [Escherichia coli
           H489]
          Length = 240

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L         ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPEYFNQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|150395665|ref|YP_001326132.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150027180|gb|ABR59297.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 3/221 (1%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            ++   L  +      R F +  I  +       Q    +  + +D     +      G 
Sbjct: 27  DDVRGALGRVSEGFGFRGFMVLAIPDSGSHSLTAQ--ALMTTWPMDFLRRYDSARLIDGS 84

Query: 75  DFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
             +       +P  + +       ++  G+ ++ +        G+  PV         V 
Sbjct: 85  PVIQRLRRSTIPFTYDAHQLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGHRAAVA 144

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           F  +   ++ + + E +     + +   E+  +      +L+ RE  CL+ A  G T+ E
Sbjct: 145 FGGDRSAVSGDELQELNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAGKTTVE 204

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +A  + LS +TVN YL  AT KLD+VNR+Q +AKAIR G I
Sbjct: 205 MARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245


>gi|149193353|gb|ABR21211.1| PhzR [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 241

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 13/226 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++     +    ++   F  +        P  +       NY  D             D 
Sbjct: 22  DMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H      PI+W +       +                 G+A P      + G +   
Sbjct: 82  TVKHSKVSSSPILWSNELFRGCPD-----LWSEANDSNLRHGLAQPSFNTQGRVGVLSLA 136

Query: 136 SEFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSCLQLAGDG 188
            +   ++ +   EA     +            LE   +  +     + RE   L+   DG
Sbjct: 137 RKDNPISLQE-FEALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADG 195

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TSEEI   +G+   TVN +  +   K+ A NR+QA++ A+  GYI
Sbjct: 196 KTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|76819232|ref|YP_337020.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1710b]
 gi|76583705|gb|ABA53179.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710b]
          Length = 394

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            ++  +NFA                 C L  +  +     +       D  + H     +
Sbjct: 187 RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 241

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANE 144
           P+IW          S  +L            G++ PV         +   ++        
Sbjct: 242 PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAS 298

Query: 145 VIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            I+             +  + + L+   +R  +   LT RE   LQ AG G T+ EI++ 
Sbjct: 299 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 357

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+S  TV  +L +A  K+ A NR QA+  A   G I
Sbjct: 358 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 394


>gi|167577870|ref|ZP_02370744.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
          Length = 236

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 62/215 (28%), Gaps = 9/215 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +        +          FP     I  + NY     +          D  +      
Sbjct: 27  LTRAAATLGYEYAAYGMRRPFPISNPQILMVSNYPDRWQERYIEARFANVDSAVKAALGS 86

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
             P+ W +    +                    G +   R      G +  +     +  
Sbjct: 87  DRPVTWSASTNASKSA-----FWAEALSFGIAHGWSSASRGADGTIGVLSLSRRQDAIDT 141

Query: 144 EVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                     H                      +LT RET  L+   DG T+ EIA  L 
Sbjct: 142 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 201

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TVN ++ +   KL + N+IQA+AKA   G +
Sbjct: 202 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236


>gi|53721347|ref|YP_110332.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52211761|emb|CAH37760.1| putative LuxR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
          Length = 234

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            ++  +NFA                 C L  +  +     +       D  + H     +
Sbjct: 27  RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 81

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANE 144
           P+IW          S  +L            G++ PV         +   ++        
Sbjct: 82  PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAS 138

Query: 145 VIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            I+             +  + + L+   +R  +   LT RE   LQ AG G T+ EI++ 
Sbjct: 139 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 197

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+S  TV  +L +A  K+ A NR QA+  A   G I
Sbjct: 198 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 234


>gi|83716885|ref|YP_439427.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|257142551|ref|ZP_05590813.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650710|gb|ABC34774.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 234

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 62/215 (28%), Gaps = 9/215 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +        +          FP     I  + NY     +          D  +      
Sbjct: 25  LTRAAATLGYEYAAYGMRRPFPISNPQILMVSNYPDRWQERYIEARFANVDSAVKAALGS 84

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
             P+ W +    +                    G +   R      G +  +     +  
Sbjct: 85  DRPVTWSASTNASKSA-----FWAEALSFGIAHGWSSASRGADGTIGVLSLSRRQDAIDT 139

Query: 144 EVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                     H                      +LT RET  L+   DG T+ EIA  L 
Sbjct: 140 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 199

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TVN ++ +   KL + N+IQA+AKA   G +
Sbjct: 200 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 234


>gi|312963163|ref|ZP_07777648.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311282674|gb|EFQ61270.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 240

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 11/212 (5%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            +++    ++ N   +  F   +   +      Q++I E  NY  +   +         D
Sbjct: 16  DQITSVFEMVINETYSLGFQFCSFKMSTQQLANQKIIFEKSNYPNEWSHLYKQAKFADVD 75

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             + H    +LP +W+    +            L        G   P+         +  
Sbjct: 76  PVVAHCQRSVLPFVWKETAFQGTP-----HLWTLAQSCGVHLGWTQPLHGPRGVFSMLTL 130

Query: 135 TSEFLMLANEVIIE----AHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDG 188
           +     ++ E + E    A   C+ + T        +  +    NLT RE   L+ +  G
Sbjct: 131 SRSKREISPEELYEKAGNALWLCHAMHTVVAHKYANEPDAVPCNNLTPRELEVLRWSALG 190

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            T+ EIA+ L LS  TV  +  S+  KL   N
Sbjct: 191 KTAGEIAKILCLSERTVGFHNCSSMRKLGVNN 222


>gi|329907385|ref|ZP_08274651.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546980|gb|EGF31877.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 267

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 75/225 (33%), Gaps = 11/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++      I  R  A  F   +    +  P     I   +NYD +  ++         D 
Sbjct: 43  DIDVLFAHIVERTAALGFDFASFGMQMPLPLNNPKIVTRNNYDPEWWNVYLKNNYFQIDP 102

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H  +     +W         +                 G     R        + F+
Sbjct: 103 VVIHVRTSDEAAVWSDNFFSAQPK-----FWEHAQSFGLRYGWTKATRSSVGTMSQLSFS 157

Query: 136 SEFLMLANEVII----EAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGY 189
                L+ + ++                  E F  ++   +   L++RE   ++   DG 
Sbjct: 158 RRENPLSEQELLLKESAMIDLADLAHLHMTECFVLEQFPESKTELSQRERDVIRWCADGK 217

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+ EIA  L +S  +VN ++ +   KLDA N+  A+ KA  FG +
Sbjct: 218 TNAEIAMILNISTSSVNFHVLNFIKKLDASNKTHAVMKAASFGLL 262


>gi|222085036|ref|YP_002543565.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722484|gb|ACM25640.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 83/219 (37%), Gaps = 2/219 (0%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  + +  + R F +  + S   F  +      ++N+  +   + +         
Sbjct: 28  DVFRFMKRVTDAYRCRAFMVVNLPSLTSFELQ--SNSVINNWPAELLTVYDQEGLLRNST 85

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
                    LP ++ +       +S  QL   L         I  P        G VI +
Sbjct: 86  VSRRLRVSTLPFVYDTAANTNRDDSKIQLRASLFERFRMARSICLPTHDASGIRGAVILS 145

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            +      E   +       V     E+          LT+RE  CL     G TS EIA
Sbjct: 146 GDREAFTAEETKDLCYIAIHVFDRLAEIRNLDVRIVDTLTDRELDCLNWTAAGKTSAEIA 205

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E L LS HTVN YL  AT KLD VNR QA+AKA+R G I
Sbjct: 206 EILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRVGLI 244


>gi|83956361|ref|ZP_00964786.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter
           sp. NAS-14.1]
 gi|83839409|gb|EAP78592.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter
           sp. NAS-14.1]
          Length = 269

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 88/240 (36%), Gaps = 11/240 (4%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +SE+  +  KS+   +L   L+ +      +N   ++ +              +  Y   
Sbjct: 33  LSEDFSSRAKSTPELDLETTLNDLSTLYGLKNITYFSASIPYANDDE---HILITTYSTT 89

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +    L     D  L   +  LLP+ W  +   T  E+S       +   +   G+  
Sbjct: 90  WVEHYFSLKYQDVDPVLHAGSRSLLPVDWGHL--STTGETSRNFFGEAKEYGIGETGLTI 147

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARN-L 174
           PVR    +   +   S+      E+     I +     + +          +       L
Sbjct: 148 PVRGMLGEEAMISLNSDLRARDWELFCREMISDFTYFAHLLHDSVTRSRIHQHETDHPQL 207

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L+ A  G T+ E    LGL+  TV+ YLG+A  KL    + QA+A A++   I
Sbjct: 208 TKREAQVLRWAARGKTAWETGIILGLTEKTVSFYLGNACAKLKVATKTQAVAFAVKERLI 267


>gi|167578890|ref|ZP_02371764.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167616988|ref|ZP_02385619.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257140903|ref|ZP_05589165.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 238

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            ++  +NFA                 C L  +  +     +       D  + H     +
Sbjct: 31  RQLGFKNFAY-----RHQISGAASSRCMLDGFPTEWRLRYDAADYLSIDPVVQHCRCRTV 85

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL------ 139
           P+IW      T      +L            G++ PV         +   ++        
Sbjct: 86  PLIWHDELYTTG---RAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAN 142

Query: 140 --MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +    +        +  + + L+   +R  +   LT RE   LQ AG G T+ EI++ 
Sbjct: 143 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 201

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+S  TV  +L +A  K+ A NR QA+  A   G I
Sbjct: 202 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|90023140|ref|YP_528967.1| LuxR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952740|gb|ABD82755.1| transcriptional regulator, LuxR family [Saccharophagus degradans
           2-40]
          Length = 247

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 88/231 (38%), Gaps = 8/231 (3%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +++  + L          +    +    I+SA         I  + NY  +         
Sbjct: 15  EATDEETLKELCLKFCELVGFEFYIFGIISSASSL--SSPTISTISNYPDEWFKNYFEEG 72

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
               D  + +       I W+ + + E  +++ G+  +          G++ P++    +
Sbjct: 73  MQRHDPVVRYCMQNTSAIRWRQLMDLEHYVDAIGEKIMIRASESGLCDGLSIPIKAPSGE 132

Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARN-LTERETSCLQ 183
                  S      N+ I      A     QV   +  L  K +   +  LT RE   L 
Sbjct: 133 IAIFSLASNREEGLNQRINACLPFAQSFGTQVFECYSALMLKLAQNKQTHLTAREKESLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G T+ EI++ L +S  TV  +L SAT KL AVNR  A+AKAI  G I
Sbjct: 193 WACEGKTTWEISKILDVSERTVIFHLSSATSKLGAVNRQHAVAKAILSGLI 243


>gi|320652407|gb|EFX20705.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H- str. H 2687]
          Length = 240

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                       L   N     ++W          +  Q             G+   + L
Sbjct: 71  YQAKNFLAIAPVLNPENFSQGHLMWNDDLF-----NEAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F      E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 EILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|163744256|ref|ZP_02151616.1| Transcriptional activator protein RaiR, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381074|gb|EDQ05483.1| Transcriptional activator protein RaiR, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 239

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 15/231 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++     L      +++     +   + I++A +             Y     D  +   
Sbjct: 16  QADGQAALGQVSEALRDHYGILHVVYHWIDTAGEQ-------YGCGTYGALWSDRYHEHN 68

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +        P+ W+ +   +                +   G + PVR    + 
Sbjct: 69  YLRIDPVVSGCYRRFEPVDWKDLDWTSRAARK--FRRDASDHGVGNQGFSVPVRGPHGQF 126

Query: 130 GYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQ 183
                                  +   A +      L L   +R  A + L+ RE   + 
Sbjct: 127 ALFTTNHSCTDALWSSFTARHRRDLIWAAHCFNEKALALAPNRRPGAVQALSPREVDAMT 186

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   GY   ++A++L +S HT+ AY+ SA  KL A N   A+A+A+  G I
Sbjct: 187 LLAVGYNRAQVAQRLSISEHTLRAYVESARFKLGASNTTHAVARALSRGLI 237


>gi|62822972|gb|AAY15207.1| transcriptional activator PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 11/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++     +    ++   F  +        P  +       NY  D             D 
Sbjct: 22  DMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H      PI+W +       +                 G+A P      + G +   
Sbjct: 82  TVKHSKVSSAPILWSNELFRGCAD-----LWSEAKDSHLCHGLAQPSFNAQGRVGVLSLA 136

Query: 136 SEFLMLANEVIIEA----HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189
            +   ++ +                     EL    +  +     + RE   L+   DG 
Sbjct: 137 RKNNPISLQEFEALKPVTRAFAAAAHEKISELESDVRVFNTGVEFSGRECDVLRWTADGK 196

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TSEEI   +G+   TVN +  +   K+ A NR+QA++ A+  GYI
Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|26417542|gb|AAM75413.1| transcriptional regulator PpuR [Pseudomonas putida]
          Length = 238

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 12/234 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L   +    ++    L ++  ++   NF    I          Q +    +Y     
Sbjct: 7   DELLRLSEMERFEDWLAHLKILTRKLGYSNFL---IGLKPAPTDANQQVLIYSDYPDAWR 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
              +       D  + H  +   P++W         ES                G+A P+
Sbjct: 64  TRYDAESYAAVDPVVQHCLNANRPLLWDRDNYRRPSESE---FFEEAAAHGLQQGLALPL 120

Query: 123 RLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
                + G +                E +  A       +   L+   + S+    LT R
Sbjct: 121 HGPRGEAGMLCLKPSESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVH-LTSR 179

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   LQ +  G T+ EI+  L  +   ++ +  +   K    +R  A+ KAI+ 
Sbjct: 180 EKEVLQWSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQ 233


>gi|209863456|gb|ACI88828.1| PhzR [Pseudomonas sp. G5(2008b)]
          Length = 241

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 11/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++     +    ++   F  +        P  +       NY  D             D 
Sbjct: 22  DMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H      PI+W +       +                 G+A P      + G +   
Sbjct: 82  TVKHSKVSSAPILWSNELFRGCAD-----LWSEAKDSHLCHGLAQPSFNAQGRVGVLSLA 136

Query: 136 SEFLMLANEVIIEA----HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189
            +   ++ +                     EL    +  +     + RE   L+   DG 
Sbjct: 137 RKNNPISLQEFEALKPVTRAFAAAAHEKISELESDVRVFNTGVAFSGRECDVLRWTADGK 196

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TSEEI   +G+   TVN +  +   K+ A NR+QA++ A+  GYI
Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|59940041|gb|AAX12559.1| LuxR-type transcriptional regulator [Aeromonas eucrenophila]
          Length = 260

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 11/239 (4%)

Query: 1   MSENTLT--GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58
           M ++ L    +  +S+ +      LI        +  Y     +    ++        Y 
Sbjct: 1   MKQDQLLEYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPRAEVFMQYP 60

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAG 117
                          D  +       LPI W  ++     ++      + L        G
Sbjct: 61  DPWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNG 120

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSA 170
           I+FP+     +NG + F +     ++++++E           +       + +  +    
Sbjct: 121 ISFPLHGAAGENGILSFITSER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREHDP 179

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              LT+RET CL  A +G TS EIA  LG++  TVN +L   T K  ++NR  AIAK +
Sbjct: 180 HEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGV 238


>gi|163761139|ref|ZP_02168216.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162281690|gb|EDQ31984.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 246

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 87/230 (37%), Gaps = 5/230 (2%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDF----PRRQQLICELHNYDLDSGDI 64
           +  S ++     + +++    +  F  +++ +         +    I  + ++  +    
Sbjct: 15  EPISKIRTTFDAIQVLRKTCLSYGFRYFSVLTIPAMVSESAQVMSHISVISSWPPELIAD 74

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
            + L        L      + P++++    +     +    +  L        G+ FPV+
Sbjct: 75  YDRLELGKNSPVLERLRKQITPLLFEVENIDSERDGAEQASAKELFTRFGVTMGVYFPVQ 134

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            G  +   V F      L+   +         ++    ++     +A   L  RET  LQ
Sbjct: 135 DGRGQRFAVCFMGARKPLSATELPSLAMFATLLVDQLSQITANEDTAKLVLNARETEVLQ 194

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              +G TS EIA   GLS HTVN Y   AT KL   NR QA+ +AIR G 
Sbjct: 195 WTAEGKTSAEIARITGLSEHTVNHYATIATQKLGCSNRTQAVVQAIRLGL 244


>gi|310769028|gb|ADP21168.1| PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 11/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++     +    ++   F  +        P  +       NY  D             D 
Sbjct: 22  DMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H      PI+W +       +                 G+A P      + G +   
Sbjct: 82  TVKHSKVSSAPILWSNELFRGCAD-----LWSEAKDSHLCHGLAQPSFNAQGRVGVLSLA 136

Query: 136 SEFLMLANEVIIEA----HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189
            +   ++ +                     EL    +  +     + RE   L+   DG 
Sbjct: 137 RKNNPISLQEFEALKPVTRAFAAAAHEKISELESDVRVFNTDVEFSGRECDVLRWTADGK 196

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TSEEI   +G+   TVN +  +   K+ A NR+QA++ A+  GYI
Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|325292093|ref|YP_004277957.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059946|gb|ADY63637.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 246

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 80/220 (36%), Gaps = 3/220 (1%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   L  +      + F +  ++ + +          + ++  +     +         
Sbjct: 28  DIFRFLKRLTEAWGFKAFMV--LDLSAEMASELSQCTIITSWPAELLQRYDEEGMLQRSL 85

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQ-LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            +        P         +  E++ +   + L         + FPV       G V F
Sbjct: 86  VMAQLKKSTTPFSVSLDFLVSGDENAPKKPVIGLFERFDMINSVWFPVHDITTMRGAVSF 145

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           +     L    + E       +     E+ +        L ERE  CL     G TS EI
Sbjct: 146 SGNKTTLPTSQLAELFYISSHIFARLSEIRRLDLRVPETLNEREIDCLNWTAAGKTSAEI 205

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE + LS HT+N YL  AT KLD VNR QA+AKA+R G I
Sbjct: 206 AEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGLI 245


>gi|159044368|ref|YP_001533162.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912128|gb|ABV93561.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 243

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 5/229 (2%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
             ++ +  ++   +    +       + +   +    P  +  +     +          
Sbjct: 11  VSRAETPAQIWDAVLPFAHSFGIDKVSYHNTPAFGAVPGSETAVF-ARGFPESWLCDYVN 69

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D    +      P  W  I + T + +     ++         G+A  V     
Sbjct: 70  ERLYEVDPIPAYAAHATEPFRWSDIAKLTPLTAPETDFLKRLLQQGLGDGLALQVFGPNM 129

Query: 128 KNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           +NGYV   F S    L+   I E   A       +  L    +     LT RE   L   
Sbjct: 130 RNGYVGVGFASSDPDLSGGDIRELQAAAQAAHLRYCTLVPVATP--EALTPREREVLGWI 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++  IAE LG+S HTV+  +     KL+  +R  A  + I  G I
Sbjct: 188 ARGKSNSVIAEILGVSPHTVDTLVRRIYGKLEVADRTTAAIRGIGAGLI 236


>gi|197344637|gb|ACH69668.1| LuxR family transcriptional regulator [uncultured proteobacterium]
          Length = 246

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 13/231 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +++   +L   L  +Q    A  F        L  P    +      Y     +I     
Sbjct: 22  EATDEADL---LKRMQAAAVASGFEHVLFGIELRRPFLDPIQHITSGYPDSYQEIYRTKG 78

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  + +  +   P+IW                +          G + PVR G H  
Sbjct: 79  FISRDPSVAYCQTHTKPLIWGEDMYLADSYE----IMEESTKYGLSHGFSVPVRDGPHVV 134

Query: 130 GYVIFTSEFLMLANEV---IIEAHGA---CYQVITDFLELFKKRSSAARNLTERETSCLQ 183
             +    +    +      +++A      C  V +  + +    ++    L+ RE  CL+
Sbjct: 135 SMLSLARDKPFESAAEKKLVVDAGMVLANCVHVASKNIIVPDVETTLRPKLSRREHECLK 194

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G ++  I++ L +S  TV  ++ +   KL+   R+QA    +  G I
Sbjct: 195 WIAEGKSNGVISDLLKISEPTVEFHIRNLFTKLNVATRVQAAVVGVLMGLI 245


>gi|163734517|ref|ZP_02141956.1| transcription regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161392010|gb|EDQ16340.1| transcription regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 267

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 70/204 (34%), Gaps = 4/204 (1%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
            + ++ ++    P  + L      +                D      +    P  W   
Sbjct: 58  VSYHSDDAQ--LPGSKPLGIVSDGFPEGWVCEYLESELFRVDPIPQLASILSRPFRWSEA 115

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAH 150
            +   +   G+  ++         G+A  V     +N YV   F      L ++ I E  
Sbjct: 116 PKLMRLSQEGERYMQTLADSGLGDGVAMQVYGPNMRNAYVGLGFGEHDPNLTSDEIFELQ 175

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A       + EL + R   A  L+ RE   LQ    G ++  IAE LG+S HTV+    
Sbjct: 176 CAAQIAHIRYCELTEYRQRTADTLSPREVEILQWIARGKSNSVIAEILGISRHTVDTITR 235

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KLD  +R  A  + +  G +
Sbjct: 236 RIFEKLDVNDRTTAAIRGLGSGLV 259


>gi|227823797|ref|YP_002827770.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
 gi|227342799|gb|ACP27017.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 12/235 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  + +E+ P    + +R     + +       + P R   +     +      I    
Sbjct: 14  EEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLR---LLLAGRWPESWPQIYIRK 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                D  + +         W+               +  +        F G  FPV   
Sbjct: 71  KYVVIDPTIRYLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGDIFPVHGR 130

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTERET 179
               G +      + L+   +        ++    LEL       +  S     +T RE 
Sbjct: 131 RGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRREM 190

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L    DG TS +I + L +S HTV+ Y+     KL A NR  A+A A R G I
Sbjct: 191 EALNYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHAVAIAFRLGLI 245


>gi|50084356|ref|YP_045866.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530332|emb|CAG68044.1| putative transcriptional regulator, luxR family [Acinetobacter sp.
           ADP1]
          Length = 246

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 3/229 (1%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             +++S ++++   +      I      + +I          ++     N+  D  +I  
Sbjct: 18  QIRQASKIEDIFDVVVEFAQNIDFDRLIICSIAPHGKEELIDEVFFVYGNW-TDRTNIEE 76

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                       H      P  W     +   + + ++   +       +G+  P+    
Sbjct: 77  RNKYLRNCPITRHIFDYDEPFFWTKTFNKNNSKETYRVIKNISER-GEESGVQVPIFGRT 135

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLA 185
              G + F  +   L  +        C     +             + LT+RE   L+  
Sbjct: 136 GLEGAISFAGKLSDLGADFRFILQSVCVTAFREIQSKRSLNLLRENSVLTQREKEILKWT 195

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G    EIAE L +S  TV  +L S   KL+  +  QAIA A+  G I
Sbjct: 196 AVGRKQSEIAEILKISERTVENHLRSIRKKLEVKSTGQAIASALLKGEI 244


>gi|309779367|ref|ZP_07674129.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp.
           5_7_47FAA]
 gi|308921925|gb|EFP67560.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp.
           5_7_47FAA]
          Length = 250

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 69/231 (29%), Gaps = 12/231 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           + + L++    +  +Q  +    F           P  +        Y     +   +  
Sbjct: 22  QLNGLRDADAVIRSLQPAVALLGFDYCAYALRAAIPITRFNTLCWSTYPEPWCEHYRVHG 81

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  L      + P++W  I                        G +  +R      
Sbjct: 82  YLAIDPVLQFGQRCVKPVLWSGIATADA------RFWADARQHGLNHGWSHTIRDHTGIF 135

Query: 130 GYVIFTSEFLMLANEVII----EAHGACYQVITDF--LELFKKRSSAARNLTERETSCLQ 183
           G          +  + +     E      +       L   K    AA  L E E   L 
Sbjct: 136 GTFSLVRRATPITEDELAVSEPEMIWLSQRAHGSISTLMAEKVLPDAATRLKEVERQTLH 195

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G T+ E+A  L ++   VN ++ +A  KL+A N+  A+ KA   G I
Sbjct: 196 WTAEGKTAAEVAAILEMTERNVNFHIRNAVTKLNAANKTHAVVKAALLGLI 246


>gi|59940131|gb|AAX12604.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +++ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TTVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL-SVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LP  W  + E       G    + L        GI+FP+     +N 
Sbjct: 74  ACDPIIQLARKQTLPNYWNRLDERARFLPEGSPDVMGLAAEFRLRHGISFPLHGAAGENR 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFQAAIRIVRVSLREDEPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS EIA  LG++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|229592722|ref|YP_002874841.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229364588|emb|CAY52478.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 236

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           E++    ++ N+     F   +   +      Q    E  NY  +   + N       D 
Sbjct: 17  EITSVFEMVINQTYELGFQYCSFKMSSQVSENQTNPIEFTNYPKEWTTVYNQARYFDVDP 76

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H    +LP++W+    +            L   L         V         +  +
Sbjct: 77  VVKHCKRCVLPVVWEGTLFKDAPS-----LWSLAQTLNVNVAWTQAVHDFQGVFSMLTLS 131

Query: 136 SEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                ++   +       +    A + V+             +  LT RET  L+ +  G
Sbjct: 132 RGTDDVSPVELYEKAGHVLWLCHAMHAVVAQKYAGKPSALPPS-KLTPRETEILKWSAMG 190

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            T+ +IA  L LS  TV  ++ S   KL   N+I A+  A + G 
Sbjct: 191 KTASDIATILCLSERTVGFHISSTFKKLGVNNKIAAVLCASKAGL 235


>gi|161724874|emb|CAO85748.1| PmrR protein [Pseudomonas sp. RW10S2]
          Length = 236

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 59/208 (28%), Gaps = 11/208 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +    L  ++   +   F           P  +  I  L NY     D  +       D 
Sbjct: 16  DTQTLLEEVKAAARHLGFDYCAYGLRTPLPVTKPRIFMLSNYSRPWCDHYHANGYLLLDP 75

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H    + P++W         +                 G A     G    G +   
Sbjct: 76  TVRHCQRSMQPVVWGDEIFADAPQ-----LWDEARQAGLRHGWAQSCLEGSKGGGMLTLA 130

Query: 136 SEFLMLANEVII----EAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGY 189
                +    +                 F  L     +      L+ERE   L+ A DG 
Sbjct: 131 RSGEGIGEGELRAHETRMRWLANVAHQGFSRLLSDSWQPQPQSPLSEREREVLRWAADGK 190

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           T  E+A+ L LS+ TV  +  +A  KL 
Sbjct: 191 TLNEVADILTLSIETVKFHTRNAGAKLG 218


>gi|328542023|ref|YP_004302132.1| transcriptional regulator, LuxR family [polymorphum gilvum
           SL003B-26A1]
 gi|326411773|gb|ADZ68836.1| Transcriptional regulator, LuxR family [Polymorphum gilvum
           SL003B-26A1]
          Length = 239

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 78/226 (34%), Gaps = 4/226 (1%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +  + Q++S RL  +         A    +        +  I     +  +  +   +  
Sbjct: 16  RLETAQDVSARLGALARDYGFH--AHVLASFQGPGTVAEPRILAAG-WAQEWQERYLVNQ 72

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +       +P  W     E  +   G              G+  PV       
Sbjct: 73  YAVDDPVVVRATLASMPFRWSDALNEPWVTPRGVRVFDEARAFRLCDGVFIPVYGPKGLE 132

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDG 188
           G +    E + +  E +   H            L +   + +A  LT RE  CL+    G
Sbjct: 133 GGLSLGGERVDVGAEELKALHLVGLYAYDHVRALSQGDPAWSAGTLTPRELECLKWVAAG 192

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TS EI++ LG+S HT + YL  A  KL A NR  A+A+A R   I
Sbjct: 193 KTSWEISQVLGISRHTADWYLAEAVRKLGAANRTHAVAEAFRRAMI 238


>gi|73672744|gb|AAZ80478.1| PpuR [Pseudomonas putida]
          Length = 238

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 12/234 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L   +    ++    L ++  ++   NF    I          Q +    +Y     
Sbjct: 7   DELLRLSEMERFEDWLAHLKILTRKLGYSNFL---IGLKPAPTDANQQVLIYSDYPDAWR 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
              +       D  + H  +   P++W         ES                G+A P+
Sbjct: 64  TRYDAESYAAVDPVVQHCLNANRPLLWDRDNYRRPSESE---FFEEAAAHGLQQGLALPL 120

Query: 123 RLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
                + G +                E +  A       +   L+   + S+    LT R
Sbjct: 121 HGPRGEAGMLCLKPFESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVH-LTSR 179

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   LQ +  G T+ EI+  L  +   ++ +  +   K    +R  A+ KAI+ 
Sbjct: 180 EKEVLQWSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQ 233


>gi|2495423|sp|Q51786|PHZR_PSEFL RecName: Full=Transcriptional activator protein phzR
 gi|1050313|gb|AAC18899.1| shows homology to luxR family; putative [Pseudomonas fluorescens]
          Length = 244

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 69/215 (32%), Gaps = 11/215 (5%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
             ++   F  +        P  +       NY                D  + H      
Sbjct: 35  RALRELRFDFFAYGMCSVTPFMRPKTYMYGNYPEHWLQRYQAANYALIDPTVKHSKVSSA 94

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145
           PI+W +       +                 G+A P      + G +    +   ++ + 
Sbjct: 95  PILWSNELFRNCPD-----LWSEANDSSLCHGLAQPSFNTQGRVGVLSLARKDNAISLQE 149

Query: 146 IIEAH----GACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                          +     LE   +  +     +ERE   L+   DG TSEEI   +G
Sbjct: 150 FEALKPVTKAFAAAALEKISALETDVRAFNTDVEFSERECDVLRWTADGKTSEEIGVIMG 209

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +   TVN +  +   K+ A NR+QA++ A+  GYI
Sbjct: 210 VCTDTVNYHHRNIQRKIGASNRVQAVSYAVALGYI 244


>gi|289649319|ref|ZP_06480662.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 247

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R      L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAAQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I            A   L+ RET  L+ 
Sbjct: 138 LCNARQQKDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +  EIAE   +S  TV  ++ + + KL+     QA+ KAI  G +
Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|150377825|ref|YP_001314420.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150032372|gb|ABR64487.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 243

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 85/240 (35%), Gaps = 11/240 (4%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S +  T + +    +L   L  +       +  +  + S                Y   
Sbjct: 7   LSASLRTLQAAKHRADLQSALGELCEHYGVSHMTILVVCSGGR---SGSYPYCCTTYPER 63

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +          D  +     G LP+ W S+   +  E + +L        +   G+  
Sbjct: 64  WTEKYVGKCFFEIDPVIDVIRWGFLPVDWSSLDRRS--EQAHRLFKEARLYDIGPHGLTI 121

Query: 121 PVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNL 174
           P+R    +   +  T       +  L    I E     + +    L     R +   RNL
Sbjct: 122 PIRGPKGERCLLSVTSNLPGRHWSRLRASSIHELQILSHYLHETVLSASGLRGTDRYRNL 181

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE+ C QL   G  S++IA  LG+S + V  YL SA +KL A    QA+A+A     I
Sbjct: 182 SRRESQCFQLLATGRISKQIAADLGISENAVKLYLRSARMKLGAATSHQAVARASFLELI 241


>gi|323528655|ref|YP_004230807.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385657|gb|ADX57747.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001]
          Length = 242

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 13/231 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           ++   E    +  +          +  +        R +       Y  +     +    
Sbjct: 15  AADEAEWFSAVAGLAETWGFDRLLVAMLPRPT---IRLEDAYVRSTYAPEWRRTYDEQGL 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D  + H  +   P++W     E    +  Q            AG+  P+     + G
Sbjct: 72  VHIDPTVAHCATRSTPLVWS---PEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 128

Query: 131 YVIFTSEFLMLANEVI-IEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQ 183
            + F ++          I+       ++ D         L     +    LT RE  CLQ
Sbjct: 129 MMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLQ 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G ++ EI+  L  S   VN ++ +   KL   +R  A   A + G I
Sbjct: 189 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239


>gi|218509884|ref|ZP_03507762.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli Brasil 5]
          Length = 373

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/194 (38%), Positives = 113/194 (58%), Gaps = 3/194 (1%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +   + SS  +L PRL  +Q    A+ FA+Y ++ +   P +Q+L+CEL N+   +    
Sbjct: 10  VRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFG 68

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVR 123
               + YGD  L H    LLP+ W    +      +       RL  G+LPF+G+AFPVR
Sbjct: 69  KAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVR 128

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           LG   NG+++FT + +  ++++I+E HG C  ++ D L L ++R++AA  L+ERE +CLQ
Sbjct: 129 LGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQ 188

Query: 184 LAGDGYTSEEIAEK 197
           LAGDG  SEEIA K
Sbjct: 189 LAGDGRISEEIARK 202


>gi|257487581|ref|ZP_05641622.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331012605|gb|EGH92661.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 247

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R      L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I            A   L+ RET  L+ 
Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +  EIAE   +S  TV  ++ + + KL      QA+ KAI  G +
Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMGMV 247


>gi|118917992|dbj|BAF40420.1| PsyR [Pseudomonas syringae pv. tabaci]
          Length = 247

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R      L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I                L+ RET  L+ 
Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPTQCKLSTRETGVLKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +  EIAE   +S  TV  ++ + + KL+     QA+ KAI  G +
Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|330985566|gb|EGH83669.1| LuxR transcriptional regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 247

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R      L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAQ-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I            A   L+ RET  L+ 
Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +  EIAE   +S  TV  ++ + + KL+     QA+ KAI  G +
Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|167566223|ref|ZP_02359139.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           oklahomensis EO147]
 gi|167573334|ref|ZP_02366208.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           oklahomensis C6786]
          Length = 230

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 5/221 (2%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +   +       +  + I           +     +Y  +  +          D 
Sbjct: 11  DVRTLIETFRQAALQIGYQHHAIVELSGASHSASVNVVSLHYPSEWVEHYTRNDYFDIDP 70

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
                     P  W  +    +     +  +          GI+ P+         +  +
Sbjct: 71  IPRAAFRYSTPFSWSDVATSNL---RERHLLMEAEDAGLDNGISIPLHQPLGHVLLINLS 127

Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEE 193
                   E     A+    Q    F  +   R    + +LT+RE  CL     G +S  
Sbjct: 128 GTAPTHDAEAKWRNAYLLGMQFHLQFQSMRTSRPIPPSVHLTDREQICLTWVARGKSSWV 187

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L +S +TV+ ++ +A  KL+  +R  A  KA R G I
Sbjct: 188 IANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|239831035|ref|ZP_04679364.1| Transcriptional activator protein solR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823302|gb|EEQ94870.1| Transcriptional activator protein solR [Ochrobactrum intermedium
           LMG 3301]
          Length = 238

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 76/233 (32%), Gaps = 12/233 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +   S  +    L  I    +   FA       +             +   +  D     
Sbjct: 11  ESMQSADDAGQLLEYINTYARQCGFAHTAYLMRIPLLNGVVKWLSFGSLPQEWTDHYADK 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +    + + P++W S       +                 GI+ P       
Sbjct: 71  KYADIDPLVRKALNSIEPLVWSSKLFAEAPQ-----IWTDAQRFGIRVGISQPCWAAQGV 125

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARN------LTERETSC 181
            G + F      L++  I         V     L +++       N      LT RE   
Sbjct: 126 FGMLSFLRSGPALSSGEISMLRRQLQTVANMLHLAMYEHLDVPTMNCVSEVNLTMREREI 185

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 186 LRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|307727058|ref|YP_003910271.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587583|gb|ADN60980.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003]
          Length = 242

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 68/231 (29%), Gaps = 13/231 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           ++   E    +  +          +  +                  Y        +    
Sbjct: 15  AADEAEWFSAVAKLAETWGFDRLLIAMLPRPTMRLE---DAYIRSTYAPAWRRTYDEQGL 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D  + H  +   P++W     E    +  Q            AG+  P+     + G
Sbjct: 72  VHIDPTVAHCATRSTPLVWS---PEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 128

Query: 131 YVIFTSEFLMLANEVI-IEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQ 183
            + F ++          I+       ++ D         L     S    LT RE  CLQ
Sbjct: 129 MMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHAQSLLPKLTPRERECLQ 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G ++ EI+  L  S   VN ++ +   KL   +R  A   A + G I
Sbjct: 189 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239


>gi|186473257|ref|YP_001860599.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195589|gb|ACC73553.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 234

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 10/223 (4%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
                +        F    +        R +       Y        N     + D  + 
Sbjct: 12  TWFRELARLADDWGFDRVLVGILPRPGMRLEDAFIRSTYSPTWRQFYNEQGFAHIDPTVA 71

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
           H  +   P+IW     +       Q            AG++ P+     ++G + F ++ 
Sbjct: 72  HCMTKSSPLIWS---PDLFDTYPAQTMYEEARAHGLRAGVSLPIHGPRQESGLICFVNDH 128

Query: 139 -LMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQLAGDGYTS 191
                    ++       ++ D +       L     +    LT RE  CL+    G ++
Sbjct: 129 NPSDDFWRHLDVVLPNLVLLRDLVIDTSQPHLNTHTQALVPKLTPREQECLKWTARGKST 188

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EI+  L  S   VN +L +   K    +R  A   A + G I
Sbjct: 189 WEISHILNCSEAVVNFHLKNIRTKFGVNSRRAAAVIATQLGLI 231


>gi|298486193|ref|ZP_07004256.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159200|gb|EFI00258.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|306431677|emb|CBM41481.1| N-acyl homoserine lactone sensor/regulator [Pseudomonas savastanoi
           pv. savastanoi]
          Length = 247

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R        NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVISSNYPDSWLKSYVASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I            A   L+ RET  L+ 
Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +  EIAE   +S  TV  ++ + + KL+     QA+ KAI  G +
Sbjct: 198 MAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|315499426|ref|YP_004088229.1| transcriptional regulator, luxr family [Asticcacaulis excentricus
           CB 48]
 gi|315417438|gb|ADU14078.1| transcriptional regulator, LuxR family [Asticcacaulis excentricus
           CB 48]
          Length = 248

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 5/232 (2%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
              +  S++ L          +       +++   +D     Q    +  Y     D   
Sbjct: 16  DTSRVRSVERLFVVFIEAMAHLGFDR-VNFSVMRDMDLDASAQGFGLISTYPTVWQDYYA 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +      + P  W  I+ E  +    +  +R       + GI  P     
Sbjct: 75  HNGLARIDPVVKWAVGSVRPFRWADIEHEAELTRRQRQFLREAEAGGLYNGIGVPFPGPK 134

Query: 127 HKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
              G +   +       M   +V+       Y V    +    + S AA +LT  E   L
Sbjct: 135 TLRGGIALATSVRKARPMENLDVLAAYCHHFYAVYKRLVPPGLRLSPAAASLTRTEQEVL 194

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                G ++E IA++L +   +V+ ++ +   K    NR  A  K +  GYI
Sbjct: 195 FRLAHGLSNEIIADRLSIKAGSVDFHVQNIFRKFGVNNRTAAAMKGLMGGYI 246


>gi|167837236|ref|ZP_02464119.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 237

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%)

Query: 3   ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           E+ L G   + S +E    +      +    F        + +P  +  I    N+    
Sbjct: 6   EDLLAGLDSARSEEEAFRSIETATTALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 62

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L H      P++       +                    G A  
Sbjct: 63  KRRYVEAGFLDIDPILAHGRRSQQPVVLSETLFAS-----SHQMWVEAQSFGLRFGWAQS 117

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174
               +   G +        +    +              +  +   + L K  +   R L
Sbjct: 118 SFDAYGGMGMLALVRSRGPVTEAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 176

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+ A DG TS EI++ L +SV TVN ++ +A +KL   N+  A+ +A   G +
Sbjct: 177 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|307322370|ref|ZP_07601730.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306891988|gb|EFN22814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
          Length = 243

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 84/240 (35%), Gaps = 11/240 (4%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S +  T + +    +L P L  +  R    +     + S                Y   
Sbjct: 7   LSLSLRTLQSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGR---SGLYPDYCTTYPGK 63

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +I         D  +     G LP+ W S+   +    + +L        +   G+  
Sbjct: 64  WTEIYVDKRYFDIDPVIDVIRWGFLPVDWSSLDRRSAQ--AYRLFKEARSYDIGPHGLTI 121

Query: 121 PVRLGFHKNGYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFK-KRSSAARNL 174
           P+R    +      +S              I E     + +    L     +     R L
Sbjct: 122 PIRGSKGERCLFSVSSNLPKRDWSRLGASSIHELQILSHYLHETTLSASGLREVGRYRTL 181

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RET CLQL   G  S++IA  LG+S + V  YL SA VKL+A    QA+AKA     I
Sbjct: 182 SRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKASFLELI 241


>gi|254563872|ref|YP_003070967.1| N-acylhomoserine lactone LuxR family transcriptional regulator
           [Methylobacterium extorquens DM4]
 gi|254271150|emb|CAX27157.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens DM4]
          Length = 165

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 65/164 (39%)

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            Y D  +    S      W  I+   V++   +  +   G      G   P+     + G
Sbjct: 1   MYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERG 60

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            + F    L ++             V+   L +    S     LT RE   LQ   +G T
Sbjct: 61  GLTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKT 120

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             EI E +G+S H V+ +L SA VKL  V+R QA+A+  R G I
Sbjct: 121 DWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164


>gi|209551411|ref|YP_002283328.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537167|gb|ACI57102.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 251

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 74/231 (32%), Gaps = 14/231 (6%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLIC-----ELHNYDLDSGDIPNILIETY 72
              +   +  I    F  Y +   L     Q+            +      I +      
Sbjct: 20  RALVTEFERVIDDCGFEYYGLLRHLPQNPAQRHPEPRAAALADRWPEQWPQIYSAKKYVM 79

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKN 129
            D  + +      P  W+        ++  +   ++     G     G  FPV       
Sbjct: 80  IDPMVRYLAHAQRPFRWRESLAAFGKDAQRRRMEQMMVDAFGHGLEDGYIFPVHGRNGIL 139

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQ 183
           G +    + + L+   I        +     LEL       +    A   LT RE   L 
Sbjct: 140 GSLSLAGKPVELSPVEIALFEAVARKSFWRMLELKDEAQALETVLPADTPLTRREMEILH 199

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS EI + L +S HTV+ Y+     KL A NR QA+A A R   I
Sbjct: 200 YLAEGMTSMEIGKVLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHRLI 250


>gi|222087763|ref|YP_002546300.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725211|gb|ACM28367.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 246

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 9/224 (4%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            +  +++ +++  F  Y +            +     +                D  + +
Sbjct: 22  VVTELESVLRSYKFDFYGLLRHPRPAVDIVSVMLAGRWPDKWPLTYVARKYVLVDPTMRY 81

Query: 80  FNSGLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
                 P  W+          +    +  +          G  FP+       G +    
Sbjct: 82  LGQAQRPFRWRDAMAALKGDPLRRRMEQMMADARANGLVDGYIFPIFGRSGLLGTMTIGG 141

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYT 190
             + L+   +        +V    LEL  +             LT RE   L    +G T
Sbjct: 142 NSVDLSPAELSLFDAVAKKVFWRLLELRDEARPLEEAPAIEAKLTRREIEVLNHLAEGMT 201

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S +I+  L +S HTV+ Y+ S   KL+A NR   +A A R G +
Sbjct: 202 SMDISRTLKISNHTVDWYMNSIQDKLNARNRQHIVAIAFRNGLV 245


>gi|307315521|ref|ZP_07595072.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306898775|gb|EFN29433.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 243

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 86/240 (35%), Gaps = 11/240 (4%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S +  T + +    +L P L  +  R    +     + S                Y   
Sbjct: 7   LSLSLRTLQSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGR---SGLYPDYCTTYPGK 63

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +I         D  +     G LP+ W S+   +    + +L        +   G+  
Sbjct: 64  WTEIYVDKRYFDIDPVIDVIRWGFLPVDWSSLDRRSAQ--AYRLFKEARSYDIGPHGLTI 121

Query: 121 PVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNL 174
           P+R    +      +      ++  L    I E     + +    L     +     R L
Sbjct: 122 PIRGSKGERCLFSVSSNLPKRDWSRLRASSIHELQILSHYLHETTLSASGLREVGRYRTL 181

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RET CLQL   G  S++IA  LG+S + V  YL SA VKL+A    QA+AKA     I
Sbjct: 182 SRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKASFLELI 241


>gi|295700193|ref|YP_003608086.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439406|gb|ADG18575.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 234

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 68/231 (29%), Gaps = 13/231 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           ++   E    +  +          +  +                  Y        +    
Sbjct: 7   AADEAEWFGVITGLAETWGFDRILVAMLPRPTMRLE---DAYLRSTYAPAWRQTYDEQGM 63

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D  + H  S   P+IW     E     + Q            AG+  P+     + G
Sbjct: 64  VHIDPTVAHCLSRSAPLIWT---PEIFATPAQQSLYEEARSYGLGAGVTLPIHGPNQEAG 120

Query: 131 YVIFTSEFLMLA-NEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQ 183
            + F ++          + A      ++ D +       L     S    LT RE  CL+
Sbjct: 121 MMCFVNDDKPADGFRRHVNAALPNLVLLRDLVIDTSKQHLDSHAQSLMPKLTPRERECLK 180

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G ++ EI+  L  S   VN ++ +   K    +R  A   A + G I
Sbjct: 181 WTARGKSTWEISHILSCSEAVVNFHMKNIRAKFGVNSRRAAAVIAAQLGLI 231


>gi|167581251|ref|ZP_02374125.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167619336|ref|ZP_02387967.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257138549|ref|ZP_05586811.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 237

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%)

Query: 3   ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           E+ L G   + S  E    +      +    F        + +P  +  I    N+    
Sbjct: 6   EDLLAGLDSARSEDEAFRSIETAATALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 62

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L H      P++       +                    G A  
Sbjct: 63  KRRYVEAGFLDVDPILAHGRRSQQPVVLNETLFAS-----SHQMWVEAQSFGLRFGWAQS 117

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174
               +   G +        + +  +              +  +   + L K  +   R L
Sbjct: 118 SFDAYGGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 176

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+ A DG TS EI++ L +SV TVN ++ +A +KL   N+  A+ +A   G +
Sbjct: 177 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|209809715|ref|YP_002265254.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
 gi|21311436|gb|AAM46717.1|AF452135_2 LuxR1 [Aliivibrio salmonicida]
 gi|208011278|emb|CAQ81719.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
          Length = 248

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 9/229 (3%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           SSS  +++  L  + N +   N   Y  +   +    +  +  L NY     D  +    
Sbjct: 19  SSSNDQINQCLIEVANTL---NCEYYLFSIISNKSMIKPDVLILDNYPQKWRDHYDETNL 75

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  + +      PI+W    ++T+  +     ++    L  ++G +FP+       G
Sbjct: 76  IKYDPIVDYCFFNHSPILWDIFGKKTLKTNKPN-VIQEAKSLGLYSGFSFPIHSVNGSFG 134

Query: 131 YVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
            + F       + + +              ++  +  + K  + +  +LT+RE  CL  A
Sbjct: 135 MISFAHSNKKQSTDCLFSTACMYIPLIIPALLDSYYRINKNNTESTHDLTKREKECLAWA 194

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G +S EI+  LG +  TV  +L ++  KL   NR Q+++KAI  G I
Sbjct: 195 CEGKSSWEISIILGCTERTVAFHLTNSQTKLGTTNRCQSVSKAILTGAI 243


>gi|83716740|ref|YP_439002.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167577397|ref|ZP_02370271.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167615548|ref|ZP_02384183.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142109|ref|ZP_05590371.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650565|gb|ABC34629.1| transcriptional regulator, LuxR family [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 69/221 (31%), Gaps = 5/221 (2%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +   +       +  + I           +     +Y  +  +          D 
Sbjct: 11  DVRTLIETFRQAALQIGYQHHAIVELSGTSHPASIDVVSLHYPSEWVEHYTRNDYFTIDP 70

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
                     P  W  I    +     +  +          GI+ P+     +   V  +
Sbjct: 71  VHRAAFRYSTPFPWNDIATSNL---RERHLLMEAEDAGLDNGISIPLHQPLGRVLLVSLS 127

Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193
                   +     A+    Q       +   +    + +LT+RE  CL     G +S  
Sbjct: 128 GTAPTHDADAKWRNAYLLGMQFNLQLQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWV 187

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L +S +TV+ ++ +A  KL+  +R  A  KA R G I
Sbjct: 188 IANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|307302498|ref|ZP_07582255.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307316172|ref|ZP_07595616.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|86278997|gb|ABC88593.1| N-acyl homoserine lactone receptor [Sinorhizobium meliloti]
 gi|306898012|gb|EFN28754.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306903168|gb|EFN33758.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 74/235 (31%), Gaps = 12/235 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  + +E+ P    + +R     + +       + P R   +     +      I    
Sbjct: 14  EEMKTREEILPEFERLLDRCGFDFYGIVRQPKPHENPLR---LLLAGRWPEGWPQIYIRK 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                D  +           W+               +  +        F G  FPV   
Sbjct: 71  KYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGYIFPVHGR 130

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTERET 179
               G +      + L+   +        ++    LEL       +  S     +T RE 
Sbjct: 131 RGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRREM 190

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L    DG TS +I + L +S HTV+ Y+     KL A NR   +A A R G I
Sbjct: 191 EALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLGLI 245


>gi|206576935|ref|YP_002237709.1| regulatory protein SdiA [Klebsiella pneumoniae 342]
 gi|290508769|ref|ZP_06548140.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55]
 gi|206565993|gb|ACI07769.1| regulatory protein SdiA [Klebsiella pneumoniae 342]
 gi|289778163|gb|EFD86160.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55]
          Length = 240

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 12/217 (5%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +Q   +A  +  YT+      P  +  +     Y                D  L      
Sbjct: 30  LQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAENYFAIDPVLR----- 84

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT------SE 137
               +   +  E  +                  G+   + L  H  G++  +        
Sbjct: 85  PENFMRGHLPWEDGLFRDAAALWDGARDHGLKKGVTQCLTLPNHAQGFLSVSANNRLPGS 144

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
           +     E+ +        +    LE  +         + RE   L+   +G TS E+A  
Sbjct: 145 YPDDELEMRLRMLTELSLLALLRLE-DEMVMPPEMKFSRRELEILKWTAEGKTSAEVAMI 203

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S +TVN +  +   K +A N+ Q    A+  G I
Sbjct: 204 LSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240


>gi|288934569|ref|YP_003438628.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889278|gb|ADC57596.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22]
          Length = 240

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 12/217 (5%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +Q   +A  +  YT+      P  +  +     Y                D  L      
Sbjct: 30  LQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAENYFAIDPVLR----- 84

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT------SE 137
               +   +  E  +                  G+   + L  H  G++  +        
Sbjct: 85  PENFMRGHLPWEDGLFRDAAALWEGARDHGLKKGVTQCLTLPNHAQGFLSVSANNRLPGS 144

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
           +     E+ +        +    LE  +         + RE   L+   +G TS E+A  
Sbjct: 145 YPDDELEMRLRMLTELSLLALLRLE-DEMVMPPEMKFSRRELEILKWTAEGKTSAEVAMI 203

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S +TVN +  +   K +A N+ Q    A+  G I
Sbjct: 204 LSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240


>gi|43288|emb|CAA27327.1| unnamed protein product [Escherichia coli]
          Length = 241

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 82/236 (34%), Gaps = 14/236 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI-AFPVR 123
                    D  L   N     ++W             Q             G+ +    
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVHSVFNA 125

Query: 124 LGFHKNGYVIFTS---EFLMLANEVI-IEAHGACYQVITDFLEL-FKKRSSAARNLTERE 178
                 G++ F+      + + ++ + ++      + +   + L  +   +   N ++RE
Sbjct: 126 AQTGALGFLSFSRCSRREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKRE 185

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 186 KEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 241


>gi|71733308|ref|YP_273861.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71553861|gb|AAZ33072.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320327729|gb|EFW83737.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 233

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R      L NY                
Sbjct: 10  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 64

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 65  DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 123

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I            A   L+ RET  L+ 
Sbjct: 124 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 183

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +  EIAE   +S  TV  ++ + + KL+     QA+ KAI  G +
Sbjct: 184 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINIGMV 233


>gi|150398334|ref|YP_001328801.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150029849|gb|ABR61966.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 12/235 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  + +E+ P    + +R     + +       + P R   +     +      I    
Sbjct: 14  EEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLR---LLLAGRWPEGWPQIYIRK 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125
                D  +           W+   +   +        S+         F G  FPV   
Sbjct: 71  KYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLFDGYIFPVHGR 130

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTERET 179
               G +      + L+   +        ++    LEL       +  S     +T RE 
Sbjct: 131 RGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRREM 190

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L    DG TS +I + L +S HTV+ Y+     KL A NR   +A A R G I
Sbjct: 191 EALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAFRLGLI 245


>gi|170693116|ref|ZP_02884277.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170142114|gb|EDT10281.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 255

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 71/228 (31%), Gaps = 10/228 (4%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             + +     + +  +   F    I        R +       Y        +     + 
Sbjct: 28  AADEAAWFGAVADLAETWGFDRLLIAMLPRPTIRLEDAYVRSTYAPAWRRTYDEQGLVHI 87

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H  +   P++W     E  I +  +            AG+  P+     + G + 
Sbjct: 88  DPTVAHCATRSTPLVWS---PEIFITAPQRSMYEEARAHGLRAGVTLPIHGPNQEAGMMC 144

Query: 134 FTSEFLMLANEVI-IEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQLAG 186
           F ++          I+       ++ D         L     +    LT RE  CLQ   
Sbjct: 145 FVNDANPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHTQTLLPKLTPRERECLQWTA 204

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EI+  L  S   VN ++ +   KL   +R  A   A + G I
Sbjct: 205 RGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 252


>gi|153007543|ref|YP_001368758.1| autoinducer-binding domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559431|gb|ABS12929.1| Autoinducer-binding domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 235

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 14/234 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +   S  +    L  I    +   FA       +             +   +  D     
Sbjct: 8   ESMQSADDAGQLLEYIGTYARQCGFAHTAYVMRVPLLNGVVKWLSFGSLPQEWTDHYTAR 67

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +    + + P++W S       +                 GI+ P       
Sbjct: 68  KYADVDPLVRKALNSIEPLVWSSKLFAEAPQ-----IWADAQRFGIKVGISQPCWAAQGV 122

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARN------LTERETS 180
            G + F      L++  I        Q+  + L L   +       N      LT RE  
Sbjct: 123 FGMLSFLRTGPALSSGEISML-RRQMQIAANLLHLSMYEHLDVPTMNCVSEVNLTMRERE 181

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|59940155|gb|AAX12616.1| LuxR-type transcriptional regulator [Aeromonas sp. 13m]
          Length = 260

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 9/231 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      + L        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVIIE----AHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQ 183
            + F +     ++++++E           +       + +  +       LT+RET CL 
Sbjct: 134 ILSFITAER-ASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLF 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G TS +IA  L ++  TVN +L   T K  ++NR QAIAK +  G +
Sbjct: 193 CASEGKTSGDIACILRITERTVNYHLNHVTRKTVSMNRYQAIAKGVSSGIL 243


>gi|293393463|ref|ZP_06637774.1| transcriptional activator protein LasR [Serratia odorifera DSM
           4582]
 gi|291424064|gb|EFE97282.1| transcriptional activator protein LasR [Serratia odorifera DSM
           4582]
          Length = 237

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 75/230 (32%), Gaps = 15/230 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +  +  +L   L      I    + L       D  +       L N+     +    L 
Sbjct: 12  RIDNFSQLDEVLAERCQAIGFDGYLLGVTGHGRDINQA----VVLTNHPPAWRETYTRLG 67

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  + H   GL P+ W    +   I +      +         G++FP+     + 
Sbjct: 68  YINTDPTVAHCLGGLFPLEW----QACPITAETAPFWQEASYYGLAHGVSFPLHGVQGEQ 123

Query: 130 GYVIFT-SEFLMLANEVIIEAHGACYQVITDFLE------LFKKRSSAARNLTERETSCL 182
           G +  +           +++       ++ D L       L +K    A  L+ RE    
Sbjct: 124 GILSLSLGRQRQRDYRELMQQRWGELYILRDILLHHCIRLLDEKNKLTATVLSPREIEVC 183

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +    G T+ EI+  L  S   VN +  +   K +  +R  AI KAI  G
Sbjct: 184 KWFTIGKTTWEISRILNCSEANVNFHFKNIRRKFNVSSRGAAIIKAIASG 233


>gi|330891500|gb|EGH24161.1| LuxR transcriptional regulator [Pseudomonas syringae pv. mori str.
           301020]
          Length = 247

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 15/229 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R      L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I            A   L+ RET  L+ 
Sbjct: 138 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              G +  EIAE   +S  TV  ++ + + KL+     QA+ KAI  G 
Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGM 246


>gi|167840217|ref|ZP_02466901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           thailandensis MSMB43]
          Length = 230

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 5/221 (2%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +   +       +  + I           +     +Y  +  +          D 
Sbjct: 11  DVRTLIETFRQAALQIGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYTRSDYFAIDP 70

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
                     P  W  I    +     +  +          GI+ P+     +   V  +
Sbjct: 71  VHRAAFQYSTPFSWNDIATSNL---RERHLLMEAEDAGLDNGISIPLHQPLGRVLLVSLS 127

Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193
                   +     A+    Q    F  +        + +LT+RE  CL     G +S  
Sbjct: 128 GTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCSPIPPSVHLTDREQMCLTWVARGKSSWV 187

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L +S +TV+ ++ +A  KL+  +R  A  KA R G I
Sbjct: 188 IANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|240141366|ref|YP_002965846.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|240011343|gb|ACS42569.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
          Length = 165

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 65/164 (39%)

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            Y D  +    S      W  I+   V++   +  +   G      G   P+     + G
Sbjct: 1   MYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERG 60

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            + F    L ++             V+   L +    S     LT RE   LQ   +G T
Sbjct: 61  GLTFAGRQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKT 120

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             EI E +G+S H V+ +L SA VKL  V+R QA+A+  R G I
Sbjct: 121 DWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164


>gi|45259344|emb|CAF32980.1| uR protein [Pseudomonas putida]
          Length = 238

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 72/234 (30%), Gaps = 12/234 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +  L   +    ++    L ++  ++   NF    I          Q +    +Y     
Sbjct: 7   DELLRLNEMERFEDWLAHLKILTRKLGYSNFL---IGLKPAPTDANQEVLIYSDYPDAWR 63

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
              +       D  + H  +    ++W         ES                G+A P+
Sbjct: 64  TRYDAESYAAVDPVVQHCLNANRALLWDRDNYRRPSESE---FFEEAAAHGLQQGLALPL 120

Query: 123 RLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
                + G +                E +  A       +   L+   + S+    LT R
Sbjct: 121 HGPRGEAGMLCLKPSESGPQATATMIESLPTATLLRDYAMEGMLKARIECSTPVH-LTSR 179

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   LQ +  G T+ EI+  L  +   ++ +  +   K    +R  A+ KAI+ 
Sbjct: 180 EKEVLQWSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQ 233


>gi|85713529|ref|ZP_01044519.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
 gi|85699433|gb|EAQ37300.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
          Length = 191

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 2/183 (1%)

Query: 52  CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111
             LH +     +        + D  +   N+   P +W  ++       +    +     
Sbjct: 10  VVLHRWPKAWSERYFTQGYLFDDPTIQRVNTSTEPFLWSELEPSYRNTPAPTRVMGEARE 69

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
                G   P+     +       SE   +  +V  +            L   +K + A 
Sbjct: 70  FNLGCGFTVPMITLDGQAAGFSLASERADVPPKVRRQLQLIAMHAFARALA--QKYNPAP 127

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            NLT RE   LQ   +G +  EI   L +S H V+        KL+A NR Q  A A+R 
Sbjct: 128 VNLTPREMDILQWMAEGKSDWEIGVILKVSEHFVDKIARQLRAKLNATNRTQTAATALRH 187

Query: 232 GYI 234
             I
Sbjct: 188 NLI 190


>gi|53716260|ref|YP_106160.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53722590|ref|YP_111575.1| N-acylhomoserine lactone-dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|67640560|ref|ZP_00439362.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei GB8 horse 4]
 gi|76818021|ref|YP_335776.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|124383134|ref|YP_001025820.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126442943|ref|YP_001063209.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 668]
 gi|126446904|ref|YP_001077903.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei NCTC 10247]
 gi|126457976|ref|YP_001076161.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106a]
 gi|134281979|ref|ZP_01768685.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 305]
 gi|167002385|ref|ZP_02268175.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei PRL-20]
 gi|167724282|ref|ZP_02407518.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei DM98]
 gi|167743255|ref|ZP_02416029.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 14]
 gi|167820433|ref|ZP_02452113.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 91]
 gi|167828803|ref|ZP_02460274.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 9]
 gi|167850259|ref|ZP_02475767.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei B7210]
 gi|167898862|ref|ZP_02486263.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 7894]
 gi|167907182|ref|ZP_02494387.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei NCTC 13177]
 gi|167915548|ref|ZP_02502639.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 112]
 gi|167923392|ref|ZP_02510483.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei BCC215]
 gi|217425142|ref|ZP_03456637.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 576]
 gi|226195987|ref|ZP_03791573.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pakistan 9]
 gi|237510506|ref|ZP_04523221.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313819|ref|ZP_04812836.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106b]
 gi|254176584|ref|ZP_04883242.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei ATCC 10399]
 gi|254185131|ref|ZP_04891720.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1655]
 gi|254186897|ref|ZP_04893413.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254194457|ref|ZP_04900889.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei S13]
 gi|254201028|ref|ZP_04907393.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei FMH]
 gi|254204993|ref|ZP_04911346.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei JHU]
 gi|254264301|ref|ZP_04955166.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1710a]
 gi|254301416|ref|ZP_04968860.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 406e]
 gi|254359112|ref|ZP_04975384.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei 2002721280]
 gi|52213004|emb|CAH39042.1| putative N-acylhomoserine lactone-dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|52422230|gb|AAU45800.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           23344]
 gi|76582494|gb|ABA51968.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710b]
 gi|126222434|gb|ABN85939.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 668]
 gi|126231744|gb|ABN95157.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106a]
 gi|126239758|gb|ABO02870.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei NCTC 10247]
 gi|134246508|gb|EBA46596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 305]
 gi|147748640|gb|EDK55715.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei FMH]
 gi|147754579|gb|EDK61643.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei JHU]
 gi|148028299|gb|EDK86259.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei 2002721280]
 gi|156105360|gb|ABU49179.1| BpsR3 [Burkholderia pseudomallei]
 gi|157810944|gb|EDO88114.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 406e]
 gi|157934581|gb|EDO90251.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697626|gb|EDP87596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei ATCC 10399]
 gi|169651208|gb|EDS83901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei S13]
 gi|184215723|gb|EDU12704.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1655]
 gi|217391747|gb|EEC31774.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 576]
 gi|225931880|gb|EEH27881.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002711|gb|EEP52135.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238521303|gb|EEP84756.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei GB8 horse 4]
 gi|242137058|gb|EES23461.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106b]
 gi|243061949|gb|EES44135.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei PRL-20]
 gi|254215303|gb|EET04688.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1710a]
 gi|261827149|gb|ABM99449.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
          Length = 230

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 69/221 (31%), Gaps = 5/221 (2%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +   +       +  + I           +     +Y  +  +          D 
Sbjct: 11  DVRTLVETFRQAALQIGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYTRNDYFAIDP 70

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
                     P  W  +          +  +          GI+ P+     +   V  +
Sbjct: 71  VHRAAFRYSTPFSWNDV---ATANLRERHLLMEAEDAGLDNGISIPLHQPLGRVLLVSLS 127

Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193
                   +     A+    Q    F  +   +    + +LT+RE  CL     G +S  
Sbjct: 128 GTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWV 187

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L +S +TV+ ++ +A  KL+  +R  A  KA R G I
Sbjct: 188 IANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|301382983|ref|ZP_07231401.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062866|ref|ZP_07254407.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           K40]
 gi|302131657|ref|ZP_07257647.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 247

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A +T   A     R+     L NY                
Sbjct: 24  LRQLIEDFENDLHHIGEFTYAYFTTPKA-----RKAKPIILSNYPDSWLKSYIASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDF---LELFKKRSSAAR-NLTERETSCLQL 184
             +       +  I     +   +  +            +     A   L+ RET  L+ 
Sbjct: 138 LCNAKQQHDFDQRIRDKTADIQMSLIRFHDRLIKTRAPHELFPPTANCKLSSRETDILKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G    EIAE   +S  TV  ++ + + KL+     QA+ KAI+ G +
Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247


>gi|28871016|ref|NP_793635.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|13182979|gb|AAK15017.1|AF234628_3 PsmR [Pseudomonas syringae pv. maculicola]
 gi|28854266|gb|AAO57330.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 247

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A +T   A     R+     L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFTTPKA-----RKAKPIILSNYPDSWLKSYIASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDF---LELFKKRSSAAR-NLTERETSCLQL 184
             +       +  I     +   +  +            +     A   L+ RET  L+ 
Sbjct: 138 LCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHELFPPTANCKLSSRETDILKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G    EIAE   +S  TV  ++ + + KL+     QA+ KAI+ G +
Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247


>gi|187918993|ref|YP_001888024.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717431|gb|ACD18654.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 234

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 66/231 (28%), Gaps = 13/231 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           ++   E    +  +          +  +        R +       Y        +    
Sbjct: 7   AADEAEWFGAIAGLAETWGFDKLLIAMLPRPT---IRLEDAYVRSTYSPTWRRTYDEQGL 63

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D  + H  +   P+IW     +    +               +GI  P+     + G
Sbjct: 64  VHIDPTVAHCATRATPLIWS---PDIFKTAPQLSMYEEARAHGLRSGITLPIHGPNQEAG 120

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCLQ 183
            + F ++                  V+   L        L     +    LT RE  CL+
Sbjct: 121 MMCFVNDNNPNDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLK 180

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G ++ EI+  L  S   VN ++ +   K    +R  A   A + G I
Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 231


>gi|149187186|ref|ZP_01865484.1| LuxR, transcriptional regulator [Vibrio shilonii AK1]
 gi|148838722|gb|EDL55661.1| LuxR, transcriptional regulator [Vibrio shilonii AK1]
          Length = 259

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 12/226 (5%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            ++LS +L  +   I   ++ L+ ++        +     L N  L            Y 
Sbjct: 23  FEDLSGKLAEVTEVIGFEHY-LFAVSV--PVTVMRAENVVLTNQPLAWRQFYEDNEVMYF 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H  + +LP+ W+S+    + +      ++L        GI  P+R      G + 
Sbjct: 80  DQVVLHCRNSMLPLQWRSLLANDIPDDKN--VIKLASDFGLGDGITIPLRANHGCLGLIS 137

Query: 134 FT---SEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAG 186
           F+       +     I+  +        +      + +K+    + +LT RE  CL    
Sbjct: 138 FSNRKGTRKIDHESTILSTYVGSLVADYINDIRNHVCEKQFGQVKSSLTLREQICLAWVA 197

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G +S E+A+ +G S  TVN ++ +A+ KL+A +R QA++KA+  G
Sbjct: 198 EGKSSWEVAQIIGCSERTVNFHIQNASEKLNAFSRTQAVSKALLTG 243


>gi|83716463|ref|YP_440275.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650288|gb|ABC34352.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 425

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            ++  +NFA                 C L  +  +     +       D  + H     +
Sbjct: 218 RQLGFKNFAY-----RHQISGAASSRCMLDGFPTEWRLRYDAADYLSIDPVVQHCRCRTV 272

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL------ 139
           P+IW      T      +L            G++ PV         +   ++        
Sbjct: 273 PLIWHDELYTTG---RAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDAN 329

Query: 140 --MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +    +        +  + + L+   +R  +   LT RE   LQ AG G T+ EI++ 
Sbjct: 330 DILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKI 388

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+S  TV  +L +A  K+ A NR QA+  A   G I
Sbjct: 389 LGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 425


>gi|115360652|ref|YP_777789.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285980|gb|ABI91455.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 237

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 65/219 (29%), Gaps = 14/219 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            + + S  E   ++      I    F          +P  ++ +    N+        + 
Sbjct: 12  IEATHSEHEAFGKIASAVKEI---GFEYSAYCLQTPWPLSRRKVLVFSNFPEPWQRRYHD 68

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  L        P+IW     E   +                 G +        
Sbjct: 69  ARYIDVDPLLRRGRQSYAPVIWSDAVFEGTPQ-----LWEEAQAHGLRYGYSLAAVSNCG 123

Query: 128 KNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181
            +G +        L    +    ++                  + S      LT+RE   
Sbjct: 124 VSGMMSMARSHTPLTVRELQQQELKMRWLVNAAHLAITRAVLPKLSPEGDIELTDREVEV 183

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L+   DG T+ EI+  + +SV+TVN ++ +A  KL+  N
Sbjct: 184 LKWVADGKTAAEISMIMLISVYTVNFHVKNAVTKLNTSN 222


>gi|115359785|ref|YP_776923.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285073|gb|ABI90589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 229

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 74/225 (32%), Gaps = 10/225 (4%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + EL   L  I +     +        +    +  +    L NY      +         
Sbjct: 11  MDELGRMLIDIGHLAGFDHVCYQEYRMSGGTLKNCRT---LSNYPEAWLSLYRDRAYLTI 67

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D    H  S L+P+IW    +     +  +             G++FP          V 
Sbjct: 68  DPIAQHALSSLMPLIW---GDRIFATTEQREFRDEGRIYGLNDGVSFPAHSRHGDVACVS 124

Query: 134 FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           F  +   L        +         ++ D     +   S A  L+ RE   L+   +G 
Sbjct: 125 FVRQARALDDGDMPCDVPSWGALVANLMLDACRRLEAVQSDAPCLSTRELEILKWVAEGK 184

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +I+  + L+ H V  ++ S   K D   R QA+  A RFG +
Sbjct: 185 STWDISRIVSLTEHGVLHHIRSIMKKFDVPTRRQAVLMASRFGLL 229


>gi|152970958|ref|YP_001336067.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955807|gb|ABR77837.1| transcriptional activator for cell division (LuxR/UhpA family)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 228

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 13/231 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +  ++ +E+   L   Q   +A  +  YT+      P  +  +     Y           
Sbjct: 6   QSMATGEEVYNLL---QRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAE 62

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L          +   +     +                  G+   + L  H 
Sbjct: 63  NYFAIDPVLR-----PENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHA 117

Query: 129 NGYVIFTSEFL-----MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            G++  ++              +         ++T      +         + RE   L+
Sbjct: 118 QGFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILK 177

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS E+A  L +S +TVN +  +   K +A N+ Q    A+  G I
Sbjct: 178 WTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 228


>gi|116254615|ref|YP_770451.1| putative transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|417645|sp|Q03316|RHIR_RHILV RecName: Full=Regulatory protein rhiR
 gi|7259800|gb|AAA26360.2| rhiR [Rhizobium leguminosarum]
 gi|115259263|emb|CAK10396.1| Putative transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 247

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 7/228 (3%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S  ++   L L     +   F+ + I+       R      L N+ +   D       
Sbjct: 22  AKSKDDV---LLLFGKISQYFGFSYFAISGIPSPIERIDSYFVLGNWSVGWFDRYRENNY 78

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D  +    +     +W     +  ++   +  +          G + P+        
Sbjct: 79  VHADPIVHLSKTCDHAFVWSEALRDQKLDRQSRRVMDEAREFKLIDGFSVPLHTAAGFQS 138

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAG 186
            V F +E + L+       +       +           ++  A   +T RE   +    
Sbjct: 139 IVSFGAEKVELSTCDRSALYLMAAYAHSLLRAQIGNDASRKIQALPMITTREREIIHWCA 198

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T+ EIA  LG S  T+   + +   KL+ VN  Q IA++ R   I
Sbjct: 199 AGKTAIEIATILGRSHRTIQNVILNIQRKLNVVNTPQMIAESFRLRII 246


>gi|331019185|gb|EGH99241.1| transcriptional regulator PsyR [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 247

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 75/230 (32%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A +T   A     R+     L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFTTPKA-----RKAKPIILSNYPDSWLKSYIASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQL 184
             +       +  I   A      +I     L K R+        A R L+ RET  L+ 
Sbjct: 138 LCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHELFPPTANRKLSSRETDILKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G    EIAE   +S  TV  ++ + + KL+     QA+ KAI+ G +
Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247


>gi|83720643|ref|YP_442349.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83654468|gb|ABC38531.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 241

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%)

Query: 3   ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           E+ L G   + S  E    +      +    F        + +P  +  I    N+    
Sbjct: 10  EDLLAGLDSARSEDEAFRSIETAATALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 66

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L H      P++       +                    G A  
Sbjct: 67  KRRYVEAGFLDVDPILAHGRRSQQPVVLNETLFAS-----SHQMWVEAQSFGLRFGWAQS 121

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174
               +   G +        + +  +              +  +   + L K  +   R L
Sbjct: 122 SFDAYGGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 180

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+ A DG TS EI++ L +SV TVN ++ +A +KL   N+  A+ +A   G +
Sbjct: 181 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240


>gi|172152203|emb|CAP91064.1| BraR protein [Burkholderia kururiensis]
          Length = 234

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 10/228 (4%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             + +     +     +  F+   +        R +      NY              Y 
Sbjct: 7   ASDETQWFDAVAGLAGSWGFSQVLLAILPRPGMRLEDAYVRSNYASSWRQAYTDQGFAYI 66

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H      P++W      T  + S              AG+  P+     + G + 
Sbjct: 67  DPTVSHCTKHSSPLVWSPDLFATTPQKS---MYEEASAHGLRAGVTLPIHGPRQEAGMLC 123

Query: 134 FTSEFLMLA-NEVIIEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQLAG 186
           F ++          I+       ++ D         L     +    LT RE  CL+   
Sbjct: 124 FVNDSNPNDKFWQHIDTALPNLVLMRDLVIDTSQRHLSAHAQTLIPKLTPRERECLKWTA 183

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EI+  L  S   VN ++ +   K    +R  A   A + G I
Sbjct: 184 LGKSTWEISHILNCSEAVVNFHMKNIRAKFGVNSRRAAAVIATQLGLI 231


>gi|162148611|ref|YP_001603072.1| LuxR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787188|emb|CAP56781.1| putative transcriptional regulator, luxR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 239

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 8/227 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++S++  EL          I     A   +           L+     Y        +  
Sbjct: 18  RRSTTASELRAAFVRATKSISDCYIASGRVKGGAPVNAETALV----TYPDAWLKHYHER 73

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  + +     +P  W+++Q+ +V +    L +          GI   +      
Sbjct: 74  KYLDIDPTIVNAGRSYVPYRWEALQDISVKQRQMFLDI---AETGIKGGITMSLHTPDRA 130

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGD 187
                F     +  +  ++       Q      +L +          + RE  CL     
Sbjct: 131 AFVTSFAFTKAVSEDRDLVALGFINSQYYETLSKLSEAELPGPVPTFSRREKECLLWVSR 190

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T+ +I+  LG+S +T+NAYL +  +KL    RIQA+ +AI    I
Sbjct: 191 GKTTWDISVILGISENTINAYLKNVILKLGCSGRIQAVLRAIDLNLI 237


>gi|167563421|ref|ZP_02356337.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167570595|ref|ZP_02363469.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 237

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 16/231 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S  E    +      +    F        + +P  +  I    N+             
Sbjct: 15  ARSEDEAFRSIEAATTALD---FEYCAYALRVPWPLSRPRIETRSNFPEQWKRRYGEAGF 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  L H      PI+       +                    G A      +   G
Sbjct: 72  LDVDPILAHGRRSQQPIVLTEALFAS-----AHQMWVEAQSFGLRFGWAQSNFDAYGGMG 126

Query: 131 YVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            +        +    +              +  +   + L K  +   R LTERE   L+
Sbjct: 127 MLALVRSSEPMTEAELGAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGLTEREVEVLK 185

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A DG TS EI++ L +SV TVN ++ +A +KL   N+  A+ +A   G +
Sbjct: 186 WAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|317047630|ref|YP_004115278.1| LuxR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949247|gb|ADU68722.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 240

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 71/238 (29%), Gaps = 13/238 (5%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
            E  +  +  +++ +L   L   Q  I+   F  +        P  +  I     Y  D 
Sbjct: 11  GETEIQFQAVTAVLQLKALL---QKHIETLGFDYFAFLIQHPVPFTRPRIFLFSTYPEDW 67

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L         + W                          +G +  
Sbjct: 68  VKHYESENYYAVDPVLLLCQRPGHGVEWTRDLFTGAGN-----LWAEANAYGLMSGFSCS 122

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTE 176
                   G +   S        + +E     + +    L + ++ +  A      + ++
Sbjct: 123 AMASNRAIGILSIASGQQSKTQHLRVELEVKLHFLAELSLRVLERLNDNAMVVLSNDFSQ 182

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+   +G TS EI+  L +S HTVN +  +   + +  N+ Q    A   G I
Sbjct: 183 RELEILKWTAEGKTSAEISLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240


>gi|218674909|ref|ZP_03524578.1| transcriptional activator protein [Rhizobium etli GR56]
          Length = 241

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 81/233 (34%), Gaps = 11/233 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
              S +LQ+L   L  +++     +  L+ +  +        L+     Y  +       
Sbjct: 14  ISASPTLQDLETTLDEVRHIYAISHMVLH-VTRSSGMADSNPLLML--TYPPEWVKQYRD 70

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  +     G LP+ W + + ++    +           +   G+  PVR    
Sbjct: 71  RDYFSIDPVVRLGRRGFLPVEWSASKWDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQG 128

Query: 128 KNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSC 181
           +      TS            + + +     + +    + L   +  +    L+ RE  C
Sbjct: 129 ERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRVMVLSGMREIADFPQLSRRELQC 188

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L++   G  +++I  +L +SV  V  YL SA  KL      +A+AKA     I
Sbjct: 189 LEMTASGLMAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKATALELI 241


>gi|161724871|emb|CAO85746.1| rR protein [Pseudomonas putida]
          Length = 240

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 72/229 (31%), Gaps = 20/229 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            EL  +L  +++      +A Y          R      + NY                D
Sbjct: 23  DELQLQLCDVKD----LKYAYYAATH-----NRNVEPIIISNYPPSWVKSYKDNKSYLID 73

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             + H    + P  W      +  E  G    R        +G  F +R        +  
Sbjct: 74  PIIKHGLREITPFSWHEALANSGPE--GVDFFRRATRYRICSGTTFTLRDASGTFCALSV 131

Query: 135 TSEFLMLANEVIIE-----AHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLA 185
                 +  +  +            +  +  +   K      S+A   L+ RE   LQL 
Sbjct: 132 CDAGSQVDFDRRMAKQQSQLQMLLIKFHSWLMTSRKTDQLFSSAADGPLSTRELGVLQLV 191

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T  EIA   G+S  TV  ++ + + KL   N  QA+ +A R G I
Sbjct: 192 MRGKTYREIATDCGISERTVKFHMSNISGKLQVGNAKQAVYEAKRQGII 240


>gi|145666435|gb|ABP88722.1| transcriptional activator protein [Pseudomonas corrugata]
          Length = 242

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 12/235 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           EN ++G    S +E +  L  I +R+    FA   +      P     I    NY  +  
Sbjct: 17  ENNISGV---SEEEYTEILGWIFSRLGIEKFAYVHL---EPTPFNNSKISIYSNYPSEWV 70

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           D          D  + +      P  W  I  E                     G   P+
Sbjct: 71  DTYRKNSLYKSDPVMANTAITATPFFWNEIPAEIDNNPE---IFDQSASYGIKQGYTVPI 127

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERET 179
                  G +  +SE       +I+ ++    +   VI +     +    +   L+ RE 
Sbjct: 128 HEPGRAFGSLHLSSEENDPDFPIIVRSNLFIIKTLSVIANQYRPMETTIESNLKLSPREI 187

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+    G   +EI   + ++  TV  +    T K+D  N  QA+ KA++  ++
Sbjct: 188 EFLRWLALGKNYKEIGLIMNITERTVKFHAKQMTEKMDCTNVKQAMIKAVQLNFV 242


>gi|83941288|ref|ZP_00953750.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36]
 gi|83847108|gb|EAP84983.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36]
          Length = 244

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 4/228 (1%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ SS+  L   +         R    ++I+           +        +   +    
Sbjct: 11  REVSSVSALWLLVQRFAKAQDFRTVTYHSIDVQSLGDSSFGAVAI--GIPAEFHRMYTEE 68

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D F     S + P  W+ + + T +    +  +          G+   V     +
Sbjct: 69  HLYLDDPFPPFAASQITPFFWRDLPQLTTLTEKQKAYLNRAREFGFADGLVCQVFGPQAR 128

Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
           N  V   F  +    ++  +++ H A       F  L    ++  R L+ RE   L+   
Sbjct: 129 NALVSIGFHHDRPRPSDAEVLDLHVASQFAHMRFCALVAGPAAPNRRLSPRELELLRWIA 188

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++  IA+ +G+S HTV+  +     KLD  +R +A  + + FG I
Sbjct: 189 RGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGVAFGLI 236


>gi|187927560|ref|YP_001898047.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187724450|gb|ACD25615.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J]
          Length = 253

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 81/242 (33%), Gaps = 22/242 (9%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALD----------FPRRQQLIC--ELHNYD 58
           + S  E++  +      +    F    +  A D              + L        Y 
Sbjct: 14  AGSHAEIAAFMERHAGNLGYGRFFYSPLLVAGDARHFFKDDHNVVAAEMLYTKNIFSTYP 73

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
                          D  +    +  LPI W +      ++++               GI
Sbjct: 74  ASWIRRYQEAGHVAADPVVKLITTSNLPIHWDADD----LQAARSPVFDEAREHGLATGI 129

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLELFKKRS-SAAR 172
             P+    H       TS+     ++   +A           +      L    S +   
Sbjct: 130 TIPINGFDHTRALFSVTSDQAPERSQRHTDAISGLAVLTALHLHEAVRRLDASMSNAPIP 189

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE  CLQ A  G TS EIA  L +S  TV  ++G+AT KL A NR QA+A+AI   
Sbjct: 190 SLTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQAVARAISLR 249

Query: 233 YI 234
            I
Sbjct: 250 LI 251


>gi|288733198|emb|CBI71275.1| UnaR protein [Burkholderia unamae]
          Length = 234

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 68/224 (30%), Gaps = 10/224 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
           +     +     +  F+   +        R +      NY        N     Y D  +
Sbjct: 11  AAWFDAVTKLASSWGFSQLMLAILPRPGMRLEDAFIRTNYSAAWRQTYNDHGMAYFDPTV 70

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
            H  +   P+IW     E       Q            AGI  P+     + G + F ++
Sbjct: 71  THCTTRSSPLIWS---PELFATEQQQSMYEEARAYGLRAGITLPIHGPRQEVGMLCFVND 127

Query: 138 FLMLA--NEVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
                   + +  A           + T    L     S    LT RE  CL+    G +
Sbjct: 128 ASPSDGFWDDVNRALPNLVLLRDLVLDTSHRHLTDHVQSLIPKLTPREKECLKWTALGKS 187

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EI+  L  S   VN ++ +   K    +R  A   A + G I
Sbjct: 188 TWEISHILNCSEAVVNFHMKNIRGKFGVNSRRAAAVIATQMGLI 231


>gi|163760010|ref|ZP_02167094.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162282968|gb|EDQ33255.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 247

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 70/222 (31%), Gaps = 9/222 (4%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             +   +    F  + +            +     +  D  ++         D  L +  
Sbjct: 25  ERLSKVVAGLGFDFFKLVRQAGPESGAVDMILAEQWPSDWPELYAKRKYATIDPTLRYLG 84

Query: 82  SGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                  W+      +E       +  +          G  FPV       GY+     +
Sbjct: 85  HSQGGFRWREPMEAYQEDPHYKRMERMMADARRFGLEDGYVFPVHGRRGLVGYLTIAGGY 144

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSE 192
           + L    +        +   + +EL    +           +T+RE   L+  G G TS 
Sbjct: 145 VELLRSEMAMMDALAKKAFWELVELLDPAAHERLNRPVTMQMTKREMQTLEYLGCGMTSN 204

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+   LGLS HTV+ Y+     KL A NR   +A A R G I
Sbjct: 205 EMGTALGLSAHTVDWYMNGIQEKLHAKNRHHVVAIAFRLGLI 246


>gi|328542321|ref|YP_004302430.1| N-acyl homoserine lactone transcriptional regulator, LuxR-like
           protein [polymorphum gilvum SL003B-26A1]
 gi|326412068|gb|ADZ69131.1| Putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like protein [Polymorphum gilvum SL003B-26A1]
          Length = 230

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 66/228 (28%), Gaps = 7/228 (3%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           +++++         +    F  +            +    L  +                
Sbjct: 1   MEDVASLEAAFSKSLWDLGFREWAYQVIRTDALPDEKPLILTTFPDAWYSHYIDNGYHRV 60

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + +  S + P  W ++          +             G+  P+           
Sbjct: 61  DPVILNGPSQVAPFTWSAMSFGMEPSPEQRRLFAEATEFGLGEGVGIPIHGARGSLAMAS 120

Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAG 186
             S+        ++     + H           EL    +      +LT RE  CL    
Sbjct: 121 MVSDHGARGLARLMSTVGKDVHLMSLAFHNHARELLALGRSGRTTVSLTRRERECLLWIA 180

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EI+  LG+S  TV  +L +   K+   N   A+ KAI  G I
Sbjct: 181 AGKSAWEISRILGISARTVYFHLDNVRAKMGVTNVYHAVVKAIMEGMI 228


>gi|16519915|ref|NP_444035.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii
           NGR234]
 gi|2495427|sp|P55629|Y4QH_RHISN RecName: Full=Putative HTH-type transcriptional regulator y4qH
 gi|2182594|gb|AAB92463.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii
           NGR234]
          Length = 326

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 67/221 (30%), Gaps = 3/221 (1%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYGDD 75
           L   L     +   +  A   + S      R +    E+ NY     +    +       
Sbjct: 104 LFDLLSAFAFKFGCKWLAYGPLTSDHKALNRVKCDSEEILNYPDGWRERCLEMGYETIAP 163

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +     G  PI W  +  +       +            +GI  P+R        + F 
Sbjct: 164 VIKESRMGAGPIRWSDMYSDASTTEYERRMFDEAAMFGLRSGITVPLRGPRGSCAIMSFA 223

Query: 136 SE-FLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193
                   +  I     A         ++           L+ RE  C+     G +S +
Sbjct: 224 RHCEREFHDRTIAYLQLAATHFHLRVAKIANLNAVQKIPALSLREKECVLWVARGKSSWD 283

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I   + +S +TVN ++ +   KL   +R  A  KAI  G I
Sbjct: 284 IGVIMRISENTVNFHIKNVMRKLGTSSRTVAAIKAISLGII 324


>gi|330878281|gb|EGH12430.1| transcriptional regulator PsyR [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 247

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 73/230 (31%), Gaps = 15/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A +T   A     R+     L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFTTPKA-----RKAKPIILSNYPDSWLKSYIASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQL 184
             +       +  I   A      +I     L K R+            L+ RET  L+ 
Sbjct: 138 LCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHELFPPTVNCKLSSRETDILKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G    EIAE   +S  TV  ++ + + KL+     QA+ KAI+ G +
Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247


>gi|163744442|ref|ZP_02151802.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381260|gb|EDQ05669.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 239

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 75/222 (33%), Gaps = 13/222 (5%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L+++   +   N +          P           YD               D  + 
Sbjct: 23  EILNVLAQDMGLNNLSYL---GFHKDPCGGSDPVIHTTYDPAWLARYQEENYHLIDPVVD 79

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSE 137
               G LP+ W  +     ++   +              G++ P+R   H    +   S+
Sbjct: 80  SALEGTLPVDWSELP---KVDRVTRDFFGEAMEFGVRQNGVSIPIRDHVHGKAVLTLNSD 136

Query: 138 FLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
             +          I +A      + +D +            L+ RE   L+ A  G T+ 
Sbjct: 137 LRIHEWRKYKRGIIADAIYLGCLLQSDLVAGIAG-GEPGPRLSRREKEVLKWAAVGKTAW 195

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E A+ + +S  TVN +L +A  KLD  N+  A+AKAIR   I
Sbjct: 196 ETAQIMTVSNSTVNHHLYNACAKLDVANKTHAVAKAIRAQLI 237


>gi|83854765|ref|ZP_00948295.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83842608|gb|EAP81775.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 248

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 4/228 (1%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ SS+  L   +         R    ++I+           +        +   +    
Sbjct: 15  REVSSVSALWLLVQRFAKAQDFRTVTYHSIDVQSLGDTSFGAVAI--GIPAEFHRMYTEE 72

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D F     S + P  W+ + + T +    +  +          G+   V     +
Sbjct: 73  HLYLDDPFPPFAASQITPFFWRDLPQLTTLTEKQKAYLNRAREFGFADGLVCQVFGPQAR 132

Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
           N  V   F  +     +  +++ H A       F  L    ++  R L+ RE   L+   
Sbjct: 133 NALVSIGFHPDRPRPTDAEVLDLHVASQFAHMRFCALVAGPAAPNRRLSPRELELLRWIA 192

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++  IA+ +G+S HTV+  +     KLD  +R +A  + + FG I
Sbjct: 193 RGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGLAFGLI 240


>gi|146454419|gb|ABQ41883.1| LuxR [Acidovorax citrulli]
          Length = 242

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 9/231 (3%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPNI 67
           ++ +  EL          +  ++F+L  +    D        +    HNY          
Sbjct: 12  QALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPSRWVSHYIA 71

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D    H    + P  W+ +   +         +          G+  P+     
Sbjct: 72  RNYYLEDPVRRHAPQAMSPYRWKDV---SAQGDREAHIMDEATDAGLADGLGLPIHEPGG 128

Query: 128 KNGYVIFTSEF---LMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQ 183
           +       S     L     V   A    +  +        + +   A  LT RE  CL 
Sbjct: 129 RIFLATVASHQQLTLGNDACVRAYALVTAFHALYTMRFATEQTQIPTAVKLTSREAECLT 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G +S EI   + +S HTVN +L +A  K D  +R+ A  +A   G I
Sbjct: 189 WVAYGKSSREIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239


>gi|238895474|ref|YP_002920209.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262043448|ref|ZP_06016571.1| regulatory protein SdiA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330001006|ref|ZP_08303866.1| regulatory protein SdiA [Klebsiella sp. MS 92-3]
 gi|238547791|dbj|BAH64142.1| LuxR/UhpA-family transcriptional activator for cell division
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259039190|gb|EEW40338.1| regulatory protein SdiA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537810|gb|EGF64005.1| regulatory protein SdiA [Klebsiella sp. MS 92-3]
          Length = 240

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 13/231 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +  ++ +E+   L   Q   +A  +  YT+      P  +  +     Y           
Sbjct: 18  QSMATGEEVYNLL---QRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAE 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L          +   +     +                  G+   + L  H 
Sbjct: 75  NYFAIDPVLR-----PENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHA 129

Query: 129 NGYVIFTSEFL-----MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            G++  ++              +         ++T      +         + RE   L+
Sbjct: 130 QGFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILK 189

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS E+A  L +S +TVN +  +   K +A N+ Q    A+  G I
Sbjct: 190 WTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240


>gi|170769400|ref|ZP_02903853.1| regulatory protein SdiA [Escherichia albertii TW07627]
 gi|170121724|gb|EDS90655.1| regulatory protein SdiA [Escherichia albertii TW07627]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 78/235 (33%), Gaps = 13/235 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++    +E+   +    ++++   +  Y++      P  +  +    NY       
Sbjct: 2   LLRFQRMEVAEEVYHEIEHQAHQLE---YDFYSLCVRHPVPFTRPKVAFYTNYPEAWVRY 58

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L              +     +    Q             G+     L
Sbjct: 59  YQEKNFLAIDPAL-----NPENFRQGHLLWNDDLYREAQPLWEAARAHGLRRGVTHYFML 113

Query: 125 GFHKNGYVIFTSE---FLMLANEVI-IEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F+      + +  + + ++      + +   + L  +   +   + ++RE 
Sbjct: 114 PNRALGFLSFSRSSTREIPVPGDELQLKMQLLVRESLMALMRLNDEMVMTPEMHFSKREK 173

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K++A N+ Q    A   G I
Sbjct: 174 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 228


>gi|120612451|ref|YP_972129.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120590915|gb|ABM34355.1| transcriptional regulator, LuxR family [Acidovorax citrulli
           AAC00-1]
 gi|227167429|gb|ACP19743.1| LuxR-like protein [Acidovorax citrulli]
          Length = 242

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 72/231 (31%), Gaps = 9/231 (3%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPNI 67
           ++ +  EL          +  ++F+L  +    D        +    HNY          
Sbjct: 12  QALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPSRWVSHYIA 71

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D    H    + P  W+ +   +         +          G+  P+     
Sbjct: 72  RNYYLEDPVRRHAPQAMSPYRWKDV---SAQGDREAHIMDEATDAGLADGLGLPIHEPGG 128

Query: 128 KNGYVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           +       S   +               A + + T      + +   A  LT RE  CL 
Sbjct: 129 RIFLATVASHQQLTLGNDACVRTYALVTAFHALYTMRFATEQTQIPTAVKLTSREAECLT 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G +S EI   + +S HTVN +L +A  K D  +R+ A  +A   G I
Sbjct: 189 WVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239


>gi|76811685|ref|YP_334182.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 1710b]
 gi|124386221|ref|YP_001028861.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126450742|ref|YP_001081227.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10247]
 gi|167003830|ref|ZP_02269610.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|167720437|ref|ZP_02403673.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
 gi|167816634|ref|ZP_02448314.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167825038|ref|ZP_02456509.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
 gi|167846546|ref|ZP_02472054.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167895126|ref|ZP_02482528.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167903510|ref|ZP_02490715.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167919762|ref|ZP_02506853.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
 gi|242317090|ref|ZP_04816106.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254195948|ref|ZP_04902374.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|76581138|gb|ABA50613.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710b]
 gi|124294241|gb|ABN03510.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
 gi|126243612|gb|ABO06705.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10247]
 gi|169652693|gb|EDS85386.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|242140329|gb|EES26731.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|243060693|gb|EES42879.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
          Length = 237

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%)

Query: 3   ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           E+ L G   + S +E    +      +    F        + +P  +  I    N+    
Sbjct: 6   EDLLAGLDSARSEEEAFRSVETAAAALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 62

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L H      P++       +                    G A  
Sbjct: 63  KRRYVEAGFLDVDPILAHGRRSQQPVVLAETLFAS-----AHQMWVEAQSFGLRFGWAQS 117

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174
               +   G +        +    +              +  +   + L K  +   R L
Sbjct: 118 SFDAYGGMGMLALVRSREPVTAAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 176

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+ A DG TS EI++ L +SV TVN ++ +A +KL   N+  A+ +A   G +
Sbjct: 177 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|167739431|ref|ZP_02412205.1| LuxR family regulatory protein [Burkholderia pseudomallei 14]
 gi|167911761|ref|ZP_02498852.1| LuxR family regulatory protein [Burkholderia pseudomallei 112]
 gi|254191335|ref|ZP_04897839.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157939007|gb|EDO94677.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 237

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%)

Query: 3   ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           E+ L G   + S +E    +      +    F        + +P  +  I    N+    
Sbjct: 6   EDLLAGLDSARSEEEAFRSVETAAAALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 62

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L H      P++       +                    G A  
Sbjct: 63  KRRYVEAGFLDVDPILAHGRRSQQPVVLAETLFAS-----AHQMWVEAQSFGLRFGWAQS 117

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174
               +   G +        +    +              +  +   + L K  +   R L
Sbjct: 118 SFDAYGGMGMLALVRSCEPVTAAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 176

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+ A DG TS EI++ L +SV TVN ++ +A +KL   N+  A+ +A   G +
Sbjct: 177 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|222109223|ref|YP_002551488.1| two-component transcriptional regulator LuxR family [Agrobacterium
           vitis S4]
 gi|221738497|gb|ACM39362.1| two-component transcriptional regulator LuxR family [Agrobacterium
           vitis S4]
          Length = 240

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 73/223 (32%), Gaps = 4/223 (1%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           S+  L      +   I  R F  Y            +     + +     +    L    
Sbjct: 18  SVDNLFSDFGTV---IAKRGFHSYIYTGLPAVGDDVKHYVVKNAWPPGWTEQFEGLNYFA 74

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D       S   P  W++ +EET   +  +   +         GI FP+         +
Sbjct: 75  DDPVSRWSLSQSKPFTWKTAREETKATARTKEIQQEADRYRLCDGIVFPMFDPNSWQSVI 134

Query: 133 IFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
              ++    LA E I + +            L ++   A   LT+RE   LQ    G T 
Sbjct: 135 SLATDDKGGLAKENIGDLYLLSSYCAMTANNLLRRAEQADHRLTDREKEILQWVSRGKTD 194

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EI   L ++  +V   L      L   NR Q +++AIR G I
Sbjct: 195 WEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIRLGLI 237


>gi|254486014|ref|ZP_05099219.1| transcription regulator, LuxR family, putative [Roseobacter sp.
           GAI101]
 gi|214042883|gb|EEB83521.1| transcription regulator, LuxR family, putative [Roseobacter sp.
           GAI101]
          Length = 248

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 4/228 (1%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +++ S   +   +       + R  A  ++            I           +     
Sbjct: 15  RQADSPGAIWAIVQRYARAHEIRMIAYGSVEVQTYGETTFPGIQF--GMPTAFKESYIKE 72

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                +       S   P  W   Q+   ++ +    +        + GIAF V     +
Sbjct: 73  QLYLDNPLPRLAMSRPDPFYWSDAQDLDDLQPAEIAYLDKLKEAGIWPGIAFQVFGPESR 132

Query: 129 NGYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
           N  V    E     L+ + ++E   A       F  L     S    L+ RE   L+   
Sbjct: 133 NAAVGMCFEPGAPRLSPDALLELQLASQCAHQRFCALTDGPKSPYARLSPRELEVLRWIA 192

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++  +A+ +G+S HTV+        KL+  +R +A  + I  G +
Sbjct: 193 QGKSNSVMADIMGISRHTVDTITRRMFEKLEVTDRTRAAVRGISAGLL 240


>gi|218514308|ref|ZP_03511148.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 254

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 75/218 (34%), Gaps = 7/218 (3%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++   +  +    + R F +  +        +      + ++  +   + +         
Sbjct: 27  DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQG--NTVITSWPAELLALYDQEGLMVNSP 84

Query: 76  FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L    +   P  +   ++  +  +    L V L           FP        G V F
Sbjct: 85  VLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +    +   + E       V     E+    +     LT+RE  CL     G TS EI
Sbjct: 145 AGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           AE L LS HTVN YL  AT KLD VNR Q    A R G
Sbjct: 205 AEILVLSEHTVNHYLNRATKKLDTVNRTQ----ARRQG 238


>gi|304397142|ref|ZP_07379021.1| transcriptional regulator, LuxR family [Pantoea sp. aB]
 gi|304355291|gb|EFM19659.1| transcriptional regulator, LuxR family [Pantoea sp. aB]
          Length = 240

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 13/225 (5%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            +L P L      +    F  +        P  +  I     Y                D
Sbjct: 24  SDLKPLLQQFTESL---GFDYFAFLIQHPVPFSRPRIHLHSTYPKLWVKRYEKQNYYAVD 80

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             L         ++W                 R        +G +          G +  
Sbjct: 81  PVLSLCQRPGRGLMWTEEMFAGAGN-----LWREAREYGLQSGFSCSAMAPNRALGILSI 135

Query: 135 TSEFLML----ANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGY 189
           +S+  +       E+ ++ H      +              +   ++RE   L+  G+G 
Sbjct: 136 SSQQPIPLKLCHEELEVKLHLLAELSLDTLERFSDDAMMVLKKEFSQRELEILKWTGEGK 195

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+ EI+  L +S HTVN +  +   + +  N+ Q    A   G I
Sbjct: 196 TAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240


>gi|85707086|ref|ZP_01038174.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           217]
 gi|85668372|gb|EAQ23245.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           217]
          Length = 224

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 75/224 (33%), Gaps = 15/224 (6%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
               L  +++R +  + A   +N                 Y  D             D  
Sbjct: 7   FRQFLDDLRDRFELDHVAYAGMNPISGASHGHM------TYGEDWTAHYLQNKYYEIDPT 60

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L      + P+ W  ++          +        +   G+  P+   +   G +    
Sbjct: 61  LLKARHSIAPVDWHRLE---RGAEFQTIFRDARDFGISDRGLTIPIHGPYGDVGGLSINR 117

Query: 137 EFLMLANEVII-----EAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYT 190
           +       ++I     +   A   +    ++     R   + +L+ RE   LQ    G +
Sbjct: 118 DCSDREWHLLISEIIGDLQSAAVHMHDMVIQADPLTRMLNSPSLSTREIEILQWTAAGKS 177

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++I + L +S  TV  +L SA  KL+A+   QAI +AI  G I
Sbjct: 178 QQDIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221


>gi|190894996|ref|YP_001985289.1| transcriptional activator protein [Rhizobium etli CIAT 652]
 gi|190700657|gb|ACE94739.1| transcriptional activator protein [Rhizobium etli CIAT 652]
 gi|327193288|gb|EGE60194.1| transcriptional activator protein [Rhizobium etli CNPAF512]
          Length = 241

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 11/233 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
              S +LQ+L   L  +++     +  L+    A            +  Y  +       
Sbjct: 14  ISASPTLQDLETTLDEVRHIYAISHMVLHVTRFAG---ATDSNPLLMLTYPPEWVKQYRD 70

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  +     G LP+ W +   ++    +           +   G+  PVR    
Sbjct: 71  RDYFSIDPVVRLGRRGFLPVEWSASGWDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQG 128

Query: 128 KNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSC 181
           +      TS            + + +     + +    + L   ++ +    L+ RE  C
Sbjct: 129 ERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSGMRKVADLPRLSRRELQC 188

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L++  +G  +++I  +L +SV  V  YL SA  KL      +A+A+A     I
Sbjct: 189 LEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALELI 241


>gi|15598673|ref|NP_252167.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1]
 gi|116051496|ref|YP_789670.1| transcriptional regulator RhlR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890275|ref|YP_002439139.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58]
 gi|1710203|sp|P54292|RHLR_PSEAE RecName: Full=Regulatory protein rhlR; AltName: Full=Elastase
           modulator
 gi|9949621|gb|AAG06865.1|AE004768_10 transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1]
 gi|151538|gb|AAA25983.1| rhlR [Pseudomonas aeruginosa]
 gi|452505|gb|AAA62130.1| regulatory protein [Pseudomonas aeruginosa]
 gi|1117918|gb|AAC44036.1| RhlR [Pseudomonas aeruginosa PAO1]
 gi|115586717|gb|ABJ12732.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|161724881|emb|CAO85753.1| RhlR protein [Pseudomonas aeruginosa]
 gi|211908969|gb|ACJ12779.1| rhamnosyl transferase I [actinobacterium MSA10]
 gi|211908971|gb|ACJ12780.1| rhamnosyl transferase I [actinobacterium MSA19]
 gi|218770498|emb|CAW26263.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58]
 gi|281331824|emb|CBI71035.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331826|emb|CBI71036.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331828|emb|CBI71037.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331830|emb|CBI71038.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331832|emb|CBI71039.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331834|emb|CBI71040.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331836|emb|CBI71041.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331838|emb|CBI71042.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331840|emb|CBI71043.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|299772610|gb|ADJ38517.1| transcriptional regulator RhlR [Pseudomonas sp. BSFD5]
          Length = 241

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 10/220 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
             +   + +      +++  ++   F  Y        P  +        Y     +   +
Sbjct: 15  RSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQM 74

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  + +       ++W     +       ++            G   P+R   +
Sbjct: 75  QNYGAVDPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNN 129

Query: 128 KNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
               +    +   ++    E I        +++T  L   +     +    L+ RE   L
Sbjct: 130 LLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREIL 189

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           Q   DG +S EIA  L +S  TVN +  +   K DA N+ 
Sbjct: 190 QWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229


>gi|254242162|ref|ZP_04935484.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192]
 gi|126195540|gb|EAZ59603.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192]
          Length = 242

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 10/220 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
             +   + +      +++  ++   F  Y        P  +        Y     +   +
Sbjct: 15  RSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQM 74

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  + +       ++W     +       ++            G   P+R   +
Sbjct: 75  QNYGAVDPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNN 129

Query: 128 KNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
               +    +   ++    E I        +++T  L   +     +    L+ RE   L
Sbjct: 130 LLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREIL 189

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           Q   DG +S EIA  L +S  TVN +  +   K DA N+ 
Sbjct: 190 QWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229


>gi|83747411|ref|ZP_00944450.1| SolR [Ralstonia solanacearum UW551]
 gi|207744773|ref|YP_002261165.1| transcriptional activator protein solr [Ralstonia solanacearum
           IPO1609]
 gi|83725868|gb|EAP73007.1| SolR [Ralstonia solanacearum UW551]
 gi|206596183|emb|CAQ63110.1| transcriptional activator protein solr [Ralstonia solanacearum
           IPO1609]
          Length = 236

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            + ++       I +  +   F      + +  P  +  +     Y              
Sbjct: 13  RTAEDERQLFREIASIARQLGFDYCCYGARMPLPVSKPAVAIFDTYPAGWMQHYQANGFL 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +    S    I+W        I                  G+A          G 
Sbjct: 73  DIDPTVRAGASSGDMIVWP-----VSIRDEAARLWSDARDAGLNVGVARSSWTAHGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185
           +        L    +       H       T        +     N  LT RE   L   
Sbjct: 128 LTLARHADPLTAAELGRLSIATHWLANLAHTLMSPFLVPKLVPESNAVLTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G T+ EI + L +S  TVN ++ +  +KL A N++QA+ KAI  G I
Sbjct: 188 GEGKTAYEIGQILHISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236


>gi|107103010|ref|ZP_01366928.1| hypothetical protein PaerPA_01004079 [Pseudomonas aeruginosa PACS2]
 gi|152989609|ref|YP_001347033.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7]
 gi|150964767|gb|ABR86792.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7]
          Length = 224

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 10/214 (4%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +      +++  ++   F  Y        P  +        Y     +   +      
Sbjct: 4   IHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQNYGAV 63

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + +       ++W     +       ++            G   P+R   +    + 
Sbjct: 64  DPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNNLLSVLS 118

Query: 134 FTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDG 188
              +   ++    E I        +++T  L   +     +    L+ RE   LQ   DG
Sbjct: 119 VARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADG 178

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
            +S EIA  L +S  TVN +  +   K DA N+ 
Sbjct: 179 KSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 212


>gi|608485|gb|AAA89073.1| VSMR [Pseudomonas aeruginosa]
          Length = 241

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 10/218 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +   + +      +++  ++   F  Y        P  +        Y     +   +  
Sbjct: 17  EMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQN 76

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  + +       ++W     +       ++            G   P+R   +  
Sbjct: 77  YGAVDPAILNGLRSSEMVVWSDRLFD-----QSRMLWNEARDWGLCVGATLPIRAPNNLL 131

Query: 130 GYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQL 184
             +    +   ++    E I        +++T  L   +     +    L+ RE   LQ 
Sbjct: 132 SVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQW 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             DG +S EIA  L +S  TVN +  +   K DA N+ 
Sbjct: 192 TADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229


>gi|121663597|emb|CAM12356.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae]
          Length = 349

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 65/220 (29%), Gaps = 11/220 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++ +      H +    K   F        +  P  Q L+     Y              
Sbjct: 13  NTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNYI 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +    +    IIW                 R         G+A          G 
Sbjct: 73  EIDPTVRDGAASPNMIIWPDADAAEQPS-----LWRDARDFGMSVGVAQSSWAARGVFGL 127

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185
           +        L    I         +      L  +        +A+ +LT+RE   L   
Sbjct: 128 LTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKREREVLSWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +G T+ EI E+L +S  TV  ++ +   KL A N++QA+
Sbjct: 188 SEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAV 227


>gi|296388005|ref|ZP_06877480.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAb1]
 gi|313108838|ref|ZP_07794823.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa 39016]
 gi|310881325|gb|EFQ39919.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa 39016]
          Length = 234

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 10/220 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
             +   + +      +++  ++   F  Y        P  +        Y     +   +
Sbjct: 8   RSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQM 67

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  + +       ++W     +       ++            G   P+R   +
Sbjct: 68  QNYGAVDPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNN 122

Query: 128 KNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
               +    +   ++    E I        +++T  L   +     +    L+ RE   L
Sbjct: 123 LLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREIL 182

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           Q   DG +S EIA  L +S  TVN +  +   K DA N+ 
Sbjct: 183 QWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 222


>gi|92109527|ref|YP_571814.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802609|gb|ABE64982.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 228

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 76/226 (33%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +++ +  E+   L  +             + +        +       +     D  +  
Sbjct: 2   EQTRTAAEIEDCLLGLAAGFGFTGLFGGIVPTRPAPLAELRSRILFQRFPAQWLDRYSRK 61

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              + D  + H      P  W    E      + +L            G   P+     +
Sbjct: 62  GYVFRDPIIQHLFHERAPFTWHEGYESCPQRRNVRLIRGEAAEFGLRDGYVVPISTIDGE 121

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              + F     +  +  +   + A    +   L         + NLT RE  CL  AG+G
Sbjct: 122 IASLSFGGPGTLPVSADLSVLNFAASYALGRHLHRIATWQRVSSNLTAREWDCLLWAGEG 181

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+ E +  LG+S  TV  ++ +A  KL AV++  AIA AIR   +
Sbjct: 182 KTNWETSAILGISRSTVTKHIMAARAKLGAVSKAHAIATAIRTKLL 227


>gi|218460014|ref|ZP_03500105.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 198

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 66/195 (33%), Gaps = 9/195 (4%)

Query: 49  QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108
           +       +      I         D  + +      P  W+         +  +   ++
Sbjct: 3   RAAPLAGRWPERWLQIYAAKKYIRIDPMVRYLAHAQRPFRWRESMAAFNGSTHRRRMEQM 62

Query: 109 ---EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF- 164
                G     G  FP+       G +    + + L+   I        +     LEL  
Sbjct: 63  MVDAFGHGLEDGYLFPIHGRNGILGSLSLGGKPIELSPVEIALLEAVARKTFWRLLELTG 122

Query: 165 -----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                +    A   LT RE   L    +G TS EI++ L +S HTV+ Y+     KL A 
Sbjct: 123 EAEALETVLPAETPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAK 182

Query: 220 NRIQAIAKAIRFGYI 234
           NR QA+A A R G I
Sbjct: 183 NRQQAVALAFRHGLI 197


>gi|254690492|ref|ZP_05153746.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 6 str. 870]
          Length = 235

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++ +            +           
Sbjct: 11  QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPYLNGSLKWVRFGAFPDGWEQRYLAQ 67

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + + P+IW      +  +                 GI+ P       
Sbjct: 68  NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 123 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|34499545|ref|NP_903760.1| LuxR/UhpA family transcriptional regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|327200688|pdb|3QP6|A Chain A, Crystal Structure Of Cvir (Chromobacterium Violaceum
           12472) Bound To C6-Hsl
 gi|34332902|gb|AAQ61750.2| transcriptional activator, LuxR/UhpA family of regulators
           [Chromobacterium violaceum ATCC 12472]
          Length = 265

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 5/224 (2%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
             +  EL   L  I ++  +    L           ++       +Y  D  +  +    
Sbjct: 34  IETEGELKAFLDNILSQAPSDRIILVLGRLNNQNQIQRMEKVLNVSYPSDWLNQYSQENF 93

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKN 129
              D  +   + G  P+IW   +      S  +  +         +GI F       +  
Sbjct: 94  AQHDPIMR-IHLGQGPVIW-EERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRNNVG 151

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGD 187
             +    +       ++   +     +    + +      S +   L++RE         
Sbjct: 152 SILSIGGKEPGRNAALVAMLNCLTPHLHQAAVRIANLPPASPSNMPLSQREYDIFHWMSR 211

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G T+ EIA  L +S  TV  ++ +   KL+A NR  AI   +  
Sbjct: 212 GKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMHL 255


>gi|53725659|ref|YP_102421.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           ATCC 23344]
 gi|121600864|ref|YP_993677.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           SAVP1]
 gi|126442199|ref|YP_001059696.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|126451641|ref|YP_001066980.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134277810|ref|ZP_01764525.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|217421088|ref|ZP_03452593.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226200000|ref|ZP_03795550.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237813089|ref|YP_002897540.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238562977|ref|ZP_00439585.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|254177786|ref|ZP_04884441.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|254184304|ref|ZP_04890894.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1655]
 gi|254199322|ref|ZP_04905688.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|254205635|ref|ZP_04911987.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|254261005|ref|ZP_04952059.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254296964|ref|ZP_04964417.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|254357791|ref|ZP_04974064.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|52429082|gb|AAU49675.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 23344]
 gi|121229674|gb|ABM52192.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei SAVP1]
 gi|126221692|gb|ABN85198.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
 gi|126225283|gb|ABN88823.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|134251460|gb|EBA51539.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|147748918|gb|EDK55992.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|147753078|gb|EDK60143.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|148026918|gb|EDK84939.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|157806879|gb|EDO84049.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|160698825|gb|EDP88795.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|184214835|gb|EDU11878.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1655]
 gi|217396500|gb|EEC36517.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225928056|gb|EEH24093.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237504732|gb|ACQ97050.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238521581|gb|EEP85031.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|254219694|gb|EET09078.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
          Length = 241

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%)

Query: 3   ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           E+ L G   + S +E    +      +    F        + +P  +  I    N+    
Sbjct: 10  EDLLAGLDSARSEEEAFRSVETAAAALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 66

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L H      P++       +                    G A  
Sbjct: 67  KRRYVEAGFLDVDPILAHGRRSQQPVVLAETLFAS-----AHQMWVEAQSFGLRFGWAQS 121

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174
               +   G +        +    +              +  +   + L K  +   R L
Sbjct: 122 SFDAYGGMGMLALVRSREPVTAAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 180

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+ A DG TS EI++ L +SV TVN ++ +A +KL   N+  A+ +A   G +
Sbjct: 181 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240


>gi|256368654|ref|YP_003106160.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella microti CCM 4915]
 gi|255998812|gb|ACU47211.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella microti CCM 4915]
          Length = 235

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++              +           
Sbjct: 11  QSADSADQLFEIIKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 67

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + + P+IW      +  +                 GI+ P       
Sbjct: 68  NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 123 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|260756046|ref|ZP_05868394.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           6 str. 870]
 gi|260676154|gb|EEX62975.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           6 str. 870]
          Length = 238

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++ +            +           
Sbjct: 14  QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPYLNGSLKWVRFGAFPDGWEQRYLAQ 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + + P+IW      +  +                 GI+ P       
Sbjct: 71  NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 126 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|259415201|ref|ZP_05739123.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
 gi|259349111|gb|EEW60865.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
          Length = 239

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 87/239 (36%), Gaps = 27/239 (11%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            + S++L+E+   L   +N ++  +     ++ +         I       +   D  + 
Sbjct: 14  IESSANLEEIGEVLARFRNLLEVDHVFYRWVDRSGS-------ISGCSTLPVAWQDRYSA 66

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +     D  +    +   P+ W+ +     +  +           +   G + PVR    
Sbjct: 67  MGYHRIDPVVIGCYTAFHPVDWRDLDWSARL--AAAFRKDSLAFGVGSQGYSVPVRGPAG 124

Query: 128 ------------KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
                          +  FT +    + ++I+ AH    + +   +  +       + L+
Sbjct: 125 QYAVFSITKTCKGEVWDKFTRKH---SRDLILVAHYVNRRALDFEMSFY---PLPEQPLS 178

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE+  L L  +G +    AE + +S HT+  Y+  A  KL A N   A+A+A+  G I
Sbjct: 179 MRESEALSLLAEGMSRARAAEAMDISEHTLRVYIEGARSKLQAQNTTHAVARAVTMGLI 237


>gi|149203939|ref|ZP_01880907.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           TM1035]
 gi|149142381|gb|EDM30426.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           TM1035]
          Length = 224

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 74/225 (32%), Gaps = 17/225 (7%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
               L  ++NR +  + A   +N                 Y  D             D  
Sbjct: 7   FRQFLDDLRNRFELDHVAYAGMNPISGQSHGHM------TYGADWTSHYLQHKYYEIDPT 60

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFT 135
           L      + P+ W  +  E   E       +          G+  P+   +   G +   
Sbjct: 61  LLKARHSIAPVDWNRL--ERGAEFQTIF--QAARDFGISDRGLTIPIHGPYGDVGGLSIN 116

Query: 136 SEFLMLANEVIIE-----AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGY 189
            +      +++I         A   +    ++     R     +L+ RE   LQ    G 
Sbjct: 117 RDCSEREWQLLISGIIGNLQAAAVHMHDMVIQSDPLTRMLNTPSLSTREIEILQWTAAGK 176

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + ++I + L +S  TV  +L SA  KL+A+   QAI +AI  G I
Sbjct: 177 SQQDIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221


>gi|296156923|ref|ZP_06839760.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295892809|gb|EFG72590.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 234

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 68/231 (29%), Gaps = 13/231 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           ++   E    +  +          +  +        R +       Y        +    
Sbjct: 7   AADEAEWFGAIAGLAETWGFDKLLIAMLPRPT---IRLEDAYVRSTYSPIWRRTYDEQGL 63

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D  + H  +   P+IW     +    +S Q            AG+  P+     + G
Sbjct: 64  VHIDPTVSHCATRATPLIWS---PDIFTTASQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCLQ 183
            + F ++                  V+   L        L     +    LT RE  CL+
Sbjct: 121 MMCFVNDSNPSDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLK 180

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G ++ EI+  L  S   VN ++ +   K    +R  A   A + G I
Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231


>gi|53719957|ref|YP_108943.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52210371|emb|CAH36350.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|156105364|gb|ABU49181.1| BpsR5 [Burkholderia pseudomallei]
          Length = 241

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 17/240 (7%)

Query: 3   ENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           E+ L G   + S +E    +      +    F        + +P  +  I    N+    
Sbjct: 10  EDLLAGLDSARSEEEAFRSVETAAAALD---FEYCAYGLRVPWPLSRPRIETRSNFPEQW 66

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L H      P++       +                    G A  
Sbjct: 67  KRRYVEAGFLDVDPILAHGRRSQQPVVLAETLFAS-----AHQMWVEAQSFGLRFGWAQS 121

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNL 174
               +   G +        +    +              +  +   + L K  +   R L
Sbjct: 122 SFDAYGGMGMLALVRSCEPVTAAELDAKEYRMRWLVRTAHAALGRMM-LPKLMADPERGL 180

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+ A DG TS EI++ L +SV TVN ++ +A +KL   N+  A+ +A   G +
Sbjct: 181 TEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240


>gi|126724411|ref|ZP_01740254.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705575|gb|EBA04665.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 238

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 83/231 (35%), Gaps = 15/231 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +S++       +  +   +     +  T++           +    NY  +       + 
Sbjct: 14  QSNTSDNYLTFIDQLCEHMDFDFASYATMSPVTG------SVLGYANYPDEWKMHYMRMN 67

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +      + P+ W  +   +  ES   +  R     L   G+  PVR  F   
Sbjct: 68  LHRVDPTIHQSARSIAPVDWTRL---SRGESFNSVFYRANDFGLTDQGLTVPVRGPFGDV 124

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQ 183
           G +  T             + I E   A   +    ++     R+    +L+ RET  LQ
Sbjct: 125 GLLSVTRSCSEREWKLLTRDKISELQMAAVHLHDSVMQSDVLSRALRRPSLSARETEVLQ 184

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G T ++I + L +S  TV  ++ SA  KL A+  IQA+ +AI +  I
Sbjct: 185 WTAIGKTQQDIGDILSISHRTVEVHMRSAREKLGALTTIQAVGRAIGYQII 235


>gi|192290718|ref|YP_001991323.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192284467|gb|ACF00848.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 240

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 3/227 (1%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            +++ +   ++  L          +     I +     + Q     LH +          
Sbjct: 16  VERADTPDAVALALLAAVQVHGFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFS 75

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
               + D  +    S ++P  W  + +      +G   +          G   P+     
Sbjct: 76  KGYIFTDPAIRRVTSSMVPFSWTELWDHD--SPAGHRILGEAAEFGLKEGFTVPMVTLDG 133

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
            +  +        L   +                 L ++  +    LT RE   L    +
Sbjct: 134 HSAGLSIAGAMTELPPHLRGPVQMMAIYSFARAAHLRERPPAPV-TLTIREADVLHWIAE 192

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T  EIA  L +S H V+        K   VNR+QA+ +A+R G I
Sbjct: 193 GKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGVI 239


>gi|6716341|gb|AAF26601.1|AF110468_3 PsyR [Pseudomonas syringae pv. tabaci]
          Length = 246

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 16/230 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R      L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+    E          ++        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREA--ECCSGRRTDDFLKRSAKYQLSSGATFTLHDASWLFAALS 136

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I            A   L+ RET  L+ 
Sbjct: 137 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 196

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +  EIAE   +S  TV  ++ + + KL      QA+ KAI  G +
Sbjct: 197 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMGMV 246


>gi|218663810|ref|ZP_03519740.1| hypothetical protein RetlI_33506 [Rhizobium etli IE4771]
          Length = 253

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 64/236 (27%), Gaps = 13/236 (5%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL------ICELHNYDLD 60
               ++   +L   L        A NF +  +        R            + NY  +
Sbjct: 21  QADSAAQPDQLFDLLAAF-----ALNFDIPWVAYGPLAADRWAFKRVKYDPQVVLNYPDE 75

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                + +        +           W  +  +       +            +GI  
Sbjct: 76  WQKRCSEMAYDRVGPVVKESRKQRRAFQWSEVYNDVYTTEGERRIFDEAAAFGLRSGITV 135

Query: 121 PVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERE 178
           P+           F         N  I     A     +   +            L+ RE
Sbjct: 136 PLHGPDGSFAITSFAQHSSGQFQNRAISYLQLAALHFHSRVGKFADSNCIDEGAVLSGRE 195

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             C+     G +S +I   LG+S +TV+ ++ +   KLD  +R  A   A   G I
Sbjct: 196 RECIAWVARGKSSSDIGTILGISKNTVDFHIKNVMRKLDTASRTVAAITAATLGII 251


>gi|91779483|ref|YP_554691.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692143|gb|ABE35341.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 234

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 13/231 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           ++   E    +  +          +  +        R +       Y        +    
Sbjct: 7   AADEAEWFGTIAGLVETWGFEKLLIAMLPRPT---IRLEDAYVRSTYSPIWRRTYDEQGL 63

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D  + H  +   P+IW     +    +  Q            AG+  P+     + G
Sbjct: 64  VHIDPTVSHCATRATPLIWS---PDIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120

Query: 131 YVIFTS-EFLMLANEVIIEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQ 183
            + F +           I        ++ D         L     +    LT RE  CL+
Sbjct: 121 MMCFVNDSNPNDEFWQHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLK 180

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G ++ EI+  L  S   VN ++ +   K    +R  A   A + G I
Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231


>gi|208401188|gb|ACI26687.1| RhlR transcriptional regulator [Pseudomonas aeruginosa]
 gi|209171245|gb|ACI42868.1| RhlR [Pseudomonas aeruginosa]
          Length = 241

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 10/219 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
             +   + +      +++  ++   F  Y        P  +        Y     +   +
Sbjct: 15  RSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQM 74

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  + +       ++W     +       ++            G   P+R   +
Sbjct: 75  QNYGAVDPAILNGLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNN 129

Query: 128 KNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
               +    +   ++    E I        +++T  L   +     +    L+ RE   L
Sbjct: 130 LLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREIL 189

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           Q   DG +S EIA  L +S  TVN +  +   K DA N+
Sbjct: 190 QWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNK 228


>gi|99078080|ref|YP_611338.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035218|gb|ABF62076.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040]
          Length = 239

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 82/233 (35%), Gaps = 15/233 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            + S++L+E+   L   +N +   + +   ++ +         +           D  + 
Sbjct: 14  IESSANLEEIGEVLAQFRNLVDLDHVSYRWVDRSGS-------VSGCSTLPTAWQDRYSA 66

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +     D  +    +   P+ W+ +     + S+ +         +   G + PVR    
Sbjct: 67  MSYHRIDPVVIGCYTAFHPVDWRDLDWSARLASAYR--KDSIAFGVGNQGYSVPVRGPAG 124

Query: 128 KNGYVIFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSS-AARNLTERETSC 181
           +   +  T        +        +     + V    LE          + L+ RE+  
Sbjct: 125 QYAILSITKSCEGEVWDKFTQKHSRDLILLAHYVNRRALEFEVSYYPTPEQPLSMRESEA 184

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L  +G +    AE + +S HT+  Y+  A  KL A N   A+A+A+  G I
Sbjct: 185 LSLLAEGMSRARAAEAMAISEHTLRVYIEGARSKLQAQNTTHAVARAVTMGLI 237


>gi|213418834|ref|ZP_03351900.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 192

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 10/197 (5%)

Query: 43  DFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG 102
             P  +  I     Y                D  L   N     + W  +          
Sbjct: 1   PVPFTRPKISLRTTYPQAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EA 55

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVIT 158
           Q             G+   V L     G++ F+   L  ++    EV +       + ++
Sbjct: 56  QAMWDAAQRFGLRRGVTQCVMLPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLS 115

Query: 159 DFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               L      +     ++RE   L+   +G TS EIA  L +S +TVN +  +   K +
Sbjct: 116 ALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFN 175

Query: 218 AVNRIQAIAKAIRFGYI 234
           A N+ Q    A   G I
Sbjct: 176 APNKTQIACYAAATGLI 192


>gi|23501101|ref|NP_697228.1| LuxR family transcriptional regulator [Brucella suis 1330]
 gi|62289164|ref|YP_220957.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82699104|ref|YP_413678.1| transcriptional regulator LuxR family protein [Brucella melitensis
           biovar Abortus 2308]
 gi|163842459|ref|YP_001626863.1| transcriptional activator protein solR [Brucella suis ATCC 23445]
 gi|254694980|ref|ZP_05156808.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|254696612|ref|ZP_05158440.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254700994|ref|ZP_05162822.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 5
           str. 513]
 gi|254705366|ref|ZP_05167194.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 3
           str. 686]
 gi|254707120|ref|ZP_05168948.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254709336|ref|ZP_05171147.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis B2/94]
 gi|254713241|ref|ZP_05175052.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M644/93/1]
 gi|254716405|ref|ZP_05178216.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M13/05/1]
 gi|254731525|ref|ZP_05190103.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256030859|ref|ZP_05444473.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis M292/94/1]
 gi|256045980|ref|ZP_05448852.1| Transcriptional activator, LUXR family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256060329|ref|ZP_05450502.1| Transcriptional activator, LUXR family protein [Brucella neotomae
           5K33]
 gi|256112692|ref|ZP_05453613.1| Transcriptional activator, LUXR family protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|256158890|ref|ZP_05456740.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M490/95/1]
 gi|256254264|ref|ZP_05459800.1| Transcriptional activator, LUXR family protein [Brucella ceti
           B1/94]
 gi|256258748|ref|ZP_05464284.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260169762|ref|ZP_05756573.1| Transcriptional activator, LUXR family protein [Brucella sp. F5/99]
 gi|23346971|gb|AAN29143.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella suis 1330]
 gi|62195296|gb|AAX73596.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella abortus bv. 1 str. 9-941]
 gi|82615205|emb|CAJ10146.1| Bacterial regulatory protein, LuxR family:Autoinducer binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|163673182|gb|ABY37293.1| Transcriptional activator protein solR [Brucella suis ATCC 23445]
          Length = 235

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++              +           
Sbjct: 11  QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 67

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + + P+IW      +  +                 GI+ P       
Sbjct: 68  NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 123 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|300716150|ref|YP_003740953.1| regulatory protein [Erwinia billingiae Eb661]
 gi|299061986|emb|CAX59102.1| Regulatory protein [Erwinia billingiae Eb661]
          Length = 240

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 10/227 (4%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           ++ ++S    LI+ +  A  F  Y +      P  +  I    +Y               
Sbjct: 19  NVSDISEITALIEQQTLALGFDFYALYIRHPVPFTRPKIFIYSSYPKKWVSAYQKGNFAA 78

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D  + +       ++W        +   GQ            +G +          G +
Sbjct: 79  IDPVIENCQVPGKIVLWDE-----PLSRRGQKVFDAAKEYGIHSGFSACAMAKNRSIGIL 133

Query: 133 IFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGD 187
              S    E +ML  E  ++       ++    ++     S     L++RE   L+   +
Sbjct: 134 SMASGKTFEKIMLTPEKQLKLQYLSVLIMEALQQVKDISMSVMNMELSQRELEILKWTAE 193

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G TS EI+  L +S +TVN +      + +A N+ Q  + A   G +
Sbjct: 194 GKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQVASYAAAIGLL 240


>gi|17988041|ref|NP_540675.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1
           str. 16M]
 gi|161618178|ref|YP_001592065.1| transcriptional activator protein solR [Brucella canis ATCC 23365]
 gi|189023440|ref|YP_001934208.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225626726|ref|ZP_03784765.1| Transcriptional activator protein solR [Brucella ceti str. Cudo]
 gi|237814657|ref|ZP_04593655.1| Transcriptional activator protein solR [Brucella abortus str. 2308
           A]
 gi|260546462|ref|ZP_05822202.1| transcriptional activator [Brucella abortus NCTC 8038]
 gi|260563261|ref|ZP_05833747.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M]
 gi|260567174|ref|ZP_05837644.1| transcriptional activator [Brucella suis bv. 4 str. 40]
 gi|260759270|ref|ZP_05871618.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           4 str. 292]
 gi|260760992|ref|ZP_05873335.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260885067|ref|ZP_05896681.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           9 str. C68]
 gi|261215322|ref|ZP_05929603.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           3 str. Tulya]
 gi|261218189|ref|ZP_05932470.1| autoinducer-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261221416|ref|ZP_05935697.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94]
 gi|261314598|ref|ZP_05953795.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261316846|ref|ZP_05956043.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261320963|ref|ZP_05960160.1| autoinducer-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261324304|ref|ZP_05963501.1| autoinducer-binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261751515|ref|ZP_05995224.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261756080|ref|ZP_05999789.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3
           str. 686]
 gi|261759304|ref|ZP_06003013.1| transcriptional activator [Brucella sp. F5/99]
 gi|265987917|ref|ZP_06100474.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|265992391|ref|ZP_06104948.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265994134|ref|ZP_06106691.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265997378|ref|ZP_06109935.1| autoinducer-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|297247581|ref|ZP_06931299.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
 gi|17983788|gb|AAL52939.1| transcriptional activator, luxr family [Brucella melitensis bv. 1
           str. 16M]
 gi|161334989|gb|ABX61294.1| Transcriptional activator protein solR [Brucella canis ATCC 23365]
 gi|189019012|gb|ACD71734.1| Transcriptional activator, LUXR family [Brucella abortus S19]
 gi|225618383|gb|EEH15426.1| Transcriptional activator protein solR [Brucella ceti str. Cudo]
 gi|237789494|gb|EEP63704.1| Transcriptional activator protein solR [Brucella abortus str. 2308
           A]
 gi|260096569|gb|EEW80445.1| transcriptional activator [Brucella abortus NCTC 8038]
 gi|260153277|gb|EEW88369.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M]
 gi|260156692|gb|EEW91772.1| transcriptional activator [Brucella suis bv. 4 str. 40]
 gi|260669588|gb|EEX56528.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           4 str. 292]
 gi|260671424|gb|EEX58245.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260874595|gb|EEX81664.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           9 str. C68]
 gi|260916929|gb|EEX83790.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           3 str. Tulya]
 gi|260920000|gb|EEX86653.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94]
 gi|260923278|gb|EEX89846.1| autoinducer-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261293653|gb|EEX97149.1| autoinducer-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296069|gb|EEX99565.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261300284|gb|EEY03781.1| autoinducer-binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261303624|gb|EEY07121.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261739288|gb|EEY27284.1| transcriptional activator [Brucella sp. F5/99]
 gi|261741268|gb|EEY29194.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261745833|gb|EEY33759.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3
           str. 686]
 gi|262551846|gb|EEZ07836.1| autoinducer-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|262765115|gb|EEZ11036.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|263003457|gb|EEZ15750.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|264660114|gb|EEZ30375.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|297174750|gb|EFH34097.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
          Length = 238

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++              +           
Sbjct: 14  QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + + P+IW      +  +                 GI+ P       
Sbjct: 71  NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 126 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|7385146|gb|AAF61717.1|AF232768_2 acylhomoserine lactone dependent transcriptional activator
           [Pseudomonas fluorescens]
          Length = 242

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 61/216 (28%), Gaps = 15/216 (6%)

Query: 28  IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI 87
           ++  ++A +      +          + NY                D  + H      P 
Sbjct: 33  LQGASYAYFAAPRNREVA-----PLIVSNYPARWLKAYKNANYHLIDPIIHHGLKSCAPF 87

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
            W    +    E S +L  R         G  F +         +   +       E  +
Sbjct: 88  SWSDALQAAPCERSRELFRRS-SQYRICTGATFTLHDAGGMFSSLSLCNSGPQAEFERRM 146

Query: 148 E-----AHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
                    A  +     L L              L+ RE   L+    G    EIA   
Sbjct: 147 ADQQGHLQMALIRFHGRLLSLRAMDELFPEPQTGPLSARELGVLKWVMMGKAYREIAVIC 206

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S  TV  ++ + + KL   N  QA+ +A R G +
Sbjct: 207 AISERTVKFHMSNISGKLQVCNAKQAVYEAQRQGIL 242


>gi|330973884|gb|EGH73950.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 247

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 19/230 (8%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           +++    LH I +      +A ++                L NY                
Sbjct: 28  IEDFENDLHRIGDFT----YAYFSSPKTRTV-----KPVILSNYPDSWLKSYIASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARHAIQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQL 184
             +       +  I     +   +  +                      L+ RE   L+ 
Sbjct: 138 LCNARQQTDFDQRIRDKAADIQMSLIRFHDRLTRTQAPHELFPQPTRCKLSSREIGVLKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G    EIAE   +S  TV  ++ + + KL+     QA+ KAI  G +
Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|270261276|ref|ZP_06189549.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044760|gb|EFA17851.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 238

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 12/214 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S+ +    L  ++   +A  F  Y+      +P  +  +    NY  +  +    L   
Sbjct: 14  DSVHDRELFLRRLEPCAQALGFEYYSYIVFSCYPASRPKMLIEGNYPAEYLEDYRKLRVY 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +   +   L   W     +   E    L  R+        G +  ++  + + G 
Sbjct: 74  LQDPVIDQAHHSTLQFHWDEEFYQDRPE----LWWRMAQ-FGIREGWSQSIKDCYGRLGI 128

Query: 132 VIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA--RNLTERETSCLQL 184
           + F  + +   +      +                E     +  A    LT RE   L+ 
Sbjct: 129 LTFAGKKIPEQSPEAGARNETFFLWLAQIAHKTLREALISVNDEAIKDVLTLREKDILRW 188

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             +G TSEEIA  +GLS  TVN ++G++  KL  
Sbjct: 189 CSEGKTSEEIAMLMGLSERTVNFHIGNSIKKLSV 222


>gi|254718404|ref|ZP_05180215.1| Transcriptional activator, LUXR family protein [Brucella sp. 83/13]
 gi|306840172|ref|ZP_07472955.1| LuxR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306844457|ref|ZP_07477047.1| LuxR family transcriptional regulator [Brucella sp. BO1]
 gi|306275270|gb|EFM57020.1| LuxR family transcriptional regulator [Brucella sp. BO1]
 gi|306404737|gb|EFM61033.1| LuxR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 235

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++              +           
Sbjct: 11  QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 67

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + + P+IW      +  +                 GI+ P       
Sbjct: 68  NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 123 FGLLSFVRTGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|1730567|sp|P54303|PHZR_PSECL RecName: Full=Transcriptional activator protein phzR
 gi|496217|gb|AAA21841.1| positive regulatory protein [Pseudomonas chlororaphis subsp.
           aureofaciens]
          Length = 241

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 71/226 (31%), Gaps = 13/226 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           ++     +    ++   F  +        P  +       NY  D             D 
Sbjct: 22  DMQEFTAVALRALRELRFDFFRYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANYAVIDP 81

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H      PI+  +       +                 G+A P      + G +   
Sbjct: 82  TVKHSKVSSSPILASNELFRGCPD-----LWSEANDSNLRHGLAQPSFNTQGRVGVLSLA 136

Query: 136 SEFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSCLQLAGDG 188
            +   ++ +   EA     +            LE   +  +     + RE   L+   DG
Sbjct: 137 RKDNPISLQE-FEALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADG 195

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TSEEI   +G+   TVN +  +   K+ A NR+QA   A+  GYI
Sbjct: 196 KTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQASRYAVAMGYI 241


>gi|91976651|ref|YP_569310.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91683107|gb|ABE39409.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 3/227 (1%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            +++ +   ++  L          +     I +     + Q     LH +          
Sbjct: 16  VERADTPDAVALALLAAVQVHGFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFS 75

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
               + D  +    S ++P  W  + +      +G   +          G   P+     
Sbjct: 76  KGYIFTDPAIRRVTSSMVPFSWTELWDHD--SPAGHRILGEAAEFGLKEGFTVPMVTLDG 133

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
            +  +        L   +                 L ++  +    LT RE   L    +
Sbjct: 134 HSAGLSIAGAITELPPHLRGPVQMMAIYSFARAAHLRERPPAPV-TLTIREADVLHWIAE 192

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T  EIA  L +S H V+        K   VNR+QA+ +A+R G I
Sbjct: 193 GKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGVI 239


>gi|225851721|ref|YP_002731954.1| transcriptional activator protein solR [Brucella melitensis ATCC
           23457]
 gi|265999658|ref|ZP_06111771.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9]
 gi|225640086|gb|ACN99999.1| Transcriptional activator protein solR [Brucella melitensis ATCC
           23457]
 gi|263095176|gb|EEZ18845.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9]
          Length = 238

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++              +           
Sbjct: 14  QSADSADQLFGIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + + P+IW      +  +                 GI+ P       
Sbjct: 71  NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 126 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|265983368|ref|ZP_06096103.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13]
 gi|264661960|gb|EEZ32221.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13]
          Length = 238

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++              +           
Sbjct: 14  QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + + P+IW      +  +                 GI+ P       
Sbjct: 71  NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 126 FGLLSFVRTGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|238026711|ref|YP_002910942.1| acylhomoserine lactone dependent transcriptional activator
           [Burkholderia glumae BGR1]
 gi|237875905|gb|ACR28238.1| Acylhomoserine lactone dependent transcriptional activator
           [Burkholderia glumae BGR1]
          Length = 241

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 64/206 (31%), Gaps = 11/206 (5%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           FA   I+         +L C L +Y +              D  + H    + P  W   
Sbjct: 36  FAYVMIDK-----NSLELGCFLSSYPIRLQQEYRRRALHRVDPVVLHAIQSVAPFSWAEA 90

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE---- 148
             +  +    +    L        G  F V   +   G + F +          IE    
Sbjct: 91  FRQQRVPDPSEFDA-LRREFGLHDGYVFTVHDPYQYVGMLSFFNRGGRPEFRAEIERVKG 149

Query: 149 -AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               A     +              +LT RE + L+ A  G +  EIA+  G+   TV  
Sbjct: 150 AMQLALVLFHSRINAKPPDSRHRVESLTLRERTVLKWAAMGKSYSEIADICGIRERTVKY 209

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ +   KLD     QA+  A R G 
Sbjct: 210 HMANVVQKLDVSTAKQAVIVASRLGL 235


>gi|83594724|ref|YP_428476.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577638|gb|ABC24189.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 260

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 72/237 (30%), Gaps = 13/237 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +  +   + +    L+        F     +         +L   LHNY     +     
Sbjct: 14  EALNGTSDSADLTTLLTGTFARLGFPHSCYHVVRLEGAGARLPYVLHNYKDSWSEHYFRE 73

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L       LP +W        +    +             G + P+R    +
Sbjct: 74  GFLEIDPVLATCPDRQLPFLWSEAIAPESLSHDQRRMFSDARDAGLHDGYSVPIRGSHGE 133

Query: 129 NGYVIFTSEFLMLANEVII-----EAHGACYQVITDFL------ELFKKRSSAARNLTER 177
              V    E    A   +I       H                  L  +R      L+ R
Sbjct: 134 FATVTVIPEQGGDAARRLIGEQKHLVHLLALYFDRHARSTVINARLSSRRRKTV--LSPR 191

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+ A  G TS EIAE  G+S  +V  +L +A  KL   ++  A+ KA+  G +
Sbjct: 192 EQEMLRWAALGKTSWEIAEIAGISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLGLV 248


>gi|66044867|ref|YP_234708.1| LuxR transcriptional regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|33413265|emb|CAD97431.1| AHL regulator [Pseudomonas syringae pv. syringae]
 gi|63255574|gb|AAY36670.1| regulatory protein, LuxR:Autoinducer-binding [Pseudomonas syringae
           pv. syringae B728a]
          Length = 247

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 19/230 (8%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           +++    LH I +      +A ++                L NY                
Sbjct: 28  IEDFENDLHRIGDFT----YAYFSSPKTRTV-----KPVILSNYPDSWLKSYIASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARHAIQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQL 184
             +       +  I     +   +  +      +               L+ RE   L+ 
Sbjct: 138 LCNARQQTDFDQRIRDKAADIQMSLIRFHDRLTKTQAPHELFPQPTRCKLSSREIGVLKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G    EIAE   +S  TV  ++ + + KL+     QA+ KAI  G +
Sbjct: 198 VAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|50956580|gb|AAT90827.1| acylhomoserine lactone dependent transcriptional activator
           [uncultured proteobacterium QS1]
          Length = 223

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 14/227 (6%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           EL+P L    + +   N++ Y +  +     +      + NY  D   +         D 
Sbjct: 3   ELAPSLENALSCLGEFNYSYYVVRKS-----KNTKPIIVSNYPDDWLMLYEARSYHLYDP 57

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + +      P  W   Q     +   +L  +        +G  F +         +   
Sbjct: 58  VINYGMRRFAPFSWCDAQASDTADIGKELF-QSAEKYQISSGFTFVLHDAAELFASLSVC 116

Query: 136 SEFLMLANEVI-----IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGD 187
                            E   A        L    + +     A  L+ RE   LQ  G 
Sbjct: 117 RSGRGSDFGQRVADHSAEIQMALINFHDHILSTQTVDELFPLPANLLSAREIEILQWVGK 176

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G    E+A    +S HTV  ++   + KL+ +N  QA+ +AIR G I
Sbjct: 177 GKAYFEVAIICAISEHTVKFHISKISTKLNVLNAKQAVYEAIRRGII 223


>gi|261855565|ref|YP_003262848.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836034|gb|ACX95801.1| transcriptional regulator, LuxR family [Halothiobacillus
           neapolitanus c2]
          Length = 237

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 13/234 (5%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
             +  S +        I++   A  F        L+     Q +  ++NY  +       
Sbjct: 9   VSQIQSAENEESAFKKIEDEALALGFENAAYGLRLNLNITNQKVVMMNNYSQNWKRRYTD 68

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  + H N  L+P++W        I  +               G +        
Sbjct: 69  ENYISIDPVVKHGNKSLMPVVWS----SNKITENKNF-WEDAYSHNLKYGWSQASADQVG 123

Query: 128 KNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETS 180
           + G +  T     ++   + E            +  +++ +   KK       LT RE  
Sbjct: 124 RRGLLTLTRGHEPISELELKELQYRLTWLTQISHHCMSEIIT-TKKMPETMITLTMREKD 182

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+    G TS E +  + ++  TVN ++ ++  KL+ +N+  A  +A   G +
Sbjct: 183 VLRWTAAGKTSGETSTIMNITERTVNFHIANSMQKLNCINKTSATVRAAMLGLL 236


>gi|299529754|ref|ZP_07043189.1| transcriptional regulator, luxR family protein [Comamonas
           testosteroni S44]
 gi|298722272|gb|EFI63194.1| transcriptional regulator, luxR family protein [Comamonas
           testosteroni S44]
          Length = 239

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 9/231 (3%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           L  + + SL  +   +  +   +    F L++ +SA D    +++     ++      + 
Sbjct: 14  LAIEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARD-DAVERIYWIEGDWFGTGAPVD 72

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRL 124
                        H      P  W          + G+    +     P   G+  PV  
Sbjct: 73  AE-TYVRHCPVTRHILETNQPFFWT-----KTNGAQGERYSVVRAPQGPGIHGLQVPVFG 126

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQ 183
                G +    E +  + +  +               L +         L++RE   L 
Sbjct: 127 LLGLEGAMSLGGERIDASPQARLALELIAQTAFRTARRLLELPAQEELGPLSDREREVLA 186

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G    EIA  LGLS  TV  +L     +L      QAI  AIR G I
Sbjct: 187 WTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRMAIRNGEI 237


>gi|182375406|emb|CAQ15951.1| vR protein [Pseudomonas fuscovaginae]
          Length = 239

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 10/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +       +   ++   ++        +   +      + N+     D+ +    +  D 
Sbjct: 15  DARTWFQSLVLSVQKLGYSQVLYALKPNKEAQNSTARIMSNFPDAWRDLYDNENYSSIDP 74

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H  S  LPI+W+    +       +             G+  P+     + G +  +
Sbjct: 75  VVSHSFSSSLPILWEDKLYK---TRREKEFAEDARRAGLSHGLTLPIHGPQGQVGMLSLS 131

Query: 136 ------SEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDG 188
                 +E+L +    I  A       +T    LF    SS A +LT RE   L  A   
Sbjct: 132 CAPMPQNEYLQVLQHSIAAASMLRDYAVTSGSSLFLHNSSSTAPHLTPRELEILHWAWAE 191

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            T+ EI + L L+  TV  +  +   KL+  +R  A+A+AI+   
Sbjct: 192 KTTWEIGKILSLAEPTVEFHFKNIRRKLNVSSRRLAVARAIQLDL 236


>gi|171320496|ref|ZP_02909525.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171094259|gb|EDT39337.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 234

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 9/215 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           + +   A      T      FP   + I  + N  +   +          D         
Sbjct: 25  LTHAASALGLEYATYAMRRPFPICNRQIVMVSNCPVRWRERYIDAQFINIDPVFKAAIGS 84

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
             P++W +        +S               G +   R      G +  +     +  
Sbjct: 85  DEPVVWSA-----QHGASRSRFWDEALSFGIAHGWSSVSRGADGTLGILTLSRSSDPIEP 139

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLG 199
              I      + +             A       LT+RET  L+   DG T+ EI+  L 
Sbjct: 140 AEKILNQSTVHWLAHAAHLAMAPFLPAGDEFDPTLTQRETDVLKWTADGKTAYEISLILS 199

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TVN ++ +   KL   N++ A+AKA   G +
Sbjct: 200 ISESTVNFHVKNIVAKLGTANKVHAVAKAALMGML 234


>gi|260777849|ref|ZP_05886742.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605862|gb|EEX32147.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 240

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +   S++ +   L  + + + +     + +  + D   +      + N+  D  +    L
Sbjct: 12  QTIDSIESMGRLLEQLNHIVNSE---YFVLGVSFDPHIKNGRFIVVDNFPADCREDSCNL 68

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              Y D       S  +P +W    ++  I S    S  L        GI+ P+     +
Sbjct: 69  GLMYVDPICKFGASNCMPSVW-ESSKQIDIHSQELFS--LSHIQGIEQGISIPIHGLNGE 125

Query: 129 NGYVIFTSEFL---MLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183
            G + F +  +       +V++ A      ++ +   L     +      LT RE  CL 
Sbjct: 126 VGMLSFATSDVIAYPTHTDVLLFAQLIVPLIVQNLSRLSHASQTEHSQAMLTNREIQCLT 185

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A DG ++ EIA+ +  +  TV  +L +A  KL A NR QA+ +A+  G+I
Sbjct: 186 WAADGKSASEIADIVDCTERTVKFHLSNACKKLGATNRCQAVTRALLGGHI 236


>gi|209518837|ref|ZP_03267650.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209500722|gb|EEA00765.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 269

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 13/231 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +++  E    +  +          +  +                  Y        +    
Sbjct: 42  AANEAEWFGVITGLSETWGFDRILVAMLPRPTMRLE---DAYLRSTYAPAWRQAYDEQGM 98

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D  + H  S   P+IW     E     + Q            AG+  P+     + G
Sbjct: 99  VHFDPTVAHCLSRSGPLIWT---PEIFATPAQQSLYEEARSYGLGAGVTLPIHGPNQEAG 155

Query: 131 YVIFTSEFLMLA-NEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQ 183
            + F ++          + A      ++ D +       L     +    LT RE  CL+
Sbjct: 156 MMCFVNDDKPSDGFRRHVNAALPNLVLLRDLVIDTSRQHLNSHAQTLLPKLTPRERECLK 215

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G ++ EI+  L  S   VN ++ +   K    +R  A   A + G I
Sbjct: 216 WTARGKSTWEISHILSCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 266


>gi|86361169|ref|YP_473056.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86285271|gb|ABC94329.1| transcriptional regulator (activator) protein, LuxR family
           [Rhizobium etli CFN 42]
          Length = 241

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 83/233 (35%), Gaps = 11/233 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
              S +LQ+L   L  +++     +  L+ +  +        L+     Y  +       
Sbjct: 14  ISASPTLQDLETALDEVRHIYAISHMVLH-VTRSSGATVSNPLLML--TYPPEWVKQYRD 70

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  +     G LP+ W + + ++    +           +   G+  PVR    
Sbjct: 71  RDYFSIDPVVRLGRRGFLPVEWSASKWDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQG 128

Query: 128 KNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFK-KRSSAARNLTERETSC 181
           +      TS              + +     + +    + L   +  +   +L+ RE  C
Sbjct: 129 ERSLFTVTSNHPDAYWRQFRMDCMRDLQFLAHHLHDRAMVLAGMREIADVAHLSRRELQC 188

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L++   G+ +++I+ +L +S+  V  YL SA  KL      +A+AKA     I
Sbjct: 189 LEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALELI 241


>gi|66047443|ref|YP_237284.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63258150|gb|AAY39246.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 254

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S+L +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W  +        T I    +  VR      
Sbjct: 65  ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYLPRAETVLKTFITDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +       +    ++   +A     + + E     +        LF +  
Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKI 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV TV  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|193890916|gb|ACF28617.1| quorum sensing regulator [Mesorhizobium tianshanense]
          Length = 275

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 74/242 (30%), Gaps = 12/242 (4%)

Query: 1   MSENTLTGKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNY 57
           MS    T ++   L +   +   L  I  R   +  A       LD    +Q       Y
Sbjct: 34  MSGLDATLEEIGQLGDAEKIPALLQRIAERYGLKTVAYLG-TGTLDRRVPRQEPFIAVTY 92

Query: 58  DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117
             +  +          D  +      LLPI W    +                  L   G
Sbjct: 93  PPEWVERYRARGYINIDPAIQIGLRRLLPIDWDEFGKAEGDLRQ--FFGEASEFGLGLRG 150

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAAR 172
           I+FPV            T++F                      +    L        +  
Sbjct: 151 ISFPVHGCGGDRALFSVTADFSKREWHWARRTAFRHFPIIAAHLHEAVLRTD-GVFRSQP 209

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE  CL+   +G T  E    LGLS HTV  YL SA  KL A +   A + A + G
Sbjct: 210 RLSPRELECLRWTSEGKTVWECGVILGLSPHTVRCYLESARHKLGASSNTHAASLATKSG 269

Query: 233 YI 234
            +
Sbjct: 270 LL 271


>gi|206562058|ref|YP_002232821.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
 gi|198038098|emb|CAR54046.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
          Length = 237

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 10/209 (4%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F           P  +  +  + N+  +             D  +    S   P++W 
Sbjct: 33  LGFRYCVYGLRRTLPLARPDMQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWN 92

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
           +       E                 G +          G +    +   L  + I    
Sbjct: 93  AFD-----EPGDTAFWHDAACFGMRYGWSHGGYDRAGNLGVLTLVRDTTPLDADEISRLR 147

Query: 151 G----ACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                  +      +  L    +     LT RE   L    DG T+ EI    G++  TV
Sbjct: 148 APCASLSHAAHAYLMPRLADPIAPVGTGLTLREREVLAWTADGKTAYEIGMIFGIAERTV 207

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L +A VKLDA+N+  A  KA   G +
Sbjct: 208 KFHLQNAVVKLDAMNKTHAATKAAMLGLL 236


>gi|85376480|gb|ABC70477.1| acylhomoserine lactone-dependent transcriptional regulator
           [Pseudomonas sp. M18]
          Length = 215

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 10/208 (4%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
              +++  ++   F  Y        P  +        Y     +   +      D  + +
Sbjct: 1   VFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQNYGAVDPAILN 60

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                  ++W     +       ++            G   P+R   +    +    +  
Sbjct: 61  GLRSSEMVVWSDSLFD-----QSRMLWNEARDWGLCVGATLPIRAPNNLLSVLSVARDQQ 115

Query: 140 MLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEI 194
            ++    E I        +++T  L   +     +    L+ RE   LQ   DG +S EI
Sbjct: 116 NISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADGKSSGEI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           A  L +S  TVN +  +   K DA N+ 
Sbjct: 176 AIILSISESTVNFHHKNIQKKFDAPNKT 203


>gi|90420983|ref|ZP_01228887.1| possible transcriptional regulator, lysR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334761|gb|EAS48537.1| possible transcriptional regulator, lysR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 294

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 85/219 (38%), Gaps = 2/219 (0%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
            L+  L  +       + A+ ++ S  D     +L   L N+    G     L       
Sbjct: 77  ALTQLLGDVATDFGFSHAAVLSVPSTDDGGTATRL--LLSNWSESFGQAYEQLGLHRSKL 134

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +    +  +P +W         E     + R+       AG  FPV      NG + F 
Sbjct: 135 VVGALKTDPMPFVWDIDTLYGADEPDPSPAARMLMEAEYLAGAFFPVHGLTAFNGALSFA 194

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                L  E I E H   + +         + +     L+ RE  CL+LA  G TS EI 
Sbjct: 195 GRSCALPAEAIRELHLFAFALFGMLAAARFEENRRNNPLSVRERDCLKLAMLGKTSSEIG 254

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L LS +T++ YL +A  KLDA NR  A+A A + GY+
Sbjct: 255 IILSLSEYTISQYLTAAQRKLDASNRTHAVALAAQLGYL 293


>gi|316933442|ref|YP_004108424.1| autoinducer-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315601156|gb|ADU43691.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 239

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 4/224 (1%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + + + ++  L                + S       Q     +  +        +    
Sbjct: 19  APTSEAVADILLASVRSFGFTKVVAGVVPSPQVSAEEQLSNVLMSRWPAAWSRRYSSKGY 78

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +    S +    W  +   + +  + +  +          G   P+     +  
Sbjct: 79  LTEDPTIQRVRSSIEAFEWSEL---SAVSIAARNIMEEAADFGLNHGFTVPLHTLDGEYA 135

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +    +   L                   +   K+  +A+  LT RE   L    +G T
Sbjct: 136 ALSIAGDRCELPASFRGVVQLMATYAFAKAI-GQKRAINASPRLTIREADVLHWIAEGKT 194

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             EI++ LG+S H V+        K  AVNR+Q I+ A+R G I
Sbjct: 195 DWEISQILGVSEHLVDKVARQLKDKFGAVNRVQMISCAMRLGVI 238


>gi|270341116|emb|CAQ15948.2| vR protein [Pseudomonas fuscovaginae]
          Length = 239

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 73/226 (32%), Gaps = 10/226 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +       +    +   ++        +   +      + N+  D     +    +  D 
Sbjct: 15  DARTWFESLVFSARKLGYSKVLYALKPNKEAQNNAAEIMSNFPDDWRRRYDNENYSIIDP 74

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF- 134
            +FH  S  LPI W+    +T      +             G+  P+     + G +   
Sbjct: 75  TVFHSFSSSLPIPWEDKLYKTQ---KEKEFAEEARWAGLSHGMTLPIHGPQGQVGMLSLS 131

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQLAGDG 188
                    +  ++       ++ D+          +     A +LT RE   L  A   
Sbjct: 132 CDPMSEPEYQKTLKNSLGAATLLRDYAVTSSFNHFQQGSGYTAPHLTPRELEILHWAWAE 191

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+ EI + L LS  TV  +  +   KL   +R  A+A+AI+   I
Sbjct: 192 KTTWEIGKILSLSEPTVEFHFKNIRRKLKVTSRRLAVARAIQLDLI 237


>gi|299065227|emb|CBJ36393.1| Transcriptional activator protein solR [Ralstonia solanacearum
           CMR15]
          Length = 236

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 75/229 (32%), Gaps = 13/229 (5%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           + Q+       I + ++   F        +  P  +  +     Y               
Sbjct: 14  TAQDERQLFRQIASVVRQLGFDYCCYGIRVPLPVSKPAVAIFDTYPAGWMAHYQASGFLE 73

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D  +    S    I+W        I                  G+A          G +
Sbjct: 74  VDPTVRAGASSSDLIVWP-----VSIRDEAARLWSDARDFGLNVGVARSSWTAHGAFGLL 128

Query: 133 IFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                   L+   +              + +++ FL + K    ++  LT RE   L   
Sbjct: 129 TLARGADPLSAAELEQLSATTNWLANLAHALMSPFL-MPKLVPESSAALTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G T+ EI + L +S  TVN ++ +  +KL A N++QA+ KAI  G I
Sbjct: 188 GEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236


>gi|107027317|ref|YP_624828.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691286|ref|YP_836819.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170736675|ref|YP_001777935.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105896691|gb|ABF79855.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116649286|gb|ABK09926.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169818863|gb|ACA93445.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 237

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 10/209 (4%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F           P  +  +  + N+  +             D  +    S   P++W 
Sbjct: 33  LGFRYCVYGLRRTLPLARPDLQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWN 92

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
           +       E                 G +          G +    +   L  + I    
Sbjct: 93  AFD-----EPGDTAFWHDAACFGMRYGWSHGGYDRAGNLGVLTLVRDTTPLDADEISRLR 147

Query: 151 G----ACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                  +      +  L    +     LT RE   L    DG T+ EI    G++  TV
Sbjct: 148 APCASLAHAAHAYLMPRLADPIAPVGTGLTLREREVLAWTADGKTAYEIGMIFGIAERTV 207

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L +A VKLDA+N+  A  KA   G +
Sbjct: 208 KFHLQNAVVKLDAMNKTHAATKAAMLGLL 236


>gi|104781941|ref|YP_608439.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110928|emb|CAK15646.1| putative transcriptional regulator, luxR family [Pseudomonas
           entomophila L48]
          Length = 235

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 75/230 (32%), Gaps = 9/230 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             +++++L  +   +  +   +    F L++ N+A D    +++     ++  D   +  
Sbjct: 12  QIEQATTLALIQSAVRSVARPLGYDRFVLFSANAARD-EVVERIHWVEGDWFGDGLRVD- 69

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL-PFAGIAFPVRLG 125
                       H  +   P  W   +        G+    +   +     G+  PV   
Sbjct: 70  AQTYIRHCPVNRHLLTAREPFFWSKRE-----GEGGERYHVVRAPVGTGVHGLQVPVFGP 124

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184
               G +      +  +    +               L +         L+ERE   L  
Sbjct: 125 AGLEGAMSLGGLHIDASPATRMCLALLANAAFHAARRLLEAPVGQEVGVLSERERQVLAW 184

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G    +IA  LGLSV TV  +L +A  +L      QAI  A+  G +
Sbjct: 185 TAAGQRQADIAATLGLSVRTVENHLRAARRRLGVATTAQAIRIALGSGVL 234


>gi|77463693|ref|YP_353197.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462526|ref|YP_001043640.1| autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639538|ref|YP_002525800.1| Autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332558550|ref|ZP_08412872.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N]
 gi|2360976|gb|AAC46021.1| autoinducer sythesis regulator [Rhodobacter sphaeroides]
 gi|77388111|gb|ABA79296.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126104190|gb|ABN76868.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221160319|gb|ACM01299.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides KD131]
 gi|332276262|gb|EGJ21577.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N]
          Length = 233

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 77/230 (33%), Gaps = 12/230 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           S+   + +  L  I    +   F   +  +          +    NY             
Sbjct: 7   STVATDDASFLDYIDQLCQKLGFDYASYATTSPMTGA---VQGYANYPDSWKMHYMRRNL 63

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +      + P+ W   +     E    +    E   +   G+  PVR  +   G
Sbjct: 64  HRVDPTIHKSALSIAPVDWSRFE---RDERFRAVFFAAEDFGITPQGLTVPVRGPYGDRG 120

Query: 131 YVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQL 184
            +  T        E     VI E   A   +    +      R+     L+ RE   LQ 
Sbjct: 121 LLSVTRNCARPEWEKHKRAVIGELQVAAVHLHDAVMRSDVISRALRQPRLSTREIEVLQW 180

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G +  +I + LG+S  TV  +L SA  KL  ++ +QA+ +AI  G +
Sbjct: 181 AAAGKSQTDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGLV 230


>gi|264678731|ref|YP_003278638.1| transcriptional regulator, luxR family [Comamonas testosteroni
           CNB-2]
 gi|262209244|gb|ACY33342.1| transcriptional regulator, luxR family [Comamonas testosteroni
           CNB-2]
          Length = 239

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 9/231 (3%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           L  + + SL  +   +  +   +    F L++ +SA D    +++     ++      + 
Sbjct: 14  LAIEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARD-DAVERIYWIEGDWFGTGAPVD 72

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRL 124
                        H      P  W          + G+    +     P   G+  PV  
Sbjct: 73  AE-TYVRHCPVTRHILETNQPFFWT-----KTNGAQGERYSVVRAPQGPGIHGLQVPVFG 126

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQ 183
                G +    E +  + +  +               L +         L++RE   L 
Sbjct: 127 LLGLEGAMSLGGERIDASPQARLALELIAQIAFRTARRLLELPAQEELGPLSDREREVLA 186

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G    EIA  LGLS  TV  +L     +L      QAI  AIR G I
Sbjct: 187 WTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRVAIRNGEI 237


>gi|17548004|ref|NP_521406.1| transcriptional activator SOLR transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|20140008|sp|P58590|SOLR1_RALSO RecName: Full=Transcriptional activator protein solR
 gi|17430310|emb|CAD17075.1| transcriptional activator solr. transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 236

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 13/229 (5%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           + Q+       I + ++   F        +  P  +  +     Y     +         
Sbjct: 14  TAQDERQLFRQIASVVRQLGFDYCCYGIRVPLPVSKPAVAIFDTYPAGWMEHYQASGFLE 73

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D  +    S    IIW        I                  G+A          G +
Sbjct: 74  IDPTVRTGASSSDLIIWP-----VSIRDEAARLWSDARDFGLNIGVARSSWTAHGAFGLL 128

Query: 133 IFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                   L    +              + +++ FL + K    ++  LT RE   L   
Sbjct: 129 TLARRADPLTAAELEQLSATTNWLANLAHALMSPFL-MPKLVPESSAALTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G T+ EI + L +S  TVN ++ +  +KL A N++QA+ KAI  G I
Sbjct: 188 GEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236


>gi|254249338|ref|ZP_04942658.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124875839|gb|EAY65829.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 288

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 10/209 (4%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F           P  +  +  + N+  +             D  +    S   P++W 
Sbjct: 84  LGFRYCVYGLRRTLPLARPDLQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWN 143

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
           +       E                 G +          G +    +   L  + I    
Sbjct: 144 AFD-----EPGDTAFWHDAACFGMRYGWSHGGYDRAGNLGVLTLVRDTTPLDADEISRLR 198

Query: 151 G----ACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                  +      +  L    +     LT RE   L    DG T+ EI    G++  TV
Sbjct: 199 APCASLAHAAHAYLMPRLADPIAPVGTGLTLREREVLAWTADGKTAYEIGMIFGIAERTV 258

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L +A VKLDA+N+  A  KA   G +
Sbjct: 259 KFHLQNAVVKLDAMNKTHAATKAAMLGLL 287


>gi|167615994|ref|ZP_02384629.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
          Length = 194

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 60/198 (30%), Gaps = 9/198 (4%)

Query: 41  ALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES 100
              FP     I  + NY     +          D  +        P+ W +    +    
Sbjct: 2   RRPFPISNPQILMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSASTNASKSA- 60

Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQV 156
                           G +   R      G +  +     +            H      
Sbjct: 61  ----FWAEALSFGIAHGWSSASRGADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVA 116

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                           +LT RET  L+   DG T+ EIA  L +S  TVN ++ +   KL
Sbjct: 117 HASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKL 176

Query: 217 DAVNRIQAIAKAIRFGYI 234
            + N+IQA+AKA   G +
Sbjct: 177 GSTNKIQAVAKAALMGML 194


>gi|152061176|dbj|BAF73632.1| putative transcription factor PsyR [Pseudomonas syringae pv.
           tabaci]
          Length = 232

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 15/223 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R      L NY                
Sbjct: 16  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 70

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 71  DPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 129

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I                L+ RET  L+ 
Sbjct: 130 LCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPTQCKLSTRETGVLKW 189

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              G +  EIAE   +S  TV  ++ + + KL+     QA+ K
Sbjct: 190 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYK 232


>gi|327200684|pdb|3QP5|A Chain A, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200685|pdb|3QP5|B Chain B, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200686|pdb|3QP5|C Chain C, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200687|pdb|3QP5|D Chain D, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|288973234|gb|ADC79709.1| CviR transcriptional regulator [Chromobacterium violaceum]
          Length = 265

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 5/224 (2%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
             +  EL   L  + ++  +    L           ++       +Y  D  D       
Sbjct: 34  IETENELKAFLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPSDWLDQYMKENY 93

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  L   + G  P++W+         +  +  +         +GI F      +  G
Sbjct: 94  AQHDPILR-IHLGQGPVMWEERFNRAK-GAEEKRFIAEATQNGMGSGITFSAASERNNIG 151

Query: 131 -YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGD 187
             +            ++   +     +    + +      S +   L++RE         
Sbjct: 152 SILSIAGREPGRNAALVAMLNCLTPHLHQAAIRVANLPPASPSNMPLSQREYDIFHWMSR 211

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G T+ EIA  L +S  TV  ++ +   KL+A NR  AI   +  
Sbjct: 212 GKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMHL 255


>gi|166798333|gb|ABY89695.1| transcriptional regulator [Mesorhizobium loti]
          Length = 241

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 13/230 (5%)

Query: 4   NTLTGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
            TL  + S S+   +    L           FA  ++               + NY    
Sbjct: 6   ETLLEQLSLSVDEVDFHNALANAAGAFDIPAFAYLSL-----VSDGVTKPRLISNYHSGW 60

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  +        P  W        I    Q             G+  P
Sbjct: 61  TSHYLRHQYERIDPVIERARCSECPFQWGRGFGHAGISKREQQLFDEAAEFGICCGLTIP 120

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLT 175
           +         + F ++ L  +   I E +    +++     +  +R      +    +LT
Sbjct: 121 LVDRRGGVAAMTFAADRLDPSFMRIAEQYEQALEIMATCFHIGVRRKLSGGLAVDGVSLT 180

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            RE  CL+    G ++ EI   LG+   T   +L +A  KL    + QA+
Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230


>gi|330969598|gb|EGH69664.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 254

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S+L +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W           T I    +  VR      
Sbjct: 65  ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLKTFITDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +       +    ++   +A     + + E     +        LF +  
Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKI 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV TV  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|300702552|ref|YP_003744152.1| transcriptional activator protein solr [Ralstonia solanacearum
           CFBP2957]
 gi|299070213|emb|CBJ41504.1| Transcriptional activator protein solR [Ralstonia solanacearum
           CFBP2957]
          Length = 236

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 69/229 (30%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            + ++       + +  +   F      + +  P  +  +     Y              
Sbjct: 13  RTAEDEHQLFREVASIARQLGFDYCCYGARMPLPVSKPAVAIFDTYPAGWMQHYQANGFL 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +    S    I+W     +                     G+A          G 
Sbjct: 73  DIDPTVRAGASSSDLIVWPVSIRDDAA-----RLWSDARDAGLNIGVARSSWTAHGAFGL 127

Query: 132 VIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLA 185
           +        L    +    I  H       T        +     N  LT RE   L   
Sbjct: 128 LTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G T+ EI + L +S  TVN ++ +  +KL A N++QA+ KAI  G I
Sbjct: 188 GEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236


>gi|163758447|ref|ZP_02165535.1| putative LuxR/GerE family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284736|gb|EDQ35019.1| putative LuxR/GerE family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 245

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 72/219 (32%), Gaps = 2/219 (0%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPNILIETYGDDF 76
              L L++   +   +  + I S  D   R       + +   D     +          
Sbjct: 26  FDLLRLLREVTQFHQYTYFFIASGCDGATRSLADSIIITSAPSDLVRRYDETGLMERSPL 85

Query: 77  LFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
           +        P+  +                               PV    H    V F 
Sbjct: 86  MRALGGRGTPLQCRLDETITAFTTEQQAALDDFSAEFNIDCCFITPVYHRDHGPAAVCFL 145

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            +   ++                    +  + S A   LTERE  CL     G TS EIA
Sbjct: 146 GKRNQMSFSEAANLAMISSLAHQKLRRVSAQPSKADSPLTERERECLVWTSSGKTSVEIA 205

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L LS HTVN YL +A  KLDAVNR QA+A AIR G+I
Sbjct: 206 RILSLSEHTVNHYLNNAARKLDAVNRTQAVALAIRQGFI 244


>gi|9297032|sp|O30919|SOLR2_RALSO RecName: Full=Transcriptional activator protein solR
 gi|2444467|gb|AAC45947.1| SolR [Ralstonia solanacearum]
          Length = 236

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 71/232 (30%), Gaps = 14/232 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + +    +L   +  I  ++    F      + +  P  +  +     Y           
Sbjct: 13  RTAEDEHQLFREIAAIARQL---GFDYCCYGARMPLPVSKPAVAIFDTYPAGWMQHYQAS 69

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +    S    I+W     +                     G+A         
Sbjct: 70  GFLDIDPTVRAGASSSDLIVWPVSIRDDAA-----RLWSDARDAGLNIGVARSSWTAHGA 124

Query: 129 NGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
            G +        L    +    I  H       T        +     N  LT RE   L
Sbjct: 125 FGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTTREREVL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G+G T+ EI + L +S  TVN ++ +  +KL A N++QA+ KAI  G I
Sbjct: 185 CWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236


>gi|328542134|ref|YP_004302243.1| LuxR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326411884|gb|ADZ68947.1| LuxR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 217

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 69/218 (31%), Gaps = 10/218 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +  R +A   +  A   P  +     L  +     D          D  +      
Sbjct: 1   MLAELGFREWAY-QVIRAEALPDEKP--VILTTFSDAWRDHYIDSSYHLIDPVILKGPER 57

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
           LLP  W S+          +             G+  PV   +     +   +E      
Sbjct: 58  LLPFTWSSMSFGIEPTDEQKSFFAEAEEFGLGEGLGIPVHGAYGSLAMISMVAEEETRRL 117

Query: 144 EVII-----EAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
             ++     + H           EL    +   +  +L+ RE  CL    +G T  EI+ 
Sbjct: 118 ARMLHHHGEDVHLISLIFHNLARELMALGRCGRSPISLSPRERECLIWLANGKTRWEISL 177

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LG+S  TV  +  +   K    +R + I +A+R G I
Sbjct: 178 ILGISEETVKYHFKNIRAKFGTYSRHEIIIQAVRLGLI 215


>gi|152989200|ref|YP_001349253.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7]
 gi|150964358|gb|ABR86383.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7]
          Length = 239

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 75/246 (30%), Gaps = 23/246 (9%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  ++SS   E S  L  + + +                 +  +    + NY   
Sbjct: 3   LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +  +       D  + H    +LPI W   +                       G+  
Sbjct: 60  WREHYDKAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168
           P+     + G +  +     +  E   EA+     V+     L            F+   
Sbjct: 117 PLHGARGELGALSLS-----VEAESRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPV 171

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LT RE   LQ    G TS EI+     S   VN ++G+   K    +R  A   A
Sbjct: 172 NKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231

Query: 229 IRFGYI 234
           +  G I
Sbjct: 232 VNLGLI 237


>gi|90423713|ref|YP_532083.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105727|gb|ABD87764.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB18]
          Length = 240

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 82/234 (35%), Gaps = 11/234 (4%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +++S+ +L+  L   +N     +   +  +        Q     L  YD        
Sbjct: 9   TIDRANSVDDLARTLVDWRNESGVAHLVYHATHVPGC---EQPNPVLLLTYDDAWVKRYV 65

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +      +LPI W S++  T            E   +   G   P+R   
Sbjct: 66  EQDYFGIDPVVVAGRDAVLPIDWMSVEHATPQARQ--FFAEAESYGVGRHGFTLPIRGPA 123

Query: 127 HKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSS-AARNLTERETS 180
            +      T+              + + H   + +    + L   R   A R L+ RE  
Sbjct: 124 AERALFTITTNATDDHWHRWRFSYLKDFHLLAHYLHDRAMRLAGLRLDHAMRPLSRREQQ 183

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           CLQ    G T  +IA  L LS   V+ YL +A  KL+     QAIAKA+R   +
Sbjct: 184 CLQGLVHGRTPGQIAGDLELSASAVHGYLRTARRKLNCATHEQAIAKAVRLELL 237


>gi|144900206|emb|CAM77070.1| transcriptional activator protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 237

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 66/238 (27%), Gaps = 14/238 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           M+E  L  +  SS Q+    L  +        FA       L+ P           Y  +
Sbjct: 8   MTEELLWVEDISSAQD---SLRRLAKLANVDFFAYGNSRPGLENPYWDA------TYPTE 58

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-ESSGQLSVRLEGGLLPFAGIA 119
             +        + D  +       LP  W+ +           +L            G  
Sbjct: 59  WMEHYFANRYQFIDPVVLEAQRSHLPFAWRFLLNRPGAMSPEQKLLFAEAAKYGIRDGFT 118

Query: 120 FPVRLGFHKNGYVIFT---SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176
            P          + F       +     +            T    L +        L+ 
Sbjct: 119 IPFHSDNGCIAAMSFAFRSRAEMEHFANMQPRLKLLALYYHTAIERLLEVEIP-DDELSA 177

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            E  CL    DG +  EI+  L      V + L SA  KL A    QA+ KAI  G I
Sbjct: 178 MERQCLTFLADGRSLWEISGLLHRPESDVTSSLRSARDKLGAATTAQAVHKAIAEGLI 235


>gi|59940055|gb|AAX12566.1| LuxR-type transcriptional regulator [Aeromonas sp. 'CDC 2478-85']
          Length = 260

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 7/230 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    +++ +   +                
Sbjct: 14  TSVTDGDRLAELISRFTLGMGYDYYRFAVIILMSMQRRKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LP+ W   +E    ++   +  + L        GI+FP+       G
Sbjct: 74  ACDPIIQLARKQTLPLYWNRREERGRFLQEGSRDVMGLAAEFGLRNGISFPLHRAAGGKG 133

Query: 131 YVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
            + F      + + L+ ++ ++       ++     + +  +       LT RET CL L
Sbjct: 134 IMSFIISERASRDLLLESSPLLSWMSNYIFEAAIRIVRVSLREDDPQEALTARETECLFL 193

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G TS EIA  LG++   VN +L   T K  ++NR QAI K +  G +
Sbjct: 194 ATEGKTSGEIACILGITERPVNYHLNQVTRKTGSMNRCQAIIKGVSSGIL 243


>gi|59714108|ref|YP_206883.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio
           fischeri ES114]
 gi|462557|sp|P35327|LUXS_VIBF1 RecName: Full=Transcriptional activator protein luxR
 gi|295436|gb|AAA27542.1| putative [Vibrio fischeri ES114]
 gi|59482356|gb|AAW87995.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio
           fischeri ES114]
          Length = 250

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 11/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +++  L  I   I   +   Y           +  +  + NY        +       D 
Sbjct: 24  DINQCLSEIAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDP 80

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + +  S   PI W  + E+  I+      ++         G +FP+    +  G + F 
Sbjct: 81  VVDYSKSHHSPINWN-VFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFA 139

Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                +  + +   H           ++ ++ ++   R  +   LT+RE  CL  A +G 
Sbjct: 140 HSDKDIYTDSLF-LHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGK 198

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +I++ LG S  TV  +L +  +KL+  NR Q+I+KAI  G I
Sbjct: 199 STWDISKILGCSERTVTFHLTNTQMKLNTTNRCQSISKAILTGAI 243


>gi|260461687|ref|ZP_05809933.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785241|ref|YP_004144717.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032328|gb|EEW33593.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171129|gb|ADV14667.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 241

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 72/226 (31%), Gaps = 10/226 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ S   +       + +   A +F L+   S        +    + NY          L
Sbjct: 10  EQLSESVDAVDLCETMASAAAALDFPLFAYFSCPS--ASGRKPRLISNYPPSWTSRYMQL 67

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +     G     W        + ++ Q  +          G+   +     +
Sbjct: 68  RYHRHDPVILRGLQGWDTFDWGVDLARQHLPAAQQRILEEAARFGIRCGLTMSMHDHRGR 127

Query: 129 NGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
              +   S+             E  ++     + +      L +        LT RE  C
Sbjct: 128 FAALTLASDQSRPPLLRSLSRYEQALQLVAISFHIFAR-RRLAEDCVVDGVILTPREFEC 186

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+ A DG ++ +I++ L +S  TV  +L +A  KL      QA+A+
Sbjct: 187 LKWAADGKSAWDISQILSVSKRTVTFHLENAKAKLGVRTINQAVAR 232


>gi|49082134|gb|AAT50467.1| PA1430 [synthetic construct]
          Length = 240

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 75/246 (30%), Gaps = 23/246 (9%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  ++SS   E S  L  + + +                 +  +    + NY   
Sbjct: 3   LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +  +       D  + H    +LPI W   +                       G+  
Sbjct: 60  WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168
           P+     + G +  +     +  E   EA+     V+     L            F+   
Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPV 171

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LT RE   LQ    G TS EI+     S   VN ++G+   K    +R  A   A
Sbjct: 172 SKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231

Query: 229 IRFGYI 234
           +  G I
Sbjct: 232 VNLGLI 237


>gi|330992245|ref|ZP_08316193.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter
           sp. SXCC-1]
 gi|329760444|gb|EGG76940.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter
           sp. SXCC-1]
          Length = 244

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 72/225 (32%), Gaps = 5/225 (2%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
                +           +       Y++ +       Q+       Y             
Sbjct: 22  IRGAPDHQALAEAFGALVSRLGPHAYSMGTIHKTDPLQRH-LIATTYPDHWMAHYVARNY 80

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D  +     GL P  W+ I  E          +R  G +   +G A P+ L      
Sbjct: 81  HHIDPVIDPLRHGLHPYDWKDIHIEN---RRQDTMLREFGEMGFRSGHAVPLALAPGTLL 137

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGY 189
            V   S    +     +    A  Q    + +L +K +      LT RE  CL     G 
Sbjct: 138 LVSIASYDPHIDTRQQMAIQLAASQFHYRYHQLGRKHAGITGTGLTRRERECLTWVAQGK 197

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + +I   L LS +T+  +L +A  KL   NR+QA  KA   G I
Sbjct: 198 DTADIGHILALSDNTIKFHLKNALRKLGCHNRVQAAVKATCLGLI 242


>gi|15596627|ref|NP_250121.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAO1]
 gi|116049375|ref|YP_791822.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892698|ref|YP_002441567.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58]
 gi|254234529|ref|ZP_04927852.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719]
 gi|254239780|ref|ZP_04933102.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192]
 gi|313106426|ref|ZP_07792658.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016]
 gi|125980|sp|P25084|LASR_PSEAE RecName: Full=Transcriptional activator protein lasR
 gi|9947379|gb|AAG04819.1|AE004572_7 transcriptional regulator LasR [Pseudomonas aeruginosa PAO1]
 gi|151326|gb|AAA25874.1| transcriptional activator LasR [Pseudomonas aeruginosa PAO1]
 gi|115584596|gb|ABJ10611.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166460|gb|EAZ51971.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719]
 gi|126193158|gb|EAZ57221.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192]
 gi|156106986|gb|ABU49653.1| LasR [Pseudomonas sp. M18]
 gi|218772926|emb|CAW28738.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58]
 gi|310879160|gb|EFQ37754.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016]
          Length = 239

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 75/246 (30%), Gaps = 23/246 (9%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  ++SS   E S  L  + + +                 +  +    + NY   
Sbjct: 3   LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +  +       D  + H    +LPI W   +                       G+  
Sbjct: 60  WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168
           P+     + G +  +     +  E   EA+     V+     L            F+   
Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPV 171

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LT RE   LQ    G TS EI+     S   VN ++G+   K    +R  A   A
Sbjct: 172 SKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231

Query: 229 IRFGYI 234
           +  G I
Sbjct: 232 VNLGLI 237


>gi|308186328|ref|YP_003930459.1| Transcriptional activator protein phzR [Pantoea vagans C9-1]
 gi|308056838|gb|ADO09010.1| Transcriptional activator protein phzR [Pantoea vagans C9-1]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 10/216 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +Q   ++  F  +        P  +  I     Y                D  L      
Sbjct: 30  LQQFTESLGFDYFAFLIQHPVPFTRPRIHLHSTYPKLWVKRYEKQNYYAVDPVLTLCQRP 89

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM--- 140
              + W   Q                      +G +          G +  +S+  +   
Sbjct: 90  GRGMAWSEEQFTDAGN-----LWHEAREYGLQSGFSCSAMAPNRVIGILSISSQQPISVQ 144

Query: 141 -LANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198
               E+ ++ H      +              +   ++RE   L+   +G T+ EI+  L
Sbjct: 145 LRHAELEVKLHLLAELSLDTLERFSDDAMMVLKKAFSQRELEILKWTAEGKTAVEISLIL 204

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S HTVN +  +   + +  N+ Q    A   G I
Sbjct: 205 SISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240


>gi|89053644|ref|YP_509095.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863193|gb|ABD54070.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 243

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 73/236 (30%), Gaps = 5/236 (2%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           M+      ++  +         ++ + +      + + +         +       +  +
Sbjct: 1   MTSVDAIMEQIRTAPSRRALWQIMLDFMHDEGVVMGSYHFVDADAASVR--VAADGFPEE 58

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                        D           P  W  IQ+     +     +          G+AF
Sbjct: 59  WICEYLNRKLALIDPIPALAARMSRPFYWHEIQDLIPPSAQTDAYLDRLRASGLGDGLAF 118

Query: 121 PVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
            V     +N YV   F    + L  E I               EL   ++     L+ RE
Sbjct: 119 YVFGPGLRNAYVGLGFGRPVVDLPPEQIFRLQCVAQAGHLRVCELS-DQAPKEAALSPRE 177

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L     G ++  IAE L +S HTV+A++ S   KLD  +R  A  + +  G +
Sbjct: 178 KQVLDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVL 233


>gi|209809708|ref|YP_002265247.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
 gi|208011271|emb|CAQ81712.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
          Length = 247

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 6/211 (2%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +Q   K  +   Y +         +  I  L NY L   +  +       D  + +  S 
Sbjct: 29  LQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYYDEANLIKDDPIVDYSFSH 88

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
             PI W   +++  + +     +        ++G +FP+       G + F S       
Sbjct: 89  HSPINWSIFEKQKKMSNQIN-VIEEAKISGLYSGFSFPIHTKDGGFGMISFASSQKEKYI 147

Query: 144 EVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           + +             +++     + K+       LT+RE  CL  + +G +  EI++ L
Sbjct: 148 DNLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKECLIWSCEGKSRWEISKIL 207

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           G S  TV  +L ++ +KL A NR Q+I+KAI
Sbjct: 208 GCSERTVTFHLANSQLKLGANNRCQSISKAI 238


>gi|119116629|dbj|BAF40892.1| LuxR [Shewanella hanedai]
          Length = 243

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 12/217 (5%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +       +   Y           +  +  L NY        N       D  + +  S 
Sbjct: 24  LTKLALLLDCEYYLFAILNPVSIFKSDLYILDNYPSCWKKYYNDEKLIDYDPIIDYSASN 83

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
             PIIW  +++    ++     +         +G +FPV    +  G + F +       
Sbjct: 84  YAPIIWSMLEQSKWDKNKTN-VIEEAKNSNLKSGFSFPVHTKNNSFGVISFANSNNEKT- 141

Query: 144 EVIIEAH--------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
             +I  H            +++     + K   +    LT RE  CL    +G T+ EI+
Sbjct: 142 --LISLHSNSYSYVLLVLPELLDSHQRINKNIGNTCTQLTPREKECLAWISEGKTTWEIS 199

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           + L  S  TV+ ++ +   KL   NR Q+I+K+I  G
Sbjct: 200 KILDCSERTVSFHITNLQTKLGTNNRSQSISKSILTG 236


>gi|21311443|gb|AAM46724.1|AF452135_9 LuxR2 [Aliivibrio salmonicida]
          Length = 223

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 6/211 (2%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +Q   K  +   Y +         +  I  L NY L   +  +       D  + +  S 
Sbjct: 5   LQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYYDEANLIKDDPIVDYSFSH 64

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
             PI W   +++  + +     +        ++G +FP+       G + F S       
Sbjct: 65  HSPINWSIFEKQKKMSNQIN-VIEEAKISGLYSGFSFPIHTKDGGFGMISFASSQKEKYI 123

Query: 144 EVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           + +             +++     + K+       LT+RE  CL  + +G +  EI++ L
Sbjct: 124 DNLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKECLIWSCEGKSRWEISKIL 183

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           G S  TV  +L ++ +KL A NR Q+I+KAI
Sbjct: 184 GCSERTVTFHLANSQLKLGANNRCQSISKAI 214


>gi|541657|dbj|BAA06489.1| LasR [Pseudomonas aeruginosa]
          Length = 239

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 75/246 (30%), Gaps = 23/246 (9%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  ++SS   E S  L  + + +                 +  +    + NY   
Sbjct: 3   LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +  +       D  + H    +LPI W   +                       G+  
Sbjct: 60  WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168
           P+     + G +  +     +  E   EA+     V+     L            F+   
Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPV 171

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LT RE   LQ    G TS EI+     S   VN ++G+   K    +R  A   A
Sbjct: 172 SKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231

Query: 229 IRFGYI 234
           +  G I
Sbjct: 232 VNLGLI 237


>gi|148560233|ref|YP_001258220.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148371490|gb|ABQ61469.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella ovis ATCC 25840]
          Length = 235

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++              +           
Sbjct: 11  QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 67

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + + P+IW      +  +                 GI+ P       
Sbjct: 68  NYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 122

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 123 FGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRERE 181

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN+++A+AKA  FG +
Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVKAVAKARTFGLL 235


>gi|330952863|gb|EGH53123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 254

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 90/248 (36%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S+L +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W           T I    +  VR      
Sbjct: 65  ADWYALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLKTFITDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNG---YVIFTSEFLMLA--NEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +          +      + L    + + E     +        LF +  
Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCADGSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKI 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV TV  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|197344641|gb|ACH69671.1| LuxR family transcriptional regulator [uncultured proteobacterium]
          Length = 277

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++ +  ++  R    Q   +A  F  +   S +D  +  +    LH+Y  +   + + L 
Sbjct: 15  RAGAPVDVLAR--DFQRCTEALGFRHFACCSHVDPLKPPRRAVMLHSYPKEWAQLFSELE 72

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D    H +  L+P  W +      +    Q      G      G   P+       
Sbjct: 73  LFDIDPVFLHASRSLVPFFWDTEAFNDELSPPQQELFNEAGRYGLTRGYTVPIH--SVDA 130

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCL 182
                 S  ++  +E +  A     Q++  +L          K      + L+ RE  CL
Sbjct: 131 PRDFRASCSVVPDSESLEPAAYQAVQLMAFYLYDTASKDAQQKDPPPVQQPLSRRERQCL 190

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           +LA  G +    +  LGLS  TV+ ++ +A  +L    R+QA+  A+
Sbjct: 191 ELAAQGKSDWVSSRILGLSERTVHNHVENAKRRLQVATRMQAVMHAL 237


>gi|260433332|ref|ZP_05787303.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417160|gb|EEX10419.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 230

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 14/217 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           I +      F   +  +       +  +    NY  +           + D  L+     
Sbjct: 15  INSVCNELGFDYASYATTHPV---KGDVQGYANYPDEWKLHYGSQGYHHLDPTLYQAALS 71

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSEFLMLA 142
           + P+ W     +    +      R          G+  PVR  + + G +  T +     
Sbjct: 72  IAPVDWSRFNHDEKFNA----VFRDAHDFGITDRGLTVPVRGPYGECGMLSVTKDCSDTE 127

Query: 143 N-----EVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
                  V+ +   A  Q     ++     ++    +L+ RE   LQ   +G + ++I +
Sbjct: 128 WKKLKRHVMGDLQMAAVQAHDTVMQSGVLAKALYLPSLSRREREILQWVAEGKSQQDIGD 187

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L +S  TV  +L S   KL A+   QAI +AI  G 
Sbjct: 188 ILSISHRTVEVHLRSGREKLGALTTAQAIGRAIGLGL 224


>gi|254511024|ref|ZP_05123091.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
 gi|221534735|gb|EEE37723.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 15/222 (6%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  + ++ +  + A   +N A         I     Y  D  +          D  L 
Sbjct: 18  EFLRQVCDKYEMDHAAYAGMNPAAG------TIHGHVTYGDDWKNHYQEQGLHLIDPTLH 71

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                + P+ W  ++     +   ++        +P  GI  PVR  +   G +  T   
Sbjct: 72  MSQRSIAPVDWSRLE---RGKDFQRVFRDAHDFGIPDQGITIPVRGPYGDIGLLSATRGC 128

Query: 139 LMLANEVII-----EAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSE 192
                + ++     +       +  + +      R      L+ RE   LQ A  G + +
Sbjct: 129 SRDEWKKLVPNVIKDLQSLAVHIHDNVMTSDTISRMLYHPTLSSRELEILQWAAAGKSQQ 188

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +I + L +S  TV  +L S+  KL+A+   QA+ +AI  G I
Sbjct: 189 DIGDILSISHRTVEVHLRSSREKLNALTTPQAVGRAIGIGLI 230


>gi|320325287|gb|EFW81354.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 189

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 57/190 (30%), Gaps = 10/190 (5%)

Query: 54  LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113
           + NY                D  + H    + P  W+  +       +     R      
Sbjct: 1   MSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAK-YQ 59

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE---------AHGACYQVITDFLELF 164
             +G  F +         +   +       +  I                ++I       
Sbjct: 60  LSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHE 119

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                A   L+ RET  L+    G +  EIAE   +S  TV  ++ + + KL+     QA
Sbjct: 120 LFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQA 179

Query: 225 IAKAIRFGYI 234
           + KAI  G +
Sbjct: 180 VYKAINIGMV 189


>gi|255608035|ref|XP_002538833.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus
           communis]
 gi|223510221|gb|EEF23550.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus
           communis]
          Length = 234

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 73/227 (32%), Gaps = 5/227 (2%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +  +++  +         RI A  +      + L   +  +      ++  D  ++    
Sbjct: 10  EACATIDAVKALFK---RRIAAHGYTASACGAFLPADKGPEPHFFFQDWPPDWLELYVNR 66

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +      + P  W+  + E  +  + Q             G++ P+      
Sbjct: 67  NFVAADYGVAEARRRIAPFTWREAKAERTLSRAEQDIWDTVVEWGWTDGLSVPIHGPGGY 126

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAG 186
              V    +   +   +  +     +        L      +     LT RE  CL+   
Sbjct: 127 FAIVTMAGKEQPMPPALRGKLQQLAFLTHERCRALTGLAPVTDPQATLTHRELECLRWVA 186

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            G T  +IA  LG+S  T   ++  A  KL A  R QA+A+ +  G 
Sbjct: 187 AGKTDLQIARLLGVSQTTARTHIDQARRKLGARTRSQAVARLVLSGL 233


>gi|26991331|ref|NP_746756.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24986392|gb|AAN70220.1|AE016661_6 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
          Length = 279

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 13/223 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L      +   +         +N  +    +   +    NY  +  +          D  
Sbjct: 65  LFDIAVHLAQDLD---MDYLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPA 121

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
               +S  +P++W     +   +        +        G    +    H    +    
Sbjct: 122 ANLSHSSTMPVLWTDELYKEAPQ-----FREMACLYGLRHGWTQSLHDQQHNESQISVAR 176

Query: 137 EFLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTS 191
               +    + +        C+ +     E            ++ERE   L+ +  G T+
Sbjct: 177 PNGPIDEVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPKMSERELEVLKWSAAGKTA 236

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++A  L LS  TVN ++ S   K +A N+  AIA A   G+I
Sbjct: 237 ADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 279


>gi|327190710|gb|EGE57792.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 68/223 (30%), Gaps = 4/223 (1%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +  E+   +  +   +    F + T+ +          I  + N+  +  D  +      
Sbjct: 19  THYEVFKFMKGLTQDLGMTAFLIMTLPTVDFVEIGATKI--ITNWPAEMVDYYDAHNLMV 76

Query: 73  GDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
               +        P  +          E      + L        G  FPV       G 
Sbjct: 77  DSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGRGA 136

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           +  +        E+          +     +L           T  E  CL+L   G  S
Sbjct: 137 MSISGSRNFTMLEMAKIL-FIATLIYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGGRKS 195

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA+ L LS + VN ++GS   KL    R QA+  A+R   I
Sbjct: 196 SEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|56697147|ref|YP_167510.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
 gi|56678884|gb|AAV95550.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 15/222 (6%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  ++ +++  + A   +N A         I     Y  +             D  L 
Sbjct: 18  DFLLQVREKLEMDHAAYAGLNPAAGA------IHGYVTYSDEWKLHYQEQGFHMIDPTLH 71

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                + P+ W  ++         ++        +   G+  PVR  +   G +  T E 
Sbjct: 72  MSQRSIAPVDWSRLE---RSNDFRRVFRDAHDFGIGDQGLTIPVRGPYGDVGLLSVTREC 128

Query: 139 LMLANEVII-----EAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSE 192
                + ++     +       +    +      R     +L+ RE   LQ    G + +
Sbjct: 129 STEEWQKLVRHVIGDLQSLAVHIHDTVMSSDMLGRILYHPSLSTREVEILQWVAAGKSQQ 188

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +I + L +S  TV  +L S+  KL A+   QA+ +A+  G I
Sbjct: 189 DIGDILSISHRTVEVHLRSSREKLCALTTAQAVGRAVGLGLI 230


>gi|28558836|ref|NP_788096.1| putative transcriptional regulator [Ruegeria sp. PR1b]
 gi|22726387|gb|AAN05182.1| RC109 [Ruegeria sp. PR1b]
          Length = 258

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 80/249 (32%), Gaps = 18/249 (7%)

Query: 1   MSENTLTGKKSS-SLQELSPRLHLIQNRIK--ARNF-ALYTINSALDFPRRQQLIC---- 52
           M  N ++  + S ++ E   R   ++      A         +     P+ +        
Sbjct: 8   MKCNNVSASRISCAISEKFSRFSSLKEVSDFLASGLGDYGISDVTYYTPKSKVKGGGAGR 67

Query: 53  ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112
            +  Y  D  D    +     D  +        PI W  +++                  
Sbjct: 68  LITTYSQDWQDHYFEMSYQDKDPVIEMGQQSFCPIDWSILKDRCGDTKK---MFGEAREF 124

Query: 113 LPFA-GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKK 166
                G+  P+R    +   +  TS+         + AH        + +    L L   
Sbjct: 125 GVSDRGVVIPMRGHLGEITLISMTSDLGGSEWVKYLSAHKSEFVNFAFCLHGSILSLSAN 184

Query: 167 RSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT RE   LQ A  G TS E A  L LS  T+  Y+G A  KL+A  +  A+
Sbjct: 185 TGGKEEPRLTVREKQVLQWAAFGKTSWETAMILELSERTIETYIGKAVAKLEASTKAHAV 244

Query: 226 AKAIRFGYI 234
            KA+  G I
Sbjct: 245 CKALSLGLI 253


>gi|146277748|ref|YP_001167907.1| autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555989|gb|ABP70602.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 233

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 72/227 (31%), Gaps = 12/227 (5%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             + +  L  +        F   +  +          +    NY                
Sbjct: 10  ASDDANFLEYLDQLCARLGFDFASYATTSPMTGA---VQGYANYPDSWKMHYMRRNLHRV 66

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  +      + P+ W   +     E    +    E   +   G+  PVR  +   G + 
Sbjct: 67  DPTIHKSALSIAPVDWARFE---RDERFRAVFFAAEDFGITPQGLTVPVRGPYGDRGLLS 123

Query: 134 FTSEFLMLANE-----VIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGD 187
            T        +      I +   A   +    +      R+     L+ RE   LQ    
Sbjct: 124 VTRRCPRSDWDKLKRAAIGDLQVAAVHLHDAVMRSDVISRALRQPRLSTREIEVLQWVAA 183

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G +  +I + LG+S  TV  +L SA  KL  ++ +QA+ +AI  G +
Sbjct: 184 GKSQMDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGLV 230


>gi|71736210|ref|YP_276356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482085|ref|ZP_05636126.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|71556763|gb|AAZ35974.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322567|gb|EFW78660.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330180|gb|EFW86166.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330875327|gb|EGH09476.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330987492|gb|EGH85595.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011444|gb|EGH91500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 254

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S++ +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTVDQQMDCALLLASELGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W          +T I    +  VR      
Sbjct: 65  ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +       +    S+    A     + + E     +        LF +  
Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDAALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV TV  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|300689864|ref|YP_003750859.1| transcriptional activator protein solR [Ralstonia solanacearum
           PSI07]
 gi|299076924|emb|CBJ49537.1| Transcriptional activator protein solR [Ralstonia solanacearum
           PSI07]
          Length = 236

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 68/229 (29%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            + Q+       I +  +   F        +  P  +  +     Y              
Sbjct: 13  RTAQDERQLFREITSIARQLGFDYCCYGVRMPLPVSKPAVAIFDTYPAGWMQHYQASGFL 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +    S    IIW        I                  G+A          G 
Sbjct: 73  EIDPTVRAGASSSDLIIWP-----VSIRDEAMRLWSDARDFGLNIGVARSSWTARGAFGL 127

Query: 132 VIFTSEFLMLANEVIIEA----HGACYQVITDFLE-LFKKRSSAARN-LTERETSCLQLA 185
           +        L    +       +       T     L  K    +   LT RE   L   
Sbjct: 128 LTLARHADPLTAAELDRLSATTNWLANLAHTLMSPFLMPKLVPESNAVLTAREREVLCWT 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G T+ EI + L +S  TVN ++ +  +KL A N++QA+ KAI  G I
Sbjct: 188 GEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIVIGLI 236


>gi|83952460|ref|ZP_00961191.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius
           nubinhibens ISM]
 gi|83836133|gb|EAP75431.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius
           nubinhibens ISM]
          Length = 251

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 24/238 (10%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           + L  L   +  ++  +K     L+  ++  D  +        H                
Sbjct: 20  AGLSSLPATVEALRRALKVDQI-LFCSSTGPDRSQN------WHTLPPGWTARYAQQGYH 72

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D         + P  W+ +  +     + +         +   G   P      +   
Sbjct: 73  RIDPVRAEAQRRVTPFDWRPLDWQRPAARALR--ADAVAHGIGPQGFTIPAHGPNGQLAL 130

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLEL---------------FKKRSSAARNLTE 176
           +  T++        +  A+     +    L                     +  A  L+ 
Sbjct: 131 LSITADRDDATWTDLTRANRFALILAAHALHHKIMSQPDAGLGEDPDSAAATPPAPRLSP 190

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RET  + L   G +  +IA KL +S HT+ +Y+ +A  KL AVN   A+A+AI  G I
Sbjct: 191 RETDVITLLARGDSRGQIATKLAISEHTLRSYIETARHKLGAVNTPHAVARAIAMGMI 248


>gi|222150233|ref|YP_002551190.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221737215|gb|ACM38178.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 246

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 64/211 (30%), Gaps = 9/211 (4%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS- 91
           F  Y +  +    +    +     +      +         D  + +      P  W   
Sbjct: 35  FDYYGLVRSPKPDQNPMSLVLAGRWPEKWPQVYITKKFVLIDPAIRYLAQAQRPFRWSET 94

Query: 92  --IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
                +       Q  +          G  FP+         +      + L    I+  
Sbjct: 95  LTAFSQDPHFKRMQRMMMDAQRFGLEEGYIFPIHGRGGLLANMTIGGRPVELTPIEIMLF 154

Query: 150 HGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                       E+  +    +        LT RE   L   G+G TS E+++ L +S H
Sbjct: 155 DTVAKCAFWRLAEINGEDELLSMVQKVDVRLTRRELEILNYLGEGMTSNEMSKLLEISNH 214

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV+ Y+     KL+A NR   +A A R G I
Sbjct: 215 TVDWYVNELQDKLNAKNRQHMVAIAYRLGLI 245


>gi|104783716|ref|YP_610214.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112703|emb|CAK17431.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 234

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 18/233 (7%)

Query: 15  QELSPRLHL---------IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +++   L                +A       ++  L    +   +   +NY  +  +  
Sbjct: 7   EDIQQLLEERNPQRMFEIAVTMSQALGMEYLGLSLHLHIAAQNPQVILYNNYPREWNEHY 66

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   D  +   +  L P IW       V                   G    V   
Sbjct: 67  RQGNFLTIDPIVSMCHKTLKPQIWSDELYCEVP-----HFRESAMRFGITHGWTQSVFDQ 121

Query: 126 FHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSC 181
            H    +        +  + + +        C  +     E   ++ S   NL+ERE   
Sbjct: 122 RHNESQLSVCRGKRPIKVKEVYDKASQVMWLCNTLHAALSEHHLEKLSPTPNLSERELEV 181

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+ +  G T+ ++A  L LS  TVN ++ S   K +A N+  AIA A   G +
Sbjct: 182 LKWSAGGKTAADVATILSLSTSTVNFHIRSVINKTNAANKAGAIAVAFLRGLL 234


>gi|237807075|ref|YP_002891515.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
 gi|237499336|gb|ACQ91929.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
          Length = 254

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 73/202 (36%), Gaps = 7/202 (3%)

Query: 27  RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86
              A NF  Y +   L    +Q  +  L     +  +          D       +   P
Sbjct: 31  LCAANNFEYYQLCLTLRRGLQQTDLTLLTQTPDNWAEHYAKNNTIQNDSLYQRAQTQSRP 90

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-LMLANEV 145
           + WQS   E   E    L +          GIA P+       GY   +      +  + 
Sbjct: 91  LFWQS---EAKPEHENFLPMDCWRQFGMEEGIAVPLHGPAGFCGYFALSRHKKEPIRLQD 147

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                   + +    ++LF   S    NL+ RE  CL    +G TS EIA+ LG++  TV
Sbjct: 148 FFHLSYLGHILQEQAIQLF---SPEQSNLSGREKECLFWVSEGKTSWEIAQILGITERTV 204

Query: 206 NAYLGSATVKLDAVNRIQAIAK 227
           N +L +A  K    NR Q +AK
Sbjct: 205 NFHLNNAIRKSGCKNRYQTVAK 226


>gi|289625636|ref|ZP_06458590.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646651|ref|ZP_06477994.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488410|ref|ZP_07006441.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157035|gb|EFH98124.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330868197|gb|EGH02906.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 254

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S++ +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTVDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W          +T I    +  VR      
Sbjct: 65  ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +       +    S+    A     + + E              LF +  
Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDAALEDARQSLAEFGLLAQAFQEVAYPLFDQKM 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV TV  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|33326387|gb|AAQ08608.1| putative transcription regulator [Agrobacterium vitis]
          Length = 248

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 64/211 (30%), Gaps = 9/211 (4%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS- 91
           F  Y +  +    +    +     +      +         D  + +      P  W   
Sbjct: 37  FDYYGLVRSPKPDQNPMSLVLAGRWPEKWPQVYITKKFVLIDPAIRYLAQAQRPFRWSET 96

Query: 92  --IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
                +       Q  +          G  FP+         +      + L    I+  
Sbjct: 97  LTAFSQDPHFKRMQRMMMDAQRFGLEEGYIFPIHGRGGLLANMTIGGRSVELTPIEIMLF 156

Query: 150 HGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                       E+  +    +        LT RE   L   G+G TS E+++ L +S H
Sbjct: 157 DTVAKCAFWRLAEINGEDELLSMVQKVDVRLTRRELEILNYLGEGMTSNEMSKLLEISNH 216

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV+ Y+     KL+A NR   +A A R G I
Sbjct: 217 TVDWYVNELQDKLNAKNRQHMVAIAYRLGLI 247


>gi|197337087|ref|YP_002158591.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11]
 gi|197314339|gb|ACH63788.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11]
          Length = 252

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G +S +I++ LG S  TV  +L +A +KL+  NR Q+I+KAI  G I
Sbjct: 197 CEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 245


>gi|462556|sp|P12746|LUXR_VIBFI RecName: Full=Transcriptional activator protein luxR
 gi|5726578|gb|AAD48473.1|AF170104_1 regulatory protein LuxR [Aliivibrio fischeri]
 gi|155231|gb|AAA27540.1| luxR protein [Aliivibrio fischeri]
 gi|59800242|gb|AAX07424.1| LuxR [Expression vector pLuxR-wt]
 gi|59800247|gb|AAX07428.1| LuxR-mut [Expression vector pHTSUB-105]
 gi|60594754|gb|AAX29978.1| LuxR [Cloning vector pHTSUB-106]
          Length = 250

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 20  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 76

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 77  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 135

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 136 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 194

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G +S +I++ LG S  TV  +L +A +KL+  NR Q+I+KAI  G I
Sbjct: 195 CEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243


>gi|330888704|gb|EGH21365.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 254

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S++ +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTVDQQMDCALLLASELGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W          +T I    +  VR      
Sbjct: 65  ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLA----NEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +       +    S+    A     + + E     +        LF +  
Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDAALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA+ L  SV TV  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADHLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|254471852|ref|ZP_05085253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp.
           JE062]
 gi|211959054|gb|EEA94253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp.
           JE062]
          Length = 254

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 75/230 (32%), Gaps = 17/230 (7%)

Query: 17  LSPRLHLIQNRIKARNF---ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L  R   +    +   F   A   +         +Q IC L N+  D  +  N     + 
Sbjct: 28  LQARWEELTRFAEKLGFEKGAYIIVPKIEGRVEDRQPIC-LSNHSQDWVEHYNSHHYYFK 86

Query: 74  DDFLFHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
           D  + H  SG   +   W         +        +        G+  P+         
Sbjct: 87  DPGMDHLLSGRK-VDQLWTDYTVRPTSKVDSDFFNDVRSA-GLKFGVTIPL--ECSNKHL 142

Query: 132 VIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSSAARNL------TERETSCLQL 184
           V   S       ++  +A       V+   + LF   +     L      T RE  CL  
Sbjct: 143 VGGASFASCERTQLGFDAQMTSNYPVLKGAVHLFHTYAQEPETLSEFFGFTPREHECLLW 202

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  ++EIA  L LS  TV  ++  A  KL   NR  A+A+A+ F  +
Sbjct: 203 LTAGRANKEIAHILNLSEKTVEHHIKRACKKLRVTNRTHAVARAMTFQLL 252


>gi|218663535|ref|ZP_03519465.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 240

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 67/223 (30%), Gaps = 4/223 (1%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +  E+   +  +   +    F + T+ +          I  + N+  +  D  +      
Sbjct: 19  THYEVFKYMKGLTQDLGMTAFLIMTLPTVEFVEIGATKI--ITNWPAEMVDYYDAHNLMV 76

Query: 73  GDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
               +        P  +                 + L        G  FP+       G 
Sbjct: 77  DSPVIRRMLRSTSPFNYDVEAINTDRGGGKKSTVIDLFRRYGMEKGAYFPLHDAAGGRGA 136

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           +  +        E+          +     +L           T  E  CL+L   G  S
Sbjct: 137 MSISGSRNFSMIEMAKIL-FIATLIYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGGRKS 195

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA+ L LS + VN ++GS   KL    R QA+  A+R   I
Sbjct: 196 SEIAKLLHLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|313500551|gb|ADR61917.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 235

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 10/222 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
                +  +  +  +     +N  +    +   +    NY  +  +          D   
Sbjct: 19  QKLFDIAVHLAQDLDMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAA 78

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              +S  +P++W     +   +        +        G    +    H    +     
Sbjct: 79  NLSHSSTMPVLWTDELYKEAPQ-----FREMACLHGLRHGWTQSLHDQQHNESQISVARP 133

Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSE 192
              +    + +        C+ +     E            ++ERE   L+ +  G T+ 
Sbjct: 134 NGPIDEVELYDKAGSVQWLCHALHAVLGEHHLNALCPPQPKMSERELEVLKWSAAGKTAA 193

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++A  L LS  TVN ++ S   K +A N+  AIA A   G+I
Sbjct: 194 DVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|330958109|gb|EGH58369.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 254

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 90/248 (36%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +++L +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSAATLDQQMDCALLLASHMGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W          +T I    +  VR      
Sbjct: 65  ADWHSLWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDLHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLEL--FKK 166
              G+  P+ +       +           L  A + + E     +        L   K 
Sbjct: 125 MTCGVTAPIHMPKGGFATLTGLRSDNSDIALEDARQSLAEFGLLAHAFQEVAYPLFDEKM 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV TV  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCTAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|213966697|ref|ZP_03394848.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato T1]
 gi|301383210|ref|ZP_07231628.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059053|ref|ZP_07250594.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato K40]
 gi|302133729|ref|ZP_07259719.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928547|gb|EEB62091.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato T1]
 gi|331018431|gb|EGH98487.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 254

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S+L +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W          +T +    +  VR      
Sbjct: 65  ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLQTFLTDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +       +           L  A + + E     +        LF +  
Sbjct: 125 MTCGLTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV TV  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|294851589|ref|ZP_06792262.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|294820178|gb|EFG37177.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 238

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 79/234 (33%), Gaps = 17/234 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +L   +    + +    F   +   ++              +           
Sbjct: 14  QSADSADQLFEIVKNYAHDL---GFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQ 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    + +  +IW      +  +                 GI+ P       
Sbjct: 71  NYAEIDPLLRRGVNSIDLLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQGV 125

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERETS 180
            G + F      L    I        Q++T+ L L   ++    A       +LT RE  
Sbjct: 126 FGLLSFVRSGPALTPGEISML-RRQLQMLTNLLHLSMYERVDVPAISCIGDVSLTLRERE 184

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 185 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|148258315|ref|YP_001242900.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410488|gb|ABQ38994.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 242

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 68/218 (31%), Gaps = 2/218 (0%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
           +  L   +  I    F  Y +       +  Q     + +  +  D+         D   
Sbjct: 24  ASVLSQFEKMIGDLGFHAYIMAGVPAPGQSLQHTILANGWPSEWFDLYAREQFHRYDPIP 83

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
            H  S L P  W     +   E      +          G   P+       G V    E
Sbjct: 84  RHCLSTLNPFAWSEAPYDRNDEPGAHEVMTRARDFRLNEGFCVPIHYDD-AVGAVSLAGE 142

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAE 196
              LA +     H       +    L +  S   +R L+  E   L  A  G T+ E A 
Sbjct: 143 RPNLAPDARGALHLISIFTHSRLRALARATSGGQSRRLSRIEAEVLSWAARGKTAWETAR 202

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LG+S   V  +L  A  KL+  N+   +A A+  G I
Sbjct: 203 ILGVSERNVRWHLEEAQRKLETKNKTATVATALVNGEI 240


>gi|299132715|ref|ZP_07025910.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
 gi|298592852|gb|EFI53052.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
          Length = 241

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 11/217 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L      +    FA  +++          +   + NY ++  D          D  
Sbjct: 21  LRTVLADAGAALDLSCFAYLSMSPRRGG-----VPELISNYPVEWTDHYLREHYERVDPV 75

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    +G  P  W        +  S    +          G   P+         V F +
Sbjct: 76  IAVALAGTEPFEWGQEFAAKRLSKSQCALLDEAAQFGIRCGFTVPIHDSRGPVAAVTFAA 135

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYT 190
           +      +  IE + +  Q++  +     +R  +         L+ RE  CL+ A  G +
Sbjct: 136 DERRPTFQRCIEQNRSVLQLMAMYFHAHARRRLSINRVIDGVALSPREFECLEWAAQGKS 195

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + EI   L +S  T   +L +A +K       QA+AK
Sbjct: 196 AWEIGRLLNISRRTAAFHLDNAKMKFGVRTICQAVAK 232


>gi|170727337|ref|YP_001761363.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812684|gb|ACA87268.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 250

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLI----CELHNYDLDSGDIPNILIETYGDDF 76
           +  +QN ++    AL  +    D     + +        +  ++  +I       Y D  
Sbjct: 36  VKALQNLLEVDGVALINLILRPDHTITIERVVSSGFGFESKSVEWDNIYQKKKFQYIDPV 95

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA---FPVRLGFHKNGYVI 133
           +    S      W S+     +       +     +    G +   F  R  + +     
Sbjct: 96  VSCSASFRRSFNWASVPSMITLSEVQFNFLERAQEMGLKEGASIGSFSTRQIYKELTITS 155

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                  L  E +                L       A  LT RE+  L  + +G +S E
Sbjct: 156 VCG--CSLNPEQLASLELINAVSAQAMKRL----ILPAEKLTGRESEILAWSSEGKSSWE 209

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I     ++  TV  +L +   KL+  NR QAI  AIR G I
Sbjct: 210 IGMICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRLGLI 250


>gi|28871673|ref|NP_794292.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854925|gb|AAO57987.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 254

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S+L +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTLDQQMDCALLLASDMGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W          +T +    +  VR      
Sbjct: 65  ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLQTFLTDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +       +           L  A + + E     +        LF +  
Sbjct: 125 MTCGLTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV TV  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|288960338|ref|YP_003450678.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912646|dbj|BAI74134.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 287

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 71/225 (31%), Gaps = 11/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           + S  L  I + +   N   +            + +  L  Y                D 
Sbjct: 68  DKSHFLSRIIDSVGPFNVTYF---GTQCTSSPDRHVNLLTTYSEKWRMRYFDRRYENIDP 124

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            L       +P+ W  +                    +   G+ F +R    +   V   
Sbjct: 125 VLSAARRATMPVDWDQLP--KTDSGVEDFIADALCYGIRLQGVTFSLRDMHQRLAIVSLQ 182

Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGY 189
           S        V     I +       + +  +      +      L+ RE   L  A  G 
Sbjct: 183 SNDDPAVWRVRRPRIIPDFIHFSLALHSAMVSSEPDDAEEVPCKLSPREREVLDWASRGK 242

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS E    LGLS  TVN YL +A  K++A  ++QA A+A+R G I
Sbjct: 243 TSWETGMVLGLSEKTVNFYLRNACQKMNAATKVQAAAQAVREGLI 287


>gi|190890862|ref|YP_001977404.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190696141|gb|ACE90226.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 240

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 69/224 (30%), Gaps = 4/224 (1%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++  E+   +  +   +    F + T+ +          I  + N+  +  D  +     
Sbjct: 18  NTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKI--ITNWPAEMVDYYDSHNLM 75

Query: 72  YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
                +        P  +          E      + L        G  FPV       G
Sbjct: 76  VDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGRG 135

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +  +        E+          +     +L           T  E  CL+L   G  
Sbjct: 136 AMSISGSRNFTMLEMAKIL-FIATLIYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGGRK 194

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S EIA+ L LS + VN ++GS   KL    R QA+  A+R   I
Sbjct: 195 SSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|283478850|emb|CAY74766.1| DNA-binding transcriptional activator SdiA [Erwinia pyrifoliae DSM
           12163]
          Length = 242

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 10/216 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           I+ +++      Y++      P  +       NY  D  +          D  L    S 
Sbjct: 32  IEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPEDWLEHYFREDFYQLDPVLKMCGSP 91

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----L 139
               IW     +    SSG            F G++  V       G    ++      +
Sbjct: 92  GK--IW---LWDDEAISSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSMSTANSLKTI 146

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198
            L   + ++        +   +++     +  + +L++RE   L+   +G TS EI+  L
Sbjct: 147 ELTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLIL 206

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S +TVN +      + +A N+ Q  + A   G I
Sbjct: 207 SISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 242


>gi|259908860|ref|YP_002649216.1| Regulatory protein [Erwinia pyrifoliae Ep1/96]
 gi|224964482|emb|CAX55992.1| Regulatory protein [Erwinia pyrifoliae Ep1/96]
          Length = 240

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 10/216 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           I+ +++      Y++      P  +       NY  D  +          D  L    S 
Sbjct: 30  IEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPEDWLEHYFREDFYQLDPVLKMCGSP 89

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----L 139
               IW     +    SSG            F G++  V       G    ++      +
Sbjct: 90  GK--IW---LWDDEAISSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSMSTANSLKTI 144

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198
            L   + ++        +   +++     +  + +L++RE   L+   +G TS EI+  L
Sbjct: 145 ELTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLIL 204

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S +TVN +      + +A N+ Q  + A   G I
Sbjct: 205 SISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|301305257|ref|ZP_07211354.1| autoinducer binding domain protein [Escherichia coli MS 124-1]
 gi|300839463|gb|EFK67223.1| autoinducer binding domain protein [Escherichia coli MS 124-1]
          Length = 226

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 13/216 (6%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   +     +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIEFQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F+         L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
             L+   +G TS EIA  L +S +TVN +  +   K
Sbjct: 186 EILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKK 221


>gi|289624509|ref|ZP_06457463.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330869296|gb|EGH04005.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 261

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 62/220 (28%), Gaps = 15/220 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L++L        + I    +A ++         R      L NY                
Sbjct: 24  LRQLIEDFENDLHHIGDFTYAYFSTPKT-----RNVKPVILSNYPDSWLKSYVASNYHLI 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + H    + P  W+  +       +     R        +G  F +         + 
Sbjct: 79  DPIIKHAWHSITPFFWREARNAAQGVETDDFLKRSAK-YQLSSGATFTLHDASGLFAALS 137

Query: 134 FTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             +       +  I                ++I            A   L+ RET  L+ 
Sbjct: 138 LCNARQQKDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
              G +  EIAE   +S  TV  ++ + + KL+     QA
Sbjct: 198 VAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQA 237


>gi|157370075|ref|YP_001478064.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321839|gb|ABV40936.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 238

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S  +    L  +    +A  F  ++      +P  +  +    N+     +    L   
Sbjct: 14  TSQPDRKVFLSQLAPCAQALGFEYFSYTVFSCYPASRPKMLIEGNFPECYLEDYRKLRVY 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +   +   L   W         +   +L  R+        G +  V+  + + G 
Sbjct: 74  LQDPVIEQAHHSTLQFYWDE----HFYQDKPELWWRMAQ-FGIREGWSQSVKDCYGRLGI 128

Query: 132 VIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA--RNLTERETSCLQL 184
           + F  + + + +      +          V     E     +  A    LT RE   L+ 
Sbjct: 129 LTFAGKSIPVQSPQASARNETFFLWLAQMVHKTLREALISVNDEAIKDVLTLREKDILRW 188

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             +G TSEE A  +GLS  TVN ++G++  KL  
Sbjct: 189 CSEGKTSEETALLMGLSERTVNFHIGNSIKKLSV 222


>gi|27802474|gb|AAO21112.1| TraR [Rhizobium leguminosarum bv. viciae]
          Length = 234

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 68/222 (30%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   L    N      FA                +   ++Y  +  DI      +  D  
Sbjct: 21  IKSALKSFANTYGFERFAY--------LQTEGAEVRAFNSYPEEWQDIYLGNQYSRIDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +      +    W +        S  +            +G+  PV   F     + F S
Sbjct: 73  VTEAKRRMEMFSWTANDWPARGTSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMMLTFAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192
                    + +A  A   V+     L         +  R L+ RE  CL  A  G ++ 
Sbjct: 133 SRQTADGSKLRDAQKAIQAVLAIHYRLKIIAATTIVAPKRLLSPREAMCLMWAARGKSAP 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E A   G++  TV  YL  A  KL+A    Q +A A   G +
Sbjct: 193 ETAMLTGINPRTVQHYLDKAREKLEAATVPQLVAIAKDHGLV 234


>gi|170700574|ref|ZP_02891575.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134522|gb|EDT02849.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 240

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 69/225 (30%), Gaps = 10/225 (4%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN----YDLDSGDIPNILIETY 72
           L    +L+ N   +  F  Y ++    F  R             Y  +  +         
Sbjct: 17  LRSLTNLLANAAHSLGFPCYAVSRVSRFRSRSSPRIFAETIHVHYPDNWVNHYLAHDYGL 76

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D           P  W  I     +    +  +          GI+ P+          
Sbjct: 77  VDPVHRAAFIYNSPYRWSDIP---GLSEPERRVLGEAHDAGLTHGISIPIYEPDGSVLLF 133

Query: 133 IFTSE-FLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189
            F+     +     +  A  A      +F  L            L+ R+  CL   G G 
Sbjct: 134 SFSGPPHRVNTALNVRRAQLASLLFHAEFQRLAPIPHVEPPTLRLSPRQQECLYWVGQGK 193

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS EI   +G+S HTV+ +L  A   L+  +R +A   A  +G I
Sbjct: 194 TSPEIGMIMGISHHTVDYHLSEAMKILNVNSRTKAAVFASTYGLI 238


>gi|115523303|ref|YP_780214.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517250|gb|ABJ05234.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 237

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 11/233 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++++S+ +L   L   +N     +   +  +        Q     L  YD         
Sbjct: 10  IERANSVADLGRILVDWRNESGVAHLVYHATHVPAC---EQPNPVLLLTYDDAWVKRYVE 66

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  +      +LPI W ++  E     +       E   +   G+  P+R    
Sbjct: 67  RNYFSIDPVVVAGRDAVLPIDWMAV--EHDTPEARHFFAEAESFGVGRHGLTLPIRGPAA 124

Query: 128 KNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSC 181
           +      T+              + + H   + +    + L   R     R L+ RE  C
Sbjct: 125 ERALFTVTTNATDDHWHRWRFSYMKDFHLLAHYLHDRAMRLAGLRLDHVMRPLSSRERQC 184

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G T  +IA +L LS   V+ YL +A  KLD     QAIAKA+R   +
Sbjct: 185 LNGLVRGRTPGQIAGELDLSGSAVHGYLRTARRKLDCATVEQAIAKAVRLDLL 237


>gi|170719977|ref|YP_001747665.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757980|gb|ACA71296.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 236

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 9/221 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
                L  +  +        +   +    +   +    NY L   +          D   
Sbjct: 19  QKVFDLAVHLAQDLGMEFMGLKLRIQLAAQAPKLYLYSNYPLAWIERYQRDEFYKQDPAA 78

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              ++   P++W         +                 G    +    H    V     
Sbjct: 79  ALSHTSTEPVLWTDELYSEAPD-----FREQACKHGLRHGWTQSLHDLRHNETQVSVARP 133

Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           F  +    + +        C+ +     E    + S+   +++RE   L+ +  G T+ +
Sbjct: 134 FGKIDIHELYDKAGQVQWLCHTLHDTICEHHLAKLSSPLKMSDRELEVLKWSAAGKTAAD 193

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +A  L LS  TVN ++ S   K +A N+  A+A A+  G I
Sbjct: 194 VACILSLSQSTVNFHIRSVITKTNASNKAGAVAIAMMRGLI 234


>gi|541659|dbj|BAA06490.1| LasR [Pseudomonas aeruginosa]
          Length = 239

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 74/246 (30%), Gaps = 23/246 (9%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  ++SS   E S  L  + + +                 +  +    + NY   
Sbjct: 3   LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +  +       D  + H    +LPI W   +                       G+  
Sbjct: 60  WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168
           P+     + G +  +     +  E   EA+     V+     L            F+   
Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPV 171

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LT  E   LQ    G TS EI+     S   VN ++G+   K    +R  A   A
Sbjct: 172 SKPVVLTSWEKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231

Query: 229 IRFGYI 234
           +  G I
Sbjct: 232 VNLGLI 237


>gi|310767240|gb|ADP12190.1| DNA-binding transcriptional activator SdiA [Erwinia sp. Ejp617]
          Length = 240

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 10/216 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           I+ +++      Y++      P  +       NY  D  +          D  L   +S 
Sbjct: 30  IEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPEDWLEHYFREDFYQLDPVLKMCSSP 89

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----L 139
               IW     +    SSG            F G++  V       G    ++      +
Sbjct: 90  GK--IW---LWDDEAMSSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSVSTAKSLKTI 144

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198
            L   + ++        +   +++     +  + +L++RE   L+   +G TS EI+  L
Sbjct: 145 ELTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLIL 204

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S +TVN +      + +A N+ Q  + A   G I
Sbjct: 205 SISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|77458474|ref|YP_347979.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382477|gb|ABA73990.1| putative transcriptional regulator, LuxR family [Pseudomonas
           fluorescens Pf0-1]
          Length = 239

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 74/231 (32%), Gaps = 9/231 (3%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           L  + + +L  +   +           F L++  ++      +++     ++  D   + 
Sbjct: 14  LDIEAAPTLVAIQKAVRGFAGAYGYDRFVLFS-ATSASEDVVERIYWVEGDWFGDGIAVD 72

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRL 124
                        H         W  +QE++     G+L   +     P   G+  PV  
Sbjct: 73  -AQTYVQRCPVTRHLLDARESFFWSKVQEQS-----GELYRLVRVPSGPGVHGLQIPVFG 126

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQ 183
                G +    E +  +  V +               L +      A  L+ RE   L 
Sbjct: 127 PQGLEGAMSLGGEQIDASARVRLALGMLASVAFFSARRLLEAPLDETAGKLSTREREVLA 186

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G    +IA  LGLS  TV  +L SA   L      QAI  AIR G I
Sbjct: 187 WVAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEI 237


>gi|310686584|gb|ADP02958.1| LuxR [Cloning vector pLR3]
 gi|310686589|gb|ADP02962.1| LuxR [Cloning vector pLR4]
          Length = 269

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 39  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 95

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 96  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 154

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 155 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 213

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G +S +I++ LG S  TV  +L +A +KL+  NR Q+I+KAI  G I
Sbjct: 214 CEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 262


>gi|47177072|ref|YP_015683.1| hypothetical protein pHCG3_p118 [Oligotropha carboxidovorans OM5]
 gi|47115463|emb|CAG28516.1| probable TraR [Oligotropha carboxidovorans OM5]
          Length = 239

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 71/217 (32%), Gaps = 10/217 (4%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             +++  ++  F  +          R    C L  Y  +   +         D  +    
Sbjct: 29  QALRHFCESNGFDRFA-----HLNVRSTETCVLTTYPAEWQRLYFDKKYALIDPVVISAK 83

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
             +    W         +   +   R        +G++ P+R  F     +   SE   +
Sbjct: 84  RNMEIFSWSQDDASKYSKDVKRFF-READDFGIRSGLSIPIRTPFGGTAILTLASEQRRV 142

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEK 197
               I +   A   V      L +  ++  R     LT RE +CL  A  G T  EIA+ 
Sbjct: 143 DFAGIQDTVRAMNAVAFAHAHLNRVAAAPCRRTKYELTPREVTCLTWASLGKTMSEIADL 202

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L + V TV  YL  A  KL   N   A+  A+    I
Sbjct: 203 LQIDVRTVRNYLDLAREKLGGSNIAHAVRLAVMQHLI 239


>gi|155233|gb|AAA27541.1| luxR protein [Aliivibrio fischeri]
 gi|455385|gb|AAA27551.1| regulatory protein [Aliivibrio fischeri]
 gi|225902|prf||1403259A luxR gene
          Length = 250

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 20  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 76

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 77  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 135

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 136 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 194

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G +S +I++ LG S  TV  +L +A +KL+  NR Q+I+KAI  G I
Sbjct: 195 CEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243


>gi|330942061|gb|EGH44732.1| transcriptional regulator LasR [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 239

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 71/224 (31%), Gaps = 10/224 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
                 ++    A            D          L +Y      I +    +  D  +
Sbjct: 17  RSWFEALKANTCALGCDGLLFALKSDGNADNSQAALLSDYSQAWRAIYDANDYSRIDPVV 76

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
            H  S   PI+W     +T +            G     G++ P+     + G +    +
Sbjct: 77  SHCMSSTSPIVWNDSIFKTPL---QLEFREESKGHGVVQGVSLPLHGMAGQVGVLSVRLD 133

Query: 138 FLMLA------NEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYT 190
            +           ++          +  FL L  ++  +    L+ RE   L+ +  G T
Sbjct: 134 SIPQHQLKYHIARILPGLALIRDYAVDTFLSLADEREPNNIVQLSHRELEVLKWSAFGKT 193

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA  L  S   +N +      K +  +R  AI KA++ G +
Sbjct: 194 TWEIARILSCSEANINYHFAKVRKKFNVGSRRMAIVKALQTGLL 237


>gi|159044364|ref|YP_001533158.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912124|gb|ABV93557.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 265

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 2/193 (1%)

Query: 44  FPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ 103
                +     H +  +  DI         D          +P +W  + E T +     
Sbjct: 65  VSATPRFHIIAHGFPREWVDIYVDDHLYEIDPIPALAQRRAVPFLWSEVAELTRLAEEQA 124

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--NEVIIEAHGACYQVITDFL 161
             +          G+A  V     ++GYV               + E       +     
Sbjct: 125 AFLERSMPARVGDGVAIQVFGPNMRHGYVGMGFGDRPRDVTAPQLAEYQLVSQLMHLRAC 184

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L ++R+ +   L+ RET  L     G +   IA+ LGLS HTV+  +     KL+  +R
Sbjct: 185 RLIEERNRSEIALSARETEVLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLEVFDR 244

Query: 222 IQAIAKAIRFGYI 234
             AI KAI  G +
Sbjct: 245 TAAILKAINLGLV 257


>gi|330879513|gb|EGH13662.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 254

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S+L +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W          +T I    +  VR      
Sbjct: 65  ADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLQTFITDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +       +           L  A + + E     +        LF +  
Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV T+  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|209886745|ref|YP_002290602.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans
           OM5]
 gi|209874941|gb|ACI94737.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans
           OM5]
          Length = 195

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 62/178 (34%)

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
           +                D  +           W    +      + +             
Sbjct: 17  FPDGWAARYLDQNYLPRDPIVGRLQKDRNAFSWSESYKSCPEPDNVRAVGGEAADFGLVE 76

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176
           G   P+     +   + F      L+N             I  +L L + R +  + L+ 
Sbjct: 77  GFVIPITTLDQRIAALSFGGARDDLSNRDRSALIFLANFAIGHWLYLRRPRPTCNKTLSP 136

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE  CL  AG+G T  EI+  LG+S  TV  ++ SA  KL+AVN+  AIA A+R   +
Sbjct: 137 RELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREKLNAVNKPHAIAIAMRLKIL 194


>gi|331092883|ref|ZP_04586362.2| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331125377|ref|ZP_04592751.2| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020753|gb|EGI00810.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027159|gb|EGI07214.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 235

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 8/216 (3%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           ++  +    +  Y ++    F   +     +  Y LD             D  + H    
Sbjct: 21  LRKVLCRLGYKTYLLSI-GGFTTNEPSNRIITTYPLDWLKCYEDENFILIDPIVKHCRRH 79

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
            +P+ W   +      S      R         G++ P+R       + +          
Sbjct: 80  FMPLFWGGARRRARGRSKE--FWRARERHGLSQGVSIPLRCREMLGSFNVAHPVDSNEEF 137

Query: 144 EVII-----EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +  +             ++       K     + +LT RET  L+ +G G T+ EI+  L
Sbjct: 138 DDEVNVTFGVLFMLVPFLLEGSQRHLKAPGEQSCSLTMRETEVLKWSGAGKTTWEISRIL 197

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G S  TVN ++ +A+ KL A NR+QA+  A+   +I
Sbjct: 198 GCSERTVNFHIANASRKLGASNRLQAVGMALAQEFI 233


>gi|182679457|ref|YP_001833603.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635340|gb|ACB96114.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 73/222 (32%), Gaps = 7/222 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            SL  +  R+      +    F L+T ++A +    +++     ++      +   L   
Sbjct: 20  DSLSVIQDRIRAFAGPLGYDRFVLFTASAARE-DVVERIYWVEGDWFGTGEAVD-ALTYI 77

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
                  H      P  W   + E+        + R  G      G+  P+       G 
Sbjct: 78  RRCPVNRHILEVSEPFFWTKTRSESGELYQVVRTPRGRG----VHGLQIPIFGPSGLEGA 133

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYT 190
           +    E +  + +  +               L +   SSA   L+ RE   L     G  
Sbjct: 134 MSLGGERIDASPQARLALSLVGTAAFLSARRLLEAPNSSATAKLSHREREILAWTAAGRR 193

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             +IA  LGLS  TV  +L     +L  +   QAI  AIR G
Sbjct: 194 QADIAATLGLSERTVENHLRRIRRRLAVMTTAQAIRVAIRNG 235


>gi|302878668|ref|YP_003847232.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581457|gb|ADL55468.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 69/207 (33%), Gaps = 11/207 (5%)

Query: 36  YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95
             I      P   +   +  NY  D  +        + D    H  S   P+IW     +
Sbjct: 37  LAILPDPRAPIEAEHAFQQSNYSADWLNKYTAEKLHHVDPTFSHCISKSTPLIWS---PK 93

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE---FLMLANEV---IIEA 149
                  +       G    +G+  P+     + G V F S+         +    + E 
Sbjct: 94  IFSAQKQKEMYEEACGYGVKSGVTLPIHGAKGELGIVCFVSDTKPDKRFHRDANHHLPEL 153

Query: 150 HGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                 ++   L+  K        +  T RE  CL+ +  G +S EI   L  +  TVN 
Sbjct: 154 ACFRDFILESSLQFMKPSRQVENPISVTHRELECLKWSASGKSSWEIGHILNCTEATVNF 213

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   K    +R QAI KAI  G I
Sbjct: 214 HFSNIRRKFSTTSRQQAIVKAISLGLI 240


>gi|218677689|ref|ZP_03525586.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 4/224 (1%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++  E+   +  +   +    F   T+ +  +       I  + N+  +  D  +     
Sbjct: 18  NTHYEVFKYMKGLTQDLGMNAFLFMTLPTVDNVEIGATKI--ITNWPAEMVDYYDAHSLL 75

Query: 72  YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
                +        P  +          E      + L        G  FPV       G
Sbjct: 76  IDSPVIRRMLRSTSPFNYDVEAINTNRGEGKKSTVIELFFRYGMEKGAYFPVHDAAGGRG 135

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +  +        E + +       +     +L           T  E  CL+L   G  
Sbjct: 136 AMSISGPRNFSMIE-MAKLLFIATLIYDRLSQLTLNEKHKPIEFTPGELDCLRLTAGGRK 194

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             EIA+ L L+ + VN ++GSA  KL    R QA+  A+R   I
Sbjct: 195 GSEIAKLLDLTENVVNNHIGSAIKKLGCTTRTQAVVSALRLNII 238


>gi|20804002|emb|CAD31579.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti R7A]
          Length = 241

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 13/230 (5%)

Query: 4   NTLTGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
            TL  + S S+   +    L           FA  ++        R      + NY    
Sbjct: 6   ETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSL-----VSDRVTKPRLISNYHSGW 60

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  +        P  W        I +  Q             G+  P
Sbjct: 61  TSHYLRHQYERIDPVIEWARCSEYPFQWGPDFGHAGISTRQQQLFDEAAEFGICCGLTIP 120

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLT 175
           +         + F ++ L      + E +    +++     +  +R      +    +LT
Sbjct: 121 LVDRRGGVAAMTFAADRLDPTFLRVAEKYEQALEIMAMCFHIGVRRKLSCGLAVDGVSLT 180

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            RE  CL+    G ++ EI   LG+   T   +L +A  KL    + QA+
Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230


>gi|307141914|gb|ADN34749.1| transcriptional activator CmrR [Pseudomonas sp. CMR12a]
          Length = 235

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 16/226 (7%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           S  ++  R+      ++   F        + FP  ++ +   +NY        +      
Sbjct: 17  SESQIVKRIQEAATMLE---FEYCAYGLQVIFP--EEKVVMFNNYPRQWQRRYDTENYLA 71

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D  +        PIIW        +     +            G +            +
Sbjct: 72  IDPIVAQGRQSQTPIIWAD-----SVSREAPIFWEEARAAGLKVGWSQSSINAAGAASML 126

Query: 133 IFTSEFLMLANEVI----IEAHGACYQVITDFL-ELFKKRSSAAR-NLTERETSCLQLAG 186
             +     +  + +    I+               +  + ++     LT RE   L+  G
Sbjct: 127 SLSRSSQPITRQELDANEIKMRWLVNVAHLALSNRISTRLANPYEVKLTSREKEVLKWTG 186

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            G TS EI+  L +S +TVN ++ ++ +KL A N+  A+ +A   G
Sbjct: 187 SGKTSFEISCLLAISENTVNFHIKNSILKLSAANKTAAVIQAFLTG 232


>gi|304394107|ref|ZP_07376030.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130]
 gi|303293547|gb|EFL87924.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 6/230 (2%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
             +  +  ++      + N   A  F++ T++           +  ++N+D +   + + 
Sbjct: 13  ISRLETAYDVFRYARRLGNDFGASRFSILTLDKQTSAI---SDLGVVNNWDPELIAVYDE 69

Query: 68  LIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
              +     L HF +G   + +      +     S  L+  L        G   PV  G 
Sbjct: 70  NGLSKASPVLGHFETGNRVMTYDMDTMLQERAPESAALARELFNDFDMKYGACCPVNDGK 129

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184
              G ++F+   L+L  +     H     +    +++     + +   +L+ RE  CL  
Sbjct: 130 GNRGGLVFSGNELVLNPDDGAMLHLLSNYLYDHLVQISATSVTRSEMPSLSGREMDCLSH 189

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G TS+E A  L LS HTV  YL  A  KL+AVNR+ A+AKA+R G +
Sbjct: 190 AALGKTSKETARDLELSDHTVTHYLALACKKLEAVNRVHAVAKALRLGLL 239


>gi|188534209|ref|YP_001908006.1| Regulatory protein [Erwinia tasmaniensis Et1/99]
 gi|188029251|emb|CAO97128.1| Regulatory protein [Erwinia tasmaniensis Et1/99]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 15/243 (6%)

Query: 2   SEN-TLTGKKSSSLQE----LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN 56
           SEN  +      S  +    ++    +I+ ++K      Y++      P  +       N
Sbjct: 3   SENYFIWRADLKSAYDNGSGIAHITRVIEQQLKELELDFYSLFIRHPVPFTRPKTFLYSN 62

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
           Y  +  +          D  L   +      +W      +     GQ           + 
Sbjct: 63  YPQNWLEHYWREDFYQLDPVLKICSVPGKVWLWDDEDLSS-----GQRVFDDARIHGIYH 117

Query: 117 GIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
           GI+  V       G +  ++    + ++L  E+ ++        +   +++     +  +
Sbjct: 118 GISCSVMASNRSVGILSMSTANALKNIVLTPEIELKIQYISELTMAALIDINDISMATTK 177

Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L+ERE   L+   +G TS EI+  L +S +TVN +      + +A N+ Q  + A   
Sbjct: 178 LDLSERELEVLKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAI 237

Query: 232 GYI 234
           G I
Sbjct: 238 GLI 240


>gi|323139012|ref|ZP_08074072.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242]
 gi|322395766|gb|EFX98307.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242]
          Length = 267

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 79/231 (34%), Gaps = 11/231 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++  ++  S  +    N     N A   +N       R         Y ++         
Sbjct: 27  RADRVEAASDIITGFTNAWGLHNVAYAALNMPSPGAARP---LLSMTYSVEWQKHYAQSG 83

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +     G+LPI W  I     I          +   +   G++ P+R    + 
Sbjct: 84  YVDIDPIVRSGLGGILPIDWSEIDRGDPIIRK--FFGEAQELDVGANGMSIPIRGRHGEF 141

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQ 183
                TS    L       ++I +     +      L    + +     +L  RE SCL+
Sbjct: 142 ALFTVTSNENALEWRAIRRDLIRDLMVVAWNFHAAALRSCGELAEPGDVHLPLREASCLR 201

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G T EEI   L +S HTV  +L SA  +L+  N    +AKA+  G I
Sbjct: 202 WKALGKTDEEIGRILVISPHTVRFHLESARARLNTANTTHTVAKALALGLI 252


>gi|161724877|emb|CAO85750.1| LasR protein [Pseudomonas aeruginosa]
          Length = 239

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 74/246 (30%), Gaps = 23/246 (9%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  ++SS   E S  L  + + +                 +  +    + NY   
Sbjct: 3   LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLHKDSQDYENAFIVGNYPAA 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +  +       D  +      +LPI W   +                       G+  
Sbjct: 60  WHEHYDRTGYARVDPTVSQCTQNVLPIFW---EASIYQTRKQHEFFEEASAAGLVYGLTM 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRS 168
           P+     + G +  +     +  E   EA+     V+     L            F+   
Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPV 171

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LT RE   LQ    G TS EI+     S   VN ++G+   K    +R  A   A
Sbjct: 172 SKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMA 231

Query: 229 IRFGYI 234
           +  G I
Sbjct: 232 VNLGLI 237


>gi|86356800|ref|YP_468692.1| transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86280902|gb|ABC89965.1| probable transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 240

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 8/226 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++  E+   +  +   +    F + T+ +          I  + N+  +  D  +     
Sbjct: 18  NTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKI--ITNWPAEMVDYYDAHNLM 75

Query: 72  YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
                +        P  +          E      + L        G  FPV       G
Sbjct: 76  VDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGRG 135

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDF--LELFKKRSSAARNLTERETSCLQLAGDG 188
            +  +      +   + +       +      L L +K    A   T+ E  CL+L   G
Sbjct: 136 AMSISGSR-NFSMVEMAKLLFIATLIYDRLSQLTLNEKHKPVA--FTQSELDCLRLTAGG 192

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             S EIA+ L LS   VN  +GS   KL    R QA+  A+R   I
Sbjct: 193 RKSSEIAKLLDLSESAVNNQIGSVIRKLGCTTRTQAVVSALRLNII 238


>gi|13475096|ref|NP_106660.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025847|dbj|BAB52446.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 241

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 13/230 (5%)

Query: 4   NTLTGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
            TL  + S S+   +    L           FA  ++        R      + NY    
Sbjct: 6   ETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSL-----VSDRVTKPRLISNYHSGW 60

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  +        P  W        I +  Q             G+  P
Sbjct: 61  TSHYLRHQYERIDPVIEWARCSECPFQWGPGLGHAGISTRQQQLFDEAAEFGICCGLTIP 120

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD------FLELFKKRSSAARNLT 175
           +         + F ++ L      + E +    +++          +L +  +    +LT
Sbjct: 121 LVDRRGGVAAMTFAADRLDPTFLRVAEQYEQALEIMAMCFHIGVRRKLARGLAVDGVSLT 180

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            RE  CL+    G ++ EI   LG+   T   +L +A  KL    + QA+
Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230


>gi|218463347|ref|ZP_03503438.1| transcriptional regulator, LuxR family protein [Rhizobium etli Kim
           5]
          Length = 240

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 66/223 (29%), Gaps = 4/223 (1%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +  E+   +  +   +    F   T+ +          I  + N+  +  D  +      
Sbjct: 19  THYEVFKYMKGLTQDLGMNAFLFMTLPTVDIVEIGATKI--ITNWPAEMVDYYDAHNLMI 76

Query: 73  GDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
               +        P  +                 + L        G  FPV       G 
Sbjct: 77  DSPVIRRMMRSTSPFNYDVEAINTNRGGGKKSTVIELFNRYGMEKGAYFPVHDAAGGRGS 136

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           +  +        E + +       +     +L           T  E  CL+L   G   
Sbjct: 137 MSISGSRNFSMIE-MAKLLFIATLIYDRLSQLTLNEKHKPIEFTRSELDCLRLTAGGRKG 195

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA+ L L+ + VN ++GS   KL    R QA+  A+R   I
Sbjct: 196 NEIAKLLDLTENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|330809090|ref|YP_004353552.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377198|gb|AEA68548.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 272

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 13/226 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNILIETYGD 74
           +    L+ +  ++    F  Y I+     P     L   +  +     +          D
Sbjct: 34  DWERLLNKVLRQL---GFGSYLISLGPVAPRDTDPLAGLITTFPKRWLEHYRCDGLIEID 90

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             L H    L+P+ W    E        +            +G++ P+R      G +  
Sbjct: 91  PILRHCRRELVPLFWD--SERRRARGRSRHFWEQREQHGLRSGVSIPLRY-EMLRGTLSV 147

Query: 135 TSEFLMLANE------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
             +   +  +       + +       ++       ++ +   ++LT +E  CL  A +G
Sbjct: 148 AFDDTQITEQKGFSNPAVYQLFMLIPYLLAGIRHQLQRPAQPRQDLTPKEMDCLYWASEG 207

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+ EI+  L  S  T++ +L +A  KL +V+R QA++ A+  G +
Sbjct: 208 KTTWEISHILTCSERTIDFHLLNARRKLGSVSRQQAVSAAVACGLV 253


>gi|110634656|ref|YP_674864.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285640|gb|ABG63699.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 265

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 1/224 (0%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            + +E++  L +   R    +     I  +    R Q     L  +  +       L   
Sbjct: 41  RTTEEVNHSLMIFLQRYGVTSLIAGMIPPSNSSRREQLSYVLLDGWPEEWKRRYFSLGYL 100

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
           + D  +     G     W  I+E   +   G+  +         AG+ F       K   
Sbjct: 101 HRDPAIHLVRRGCPHFHWSEIREHCSVCPIGRRIMNEAREFQLRAGVTFSFPTLESKTFG 160

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYT 190
            +  +E L LA   +          +   L L       +  +L+ R+   +  A +G T
Sbjct: 161 FLVAAEELDLAETDLFTLQFVAAFGLGCALTLAGGVVGRSNVHLSRRQREVVAWASEGLT 220

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++EIAE+L +SVHT + +L +   +L   N + A+A+A+R G I
Sbjct: 221 ADEIAERLNVSVHTADMHLRAVRTRLGVANTVHAVAEALRLGLI 264


>gi|107100865|ref|ZP_01364783.1| hypothetical protein PaerPA_01001895 [Pseudomonas aeruginosa PACS2]
 gi|296390203|ref|ZP_06879678.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAb1]
          Length = 223

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 68/231 (29%), Gaps = 23/231 (9%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           E S  L  + + +                 +  +    + NY     +  +       D 
Sbjct: 2   EWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDP 58

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + H    +LPI W   +                       G+  P+     + G +  +
Sbjct: 59  TVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLS 115

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLEL------------FKKRSSAARNLTERETSCLQ 183
                +  E   EA+     V+     L            F+   S    LT RE   LQ
Sbjct: 116 -----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEVLQ 170

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G TS EI+     S   VN ++G+   K    +R  A   A+  G I
Sbjct: 171 WCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 221


>gi|330941017|gb|EGH43939.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 262

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 11/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYGD 74
           +    L  +  ++    FA Y I+ +   P     L   +  +     D          D
Sbjct: 16  DWERHLRKVMRQL---GFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDCYCCDGLLDID 72

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVI 133
             L H    L+P+ W             +   +         G++ P+R         V 
Sbjct: 73  PILKHCRQELVPMFWAQQGRRARG--RTRHFWQRREEHGLCHGLSIPLRYERLRGTLSVA 130

Query: 134 FTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           F      E    A+            +++     ++  +    +LT RE  CL  A  G 
Sbjct: 131 FDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECLYWASAGK 190

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS EI+  L  S  TV+ +L +A  KL +V+R QA+  A   G +
Sbjct: 191 TSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235


>gi|150377494|ref|YP_001314089.1| autoinducer-binding domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150032041|gb|ABR64156.1| Autoinducer-binding domain protein [Sinorhizobium medicae WSM419]
          Length = 320

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 65/222 (29%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   +    N      FA            +   +   ++Y  +  DI      +  D  
Sbjct: 107 IKSAVLSFANAHGFERFAY--------LQTQGDDVQTFNSYPEEWQDIYLGSRYSIIDPV 158

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +      +    W          S  +            +G+  PV   F     + F S
Sbjct: 159 ITEAKRRMNVFSWTVDDWPARGRSELRRFKDQAVAHGIRSGVTVPVEGSFGSKMMLTFAS 218

Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192
                    + +A  A   V+     L         S    L+ RE  CL  A  G    
Sbjct: 219 SERKADVSKLQDAQDAIQAVLVIHYRLKILAAVTIVSPKTMLSPREAMCLMWAMKGKNGP 278

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E A+  G+   TV  YL +A  KL A +    +A A   G +
Sbjct: 279 ETAKITGIKPRTVQHYLDNARRKLGAQSVPHLVAIARDHGLV 320


>gi|146338047|ref|YP_001203095.1| putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like [Bradyrhizobium sp. ORS278]
 gi|146190853|emb|CAL74858.1| putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like [Bradyrhizobium sp. ORS278]
          Length = 242

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 67/218 (30%), Gaps = 2/218 (0%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
           +  +   +  I    F  Y +       +  Q     + +  +  ++         D   
Sbjct: 24  ASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILANGWPREWFEMYAREQFHRCDPIP 83

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
            H  S L P  W  +  +   +      +          G   P+       G V    E
Sbjct: 84  RHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRLNEGFCVPIHYDD-AVGAVSIAGE 142

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAE 196
              LA +     H       +    L +  +    R L+  E   L  A  G T+ E A 
Sbjct: 143 HPNLAPDARGALHLISIFTHSRLRALARATAGNPGRRLSRIEAEVLSWAARGKTAWETAR 202

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LG+S   V  +L  A  KL   N+   +A A+  G I
Sbjct: 203 ILGVSERNVRWHLEEAQRKLATKNKTATVATALVNGEI 240


>gi|148256507|ref|YP_001241092.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146408680|gb|ABQ37186.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 242

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 12/232 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +++SL ELS  L   ++  +  +      N+       +     L  YD +         
Sbjct: 14  RTTSLSELSNVLSETRHEYELAHLVY---NARHLPRTEEPNPLLLLTYDAEWVQRYKTQD 70

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  + H  + LLP+ W ++  E+                +   G+  P+R    + 
Sbjct: 71  YFQIDPVIKHGLASLLPLDWSNL--ESGEADVRAFFREARSFGVGRNGMTIPIRGPHGER 128

Query: 130 GYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182
                TS       +     ++ +     Y      + L   R      R L+ RE   L
Sbjct: 129 ALFSLTSNLSAGQWQTTRLAMMRDFMIIAYFFHDQAVRLSGMRDLPGMGRPLSRRERETL 188

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           QLA  G+  ++IA  L +S   V  YL +A  KL+     Q IAKAI    I
Sbjct: 189 QLAARGFAPKQIAADLRVSTTAVRLYLQTARTKLECTTLTQGIAKAISLDLI 240


>gi|297489|emb|CAA68561.1| luxR [Aliivibrio fischeri]
          Length = 250

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 10/231 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           K+    +++  L  +   +        T+         +  I  L NY        +   
Sbjct: 17  KACRAYDINQCLSDMTKMVHCEY--YLTLAIIYPHSMVKSDISILDNYPKKWRQYYDDAN 74

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  + + NS   PI W  I E   +       ++         G +FP+    +  
Sbjct: 75  LIKYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGF 133

Query: 130 GYVIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           G + F         + +   H           ++ ++ ++    + +  +LT+RE  CL 
Sbjct: 134 GMLSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G +S +I++ LG S  TV  +L +A +KL+  NR Q+I+KAI  G I
Sbjct: 193 WACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243


>gi|289628275|ref|ZP_06461229.1| putative LuxR-family regulatory protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 262

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 11/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYGD 74
           +    L  +  ++    FA Y I+ +   P     L   +  +     D          D
Sbjct: 16  DWERHLRKVMRQL---GFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDCYCCDGLLDID 72

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVI 133
             L H    L+P+ W             +   +         G++ P+R         V 
Sbjct: 73  PILKHCRQELVPMFWAQQGRRARG--RTRHFWQRREEHGLCHGLSIPLRYERLRGTLSVA 130

Query: 134 FTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           F      E    A+            +++     ++  +    +LT RE  CL  A  G 
Sbjct: 131 FDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECLYWASAGK 190

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS EI+  L  S  TV+ +L +A  KL +V+R QA+  A   G +
Sbjct: 191 TSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235


>gi|192360157|ref|YP_001981723.1| putative two-component transcriptional regulator, LuxR family
           [Cellvibrio japonicus Ueda107]
 gi|190686322|gb|ACE84000.1| putative two-component transcriptional regulator, LuxR family
           [Cellvibrio japonicus Ueda107]
          Length = 238

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 4/226 (1%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           S ++Q L        + I      +  + +     +++     L NY  D  +       
Sbjct: 13  SKNIQSLFNLFEKYMSDIGFDR-VILGLMTDHPRLKKEAEHGFLKNYPADWVERYFDQKY 71

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
            + D         +    W  ++    + +              F G+   +R       
Sbjct: 72  VHIDPVRHKAYDAIGAYTWDELKASMQLSNKQIQMFNEAEDARLFNGVGVSMRGPGGAIA 131

Query: 131 YVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            V    + +   L  +++  A+    Q  T +  L +K+     +LT +E   L  +  G
Sbjct: 132 AVGAACSVKNGNLNKDILDAANLMSVQFYTCYWRLMEKKV-TLVHLTAKEQEILTWSAAG 190

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           YT  +IA KL +SVHTV+ ++ +   KL+A N   A+++A+    I
Sbjct: 191 YTKSQIAHKLCISVHTVDFHVRNCLAKLEAQNITHAVSRALNLSLI 236


>gi|182677912|ref|YP_001832058.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633795|gb|ACB94569.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 268

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 87/239 (36%), Gaps = 12/239 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
              L  + + S + L      IQ   + +N       S          I  L  Y  +  
Sbjct: 34  TQLLDLEANLSERTLEEFAVFIQKYYELKNIFYIC-PSLPGRTITDPYI--LGTYSQEWI 90

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +          D  +      LLPI W  +   +      +         +   G+  PV
Sbjct: 91  EHYRERNYVNLDPVINVGARSLLPIDWAKLPRSSP--KIQKFFGEATDFGVGRQGLTIPV 148

Query: 123 RLGFHKNGYV-IFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSS-AARNLT 175
           R   +    +   T++           E+I +     + +     E+  +        +T
Sbjct: 149 RGPTNGLWALFCMTTDDTQAEWQARHYELIRDMVHVAHFIQQRAFEMHHQDEGIDINTIT 208

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L  + +G T E+I+  + +S  TV A+L SA  KL A+NRI A+AKAIR G I
Sbjct: 209 KREIEALSWSAEGKTLEDISVLMRISQETVKAHLDSARYKLGALNRIHAVAKAIRAGLI 267


>gi|330870194|gb|EGH04903.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 280

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 11/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYGD 74
           +    L  +  ++    FA Y I+ +   P     L   +  +     D          D
Sbjct: 34  DWERHLRKVMRQL---GFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDCYCCDGLLDID 90

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVI 133
             L H    L+P+ W             +   +         G++ P+R         V 
Sbjct: 91  PILKHCRQELVPMFWAQQGRRARG--RTRHFWQRREEHGLCHGLSIPLRYERLRGTLSVA 148

Query: 134 FTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           F      E    A+            +++     ++  +    +LT RE  CL  A  G 
Sbjct: 149 FDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECLYWASAGK 208

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS EI+  L  S  TV+ +L +A  KL +V+R QA+  A   G +
Sbjct: 209 TSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 253


>gi|294142230|ref|YP_003558208.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328699|dbj|BAJ03430.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 250

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 70/217 (32%), Gaps = 11/217 (5%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNY-----DLDSGDIPNILIETYGDDFLF 78
           +QN ++    AL T+    D             +       + G+I       Y D  + 
Sbjct: 39  LQNLLEVDGVALITLMIRPDHSI-NIERVVSSGFGFEAKSAEWGNIYQKNKFQYIDPIVS 97

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTSE 137
              S      W S+     +  S    +     +    G +              I +  
Sbjct: 98  CSKSIRSSFNWTSVPSMMSLSESQLNFLEQAEEMGLKEGASIGSFSSRHIYKELNITSVS 157

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              L +E +                L    ++    LT+RE   L  + +G +S EI   
Sbjct: 158 GRSLNSEQLATLELINTVSAQAMTRL----TNPVEELTKREREILAWSSEGKSSWEIGMI 213

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++  TV  +L +   KL+  NR QAI  AIR G I
Sbjct: 214 CSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRQGLI 250


>gi|115265509|dbj|BAF32771.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv.
           actinidiae]
 gi|330965240|gb|EGH65500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 254

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 14/248 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +S+     + +S+L +      L+ + +      +    +  + D       +  L N  
Sbjct: 5   LSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTP 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113
            D   +         D       + + P +W          +T I    +  VR      
Sbjct: 65  ADWHALWCSQGYYQIDPVQHLAVARVSPFVWSYQPRAETVLQTFITDMHKPVVRYLHDSH 124

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKK-- 166
              G+  P+ +       +           L  A + + E     +        LF +  
Sbjct: 125 MTCGVTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKM 184

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS  A  LT RE  CL  + +G T+ EIA++L  SV T+  +L SA  KL A NR+QA+ 
Sbjct: 185 RSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQAVV 244

Query: 227 KAIRFGYI 234
           +A+ +  +
Sbjct: 245 RAVHYRLL 252


>gi|159184428|ref|NP_353732.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139741|gb|AAK86517.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 201

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 73/198 (36%), Gaps = 1/198 (0%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           ++ + +          + ++  +     +          +       +P           
Sbjct: 3   LDLSSELASELSQYTVITSWPAELLQRYDEEGMLQNSRVMAQLKKSTIPFSVSMDFLVNG 62

Query: 98  IESSGQL-SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156
            E       + L         + FPV     + G + F+    +L    + E       V
Sbjct: 63  EEHIANKTVIGLFERFEMVNSVWFPVHDVTMRRGAISFSGNKAVLPTTRLAELLYISCHV 122

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                E+ +        L+ERE  CL     G TS EIAE + LS HT+N YL  AT KL
Sbjct: 123 FARLSEIRRLDLRVPETLSEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKL 182

Query: 217 DAVNRIQAIAKAIRFGYI 234
           D VNR QA+AKA+R G I
Sbjct: 183 DTVNRTQAVAKALRVGLI 200


>gi|167035632|ref|YP_001670863.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862120|gb|ABZ00528.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1]
          Length = 235

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 66/222 (29%), Gaps = 10/222 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
                +  +  +        +N  +    +   +    NY  +  +          D   
Sbjct: 19  QKLFDIAVHLAQELGMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAA 78

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              +S   P++W         +                 G    +    H    +     
Sbjct: 79  HMSHSSTTPVLWTDDLYRDAPQ-----FREAACQHGLRHGWTQSLHDLQHNESQISVARP 133

Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSE 192
              +    + +        C+ +     E            ++ERE   L+ +  G T+ 
Sbjct: 134 AEKIDIVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPRMSERELEVLKWSAAGKTAA 193

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++A  L LS  TVN ++ S   K +A N+  AIA A   G+I
Sbjct: 194 DVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|148241069|ref|YP_001220570.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146411445|gb|ABQ39898.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 243

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 17/233 (7%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + + ++         + +  R FA +   +             + +Y             
Sbjct: 18  AHTEEDFRRVAERTAHALGFRWFAYFGHRANGPK--------LISSYPKSWTSHYFREGY 69

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  L    +     +W   +  +      +             G+   +    ++  
Sbjct: 70  DNIDPVLQEPRNTSRMFLWDGREARSAKSPKERRLFDDALSFKIRTGLTVRIPSSQNQFA 129

Query: 131 YVIFTSEFLML-------ANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSC 181
                ++   L        ++ ++E  G  Y        + +          LT+RE  C
Sbjct: 130 AFTLAADDRSLGLDRFIETSQDMLEMVGLTYHAHVSAARIGRTPPDGQQGSPLTQRERQC 189

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L    DG T ++IAE LG+S   V  +L +A   L A+    A+A A R G +
Sbjct: 190 LAWISDGKTMQDIAELLGVSPRGVKFHLDNARRNLAALTLPHAVALAFRQGLL 242


>gi|159185350|ref|NP_355660.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159140603|gb|AAK88445.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 245

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 71/236 (30%), Gaps = 13/236 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            ++ S   +      +        F  + ++  +             +      ++    
Sbjct: 12  SQAGSADRVRSEFAKLIREY---GFEYFLVSRRMTGELASAGQILAEHLPDGWLEVYRAK 68

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                D           P  W+   E     +      +     G      G AFPV   
Sbjct: 69  KYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGGYAFPVHGR 128

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------AARNLTERE 178
               G V        L +  +     A   V    L+L  +          +A  LT RE
Sbjct: 129 AGFIGAVFIGGPDRQLPSLHVELLDAATRAVFWRLLDLSGQAHGFSNAPDVSALELTRRE 188

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L  DG TS EI  +L +S HTV+ Y+     +  A NR   +A A R G +
Sbjct: 189 MEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRHGLL 244


>gi|94496793|ref|ZP_01303368.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58]
 gi|94423806|gb|EAT08832.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58]
          Length = 256

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 89/238 (37%), Gaps = 7/238 (2%)

Query: 1   MSENTLTG-KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDL 59
           ++++ L   +K +S +EL+  +  + + I  R+FAL   +        +    ++ +Y  
Sbjct: 11  LADDLLRALRKVASREELAALMTCLASEIGFRHFALIHHD---PLAGERPDRVDIRDYPA 67

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
              D      +   D  +          +W  + +        + S+    G     GI 
Sbjct: 68  AIVDRLFDQGQLRRDPVIRGCLFSDGAFLWSDLDKIITFTRQDRHSLEFGAGHGLNEGIT 127

Query: 120 FPVRLGFHKNGYVIFTS-EFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTE 176
            P  L     G   F       LA+  +  A               L       A  L  
Sbjct: 128 VPHVLLGECIGSCTFAGATDPQLASRYLGFAQITGIFAFQAARRMLLASPLIGPAPRLHP 187

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           R   C+ LAG G++++EIA +LGL+  TV+ YL  A    DA +R + +  A+  G I
Sbjct: 188 RPRDCVVLAGRGFSNKEIARELGLTPRTVDGYLTEARRLFDAHDRAELVVSAVLAGEI 245


>gi|197344631|gb|ACH69663.1| LuxR family transcriptional regulator [uncultured bacterium]
          Length = 238

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 63/187 (33%), Gaps = 9/187 (4%)

Query: 53  ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112
               Y      + N     Y D  + H  +   PI W     +    +S    +      
Sbjct: 55  ITSGYPEQYRHLYNDKGFIYRDPSVVHCQTRTDPIFWNESMYD----ASSYEIMEESQRF 110

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKR 167
               G + PVR        +    +      E+       +       V+   + +    
Sbjct: 111 GLGHGFSVPVRESDKVVSMISLARDQPFTKQELEYIVPTAKVLATVMHVVAQKIIVPSMI 170

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            S    L+ RE  CL+    G ++  IA+ L +S  TV  YL  A  KL    R+QA+A 
Sbjct: 171 ESRQPRLSPRELECLRWVAQGKSNTVIADILKISDDTVAFYLRGALRKLGVSTRMQAVAL 230

Query: 228 AIRFGYI 234
            + FG I
Sbjct: 231 CVTFGLI 237


>gi|209548400|ref|YP_002280317.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534156|gb|ACI54091.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 240

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 4/224 (1%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++  E+   +  +   +    F + T+ +          I  + N+  +  D  +     
Sbjct: 18  NTHYEVFKYMKGLTQDLGMTAFLIMTLPTVDFAEIGATKI--ITNWPAEMVDYYDAHNLM 75

Query: 72  YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
                +        P  +          E      + L        G  FPV       G
Sbjct: 76  VDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIELFNRYGMEKGAYFPVHDAAGGRG 135

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +  +        E + +       +     +L           T  E  CL+L   G  
Sbjct: 136 AMSISGSRNFSMIE-MAKLLFIATLIYDRLSQLTLNEKHKPIEFTRNELDCLRLTAGGRK 194

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             EIA+ L L+ + VN ++GSA  KL    R QA+  A+R   +
Sbjct: 195 GAEIAKLLDLTENAVNNHIGSAIKKLGCTTRTQAVVSALRLNIL 238


>gi|319781695|ref|YP_004141171.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167583|gb|ADV11121.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 256

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 5/226 (2%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + ++ +   R   I   + A  F L+ ++ + +    + + C   +Y   +      +  
Sbjct: 33  AVTIPDAVRRCRWIAVDMNASAFGLFFVSPSPERA--RLVPCFDSDYPGIAVAT-KFISG 89

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP--FAGIAFPVRLGFHK 128
             G++ + H      P  W         E  G  +       L    +GIAFPV     +
Sbjct: 90  ANGEEIVRHTRISTEPRWWTDDGVPATAELFGDFAWTERMAALVPGTSGIAFPVHADRGQ 149

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G V+F    + L  + + E H  C+ +      +    +   R +++RE  CL+L  +G
Sbjct: 150 CGLVVFLGSEMTLQQDALYEVHARCFSLFAAVARIRPGDAGRMRAISKRELECLKLTANG 209

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TSEEIA  L LSVHT N YL  +T KL+AVNR QA+AKA+R G I
Sbjct: 210 NTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|194365353|ref|YP_002027963.1| LuxR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348157|gb|ACF51280.1| transcriptional regulator, LuxR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 234

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 7/235 (2%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  +++ SL E+   L  +   +      ++   + L+   ++       ++  D
Sbjct: 4   LVQALLGLERADSLTEVGAILRSVAAPLGYDRVLVFATGTGLERDAQRVY-WIEGDWLGD 62

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             D        +      H      P  W     +       Q+  +  G  L   G+  
Sbjct: 63  GSDTDLA-RYLHACPVNRHVLDSDAPFFWSKR--QGARGERYQVVKQPRGDGL--HGLQV 117

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERET 179
           PV       G + F    +  +    +               L +  +      L+ RE 
Sbjct: 118 PVFGTTGLEGAISFAGAAVDASARARLLLEAVATAAFRTARRLAEAPAELPVGALSARER 177

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+    G    EIA  LGLS  TV  +L  A  +L      QA+  A R G I
Sbjct: 178 EVLRWVAAGRRQAEIAATLGLSARTVENHLRRARQRLGVATTAQAVRAASRRGEI 232


>gi|307300496|ref|ZP_07580276.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318361|ref|ZP_07597796.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306896043|gb|EFN26794.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904662|gb|EFN35246.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 321

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 4/231 (1%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            +      +  EL   +  + +R    +F +  +  A +    ++L   L N+  +    
Sbjct: 94  EIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERL--VLSNWPAELVQQ 151

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
            +        + +       LP+     + E     +     +RL          A  + 
Sbjct: 152 YDAGETFQTSELVERLRQTKLPVTGGPELMEPAGKGAGKAAFIRLPPHAGMGH-FAVLLH 210

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
             + +    + +      A       + A  Q+       F   S A   L+ RE  CL+
Sbjct: 211 TTYGEPFVAVLSGTRDEPAGAERATLYLALLQLFECLERTFDAGSGAREKLSSREVECLR 270

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A  G +S+EIA  LG+S +TV++Y  SAT KLDAVNR+QAIA+A+R   I
Sbjct: 271 WAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 321


>gi|148549711|ref|YP_001269813.1| autoinducer-binding domain-containing protein [Pseudomonas putida
           F1]
 gi|148513769|gb|ABQ80629.1| transcriptional regulator, LuxR family [Pseudomonas putida F1]
          Length = 235

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 10/222 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
                +  +  +  +     +N  +    +   +    NY  +  +          D   
Sbjct: 19  QKLFDIAVHLAQDLDMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAA 78

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              +S  +P++W     +   +                 G    +    H    +     
Sbjct: 79  NLSHSSTMPVLWTDDLYKEAPQ-----FRETACQHGLRHGWTQSLHDQQHNESQISVARP 133

Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSE 192
              +    + +        C+ +     E            ++ERE   L+ +  G T+ 
Sbjct: 134 NGHIDMLELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPKMSERELEVLKWSAAGKTAA 193

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++A  L LS  TVN ++ S   K +A N+  AIA A   G+I
Sbjct: 194 DVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|124268980|ref|YP_001022984.1| LuxR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261755|gb|ABM96749.1| putative LuxR-family transcriptional regulator [Methylibium
           petroleiphilum PM1]
          Length = 237

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 13/232 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++ +  E    +     R+    F   +  + +D P        + N      D      
Sbjct: 11  EARNRDEFRGEVVRFAKRL---GFETVSAITVVDHPVGDTEFVAIDNAPDAYKDAIEDPK 67

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  + H     +PIIW    + T + +        +       GI   + +   ++
Sbjct: 68  AGQLDPVMQHCKRQSVPIIW---DQSTYVSAGQGSMWEAQARFGFRTGICLALHMPEGRH 124

Query: 130 GYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCL 182
             +    +            ++ +            + +   ++       LT RE   L
Sbjct: 125 FVIGVDRDQALPKDRGEVTRLVADLQLFAVHAQDTAMRVLVPERLQLERPKLTPRELDSL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +   DG T+ E+   +G+S  T   ++ +A  KL   N+ QA+ KA+R G +
Sbjct: 185 RWTMDGKTAWEVGSIMGISERTAVLHINNAMHKLACTNKHQAVLKALRLGLL 236


>gi|148255499|ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1]
 gi|146407672|gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1]
          Length = 213

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 11/215 (5%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            +     FA  +     D    +     +  Y     +          D  +    +  L
Sbjct: 2   EQYGFPCFAYLSFAPRGD----EDDALAITTYPSAWVEQYRANRYDRIDPVIARSVATTL 57

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145
           P  W + Q +  + +  +  +          G+  P+     K   +   +     A E 
Sbjct: 58  PFAWSTDQFDA-LNNRQKWFLEEASEFEIRHGVTIPIHDRQGKVATLTLAACEARSAFEA 116

Query: 146 -----IIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLG 199
                  E H     +     ++    +S  R  LT+RE  CLQ A  G ++ + AE + 
Sbjct: 117 QISKYRHELHLIAIYLYARLRDVTPTPASPLRPCLTQRERICLQWAARGKSALDTAEIIN 176

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TV  +  +A  KL      QA+AK + +  I
Sbjct: 177 VSRRTVVFHTQNAKRKLGVATVQQAVAKGLAYDII 211


>gi|325277395|ref|ZP_08143015.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097468|gb|EGB95694.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 242

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 9/229 (3%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           L  +++++L  +   L     R+    F L+++ +  D     ++     ++  D   I 
Sbjct: 14  LAVERATTLAGVQDALRPFAMRLGYDRFVLFSVRAVAD-ALIDRVYWVEGDWWGDGQAID 72

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL-PFAGIAFPVRL 124
                        H      P  W         +  G+    +         G+  PV  
Sbjct: 73  -ARTYLTRCPVTRHVLEARAPFFWT-----KTCDEKGERYRVVRRPAGAGVHGLQLPVFG 126

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQ 183
                G +      +  + E  +               L +   +A A  L+ RE   L+
Sbjct: 127 PQGLEGAMSLGGARIDSSPEARLMLAMVATAAFHTARRLLQPPLAASATQLSAREREVLR 186

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
               G    +IA  LGLS  TV  +L +A  +L      QAI  A+  G
Sbjct: 187 WTAAGSRQADIAATLGLSERTVENHLRAARRRLGVATTAQAIKIALHNG 235


>gi|149184297|ref|ZP_01862615.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831617|gb|EDL50050.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 211

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 3/210 (1%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
           +R  A  F+ +           ++       + +D  D+ +       D           
Sbjct: 2   DRFGADKFSYHFTPV-FGSQVSRETQVVARGFSMDWLDLYDSADFRQCDPIPDEVMRAGH 60

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM-LANE 144
            I W+   +        +  +          G   P+    +++ Y  F     +    E
Sbjct: 61  TISWEEALDRAEHTPEVERFIAALREYGIANGFGVPLYGPDNRDAYAAFGFPAEVTPTEE 120

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            I+              +L         +L++RE   L+L   G +   IA+ L +S  T
Sbjct: 121 QIVALTMVARTAHDRVCQLVTIEEGEI-SLSQRELEVLRLIAHGKSKPVIAQLLEISADT 179

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  Y+     KL   +R+ A  KA++   I
Sbjct: 180 VGTYVKRLYAKLGVSDRVGATVKALKLKLI 209


>gi|103488004|ref|YP_617565.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978081|gb|ABF54232.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 276

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 73/226 (32%), Gaps = 6/226 (2%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +   ++L   L     R+   +FAL         P        +HNY      +      
Sbjct: 43  ADREEQLFAALTKAAGRMGFDHFALAFDRRGTGEPAS----ILVHNYPDAWAKVYVGFDL 98

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
           +  D         L    W+ +     +    +  + +        G   P  L    +G
Sbjct: 99  SGTDPIRRASERSLTGFEWRHVDRYIPLSRGDRQLLSVARDSGVGDGFTVPRHLPGEASG 158

Query: 131 YVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDG 188
              F       +  +++  A       I    EL        R  LTER+  C+  +  G
Sbjct: 159 TCSFAVRPHADIPADMLHAAEILGAIAIASARELIGSSPLRPRPILTERQRECVLWSARG 218

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+ EIA+ LG+S  TV  +L  A  +     R   I  A+  G I
Sbjct: 219 KTAGEIADILGISEETVVRHLKMARERYSVHCRSMLILCALFDGLI 264


>gi|229588916|ref|YP_002871035.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360782|emb|CAY47640.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 11/224 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +    L  I  RI    + L    S    P  +     +  Y  D             D 
Sbjct: 16  DWERHLRKILRRIGYERYLLSLGPSTTHDPFNR----IMTTYPSDWLKRYKDENFIQVDP 71

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH-KNGYVIF 134
            + H      P+ W   + +           +   G     G++ P+R      +  V  
Sbjct: 72  IIRHCRHHFAPLFWGRARLKARG--CTNRFWKEREGYGLLRGVSIPLRFNEMAGSLNVAQ 129

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYT 190
                    + +    G  + +I   LE  +K          +LT RE+  L+  G G T
Sbjct: 130 CVSDTDELADDLNGPLGMLFMLIPFLLEGSQKHLKTVGEPPSSLTLRESEVLKWTGVGKT 189

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + E++  LG S  T+N ++ +A+ KL + +R QA+  A+  G I
Sbjct: 190 TWEMSCILGCSERTINFHIANASRKLGSFSRRQAVGVALAQGLI 233


>gi|292487894|ref|YP_003530769.1| transcriptional activator protein expR [Erwinia amylovora CFBP1430]
 gi|292899116|ref|YP_003538485.1| LuxR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291198964|emb|CBJ46075.1| LuxR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291553316|emb|CBA20361.1| Transcriptional activator protein ExpR [Erwinia amylovora CFBP1430]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 13/231 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +K S +  ++  +      ++   ++L+        P  +       NY  D  D     
Sbjct: 18  EKGSGIDHITRLIEQQLRALELDFYSLF---IRHPVPFTRPKTFLYSNYPQDWLDHYWRE 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L   +S     IW     +    S+G            F G++  V      
Sbjct: 75  GFYQLDPVLEMCSSPGK--IW---LWDDKTISAGLCVFEHARNYGIFHGLSCSVMASNRS 129

Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQ 183
            G +  ++        L  E  ++        +   + +     +  + + +ERE   L+
Sbjct: 130 VGILSMSTANSQKLIKLTTETELKIQYVLELSMAALININDISMATTKLDFSERELEILK 189

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS EI+  L +S +TVN +      + +A N+ Q  + A   G I
Sbjct: 190 WTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|322835285|ref|YP_004215311.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170486|gb|ADW76184.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602]
          Length = 251

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 89/245 (36%), Gaps = 15/245 (6%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLD 60
           E+ ++ ++ +++     +L    +R+      +    +  +L+       +  + N   D
Sbjct: 7   ESAVSLRE-TTVDGAFDQLFAQTSRLGFDALIYDYTPVPRSLEGELITPSLLRMCNVPGD 65

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET-----VIESSGQLSVRLEGGLLPF 115
              +         D    +      P +W   + +       +    +            
Sbjct: 66  MQRLWLENGYYQVDPVQHYALESCAPFVWSYQRPDNTSLQNRLSDLNKPVTHYMCDNNMP 125

Query: 116 AGIAFPVRLGFHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
           +G   P+ L         G        L + ++V+ E              LF       
Sbjct: 126 SGATVPLHLPNGGFVTVTGIHTGAGHELDI-HDVLAELSLLALTFQECVFPLFDSSILTC 184

Query: 172 R--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           R   L++RE  CL  A +G T++EIA KL  S+ TV  +L +A  KL A NR+QA+ +A+
Sbjct: 185 RHVRLSKRERECLTWAAEGLTAKEIARKLNRSIATVTLHLNTAARKLGASNRVQAVVRAM 244

Query: 230 RFGYI 234
            +  +
Sbjct: 245 HYRLL 249


>gi|182679885|ref|YP_001834031.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635768|gb|ACB96542.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 255

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 3/229 (1%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  S   L    HL +    +  F  +T+       +R      L +Y  D  D     
Sbjct: 17  RRIDSADSLCALSHLTEEMCLSLGFPWFTLIRGKQLAKRDDRSILLTSYPQDWVDHVLKE 76

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D   F  +  +  + W  I +   + S    ++          G   P+RL   +
Sbjct: 77  KRHLDDPVHFAASRLVNGLSWNEIGQYVTLNSRQIETLESARRHGLNTGFTIPLRLDGFE 136

Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLA 185
           N        +  ++ +E  + A             L           +L+ R+  C+ L 
Sbjct: 137 NAMFSMAKRKANVITSEERLLACLVGSVTFARAHALVTADAGIFTPVHLSPRQVDCVALL 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             GY+  EIA +LG+S  TV  Y+  A        R Q    A+R GY+
Sbjct: 197 AKGYSDFEIARQLGISPETVREYITKARRSYGVKRRFQLAILAVRDGYL 245


>gi|222081950|ref|YP_002541315.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726629|gb|ACM29718.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 260

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 18/252 (7%)

Query: 1   MSENTLTGKKSSSLQE-----LSPRLHLIQNR-IKARNFALYTINSALDFPRRQQLICEL 54
           M +   T ++  +  +     +      +Q    +A  +    +   LD         +L
Sbjct: 1   MLDEIGTIRRKFTAHDTLDGRIDQAFEAMQQLGFEALVYDYTPVPFDLDGELMVPSFLKL 60

Query: 55  HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQLSVRLE 109
            N   D  +          D           P  W    E           + +   R  
Sbjct: 61  RNISDDMLEYWFDRGYFRIDPVQQVALRTSAPFFWNYNVEADTAINRYLGENTEPVARYL 120

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELF 164
                  G+  PV +       V         +F   A   I +     +        LF
Sbjct: 121 NERDMSTGVTVPVHMPRGDYATVTGIRFGANKDFERNALRYIADFGLLAHVFHETAYALF 180

Query: 165 K--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +RS     LTERE  CL+ + +G +++EI+  +  SV TV  +L SA  KL A NR 
Sbjct: 181 DSSERSVGKMRLTERERECLRHSAEGLSAKEISRIIDRSVPTVVMHLNSAAKKLGAKNRT 240

Query: 223 QAIAKAIRFGYI 234
           QA+ +A  +  +
Sbjct: 241 QAVVRATHYRLL 252


>gi|325294100|ref|YP_004279964.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325061953|gb|ADY65644.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 258

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 73/235 (31%), Gaps = 13/235 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++ +   +      +        F  + ++  +             +      ++     
Sbjct: 26  QAGNADRVRSEFVTLIREY---GFEYFLVSRRMTGELASTGQILAQHLPEGWIEVYRAKK 82

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
               D           P  W+   E     +      +     G      G AFPV    
Sbjct: 83  YNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRANVFFHDAGRYGLQGGYAFPVHGRA 142

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAARNLTERET 179
              G V    E   L +  +     A   V    L+L  +        + +A  LT RE 
Sbjct: 143 GFIGAVFLGGEDRQLPSLHVELLDAATRAVFWRLLDLSGQVHNLNNAPNVSALELTRREM 202

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L L  DG TS EI  +L +S HTV+ Y+     +  A NR   +A A R G +
Sbjct: 203 EVLTLMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRNGLL 257


>gi|37223239|gb|AAQ90220.1| LuxR [Aliivibrio fischeri]
 gi|37223242|gb|AAQ90222.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 11/212 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +++  L  +   I   +   Y           +  +  + NY        +       D 
Sbjct: 26  DINQCLSEMAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLKYDP 82

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + +  S   PI W  + E+  I+      +R         G +FP+    +  G + F 
Sbjct: 83  VVDYSKSHHSPINWN-VFEKKSIKKESPNVIREAQESGLITGFSFPIHTANNGFGMLSFA 141

Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                +  + +   H           ++ ++ ++      +   LT+RE  CL  A +G 
Sbjct: 142 HSDKDIYTDSLF-LHASTNVPLMLSSLVDNYQKINTTHKKSDSILTKREKECLAWASEGK 200

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           ++ +I++ LG S  TV  +L +  +KL+  NR
Sbjct: 201 STWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|114704741|ref|ZP_01437649.1| putative transcription regulator protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539526|gb|EAU42646.1| putative transcription regulator protein [Fulvimarina pelagi
           HTCC2506]
          Length = 226

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 77/220 (35%), Gaps = 2/220 (0%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            +L   L +  N       A   + S  +   + +    + N+                 
Sbjct: 8   ADLEAALAMAGNTYGFTYAAALALPSTDEQGLQTRY--LMGNWSHGFQRSYEAAELHRHK 65

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +   ++  +P  W       + +       RL        G+  PV       G + F
Sbjct: 66  VVVATLSTDPMPFEWDIDTLYGISDPKPSKGARLVAEAGWSEGVLLPVHGMTAMCGALSF 125

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                + +  VI E     +        +    +     LT RE  CL+LA  G TS EI
Sbjct: 126 AGPNALPSRTVIYEMQSFAFVFFGMLAAVRFDENRRNNPLTPRERDCLRLAMLGKTSSEI 185

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L LS +T++ YL +A  KLDA NR   +A A + GY+
Sbjct: 186 GIVLSLSEYTISQYLTAAQRKLDASNRTHTVAMAAQLGYL 225


>gi|70732607|ref|YP_262370.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens
           Pf-5]
 gi|68346906|gb|AAY94512.1| autoinducer-binding transcriptional regulator, LuxR family
           [Pseudomonas fluorescens Pf-5]
          Length = 252

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 71/237 (29%), Gaps = 16/237 (6%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILIE 70
           +SL E       + + +              D      +    + N   D  ++      
Sbjct: 16  NSLHERMTGTMTLASELGFDALVYDYSPVPFDQAGELIIPSAMVCNTPRDWLELWCDQGY 75

Query: 71  TYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
            + D           P IW             +                  G+  P+ L 
Sbjct: 76  YHIDPVQQVALDSSSPFIWSYKPEAETVLRQALGQQHAPVSSYLHHHQMAHGMTVPIHLP 135

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTER 177
                    T      A   + +              L +                LT R
Sbjct: 136 RGGFA--SLTGLRSGNATVALQDLQQVQGHFTLLAHALQEHLYPQLSKCVRSYPVDLTRR 193

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E  CL+ A +G TS EIAE+L  S  T+N +L SA  KL A NR+QA+ +A+ +  +
Sbjct: 194 ERECLKWAAEGMTSGEIAERLQRSQATINLHLTSAMHKLGARNRVQAVVRAVHYRLL 250


>gi|170736657|ref|YP_001777917.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818845|gb|ACA93427.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 321

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 69/224 (30%), Gaps = 6/224 (2%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILIETY 72
           L  L      +   +    FA+  ++       R   +  L   Y               
Sbjct: 99  LSSLLKLFGDVSASLGFPRFAISRVSRRHAGNGRAMSVETLCARYPDHWVAHYAQRDYGP 158

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D       +   P  W  I     +    Q  +         +G++ P+R        V
Sbjct: 159 VDPVHRMAFARATPYRWADI---RGLNRIEQRVLGEARDAGLTSGVSIPLREANGDILLV 215

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYT 190
              S    +  EV +        +    L   +   R   A  L+ R+  CL     G +
Sbjct: 216 NLASPSPEIKTEVHMRLASLIGALFHQELHRLMKPHRPEPALELSPRQQECLAWVARGKS 275

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  IA  +G+S HTV+ ++  A   L   +R  A   A+  G I
Sbjct: 276 SWAIAAIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 319


>gi|149184172|ref|ZP_01862490.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831492|gb|EDL49925.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 217

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 61/219 (27%), Gaps = 7/219 (3%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              L           FA    +         ++  +   +     +          D F 
Sbjct: 2   FEILRRYFAEFGFEAFAYMVPSKTEPG----RIEMDAFGFPDAWAETYRSAEMDTIDPFP 57

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS- 136
            +      P+    I  +   +                 G+  P        G       
Sbjct: 58  RYVARSGRPLRLTEISAQAQSKEQKAFL-EQAREHGITDGLIIPTFGIRQNLGVFAIGQV 116

Query: 137 -EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            +  +L    +           T    L  +      NL+ RET  L     G T+ EIA
Sbjct: 117 KDLKVLERASVFALQAVAQAAHTQMEMLASRADGLRTNLSNRETEILHWIALGKTNSEIA 176

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LG+   TV  Y+     KLD  +R  A  KAIR+G I
Sbjct: 177 TILGIGGPTVATYIKRVFDKLDVKDRSSAAVKAIRWGII 215


>gi|271501434|ref|YP_003334459.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344989|gb|ACZ77754.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586]
          Length = 250

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 77/236 (32%), Gaps = 12/236 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++ L+E    L      +      +    +  +L+       + E+ N   D   +    
Sbjct: 13  ATRLEEAFAGLFARTQALGFDAVIYDYTPVPRSLEGALITPSLLEMRNVPDDMRRLWCER 72

Query: 69  IETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
                D           P +W             ++   Q             G   P+ 
Sbjct: 73  GYYQVDPVQHFALESCAPFVWSYQRPDRSALHGRLDEHAQEVTHYMRDNNMPCGATVPLH 132

Query: 124 LGFHKNGYVIFTSEFLMLANE---VIIEAHGACYQVITDFLELFKKRSSAAR--NLTERE 178
           L       +           +    + +     ++       LF       R   L+ RE
Sbjct: 133 LPNGGFVTLTGIVTDQREERDISETLAQLTFLAHRFQESAFPLFDASMLTCRHVKLSNRE 192

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             CL  + +G T++EIA KL  SV TV  +L +A  KL A NR+QA+ +A+ +  +
Sbjct: 193 RECLAWSAEGLTAKEIARKLHRSVATVTLHLNTAAKKLGATNRVQAVVRALHYRLL 248


>gi|58533128|gb|AAW78919.1| ExpR [Erwinia amylovora]
          Length = 240

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 13/231 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +K S    ++  +      ++   ++L+        P  +       NY  D  D     
Sbjct: 18  EKGSGTDHITRLIEQQLRELELDFYSLF---IRHPVPFTRPKTFLYSNYPQDWLDHYWRE 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L   +S     IW     +    S+G            F G++  V      
Sbjct: 75  GFYQLDPVLEMCSSPGK--IW---LWDDKTISAGLCVFEHARNYGIFHGLSCSVMASNRS 129

Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQ 183
            G +  ++        L  E  ++        +   + +     +  + + +ERE   L+
Sbjct: 130 VGILSMSTANSQKLIKLTTETELKIQYVLELSMAALININDISMATTKLDFSERELEILK 189

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G TS EI+  L +S +TVN +      + +A N+ Q  + A   G I
Sbjct: 190 WTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAVGLI 240


>gi|312172015|emb|CBX80272.1| Transcriptional activator protein ExpR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 240

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 15/232 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +K S +  ++  +      ++   ++L+        P  +       NY  D  D     
Sbjct: 18  EKGSGIDHITRLIEQQLRELELDFYSLF---IRHPVPFTRPKTFLYSNYPQDWLDHYWRE 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L   +S     IW     +    S+G            F G++  V      
Sbjct: 75  GFYQLDPVLEMCSSPGK--IW---LWDDKTISAGLCVFEHARNYGIFHGLSCSVMASNRS 129

Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARNL--TERETSCL 182
            G +  ++        L  E  ++        +   + +    S A   L  +ERE   L
Sbjct: 130 VGILSMSTANSQKLIKLTTETELKIQYVLELSMAALININ-DISMATTKLDSSERELEIL 188

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +   +G TS EI+  L +S +TVN +      + +A N+ Q  + A   G I
Sbjct: 189 KWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|37223211|gb|AAQ90202.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 79/212 (37%), Gaps = 11/212 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +++  L  +   I   +   Y           +  +  + NY        +       D 
Sbjct: 26  DINQCLSEMAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDP 82

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + +  S   PI W  + E+  I+      ++         G +FP+    +  G + F 
Sbjct: 83  VVDYSKSHHSPINWN-VFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFA 141

Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                +  + +   H           ++ ++ ++   R  +   LT+RE  CL  A +G 
Sbjct: 142 HSDKDIYTDSLF-LHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGK 200

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           ++ +I++ LG S  TV  +L +  +KL+  NR
Sbjct: 201 STWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|18250686|emb|CAD20930.1| RaiR protein [Rhizobium leguminosarum]
          Length = 265

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 8/195 (4%)

Query: 46  RRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS 105
                   +  Y  +             D  +     G LP+ W + + ++    +    
Sbjct: 73  ATASNPLLMLTYPPEWVKQYLERDYFSIDPVVRLGRRGFLPVEWSASKWDSGQ--AYGFF 130

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDF 160
                  +   G+  PVR    +      TS            + + +     + +    
Sbjct: 131 KEAMAFGVGRQGVTLPVRGPHGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRA 190

Query: 161 LELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           + L   ++ +    L+ RE  CL++  +G  +++I  +L +SV  V  YL SA  KL   
Sbjct: 191 MVLSGMRKITDFPQLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVA 250

Query: 220 NRIQAIAKAIRFGYI 234
              +A+AKA     I
Sbjct: 251 TTSEAVAKATALELI 265


>gi|325168564|ref|YP_004280354.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064287|gb|ADY67976.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 240

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 7/232 (3%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
           + L    + + Q +   +  +        F L++ ++A + P  +++     ++  + GD
Sbjct: 13  SVLAIDAAETFQTIQTEVRSLVAPFGYDRFVLFSASAAREEPI-ERIYWIEGDWFGN-GD 70

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
                          H      P  W     E       ++     G  +   G+  PV 
Sbjct: 71  PVTEETYIRRCAITRHILGAREPFFWTKTFREN--GELYRVVNLPRGPGI--HGLQVPVF 126

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCL 182
                 G +      +  +                   +L +   ++A   L++RE   L
Sbjct: 127 GPSGLEGAMSLGGTQINASPTTKWILTLLAVAAFYSARKLIEAPVASAIAVLSDREREVL 186

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                G    EIA  LGLS  T+  +L     +L      QAI  AIR G I
Sbjct: 187 TWTAAGRRQFEIAATLGLSERTIENHLRRIRHRLGVSTTAQAIRIAIRNGEI 238


>gi|37223214|gb|AAQ90204.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 11/212 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +++  L  +   I   +   Y           +  I  + NY        +       D 
Sbjct: 26  DINQCLSEMAKII---HCDYYLFAIIYPHSIIRPDISIIDNYPEKWRKYYDEAGLLEYDP 82

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + +  S   PI W  + E+  I+      ++         G +FP+    +  G + F 
Sbjct: 83  VVNYSKSHHSPINWN-VFEKKSIKKESPNVIKEAQASGLITGFSFPIHTANNGFGMLSFA 141

Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                +  + +   H           ++  + ++      +   LT+RET CL  A +G 
Sbjct: 142 HSDKDIYTDSLF-LHANTNVPLMLPSLVDSYQKINTTHKKSDSILTKRETECLAWASEGK 200

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           ++ +I++ LG S  TV  +L +  +KL+  NR
Sbjct: 201 STWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|330807408|ref|YP_004351870.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375516|gb|AEA66866.1| Putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 253

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
            SL E       +   +      +    +    D       + +L N   D   +     
Sbjct: 16  RSLDEQMDNTLGMVQALGFEALVYDYSPVPLDHDGALITPTVLKLRNTPRDWHSLWCEEG 75

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEET-----VIESSGQLSVRLEGGLLPFAGIAFPVRL 124
               D       + + P +W    E        I  S    V          G+  P+ L
Sbjct: 76  YYQIDPVQHLAINAISPFVWSYRPEADTVLQPFIGQSHAPVVSYLQDSRMTCGVTVPMHL 135

Query: 125 GFHKNGYVIFTSEFLMLA-----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178
                  +         +      + + +     + +      L  K + A    LT+RE
Sbjct: 136 PKGGFATLTGLRADTKGSTLQDVRQTLGDFSLISHALQEAAFPLLGKEARACPVRLTKRE 195

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             CL+LA +G T+ +IA +L  S+ T+  +L SA  KL A NR+QA+ +A+ +  +
Sbjct: 196 RECLRLAAEGLTAADIARQLNRSLATITLHLTSAMHKLGARNRVQAVVRAVHYRLL 251


>gi|206562110|ref|YP_002232873.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
 gi|198038150|emb|CAR54100.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
          Length = 262

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 70/224 (31%), Gaps = 6/224 (2%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILIETY 72
           L  L      +   +    FA+  ++       R   +  L   Y               
Sbjct: 40  LSSLLKLFGDVSASLGFPRFAISRVSRRHTGNGRAMAVETLCARYPDHWVAHYAQRDYGP 99

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D       +   P  W  I     +    Q  +         +G++ P+R        V
Sbjct: 100 VDPVHRMAFARATPYRWADI---RGLNRIEQRVLGEARDAGLTSGVSIPLRETNGDILLV 156

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYT 190
              S    +  EV +    +   +    L   +   R   A  L+ R+  CL     G +
Sbjct: 157 NLASPSPEIKTEVHMRLASSIGALFHQELHRLMKPHRPEPALELSPRQQECLAWVARGKS 216

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  IA  +G+S HTV+ ++  A   L   +R  A   A+  G I
Sbjct: 217 SWAIASIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 260


>gi|222066054|emb|CAX21482.1| ppoR luxR family protein [Pseudomonas putida]
          Length = 235

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 10/214 (4%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
           + ++        +N  +    +   +    NY  +  +          D      +    
Sbjct: 27  HLVQDLGMEHLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAARLSHGQTT 86

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145
           P++W         +                 G    +    H    V        +A   
Sbjct: 87  PVLWTDELYCEAPQ-----FREAACQHGLRHGWTQSLHDLQHNESQVSVARPAGQIAINE 141

Query: 146 IIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           + E        C+ + +   E            ++ERE   L+ +  G T+ ++A  L L
Sbjct: 142 LYEKAASVQWLCHTLHSVLCEHHLDALCPPQPKMSERELEVLRWSAAGKTAADVASILSL 201

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TVN ++ S   K +A N+  AIA A   G+I
Sbjct: 202 SQSTVNFHIRSVITKTNASNKAGAIAIAALRGWI 235


>gi|86358518|ref|YP_470410.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
 gi|86282620|gb|ABC91683.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
          Length = 260

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +   +                Y         + 
Sbjct: 34  EQIKAATNVDAAIRILQAEYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 90

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 91  SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 147

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +         ++           + +    +      +     L+ RE  CL 
Sbjct: 148 RALLSLNARIPADEWSELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPTLSPREIECLH 207

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 208 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258


>gi|37223202|gb|AAQ90196.1| LuxR [Vibrio fischeri ES114]
          Length = 230

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 11/212 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +++  L  I   I   +   Y           +  +  + NY        +       D 
Sbjct: 24  DINQCLSEIAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDP 80

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + +  S   PI W  + E+  I+      ++         G +FP+    +  G + F 
Sbjct: 81  VVDYSKSHHSPINWN-VFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFA 139

Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                +  + +   H           ++ ++ ++   R  +   LT+RE  CL  A +G 
Sbjct: 140 HSDKDIYTDSLF-LHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGK 198

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           ++ +I++ LG S  TV  +L +  +KL+  NR
Sbjct: 199 STWDISKILGCSERTVTFHLTNTQMKLNTTNR 230


>gi|90423532|ref|YP_531902.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105546|gb|ABD87583.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB18]
          Length = 242

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 77/233 (33%), Gaps = 11/233 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            + +++  +L   L  I    +  +   +  ++      R  LI     Y  +  +    
Sbjct: 13  IRVAATADDLHHVLRHICEAYQLAHAVFHATDTPAVRAERPLLIL---TYPAEWVENYTR 69

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  +     G L + W +I ++T   +        +   +   G+   VR    
Sbjct: 70  RDYFKIDPVVAIGRVGFLSLDWSTIDQKTASSAK--FFREADEFGVGRHGLTTTVRGPSG 127

Query: 128 KNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSC 181
           +      TS              I E            +     R       L++RE  C
Sbjct: 128 ERSLFTVTSNANAAQWTRQRDACIHEFQIIANHFHQRAMISTGLRGGDGPLPLSKREKQC 187

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++L   G+  ++IA  L LS   +  YL SA  KL A    QAIA A+    I
Sbjct: 188 IELLAKGFLPKQIAALLDLSESAIRLYLCSARRKLQASTTSQAIAIALSLELI 240


>gi|13990973|dbj|BAB47256.1| LuxR family quorum-sensing transcription factor [Agrobacterium
           tumefaciens]
          Length = 269

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   L    +      FA                I   ++Y  +   +      +  D  
Sbjct: 56  IKSALKTFAHACGFERFAY--------LQTEGSEIRTFNSYPEEWQGVYLESHYSRIDPV 107

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           ++   + +    W + +  +  +S  +            +G+  PV   F     + F S
Sbjct: 108 VWEAKTRMEIFPWTADEWPSRGKSELRQFRDQAINHGIRSGVTIPVEGSFGSTMMLTFAS 167

Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192
                    + +   A   V+     L            R L+ RE  CL+ A  G T+ 
Sbjct: 168 SAPAADVSKLQDGQKAVRAVLAIHYRLKMLAATTIVPPKRLLSPREAMCLKWAAKGKTAP 227

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E A   G++  TV  YL  A  KL+A      +A A   G +
Sbjct: 228 ETAILTGINPRTVQHYLDKAREKLEAATVPHLVAIAKDHGLL 269


>gi|307130193|ref|YP_003882209.1| transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937]
 gi|306527722|gb|ADM97652.1| Transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937]
          Length = 326

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 78/236 (33%), Gaps = 15/236 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFA-----LYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
                P    + + ++   F         +  +L+       +    N   D   +    
Sbjct: 91  AAAFEPAFEQLYDEVRRLGFDALIYDYTPVPRSLEGELITPSLLRTRNVPDDMVSLWCQS 150

Query: 69  IETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
                D    H      P  W      +     V+    +             G+  P+ 
Sbjct: 151 GYYQVDPVQIHALDSCAPFTWSYCRPENTSLRRVLNEQHRPVSHYMQNHNMRCGVTVPLH 210

Query: 124 LGFHKNGYVIFTSEFLMLANE---VIIEAHGACYQVITDFLELFKKR--SSAARNLTERE 178
           L       V      L   NE   V+       +        LF +        +L+ RE
Sbjct: 211 LPKGGFVTVTAIHTGLDTDNEIETVLARIGLLAHTFQEHVFPLFDEAWYHCRHVHLSPRE 270

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             CL  + +G T++EIA KL  S+ TVN +L +A  KL A NR+QA+ +A+ +  +
Sbjct: 271 QECLAWSAEGLTAKEIARKLHRSLATVNLHLNNAARKLGASNRVQAVVRAMHYRLL 326


>gi|71492988|gb|AAZ32754.1| MrtR [Mesorhizobium tianshanense]
          Length = 272

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +    A     +         Y         + 
Sbjct: 46  EQIKAAANVDAAIRILQAEYGLDFVTYH---LAQTIAAKIDSPFVRTTYPDAWVSRYLLN 102

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 103 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 159

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +         ++           + +    +      +     L+ RE  CL 
Sbjct: 160 RALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 219

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 220 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 270


>gi|167736311|dbj|BAG07412.1| LuxR-like protein [Gluconacetobacter polyoxogenes]
          Length = 236

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 9/229 (3%)

Query: 7   TGKKSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
             + +++  +L    L  + +        ++     L+     +       Y  +  +  
Sbjct: 14  DLENAATKHDLLSIYLDAVLSVGN-----VHVTIVELNRIEDPKENFIHVGYPTEWVNFY 68

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   D  +        P  W  I+     E      +R         G+  PV   
Sbjct: 69  IENNYIVSDPIIKKSRFMSHPYFWHEIRNINKSEKK---IIRDVSEFGIKKGLTIPVHTH 125

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                 + F      +  E+ +         I  + +L +    +   LT RE  CL+  
Sbjct: 126 DRLIYAICFAFTDKNVDQEIELYLRALSNFFIAGYKKLDEPTDMSPPILTPREKECLRWT 185

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +S E    +G+S  TVN ++ +A +KL   NRI  + +AI  G I
Sbjct: 186 AKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234


>gi|260466633|ref|ZP_05812821.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029639|gb|EEW30927.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 256

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 5/226 (2%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + ++ +   R   I   I A  F L+ ++ + +    + + C   +Y   +      +  
Sbjct: 33  AVTIPDAVRRCRWISVDINASAFGLFFVSPSPERA--RLVPCFDSDYPGVAVAT-KFISA 89

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV--RLEGGLLPFAGIAFPVRLGFHK 128
             G++ + H  +   P  W       + E  G+L+   ++       +GIA PV     +
Sbjct: 90  ANGEEIVRHTRNSTEPRWWADDGVAAMAEMFGKLAWTEQMAPLAPGTSGIALPVHADRGQ 149

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G V+F    + L  + + E H  C+ +      +    +   R +++RE  CL+L  +G
Sbjct: 150 CGLVVFLGSEIALPQDTLYEIHARCFSLFAAVARILPSDAGRTRAISKRELECLKLTANG 209

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TSEEIA  L LSVHT N YL  +T KL+AVNR QA+AKA+R G I
Sbjct: 210 NTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|241205631|ref|YP_002976727.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859521|gb|ACS57188.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 241

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +    A     +         Y         + 
Sbjct: 15  EQIKAAANVDAAIRILQTEYGLDFVTYH---LAQTIAAKIDSPFVRTTYPDAWVSRYLLN 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 72  SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +         ++           + +    +      +    +L+ RE  CL 
Sbjct: 129 RALLSLNARIPAEEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPSLSPREIECLH 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|37223223|gb|AAQ90210.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 11/216 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +G +S +I++ LG S  TV  +L +A +KL+  NR
Sbjct: 197 CEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|190404427|ref|YP_001961058.1| rcorf83 [Agrobacterium rhizogenes]
 gi|158322223|gb|ABW33640.1| rcorf83 [Agrobacterium rhizogenes]
          Length = 224

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 70/216 (32%), Gaps = 9/216 (4%)

Query: 23  LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82
            +++ + +  F  +          R       ++Y     DI      +  D  +     
Sbjct: 14  ALKSFVNSHGFERFAYLQTEGLEIR-----TFNSYPEGWQDIYLGGQYSRIDPVITEAKR 68

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142
            +    W +        S  +            +G+  PV   F     + F S    + 
Sbjct: 69  RMEMFYWTADDWPARGTSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMMLTFASSEKKVE 128

Query: 143 NEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
              +++A  A   V+     L         +  R L+ RE  CL  A  G ++ E A   
Sbjct: 129 KAKLLDAQKAVRTVLAIHYRLKIIASTTIIAPKRLLSPREAMCLMWAAKGKSAPETAMLT 188

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G++  TV  YL  A  KLDA      +A A   G +
Sbjct: 189 GINARTVQHYLDKAREKLDAATVPHLVAIAKDHGLV 224


>gi|218679157|ref|ZP_03527054.1| LuxR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 265

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 78/233 (33%), Gaps = 14/233 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +    +  I    +A  +    +   LD       + +L N   D  D          
Sbjct: 22  IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYWFNHGYFRI 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P  W    +   +             R         G+  PV +    
Sbjct: 80  DPVQQVALRSTAPFFWNYDTDADTLIKRFMSDDTAPVARYLNERDMSTGVTVPVHMPRGD 139

Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSC 181
              V           E      I + +   +        LF K + +     LTERE  C
Sbjct: 140 YATVTGIRFGRNDDFERYALRYIADFNLLAHVFHETAYSLFDKTAKSVGTVRLTEREREC 199

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+ + +GY+++EI+  +G SV TV  +L +A  KL A NR QA+ +A  +  +
Sbjct: 200 LRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 252


>gi|148553102|ref|YP_001260684.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498292|gb|ABQ66546.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1]
          Length = 254

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 72/229 (31%), Gaps = 6/229 (2%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S  +LS  +     +   R FAL       D  + +     L NY     D     
Sbjct: 23  EAAESSAQLSEVIAGAIQQFGFRWFALV---DDGDLYKHRSGCMMLTNYPSSWVDEVISA 79

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D            + W  I +      +    +          G   P R+   +
Sbjct: 80  RLYRDDPVHAASIRSPTGLCWDRIPDVIAPTRAQLSVLERGRAHGLTTGYTVPFRIPGER 139

Query: 129 NGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLA 185
             +                I A             L K R+  A    LT R+  CL+L 
Sbjct: 140 GAFFSIARPKDRSFTYSEAISAQLLGGIAFEAGRALVKGRAVKAHGAPLTPRQIDCLRLI 199

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T  E+ + LGLS  T++ Y+ +A  +     R Q +  A R GY+
Sbjct: 200 AAGKTEWEMGKILGLSPSTIHEYVEAARRRYGVKTRSQLVLAAARDGYV 248


>gi|149186879|ref|ZP_01865189.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148829546|gb|EDL47987.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 226

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 6/209 (2%)

Query: 28  IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI 87
           +  + FA    +          ++ +   Y     +          D F  H       +
Sbjct: 20  LGFQGFAYMVPSRDSPL----TMVYKSRGYPEKFIETYQREKLYLIDPFPAHVTRHKSTL 75

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG--YVIFTSEFLMLANEV 145
               I ++  +  +    +     +    G+  P      +     +   ++F ++ N+ 
Sbjct: 76  RISEIAQQAKLSRAETDYIDRMKKMGITDGLIIPTFGMDLRIVKFVLGQVTDFSVIENDN 135

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           + E             EL ++     R L  RE   L     G T+ EIA  LG++  TV
Sbjct: 136 LFEFTATLQMAHRRLDELARQDEPIRRRLPRREVEILHWIAKGKTNAEIAAILGVAAPTV 195

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++     KLD  +R     K  R+G I
Sbjct: 196 ATHIARMFQKLDVNDRAALAVKGFRYGII 224


>gi|18699286|gb|AAL78509.1|AF456804_1 probable transcriptional activator TraR [Sinorhizobium meliloti]
 gi|38374154|gb|AAR19282.1| TraR [Sinorhizobium meliloti]
          Length = 234

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 67/222 (30%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   L    +      FA           +    +   ++Y      I      +  D  
Sbjct: 21  IKSALRNFAHACGYDRFAY--------LQKEAFQVKTFNSYPGSWEGIYLGSDYSSIDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +           W +        S  +             G+  PV   +     + F S
Sbjct: 73  VTEAKRRGDVFFWTADDWPARGSSPLRRFRDEAIDHGIRCGVTMPVEGSYGSAMMLTFAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192
               +     ++   A   V+T    L     K   +  + L+ RE  CL  A  G T+ 
Sbjct: 133 PERNIDISGALDPKKAIQMVMTVHYRLKMIAAKTAVNPKQMLSPREMLCLVWATRGKTAP 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E A   G++  TV  YL  A  KL A +  Q +A A   G +
Sbjct: 193 ETAMLTGINPRTVQHYLDKARAKLGAESVPQLVAIAKDRGLV 234


>gi|37223217|gb|AAQ90206.1| LuxR [Aliivibrio fischeri]
          Length = 233

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 81/212 (38%), Gaps = 11/212 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +++  L  +   +   +   Y +         +  I  L NY     +  +       D 
Sbjct: 26  DINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWREYYDDANLIKYDP 82

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + + NS   PI W  I E   +       ++         G +FP+    +  G + F 
Sbjct: 83  IVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGMLSFA 141

Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                   + +   H           ++ ++ ++    + +  +LT+RE  CL  A +G 
Sbjct: 142 HSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEGK 200

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           +S +I++ LG S  TV  +L +A +KL+  NR
Sbjct: 201 SSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|163745782|ref|ZP_02153141.1| transcription regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380527|gb|EDQ04937.1| transcription regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 253

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 4/208 (1%)

Query: 29  KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88
                + +  ++       +                   +               +LP+ 
Sbjct: 40  GIDLVSYHGDSTGAPAILYRYEATGAET--PRWHSRFLDVETLRESPVEAIARQQVLPVY 97

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEVI 146
           W ++ +E  +  + +  +    G  P  GI+  V      +  V   F ++   L++  +
Sbjct: 98  WSAVSKEARLTRAERAYMDRLLGRYPNDGISLKVHGPGGDSAVVGLGFAAKQARLSSIAL 157

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
            +   A       +  L + +S     L+ RE   L+    G ++  IAE LG+S HTV+
Sbjct: 158 YKLLCAAQIAHLRYCALAESQSPRDFGLSPREVEVLEWIATGKSNGVIAEILGISPHTVD 217

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +     KLD  +R  A  + +  G +
Sbjct: 218 TIVRRIFAKLDVNDRTTAAIRGLGAGLL 245


>gi|10954765|ref|NP_066700.1| hypothetical protein pRi1724_p120 [Agrobacterium rhizogenes]
 gi|10567429|dbj|BAB16238.1| riorf119 [Agrobacterium rhizogenes]
          Length = 224

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 68/222 (30%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   L    N      FA                I   ++Y  +  DI      +  D  
Sbjct: 11  IKSALKSFANSHGFERFAY--------LQTEALEIRTFNSYPEEWQDIYLGSHYSRIDPV 62

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +      +    W +        S  +            +G+  PV   F     + F S
Sbjct: 63  ITEAKRRMETFSWTADDWPARGSSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMMLTFAS 122

Query: 137 EFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSE 192
                 N  +++   A   V+     L         +  R L+ RE  CL  A  G ++ 
Sbjct: 123 SEKKAENGKVLDGQKATRAVLAIHYRLKIIAATTIVAPKRLLSPREAMCLMWAAKGKSAP 182

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E A   G++  TV  YL  A  KLDA      +A A   G +
Sbjct: 183 ETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAKDHGLV 224


>gi|197103145|ref|YP_002128523.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196480421|gb|ACG79948.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 252

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 69/228 (30%), Gaps = 10/228 (4%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIP 65
             ++  S+ EL          +    F    +   +  P R++ +               
Sbjct: 18  DAQQVESIPELEAVFAKTLEPLGVDVF----VGVQIADPLRERHVEVTFGRTHAAWQAHY 73

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-ESSGQLSVRLEGGLLPFAGIAFPVRL 124
                   D  +        P+ W  +       +      +          G+  P+  
Sbjct: 74  EAQGHAARDPIVREMLRSTEPLFWSDLPARRGALKPDEARVMEEARSFGLNEGLMTPLHH 133

Query: 125 GFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERETS 180
                  V+   E L     +     H        +     +           L+ R+  
Sbjct: 134 VDGSVSAVLMMGERLASDAPDTRAALHLLSIYYGSLARKLRQRNDGGEPQKAKLSARQIE 193

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           CL+ A +G +S  I + L LS  TV+ +L SA  KL    R+QA+A+A
Sbjct: 194 CLRWAREGKSSYVIGQILSLSARTVDEHLASACRKLGVHTRMQAVAQA 241


>gi|229526554|ref|ZP_04415958.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229336712|gb|EEO01730.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
          Length = 250

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             ++S S   +   +    +         ++ +S LD    +++     ++  D G+  +
Sbjct: 23  QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 80

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                       H      P  W    +   +       V    G     G+  P+    
Sbjct: 81  AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 136

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185
              G V    + +  +     E              L +      +  L++RE   L L 
Sbjct: 137 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G    +IA  LG+S  T+  +L +A +KL      + I  AI+ G
Sbjct: 197 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243


>gi|116253119|ref|YP_768957.1| AHL-dependent transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115257767|emb|CAK08865.1| putative AHL-dependent transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 241

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +    A     +         Y         + 
Sbjct: 15  EQIKAAANVDAAIRILQAEYGLDFVTYH---LAQTIAAKIDSPFVRTTYPDAWVSRYLLN 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 72  SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +         ++           + +    +      +    +L+ RE  CL 
Sbjct: 129 RALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPSLSPREIECLH 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|217976294|ref|YP_002360441.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
 gi|217501670|gb|ACK49079.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
          Length = 244

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 18/240 (7%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  +   S + L   +  I++     N A    +                 Y  +  + 
Sbjct: 12  LLQLETDLSDETLDGFIEYIRHHYGLANIAYLCPSFRGR---SVADPFMALTYREEWVEH 68

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D         +LP+ W  +          ++        +   G+  PVR 
Sbjct: 69  YKDEGYGLIDPVHNIGARSVLPLDWARLPRAEK--KVQRMFGEAADAGVGRQGLTIPVRG 126

Query: 125 GFHKNGYVI----------FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
             +    +           +      L  +++  AH    +      +  +   +A    
Sbjct: 127 PTNGLWALFSVTSDEADTEWARRRFELTKDMVHIAHYVHQRAYKLHAKEDEIDLNAI--- 183

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L+ + +G +  +I+  + +SV TV A+L SA  KL A+NR+ A+ KAIR G I
Sbjct: 184 TKREIEALEWSAEGKSLADISILMRISVETVKAHLDSARYKLCALNRVHAVTKAIRAGLI 243


>gi|37223220|gb|AAQ90208.1| LuxR [Aliivibrio fischeri]
 gi|37223236|gb|AAQ90218.1| LuxR [Aliivibrio fischeri]
 gi|37223247|gb|AAQ90225.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 11/216 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +G +S +I++ LG S  TV  +L +A +KL+  NR
Sbjct: 197 CEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|15601642|ref|NP_233273.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121726448|ref|ZP_01679712.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147671672|ref|YP_001215191.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153802474|ref|ZP_01957060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153819712|ref|ZP_01972379.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153822367|ref|ZP_01975034.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|227812454|ref|YP_002812464.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229510178|ref|ZP_04399658.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229517693|ref|ZP_04407138.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|254850052|ref|ZP_05239402.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|298499668|ref|ZP_07009474.1| LuxR family transcriptional regulatory, chaperone HchA-associated
           [Vibrio cholerae MAK 757]
 gi|9658321|gb|AAF96785.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121631043|gb|EAX63420.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124121993|gb|EAY40736.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|126509730|gb|EAZ72324.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126520130|gb|EAZ77353.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146314055|gb|ABQ18595.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|227011596|gb|ACP07807.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227015536|gb|ACP11745.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229345729|gb|EEO10702.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229352623|gb|EEO17563.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|254845757|gb|EET24171.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297541649|gb|EFH77700.1| LuxR family transcriptional regulatory, chaperone HchA-associated
           [Vibrio cholerae MAK 757]
          Length = 253

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             ++S S   +   +    +         ++ +S LD    +++     ++  D G+  +
Sbjct: 26  QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 83

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                       H      P  W    +   +       V    G     G+  P+    
Sbjct: 84  AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 139

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185
              G V    + +  +     E              L +      +  L++RE   L L 
Sbjct: 140 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 199

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G    +IA  LG+S  T+  +L +A +KL      + I  AI+ G
Sbjct: 200 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246


>gi|167736315|dbj|BAG07414.1| AHL-dependent transcriptional regulator [Gluconacetobacter
           intermedius]
          Length = 236

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 76/229 (33%), Gaps = 9/229 (3%)

Query: 7   TGKKSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
             + +++  +L    L  + +        ++     L+     +       Y  +  +  
Sbjct: 14  DLENAATKHDLLSIYLDAVLSVGN-----VHVTIVELNRIEDPKENFIHVGYPTEWVNFY 68

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   D  +        P  W  I+     E      +R         G+  PV   
Sbjct: 69  IENNYIVSDPIIKKSRFMSHPYFWHEIKNINKAEKK---IIRDVSEFGIKKGLTIPVHTH 125

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                 + F      +  E+ +         IT + +L +    +   LT RE  CL   
Sbjct: 126 DRVIYAICFAFTDKNIDREIELYLRALSNFFITGYKKLDEPADMSLPILTPREKECLTWT 185

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +S E    +G+S  TVN ++ +A +KL   NRI  + +AI  G I
Sbjct: 186 AKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234


>gi|229505968|ref|ZP_04395477.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286]
 gi|229605500|ref|YP_002876204.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|229356319|gb|EEO21237.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286]
 gi|229371986|gb|ACQ62408.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
          Length = 250

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             ++S S   +   +    +         ++ +S LD    +++     ++  D G+  +
Sbjct: 23  QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 80

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                       H      P  W    +   +       V    G     G+  P+    
Sbjct: 81  AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 136

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185
              G V    + +  +     E              L +      +  L++RE   L L 
Sbjct: 137 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G    +IA  LG+S  T+  +L +A +KL      + I  AI+ G
Sbjct: 197 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243


>gi|317050861|ref|YP_004111977.1| regulatory protein LuxR [Desulfurispirillum indicum S5]
 gi|316945945|gb|ADU65421.1| regulatory protein LuxR [Desulfurispirillum indicum S5]
          Length = 243

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 9/187 (4%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
               H       +   +      D           P+ W   Q       +    +    
Sbjct: 62  TLVQHQCPEPWLETYVVRKLWRTDPVFQQVRRSPEPLRWSQTQNRHSPNPA----LLEAS 117

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKR 167
                 GI+     G      +        +     +           + +  + +  ++
Sbjct: 118 RHGLTDGISIG--YGAGNRTLISLAGSRQQIHAISSLACRVLPLLAPLIHSASVRIAHRQ 175

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                NL+ERE   L    +G ++EEI+  L +S  TV  +L     KLDAVNR  AIAK
Sbjct: 176 DIPDTNLSERERELLFWTAEGKSTEEISMILAISRDTVKYHLKRIYQKLDAVNRHHAIAK 235

Query: 228 AIRFGYI 234
           A+R G I
Sbjct: 236 ALRAGLI 242


>gi|86359968|ref|YP_471858.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284070|gb|ABC93131.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 264

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 81/243 (33%), Gaps = 16/243 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62
            ++ ++ + L  R+      +K   F         +   +D       + +L N   D  
Sbjct: 9   RRQFTTHETLEGRIDQAFEAMKQLGFEALIYDYTPVPYDIDGVIMVPSLLKLRNIAEDMH 68

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAG 117
           D          D           P  W    +   +             R         G
Sbjct: 69  DYWFDRGYFRIDPVQQVALRTSAPFFWNYDPDADTLIRRFMSEDTAPVTRYLSERDMSTG 128

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRS-SAA 171
           +  PV +       V           E      I + +   +        LF ++  S  
Sbjct: 129 VTVPVHMPRGDYATVTGIRFGRNSDFERHALRYIADFNLLAHVFHETAYALFDRKDKSVG 188

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE  CL+ + +GY+++EI+  +  SV TV  +L +A  KL A NR QA+ +A  +
Sbjct: 189 IRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRATHY 248

Query: 232 GYI 234
             +
Sbjct: 249 RLL 251


>gi|311279344|ref|YP_003941575.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308748539|gb|ADO48291.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 237

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 68/227 (29%), Gaps = 15/227 (6%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +  +L    N +   ++A   ++      +    I  + NY  +           Y D  
Sbjct: 13  IKNQLETTLNTLGDLSWAYVVLSK-----KDMSCIFGVTNYPDEWVTQYKEKGLQYTDPV 67

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    + L P  W          +  +L ++         G  F +    +    + F  
Sbjct: 68  VITALNRLTPFSWNEKLLVRSDFNFEKLFIQ-ASQFGIINGYTFVLHDNQNNLVTLSFII 126

Query: 137 EF-LMLANEVIIEAH-----GACYQVITDFL---ELFKKRSSAARNLTERETSCLQLAGD 187
                     ++  H          V   +L    L +K +      T RE   L     
Sbjct: 127 PAAKGAEIMELLIQHKGDISLLLASVHETYLTLTSLSEKDTDKHSQFTPRENEILHWTSL 186

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T +E    LG+ V TV  ++ +   K+   N   A+   +    I
Sbjct: 187 GKTYQETGMILGIKVRTVKFHMSNIVKKMGVANARHAVRLGVELQLI 233


>gi|9622950|gb|AAF89989.1|AF210630_2 AHL-dependent transcriptional regulator CinR [Rhizobium
           leguminosarum]
          Length = 241

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +   +                Y         + 
Sbjct: 15  EQIKAAANVDAAIRILQAEYNLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 72  SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +         ++           + +    +      +     L+ RE  CL 
Sbjct: 129 RALLSLNARIPADEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|327189685|gb|EGE56833.1| autoinducer transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 277

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +   +                Y         + 
Sbjct: 51  EQIKAAPNVDAAIRILQAEYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 107

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 108 SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 164

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +         ++           + +    +      +     L+ RE  CL 
Sbjct: 165 RALLSMNARIPADHWAELVRRCRNEWIEIAHLIHQKAVYELYGENDPVPALSPREIECLH 224

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 225 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 275


>gi|316931973|ref|YP_004106955.1| autoinducer-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315599687|gb|ADU42222.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 242

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 11/227 (4%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
               +    ELS  + +    +    FA   +   LD   R      +  Y  +      
Sbjct: 11  HLSSAEDQAELSGAMAVTAAALDLSCFAYLALPQKLDGTPR-----LMSTYPKEWTSHYL 65

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +        P  W     E  +  + +  +          G   P+  G 
Sbjct: 66  RSHYERIDPVIMQALRDTEPFRWGIGSTERYLSPAQKRLLDEASQYGIRLGFTVPIHDGH 125

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETS 180
                V F         E  + ++    Q++  F     +R  A+        L+ RE  
Sbjct: 126 GPVAAVTFAGNQREAQFERFVTSNPRMLQLMAMFFHSHVRRKLASDLRVDGAALSAREFE 185

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           CL+ A  G ++ +I   LG+S HT  +YL +A  KL     +QA  +
Sbjct: 186 CLEWAARGKSAWDIGRILGISHHTAISYLNNAKAKLGVRTVVQAALR 232


>gi|253987735|ref|YP_003039091.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638613|emb|CAR67232.1| similar to probable transcription regulator sdia of escherichia
           coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779185|emb|CAQ82345.1| similar to probable transcription regulator SdiA of Escherichia
           coli [Photorhabdus asymbiotica]
          Length = 242

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 10/222 (4%)

Query: 21  LHLIQNRIK-ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
           +  I   I     F L+++     FP   + +    NY      +         D  L  
Sbjct: 23  IDEICELIDKISGFRLFSLVLKTRFPVSGREVYFFDNYHESWRALYIEKKYWMIDPVLH- 81

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
               + P   +        ES+G+    +       +G+ F +       G      +  
Sbjct: 82  -FRPVPPTFSRVWDLNFFAESNGKELWYMTQEHGFRSGVTFGLPAFSGTYGIFSVAGKDG 140

Query: 140 MLANE-------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
            + N+        I++ +    + +    +  +       + + RE   L+   DG  S 
Sbjct: 141 PIDNDTMYKCSGEILKVYIRIIRYLISHTKYLQTFYIDEISFSHRELEVLRYTADGMISS 200

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  + ++  TV+ +L +   KL   N+ QAIAKA   GYI
Sbjct: 201 EIASTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAALLGYI 242


>gi|15966568|ref|NP_386921.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307300395|ref|ZP_07580175.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318260|ref|ZP_07597695.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15075839|emb|CAC47394.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
 gi|306895942|gb|EFN26693.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904561|gb|EFN35145.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 260

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 18/243 (7%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
           +TL G+    + ++   +  I    +A  +    +   LD       + +L N   D  D
Sbjct: 16  DTLDGR----IDQVFEAMKSIG--FEALIYDYTPVPRDLDGTIMVPSLLKLRNISEDMHD 69

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGI 118
                     D           P  W    +   +             R         G+
Sbjct: 70  YWFDRGYFRIDPVQQVALRTSTPFFWNYDPDADTLIRRFMSDDTAPVARYLSERDMSTGV 129

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFKKRS--SAA 171
             PV +       V         A E      I + +   +        LF  ++  +  
Sbjct: 130 TVPVHMPRGDYATVTGVRFGGNRAFEGHALRYIADFNLLAHVFHEAAYSLFDAQAFNAGT 189

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE  CL+ + +G++++EI+  +  SV TV  +L +A  KL A NR QA+ +A  +
Sbjct: 190 ARLTERERECLRYSAEGHSAKEISRIIHRSVPTVVMHLNAAAKKLGAKNRTQAVVRATHY 249

Query: 232 GYI 234
             +
Sbjct: 250 RLL 252


>gi|116249629|ref|YP_765467.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254277|emb|CAK03896.1| putative LuxR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 270

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 79/233 (33%), Gaps = 14/233 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +    +  I    +A  +    +   LD       + +L N   D  D          
Sbjct: 27  IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYWFNRGYFRI 84

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P  W    +   + +           R         G+  PV +    
Sbjct: 85  DPVQQVALRTSAPFFWNYDPDADTLINRFMTEDTAPVTRYLSERDMSTGVTVPVHMPRGD 144

Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSC 181
              V           E      I + +   +        LF  R+ +     LTERE  C
Sbjct: 145 YATVTGIRFGRNKDFERHALRYIADFNLLAHVFHETAYSLFDTRAKSVGTIRLTEREREC 204

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+ + +GY+++EI+  +  SV TV  +L +AT KL A NR QA+ +A  +  +
Sbjct: 205 LRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKKLGARNRTQAVVRATHYRLL 257


>gi|190894575|ref|YP_001984868.1| putative LuxR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|190700236|gb|ACE94318.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
 gi|327189865|gb|EGE57000.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 265

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 77/233 (33%), Gaps = 14/233 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +    +  I    +A  +    +   LD       + +L N   D  D          
Sbjct: 22  IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYWFDRGYFRI 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P  W    +   +             R         G+  PV +    
Sbjct: 80  DPVQQVALRTSAPFFWNYDPDADTLIKGFMSEDTAPVTRYLSERDMSTGVTVPVHMPRGD 139

Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKK--RSSAARNLTERETSC 181
              V           E      I + +   +        LF +  RS     LTERE  C
Sbjct: 140 YATVTGIRFGRNNDFERHALRYIADFNLLAHVFHEAAYSLFDRKARSVGTVRLTEREREC 199

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+ + +GY+++EI+  +  SV TV  +L +A  KL A NR QA+ +A  +  +
Sbjct: 200 LRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 252


>gi|241258818|ref|YP_002978702.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863288|gb|ACS60951.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 275

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 79/233 (33%), Gaps = 14/233 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +    +  I    +A  +    +   LD       + +L N   D  D          
Sbjct: 32  IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYWFNRGYFRI 89

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P  W    +   + +           R         G+  PV +    
Sbjct: 90  DPVQQVALRTSAPFFWNYDPDADTLINRFMTEDTAPVTRYLSERDMSTGVTVPVHMPRGD 149

Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSC 181
              V           E      I + +   +        LF  R+ +     LTERE  C
Sbjct: 150 YATVTGIRFGRNKDFERHALRYIADFNLLAHVFHETAYSLFDTRAKSVGTIRLTEREREC 209

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+ + +GY+++EI+  +  SV TV  +L +AT KL A NR QA+ +A  +  +
Sbjct: 210 LRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKKLGARNRTQAVVRATHYRLL 262


>gi|18104535|gb|AAL59595.1|AF393621_2 CinR [Rhizobium etli]
          Length = 241

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +   +                Y         + 
Sbjct: 15  EQIKAAPNVDAAIRILQAEYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 72  SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +         ++           + +    +      +     L+ RE  CL 
Sbjct: 129 RALLSMNARIPADHWAELVRRCRNEWIEIAHLIHQKAVYELYGENDPVPALSPREIECLH 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|229528208|ref|ZP_04417599.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229334570|gb|EEO00056.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
          Length = 250

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             ++S S   +   +    +         ++ +S LD    +++     ++  D G+  +
Sbjct: 23  QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 80

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                       H      P  W    +   +       V    G     G+  P+    
Sbjct: 81  AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 136

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185
              G V    + +  +     E              L +      +  L++RE   L L 
Sbjct: 137 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLEYSDPNRSALLSKREKEVLSLT 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G    +IA  LG+S  T+  +L +A +KL      + I  AI+ G
Sbjct: 197 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243


>gi|218661626|ref|ZP_03517556.1| autoinducer transcriptional regulator protein [Rhizobium etli
           IE4771]
          Length = 243

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +   +                Y         + 
Sbjct: 17  EQIKAAPHVDAAIRILQAGYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 73

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 74  SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 130

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +         ++           + +    +      +     L+ RE  CL 
Sbjct: 131 RALLSMNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 190

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 191 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 241


>gi|37223228|gb|AAQ90213.1| LuxR [Aliivibrio logei]
          Length = 232

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 82/216 (37%), Gaps = 11/216 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +G +S +I++ LG SV TV  +L +A +KL+  NR
Sbjct: 197 CEGKSSWDISKILGCSVRTVTFHLTNAQMKLNTTNR 232


>gi|332525929|ref|ZP_08402070.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109480|gb|EGJ10403.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 242

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 14/239 (5%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
           + L    +S       RL      +    F +      +  P +  ++  L N   D  +
Sbjct: 10  DFLDIGTASDHATFKSRLVSFAQNLD---FQIVQAVLMIKRPSQPSVVSRLSNLPSDFAE 66

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
                 ++  D  L    +  +P ++    + T +E+        +       GI+  + 
Sbjct: 67  ASMDEADSRRDPVLQRLRTASVPFVY---DQTTYVEAGAGDLWETQARYGFRTGISMSLH 123

Query: 124 LGFHKNGYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELF---KKRSSAARNLT 175
           +   +        E  + A+E     ++ +              +             LT
Sbjct: 124 MPGGRQFLFGVDREQALPADERELMRLMADLQLLAVHAQETAARVMMPKLDSLPKRPKLT 183

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   LQ   +G ++  I + L +S HTV  +L +A  KL+  ++  A+ KA+  G +
Sbjct: 184 PREREVLQWTREGKSAWAIGQILSMSEHTVVFHLRNAMTKLEVSSKHSAVLKAMEIGLL 242


>gi|254521823|ref|ZP_05133878.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14]
 gi|219719414|gb|EED37939.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14]
          Length = 230

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 79/231 (34%), Gaps = 7/231 (3%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  +++ SL  +   LH I   +      ++   + L     Q++     ++  +  D 
Sbjct: 4   LLELERARSLDAVGAVLHGIAAPLGYDRVLVFATGTGLKR-GTQRVYWINGDWLGEGSDT 62

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                  +      H      P  W     + +     Q+  +  G  L   G+  PV  
Sbjct: 63  DLA-GYLHACPVNRHVLDSDAPFFWSKR--QGLRGERYQVVKQPRGEGL--HGLQVPVFG 117

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQ 183
                G + F    +  +    ++   A          L +  ++ + +L + RE   L+
Sbjct: 118 TTGLEGAISFAGTSIDASASARLQLEAAATAAFRAARRLAEVPAALSGSLLSTREREVLR 177

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G    EIA  LGLS  TV  +L  A  +L      QA+  A R G I
Sbjct: 178 WVAAGRRQAEIATTLGLSARTVENHLRHARQRLGVATTAQAVRAATRRGEI 228


>gi|2791836|gb|AAC38403.1| transcriptional activator CarR [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 244

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           E+   +      +    F+ + ++              + NY     +          D 
Sbjct: 4   EIHSFIKRKLKGVGDVWFSYFMMSKT-----STSHPYIISNYPEAWMNEYLKKEMFLSDP 58

Query: 76  FLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            +    + + P  W          ++       +       +G  F +    +    +  
Sbjct: 59  IIVASLARITPFSWDDNDLVTLRAKNQDVFISSV--QHDISSGYTFVLHDHDNNVATLSI 116

Query: 135 TSEFLMLAN---------EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSC 181
            +                ++ +       +V+     +  +      +    L+ RET  
Sbjct: 117 ANHLEDADFEKCMKSHENDLQMLLVNVHEKVMAYQRAIKDQAKPPDSSRNALLSPRETEV 176

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L L   G T +E++  LG+S  TV  ++ ++  KLD +N   AI KA+    
Sbjct: 177 LFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|239908483|ref|YP_002955225.1| LuxR family transcriptional regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798350|dbj|BAH77339.1| LuxR family transcriptional regulator [Desulfovibrio magneticus
           RS-1]
          Length = 257

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 7/183 (3%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           NY ++          +  D  +    +   P  W    +        +  + L       
Sbjct: 75  NYPVEWLQTYKEKNFSGIDVIVKRNFTSFTPQYWDHTYKAHKP---AREFITLASDFNLI 131

Query: 116 AGIAFPVR--LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
            G  +  R      +     F+  F      VI         +      + + R      
Sbjct: 132 HGYTYGARPFGFCKQASLFSFSGNFKKYDPTVIAILQTIVPHLHLASSRIIESRLIQHNR 191

Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L     G +S +I+  L +S  TVN ++ +   KLD  NR QA+A A   
Sbjct: 192 KLLSGREREVLSWLKHGKSSWDISTILQISECTVNYHIYNIIKKLDVQNRPQAVAVATHL 251

Query: 232 GYI 234
           G +
Sbjct: 252 GIL 254


>gi|297580055|ref|ZP_06941982.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535701|gb|EFH74535.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 253

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 7/227 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             ++S S  ++   +    +         ++ +S LD    +++     ++  D G+  +
Sbjct: 26  QLEESHSFSKVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 83

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                       H      P  W    +   +       V    G     G+  P+    
Sbjct: 84  AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 139

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185
              G V    + +  +     E              L +      +  L++RE   L L 
Sbjct: 140 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 199

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G    +IA  LG+S  T+  +L +A +KL      + I  AI+ G
Sbjct: 200 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246


>gi|15966467|ref|NP_386820.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075738|emb|CAC47293.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
          Length = 247

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 4/231 (1%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            +      +  EL   +  + +R    +F +  +  A +    ++L   L N+  +    
Sbjct: 20  EIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERL--VLSNWPAELVQQ 77

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
            +        + +       LP+     + E     +     +RL          A  + 
Sbjct: 78  YDAGETFQTSELVERLRQTKLPVTGGPELMEPAGKGAGKAAFIRLPPHAGMGH-FAVLLH 136

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
             + +    + +      A       + A  Q+       F   S A   L+ RE  CL+
Sbjct: 137 TTYGEPFVAVLSGTRDEPAGAERATLYLALLQLFECLERTFDAGSGAREKLSSREVECLR 196

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A  G +S+EIA  LG+S +TV++Y  SAT KLDAVNR+QAIA+A+R   I
Sbjct: 197 WAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247


>gi|13472562|ref|NP_104129.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023308|dbj|BAB49915.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 256

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 5/226 (2%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + ++ +   R   I   I A  F LY ++ + +    + + C   +Y   +      +  
Sbjct: 33  AVTIPDAVRRCRWISVDINASAFGLYFVSPSPERA--RLVPCFDSDYPGIAVAT-KFIAG 89

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL--PFAGIAFPVRLGFHK 128
             G++ + H ++   P  W       + E  G L+   +   L    +GIAFPV     +
Sbjct: 90  ANGEEIVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQLSPLAPGTSGIAFPVHADRGQ 149

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G V+F    + L  + + E H  C+ +      +    +   R +++RE  CL+L  +G
Sbjct: 150 CGLVVFLGSKMALPQDALYEIHARCFSLFAAVARIRPSDAGRMRAISKRELECLKLTANG 209

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TSEEIA  L LSVHT N YL  +T KL+AVNR QA+AKA+R G I
Sbjct: 210 NTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|209552217|ref|YP_002284132.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539329|gb|ACI59261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 258

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 82/233 (35%), Gaps = 14/233 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +    +  I    +A  +    +   LD       + +L N   D  D          
Sbjct: 22  IDQAFEAMKQIG--FEALIYDYTPVPYDLDGAIMIPSLLKLRNIADDMHDYWFDRGYFRI 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P  W    +   + +           R         G+  PV +    
Sbjct: 80  DPVQQVALRSTAPFFWNYDTDADTLINRFMSDDTAPVARYLNERDMSTGVTVPVHMPGGD 139

Query: 129 NGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSC 181
              V         EF   A   I + +   +        LF K++ +     LTERE  C
Sbjct: 140 YATVTGIRFGGNSEFERHALRYIADFNLLAHVFHETAYSLFDKKALSVGTVRLTEREREC 199

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+ + +G++++EI+  +G SV TV  +L +A  KL A NR QA+ +A  +  +
Sbjct: 200 LRHSAEGFSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 252


>gi|326326038|ref|YP_004250847.1| putative transcriptional activator protein solR-LuxR [Vibrio
           nigripulchritudo]
 gi|323669089|emb|CBJ93133.1| Putative transcriptional activator protein solR-LuxR [Vibrio
           nigripulchritudo]
          Length = 232

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 15/231 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           ++++ ++  +LH + N ++  NFA       ++       I  ++ Y     DI      
Sbjct: 11  ANTVSDVKCQLHKLANLLEFDNFAF---GIKVNNLTGIPTIDMINTYSDQWNDIYKKNNF 67

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +   ++   PIIW+                 +        G + P       + 
Sbjct: 68  ISKDPIVLEGSATSNPIIWEESL------KPTHEIFEIANDFNLNIGWSKPSHKPNGVSS 121

Query: 131 YVIFTSEFLMLANEVII----EAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQL 184
              F+     L    +                 F  +       S    LT RE   L+ 
Sbjct: 122 LFSFSRSSESLTEAELWKQTPYLLWVANIAEQAFERVNSGYHGYSLVEVLTPREIEILKW 181

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235
           + +G T+ E +  L +S  TV  ++ +A  KL+  N+  A+ KA+  G +C
Sbjct: 182 SAEGKTASETSMILSISERTVTFHITNAVKKLNTCNKTSAVIKAVTLGLVC 232


>gi|37223233|gb|AAQ90216.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 11/216 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +G +S +I++ LG S  TV  +L +A +KL+  NR
Sbjct: 197 CEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNR 232


>gi|153825393|ref|ZP_01978060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|255746365|ref|ZP_05420312.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262158280|ref|ZP_06029397.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|262169155|ref|ZP_06036848.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262192074|ref|ZP_06050237.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|149740939|gb|EDM55016.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|255736119|gb|EET91517.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262022436|gb|EEY41144.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262029962|gb|EEY48609.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|262032056|gb|EEY50631.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|327485870|gb|AEA80276.1| transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 239

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 7/227 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             ++S S   +   +    +         ++ +S LD    +++     ++  D G+  +
Sbjct: 12  QLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGII-ERIYWIEGDWFDD-GENID 69

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                       H      P  W    +   +       V    G     G+  P+    
Sbjct: 70  AATYIKYCPITRHIIETDRPFFWTKKPD---VNREQYRVVAKPKGSGI-HGLQIPIFGHL 125

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLA 185
              G V    + +  +     E              L +      +  L++RE   L L 
Sbjct: 126 GLEGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLT 185

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G    +IA  LG+S  T+  +L +A +KL      + I  AI+ G
Sbjct: 186 ALGRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 232


>gi|189218591|ref|YP_001939232.1| LuxR family transcriptional regulator [Methylacidiphilum infernorum
           V4]
 gi|189185449|gb|ACD82634.1| Transcriptional regulator LuxR family [Methylacidiphilum infernorum
           V4]
          Length = 251

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 80/226 (35%), Gaps = 7/226 (3%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           E    L  IQ  I +   A   +        ++ L    H++  D             D 
Sbjct: 24  EFKTVLKKIQELIPSSLIACGLVKINSLNEVKKMLKIINHSFPSDLIAFYLQQKYQKADP 83

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP-VRLGFHKNGYVIF 134
            +         I+ ++       ++     ++    +    G++F  V    ++     F
Sbjct: 84  VVKTALRLRGNIVRRTEIFRYFQDNFRSQYLKDASDISLHTGLSFGIVEEKTYRASLFSF 143

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQLAGDG 188
             + +  +       +G  Y +    L      E+ K    + + LT RE   L+   DG
Sbjct: 144 CDKEIEKSPRHETILNGLKYPLHLALLNCSHPQEVEKPAKESPQALTARELEILKWIMDG 203

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+ EI+  L +S  TV  +L +  +KLD  NR QA+A A     +
Sbjct: 204 KTNWEISCILKISEATVKFHLKNIFLKLDVQNRCQAVATAFHRRLL 249


>gi|190892657|ref|YP_001979199.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT
           652]
 gi|190697936|gb|ACE92021.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 260

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +   +                Y         + 
Sbjct: 34  EQIKAAPNVDAAIRILQAEYGLDFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 90

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 91  SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 147

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +         ++           + +    +            L+ RE  CL 
Sbjct: 148 RALLSMNARIPADGWSELVRRCRNEWIEIAHLIHQKAVYELYGEHDPVPALSPREIECLH 207

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 208 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258


>gi|149907939|ref|ZP_01896607.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
 gi|149808945|gb|EDM68876.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
          Length = 244

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 7/228 (3%)

Query: 10  KSSSLQE-LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +++S  + +S  L      I  +  A   I++ ++F    +      N   +  +I    
Sbjct: 19  RANSNSDSISDILTKTNELIPFQ-AATIAIDTNIEFALTAKQQIFTQNLSEEWQEIYFQR 77

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    +    + W++   +    S      ++    +   G++  V+     
Sbjct: 78  KFFNQDPILSAIANTTSAVDWRTATSQANYISDD--FKQMSKKYVGSDGLSILVKT-DVG 134

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAG 186
           +  +        L  E           +   F    +  ++S    NL++RE   L  A 
Sbjct: 135 STLISLVIPESSLDAEHNQLIEYIAPHIHEVFNRQGENIRKSLWKPNLSKRELEVLNWAK 194

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G ++ + +  L +S  TV  +  +   KL+ VNR QAIA+AI FG +
Sbjct: 195 EGKSNWDTSLILAISERTVKFHFSNIFKKLEVVNRSQAIARAIHFGLV 242


>gi|209550247|ref|YP_002282164.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536003|gb|ACI55938.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 241

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 11/231 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  +   +   + ++Q          +   +                Y         + 
Sbjct: 15  EQIKAAANVDAAIRILQAEYGLGFVTYHLAQTIASKIDSP---FVRTTYPDAWVSRYLLN 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +       LP  W  ++       +  + V  +   +   G + PV     +
Sbjct: 72  SYVKVDPIVKQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              +   +   +     ++           + +    +      +     L+ RE  CL 
Sbjct: 129 RALLSVNARIPVEEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G   ++I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|290454885|emb|CBI67623.1| sR protein [Pseudomonas fuscovaginae]
          Length = 237

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 59/208 (28%), Gaps = 11/208 (5%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           F  Y++      P          NY                D  + H  +   P+ W + 
Sbjct: 34  FEQYSLGLRFPLPISSPKFHLSSNYSPAWESAYIDNNYFSIDQTVKHGLTEHRPLCWSAD 93

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN----EVIIE 148
                  +                G   P R      G +        + +    E   +
Sbjct: 94  -----AFTEHLHFWEDAKYYQLVHGWCTPSRAKHDTMGMLSLVRSASPITSLEFNEKETK 148

Query: 149 AHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                +   +  L           A  LT RE   L+ +  G T  E    L +   TV 
Sbjct: 149 LLWISHIAHSTMLNFIAPNYIPEIAATLTVREVETLKWSATGKTYTETGLILSIDERTVK 208

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L +A  KL + N+++A  KA   G +
Sbjct: 209 FHLVNAMRKLHSSNKVEAAMKAYALGML 236


>gi|2495418|sp|Q46751|CARR_PECCC RecName: Full=Transcriptional activator protein CarR
 gi|765139|gb|AAC45995.1| CarR [Pectobacterium carotovorum]
          Length = 244

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           E+   +      +    F+ + ++              + NY                D 
Sbjct: 4   EIHSFIKRKLKGVGDVWFSYFMMSK-----NSTSQPYIISNYPEAWMKEYIKKEMFLSDP 58

Query: 76  FLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            +    + + P  W          ++       +       +G  F +    +    +  
Sbjct: 59  IIVASLARITPFSWDDNDIVTLRAKNQDVFISSV--QHDISSGYTFVLHDHDNNVATLSI 116

Query: 135 TSEFLMLAN---------EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSC 181
            +                ++ +       +V+     +  + +    +    L+ RET  
Sbjct: 117 ANHLEDANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINDQDNPPDNSRNALLSPRETEV 176

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L L   G T +E++  LG+S  TV  ++ ++  KLD +N   AI KA+    
Sbjct: 177 LFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|254462681|ref|ZP_05076097.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2083]
 gi|206679270|gb|EDZ43757.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 244

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 15/220 (6%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L+ +   ++        +N+  D       +     YD    +          D  L   
Sbjct: 31  LNDLCENLELDYATYCAVNTVSDQ------VIGFTTYDDAWKEHYTSQRFQNIDPTLHLP 84

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
              + PI WQ ++E        ++        +   G++ P+   + + G +  T +  +
Sbjct: 85  MRSIAPIDWQRLREHR---DFDRVFEHARDFKIKDQGLSVPIHGPYGEVGLISVTRDCSL 141

Query: 141 LANEVII-----EAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEI 194
              E +      E   A   +    ++      +     L+ RE   LQ    G +  +I
Sbjct: 142 GTWEKLRKNVITELQTAAVSLHDTVMQSDTLGYALRRPQLSSRECEVLQWTAAGKSQIDI 201

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L +S  TV  +L SA  KL A++  QA+ +AI  G+I
Sbjct: 202 GVILTISSRTVEVHLRSARSKLSALSTPQAVGRAIGMGFI 241


>gi|307292969|ref|ZP_07572815.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881035|gb|EFN12251.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 263

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 2/200 (1%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            F    +      PR  +    + NY  +             D           P  W  
Sbjct: 35  GFPYVAMIQHGGLPRLVERALVITNYPAEFVRFYTESHAYVIDPVYEVSQLLDRPFSWDE 94

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANEVIIEAH 150
           I     +  +               G+  P+ +    +    F      M +  ++   H
Sbjct: 95  IPGYVDLTGTQSALFEEARLHGLVHGVTVPLHIPSESHASCTFARAEPIMASPSLLTTLH 154

Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                     L L    R      LT RE  C  L   G +  EI++ LGLS  +V  ++
Sbjct: 155 IVAAFGFKAGLRLHHASRGHDVPRLTRREAQCTALVAVGKSDWEISQILGLSETSVRYFV 214

Query: 210 GSATVKLDAVNRIQAIAKAI 229
             A  +     R + +A+A+
Sbjct: 215 SHAKQRYGVYKRSELVARAL 234


>gi|260430562|ref|ZP_05784535.1| regulatory protein, LuxR [Citreicella sp. SE45]
 gi|260418591|gb|EEX11848.1| regulatory protein, LuxR [Citreicella sp. SE45]
          Length = 253

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 79/250 (31%), Gaps = 24/250 (9%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYD 58
           +SE +  G++   +     ++      +      +    + S          + E  N  
Sbjct: 12  LSEGSHLGQR---VDAAFRQMQG----VGFDGMIYDYTPMVSGPGADVPIPSVFEQRNLG 64

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE-----ETVIESSGQLSVRLEGGLL 113
            +     +       D           P  W    +       ++    +  +       
Sbjct: 65  DEMRQHWSEDEYIRLDPVQRVAMRSAAPFCWSYDSDIDSIIRPMLTPDIEPVMSYLRERE 124

Query: 114 PFAGIAFPVRLGFHKNGYVI---------FTSEFLMLANEVIIEAHGACYQVITDFLELF 164
            F+G+  P+ L       V          ++        ++ + AH      + + L   
Sbjct: 125 VFSGVTVPIHLPNGDFATVTGVSLGRRQNWSGGTSRAIADLSLIAHLFNQSAV-ELLGFD 183

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +  +    LT RE  CL  A  G +++E A  +  SV TV  +L +A  KL A NR  A
Sbjct: 184 HEDGTQEVRLTPRERECLTYASFGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHA 243

Query: 225 IAKAIRFGYI 234
           +  A R   I
Sbjct: 244 VTIATRRRLI 253


>gi|218672647|ref|ZP_03522316.1| transcriptional regulator, LuxR family protein [Rhizobium etli
           GR56]
          Length = 265

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 20  RLHLIQNR-IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
               ++    +A  +    +   LD       + +L N   D  D          D    
Sbjct: 32  AFEAMKRLGFEALIYDYTPVPYDLDGAIMIPSLLKLRNIADDMHDYWFGRGYFRIDPVQQ 91

Query: 79  HFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                  P  W        + +           R         G+  PV +       V 
Sbjct: 92  VALRSSAPFFWNYDTNADTLINRFMSDDTAPVTRYLRERDMSTGVTVPVHMPGGDYATVT 151

Query: 134 FTSEFLMLANEV-----IIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAG 186
                     E      I + +   +        LF +  RS    +LTERE  CL+ + 
Sbjct: 152 GIRFGEDSDFERHALRYIADFNLLAHVFHETAYSLFDRKARSVGTIHLTERERECLRHSA 211

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +GY+++EI+  +G SV TV  +L +A  KL A NR QA+ +A  +  +
Sbjct: 212 EGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 259


>gi|150397799|ref|YP_001328266.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150029314|gb|ABR61431.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 247

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 2/230 (0%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            +      +  EL   +  + +R    +F +  +  A +    ++L+  L N+  +    
Sbjct: 20  EIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLM--LSNWPAELVQQ 77

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
            +          +       LPI       E   + +G+    L       A  A  +  
Sbjct: 78  YDASETFQASLLIERLRQTKLPIAGGPELMEPARKGAGKAPAILLPPHADMAHFAVLLHT 137

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
            + +   V+ + +    A       + A  Q+       F   S A   L+ RE  CL+ 
Sbjct: 138 TYGEPFVVVLSGKRDEPAGGERATLYLALVQLFECLERTFDAGSGAREKLSSREIECLRW 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G +S+EIA  LG+S +TV++Y  SAT KLDAVNR+QAIA+A+R   I
Sbjct: 198 AAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247


>gi|312959686|ref|ZP_07774203.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas fluorescens WH6]
 gi|311286403|gb|EFQ64967.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas fluorescens WH6]
          Length = 254

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 87/237 (36%), Gaps = 14/237 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
            SL E      L+  ++      +    + +  D       + EL N   D   +     
Sbjct: 16  RSLDEQMDNTFLLAQQLGFDALVYDYTPVPTDQDGALITPSVLELRNTPPDWHALWCGKG 75

Query: 70  ETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
               D       S + P +W          + +I+                 G++ P+ L
Sbjct: 76  FYQIDPVQHLALSTVSPFVWSYEAKTDTPLQKIIDPCHAPVSSYLHDQQLTCGVSVPIHL 135

Query: 125 GFHKNGYVI-----FTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTER 177
                  +        S  L  A + + E     + +      LF  + R+    +LT+R
Sbjct: 136 PRGGFASLTGLRTGKASSVLQDAQQTLSEFSVISHALQEAAYPLFSKELRTYPYIHLTKR 195

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E  CL+ A +G T+ +IA +L  S+  V+ +L SA  KL A NR+QA+ +A  +  +
Sbjct: 196 ERECLKWAAEGLTAAQIATQLSRSLAVVSLHLASAMHKLGAKNRVQAVVRATHYRLL 252


>gi|2873371|gb|AAC38168.1| CarR [Serratia marcescens]
          Length = 244

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 23/230 (10%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +  +L    N +    FA + ++ +            + NY     D          D  
Sbjct: 9   IERKLKAYGNVL----FAYFMMDKS-----SLSNPVFISNYPQKCIDTYIDNKLFINDPV 59

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           + +    + P  W       +   +  +++ L        G  F +    +    +   +
Sbjct: 60  IHYSLKRVTPFSWDDNDLAVLRSENEDVAMYLR-EHDITVGYTFVLHDHDNNLAILTIAN 118

Query: 137 EFLMLANEVII-----EAHGACYQVITDFL---ELFKKRSSAARNL-----TERETSCLQ 183
                  E  I     +            +      K +++    L     T RET  L 
Sbjct: 119 NDEKNDFEDFIKNRENDLQMLLVTTHEKAMKHKHFVKGKTAPLDCLQSALITPRETEVLF 178

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L   G T +E++  LG+S  TV  ++ ++  KL+ +N   AI+KA+    
Sbjct: 179 LVSRGNTYKEVSRTLGISEATVKFHINNSVRKLNVINSRHAISKALELNL 228


>gi|170694163|ref|ZP_02885318.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170140903|gb|EDT09076.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 262

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 65/225 (28%), Gaps = 9/225 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH----NYDLDSGDIPNILIET 71
           +++  +    +      F  Y I+              L      Y  D           
Sbjct: 39  DITSLVESFGHEAGKLGFPHYMISRVTRSRSTSTRRTALEMIGARYPQDWVRYYQRRDYA 98

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D           P  W  I     +  + +  +   G     AG++ PV         
Sbjct: 99  STDPVHRAAFLQSAPFRWHDI---IGLSKAERRLLDEAGEAGLRAGLSIPVHQSDGSILL 155

Query: 132 VIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGY 189
              +     + + +          Q   +   L    S   A  LT R+  CL     G 
Sbjct: 156 FNLSGPLRSVNDTINSRLAYLISVQFHYELHRLALIPSRRMAHLLTARQLECLTWVARGK 215

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS EI E LG S +TV  ++  A   L+  +R  A   A   G I
Sbjct: 216 TSAEIGEILGRSRYTVEFHIKEAMDALNIRSRTAAAVHATVQGII 260


>gi|90797252|gb|ABD97988.1| transcriptional activator AlpR [Azospirillum lipoferum]
          Length = 234

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 7/223 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +    L  R       +    +A   +    D  +         NY  +           
Sbjct: 16  TDEDALFRRFESAATELGYPFYAFGALWGDPDAIKLNPAPAVRLNYPAEWVAHYFSTGYN 75

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  +         + W  ++                      +GIA P+R        
Sbjct: 76  KIDPVVLVAPYAQTSVTWDELRSYRP------EFFDDAATFGLRSGIAIPLRAIQGCYVL 129

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            + + +   +  +         + +   +  L +   +    LT      ++L+  G ++
Sbjct: 130 CVASGDDRPIRPKERARLELFAHGLFAAYQRLRE-LPAQDHGLTANTVQVIRLSMAGLST 188

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EI  +L L++  V+  L  A  KL   N  Q   KAI+ G +
Sbjct: 189 AEICSRLKLTMDGVHWCLKDARKKLKCANTAQVYLKAIQQGIV 231


>gi|78222725|ref|YP_384472.1| LuxR family transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193980|gb|ABB31747.1| transcriptional regulator, LuxR family [Geobacter metallireducens
           GS-15]
          Length = 246

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 75/237 (31%), Gaps = 13/237 (5%)

Query: 4   NTLTGKKS-SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
             +   +S + ++ L    H + + +     A+                    +Y  +  
Sbjct: 14  ELIDASRSCADMERLKRLFHSLNDLLSFD-MAVCGTARFDGAGTMNAQQIINISYPEEWL 72

Query: 63  DIPNILIETYGDDFLFH--FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
            +         D  +     +    P  W     +       Q  + L        G +F
Sbjct: 73  SLYAEHDFAAVDPVVRAHIADFSAKP--WSEAYLKWG---RPQPFLSLAEDFGIRKGYSF 127

Query: 121 PV---RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            V            +  + ++ +   +++       ++ +   ++     S+    LT R
Sbjct: 128 GVLSSNDRTASIFSLCVSEKYPVHTPQILDILAPYFHEALRRTVQTDL-PSACLATLTPR 186

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   +    +G    EI+  LG+S  TV  +  +   KL A NR  A+A AI  G I
Sbjct: 187 EIEVISWLANGKNYWEISVILGISERTVKFHTSTIVQKLGAANRSHAVAIAISTGLI 243


>gi|253987738|ref|YP_003039094.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638616|emb|CAR67235.1| similar to probable transcription regulator sdia of escherichia
           coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779188|emb|CAQ82348.1| similar to probable transcription regulator SdiA of Escherichia
           coli [Photorhabdus asymbiotica]
          Length = 242

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 87/234 (37%), Gaps = 27/234 (11%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + E+   ++ I        F+L+++     FP   + +   +NY     ++         
Sbjct: 23  VSEVFEIINKI------SGFSLFSLILKARFPISNREVYFFNNYHESWRNLYIERKYWMI 76

Query: 74  DDFLFHFNSGLLPI------IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           D  L        P+      IW         ES+GQ    +       +GI F +     
Sbjct: 77  DPTL-----NFRPVPPSFSKIWDLDFFS---ESNGQELWYVSQKHGFRSGITFGLPAFSG 128

Query: 128 KNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
             G      +   + NE        I+  +    + +T   +  +       + + RE  
Sbjct: 129 TYGIFSVAGKDGHIDNETMYKCSGEILGVYIRIIRYLTSHTKYLQFFYVDETSFSNRELE 188

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   DG TS EIA  + ++  TV+ +L +   KL   N+ QAIAKA+  GYI
Sbjct: 189 VLRYTADGMTSSEIALTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAVLLGYI 242


>gi|188533099|ref|YP_001906896.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99]
 gi|188028141|emb|CAO95998.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99]
          Length = 240

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 68/232 (29%), Gaps = 20/232 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +S +L    + +    +A   ++      +    I  + NY  +           Y D  
Sbjct: 11  ISKQLEAALSDLGEFIWAYVVLSK-----KDMSCIFGVTNYPGEWVKQYREKGLQYTDPV 65

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT- 135
           +    + L P  W             +L  R         G  F +    +    + FT 
Sbjct: 66  VITSLNRLTPFAWDENLLAGSGFRFSKLFDRAR-EFGVTNGYTFVLHDYNNNLVTLSFTF 124

Query: 136 SEFLMLANEVII-----EAHGACYQVITDFLEL--------FKKRSSAARNLTERETSCL 182
           +                E       V   +L L         + RS  A   TERE   L
Sbjct: 125 TPECRAEATETFIKNKGEISLLLASVHETYLTLTSLSEKNASRSRSENASRFTERENEIL 184

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T  E A  LG+   TV  ++ +   KL   N   AI   +    I
Sbjct: 185 YWASVGKTYPETAMILGIKTCTVKFHMSNIVKKLGVANARHAIRLGMELQLI 236


>gi|229589152|ref|YP_002871271.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361018|emb|CAY47880.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 254

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 84/237 (35%), Gaps = 14/237 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
            SL E      ++  ++      +    +    D       + EL N   D   +     
Sbjct: 16  RSLDEQMDNTFILAQQLGFDALVYDYTPVPIDQDGALITPSVLELRNTPPDWHALWCSKG 75

Query: 70  ETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
               D       S + P +W          + +I+                 G++ P+ L
Sbjct: 76  FYQIDPVQHLALSTVSPFVWSYDVKVDTPLQKIIDPCHAPVSTYLHDQQLTCGVSVPIHL 135

Query: 125 GFHKNGYVI-----FTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTER 177
                  +           L  A + + +     + +      LF  + R+    +LT+R
Sbjct: 136 PRGGFASLTGLRTGKAHSVLQDAQQTLSDFSLISHALQEAAYPLFSKELRTYPHIHLTKR 195

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E  CL+ A DG T+ EIA +L  S+  V  +L SA  KL A NR+QA+ +A  +  +
Sbjct: 196 ERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHYRLL 252


>gi|227112193|ref|ZP_03825849.1| quorum-sensing transcriptional activator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 244

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           E+   +      +    F+ + ++              + NY                D 
Sbjct: 4   EIHSFIKRKLKGVGDVWFSYFMMSK-----NSTSQPYIISNYPEAWMKEYIKKEMFLSDP 58

Query: 76  FLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            +    + + P  W          ++       +       +G  F +    +    +  
Sbjct: 59  IIVASLARITPFSWDDNDLVTLRAKNQDVFISSV--QHDISSGYTFVLHDHDNNVATLSI 116

Query: 135 TSEFLMLAN---------EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSC 181
            +                ++ +       +V+     +  + +    +    L+ RET  
Sbjct: 117 ANHLEDANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINVQDNPPDNSRNALLSPRETEV 176

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L L   G T +E++  LG+S  TV  ++ ++  KLD +N   AI KA+    
Sbjct: 177 LFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|222086655|ref|YP_002545189.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724103|gb|ACM27259.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 243

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 78/235 (33%), Gaps = 6/235 (2%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S    T   + +    +  L    +       A      + D       +    +    
Sbjct: 13  LSAELAT---ARTQTAFAQALERTSSAFGFSQVAFLNAPVSEDSMLTP--LVIEGSVQPQ 67

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIE-SSGQLSVRLEGGLLPFAGIA 119
                +          L      ++P  W  +++    +    +    L        GI 
Sbjct: 68  FLRDFDRQQLLRRCPMLQRVRDSVMPRAWHLLEKNISQDMELPRELHALLLSHNCPMGIV 127

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
            P+     +     F      L    + E +    Q    +  + +   S    L+ RE 
Sbjct: 128 IPINSSDGQRLVFWFMGNRSSLGQSELNELNMIMLQAHDIYNCIKRNDGSVLHMLSAREL 187

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++    G TS EI + L LS HTVNAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 188 EVVRWTAQGKTSVEIGQILSLSDHTVNAYMMNAIKKLDCVNRTQLVAKAIRLKLI 242


>gi|251787751|ref|YP_003002472.1| LuxR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536372|gb|ACT04993.1| transcriptional regulator, LuxR family [Dickeya zeae Ech1591]
          Length = 250

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   +           +A   +N           +  + NY  +  DI       + D  
Sbjct: 15  IQNFIDRKLKSYGDLKYAYLIMNKKKPTD-----VVIISNYPPEWVDIYRSNNYQHIDPV 69

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT- 135
           +    + + P  W      +      ++   L        G  F +    +    + F  
Sbjct: 70  ILTAINKISPFSWDDDLVISSKLKFSRIFN-LSKEYDIVNGYTFVLHDPGNNLATLSFMV 128

Query: 136 SEFLMLANEVIIE-----AHGACYQVITDFLELFKK--------RSSAARNLTERETSCL 182
            E      E II+                   L ++        +   A   ++RE   L
Sbjct: 129 EEHRSSELEEIIQNNRDKLQMLLISAHEKLTSLHREMSRNRHNSKPQEADIFSQRENEIL 188

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T +EIA  LG++  TV  ++G+   KL  +N   AI   +    I
Sbjct: 189 YWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|260461786|ref|ZP_05810032.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785327|ref|YP_004144803.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032427|gb|EEW33692.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171215|gb|ADV14753.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 245

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 11/205 (5%)

Query: 29  KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88
              +FA  ++ S             + NY                D  +    +G  P  
Sbjct: 37  DLLSFAYLSLPSLPSG-----KPKLISNYPPRWAMQYLENQYEKLDPVILRARNGGRPFQ 91

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148
           W S      +  + Q             G+  P+     +   V F ++        +IE
Sbjct: 92  WGSDLWGGKMSPAQQQLFDEAARFSIRCGLTIPIVDLRGRTAAVTFAADEPRPVFLRVIE 151

Query: 149 AHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +    Q++        +R            LT RE  CL+ A  G ++      LG+  
Sbjct: 152 RYEQALQLMATCFHRCVRRKLPGDRTVDGILLTSREYMCLRSAARGNSAWVTGRILGIKP 211

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227
            T+  +L +A  KL    + QAIA 
Sbjct: 212 RTIAFHLENAKKKLGVRTQNQAIAL 236


>gi|92109679|ref|YP_571965.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802761|gb|ABE65133.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 234

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 70/223 (31%), Gaps = 14/223 (6%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   +           +A   +++               +Y ++  +I      T  D  
Sbjct: 21  IHNAIKNFTVASGFDRYAYIHVHAGDGVGFT--------DYPVEWQNIYLEKRYTVIDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSG-QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
           +      +    W +        S   +            +G++ P+R  + +   +   
Sbjct: 73  VTTAKRTMKMFAWSAEDPTVWRGSREIKQFYSEATDFGIRSGVSVPIRTSYGRTAMITLA 132

Query: 136 SEFLM---LANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           S+         + +  A       +          +     +L+ +E + L  +  G + 
Sbjct: 133 SDRRQVELPPWDPMQAALALAYIHIHLSLASASSLKVGEV-SLSAQEATSLSWSSHGKSM 191

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             IA+ LG+   TV  YL +A  KL A N  QA+  A+    I
Sbjct: 192 NVIADLLGIKPRTVQFYLDNARDKLGASNLQQAVRIAMEKKLI 234


>gi|190014846|ref|YP_001967610.1| TraR [Agrobacterium tumefaciens]
 gi|71849649|gb|AAZ50597.1| TraR [Agrobacterium tumefaciens]
          Length = 234

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  I        +A   I          + I  + NY  +             D  
Sbjct: 21  LKTGLADIAEHYGFTGYAYLHIQH--------RHITAVTNYHREWQSTYFDKKLVALDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE   +    +            +GI  P+R            S
Sbjct: 73  VKRARSRKHIFTWSGEQERPSLSRDERSFYARAADFGIRSGITIPIRTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           +  ++  +  I+A  A   +      +   R++        L  +E S L+    G T E
Sbjct: 133 DKPVIDLDREIDAVAAASTIGQIHARISYLRTTPTAEDAAWLDPKEASYLRWIAVGMTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+  G+  ++V   L  A  + D  ++   IA AIR   I
Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDVHSKAHMIALAIRRKLI 234


>gi|116250449|ref|YP_766287.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255097|emb|CAK06171.1| putative GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 234

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            ++ +  +    L          NFAL  I+ A   P  ++ I   +  +   G     L
Sbjct: 16  SRAINRTDFFRLLKSAAQHYNFDNFALARISEA-SAPFGERDIVITNVAERRVGLFITTL 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
            E  G            P+  +S Q E        +      G+  F     P+     +
Sbjct: 75  KEALGTVRAKTAQFLATPVHGRSAQPEDYPSD--LVFNEFLSGVFLF----IPLFTPEGR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              ++   E        I +      ++     E        +  LT+RE+  ++   +G
Sbjct: 129 RYCLVLCGERQEPDQSEIADMLLDAMRIFDKLYE-EILTPEMSGRLTQRESEIVKWTSEG 187

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TS EIA  LGLS HTVN+++ +A  KLDAVNR+  +A A+R G +
Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|190573818|ref|YP_001971663.1| putative LuxR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011740|emb|CAQ45360.1| putative LuxR family transcriptional regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 234

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 7/235 (2%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  +++ SL  +   L  I   +      ++   + L+    Q++     ++  D
Sbjct: 4   LVQALLEMERARSLSAVGAVLRGIAAPLGYDRVLVFATGTGLER-GTQRVYWIEGDWFGD 62

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             D        +      H      P  W     + V     Q+  +  G  L   G+  
Sbjct: 63  GSDTDLA-GYLHACPVNRHVLDSDAPFFWSK--HQGVRGERYQIVKQPRGEGL--HGLQV 117

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERET 179
           PV       G +      +  +    ++   A          L +  +  +   L+ RE 
Sbjct: 118 PVFGTTGLEGAISVAGTSIDASASARLQLAAAATAAFRAARHLVESPAELSGSALSTRER 177

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+    G    EIA  LGLS  TV  +L  A  +L      QA+  A R G I
Sbjct: 178 EVLRWVAAGRRQAEIAATLGLSTRTVENHLRHARQRLGVATTAQAVRAANRRGEI 232


>gi|218461489|ref|ZP_03501580.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 234

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            ++ +  +    L          NFAL  I+ A   P  ++ +      +   G     L
Sbjct: 16  SRAINRTDFFRLLKAAAQHYHFDNFALARISEA-SAPFGERDVVITSVPERRVGLFIATL 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
            ET G            P+       E     S +L      G+  F     P+     +
Sbjct: 75  KETLGTVRAKSAQFLATPV--HGRSAEPDTYPSDRLFNEFRSGVFLF----IPLFTPEGR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              ++ + E        I +      ++     E        +  LT+RE+  ++   +G
Sbjct: 129 RYCLVLSGEREEPDQGEIADLLLDAMRIFDKLYE-EILTQEMSGRLTQRESEIVKWTSEG 187

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TS EIA  LGLS HTVN+++ +A  KLDAVNR+  +A A+R G +
Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|307315516|ref|ZP_07595067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306898770|gb|EFN29428.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 234

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 12/228 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + + +  +  L  +   +    +A   +     F         + NY  +  D       
Sbjct: 15  ARTREMFNGALTELARELGFEYYAYLNLQPVGTFA--------VSNYSPEWQDRYFSKSF 66

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
           +  D  +    S +    W S     V     +       G    +GI  PV   F +  
Sbjct: 67  SEIDPVVQIAKSTMRAFTWSSENTRKVKSRRVRQFYLDAAGFGIRSGITIPVATAFRRIA 126

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAG 186
            +   S    L   + I+   A   V    + +     +  +  +  +T ++   L+ + 
Sbjct: 127 MLTIASHKPSLLLNLDIDPVAAATAVAQLHVRIEQAQIEPTAKPSIRMTAKQALMLKWSS 186

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G +  EIA    ++   VN ++ +A  KL A  + QA A A +   I
Sbjct: 187 EGKSMSEIATIENMTYANVNFHMNNARRKLGASTQAQATALATKLRLI 234


>gi|86356279|ref|YP_468171.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280381|gb|ABC89444.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 234

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            ++ +  +    L          NFAL  I+ A   P  ++ I   +  +   G     L
Sbjct: 16  SRAINRTDFFRLLKAAAQHYHFDNFALARISEA-SAPFGERDIVITNVAERRVGLFIATL 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
            E  G            P+       ++    S  L      G+  F     P+     +
Sbjct: 75  REALGTTRAKSAQFLATPV--HGRSAQSDTYPSDLLFNEFRSGVFLF----IPLFTPEGR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              ++ + E        I +      ++     E        +  LT+RE+  ++   +G
Sbjct: 129 RYCLVLSGEREEPDQGEIADMLLDAMRIFDKLYE-EILTPEMSGRLTQRESEIVKWTSEG 187

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TS EIA  LGLS HTVN+++ +A  KLDAVNR+  +A A+R G +
Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|123441908|ref|YP_001005891.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088869|emb|CAL11676.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 244

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +++   +           ++   +N              + NY LD             D
Sbjct: 13  EDIKNYIQRRIKAYGDLRYSYLVMNKKTPL-----HPTIISNYPLDWVKKYKKNSYHLID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +      + P  W         +S+     +L        G  F +    +    +  
Sbjct: 68  PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNI 126

Query: 135 T-SEFLMLANEVIIEA-----HGACYQVITDFLEL-------FKKRSSAARN--LTERET 179
           +      ++ +  IE                 L L        + R+        + RE 
Sbjct: 127 SNGSDDSISFDESIEINKEKIQMLLILTHEKMLGLYQSNSDKNENRNPKIERDIFSPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EI+  LG+   TV  ++G+   KL  +N   AI   I    I
Sbjct: 187 EILYWASVGKTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|117619760|ref|YP_858670.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561167|gb|ABK38115.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 203

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 57/228 (25%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           K+    ++  +L    +++    F  + +        ++  +   +N      D  +   
Sbjct: 15  KAKKTSDIQQQLERFSHQM---GFDYFRLLIIFPISMQKSHVALFNNCPTSWFDAYSERH 71

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +F       PI W  +                                    +
Sbjct: 72  YLTQDPVVFLGLKQTQPIFWNKLDC---------------------------------DS 98

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCLQLAG 186
            ++   S                   +    L+L K R    + LTE   RE  CL  A 
Sbjct: 99  PWLPSAS------------------YIFNSALQLIKSRPDLMKYLTELSDREKECLFWAS 140

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G TS EIA  LG+S  TVN +L   T K D+ NR QAIAK+I  G I
Sbjct: 141 EGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 188


>gi|37524335|ref|NP_927679.1| hypothetical protein plu0320 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783758|emb|CAE12615.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 242

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 86/234 (36%), Gaps = 23/234 (9%)

Query: 16  ELSPRLHL-IQNRIK-ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           ++ P     I   I     F+L+++     FP   + +   +NY     D+         
Sbjct: 17  DVDPHFVAEICELINKISGFSLFSLLLKARFPISNREVYFFNNYHESWRDLYIEKKYWMI 76

Query: 74  DDFLFHFNSGLLPI------IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           D  L        P+      IW         +S+GQ    +       +GI F +     
Sbjct: 77  DPVL-----NFRPVPPSFSKIWDLDFFS---KSNGQELWYVNQKYGFRSGITFGLPAFSG 128

Query: 128 KNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
             G      +   + NE        I+  +    + +T   +  +       + + RE  
Sbjct: 129 TYGIFSVAGKDGPIDNETMYKCSGEILGVYIRIIRYLTSHTKYLQSFYIDETSFSNRELE 188

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   DG TS EI+  + ++  TV+ +L +   KLD  N+ QAIAKA   GYI
Sbjct: 189 VLRYTADGMTSIEISSTICVTKSTVDFHLMNIVKKLDCKNKFQAIAKAALLGYI 242


>gi|163758741|ref|ZP_02165828.1| putative AHL-dependent transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284031|gb|EDQ34315.1| putative AHL-dependent transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 239

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   +   +   +  +   +   + +              Y  +             D  
Sbjct: 21  VEEAVFAFRAEYQVAHATYHLAQTTISALDS---AYVRTTYSAEWVSRYLQRNYVDIDPV 77

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L       LP  W  ++    +     L        L  +G + P+     +   +   S
Sbjct: 78  LKEGVQRQLPFDWSELEMSAAVLP---LFEDALAHGLGPSGYSIPIIDKNFRRALLSINS 134

Query: 137 EFLMLANEVIIEAHGACYQ-----VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
                A   ++  H A +      +    ++     +  A +L+ RE  CL LA  G   
Sbjct: 135 FETGEAWSDLVNRHKAAWAEAAFLIHDMAMKEIHGGNDQALHLSPREIECLTLAARGKDH 194

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++IA  LGLS HTV  YL SA  KL +VN  QAIA+AIR   I
Sbjct: 195 KDIALILGLSGHTVQGYLKSARHKLGSVNIPQAIAEAIRSRII 237


>gi|222066056|emb|CAX21483.1| ppoR luxR family protein [Pseudomonas putida]
          Length = 235

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 10/222 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
                +  +  +  +     +N  +    +   +    NY  +  +          D   
Sbjct: 19  QRLFDIAVHLAQNLDMVYLGLNVRIQIATQTPRLYLYSNYPKEWIERYQRDEFYKQDAAA 78

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              +S  +P++W         +       +         G    +    H    +     
Sbjct: 79  NASHSSTMPVLWNDDLYREAPK-----FRQAACQYGLCHGWTQSLHDLQHNESQISVARP 133

Query: 138 FLMLANEVIIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSE 192
              +    + +        C+ +     E            +++RE   L+ +  G T+ 
Sbjct: 134 TGTIGITELYDKAGSVQWLCHTLHAVLGEYHLNALCPPQPKMSKRELEVLKWSAAGKTAA 193

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++A  L LS  TVN ++ S   K  A N+  A+A A   G+I
Sbjct: 194 DVACILSLSQSTVNFHIRSVITKTSAANKAGAVAIAALRGWI 235


>gi|209547895|ref|YP_002279812.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533651|gb|ACI53586.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 234

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 8/226 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            ++ +  +    L          NFAL  I+     P  ++ I   +  +   G     L
Sbjct: 16  SRAINRTDFFRLLKSAAQHYNFDNFALARISET-SAPFGERDIVITNVAERRVGLFITTL 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
            E  G            P+  +S++ E     S  +      G+  F     P+     +
Sbjct: 75  KEALGTVRAKSAQFLATPVHGRSVRPEDY--RSDLVFNEFLSGVFLF----IPLFTPEGR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              ++ + E        I +      ++     E        +  LT+RE   ++   +G
Sbjct: 129 RYCLVLSGERQEPDQSEIADMLLDAMRIFDKLYE-EILTQEMSGRLTQREQEIVKWTSEG 187

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TS EIA  LGLS HTVN+++ +A  KLDAVNR+  +A A+R G +
Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|83593514|ref|YP_427266.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576428|gb|ABC22979.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 239

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 78/230 (33%), Gaps = 14/230 (6%)

Query: 19  PRLHLIQNRIKARNFA-----LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             L     +  A  FA        +  A D       I E  N  +D  +I         
Sbjct: 10  AHLDAACRQAMALGFAAVLYDYSPVPRAHDGTLITPTILETRNLPVDMAEIWCKQGYYQI 69

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P +W    +++ + +       +  +          G+  P+R G   
Sbjct: 70  DPVQDAALLVSAPFVWSHEGDQSDVMARVLRAEHRPVLDYLRHRGLTRGVTVPIRCGEGA 129

Query: 129 NGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQL 184
                  +         + +                 F   S      +LT RE  CL L
Sbjct: 130 LATFTAIAPSGAPFPPEDRLSSLGLLGQSFHDRVYPGFPAASHLCPVVHLTRRERECLAL 189

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G+G T++EIA ++  SV TV  +L +AT KL A NR QAIA+A  +  +
Sbjct: 190 CGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARAAYYRLL 239


>gi|294664209|ref|ZP_06729588.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292606021|gb|EFF49293.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 254

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 78/244 (31%), Gaps = 17/244 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62
           G+   +LQ L   L  +   + A  F         +  +L+       +    N   D  
Sbjct: 9   GRDLQALQTLDSCLDRVFRNVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQ 68

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAG 117
            +         D           P +W    + +           +   R         G
Sbjct: 69  HVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGSCPGVEYVGGQHRQVTRYLCDSGMGTG 128

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSA 170
           +  P+ L            +        + EA           +Q     L   ++R   
Sbjct: 129 VTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCH 188

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE  CLQ +  G TS+ IA  L  S  TVN +L SA  KL A NR++A+ + + 
Sbjct: 189 HIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMH 248

Query: 231 FGYI 234
           +  +
Sbjct: 249 YRLL 252


>gi|294625280|ref|ZP_06703918.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292600401|gb|EFF44500.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 254

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 78/244 (31%), Gaps = 17/244 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62
           G+   +LQ L   L  +   + A  F         +  +L+       +    N   D  
Sbjct: 9   GRDLQALQTLDSCLDRVFRDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQ 68

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAG 117
            +         D           P +W    + +           +   R         G
Sbjct: 69  HVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGSCPGVEYVGGQHRQVTRYLCDSGMGTG 128

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSA 170
           +  P+ L            +        + EA           +Q     L   ++R   
Sbjct: 129 VTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCH 188

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE  CLQ +  G TS+ IA  L  S  TVN +L SA  KL A NR++A+ + + 
Sbjct: 189 HIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMH 248

Query: 231 FGYI 234
           +  +
Sbjct: 249 YRLL 252


>gi|4883696|gb|AAD31608.1|AF065246_2 conjugal transfer regulatory protein [Agrobacterium tumefaciens]
          Length = 234

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  I        +A   I          + I  + NY  +             D  
Sbjct: 21  LKTGLADIAEHFVFTGYAYLHIQH--------RHITAVTNYHREWQSTYFDKKLVALDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE   +    +            +GI  P+R            S
Sbjct: 73  VKRARSRKHIFTWSGEQERPSLSRDERSFYARAADFGIRSGITIPIRTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           +  ++  +  I+A  A   +      +   R++        L  +E S L+    G T E
Sbjct: 133 DKPVIDLDREIDAVAAASTIGQIHARISYLRTTPTAEDAAWLDPKEASYLRWIAVGMTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+  G+  ++V   L  A  + D  ++   IA AIR   I
Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDVHSKAHLIALAIRRKLI 234


>gi|241203072|ref|YP_002974168.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856962|gb|ACS54629.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 234

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            ++ +  +    L          NFAL  I+ A   P  ++ +   +  +   G     L
Sbjct: 16  SRAINRTDFFRLLKSAAQHYNFDNFALARISEA-SAPFGERDVVITNVAERRVGLFITTL 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
            E  G            P+       +  +  S  +      G+  F     P+     +
Sbjct: 75  KEALGTVRAKTAQFLATPV--HGRSAQPEVYPSDLVFNEFLSGVFLF----IPLFTPEGR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              ++ + E        I +      ++     E        +  LT+RE+  ++   +G
Sbjct: 129 RYCLVLSGERQEPDQSEIADILLDAMRIFDKLYE-EILTPEMSGRLTQRESEIVKWTSEG 187

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TS EIA  LGLS HTVN+++ +A  KLDAVNR+  +A A+R G +
Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|78048691|ref|YP_364866.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926244|ref|ZP_08187599.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78037121|emb|CAJ24866.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543331|gb|EGD14759.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 254

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 76/247 (30%), Gaps = 15/247 (6%)

Query: 1   MSENTLTGKKSSS-LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDL 59
           +  +    +   S L  +   +  +    ++  +    +  +L+       +    N   
Sbjct: 8   LGCDLQALQTLDSCLDRVFRDVCALG--FQSLVYDYAPVPLSLEGALITPTVFMQRNAPG 65

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLP 114
           D   +         D           P +W    +             +   R       
Sbjct: 66  DMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCAGVEYVGGQHRQVTRYLCDSGM 125

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSS 169
             G+  P+ L            +        + EA         +       EL + +  
Sbjct: 126 GTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQVLPFLLLAHAFQARAQELLEPQER 185

Query: 170 AAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LT RE  CLQ +  G TS+ IA  L  S  TVN +L SA  KL A NR++A+ +
Sbjct: 186 RCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVR 245

Query: 228 AIRFGYI 234
            + +  +
Sbjct: 246 GMHYRLL 252


>gi|218682848|ref|ZP_03530449.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 230

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 85/234 (36%), Gaps = 5/234 (2%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           M    L G ++ SL   +  L  + +     +  L    S+ D     + +    +    
Sbjct: 1   MLSAELAGARTRSL--FAQALGRVSSAFGLSHATLMHAPSSEDLLL--RPLLIETSLPAA 56

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                +      G  F        +P +W  + +    ++       L       AGIA 
Sbjct: 57  YIREFDRAHMMRGCPFGLRLRESAVPPVWH-LNDAVNGQAFPAELRALMLRHAIPAGIAM 115

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P      +     F  E   LA   + E        +  +  + +        L+ RE  
Sbjct: 116 PTITADGQRLVFWFCGERAALAQSEVNELAMIILHALDAYNAVKRNEECTHNALSIRELE 175

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++    G TS EI + L LS HTVNAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 176 VVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 229


>gi|116253270|ref|YP_769108.1| LuxR/GerE family transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257918|emb|CAK09016.1| putative LuxR/GerE family transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 238

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 3/224 (1%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +    +  L  I       +  L    S  D   +   +    +         +    
Sbjct: 17  ARTRSLFAQALGRISTAFGLSHATLMHAPSPEDLLLKP--LLIESSLPAAYVRDFDRAHM 74

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             G  F     +  +P  W  + + +  ++       L       AG+A P      +  
Sbjct: 75  MRGCPFGVRLRASAVPPAWH-LNDASNGQAFPAELRALMLRHAIPAGVAMPTTAADGQRL 133

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
              F  E   L    I E        +  +  + +    A   L+ RE   ++    G T
Sbjct: 134 VFWFCGERAALGQSEINELVMIILHALDAYNAVKRNEECAHNALSNRELEVVRWTAQGKT 193

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S EI + L LS HTVNAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 194 SIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 237


>gi|134291173|ref|YP_001114942.1| response regulator receiver protein [Burkholderia vietnamiensis G4]
 gi|134134362|gb|ABO58687.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 260

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 16/228 (7%)

Query: 16  ELSPRLHLIQNRIKARNFALYTIN-SALDFPRRQQLI---CELHNYDLDSGDIPNILIET 71
           ++S     + + +    F  Y +   AL   R +  I       +Y  +           
Sbjct: 39  DISSLSDSLGDAVLPLGFPCYAVTRIALTCYRSRPSISMEAICTHYPNNWVQHYLQHNYG 98

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D       +   P  W  I + +  E   +  +          G++ P+R        
Sbjct: 99  AVDPVHRAAFTSSGPYRWADITDLSQNE---RHVLAEACDAGLKNGLSIPIREIGGSILL 155

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAG 186
           +  +     +      +       VI++   L   R +         L+ R+  CL    
Sbjct: 156 INLSGPSSRINTGTKRQL----ASVISNLFRLELDRLAPPHPNEFIQLSPRQRQCLSWVA 211

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G TS +I   L +S HTV  ++  A   L+  +RI A   A  +G +
Sbjct: 212 QGKTSSDICMILKISRHTVEYHITEAMRVLNVNSRIAAAVIASNYGLL 259


>gi|294637446|ref|ZP_06715736.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC
           23685]
 gi|291089387|gb|EFE21948.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC
           23685]
          Length = 239

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 17/232 (7%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            Q++   +    +      FA   +N      +    I  + NY  +   +         
Sbjct: 9   AQDIKRFIDQSLSYYGQLQFAYLLLNK-----KNPTEITIISNYPDEWVTLYKEHHYQQI 63

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + +    + P +W         + +      L        G  F +    ++   + 
Sbjct: 64  DPVVIYALRRVSPFLWDEKI-TVNAKLNLSKIFSLAKKYQVNKGYTFVLHDADNQLAMLS 122

Query: 134 FTSEFLMLA--NEVIIEAHGACYQVITDFLELFKKRSSAARNL---------TERETSCL 182
              +   L+   +               F+   ++      N+         + RE   L
Sbjct: 123 LMVDDHSLSIVEQNQGALQMLLINAHERFMTGQRQLQVQQHNIKSNNMENIFSARENEIL 182

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T +EIA  LG+   TV  ++G+   KL  +N   AI   +    I
Sbjct: 183 YWASMGKTYQEIALILGIKSGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 234


>gi|110633760|ref|YP_673968.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284744|gb|ABG62803.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 241

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 11/232 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            +   S + +   + L+++ +   + + + +N +   P     +               +
Sbjct: 14  VETVRSAKNIEEAIFLLRDGLGLAHVSFH-LNVSGAAPLDYPYVR--TTLPSQWISRYVL 70

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  +    S L P  W  ++     E   +         +   G + P    F 
Sbjct: 71  RTYVGHDPVMREGFSSLRPFSWHELEMS---EKEREFMEDARSHGIGAQGYSIPTVDRFS 127

Query: 128 KNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCL 182
           +   +  T++  +      I  H          +    L        +   L  RE  CL
Sbjct: 128 RRSLLSLTADLDLGLWAGFIRRHASSVIEISQVLHQKALNELGIGEPSGATLAPRERECL 187

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                G  S++IA  L LS +TV +YL +A  KL      QA+A A R   I
Sbjct: 188 LWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRII 239


>gi|222149400|ref|YP_002550357.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736383|gb|ACM37346.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 241

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 3/234 (1%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSG 62
            TL   + ++++       +++   +A   +  +I  A        L   +     ++ G
Sbjct: 7   QTLLSTEITAMESREHCAEILRTVAQAFGLSHGSILLAPCATDVHLLPLVMETTLPMEFG 66

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV--IESSGQLSVRLEGGLLPFAGIAF 120
              +          +  F   +LP  W     E     E        L        G+ F
Sbjct: 67  HEFDRHQFVKFCPVVKKFAGSILPRTWDMKFREPNDMAEEWPPAMRDLMMRFKLIVGVVF 126

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
                  +  ++ F  +   L+   + E       V   +  L +        L+ RE  
Sbjct: 127 IFPSLDSRLYFMRFDGDRSPLSQCEVNELGMLAMAVFDTYDRLRRTELMNVDVLSVRELE 186

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+    G TS EI + L LS HT+NAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 187 VLRWTAQGKTSVEIGQILSLSDHTINAYMTTAMKKLDCVNRTQLVAKAIRLKLI 240


>gi|207722200|ref|YP_002252637.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2]
 gi|206587375|emb|CAQ17958.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2]
          Length = 459

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
            ++ +  P  +  +     Y                D  +    S    I+W        
Sbjct: 262 YSARMPLPVSKPAVAIFDTYPAGWMQHYQANGFLDIDPTVRAGASSGDMIVWP-----VS 316

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGAC 153
           I                  G+A          G +        L    +       H   
Sbjct: 317 IRDEAARLWSDARDAGLNVGVARSSWTAHGAFGLLTLARHADPLTAAELGRLSIATHWLA 376

Query: 154 YQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               T        +     N  LT RE   L   G+G T+ EI + L +S  TVN ++ +
Sbjct: 377 NLAHTLMSPFLVPKLVPESNAVLTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNN 436

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
             +KL A N++QA+ KAI  G I
Sbjct: 437 VLLKLAATNKVQAVVKAIATGLI 459


>gi|330973265|gb|EGH73331.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 240

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     +     L       L     N D   GD   
Sbjct: 21  TISELDGQTAIENALEWLRRECNSERAMFFQFKGPL------LLTFITSNVDEAWGDAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ    +  + +       L         I++      
Sbjct: 75  QHDLIMQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +   +  E       ++     + +     +R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|190890329|ref|YP_001976871.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695608|gb|ACE89693.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 234

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 8/226 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            ++ +  +    L          NFAL  I+ A   P  ++ +   +  +   G     L
Sbjct: 16  SRAINRTDFFRLLKAAAQHYHFDNFALARISEA-SAPFGERDVVITNVPERRVGLFIATL 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
            E  G+           P+       E     S +L      G+  F     P+     +
Sbjct: 75  REALGNVRAKSAQFLATPV--HGRSAEPAAYPSDRLFNEFRSGVFLF----IPLFTPEGR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              ++ +          I +      ++     E        +  LT+RE   ++   +G
Sbjct: 129 RYCLVLSGVREEPDQGEIADMLLDAMRIFDKLYE-EILTHEMSGRLTQREAEIVKWTSEG 187

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TS EIA  LGLS HTVN+++ +A  KLDAVNR+  +A A+R G +
Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|66045102|ref|YP_234943.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63255809|gb|AAY36905.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 240

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     +     L       L     N D   GD   
Sbjct: 21  TITELDGQTAIENALEWLRRECNSERAMFFQFKGPL------LLTFITSNVDEAWGDAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ    +  + +       L         I++      
Sbjct: 75  QHDLIMQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +   +  E       ++     + +     +R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|222080193|ref|YP_002540056.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221738838|gb|ACM39617.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 227

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  I +      +A   I          + I  + NY  +   +         D  
Sbjct: 14  LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHPEWQSVYFDKKFDALDPV 65

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W    E   +    +            +GI  P++            S
Sbjct: 66  VKRARSRKHIFTWSGEHERPTLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 125

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           E  ++  +  I+A  A   +      +   R++        L  +E + L+    G T E
Sbjct: 126 EKPVIDLDREIDAVAAAGTIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTME 185

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+  G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 186 EIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 227


>gi|116049068|ref|YP_792130.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584289|gb|ABJ10304.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 243

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 4/234 (1%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59
           + ++    +K+++ + +   +     R+      + ++           +L     ++  
Sbjct: 8   LFDSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAE 67

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
                              H      P  W     E     + ++   +   L    G+ 
Sbjct: 68  GRSAQERD-AYLLHCPVTRHILELDEPFFWSKNPSEDPARMTYRIVRGVR-DLGQVNGMQ 125

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178
            PV       G V F  E L L     + A   C  +      L    S+  A+ L+ERE
Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              LQ    G    E+A  L +S  TV  +L +A  +L A +  QA+A+A+R G
Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|325919969|ref|ZP_08181953.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325549544|gb|EGD20414.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 254

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 17/244 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62
           G+   +L  L+  L  +   + A  F         +  +++       +    N   D  
Sbjct: 9   GRDLQALHTLNACLDRVFRDVCAFGFKSLVYDYAPVPLSMEGALITPSVFMQRNAPGDMR 68

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-----IESSGQLSVRLEGGLLPFAG 117
            +         D         + P +W    +        +    +   R         G
Sbjct: 69  HVWCEHGYYQHDPVQQRATRRMTPFVWSYRTDGNQEGVEYVGGQHRQVTRYLCDSGMGTG 128

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAAR 172
           +  P+ L            + +      + EA         +       EL   +     
Sbjct: 129 VTVPLHLPGGAFATFSGAVDAVAAEAPRLAEAQLSPFLLLAHAFQARAQELLDPQERRCH 188

Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE  CLQ +  G T++ IA  L  S  TVN +L SA  KL A NR++A+ + + 
Sbjct: 189 HIALTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMH 248

Query: 231 FGYI 234
           +  +
Sbjct: 249 YRLL 252


>gi|15965591|ref|NP_385944.1| putative transcription regulator HSL-dependent protein
           [Sinorhizobium meliloti 1021]
 gi|307302711|ref|ZP_07582467.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318559|ref|ZP_07597993.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15074772|emb|CAC46417.1| Quorum sensing system, AHL autoinducer-binding, luxR family,
           regulator of sinI [Sinorhizobium meliloti 1021]
 gi|306895899|gb|EFN26651.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306903075|gb|EFN33666.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 245

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 15/229 (6%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            +      L++      +        A   P   ++    H +   + +I         D
Sbjct: 20  ADPERFFALMRRTFNISHLLYL---EAESLPDGLRICRLHHTFGAYAAEIYAARGLYRID 76

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGYVI 133
             L     G+ P+ W + +         +        +     G+A P+     +   + 
Sbjct: 77  PILKLALGGVRPVEWATARRR---FPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLA 133

Query: 134 FTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLA 185
             +    +         + +   A        LE      +       LT RET  L  +
Sbjct: 134 IGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWS 193

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +  EIA  LG+S  TV  ++ +A  KL+ V+  QA+A A+R   I
Sbjct: 194 AAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALI 242


>gi|16519697|ref|NP_443817.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a
           [Sinorhizobium fredii NGR234]
 gi|2495425|sp|P55407|TRAR_RHISN RecName: Full=Probable transcriptional activator protein traR
 gi|7465594|pir||T02771 probable transcription activator traR - Rhizobium sp. plasmid
           pNGR234a
 gi|158429605|pdb|2Q0O|A Chain A, Crystal Structure Of An Anti-Activation Complex In
           Bacterial Quorum Sensing
 gi|158429606|pdb|2Q0O|B Chain B, Crystal Structure Of An Anti-Activation Complex In
           Bacterial Quorum Sensing
 gi|2182351|gb|AAB91637.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a
           [Sinorhizobium fredii NGR234]
          Length = 236

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 66/219 (30%), Gaps = 12/219 (5%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            L    +      FA    +           +   H+Y      I         D  L  
Sbjct: 26  ALRSFAHSCGYDRFAYLQKDGTQ--------VRTFHSYPGPWESIYLGSDYFNIDPVLAE 77

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                    W +        S  +             G+  PV   +     + F S   
Sbjct: 78  AKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFASPER 137

Query: 140 MLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            +    +++   A   ++    +L     K   +  + L+ RE  CL  A  G T+   A
Sbjct: 138 KVDISGVLDPKKAVQLLMMVHYQLKIIAAKTVLNPKQMLSPREMLCLVWASKGKTASVTA 197

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G++  TV  YL  A  KLDA +  Q +A A   G +
Sbjct: 198 NLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV 236


>gi|260462698|ref|ZP_05810904.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319782267|ref|YP_004141743.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259031604|gb|EEW32874.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317168155|gb|ADV11693.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 240

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 67/218 (30%), Gaps = 2/218 (0%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
           P L  +   ++   F    ++      ++   + EL+ +                D    
Sbjct: 21  PLLDDVLLTVRNLGFEHLILSGVPLGGQKLAPMVELNGWPEGWFKRYVEAEHAAVDGVCI 80

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
           +    L P +W  +  +       +            +G A P+    H    + F S  
Sbjct: 81  YSAKTLKPFLWADVPAKWSDTKGSRRVAGEATEFGISSGFAVPMLSVHHWQSVLSFASSA 140

Query: 139 --LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
               L+    ++              L          LTERE   L  A  G TS E ++
Sbjct: 141 KVCALSPREEVQLVTMAVYAGMAIQALSHGDEVEEGLLTEREKEVLLWAAAGKTSSETSQ 200

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LGL+  TV  +   A          QAI +A+R   I
Sbjct: 201 ILGLAERTVKWHATRAREAFGVATTTQAIVEAVRRRMI 238


>gi|242237587|ref|YP_002985768.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242129644|gb|ACS83946.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech703]
          Length = 236

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 70/228 (30%), Gaps = 13/228 (5%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
              +   L           +A   +N           +  + NY  +  +          
Sbjct: 12  RAAIQNHLARNLQCYSGLKYAYLIMNKRFPTD-----MVIISNYPSEWVNTYKKRNYNSI 66

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  +    + + P  W             QL            G  F +    +    + 
Sbjct: 67  DPVILTAVNKVSPFSWNDNMVRNSRLKLPQLF-EHARQYDICNGYTFVLHDQNNHMATLS 125

Query: 134 FTSEFLML-----ANEVIIEAHGACYQVITDFLELFKKRSSAARNL--TERETSCLQLAG 186
             ++ +         ++ +       + ++ + EL + R   + ++  +ERE   L  A 
Sbjct: 126 LAADNIENMIHGNQEKLQMLLIATHEKTLSLYRELAESRQHRSNDMLFSERENDILYWAS 185

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T +EIA  LG+   TV  ++G+   KL   N   AI   I    I
Sbjct: 186 MGKTYQEIALILGIKTSTVKFHIGNVVRKLGVTNAKHAIRMGIEMNLI 233


>gi|85708570|ref|ZP_01039636.1| two-component transcriptional regulator, LuxR family protein
           [Erythrobacter sp. NAP1]
 gi|85690104|gb|EAQ30107.1| two-component transcriptional regulator, LuxR family protein
           [Erythrobacter sp. NAP1]
          Length = 236

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 72/227 (31%), Gaps = 7/227 (3%)

Query: 13  SLQELSPRLHLIQNRI---KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +L E+S  L  ++++     A   + + +  A D    +      H +  +   +     
Sbjct: 10  TLVEISDVLTYVRDQAIKAGAARMSYH-VTPAFDQQTSRTAAVYAHGFSDEWMALYAKEE 68

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D            + WQ            +             G   P+     ++
Sbjct: 69  FRLTDPIPGRVMQFGSLMTWQDAMSWQHNTPDQEAYFAKMKEYDLIHGFGIPLYGRNARD 128

Query: 130 GYVIFT--SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
            Y  F        +A E I              + L + +   A  L+ERE   L  A  
Sbjct: 129 AYASFDFLKHVDDVAPESIGMIRSLSQVAHQRVVILVEHKLD-APALSEREVEVLTWAAR 187

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G +   IA  L +S  T   Y      KLD  +R+ A+ KA+R G +
Sbjct: 188 GKSLSAIATILDISPDTAKTYSKRIYAKLDVSDRVGAVVKALRMGLV 234


>gi|325917294|ref|ZP_08179515.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536514|gb|EGD08289.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 254

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 12/214 (5%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           +    +  +++       +    N   D   +         D           P +W   
Sbjct: 39  YDYAPVPLSMEGGLITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98

Query: 93  QEETVIE-----SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
            +          +  +   R         G+  P+ L       +    + +      + 
Sbjct: 99  TDGNRPGVEYVGAQHRQVTRYLCDSGMGNGVTVPLHLPGGAFATLSGAVDAVAAEAPRLA 158

Query: 148 EAHG-----ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200
           EA         +       EL   +        LT RE  CLQ +  G T++ IA  L  
Sbjct: 159 EAQLSPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTAKSIAAALNR 218

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TVN +L SA  KL A NR++A+ + + +  +
Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|150396769|ref|YP_001327236.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150028284|gb|ABR60401.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 78/229 (34%), Gaps = 14/229 (6%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            +      L++      +        A   P   ++    H +   + ++  +      D
Sbjct: 20  ADPERFFALMRRTFNIAHLLYL---EAESLPDGLRICRLHHTFGAYAAEVYAVRGLHRID 76

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             L     G+ P+ W +            L V  E   L   G+A P+     +   +  
Sbjct: 77  PILKLALGGVRPVEWATA--RRRFPECEPLFVAAEEIGLSTEGVALPLPSPAGRMALLAI 134

Query: 135 TSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLA 185
           ++    +         + +   A        LE      +        LT RET  L  +
Sbjct: 135 SANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGAMEDERDLRLTGRETEVLTWS 194

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +  EIA  LG+S  TV  ++ +A  KL+ V+  QA+A A+R   I
Sbjct: 195 AAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALI 243


>gi|330940036|gb|EGH43227.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 240

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     +     +       L     N D   GD   
Sbjct: 21  TISELDGQTAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDEAWGDAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ    +  + +       L         I++      
Sbjct: 75  QHDLITQDPVIRCYRNQLGFLNWQEAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +   +  E       ++     + +     +R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|9297035|sp|O54452|RAIR_RHIET RecName: Full=Transcriptional activator protein raiR
 gi|2897879|gb|AAC38173.1| RaiR [Rhizobium etli]
          Length = 242

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 10/196 (5%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
           A  +            L+     Y  +             D  +     G LP+ W +  
Sbjct: 42  AYGSPCDLAGATDSNPLLML--TYPPEWVKQYRDRDYFSIDPVVRLGRRGFLPVEWSASG 99

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-----EVIIE 148
            ++    +           +   G+  PVR    +      TS            + + +
Sbjct: 100 WDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRD 157

Query: 149 AHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                + +    + L   ++ +    L+ RE  CL++  +G  +++I  +L +SV  V  
Sbjct: 158 LQFLAHHLHDRAMVLSGMRKVADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQL 217

Query: 208 YLGSATVKLDAVNRIQ 223
           YL SA  KL      +
Sbjct: 218 YLASARRKLTVATTSE 233


>gi|103488066|ref|YP_617627.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978143|gb|ABF54294.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 250

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 5/226 (2%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +SS+  L   L      +    FA   ++  +           +H+Y     D+      
Sbjct: 16  ASSIDHLHEALTRATRDMGFDRFA---LSLEIGCGADSSTSLLIHDYPASWADVYIGFNL 72

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D         +L   W++I +   +    + +           G   P  L     G
Sbjct: 73  AASDPVRRAAERSVLGFGWRNILDLVPMTEIEKTTFETGRRHGLADGFTVPRHLPGDVTG 132

Query: 131 YVIF-TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDG 188
              F T     + + ++I A       I    +L    S + +  LT+R+  C+  A  G
Sbjct: 133 SCSFVTGLGKSIPHAMLIVAEMLGAMAIASARQLSGWTSRSVQPRLTDRQRDCVLWAARG 192

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T  EI+  L +S  TV  +L  A  + +   R   I  A+  G I
Sbjct: 193 KTDWEISRILDISHETVIQHLKDARERYETHKRASLILYALYDGLI 238


>gi|302185070|ref|ZP_07261743.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
          Length = 240

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 74/228 (32%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     +     +       L     N D   G+   
Sbjct: 21  TITELDGQTAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDHAWGEAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ    +  + +       L         I++      
Sbjct: 75  QHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +A  +  E       ++     + +    ++R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGEVARTISAEQKYLMSSLMPVLHSVARGLKFSSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|166711196|ref|ZP_02242403.1| transcriptional regulator AhyR/AsaR family protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 254

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 74/233 (31%), Gaps = 14/233 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L  +   +  +    ++  +    +  +++       +    N   D   +         
Sbjct: 22  LDRVFRDVCALG--FQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVWCEHGYYQH 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P +W    +             +   R         G+  P+ L    
Sbjct: 80  DPVQQRAARRTTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGA 139

Query: 129 NGYVI-----FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181
                       +E L LA   ++      +       EL   +        LT RE  C
Sbjct: 140 FATFSGAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHYIALTRREREC 199

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQ +  G TS+ IA  L  S  TVN +L SA  KL A NR++A+ + + +  +
Sbjct: 200 LQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|313106105|ref|ZP_07792362.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310878864|gb|EFQ37458.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 243

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 4/234 (1%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59
           + ++    +K+++ + +   +     R+      + ++           +L     ++  
Sbjct: 8   LFDSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAE 67

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
                              H      P  W     E   E      VR    L    G+ 
Sbjct: 68  GRSAQERD-AYLLHCPVTRHILELDEPFFWSKSPSEDP-ERMTYRIVRGVRDLGQVNGMQ 125

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178
            PV       G V F  E L L     + A   C  +      L    S+  A+ L+ERE
Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              LQ    G    E+A  L +S  TV  +L +A  +L A +  QA+A+A+R G
Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|27802473|gb|AAO21111.1| BisR [Rhizobium leguminosarum bv. viciae]
          Length = 246

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 72/219 (32%), Gaps = 10/219 (4%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            L   Q          +    A               Y         +      D  +  
Sbjct: 26  ALDEFQQHYPVDFVTFH---LARTIVDSVDAPFVRTTYPDSWVSRYLLNDYINVDPIIRE 82

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--- 136
             S  LP  W+ I    + +S+ Q  V  E   +   G++ P+     ++   I +    
Sbjct: 83  GFSRQLPFDWREID---IPDSAHQFMVDAEMHGIGGNGVSIPIVDKSRRSLLSINSQMSD 139

Query: 137 -EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            E+  +  + + E     + +    +      +     L  RE  CL  A  G  S++IA
Sbjct: 140 EEWTAIERQFLPEWTELGFLLHRKAVFELHGENDPVPALGTREVECLHWASRGKDSKDIA 199

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E LGLS HT   YL SA  KL       AIA A+    I
Sbjct: 200 EILGLSEHTARGYLKSARYKLGCPTLSAAIAHAVHLNLI 238


>gi|209550397|ref|YP_002282314.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536153|gb|ACI56088.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 241

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 77/224 (34%), Gaps = 3/224 (1%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +    +  L  +       +  L    S  D   +   +    +         +    
Sbjct: 20  ARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKP--LLIESSLPAAYIKEFDRAHM 77

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             G  F        +P  W  + +    ++       L       AG+A P      +  
Sbjct: 78  MRGCPFGLRLRESAVPPAWH-LNDAANGQAFPAELRALMLRHAIPAGVAMPTIAANGQRL 136

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
              F  E   L    + E        +  +  + +    A   L+ RE   ++    G T
Sbjct: 137 VFWFCGERAALGQSEVNELAMIILHALDAYNAVKRNEECAHNALSTRELEVVRWTAQGKT 196

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S EI + L LS HTVNAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 197 SIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240


>gi|218892898|ref|YP_002441767.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218773126|emb|CAW28938.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 243

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 4/234 (1%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59
           + ++    +K+++ + +   +     R+      + ++           +L     ++  
Sbjct: 8   LFDSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAE 67

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
                              H      P  W     E   E      VR    L    G+ 
Sbjct: 68  GRSAQ-QRDAYLLHCPVTRHILELDEPFFWSKSPSEDP-ERMTYRIVRGVRDLGQVNGMQ 125

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178
            PV       G V F  E L L     + A   C  +      L    S+  A+ L+ERE
Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              LQ    G    E+A  L +S  TV  +L +A  +L A +  QA+A+A+R G
Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|218515768|ref|ZP_03512608.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 234

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 8/226 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
            ++ +  +    L          NFAL  I+ A   P  ++ +   +  +   G     L
Sbjct: 16  SRAINRTDFFRLLKAAAQHYHFDNFALARISEA-SAPFGERDVVITNVPERRVGLFIATL 74

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
            E  G+           P+       E     S +L      G+  F     P+     +
Sbjct: 75  REALGNVRAKSAQFLATPV--HGRSAEPAAYPSDRLFNEFRSGVFLF----IPLFTPEGR 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              ++ +          I +      ++     E        +  LT+RE   ++   +G
Sbjct: 129 RYCLVLSGVREEPDQGEIADMLLDAMRIFDKLYE-EILTHEMSGRLTQREADIVKWTSEG 187

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TS EIA  LGLS HTVN+++ +A  KLDAVNR+  +A A+R G +
Sbjct: 188 KTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|294012984|ref|YP_003546444.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292676314|dbj|BAI97832.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 248

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 6/219 (2%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +  +  ++   + +I  ++    F  + +   +D       +  +HNY     D      
Sbjct: 9   QVRTRDDMGSVMRVIAEQL---GFQYFALTQHVDVVAAGSGVIHIHNYPDRWADFYAANA 65

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D      +       W  +     + S     +          G   P  +G    
Sbjct: 66  LGITDPVHRACHMTSWGFRWTQMPTLIPLTSGDHRHLARGRQAGIGDGFTIPSNIGGQPP 125

Query: 130 GYVIFTSE-FLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAG 186
           G   F +E    L  + ++ A             L    +R+  A  +T+R+  C+Q A 
Sbjct: 126 GSCTFANEGDRPLREDRLLLAQLLGNYAFDAARRLWSMPRRAMTAPLITDRQRDCVQWAA 185

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            G +  E ++ L +S  TV +++  A  +     RI  +
Sbjct: 186 RGKSDWETSQILDISRETVTSHIKDACARYQVNKRILLV 224


>gi|271498689|ref|YP_003331714.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342244|gb|ACZ75009.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586]
          Length = 250

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 20/232 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   L+          +A   +N           +  + NY  +  +I       + D  
Sbjct: 15  IQNYLNRKLKSYGDLKYAYLIMNKKKPTD-----VVIISNYPSEWVEIYRNNNYQHIDPV 69

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    + + P  W      +      ++   L        G  F +    +    + F  
Sbjct: 70  ILTAINRISPFSWDDDLVISSKLKFSRIFN-LSKEYDIVNGYTFVLHDPANNLATLSFMF 128

Query: 137 EF-LMLANEVIIE-----AHGACYQVITDFLELFKKRS-------SAARNL-TERETSCL 182
           E       E I++                   L+++ S       S   NL ++RE   L
Sbjct: 129 EENRSGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNRNNSKSQEPNLFSQRENEIL 188

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T +EIA  LG++  TV  ++G+   KL  +N   AI   +    I
Sbjct: 189 YWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|222080291|ref|YP_002540155.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221738936|gb|ACM39715.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 230

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  I +      +A   I          + I  + NY  +   +         D  
Sbjct: 17  LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHPEWQSVYFDKKFDALDPV 68

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W    E   +    +            +GI  P++            S
Sbjct: 69  VKRARSRKHIFTWSGEHERPTLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 128

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           E  ++  +  I+A  A   +      +   R++        L  +E + L+    G T E
Sbjct: 129 EKPVIDLDREIDAVAAAGTIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTME 188

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+  G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 189 EIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRRLI 230


>gi|10955045|ref|NP_059701.1| hypothetical protein pTi_029 [Agrobacterium tumefaciens]
 gi|6094514|sp|P33905|TRAR_AGRTU RecName: Full=Transcriptional activator protein traR
 gi|3377775|gb|AAC28121.1| traR [Agrobacterium tumefaciens]
 gi|81176493|gb|ABB59515.1| TraR [Agrobacterium tumefaciens]
          Length = 234

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  I +      +A   I          + I  + NY                D  
Sbjct: 21  LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHRQWQSTYFDKKFEALDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W    E   +    +            +GI  P++            S
Sbjct: 73  VKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           +  ++  +  I+A  A   +      +   R++        L  +E + L+    G T E
Sbjct: 133 DKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+  G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234


>gi|89068113|ref|ZP_01155530.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola
           granulosus HTCC2516]
 gi|89046352|gb|EAR52409.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola
           granulosus HTCC2516]
          Length = 228

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 15/217 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +++R++ R+   + + +  +             Y        +       D  +      
Sbjct: 1   MRDRLRVRHCVYHWLRAEGEE-------YRCGTYSKHWRRRYDRRCYRRIDPVVIDGFRR 53

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
             P+ W+ +        + +         +   G + P+R    +      T      A 
Sbjct: 54  FDPVDWKELDWSGKAARAYR--RDALDHGVGSQGFSIPLRGPNGQFALFSVTDTTSDAAW 111

Query: 144 EVI-----IEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                    +     + +    LEL      + +R+L+ RE   L     GY    +A+ 
Sbjct: 112 AEFTAARQPDLILVGHYLNRKALELAGPTLPAPSRSLSPREIEALTYLAQGYGRGRVADV 171

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S HT+ AY+ SA  KL A N   A+A+A   G I
Sbjct: 172 LSISEHTLRAYIESARFKLGAANTTHAVARAAMEGLI 208


>gi|241518233|ref|YP_002978861.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862646|gb|ACS60310.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 236

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 76/229 (33%), Gaps = 12/229 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
            +++   L   L  +        FA   +++A  F         +  Y  +   +     
Sbjct: 16  AAANEHSLKTALSDVARAHGFERFAYLNLHTAKSFA--------VSTYQKEWQSLYFSRS 67

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  +           W +  E    +   +            +G++ P+  GF + 
Sbjct: 68  YMAIDPVVTAAKRLRRAFRWSADFERRRADDGIKEFYDTAAEFGIRSGLSIPIWTGFGQF 127

Query: 130 GYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLA 185
             +   S   L  +    ++  GA          L    +   R     ++RE  CL+ A
Sbjct: 128 AILTLASARHLETSGPDDLDTVGAAGAAALIHARLQGTTTPTQRPDFIFSDREALCLRWA 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G     IA+  GL+ HTV   L     KL    + QA+A A RFG I
Sbjct: 188 AEGLPMHSIADVTGLTYHTVRWDLDRVKAKLGVYTQKQAVAVASRFGLI 236


>gi|190892823|ref|YP_001979365.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190698102|gb|ACE92187.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
 gi|327189482|gb|EGE56638.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 241

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 77/214 (35%), Gaps = 2/214 (0%)

Query: 22  HLIQNRIKARNFALYTI-NSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
             +     A   A  T+ ++        + +    +         +      G  F    
Sbjct: 28  QALGRVATAFGLAHATLMHAPSPEDLLLKPLLIESSLPAAYVRDFDRANMMRGCPFGLRL 87

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
               +P+ W  + +    ++       L       AG+A P      +     F  E   
Sbjct: 88  RESAVPLAWH-LNDVVNGQAFPAELRALMLHHAIPAGVAMPTIAVDGRRLVFWFCGERAA 146

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L    + E        +  +  + +   SA   L+ RE   ++    G TS EI + L L
Sbjct: 147 LGQSEVNELAIIILHALDAYNTVRRNEESAHNALSARELEVVRWTAQGKTSIEIGQILTL 206

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S HTVNAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 207 SDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240


>gi|86358681|ref|YP_470573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282783|gb|ABC91846.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 241

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 2/214 (0%)

Query: 22  HLIQNRIKARNFALYTI-NSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
             +     A   +  T+ ++        + +    +         +      G  F    
Sbjct: 28  QGLGRVSAAFGLSYATLMHAPSPEDLLLKPLLIESSLPAAYVRDFDRANMMRGCPFGVRL 87

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
               +P+ W  + +    ++       L       AG+A P      +     F  E   
Sbjct: 88  RESAVPLAWH-LDDTVNGQAFPAELRALMLRHAIPAGVAMPTIAVDGRRLVFWFCGERAA 146

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L    + E        +  +  + +   +A   L+ RE   ++    G TS EI + L L
Sbjct: 147 LGQSEVNELAIVILHTLDAYNAVRRNEENAHSALSARELEVVRWTAQGKTSIEIGQILTL 206

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S HTVNAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 207 SDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240


>gi|15596333|ref|NP_249827.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100589|ref|ZP_01364507.1| hypothetical protein PaerPA_01001614 [Pseudomonas aeruginosa PACS2]
 gi|254239506|ref|ZP_04932828.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192]
 gi|9947056|gb|AAG04525.1|AE004543_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126192884|gb|EAZ56947.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192]
          Length = 243

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 81/234 (34%), Gaps = 4/234 (1%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59
           + ++    +K+++ + +   +     R+      + ++    D      +L     ++  
Sbjct: 8   LFDSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPDEDELIDELFFVHGDWAE 67

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
                              H      P  W     E   E      VR    L    G+ 
Sbjct: 68  GRSAQERD-AYLLHCPVTRHILELDEPFFWSKSPSEDP-ERMTYRIVRGVRDLGQVNGMQ 125

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178
            PV       G V F  E L L     + A   C  +      L    S+  A+ L+ERE
Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              LQ    G    E+A  L +S  TV  +L +A  +L A +  QA+A+A+R G
Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|238786137|ref|ZP_04630091.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
 gi|238712965|gb|EEQ05023.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
          Length = 245

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 66/236 (27%), Gaps = 22/236 (9%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +++   +           ++   +N              + NY LD             D
Sbjct: 13  EDIKNYIQRRIKAYGDLRYSYLVMNKKTPL-----HPAIISNYPLDWIKEYKKNSYHLID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +      + P  W         +S+      L        G  F +    H    +  
Sbjct: 68  PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFNLAREYNIINGYTFVLHDNNHNMATLNI 126

Query: 135 T-SEFLMLANEVIIEA-----HGACYQVITDFLELFK----------KRSSAARNLTERE 178
           +      +  +  IE                 L L++          + ++     + RE
Sbjct: 127 SNGNDDSIYFDESIEINKEKIQMLLILTHDKMLGLYQKNNNENKELGRSAAEREIFSPRE 186

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L  A  G T  EIA  LG+   TV  ++G+   KL  +N   AI   I    I
Sbjct: 187 NEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242


>gi|296161870|ref|ZP_06844671.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295887889|gb|EFG67706.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 262

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 70/231 (30%), Gaps = 9/231 (3%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDSGDIP 65
           + +   ++   +    +      F  Y I+    S     RR  L      Y  +     
Sbjct: 33  RLACATDIPSLVESFGHAAGKLGFPHYVISRVTRSRSTCARRTALEMIGARYPQEWVRHY 92

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   D           P  W  I     +  + +  +         AG++ P+   
Sbjct: 93  QHRDYASTDPVHRAAFLQSAPYRWHDI---IGLSKAERRLLDEAREAGLPAGLSVPLHQS 149

Query: 126 FHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQ 183
                    +     +        A+    Q   +   L    S  AA  LT R+  CL 
Sbjct: 150 DGSILLFNLSGPLHSVNDAINSRLAYLISAQFHFELHRLASMPSRRAAHLLTARQLECLT 209

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G TS EI E LG S +TV+ ++  A   L+  +R  A   A   G I
Sbjct: 210 WVARGKTSAEIGEILGRSHYTVDYHIKEAMEALNIRSRTAAAVHATVHGII 260


>gi|58580891|ref|YP_199907.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425485|gb|AAW74522.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 277

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 14/233 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L  +   +  +    ++  +    +  +++       +    N   D   +         
Sbjct: 45  LDRVFRDVCALG--FQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVWCEHGYYQH 102

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P +W    +             +   R         G+  P+ L    
Sbjct: 103 DPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGA 162

Query: 129 NGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181
                   +      L LA   ++      +       EL   +        LT RE  C
Sbjct: 163 FATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHHIPLTRREREC 222

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQ +  G TS+ IA  L  S  TVN +L SA  KL A NR++A+ + + +  +
Sbjct: 223 LQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 275


>gi|218506954|ref|ZP_03504832.1| transcriptional activator protein [Rhizobium etli Brasil 5]
          Length = 179

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 8/181 (4%)

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
           +  +          D  +     G LP+ W +   ++    +           +   G+ 
Sbjct: 1   EWVEQYRDRDYFSIDPVVRLGRRGFLPVEWSASGWDS--GRAYGFFKEAMAFGVGRQGVT 58

Query: 120 FPVRLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFK-KRSSAARN 173
            PVR    +      TS            + + +     + +    + L   ++ +    
Sbjct: 59  LPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSGMRKVADLPR 118

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE  CL++  +G  +++I  +L +SV  V  YL SA  KL      +A+A+A     
Sbjct: 119 LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALEL 178

Query: 234 I 234
           I
Sbjct: 179 I 179


>gi|289664500|ref|ZP_06486081.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 267

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 76/243 (31%), Gaps = 17/243 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSGD 63
           +   +LQ L+  L  +   + A  F         +  +++       +    N   D   
Sbjct: 23  RDLQALQTLNRCLDRVFRDVSALGFQSLVYDYAPVPLSIEGALITPTVFMQRNAPGDMQH 82

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ-----LSVRLEGGLLPFAGI 118
           +         D           P +W    +                 R         G 
Sbjct: 83  VWCAHGYYQHDPVQQRATRRTTPFVWSYHTDGNCAGVEYVGGQHWQVTRYLCDSGMGTGA 142

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAA 171
             P+ L            + +      + EA           +Q     L   ++R    
Sbjct: 143 TVPLHLPGGAFATFSGAIDTVDAEAPHLAEAQLLPFLLLAHAFQARAQELLDPQERRCHH 202

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE  CLQ +  G TS+ IA  L  S  TVN +L SA  KL A NR++A+ + + +
Sbjct: 203 IALTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 262

Query: 232 GYI 234
             +
Sbjct: 263 RLL 265


>gi|30575828|gb|AAP32919.1| CviR [Chromobacterium violaceum]
          Length = 233

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 65/221 (29%), Gaps = 31/221 (14%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
             +  EL   L  + ++  +    L           ++       +Y  D  D       
Sbjct: 34  IETENELKAFLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPSDWLDQYMKENY 93

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  L   + G  P++W+         +  +  +         +GI F      +  G
Sbjct: 94  AQHDPILR-IHLGQGPVMWEERFNRAK-GAEEKRFIAEATQNGMGSGITFSAASERNNIG 151

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            ++  +                              R      L++RE         G T
Sbjct: 152 SILSIA-----------------------------GREPGNMPLSQREYDIFHWMSRGKT 182

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + EIA  L +S  TV  ++ +   KL+A NR  AI   +  
Sbjct: 183 NWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMHL 223


>gi|254234270|ref|ZP_04927593.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719]
 gi|126166201|gb|EAZ51712.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719]
          Length = 243

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 81/234 (34%), Gaps = 4/234 (1%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59
           + ++    +K+++ + +   +     R+      + ++    D      +L     ++  
Sbjct: 8   LFDSVARLRKAATTEAVCREMVEFSARLGFDRVIVCSLFPRPDEDELIDELFFVHGDWAE 67

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
                              H      P  W     E   E      VR    L    G+ 
Sbjct: 68  GRSAQ-QRDAYLLHCPVTRHILELDEPFFWSKSPSEDP-ERMTYRIVRGVRDLGQVNGMQ 125

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178
            PV       G V F  E L L     + A   C  +      L    S+  A+ L+ERE
Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERE 185

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              LQ    G    E+A  L +S  TV  +L +A  +L A +  QA+A+A+R G
Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|296390495|ref|ZP_06879970.1| transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 243

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 4/234 (1%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDL 59
           + ++    +K+++ + +   +     R+      + ++           +L     ++  
Sbjct: 8   LFDSVARLRKAATTEAVCREMVEFAVRLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAE 67

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
                              H      P  W     E     + ++   +   L    G+ 
Sbjct: 68  GRSAQERD-AYLLHCPVTRHILELDEPFFWSKSPSEDPARMAYRIVRGVR-DLGQVNGMQ 125

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178
            PV       G V F  E L L     + A   C  +      L    SS  A+ L+ERE
Sbjct: 126 VPVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSSGDAQALSERE 185

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              LQ    G    E+A  L +S  TV  +L +A  +L A +  QA+A+A+R G
Sbjct: 186 REVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|295095488|emb|CBK84578.1| transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 173

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 10/178 (5%)

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                       D  L          I   +     + +  Q             GI   
Sbjct: 1   MAQYQSENYFAIDPVLK-----PENFIQGHLPWTDELFTDAQQLWDGARDHGLRKGITQC 55

Query: 122 VRLGFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTE 176
           + +  H  G++  +        + + EV +         +T  L    +         ++
Sbjct: 56  LMMPNHALGFLSVSCTSLQAHSISSEEVELRLQMLVQMALTTLLRFEHETVMPPEMKFSK 115

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+   +G TS EIA  L +S +TVN +  +   K +A N+IQ    A   G I
Sbjct: 116 REREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKIQIACYAAATGLI 173


>gi|148265144|ref|YP_001231850.1| regulatory protein, LuxR [Geobacter uraniireducens Rf4]
 gi|146398644|gb|ABQ27277.1| transcriptional regulator, LuxR family [Geobacter uraniireducens
           Rf4]
          Length = 250

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 6/212 (2%)

Query: 25  QNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGL 84
           ++ I   + A+Y +                 +Y  +  D          D          
Sbjct: 40  RDLIGFDH-AVYGLAKLNHHGCITAYETLNFSYPAEWLDAYRTNNFHLLDPITTENFKNY 98

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144
               W+       +E+     +          G A  +   F   G +   S  +     
Sbjct: 99  SLQYWKDTFNTYDVEAK---FLSAALDFRLVDGYAIGITNSFRTEGCIFSISGPIKKEPR 155

Query: 145 VIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
             +  +     +   F ++   +K+   +  +T RE   L     G +S +I+  L +S 
Sbjct: 156 NELVLNLLAPHLHQAFRQVLSVEKKGKISTTITIREREVLNWIKKGKSSWDISTILAISE 215

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  ++ +   KLDAV+RI A+A A+  G I
Sbjct: 216 RTVKFHVDNVMRKLDAVSRIHAVAVALSVGLI 247


>gi|66767622|ref|YP_242384.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|66572954|gb|AAY48364.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 254

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 76/244 (31%), Gaps = 17/244 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62
           G+   + + L+  L  +   + A  F         +  +++       +    N   D  
Sbjct: 9   GRDLQARETLNACLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPSVFLQRNAPDDMH 68

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-----IESSGQLSVRLEGGLLPFAG 117
           ++         D           P +W    E        +    +   R         G
Sbjct: 69  NVWCEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGVEYVGDQHRQVTRYLCDSDMGTG 128

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAAR 172
           +  P+ L                     + EA         +       EL   +     
Sbjct: 129 VTVPLHLPGGAFATFSAAVNVTQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRCH 188

Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE  CLQ +  G T++ IA  L  S  TVN +L SA  KL A NR++A+ + + 
Sbjct: 189 HIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMH 248

Query: 231 FGYI 234
           +  +
Sbjct: 249 YRLL 252


>gi|332162143|ref|YP_004298720.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|1723596|sp|P54295|YENR_YEREN RecName: Full=Transcriptional activator protein yenR
 gi|773400|emb|CAA53694.1| yenR [Yersinia enterocolitica]
 gi|318606195|emb|CBY27693.1| quorum-sensing transcriptional activator YpeR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666373|gb|ADZ43017.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330864049|emb|CBX74127.1| transcriptional activator protein yenR [Yersinia enterocolitica
           W22703]
          Length = 244

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 67/235 (28%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +++   +           ++   +N              + NY LD             D
Sbjct: 13  EDIKNYIQRRIKTYGDLCYSYLVMNKKTPL-----HPTIISNYPLDWVKKYKKNSYHLID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +      + P  W         +S+     +L        G  F +    +    +  
Sbjct: 68  PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNI 126

Query: 135 T-SEFLMLANEVIIEA-----HGACYQVITDFLEL-------FKKRSSAARN--LTERET 179
           +      ++ +  IE                 L L        + R++       + RE 
Sbjct: 127 SNGSDDSISFDERIEINKEKIQMLLIITHEKMLGLYQSNSDKNENRNTQIERDIFSPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EI+  LG+   TV  ++G+   KL  +N   AI   I    I
Sbjct: 187 EILYWASVGKTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|85059718|ref|YP_455420.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
 gi|84780238|dbj|BAE75015.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
          Length = 240

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 62/214 (28%), Gaps = 22/214 (10%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           FA + +N     P        + +Y     +          D  +        P  W++ 
Sbjct: 36  FAYFMMNKDDGQPA-----FMISDYPAGWLNQYRNYGYQKIDPVMLIACRKFTPFSWKNN 90

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS------------EFLM 140
                 ++  ++S           G  F +    +    +  +             +   
Sbjct: 91  PN-MPDQNFYKMSSDYALDN----GYTFTLHDPDNNLATLTISQMKQNAVFYDIIEKEKD 145

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
               ++I  H    +      E   +       L+ RE   L  A  G T  EI+  L +
Sbjct: 146 KFQMLLITTHEKVIRFFDARKEQGSESEEEPCRLSPREKEVLFWASVGKTYNEISTILSI 205

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              TV  ++ +   KL   N   AI +A+    +
Sbjct: 206 REGTVKFHIRNIINKLGVANAKHAITRAMELKLL 239


>gi|241205786|ref|YP_002976882.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859676|gb|ACS57343.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 241

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 78/224 (34%), Gaps = 3/224 (1%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +    +  L  +       +  L    S  D   +   +    +  +      +    
Sbjct: 20  ARTRSLFAQALGRVSTAFGLSHATLMHAPSPEDLLLKP--LLIESSLPVAYVRDFDRAHM 77

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             G  F        +P  W  + + +  ++       L       AG+A P      +  
Sbjct: 78  MRGCPFGVRLRQSAVPPAWH-LNDASNGQAFPAELRALMLRHAIPAGVAMPTIAADGQRL 136

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
              F  E   L      E        +  +  + +    A   L+ RE   ++    G T
Sbjct: 137 VFWFCGERAALGQSETNELAMIILHALDAYNAVKRNEECAHNALSTRELEVVRWTAQGKT 196

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S EI + L LS HTVNAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 197 SIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240


>gi|218506239|ref|ZP_03504117.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli Brasil 5]
          Length = 215

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 67/198 (33%), Gaps = 12/198 (6%)

Query: 49  QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQ 103
             + +L N   D  D          D           P  W    +   +          
Sbjct: 10  PSLLKLRNISDDMHDYWFDRGYFRIDPVQQVALRTSAPFFWNYDPDADTLIKGFMSEDTA 69

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVIT 158
              R         G+  PV +       V           E      I + +   +    
Sbjct: 70  PVTRYLSERDMSTGVTVPVHMPRGDYATVTGIRFGRNNDFERHALRYIADFNLIAHVFHE 129

Query: 159 DFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
               LF +  RS     LTERE  CL+ + +GY+++EI+  +  SV TV  +L +A  KL
Sbjct: 130 AAYSLFDRKARSVGTVRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKL 189

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A NR QA+ +A  +  +
Sbjct: 190 GARNRTQAVVRATHYRLL 207


>gi|238791898|ref|ZP_04635535.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
 gi|238729002|gb|EEQ20519.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
          Length = 245

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 22/236 (9%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +++   +           ++   +N              + NY +D             D
Sbjct: 13  EDIKNYIQRRIKAYGDLRYSYLVMNKKTPL-----HPTIISNYPMDWVQTYKRNNYHLID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +      + P  W        I+S+      L        G  F +    +    +  
Sbjct: 68  PVILTAKDKVAPFAWDDNSV-INIKSTDSAVFNLAREYNIINGYTFVLHDNNNNMATLNI 126

Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL----------TERE 178
           +      ++ +  IE                 L L+ K ++    L          + RE
Sbjct: 127 SNGSDDSISFDESIETNKEKIQMLLILTHDKMLGLYHKNNNKNNELNGVGGEREIFSPRE 186

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L  A  G T  E++  LG+   TV  ++G+   KL  +N   AI   I    I
Sbjct: 187 NEILYWASVGKTYSEVSIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242


>gi|217979469|ref|YP_002363616.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
 gi|217504845|gb|ACK52254.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
          Length = 238

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 12/225 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L L+       +      +              +        D   I      D  
Sbjct: 18  LEELLELVCRSYDLFSVIYICPSFIG---FSLSAPFIVQPPCRGWADQQKIQSLLSTDPM 74

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +   +  +LP+ W ++++++  E+        +G      G+  PVR   +    +   +
Sbjct: 75  VRAMSRTVLPMDWAALRQKSAHETGIHFLPGEDGA--LRQGLTIPVRGPSNSVWGLFIAT 132

Query: 137 EFLM------LANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGY 189
                       +E++I+     + V     ++  +  +     +T RE   L L   G 
Sbjct: 133 SNESEICWASRRHELMIDLAHIAHYVHKRACDIHGEGHTIDLSTITRREIEALALVAQGK 192

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              EIA  + +S  TV A+L SA  KL A+NR+ A AKA+R G I
Sbjct: 193 KPGEIAMLMRISNDTVKAHLDSARDKLQALNRVHAAAKALRAGLI 237


>gi|325271203|ref|ZP_08137751.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324103661|gb|EGC00960.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 235

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 62/214 (28%), Gaps = 10/214 (4%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
           +  +        +N  +    +   +    NY  +             D      +   L
Sbjct: 27  HLAQDLAMQYLGLNLRIQIATQTPRLYLYSNYPDEWISRYQRDDFYKQDCAAHLSHQSTL 86

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145
           P++W                           G    +    H    +        +    
Sbjct: 87  PVLWTDELYHEAP-----HFREAACQHGLRHGWTQSLHDLQHNESQISVARPAGSIDINE 141

Query: 146 IIE----AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           + E        C+ +     E            ++ RE   L+ +  G T+ ++A  L L
Sbjct: 142 LYEKAGSVQWLCHTLHAVLGEHHLNALCPPQPKMSARELEVLKWSAAGKTAADVACILSL 201

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TVN ++ S   K +A N+  AIA A   G+I
Sbjct: 202 SQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|222055510|ref|YP_002537872.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
 gi|221564799|gb|ACM20771.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
          Length = 248

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 75/219 (34%), Gaps = 5/219 (2%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   +  + + +   N A++ I         Q       +Y  +             D  
Sbjct: 31  IKNIVDSLSSLVAIDN-AVFGIAQIGTNGLIQTYDVMNISYPEEWLITYKRKNFCQVDPI 89

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
                S      W   ++     +  +  +        + GIA  VR      G +   +
Sbjct: 90  AKENFSNFELQFW---EDTYKKWNPPKEFISAARDFNLYNGIACGVRNLKSTEGSLFSVA 146

Query: 137 EFLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
             L                + T F   L K ++     L++RE   L     G +S +I+
Sbjct: 147 GKLENHPREKFIIENLTPHLHTAFTTYLSKTKAPVNFELSKREIEVLNWVKKGKSSWDIS 206

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L +SV TV  ++ +  VKL+AV+R  A+A A+  G I
Sbjct: 207 VILAISVRTVKFHVENIMVKLNAVSRTHAVAIALSAGVI 245


>gi|269139938|ref|YP_003296639.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202]
 gi|53147449|dbj|BAD52106.1| AHL-dependent transcriptional regulator [Edwardsiella tarda]
 gi|255529368|gb|ACU12619.1| AHL-dependent transcriptional regulator [Edwardsiella tarda]
 gi|267985599|gb|ACY85428.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202]
 gi|304559773|gb|ADM42437.1| EdwR [Edwardsiella tarda FL6-60]
          Length = 239

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 17/230 (7%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           E+   +           FA   +N      +    I  + NY  +   +       + D 
Sbjct: 11  EIKQFIDRSLVAYGHTQFAYLLLNK-----KNPSDIIIISNYPDEWVTLYKEHHYQHIDP 65

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +      + P +W         + +      L        G  F +    ++   +   
Sbjct: 66  VVISALRRVSPFLWDEKI-TVNSKLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAMLSLM 124

Query: 136 SEFLMLA---------NEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
            +   LA           ++I+AH      Q          K+       + RE   L  
Sbjct: 125 VDDRGLAEIERSRGVLQMLLIDAHERFMNGQRHITAQHYCSKKEPIENIFSTRENEILYW 184

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G T +EIA  LG+   TV  ++G+   KL  +N   AI   +    I
Sbjct: 185 ASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 234


>gi|91780463|ref|YP_555670.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693123|gb|ABE36320.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 262

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 70/232 (30%), Gaps = 9/232 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDSGDI 64
           K+ +   ++   +    +      F  Y I+    S      +  L     +Y  +    
Sbjct: 32  KRLACATDIPSLVESFGHAAGKLGFPHYVISRVTRSRSTRAPQTALEMIGSHYPKEWVQH 91

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D           P  W  I + T  +      +         AG++ PV  
Sbjct: 92  YQRRDYALTDPVHRAAFFQSAPYRWHDIIDLTKADHR---FLGEASEAGLPAGLSIPVHQ 148

Query: 125 GFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCL 182
                           + +E+    A     Q   +   L    S  A  L T  +  CL
Sbjct: 149 SDGSVLLFNLAGPLHSVNSEINARRACLMSAQFNFELHRLGLIHSRRAARLLTPCQIVCL 208

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                G TS EI E LG S +TV+ ++  A   L+   R  A  +A   G I
Sbjct: 209 TWVARGKTSAEIGEILGCSHYTVDYHVKKAMEALNIWGRTAAAVQATVQGLI 260


>gi|307133126|ref|YP_003885142.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya
           dadantii 3937]
 gi|313104103|sp|Q47188|EXPR_DICD3 RecName: Full=Transcriptional activator protein expR
 gi|306530655|gb|ADN00586.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya
           dadantii 3937]
          Length = 250

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 15/199 (7%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            +  + NY  +  DI       + D  +    + + P  W      +      ++   L 
Sbjct: 43  DVVIISNYPTEWVDIYRNNNYQHIDPVILTAINKISPFSWDDDLVISSKLKFSRIFN-LS 101

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF-------------TSEFLMLANEVIIEAHGACYQV 156
                  G  F +    +    + F                       ++I AH     +
Sbjct: 102 KDYDIVNGYTFVLHDPGNNLAALSFMIEEHRSEELEEIIQNNKDKLQMLLISAHEKLTSL 161

Query: 157 ITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
             +        +S  A   ++RE   L  A  G T +EIA  LG++  TV  ++G+   K
Sbjct: 162 YREMSRNRNNSKSQEADLFSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKK 221

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L  +N   AI   +    I
Sbjct: 222 LGVLNAKHAIRLGVEMNLI 240


>gi|227822236|ref|YP_002826207.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii
           NGR234]
 gi|227341236|gb|ACP25454.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii
           NGR234]
          Length = 244

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 14/239 (5%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
           + L   +     +      L++      +          +  +  +L    H +   + +
Sbjct: 9   DLLDIVEYRGCADPQQFFALMRRTFDIAHLLYLEAEPTAEGLKVCRL---HHTFGAYAEE 65

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPV 122
           +         D  L     G+ P+ W + +         +        +     G+A P+
Sbjct: 66  LYLSRGLHRIDPILRLALGGVRPVEWATARRR---FPECEPLYEAAEDIGLSTEGVALPL 122

Query: 123 RLGFHKNGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLE--LFKKRSSAARNLT 175
                +   +  ++              + +   A        LE  +          LT
Sbjct: 123 PSPAGRMALLAISANMSPPEWAEYRRCHLRDFQLAANLFHASMLEQAMADAIDDRDTRLT 182

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RET  L  +  G +  EIA  LG+S  TV  ++ +A  KL+ V+  QA+A+A+R   I
Sbjct: 183 SRETEVLTWSAAGKSYWEIATILGISERTVRFFMSNARRKLNVVSNTQAVAQAVRHALI 241


>gi|84622824|ref|YP_450196.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578132|ref|YP_001915061.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84366764|dbj|BAE67922.1| transcriptional regulator ahyR/asaR family [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522584|gb|ACD60529.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 254

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 14/233 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L  +   +  +    ++  +    +  +++       +    N   D   +         
Sbjct: 22  LDRVFRDVCALG--FQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVWCEHGYYQH 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P +W    +             +   R         G+  P+ L    
Sbjct: 80  DPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGA 139

Query: 129 NGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181
                   +      L LA   ++      +       EL   +        LT RE  C
Sbjct: 140 FATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHHIPLTRREREC 199

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQ +  G TS+ IA  L  S  TVN +L SA  KL A NR++A+ + + +  +
Sbjct: 200 LQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|188990738|ref|YP_001902748.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732498|emb|CAP50692.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris]
          Length = 272

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 76/248 (30%), Gaps = 21/248 (8%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62
           G+   + + L+  L  +   + A  F         +  +++       +    N   D  
Sbjct: 23  GRDLQARETLNACLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPSVFLQRNAPDDMH 82

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV---------IESSGQLSVRLEGGLL 113
           ++         D           P +W    E            +    +   R      
Sbjct: 83  NVWCEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGRTEGVEYVGHQHRQVTRYLCDSD 142

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRS 168
              G+  P+ L                     + EA         +       EL   + 
Sbjct: 143 MGTGVTVPLHLPGGAFATFSAAVNATQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQE 202

Query: 169 SAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                  LT RE  CLQ +  G T++ IA  L  S  TVN +L SA  KL A NR++A+ 
Sbjct: 203 RRCHHIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVV 262

Query: 227 KAIRFGYI 234
           + + +  +
Sbjct: 263 RGMHYRLL 270


>gi|21243715|ref|NP_643297.1| AhyR/AsaR family transcriptional regulator [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21109298|gb|AAM37833.1| transcriptional regulator ahyR/asaR family [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 254

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 67/214 (31%), Gaps = 12/214 (5%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           +    +  +L+       +    N   D   +         D           P +W   
Sbjct: 39  YDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98

Query: 93  QEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
            +             +   R         G+  P+ L            +        + 
Sbjct: 99  TDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLA 158

Query: 148 EAHGA-----CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200
           EA         +   +   EL   +        LT RE  CLQ +  G TS+ IA  L  
Sbjct: 159 EAQLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNR 218

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TVN +L SA  KL A NR++A+A+ + +  +
Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVARGMHYRLL 252


>gi|293491180|gb|ADE45144.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 12/214 (5%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           +    +  +L+       +    N   D   +         D           P +W   
Sbjct: 39  YDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98

Query: 93  QEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
            +             +   R         G+  P+ L            +        + 
Sbjct: 99  TDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLA 158

Query: 148 EAHGA-----CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200
           EA         +   +   EL   +        LT RE  CLQ +  G TS+ IA  L  
Sbjct: 159 EAQLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNR 218

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TVN +L SA  KL A NR++A+ + + +  +
Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|21232249|ref|NP_638166.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|21114010|gb|AAM42090.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 258

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 77/248 (31%), Gaps = 21/248 (8%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNF-----ALYTINSALDFPRRQQLICELHNYDLDSG 62
           G+   + + L+  L  +   + A+ F         +  +++       +    N   D  
Sbjct: 9   GRDLQARETLNACLDRVFRDVCAQGFQSLVYDYAPVPLSMEGALITPSVFLQRNAPDDMH 68

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV---------IESSGQLSVRLEGGLL 113
           ++         D           P +W    E            +    +   R      
Sbjct: 69  NVWCEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGRTEGVEYVGDQHRQVTRYLCDSD 128

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRS 168
              G+  P+ L                     + EA         +       EL   + 
Sbjct: 129 MGTGVTVPLHLPGGAFATFSAAVNATQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQE 188

Query: 169 SAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                  LT RE  CLQ +  G T++ IA  L  S  TVN +L SA  KL A NR++A+ 
Sbjct: 189 RRCHHIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVV 248

Query: 227 KAIRFGYI 234
           + + +  +
Sbjct: 249 RGMHYRLL 256


>gi|40804409|gb|AAR91700.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae]
          Length = 254

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 14/233 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L  +   +  +    ++  +    +  +++       +    N   D   +         
Sbjct: 22  LDRVFRDVCALG--FQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVWCEHGYYQH 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           D           P +W    +             +   R         G+  P+ L    
Sbjct: 80  DPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGA 139

Query: 129 NGYVIFTSEF-----LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSC 181
                   +      L LA   ++      +       EL   +        LT RE  C
Sbjct: 140 FATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHHIPLTRREREC 199

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQ +  G TS+ IA  L  S  TVN +L SA  KL A NR++A+ + + +  +
Sbjct: 200 LQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|22125626|ref|NP_669049.1| transcriptional activator protein [Yersinia pestis KIM 10]
 gi|45442066|ref|NP_993605.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51596821|ref|YP_071012.1| quorum-sensing transcriptional activator YpeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108807950|ref|YP_651866.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Antiqua]
 gi|108812215|ref|YP_647982.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|145599154|ref|YP_001163230.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides F]
 gi|149365634|ref|ZP_01887669.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CA88-4125]
 gi|153948985|ref|YP_001400524.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162419359|ref|YP_001606210.1| LuxR family transcriptional regulator [Yersinia pestis Angola]
 gi|165927469|ref|ZP_02223301.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939475|ref|ZP_02228021.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008189|ref|ZP_02229087.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214550|ref|ZP_02240585.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402379|ref|ZP_02307842.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422303|ref|ZP_02314056.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167427015|ref|ZP_02318768.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469621|ref|ZP_02334325.1| transcriptional regulator, LuxR family protein [Yersinia pestis
           FV-1]
 gi|170023896|ref|YP_001720401.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186895898|ref|YP_001873010.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929546|ref|YP_002347421.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CO92]
 gi|229837989|ref|ZP_04458148.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895186|ref|ZP_04510361.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides A]
 gi|229898551|ref|ZP_04513696.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902547|ref|ZP_04517664.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|294504217|ref|YP_003568279.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Z176003]
 gi|21958535|gb|AAM85300.1|AE013776_9 putative transcriptional activator protein [Yersinia pestis KIM 10]
 gi|6648672|gb|AAF21289.1| transcriptional activator YpeR [Yersinia pestis]
 gi|45436929|gb|AAS62482.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590103|emb|CAH21738.1| quorum-sensing transcriptional activator YpeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775863|gb|ABG18382.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|108779863|gb|ABG13921.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Antiqua]
 gi|115348157|emb|CAL21085.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CO92]
 gi|145210850|gb|ABP40257.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides F]
 gi|149292047|gb|EDM42121.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CA88-4125]
 gi|152960480|gb|ABS47941.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352174|gb|ABX86122.1| transcriptional regulator, LuxR family [Yersinia pestis Angola]
 gi|165912524|gb|EDR31155.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920524|gb|EDR37801.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992571|gb|EDR44872.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204252|gb|EDR48732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958809|gb|EDR55830.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048212|gb|EDR59620.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167053994|gb|EDR63822.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750430|gb|ACA67948.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186698924|gb|ACC89553.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679994|gb|EEO76093.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|229688099|gb|EEO80170.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694355|gb|EEO84402.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701820|gb|EEO89844.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides A]
 gi|262362334|gb|ACY59055.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           D106004]
 gi|262366357|gb|ACY62914.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           D182038]
 gi|294354676|gb|ADE65017.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Z176003]
 gi|320014713|gb|ADV98284.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 245

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 68/236 (28%), Gaps = 22/236 (9%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +++   +           ++   +N  +           + NY LD             D
Sbjct: 13  EDIKNYIQRRIKAYGNIRYSYLLMNKKVPL-----HPAIISNYPLDWVKKYKKNSYHLID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +      + P  W        I+S+      L        G  F +    +    +  
Sbjct: 68  PVILTAKGKVAPFAWDDNSV-INIKSTDSAVFNLAREYNIVNGYTFVLHDNNNNMATLNV 126

Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL----------TERE 178
           +  +   +  +  IE            +    L L+ K       L          + RE
Sbjct: 127 SSGDDDSIFFDESIEVNKEKIQMLLIFIHDKMLGLYNKSHHENNTLNKKENKREIFSPRE 186

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L  A  G T  EIA  LG+   TV  ++G+   KL  +N   AI   I    I
Sbjct: 187 NEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242


>gi|240142577|ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens
           AM1]
 gi|240012524|gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens
           AM1]
          Length = 296

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           +Q+L   LHL   +    +F+   +N A      + +I  +     D  D          
Sbjct: 54  VQDLGEILHLTATKAGFESFSF--LNGATVASTSESIIMTVS---KDWQDTYFSEGFLDV 108

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFPVRL-GFHKN 129
           D  L    +     +W  I+   V+       + ++          G+  P+ L     +
Sbjct: 109 DPCLMRALTSNSSFMWSDIELPPVVNGKVPGARRTMEAARDHGYVDGLVLPLHLVDTKGS 168

Query: 130 GYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLELFK----------------KRS 168
            Y  F S F      ++ E      H      +    +L                    +
Sbjct: 169 PYNSFCSLFWKEDERLLPEVSRRYGHYLHMLAMLWEQKLQDLSPQLSTGMLGSISVLGNA 228

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            + + L+ RE   L  A  G T+ E A  LGLS+ TVN +LG A  KL A N+  A+A A
Sbjct: 229 RSTKALSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLGKAQKKLMAANKTHAVAIA 288

Query: 229 IRFGYI 234
           I  G I
Sbjct: 289 INRGVI 294


>gi|238795934|ref|ZP_04639446.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238720139|gb|EEQ11943.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 245

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 66/236 (27%), Gaps = 22/236 (9%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +++   +           ++   +N              + NY LD             D
Sbjct: 13  EDIKNYIQRRIKAYGDLRYSYLVMNKKTPL-----HPAIISNYPLDWIKKYKKNSYHLID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +      + P  W         +S+      L        G  F +    +    +  
Sbjct: 68  PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFNLAREYNIINGYTFVLHDNNNNMATLNI 126

Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL----------TERE 178
           +      +  +  IE                 L L++K  +    L          + RE
Sbjct: 127 SNGNDDSIYFDESIEVNKEKIQMLLILTHDKMLGLYQKNINENNELGKVPNGREIFSPRE 186

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L  A  G T  EIA  LG+   TV  ++G+   KL  +N   AI   I    I
Sbjct: 187 NEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242


>gi|330897659|gb|EGH29078.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 240

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     +     +       L     N D   GD   
Sbjct: 21  TITELDGQAAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDDAWGDAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ    +  + +     V           I++      
Sbjct: 75  QHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVTAVYDALVDTCE---LLPAISYGYTNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +   +  E       ++     + +     +R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGEVERSISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|293491176|gb|ADE45142.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 12/214 (5%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           +    +  +L+       +    N   D   +         D           P +W   
Sbjct: 39  YDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98

Query: 93  QEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
            +             +   R         G+  P+ L            +        + 
Sbjct: 99  TDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLA 158

Query: 148 EAHGA-----CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200
           EA         +   +   EL   +        LT RE  CLQ +  G TS+ IA  L  
Sbjct: 159 EAQLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNR 218

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TVN +L SA  KL A NR++A+ + + +  +
Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|238920760|ref|YP_002934275.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri
           93-146]
 gi|238870330|gb|ACR70041.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri
           93-146]
          Length = 239

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 21/232 (9%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           E+   +           FA   +N      +    I  + NY  +   +       + D 
Sbjct: 11  EIKQFIDRSLVAYGHIQFAYLLLNK-----KNPSDIIIISNYPDEWVTLYKEHHYQHIDP 65

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
            +      + P +W    E+  + S   LS    L        G  F +    ++   + 
Sbjct: 66  VVISALRRVSPFLW---DEKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAMLS 122

Query: 134 FTSEFLMLA---------NEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCL 182
              +   LA           ++I+AH      Q           +       + RE   L
Sbjct: 123 LMVDDRGLAEIERNRGVLQMLLIDAHERFINGQRQITAQRHCSNKEPIENIFSTRENEIL 182

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T +EIA  LG+   TV  ++G+   KL  +N   AI   +    I
Sbjct: 183 YWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 234


>gi|238025268|ref|YP_002909500.1| Autoinducer-binding domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237879933|gb|ACR32265.1| Autoinducer-binding domain protein [Burkholderia glumae BGR1]
          Length = 273

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 15/213 (7%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              L  +    +   FA          P        + N+             +  +  +
Sbjct: 55  ESLLDAVLPIARRLGFAYLEYFFNTSLPVSAPRKLVIGNFPPAWSRREGADEVSEANPII 114

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
               S ++P+ W      +  +        +        G +  VR G    G +     
Sbjct: 115 ARCKSSMMPMAWDEASFASHPD-----FRAMLARAGIGGGWSQLVRDGAGNWGVLTVART 169

Query: 138 --------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                    +    +++  AH    ++           +     LTE E + L+   DG 
Sbjct: 170 ACRYAGAMEVEAEAQLLWLAHIVHSRLCQMLRPPMTGANRVL--LTEMEKTILRWTVDGK 227

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           TS E+AE L +S  TVN ++ +   K++  N+ 
Sbjct: 228 TSGELAEILQVSARTVNFHVQNILAKMNTCNKT 260


>gi|2495419|sp|Q46967|ECHR_ERWCH RecName: Full=Transcriptional activator protein echR
 gi|1177878|gb|AAA86840.1| EchR [Erwinia chrysanthemi]
          Length = 250

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 20/232 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   L+          +A   +N           +  + NY  +  +I       + D  
Sbjct: 15  IQNYLNRKLKSYGDLKYAYLIMNKKKPTD-----VVIISNYPSEWVEIYRSNNYQHIDPV 69

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    + + P  W      +      ++   L        G  F +    +    + F  
Sbjct: 70  ILTAINKISPFSWDDDLVISSKLKFSRIFN-LSKEYDIVNGYTFVLHDPGNNLATLSFMF 128

Query: 137 EF-LMLANEVIIE-----AHGACYQVITDFLELFKK--------RSSAARNLTERETSCL 182
           E       E I++                   L+++        +S      ++RE   L
Sbjct: 129 EENRSGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNIFSQRENEIL 188

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T +EIA  LG++  TV  ++G+   KL  +N   AI   +    I
Sbjct: 189 YWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|238754417|ref|ZP_04615773.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC
           29473]
 gi|10444019|gb|AAG17669.1|AF274748_1 response regulator YruR [Yersinia ruckeri]
 gi|238707450|gb|EEP99811.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC
           29473]
          Length = 247

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           ++ +   +     R  +  +    I+           +  + +Y  +  DI       + 
Sbjct: 12  IETIRDYIDRKLERYDSPRYTYMVIDKKNPVD-----VFIVTSYPDEWADIYTSQNYQHI 66

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  +      + P  W       + +        L        G  F +    +    + 
Sbjct: 67  DPIVLTAFKRISPFAWDE-NITILSDLKSSKIFALSKKYNIVNGFTFVLHDHMNNLAMLS 125

Query: 134 FT---------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------L 174
                      +  +    +          ++    L L + +   +            L
Sbjct: 126 LIMDNNADKGLNSRIESDKD---RLQMNLIKIHEKMLMLEQNKLGVSNGKNTDTSGKGIL 182

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   L  A  G T  EIA   G++  TV  ++G+   KL  +N  QAI   +    I
Sbjct: 183 SPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGVELELI 242


>gi|126464154|ref|YP_001045267.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105965|gb|ABN78495.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 238

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 13/226 (5%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           +  ++ S  ELS     +++ +    F  Y++               L  +  +     +
Sbjct: 13  SISRAESRNELS---QALKDAVVGLGFQTYSLAYQRPHALEAVTAPHLTTWPCEQDGASD 69

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  L +  +G+ P+IW+S   +++ +                AG+  P+    
Sbjct: 70  PASARIRDPLLDYAVTGIKPLIWRSGSWKSLRKYR---YFPCLHSFEARAGLIVPLPDRR 126

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERET 179
            + G +   S       E I EA              +           +    L+ R+ 
Sbjct: 127 GRVGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSPALAGLAKLSPRQI 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             L     G ++ EIA  LGLS   V  ++     KLD  +R QA+
Sbjct: 187 EILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232


>gi|330876121|gb|EGH10270.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 240

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y             L     N D   G    
Sbjct: 21  TITELDGQTAIEKALQWLRRECDSERAMFYQFKGP------MLLTFITSNVDDAWGQAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ   ++    +  + +V     LLP     +      
Sbjct: 75  QHELITQDPVIRCYRNQLGFLNWQDAFKQYPASACYEEAVD-ACELLPAISYGYTSHCRG 133

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
            ++   + T   +        E       ++     + +    ++R LT RE   LQ A 
Sbjct: 134 TESVTSVCTLSEVERTIS--AEQKYLVSSLMPVLHSVARGLKFSSRGLTLRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|1217954|emb|CAA65307.1| regulatory protein [Erwinia chrysanthemi]
          Length = 250

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 15/199 (7%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            +  + NY  +  DI       + D  +    + + P  W      +      ++   L 
Sbjct: 43  DVVIISNYPTEWVDIYRNNNYQHIDPVILTAINKISPFSWDDDLVISSKLKFSRIFN-LS 101

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF-------------TSEFLMLANEVIIEAHGACYQV 156
                  G  F +    +    + F                       ++I AH     +
Sbjct: 102 KDYDIVNGYTFVLHSPGNNLAALSFMIEEHRSEELEEIIQNNKDKLQMLLISAHEKLTSL 161

Query: 157 ITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
             +        +S  A   ++RE   L  A  G T +EIA  LG++  TV  ++G+   K
Sbjct: 162 YREMSRNRNNSKSQEADLFSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKK 221

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L  +N   AI   +    I
Sbjct: 222 LGVLNAKHAIRLGVEMNLI 240


>gi|77465673|ref|YP_355176.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77390091|gb|ABA81275.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
          Length = 238

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 13/226 (5%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           +  ++ S  ELS     +++ +    F  Y++               L  +  +     +
Sbjct: 13  SISRAESRNELS---QALKDAVVGLGFQTYSLAYQRPHALEAVTAPHLTTWPCEQDGASD 69

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  L +  +G+ P+IW+S   +++ +                AG+  P+    
Sbjct: 70  PASARIRDPLLDYAVTGIKPLIWRSGSWKSLRKDR---YFPCPHSFEARAGLIVPLPDRR 126

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERET 179
            + G +   S       E I EA              +           +    L+ R+ 
Sbjct: 127 GRIGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSPALAGLAKLSPRQI 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             L     G ++ EIA  LGLS   V  ++     KLD  +R QA+
Sbjct: 187 EILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232


>gi|238789261|ref|ZP_04633048.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC
           33641]
 gi|238722593|gb|EEQ14246.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC
           33641]
          Length = 245

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 65/235 (27%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +++   +           ++   +N              + NY LD             D
Sbjct: 13  EDIRNYIQRRIKSYGDLRYSYLVMNKQTPL-----HPTIISNYPLDWVKKYKKNSYHLID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +      + P  W         +S+     +L        G  F +    +    +  
Sbjct: 68  PVILTAKDKVAPFAWDDNSV-INKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNI 126

Query: 135 T-SEFLMLANEVIIEA-----HGACYQVITDFLELFKKRSSAARN---------LTERET 179
           +      +  +  IE                 L L+   +    +          + RE 
Sbjct: 127 SNGSDDSIYFDESIEINKEKIQMLLILTHEKMLGLYHNSAEKNESGTNKIERDIFSPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EI+  LG+   TV  ++G+   KL  +N   AI   I    I
Sbjct: 187 EILYWASVGKTYSEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|5162957|gb|AAD40485.1|AF079973_1 luxR homolog YpsR [Yersinia pseudotuberculosis]
          Length = 245

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 22/236 (9%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +++   +           ++   +N  +           + NY LD             D
Sbjct: 13  EDIKNYIQRRIKAYGNIRYSYLLMNKKVPL-----HPAIISNYPLDWVKKYKKNSYHLID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +      + P  W        I+S+      L        G  F +    +    +  
Sbjct: 68  PVILTAKGKVAPFAWDDNSV-INIKSTDSAVFNLAREYNIVNGYTFVLHDNNNNMATLNV 126

Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL----------TERE 178
           +  +   +  +  IE                 L L+ K       L          + RE
Sbjct: 127 SSGDDDSIFFDESIEVNKEKIQMLLILFHDKMLGLYNKSHHENNTLNKKENKREIFSPRE 186

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L  A  G T  EIA  LG+   TV  ++G+   KL  +N   AI   I    I
Sbjct: 187 NEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242


>gi|225628596|ref|ZP_03786630.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225616442|gb|EEH13490.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo]
          Length = 268

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 31  SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 90

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA   R      
Sbjct: 91  DPVFQEDAPYYRNDTRAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 150

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +FT E            +          +        K  +S A  LT RE  CL+ 
Sbjct: 151 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 209

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 210 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259


>gi|289668073|ref|ZP_06489148.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 230

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 12/214 (5%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           +    +  +++       +    N   D   +         D           P +W   
Sbjct: 15  YDYAPVPLSIEGALITPTVFMQRNAPGDMQHVWCAHGYYQHDPVQQRATRRTTPFVWSYH 74

Query: 93  QEETVIESSGQ-----LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
            +                 R         G   P+ L            + +      + 
Sbjct: 75  TDGNCAGVEYVGGQHWQVTRYLCDSGMGTGATVPLHLPGGAFATFSGAIDTVDAEAPHLA 134

Query: 148 EAHGA-------CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           EA           +Q     L   ++R      LT RE  CLQ +  G TS+ IA  L  
Sbjct: 135 EAQLLPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKNIAAALNR 194

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TVN +L SA  KL A NR++A+ + + +  +
Sbjct: 195 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 228


>gi|86359866|ref|YP_471757.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
 gi|86283968|gb|ABC93030.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
          Length = 261

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 74/230 (32%), Gaps = 10/230 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
               +   ++  L   Q+         +    A               Y         + 
Sbjct: 30  SAMKNAATVAAALDEFQSHYPIDFVTFH---LARTIVDNVDAPFVRTTYPDSWVSRYLLN 86

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +    S  LP  W+ I    + E++ +  V  E   +   G++ P+     +
Sbjct: 87  DYINVDPIIREGFSRQLPFDWREID---ITETAQEFMVDAELHGIGTNGVSVPIVDKSRR 143

Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           +   I + +       +  + + E     + +    +      +     L  RE  CL  
Sbjct: 144 SLLSINSQKSDEEWTLIERQFLPEWLELGFLLHRKAVFELHGENDPVPALGSREIECLHW 203

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G  S++I + LGLS HT   YL SA  KL       AIA A+    I
Sbjct: 204 ASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNLI 253


>gi|213970237|ref|ZP_03398368.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213925118|gb|EEB58682.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 185

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 60/187 (32%), Gaps = 13/187 (6%)

Query: 55  HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114
           +NYD    +   I      D  L H      P++W     +        L          
Sbjct: 5   NNYDPQWNENYQIHNFVESDPTLQHGFKSNEPMLWSEDTFKD-----HTLLYGEMKKFNL 59

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKR 167
             G            G V  +     +  + +              +  +++ + L    
Sbjct: 60  NYGWLQSSWYNSAAKGVVTLSRSTEAITLKELDAKEAKMSKLVRLTHACLSEIITLSPPY 119

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     L+ RE   L+   DG T E I + LG++  TV  +  +   KL+A N+  A  K
Sbjct: 120 NP-LEKLSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVK 178

Query: 228 AIRFGYI 234
           A   G I
Sbjct: 179 AALLGII 185


>gi|218515977|ref|ZP_03512817.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 173

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 51/172 (29%), Gaps = 2/172 (1%)

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
             +          +        P  +          E      + L        G  FPV
Sbjct: 1   YYDSHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPV 60

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
                  G +  +        E+          +     +L           T  E  CL
Sbjct: 61  HDAAGGRGAMSISGSRNFTMLEMAKIL-FIATLIYDRLSQLTLNEKHKPIAFTSSELDCL 119

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L   G  S EIA+ L LS + VN ++GS   KL    R QA+  A+R   I
Sbjct: 120 RLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 171


>gi|213967475|ref|ZP_03395623.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301386436|ref|ZP_07234854.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058672|ref|ZP_07250213.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131192|ref|ZP_07257182.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927776|gb|EEB61323.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 240

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 75/228 (32%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y             L     N D   G    
Sbjct: 21  TITELDGQTAIEKALQWLRRECDSERAMFYQFKGP------MLLTFITSNVDDAWGQAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ   ++    +  + +V     LLP     +      
Sbjct: 75  QHELITQDPVIRCYRNQLGFLNWQDAFKQYPASACYEEAVD-ACELLPAISYGYTSHCRG 133

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
             +   + T   +        E       ++     + +    ++R LT RE   LQ A 
Sbjct: 134 TDSVTSVCTLSEVERTIS--AEQKYLVSSLMPVLHSVARGLKFSSRCLTLRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|254706324|ref|ZP_05168152.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|254711385|ref|ZP_05173196.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|256029985|ref|ZP_05443599.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
 gi|256158149|ref|ZP_05456065.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|256252900|ref|ZP_05458436.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261219988|ref|ZP_05934269.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261313770|ref|ZP_05952967.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|261318991|ref|ZP_05958188.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|265987006|ref|ZP_06099563.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
 gi|265996667|ref|ZP_06109224.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|260918572|gb|EEX85225.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261298214|gb|EEY01711.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|261302796|gb|EEY06293.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|262550964|gb|EEZ07125.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|264659203|gb|EEZ29464.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
          Length = 259

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 22  SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA   R      
Sbjct: 82  DPVFQEDAPYYRNDTRAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +FT E            +          +        K  +S A  LT RE  CL+ 
Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|254699430|ref|ZP_05161258.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
 gi|261749881|ref|ZP_05993590.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
 gi|261739634|gb|EEY27560.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
          Length = 259

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 22  SDTLALLTRIRDEIGCRYVMHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA   R      
Sbjct: 82  DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +FT E            +          +        K  +S A  LT RE  CL+ 
Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|28453859|gb|AAO43546.1| transcriptional activator CinR [Rhizobium etli CFN 42]
          Length = 246

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 74/230 (32%), Gaps = 10/230 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
               +   ++  L   Q+         +    A               Y         + 
Sbjct: 15  SAMKNAATVAAALDEFQSHYPIDFVTFH---LARTIVDNVDAPFVRTTYPDSWVSRYLLN 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +    S  LP  W+ I    + E++ +  V  E   +   G++ P+     +
Sbjct: 72  DYINVDPIIREGFSRQLPFDWREID---ITETAQEFMVDAELHGIGTNGVSVPIVDKSRR 128

Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           +   I + +       +  + + E     + +    +      +     L  RE  CL  
Sbjct: 129 SLLSINSQKSDEEWTLIERQFLPEWLELGFLLHRKAVFELHGENDPVPALGSREIECLHW 188

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G  S++I + LGLS HT   YL SA  KL       AIA A+    I
Sbjct: 189 ASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNLI 238


>gi|269960068|ref|ZP_06174445.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835367|gb|EEZ89449.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 225

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 68/229 (29%), Gaps = 28/229 (12%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S   +      +QN I       ++I            +C    +  D          
Sbjct: 16  AESSDAIHAWFGELQNEIDFE----FSILGLFGDDYAPDPVCY--GFSPDQFANCFSKKT 69

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +         I+  ++ +       G+  + L G       I            
Sbjct: 70  AESDPLIAALQQSNHGIM--ALMDSHTHPDYGKRLL-LAGYHGDKKAIYLTSFG------ 120

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQL 184
                      ++E I   +     +      +  +        +    LT RE   L  
Sbjct: 121 -------DRQPSSEEIDALYLLTPHLYMASSYVCDRNIRVETLPAPESQLTTRECELLPW 173

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              G ++ EI+  L +S  TV  +L +   KLD  NR  A++KAI  G+
Sbjct: 174 LKLGKSNWEISRLLNISERTVKYHLQNIYRKLDVHNRTHAVSKAIELGW 222


>gi|294853143|ref|ZP_06793815.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR
           [Brucella sp. NVSL 07-0026]
 gi|294818798|gb|EFG35798.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR
           [Brucella sp. NVSL 07-0026]
          Length = 268

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 31  SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 90

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA   R      
Sbjct: 91  DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 150

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +FT E            +          +        K  +S A  LT RE  CL+ 
Sbjct: 151 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 209

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 210 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259


>gi|167583991|ref|ZP_02376379.1| Autoinducer-binding domain protein [Burkholderia ubonensis Bu]
          Length = 275

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 11/211 (5%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              L +     +   F       +   P        + N+     +          +  +
Sbjct: 57  QVLLDVALPLARDLGFQYVGYVISTSLPVSSPRRQSISNFPAAWREWERTRSTLECNPII 116

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
               + + P++W     ++       L     G     +G +  VR      G +     
Sbjct: 117 RRCRASVRPLVWDDASFDSAP-----LFRTALGRAGVRSGWSQLVRDSRGSWGVLTLGRT 171

Query: 138 FLMLAN----EVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTS 191
               A+    +V                 + +          LTE E + L+   DG TS
Sbjct: 172 APHPASCRPYDVEPRLVWLAQMFHYHLSRMCRTGPVGGNEIHLTEMEKTILRWTVDGKTS 231

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
            E+A  L +SV TVN ++ +  +K++  N+ 
Sbjct: 232 GELATILEVSVRTVNFHVQNILMKMNTCNKT 262


>gi|218659948|ref|ZP_03515878.1| autoinducer transcriptional regulator protein [Rhizobium etli
           IE4771]
          Length = 246

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 74/230 (32%), Gaps = 10/230 (4%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
               +   ++  L   Q+         +    A               Y         + 
Sbjct: 15  SAMKNAATVASALDEFQSHYPIDFVTFH---LARTIVDSVDAPFVRTTYPDSWVSRYLLN 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +    S  LP  W+ I    + E++ +  V  E   +   G++ P+     +
Sbjct: 72  DYINVDPIIREGFSRQLPFDWREID---ITETAQEFMVDAELHGIGSNGVSVPIVDKSRR 128

Query: 129 NGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           +   I + +       +  + + E     + +    +      +     L  RE  CL  
Sbjct: 129 SLLSINSQKSDDEWTLIERQFLPEWLELGFLLHRKAVFELHGENDPVPALGSREIECLHW 188

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G  S++I + LGLS HT   YL +A  KL       AIA A+    I
Sbjct: 189 ASRGKDSKDIGKILGLSEHTTRGYLKAARYKLGCPTLSAAIAHAVHLNLI 238


>gi|28869252|ref|NP_791871.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852493|gb|AAO55566.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|330964604|gb|EGH64864.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016917|gb|EGH96973.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 240

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y             L     N D   G    
Sbjct: 21  TITELDGQTAIEKALQWLRRECDSERAMFYQFKGP------MLLTFITSNVDDAWGQAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ   ++    +  + +V     LLP     +      
Sbjct: 75  QHELITQDPVIRCYRNQLGFLNWQDAFKQYPASACYEEAVD-ACELLPAISYGYTSHCRG 133

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
            ++   + T   +        E       ++     + +    ++R LT RE   LQ A 
Sbjct: 134 TESVTSVCTLSEVERTIS--AEQKYLVSSLMPVLHSVARGLKFSSRGLTLRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|157467980|gb|ABV57378.1| ExpR [Erwinia chrysanthemi]
          Length = 250

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 20/232 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   L+          +A   +N           +  + NY  +  +I       + D  
Sbjct: 15  IQNYLNRKLKSYGDLKYAYLIMNKKKPTD-----VVIISNYPSEWVEIYRSNNYQHIDPV 69

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    + + P  W      +      ++   L        G  F +    +    + F  
Sbjct: 70  ILTAINKISPFSWDDNLVISSKLKFSRIFN-LSKEYDIVNGYTFVLHDPGNNLATLSFMF 128

Query: 137 EF-LMLANEVII-----EAHGACYQVITDFLELFKKRS-------SAARNL-TERETSCL 182
           E       E I+     +              L+++ S       S   NL ++RE   L
Sbjct: 129 EENRSGELEEIVHNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNLFSQRENEIL 188

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T +EIA  LG++  TV  ++G+   KL  +N   AI   +    I
Sbjct: 189 YWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|237797654|ref|ZP_04586115.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020504|gb|EGI00561.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 240

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y     L       L     N D   G+   
Sbjct: 21  TITELDGQTAIENALEWLRRECGSERAMFYQFKGPL------LLTFITSNVDDAWGEAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  ++  L  + WQ    +  I +  + +V           +++      
Sbjct: 75  RHELIRHDPVIRCYHHELGFVNWQDAFRQYPISACYKKAVDACE---LLPAVSYGYTNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +   +  E       ++     + +    ++R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGDIERAISAEQKYLISSLMPVLHSVARGLKFSSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISMIREVSESTVKFHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|37223230|gb|AAQ90214.1| LuxR [Vibrio mimicus]
 gi|37223256|gb|AAQ90231.1| LuxR [Aliivibrio fischeri]
          Length = 224

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 11/207 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            +G +S +I++ LG S  TV  +L +A
Sbjct: 197 CEGKSSWDISKILGCSERTVTFHLTNA 223


>gi|294010459|ref|YP_003543919.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673789|dbj|BAI95307.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 253

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 8/228 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
           +++ +L +L   +      +  R F L + I+      +       L  Y     +    
Sbjct: 22  QRAETLGDLHGTIDAAVRDLGFRWFTLLHNIDLRRGDEQS----LFLTTYPSAWLEEVLE 77

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D            + W  + +   +    +  +         +G + P+R    
Sbjct: 78  ERHYIEDPIHAACARTPSGLAWDRVGDMLELTPRQRGILDRARDHDLASGYSLPIRTPGE 137

Query: 128 KNGYVIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184
                         L+ E ++ A            EL  +R+       L+ R+  C+ L
Sbjct: 138 PEAIFTAARSRDEPLSAEEVLTARLLGSVAYDRARELLGERAGPLACVPLSPRQVECIAL 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              G +  EI + LGLS  TV+ Y+ SA  +     R Q + +A+R G
Sbjct: 198 VAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245


>gi|23499883|ref|NP_699323.1| LuxR family transcriptional regulator [Brucella suis 1330]
 gi|62317073|ref|YP_222926.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269066|ref|YP_418357.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|161620206|ref|YP_001594092.1| regulatory protein LuxR [Brucella canis ATCC 23365]
 gi|163844315|ref|YP_001621970.1| hypothetical protein BSUIS_B0125 [Brucella suis ATCC 23445]
 gi|189022339|ref|YP_001932080.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225685981|ref|YP_002733953.1| regulatory protein LuxR [Brucella melitensis ATCC 23457]
 gi|254691441|ref|ZP_05154695.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|254695262|ref|ZP_05157090.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|254698360|ref|ZP_05160188.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|254711984|ref|ZP_05173795.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|254715054|ref|ZP_05176865.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|254731805|ref|ZP_05190383.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|256043041|ref|ZP_05445986.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|256059638|ref|ZP_05449835.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|256111973|ref|ZP_05452924.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|256256626|ref|ZP_05462162.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|256262895|ref|ZP_05465427.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260544312|ref|ZP_05820133.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260564274|ref|ZP_05834759.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260568545|ref|ZP_05839014.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260757058|ref|ZP_05869406.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|260759571|ref|ZP_05871919.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|260762815|ref|ZP_05875147.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882868|ref|ZP_05894482.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|261215627|ref|ZP_05929908.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|261216761|ref|ZP_05931042.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|261319628|ref|ZP_05958825.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|261323608|ref|ZP_05962805.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|265989480|ref|ZP_06102037.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993421|ref|ZP_06105978.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|297249982|ref|ZP_06933683.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196]
 gi|75505158|sp|Q579W9|VJBR_BRUAB RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|81751697|sp|Q8FXF9|VJBR_BRUSU RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|123754460|sp|Q2YJ50|VJBR_BRUA2 RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|190360175|sp|Q8YAY5|VJBR_BRUME RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|23463458|gb|AAN33328.1| transcriptional regulator, LuxR family [Brucella suis 1330]
 gi|62197266|gb|AAX75565.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939340|emb|CAJ12284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           biovar Abortus 2308]
 gi|161337017|gb|ABX63321.1| regulatory protein LuxR [Brucella canis ATCC 23365]
 gi|163675038|gb|ABY39148.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020913|gb|ACD73634.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225642086|gb|ACO01999.1| regulatory protein LuxR [Brucella melitensis ATCC 23457]
 gi|260097583|gb|EEW81457.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260151917|gb|EEW87010.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260155210|gb|EEW90291.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669889|gb|EEX56829.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|260673236|gb|EEX60057.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677166|gb|EEX63987.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|260872396|gb|EEX79465.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|260917234|gb|EEX84095.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|260921850|gb|EEX88418.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|261292318|gb|EEX95814.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|261299588|gb|EEY03085.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|262764291|gb|EEZ10323.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|263000149|gb|EEZ12839.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092732|gb|EEZ16941.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|297173851|gb|EFH33215.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196]
 gi|326410305|gb|ADZ67369.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326553598|gb|ADZ88237.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           M5-90]
          Length = 259

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 22  SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA   R      
Sbjct: 82  DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +FT E            +          +        K  +S A  LT RE  CL+ 
Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|294676640|ref|YP_003577255.1| LuxR family autoinducer-binding transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294475460|gb|ADE84848.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacter capsulatus SB 1003]
          Length = 261

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 77/242 (31%), Gaps = 18/242 (7%)

Query: 11  SSSLQELSPRLHLIQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +S L     R   I     A    +     +   D       +  + N D    D     
Sbjct: 20  ASGLGREVDRFFEIARGFGASALIYDYTPRHRETDGTVTAPAVMMVRNLDPGMIDYWCGR 79

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVR 123
              + D       + + P +W    E      + +  + +  V          GI  P+ 
Sbjct: 80  GYAHVDPVQAVAVNSVAPFVWSYDAEAGDLSASFLTRNSRPVVEFISASGFVNGITVPIH 139

Query: 124 LGFHKNG-----YVIFTSEFLMLANEVIIEAHGACYQVITDF------LELFKKRSSAAR 172
           L           +      F  +A +V+            D            +      
Sbjct: 140 LPGGGYVTVNGLWNGPGRAFAAVAAQVLPGFALMAQAFQNDIGAPAPADPAPPQPQPRTP 199

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE  CL  A  G +++E +  +  SV TV  +L +A  KL A NR  A+A+A+R G
Sbjct: 200 ALSARERECLDHAAQGRSAKETSRLIERSVPTVVMHLNAAVRKLGARNRSHAVAEAVRRG 259

Query: 233 YI 234
            I
Sbjct: 260 LI 261


>gi|224552939|gb|ACN54712.1| PagR [Pantoea agglomerans pv. gypsophilae]
 gi|224552942|gb|ACN54714.1| PagR [Pantoea agglomerans pv. gypsophilae]
          Length = 210

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRSIEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E    E   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVS 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++    L L+ +        L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|254720638|ref|ZP_05182449.1| regulatory protein LuxR [Brucella sp. 83/13]
 gi|265985682|ref|ZP_06098417.1| regulatory protein LuxR [Brucella sp. 83/13]
 gi|264664274|gb|EEZ34535.1| regulatory protein LuxR [Brucella sp. 83/13]
          Length = 259

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 22  SDTLALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA   R      
Sbjct: 82  DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +FT E            +          +        K  +S A  LT RE  CL+ 
Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|261823621|ref|YP_003261727.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|2495420|sp|Q47189|EXPR_PECCC RecName: Full=Transcriptional activator protein expR
 gi|599736|emb|CAA56646.1| expR [Pectobacterium carotovorum]
 gi|261607634|gb|ACX90120.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 73/232 (31%), Gaps = 20/232 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +  +  +  +      +A   +N           I  + N+  +  +I       + D  
Sbjct: 15  IKSQFDMALSHYGDIKYAYMVLNKKKPTE-----ILIISNHHDEWREIYQANNYQHIDPV 69

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    + + P  W         +        L        G  F +    +    +    
Sbjct: 70  VIAALNKITPFPWDE-DLLVSTQLKMSKIFNLSREHNITNGYTFVLHDHSNNLVMLSIMI 128

Query: 137 EFLMLAN-EVIIE-----AHGACYQVITDFLEL--------FKKRSSAARNLTERETSCL 182
           +   ++N + +IE            +  + + L          +RS+     ++RE   L
Sbjct: 129 DESNVSNIDDVIESNKDKLQMTLMTIHAETISLYREMIRNKEDERSNDKDIFSQRENEIL 188

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T +EIA  L +   TV  ++G+   KL  +N   AI   I    I
Sbjct: 189 YWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIELQLI 240


>gi|222109015|ref|YP_002551281.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
 gi|13405830|gb|AAD31606.2| TraR' [Agrobacterium radiobacter K84]
 gi|221727937|gb|ACM30987.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
          Length = 234

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  + +      +A   I            I  + NY  D   +         D  
Sbjct: 21  LKTGLADVADHFGFTGYAYLHIQHKH--------IIAVTNYHHDWRSLYFDKKFDALDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE   +    +            +GI  P+R            S
Sbjct: 73  VKRARSRKHVFAWSGEQERPALSKEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARN---LTERETSCLQLAGDGYTSE 192
           E   +  +  I+A  A   V      +   + +  A +   L  +E + L+    G T E
Sbjct: 133 ERTAIPLDREIDAVAAAAAVGQLHARISFLRITPTAEDAVWLDPKEATYLRWIAVGKTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+  G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234


>gi|154243760|ref|YP_001409333.1| autoinducer-binding domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162882|gb|ABS70097.1| Autoinducer-binding domain protein [Xanthobacter autotrophicus Py2]
          Length = 233

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 81/228 (35%), Gaps = 13/228 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + + Q L   L  +   +    +A   +            I  + NY  +          
Sbjct: 15  ACTEQALKEALAELVQDLGFDGYAYLNVQPVR--------IFAVSNYASEWQARYLTQNY 66

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D  +    + +    W +    ++ +   +            +GI+ PVR  F    
Sbjct: 67  AMIDPVVTMAKAQMKAFAWAAAAPRSLSKPLRRFYSE-ASDFGIRSGISIPVRTAFGHLS 125

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAG 186
            +   S    L  E  I+   A   V     ++ ++ +    +    L  ++  CL+ + 
Sbjct: 126 MLTLASHKPSLNLETDIDQIAAVTAVAQLHAKMEQQDAEPTASVEIDLKAKQALCLKWSA 185

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G T ++IA   G+S  TVN +L +A   LDA +  QA A A +   I
Sbjct: 186 EGKTMKDIASIEGMSFATVNFHLNNARKALDAGSLAQATALATKLKLI 233


>gi|94497064|ref|ZP_01303637.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
 gi|94423436|gb|EAT08464.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
          Length = 253

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 8/228 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
           +++ +L +L   +      +  R F L + I+      +       L  Y     +    
Sbjct: 22  QRAETLGDLHGTIDAAVRDLGFRWFTLLHNIDLRRGDEQS----LFLTTYPSAWLEEVLE 77

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D            + W  + +   +    +  +         +G + P+R    
Sbjct: 78  ERHYLEDPIHAACARTPSGLAWDRVGDVLELTPRQRGILDRARDHDLASGYSLPIRTPGE 137

Query: 128 KNGYVIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184
                         L+ E ++ A            EL  +R+       L+ R+  C+ L
Sbjct: 138 PEAIFTAARSRDEPLSAEEVLTARLLGSVAYDRARELLGERAGPLACVPLSPRQVECIAL 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              G +  EI + LGLS  TV+ Y+ SA  +     R Q + +A+R G
Sbjct: 198 VAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245


>gi|1706700|sp|P54293|ESAR_ERWST RecName: Full=Transcriptional activator protein esaR
 gi|476612|gb|AAA82097.1| esaR [Pantoea stewartii subsp. stewartii DC283]
          Length = 249

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
             L   +    + + + ++A   ++      +    +  + +Y  +   +         D
Sbjct: 13  DTLQTYIQRKLSPLGSPDYAYTVVSK-----KNPSNVLIISSYPDEWIRLYRANNFQLTD 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +        P  W             +    L        G  + +    +    +  
Sbjct: 68  PVILTAFKRTSPFAWDENITLMSDLRFTK-IFSLSKQYNIVNGFTYVLHDHMNNLALLSV 126

Query: 135 ---TSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNL---------TERET 179
               ++   L   +  E                 L       A  L         + RE 
Sbjct: 127 IIKGNDQTALEQRLAAEQGTMQMLLIDFNEQMYRLAGTEGERAPALNQSADKTIFSSREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EIA   G+SV TV  ++ +  VKL   N  QAI   +    I
Sbjct: 187 EVLYWASMGKTYAEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDLI 241


>gi|9297069|sp|O87971|YUKR_YERRU RecName: Full=Transcriptional activator protein yukR
 gi|3388087|gb|AAC28702.1| response regulator YukR [Yersinia ruckeri]
          Length = 229

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 28/228 (12%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            R  +  +    I+           +  + +Y  +  DI       + D  +      + 
Sbjct: 6   ERYDSPRYTYMVIDKKNPVD-----VFIVTSYPDEWADIYTSQNYQHIDPIVLTAFKRIS 60

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT---------S 136
           P  W       + +        L        G  F +    +    +            +
Sbjct: 61  PFAWDE-NITILSDLKSSKIFALSKKYNIVNGFTFVLHDHMNNLAMLSLIMDNNADKGLN 119

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LTERETSCLQLAG 186
             +    +          ++    L L + +   +            L+ RE   L  A 
Sbjct: 120 SRIESDKD---RLQMNLIKIHEKMLMLEQNKLGVSNGKNTDTSGKGILSPRENEVLHWAS 176

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T  EIA   G++  TV  ++G+   KL  +N  QAI   +    I
Sbjct: 177 MGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGVELELI 224


>gi|148558318|ref|YP_001257186.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148369603|gb|ABQ62475.1| transcriptional regulator, LuxR family [Brucella ovis ATCC 25840]
          Length = 268

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 31  SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLITLPATWVARYSSKNYFAI 90

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA   R      
Sbjct: 91  DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 150

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +FT E            +          +        K  +S A  LT RE  CL+ 
Sbjct: 151 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 209

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 210 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259


>gi|218680259|ref|ZP_03528156.1| transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 234

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   +    ++     +A   I                 NYD +             D  
Sbjct: 21  LRQAIADFADQAGFGGYAYLYIRPGHTIAAS--------NYDPEWRSTYFRQNFEAVDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE   +  + +            +GI  P+R            S
Sbjct: 73  VKRAKSLKQAFTWSGEQERPRLSKTERAFYAQAADFGIRSGITVPIRTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
               +  +  I+   A   V      +     + +      L  +E + L+    G T E
Sbjct: 133 AKTAIDLKRDIDTVAAAAAVGQLHSRMCFLPLTPSEQHPAWLDPKEGTYLRWIAVGKTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+A+  G+  ++V + +     +L        IA AIR G I
Sbjct: 193 EVADLEGVKYNSVKSKIEETRKRLGIHTMPHLIALAIRAGLI 234


>gi|298486382|ref|ZP_07004444.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159110|gb|EFI00169.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 238

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y     +       L     N D   G    
Sbjct: 19  TISELDGQTAVENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 72

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125
                  D  +  + + L  + WQ    +  + +  +  V   E       G     R  
Sbjct: 73  QRGLITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAISYGYMNHCRGA 132

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                          ++ E           ++     + +     +R LT RE   LQ A
Sbjct: 133 DSVTSVCTLGEVGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWA 188

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 189 RDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 237


>gi|182679882|ref|YP_001834028.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635765|gb|ACB96539.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 257

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 9/230 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +++ +  E+   + L+  ++    F+ + I    +   ++ +   + +Y  D   +    
Sbjct: 16  QRAKNFSEIHDCVLLVSCQM---GFSYFAITEHFNTQPKRPVPMSIVHYPKDWESLFRRK 72

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D      N+ L    W  +     +     + + L        G   P  +    
Sbjct: 73  RLFGVDPVQRASNNRLRGFFWSEVPRMIPMSRQDHMILELARKNGLGDGYTVPANIPGRY 132

Query: 129 NGYVIFT---SEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCL 182
           NG   F    SE + L  + +                L    +        LT+R+  C+
Sbjct: 133 NGSCSFGMKVSEEVRLEFKHLPLLDYIGTAAFEIAQSLHHGSAPGELDRPRLTDRQLDCV 192

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L   G ++ EI   L +   T   ++  A+ +     R     +A+  G
Sbjct: 193 ALLAQGLSTVEIGHALNIRYETAVQHIKDASQRYGVNRRTPLAVRALLDG 242


>gi|330879892|gb|EGH14041.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y     +       L     N D   G    
Sbjct: 21  TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125
                  D  +  + + L  + WQ    +  + +  +  V   E       G     R  
Sbjct: 75  QREFIPQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAISYGYMNHCRGA 134

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                          ++ E           ++     + +     +R LT RE   LQ A
Sbjct: 135 DSVTSVCTLGEGGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWA 190

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 191 RDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|284008814|emb|CBA75576.1| quorum-sensing transcriptional activator [Arsenophonus nasoniae]
          Length = 257

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 68/232 (29%), Gaps = 20/232 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   L           +A   +N           +  + NY     +I         D  
Sbjct: 27  IKNYLDRELAVFGEFRYAYIILNKRNPAE-----LFAITNYPDQWVEIYKERNYQQIDPV 81

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--F 134
           +    + + P  W                  +        G  F +    ++   +    
Sbjct: 82  VIFALNRVSPFEWDE-SLSINSNVDFSKIFDISKDYNVVNGYTFVLHDYNNRLAMLSIMM 140

Query: 135 TSEFLMLA-----------NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCL 182
            S  ++             + ++++ H     +  + +    +  ++     + RE   L
Sbjct: 141 VSSEVVEIKKKIKEHKNDLHMLLLDVHEKITSLYREMIRQNYQNPASGKECFSPRENEIL 200

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T  EIA  LG+ + TV  ++GS   KL  +N   AI   +    I
Sbjct: 201 YWASMGKTYSEIATILGIKLGTVKFHIGSVVKKLGVMNAKHAIRLGVELQLI 252


>gi|148550964|ref|YP_001260394.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
 gi|148503375|gb|ABQ71627.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 289

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 79/227 (34%), Gaps = 6/227 (2%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +++++L ++   L  I  +   R FAL      +D  R       +  Y +   +     
Sbjct: 58  RQATTLDQVKSLLDAIVRQFGFRWFALVH---NVDLKRTTCKALLITTYPVRWIEEIMES 114

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D         +  + W  I +     +     +         +G   P+R+    
Sbjct: 115 RLYLEDPVHAACVKTVSGLSWDQIGDYIAPNARQLSILERGRAHGLASGFTMPIRMRDEP 174

Query: 129 NGYVIFTSEFLM-LANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLA 185
           +       +    +++  ++ A             L    + ++    L+ R+  C+ L 
Sbjct: 175 DAMFTVARQGDETISSPDLLCARLIGTVAFDQARTLLGPDELANVPIALSPRQIDCIDLV 234

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G +  EI + LGLS  TV+ Y+  A  +     R Q + +A+R G
Sbjct: 235 AQGKSDWEIGQILGLSRDTVHEYVEGARRRYGVRRRTQLVLRAVRDG 281


>gi|222109041|ref|YP_002551307.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
 gi|4883686|gb|AAD31600.1| TraR [Agrobacterium radiobacter K84]
 gi|221727963|gb|ACM31013.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
          Length = 234

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 69/222 (31%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  + +      +A   I            I  + NY  D   +         D  
Sbjct: 21  LKTGLADVADHFGFTGYAYLHIQHKH--------IIAVTNYHHDWRSLYFDKKFDALDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE   +    +            +GI  P+R            S
Sbjct: 73  VKRARSRKQVFAWSGEQERPALSKEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           E   +  +  I+A  A   V      +   R+S        L  +E + L+    G T E
Sbjct: 133 ERTAIPLDREIDAVAAAAAVGQLHARISFLRTSPTAEDAVWLDPKEATYLRWIAVGKTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+  G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDIRSKAHLTALAIRRKLI 234


>gi|306841076|ref|ZP_07473798.1| regulatory protein LuxR [Brucella sp. BO2]
 gi|306846307|ref|ZP_07478868.1| regulatory protein LuxR [Brucella sp. BO1]
 gi|306273302|gb|EFM55171.1| regulatory protein LuxR [Brucella sp. BO1]
 gi|306288886|gb|EFM60191.1| regulatory protein LuxR [Brucella sp. BO2]
          Length = 258

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 8/228 (3%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 22  SDTLALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAV 81

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA   R      
Sbjct: 82  DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDF---LELFKKRSSAARNLTERETSCLQLAG 186
           G  +FT E      + +         +       +   K  +S A  LT RE  CL+ A 
Sbjct: 142 GCTVFTFEVDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAA 201

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 202 NGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 249


>gi|206558215|sp|A5VTN1|VJBR_BRUO2 RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
          Length = 259

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 22  SDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLITLPATWVARYSSKNYFAI 81

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA   R      
Sbjct: 82  DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVA 141

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +FT E            +          +        K  +S A  LT RE  CL+ 
Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|257484466|ref|ZP_05638507.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013268|gb|EGH93324.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 240

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 71/228 (31%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y     +       L     N D   G    
Sbjct: 21  TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ       + +  +  V           I++      
Sbjct: 75  QREFITQDPVIRCYRNQLGFVNWQDAFRHYPVSACYEEIVDTCE---LLPAISYGYMNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +   +  E       ++     + +     +R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|293393478|ref|ZP_06637789.1| transcriptional activator protein CarR [Serratia odorifera DSM
           4582]
 gi|291424079|gb|EFE97297.1| transcriptional activator protein CarR [Serratia odorifera DSM
           4582]
          Length = 245

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 15/198 (7%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           I  + NY  +  +I       + D  +    + + P  W                  L  
Sbjct: 44  INIISNYPDEWVNIYKENNYQHIDPVVIIAFNKIAPFSWDENL-AINSSLKLSKIFNLSR 102

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-EVIIE-----AHGACYQVITDFLEL- 163
                 G  F +    +    +    +       E  IE                 + L 
Sbjct: 103 KYNIINGFTFVLHDPNNNLAMLSIMLDEEKSNEIEENIESNKEKLQMLLISAHDKLISLY 162

Query: 164 -------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                   +K  +     + RE   L  A  G T +EIA  LG+   TV  ++G+   KL
Sbjct: 163 REMSQNKDEKIYNDKEIFSHRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKL 222

Query: 217 DAVNRIQAIAKAIRFGYI 234
             +N   AI   I    I
Sbjct: 223 GVLNAKHAIRLGIELQLI 240


>gi|94497063|ref|ZP_01303636.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
           SKA58]
 gi|94423435|gb|EAT08463.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
           SKA58]
          Length = 248

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 12/231 (5%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
            K +++L +L   +  I   +  R++A ++ ++              + +Y  D  +   
Sbjct: 18  IKDATALSDL---MAEITKAMGFRHYALVHHVDLKPAV-----RSVHIVDYPQDWVERFQ 69

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D      +   +   W ++Q    + ++ +  +          G   P  +  
Sbjct: 70  ARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPG 129

Query: 127 HKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQ 183
             NG   F  +   ML +  +               ++ +  +  +   +LTER+  C+ 
Sbjct: 130 ELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECVA 189

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G T  EI++ LG+   TV  ++  A  +     R     +A+  G I
Sbjct: 190 LVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 240


>gi|307296696|ref|ZP_07576515.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877825|gb|EFN09050.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 253

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 8/228 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
           +++ +L +L   +      +  R F L + I+      +       L  Y     +    
Sbjct: 22  QRAETLGDLHGTIDAAVRDLGFRWFTLLHNIDLRRGDEQS----LFLTTYPSAWLEEVLE 77

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D            + W  + +   +    +  +         +G + P+R    
Sbjct: 78  ERHYIEDPIHAACARTPSGLAWDRVGDVLELTPRQRGILDRARDHDLASGYSLPIRTPGE 137

Query: 128 KNGYVIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQL 184
                         L+ E ++ A            EL  +R+       L+ R+  C+ L
Sbjct: 138 PEAIFTAARSRDEPLSAEEVLTARLLGSVAYDRARELLGERAGPLACVPLSPRQVECIAL 197

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              G +  EI + LGLS  TV+ Y+ SA  +     R Q + +A+R G
Sbjct: 198 VAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245


>gi|22127251|ref|NP_670674.1| transcriptional activator [Yersinia pestis KIM 10]
 gi|45443197|ref|NP_994736.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597561|ref|YP_071752.1| quorum-sensing transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806277|ref|YP_650193.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua]
 gi|108813343|ref|YP_649110.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|149367009|ref|ZP_01889042.1| quorum-sensing transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|153947986|ref|YP_001399708.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162421668|ref|YP_001604810.1| LuxR family transcriptional regulator [Yersinia pestis Angola]
 gi|165927117|ref|ZP_02222949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939283|ref|ZP_02227832.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008826|ref|ZP_02229724.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212673|ref|ZP_02238708.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402287|ref|ZP_02307757.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419559|ref|ZP_02311312.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425196|ref|ZP_02316949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468622|ref|ZP_02333326.1| transcriptional regulator, LuxR family protein [Yersinia pestis
           FV-1]
 gi|170023040|ref|YP_001719545.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186896695|ref|YP_001873807.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928157|ref|YP_002346032.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92]
 gi|229836665|ref|ZP_04456830.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           A]
 gi|229840908|ref|ZP_04461067.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842531|ref|ZP_04462686.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903808|ref|ZP_04518921.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|270487592|ref|ZP_06204666.1| autoinducer binding domain protein [Yersinia pestis KIM D27]
 gi|294502863|ref|YP_003566925.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003]
 gi|21960323|gb|AAM86925.1|AE013939_2 putative transcriptional activator [Yersinia pestis KIM 10]
 gi|30146756|gb|AAC28703.2| response regulator YtbR [Yersinia pseudotuberculosis]
 gi|45438065|gb|AAS63613.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590843|emb|CAH22497.1| Quorum-sensing transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776991|gb|ABG19510.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|108778190|gb|ABG12248.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua]
 gi|115346768|emb|CAL19652.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92]
 gi|149290623|gb|EDM40699.1| quorum-sensing transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|152959481|gb|ABS46942.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           IP 31758]
 gi|162354483|gb|ABX88431.1| transcriptional regulator, LuxR family [Yersinia pestis Angola]
 gi|165912757|gb|EDR31385.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921013|gb|EDR38237.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992165|gb|EDR44466.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205965|gb|EDR50445.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962300|gb|EDR58321.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048324|gb|EDR59732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055959|gb|EDR65740.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749574|gb|ACA67092.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186699721|gb|ACC90350.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679578|gb|EEO75681.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|229690841|gb|EEO82895.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697274|gb|EEO87321.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705608|gb|EEO91617.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           A]
 gi|262360896|gb|ACY57617.1| quorum-sensing transcriptional regulator [Yersinia pestis D106004]
 gi|262364841|gb|ACY61398.1| quorum-sensing transcriptional regulator [Yersinia pestis D182038]
 gi|270336096|gb|EFA46873.1| autoinducer binding domain protein [Yersinia pestis KIM D27]
 gi|294353322|gb|ADE63663.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003]
 gi|320013931|gb|ADV97502.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 247

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 17/201 (8%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            I  + +Y  +  ++         D  +        P  W       + E        L 
Sbjct: 43  DIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDE-NITVLSELKLSKIFTLS 101

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLEL 163
                  G  F +    +    +    +   L                   +     L L
Sbjct: 102 KKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLTL 161

Query: 164 FKKRSSAARN----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            ++  +              L+ RE   L  A  G T +EIA    ++  TV  ++G+  
Sbjct: 162 SQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVV 221

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL  +N  QAI   +    I
Sbjct: 222 KKLGVINAKQAIGLGVELEII 242


>gi|293491178|gb|ADE45143.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 12/214 (5%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           +    +  +L+       +    N   D   +         D           P +W   
Sbjct: 39  YDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYR 98

Query: 93  QEETVIES-----SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
            +             +   R         G+  P+ L            +        + 
Sbjct: 99  TDGHCPGVEYVGGQHRQVTRYLCDSDMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLA 158

Query: 148 EAHGA-----CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGL 200
           EA         +   +   EL   +        LT RE  CLQ +  G TS+ IA  L  
Sbjct: 159 EAQLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNR 218

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TVN +L SA  KL A NR++A+ + + +  +
Sbjct: 219 STATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|330954455|gb|EGH54715.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 240

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 71/228 (31%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     +     +       L     + D   G+   
Sbjct: 21  TITELDGQTAIENALEWLRRECSSERAMFFQFKGPV------LLTFITSSVDDAWGEAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ    +  + +       L         I++      
Sbjct: 75  QHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYGYTNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +   +  E       ++     + +     +R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR QA+  A+  G I
Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGGALCRGLI 239


>gi|320329504|gb|EFW85496.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889863|gb|EGH22524.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330986211|gb|EGH84314.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 240

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y     +       L     N D   G    
Sbjct: 21  TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125
                  D  +  + + L  + WQ    +  + +  +  V   E       G     R  
Sbjct: 75  QREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAISYGYMNHCRGA 134

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                          ++ E           ++     + +     +R LT RE   LQ A
Sbjct: 135 DSVTSVCTLGEVGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWA 190

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 191 RDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|187922148|ref|YP_001893790.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713342|gb|ACD14566.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 206

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 62/199 (31%), Gaps = 5/199 (2%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
               L  PRR  +     +Y  +             D           P  W  I     
Sbjct: 9   YVLTLSNPRRTAIEMIGAHYPREWVQYYEGRDYAATDPVHRAAFIQSTPYRWHDI---AG 65

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQV 156
           +  + +  +          G++ PV            +     +        A     Q 
Sbjct: 66  LSKAERRLLDEAKEAGLPGGLSIPVHQADGSVVLFNLSGPLHSVNDAIKSRIACLISTQF 125

Query: 157 ITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
             +   L    R  A+R LT  +  CL     G TS EIA+ LG S +TV+ ++G A   
Sbjct: 126 HCELHRLSPISRCRASRLLTPCQIVCLTWVARGKTSAEIAKILGRSHYTVDYHIGKAMQA 185

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L+  +R  A   A   G I
Sbjct: 186 LNMCSRTAAAVYASVQGII 204


>gi|326408213|gb|ADZ65278.1| Transcriptional activator, LUXR family [Brucella melitensis M28]
 gi|326537928|gb|ADZ86143.1| Transcriptional activator protein solR [Brucella melitensis M5-90]
          Length = 171

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  L    + + P+IW      +  +                 GI+ P     
Sbjct: 2   AQNYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQ 56

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERE 178
              G + F      L    I        Q++T+ L L   ++    A       +LT RE
Sbjct: 57  GVFGLLSFVRSGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRE 115

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 116 REILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 171


>gi|33636170|emb|CAE45182.1| putative ExpR protein [Pectobacterium atrosepticum]
          Length = 245

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +  +     +      +A   +N           I  + N+  +  +I         D  
Sbjct: 15  IKSQFDTALSHYGDIKYAYMVLNKKKPTE-----ILIISNHHDEWREIYQANNYQQIDPV 69

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    + + P  W         +        L        G  F +    +    +    
Sbjct: 70  VIAALNKITPFPWDE-DLLVSTQLKMSKIFNLSREHNITNGYTFVLHDHNNNLVMLSIMI 128

Query: 137 EFLMLAN-EVIIE-----AHGACYQVITDFLEL--------FKKRSSAARNLTERETSCL 182
           +   + N + +IE            +  + + L          +RS+     ++RE   L
Sbjct: 129 DESNVNNIDDVIESNKDKLQMTLMNIHAETISLYREMIRSKEDERSNDKDIFSQRENEIL 188

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A  G T +EIA  L +   TV  ++G+   KL  +N   AI   I    I
Sbjct: 189 YWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIELQLI 240


>gi|145597841|ref|YP_001161917.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           F]
 gi|145209537|gb|ABP38944.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           F]
          Length = 247

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 17/201 (8%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            I  + +Y  +  ++         D  +        P  W       + E        L 
Sbjct: 43  DIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDE-NITVISELKLSKIFTLS 101

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLEL 163
                  G  F +    +    +    +   L                   +     L L
Sbjct: 102 KKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLTL 161

Query: 164 FKKRSSAARN----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            ++  +              L+ RE   L  A  G T +EIA    ++  TV  ++G+  
Sbjct: 162 SQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVV 221

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL  +N  QAI   +    I
Sbjct: 222 KKLGVINAKQAIGLGVELEII 242


>gi|256014910|ref|YP_003104919.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915]
 gi|255997570|gb|ACU49257.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915]
          Length = 259

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 74/230 (32%), Gaps = 11/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R     Y              +  L           +       
Sbjct: 22  SDTLALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI 81

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        ++ +    I     ++  +  +  +L    E   L    IA          
Sbjct: 82  DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSACNPKGVA 141

Query: 130 GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +FT E            +          +        K  +S A  LT RE  CL+ 
Sbjct: 142 GCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRW 200

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|294010458|ref|YP_003543918.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673788|dbj|BAI95306.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 248

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 79/226 (34%), Gaps = 12/226 (5%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
            K +++L +L   +  I   +  R++A ++ ++              + +Y  D  +   
Sbjct: 18  IKDATALSDL---MAEITKAMGFRHYALVHHVDLKPAV-----RSVHIVDYPQDWVERFQ 69

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D      +   +   W ++Q    + ++ +  +          G   P  +  
Sbjct: 70  ARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPG 129

Query: 127 HKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQ 183
             NG   F  +   ML +  +               ++ +  +  +   +LTER+  C+ 
Sbjct: 130 ELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSEWPSLTERQAECVA 189

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           L   G T  EI++ LG+   TV  ++  A  +     R     +A+
Sbjct: 190 LVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRAL 235


>gi|289626430|ref|ZP_06459384.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649584|ref|ZP_06480927.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866354|gb|EGH01063.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 240

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y     +       L     N D   G    
Sbjct: 21  TISELDGQTAVENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLG 125
                  D  +  + + L  + WQ    +  + +  +  V   E       G     R  
Sbjct: 75  QREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAISYGYMNHCRGA 134

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                          ++ E           ++     + +     +R LT RE   LQ A
Sbjct: 135 DSVTSVCTLGEVGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWA 190

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 191 RDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|404833|emb|CAA80427.1| transcriptional activator [Agrobacterium vitis]
          Length = 234

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  + +      +A   I            I  + NY  D   +         D  
Sbjct: 21  LKTGLADVADHFGFTGYAYLHIQHKH--------IIAVTNYHHDWRSLYFDKKFDALDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE   +    +            +GI  P+R            S
Sbjct: 73  VKRARSRKQVFAWSGEQERPKLSEEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARN---LTERETSCLQLAGDGYTSE 192
           E   +  +  I+A  A   V      +   + +  A +   L  +E + L+    G T E
Sbjct: 133 ERTAIPLDREIDAVAAAAAVGQLHARISFLRITPTAEDAAWLDPKEATYLRWIAVGKTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+   +  ++V   L  A  + D  ++    A AIR   I
Sbjct: 193 EIADVEEVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234


>gi|224552948|gb|ACN54718.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E    E   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVS 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++    L L+ +        L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|62249397|gb|AAX77678.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 245

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 15/198 (7%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           I  + N+  +  +I       + D  +    + + P  W         +        L  
Sbjct: 44  ILIISNHHDEWREIYRANNYQHIDPVVITALNKITPFPWDE-DLLVSTQLKMSKIFNLSR 102

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-EVIIE-----AHGACYQVITDFLEL- 163
                 G  F +    +    +    +   + N + +IE            +  + + L 
Sbjct: 103 EHNITNGYTFVLHDHNNNLVMLSIMIDESNVNNIDDVIENNKDKLQMTLMNIHAETISLY 162

Query: 164 -------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                    +RS+     ++RE   L  A  G T +EIA  L +   TV  ++G+   KL
Sbjct: 163 REMIRNKEDERSNDKDIFSQRENEILYWASMGKTYQEIALILNIKTGTVKFHIGNVVKKL 222

Query: 217 DAVNRIQAIAKAIRFGYI 234
             +N   AI   I    I
Sbjct: 223 GVLNAKHAIRLGIELQLI 240


>gi|21730643|pdb|1L3L|A Chain A, Crystal Structure Of A Bacterial Quorum-Sensing
           Transcription Factor Complexed With Pheromone And Dna
 gi|21730644|pdb|1L3L|B Chain B, Crystal Structure Of A Bacterial Quorum-Sensing
           Transcription Factor Complexed With Pheromone And Dna
 gi|21730645|pdb|1L3L|C Chain C, Crystal Structure Of A Bacterial Quorum-Sensing
           Transcription Factor Complexed With Pheromone And Dna
 gi|21730646|pdb|1L3L|D Chain D, Crystal Structure Of A Bacterial Quorum-Sensing
           Transcription Factor Complexed With Pheromone And Dna
 gi|23200109|pdb|1H0M|A Chain A, Three-Dimensional Structure Of The Quorum Sensing Protein
           Trar Bound To Its Autoinducer And To Its Target Dna
 gi|23200110|pdb|1H0M|B Chain B, Three-Dimensional Structure Of The Quorum Sensing Protein
           Trar Bound To Its Autoinducer And To Its Target Dna
 gi|23200111|pdb|1H0M|C Chain C, Three-Dimensional Structure Of The Quorum Sensing Protein
           Trar Bound To Its Autoinducer And To Its Target Dna
 gi|23200112|pdb|1H0M|D Chain D, Three-Dimensional Structure Of The Quorum Sensing Protein
           Trar Bound To Its Autoinducer And To Its Target Dna
          Length = 234

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  I +      +A   I          + I  + NY                D  
Sbjct: 21  LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHRQWQSTYFDKKFEALDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W    E   +    +            +GI  P++            S
Sbjct: 73  VKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFXSXFTXAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           +  ++  +  I+A  A   +      +   R++        L  +E + L+    G T E
Sbjct: 133 DKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTXE 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+  G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 193 EIADVEGVKYNSVRVKLREAXKRFDVRSKAHLTALAIRRKLI 234


>gi|238653897|emb|CAV30841.1| Transcriptional Regulator, LuxR family [magnetite-containing
           magnetic vibrio]
          Length = 261

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 6/218 (2%)

Query: 23  LIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
            +   +    F              ++L I    NY  +  D    L  +  D    H  
Sbjct: 42  ALLEEVGRHGFDWAMYGFGRRRNDSEELEITYFSNYSKEWQDEYEKLGGSQNDIDTLHCI 101

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH--KNGYVIFTSEFL 139
           S     I+ S +    +    +             GI+FP+R G      G +  ++   
Sbjct: 102 SSTEDQIFFSPETRENLTPEQKAIDEFAQRSGIKNGISFPLRAGPDINDWGGLGLSTRMD 161

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAE 196
                 +++      ++I        +    A+N   LTE+E   L L   G  +++IA+
Sbjct: 162 DDEFSAVLDERRDYLRLIAQVFHAVTQSRPLAKNALLLTEKEKQALSLTAKGLKTKQIAD 221

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KLG+S   V+ ++  AT KL +  R QA+A+AIR   +
Sbjct: 222 KLGMSDKAVDQHIARATAKLASTTRTQAVAEAIRLHIL 259


>gi|77461110|ref|YP_350617.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385113|gb|ABA76626.1| LuxR family regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 235

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 79/235 (33%), Gaps = 14/235 (5%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             K+ +  +E+     +++       F    I  +            ++N+     +   
Sbjct: 8   QIKQLTRAKEIESAFPILRTFANNIGFQFCGIQVSRPESPSF-KPFHINNFTKAWNEE-Y 65

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP-VRLG 125
               +  D    + +  +LP +W         +                 G +   +   
Sbjct: 66  ENNYSEEDPITSYCHQSMLPFLWNRKAFSKAPQ-----MWNALRNHGMEHGWSQSYLNEE 120

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERET 179
                 +        +    + + +G  + +     ELF               L+ RE 
Sbjct: 121 NDLCCTISLARPQSEIFALELYDQYGVMHFITQHLSELFVHALPPVPAKPPPVRLSTREL 180

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++L   G T+ EI + L ++  TVN ++ +  VKL+A N++ AI KA + G++
Sbjct: 181 EIVRLCAYGKTAWEIGQILNVAERTVNYHIKNLIVKLNACNKMSAIVKASKLGFL 235


>gi|224552951|gb|ACN54720.1| PagR [Pantoea agglomerans]
 gi|224552954|gb|ACN54722.1| PagR [Pantoea agglomerans]
 gi|224552957|gb|ACN54724.1| PagR [Pantoea agglomerans]
 gi|224552960|gb|ACN54726.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E    E   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVS 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++    L L+ +        L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLTKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|154813|gb|AAA64793.1| regulatory protein [Plasmid Ti]
          Length = 234

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 68/222 (30%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  I +      +A   I          + I  + NY                D  
Sbjct: 21  LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHRQWQSTYFDKKFEALDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W    E   +    +            +GI  P++            S
Sbjct: 73  VKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSE 192
           +  ++  +  I+A  A   +      +   R++     A  +  +E + L+    G T E
Sbjct: 133 DKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAACVDPKEATYLRWIAVGKTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+  G+  ++V   L     + D  ++    A AIR   I
Sbjct: 193 EIADVEGVKYNSVRVKLRERMKRFDVRSKAHLTALAIRRKLI 234


>gi|464918|sp|P33909|TRAR_AGRVI RecName: Full=Transcriptional activator protein traR
 gi|404827|emb|CAA80423.1| transcriptionnal activator [Agrobacterium vitis]
 gi|404830|emb|CAA80425.1| transcriptional activator [Agrobacterium vitis]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 69/222 (31%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  + +      +A   I            I  + NY  D   +         D  
Sbjct: 21  LKTGLADVADHFGFTGYAYLHIQHKH--------IIAVTNYHHDWRSLYFDKKFDALDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE   +    +            +GI  P+R            S
Sbjct: 73  VKRARSRKQVFAWSGEQERPKLSEEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARN---LTERETSCLQLAGDGYTSE 192
           E   +  +  I+A  A   V      +   + +  A +   L  +E + L+    G T E
Sbjct: 133 ERTAIPLDREIDAVAAAAAVGQLHARISFLRITPTAEDAAWLDPKEATYLRWIAVGKTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+   +  ++V   L  A  + D  ++    A AI+   I
Sbjct: 193 EIADVEEVKYNSVRVKLREAMKRFDVRSKAHLTALAIKRKLI 234


>gi|46275753|dbj|BAD15091.1| probable transcriptional regulator [Pseudomonas azotoformans]
          Length = 202

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 12/198 (6%)

Query: 49  QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI-----ESSGQ 103
             + +L N   D   +         D       S + P +W    +         +    
Sbjct: 3   PSVLQLRNTPPDWHALWCSEGFYQIDPVQHLALSRVSPFVWSYDVKADTPLQKIIDPCHA 62

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVI-----FTSEFLMLANEVIIEAHGACYQVIT 158
                        G++ P+ L       +           L  A + + +     + +  
Sbjct: 63  PVSSYLHDQQLTCGVSVPIHLPRGGFASLTGLRTGNARNVLQDAQQTLSDFGLISHALQE 122

Query: 159 DFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
               LF  + R+    +LT+RE  CL+ A DG T+ EIA +L  S+  V  +L SA  KL
Sbjct: 123 AAYPLFSKELRTYPHIHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKL 182

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A NR+QA+ +A  +  +
Sbjct: 183 GAKNRVQAVVRATHYRLL 200


>gi|307135373|gb|ADN33401.1| HanR [Halomonas anticariensis]
          Length = 252

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            F  +++      P     +  + NY  +   +         D  L H N          
Sbjct: 46  GFEFFSLVLRPCIPFTNNYLYIIDNYGCEWEGLYQDKKFWTIDPVLQHKNYVNK----SG 101

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEA 149
           I  E  +        R        +G++F V         V   S        N+ +   
Sbjct: 102 ILWENSLFDKSNELWRSAEDFGLCSGMSFLVSFSDMPVRGVFSISSKDYYYANNQDVKMQ 161

Query: 150 HGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                 +    ++  K +    ++      L+ RE   L+ + DG TS EI++KL ++  
Sbjct: 162 RYNVCPLSIKVMDCIKGKVDVGKSVANPVFLSVREADILRYSADGLTSSEISKKLYVTKS 221

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T++ ++ +A  KL   N++QA++KA+    +
Sbjct: 222 TIDFHIKNAIDKLGCKNKVQAVSKALLLDIL 252


>gi|224552981|gb|ACN54740.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRSIEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E    +   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVN 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++    L L+ +        L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|224552933|gb|ACN54708.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E   ++   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRLKIVS 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++    L L+ +        L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|298717240|ref|YP_003729882.1| transcriptional activator protein PagR [Pantoea vagans C9-1]
 gi|298361429|gb|ADI78210.1| Transcriptional activator protein PagR [Pantoea vagans C9-1]
          Length = 230

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 73/240 (30%), Gaps = 18/240 (7%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           M +     +K +SL  +   L       +     +Y           Q  I    N +  
Sbjct: 1   MKDTYYNDQKINSL--IKDELDAFFEDYQG---VIYAYAIMNKKDPSQMQII---NNNPA 52

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             D+       + D  +      +    W++    +   +  ++          + G  F
Sbjct: 53  WFDVYLERKYQFIDPVIIRGLRCVEDYFWENEVILSEGYNLTRIFNESFQ-YNIYRGQTF 111

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARN-L 174
           P+    +    +    +      +  I+ H          +    L L+ +        L
Sbjct: 112 PLHDYLNNLVVLSVIGKK---EFDFDIDKHRAKFMSFLIHLHQKTLNLYSQHQQKKNAFL 168

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   L+   DG T  EIA  L ++  TV  ++G+   KL   N   AI        +
Sbjct: 169 SPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAIKLGAELRLL 228


>gi|332188808|ref|ZP_08390518.1| sigma-70, region 4 family protein [Sphingomonas sp. S17]
 gi|332011161|gb|EGI53256.1| sigma-70, region 4 family protein [Sphingomonas sp. S17]
          Length = 239

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 64/220 (29%), Gaps = 7/220 (3%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            + L   +           F +YT     D     +++    ++  +   +         
Sbjct: 22  AETLHATVRAYAAPFGYGRFVIYTAPPPGDGAV-DRILWLEGDWFGNGHRVNAA-TYLAR 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                H      P  W         ++     V    G     G+  P+       G V 
Sbjct: 80  CPVNRHVLETDRPFFWTK---NGTADAETYRVVPHPKGPGI-HGLQVPIFSHVGLAGAVS 135

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSE 192
           F    +  A +  +               L     + A   L+ RE   ++    G    
Sbjct: 136 FGGRTIDSAIDTRLALTLVGTAAFHVAERLAGSVVAHAMPQLSAREREVIRWIASGRRQA 195

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++A  LGLS  T+  +L     +L A +  QAI   +R G
Sbjct: 196 DVAALLGLSERTIENHLRRIRNRLGAASTAQAIHLLVRSG 235


>gi|16119952|ref|NP_396657.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|1730017|sp|P54294|TRAR_AGRT5 RecName: Full=Transcriptional activator protein traR
 gi|299361|gb|AAB26028.1| TraR=tra gene transcriptional activator [Agrobacterium tumefaciens,
           Ti plasmid pTiC58, Peptide Plasmid, 234 aa]
 gi|3153172|gb|AAC17192.1| TraR [Agrobacterium tumefaciens str. C58]
 gi|15163626|gb|AAK91098.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 66/222 (29%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  +        +A   I                 NY  D             D  
Sbjct: 21  LKDGLADLAEHFGFTGYAYLHIQHKHTIAVT--------NYHRDWRSAYFENNFDKLDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE + +    +            +GI  P++            S
Sbjct: 73  VKRAKSRKHVFAWSGEQERSRLSKEERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           E   +  +  I+A  A   V      +   +++        L  +E + L+    G T E
Sbjct: 133 ERPAIDLDREIDAAAAAGAVGQLHARISFLQTTPTVEDAAWLDPKEATYLRWIAVGMTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+A+  G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 193 EVADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234


>gi|238749708|ref|ZP_04611213.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380]
 gi|238712363|gb|EEQ04576.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380]
          Length = 244

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           ++++  +           ++   +N  +           + NY LD             D
Sbjct: 13  EDINNYIQRRIKAYGDLRYSYLVMNKKIPL-----HPAIISNYPLDWVREYQKNSYHLID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +      + P  W         +S+     +L        G  F +    +    +  
Sbjct: 68  PVILTARDKISPFSWDDNSV-INKKSTESAVFKLAREYNIVNGYTFVLHDNSNNMATLNI 126

Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLEL---------FKKRSSAARNLTERET 179
           +      +  +  IE                 L L             +      + RE 
Sbjct: 127 SNGNDDSIFFDENIEKYKEKIQMLLILTHEKMLGLYHNNSINNELHGSNIKKDIFSPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EI+  L +   TV  ++G+   KL  +N   AI   I    I
Sbjct: 187 EILYWASVGKTYSEISIILEIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|446400|prf||1911406A traR protein
          Length = 233

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 67/222 (30%), Gaps = 13/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  +        +A   I                 NY  D             D  
Sbjct: 21  LKDGLADLAEHFGFTGYAYLHIQHKHTIAVT--------NYHRDWRSAYFENNFDKLDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE + +    +            +GI  P++            S
Sbjct: 73  VKRAKSRKHVFAWSGEQERSRLSKEERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           E   +  +  I+A  A   V      +   +++        L  +E + L+    G T E
Sbjct: 133 ERPAIDLDREIDAAAAAGAVGQLHARISFLQTTPTVEDAAWLDPKEATYLRWIAVGMTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+A++ G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 193 EVADE-GVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 233


>gi|71736138|ref|YP_274051.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556691|gb|AAZ35902.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 240

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 13/230 (5%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y     +       L     N D   G    
Sbjct: 21  TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES--SGQLSVRLEGGLLPFAGIAFPVRL 124
                  D  +  + + L  + WQ    +  + +     +        + + G     R 
Sbjct: 75  QREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVVTCELLPAISY-GYMNHCRG 133

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                           ++ E           ++     + +     +R LT RE   LQ 
Sbjct: 134 ADSVTSVCTLGEVGRAISAEQ----KYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQW 189

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A DG T+ EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 190 ARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|10954936|ref|NP_053356.1| hypothetical protein pTi-SAKURA_p118 [Agrobacterium tumefaciens]
 gi|6498289|dbj|BAA87741.1| tiorf116 [Agrobacterium tumefaciens]
          Length = 234

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 66/222 (29%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  +        +A   I                 NY  D             D  
Sbjct: 21  LKDGLADLAEHFGFTGYAYLHIQHKHTIAVT--------NYHRDWRSAYFENNFDKLDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE + +    +            +GI  P++            S
Sbjct: 73  VKRAKSRKQVFAWSGEQERSRLSKEERAFYAHAADFGIRSGITIPIKTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           E   +  +  I+A  A   V      +   +++        L  +E + L+    G T E
Sbjct: 133 ERPAIDLDREIDAVAAAGAVGQLHARISFLQTTPTVEDAAWLDPKEATYLRWIAVGMTME 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+A+  G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 193 EVADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234


>gi|85058263|ref|YP_453965.1| transcriptional activator protein [Sodalis glossinidius str.
           'morsitans']
 gi|84778783|dbj|BAE73560.1| transcriptional activator protein [Sodalis glossinidius str.
           'morsitans']
          Length = 245

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 22/216 (10%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            FA +  N + D            NY  +  +          D  L   +  ++   WQ 
Sbjct: 35  RFAYFIFNKSQDE-----KPVIYSNYPKEWVEKYMKNKLYKQDPVLLVASQKIMSFPWQK 89

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII---- 147
              +   +                 G  FP+    +    +     +     + ++    
Sbjct: 90  NYFK-KTKHQKSNIFAQSSEYNITRGYTFPLHDHENNLAMLSL---YTESDPDQLMKCIS 145

Query: 148 ----EAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKL 198
                 +     +   FL    ++++ +     + LT RE   L  A  G T  EIA  +
Sbjct: 146 DHEDRLYLLFLSIHNRFLAEKAQQTNTSNTKIEKRLTSREIEALHWASIGKTYREIAIIM 205

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G++  TV  ++G+  VKLD +N   AI KA     +
Sbjct: 206 GITESTVKFHIGNLIVKLDVINAKHAIKKATDLHLL 241


>gi|291617509|ref|YP_003520251.1| EanR [Pantoea ananatis LMG 20103]
 gi|151175682|dbj|BAF69065.1| AHL-dependent transcriptional regulator [Pantoea ananatis]
 gi|291152539|gb|ADD77123.1| EanR [Pantoea ananatis LMG 20103]
 gi|327393946|dbj|BAK11368.1| transcriptional activator protein EanR [Pantoea ananatis AJ13355]
          Length = 249

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 65/235 (27%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
             L   +    +   +  +A   ++      +    +  + +Y  +   +         D
Sbjct: 13  DTLQTYIQRKLSSFGSPEYAYTVVSK-----KNPSNVLIISSYPDEWVRLYRANNFQLTD 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +        P  W             +    L        G  + +    +    +  
Sbjct: 68  PVILTAFKRTSPFAWDENITLMSDLRFTK-IFSLSKQYNIVNGFTYVLHDHMNNLALLSV 126

Query: 135 T--SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERET 179
                      + +    G    ++ DF E   + + A                 + RE 
Sbjct: 127 IIKGNDQAALEQRLASEQGTMQMLLIDFNEQMYRLAGAEAERAPTVNQNADKTIFSSREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EIA   G+SV TV  ++ +  VKL   N  QAI   +    I
Sbjct: 187 EVLYWASMGKTYSEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDLI 241


>gi|15967032|ref|NP_387385.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15076305|emb|CAC47858.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
          Length = 184

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 56/177 (31%), Gaps = 9/177 (5%)

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
                  D  +           W+               +  +        F G  FPV 
Sbjct: 7   RKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGYIFPVH 66

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTER 177
                 G +      + L+   +        ++    LEL       +  S     +T R
Sbjct: 67  GRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRR 126

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L    DG TS +I + L +S HTV+ Y+     KL A NR   +A A R G I
Sbjct: 127 EMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLGLI 183


>gi|240142578|ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens
           AM1]
 gi|240012525|gb|ACS43750.1| Hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens
           AM1]
          Length = 265

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 80/253 (31%), Gaps = 31/253 (12%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
              + +  +L   L    ++    +FA   ++   +     ++I           +    
Sbjct: 16  IDAAKTSADLPGILQATASKAGFDSFAF--LDGRAETSVGGRII---TTVAPAWQETYAR 70

Query: 68  LIETYGDDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                 D  +        P  W    + E+       ++++     +  + G+  P+ + 
Sbjct: 71  ENLAAHDPCVRRVAESNSPFFWSDIVLPEDDRRPDLTRMTMTAARDMGYYDGLVMPLHMA 130

Query: 126 FHKNGYVI-----FTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSSAARN-- 173
                 ++     F ++       VI                    +L +  +   ++  
Sbjct: 131 DANGVRMLSSLSLFWADGSEDVRRVIGPRGPAVVKMLAAAWAQKLSDLGEAEAKPVQSPA 190

Query: 174 ------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                       LT RE   L  A  G T++E +  L L   TV+ +L +A  KL A N+
Sbjct: 191 KVLTGLFGRPPKLTSREVDVLSWAAKGKTADETSVILALGRETVHTHLSNACRKLQASNK 250

Query: 222 IQAIAKAIRFGYI 234
             A+A A+    I
Sbjct: 251 THAVAMAVHRRLI 263


>gi|306842528|ref|ZP_07475179.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2]
 gi|306287384|gb|EFM58864.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2]
          Length = 171

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  L    + + P+IW      +  +                 GI+ P     
Sbjct: 2   AQNYAEIDPLLRRGVNSIDPLIWSQNFFASAPQ-----IWADAVKYGLKVGISQPCWAAQ 56

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAA------RNLTERE 178
              G + F      L    I        Q++T+ L L   ++    A       +LT RE
Sbjct: 57  GVFGLLSFVRAGPALTPGEISML-RRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLRE 115

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+   +G T+E I   L +S  TVN ++ +   KL AVN++QA+AKA  FG +
Sbjct: 116 REILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 171


>gi|303248220|ref|ZP_07334483.1| transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302490358|gb|EFL50269.1| transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 258

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 6/225 (2%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S Q  +     +++ +   +     + + L+      + C   ++              
Sbjct: 35  RSRQAFAHLFPKLRSLLPFDHA--LAVIARLEDQTALAIDCCNISFPEQWLRAYTAADAF 92

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            GD  +    SG  P+ W          ++  L           A  + P+     +   
Sbjct: 93  AGDAIVRQALSGPAPLHWAETTPRLPRPNALSLCRDFRMRQGWVA-ASAPLF-AARERAL 150

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGY 189
             F  E                  +     +  +          L+ RE   L    +G 
Sbjct: 151 FCFAGEVGRHDRRSAAILGHLLPHLHLALSQTLRASVPDREPIALSRREREVLDWLKEGK 210

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S +IA  LG+   TV  ++ +   KL AVNR Q +A A+R G I
Sbjct: 211 SSWDIAMVLGIRERTVRFHVANLMRKLGAVNRAQTVALALRRGLI 255


>gi|224552909|gb|ACN54692.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N + +  DI       + D  +      +    W++    +   +  ++          F
Sbjct: 28  NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86

Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173
            G  FP+    +    +   S +   +  E    +      ++    L L+ +       
Sbjct: 87  QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNA 146

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+  G G T  E+A  L ++  TV  ++G+   KL   N   A+       
Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206

Query: 233 YI 234
            +
Sbjct: 207 LL 208


>gi|238794186|ref|ZP_04637801.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
 gi|238726476|gb|EEQ18015.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
          Length = 214

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 17/201 (8%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            I  + +Y  +  DI         D  +        P  W       + E        L 
Sbjct: 10  DIFIVTSYPNEWADIYTTHNYQLIDPVVLTAFRRFSPFSWDE-NITVLSELKLSKIFALS 68

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLEL 163
                  G  F +    +    +    +  +                    +     L L
Sbjct: 69  KKYNIVNGFTFVLHDTMNNLAMLSLIMDDDVQKEVEGRVVNDRDRLQMVLIETHEKMLTL 128

Query: 164 FKKRS----------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            + +           S+   L+ RE   L  A  G T +EIA   G++  TV  ++G+  
Sbjct: 129 SQNKINVLGLKGTGISSKTLLSPRENEVLHWASMGKTYQEIALITGITSRTVKYHIGNVV 188

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL  +N  QAI   +    I
Sbjct: 189 KKLGVINAKQAIRLGVELELI 209


>gi|163760319|ref|ZP_02167402.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162282718|gb|EDQ33006.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 208

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 77/219 (35%), Gaps = 13/219 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +       +     + +F L  +++  D P        LHN      D    +     D 
Sbjct: 2   DFFRLFKALAAVHDSEHFVLVELSTD-DKPLDLNRGHSLHNVSDAFLDA-EAVSAKRDDP 59

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +    +   P  + +   +T           L       + +  P+     K   +I  
Sbjct: 60  LVACLLTSTAPKSFDATTTKT----------PLIARCGSKSAVVVPLHTAVGKRFGLILL 109

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                  +  +         V   + E+     S    L+ERE   +    +G TS EIA
Sbjct: 110 RNRERPLHSEVALIAYDASIVFQRYFEVVLSLDS-ISGLSEREIQIVSWTSEGKTSSEIA 168

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LGLS HTVN+Y+ +   KL  VNR Q +A A+R G I
Sbjct: 169 IILGLSEHTVNSYIAAILRKLQVVNRAQMVASALRNGLI 207


>gi|224552969|gb|ACN54732.1| PagR [Pantoea agglomerans]
 gi|224552972|gb|ACN54734.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E    +   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++    L L+ + +      L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLIKLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|317491518|ref|ZP_07949954.1| autoinducer binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316921065|gb|EFV42388.1| autoinducer binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 246

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           + L   +    ++  +  +A   +N      +    +  + +Y  +  ++       + D
Sbjct: 13  ETLRDYIDRKLSQFGSPEYAYTVVNK-----KNPSKLLIISSYPDEWVNLYIANNLQHID 67

Query: 75  DFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
             +        P +W   I   + ++ S   S  L        G  F +    +    + 
Sbjct: 68  PVILTAFKRTSPFVWDENITLMSDLKVSKIFS--LSKKYNIANGYTFVLHDHLNNLALLS 125

Query: 134 FT-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARN---------LTERE 178
                 +    E               ++      L +  S               T RE
Sbjct: 126 LIIDSNMKANLEEQFSSEKGNLQMLLIEINEQMYRLVQSVSVDKDGSEMGVSKATFTARE 185

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L  A  G T  EIA  +G+SV TV  ++G+   KL   N  QAI   +    I
Sbjct: 186 HEVLYWASMGKTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELELI 241


>gi|220920961|ref|YP_002496262.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945567|gb|ACL55959.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 242

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 63/220 (28%), Gaps = 15/220 (6%)

Query: 23  LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82
            + +R+  R  A  ++  A       Q       Y     +          D  +     
Sbjct: 29  RMADRMGYRWIAYLSMTDA-------QEHEITSTYAPPWVEHYFANNYEQIDPCVLASRE 81

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142
              P  W S+     I  +              AGI  P+     +       ++     
Sbjct: 82  QSQPFRWGSLGPPIEIPENVLRLYDDARSYGIRAGITIPILGPSGRWSAFTMATDESETE 141

Query: 143 NEVII------EAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEI 194
                             Q     L    + S+  R   LT+ +  CLQ   +G   +  
Sbjct: 142 ALARQTDYLTSMMTMMALQFHARLLITAPRFSAETRPKLLTDVQARCLQAVANGEPMKVA 201

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +LGL+  TV  +L  A  +L A N    +  A   G I
Sbjct: 202 AHELGLTHRTVIHHLNMARKRLGAKNITHTVKTAFHLGLI 241


>gi|86359865|ref|YP_471756.1| conjugal transfer transcriptional regulator protein [Rhizobium etli
           CFN 42]
 gi|28453858|gb|AAO43545.1| transcriptional activator protein TraR [Rhizobium etli CFN 42]
 gi|86283967|gb|ABC93029.1| conjugal transfer transcriptional regulator protein, LuxR family
           [Rhizobium etli CFN 42]
          Length = 239

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 68/217 (31%), Gaps = 9/217 (4%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             ++N   A     Y    A     R       +NY  D  +       T  D  +    
Sbjct: 28  VALRNYGAAFGLERYAYLEASGAEVR-----TFNNYPKDWQEAYLSGHYTRIDPVVTEAK 82

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
                  W +        S  +            +G+       F  +  + F +     
Sbjct: 83  RRQEAFGWTADNWPARGTSDLRKFREQAVDHGLRSGVTIGTDGSFGSHLMLTFATSEART 142

Query: 142 ANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               + +   A   ++     L     + + +  R L+ RE +CL  A  G T+ E A  
Sbjct: 143 DLVEMQQTFQALQALLVVHYRLRFIAARTQLAPKRTLSPREMTCLLWATKGKTAPETAML 202

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G++  TV  YL  A  K DA +  Q +A A   G +
Sbjct: 203 TGINARTVQHYLDKAREKFDAQSVPQLVAIAKDRGLL 239


>gi|283786604|ref|YP_003366469.1| quorum sensing transcriptional regulator CroR [Citrobacter
           rodentium ICC168]
 gi|282950058|emb|CBG89690.1| quorum sensing transcriptional regulator CroR [Citrobacter
           rodentium ICC168]
          Length = 230

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 7/188 (3%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           +  ++N      DI       + D  +    S +    W++    +   +  ++      
Sbjct: 44  MRIINNNPQ-WFDIYLERKYQFIDPVIIRALSSVEDFYWENKVLLSGGYNLTRIFNES-S 101

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKR 167
               + G  FP+    +    +   S     + +        H    Q+    L L+ K 
Sbjct: 102 EHNIYQGHTFPLHDYLNNLVVLSIISHKDSGIDMTANRSYFMHFLV-QLHQKTLNLYSKV 160

Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                  L+ RE   L+    G T  E++  L ++  TV  ++ +A  KL   N   A+ 
Sbjct: 161 HQKKNVFLSPRERQILKWVSAGKTYAEVSLILSITERTVKFHMSNAMKKLGVNNARHAVK 220

Query: 227 KAIRFGYI 234
             +    +
Sbjct: 221 LGMELRLL 228


>gi|224552996|gb|ACN54750.1| PagR [Pantoea sp. C9-1]
          Length = 210

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 10/185 (5%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N +    D+       + D  +      +    W++    +   +  ++          +
Sbjct: 28  NNNPAWFDVYLERKYQFIDPVIIRGLRCVEDYFWENEVILSEGYNLTRIFNESFQ-YNIY 86

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSA 170
            G  FP+    +    +    +      +  I+ H          +    L L+ +    
Sbjct: 87  RGQTFPLHDYLNNLVVLSVIGKK---EFDFDIDKHRAKFMSFLIHLHQKTLNLYSQHQQK 143

Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   L+   DG T  EIA  L ++  TV  ++G+   KL   N   AI    
Sbjct: 144 KNAFLSPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAIKLGA 203

Query: 230 RFGYI 234
               +
Sbjct: 204 ELRLL 208


>gi|224552978|gb|ACN54738.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S     +  E    +   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISHKDSGIDMEKNRSKIVS 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++    L L+ +        L+ RE   L+    G T  E+A  L ++  TV  ++G
Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVXAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|212638021|ref|YP_002314541.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559501|gb|ACJ32556.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 208

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCL 182
                Y++ TS+   +AN +    HG      +V    +   +K S     LT RE   L
Sbjct: 96  AGAVSYMLKTSKASEIANAIRATFHGQSVFEPEVTGKMMNSMRKPSLPHEQLTSREMEVL 155

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   G T++EIAE+L +S+ TV  ++ +   KLD  +R QA+  A + G +
Sbjct: 156 LLIAQGKTNQEIAEELFISLKTVKVHVSNILAKLDVQDRTQAVIYAFKHGLV 207


>gi|37223205|gb|AAQ90198.1| LuxR [Aliivibrio fischeri]
          Length = 222

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 70/196 (35%), Gaps = 11/196 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +++  L  I   I   +   Y           +  +  + NY        +       D 
Sbjct: 24  DINQCLSEIAKII---HCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDP 80

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + +  S   PI W  + E+  I+      ++         G +FP+    +  G + F 
Sbjct: 81  VVDYSKSHHSPINWN-VFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFA 139

Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                +  + +   H           ++ ++ ++   R  +   LT+RE  CL  A +G 
Sbjct: 140 HSDKDIYTDSLF-LHASTNVPLMLPSLVDNYQKINLTRKKSDSILTKREKECLAWASEGK 198

Query: 190 TSEEIAEKLGLSVHTV 205
           ++ +I++ LG S  TV
Sbjct: 199 STWDISKILGCSERTV 214


>gi|190410128|ref|YP_001965652.1| probable transcription activator TraR [Sinorhizobium meliloti]
 gi|125631158|gb|ABN47159.1| probable transcription activator TraR [Sinorhizobium meliloti SM11]
          Length = 237

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 14/222 (6%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           +   L  + +R +   +A   +             C + N   D             +  
Sbjct: 26  VKAALEGLADRFEFSGYAYTKLLPG--------EFCVISNLHPDWLKRKRKFDLDRRNPV 77

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L          +W    +E  +    Q            +GI  P+ +       + F S
Sbjct: 78  LRRAQQSRRAFVWS--SQEENLSEEDQSFFGCAAKFEIRSGITIPIAISNGAISALSFVS 135

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
              +L  +  I+   A   V      + + + + +      LT +E +  +    G T E
Sbjct: 136 PKPVLTAQEEIDPIAASSAVGQLHARIEQLKVAPSIQEPFYLTPKEGTYTRWLSLGKTVE 195

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + A+   +  +TV   L  A  + D  N  Q +A AIR G +
Sbjct: 196 DTADIEHVKYNTVRIALAEARRRYDLCNNTQLVALAIRRGLV 237


>gi|331005380|ref|ZP_08328764.1| Transcriptional activator protein vanR [gamma proteobacterium
           IMCC1989]
 gi|330420834|gb|EGG95116.1| Transcriptional activator protein vanR [gamma proteobacterium
           IMCC1989]
          Length = 271

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 8/231 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + ++S++EL     +I       + A   I+   +      L   +HN            
Sbjct: 42  QHANSIKELFAMYEVIMKHYGFDHLAHAVISDHDELKNGSALGLTVHNELNGWEKHYLEQ 101

Query: 69  IETYGD--DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                D    + +  +G     W    ++  +                ++G+   +    
Sbjct: 102 NYIAIDLAPQITYSKAGF--FTWHD-MKQQALSREQSAIFNEAEDFKLYSGVNVSIHNAN 158

Query: 127 HKNGYVIFTSEFLMLANEVII--EAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQ 183
                +I  S     +         +   +Q  T FL L K      +  LT++E   L+
Sbjct: 159 GVKCVIIAASNQQGFSVNQYTKDIVNLLAHQFNTCFLSLTKHELIQKKIPLTQKEEEILK 218

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G +  EI +K+ +S HTV+ Y+ S   K+   N +  + KAI+   I
Sbjct: 219 WISKGLSKPEIGDKMNISSHTVSYYMRSIFKKMGTNNTVSTVIKAIKEELI 269


>gi|307944862|ref|ZP_07660200.1| ATP-dependent transcription regulator LuxR [Roseibium sp.
           TrichSKD4]
 gi|307772076|gb|EFO31299.1| ATP-dependent transcription regulator LuxR [Roseibium sp.
           TrichSKD4]
          Length = 240

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 73/232 (31%), Gaps = 12/232 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
            S+  +L               F                    L N      +       
Sbjct: 13  ISNETDLKSVWAKACGYFSGHGFNSLIYADINSIGES----LILSNAPTQWIEHYEASGY 68

Query: 71  TYGDDFLFHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAGIA--FPVRLGF 126
              D F  +  +    +      +     ++   +  +         AG +  F      
Sbjct: 69  ASCDPFFKYCCNTYGSLRTGSAYLSRYKYLQPKERQLILDASEAGLTAGFSSVFRTNGTN 128

Query: 127 HKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
              G+ I +       ++V+     E H     +     ++     S+A  LT RE  CL
Sbjct: 129 GCGGWNILSDAGSEHVDQVLQDREAEFHFLANFLHLRMKDVALHAHSSAPVLTRRELECL 188

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    G  + E+A+KL +S  TV  ++ +A  KL A  R QA+A+A+    +
Sbjct: 189 KWLSAGLRTAELADKLAISGPTVEFHIKNAREKLSAKTREQAVARAVSLKLL 240


>gi|270264188|ref|ZP_06192455.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13]
 gi|270041837|gb|EFA14934.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13]
          Length = 249

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           + L   +    + + +  +A   +       +    +  + +Y  +  D+         D
Sbjct: 13  ETLRDHIDRKLSSLGSPEYAYTVVRK-----KNPSDVLIISSYPDEWVDLYRANNFQLTD 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +        P  W             +    L        G  F +    +    +  
Sbjct: 68  PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLSKQYNIINGFTFVLHDHMNNLALLSV 126

Query: 135 TSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTERET 179
                         +            +      L    SS+ +           T RE 
Sbjct: 127 IIANNGQEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EIA   G+SV TV  ++G+  VKL   N  QAI   +    I
Sbjct: 187 EVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|39979986|gb|AAR32909.1| SplR [Serratia plymuthica]
          Length = 249

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           + L   +    + + +  +A   +       +    +  + +Y  +  D+         D
Sbjct: 13  ETLRDHIDRKLSSLGSPEYAYTVVRK-----KNPSDVLIISSYPDEWVDLYRANNFQLTD 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI- 133
             +        P  W             +    L        G  F +    +    +  
Sbjct: 68  PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLSKQYNIINGFTFVLHDHMNNLALLSV 126

Query: 134 -FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERET 179
              S       + +    GA   ++ D  E   + + AA +              T RE 
Sbjct: 127 IIASNGQEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EIA   G+SV TV  ++G+  VKL   N  QAI   +    I
Sbjct: 187 EVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|224552984|gb|ACN54742.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E    E  G
Sbjct: 66  ILSGGYNLTRIFNESNQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVG 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +    L L+ +        L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLVNLHQKTLNLYSQHYQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|114217274|dbj|BAF31200.1| AHL-dependent transcriptional regulator [Serratia marcescens]
 gi|172044716|gb|ACB69923.1| SpnR [Serratia marcescens]
          Length = 247

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 60/235 (25%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           + L   +    +      +A   ++      +    +  +  Y  +  ++         D
Sbjct: 13  ETLREYIDRKLSSFGRLEYAYTVVSK-----KNPSDVLIISTYSDEWVELYRTNNFQLTD 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +        P  W             +    L        G  F +    +    +  
Sbjct: 68  PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLAKHYNIVNGFTFVLHDHMNNLALLSV 126

Query: 135 T------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTERET 179
                   E                  +      L    SS  +           T RE 
Sbjct: 127 IIANNEQGELEARLTSERGAIQILLIDINEQMYRLAGASSSGRQRHHMDMVKPIFTPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  +  G T  EIA   G+S+ TV  ++G+   KL   N  QAI   +    I
Sbjct: 187 EVLYWSSMGKTYGEIAAIAGISISTVKFHMGNIVSKLGVSNARQAIRLGVELELI 241


>gi|17989461|ref|NP_542094.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1
           str. 16M]
 gi|17985340|gb|AAL54358.1| transcriptional activator, luxr family [Brucella melitensis bv. 1
           str. 16M]
          Length = 235

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 74/226 (32%), Gaps = 11/226 (4%)

Query: 19  PRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             L  I++ I  R     Y              +  L           +       D   
Sbjct: 2   ALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAIDPVF 61

Query: 78  F----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                ++ +    I     ++  +  +  +L    E   L    IA   R      G  +
Sbjct: 62  QEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTV 121

Query: 134 FTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           FT E            +          +        K  +S A  LT RE  CL+ A +G
Sbjct: 122 FTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRWAANG 180

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 181 KTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 226


>gi|224552912|gb|ACN54694.1| PagR [Pantoea agglomerans]
 gi|224552930|gb|ACN54706.1| PagR [Pantoea agglomerans]
 gi|224552963|gb|ACN54728.1| PagR [Pantoea agglomerans]
 gi|224552966|gb|ACN54730.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N + +  DI       + D  +      +    W++    +   +  ++          F
Sbjct: 28  NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86

Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173
            G  FP+    +    +   S +   +  E    +      ++    L L+ +       
Sbjct: 87  QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNV 146

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+  G G T  E+A  L ++  TV  ++G+   KL   N   A+       
Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206

Query: 233 YI 234
            +
Sbjct: 207 LL 208


>gi|224552903|gb|ACN54688.1| PagR [Pantoea agglomerans]
 gi|224552906|gb|ACN54690.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N + +  DI       + D  +      +    W++    +   +  ++          F
Sbjct: 28  NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86

Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173
            G  FP+    +    +   S +   +  E    +      ++    L L+ +       
Sbjct: 87  QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNV 146

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+  G G T  E+A  L ++  TV  ++G+   KL   N   A+       
Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206

Query: 233 YI 234
            +
Sbjct: 207 LL 208


>gi|317054416|ref|YP_004118441.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
 gi|316952411|gb|ADU71885.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 243

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 10/195 (5%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            I  + +       +         D  + +  + + P+IW          +  +++  L 
Sbjct: 43  DIMVISDIPDYFESVYLKNRYQSIDPIIINALNRVSPVIWDETLIVNSQWTIRKITDSLR 102

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF-TSEFLMLANEV-----IIEAHGACYQVITDFLEL 163
                 +G  F +    +    +    ++FL    +        +  G         L L
Sbjct: 103 PDYNIVSGHTFVLHDQNNYLAVLSLYVNKFLEPEIDDKVKKHRNDLQGVLIDTHEMLLHL 162

Query: 164 FK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           +     + S     L+ RE   L  +  G T  EIA  L ++V TV  ++G    KL   
Sbjct: 163 YHEENVRTSRHDDTLSARENEILYWSSTGKTYPEIARMLDITVSTVKFHMGKIVKKLGVN 222

Query: 220 NRIQAIAKAIRFGYI 234
           N   AI+ AI    I
Sbjct: 223 NAKHAISLAIELNII 237


>gi|222083272|ref|YP_002542675.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221738652|gb|ACM39490.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 234

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 12/218 (5%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  +        +A   I                 NY  +             D  +   
Sbjct: 25  LADLTQHFGFTGYAYLHIQHKHTIAVT--------NYHREWRSTYFDKHFDKLDPVVKRA 76

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
            S      W   Q+        +            +G+  P++            SE   
Sbjct: 77  KSRKQVFAWSGEQDRARQSKEERAFYAHAADFGIRSGVTVPIKTANGSMSMFTLASEKPA 136

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAE 196
           +  +  I+A  A   V      +   +++        L  +E + L+    G T EEIA+
Sbjct: 137 IDLDREIDAVAAAAAVGQLHARISFLQTTPTVEDAAWLDPKEATYLRWIAVGMTMEEIAD 196

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G+  ++V   L  A  + D  ++    A AIR   I
Sbjct: 197 VEGIKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234


>gi|56718415|gb|AAW27922.1| SplR [Serratia plymuthica]
          Length = 249

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           + L   +    + + +  +A   +       +    +  + +Y  +  D+         D
Sbjct: 13  ETLRDHIDRKLSSLGSPEYAYTVVRK-----KNPSDVLIISSYPDEWVDLYCANNFQLTD 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI- 133
             +        P  W             +    L        G  F +    +    +  
Sbjct: 68  PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLSKQYNIINGFTFVLHDHMNNLALLSV 126

Query: 134 -FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERET 179
              S       + +    GA   ++ D  E   + + AA +              T RE 
Sbjct: 127 IIASNGQEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EIA   G+SV TV  ++G+  VKL   N  QAI   +    I
Sbjct: 187 EVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|224552945|gb|ACN54716.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFYWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E    +   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++    L L+ +        L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|306837362|ref|ZP_07470241.1| regulatory protein LuxR [Brucella sp. NF 2653]
 gi|306407554|gb|EFM63754.1| regulatory protein LuxR [Brucella sp. NF 2653]
          Length = 235

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 74/226 (32%), Gaps = 11/226 (4%)

Query: 19  PRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             L  I++ I  R     Y              +  L           +       D   
Sbjct: 2   ALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAIDPVF 61

Query: 78  F----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                ++ +    I     ++  +  +  +L    E   L    IA   R      G  +
Sbjct: 62  QEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTV 121

Query: 134 FTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           FT E            +          +        K  +S A  LT RE  CL+ A +G
Sbjct: 122 FTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVC-GCKDANSVASLLTPREVDCLRWAANG 180

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 181 KTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 226


>gi|107101332|ref|ZP_01365250.1| hypothetical protein PaerPA_01002366 [Pseudomonas aeruginosa PACS2]
 gi|296389701|ref|ZP_06879176.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAb1]
          Length = 160

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 11/164 (6%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           + H      P+IW     +       +             G + PVR  +     +    
Sbjct: 1   MRHGLLEYTPLIWNGEDFQEN-----RFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVR 55

Query: 137 EFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYT 190
               +A   I+E           +   F +L   R        LT RET  L+    G T
Sbjct: 56  SSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKT 115

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             EI   L +   TV  ++ +A  KL++ N+ +A  KA   G +
Sbjct: 116 YGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 159


>gi|224552927|gb|ACN54704.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E    +   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +    L L+ + +      L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|30315261|gb|AAP30848.1|AF503776_1 HalR [Hafnia alvei]
          Length = 246

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           + L   +    ++  +  +A   +N      +    +  + +Y  +  ++       + D
Sbjct: 13  ETLRDYIDRKLSQFGSPEYAYTVVNK-----KNPSKLLIISSYPDEWVNLYIANNLQHID 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +        P +W         +        L        G  F +    +    +  
Sbjct: 68  PVILTAFKRTSPFVWDENITLM-SDLKISKIFSLSKKYNIANGYTFVLHDHLNNLALLSL 126

Query: 135 T-SEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARN---------LTERET 179
                +    E               ++      L +  S               T RE 
Sbjct: 127 IIDSNMKANLEEQFSSEKGNLQMLLIEINEQMYRLVQSVSEDKDGSEMGVSKATFTAREH 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EIA  +G+SV TV  ++G+   KL   N  QAI   +    I
Sbjct: 187 EVLYWASMGNTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELELI 241


>gi|320323453|gb|EFW79538.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 240

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 9/228 (3%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     Y     +       L     N D   G    
Sbjct: 21  TISELDGQTAIENALEWLRRECNSERAMFYQFKGPV------LLTFITCNVDDAWGKAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ    +  + +  +  V           I++      
Sbjct: 75  QREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCE---LLPAISYGYMNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +   +  E       ++     + +     +R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T+ EI+    +S  TV  +L +   KL   NR Q + +A+  G I
Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQTVGEALCRGLI 239


>gi|224552915|gb|ACN54696.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 10/185 (5%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N + +  DI       + D  +      +    W++    +   +  ++          F
Sbjct: 28  NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86

Query: 116 AGIAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
            G  FP+    +    +       +   +      I         +    L L+ + +  
Sbjct: 87  QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIFS---FLINLHQKTLNLYSQHNQK 143

Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   L+  G G T  E+A  L ++  TV  ++G+   KL   N   A+    
Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203

Query: 230 RFGYI 234
               +
Sbjct: 204 ELRLL 208


>gi|306431674|emb|CBM41479.1| N-acyl homoserine lactone sensor/regulator [Erwinia toletana]
          Length = 245

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 19/203 (9%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV- 106
              +  + NY  +  D        + D  +    + + P  W    +  V+ S  + S  
Sbjct: 41  PSEVVIISNYPKEWVDTYLENNYQHIDPVILTAINKISPFSW---DDNQVVNSRLKFSRI 97

Query: 107 -RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA-------------NEVIIEAHGA 152
             L        G  F +         +    +    +               ++IEAH  
Sbjct: 98  FNLSKQYNIVNGYTFVLHDNNSNLATLSLMLDEQDSSSIEEVIKSNKNKIQMLLIEAHEK 157

Query: 153 CYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +  + +E  K ++ +     ++RE   L  A  G T  EIA  LG+ + TV  ++G+
Sbjct: 158 ITSLYKNIIESEKNKAINKKDIFSQRENEILYWASIGKTYPEIAVILGIKISTVKFHIGN 217

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL  +N   AI   +    I
Sbjct: 218 VVKKLGVLNAKHAIRLGVELQLI 240


>gi|237846558|gb|ACR22887.1| SplR [Serratia plymuthica]
          Length = 249

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           + L   +    + + +  +A   +       +    +  + +Y  +  D+         D
Sbjct: 13  ETLRDHIDRKLSSLGSPEYAYTVVRK-----KNPSDVLIISSYPDEWVDLYRANNFQLTD 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI- 133
             +        P  W             +    L        G  F +    +    +  
Sbjct: 68  PVILTAFKRTSPFAWDENITLMSDLKFTK-IFSLSKQYNTINGFTFVLHDHMNNLALLSV 126

Query: 134 -FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERET 179
              S       + +    GA   ++ D  E   + + AA +              T RE 
Sbjct: 127 IIASNGQEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G T  EIA   G+SV TV  ++G+  VKL   N  QAI   +    I
Sbjct: 187 EVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|291614729|ref|YP_003524886.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
 gi|291584841|gb|ADE12499.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
          Length = 690

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 66/235 (28%), Gaps = 16/235 (6%)

Query: 13  SLQELSPRLH---------LIQNRIKARNFALYTINSALDFPR-RQQLICELHNYDLDSG 62
           S  +    L            Q  +    F  +   + L            +  Y     
Sbjct: 2   SHDDFKSLLEVRNEAELRQRAQEVVVGFGFDYFLYATGLKMENSTTSFTKVITTYPAAWI 61

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           +          D  + H      P IW +   E+   +   L           +G++ P+
Sbjct: 62  EKYVSAGYASIDPAVRHSMERRTPYIWSAEAFES---AGAGLMFEDARHHGIVSGMSVPL 118

Query: 123 RLGFHKN--GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERET 179
                 +  G  +          E I             +  +           L+ +E 
Sbjct: 119 FDSASNSIGGMGLACRSETCRGLEDIGRVVLFALYFQEAYSRIAVPFLHDEDGVLSRQEG 178

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +CL    DG    +IA++L L    V   L     KLDA +  QA+A A   G +
Sbjct: 179 ACLGWISDGLDVAQIAQRLALPEAEVQQLLEQVLHKLDASSLPQAVAHAFAGGLL 233


>gi|218672192|ref|ZP_03521861.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 233

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 74/217 (34%), Gaps = 3/217 (1%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +    +  L  +       +  L    S  D   +   +    +         +    
Sbjct: 17  AGTRGLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKP--LLIESSLPAAYVRDFDRANM 74

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             G  F        +P+ W  + +    ++       L       AG+A P      +  
Sbjct: 75  MRGCPFGLRLRESAVPLAWH-LNDAVNGQAFPAELRALMLHHAIPAGVAMPTIAVDGRRL 133

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
              F  E   L    + E        +  +  + +   S    L+ RE   ++    G T
Sbjct: 134 VFWFCGERAALGQSEVNELAIIILHALDAYNTVRRNEESVHNALSARELEVVRWTAQGKT 193

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S EI + L LS HTVNAY+ +A  KLD VNR Q +AK
Sbjct: 194 SIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAK 230


>gi|224552918|gb|ACN54698.1| PagR [Pantoea agglomerans]
 gi|224552921|gb|ACN54700.1| PagR [Pantoea agglomerans]
 gi|224552924|gb|ACN54702.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N + +  DI       + D  +      +    W++    +   +  ++          F
Sbjct: 28  NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIF 86

Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173
            G  FP+    +    +   S +   +  E    +       +    L L+ + +     
Sbjct: 87  QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLINLHQKTLNLYSQHNQKKNV 146

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+  G G T  E+A  L ++  TV  ++G+   KL   N   A+       
Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206

Query: 233 YI 234
            +
Sbjct: 207 LL 208


>gi|224552936|gb|ACN54710.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 4/182 (2%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N + +  DI       + D  +      +    W++    +   +  ++          F
Sbjct: 28  NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFYWENNVILSGGYNLTRIFNESFQ-YNIF 86

Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN 173
            G  FP+    +    +   S +   +  E    +      ++    L L+ +       
Sbjct: 87  QGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLTKLHQKTLNLYSQHHQKKNV 146

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+  G G T  E+A  L ++  TV  ++G+   KL   N   A+       
Sbjct: 147 FLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGTELR 206

Query: 233 YI 234
            +
Sbjct: 207 LL 208


>gi|307296697|ref|ZP_07576516.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877826|gb|EFN09051.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 9/220 (4%)

Query: 19  PRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             +  I   +  R++A ++ ++              + +Y  D  +          D   
Sbjct: 3   DLMAEITKAMGFRHYALVHHVDLKPAV-----RSVHIVDYPQDWVERFQARRLYASDPIH 57

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-S 136
              +   +   W ++Q    + ++ +  +          G   P  +    NG   F  +
Sbjct: 58  RASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPGELNGSCSFAMA 117

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194
              ML +  +               ++ +  +  +   +LTER+  C+ L   G T  EI
Sbjct: 118 AGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECVALVARGKTDWEI 177

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ LG+   TV  ++  A  +     R     +A+  G I
Sbjct: 178 SQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 217


>gi|220933015|ref|YP_002509923.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
 gi|219994325|gb|ACL70928.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
          Length = 211

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+L   G ++++IA++L +S  TV  ++ +   KL   +R QA+  A++ G
Sbjct: 147 ELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVSNILRKLSVNDRTQAVIVALKRG 206

Query: 233 YI 234
            +
Sbjct: 207 LV 208


>gi|224552975|gb|ACN54736.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
            +Y           Q  I    N + +  DI       + D  +      +    W++  
Sbjct: 9   VIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNV 65

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEV-IIEAHG 151
             +   +  ++          F G  FP+    +    +   S +   +  E    +   
Sbjct: 66  ILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++    L L+ +        L+ RE   L+  G G T  E+A  L ++  TV  ++G
Sbjct: 125 FLVKLHQKTLNLYSQHHQKKNVFLSPRECQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N   A+        +
Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208


>gi|153011539|ref|YP_001372753.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
 gi|151563427|gb|ABS16924.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
          Length = 260

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 78/230 (33%), Gaps = 10/230 (4%)

Query: 15  QELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R+    Y              +  +           +       
Sbjct: 22  SDTLALLTRIRDEIGCRHIMHTYRGRMGDCTKTTSSDLTVVMTVPTSWTARYSTKNYFVI 81

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        +F +    I+    ++     S  +L    E   L    +A   R      
Sbjct: 82  DPIFQEDAPYFQNDASGIVRDLQEDANECPSIAELLQDAEKHGLGNIFVAVSARSQKGAV 141

Query: 130 GYVIFTSEFLMLANEVIIEAHGA-----CYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G  +F  E     +     A           +I   L   K  ++ A  LT RE  CL+ 
Sbjct: 142 GCTLFMFEMSPDEDREQFVAKLRPRLLSLSGIIHSALCGCKDVATVASLLTPREVDCLRW 201

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 202 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 251


>gi|300311730|ref|YP_003775822.1| LuxR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074515|gb|ADJ63914.1| LuxR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 59/223 (26%), Gaps = 19/223 (8%)

Query: 23  LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82
            +   + A  FA YT +        +       N D  +          Y D   F    
Sbjct: 37  RLLKLLDADYFASYTWDD----DNHRFGNTVSVNMDPANLANY-ERYYQYCDPITFELQR 91

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142
             +P +   +     +    +             G+      G    G +          
Sbjct: 92  LSVPTLVTQVMPMEQL-RRTEFFNDFLARDGLCFGVNMFAYDGDRNIGDIRIWRSARREN 150

Query: 143 NE-------------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
            +               +    A                     L+ERE+   Q    G 
Sbjct: 151 FDRDALKLLALIRPAFTLALQRARAHCSAAAASPDAGALLTPTPLSERESHLAQCICRGL 210

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           + +EIA +L +   TV  ++     KL+  NR Q + + I  G
Sbjct: 211 SDKEIARELHIEFSTVRTHITRIFKKLNVGNRTQLVKRLIDGG 253


>gi|83593270|ref|YP_427022.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576184|gb|ABC22735.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 254

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 12/221 (5%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
                 + +   + S        +    + ++D    D  +       D  +        
Sbjct: 6   EAAGVPHVSYGALFSPHYRSDPGRETVYMSHFDQAFLDRYSQAGHLSHDTAVQWVFRFSQ 65

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145
           P+ W + +    +                  G++ PVR G   +   +F S   +  ++ 
Sbjct: 66  PVPWVTPRRLAELSERQIRVWEEGEAFGVRNGLSVPVRFGRDGSAGGLFFSATGLGDDDW 125

Query: 146 ----------IIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEE 193
                     ++      ++ +  F     + +      +LT RE   L  +  G    E
Sbjct: 126 RGILTDKGATLVALAYTFHEAMERFPLFSTRVNPQDHVIHLTNRERESLIWSARGCQVGE 185

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +A++LG++  T   +LG+A  KL A    QA+A+A+  G +
Sbjct: 186 VADRLGVADRTAEHHLGAARRKLMARTTAQAVARALAMGLL 226


>gi|332981237|ref|YP_004462678.1| LuxR family two component transcriptional regulator [Mahella
           australiensis 50-1 BON]
 gi|332698915|gb|AEE95856.1| two component transcriptional regulator, LuxR family [Mahella
           australiensis 50-1 BON]
          Length = 217

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT+RE   L L   G ++ EIA+KL +S  TV  +L S   KL+  +R QA   AI+ 
Sbjct: 155 DDLTQREREVLALVAKGLSNGEIAKKLFISEKTVKNHLSSIFRKLNVSDRTQAAVYAIKH 214

Query: 232 GY 233
           GY
Sbjct: 215 GY 216


>gi|333004174|gb|EGK23706.1| regulatory protein sdiA [Shigella flexneri K-272]
 gi|333017786|gb|EGK37093.1| regulatory protein sdiA [Shigella flexneri K-227]
          Length = 208

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 13/202 (6%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAAHAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLS 201
             L+   +G TS EIA  L ++
Sbjct: 186 EILKWTAEGKTSAEIAMILSIT 207


>gi|221369733|ref|YP_002520829.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|221162785|gb|ACM03756.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
          Length = 212

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 10/209 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           + + +    F  +++               L  +  +     +       D  L +  +G
Sbjct: 1   MNDAVVGLGFQTFSLAYQRPHALEAVTAPYLTTWPCEKDGACDPASARIRDPLLDYAVTG 60

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
           + P+IW+S   +++   + ++      G    AG+  P+     + G +   S       
Sbjct: 61  VKPLIWRSGSWKSL---NRKVRFPCLRGSEARAGLIVPLPDQRGRIGAITMLSAQREDYP 117

Query: 144 EVIIEAHGA-CYQVITDFLELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAE 196
           E I EA       V+     L     + +  L      + R+   L     G ++ EIA 
Sbjct: 118 EDIAEAGRIVALAVLVRAGSLAPAVGAVSPALASLAQLSPRQIEILDWIAHGKSNSEIAL 177

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            LGLS   V  ++     KLD  +R QA+
Sbjct: 178 ILGLSRRNVTYHVSEILKKLDVTSRTQAV 206


>gi|239834457|ref|ZP_04682785.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301]
 gi|239822520|gb|EEQ94089.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301]
          Length = 260

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 12/231 (5%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIETYG 73
            +    L  I++ I  R+          D  +     +  +     +     +       
Sbjct: 22  SDTLALLTRIRDEIGCRHILHTYRGRMGDCSKTSSSDLTVVMTVPANWAARYSTKNYFVV 81

Query: 74  DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
           D        +F   +  I+    ++     +   +    E   L    IA   R      
Sbjct: 82  DPIFQEDAPYFKDDVSGIVRNLQEDADQCPAVADMLQDAEKHGLGNIFIAVSARGQKGAV 141

Query: 130 GYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           G  +F+       +      ++          + +      K  ++ +  LT RE  CL+
Sbjct: 142 GCSLFSFEISPDEDREQFVAKLRPRLLSLSGIIHSALC-GCKDVATVSSLLTPREVDCLR 200

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +G T  EIAE L ++  TV  YL +A +KL+  NR  A+A A+  G I
Sbjct: 201 WAANGKTDGEIAEILNIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 251


>gi|89068253|ref|ZP_01155663.1| transcriptional regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89046170|gb|EAR52228.1| transcriptional regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 202

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 20/203 (9%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
           +   +     FP  +     ++    +  D          D  +    +    I W  I 
Sbjct: 18  SYLALRVGFAFPLEE-----VNRLPPEWVDHYTAKGLMLADPAMRWIYANTGAIRWSEIA 72

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHG 151
            +  ++      +          G+A  +       +  + +F        +  +     
Sbjct: 73  LDDPLQ-----VLAQARSFGLRYGLAVSLHDDTPLGQRSFGLFARADREFDDSEVALLTL 127

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                        ++R   + NLT  E   L++  DG   ++IA +LG+S   V   L +
Sbjct: 128 Y-------LTRRHEERMPPS-NLTAAELEALRMVKDGQRVKQIAHELGVSEGAVKQRLKN 179

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
           A  KL+A    QA   A  FG I
Sbjct: 180 AKRKLNAATSAQAATMATEFGLI 202


>gi|254293153|ref|YP_003059176.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041684|gb|ACT58479.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC
           49814]
          Length = 248

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 3/181 (1%)

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
           +                D        G     W  +     +  +G   +          
Sbjct: 61  WPKVWARHYADQRYFEVDPVFESLLKGFDAGYWDELVSNLPVSQAGLKVMEDAAAHGYAD 120

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA---ARN 173
           G +  +         V    + L+    V I    A  + + + + L  +R        +
Sbjct: 121 GYSRLIPTLNGSYYLVSLYGKTLVRDPNVRILFDLASIKFVHEGVMLLNRRVGTPLKDHD 180

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+R+   LQ   +G T ++ A++LG+SV  V  +L     +++A    QAI  A   G 
Sbjct: 181 LTKRQIEVLQAKANGQTDKQTADRLGVSVKAVEGHLTKIRKQMNARTTSQAIGLARGKGL 240

Query: 234 I 234
           I
Sbjct: 241 I 241


>gi|163734137|ref|ZP_02141578.1| Transcriptional activator protein RaiR, putative [Roseobacter
           litoralis Och 149]
 gi|161392673|gb|EDQ17001.1| Transcriptional activator protein RaiR, putative [Roseobacter
           litoralis Och 149]
          Length = 154

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 8/154 (5%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV- 145
           + W+ +   +    + +      G  L   G + P+R    +       +       E  
Sbjct: 1   MDWKRLDWSSKAARAFRAEAATFG--LGNQGYSIPIRGPNGQFALFTVNTSCDDEEWEEF 58

Query: 146 ----IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
                 E     +      LE    ++   +++L+ RE   + L   GY+  ++AE L +
Sbjct: 59  TESNRRELILIAHYFNQKALEFEPNKTPEQSQSLSPREVDAMTLLAIGYSRAQVAETLSI 118

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S HT+  Y+ SA  KL A N   A+A+A+  G I
Sbjct: 119 SEHTLRVYIESARFKLGAANTTHAVARALSRGLI 152


>gi|116255188|ref|YP_771022.1| putative LuxR-type transcriptional regulator protein TraR
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259836|emb|CAK02931.1| putative LuxR-type transcriptional regulator protein TraR
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 234

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 12/222 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  +  R +   +    +               + N   D       L     +  
Sbjct: 21  LKAALADLAERFEFSGYDYAKLLPG--------DFYVISNLHPDWLKRSRKLDLDRRNPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +          IW    +        Q            +GI  P+ +       + F S
Sbjct: 73  MKRAQQTRRAFIWSGTPQTGTPLEEDQTFYETAAQFGIRSGITIPIAISSGAISVLSFVS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
              +L  +  I+   A   V      + + + + +      L+ +E +  +    G T E
Sbjct: 133 PKSILTAQDEIDPIAASSAVGQLHARIGQLKVTPSIQESFYLSPKEGTYTRWLSLGKTVE 192

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + A+   +  +TV   L  A  + D  N  Q +A AIR G I
Sbjct: 193 DTADIEQVKYNTVRIALAEARRRYDLCNNTQLVALAIRRGLI 234


>gi|125973782|ref|YP_001037692.1| two component LuxR family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|256004513|ref|ZP_05429492.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 2360]
 gi|281417939|ref|ZP_06248959.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum JW20]
 gi|125714007|gb|ABN52499.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum ATCC 27405]
 gi|255991518|gb|EEU01621.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 2360]
 gi|281409341|gb|EFB39599.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum JW20]
 gi|316940025|gb|ADU74059.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 1313]
          Length = 216

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + +K      +LT RE   L+L   G  ++EIA++L +S  TV  ++ +   KL+  +R 
Sbjct: 144 VNEKAKKTENDLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKLNVSDRT 203

Query: 223 QAIAKAIRFGY 233
           QA   A +   
Sbjct: 204 QAAIYAYKHNI 214


>gi|50120496|ref|YP_049663.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611022|emb|CAG74467.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 245

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 62/200 (31%), Gaps = 19/200 (9%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108
           +  + NY  +  D        + D  +    + + P  W   ++  VI S  + S    L
Sbjct: 44  VVIISNYPQEWVDTYKENNYQHIDPVILTAINTVSPFSW---EDNIVINSKLKFSKIFNL 100

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIE-----AHGACYQVITDFLE 162
                   G  F +    +    +     E      E I+E                   
Sbjct: 101 SKEYDIVNGYTFVLHDNNNHLAALSIMFEEHAPTDMESIVEENKDKLQMLLIATHEKITT 160

Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           L          K+       ++RE   L  A  G T  EIA  L + + TV  ++G+   
Sbjct: 161 LYKEMTQSPQSKKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVK 220

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL  +N   AI   +    I
Sbjct: 221 KLGVLNAKHAIRLGVELQLI 240


>gi|261418763|ref|YP_003252445.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297531272|ref|YP_003672547.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319765579|ref|YP_004131080.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375220|gb|ACX77963.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|297254524|gb|ADI27970.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
 gi|317110445|gb|ADU92937.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 210

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178
                Y++ TS+   +A+ +    HG          +V+ ++ +  ++       LT RE
Sbjct: 96  AGATSYLLKTSKASEIADAIRATFHGQSVFEPEVAGKVMRNYRKQEERL--PHEQLTSRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L   G T++E+A++L +S+ TV  ++ +   KL   +R QA+  A R G +
Sbjct: 154 MEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209


>gi|238783332|ref|ZP_04627356.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970]
 gi|238715755|gb|EEQ07743.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970]
          Length = 238

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 11/210 (5%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            F+ ++      +P  +  I    NY+     +         D  +F+     +P + + 
Sbjct: 33  GFSFFSFVIREIYPITESRIYTFDNYNDSWRTLYEKNKLWKIDPVIFY---KPMPQL-EY 88

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
              +++     +            +GI F + L    +  +  ++    +  + I  A  
Sbjct: 89  AVWDSLFFKGHEEIWAYGVEYGYQSGITFGMPLPQGYHSILSLSNMSHSITPKEISLAQS 148

Query: 152 ACYQV-----ITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              ++      +  L      +    N  LT+RE   L  + DG TS EIA K+ +S  T
Sbjct: 149 YFSKICVKIINSIILNAESPITFNKNNITLTKRELMILMFSVDGMTSHEIAGKIFISKST 208

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V+ ++ +   KL+  N+ QAI+KA+  G I
Sbjct: 209 VDFHMLNIIKKLNCKNKFQAISKALIMGLI 238


>gi|289165996|ref|YP_003456134.1| Transcriptional regulator, LuxR family with an autoinducer-binding
           domain [Legionella longbeachae NSW150]
 gi|288859169|emb|CBJ13099.1| Transcriptional regulator, LuxR family with an autoinducer-binding
           domain [Legionella longbeachae NSW150]
          Length = 248

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 9/226 (3%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +  S+ EL+  L      I  ++FA +T  +       + +                   
Sbjct: 11  EVKSIHELNTLLKNYFWSISIKSFA-FTYYNQHTKTGSKLVYEWATTPLDAWHKYYLQEG 69

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG-QLSVRLEGGLLPFAGIAFPVRLGFHK 128
               D  L      LLPI W   ++  + ++   +   +         G+  P+     +
Sbjct: 70  YADIDRTLEATEQSLLPIFWDVKEQLRLAKNKRMRRFKQESLIFGLDKGLCIPLHGPKGE 129

Query: 129 NGYVIF---TSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              ++     +E  +   E  ++              L L +K+      LT+RE  CL+
Sbjct: 130 FVILVLHQRINEHGLKNWENHVDTWLGILHTYFHFLRLLLNEKKIGVV-PLTKREQECLR 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           L  +G+  E IA+ L +S  TVN +L +A  KL   N+      A+
Sbjct: 189 LTAEGFRLELIAQLLKISKRTVNFHLQNANKKLGVTNKY-LAIMAL 233


>gi|270159175|ref|ZP_06187831.1| LuxR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|269987514|gb|EEZ93769.1| LuxR family transcriptional regulator [Legionella longbeachae
           D-4968]
          Length = 247

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 9/226 (3%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +  S+ EL+  L      I  ++FA +T  +       + +                   
Sbjct: 10  EVKSIHELNTLLKNYFWSISIKSFA-FTYYNQHTKTGSKLVYEWATTPLDAWHKYYLQEG 68

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG-QLSVRLEGGLLPFAGIAFPVRLGFHK 128
               D  L      LLPI W   ++  + ++   +   +         G+  P+     +
Sbjct: 69  YADIDRTLEATEQSLLPIFWDVKEQLRLAKNKRMRRFKQESLIFGLDKGLCIPLHGPKGE 128

Query: 129 NGYVIF---TSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              ++     +E  +   E  ++              L L +K+      LT+RE  CL+
Sbjct: 129 FVILVLHQRINEHGLKNWENHVDTWLGILHTYFHFLRLLLNEKKIGVV-PLTKREQECLR 187

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           L  +G+  E IA+ L +S  TVN +L +A  KL   N+      A+
Sbjct: 188 LTAEGFRLELIAQLLKISKRTVNFHLQNANKKLGVTNKY-LAIMAL 232


>gi|326317305|ref|YP_004234977.1| LuxR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374141|gb|ADX46410.1| transcriptional regulator, LuxR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 264

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 17/227 (7%)

Query: 24  IQNRIKARN--FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
               I      +    ++   +       + E  N       +         D       
Sbjct: 29  AAREIGFDAAIYDFSPVSMTPEGVLMTPSVLEYRNMPGPMRKLWVEQGMYQVDPVQALAL 88

Query: 82  SGLLPIIWQSIQEETVI-----ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--- 133
            G     W   Q+E  +     +   +    +        G+  P+ +  ++   +    
Sbjct: 89  RGSGAFFWSYHQDEESVLQPMLDGGARSVSSVLTEWRMTRGVTVPLHMPGNRFATLTAMW 148

Query: 134 ----FTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGD 187
               F  + + L  + ++      + +    L++F K   +     L++RE  C+ LA +
Sbjct: 149 QDDNFAQKKMSLV-DSVMRLAYMAHILNDHLLKVFTKIQLTPRDVALSDREHECVLLAAE 207

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G  S++IA +L  +  T+  +L SA  KL   NR Q IA+A  FGY+
Sbjct: 208 GMPSKQIAARLNRAESTIVFHLQSAARKLGGRNRAQMIARAAHFGYL 254


>gi|330981978|gb|EGH80081.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 229

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 9/218 (4%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++    +     +     +       L     N D   GD   
Sbjct: 21  TITELDGQAAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDDAWGDAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D  +  + + L  + WQ    +  + +       L         I++      
Sbjct: 75  QHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVTA---FYDALVDTCELLPAISYGYTNHC 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                V        +A  +  E       ++     + +     +R LT RE   LQ A 
Sbjct: 132 RGADSVTSVCTLGEVARPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           DG T+ EI+    +S  TV  +L +   KL   NR QA
Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQA 229


>gi|330961312|gb|EGH61572.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 240

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 11/229 (4%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  +      +   L  ++          Y     L       L     N D   G    
Sbjct: 21  TITELDGQTAVENALEWLRRECDCERAMFYQFKGPL------LLTFITSNVDDIWGKAYR 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL-LPFAGIAFPVRLG 125
                  D  + ++ + L  + WQ       + +    +V     L     G     R  
Sbjct: 75  HHELITQDPVIRYYRNHLGFMNWQDAFRLYPLSACYDEAVEASELLPAISYGYTSHCRGT 134

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                          +  E           ++     + +     +R LT RE   LQ A
Sbjct: 135 ESVTSVCTLAEVEKPINAEQ----KYLVSSLMPVMHSVARGLKFCSRGLTHRELETLQWA 190

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG  + EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 191 RDGKNAWEISVIRDISEATVKYHLKAIYAKLGVANRAQAVGEALCRGLI 239


>gi|229541561|ref|ZP_04430621.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229325981|gb|EEN91656.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 227

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   LQL  DG ++  I + L +S  TV  ++ +   KL   +R QA+  A
Sbjct: 159 PPLHLLTPRECEVLQLLADGKSNRAIGDALYISEKTVKNHVSNILQKLKVKDRTQAVVTA 218

Query: 229 IRFGYI 234
           I+ G++
Sbjct: 219 IKNGWV 224


>gi|148557255|ref|YP_001264837.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148502445|gb|ABQ70699.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 301

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 9/240 (3%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLD 60
           S   +  + S S+ E    LH     +         ++ A            ++  +   
Sbjct: 61  SSLVVGLEASRSMDEAMDVLHGAILELGFPRVVYGCVSIAHLPSGTWVPAPLQVRGFPDR 120

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIA 119
                        D +       +    W  +Q    +++ +    +     L    G+ 
Sbjct: 121 WDRDWPRHRAH--DPYAHTAFLKMESTNWTVVQNNADLLDPAQVDCISYINDLGLNPGLT 178

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL 174
            P+ +  H  G++    +  +   +   +                 +  F      +++L
Sbjct: 179 VPLFIPGHHYGFITAVGDGGLDGWDAAADRAGPTLAMIANYFDNFAIRRFGGPPKESQSL 238

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++RE  CL  +  G T E+IA  L LS  TV  YL     KLDAVNR  A+AKA+  G I
Sbjct: 239 SKRELECLTWSARGKTVEDIAVILDLSADTVRVYLKRVNQKLDAVNRSHAVAKAMCLGMI 298


>gi|332757226|gb|EGJ87563.1| regulatory protein sdiA [Shigella flexneri 2747-71]
 gi|333003265|gb|EGK22811.1| regulatory protein sdiA [Shigella flexneri K-218]
 gi|333017641|gb|EGK36953.1| regulatory protein sdiA [Shigella flexneri K-304]
          Length = 196

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 13/202 (6%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E    + L   +++   +  Y++      P  +  +    NY       
Sbjct: 2   LLRFQRMEAAEEAYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 58

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 59  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAAHAHGLRRGVTQYLML 113

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 114 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 173

Query: 180 SCLQLAGDGYTSEEIAEKLGLS 201
             L+   +G TS EIA  L ++
Sbjct: 174 EILKWTAEGKTSAEIAMILSIT 195


>gi|253687834|ref|YP_003017024.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754412|gb|ACT12488.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 245

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 63/200 (31%), Gaps = 19/200 (9%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108
           +  + NY  +  +        + D  +    + + P  W   ++  VI S  + S    L
Sbjct: 44  VVIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNL 100

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIE-----AHGACYQVITDFLE 162
                   G  F +    +    +     E      E I+E            V      
Sbjct: 101 SKEYDIVNGYTFVLHDNNNNLAALSIMFEEHSPTDIESIVEENKDKLQMLLITVHEKITT 160

Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           L          ++       ++RE   L  A  G T  EIA  L + + TV  ++G+   
Sbjct: 161 LYKEMTQSTQSRKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVK 220

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL  +N   AI   +    I
Sbjct: 221 KLGVLNAKHAIRLGVELQLI 240


>gi|32441931|gb|AAO38761.1| SwrR [Serratia liquefaciens]
          Length = 248

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 15/189 (7%)

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
           +  +        + D  L   +  + P  W     E            +        G  
Sbjct: 52  EWFEFYIKNNYQFIDPVLITASHRITPFTWDK-DLEIGAGLKLPKIFDMAKNYNIINGYT 110

Query: 120 FPVRLGFHKNGYVIFTSE-FLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAA-- 171
           F +    H    +    +       E  I+            +      L+++ S+ A  
Sbjct: 111 FVLHDHHHNLVVLSIMLDKHCDADVEQQIDNNKAEIQMLLITMHGKMTTLYQEMSTPADF 170

Query: 172 ------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                    ++RE   +  A  G + +EIA  LG+ + TV  ++G+A  KL   N   AI
Sbjct: 171 EKMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAI 230

Query: 226 AKAIRFGYI 234
              +    I
Sbjct: 231 RLGVELQLI 239


>gi|260466634|ref|ZP_05812822.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029640|gb|EEW30928.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 236

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 8/236 (3%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + ++   G + +S  +L+     +   I A ++ L  +    D    +       N+  D
Sbjct: 7   LLQSDTLGSRLTSRGDLTSFFMELTAEIGADSYMLVAMVHDQDRNDAR---IVSSNWIFD 63

Query: 61  SGDIP--NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
           + ++    ++             +   P++     +   + S  +   RL   L      
Sbjct: 64  AIELIGKRLIAGLAQGTLTVAPGTRPRPLVAAQAPDADGLVSGEE--ARLLDVLGHAEIY 121

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
           +  + +G  +   +   +    +    +++A   C   ++   +L    ++    L++RE
Sbjct: 122 SLRLNVGRQRLFALFSAASAGKIDQPALMKAQLKCCYALSHIPQLI-AAAAMQDPLSDRE 180

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             CL    +G T++E+A  LG+S +TVN+Y+  A  K  A NR  AIA AIR G I
Sbjct: 181 RECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGII 236


>gi|304405086|ref|ZP_07386746.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345965|gb|EFM11799.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 227

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++  F +  +  + A   LTERE   L+L   G +++EIA+ L + + TV  ++ +
Sbjct: 143 VAAKMMNRFRQPQQTTAKAHEQLTEREMDVLKLVAQGKSNQEIADDLFIGIKTVKFHVTN 202

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL   +R QA   A + G 
Sbjct: 203 IFSKLGVDDRTQAAIYAHKQGL 224


>gi|13472561|ref|NP_104128.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023307|dbj|BAB49914.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 265

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 95/236 (40%), Gaps = 8/236 (3%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + ++   G + +S  +L+     +   I A ++ L  I    D    +       N+  D
Sbjct: 36  LLQSDTLGSRLTSRGDLTSFFMELTAEIGADSYMLVAIVHDQDRNDAR---IVSSNWIFD 92

Query: 61  SGDIP--NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
           + ++    ++                 P++     +   + S  +   RL   L      
Sbjct: 93  AIELIGKRLIASLAQGALTVAPGIRPRPLVAARAPDADGLVSGEE--ARLLDVLGHAEIY 150

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
           +  + +G  +   +   +    +    +++A   C   ++   +L    ++    L++RE
Sbjct: 151 SLRLNVGRQRLFALFSAATSGQIDQPALMKAQLKCCYALSHIPQLI-AAAAMQDPLSDRE 209

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             CL    +G T++E+A  LG+S +TVN+Y+  A  K  A NR  AIA AIR G I
Sbjct: 210 RECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGII 265


>gi|30063360|ref|NP_837531.1| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri
           2a str. 2457T]
 gi|56480001|ref|NP_707803.2| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri
           2a str. 301]
 gi|110805889|ref|YP_689409.1| ftsQAZ gene transcriptional regulator cluster [Shigella flexneri 5
           str. 8401]
 gi|30041612|gb|AAP17340.1| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri
           2a str. 2457T]
 gi|56383552|gb|AAN43510.2| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri
           2a str. 301]
 gi|110615437|gb|ABF04104.1| Regulatory protein sdiA [Shigella flexneri 5 str. 8401]
 gi|281601358|gb|ADA74342.1| Regulatory protein SdiA [Shigella flexneri 2002017]
 gi|313650133|gb|EFS14546.1| regulatory protein sdiA [Shigella flexneri 2a str. 2457T]
 gi|332757474|gb|EGJ87809.1| regulatory protein sdiA [Shigella flexneri K-671]
 gi|332766648|gb|EGJ96852.1| autoinducer binding domain protein [Shigella flexneri 2930-71]
          Length = 208

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 13/202 (6%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E    + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMEAAEEAYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAAHAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLS 201
             L+   +G TS EIA  L ++
Sbjct: 186 EILKWTAEGKTSAEIAMILSIT 207


>gi|21654819|gb|AAK76734.1| quorum sensing regulator SprR [Serratia proteamaculans]
          Length = 249

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 54/202 (26%), Gaps = 16/202 (7%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107
              +  + +Y  +  D+  +      D  +        P  W             +    
Sbjct: 41  PSDVLIISSYPDEWVDLYRVNNFQLTDPVILTAFKRTSPFTWDENITLMSDLKFTK-IFS 99

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFL 161
           L        G  F +    +    +                +            +     
Sbjct: 100 LSKRYNIVNGFTFVLHDHMNNLALLSVIIDNNKQGALEERLSSERGTMQMLLIDINEQMY 159

Query: 162 ELFKKRSSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            L    SS+ +           T RE   L  A  G T  EIA    +S+ TV  ++G+ 
Sbjct: 160 RLAGSVSSSRQRHHADEDKPIFTPRENEVLYWASMGKTYGEIATIASISLSTVKFHMGNI 219

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
            VKL   N  QAI   +    I
Sbjct: 220 VVKLGVSNARQAIRLGVELELI 241


>gi|126735985|ref|ZP_01751729.1| transcriptional regulator, LuxR family protein [Roseobacter sp.
           CCS2]
 gi|126714542|gb|EBA11409.1| transcriptional regulator, LuxR family protein [Roseobacter sp.
           CCS2]
          Length = 202

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 16/200 (8%)

Query: 35  LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE 94
              +     FP  +     ++ +                D  +      +  I W  +  
Sbjct: 19  YIALRIGFAFPMEE-----VNAFPQGWIAHYTKQRFMLFDPVVKWAYGNVGTIRWFKL-- 71

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
               E   +  +          G+   V            +          +        
Sbjct: 72  ---AEDDPKRIIAQAQTFGMRFGVTVSVFDSSADAQRSFASFTRSDRDYTDLE------V 122

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++  +L      ++   NLT+ E   L +  DG   +EIA +L +S   V   L +A +
Sbjct: 123 KLLLAYLTRRHNETAPPTNLTKAELEALGMVKDGKRLKEIAFELSVSEGAVKQRLKNAKL 182

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A    QA A A ++G I
Sbjct: 183 KLGAKTGTQAAALANQYGLI 202


>gi|56418969|ref|YP_146287.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56378811|dbj|BAD74719.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 210

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178
                Y++ TS+   +A+ +    HG          +V+ ++ +  ++       LT RE
Sbjct: 96  AGATSYLLKTSKASEIADAIRATFHGQSVFEPEVAGKVMRNYRKQEERL--PHEQLTSRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L   G T++E+A++L +S+ TV  ++ +   KL   +R QA+  A R G +
Sbjct: 154 MEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209


>gi|144228246|gb|ABO93630.1| PagR [Pantoea agglomerans pv. gypsophilae]
 gi|163676290|gb|ABY40374.1| PabR [Pantoea agglomerans pv. betae]
          Length = 230

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 11/218 (5%)

Query: 24  IQNRIKARNFAL----YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
           IQN + A         Y           Q  I    N + +  DI       + D  +  
Sbjct: 15  IQNELNAFFEDYKGIIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQ 71

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EF 138
               +    W++    +   +  ++          F G  FP+    +    +   S + 
Sbjct: 72  SLRCVEDFFWENNVILSGGYNLTRIFNESFQ-YNIFQGQTFPLHDYLNNLALLSIISQKD 130

Query: 139 LMLANEV-IIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAE 196
             +  E    +      ++    L L+ +        L+ RE   L+  G G T  E+A 
Sbjct: 131 SGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAV 190

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L ++  TV   +G+   KL   N   A+        +
Sbjct: 191 ILSIAERTVKFLMGNVMKKLGVNNATHAVKLGTELRLL 228


>gi|89055684|ref|YP_511135.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865233|gb|ABD56110.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 243

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 62/224 (27%), Gaps = 8/224 (3%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
                 + +          T+  A   P  +       N      D          D FL
Sbjct: 19  RAVWAGMAHLADDLGMPFCTLTMARRAPDLRSSQFI-TNLPAPFQDTYCEGGFINDDPFL 77

Query: 78  FHFNSGLLPI-IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF----HKNGYV 132
                 +          +    +      + L         +  PVR             
Sbjct: 78  SLICRDMTAAGFMTDPDDLPEADQRQGAFLDLTRSFGVGTALCIPVRTTRQSEFGGWVIG 137

Query: 133 IFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
                  +     I       A          L ++ + A R L+ RE  CLQ    G  
Sbjct: 138 GDLRARDVADGREIAAMQLQLAGLIAFERLSVLTRQANHAHRRLSPRERECLQWLSAGLR 197

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +IA +L +S   V+ Y+ +A  K  A  R QA+A AI  G I
Sbjct: 198 VTQIAHRLDISESAVHLYIKNARRKFGARTREQAVAHAIVSGEI 241


>gi|261420477|ref|YP_003254159.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768147|ref|YP_004133648.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261376934|gb|ACX79677.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317113013|gb|ADU95505.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 391

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 32/247 (12%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
              ++ + +E +  +           F  ++  +   F  ++     LH + +D+G I  
Sbjct: 157 WILRAQTFEESAAHI-----CFGFSYFLPFSRCALFQFVNQESTAIGLHGHGVDNGQIQR 211

Query: 67  ILIETYGDDFLF----------HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
           + +E      L           H      PI         V  +S Q            +
Sbjct: 212 LRVELDSIPMLKESVGKLKAEVHEFRHFRPIY--------VPRASEQFPRLYVDPFGLAS 263

Query: 117 GIAFPVRLGFH---------KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
            +  PV +              G   F +    L   ++     A   ++       K+ 
Sbjct: 264 LVIVPVYVPTEGRMIGGVVLDRGPGRFFAVDRRLFPALMKFGQSAGELLLKWIKAPKKEW 323

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              A +L+ RE   L+L  DG ++ E A +L LS  TV  Y+ SA  KL+A NR +A+AK
Sbjct: 324 EGMAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAK 383

Query: 228 AIRFGYI 234
           A+R G I
Sbjct: 384 ALRLGLI 390


>gi|110224491|emb|CAJ86500.1| quorum-sensing transcriptional regulator [Serratia marcescens]
          Length = 248

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 15/189 (7%)

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
           +  +        + D  L   +  + P  W     E            +        G  
Sbjct: 52  EWFEFYIKNNYQFIDPVLITASHRITPFTWDK-DLEIGSGLKLPKIFDMAKNYNIINGYT 110

Query: 120 FPVRLGFHKNGYVIFTSE-FLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAA-- 171
           F +    H    +    +       E  I+            +      L+++ S+ A  
Sbjct: 111 FVLHDHHHNLVVLSIMLDKHCDTDVEQQIDNNKAEIQMLLITMHGKMTALYQEMSTPADF 170

Query: 172 ------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                    ++RE   +  A  G + +EIA  LG+ + TV  ++G+A  KL   N   AI
Sbjct: 171 EKMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAI 230

Query: 226 AKAIRFGYI 234
              +    I
Sbjct: 231 RLGVELQLI 239


>gi|333003004|gb|EGK22558.1| regulatory protein sdiA [Shigella flexneri VA-6]
          Length = 208

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 13/202 (6%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++      Y++         +  +    NY       
Sbjct: 14  LLRFQRMEAAEEVYHEIELQAQQLEYD---YYSLCVRHPVLFTRPKVAFYTNYPESWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L              +     + S  Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVL-----NPENFSQDHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERET 179
                G++ F    T E  +L++E+ ++      + +   + L  +   +   N ++RE 
Sbjct: 126 PNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREK 185

Query: 180 SCLQLAGDGYTSEEIAEKLGLS 201
             L+   +G TS EIA  L ++
Sbjct: 186 EILKWTAEGKTSAEIAMILSIT 207


>gi|297528821|ref|YP_003670096.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252073|gb|ADI25519.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 391

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 32/247 (12%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
              ++ + +E +  +           F  ++  +   F  ++     LH + +D+G I  
Sbjct: 157 WILRAQTFEESAAHI-----CFGFSYFLPFSRCALFQFVNQESTAIGLHGHGVDNGQIQR 211

Query: 67  ILIETYGDDFLF----------HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
           + +E      L           H      PI         V  +S Q            +
Sbjct: 212 LRVELDSIPMLKESVGKLKAEVHEFRHFRPIY--------VPRASEQFPRLYVDPFGLAS 263

Query: 117 GIAFPVRLGFH---------KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
            +  PV +              G   F +    L   ++     A   ++       K+ 
Sbjct: 264 LVIVPVYVPTEGRMIGGVVLDRGPGRFFAVDRRLFPALMKFGQSAGELLLKWIKAPKKEW 323

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              A +L+ RE   L+L  DG ++ E A +L LS  TV  Y+ SA  KL+A NR +A+AK
Sbjct: 324 EGMAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAK 383

Query: 228 AIRFGYI 234
           A+R G I
Sbjct: 384 ALRLGLI 390


>gi|84517329|ref|ZP_01004683.1| transcriptional regulator, LuxR family [Loktanella vestfoldensis
           SKA53]
 gi|84508809|gb|EAQ05272.1| transcriptional regulator, LuxR family [Loktanella vestfoldensis
           SKA53]
          Length = 202

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 16/200 (8%)

Query: 35  LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE 94
              +     FP  +      +    D  D          D  +    S +  I W  I  
Sbjct: 19  YIALRIGFAFPIEE-----TNALSSDWIDHYTKQRFMLYDPTVRWAYSNVGCIRWSEITL 73

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
           +       +  +          G+   V          + +          +        
Sbjct: 74  DDP-----KRVLAQARSFGMRYGLTVSVFDASKDQQRSLASFTRSDREFSTLEA------ 122

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++  +L      ++   NLT+ E   L +  DG   +EIA +L +S   V   L +A +
Sbjct: 123 KLLQVYLTRRHTETAPPTNLTKAEIEALGMIKDGRRLKEIAFQLKVSEGAVKQRLKNAKL 182

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A    QA A A ++G I
Sbjct: 183 KLGAKTGTQAAALASQYGLI 202


>gi|227115411|ref|ZP_03829067.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 245

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 19/200 (9%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108
           +  + NY  +  +        + D  +    + + P  W   ++  VI S  + S    L
Sbjct: 44  VVIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNL 100

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIE-----AHGACYQVITDFLE 162
                   G  F +    +    +     E      E I+E            V      
Sbjct: 101 SKEYDIVNGYTFVLHDNNNHLAALSIMFEEHAPTDMENIVEENKDKLQMLLIAVHEKITT 160

Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           L          K+       ++RE   L  A  G T  EIA  L + + TV  ++G+   
Sbjct: 161 LYKEMTQSTQSKKQGEKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVK 220

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL  +N   AI   +    I
Sbjct: 221 KLGVLNAKHAIRLGVELQLI 240


>gi|116495146|ref|YP_806880.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191638654|ref|YP_001987820.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus
           casei BL23]
 gi|227534839|ref|ZP_03964888.1| LuxR family response regulator [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239632026|ref|ZP_04675057.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066710|ref|YP_003788733.1| CitB family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116105296|gb|ABJ70438.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712956|emb|CAQ66962.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus
           casei BL23]
 gi|227187595|gb|EEI67662.1| LuxR family response regulator [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239526491|gb|EEQ65492.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439117|gb|ADK18883.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382696|gb|AEA54172.1| two component transcriptional regulator, LuxR family [Lactobacillus
           casei LC2W]
 gi|327385883|gb|AEA57357.1| two component transcriptional regulator, LuxR family [Lactobacillus
           casei BD-II]
          Length = 221

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   LQL   G +++EIA +L +++ TV  ++ +   KLD  +R QA   A
Sbjct: 142 PQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYA 201

Query: 229 IRFGYI 234
           ++ G +
Sbjct: 202 LKHGLV 207


>gi|258539885|ref|YP_003174384.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257151561|emb|CAR90533.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 221

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   LQL   G +++EIA +L +++ TV  ++ +   KLD  +R QA   A
Sbjct: 142 PQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYA 201

Query: 229 IRFGYI 234
           ++ G +
Sbjct: 202 LKHGLV 207


>gi|320184745|gb|EFW59537.1| DNA-binding transcriptional activator SdiA [Shigella flexneri CDC
           796-83]
          Length = 159

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 5/148 (3%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF----TSEFLMLANEVII 147
           +     + S  Q             G+   + L     G++ F    T E  +L++E+ +
Sbjct: 12  LMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQL 71

Query: 148 EAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +      + +   + L  +   +   N ++RE   L+   +G TS EIA  L +S +TVN
Sbjct: 72  KMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVN 131

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  +   K++A N+ Q    A   G I
Sbjct: 132 FHQKNMQKKINAPNKTQVACYAAATGLI 159


>gi|222102144|ref|YP_002546734.1| transcriptional regulatory protein [Agrobacterium radiobacter K84]
 gi|221728261|gb|ACM31270.1| transcriptional regulatory protein [Agrobacterium radiobacter K84]
          Length = 247

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 66/238 (27%), Gaps = 18/238 (7%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFAL------YTINSALDFPRRQQLI----CEL 54
            +T ++     ++  RL  + N ++AR             + A  +    +L       +
Sbjct: 7   DVTSEELRLFGDIVARLSRLDNDVEARTAVFEDIVKLVRADFAASYIWNDRLRRFEKGLI 66

Query: 55  HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114
           HN D ++          + D   F         + + +     +    +           
Sbjct: 67  HNMDPENIRNY-ERYYQFRDPHTFKLREKRKATLIEEVNPYNELIR-TEFYNDFLKRDGL 124

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI--IEAHGACYQVITDFLELFKKRSSAAR 172
             GI   +  G    G                  +        +        ++      
Sbjct: 125 HHGINVFLFEGDRDLGDFRLWRSAKSPDFSEREKMLLDTISPFLKKAMANGMERF----E 180

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           NLT RE     L   G    EI + L +   TV  +L  A  K    NR +  A  +R
Sbjct: 181 NLTPRERQIAFLVARGCRDREICDMLNIGFSTVRTHLNKAMEKKGCSNRAELAALIMR 238


>gi|258510526|ref|YP_003183960.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477252|gb|ACV57571.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 231

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              ++I +F    + R  ++ +   LTERE   LQ    G +++EIA  L +S +TV  +
Sbjct: 137 LAMKMIAEFSRTAETRMPSSESVTELTEREREVLQYLSAGASNKEIARALFISENTVRNH 196

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           +     KL   NR QA A A+R G 
Sbjct: 197 VRHILDKLHLSNRAQAAAYAVRNGI 221


>gi|322381417|ref|ZP_08055416.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154644|gb|EFX46919.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 208

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++  F    K  S+   +LTERE   L+L   G +++E+A++L + V TV  ++ +
Sbjct: 126 VATKIMNRF-RQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTN 184

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R QA   A + G +
Sbjct: 185 VLQKLGVEDRTQAAIYAFKHGIV 207


>gi|118592420|ref|ZP_01549812.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
 gi|118435078|gb|EAV41727.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
          Length = 241

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 60/213 (28%), Gaps = 12/213 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           E+ P + ++       +F       +   P          N D D+ +        + D 
Sbjct: 34  EVFPDILMLLRADVLASFEWDPRAGSYGNPFTI-------NQDPDNIERYRNW-YQFRDP 85

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
                         + +  +  +    +             G+   +     +   +   
Sbjct: 86  MTEKLRGLRRAAHVEEVISKPDL-RKTEFYNDFLARDGMHHGVNLFMLSSTRELADLRIW 144

Query: 136 SEFLMLANEVI-IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                       I+        +   L L  + S     LTERE     L   G   ++I
Sbjct: 145 RHRNRPDFGEREIDLLTIIGPFMRKALSLAPEVS--LDMLTERERDVALLIARGCFDKDI 202

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A  LG+   TV  +LG+   KL   NR +  A 
Sbjct: 203 ARVLGIGFATVRTHLGNCMTKLGCANRTELAAL 235


>gi|167463122|ref|ZP_02328211.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 214

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++  F    K  S+   +LTERE   L+L   G +++E+A++L + V TV  ++ +
Sbjct: 132 VATKIMNRF-RQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTN 190

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R QA   A + G +
Sbjct: 191 VLQKLGVEDRTQAAIYAFKHGIV 213


>gi|78060156|ref|YP_366731.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964706|gb|ABB06087.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 237

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 69/236 (29%), Gaps = 14/236 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICE------- 53
           +S + +T ++     ++  RL  +   +  R   L  I   L         C+       
Sbjct: 3   LSASDITPEELRLFGDIVARLEELGPVVDVRTVVLPAITQLLRADFAASFDCDEQTGLWR 62

Query: 54  ---LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
               +N D             + D       +  +      +     +E   +       
Sbjct: 63  NGFSYNVDPLQIARYEAW-FQHVDPVTSQLRARRVATCVDDVVNRRELE-QTEFYNDFLC 120

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                 GI      G    G +               +      +       L ++ + A
Sbjct: 121 RDGMHHGINVYAFDGATHVGDLRIWRAKGRPDFTGRDKLLLNGIEPFFRRALLRRRHACA 180

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
              LTERE+   +L   GYT +++A  LG+ V TV  +L     K    NR    A
Sbjct: 181 --GLTERESDVARLVAAGYTDKDVARTLGIGVPTVRTHLRRVMAKKGVANRASLAA 234


>gi|320333891|ref|YP_004170602.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755180|gb|ADV66937.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 228

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 42/87 (48%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
             H +  + + +     +  S     L+ RE   L++A  G T++EIA  L +S  TV  
Sbjct: 136 ALHPSVARKVLERFSTNQTPSPPEETLSPRELEVLRIAATGRTNKEIARDLDISPRTVQV 195

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L +   KL   +R +A+   I+ G+I
Sbjct: 196 HLANIFSKLGVGSRTEAVLYGIKRGWI 222


>gi|228924157|ref|ZP_04087433.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228835647|gb|EEM81012.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 214

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +++  L + +K    +    LT RE   LQL   G +++EIA  L ++  TV A++
Sbjct: 130 IANALLSQTLPVEEKEEEPSIVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHV 189

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   KL+  +R QA   A++ G +
Sbjct: 190 SSILSKLNLSDRTQAALYAVKNGIV 214


>gi|220932804|ref|YP_002509712.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
 gi|219994114|gb|ACL70717.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
          Length = 209

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 140 MLANEVIIEAHGACYQ--------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
               E ++EA  A  +        V    ++   ++      LT RE   L     G ++
Sbjct: 105 DSRPEKLVEAIKAARRGEPVLTPGVAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSN 164

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +IA+ L +S  TV  ++ +   KLD  +R QA+ KAI    +
Sbjct: 165 RDIAKTLCISETTVKTHVSNILKKLDVKDRTQAVIKAIENNLV 207


>gi|319650145|ref|ZP_08004294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317398326|gb|EFV79015.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 212

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              +K      +LTERE   L   G+G T++EI+E+L + + TV  ++ +   KL   +R
Sbjct: 136 RFREKEKKPHDDLTEREFDVLLCIGEGMTNQEISEELFIGIKTVKTHVSNILSKLGVTDR 195

Query: 222 IQAIAKAIRFGYI 234
            QA   A R G I
Sbjct: 196 TQAAVYANRNGII 208


>gi|296162419|ref|ZP_06845211.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295887338|gb|EFG67164.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 333

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 16/227 (7%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             R+  ++ RI+   F  ++ ++       + +                       D  +
Sbjct: 102 QDRIEFVRQRIRQLGFDSFSYSATRTSAHHKTMFVLTSYESQSWLTRYFRERYFELDPRV 161

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131
              +   +P +W +      +  +   S      + +       +GI   + L   +   
Sbjct: 162 ALASPTGMPFLWNTADMRADLPRAQMRSERLGGLIDMLEATGRKSGILTQMPLPEPELSA 221

Query: 132 VIFTSEF--------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181
            +  +            +  E ++ AH     + T    +     +  + +T  E     
Sbjct: 222 SLCFNSETGNPRWMTESIVAETLMFAHMIHEFIWTHAKSVIGIAPAQQQRVTLSELQHAV 281

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L+    G   +EIA  LGLS H V+ +L       +  NR+Q I  A
Sbjct: 282 LRAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328


>gi|295704610|ref|YP_003597685.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802269|gb|ADF39335.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 212

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 40/79 (50%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            ++T   +  +K+ +   +LT+RE   L+    G +++EI   L ++  TV  ++ +   
Sbjct: 133 HLLTRLTKSSEKKVNFIDHLTKREKDVLKEIAKGKSNKEIGAALHITEKTVKTHVSNILS 192

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   +R QA   A++ G 
Sbjct: 193 KLGVQDRTQAALYAVQHGI 211


>gi|82940562|emb|CAJ44291.1| putative transcription regulator protein MotR, LuxR family
           [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 18/225 (8%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69
           +S   L   L  + + + A ++ L   +                ++  D       +++ 
Sbjct: 40  TSSGRLQSGLRALTDYVGASHYLLARCDL---LQESGLDFIVSSDWPFDLVRDIANDLVR 96

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                  L        P  +  + +   +                    +    +G  + 
Sbjct: 97  GYARSTELERCMQVFQP-NFALLPDSAEVPDGAS-----------RQYCSVTFNVGRSRL 144

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             +    E  +L+ E + +       V   FL     R      LT+RE  CL    +G 
Sbjct: 145 ALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGTRVDRDFELTDRELECLFWIAEGK 203

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS+EIA  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 204 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|229552512|ref|ZP_04441237.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314064|gb|EEN80037.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 233

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   LQL   G +++EIA +L +++ TV  ++ +   KLD  +R QA   A
Sbjct: 154 PQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYA 213

Query: 229 IRFGYI 234
           ++ G +
Sbjct: 214 LKHGLV 219


>gi|56421574|ref|YP_148892.1| hypothetical protein GK3039 [Geobacillus kaustophilus HTA426]
 gi|56381416|dbj|BAD77324.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 391

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 32/247 (12%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
              ++ + +E +  +           F  ++  +   F  ++     LH + +D+G I  
Sbjct: 157 WILRAQTFEESAAHI-----CFGFSYFLPFSRCALFQFVNQESTAIGLHGHGVDNGQIQR 211

Query: 67  ILIETYGDDFLF----------HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
           + +E      L           H      PI         V  +S Q            +
Sbjct: 212 LRVELDSIPMLKESVGKLKAEVHEFRHFRPIY--------VPRASEQFPRLYVDLFGLAS 263

Query: 117 GIAFPVRLGFH---------KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
            +  PV +              G   F +    L   ++     A   ++       K+ 
Sbjct: 264 LVIVPVYVPTEGRMIGGVVLDRGPGRFFAVDRRLFPALMKFGQSAGELLLKWIKAPKKEW 323

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              A +L+ RE   L+L  DG ++ E A +L LS  TV  Y+ SA  KL+A NR +A+AK
Sbjct: 324 EGRAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAK 383

Query: 228 AIRFGYI 234
           A+R G I
Sbjct: 384 ALRLGLI 390


>gi|229164358|ref|ZP_04292288.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           R309803]
 gi|228619101|gb|EEK75997.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           R309803]
          Length = 215

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|229199533|ref|ZP_04326194.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1293]
 gi|228583938|gb|EEK42095.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1293]
          Length = 215

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|218232786|ref|YP_002370188.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160743|gb|ACK60735.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 215

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|206970021|ref|ZP_03230974.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229193664|ref|ZP_04320607.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           10876]
 gi|206734598|gb|EDZ51767.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228589817|gb|EEK47693.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           10876]
          Length = 215

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|261821119|ref|YP_003259225.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|84620008|gb|ABC59302.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum]
 gi|261605132|gb|ACX87618.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 19/200 (9%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108
           +  + NY  +  +        + D  +    + + P  W   ++  VI S  + S    L
Sbjct: 44  VVIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNL 100

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML-ANEVIIE-----AHGACYQVITDFLE 162
                   G  F +    +    +    E   L   E I+E            +      
Sbjct: 101 SKEYDIVNGYTFVLHDNNNNLAALSIMFEENALTDMENIVEKNKDKLQMLLIVIHEKITT 160

Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           L          K+ S     ++RE   L  A  G T  EIA  L + + TV  ++G+   
Sbjct: 161 LYKEITQTPQSKKQSDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVK 220

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL  +N   AI   +    I
Sbjct: 221 KLGVLNAKHAIRLGVELQLI 240


>gi|254462674|ref|ZP_05076090.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2083]
 gi|206679263|gb|EDZ43750.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 165

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 8/165 (4%)

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +        P+ W+ +   +                +   G + P+R    +      +
Sbjct: 1   MILGCYQRFHPVDWKRLDWSSKAARG--FRAEALEYGVGNQGFSIPMRGPNGQYALFTAS 58

Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGY 189
                   +        +     +      LE    R   A + L+ RET  +     G+
Sbjct: 59  HHCSDEDWQTFKNKHRRQLILLAHFFNQKALEFEPDRVPEALKTLSPRETDAMTFLAMGF 118

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              + A+ + +S HT+  Y+ SA  KL A+N   A+A+A+  G I
Sbjct: 119 NRAKAADTMEISEHTLRVYIESARFKLGAINTTHAVARAMSHGLI 163


>gi|319781696|ref|YP_004141172.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167584|gb|ADV11122.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 236

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 8/229 (3%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP-- 65
           G + +S  +L+     +   I A ++ L  I    D    +       N+  D+ ++   
Sbjct: 14  GSRLTSRGDLTSFFMQLTAEIGADSYMLVAIVHDQDRNDAR---IVSSNWIFDAIELIGK 70

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
            ++                 P++     E   + +  +   RL   L      +  + +G
Sbjct: 71  RLIAGLAQGALTVAPGIRPQPLVASRAPEADGLVTGEE--ARLLDVLGHAEIYSLRLNVG 128

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             +   +   +    +    ++ A   C   ++   +L    ++    L++RE  CL   
Sbjct: 129 RQRLFALFSAATAGSIDQPALMRAQLKCCYALSHIPQLI-AAAAMQDPLSDRERECLFWV 187

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T++E+A  LG+S +TVN+Y+  A  K  A NR  AIA AIR G I
Sbjct: 188 SEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGII 236


>gi|302035966|ref|YP_003796288.1| putative LuxR family transcriptional regulator [Candidatus
           Nitrospira defluvii]
 gi|300604030|emb|CBK40362.1| putative Transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
          Length = 265

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 13/232 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + E     +  +    +   +  +Q+ +       ++    +D  R          Y  +
Sbjct: 14  LGEIMYDARSVNRSDGVWKLVSAVQHVVPYE----FSGCGGVDLLRGVDPALGHSTYPRE 69

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
              +         D  ++   +    +   S  E    E     S++L         ++ 
Sbjct: 70  FCQLYMGQGLAA-DPAVYRLITSGQSVT-SSADEPAFSEPKDITSLKL--DFGIKTCLSA 125

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLT 175
            VR       Y  F++      +++ +            ++        ++ +     L+
Sbjct: 126 GVRGEHGTCSYFAFSNFDAKQTDKLRLLLDILTPHFHLSYMRCHSAWNPERPAPPPTLLS 185

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +RE   L+    G T+ EI+  L +S++TV  +L +   K+   NR  AIA 
Sbjct: 186 KREEEILRWVAAGKTNWEISVILKVSLNTVKFHLKNVFQKIGVENRWSAIAY 237


>gi|254438346|ref|ZP_05051840.1| HTH DNA binding domain family [Octadecabacter antarcticus 307]
 gi|198253792|gb|EDY78106.1| HTH DNA binding domain family [Octadecabacter antarcticus 307]
          Length = 202

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 56/202 (27%), Gaps = 20/202 (9%)

Query: 35  LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE 94
              +     FP  +     ++       D          D  +    +    I W +I  
Sbjct: 19  YIALRVGFAFPLEE-----VNALPAPWVDHYTTHRFMLHDPVIRWIYANTGAITWSAIDL 73

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF--HKNGYVIFTSEFLMLANEVIIEAHGA 152
                      +          G+A     G    +  +  F           I   H  
Sbjct: 74  -----PDPMRVLHQAQTFGLRYGVAVACFDGNREGQRSFGTFARSDREFEQAEIDALHAY 128

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             +             +   NLT  E   L++  +G   ++IA  LG+S   V   L +A
Sbjct: 129 VLK--------RHHAKAPPTNLTNAELEALRMVREGLRLKQIAHLLGISEGAVKQRLKNA 180

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL A    QA A    FG I
Sbjct: 181 KNKLGAQTSAQAAAMVGEFGLI 202


>gi|51891787|ref|YP_074478.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855476|dbj|BAD39634.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 214

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 44/83 (53%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++    +    R   A  LTERET  L+L   G  ++EIA  L +S +TV  ++ +
Sbjct: 130 IAAKLVQVISQGGPARQEGAEGLTERETEILRLIASGAANKEIAAALFISENTVKTHISN 189

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A +R +A+ KA+  G++
Sbjct: 190 LFQKLGARDRTEAVTKALARGWL 212


>gi|302560338|ref|ZP_07312680.1| nitrate/nitrite response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477956|gb|EFL41049.1| nitrate/nitrite response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 267

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 178 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 237

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 238 HVRNILEKLQLHSRMEAVVYAMREKIL 264


>gi|307726319|ref|YP_003909532.1| regulatory protein LuxR [Burkholderia sp. CCGE1003]
 gi|307586844|gb|ADN60241.1| regulatory protein LuxR [Burkholderia sp. CCGE1003]
          Length = 332

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 16/227 (7%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             R+  ++ RI+   F  ++  +      R+ +                       D  +
Sbjct: 101 QDRMEFVRQRIRQLGFNSFSYTATRTSAHRKTMFVLTSYESQSWLTRYFRERYFELDPRV 160

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131
              +   +P +W ++     +  +   S      + +       +GI   + L       
Sbjct: 161 ALASPTGMPFLWNTVDMRADLPRAQMRSERLGGLIDMLEETGRKSGILTQMPLPEPDLSA 220

Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181
            +  +  +         +  E ++ AH     + T    +     +    +T  E     
Sbjct: 221 SLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGMTPAQQHRVTLSELQHAV 280

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L+    G   +EIA  LGLS H V+ +L       +  NR+Q I  A
Sbjct: 281 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 327


>gi|300715701|ref|YP_003740504.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061537|emb|CAX58651.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661]
          Length = 247

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 21/216 (9%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           +A   ++              + N   +   +       + D  L      + P  W   
Sbjct: 31  YAYAIMSKRNPADFS-----IISN-RQEWFKVYIENNFQFIDPVLITALYRMTPFSWDEN 84

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEA-- 149
                          +        G  F +    +    +    +       E +I+   
Sbjct: 85  LMLNK-GVKVPKLFDMARNHDIINGYTFVLHDHNNNLVVLSIMLDKHCDDNIEELIQLNK 143

Query: 150 ---HGACYQVITDFLELFKKRSSAA--------RNLTERETSCLQLAGDGYTSEEIAEKL 198
                          +L++++S  A           T RE   +  A  G + +EIA  L
Sbjct: 144 DKLQMLLITTHEKLTQLYQEQSRKADFEEMNTRELFTSRENEIIYWASVGKSYQEIALIL 203

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+ + TV  ++G+A  KL   N   AI   I    I
Sbjct: 204 GIKLTTVKYHIGNAVKKLGVTNAKHAIRLGIELNLI 239


>gi|291453746|ref|ZP_06593136.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356695|gb|EFE83597.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 267

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 178 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 237

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 238 HVRNILEKLQLHSRMEAVVYAMREKIL 264


>gi|2367439|gb|AAB69646.1| LuxR homolog [Pectobacterium betavasculorum]
          Length = 242

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 13/196 (6%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           +  + +Y  +  D+       + D  +    + + P  W+                 L  
Sbjct: 44  MIIISSYPDEWVDLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFDLSK 102

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE----AHGACYQVITDFLELF 164
                 G  F +         +     S +     + I E          +   + + L 
Sbjct: 103 KYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVEKFIEEKKDTFQMLLIEAYEEIISLC 162

Query: 165 KKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           ++   + + L      ++RE   L  A  G T  E+A  LG+   TV  ++G+   KL  
Sbjct: 163 REMIESKKQLHNKDIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 219 VNRIQAIAKAIRFGYI 234
           +N   AI   +    I
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|212640416|ref|YP_002316936.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561896|gb|ACJ34951.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 260

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG +++ IA+ L +S  TV  ++ +   KL+  +R QA+  AI
Sbjct: 193 PYHLLTRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVNDRTQAVVVAI 252

Query: 230 RFGYI 234
           + G++
Sbjct: 253 KNGWV 257


>gi|114799307|ref|YP_759854.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739481|gb|ABI77606.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC
           15444]
          Length = 254

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 77/248 (31%), Gaps = 26/248 (10%)

Query: 11  SSSLQELSPRLHLIQNRIKA----RNFALYTINSALDFP------RRQQLICELHNYDLD 60
           S+  Q+    +  +  RI A           +++ L  P        + L   +  +   
Sbjct: 3   SAGPQDTFSEVMDLARRIDAVGRETGLPYVAVSADLSDPSPMIGADGRPLAETVFRWVDP 62

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPI--------IWQSIQEETVIESSGQLSVRLEGGL 112
                           +        P          W+ ++    +           G  
Sbjct: 63  GLAYWKDRAFALRAGIIRVVRVCGEPFCYHGGKMHSWRQVRALEAVNRKIDP--EAYGSY 120

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT--DFLELFKKRSSA 170
                I  P+       G V++ ++   +    I EA GA   ++              +
Sbjct: 121 GVQGAIVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGAELYMLALKFLSAYKDAVLPS 180

Query: 171 ARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           A       T RE  CL+ A  G T  EIA  +G+S  T+  ++ +A+ KL    R Q I 
Sbjct: 181 ADPEMVEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIR 240

Query: 227 KAIRFGYI 234
            A   GYI
Sbjct: 241 LATTLGYI 248


>gi|237846560|gb|ACR22888.1| SpsR [Serratia plymuthica]
          Length = 248

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 15/189 (7%)

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
           +           + D  L   +  + P  W                  +        G  
Sbjct: 52  EWFKFYTENNYQFIDPVLITASRRITPFSWDENLM-IDPGLKLPRIFDMARNYNIVNGYT 110

Query: 120 FPVRLGFHKNGYVIFTSEF--LMLANEVIIE----AHGACYQVITDFLELFKKRSSA--- 170
           F +    H    +    +          I                   EL+K+ +S    
Sbjct: 111 FVLHDHNHNLVVLSIMIDKHCDDNIEGEIAANQDKLQMLLITTHDKTTELYKEINSPNYF 170

Query: 171 -----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                    ++RE   +  A  G + +EIA  LG+ + T+  ++G+A  KL   N   AI
Sbjct: 171 DKMNNKEIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAI 230

Query: 226 AKAIRFGYI 234
              +    I
Sbjct: 231 RLGVELQLI 239


>gi|199597190|ref|ZP_03210622.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258508705|ref|YP_003171456.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|199591994|gb|EDZ00069.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257148632|emb|CAR87605.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259650011|dbj|BAI42173.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 221

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   LQL   G +++EIA +L +++ TV  ++ +   KLD  +R QA   A++ 
Sbjct: 145 DELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKH 204

Query: 232 GYI 234
           G +
Sbjct: 205 GLV 207


>gi|317054417|ref|YP_004118442.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
 gi|316952412|gb|ADU71886.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
          Length = 241

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 16/197 (8%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           I  + +      ++         D  + +  + + PIIW          +  ++   ++ 
Sbjct: 42  IVVISSISKYFDEVYLAKKHQRIDPVIINALNRVSPIIWDENLMINSQWTINKIFNAVKP 101

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIF-------------TSEFLMLANEVIIEAHGACYQVI 157
                +G  F +    +    +                ++       ++I+ H     + 
Sbjct: 102 FYNIVSGQTFVLHDYNNNLVLLSLYINKYLMVDVNEKATKDRHDLQGLLIDTHEMMLHLY 161

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            D     ++  S    L+ RE   L  +  G T  EIA  L ++V TV  ++G    K+ 
Sbjct: 162 RDE---SERHKSEENMLSSRENEILYWSSTGKTYPEIAHMLNITVSTVKFHMGKIVKKMG 218

Query: 218 AVNRIQAIAKAIRFGYI 234
             N   AI+ AI    I
Sbjct: 219 VNNAKHAISLAIELNII 235


>gi|240145753|ref|ZP_04744354.1| nitrate/nitrite response regulator protein NarL [Roseburia
           intestinalis L1-82]
 gi|257202169|gb|EEV00454.1| nitrate/nitrite response regulator protein NarL [Roseburia
           intestinalis L1-82]
 gi|291536999|emb|CBL10111.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis M50/1]
          Length = 213

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               SS   +LT RE   L++   G  ++EIAE L +S  TV  ++ +   K+   +R Q
Sbjct: 141 RDSDSSKIESLTRRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRTQ 200

Query: 224 AIAKAIRFGYI 234
           A   AIR   I
Sbjct: 201 AAVFAIRNNLI 211


>gi|297200099|ref|ZP_06917496.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297147573|gb|EDY61231.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 269

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 180 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 239

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 240 HVRNILEKLQLHSRMEAVVYAMREKIL 266


>gi|121998744|ref|YP_001003531.1| two component LuxR family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121590149|gb|ABM62729.1| two component transcriptional regulator, LuxR family
           [Halorhodospira halophila SL1]
          Length = 217

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 18/222 (8%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +Q  + A+        +      +  ++  + ++  D   +   +    G
Sbjct: 6   VDDHQLFRAALQELLNAQGL------TTESGSGQDDVLGLVDSFGPDLVLLDLRMPGQDG 59

Query: 74  DDFLF--HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
              L   H     LP++       T  E    L   L  G     G         +    
Sbjct: 60  LAVLRQIHERHPGLPVV-----MLTGSEEERDLFDCLRAGA---QGYLLKHNDPEYLISA 111

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           +   ++  +     + +       +                 LT RE   L+    G ++
Sbjct: 112 LHQATDGKIAVAPQLTDT--LARALGQPPDRTEPGPPDPFAGLTPRERDILERLAAGESN 169

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + IA  LG+S  TV  ++ S   KL   +R++A  KA+ FG 
Sbjct: 170 KVIARHLGISDGTVKLHVKSVLRKLGVHSRVEAAIKAVDFGL 211


>gi|144899494|emb|CAM76358.1| regulatory protein, LuxR [Magnetospirillum gryphiswaldense MSR-1]
          Length = 253

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 4/187 (2%)

Query: 52  CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111
             L +      +          D +         PIIW  +      +   + S  ++  
Sbjct: 65  LMLESLRSGYVEAKIATGMADADFYYQAAKCNPAPIIWGDLSLSDDADEQERRSFEVDCD 124

Query: 112 LLPFAGIAFPVR--LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKR 167
                G   P     GF  + + + T +      + +   +G   + I    ++   +  
Sbjct: 125 FGILTGATLPASFADGFGASAFSVHTPDLSFAGFDRMWRENGEAIRQIACAFDICMREDH 184

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 L+ RE   L    +G   ++IA  L L   TV  ++ SA  KL A    QA+A 
Sbjct: 185 MPDFFPLSPREQEILLRLTEGLRPQQIAFLLSLHEGTVEKHIESARRKLKAATVTQAVAT 244

Query: 228 AIRFGYI 234
           A+ FG I
Sbjct: 245 ALIFGLI 251


>gi|167616524|ref|ZP_02385155.1| autoinducer-binding transcriptional regulator, LuxR family,
           putative [Burkholderia thailandensis Bt4]
          Length = 213

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 56/213 (26%), Gaps = 17/213 (7%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGD---IPNILIETYGDDFLFHFNSGLLPI 87
             F           P  ++      NY         +         D             
Sbjct: 7   LGFQFCAYRLTAPIPITRRRTFVWSNYPNACAASPVLDADRSGRGADTDAQACGVT---- 62

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI- 146
                    V ES                G A  VR  +   G + F      +  E + 
Sbjct: 63  ----ADATQVFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELD 118

Query: 147 ---IEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLS 201
               E     +        L +  +       ++  E   L    +G T  EI+  L +S
Sbjct: 119 DIEPEMIWLAHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMS 178

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  +N ++ +   KL A N+  A  KA   G I
Sbjct: 179 VRNINFHIQNVVGKLGATNKTHAAVKATLVGLI 211


>gi|138894116|ref|YP_001124569.1| DNA-binding response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250655|ref|ZP_03149344.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134265629|gb|ABO65824.1| DNA-binding response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209874|gb|EDY04644.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 210

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178
                Y++ TS+   +A+ +    HG          +V+ +      +       LT RE
Sbjct: 96  AGATSYLLKTSKASEIADAIRATFHGQSVLEPEVAGKVMQNRRRQRARL--PHEQLTSRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L   G T++E+A++L +S+ TV  ++ +   KL   +R QA+  A R G +
Sbjct: 154 MEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209


>gi|307331341|ref|ZP_07610462.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883019|gb|EFN14084.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 249

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 160 MAAKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 219

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 220 HVRNILEKLQLHSRMEAVVYAMREKIL 246


>gi|29831611|ref|NP_826245.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608727|dbj|BAC72780.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 248

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 159 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 218

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 219 HVRNILEKLQLHSRMEAVVYAMREKIL 245


>gi|209547914|ref|YP_002279831.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533670|gb|ACI53605.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 248

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 73/220 (33%), Gaps = 18/220 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILIETYGD 74
           L   L  +   + A ++ L   +                ++  D       +++      
Sbjct: 45  LQSGLRALTEYVGASHYLLARCDL---LQESGLDFIVSSDWPFDLVRDIANDLVRGYARS 101

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             L        P          V + + +               +    +G  +   +  
Sbjct: 102 TELEKCMQVFQPNFALMPDSADVPDGASRQYC------------SVTFNVGRSRLALMFL 149

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             E  +L+ E + +       V   FL     R      LT+RE  CL    +G TS+EI
Sbjct: 150 FGEGFILSPERLRDVGLLAGYV-ASFLRCGGTRVDRDFELTDRELECLFWIAEGKTSDEI 208

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 209 AMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|324329359|gb|ADY24619.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 215

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA   A++ G +
Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|167578384|ref|ZP_02371258.1| autoinducer-binding transcriptional regulator, LuxR family,
           putative [Burkholderia thailandensis TXDOH]
 gi|257143030|ref|ZP_05591292.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 215

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 56/213 (26%), Gaps = 17/213 (7%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGD---IPNILIETYGDDFLFHFNSGLLPI 87
             F           P  ++      NY         +         D             
Sbjct: 9   LGFQFCAYRLTAPIPITRRRTFVWSNYPNACAASPVLDADRSGRGADTDAQACGVT---- 64

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI- 146
                    V ES                G A  VR  +   G + F      +  E + 
Sbjct: 65  ----ADATQVFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELD 120

Query: 147 ---IEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLS 201
               E     +        L +  +       ++  E   L    +G T  EI+  L +S
Sbjct: 121 DIEPEMIWLAHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMS 180

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  +N ++ +   KL A N+  A  KA   G I
Sbjct: 181 VRNINFHIQNVVGKLGATNKTHAAVKATLVGLI 213


>gi|320010465|gb|ADW05315.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 250

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LTERE   L+L   G  + +IA++L +S +TV  
Sbjct: 161 MASKLLTEFKSMIQRTDERRLVPAPRLTERELEVLKLVATGMNNRDIAKELFISENTVKN 220

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 221 HVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|30265432|ref|NP_847809.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530989|ref|YP_022338.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188248|ref|YP_031501.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481286|ref|YP_039401.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145220|ref|YP_086677.1| response regulator [Bacillus cereus E33L]
 gi|65317392|ref|ZP_00390351.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|118480442|ref|YP_897593.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871317|ref|ZP_02215966.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635732|ref|ZP_02394042.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640431|ref|ZP_02398695.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688212|ref|ZP_02879423.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708051|ref|ZP_02898499.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651955|ref|ZP_02934538.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568889|ref|ZP_03021791.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036150|ref|ZP_03103550.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041030|ref|ZP_03108327.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045422|ref|ZP_03112653.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906592|ref|YP_002454426.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225867394|ref|YP_002752772.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227818179|ref|YP_002818188.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228918025|ref|ZP_04081555.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228930420|ref|ZP_04093421.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936698|ref|ZP_04099489.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228949137|ref|ZP_04111407.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124916|ref|ZP_04254092.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           95/8201]
 gi|229187641|ref|ZP_04314778.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC
           6E1]
 gi|229603380|ref|YP_002869624.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687146|ref|ZP_05151004.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724071|ref|ZP_05185856.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735533|ref|ZP_05193240.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742202|ref|ZP_05199889.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755887|ref|ZP_05207919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761599|ref|ZP_05213619.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056878|ref|YP_003795089.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30260110|gb|AAP29295.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47506137|gb|AAT34813.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182175|gb|AAT57551.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49332842|gb|AAT63488.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978689|gb|AAU20239.1| response regulator [Bacillus cereus E33L]
 gi|118419667|gb|ABK88086.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164712984|gb|EDR18512.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511651|gb|EDR87033.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528841|gb|EDR91598.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127024|gb|EDS95903.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667905|gb|EDT18657.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082659|gb|EDT67723.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190559956|gb|EDV13939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991317|gb|EDX55285.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196023629|gb|EDX62305.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028198|gb|EDX66808.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218537324|gb|ACK89722.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225787376|gb|ACO27593.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227004175|gb|ACP13918.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228595795|gb|EEK53478.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC
           6E1]
 gi|228658546|gb|EEL14210.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           95/8201]
 gi|228810578|gb|EEM56929.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228822907|gb|EEM68748.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829267|gb|EEM74903.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228841613|gb|EEM86727.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229267788|gb|ACQ49425.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300379047|gb|ADK07951.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 215

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA   A++ G +
Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|302551827|ref|ZP_07304169.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469445|gb|EFL32538.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 270

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 181 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 240

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 241 HVRNILEKLQLHSRMEAVVYAMREKIL 267


>gi|152974963|ref|YP_001374480.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152023715|gb|ABS21485.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 210

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 140 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199

Query: 225 IAKAIRFGYI 234
           +  A R   I
Sbjct: 200 VIYAFRHQLI 209


>gi|182438321|ref|YP_001826040.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778972|ref|ZP_08238237.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466837|dbj|BAG21357.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659305|gb|EGE44151.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 251

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LTERE   L+L   G  + +IA++L +S +TV  
Sbjct: 162 MASKLLTEFKSMIQRTDERRLVPAPRLTERELEVLKLVATGMNNRDIAKELFISENTVKN 221

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 222 HVRNILEKLQLHSRMEAVVYAMREKIL 248


>gi|295699018|ref|YP_003606911.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438231|gb|ADG17400.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 333

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 16/227 (7%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             R+  ++ RI+   F  ++  +       + +                       D  +
Sbjct: 102 QDRMEFVRQRIRQLGFDSFSYTATRTSSHHKTMFVLTSYESQAWLTRYFRERYFELDPRV 161

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131
            H +   +P +W +      +  +   S      + +       +GI   + L   +   
Sbjct: 162 AHASPTGMPFLWNTADLRADLPRAQLRSERLGALIDMLEAAGRKSGILTQMPLPEPELSA 221

Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSC 181
            +  +  +         +  E ++ AH     + T    +     +  +   L++ + + 
Sbjct: 222 SLCFNSEIGNPRWMTESIVAETLMFAHSIHEFIWTHAKSVIGIAPAQQQRIALSKLQHAV 281

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L+    G   +EIA  LGLS H V+ +L       +  NR+Q I  A
Sbjct: 282 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328


>gi|91777853|ref|YP_553061.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690513|gb|ABE33711.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 333

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 16/227 (7%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             R+  ++ RI+   F  ++ ++       + +                       D  +
Sbjct: 102 QDRIEFVRQRIRQLGFDSFSYSATRTSAHHKTMFVLTSYESRSWLTRYFRERYFELDPRV 161

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131
              +   LP +W +      +  +   S      + +       +GI   + L   +   
Sbjct: 162 ALASPTGLPFLWNTADMRADLPRAQMRSERLGGLIDMLEATGRKSGILTQMPLPEPELSA 221

Query: 132 VIFTSEF--------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181
            +  +            +  E ++ AH     + T    +     +  + +T  E     
Sbjct: 222 SLCFNSETGNPRWMTESIVAETLMFAHMIHEFIWTHAKSVIGIAPAQQQRVTLSELQHAV 281

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L+    G   +EIA  LGLS H V+ +L       +  NR+Q I  A
Sbjct: 282 LRAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328


>gi|294629677|ref|ZP_06708237.1| nitrate/nitrite response regulator [Streptomyces sp. e14]
 gi|292833010|gb|EFF91359.1| nitrate/nitrite response regulator [Streptomyces sp. e14]
          Length = 267

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 178 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 237

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 238 HVRNILEKLQLHSRMEAVVYAMREKIL 264


>gi|221633642|ref|YP_002522868.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
 gi|221156159|gb|ACM05286.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
          Length = 245

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 39/78 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             +   L +  S     LT RE   L     GY+++EIA+ L +S  TV  ++ S   KL
Sbjct: 145 FRELSRLDRTSSGFFSPLTPREIEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKL 204

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+  A+R G+I
Sbjct: 205 AVNDRTQAVIYALRHGWI 222


>gi|229176087|ref|ZP_04303581.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3]
 gi|228607431|gb|EEK64759.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3]
          Length = 215

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANTLLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|75760127|ref|ZP_00740188.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900537|ref|YP_002448948.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903890|ref|ZP_04068005.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 4222]
 gi|228968544|ref|ZP_04129531.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74492399|gb|EAO55554.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542579|gb|ACK94973.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791148|gb|EEM38763.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228855799|gb|EEN00344.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 4222]
          Length = 215

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANTLLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|302521432|ref|ZP_07273774.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302430327|gb|EFL02143.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 264

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (54%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           +      ++R   A  LT+RE   L+L   G  +++IA++L +S +TV  ++ +   KL 
Sbjct: 185 SMIQRTDERRLVPAPRLTDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQ 244

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R++A+  A+R   +
Sbjct: 245 LHSRMEAVVYAMREKIL 261


>gi|318056754|ref|ZP_07975477.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078616|ref|ZP_07985948.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333024919|ref|ZP_08452983.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744771|gb|EGJ75212.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (54%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           +      ++R   A  LT+RE   L+L   G  +++IA++L +S +TV  ++ +   KL 
Sbjct: 171 SMIQRTDERRLVPAPRLTDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQ 230

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R++A+  A+R   +
Sbjct: 231 LHSRMEAVVYAMREKIL 247


>gi|89095961|ref|ZP_01168855.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89089707|gb|EAR68814.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 160 PLHLLTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 219

Query: 230 RFGYI 234
           + G++
Sbjct: 220 KNGWV 224


>gi|148658361|ref|YP_001278566.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570471|gb|ABQ92616.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 226

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176
           L     GY++  +    +   V     G          Q +                LT 
Sbjct: 106 LRAGVAGYLLKDASRREIIGAVRQVLRGDAFLNPDLVMQTLRRLASATPDDEPPVEPLTA 165

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+L   G T+ EIA +L +S  TV  ++     KL   +R QA  +A+  G +
Sbjct: 166 REQQVLKLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGLV 223


>gi|297159907|gb|ADI09619.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 252

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 163 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 222

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 223 HVRNILEKLQLHSRMEAVVYAMREKIL 249


>gi|332096683|gb|EGJ01674.1| regulatory protein sdiA [Shigella boydii 3594-74]
          Length = 147

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 5/147 (3%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF----TSEFLMLANEVIIE 148
                + S  Q             G+   + L     G++ F    T E  +L++E+ ++
Sbjct: 1   MWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 60

Query: 149 AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                 + +   + L  +   +   N ++RE   L+   +G TS EIA  L +S +TVN 
Sbjct: 61  MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 120

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   K++A N+ Q    A   G I
Sbjct: 121 HQKNMQKKINAPNKTQVACYAAATGLI 147


>gi|302544912|ref|ZP_07297254.1| nitrate/nitrite response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462530|gb|EFL25623.1| nitrate/nitrite response regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 249

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 160 MAAKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 219

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 220 HVRNILEKLQLHSRMEAVVYAMREKIL 246


>gi|170692623|ref|ZP_02883785.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170142279|gb|EDT10445.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 332

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 73/227 (32%), Gaps = 16/227 (7%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             R+  ++ RI+   F  ++  +      R+ +                       D  +
Sbjct: 101 QDRIEFVRQRIRQLGFNSFSYTATRTSAHRKTMFVLTSYESQSWLTRYFRERYFELDPRV 160

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131
              +   +P +W ++     +  +   S      + +       +GI   + L   +   
Sbjct: 161 ALASPTGMPFLWNTVDMRADLPRAQMRSERLGGLIDMLEATGRKSGILTQMPLPEPELSA 220

Query: 132 VIFTSEFLM--------LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181
            +  +  +         +  E ++ AH     + T    +     +    +T  E     
Sbjct: 221 SLCFNSEIANPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGMTPAQQHRVTLSELQHAV 280

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L+    G   +EIA  LGLS H V+ +L       +  NR+Q I  A
Sbjct: 281 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 327


>gi|294499258|ref|YP_003562958.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349195|gb|ADE69524.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 212

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 40/79 (50%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            ++T   +  +K+ +   +LT+RE   L+    G +++EI   L ++  TV  ++ +   
Sbjct: 133 HLLTRLTKSSEKKVNFIDHLTKREKDVLKEIAKGKSNKEIGVALHITEKTVKTHVSNILS 192

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   +R QA   A++ G 
Sbjct: 193 KLGVQDRTQAALYAVQHGI 211


>gi|83716249|ref|YP_439875.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650074|gb|ABC34138.1| autoinducer-binding transcriptional regulator, LuxR family,
           putative [Burkholderia thailandensis E264]
          Length = 238

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 62/235 (26%), Gaps = 20/235 (8%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD---IP 65
           + S S  +    +      +    F           P  ++      NY         + 
Sbjct: 13  RASRSAGDAFDVVLQRGTEL---GFQFCAYRLTAPIPITRRRTFVWSNYPNACAASPVLD 69

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   D                      V ES                G A  VR  
Sbjct: 70  ADRSGRGADTDAQACGVT--------ADATQVFESMADGLWAETSDQGVRYGWALSVRDR 121

Query: 126 FHKNGYVIFTSEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAAR--NLTERET 179
           +   G + F      +  E +     E     +        L +  +       ++  E 
Sbjct: 122 WGAVGTLKFARGTREIVQEELDDIEPEMIWLAHLAHDTIGSLMRDETIPGEIARVSLVER 181

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L    +G T  EI+  L +SV  +N ++ +   KL A N+  A  KA   G I
Sbjct: 182 QILLWTAEGKTVSEISSILQMSVRNINFHIQNVVGKLGATNKTHAAVKATLVGLI 236


>gi|282865219|ref|ZP_06274272.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560142|gb|EFB65691.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 250

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LTERE   L+L   G  + +IA++L +S +TV  
Sbjct: 161 MASKLLTEFKSMIQRTDERRLVPAPRLTERELEVLKLVATGMNNRDIAKELFISENTVKN 220

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 221 HVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|89100435|ref|ZP_01173298.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89084864|gb|EAR64002.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 214

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +       LTERE   L   G+G T++EI+ +L + + TV  ++ +   KL   +R
Sbjct: 136 RLRGREKKPHEELTERELEVLLCIGEGMTNQEISNQLFIGIKTVKTHVSNILSKLSVSDR 195

Query: 222 IQAIAKAIRFGYI 234
            QA   A + G I
Sbjct: 196 TQAAVYAHQNGLI 208


>gi|259419174|ref|ZP_05743091.1| transcriptional regulator AhyR/asaR family [Silicibacter sp.
           TrichCH4B]
 gi|259345396|gb|EEW57250.1| transcriptional regulator AhyR/asaR family [Silicibacter sp.
           TrichCH4B]
          Length = 229

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 71/232 (30%), Gaps = 12/232 (5%)

Query: 11  SSSLQELSPRLHL-IQNRIKARNFALYTINSAL-DFPRRQQLICELHNYDLDSGDIPNIL 68
             ++ +L   ++  +  +++   +    +  +          I E         D     
Sbjct: 1   MGTVADLVDAVYADLGPQVQGLVYDYSPVPFSHEPGRFVLPEIIEARGAAEVLVDDWCGR 60

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG------QLSVRLEGGLLPFAGIAFPV 122
                D         L P +W    EE  +          +             G+  P+
Sbjct: 61  SLYRADPVQRRAAKILNPFVWSYHAEECSVIREDLGQGDVREVRERLLDWTLGRGMTVPL 120

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
            L       +    E        +        Q       +  +   A   LT RE  CL
Sbjct: 121 HLPGRGFATLSAFVEGRA----DMDMLARFALQAFELQDRISVELRQARGPLTLREAECL 176

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                G ++++IA +L  S   V  +L +A  KL A NR  A+A A R G+I
Sbjct: 177 SHTAAGLSAKQIAHELNRSESMVVKHLQAAASKLGARNRSHAVAIATRQGWI 228


>gi|323529462|ref|YP_004231614.1| Autoinducer-binding domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323386464|gb|ADX58554.1| Autoinducer-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 332

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 16/227 (7%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             R+  ++ RI+   F  ++  +      R+ +                       D  +
Sbjct: 101 QDRIEFVRQRIRQLGFNSFSYTATRTSAHRKTMFVLTSYESQSWLTRYFRERYFELDPRV 160

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131
              +   LP +W ++     +  +   S      + +       +GI   + L   +   
Sbjct: 161 ALASPTGLPFLWNTVDMRADLPRAQMRSERLGSLIDMLEATGRKSGILTQMPLPEPELSA 220

Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181
            +  +  +         +  E ++ AH     + T    +     +    +T  E     
Sbjct: 221 SLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGMTPAQQHRVTLSELQHAV 280

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L+    G   +EIA  LGLS H V+ +L       +  NR+Q I  A
Sbjct: 281 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 327


>gi|300117929|ref|ZP_07055696.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298724793|gb|EFI65468.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 215

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA   A++ G +
Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|290959922|ref|YP_003491104.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649448|emb|CBG72563.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 249

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 160 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 219

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 220 HVRNILEKLQLHSRMEAVVYAMREKIL 246


>gi|206975855|ref|ZP_03236766.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962901|ref|YP_002341479.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098883|ref|YP_002532941.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229142155|ref|ZP_04270680.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST26]
 gi|206745949|gb|EDZ57345.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217063637|gb|ACJ77887.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242942|gb|ACM15652.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228641444|gb|EEK97750.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST26]
          Length = 215

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGVV 215


>gi|42784585|ref|NP_981832.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42740517|gb|AAS44440.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 215

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGVV 215


>gi|308175040|ref|YP_003921745.1| transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607904|emb|CBI44275.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555009|gb|AEB25501.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           TA208]
 gi|328913364|gb|AEB64960.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           LL3]
          Length = 210

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V++       +       LT+RE   L L  +G T++EI E+L +++ TV  ++ +
Sbjct: 129 VAGKVLSRLRHSENQL--PHETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITN 186

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLD  +R QA   A R   +
Sbjct: 187 ILSKLDVSDRTQAAVYAHRNHLV 209


>gi|188586933|ref|YP_001918478.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351620|gb|ACB85890.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 228

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 152 ACYQVITDFLELFKKRS-------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
             ++++ +F  L +          +    LT RE   L+L   GYT++EI+++L +S  T
Sbjct: 137 ITHKLLGEFNRLAQNSPRNIKSDEAVQSELTGREKEILELMAQGYTNKEISKELYISEKT 196

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++ +   K+D  +R QA+  A++ G +
Sbjct: 197 VKNHVSNILRKMDVTDRTQAVITALKCGVV 226


>gi|297194044|ref|ZP_06911442.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152083|gb|EFH31522.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 253

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 164 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 223

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 224 HVRNILEKLQLHSRMEAVVYAMREKIL 250


>gi|254387129|ref|ZP_05002401.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345946|gb|EDX26912.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 154 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 213

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 214 HVRNILEKLQLHSRMEAVVYAMREKIL 240


>gi|154687422|ref|YP_001422583.1| YvqC [Bacillus amyloliquefaciens FZB42]
 gi|154353273|gb|ABS75352.1| YvqC [Bacillus amyloliquefaciens FZB42]
          Length = 210

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V++       +       LT+RE   L L  +G T++EI E+L +++ TV  ++ +
Sbjct: 129 VAGKVLSRLRHSENQL--PHETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITN 186

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLD  +R QA   A R   +
Sbjct: 187 ILSKLDVSDRTQAAVYAHRNHLV 209


>gi|254452750|ref|ZP_05066187.1| transcriptional regulator, LuxR family [Octadecabacter antarcticus
           238]
 gi|198267156|gb|EDY91426.1| transcriptional regulator, LuxR family [Octadecabacter antarcticus
           238]
          Length = 170

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 50/180 (27%), Gaps = 15/180 (8%)

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
                 D          D  +    +    I W +I             +          
Sbjct: 4   LPAPWVDHYTTHRFMLHDPVIRWIYANTGAIRWSAIDL-----PDPMRVLDQAQTFGLRY 58

Query: 117 GIAFPVRLGF--HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
           G+A     G    +  +  F           I   H    Q             +   NL
Sbjct: 59  GVAVACFDGNREGQRSFGTFARSDREFEQAEIDALHAYVVQ--------RHHAKAPPTNL 110

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T  E   L++  +G   ++IA  L +S   V   L +A +KL A    QA A    FG I
Sbjct: 111 THAELEALRMIKEGLRLKQIAYSLSISEGAVKQRLKNAKIKLGAQTSAQAAAMVREFGLI 170


>gi|148554913|ref|YP_001262495.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148500103|gb|ABQ68357.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 278

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 12/190 (6%)

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF- 115
           +D D       +                 P             +                
Sbjct: 73  WDPDGAQWWQDVRFGLRAPVAEACRVESRPFWANRDGARDRDGTPILRQFDFAAHYGRLV 132

Query: 116 ---AGIAFPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDF-------LELF 164
              AGI  PV L F + G V F   +         ++ H     ++          LE  
Sbjct: 133 ENPAGIVVPVHLPFSRIGMVSFSCRDNRRDDLSRELDEHFETLYLLGHLFIEGYARLETG 192

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +    A  LT  E +CL+    G T +EIA  +G +  T+  +L +A +KL A NR QA
Sbjct: 193 DRWLPDAVTLTRLEVNCLRWVARGKTDDEIATIMGRARPTIRFHLQNAAIKLGAANRSQA 252

Query: 225 IAKAIRFGYI 234
           + +A + GY+
Sbjct: 253 VFRAGQLGYL 262


>gi|89097699|ref|ZP_01170587.1| YhcZ [Bacillus sp. NRRL B-14911]
 gi|89087558|gb|EAR66671.1| YhcZ [Bacillus sp. NRRL B-14911]
          Length = 211

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H      +   L    K+ S    LT+RE   L+    G +++EIA  L ++  TV  +
Sbjct: 126 LHPKATSHLLSHLSNKDKKKSPIDELTKRELDVLKEIAKGKSNKEIAASLFITEKTVKTH 185

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL+  +R QA   A+R   +
Sbjct: 186 VSNLLSKLEISDRTQAALLAVREKLV 211


>gi|239941686|ref|ZP_04693623.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988145|ref|ZP_04708809.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445128|ref|ZP_06584518.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348075|gb|EFE74979.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 251

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LTERE   L+L   G  + +IA++L +S +TV  
Sbjct: 162 MASKLLTEFKSMIQRTDERRLVPAPRLTERELEVLKLVATGMNNRDIAKELFISENTVKN 221

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 222 HVRNILEKLQLHSRMEAVVYAMREKIL 248


>gi|229158972|ref|ZP_04287029.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           4342]
 gi|228624583|gb|EEK81353.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           4342]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K          LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPFIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA   A++ G +
Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|84498193|ref|ZP_00996990.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381693|gb|EAP97576.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 202

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 151 GACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               Q+I +F  L     K ++A   LTERE   L L   G  ++EIA +L +S +TV  
Sbjct: 112 HMASQLIAEFSRLSNEPPKEATAGPRLTERELEVLGLVARGKANKEIATQLFISENTVKN 171

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A   A+R   I
Sbjct: 172 HVRNILEKLQLHSRVEAALYAMRRNLI 198


>gi|239981891|ref|ZP_04704415.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 243

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 154 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 213

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 214 HVRNILEKLQLHSRMEAVVYAMREKIL 240


>gi|298246329|ref|ZP_06970135.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553810|gb|EFH87675.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 233

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 23/166 (13%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML----ANEVII 147
           +  E  I    +   +L         I F       +  + I       L      + I 
Sbjct: 66  LDLEMPIMDGVEAIKQLRQRRQNARIIVFTAFDTDERIIHAIQAGADGYLLKGSPRDEIF 125

Query: 148 EAHGACYQ--------VITDFLELFKKRS-----------SAARNLTERETSCLQLAGDG 188
           +A     +        V +  L    +R                 LTERE   L+L   G
Sbjct: 126 KAIRLAMEGGSLLQPLVASKLLRHMGQRERENNYRTLQGIPRVEELTERELEVLRLLAQG 185

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++EIA  L +S  T   ++ S   KL A NR +A+A A + G I
Sbjct: 186 MPNKEIASHLVISERTAKFHVSSIMSKLGATNRTEAVALAAQRGLI 231


>gi|21221451|ref|NP_627230.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787364|ref|ZP_05525795.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289771263|ref|ZP_06530641.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799203|emb|CAB90919.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701462|gb|EFD68891.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 252

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 163 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 222

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 223 HVRNILEKLQLHSRMEAVVYAMREKIL 249


>gi|213581754|ref|ZP_03363580.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 198

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 13/192 (6%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++ F+   L  ++    EV +       + ++    L      +     ++RE 
Sbjct: 126 PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREK 185

Query: 180 SCLQLAGDGYTS 191
             L+   +G TS
Sbjct: 186 EILKWTAEGKTS 197


>gi|118593080|ref|ZP_01550467.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118434387|gb|EAV41041.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 233

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 4/182 (2%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII--WQSIQEETVIESSGQLSVRL 108
           +                      D FL H  +  + +      +     +    +  +  
Sbjct: 48  VTVRTTLSDGFQTFYWENGYQKDDPFLRHCMTSPVAVATGADYLDRYDYLNERSRRLILS 107

Query: 109 EGGLLPFAGIAF--PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
                  AG +   PV       G+ I +S        +  E        +         
Sbjct: 108 AAEDGFRAGFSVVAPVPEQRRALGWNIGSSLRRAEVERIRQEREPLIRLALVAVQNRLDG 167

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             +   +LT RE  CL L   G   + IA +LG+   TV  +LG+A  KL A  R  A+A
Sbjct: 168 PEAVRASLTPRELECLSLIASGLRVKAIAAELGIQPVTVELHLGNARKKLGAATREHAVA 227

Query: 227 KA 228
            A
Sbjct: 228 LA 229


>gi|194015561|ref|ZP_03054177.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
 gi|194012965|gb|EDW22531.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
          Length = 229

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+  DG ++  I E L +S  TV  ++ +   K++  NR QA+  AI
Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNNRTQAVVVAI 221

Query: 230 RFGYI 234
           + G++
Sbjct: 222 KNGWV 226


>gi|190890349|ref|YP_001976891.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695628|gb|ACE89713.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 248

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 18/225 (8%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69
           +S   L   L  +   + A ++ L   +                ++  D       +++ 
Sbjct: 40  ASTGRLQSGLRALTEYVGASHYLLARCDL---IQESGLDFVVSSDWPFDLVKDIANDLVS 96

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                  L        P  +  + E   +                    +    +G  + 
Sbjct: 97  GYARSTELEKCMQVFQP-NFALLPESAAVPEGAS-----------RQYCSLTFNVGRSRL 144

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             +    E  +L+ E + +       V   FL     R      LT+RE  CL    +G 
Sbjct: 145 ALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGARVDRDFELTDRELECLFWIAEGK 203

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS+EIA  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 204 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|47568528|ref|ZP_00239227.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|228988639|ref|ZP_04148725.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47554770|gb|EAL13122.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|228771090|gb|EEM19570.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K          LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPFIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA   A++ G +
Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|30023441|ref|NP_835072.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228961674|ref|ZP_04123282.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229051082|ref|ZP_04194629.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH676]
 gi|229112824|ref|ZP_04242356.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-15]
 gi|229130659|ref|ZP_04259615.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-Cer4]
 gi|229147955|ref|ZP_04276296.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST24]
 gi|296505833|ref|YP_003667533.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
 gi|29899002|gb|AAP12273.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228635605|gb|EEK92094.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST24]
 gi|228652998|gb|EEL08880.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-Cer4]
 gi|228670658|gb|EEL25970.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-15]
 gi|228722293|gb|EEL73691.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH676]
 gi|228798024|gb|EEM45029.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|296326885|gb|ADH09813.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K   ++     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|163943094|ref|YP_001647978.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014574|ref|ZP_04171690.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
 gi|229065062|ref|ZP_04200357.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH603]
 gi|229136229|ref|ZP_04264978.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST196]
 gi|229170116|ref|ZP_04297805.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH621]
 gi|163865291|gb|ABY46350.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
 gi|228613347|gb|EEK70483.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH621]
 gi|228647209|gb|EEL03295.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST196]
 gi|228716204|gb|EEL67920.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH603]
 gi|228746726|gb|EEL96613.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L   +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPQEEKEEEPSVQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA   A++ G +
Sbjct: 190 MSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|192822729|gb|ACF06195.1| PanR [Pantoea sp. CWB304]
          Length = 246

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 20/231 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           ++  L           +A   IN           +  L N+  D  ++         D  
Sbjct: 15  INDHLAEKIEFYGDVKYAYAIINKENPIE-----MMVLTNH-ADWVELYLKNNYQLVDPV 68

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--- 133
           +    S +   +W         +    +  R+       +G  F +    +    +    
Sbjct: 69  IIKCLSSVESFLWDE-DIMFKAQYKLPMIFRMGKNYDIKSGCTFVLHDYNNNMALLSIMM 127

Query: 134 --FTSE--------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                E               ++I AH     +  +  E+ ++       LT RE   L 
Sbjct: 128 GEHCREETKTSILNDRDRLQSLLISAHTKILSLYQEESEIIQQEKKKPGLLTSRENDVLY 187

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LA  G T  EIA  L +   TV  ++ +   KL  +N   AI   I    I
Sbjct: 188 LASQGKTYSEIACSLKVKEVTVKFHMANVVKKLGVMNAKHAINLGIELKLI 238


>gi|16080361|ref|NP_391188.1| two-component response regulator YvqE responding to cell wall
           stress [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311254|ref|ZP_03593101.1| hypothetical protein Bsubs1_17956 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315581|ref|ZP_03597386.1| hypothetical protein BsubsN3_17872 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320496|ref|ZP_03601790.1| hypothetical protein BsubsJ_17835 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324780|ref|ZP_03606074.1| hypothetical protein BsubsS_17986 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312856|ref|YP_004205143.1| two-component response regulator YvqE [Bacillus subtilis BSn5]
 gi|68051995|sp|O32197|LIAR_BACSU RecName: Full=Transcriptional regulatory protein liaR
 gi|2635805|emb|CAB15298.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. subtilis str. 168]
 gi|2832821|emb|CAA11745.1| YvqC protein [Bacillus subtilis]
 gi|320019130|gb|ADV94116.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis BSn5]
          Length = 211

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V++      +       +LT+RE   L L  +G T++EI E+L +++ TV  ++ +
Sbjct: 129 VAGKVLSRLRHSGENALP-HESLTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITN 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLD  +R QA   A R   +
Sbjct: 188 ILSKLDVSDRTQAAVYAHRNHLV 210


>gi|163848189|ref|YP_001636233.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222526094|ref|YP_002570565.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163669478|gb|ABY35844.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449973|gb|ACM54239.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLG 199
           I +   A  +V    LE F++             L+ RE   L+L   G+T+ EIA +L 
Sbjct: 127 INDLVLASPEVAATVLEAFRQMVGDDDIQTIFSPLSARELEVLELVAAGHTNREIAARLD 186

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TV  ++ S   KL   +R QA+  A+R G+I
Sbjct: 187 ISNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 221


>gi|167464395|ref|ZP_02329484.1| Two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 241

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                L       S +  LT+RE   L+L  +G +++ I E L +S  TV  ++ S   K
Sbjct: 164 AHDSALRY---IDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQK 220

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           ++  +R QA+  AI+ G++
Sbjct: 221 MEVDDRTQAVIIAIKNGWV 239


>gi|297571014|ref|YP_003696788.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931361|gb|ADH92169.1| two component transcriptional regulator, LuxR family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 230

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               ++ TD + L   +     +LT+RE     L   G T+ EIA++L ++  TV  ++ 
Sbjct: 140 RLVDRLATDSIRLHASKPEVLDDLTDREREVFYLIARGLTNTEIADRLYVAEATVKTHVT 199

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               KL   +R+QA+  A   G 
Sbjct: 200 RIFAKLGVRDRVQAVVIAYEAGI 222


>gi|218673112|ref|ZP_03522781.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 96

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/95 (68%), Positives = 79/95 (83%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            L++++I+E HG C  ++ D L L ++R+ AA  L+ERE +CLQLAGDG  SEEIAEKLG
Sbjct: 1   DLSSDMIVELHGRCCHIMMDLLSLDERRTGAAEALSEREIACLQLAGDGRISEEIAEKLG 60

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 61  LSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 95


>gi|328882798|emb|CCA56037.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 250

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 161 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 220

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 221 HVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|326334186|ref|ZP_08200409.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae
           bacterium Broad-1]
 gi|325947977|gb|EGD40094.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae
           bacterium Broad-1]
          Length = 212

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAE 196
            ++   + +I    A   +          RS      LT+RE   L L   G  + EIA+
Sbjct: 112 RVVADGQSLISPSMAAKLMEEFKQMARPDRSPVPGPKLTDRELEVLGLVAKGLNNREIAK 171

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L +S +TV  ++ +   KL A +R++A+  A+R   +
Sbjct: 172 RLFISENTVKNHVRNILEKLQAHSRMEAVMYAVRQKLL 209


>gi|229089048|ref|ZP_04220402.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-44]
 gi|228694270|gb|EEL47892.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-44]
          Length = 215

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L   +    +      LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IASSLLSQTLPQEEAEVPSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA   A++ G +
Sbjct: 190 VSSILSKLQLSDRTQAALYAVKNGIV 215


>gi|291485797|dbj|BAI86872.1| hypothetical protein BSNT_04924 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 211

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V++      +       +LT+RE   L L  +G T++EI E+L +++ TV  ++ +
Sbjct: 129 VAGKVLSRLRHSGENELP-HESLTKRELEILFLIAEGKTNKEIGEELFITIKTVKTHITN 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLD  +R QA   A R   +
Sbjct: 188 ILSKLDVSDRTQAAVYAHRNHLV 210


>gi|241203092|ref|YP_002974188.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856982|gb|ACS54649.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 18/225 (8%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69
           +S   L   L  + + + A     Y +                 ++  D       +++ 
Sbjct: 40  ASTGRLQSGLRALTDYVGAS---YYLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVR 96

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                  L        P  +  + +   +                    +    +G  + 
Sbjct: 97  GYARSTELEKCMQVFQP-NFALLPDSAEVPDGAS-----------RQYCSVTFNVGRSRL 144

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             +    E  +L+ E + +       V   FL     +      LT+RE  CL    +G 
Sbjct: 145 ALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGTKVDRDFELTDRELECLFWIAEGK 203

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS+EIA  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 204 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|254392873|ref|ZP_05008042.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812928|ref|ZP_06771571.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706529|gb|EDY52341.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325527|gb|EFG07170.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 269

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 180 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 239

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 240 HVRNILEKLQLHSRMEAVVYAMREKIL 266


>gi|295402434|ref|ZP_06812387.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112712|ref|YP_003991028.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975525|gb|EFG51150.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217813|gb|ADP76417.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 210

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L L   G T++EIA++L ++V TV  ++ +   KL   +R QA+  A 
Sbjct: 145 PHEELTNREMEVLLLMAQGKTNQEIADELFIAVKTVKVHVSNILSKLGVQDRTQAVIYAF 204

Query: 230 RFGYI 234
           +   +
Sbjct: 205 KHSLV 209


>gi|239930904|ref|ZP_04687857.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439281|ref|ZP_06578671.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342176|gb|EFE69132.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 159 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 218

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 219 HVRNILEKLQLHSRMEAVVYAMREKIL 245


>gi|311031947|ref|ZP_07710037.1| two-component response regulator DegU [Bacillus sp. m3-13]
          Length = 239

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG +++ I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 172 PLHLLTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 231

Query: 230 RFGYI 234
           + G++
Sbjct: 232 KNGWV 236


>gi|238796086|ref|ZP_04639597.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238720031|gb|EEQ11836.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 240

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 18/199 (9%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107
                 + N+     +        + D  L      ++P  W                  
Sbjct: 41  PSDFVVISNW-KKWFEFYTQNNFQFTDPVLLMAAHRIMPFSWDENIILKFP-----RLFD 94

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL 163
           +        G  F +         +  +++  +   E+I +                  L
Sbjct: 95  MAKEYNMINGYTFVLHDQHSNLVVLSLSADKNIDVEEIIGDDKGNIQLLLMITHEKMTSL 154

Query: 164 FKKRSSAA--------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +K  +S             + RE   +  A  G + +EIA  LG+ + T+  ++G    K
Sbjct: 155 YKDLNSKNNYYKMNGNEIFSNRENEIIYWASVGKSYQEIALILGVKLTTIKNHMGKVVRK 214

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   N   AI+ A+    I
Sbjct: 215 LGVTNAKHAISIAVELQLI 233


>gi|296331212|ref|ZP_06873685.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675910|ref|YP_003867582.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151663|gb|EFG92539.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414154|gb|ADM39273.1| two-component response regulator [liaS] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 211

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V++      +       +LT+RE   L L  +G T++EI E+L +++ TV  ++ +
Sbjct: 129 VAGKVLSRLRHSGEHALP-HESLTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITN 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLD  +R QA   A R   +
Sbjct: 188 ILSKLDVSDRTQAAVYAHRNHLV 210


>gi|307943595|ref|ZP_07658939.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307773225|gb|EFO32442.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 232

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 11/218 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L  +L  +   I     AL  ++   +  +        H  D             + D+ 
Sbjct: 25  LEAQLTNLSATIGFS--ALKALHVRRENSKTSYRFVSAHR-DAGWQLQVGRSSPIFSDEL 81

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           + +                T  + +   +          + +  P       +G + F  
Sbjct: 82  IENAARQKTAF--------TKHDCAAGRTNNPTDDQTSASTVFVPTFDRCGLSGLIAFIG 133

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
               L+  +I   H A     + F  L  + ++   +LT RE  CL+ + +G TS EIAE
Sbjct: 134 IPSDLSGVIINLLHLAGLYTSSRFAALLFEEATNPTDLTPREVECLKWSSNGLTSSEIAE 193

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KLG+S HT + YL  AT KL A NR  A+  A R G I
Sbjct: 194 KLGISRHTADWYLKEATQKLGAQNRTHAVMIAYRKGLI 231


>gi|311069822|ref|YP_003974745.1| two-component response regulator YvqE [Bacillus atrophaeus 1942]
 gi|310870339|gb|ADP33814.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus atrophaeus 1942]
          Length = 211

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L      +     LT+RE   L L  +G T++EI E+L +++ TV  ++ +   KL+  +
Sbjct: 137 LRHSNDSALPHETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHVTNILSKLEVAD 196

Query: 221 RIQAIAKAIRFGYI 234
           R QA   A R   +
Sbjct: 197 RTQAAVYAHRNKLV 210


>gi|228942557|ref|ZP_04105092.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228975490|ref|ZP_04136045.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228982123|ref|ZP_04142415.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis Bt407]
 gi|228777661|gb|EEM25936.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis Bt407]
 gi|228784284|gb|EEM32308.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817150|gb|EEM63240.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326943209|gb|AEA19105.1| two-component response regulator yhcZ [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    S     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEHSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|259046510|ref|ZP_05736911.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259036675|gb|EEW37930.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 211

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +LT+RE   L L   G +++EIA++L +++ TV  ++ +   KL+  +R QA   A 
Sbjct: 145 PHDDLTQRELEVLLLIAQGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAF 204

Query: 230 RFGYI 234
           +   I
Sbjct: 205 KHQLI 209


>gi|303241719|ref|ZP_07328216.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302590720|gb|EFL60471.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  K  S   NLT RE   L+L  +G  ++EIA++L +S  TV  ++ +   KL+  +R 
Sbjct: 144 LHDKSKSEESNLTAREVEVLELIAEGMINKEIAKRLYISEKTVKNHVSNIFRKLNVSDRT 203

Query: 223 QAIAKAIRFGY 233
           QA   A +   
Sbjct: 204 QAAIYAFKHNM 214


>gi|228907170|ref|ZP_04071032.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL
           200]
 gi|228852502|gb|EEM97294.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL
           200]
          Length = 199

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 129 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 189 VIYAFRHQL 197


>gi|156744333|ref|YP_001434462.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235661|gb|ABU60444.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 231

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDF--LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              QV+  F  +   +   S    L+ RE   L+L   G T++EIA+ L +S  TV  ++
Sbjct: 137 VAAQVLNAFRQMAAEEDTQSIYSPLSPRELQVLELVAAGRTNKEIAKVLDISNQTVKNHI 196

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   KL   +R QA+  A+R G+I
Sbjct: 197 SSILRKLAVNDRTQAVVYAMRRGWI 221


>gi|295696008|ref|YP_003589246.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295411610|gb|ADG06102.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 223

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGD 187
               I  +    +  + ++EA     +V+        +        LT+RE   L L  +
Sbjct: 113 RAAEIAQAIRAAVQGQSVLEAQ-VAAKVMARVRRPDGQNERPLHEQLTDREREVLLLLAE 171

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           GY+++E+A+ L + V TV  ++ +   KL   +R QA+  A + G +
Sbjct: 172 GYSNQEVADALHIGVKTVKFHVTNILDKLQVEDRTQAVIYAYKHGLV 218


>gi|157368315|ref|YP_001476304.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320079|gb|ABV39176.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 248

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 15/189 (7%)

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
           +  +        + D  L   +  + P  W                  +        G  
Sbjct: 52  EWFEFYTENNYQFIDPVLITASRRITPFSWDENIM-IDPGLKLPRIFDMAKNYNVVNGYT 110

Query: 120 FPVRLGFHKNGYVIFTSE-FLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAAR- 172
           F +    H    +    +       E  I                     +K+ +S    
Sbjct: 111 FVLHDHNHNLVVLSIMIDKNCDYNIEERIIANQDKLQMLLITTHDKLTAFYKEINSPTYF 170

Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                    ++RE   +  A  G + +EIA  LG+ + T+  ++G+A  KL   N   AI
Sbjct: 171 DKMNNKGIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAI 230

Query: 226 AKAIRFGYI 234
              +    I
Sbjct: 231 RLGVELQLI 239


>gi|326202012|ref|ZP_08191882.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
 gi|325987807|gb|EGD48633.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
          Length = 216

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L+++  S A NLT RE   L+L  +G  ++EIA+ L +S  TV  ++ +   KLD  +R 
Sbjct: 144 LYEQDKSIANNLTNREVEVLKLIAEGMINKEIAKTLYISEKTVKNHISNIFKKLDVNDRT 203

Query: 223 QAIAKAIRFGY 233
           QA   A +   
Sbjct: 204 QAAIYAFKHNI 214


>gi|159900552|ref|YP_001546799.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893591|gb|ABX06671.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 250

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGY 189
           V          N++++        V+  F +L            ++ RE   L+L   G 
Sbjct: 134 VDMVRSGNYPINDLVLNTPAVAAAVMDSFRQLTMDTHTEHVYSPMSPREIEVLELVAAGQ 193

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T++EIA +L +S  TV  ++ S   KL   +R QA+  A++ G+I
Sbjct: 194 TNKEIAARLEISNQTVKNHISSILRKLAVNDRTQAVVFALQRGWI 238


>gi|302388953|ref|YP_003824774.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199581|gb|ADL07151.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
          Length = 213

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +I ++  L +  S A+R LT RE   +    +G ++ EI+EKLG+S  TV  ++ S
Sbjct: 131 LTRALIAEYNRLSQPISRASRPLTAREKEVMAYIAEGMSNIEISEKLGISEKTVKNHVSS 190

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+ ++R Q    A++   +
Sbjct: 191 ILRKLNLMDRTQVAVYALKNNLV 213


>gi|222432077|gb|ACM50924.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 13/218 (5%)

Query: 29  KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88
              ++     +  +   +    +  + +Y  +  ++       + D  +    + + P  
Sbjct: 22  NLDHYDGVKFSFMVLNKKNPSEMIIISSYPDEWVNLYKANKYQHIDPVVLASFNKISPFS 81

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVI 146
           W+                 L        G  F +         +     S +    +  I
Sbjct: 82  WEKSLV-INTRLQLAKIFDLSKKYNIINGYTFVLHDHSDNLAMLSIIVDSSYPDDVDTFI 140

Query: 147 IE----AHGACYQVITDFLELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAE 196
            E                + L ++     + L      ++RE   L  A  G T  E+A 
Sbjct: 141 EEKKDTFQMLLIDAYEKIISLCREMIENKKPLNNKEIFSQRENEILYWASMGKTYLEVAI 200

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LG+   TV  ++G+   KL  +N   AI   +    I
Sbjct: 201 ILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 238


>gi|23099974|ref|NP_693440.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778205|dbj|BAC14475.1| two-component response regulator involved in degradative enzyme
           [Oceanobacillus iheyensis HTE831]
          Length = 230

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   LQL  DG ++  +AE L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 163 PLHLLTKRECQVLQLLADGKSNRAVAETLYISEKTVKNHVSNILQKMNVNDRTQAVVSAI 222

Query: 230 RFGYI 234
           R G++
Sbjct: 223 RKGWV 227


>gi|228955660|ref|ZP_04117658.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072878|ref|ZP_04206076.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           F65185]
 gi|229082623|ref|ZP_04215086.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock4-2]
 gi|229153573|ref|ZP_04281751.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1550]
 gi|228630177|gb|EEK86828.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1550]
 gi|228701055|gb|EEL53578.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock4-2]
 gi|228710221|gb|EEL62197.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           F65185]
 gi|228804029|gb|EEM50650.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++E+A  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEVASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|229181658|ref|ZP_04308983.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           172560W]
 gi|228601854|gb|EEK59350.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           172560W]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K    +     LT RE   LQL   G +++E+A  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEVASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|302534781|ref|ZP_07287123.1| two-component system response regulator [Streptomyces sp. C]
 gi|302443676|gb|EFL15492.1| two-component system response regulator [Streptomyces sp. C]
          Length = 270

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 181 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKQLFISENTVKN 240

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 241 HVRNILEKLQLHSRMEAVVYAMREKIL 267


>gi|257867775|ref|ZP_05647428.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257874102|ref|ZP_05653755.1| regulatory protein [Enterococcus casseliflavus EC10]
 gi|257801858|gb|EEV30761.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257808266|gb|EEV37088.1| regulatory protein [Enterococcus casseliflavus EC10]
          Length = 209

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSAARNLTERET 179
               GY++ TS    +A    I A     +V+           L  +      +LT RE 
Sbjct: 96  AGAAGYLLKTSTAHEIA--EAIRATQRGERVLEPEVTTKMMDRLTNRTPILHEDLTNREQ 153

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L L  +G +++EIA+ L +++ TV  ++ +   KL+  +R QA   A + G I
Sbjct: 154 EVLLLIAEGKSNQEIADALFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGLI 208


>gi|73662256|ref|YP_301037.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494771|dbj|BAE18092.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 207

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H     VI        K+   A  L++RE+  L     G T++EIAE L +S  T+  ++
Sbjct: 127 HPQAQHVIETV----SKKPHYANKLSKRESEVLTEMAKGKTNKEIAETLFVSEKTIKTHV 182

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL   +R QA   A++   I
Sbjct: 183 SHIFSKLQVTDRTQAAIYAMQNNLI 207


>gi|62249408|gb|AAX77679.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
 gi|84620011|gb|ABC59304.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum]
          Length = 242

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 60/199 (30%), Gaps = 13/199 (6%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107
              +  + +Y  +  ++       + D  +    + + P  W+                 
Sbjct: 41  PSEMLIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFD 99

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE----AHGACYQVITDFL 161
           L        G  F +         +     S +    +  I E                +
Sbjct: 100 LSKKYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVDTFIEEKKDTFQMLLIDAYEKII 159

Query: 162 ELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            L ++   + + L      ++RE   L  A  G T  E+A  LG+   TV  ++G+   K
Sbjct: 160 SLCREMIESKKQLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKK 219

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L  +N   AI   +    I
Sbjct: 220 LGVLNAKHAIRLGVELQLI 238


>gi|94984662|ref|YP_604026.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554943|gb|ABF44857.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 228

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTERET 179
               GY++  +    L   V          H A  + + +     +  +     L+ RE 
Sbjct: 109 AGAAGYLLKNASEDELLGAVRAVAAGESALHPAVARKVLERFSTHQTPTPPEDALSPREL 168

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L++A  G T++EIA  L +S  TV  +L +   KL   +R +A+   I+ G+I
Sbjct: 169 EVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYGIKRGWI 223


>gi|254422719|ref|ZP_05036437.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190208|gb|EDX85172.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 235

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LTERE   L+    G ++ +IAEKL ++V TV  ++ +   KL A +R QA  +A+R
Sbjct: 171 AYPLTERELEILECIVSGCSNAQIAEKLFVTVGTVKTHVRNILNKLGASDRTQAAVRALR 230

Query: 231 FGYI 234
            G I
Sbjct: 231 AGLI 234


>gi|253575241|ref|ZP_04852579.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845238|gb|EES73248.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 221

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + +     K  + A   LTERE   L+L   G ++++IA++L + + TV  ++ +   KL
Sbjct: 143 MMNRFRQPKVEAPAHEELTEREMDVLRLLAQGKSNQDIADELIIGIKTVKFHVTNILAKL 202

Query: 217 DAVNRIQAIAKAIRFGY 233
              +R QA   A + G 
Sbjct: 203 GVEDRTQAAIYAYKNGL 219


>gi|229547584|ref|ZP_04436309.1| LuxR family response regulator [Enterococcus faecalis TX1322]
 gi|256852497|ref|ZP_05557873.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           T8]
 gi|229307274|gb|EEN73261.1| LuxR family response regulator [Enterococcus faecalis TX1322]
 gi|256712351|gb|EEU27383.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           T8]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                 L KK+      +LT RE   L L   G +++EIA++L +++ TV  ++ +   K
Sbjct: 131 HKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAK 190

Query: 216 LDAVNRIQAIAKAIRFGY 233
           LD  +R QA   A + G 
Sbjct: 191 LDVDDRTQAAIYAFQHGL 208


>gi|15672873|ref|NP_267047.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723822|gb|AAK04989.1|AE006323_4 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406436|gb|ADZ63507.1| two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 209

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLT 175
            FP  L     GY++ TS+   +A+ +   A+G       V     +   ++     +L+
Sbjct: 92  VFPA-LAAGAKGYILKTSQAADIASAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLS 150

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L++   G +++EIA++L +S+ TV  ++ +   KL+  +R QA   AI+   +
Sbjct: 151 KRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209


>gi|322382401|ref|ZP_08056304.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153618|gb|EFX45997.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 230

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                L       S +  LT+RE   L+L  +G +++ I E L +S  TV  ++ S   K
Sbjct: 153 AHDSALRY---IDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQK 209

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           ++  +R QA+  AI+ G++
Sbjct: 210 MEVDDRTQAVIIAIKNGWV 228


>gi|281491392|ref|YP_003353372.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375126|gb|ADA64642.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 209

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLT 175
            FP  L     GY++ TS+   +A+ +   A+G       V     +   ++     +L+
Sbjct: 92  VFPA-LAAGAKGYILKTSQAADIASAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLS 150

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L++   G +++EIA++L +S+ TV  ++ +   KL+  +R QA   AI+   +
Sbjct: 151 KRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209


>gi|29377375|ref|NP_816529.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           V583]
 gi|227554359|ref|ZP_03984406.1| LuxR family response regulator [Enterococcus faecalis HH22]
 gi|255970859|ref|ZP_05421445.1| regulatory protein [Enterococcus faecalis T1]
 gi|255974434|ref|ZP_05425020.1| regulatory protein [Enterococcus faecalis T2]
 gi|256618304|ref|ZP_05475150.1| regulatory protein [Enterococcus faecalis ATCC 4200]
 gi|256761234|ref|ZP_05501814.1| regulatory protein [Enterococcus faecalis T3]
 gi|256958147|ref|ZP_05562318.1| regulatory protein [Enterococcus faecalis DS5]
 gi|256960293|ref|ZP_05564464.1| regulatory protein [Enterococcus faecalis Merz96]
 gi|256962729|ref|ZP_05566900.1| regulatory protein [Enterococcus faecalis HIP11704]
 gi|257077420|ref|ZP_05571781.1| regulatory protein [Enterococcus faecalis JH1]
 gi|257080715|ref|ZP_05575076.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           E1Sol]
 gi|257083389|ref|ZP_05577750.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           Fly1]
 gi|257088053|ref|ZP_05582414.1| regulatory protein [Enterococcus faecalis D6]
 gi|257091132|ref|ZP_05585493.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           CH188]
 gi|257417079|ref|ZP_05594073.1| regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257417793|ref|ZP_05594787.1| luxR family DNA-binding response regulator [Enterococcus faecalis
           T11]
 gi|257420589|ref|ZP_05597579.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|294779660|ref|ZP_06745051.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300861047|ref|ZP_07107134.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|29344842|gb|AAO82599.1| DNA-binding response regulator, LuxR family [Enterococcus faecalis
           V583]
 gi|227176505|gb|EEI57477.1| LuxR family response regulator [Enterococcus faecalis HH22]
 gi|255961877|gb|EET94353.1| regulatory protein [Enterococcus faecalis T1]
 gi|255967306|gb|EET97928.1| regulatory protein [Enterococcus faecalis T2]
 gi|256597831|gb|EEU17007.1| regulatory protein [Enterococcus faecalis ATCC 4200]
 gi|256682485|gb|EEU22180.1| regulatory protein [Enterococcus faecalis T3]
 gi|256948643|gb|EEU65275.1| regulatory protein [Enterococcus faecalis DS5]
 gi|256950789|gb|EEU67421.1| regulatory protein [Enterococcus faecalis Merz96]
 gi|256953225|gb|EEU69857.1| regulatory protein [Enterococcus faecalis HIP11704]
 gi|256985450|gb|EEU72752.1| regulatory protein [Enterococcus faecalis JH1]
 gi|256988745|gb|EEU76047.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           E1Sol]
 gi|256991419|gb|EEU78721.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           Fly1]
 gi|256996083|gb|EEU83385.1| regulatory protein [Enterococcus faecalis D6]
 gi|256999944|gb|EEU86464.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           CH188]
 gi|257158907|gb|EEU88867.1| regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257159621|gb|EEU89581.1| luxR family DNA-binding response regulator [Enterococcus faecalis
           T11]
 gi|257162413|gb|EEU92373.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|294453317|gb|EFG21728.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850086|gb|EFK77836.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|323478876|gb|ADX78315.1| response regulator [Enterococcus faecalis 62]
 gi|327536064|gb|AEA94898.1| DNA-binding response regulator [Enterococcus faecalis OG1RF]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSA-ARNLTERE 178
               GY++ TS    +A    I A     +V+           L KK+      +LT RE
Sbjct: 96  AGAAGYLLKTSTAHEIA--DAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L   G +++EIA++L +++ TV  ++ +   KLD  +R QA   A + G 
Sbjct: 154 HEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 208


>gi|218678644|ref|ZP_03526541.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 172

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +  P+     +   ++ + E        I +      ++     E        +  LT+R
Sbjct: 56  LFIPLFTPEGRRYCLVLSGERQEPDQGEIADMLLDAMRIFDKLYE-EILTPEMSGRLTQR 114

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   ++   +G TS EIA  LGLS HTVN+++ +A  KLDAVNR+  +A A+R G +
Sbjct: 115 EQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 171


>gi|50119067|ref|YP_048234.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609593|emb|CAG73026.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 242

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 59/196 (30%), Gaps = 13/196 (6%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           +  + +Y  +  ++       + D  +    + + P  W+                 L  
Sbjct: 44  MIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFDLSK 102

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEA----HGACYQVITDFLELF 164
                 G  F +         +     + +       I E          +     + L 
Sbjct: 103 KYDIINGYTFVLHDHGDNLAMLSIIVDNSYPDDVETFIEERKDIFQMLLIEAYEKIISLC 162

Query: 165 KKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           K+     + L      ++RE   L  A  G T  E+A  LG+   TV  ++G+   KL  
Sbjct: 163 KEMIGNKKQLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 219 VNRIQAIAKAIRFGYI 234
           +N   AI   +    I
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|257876663|ref|ZP_05656316.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|325571030|ref|ZP_08146602.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257810829|gb|EEV39649.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|325156115|gb|EGC68301.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 209

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSAARNLTERET 179
               GY++ TS    +A    I A     +V+           L  +      +LT RE 
Sbjct: 96  AGAAGYLLKTSTAHEIA--EAIRATQRGERVLEPEVTTKMMDRLTNRTPILHEDLTNREQ 153

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L L  +G +++EIA+ L +++ TV  ++ +   KL+  +R QA   A + G I
Sbjct: 154 EVLLLIAEGKSNQEIADSLFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGLI 208


>gi|229918078|ref|YP_002886724.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
 gi|229469507|gb|ACQ71279.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
          Length = 211

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L     +   +LT RE   LQL  +G +++ IA++L +S+ TV  ++ +   KLD  +R
Sbjct: 136 RLRHPEMTLHESLTAREREILQLMAEGKSNQVIADELFISLKTVKTHVSNILTKLDVYDR 195

Query: 222 IQAIAKAIRFGYI 234
            QA+  A +   +
Sbjct: 196 TQAVVYAFQHNLV 208


>gi|309792258|ref|ZP_07686730.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308225799|gb|EFO79555.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 229

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 144 EVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           E+++       QV++ F ++   +   S    L+ RE   L+L   G T++EIA  L +S
Sbjct: 129 EMVLALPDVAAQVLSAFRQMVIDEDTQSIFSPLSPRELEVLELVAAGRTNKEIALNLDIS 188

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  ++ S   KL   +R QA+  A+R G+I
Sbjct: 189 NQTVKNHVSSILRKLAVNDRTQAVVYAMRRGWI 221


>gi|229094522|ref|ZP_04225591.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-42]
 gi|228688906|gb|EEL42736.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-42]
          Length = 215

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K   ++     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANALLSQTLPVEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA   A++ G +
Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|229035051|ref|ZP_04188998.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1271]
 gi|228728236|gb|EEL79265.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1271]
          Length = 215

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K   ++     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANTLLSQTLPVEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|253997049|ref|YP_003049113.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983728|gb|ACT48586.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8]
          Length = 243

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-----LELFKKRSSAAR 172
              P+ +G    G +  + + L L+   +I        +         +    K  +   
Sbjct: 121 YLIPIAIGQQSVGLIALSGQNLQLSPHELITLQSISGILGLALKQASSMSAEDKDLTVIE 180

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE     L   G ++ E+A KLG+S  TV  ++     KL+  +R QA  KA   G
Sbjct: 181 HLTPREREVFALLPSGLSNRELATKLGISAGTVKIHVERVLSKLNLRDRTQAAVKAYELG 240

Query: 233 Y 233
           Y
Sbjct: 241 Y 241


>gi|20808107|ref|NP_623278.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254479031|ref|ZP_05092387.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516692|gb|AAM24882.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035027|gb|EEB75745.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 208

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + LT RE   L+L   GY+++EIA+KL LS  TV  ++ +   KL   +R QA   
Sbjct: 143 KELTPREIEILKLLSQGYSNKEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQAAIY 198


>gi|294054035|ref|YP_003547693.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613368|gb|ADE53523.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 208

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   LQL G+G +++EIA+ + +S+ TV  ++ +   KL A +R QA+  A + 
Sbjct: 144 EELTPRELEVLQLLGEGQSNKEIADVMDISLSTVKIHVTNIRDKLGAADRTQAVVIAFKR 203

Query: 232 GYI 234
           G +
Sbjct: 204 GIL 206


>gi|329935958|ref|ZP_08285759.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304565|gb|EGG48442.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 254

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 165 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 224

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 225 HVRNILEKLQLHSRMEAVVYAMREKIL 251


>gi|227114479|ref|ZP_03828135.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 242

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 59/199 (29%), Gaps = 13/199 (6%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107
              +  + +Y  +  ++       + D  +    + + P  W+                 
Sbjct: 41  PSEMIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFD 99

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE----AHGACYQVITDFL 161
           L        G  F +         +     S +    +  I E                +
Sbjct: 100 LSKKYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDIDTFIEEKKDTFQMLLIDAYEKII 159

Query: 162 ELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            L ++     + L      ++RE   L  A  G T  E+A  LG+   TV  ++G+   K
Sbjct: 160 SLCREMIENKKPLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKK 219

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L  +N   AI   +    I
Sbjct: 220 LGVLNAKHAIRLGVELQLI 238


>gi|150390890|ref|YP_001320939.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950752|gb|ABR49280.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 217

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 152 ACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              Q++ +F        +      LT+RE   L L  +G  ++EIA  L +S  TV  ++
Sbjct: 131 LASQLVKEFNRRDDHHDKEPREGKLTKREYEVLTLIAEGQNNKEIASNLFISEKTVKNHV 190

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
            +   K+   +R QA   A +   
Sbjct: 191 SNIFKKIHVNDRTQAAIYAYKHNI 214


>gi|262283887|gb|ACY40751.1| VisN [Rhizobium leguminosarum bv. viciae]
          Length = 262

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 18/225 (8%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69
           +S   L   L  + + + A ++ L   +                ++  D       +++ 
Sbjct: 54  ASTGRLQSGLRALTDYVGASHYLLARCDL---LQESGLDFIVSSDWPFDLVRDIANDLVR 110

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                  L        P  +  + +   +                    +    +G  + 
Sbjct: 111 GYARSTELEKCMQVFQP-NFALLPDSAEVPDGAS-----------RQYCSVTFNVGRSRL 158

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             +    E  +L+ E + +       V   FL     +      LT+RE  CL    +G 
Sbjct: 159 ALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGTKVDRDFELTDRELECLFWIAEGK 217

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS+EIA  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 218 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262


>gi|187920713|ref|YP_001889745.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719151|gb|ACD20374.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 333

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 16/227 (7%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             R+  ++ RIK   F  ++ ++       + +                       D  +
Sbjct: 102 QDRIEFVRQRIKQLGFDSFSYSATRTSAHHKTMFVLTSYESHSWLTRYFRERYFELDPRV 161

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL------LPFAGIAFPVRLGFHKNGY 131
              +   LP +W +      +  +   S RL G +         +GI   + L   +   
Sbjct: 162 ALASPTGLPFLWNTADMRADLPRAQMRSERLGGLIDMLEVTGRKSGILTQMPLPEPELSA 221

Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS--C 181
            +  +  +         +  E ++ AH     + T    +     +  + +T  E     
Sbjct: 222 SLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGIAPAQQQRVTLSELQHAV 281

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L+    G   +EIA  LGLS H V+ +L       +  NR+Q I  A
Sbjct: 282 LKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328


>gi|315030865|gb|EFT42797.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
          Length = 206

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                 L KK+      +LT RE   L L   G +++EIA++L +++ TV  ++ +   K
Sbjct: 127 HKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAK 186

Query: 216 LDAVNRIQAIAKAIRFGY 233
           LD  +R QA   A + G 
Sbjct: 187 LDVDDRTQAAIYAFQHGL 204


>gi|228900120|ref|ZP_04064353.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL
           4222]
 gi|228859526|gb|EEN03953.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL
           4222]
          Length = 199

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 129 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 189 VIYAFRHQL 197


>gi|308177198|ref|YP_003916604.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307744661|emb|CBT75633.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 230

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 46/99 (46%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            + ++  +            +  +  +  +   +A  +LT RE     L   G ++ EIA
Sbjct: 130 GDAVIAPSTTRRLLDHMTPMLKKNAAQHDEHLIAAVESLTPREREVFGLIAVGLSNPEIA 189

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EKL LS  TV  ++G    KL+A +R+QA+  A + G +
Sbjct: 190 EKLFLSEATVKTHVGHILAKLEARDRVQAVVIAYQTGVV 228


>gi|51893866|ref|YP_076557.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857555|dbj|BAD41713.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 37/86 (43%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H    Q +   L    K S+    +T RE   L+L   G +++EI E+L +   TV  +
Sbjct: 125 LHPVAAQRMMQELTAPPKASAGVEEITPRELEVLKLIAQGLSNKEIGERLFIGERTVKTH 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +     KL   +R Q    A++   +
Sbjct: 185 VSHLLEKLQLQDRTQLAIYALQNKLV 210


>gi|227518222|ref|ZP_03948271.1| LuxR family response regulator [Enterococcus faecalis TX0104]
 gi|229548209|ref|ZP_04436934.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200]
 gi|293382160|ref|ZP_06628103.1| DNA-binding response regulator VraR [Enterococcus faecalis R712]
 gi|293388529|ref|ZP_06633033.1| DNA-binding response regulator VraR [Enterococcus faecalis S613]
 gi|307268836|ref|ZP_07550203.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272676|ref|ZP_07553924.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307275104|ref|ZP_07556258.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307278542|ref|ZP_07559614.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307287394|ref|ZP_07567453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307290831|ref|ZP_07570725.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900387|ref|ZP_07759697.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312902923|ref|ZP_07762120.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312905744|ref|ZP_07764766.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909060|ref|ZP_07767920.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952200|ref|ZP_07771078.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|227074318|gb|EEI12281.1| LuxR family response regulator [Enterococcus faecalis TX0104]
 gi|229306688|gb|EEN72684.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200]
 gi|291080443|gb|EFE17807.1| DNA-binding response regulator VraR [Enterococcus faecalis R712]
 gi|291082133|gb|EFE19096.1| DNA-binding response regulator VraR [Enterococcus faecalis S613]
 gi|306498140|gb|EFM67663.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306501567|gb|EFM70863.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504779|gb|EFM73977.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508222|gb|EFM77338.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306510671|gb|EFM79693.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514840|gb|EFM83388.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310628223|gb|EFQ11506.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310629856|gb|EFQ13139.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310633695|gb|EFQ16978.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311290622|gb|EFQ69178.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311292477|gb|EFQ71033.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315028155|gb|EFT40087.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315032281|gb|EFT44213.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315036239|gb|EFT48171.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145424|gb|EFT89440.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315148783|gb|EFT92799.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151677|gb|EFT95693.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154523|gb|EFT98539.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315156392|gb|EFU00409.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315160117|gb|EFU04134.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315163264|gb|EFU07281.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165932|gb|EFU09949.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169340|gb|EFU13357.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315171806|gb|EFU15823.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315174757|gb|EFU18774.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315576264|gb|EFU88455.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578904|gb|EFU91095.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315582755|gb|EFU94946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|329573313|gb|EGG54926.1| response regulator protein VraR [Enterococcus faecalis TX1467]
          Length = 206

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSA-ARNLTERE 178
               GY++ TS    +A    I A     +V+           L KK+      +LT RE
Sbjct: 92  AGAAGYLLKTSTAHEIA--DAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNRE 149

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L   G +++EIA++L +++ TV  ++ +   KLD  +R QA   A + G 
Sbjct: 150 HEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 204


>gi|156741340|ref|YP_001431469.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232668|gb|ABU57451.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 230

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ----VITDFLELFK----KRSSAARNLT 175
           L     GY++  +    +   V     G  +     V+     L        ++    LT
Sbjct: 106 LRAGVAGYLLKDASRREIIGAVRQVLRGEAFLNPDLVLQTLRRLAHATPTDDATPIEPLT 165

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L+L   G T+ EIA +L +S  TV  ++     KL   +R QA  +A+  G +
Sbjct: 166 PREQQVLRLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGLV 224


>gi|312864942|ref|ZP_07725172.1| response regulator receiver domain protein [Streptococcus downei
           F0415]
 gi|311099562|gb|EFQ57776.1| response regulator receiver domain protein [Streptococcus downei
           F0415]
          Length = 213

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +      +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R Q
Sbjct: 138 HDQHPDLHDDLTARERDVLALLAKGYDNQTIADELFISLKTVKTHVSNILAKLNVEDRTQ 197

Query: 224 AIAKAIRFGYI 234
           A+  A +   +
Sbjct: 198 AVVYAFQHNLV 208


>gi|218896470|ref|YP_002444881.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543325|gb|ACK95719.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 200 VIYAFRHQL 208


>gi|149182159|ref|ZP_01860641.1| YhcZ [Bacillus sp. SG-1]
 gi|148850110|gb|EDL64278.1| YhcZ [Bacillus sp. SG-1]
          Length = 213

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H      +   +    +       LT RE   L+    G +++EIA  L ++  TV  +
Sbjct: 126 LHPKATNHLLKRVSRKNQPPHQIHQLTNRERDVLKELAKGKSNKEIAASLYITEKTVKTH 185

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   KL+  +R QA   A++ G 
Sbjct: 186 ISNIFAKLEVSDRTQAALYAVKHGL 210


>gi|219846976|ref|YP_002461409.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219541235|gb|ACL22973.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 229

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLG 199
           I +      +V    LE F++             L+ RE   L+L   G T+ EIA +L 
Sbjct: 127 INDLVLTSPEVAATVLEAFRQMVGDDDVQTVFSPLSARELEVLELVAAGRTNREIAAQLD 186

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TV  ++ S   KL   +R QA+  A+R G+I
Sbjct: 187 ISNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 221


>gi|289641016|ref|ZP_06473185.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289509136|gb|EFD30066.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 234

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +      +   +       LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 145 MASKLLSEFALMIKKADSRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLFISENTVKN 204

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 205 HIRNILEKLQLHSRMEAVVYAVREKLL 231


>gi|47569107|ref|ZP_00239795.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|47554178|gb|EAL12541.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
          Length = 132

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 62  KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 121

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 122 VIYAFRHQL 130


>gi|308070694|ref|YP_003872299.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
 gi|305859973|gb|ADM71761.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
          Length = 233

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 39/77 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + +     +  + A   LT+RE   L+L   G ++++IA++L + + TV  ++ +   KL
Sbjct: 155 MMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNLLAKL 214

Query: 217 DAVNRIQAIAKAIRFGY 233
              +R QA   A + G 
Sbjct: 215 GVEDRTQAAIYAYKNGL 231


>gi|152032260|gb|ABS28972.1| acyl-homoserine lactone transcriptional regulator [Burkholderia
           vietnamiensis]
          Length = 154

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 13/159 (8%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           NY     +          D  + H  S + P+IW++  +   ++                
Sbjct: 1   NYPQTWVERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEADQHGLR 55

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRS 168
            G   P        G +        +    + E               ++  L L +   
Sbjct: 56  HGWCMPSVSRTGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVP 114

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                LT RE   LQ +  G T  EI + + +   TV  
Sbjct: 115 EYTVELTVREREALQWSAAGKTYAEIGKIMHVDDRTVKF 153


>gi|323489235|ref|ZP_08094467.1| NarL family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
 gi|323397122|gb|EGA89936.1| NarL family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
          Length = 211

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 44/80 (55%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+T  ++  +       +LTERE   L L   G T++E+A++L ++V TV  ++ +   
Sbjct: 128 EVMTKMMKQMRHERVLHDDLTEREMEILLLLARGLTNQEVADQLFIAVKTVKTHVSNILA 187

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 188 KLEVHDRTQAVIYAFQHKLI 207


>gi|228911248|ref|ZP_04075053.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 200]
 gi|228848424|gb|EEM93273.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 200]
          Length = 215

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L + +K          LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IANTLLSQTLPVEEKEEEPFLQVGVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|220929282|ref|YP_002506191.1| LuxR family transcriptional regulator [Clostridium cellulolyticum
           H10]
 gi|219999610|gb|ACL76211.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulolyticum H10]
          Length = 216

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L+++  S   NLT RE   L+L  +G  ++EIA+ L +S  TV  ++ +   KLD  +R 
Sbjct: 144 LYEQDKSIINNLTNREVEVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKLDVNDRT 203

Query: 223 QAIAKAIRFGY 233
           QA   A +   
Sbjct: 204 QAAIYAFKHNI 214


>gi|157693950|ref|YP_001488412.1| response regulator DegU [Bacillus pumilus SAFR-032]
 gi|157682708|gb|ABV63852.1| response regulator DegU [Bacillus pumilus SAFR-032]
          Length = 229

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 221

Query: 230 RFGYI 234
           + G++
Sbjct: 222 KNGWV 226


>gi|271964817|ref|YP_003339013.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507992|gb|ACZ86270.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAARN 173
           +    L     GYV+  ++       V   A G           + +       S     
Sbjct: 106 SVFAALRAGARGYVLKGADGNDFIAAVRAVARGEAVYGPAVARRIRRFLTTGPESGPFPE 165

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L L   G ++ EIA +L LS  TV  +L S   KL   +R QA+ +A R G 
Sbjct: 166 LTQREREILDLLASGKSNAEIARRLFLSQKTVKNHLTSIFAKLQVADRTQAVVRARRAGL 225


>gi|158340472|ref|YP_001521466.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158310713|gb|ABW32327.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                 +      LT RE   L+L   G T++EIA+   LS  TV  ++ +  ++L   +
Sbjct: 142 RAGDAPKLPTDTPLTTRELEVLKLLAKGNTNKEIAKAFNLSEGTVKNHVSNILMRLGLRD 201

Query: 221 RIQAIAKAIRFGY 233
           R QA   A+  G 
Sbjct: 202 RTQAAVYAVEHGL 214


>gi|16080602|ref|NP_391429.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|154687664|ref|YP_001422825.1| DegU [Bacillus amyloliquefaciens FZB42]
 gi|221311500|ref|ZP_03593347.1| DegU [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315827|ref|ZP_03597632.1| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320742|ref|ZP_03602036.1| DegU [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221325027|ref|ZP_03606321.1| DegU [Bacillus subtilis subsp. subtilis str. SMY]
 gi|296330243|ref|ZP_06872724.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305676152|ref|YP_003867824.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|308175281|ref|YP_003921986.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|321313096|ref|YP_004205383.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|118438|sp|P13800|DEGU_BACSU RecName: Full=Transcriptional regulatory protein degU; AltName:
           Full=Protease production enhancer protein
 gi|143089|gb|AAA22545.1| iep protein [Bacillus subtilis]
 gi|143499|gb|AAA22733.1| degU protein (gtg start codon) [Bacillus subtilis]
 gi|143502|gb|AAA22735.1| protein kinase (put.); putative [Bacillus subtilis]
 gi|1762330|gb|AAC44938.1| transcriptional regulator of degradation enzymes [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2636075|emb|CAB15566.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|126363001|emb|CAM35818.1| two-component response regulator DegU [Bacillus amyloliquefaciens
           FZB42]
 gi|154353515|gb|ABS75594.1| DegU [Bacillus amyloliquefaciens FZB42]
 gi|206967377|gb|ACI22669.1| two-component response regulator DegU [Bacillus subtilis]
 gi|219937642|emb|CAJ97429.1| transcriptional regulatory protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152511|gb|EFG93379.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414396|gb|ADM39515.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|307608145|emb|CBI44516.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|320019370|gb|ADV94356.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|328913615|gb|AEB65211.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens
           LL3]
          Length = 229

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 221

Query: 230 RFGYI 234
           + G++
Sbjct: 222 KNGWV 226


>gi|224552990|gb|ACN54746.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 10/185 (5%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N + +  D+       + D  +      +    W++    +   +  ++          +
Sbjct: 28  NNNPEWFDVYLERKYQFIDPVIIRGLRSVEDYSWENKVILSEGYNLTRIFNESIQ-YNIY 86

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSA 170
            G  FP+    +    +       +  +E  IE H          +    L L+ +    
Sbjct: 87  QGRTFPLHDYLNNLVLLSVIG---LKDSEHDIENHRQKFISFLTNLHQKTLNLYSQHQQK 143

Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   L+    G T  E++  L ++  TV  ++G+   KL   N   A+    
Sbjct: 144 KNVFLSPREREILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGA 203

Query: 230 RFGYI 234
               +
Sbjct: 204 ELQLL 208


>gi|205372705|ref|ZP_03225516.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 212

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 35/75 (46%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +   +K S     LT RE   L L  +G T+ EI E L ++  TV  ++ +   KL   
Sbjct: 133 MMSRMRKPSHPHEELTNREMEILLLMAEGKTNSEIGEDLFIAHKTVKTHVSNILSKLGVQ 192

Query: 220 NRIQAIAKAIRFGYI 234
           +R QA+  A +   +
Sbjct: 193 DRTQAVIYAFQHSLV 207


>gi|239828352|ref|YP_002950976.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808645|gb|ACS25710.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. WCH70]
          Length = 225

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ +   KL+  +R QA+  AI
Sbjct: 158 PLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVVVAI 217

Query: 230 RFGYI 234
           + G++
Sbjct: 218 KNGWV 222


>gi|229084537|ref|ZP_04216810.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44]
 gi|228698773|gb|EEL51485.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44]
          Length = 196

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 126 KKEQPLYEDLTEREFEILMLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 185

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 186 VIYAFRHQL 194


>gi|229108996|ref|ZP_04238597.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15]
 gi|228674465|gb|EEL29708.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15]
          Length = 196

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 126 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 185

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 186 VIYAFRHQL 194


>gi|52082083|ref|YP_080874.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787473|ref|YP_093302.1| DegU [Bacillus licheniformis ATCC 14580]
 gi|319647951|ref|ZP_08002169.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2]
 gi|52005294|gb|AAU25236.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52349975|gb|AAU42609.1| DegU [Bacillus licheniformis ATCC 14580]
 gi|56310547|emb|CAE82205.1| two-component response regulator [Bacillus licheniformis]
 gi|106880136|emb|CAJ70739.1| two component response regulator [Bacillus licheniformis]
 gi|106880142|emb|CAJ70744.1| two component response regulator [Bacillus licheniformis]
 gi|317390292|gb|EFV71101.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2]
          Length = 229

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 221

Query: 230 RFGYI 234
           + G++
Sbjct: 222 KNGWV 226


>gi|228990549|ref|ZP_04150514.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM
           12442]
 gi|228996650|ref|ZP_04156289.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17]
 gi|229004298|ref|ZP_04162099.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4]
 gi|228757159|gb|EEM06403.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4]
 gi|228763282|gb|EEM12190.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17]
 gi|228769075|gb|EEM17673.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM
           12442]
          Length = 210

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 140 KKEQPLHEDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 200 VIYAFRHQL 208


>gi|295836933|ref|ZP_06823866.1| nitrate/nitrite response regulator [Streptomyces sp. SPB74]
 gi|295826282|gb|EDY45818.2| nitrate/nitrite response regulator [Streptomyces sp. SPB74]
          Length = 264

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 41/77 (53%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  ++ +   KL 
Sbjct: 185 SMIQRTDERRLVPAPRLTDREMDVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQ 244

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R++A+  A+R   +
Sbjct: 245 LHSRMEAVVYAMREKIL 261


>gi|224476907|ref|YP_002634513.1| putative two-component response regulator [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421514|emb|CAL28328.1| putative two-component response regulator [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 209

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RET  L+    G T++EIAE L +S  TV  ++     KL   +R QA   A+   
Sbjct: 148 KLSNRETEVLKEMAKGKTNKEIAEALYVSEKTVKTHVSHIFSKLQVTDRTQAAIYAMENK 207

Query: 233 YI 234
            I
Sbjct: 208 LI 209


>gi|209518905|ref|ZP_03267716.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209500628|gb|EEA00673.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 333

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 16/227 (7%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             R+  ++ RI+   F  ++  +       + +                       D  +
Sbjct: 102 QDRMEFVRQRIRQLGFDSFSYAATRTSSHHKTIFVLTSYESPAWLTRYFRERYFELDPRV 161

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLS------VRLEGGLLPFAGIAFPVRLGFHKNGY 131
              +   +P +W +      +  +   S      + +       +GI   + L       
Sbjct: 162 GLASPTGMPFMWNTADMRADLPRAQLRSERLGELIDMLEAAGRKSGILTRMPLPEPDLSA 221

Query: 132 VIFTSEFL--------MLANEVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSC 181
            +  +  +         +  E ++ AH     + T    +   +        L++ + + 
Sbjct: 222 SLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGIEPEQQQRVALSKLQYAV 281

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L+   +G   +EIA  LGLS H V+ +L       +  NR+Q I  A
Sbjct: 282 LKAVVEGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328


>gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 262

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 18/225 (8%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD--IPNILI 69
           +S   L   L  + + + A ++ L   +                ++  D       +++ 
Sbjct: 54  ASTGRLQSGLRALTDYVGASHYLLARCDL---LQESGLDFIVSSDWPFDLVRDIANDLVR 110

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                  L        P  +  + +   +                    +    +G  + 
Sbjct: 111 GYARSTELEKCMQVFQP-NFALLPDSAEVPDGAS-----------RQYCSVTFNVGRSRL 158

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             +    E  +L+ E + +       V   FL     +      LT+RE  CL    +G 
Sbjct: 159 SLMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGTKVDRDFELTDRELECLFWIAEGK 217

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TS+EIA  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 218 TSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262


>gi|295396928|ref|ZP_06807052.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294974862|gb|EFG50565.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 210

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             E+   R     +LT RE   LQL   G +++EIA++L +++ TV  ++ +   KL   
Sbjct: 135 AHEVEANRHHLHDDLTTREREVLQLIAAGKSNQEIADELFITLKTVKTHVSNILSKLGVE 194

Query: 220 NRIQAIAKAIRFGYI 234
           +R QA   A +   +
Sbjct: 195 DRTQATIYAFQNQLV 209


>gi|222432075|gb|ACM50923.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 13/218 (5%)

Query: 29  KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88
              ++     +  +   +    +  + +Y  +  ++       + D  +    + + P  
Sbjct: 22  NLDHYDGVKFSFMVLNKKNPSEMIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFS 81

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVI 146
           W+                 L        G  F +         +     S +    +  I
Sbjct: 82  WEKSLV-INTRLQLAKIFNLSKKYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVDTFI 140

Query: 147 IE----AHGACYQVITDFLELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAE 196
            E                + L ++     + L      ++RE   L  A  G T  E+A 
Sbjct: 141 EEKKDTFQMLLIDAYEKIISLCREMIENKKPLNNKEIFSQRENEILYWASMGKTYLEVAI 200

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LG+   TV  ++G+   KL  +N   AI   +    I
Sbjct: 201 ILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 238


>gi|126724410|ref|ZP_01740253.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705574|gb|EBA04664.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 203

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 16/185 (8%)

Query: 53  ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112
           E++++     D   ++     D F+         + W  +                    
Sbjct: 32  EINSFPQAWVDHYTVMGLAVQDPFMRWVYQNEGTVRWSELDLPDPAGVQQAYI-----EH 86

Query: 113 LPFAGIAFPVRLGFHKNG---YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169
               G    V           + IF           + +            L   K    
Sbjct: 87  NLRYGCLVSVLDALSGAPTRSFGIFARNDREFKTSELAKLQ--------QSLRGAKPGID 138

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LTE +   L+L  +G   +EIA +L +S   V A L +A   + A    QA +KA 
Sbjct: 139 DKPVLTEAQIEALRLLSNGKRFKEIAHELNISESAVKARLRAAMTNIGAKTATQATSKAA 198

Query: 230 RFGYI 234
           R G +
Sbjct: 199 RLGLL 203


>gi|224552993|gb|ACN54748.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 58/182 (31%), Gaps = 4/182 (2%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N + +  D+       + D  +      +    W+     +   +  ++          +
Sbjct: 28  NNNPEWFDVYLERKYQFIDPVIIRGLRCVEDYSWEDKVILSEGYNLTRIFNESIQ-YNIY 86

Query: 116 AGIAFPVRLGFHKNGYVIFTSE-FLMLANE-VIIEAHGACYQVITDFLELFKKRSSAARN 173
            G  FP+    +    +   S     +  E    +       +    L L+ +       
Sbjct: 87  QGRTFPLHDYLNNLVLLSVISHKDCDINIENYRPKFITFLANLHQKTLNLYSQHHQKKNV 146

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+    G T  E++  L ++  TV  ++G+   KL   N   A+   +   
Sbjct: 147 FLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGVELQ 206

Query: 233 YI 234
            +
Sbjct: 207 LL 208


>gi|27468447|ref|NP_765084.1| two-component response regulator-like protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867331|ref|YP_188953.1| LuxR family transcriptional regulator [Staphylococcus epidermidis
           RP62A]
 gi|242243070|ref|ZP_04797515.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811190|ref|ZP_04825663.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875769|ref|ZP_06284636.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366174|ref|ZP_06612860.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315994|gb|AAO05128.1|AE016749_74 two-component response regulator-like protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637989|gb|AAW54777.1| DNA-binding response regulator, LuxR family [Staphylococcus
           epidermidis RP62A]
 gi|242233528|gb|EES35840.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805318|gb|EES57975.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294794|gb|EFA87321.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319696|gb|EFE60056.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724867|gb|EGG61370.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU144]
 gi|329734273|gb|EGG70588.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU045]
 gi|329737276|gb|EGG73530.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 207

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIA  L +S  TV  ++     KL+  +R QA   A+   
Sbjct: 146 KLSKREKEVLKEMVKGKTNKEIARALFVSEKTVKTHVSHIFSKLEVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|253690507|ref|YP_003019697.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|34398218|gb|AAQ67211.1| transcriptional regulator [Enterobacteriaceae bacterium A2JM]
 gi|251757085|gb|ACT15161.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 242

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 13/196 (6%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           +  + +Y  +  ++       + D  +    + + P  W+                 L  
Sbjct: 44  MIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLV-INTRLQLAKIFDLSK 102

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE----AHGACYQVITDFLELF 164
                 G  F +         +     S +     + I E                + L 
Sbjct: 103 KYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDNVEKFIEEKKDTFQMLLIDAYEKIISLC 162

Query: 165 KKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           ++   + + L      ++RE   L  A  G T  E+A  LG+   TV  ++G+   KL  
Sbjct: 163 REMIESKKQLNNKEMFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 219 VNRIQAIAKAIRFGYI 234
           +N   AI   +    I
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|229099838|ref|ZP_04230762.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-29]
 gi|228683584|gb|EEL37538.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-29]
          Length = 215

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +I+  L   ++          LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IASALISQTLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|228932822|ref|ZP_04095692.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945136|ref|ZP_04107496.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229010843|ref|ZP_04168040.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048]
 gi|229016795|ref|ZP_04173725.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273]
 gi|229023000|ref|ZP_04179517.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272]
 gi|229058174|ref|ZP_04196563.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603]
 gi|229090494|ref|ZP_04221732.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42]
 gi|229096030|ref|ZP_04227005.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29]
 gi|229102142|ref|ZP_04232853.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28]
 gi|229114984|ref|ZP_04244396.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3]
 gi|229132346|ref|ZP_04261200.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196]
 gi|229160490|ref|ZP_04288485.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803]
 gi|229166381|ref|ZP_04294138.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621]
 gi|228617123|gb|EEK74191.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621]
 gi|228622900|gb|EEK79731.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803]
 gi|228651052|gb|EEL07033.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196]
 gi|228668496|gb|EEL23926.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3]
 gi|228681342|gb|EEL35508.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28]
 gi|228687415|gb|EEL41318.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29]
 gi|228692844|gb|EEL46565.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42]
 gi|228720139|gb|EEL71721.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603]
 gi|228738306|gb|EEL88785.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272]
 gi|228744531|gb|EEL94603.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273]
 gi|228750517|gb|EEM00346.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048]
 gi|228814580|gb|EEM60841.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826872|gb|EEM72636.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 196

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 126 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 185

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 186 VIYAFRHQL 194


>gi|326441393|ref|ZP_08216127.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 250

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +  +      ++R   A  LT+RE   L+L   G  + +IA++L +S +TV  
Sbjct: 161 MASKLLTEFKSMIQRTDERRLVPAPRLTDRELEVLKLVATGMNNRDIAKELFISENTVKN 220

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R++A+  A+R   +
Sbjct: 221 HVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|229069092|ref|ZP_04202384.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185]
 gi|228714037|gb|EEL65920.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185]
          Length = 151

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 81  KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 140

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 141 VIYAFRHQL 149


>gi|170689229|ref|ZP_02880425.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170666784|gb|EDT17551.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 210

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 200 VIYAFRHQL 208


>gi|146275775|ref|YP_001165935.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
 gi|145322466|gb|ABP64409.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
          Length = 255

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 85/252 (33%), Gaps = 21/252 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S  ++   + S  Q++      +     A          A D   ++  +    N    
Sbjct: 3   LSVESIDSVRISGPQDVRRAAEALHQIALAAGM---RAAPAHDIADKRTPVDADGNILAR 59

Query: 61  ----SGD---IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EG 110
                 D                         P    +    T   +    ++ L   E 
Sbjct: 60  DVFGWNDEKVWWRNSRIALDSPLTSACRFESEPFWVNANGFHTRQPNHYLTAIDLTNFET 119

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITD-------FLE 162
             +  A I  PV L F + G V F      L   + I   +G  + +             
Sbjct: 120 RAMTRAAIVVPVHLPFGQIGAVSFNPLDPDLTELDDIFLENGDAFGIYGRTFIASYVHAM 179

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +       L++RE  CL+ A  G T  EI+  +G S  TV  ++ +A++KL+AVNR 
Sbjct: 180 GSVQALPPGSRLSKREVECLRWAAIGKTDLEISMIMGRSRATVRFHIHNASMKLNAVNRS 239

Query: 223 QAIAKAIRFGYI 234
           Q + KA + GYI
Sbjct: 240 QTVFKAAQLGYI 251


>gi|269925421|ref|YP_003322044.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789081|gb|ACZ41222.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 224

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V++ F     +    +  LT+RE   L+LA  G +++ IA++L LS  TV  +L +
Sbjct: 138 IAKKVLSRFTSPSTQPEHPSPVLTDRELDVLRLAAKGESNKAIAQQLHLSPRTVQVHLSN 197

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              K    +R +A+  A++ G I
Sbjct: 198 IFNKFGVASRTEAVLHALKLGLI 220


>gi|298695117|gb|ADI98339.1| probable response regulator protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 207

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIAE L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|283471119|emb|CAQ50330.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 207

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIAE L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|269941319|emb|CBI49716.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 207

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIAE L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|258423125|ref|ZP_05686019.1| response regulator receiver [Staphylococcus aureus A9635]
 gi|257846689|gb|EEV70709.1| response regulator receiver [Staphylococcus aureus A9635]
          Length = 207

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIAE L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|253732505|ref|ZP_04866670.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253723786|gb|EES92515.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 207

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIAE L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|82751502|ref|YP_417243.1| two-component response regulator protein [Staphylococcus aureus
           RF122]
 gi|82657033|emb|CAI81470.1| probable two-component response regulator protein [Staphylococcus
           aureus RF122]
          Length = 207

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIAE L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|21283518|ref|NP_646606.1| hypothetical protein MW1789 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484090|ref|YP_041314.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486665|ref|YP_043886.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650637|ref|YP_186730.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161726|ref|YP_494481.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195671|ref|YP_500477.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221952|ref|YP_001332774.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510065|ref|YP_001575724.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142169|ref|ZP_03566662.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253735272|ref|ZP_04869437.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425960|ref|ZP_05602384.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428625|ref|ZP_05605023.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431262|ref|ZP_05607639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433942|ref|ZP_05610300.1| response regulator [Staphylococcus aureus subsp. aureus E1410]
 gi|257436858|ref|ZP_05612902.1| response regulator [Staphylococcus aureus subsp. aureus M876]
 gi|258452662|ref|ZP_05700661.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|262050140|ref|ZP_06022994.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30]
 gi|262052678|ref|ZP_06024870.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3]
 gi|282904423|ref|ZP_06312311.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906246|ref|ZP_06314101.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282909165|ref|ZP_06316983.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911471|ref|ZP_06319273.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914643|ref|ZP_06322429.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917116|ref|ZP_06324874.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282919609|ref|ZP_06327344.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924179|ref|ZP_06331854.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A9765]
 gi|282924989|ref|ZP_06332655.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|283770932|ref|ZP_06343824.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|283958601|ref|ZP_06376052.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|284024894|ref|ZP_06379292.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|293503715|ref|ZP_06667562.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510736|ref|ZP_06669441.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|293537278|ref|ZP_06671958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|294850276|ref|ZP_06791011.1| two-component system [Staphylococcus aureus A9754]
 gi|295428426|ref|ZP_06821055.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297207436|ref|ZP_06923873.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297590607|ref|ZP_06949245.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300911520|ref|ZP_07128965.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380550|ref|ZP_07363225.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|21204959|dbj|BAB95654.1| MW1789 [Staphylococcus aureus subsp. aureus MW2]
 gi|49242219|emb|CAG40926.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49245108|emb|CAG43574.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284823|gb|AAW36917.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127700|gb|ABD22214.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203229|gb|ABD31039.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374752|dbj|BAF68012.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368874|gb|ABX29845.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726679|gb|EES95408.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271654|gb|EEV03800.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275466|gb|EEV06953.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278210|gb|EEV08858.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282035|gb|EEV12172.1| response regulator [Staphylococcus aureus subsp. aureus E1410]
 gi|257284209|gb|EEV14332.1| response regulator [Staphylococcus aureus subsp. aureus M876]
 gi|257859637|gb|EEV82486.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|259159427|gb|EEW44479.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3]
 gi|259161765|gb|EEW46353.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30]
 gi|282313355|gb|EFB43751.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317419|gb|EFB47793.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282319603|gb|EFB49955.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282321824|gb|EFB52149.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325166|gb|EFB55476.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327429|gb|EFB57724.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331538|gb|EFB61052.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282592974|gb|EFB97976.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A9765]
 gi|282596041|gb|EFC01005.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|283461079|gb|EFC08169.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|283790750|gb|EFC29567.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920123|gb|EFD97191.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095381|gb|EFE25646.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466627|gb|EFF09148.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|294822892|gb|EFG39326.1| two-component system [Staphylococcus aureus A9754]
 gi|295127826|gb|EFG57463.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887899|gb|EFH26795.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297575493|gb|EFH94209.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300887152|gb|EFK82352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302333513|gb|ADL23706.1| two-component response regulator receiver protein [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|302751657|gb|ADL65834.1| two-component response regulator receiver protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340879|gb|EFM06804.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312437687|gb|ADQ76758.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315195759|gb|EFU26146.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315196803|gb|EFU27147.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141302|gb|EFW33147.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143570|gb|EFW35350.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323438857|gb|EGA96594.1| two-component response regulator protein [Staphylococcus aureus
           O11]
 gi|323441701|gb|EGA99346.1| two-component response regulator protein [Staphylococcus aureus
           O46]
 gi|329314524|gb|AEB88937.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329729501|gb|EGG65903.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329732948|gb|EGG69292.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 207

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIAE L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|15924838|ref|NP_372372.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927422|ref|NP_374955.1| hypothetical protein SA1666 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268320|ref|YP_001247263.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394382|ref|YP_001317057.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980164|ref|YP_001442423.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253315179|ref|ZP_04838392.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|255006636|ref|ZP_05145237.2| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257793793|ref|ZP_05642772.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|258413730|ref|ZP_05682003.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|258420763|ref|ZP_05683702.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|258438424|ref|ZP_05689708.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258443869|ref|ZP_05692208.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|258447324|ref|ZP_05695471.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258448193|ref|ZP_05696320.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|258453374|ref|ZP_05701357.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|269203485|ref|YP_003282754.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282895146|ref|ZP_06303365.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A8117]
 gi|282928586|ref|ZP_06336185.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A10102]
 gi|295406155|ref|ZP_06815963.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819]
 gi|296276020|ref|ZP_06858527.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297244922|ref|ZP_06928799.1| two-component system [Staphylococcus aureus A8796]
 gi|13701641|dbj|BAB42934.1| SA1666 [Staphylococcus aureus subsp. aureus N315]
 gi|14247620|dbj|BAB58010.1| two-component response regulator homolog [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147741389|gb|ABQ49687.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946834|gb|ABR52770.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722299|dbj|BAF78716.1| two-component response regulator homolog [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257787765|gb|EEV26105.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|257839517|gb|EEV63988.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|257843367|gb|EEV67777.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|257848468|gb|EEV72459.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257851275|gb|EEV75218.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|257853911|gb|EEV76867.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257858432|gb|EEV81308.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|257864466|gb|EEV87211.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262075775|gb|ACY11748.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282589795|gb|EFB94880.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A10102]
 gi|282762490|gb|EFC02631.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A8117]
 gi|285817528|gb|ADC38015.1| Two-component response regulator-like protein [Staphylococcus
           aureus 04-02981]
 gi|294969152|gb|EFG45173.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819]
 gi|297178002|gb|EFH37250.1| two-component system [Staphylococcus aureus A8796]
 gi|312830220|emb|CBX35062.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130508|gb|EFT86494.1| hypothetical protein CGSSa03_09695 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727450|gb|EGG63906.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 207

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIAE L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|260892920|ref|YP_003239017.1| two component transcriptional regulator, LuxR family [Ammonifex
           degensii KC4]
 gi|260865061|gb|ACX52167.1| two component transcriptional regulator, LuxR family [Ammonifex
           degensii KC4]
          Length = 213

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 18/165 (10%)

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----M 140
            P+    +          +    ++      A +A  V         ++           
Sbjct: 48  RPVDVVLLDISMPDMGGVEACREIKRLRPSVAVVALTVHDQEEYCLAMLEAGAAGYVLKE 107

Query: 141 LANEVIIEAH------------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            + + +IEA                 +++  F     KR      LT RE   L+L   G
Sbjct: 108 SSADQLIEAIVRAARGEEYLSPRLAGKMVKWFSRAESKRG--LCGLTPREKEILRLLASG 165

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ EIA +L LS  TV  +L S   K+   +R QA   A++ G+
Sbjct: 166 LSNREIARRLYLSEKTVKNHLTSIFQKIGVSDRTQAALWAVKHGF 210


>gi|120553107|ref|YP_957458.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
 gi|120322956|gb|ABM17271.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
          Length = 128

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 50/101 (49%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
             T  +  +    I+    A  +   +      + +     L++RE   L L  +G +++
Sbjct: 26  CITRGWSEVEASRILALRQARMEPDAETCARTPEVAGPDEPLSDREQGVLDLLAEGLSNK 85

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            I+++LG+SV TV ++L +   KL A NR+QA+A+A   G 
Sbjct: 86  AISKQLGISVATVKSHLSNIYGKLQAENRMQAVARARELGL 126


>gi|310643909|ref|YP_003948667.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309248859|gb|ADO58426.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 216

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 39/77 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + +     +  + A   LT+RE   L+L   G ++++IA++L + + TV  ++ +   KL
Sbjct: 138 MMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNLLAKL 197

Query: 217 DAVNRIQAIAKAIRFGY 233
              +R QA   A + G 
Sbjct: 198 GVEDRTQAAIYAYKNGL 214


>gi|52143908|ref|YP_082920.1| response regulator [Bacillus cereus E33L]
 gi|51977377|gb|AAU18927.1| response regulator [Bacillus cereus E33L]
          Length = 210

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 200 VIYAFRHQL 208


>gi|71279244|ref|YP_268811.1| LuxR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144984|gb|AAZ25457.1| transcriptional regulator, LuxR family [Colwellia psychrerythraea
           34H]
          Length = 269

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 24/242 (9%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-------------LICELHNYDLDSG 62
           +L   +  +   +    F L+        P  +                 +      D  
Sbjct: 17  DLLLLMDNVVESLGLDGF-LFAYAINGWLPSGEPGEIQRWLSKGIDKKSLKAWLAPFDRA 75

Query: 63  DIPNILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESS--GQLSVRLEGGLLPFAGI 118
              +  +    D          +P   +   I +E   E +   +  +           I
Sbjct: 76  SRKDSDVNRRFDPIRRFMVQQTIPHQFLLTDIIKENKNEYTLVEKRWINSLIKNNVVNLI 135

Query: 119 AFPVRLGFHKNGYVIFTSEFLM------LANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
           + PV+L   +   + F S+             +++ AH   Y  I +          +  
Sbjct: 136 SIPVQLPPSEYWSLSFFSKNTRYQLESSDKARLMLFAHQLVYHCIDNLQWREDGMKYSIV 195

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE  CL  +  G T+ EIA+ LGL   T+  Y+ +   +L+A ++ QA+ KAI FG
Sbjct: 196 KLTAREKDCLYWSAQGKTANEIADILGLKTETIRKYIKNVMKRLNARSKTQAVVKAIEFG 255

Query: 233 YI 234
            +
Sbjct: 256 LL 257


>gi|108805307|ref|YP_645244.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766550|gb|ABG05432.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 229

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
            I        +          KR       LT RE   L+L   G  + +IAE L +S  
Sbjct: 136 AIQLLRRLAREAHESANSPPAKRLPELCEPLTPREIEILRLLARGLKNRQIAEHLVISPG 195

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  ++     KL   +R QA  +AI  G +
Sbjct: 196 TVKVHVQHIIAKLGVSDRTQAAVRAIELGIL 226


>gi|295691166|ref|YP_003594859.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295433069|gb|ADG12241.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC
           21756]
          Length = 249

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 14/237 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP----RRQQLICELHNYDLDSGDIP 65
           + + +  L+ R+  +   +     A  + + +   P      + L      +   +    
Sbjct: 10  RLARVTALAERVAALGREMGLPYVA-ASADISSPEPMLGVDGKPLAETTFEWLDSALRYW 68

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
                     F+        P  +          +                  + I  P 
Sbjct: 69  RDRAFALRAPFILAARYTAEPFFYHQGRFASWRPMPRLETIEVADAAESFGVRSAIIAPA 128

Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSSAARNLTER 177
            L     G V++ +   +     +      E HGA  ++++ + +     +     LT+R
Sbjct: 129 YLTGGVIGAVVWAAANSVENVPALYAARADELHGAALRLVSAYRDGQDDDAPPV-RLTKR 187

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E  CL+ A  G T  +IA+ +G++  TV  ++ +A +KL    R QAI +A   GYI
Sbjct: 188 EIQCLKWAAAGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAIHRATGLGYI 244


>gi|238917970|ref|YP_002931487.1| two-component system, NarL family, response regulator DegU
           [Eubacterium eligens ATCC 27750]
 gi|238873330|gb|ACR73040.1| two-component system, NarL family, response regulator DegU
           [Eubacterium eligens ATCC 27750]
          Length = 214

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L++   G  ++EIA  L +S  TV  ++ +   K+   +R QA   AI+  
Sbjct: 150 ELTRRELEVLKMIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQAAVFAIKNN 209

Query: 233 YI 234
            I
Sbjct: 210 II 211


>gi|229043280|ref|ZP_04191002.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676]
 gi|229078723|ref|ZP_04211277.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2]
 gi|228704596|gb|EEL57028.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2]
 gi|228726141|gb|EEL77376.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676]
          Length = 199

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 129 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 189 VIYAFRHQL 197


>gi|37223253|gb|AAQ90229.1| LuxR [Aliivibrio fischeri]
          Length = 218

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 11/200 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWA 196

Query: 186 GDGYTSEEIAEKLGLSVHTV 205
            +G +S +I++ LG S   V
Sbjct: 197 CEGKSSWDISKILGCSEXXV 216


>gi|30019588|ref|NP_831219.1| two-component response regulator yvqC [Bacillus cereus ATCC 14579]
 gi|206968465|ref|ZP_03229421.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232967|ref|YP_002366221.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|296502111|ref|YP_003663811.1| two-component response regulator yvqC [Bacillus thuringiensis
           BMB171]
 gi|29895132|gb|AAP08420.1| Two-component response regulator yvqC [Bacillus cereus ATCC 14579]
 gi|206737385|gb|EDZ54532.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160924|gb|ACK60916.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|296323163|gb|ADH06091.1| two-component response regulator yvqC [Bacillus thuringiensis
           BMB171]
 gi|326939160|gb|AEA15056.1| two-component response regulator yvqC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 140 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 200 VIYAFRHQL 208


>gi|148658406|ref|YP_001278611.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570516|gb|ABQ92661.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 246

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDF--LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              QV+  F  + + ++  +    L+ RE   L+L   G+T++ IA+ L +S  TV  ++
Sbjct: 152 VAAQVLNAFRQMAVDEETQNVYSPLSPRELQVLELVAAGHTNKAIAQSLDISNQTVKNHI 211

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   KL   +R QA+  A+R G+I
Sbjct: 212 SSILRKLAVNDRTQAVVYAMRRGWI 236


>gi|251795142|ref|YP_003009873.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542768|gb|ACS99786.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 230

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +++    +  +   +A   +LTERE   L+    G +++EIA++L + V TV  ++ 
Sbjct: 146 VAAKMMNRLRKPKQPVQAALHDDLTEREMDVLKRVAQGMSNQEIADELFIGVKTVKFHIT 205

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KLD  +R QA   A + G 
Sbjct: 206 NIFNKLDVEDRTQAAIYAHKQGI 228


>gi|297617439|ref|YP_003702598.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145276|gb|ADI02033.1| transcriptional regulator, LuxR family [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 218

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L +  +  +++EIA  L LS  TV  +L +   KL   NR +A+A A + G 
Sbjct: 150 LSRREEEVLAMLANKLSTQEIAASLYLSESTVKTHLRNIFRKLGVRNRTEAVAAAYQLGL 209

Query: 234 I 234
           +
Sbjct: 210 V 210


>gi|229074728|ref|ZP_04207749.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18]
 gi|228708471|gb|EEL60623.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18]
          Length = 199

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 129 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 189 VIYAFRHQL 197


>gi|30261536|ref|NP_843913.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42780637|ref|NP_977884.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47526732|ref|YP_018081.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184365|ref|YP_027617.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481072|ref|YP_035656.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65318804|ref|ZP_00391763.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|118476998|ref|YP_894149.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163939354|ref|YP_001644238.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|165872654|ref|ZP_02217284.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634292|ref|ZP_02392613.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641615|ref|ZP_02399861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170706386|ref|ZP_02896847.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651401|ref|ZP_02934190.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568032|ref|ZP_03020942.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036887|ref|ZP_03104273.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196047716|ref|ZP_03114919.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206978391|ref|ZP_03239262.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959016|ref|YP_002337564.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095172|ref|YP_002529232.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225863403|ref|YP_002748781.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227815714|ref|YP_002815723.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229599953|ref|YP_002865949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682399|ref|ZP_05146260.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721216|ref|ZP_05183006.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733815|ref|ZP_05191529.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740493|ref|ZP_05198184.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753884|ref|ZP_05205919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758979|ref|ZP_05211006.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118514|ref|ZP_07056253.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053077|ref|YP_003791288.1| response regulator [Bacillus anthracis CI]
 gi|30255390|gb|AAP25399.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42736557|gb|AAS40492.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47501880|gb|AAT30556.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178292|gb|AAT53668.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49332628|gb|AAT63274.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118416223|gb|ABK84642.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163861551|gb|ABY42610.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
 gi|164711598|gb|EDR17145.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510408|gb|EDR85808.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530180|gb|EDR92906.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128920|gb|EDS97786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082679|gb|EDT67742.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560766|gb|EDV14741.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990509|gb|EDX54491.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021466|gb|EDX60170.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206743396|gb|EDZ54832.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065203|gb|ACJ79453.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239230|gb|ACM11940.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225787204|gb|ACO27421.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227006221|gb|ACP15964.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229264361|gb|ACQ45998.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724038|gb|EFI64741.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375246|gb|ADK04150.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324325555|gb|ADY20815.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 210

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 200 VIYAFRHQL 208


>gi|319650652|ref|ZP_08004792.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397833|gb|EFV78531.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 161 PLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAI 220

Query: 230 RFGYI 234
           + G++
Sbjct: 221 KNGWV 225


>gi|302035554|ref|YP_003795876.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300603618|emb|CBK39949.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 223

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 37/63 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LTERE + L+L  DG T++EIA  L LS  TV  ++ +   KL   +R QA   AIR 
Sbjct: 155 HDLTEREITVLRLVADGKTNKEIANNLDLSEKTVKNHVRNIFHKLQVYDRTQAAILAIRK 214

Query: 232 GYI 234
           G I
Sbjct: 215 GLI 217


>gi|226355486|ref|YP_002785226.1| response regulator NarL [Deinococcus deserti VCD115]
          Length = 218

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTERET 179
               GY++  +    L   V          H +  + + +        +    +L+ RE 
Sbjct: 99  AGAAGYLLKNASEDDLLGAVRAVAAGESALHPSVARKVLERFSTHTTPTPPEDDLSPREL 158

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L++A  G T++EIA  L +S  TV  +L +   KL   +R +A+   I+ G+I
Sbjct: 159 EVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 213


>gi|228951917|ref|ZP_04114015.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807840|gb|EEM54361.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 206

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 136 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 195

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 196 VIYAFRHQL 204


>gi|218902648|ref|YP_002450482.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218535833|gb|ACK88231.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 210

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 200 VIYAFRHQL 208


>gi|307151536|ref|YP_003886920.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306981764|gb|ADN13645.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 232

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + LE          +LTERE   LQL  DGY++  IA+KL ++V TV  ++ +   KL A
Sbjct: 156 ELLEPESNVRGETYSLTERELEVLQLIVDGYSNAAIADKLFITVGTVKTHVRNILNKLCA 215

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QA  +A+R G +
Sbjct: 216 DDRTQAAVRALRAGLV 231


>gi|293553248|ref|ZP_06673885.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1039]
 gi|291602658|gb|EFF32873.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1039]
          Length = 210

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA--ARNLTERETS 180
               GY++ TS    +A+ +     G      +V T  +E   +R+       LT RE  
Sbjct: 96  AGAAGYLLKTSTAHEIADAIRATQCGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRENE 155

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA   A + G +
Sbjct: 156 ILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|229020635|ref|ZP_04177369.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
 gi|229026848|ref|ZP_04183176.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228734456|gb|EEL85122.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228740659|gb|EEL90923.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
          Length = 215

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L   +K    +     LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 VANALLSQTLPEEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIAAVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA   A++ G +
Sbjct: 190 VSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|56421685|ref|YP_149003.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56381527|dbj|BAD77435.1| two-component response regulator (extracellular proteinase response
           regulator) [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   KL+  +R QA+  AI
Sbjct: 157 PLHLLTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLNVNDRTQAVVVAI 216

Query: 230 RFGYI 234
           + G++
Sbjct: 217 KNGWV 221


>gi|197105485|ref|YP_002130862.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196478905|gb|ACG78433.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 255

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 8/204 (3%)

Query: 39  NSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI 98
              +  P  + L      +                  F+        P  +Q  +  +  
Sbjct: 42  PRPMRGPDGRPLAETAFRWLDPDLRYWEDRGFALRAAFIRASRVCAEPFYFQGGRLRSWR 101

Query: 99  ESSGQLSVRLEGG--LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA-----NEVIIEAHG 151
            +    ++  EG       A I  P  L     G V + S    +           E H 
Sbjct: 102 TNPALDAIAAEGIETFGVGAAIVAPAYLPGGSIGAVTWASPDADVDTGSVFAARAAELHA 161

Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + +  + E        +   LT RE   L+ A  G T  EI   + +S  TV  ++ 
Sbjct: 162 LALRFVATYAEATGALVGTSPAHLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHIT 221

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +A+ KL    R QA+ +A   GY+
Sbjct: 222 NASRKLGVAGRAQAVHRAATLGYL 245


>gi|257869647|ref|ZP_05649300.1| regulatory protein [Enterococcus gallinarum EG2]
 gi|257803811|gb|EEV32633.1| regulatory protein [Enterococcus gallinarum EG2]
          Length = 209

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +      +LT RE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R
Sbjct: 136 RLTNRTPILHDDLTNREKEVLLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLEVEDR 195

Query: 222 IQAIAKAIRFGY 233
            QA   A + G 
Sbjct: 196 TQATIYAFKHGL 207


>gi|228938652|ref|ZP_04101257.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228957814|ref|ZP_04119555.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228971533|ref|ZP_04132157.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978144|ref|ZP_04138522.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407]
 gi|229126854|ref|ZP_04255866.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4]
 gi|229144139|ref|ZP_04272554.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24]
 gi|229149739|ref|ZP_04277969.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550]
 gi|229177946|ref|ZP_04305318.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W]
 gi|229189620|ref|ZP_04316635.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876]
 gi|228593884|gb|EEK51688.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876]
 gi|228605434|gb|EEK62883.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W]
 gi|228633770|gb|EEK90369.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550]
 gi|228639358|gb|EEK95773.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24]
 gi|228656794|gb|EEL12620.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4]
 gi|228781616|gb|EEM29816.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407]
 gi|228788192|gb|EEM36147.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228801896|gb|EEM48772.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228821028|gb|EEM67048.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 206

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE   L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 136 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 195

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 196 VIYAFRHQL 204


>gi|319650241|ref|ZP_08004387.1| YhcZ protein [Bacillus sp. 2_A_57_CT2]
 gi|317398072|gb|EFV78764.1| YhcZ protein [Bacillus sp. 2_A_57_CT2]
          Length = 215

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            ++T               LT+RE   L+    G +++EIA  L ++  TV  ++ +   
Sbjct: 133 HLLTHLTNKNSTERQPLEELTKRELEVLREIAKGKSNKEIASSLYITEKTVKTHVSNLLS 192

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL+  +R QA   A+R G 
Sbjct: 193 KLELADRTQAALYAVRHGI 211


>gi|296134303|ref|YP_003641550.1| two component transcriptional regulator, LuxR family [Thermincola
           sp. JR]
 gi|296032881|gb|ADG83649.1| two component transcriptional regulator, LuxR family [Thermincola
           potens JR]
          Length = 214

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   ++L  +G  + EIA +L +S  TV  ++ S   K+   +R QA   AI+  
Sbjct: 154 ELTAREREIIRLIAEGKNNREIAAELFISEKTVKNHISSIFRKIKVHDRTQAALYAIKTN 213

Query: 233 Y 233
            
Sbjct: 214 L 214


>gi|228984618|ref|ZP_04144793.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775145|gb|EEM23536.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 204

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 134 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 194 VIYAFRHQL 202


>gi|228920248|ref|ZP_04083596.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228926569|ref|ZP_04089640.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229121079|ref|ZP_04250319.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201]
 gi|229138230|ref|ZP_04266826.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26]
 gi|229183733|ref|ZP_04310953.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1]
 gi|229195738|ref|ZP_04322500.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293]
 gi|228587744|gb|EEK45800.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293]
 gi|228599776|gb|EEK57376.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1]
 gi|228645262|gb|EEL01498.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26]
 gi|228662408|gb|EEL18008.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201]
 gi|228833157|gb|EEM78723.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228839447|gb|EEM84740.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 204

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 134 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 194 VIYAFRHQL 202


>gi|311896318|dbj|BAJ28726.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 241

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                +    A  LT+RE   L+L   G  + EIA++L +S +TV  ++ +   KL   +
Sbjct: 165 RRSDDRELLPAPRLTDRELEVLKLVATGMNNREIAKELFISENTVKNHVRNILEKLQLHS 224

Query: 221 RIQAIAKAIRFGYI 234
           R++A+  A+R   +
Sbjct: 225 RMEAVVYAMREKIL 238


>gi|222151857|ref|YP_002561017.1| two-component response regulator VraR [Macrococcus caseolyticus
           JCSC5402]
 gi|222120986|dbj|BAH18321.1| two-component response regulator VraR [Macrococcus caseolyticus
           JCSC5402]
          Length = 207

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+        +++     LTERE   L L   GY+++EIA+   +++ TV  ++ +   
Sbjct: 127 EVMMKMRARMNQKAELHDMLTEREKEILLLIAKGYSNQEIADASHITIKTVKTHVSNILS 186

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 187 KLEVQDRTQAVIYAFQHDLI 206


>gi|329851246|ref|ZP_08266003.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840092|gb|EGF89664.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 247

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 72/217 (33%), Gaps = 2/217 (0%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              +  ++  I    F    ++           +  + +         +       D  L
Sbjct: 32  RAIIESLRKVIPFDYFFFSGVDLDNC--HTGANMVLMSDMPEAGIAEYHASGLVRADPLL 89

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                    + W  + EE       +  V L         + F               + 
Sbjct: 90  TLVTVERPDLSWFDVPEEVKARPEVRALVSLLDQHHIPPRVIFSQWNSAGDPYGTAGYAR 149

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               + + +        ++  D  E      +    LT  ET+CL+LA  G TSEEI  +
Sbjct: 150 TEPFSADEMAILSWFSRRIHKDLCEPVLNGFNQQIGLTAGETTCLELASRGMTSEEIGAQ 209

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + L+  TVN+Y+   T KL A NR QAIA A+R   I
Sbjct: 210 MDLTTETVNSYMKLITRKLGARNRSQAIADALRLNLI 246


>gi|270308516|ref|YP_003330574.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154408|gb|ACZ62246.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 225

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             D   L K  S+    LT RE   L L  +G T+++IA  L +S  T+  ++ +   KL
Sbjct: 146 FQDVSMLGKDASNFVTPLTNREKQILTLIANGNTNKQIANSLEISEQTIKNHVSAILRKL 205

Query: 217 DAVNRIQAIAKAIRFGYI 234
           +A +R  A+  AIR G I
Sbjct: 206 NANDRAHAVVVAIRCGLI 223


>gi|15614776|ref|NP_243079.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174832|dbj|BAB05932.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 217

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 40/79 (50%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            V+T       +     R+LT RE   L+    G +++EIA +L +S  TV  ++ +   
Sbjct: 133 HVLTRMNGDESEEEKRLRDLTNREKDVLRELAKGQSNKEIASELHISEKTVKTHVSNIFW 192

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KLD  +R QA   AI++G 
Sbjct: 193 KLDVHDRTQAALFAIKYGI 211


>gi|269925647|ref|YP_003322270.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789307|gb|ACZ41448.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 217

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 15/128 (11%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-------LFKKRSSAA--- 171
           + L   ++       E ++  +E   + +   Y    + LE       L +   +A    
Sbjct: 89  MSLKDSRSVLESLVGEGVLARSETDSDLYLRAYYPAAETLENRVKPQYLPEAPPAAGQTQ 148

Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                  L+ERE   L L   G+T+ EIA +L ++V TV +++ +   KL A NR++A++
Sbjct: 149 NQDLLEPLSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAKNRVEALS 208

Query: 227 KAIRFGYI 234
           +A   G I
Sbjct: 209 RARELGLI 216


>gi|229029217|ref|ZP_04185310.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271]
 gi|228732125|gb|EEL83014.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271]
          Length = 204

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK      +LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 134 KKEQPLHEDLTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 194 VIYAFRHQL 202


>gi|88798765|ref|ZP_01114348.1| two-component system regulatory protein [Reinekea sp. MED297]
 gi|88778528|gb|EAR09720.1| two-component system regulatory protein [Reinekea sp. MED297]
          Length = 224

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L+L   GY+++EI+  +  S  T+  ++ +   KL   +R +A+ KA
Sbjct: 159 PVQDPLTQREIEILRLMAGGYSNKEISRAIFKSEGTIKNHVSNILAKLGVRDRTRAVLKA 218

Query: 229 IRFGYI 234
           +  G I
Sbjct: 219 LELGVI 224


>gi|172056637|ref|YP_001813097.1| two component LuxR family transcriptional regulator
           [Exiguobacterium sibiricum 255-15]
 gi|171989158|gb|ACB60080.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sibiricum 255-15]
          Length = 209

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L K  S    +LTERE   LQL   G  ++EIA++L +S+ TV  ++ +   KLD V+R
Sbjct: 136 RLRKPTSHLHDDLTEREQEVLQLMARGMANQEIADELFISLKTVKTHVSNILSKLDVVDR 195

Query: 222 IQAIAKAIRFGYI 234
            QA+  A +   +
Sbjct: 196 TQAVVYAFKHNIV 208


>gi|256396281|ref|YP_003117845.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362507|gb|ACU76004.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 262

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 78/252 (30%), Gaps = 18/252 (7%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIK-----ARNFALYTINSALDFPRRQQLICELH 55
           MS + L+  + + + +L+  L    ++++       + A +           +  +    
Sbjct: 1   MSTSELSRSELAKILDLAVFLVETADQVEPMQSMRSHLAEHFSVEPGAIVLSRDDVWAQT 60

Query: 56  NYDLDSGDIPNILIETYGDDFLFH-FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114
                      +         + H   +    I+       + +  S +    +   +  
Sbjct: 61  GCSEAECRHDGVWPLLDRHPLVTHYARTRDERILAPRRTVRSDVAWSPRWDDLVREAIGC 120

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITD-----FLELFKKR 167
              ++ PV      +   +  +     +    ++          +            +  
Sbjct: 121 ETYLSMPVPAPAGTSQLYLLGTSHRNASWHHSLLATLAPLASAAVKRSISSCLAAARQDS 180

Query: 168 SSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
            S         LT RE   L+L     T++ IA +L  S  TV+ +L +   KL   +R+
Sbjct: 181 GSPILEADTTILTRRERHVLELLAQSLTADAIAHRLKCSKRTVHKHLQNIYRKLGTADRL 240

Query: 223 QAIAKAIRFGYI 234
           Q +  A + G +
Sbjct: 241 QTVLAAQKLGLV 252


>gi|295401191|ref|ZP_06811164.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109465|ref|YP_003987781.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294976784|gb|EFG52389.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214566|gb|ADP73170.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 226

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ +   KL+  +R QA+  AI
Sbjct: 159 PLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVIVAI 218

Query: 230 RFGYI 234
           + G++
Sbjct: 219 KNGWV 223


>gi|138896712|ref|YP_001127165.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249414|ref|ZP_03148112.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134268225|gb|ABO68420.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211171|gb|EDY05932.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 225

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   KL+  +R QA+  AI
Sbjct: 158 PLHLLTRRECEVLQLLADGKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVVVAI 217

Query: 230 RFGYI 234
           + G++
Sbjct: 218 KNGWV 222


>gi|116511719|ref|YP_808935.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125624447|ref|YP_001032930.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|12483697|gb|AAG53723.1|AF172650_3 RrD [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107373|gb|ABJ72513.1| DNA-binding response regulator (Rec-wHTH domains) [Lactococcus
           lactis subsp. cremoris SK11]
 gi|124493255|emb|CAL98222.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071234|gb|ADJ60634.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 209

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLT 175
            FP  L     GY++ TS+   +A  +   A+G       V     +   ++     +L+
Sbjct: 92  VFPA-LAAGAKGYILKTSQAAEIAMAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLS 150

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L++   G +++EIA++L +S+ TV  ++ +   KL+  +R QA   AI+   +
Sbjct: 151 KRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209


>gi|315271266|gb|ACO45472.2| putative response regulator, NarL [Deinococcus deserti VCD115]
          Length = 231

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTERET 179
               GY++  +    L   V          H +  + + +        +    +L+ RE 
Sbjct: 112 AGAAGYLLKNASEDDLLGAVRAVAAGESALHPSVARKVLERFSTHTTPTPPEDDLSPREL 171

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L++A  G T++EIA  L +S  TV  +L +   KL   +R +A+   I+ G+I
Sbjct: 172 EVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 226


>gi|229118901|ref|ZP_04248248.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-3]
 gi|228664557|gb|EEL20052.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-3]
          Length = 215

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +I+  L   ++          LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IASTLISQTLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|229172177|ref|ZP_04299742.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3]
 gi|228611520|gb|EEK68777.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3]
          Length = 207

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 137 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 196

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 197 VIYAFRHQL 205


>gi|320162421|ref|YP_004175646.1| putative LysR family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996275|dbj|BAJ65046.1| putative LysR family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
          Length = 455

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ERE   L+L   G +++EIA+ L +S +TV  +L +   K+  V+R +A   A
Sbjct: 4   PNNEPLSEREIEILRLVATGASNKEIAQALSISPNTVKVHLRNIFAKIGVVSRTEATLYA 63

Query: 229 IRFGY 233
           IR G 
Sbjct: 64  IRNGI 68


>gi|323704464|ref|ZP_08116042.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535926|gb|EGB25699.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 140 MLANEVIIEAHGACY----QVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEE 193
              ++ +I+A          +    +   +  +++   ++LT+RE   L L  +GY+++E
Sbjct: 105 DADSDELIKAIRIISNGGVYIHPSLIREIESLEKNECKKDLTDREFEILNLIAEGYSNKE 164

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           IA+KL LS  TV  ++ +   KLD  +R QA   
Sbjct: 165 IADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIY 198


>gi|257893584|ref|ZP_05673237.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260560505|ref|ZP_05832679.1| regulatory protein [Enterococcus faecium C68]
 gi|261209022|ref|ZP_05923427.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289565166|ref|ZP_06445618.1| response regulator LiaR [Enterococcus faecium D344SRF]
 gi|293563601|ref|ZP_06678047.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1162]
 gi|293569319|ref|ZP_06680617.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1071]
 gi|294615290|ref|ZP_06695166.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1636]
 gi|294619055|ref|ZP_06698550.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1679]
 gi|314939788|ref|ZP_07847008.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314942017|ref|ZP_07848877.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314950011|ref|ZP_07853304.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314953533|ref|ZP_07856445.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992148|ref|ZP_07857595.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314995132|ref|ZP_07860248.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257829963|gb|EEV56570.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260073507|gb|EEW61835.1| regulatory protein [Enterococcus faecium C68]
 gi|260077061|gb|EEW64783.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289162987|gb|EFD10835.1| response regulator LiaR [Enterococcus faecium D344SRF]
 gi|291588025|gb|EFF19875.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1071]
 gi|291591848|gb|EFF23481.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1636]
 gi|291594716|gb|EFF26098.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1679]
 gi|291604451|gb|EFF33939.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1162]
 gi|313590623|gb|EFR69468.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313593289|gb|EFR72134.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594456|gb|EFR73301.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313599194|gb|EFR78039.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640928|gb|EFS05508.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313643658|gb|EFS08238.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSA--ARNLTERE 178
               GY++ TS    +A    I A     +V+        +E   +R+       LT RE
Sbjct: 96  AGAAGYLLKTSTAHEIA--DAIRATQRGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA   A + G +
Sbjct: 154 NEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 211

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKITPALLGRSAVKKEKENPFSMLTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNILAKLEVDDRTQAALYAVKHG 209


>gi|190349640|gb|ACE75883.1| quorum sensing response regulator [Serratia plymuthica]
          Length = 248

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 52/189 (27%), Gaps = 15/189 (7%)

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
           +           + D  L   +  + P  W                  +        G  
Sbjct: 52  EWFKFYTENNYQFIDPVLITASRRITPFSWDENLM-IDPGLKLPRIFDMAKNYNIVNGYT 110

Query: 120 FPVRLGFHKNGYVIFTSEF--LMLANEVIIE----AHGACYQVITDFLELFKKRSSA--- 170
           F      H    +    +          I                   EL+K+ +S    
Sbjct: 111 FVPHDHNHNLVVLSIMIDKHCDDNIEGEIAANQDKLQMLLITTHDKTTELYKEINSPNYF 170

Query: 171 -----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                    ++RE   +  A  G + +EIA  LG+ + T+  ++G+A  KL   N   AI
Sbjct: 171 DKMNNKEIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAI 230

Query: 226 AKAIRFGYI 234
              +    I
Sbjct: 231 RLGVELQLI 239


>gi|24306039|gb|AAN52499.1| SpnR [Serratia marcescens]
          Length = 247

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 60/235 (25%), Gaps = 21/235 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           + L   +    +      +A   ++      +    +  +  Y  +  ++         D
Sbjct: 13  ETLREYIDRKLSSFGRLEYAYTVVSK-----KNPSDVLIVSTYSDEWVELYRTNNFQLTD 67

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +        P  W             +    L        G  F +    +    +  
Sbjct: 68  PVILTAFRRTSPFAWDENITLMSDLKFTK-IFSLAKHYNIVNGFTFVLHDHMNNLTLLSV 126

Query: 135 T---SEFLMLANEVIIEAHGACYQVIT------------DFLELFKKRSSAARNLTERET 179
               +E   L   +  E       +I                             T RE 
Sbjct: 127 IIANNEQGELEARLTFERGAIQILLIDINEQMYCFAGTSSSGRQRHHMDRVKPIFTPREN 186

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  +  G T  +IA   G+S+  V  ++G+   KL   N  QAI   +    I
Sbjct: 187 EVLYWSSMGKTYGDIAAIAGISISMVKFHMGNIVSKLGVSNARQAIRLGVELELI 241


>gi|8217387|emb|CAB92554.1| SmaR protein [Serratia sp. ATCC 39006]
          Length = 247

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 15/190 (7%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
           ++  D        + D  L   +    P +W                  +        G 
Sbjct: 51  MEWFDFYTKNNLQFIDPVLITASCCFTPFLWDENIM-ISSGLKMPKIFNMAKNYDVINGY 109

Query: 119 AFPVRLGFHKNGYVIFTSEFL-MLANEVII-----EAHGACYQVITDFLELFKKRSSAA- 171
            F +    H    +    +       E II     +            + L+++ +    
Sbjct: 110 TFVLHDHNHNLVVLSIIMDKSCDDDIEKIIVDKKNDLQMLLLTTHEKLITLYQEINDTHQ 169

Query: 172 -------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                    L++RE   L  A  G + +EIA  LG+ + TV  ++G+A  KL   N   A
Sbjct: 170 FNKKNQKEILSKRENEILYWASMGKSYQEIALILGIKLTTVKYHVGNAVKKLGVTNAKHA 229

Query: 225 IAKAIRFGYI 234
           I   +    I
Sbjct: 230 IRLGVELKLI 239


>gi|269925915|ref|YP_003322538.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789575|gb|ACZ41716.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 226

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +V+  F +L   +   +    LT RE   L     G +++EIA ++ +S  TV  +
Sbjct: 135 FVASRVLKQFRDLAALEDEENLFTPLTSREVEILDCIARGMSNKEIARQMSISDQTVKNH 194

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL   +R QA+  A++ G+I
Sbjct: 195 ITSILRKLAVNDRTQAVIYALKRGWI 220


>gi|209528219|ref|ZP_03276686.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209491341|gb|EDZ91729.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 236

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIAEKL ++V TV  ++ S   KL A +R QA  +A+R G
Sbjct: 174 PLTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233

Query: 233 YI 234
           +I
Sbjct: 234 WI 235


>gi|73749035|ref|YP_308274.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669801|ref|YP_001214619.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|73660751|emb|CAI83358.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270749|gb|ABQ17741.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 225

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             D   L K  SS    LT RE   L L  +G T+++IA  L +S  T+  ++ +   KL
Sbjct: 146 FQDVSMLGKDASSFVAPLTNREKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKL 205

Query: 217 DAVNRIQAIAKAIRFGYI 234
           +A +R  A+  AIR G I
Sbjct: 206 NANDRAHAVVVAIRCGLI 223


>gi|145860182|dbj|BAF57040.1| DNA-binding response regulator [Streptococcus bovis]
          Length = 214

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               GY++ TS    +  A + +     A    +   ++   K+     +LT RE   L+
Sbjct: 99  AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDKQPELHEDLTARERDILR 158

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +   +
Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209


>gi|228914112|ref|ZP_04077732.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229155107|ref|ZP_04283220.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342]
 gi|228628392|gb|EEK85106.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342]
 gi|228845565|gb|EEM90596.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 204

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           KK       LTERE+  L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA
Sbjct: 134 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193

Query: 225 IAKAIRFGY 233
           +  A R   
Sbjct: 194 VIYAFRHQL 202


>gi|15806010|ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458715|gb|AAF10563.1|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 239

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTERET 179
               GY++  +    L   V          H +  + + +   +    +    +L+ RE 
Sbjct: 120 AGAAGYLLKNASEDDLLGAVRAVAAGESALHPSIARKVLERFSVASTPTPPEDDLSPREL 179

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L++A  G T++EIA  L +S  TV  +L +   KL   +R +A+   I+ G+I
Sbjct: 180 EVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 234


>gi|226314987|ref|YP_002774883.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097937|dbj|BAH46379.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT RE   LQL  +G ++  I E L +S  TV  ++ S   KL+  +R QA+  +I+ 
Sbjct: 171 ESLTRREREVLQLMAEGKSNRAIGEFLFISEKTVKNHVSSILQKLNVQDRTQAVVISIKN 230

Query: 232 GYI 234
           G++
Sbjct: 231 GWV 233


>gi|171778156|ref|ZP_02919413.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283138|gb|EDT48562.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 214

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               GY++ TS    +  A + +     A    +   ++   ++     +LT RE   L+
Sbjct: 99  AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDQKPELHEDLTARERDILR 158

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +   +
Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209


>gi|111220761|ref|YP_711555.1| putative protein-glutamate methylesterase [Frankia alni ACN14a]
 gi|111148293|emb|CAJ59965.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a]
          Length = 237

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT+RE   L+L   G  + +IA++L +S +TV  ++ +   KL   +R++
Sbjct: 164 DDRPQLPTPRLTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRME 223

Query: 224 AIAKAIRFGYI 234
           A+  A+R   +
Sbjct: 224 AVVYAVREKLL 234


>gi|257885240|ref|ZP_05664893.1| regulatory protein [Enterococcus faecium 1,231,501]
 gi|257821092|gb|EEV48226.1| regulatory protein [Enterococcus faecium 1,231,501]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSA--ARNLTERE 178
               GY++ TS    +A    I A     +V+        +E   +R+       LT RE
Sbjct: 96  AGAAGYLLKTSTAHEIA--DAIRATQRGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA   A + G +
Sbjct: 154 NEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|73662218|ref|YP_300999.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|88952438|sp|Q49YS9|VRAR_STAS1 RecName: Full=Response regulator protein vraR
 gi|72494733|dbj|BAE18054.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 209

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +V+       K+R+     LTERE   L L   GY+++EIA    +++ TV  ++ +  
Sbjct: 128 AEVLVKMRNRMKQRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNIL 187

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL+  +R QA+  A +   I
Sbjct: 188 SKLEVQDRTQAVIYAFQHNLI 208


>gi|289642814|ref|ZP_06474951.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507383|gb|EFD28345.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 233

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 157 ITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                     R S   A +LT RE   L+L  +G  + EIA KL +S +TV  ++ +   
Sbjct: 151 FAALARGSDDRPSRVPAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILD 210

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   +R++A+  A+R G 
Sbjct: 211 KLQLHSRMEAVMYAVRQGL 229


>gi|294501833|ref|YP_003565533.1| two-component response regulator DegU [Bacillus megaterium QM
           B1551]
 gi|295707182|ref|YP_003600257.1| two-component response regulator DegU [Bacillus megaterium DSM 319]
 gi|126540400|emb|CAL44587.1| DegU protein [Bacillus megaterium DSM 319]
 gi|294351770|gb|ADE72099.1| two-component response regulator DegU [Bacillus megaterium QM
           B1551]
 gi|294804841|gb|ADF41907.1| two-component response regulator DegU [Bacillus megaterium DSM 319]
          Length = 227

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 160 PLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAI 219

Query: 230 RFGYI 234
           + G++
Sbjct: 220 KNGWV 224


>gi|159900171|ref|YP_001546418.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893210|gb|ABX06290.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 221

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H      +       +     A  LTERE   L+L   G+++ EIA+ L +S  TV  +
Sbjct: 127 LHPEVAAKLMQEFSAPRNNDPDAEALTEREMDVLRLIARGHSNREIADSLIISEKTVKTH 186

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL   +R QA   A+R   +
Sbjct: 187 VSNILSKLHLADRTQAAIYALRQRLV 212


>gi|257899016|ref|ZP_05678669.1| regulatory protein [Enterococcus faecium Com15]
 gi|257836928|gb|EEV62002.1| regulatory protein [Enterococcus faecium Com15]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSA--ARNLTERE 178
               GY++ TS    +A    I A     +V+        +E   +R+       LT RE
Sbjct: 96  AGAAGYLLKTSTAHEIA--DAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHEELTNRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA   A + G +
Sbjct: 154 NEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|169827260|ref|YP_001697418.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168991748|gb|ACA39288.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 204

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT+RE   L L   G  ++EIA++L +++ TV  ++ +   KL+  +R QA+  
Sbjct: 137 TPLYEQLTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVY 196

Query: 228 AIRFGY 233
           A + G 
Sbjct: 197 AFQNGL 202


>gi|315649433|ref|ZP_07902521.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315275209|gb|EFU38579.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 214

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERET 179
                Y++ TS    +A+ +   A G           + +     +  + A  +LT+RE 
Sbjct: 99  AGAFSYLLKTSRASEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREM 158

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             L+L   G ++++IA+ L + + TV  ++ +   KL   +R QA   A + G 
Sbjct: 159 EVLRLVAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212


>gi|69248021|ref|ZP_00604584.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|227550521|ref|ZP_03980570.1| LuxR family response regulator [Enterococcus faecium TX1330]
 gi|257880197|ref|ZP_05659850.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257882998|ref|ZP_05662651.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|257888548|ref|ZP_05668201.1| regulatory protein [Enterococcus faecium 1,141,733]
 gi|257891419|ref|ZP_05671072.1| regulatory protein [Enterococcus faecium 1,231,410]
 gi|257897077|ref|ZP_05676730.1| regulatory protein [Enterococcus faecium Com12]
 gi|258614385|ref|ZP_05712155.1| LuxR family DNA-binding response regulator [Enterococcus faecium
           DO]
 gi|293377300|ref|ZP_06623504.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293572485|ref|ZP_06683464.1| transcriptional regulatory protein DegU [Enterococcus faecium E980]
 gi|294622136|ref|ZP_06701212.1| transcriptional regulatory protein DegU [Enterococcus faecium
           U0317]
 gi|68194589|gb|EAN09079.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|227180422|gb|EEI61394.1| LuxR family response regulator [Enterococcus faecium TX1330]
 gi|257814425|gb|EEV43183.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257818656|gb|EEV45984.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|257824602|gb|EEV51534.1| regulatory protein [Enterococcus faecium 1,141,733]
 gi|257827779|gb|EEV54405.1| regulatory protein [Enterococcus faecium 1,231,410]
 gi|257833642|gb|EEV60063.1| regulatory protein [Enterococcus faecium Com12]
 gi|291598337|gb|EFF29424.1| transcriptional regulatory protein DegU [Enterococcus faecium
           U0317]
 gi|291607402|gb|EFF36745.1| transcriptional regulatory protein DegU [Enterococcus faecium E980]
 gi|292643992|gb|EFF62098.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSA--ARNLTERE 178
               GY++ TS    +A    I A     +V+        +E   +R+       LT RE
Sbjct: 96  AGAAGYLLKTSTAHEIA--DAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHEELTNRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L  +G +++EIA++L +++ TV  ++ +   KL+  +R QA   A + G +
Sbjct: 154 NEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|269837643|ref|YP_003319871.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786906|gb|ACZ39049.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 234

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             +  ++ +  S     LT RE   L     G +++EIA  L +S  TV  ++ S   KL
Sbjct: 145 FRELAQIDEVSSGVFSPLTPREVEILDCVARGNSNKEIARLLNISDQTVKNHITSILRKL 204

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+  A+R G+I
Sbjct: 205 AVNDRTQAVIYALRHGWI 222


>gi|119715674|ref|YP_922639.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536335|gb|ABL80952.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 213

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +   ++       LTERE   L+L   G  + EIA++L +S +TV  ++ +   KL   +
Sbjct: 137 MSRPERDHVPGLRLTERELEVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHS 196

Query: 221 RIQAIAKAIRFGYI 234
           R++A+  A++   +
Sbjct: 197 RMEAVMYAVKEKLL 210


>gi|319892883|ref|YP_004149758.1| Two-component response regulator-like protein [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162579|gb|ADV06122.1| Two-component response regulator-like protein [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 208

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H    QV+   +     +      L++RET  L+    G T++EIAE L +S  T+  ++
Sbjct: 128 HKDAQQVMDTVIT----KPHMLNKLSKRETEVLKEMAKGKTNKEIAETLFVSEKTIKTHV 183

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL+  +R QA   A+    I
Sbjct: 184 SHIFSKLEVTDRTQAAIYAMENHLI 208


>gi|283783120|ref|YP_003373874.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|283441895|gb|ADB14361.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
          Length = 261

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +SA   LT+RE   L     G +++EIA+KL +S+ TV  ++     K+ A +R+QA+  
Sbjct: 193 NSAITELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVF 252

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 253 AYENGLV 259


>gi|312199837|ref|YP_004019898.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231173|gb|ADP84028.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 237

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT+RE   L+L   G  + +IA++L +S +TV  ++ +   KL   +R++
Sbjct: 164 DDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRME 223

Query: 224 AIAKAIRFGYI 234
           A+  A+R   +
Sbjct: 224 AVVYAVREKLL 234


>gi|261409282|ref|YP_003245523.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329924974|ref|ZP_08279920.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|261285745|gb|ACX67716.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328940263|gb|EGG36593.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 214

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERET 179
                Y++ TS    +A+ +   A G           + +     +  + A  +LT+RE 
Sbjct: 99  AGAFSYLLKTSRASEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREM 158

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             L+L   G ++++IA+ L + + TV  ++ +   KL   +R QA   A + G 
Sbjct: 159 EVLRLLAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212


>gi|218516149|ref|ZP_03512989.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 122

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 55/119 (46%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           AG+A P      +     F  E   L    + E        +  +  + +   SA   L+
Sbjct: 3   AGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILHALDAYNIVRRNEESAHNALS 62

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   ++    G TS EI + L LS HTVNAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 63  ARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 121


>gi|332707622|ref|ZP_08427652.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332353630|gb|EGJ33140.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 216

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G   +V     +           LT RE   L+L   G ++ EIA+ L +S  TV  ++ 
Sbjct: 129 GIGRKVAAQMRDPTPSPPPGWDELTPREQEILRLIATGASNREIAQTLYISEKTVKNHVT 188

Query: 211 SATVKLDAVNRIQAIAKA 228
               +L+  +R QA   A
Sbjct: 189 HILSRLNVRDRTQAAILA 206


>gi|328555254|gb|AEB25746.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
          Length = 229

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAI 221

Query: 230 RFGY 233
           + G+
Sbjct: 222 KNGW 225


>gi|160882054|ref|YP_001561022.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430720|gb|ABX44283.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 213

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +    SS    LT RE   L+L  +G  ++EIA +L +S  TV  ++ +   K+   +R
Sbjct: 138 RMQSPSSSNTEILTRREIDVLKLLAEGLFNKEIAYRLSISEKTVKNHVSNIFKKISVSDR 197

Query: 222 IQAIAKAIRFGYI 234
            QA   AI+  ++
Sbjct: 198 TQAAVYAIKNNFV 210


>gi|323699571|ref|ZP_08111483.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. ND132]
 gi|323459503|gb|EGB15368.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans ND132]
          Length = 226

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              +      LT RE   +++  +G T++ +AE+L +S  TV  +  +   KL   + ++
Sbjct: 149 ADGQDDPYATLTPREQEVMRMLAEGLTAKAVAEQLFISPKTVENHRTNLMKKLGLKSSVE 208

Query: 224 AIAKAIRFGYI 234
            +  A R G I
Sbjct: 209 LVRYAARLGLI 219


>gi|317130322|ref|YP_004096604.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475270|gb|ADU31873.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 232

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           F E+  +R      LT RE   LQL  DG ++  I E L +S  TV  ++ +   K+   
Sbjct: 157 FREVEFRR--PLHLLTRRECEVLQLMTDGKSNRAIGEALYISEKTVKNHVSNILQKMGMN 214

Query: 220 NRIQAIAKAIRFGYI 234
           +R QA+  AI+ G++
Sbjct: 215 DRTQAVVDAIKNGWV 229


>gi|27762474|gb|AAO23018.1| putative regulatory protein MdlX [Pseudomonas putida]
          Length = 233

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 12/211 (5%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
           +  L  +   + A   A +  + +      + +     N +    +          D   
Sbjct: 31  AAILQAVAAFLDAEFVASFVWDKSEG----RSIDPLAFNMESQFIEAYQKHFYQ-VDLVT 85

Query: 78  FHFNSGLLPIIWQSIQEETVIES--SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
                   P     +       +    +             G+      G    G +   
Sbjct: 86  PIMREVRAP---ARVDCHVPRSAMLKSEFYNDFLQPADMEHGLNVFFFDGDRDIGDLRVW 142

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                       E   +  Q      + F    + ++ L+ RE    +L   G + +E+A
Sbjct: 143 RSKGSKPFSEREERLLSTLQPYVQ--KAFSPAPTLSQRLSLREAEVAELVAQGASDKEVA 200

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +L ++  TV  +L +A  KL+  NR Q   
Sbjct: 201 RRLDIAFSTVRTHLKNAMAKLECQNRTQLAR 231


>gi|304317230|ref|YP_003852375.1| LuxR family transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778732|gb|ADL69291.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 210

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 140 MLANEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
              ++ +I+A              ++++   L        + LT+RE   L L  +GY++
Sbjct: 105 DADSDELIKAIRTISNGGVYIHPSLVSEIENLDTDE--CKKELTDREMQILSLIAEGYSN 162

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +EIA+KL LS  TV  ++ +   KLD  +R QA   
Sbjct: 163 KEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIY 198


>gi|229105997|ref|ZP_04236618.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-28]
 gi|228677392|gb|EEL31648.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-28]
          Length = 215

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +I+  L   ++          LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IASTLISQTLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|222153503|ref|YP_002562680.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222114316|emb|CAR42990.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 213

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +PV       GY++ TS    +  A + + +   A    +   ++   ++ +    LT R
Sbjct: 93  YPVID-AGAKGYMLKTSSAAEILNAIQKVAKGQLAIETEVDKKIKAHDRKPNLHDELTAR 151

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A R   +
Sbjct: 152 EYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208


>gi|298253881|ref|ZP_06977468.1| response regulator of two-component system [Gardnerella vaginalis
           5-1]
 gi|297532024|gb|EFH70999.1| response regulator of two-component system [Gardnerella vaginalis
           5-1]
          Length = 257

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +SA   LT+RE   L     G +++EIA+KL +S+ TV  ++     K+ A +R+QA+  
Sbjct: 189 NSAITELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVF 248

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 249 AYENGLV 255


>gi|291486102|dbj|BAI87177.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 229

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAI 221

Query: 230 RFGYI 234
           + G++
Sbjct: 222 KNGWV 226


>gi|86739478|ref|YP_479878.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86566340|gb|ABD10149.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 237

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT+RE   L+L   G  + +IA++L +S +TV  ++ +   KL   +R++
Sbjct: 164 DDRPQLPTPRLTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRME 223

Query: 224 AIAKAIRFGYI 234
           A+  A+R   +
Sbjct: 224 AVVYAVREKLL 234


>gi|311070055|ref|YP_003974978.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870572|gb|ADP34047.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 229

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVENHVSNILQKMNVNDRTQAVVVAI 221

Query: 230 RFGYI 234
           + G++
Sbjct: 222 KNGWV 226


>gi|51893278|ref|YP_075969.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856967|dbj|BAD41125.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 197

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L  +G T+ EIA +L +S  TV  +  +   KL   +R + +  AIR G
Sbjct: 134 PLTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTELVRYAIRQG 193

Query: 233 YI 234
            +
Sbjct: 194 LV 195


>gi|315641236|ref|ZP_07896313.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315483003|gb|EFU73522.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 209

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   LQL  +G +++EIA++L +++ TV  ++ +   KL+  +R QA   A +
Sbjct: 145 HDELTNREKEVLQLISNGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQAAIYAFK 204

Query: 231 FGYI 234
            GYI
Sbjct: 205 HGYI 208


>gi|117928967|ref|YP_873518.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649430|gb|ABK53532.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 303

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               +    A  LTERE   L+L   G  + +IA++L +S +TV  ++ +   KL   +R
Sbjct: 228 RGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQLFISENTVKNHVRNILEKLQLHSR 287

Query: 222 IQAIAKAIRFGYI 234
           ++A+  A+R   +
Sbjct: 288 MEAVVYAVREKLL 300


>gi|317122051|ref|YP_004102054.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592031|gb|ADU51327.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 218

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              +V+       ++ +         LT RE   LQL  +G ++ EI ++L +S  TV  
Sbjct: 130 LSARVLNLGTRRRERWTPLGGGIPEPLTRREFEVLQLVAEGVSNREIGQRLFISEKTVKN 189

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ S   KL   +R QA+  AIR G++
Sbjct: 190 HITSIFRKLGVADRTQAVIHAIREGWV 216


>gi|188585286|ref|YP_001916831.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349973|gb|ACB84243.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 215

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   LQL   GYT++EIAEKL +S+ TV  ++     KL    R + +  A+R   
Sbjct: 152 LSDREKEVLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRYAMRNNI 211

Query: 234 I 234
           I
Sbjct: 212 I 212


>gi|315654640|ref|ZP_07907546.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
 gi|315491104|gb|EFU80723.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 254

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT+RET  L L   G T++EIA +L +S+ TV  ++G+   K+ A +R+QA+  A   
Sbjct: 190 DSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFAYEN 249

Query: 232 GYI 234
           G +
Sbjct: 250 GLV 252


>gi|228994130|ref|ZP_04154030.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228765582|gb|EEM14236.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 215

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++  L   +K+ S+      LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IASALLSQTLPQAEKQESSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILGKLNLSDRTQAALYAVKNGVV 215


>gi|256389407|ref|YP_003110971.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256355633|gb|ACU69130.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 222

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178
               GY++  +    L   V   A G          +++T       + +     LTERE
Sbjct: 106 AGATGYLLKDAPREDLIRAVRAAAAGQPVLAPTVAQRLMTRVQTPLAEPAPPGDALTERE 165

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+L   G T+ E A KL +S  TV  +L  A  K    +R  A+A+A + G +
Sbjct: 166 LEVLRLVASGTTNRETARKLFISEATVKTHLLHAYAKFGVRDRAAAVAEAYKRGLL 221


>gi|299538340|ref|ZP_07051623.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298725927|gb|EFI66519.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 210

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                     +     LTERE   L L   G  ++EIA++L +++ TV  ++ +   KL+
Sbjct: 133 MMHRMRHGNSTPLYEQLTEREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLE 192

Query: 218 AVNRIQAIAKAIRFGY 233
             +R QA+  A + G 
Sbjct: 193 VQDRTQAVVYAFQNGL 208


>gi|269128235|ref|YP_003301605.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313193|gb|ACY99567.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 253

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 152 ACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
              ++IT+F  L K+         A  LTERE   L+L   G  + EIA++L +S +TV 
Sbjct: 163 MASKLITEFAALAKRSEERQQQVPAPKLTEREMEVLRLVARGLGNREIAKELFISENTVK 222

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ +   KL   +R++A+  A+R   +
Sbjct: 223 NHVRNILEKLQLHSRMEAVVYAVREKLL 250


>gi|284050135|ref|ZP_06380345.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
 gi|291569796|dbj|BAI92068.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 236

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIAEKL ++V TV  ++ S   KL A +R QA  +A+R G
Sbjct: 174 PLTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233

Query: 233 YI 234
           +I
Sbjct: 234 WI 235


>gi|290581010|ref|YP_003485402.1| putative response regulator [Streptococcus mutans NN2025]
 gi|254997909|dbj|BAH88510.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 213

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL   +R QA+  
Sbjct: 142 PDLHEDLTARERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVY 201

Query: 228 AIRFGYI 234
           A +   +
Sbjct: 202 AFQHHLV 208


>gi|297618086|ref|YP_003703245.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145923|gb|ADI02680.1| two component transcriptional regulator, LuxR family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 213

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               QV  + +   ++R      LT+RE   L+L   GY+++E+A  L +S  TV  +L 
Sbjct: 129 RVAGQVAKELVRQNRRRD--EMKLTKRERDVLELLVKGYSNKEVAAALFISEKTVKNHLT 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KL+  +R QA+  A++   +
Sbjct: 187 SIFRKLEVKDRTQAVIYALKNKVV 210


>gi|308179160|ref|YP_003918566.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307746623|emb|CBT77595.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 234

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               KR     +LT RE   L+   +G ++ EIA +  LS  TV  ++     KL   +R
Sbjct: 154 AAEPKRDPLLDDLTPREQEVLRALAEGLSNAEIAHRFFLSEATVKTHVRRILTKLHLRDR 213

Query: 222 IQAIAKAIRFGYI 234
           +QA+  A   G +
Sbjct: 214 VQAVVYAYETGLV 226


>gi|298244102|ref|ZP_06967908.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551583|gb|EFH85448.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 216

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LTERE   L+L  +G+T+ +IAE+L +S  TV+ +      KL+  +R + +  A+R G
Sbjct: 153 SLTEREREILKLVAEGFTNNQIAERLVISPKTVDTHRTHIMDKLNLHSRAELVKYAMRRG 212

Query: 233 YI 234
            +
Sbjct: 213 LL 214


>gi|24378972|ref|NP_720927.1| putative response regulator [Streptococcus mutans UA159]
 gi|24376861|gb|AAN58233.1|AE014894_10 putative response regulator [Streptococcus mutans UA159]
          Length = 215

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL   +R QA+  
Sbjct: 144 PDLHEDLTARERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVY 203

Query: 228 AIRFGYI 234
           A +   +
Sbjct: 204 AFQHHLV 210


>gi|327440878|dbj|BAK17243.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 209

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 38/75 (50%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              +     +   +LT+RE   L     G  ++EIAE+L +++ TV  ++ +   KL+  
Sbjct: 134 MARMRGTAPALHNHLTDREMEVLLCMARGLANQEIAEELFIALKTVKTHVSNILSKLEVQ 193

Query: 220 NRIQAIAKAIRFGYI 234
           +R QA+  A + G +
Sbjct: 194 DRTQAVVYAFQNGLV 208


>gi|299821874|ref|ZP_07053762.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817539|gb|EFI84775.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 241

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   K+   +R QA+  AI
Sbjct: 174 PLHLLTHRECEVLQLLTDGKSNRSIGEALFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 233

Query: 230 RFGYI 234
           + G++
Sbjct: 234 KHGWV 238


>gi|205375039|ref|ZP_03227830.1| DegU [Bacillus coahuilensis m4-4]
          Length = 225

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ +   K++  +R QA+  AI
Sbjct: 158 PLHLLTRRECEVLQLLADGCSNRTIGETLYISEKTVKNHVSNILQKMNVNDRTQAVVTAI 217

Query: 230 RFGYI 234
           + G++
Sbjct: 218 KKGWV 222


>gi|167838741|ref|ZP_02465600.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 137

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 9/138 (6%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL--------MLANEVIIEAHGACYQV 156
                       G++ PV         +   ++          +    +     G  +  
Sbjct: 1   MRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDASDILRLLSLSQLLAGFVHAA 60

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + + L+   +R  +   LT RE   LQ AG G T+ EI++ LG+S  T+  +L +A  K+
Sbjct: 61  MQELLDCRLRRQGSCD-LTARERESLQWAGRGKTAWEISKILGISERTIVFHLSNAARKI 119

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A NR QA+  A   G I
Sbjct: 120 GANNRAQAVVMASARGLI 137


>gi|218247165|ref|YP_002372536.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257060237|ref|YP_003138125.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167643|gb|ACK66380.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256590403|gb|ACV01290.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 226

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   LQL  DGY++ +I+E+L ++V TV  ++ +   KL A +R QA  +A+R G
Sbjct: 164 PLTERELEVLQLIVDGYSNAQISEQLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 223

Query: 233 YI 234
            +
Sbjct: 224 LV 225


>gi|284801354|ref|YP_003413219.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578]
 gi|284994496|ref|YP_003416264.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923]
 gi|284056916|gb|ADB67857.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578]
 gi|284059963|gb|ADB70902.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923]
          Length = 212

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L  +G +++EIA++L +++ TV  ++ +   KL   +R QA   A +
Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLGVQDRTQAAIYAFK 205

Query: 231 FGYI 234
              +
Sbjct: 206 HDLV 209


>gi|229000199|ref|ZP_04159768.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|229007721|ref|ZP_04165313.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228753589|gb|EEM03035.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228759531|gb|EEM08508.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 215

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++      +++ S+      LT RE   LQL   G +++EIA  L ++  TV A+
Sbjct: 130 IASALLSQTFPQEEQQESSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S   KL+  +R QA   A++ G +
Sbjct: 190 VSSILGKLNLSDRTQAALYAVKNGIV 215


>gi|156741214|ref|YP_001431343.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM
           13941]
 gi|156232542|gb|ABU57325.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii
           DSM 13941]
          Length = 204

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 3/159 (1%)

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +   +  +L      +  E    ++  LS       +          +  H  G     
Sbjct: 47  VILAADESVLA-DADQVLAEEPRYAALLLSDDPRQADVLRGLPLTAWGILTHDVGAAELA 105

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           +    +A  +I+ A     +++       ++       LT RE   L+L   G ++++IA
Sbjct: 106 AALHAVAQGLIVLAPNLAARLLQARQSPVEE--PTGEPLTARERDVLELVSQGLSNKQIA 163

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +KL +S HTV  +L S   KL   +R +A+ +  R G I
Sbjct: 164 QKLHISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGII 202


>gi|271967187|ref|YP_003341383.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510362|gb|ACZ88640.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V+   + ++  +           ++ +      +   +    LTERE   L+L   G ++
Sbjct: 122 VVAAGDAIVAPSVTRRLLDRFGARLPSAH---QQPTPARLDRLTEREMEVLRLIARGMSN 178

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA +L +S  TV  ++G+   KL   +R+QA+  A   G I
Sbjct: 179 AEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGLI 221


>gi|148654958|ref|YP_001275163.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148567068|gb|ABQ89213.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 204

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----SAARNLTER 177
           RL     G +   +    LA  +   A G         L L  +R           LT R
Sbjct: 86  RLPLTAWGLLSHDAGAAELAAAIQAVAQGLIVFASELALRLLHRRPLSVAEPVGEPLTAR 145

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L   G ++++IA+KL +S HTV  +L S   KL   +R +A+ +  R G I
Sbjct: 146 ERDVLELVSQGLSNKQIAQKLQISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGII 202


>gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241]
 gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241]
          Length = 211

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKITPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNILAKLEVDDRTQAALYAVKHG 209


>gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
 gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
          Length = 213

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|302337759|ref|YP_003802965.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634944|gb|ADK80371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 886

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLELFKKRSSAAR 172
           +   +    ++ G++    +       ++        +    + I   L L +K++S A 
Sbjct: 759 VLLFILPEAYEAGFLRLFVDEGPPLAFILCRLEKKVTNSFLREYIGKILTLIEKKASDAG 818

Query: 173 N-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     L+ RE   L+L   GYT++EIAE+L +SV TV  +  +   KL   NR +A+ K
Sbjct: 819 SCKPVTLSNRELMVLRLLARGYTNKEIAEELFISVRTVKWHTVNIYKKLGVKNRTEAVVK 878

Query: 228 AIRFGYI 234
           A   G I
Sbjct: 879 ANISGII 885


>gi|149182102|ref|ZP_01860586.1| DegU [Bacillus sp. SG-1]
 gi|148850204|gb|EDL64370.1| DegU [Bacillus sp. SG-1]
          Length = 225

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+  DG ++  I E L +S  TV  ++ +   K++  +R QA+   I
Sbjct: 158 PLHLLTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTGI 217

Query: 230 RFGYI 234
           + G++
Sbjct: 218 KNGWV 222


>gi|172040517|ref|YP_001800231.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851821|emb|CAQ04797.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 234

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  +    + + +   A G          +L  + ++    LT RE   L L
Sbjct: 124 SAGAVGYLLKDAPPSKVLDGIRRAARGESVMAPEIMGKLMGQMTNPTEALTPRELEVLAL 183

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G+G ++ +IA  L L+  TV ++L     KL A NR  A+A A + G I
Sbjct: 184 VGEGKSNRDIARHLVLTEATVKSHLSHVFRKLGANNRTSAVAVARQRGII 233


>gi|163846245|ref|YP_001634289.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524000|ref|YP_002568470.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163667534|gb|ABY33900.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447879|gb|ACM52145.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK-----KRSSAARN 173
               GY++  ++   +   + I A G          +V+ +F  L       + S  A  
Sbjct: 96  AGARGYMLKDADSSDIVASIRIVARGEALIQPSITRKVLAEFSRLAASAPATRPSPLAEP 155

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L     G+++ EIA++L +S  TV  Y+ S   KL   +R QAI +A   G 
Sbjct: 156 LTEREMDVLHGIAAGHSNREIADQLCISEGTVKNYVSSLLAKLAVRDRTQAIIRARELGL 215

Query: 234 I 234
           +
Sbjct: 216 L 216


>gi|320547873|ref|ZP_08042156.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320447413|gb|EFW88173.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 214

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              ++     +LT RE   L+L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 138 AHDQKPELHEDLTARERDILKLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 197

Query: 223 QAIAKAIRFGYI 234
           QA+  A +   +
Sbjct: 198 QAVVYAFKHHLV 209


>gi|289550436|ref|YP_003471340.1| Two-component response regulator-like protein [Staphylococcus
           lugdunensis HKU09-01]
 gi|289179968|gb|ADC87213.1| Two-component response regulator-like protein [Staphylococcus
           lugdunensis HKU09-01]
          Length = 207

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
             ++      +      +E   K+      L++RE   L+    G T+ EIAE L +S  
Sbjct: 117 RRVLAGERIIHPEAKTVMEAVAKKPHYTNKLSKREIDVLREMVKGKTNREIAETLFVSEK 176

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+  ++     KL   +R QA   A++   I
Sbjct: 177 TIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207


>gi|167645327|ref|YP_001682990.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347757|gb|ABZ70492.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 257

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 15/241 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP------RRQQLICELHNYDLDS 61
           G++   L  ++     +++  +         ++ +  P        + L   +  +   S
Sbjct: 5   GEEIERLARVAALAERVRDLGRGVGLPYVAASADISSPEPMLGLDGKPLAETIFEWLDAS 64

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGI 118
                         F+        P  +          +                  A I
Sbjct: 65  LYYWRDRAFALRAPFILAARCTAEPFFYHQGRFASWRPLARLEAIEVGEAAKAFGVEAAI 124

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSSAARN 173
             P  L     G V++ S   +     +      E HGA  ++++ + +           
Sbjct: 125 IAPAHLTGGVIGAVVWASAEPLADLPALYAARSDELHGAALRLVSAYRDGCDDDVPPV-R 183

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE  CL+ A  G T  +IA+ +G++  TV  ++ +A +KL    R QA+ +A   GY
Sbjct: 184 LTKREIQCLKWAAAGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAVHRATGLGY 243

Query: 234 I 234
           I
Sbjct: 244 I 244


>gi|313902397|ref|ZP_07835800.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467328|gb|EFR62839.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 218

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              +V+       ++ +         LT RE   LQL  +G ++ EI ++L +S  TV  
Sbjct: 130 LSARVLNLGTRRRERWTPLGGGIPEPLTRREFEVLQLVAEGVSNREIGQRLFISEKTVKN 189

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ S   KL   +R QA+  AIR G++
Sbjct: 190 HITSIFRKLGVADRTQAVIHAIREGWV 216


>gi|297531388|ref|YP_003672663.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254640|gb|ADI28086.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
          Length = 224

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I   L +S  TV  ++ S   KL+  +R QA+  AI
Sbjct: 157 PLHLLTRRECEVLQLLADGKSNRAIGGALYISEKTVKNHVSSILQKLNVNDRTQAVVVAI 216

Query: 230 RFGYI 234
           + G++
Sbjct: 217 KNGWV 221


>gi|288919634|ref|ZP_06413962.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288348923|gb|EFC83172.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 90

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT+RE   L+L   G  + +IA++L +S +TV  ++ +   KL   +R++
Sbjct: 17  DDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRME 76

Query: 224 AIAKAIRFGYI 234
           A+  A+R   +
Sbjct: 77  AVVYAVREKLL 87


>gi|219847289|ref|YP_002461722.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219541548|gb|ACL23286.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           +  +  A       H A    +       +        LT RE   L+L   G +++EIA
Sbjct: 114 AHAIRAARRGEAVLHPAVAAKLMQEFNTPRPNEPPVEQLTPREMDVLRLVAKGMSNKEIA 173

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + L +S  TV  ++ +   KL   +R Q    A+R   +
Sbjct: 174 DTLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKRLV 212


>gi|298346055|ref|YP_003718742.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315657448|ref|ZP_07910330.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236116|gb|ADI67248.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315491920|gb|EFU81529.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 248

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT+RET  L L   G T++EIA +L +S+ TV  ++G+   K+ A +R+QA+  A   
Sbjct: 184 DSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFAYEN 243

Query: 232 GYI 234
           G +
Sbjct: 244 GLV 246


>gi|163740079|ref|ZP_02147482.1| response regulator [Phaeobacter gallaeciensis BS107]
 gi|161386628|gb|EDQ10994.1| response regulator [Phaeobacter gallaeciensis BS107]
          Length = 265

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 82/253 (32%), Gaps = 45/253 (17%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           + ++ +S   L  +   I   +        T+      P          N       +P 
Sbjct: 8   SLERCNSTDALWAQALQIFATMGFDYAIYLTVEGDRSHPH------IHTNLPQIYEQLP- 60

Query: 67  ILIETYGDDFLFHFNSGLLP-IIWQS-IQEETVIESSGQLSVRLE-GGLLPFAGIAFPVR 123
               ++ D FL H  +   P       + +   +E+     +R         AGIA PVR
Sbjct: 61  ----SHRDPFLDHCCNSYEPQFTGTEFLSDHPYLEAEEMAFIREASAKTGFRAGIAIPVR 116

Query: 124 L-GFHKNGYVIFTSEFLMLAN--------EVIIEAHGACYQVITDFLE------------ 162
           L G  + G     +     +         + +       ++ + +  +            
Sbjct: 117 LQGSDRFGGFNLGTARSRDSFIAHVTGKTDSLRFLCLIIHRRMEELRQTASSPAANPYEP 176

Query: 163 ----------LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                     L     +A   L+ RE   L L   G TS+E A    +S HTV+ Y  S 
Sbjct: 177 DAEGAGFDRPLIAPPPAALTRLSPREREVLYLFSQGLTSKECAAVCKISPHTVSEYANSI 236

Query: 213 TVKLDAVNRIQAI 225
             KL+  NR++AI
Sbjct: 237 YRKLNVRNRVEAI 249


>gi|327441352|dbj|BAK17717.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 224

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   LQL  DG ++  I E L +S  TV  ++ S   K++  +R QA+  AI
Sbjct: 157 PFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAI 216

Query: 230 RFGYI 234
           + G++
Sbjct: 217 KNGWV 221


>gi|299536017|ref|ZP_07049336.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis
           ZC1]
 gi|298728622|gb|EFI69178.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis
           ZC1]
          Length = 224

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   LQL  DG ++  I E L +S  TV  ++ S   K++  +R QA+  AI
Sbjct: 157 PFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAI 216

Query: 230 RFGYI 234
           + G++
Sbjct: 217 KNGWV 221


>gi|288555323|ref|YP_003427258.1| two-component response regulator LiaR [Bacillus pseudofirmus OF4]
 gi|288546483|gb|ADC50366.1| LiaR two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 214

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQV---ITDFLELFKKRSSAARNLTERET 179
                Y++ TS    +A  +   A G      +V   + + +   +K  +    LT RE 
Sbjct: 100 AGAFSYLLKTSSAKEIAQAIRQAADGEPVLASKVTNKMMNHMR-SQKEKALHEELTPREL 158

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L G G +++EIAE L + + TV  ++ +   KL   +R Q    A R G +
Sbjct: 159 EVLKLIGVGQSNQEIAESLFIGIKTVKTHVSNILQKLALEDRTQIAIYAHRHGLV 213


>gi|126652487|ref|ZP_01724659.1| DegU [Bacillus sp. B14905]
 gi|169826725|ref|YP_001696883.1| transcriptional regulatory protein degU [Lysinibacillus sphaericus
           C3-41]
 gi|126590758|gb|EAZ84873.1| DegU [Bacillus sp. B14905]
 gi|168991213|gb|ACA38753.1| Transcriptional regulatory protein degU (Protease production
           enhancer protein) [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   LQL  DG ++  I E L +S  TV  ++ S   K++  +R QA+  AI
Sbjct: 157 PFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAI 216

Query: 230 RFGYI 234
           + G++
Sbjct: 217 KNGWV 221


>gi|70726072|ref|YP_252986.1| two-component response regulator [Staphylococcus haemolyticus
           JCSC1435]
 gi|88952437|sp|Q4L7J5|VRAR_STAHJ RecName: Full=Response regulator protein vraR
 gi|68446796|dbj|BAE04380.1| two-component response regulator [Staphylococcus haemolyticus
           JCSC1435]
          Length = 209

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|27468487|ref|NP_765124.1| two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57867340|ref|YP_188991.1| DNA-binding response regulator VraR [Staphylococcus epidermidis
           RP62A]
 gi|251809910|ref|ZP_04824383.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874566|ref|ZP_06283451.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367802|ref|ZP_06614451.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674015|sp|Q5HN50|VRAR_STAEQ RecName: Full=Response regulator protein vraR
 gi|81842704|sp|Q8CNP9|VRAR_STAES RecName: Full=Response regulator protein vraR
 gi|27316034|gb|AAO05168.1|AE016749_114 two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57637998|gb|AAW54786.1| DNA-binding response regulator VraR [Staphylococcus epidermidis
           RP62A]
 gi|251806575|gb|EES59232.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296705|gb|EFA89214.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318141|gb|EFE58538.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726870|gb|EGG63328.1| response regulator protein VraR [Staphylococcus epidermidis VCU144]
 gi|329734717|gb|EGG71023.1| response regulator protein VraR [Staphylococcus epidermidis VCU045]
 gi|329734803|gb|EGG71108.1| response regulator protein VraR [Staphylococcus epidermidis VCU028]
          Length = 209

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|242241722|ref|ZP_04796167.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242234812|gb|EES37123.1| response regulator [Staphylococcus epidermidis W23144]
          Length = 209

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 211

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ S    LT+RE   LQ    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKITPALLGRSAIKKEKESPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNILAKLEVDDRTQAALYAVKHG 209


>gi|288904712|ref|YP_003429933.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306830715|ref|ZP_07463880.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977633|ref|YP_004287349.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731437|emb|CBI12989.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304427223|gb|EFM30330.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177561|emb|CBZ47605.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 214

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               GY++ TS    +  A + +     A    +   ++    +     +LT RE   L+
Sbjct: 99  AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDMQPELHEDLTARERDILR 158

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +   +
Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209


>gi|16330984|ref|NP_441712.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1653479|dbj|BAA18392.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 222

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 149 AHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           A            E  +  S +    +  LTERE   LQL  DG ++ +IAEKL ++V T
Sbjct: 132 AIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIVDGCSNADIAEKLYITVGT 191

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++ +   KL A +R QA  +AIR G +
Sbjct: 192 VKTHVRNILNKLCANDRTQAAVRAIRSGLV 221


>gi|282899743|ref|ZP_06307706.1| orrA (Two Component Transcriptional Regulator, LuxR family)
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195358|gb|EFA70292.1| orrA (Two Component Transcriptional Regulator, LuxR family)
           [Cylindrospermopsis raciborskii CS-505]
          Length = 238

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 44/74 (59%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L +  ++   +  LT+RE   L+L  DG ++ +IAEKL ++V TV  ++ +   KL A +
Sbjct: 164 LAIEYEQVLESSPLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADD 223

Query: 221 RIQAIAKAIRFGYI 234
           R QA  +A+R G +
Sbjct: 224 RTQAAVRALRSGLV 237


>gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 211

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +   L + +++  +   LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALLGILSVKEEKQDSFSMLTKREKEVLREITKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+  +R QA   A++ G +
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKNGVV 211


>gi|52079413|ref|YP_078204.1| putative transcriptional regulator YhcZ [Bacillus licheniformis
           ATCC 14580]
 gi|52784773|ref|YP_090602.1| YhcZ [Bacillus licheniformis ATCC 14580]
 gi|52002624|gb|AAU22566.1| putative transcriptional regulator YhcZ [Bacillus licheniformis
           ATCC 14580]
 gi|52347275|gb|AAU39909.1| YhcZ [Bacillus licheniformis ATCC 14580]
          Length = 217

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               V     +  +K       LT RE   L     G +++EIA  L +S  TV  ++ +
Sbjct: 131 IMSHVFHHVSQADEKE--KIHQLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSN 188

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL   +R QA   A++ G 
Sbjct: 189 LLSKLGLSDRTQAALFAVKHGL 210


>gi|170076532|ref|YP_001733171.1| response regulator receiver [Synechococcus sp. PCC 7002]
 gi|169887394|gb|ACB01102.1| Response regulator receiver, LuxR domain [Synechococcus sp. PCC
           7002]
          Length = 231

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            +            Q      E+ +   +    LT+RE   L L  +G ++ EIAE L +
Sbjct: 125 ASWWDAQATQQIRAQFQQPMAEMPRSVPAQDNPLTQREGEILALIANGKSNSEIAETLYI 184

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  TV  ++ +   KL+A +R QA+  A+R G I
Sbjct: 185 AASTVRVHVHAILQKLEARDRTQAVVIALRHGLI 218


>gi|83589824|ref|YP_429833.1| two component LuxR family transcriptional regulator [Moorella
           thermoacetica ATCC 39073]
 gi|83572738|gb|ABC19290.1| two component transcriptional regulator, LuxR family [Moorella
           thermoacetica ATCC 39073]
          Length = 222

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +  +  LT RE   L     G ++ EIA +L +S  TV  +L     K+   +R QA  
Sbjct: 150 PAPVSIPLTAREREILIHVSLGKSNREIARELFISEKTVKNHLTHIFHKIGVSDRTQAAL 209

Query: 227 KAIRFGY 233
            A++ G 
Sbjct: 210 YALKHGL 216


>gi|313884941|ref|ZP_07818693.1| putative oxygen regulatory protein NreC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619632|gb|EFR31069.1| putative oxygen regulatory protein NreC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 211

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +   +      LT RE   L L   GY+++EIA++L +++ TV  ++ +   KL+  +R 
Sbjct: 138 IKDSQPQLHDELTRREYEVLLLIAKGYSNQEIADELFITLKTVKTHVSNILAKLEVSDRT 197

Query: 223 QAIAKAIRFGYI 234
           QA   A +   +
Sbjct: 198 QATIYAYQHKLV 209


>gi|323464084|gb|ADX76237.1| two-component response regulator [Staphylococcus pseudintermedius
           ED99]
          Length = 208

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H    QV+   +     +      L++RET  L+    G T++EIAE L +S  T+  ++
Sbjct: 128 HKDAQQVMDTVIT----KPHMLNKLSKRETEVLKEMAKGKTNKEIAETLFVSEKTIKTHV 183

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL+  +R QA   A+    +
Sbjct: 184 SHIFSKLEVTDRTQAAIYAMENHLV 208


>gi|108804387|ref|YP_644324.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765630|gb|ABG04512.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 220

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 19/162 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +          QL  RL       A I              +             +E + 
Sbjct: 56  VDVRMPRMDGIQLIERLGREHPEVAAIILTTFDDDEYVFRGLRAGARGYILKDTPSEELA 115

Query: 148 EAHGACYQ------------VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSE 192
            A    ++            VI++   L K  +        L+ERE   L+L   G ++ 
Sbjct: 116 AAIEKVHRGEAVLDGPITLKVISELGRLSKGPAGPQPGSGGLSEREMEVLRLVASGASNR 175

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  L ++  TV  ++ S   KL   +R QA   A+  G+I
Sbjct: 176 EIARALYITEGTVKNHISSILRKLGFRDRTQAALYALERGWI 217


>gi|295705373|ref|YP_003598448.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803032|gb|ADF40098.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 213

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   LQL   G ++ +I+ +L +S HTV ++L +   KL   NR+Q  + A 
Sbjct: 148 PDTPLSARELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQLTSYAF 207

Query: 230 RFGY 233
           + G 
Sbjct: 208 QNGL 211


>gi|257143112|ref|ZP_05591374.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 296

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 12/221 (5%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 78  LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 135

Query: 84  LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W     +         +    +R+       +G+ + + +   +      FT+  
Sbjct: 136 SMPVVWDLRQLARDHAARGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 195

Query: 139 LMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                        + A G           +   R  AA  LT  E   L    +G + +E
Sbjct: 196 RSRDWISSATLEQVLALGLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDKE 255

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 256 IGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASSRGLI 296


>gi|325271130|ref|ZP_08137690.1| response regulator [Pseudomonas sp. TJI-51]
 gi|324103735|gb|EGC01022.1| response regulator [Pseudomonas sp. TJI-51]
          Length = 241

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 59/219 (26%), Gaps = 14/219 (6%)

Query: 15  QELSP-RLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +++    L  +   +K+    +    +            C   N D       +      
Sbjct: 31  EDVRRQILVDVTRLLKSDFGASYVCDDRRAV-----STRCVSLNIDSRKLIEYDSHR-HV 84

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D   +   S         + +   +E+S               GI           G +
Sbjct: 85  NDIVTWKMRSLRTATCVDDVIDRKSLEASEHYV-DFLKPCGMHHGINVFFFDQGRDIGDL 143

Query: 133 IFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
                    +     +   +            L          LT RE S ++    G +
Sbjct: 144 RIWRSADQPSFNYRDVAMLNALTPYF---EQSLSCVSPPPGVGLTRREVSVIEHVAAGCS 200

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            +EIA  +G+   TV  +L +A  K  A NR +   +  
Sbjct: 201 DKEIARLMGIGFTTVRTHLKNAMHKTGASNRTELAVRGR 239


>gi|269926224|ref|YP_003322847.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789884|gb|ACZ42025.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 218

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYL 209
              +V+ +F +   +++      LT+RE   L+L   G  +++EIAE+L LS  TV  +L
Sbjct: 127 LARKVLQEFAQPKIERKKRPDAELTDREREILELLVQGITSNKEIAERLFLSESTVKYHL 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL   NR Q +A A++ G I
Sbjct: 187 HNILNKLHLQNRAQVVAYALQHGLI 211


>gi|314934012|ref|ZP_07841377.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
 gi|313654162|gb|EFS17919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
          Length = 207

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIA+ L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|242374097|ref|ZP_04819671.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348222|gb|EES39824.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 207

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIA+ L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|223043570|ref|ZP_03613615.1| two-component response regulator [Staphylococcus capitis SK14]
 gi|222443058|gb|EEE49158.1| two-component response regulator [Staphylococcus capitis SK14]
          Length = 207

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T++EIA+ L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|304390186|ref|ZP_07372140.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326668|gb|EFL93912.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 248

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 147 IEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                   Q+  +  E  +      +   +LT+RET  L L   G T++EIA +L +S+ 
Sbjct: 156 RMLEMFAPQLPGEQDEAEEANLVDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMT 215

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  ++G+   K+ A +R+QA+  A   G +
Sbjct: 216 TVKTHVGNILNKIGARDRVQAVIFAYENGLV 246


>gi|289550400|ref|YP_003471304.1| Two component transcriptional regulator VraR [Staphylococcus
           lugdunensis HKU09-01]
 gi|315660134|ref|ZP_07912991.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|289179932|gb|ADC87177.1| Two component transcriptional regulator VraR [Staphylococcus
           lugdunensis HKU09-01]
 gi|315494815|gb|EFU83153.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 209

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180
           L    + Y++ T+    +A  V    HG      +V+       KKR+     LTERE  
Sbjct: 95  LDAGVDSYILKTTSAKDIAEAVRKTYHGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L   GY+++EIA    +++ TV  ++ +   KL+  +R QA+  A +   I
Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|319892925|ref|YP_004149800.1| Two component transcriptional regulator VraR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162621|gb|ADV06164.1| Two component transcriptional regulator VraR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464027|gb|ADX76180.1| two-component response regulator VraR [Staphylococcus
           pseudintermedius ED99]
          Length = 209

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 42/81 (51%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +V+       K+R+     LTERE   L L   GY+++EIA    +++ TV  ++ +  
Sbjct: 128 AEVLVKMRNRMKQRAELYELLTEREMEILLLISKGYSNQEIASASHITIKTVKTHVSNIL 187

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL+  +R QA+  A + G I
Sbjct: 188 SKLEVQDRTQAVIYAFQHGLI 208


>gi|319646806|ref|ZP_08001035.1| YhcZ protein [Bacillus sp. BT1B_CT2]
 gi|317391394|gb|EFV72192.1| YhcZ protein [Bacillus sp. BT1B_CT2]
          Length = 216

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               V     +  +K       LT RE   L     G +++EIA  L +S  TV  ++ +
Sbjct: 131 IMSHVFHHVSQADEKE--KIHQLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSN 188

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL   +R QA   A++ G 
Sbjct: 189 LLSKLGLSDRTQAALFAVKHGL 210


>gi|228958531|ref|ZP_04120251.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229044008|ref|ZP_04191697.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229127661|ref|ZP_04256650.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296502827|ref|YP_003664527.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
 gi|228655738|gb|EEL11587.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228725289|gb|EEL76557.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228801158|gb|EEM48055.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296323879|gb|ADH06807.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
          Length = 192

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 106 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 165

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 166 SNVLAKLEVDDRTQAALYAVKHG 188


>gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
 gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
          Length = 213

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|159900604|ref|YP_001546851.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893643|gb|ABX06723.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 191

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176
            P  +   +   V+ T  +       +         +    L               L+E
Sbjct: 72  LPHPMPQQRAWGVVSTDAYPQEIWASLQALQLGLCVLSPSILAQIHSPPQPEPLDNQLSE 131

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   LQL  +G T+ +IA++L +S HTV  ++ +   KLD  +R +AI    + G I
Sbjct: 132 REHEVLQLLAEGLTNRQIAQRLIISEHTVKFHVSALLGKLDVSSRTEAIRVGAQRGLI 189


>gi|222084851|ref|YP_002543380.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722299|gb|ACM25455.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI-PNILIETYGDD 75
           L   L ++ + + A ++ L   +                ++  D      + L   YG  
Sbjct: 42  LQSGLRVLTDYVGASHYLLARCDL---IQESGLDFVVSSDWPFDLVRRLASELTNGYGRA 98

Query: 76  F-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             L    S   P+          +E    +S             A    +G  +   ++ 
Sbjct: 99  GELEKSMSLFQPVF---AFLPDDVEPPEGVS---------RHYCALTFNVGRTRFSLMLL 146

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             + L+L+ E + +           F    + +     +LTERE  CL    +G TS+EI
Sbjct: 147 ARDSLLLSPERLRDVGLLAGY-FASFTRSVEGKLERDFDLTERELECLFWIAEGKTSDEI 205

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 206 AMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 245


>gi|311743637|ref|ZP_07717443.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum
           DSM 15272]
 gi|311312767|gb|EFQ82678.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum
           DSM 15272]
          Length = 220

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++ +F+++  +  + A +LT RE   L+    G+++ EIA +L +S +TV  ++ +
Sbjct: 136 MATKLLDEFVQIS-RTPAPAASLTARELQVLRHVAKGFSNREIAGELFISENTVKNHIRN 194

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R++A   A+R   +
Sbjct: 195 ILEKLQMKSRMEAAMYAVRSRLV 217


>gi|258516412|ref|YP_003192634.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780117|gb|ACV64011.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 224

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K   +    LT RE   LQL     ++ EIA++L +S  TV  ++ +   KL   NR 
Sbjct: 149 VMKGNLANGNTLTRREMEILQLIAISLSNREIAKRLFISEPTVKTHVSNILRKLGQQNRS 208

Query: 223 QAIAKAIRFGYI 234
           QAI  + + G I
Sbjct: 209 QAIVYSYKNGLI 220


>gi|91776759|ref|YP_546515.1| LuxR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710746|gb|ABE50674.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus
           KT]
          Length = 272

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 18/173 (10%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRL-----EGGLLPFAGIAFPVRLGFHKNGY 131
           +  +     P++   I       + G+ +V                 A+ +         
Sbjct: 101 IQAWRQTSQPVL---IDPYLKDGNFGRFTVPKIDQVNLQESELRNIAAYGLSSADGSISS 157

Query: 132 VIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---------TERETSC 181
               S     L              + +  + +     +    +         T RE   
Sbjct: 158 FFSFSRISGELNASHAYMLELLVPYLHSVLMRVSDGVFNFGDAMGEGVNAGIITPREKEI 217

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQ    G ++ EIA  L +S  TV  ++ +   KLD  NR  A AKA R G I
Sbjct: 218 LQWVHTGKSNWEIATILEISPLTVKNHMQNILRKLDVQNRSHAAAKAYRLGLI 270


>gi|294498204|ref|YP_003561904.1| two-component response regulator LiaR [Bacillus megaterium QM
           B1551]
 gi|294348141|gb|ADE68470.1| two-component response regulator LiaR [Bacillus megaterium QM
           B1551]
          Length = 208

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 39/75 (52%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +   +K S     LT RE   L L   G T++EIA++L +++ TV  ++ +   KLD  
Sbjct: 133 MMSKMRKPSLPHEELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQ 192

Query: 220 NRIQAIAKAIRFGYI 234
           +R QA+  A +   +
Sbjct: 193 DRTQAVIYAFKHKLV 207


>gi|270308323|ref|YP_003330381.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154215|gb|ACZ62053.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 232

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLE--LFKKRSSAARNL 174
           +R G         TSE L+ A    +  H         + I  ++E             L
Sbjct: 94  LRAGARAYVLKDSTSEELVRAVREAMLGHRYLSPPLSEKAIEAYMEKSAEATSLDPYETL 153

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   GYT  EIAEKL +S  TV  +  +   KLD  N+ Q +  A++ G I
Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|315657926|ref|ZP_07910800.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|315496962|gb|EFU85283.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 207

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T+ EIAE L +S  T+  ++     KL   +R QA   A++  
Sbjct: 146 KLSKREIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNN 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|229178632|ref|ZP_04305996.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228604790|gb|EEK62247.1| DNA-binding response regulator [Bacillus cereus 172560W]
          Length = 192

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 106 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 165

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 166 SNVLAKLEVDDRTQAALYAVKHG 188


>gi|126650153|ref|ZP_01722386.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593325|gb|EAZ87287.1| two-component response regulator [Bacillus sp. B14905]
          Length = 210

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +    +LT+RE   L L   G  ++EIA++L +++ TV  ++ +   KL+  +R QA+  
Sbjct: 143 TPLYDHLTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVY 202

Query: 228 AIRFGY 233
           A + G 
Sbjct: 203 AFQNGL 208


>gi|302552997|ref|ZP_07305339.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302470615|gb|EFL33708.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 227

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARN--- 173
           +R G         +S+ L  A  VI             ++I +F  L  +  +  +    
Sbjct: 101 LRAGASGFLLKDASSDQLAEAVRVIAAGDALLAPVITRKLIAEFSRLDDRPRAPLKERIG 160

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERET  L L   G ++ EIA  L ++  TV  ++G   VKL   +R QA   A   G
Sbjct: 161 DLTERETEVLALIAQGLSNAEIARHLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 220

Query: 233 YI 234
            +
Sbjct: 221 LV 222


>gi|309790732|ref|ZP_07685281.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308227223|gb|EFO80902.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 193

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176
           L     GYV+  S        V     G          Q++       +  S     LT 
Sbjct: 75  LRAGVVGYVLKDSTRRTFVAAVRQALRGETFINGSMTVQLLQRLATTHESSSPPRIQLTR 134

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   LQL   G T+ EI + L +SV TV  ++     KL   +R QA  +AI  G +
Sbjct: 135 REQEVLQLITQGKTNREIGQLLNISVGTVKIHVEHIIAKLGVSDRTQAAVRAIDLGLL 192


>gi|294500004|ref|YP_003563704.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349941|gb|ADE70270.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 213

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 35/70 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +     L+ RE   LQL   G ++ +I+ +L +S HTV ++L +   KL   NR+Q
Sbjct: 142 ETSITKPDTPLSARELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQ 201

Query: 224 AIAKAIRFGY 233
             + A + G 
Sbjct: 202 LTSYAFQNGL 211


>gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 209

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 123 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 182

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 183 SNVLAKLEVDDRTQAALYAVKHG 205


>gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 211

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A+++G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKYG 209


>gi|329731507|gb|EGG67870.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 209

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|172058475|ref|YP_001814935.1| two component LuxR family transcriptional regulator
           [Exiguobacterium sibiricum 255-15]
 gi|171990996|gb|ACB61918.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sibiricum 255-15]
          Length = 231

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LT RE   LQL  DG+++  I++ L +S  TV  ++ S   K++  +R  A+ +A
Sbjct: 163 APLHVLTRRECEVLQLLADGFSNRAISDTLFISEKTVKNHVSSILRKMNVPDRTGAVVEA 222

Query: 229 IRFGYI 234
           IR G++
Sbjct: 223 IRRGWV 228


>gi|296269819|ref|YP_003652451.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296092606|gb|ADG88558.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 226

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 157 ITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
               L    ++ + A    LTERE   L+L   G ++ EIA +L +S  TV  ++G+   
Sbjct: 141 FAALLPPADRQPTPALLERLTERELEVLRLIAKGMSNAEIAAELVVSETTVKTHVGNVLT 200

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +R+QA+  A   G +
Sbjct: 201 KLGLRDRVQAVVLAYETGLV 220


>gi|242371807|ref|ZP_04817381.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350508|gb|EES42109.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 212

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 132 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 191

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 192 KLEVQDRTQAVIYAFQHNLI 211


>gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI]
 gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 209

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               K+ +    LT+RE   LQ    G +++EIA +L ++  TV  ++ +   KL+  +R
Sbjct: 137 RSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDR 196

Query: 222 IQAIAKAIRFG 232
            QA   A++ G
Sbjct: 197 TQAALYAVKHG 207


>gi|269125776|ref|YP_003299146.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310734|gb|ACY97108.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 220

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 43/82 (52%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+T F ++   + +A   LTERE   LQL   G ++ EIA+ L LS  TV  ++ +
Sbjct: 136 IARRVLTYFADMPDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTLFLSPKTVRNHVSN 195

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
             +KL   +R QAI  A   G 
Sbjct: 196 IFMKLHVADRAQAIVLAREAGL 217


>gi|326330817|ref|ZP_08197118.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951347|gb|EGD43386.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 209

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 48/154 (31%), Gaps = 11/154 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +       S  ++  RL         +              I                ++
Sbjct: 55  LDLRMPGTSGVEVIERLRAKESRTGVLVLTTFDTDTDVVAAIEAGATGYLLKDAPTTDLV 114

Query: 148 EAHGACYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           EA  A           +   L    +    +  L+ RE   L L   G T+  IA KL +
Sbjct: 115 EAVRATAAGETVLSPAVATRLASRLRSPGPSAQLSPREREVLTLVARGTTNRVIAAKLFV 174

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV  +LG    KL   +R  A+A+A   G +
Sbjct: 175 SEATVKTHLGHIFDKLGVTDRAAAVARAYDRGIL 208


>gi|297583325|ref|YP_003699105.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141782|gb|ADH98539.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 235

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           F E+  +R      LT RE   LQL  DG ++  I E L +S  TV  ++ +   K+   
Sbjct: 160 FREVEYRR--PLHLLTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKMGMN 217

Query: 220 NRIQAIAKAIRFGYI 234
           +R QA+  AI+ G++
Sbjct: 218 DRTQAVVDAIKNGWV 232


>gi|329314560|gb|AEB88973.1| Response regulator protein vraR [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 209

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|217976880|ref|YP_002361027.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
 gi|217502256|gb|ACK49665.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
          Length = 242

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 14/238 (5%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
             +  + + S  +L+  L L++      +      +        +  I +         D
Sbjct: 8   EQIQIEVAES--QLNELLGLVRRIYDLHSLIYLCPSFM-GHSLSEPFIVQPTC--PGWAD 62

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
              I  +   D         +LP+ W  ++  +  +          G      G+  PVR
Sbjct: 63  RQKIQSQLLVDSMTSAIARAVLPMDWAQLRRRSAQKRGIHFLPNSLGNN--RQGVTIPVR 120

Query: 124 LGFHKNGYVIFTSEFL------MLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTE 176
                   ++  +            +E+  +     Y V     +L     S+ A ++T 
Sbjct: 121 GPSGGYWALLIATSNETHLQWTARRHELTKDLVQIAYYVHARACDLHGVSYSADAADVTS 180

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   LQ   +G    EIA ++ +S  TV A L SA VKL A+NR  A AKA+  G I
Sbjct: 181 REIEALQFMAEGKMIVEIATRMRVSQSTVLALLESARVKLHALNRAHAAAKALGVGLI 238


>gi|311032412|ref|ZP_07710502.1| two-component response regulator-like protein [Bacillus sp. m3-13]
          Length = 210

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H      +          ++    LT+RE   L     G +++EIA  L ++  TV  +
Sbjct: 125 LHPKVTSHVMSHFTKGFGSTNLHEELTKRELEVLAEIAKGKSNKEIASSLFITEKTVKTH 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   KL+  +R QA   A++ G 
Sbjct: 185 VSNILAKLEVADRTQAALYAVKHGI 209


>gi|163743438|ref|ZP_02150817.1| response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161383268|gb|EDQ07658.1| response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 265

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 82/253 (32%), Gaps = 45/253 (17%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           + ++ +S   L  +   I   +        T+      P          N       +P 
Sbjct: 8   SLERCNSTDALWAQALQIFATMGFDYAIYLTVEGDRSHPH------IHTNLPQIYEQLP- 60

Query: 67  ILIETYGDDFLFHFNSGLLP-IIWQS-IQEETVIESSGQLSVRLE-GGLLPFAGIAFPVR 123
               ++ D FL H  +   P       + +   +E+     +R         AGIA PVR
Sbjct: 61  ----SHRDPFLDHCCNSYEPQFTGTEFLSDHPYLEAEEMAFIREASAKTGFRAGIAIPVR 116

Query: 124 L-GFHKNGYVIFTSEFLMLAN--------EVIIEAHGACYQVITDFLE------------ 162
           L G  + G     +     +         + +       ++ + +  +            
Sbjct: 117 LQGSDRFGGFNLGTARSRDSFIAHVTGKTDSLRFLCLIIHRRMEELRQTASSPAANPSEP 176

Query: 163 ----------LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                     L     +A   L+ RE   L L   G TS+E A    +S HTV+ Y  S 
Sbjct: 177 DAEGAGFDRPLIAPPPTALTRLSPREREVLYLFSQGLTSKECAAVCKISPHTVSEYANSI 236

Query: 213 TVKLDAVNRIQAI 225
             KL+  NR++AI
Sbjct: 237 YRKLNVRNRVEAI 249


>gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 219

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 133 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 192

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 193 SNVLAKLEVDDRTQAALYAVKHG 215


>gi|300088311|ref|YP_003758833.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528044|gb|ADJ26512.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 231

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +V+ +F EL +          LT+RE   L    DG T+++IA +L +S  T+  ++
Sbjct: 135 IAQRVLRNFQELAEDDDGLDVVTPLTQRERQILIRVTDGLTNKQIATELKISEQTIKNHI 194

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+A +R  A   AIR GYI
Sbjct: 195 SAILRKLNANDRAHAAVLAIRRGYI 219


>gi|262164556|ref|ZP_06032294.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
 gi|262026936|gb|EEY45603.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
          Length = 224

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 30/238 (12%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S      + ++S+ +    L      I    F++  +        R  L    H +   
Sbjct: 9   LSNQLRCTENATSIHDWFDELK---KDISFE-FSILGVFG-----ERYSLEPICHGFSPT 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                        D F+  F      I+   +      +   +L   L G       I  
Sbjct: 60  QFSTCFGNKRPENDPFVAAFQQSGQGIM-ALMDPYNHPDYGKRLL--LAGQHGEKKAIFL 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLT 175
                                +++ I   +     +      + ++            LT
Sbjct: 117 TSFGN-------------RHPSSDEIDTLYLLTPHLYMASDSIAQQSQQLHLPPPLNPLT 163

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +RE   L     G ++ EI+  L +S  TV  +L +   KL+  NR  AIAKAI  G+
Sbjct: 164 DRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|228475909|ref|ZP_04060619.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           SK119]
 gi|314936099|ref|ZP_07843446.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
 gi|228270064|gb|EEK11534.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           SK119]
 gi|313654718|gb|EFS18463.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
          Length = 207

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G T+++IA+ L +S  TV  ++     KL   +R QA   AI   
Sbjct: 146 KLSKREMEVLKEMVKGKTNKDIAKSLFVSEKTVKTHVSHIFNKLQVSDRTQAAIYAIENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|261420594|ref|YP_003254276.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768265|ref|YP_004133766.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261377051|gb|ACX79794.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317113131|gb|ADU95623.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 224

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   KL   +R QA+  AI
Sbjct: 157 PLHLLTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLSVNDRTQAVVVAI 216

Query: 230 RFGYI 234
           + G++
Sbjct: 217 KNGWV 221


>gi|170078560|ref|YP_001735199.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886229|gb|ACA99942.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 251

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                  ++   +  LT+RE   LQL  DG ++ EIAE L ++V TV  ++ +   KL A
Sbjct: 175 QATSPEDQQLLESCPLTDRELEVLQLIVDGCSNSEIAEHLFITVGTVKTHVRNILNKLCA 234

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QA  +A+R G +
Sbjct: 235 DDRTQAAVRALRSGLV 250


>gi|47093968|ref|ZP_00231703.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|258611471|ref|ZP_05711518.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|47017667|gb|EAL08465.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|258600349|gb|EEW13674.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
          Length = 171

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L  +G +++EIA++L +++ TV  ++ +   KLD  +R QA   A +
Sbjct: 105 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 164

Query: 231 FGYI 234
              +
Sbjct: 165 HDLV 168


>gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 211

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A+++G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKYG 209


>gi|332978068|gb|EGK14806.1| nitrate/nitrite response regulator protein NarL [Desmospora sp.
           8437]
          Length = 216

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R S   +LT RE   L L   G +++EIAE+L +S  TV  ++ +   KL   +R QAI
Sbjct: 145 DRGSNEDSLTPRELDVLNLMVKGLSNKEIAEQLFISDKTVKIHVSNILKKLRVKSRSQAI 204

Query: 226 AKAIRFGYI 234
             AI+   +
Sbjct: 205 IYAIQHELV 213


>gi|320160955|ref|YP_004174179.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994808|dbj|BAJ63579.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 217

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 39/83 (46%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +          K +     L+ RE   L L  +G ++ EIAE+L +S  TV  +L S
Sbjct: 134 VVAEFARSPRPSSAKMAELTEPLSPREIEVLFLVAEGKSNREIAEQLVISEGTVKNHLSS 193

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A +R+QA+ +A   G +
Sbjct: 194 ILSKLGAKDRLQAVIRAREAGIL 216


>gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 211

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN-------L 174
           L   + G   +  + +        II  H                R +           L
Sbjct: 92  LPAMEAGADGYQLKEVQPDQLVASIIAVHQGNANFHPKVTPALLGRPAVKEEKKDSFSML 151

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L+    G +++EIA +L ++  TV  ++ +   KL+  +R QA   A++ G +
Sbjct: 152 TKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGVV 211


>gi|296282761|ref|ZP_06860759.1| regulatory protein, LuxR [Citromicrobium bathyomarinum JL354]
          Length = 252

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 83/249 (33%), Gaps = 22/249 (8%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN-------- 56
            L   + +   ++ P    +      R    Y +  A D   ++  + +  N        
Sbjct: 3   DLASVRITDQDDIRPAAEALHAVALERG---YRVAPAHDIADKRTPVDKDGNVLAMEVFG 59

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE---GGLL 113
           +  D                         P         T + ++    + L       +
Sbjct: 60  WAGDESAWWRNSRIALDSPITTACRFENEPYWVNEDGFRTRLPNAYLEKIDLTNFTKRAM 119

Query: 114 PFAGIAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITD---FLELFK 165
             A I  PV + F + G V F         L    E   +      +        +    
Sbjct: 120 TRAAIVVPVHMAFGRIGAVSFNPLDEDRIDLAADYEEYADLFAILSRAFISSYTVVMTSP 179

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +   A   L++RE  CL+ A  G T  EI+  +  S  TV  ++ +A++KL+AVNR Q +
Sbjct: 180 EPLPAGSRLSKREVECLRWAAIGKTDLEISMIMSRSRATVRFHMHNASIKLNAVNRSQTV 239

Query: 226 AKAIRFGYI 234
            KA + GYI
Sbjct: 240 FKAAQLGYI 248


>gi|300914706|ref|ZP_07132022.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X561]
 gi|307724060|ref|YP_003903811.1| LuxR family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320115614|ref|YP_004185773.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|300889641|gb|EFK84787.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X561]
 gi|307581121|gb|ADN54520.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X513]
 gi|319928705|gb|ADV79390.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 205

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                ++ +   + ++     ++LT RE   L+L   GY+++EIA+KL LS  TV  ++ 
Sbjct: 121 YIHPSLMEEIDNIDQETL--KKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVY 178

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KLD  +R QA   
Sbjct: 179 NIFKKLDVKDRTQAAIY 195


>gi|291301939|ref|YP_003513217.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571159|gb|ADD44124.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 + +    E      ++   LTERE   L L   G ++ EIA++L +S  TV  +
Sbjct: 135 LRRLLEKFVDRLPEPDGATPASLEVLTEREREVLILVAKGMSNTEIAKELTVSETTVKTH 194

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G    KL   +R+QA+  A   G +
Sbjct: 195 VGHVLTKLGVRDRVQAVVLAYETGLV 220


>gi|167037195|ref|YP_001664773.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040665|ref|YP_001663650.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter sp. X514]
 gi|166854905|gb|ABY93314.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X514]
 gi|166856029|gb|ABY94437.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
          Length = 208

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                ++ +   + ++     ++LT RE   L+L   GY+++EIA+KL LS  TV  ++ 
Sbjct: 124 YIHPSLMEEIDNIDQETL--KKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVY 181

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KLD  +R QA   
Sbjct: 182 NIFKKLDVKDRTQAAIY 198


>gi|269839470|ref|YP_003324162.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791200|gb|ACZ43340.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 188

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 139 LMLANEVIIEAHGACYQ----VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              + E +I A  A       V         +R      LT+RE   L L  DG  ++ I
Sbjct: 87  RDASVEEVIAAVRAVASGLSVVAPTLAARIVRREPEEVPLTQREVEVLALMADGLPNKAI 146

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +LG+S HTV  ++GS   KL A +R +A+A A R G +
Sbjct: 147 AARLGISEHTVKFHVGSILAKLGASSRAEAVAIAARKGLL 186


>gi|86356298|ref|YP_468190.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280400|gb|ABC89463.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 234

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD-IPNILIETYGDD 75
           L   L  + + + A ++ L   +                ++  D    I N L+ TY   
Sbjct: 31  LQSGLRALTDYVGASHYLLARCDL---IQESGLDFIVSSDWPFDLVRDIANDLVSTYARS 87

Query: 76  F-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             L        P  +  + E   +                    +    +G  +   +  
Sbjct: 88  TELEKCMQVFQP-NFALLPEGADVPEGAS-----------RQYCSLTFNVGRSRLALMFL 135

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             E  +L+ E + +       +   FL     +      LT+RE  CL    +G TS+EI
Sbjct: 136 FGEGFILSPERLRDVGLLAGYI-ASFLRCGGAKVDRDFELTDRELECLFWIAEGKTSDEI 194

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 195 AMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 234


>gi|229062451|ref|ZP_04199766.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228716840|gb|EEL68528.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 186

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL---ELFKKRSSAARNLTERE 178
           +R G         +S+ ++ A  ++++     +  +T  L       K  S    LTERE
Sbjct: 68  LRAGADGYLLKDSSSDQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKSESNENELTERE 127

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R   +
Sbjct: 128 KEILFELAKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQLV 183


>gi|57652103|ref|YP_186767.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751537|ref|YP_417278.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161005|ref|YP_494517.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195780|ref|YP_500589.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222034|ref|YP_001332856.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161510103|ref|YP_001575762.1| response regulator VraR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141457|ref|ZP_03565950.1| response regulator VraR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253734427|ref|ZP_04868592.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451050|ref|ZP_05699086.1| two-component system response regulator [Staphylococcus aureus
           A5948]
 gi|262050230|ref|ZP_06023081.1| two-component response regulator [Staphylococcus aureus D30]
 gi|262052884|ref|ZP_06025068.1| two-component response regulator [Staphylococcus aureus 930918-3]
 gi|282923220|ref|ZP_06330901.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9765]
 gi|284024930|ref|ZP_06379328.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294849429|ref|ZP_06790171.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9754]
 gi|304379068|ref|ZP_07361815.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|81694172|sp|Q5HEP0|VRAR_STAAC RecName: Full=Response regulator protein vraR
 gi|57286289|gb|AAW38383.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82657068|emb|CAI81505.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87126979|gb|ABD21493.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203338|gb|ABD31148.1| DNA-binding response regulator VraR, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150374834|dbj|BAF68094.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368912|gb|ABX29883.1| response regulator VraR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253727580|gb|EES96309.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861292|gb|EEV84104.1| two-component system response regulator [Staphylococcus aureus
           A5948]
 gi|259159238|gb|EEW44298.1| two-component response regulator [Staphylococcus aureus 930918-3]
 gi|259161692|gb|EEW46283.1| two-component response regulator [Staphylococcus aureus D30]
 gi|269941355|emb|CBI49752.1| response regulator VraR [Staphylococcus aureus subsp. aureus TW20]
 gi|282593131|gb|EFB98130.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9765]
 gi|294823566|gb|EFG39993.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9754]
 gi|298695222|gb|ADI98444.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300078692|gb|ADJ67243.1| VraR [Staphylococcus aureus]
 gi|300078695|gb|ADJ67245.1| VraR [Staphylococcus aureus]
 gi|300078698|gb|ADJ67247.1| VraR [Staphylococcus aureus]
 gi|302751756|gb|ADL65933.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342303|gb|EFM08195.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315196046|gb|EFU26406.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139738|gb|EFW31607.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142346|gb|EFW34160.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323439154|gb|EGA96882.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323441562|gb|EGA99212.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329728633|gb|EGG65063.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 209

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|330685558|gb|EGG97204.1| response regulator protein VraR [Staphylococcus epidermidis VCU121]
          Length = 209

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|306832892|ref|ZP_07466025.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424967|gb|EFM28100.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 214

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
               +     +LT RE   L+L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 138 AHDMQPELHDDLTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 197

Query: 223 QAIAKAIRFGYI 234
           QA+  A +   +
Sbjct: 198 QAVVYAFKHHLV 209


>gi|301059490|ref|ZP_07200403.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300446385|gb|EFK10237.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 225

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
             + V  + L   +K    R      LT RE   ++L  +G ++++I+++L +S  TV  
Sbjct: 132 VSHIVAKNLLAAEEKKGNARMPGYDTLTRREQEIMRLIAEGRSTKQISQQLFISQKTVEN 191

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   KLD  + ++ +  A ++G+I
Sbjct: 192 HRANIFSKLDIHSTMELVRFAAKYGFI 218


>gi|218437173|ref|YP_002375502.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218169901|gb|ACK68634.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 234

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT+RE   LQL  DGY++  IA++L ++V TV  ++ +   KL A +R QA  +A+R G
Sbjct: 172 SLTDRELEVLQLIVDGYSNAAIADQLFITVGTVKTHVRNILNKLCADDRTQAAVRALRAG 231

Query: 233 YI 234
            +
Sbjct: 232 LV 233


>gi|310659232|ref|YP_003936953.1| degu [Clostridium sticklandii DSM 519]
 gi|308826010|emb|CBH22048.1| DegU [Clostridium sticklandii]
          Length = 211

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            + +   S   +LT RE   L L  +G ++++I++ L +S  TV  ++ S   KLD  +R
Sbjct: 137 RVSRNIKSGVDSLTRREYEVLLLIAEGMSNKDISDHLVISEKTVKNHVSSILRKLDLQDR 196

Query: 222 IQAIAKAIRFGY 233
            QA   AI+   
Sbjct: 197 TQAAIFAIKQKL 208


>gi|270264144|ref|ZP_06192411.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041793|gb|EFA14890.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 247

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 14/189 (7%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
           +D  ++       + D  L   ++ + P +W                           G 
Sbjct: 51  MDWFELYTKSNFQFIDPVLITASNRITPFLWDENLI-IESGVKFSKLFDAAKYYNIVNGY 109

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKR-- 167
            F +    H    + F  +  +  N   +E               ++ITD+  +   R  
Sbjct: 110 TFVLHDHHHNLVVLSFFLDAPLSENRGKLEKNKNKIQMLLINTHEKLITDYQSVSSARYF 169

Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              +     ++RE   L LA  G +  EIA  LG+ + T+  ++G+A  KL   N   AI
Sbjct: 170 ERINDKEIFSDRENDVLYLASMGKSYPEIALILGVKLTTIKYHIGNAVKKLGVTNAKHAI 229

Query: 226 AKAIRFGYI 234
              +    I
Sbjct: 230 RLGVELQLI 238


>gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 215

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALLGRSAIKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Ames]
 gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Sterne]
 gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L]
 gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
 gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Ames]
 gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Sterne]
 gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L]
 gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
          Length = 209

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               K+ +    LT+RE   LQ    G +++EIA +L ++  TV  ++ +   KL+  +R
Sbjct: 137 RSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDR 196

Query: 222 IQAIAKAIRFG 232
            QA   A++ G
Sbjct: 197 TQAALYAVKHG 207


>gi|119509629|ref|ZP_01628775.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119465648|gb|EAW46539.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 238

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 41/65 (63%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           AA  LTERE   LQL  +G ++ +IAE+L ++V TV  ++ +   KL A +R QA  +A+
Sbjct: 173 AAYTLTERELEVLQLIVEGCSNADIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 232

Query: 230 RFGYI 234
           R G +
Sbjct: 233 RSGLV 237


>gi|57234205|ref|YP_181778.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224653|gb|AAW39710.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 232

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLE--LFKKRSSAARNL 174
           +R G         TSE L+ +    ++ H         + I  ++E             L
Sbjct: 94  LRAGARAYVLKDSTSEELVRSVREAVQGHRYLSSPLSEKAIEAYMEKSAEATSLDPYETL 153

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   G+T  EIAE+L +S  TV  +  +   KLD  N+ Q +  A++ G I
Sbjct: 154 TIREREVLHLVAQGHTCAEIAERLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|158317264|ref|YP_001509772.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112669|gb|ABW14866.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 250

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 157 ITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                   + R  A    LT RE   L+L  +G  + EIA KL +S +TV  ++ +   K
Sbjct: 169 FATMARGGEDRPRAHAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDK 228

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L   +R++A+  A+R G 
Sbjct: 229 LQLHSRMEAVMYAVRQGL 246


>gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 211

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A+++G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKYG 209


>gi|148655770|ref|YP_001275975.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148567880|gb|ABQ90025.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 254

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            D   L +        L++RE   L+    G ++ EIAE L +S  TV  ++ S   KL 
Sbjct: 157 QDLTNLPEVEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLS 216

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R QA+  A+R G+I
Sbjct: 217 LNDRTQAVLYALRRGWI 233


>gi|297243640|ref|ZP_06927571.1| response regulator of two-component system [Gardnerella vaginalis
           AMD]
 gi|296888391|gb|EFH27132.1| response regulator of two-component system [Gardnerella vaginalis
           AMD]
          Length = 260

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +SA   LT+RE   L     G +++EIA+KL +S+ TV  ++     K+DA +R+QA+ 
Sbjct: 191 ENSAIPELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVV 250

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 251 FAYENGLV 258


>gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 215

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALFGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 211

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +       KK+ +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALLGRSAAKKKKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|226359681|ref|YP_002777459.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226238166|dbj|BAH48514.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 219

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLE--LFKKRSSAARN----- 173
           L    +G+++  +    L + +   A G      +V    L   L    +          
Sbjct: 95  LRAGASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRRLLSRFLDDGPAPLRDPEVLDV 154

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   LQL   G ++ EIA +L LS  T+ +++G    KL+  +R+QA+  A   G 
Sbjct: 155 LTEREREVLQLVATGLSNTEIAAQLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGL 214

Query: 234 I 234
           +
Sbjct: 215 V 215


>gi|224552987|gb|ACN54744.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 59/182 (32%), Gaps = 4/182 (2%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           N + +  D+       + D  +      +    W++    +   +  ++          +
Sbjct: 28  NNNPEWFDVYLERKYQFIDPVIIRGLRCVEDYSWENKVILSEGYNLTRIFNESIQ-YNIY 86

Query: 116 AGIAFPVRLGFHKNGYVIFTS-EFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARN 173
            G  FP+    +    +   S +      E   E        +    L L+ + +     
Sbjct: 87  QGRTFPLHDYLNNLVLLSVISQKDSDFNIEKYREKFISFLTNLHQKTLNLYSQHNQKKNV 146

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+    G T  E++  L ++  TV  ++G+   KL   N   A+       
Sbjct: 147 FLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGAELQ 206

Query: 233 YI 234
            +
Sbjct: 207 LL 208


>gi|313624283|gb|EFR94330.1| sensory transduction protein LiaR [Listeria innocua FSL J1-023]
          Length = 212

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++       +K+     +LT RE   L L  +G +++EIA++L +++ TV  ++ +   
Sbjct: 132 KMMQRLTAKPEKKL--HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILS 189

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KLD  +R QA   A +   +
Sbjct: 190 KLDVQDRTQAAIYAFKHDLV 209


>gi|223694801|gb|ACN18083.1| two component transcriptional regulator [uncultured bacterium BLR5]
          Length = 215

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 39/63 (61%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            NLT RET  LQL  +G +++E+  +L +S  TV  ++ +   KL A +R QA++ A+R 
Sbjct: 150 ENLTSRETEVLQLISEGNSNKEVGNRLSISEETVKGHVKNILGKLGANDRTQAVSIAVRR 209

Query: 232 GYI 234
           G I
Sbjct: 210 GII 212


>gi|254994407|ref|ZP_05276597.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 187

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L  +G +++EIA++L +++ TV  ++ +   KLD  +R QA   A +
Sbjct: 121 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 180

Query: 231 FGYI 234
              +
Sbjct: 181 HDLV 184


>gi|229822851|ref|ZP_04448921.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271]
 gi|229787664|gb|EEP23778.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271]
          Length = 211

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L + R      LT RE   L+L G GY+++ IAE+L +++ TV  ++ +   KL+  +R
Sbjct: 137 RLDQARPKPHDELTNRELDVLRLIGQGYSNQAIAEELVITLKTVKTHVSNIFTKLEVEDR 196

Query: 222 IQAIAKAIRFGY 233
            QA   A+    
Sbjct: 197 TQAAIYAVHHHL 208


>gi|23100277|ref|NP_693744.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778509|dbj|BAC14778.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 210

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    LTERE   L L   G +++EIA +L +++ TV  ++ +   KL+  +R QA+  
Sbjct: 143 TALHEQLTEREKEILLLMAKGKSNQEIANELFIALKTVKVHVSNILGKLEVHDRTQAVIY 202

Query: 228 AIRFGYI 234
           A +   +
Sbjct: 203 AFQNKLV 209


>gi|256751296|ref|ZP_05492176.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749851|gb|EEU62875.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 205

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                ++ +   + ++     ++LT RE   L+L  +GY+++EIA+KL LS  TV  ++ 
Sbjct: 121 YIHPSLMEEIDNIDQETL--KKDLTPREIEILKLISNGYSNKEIAQKLFLSEKTVKNHVY 178

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KLD  +R QA   
Sbjct: 179 NIFKKLDVKDRTQAAIY 195


>gi|228908028|ref|ZP_04071877.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851625|gb|EEM96430.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 209

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 123 HPKVTPALMGRSTVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 182

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 183 SNVLAKLEVDDRTQAALYAVKHG 205


>gi|75906884|ref|YP_321180.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75700609|gb|ABA20285.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 239

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   LQL  +G ++  IAE+L ++V TV  ++ +   KL A +R QA  +A+R G 
Sbjct: 178 LTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 237

Query: 234 I 234
           +
Sbjct: 238 V 238


>gi|159899859|ref|YP_001546106.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892898|gb|ABX05978.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 461

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE   L+    G ++ EIA  L +S +TV  ++ +   KL  ++R +A  +A+R G
Sbjct: 6   PLSEREIEVLRQLALGASNNEIANTLVISPNTVKVHIRNIYAKLGVLSRAEATLEAVRRG 65

Query: 233 YI 234
            I
Sbjct: 66  LI 67


>gi|315283654|ref|ZP_07871783.1| transcriptional regulatory protein DegU [Listeria marthii FSL
           S4-120]
 gi|313612706|gb|EFR86719.1| transcriptional regulatory protein DegU [Listeria marthii FSL
           S4-120]
          Length = 69

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   K+   +R QA+  AI
Sbjct: 2   PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 61

Query: 230 RFGYI 234
           + G++
Sbjct: 62  KHGWV 66


>gi|218662896|ref|ZP_03518826.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 236

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 70/227 (30%), Gaps = 8/227 (3%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +    +  L  +       +  L    S  D   +   +    +         +    
Sbjct: 14  AGTRGLFAQALGRVATAFGLSHATLMHAPSPEDLLLKP--LLIESSLPPAYVRDFDRANM 71

Query: 71  TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
             G  F        +P+ W    + Q   +   +                          
Sbjct: 72  MRGCPFGLRLRESAVPLAWHLNDARQWSGLSRRTACPDAAPRDTGGRCHADQLQSTAAAL 131

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
              ++  T        +   + H              +   SA   L+ RE   ++    
Sbjct: 132 VFLFLRRTRRTRPERGQRAGDYHPPALDAYNTVRRNEE---SAHNALSARELEVVRWTAQ 188

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G TS EI + L LS HTVNAY+ +A  KLD VNR Q +AKAIR   I
Sbjct: 189 GKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 235


>gi|261407693|ref|YP_003243934.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261284156|gb|ACX66127.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 220

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 39/97 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L      ++  H        +      + ++    LT RE   LQL   G  + EI+E 
Sbjct: 124 ELHPDAAGLLMTHVTSPAGEDEANGSSHQEAAQLDKLTRREQEVLQLIASGMNNREISEA 183

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L ++  TV  ++     KL   +R QA   A++ G +
Sbjct: 184 LYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 220


>gi|324326299|gb|ADY21559.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 216

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE   L+    G +++EIA  L ++  TV  ++ +   KL+  +R QA   A++ G
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|323489900|ref|ZP_08095122.1| transcriptional regulatory protein degU (protease production
           enhancer protein) [Planococcus donghaensis MPA1U2]
 gi|323396407|gb|EGA89231.1| transcriptional regulatory protein degU (protease production
           enhancer protein) [Planococcus donghaensis MPA1U2]
          Length = 224

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 156 VITDFLELFKKRS----------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           ++ +F  L ++ +               LT+RE+  LQL  DG ++  I E L +S  TV
Sbjct: 133 LVMEFRRLSERENKGSFHQTEIRRPYHLLTKRESEVLQLLTDGQSNRVIGETLFISEKTV 192

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++ S   K+   +R QA+  AI+ G++
Sbjct: 193 KNHVSSILQKMQVNDRTQAVVTAIKNGWV 221


>gi|297537928|ref|YP_003673697.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297257275|gb|ADI29120.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 247

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 16/238 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           + S    L   L      +      ++ I S+ +     +       ++ +         
Sbjct: 9   RISQRTHLFNWLQGELQYLLGHEVMIFGIKSSENDTYHFEYFTSTRYFNDEQLSSVIEQE 68

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL-SVRLEGGLLPFAGIAFPVRLGFHK 128
                  +  +    LP+    +  +  IE       +     ++  + +   V  GF  
Sbjct: 69  TGLISQIIKIWRETTLPLF---VTNQENIEDFSHFSVINFNEDIVKKSELKNFVMHGFGD 125

Query: 129 NG-----YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-------SSAARNLTE 176
           N       VIF       +  +          +    + +   R       ++ A  +T+
Sbjct: 126 NHSKISSIVIFGRLHKFPSINLGNILELIMPHLHCALVRITSSRSNVVINTAAIANIMTK 185

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE+  LQ    G T+ EI+  L +S  TV  ++ +   KLD  NR QA  KA + G I
Sbjct: 186 RESEILQWLHMGKTNWEISSILDISQLTVKNHVQNILRKLDVQNRSQAAVKAAKLGLI 243


>gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALIGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELYITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|326391463|ref|ZP_08212998.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992489|gb|EGD50946.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 208

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++LT RE   L+L   GY+++EIA+KL LS  TV  ++ +   KLD  +R QA   
Sbjct: 143 KDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 198


>gi|311029481|ref|ZP_07707571.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 214

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                            +LT+RE   L   GDG T++EI+E+L + + TV  ++ +   K
Sbjct: 132 ASKMMNRFRSPSKLPHDDLTDRELEVLMCLGDGLTNQEISEELFIGIKTVKTHVSNILGK 191

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R QA   A R G +
Sbjct: 192 LQVADRTQAAIYANRHGVL 210


>gi|307266655|ref|ZP_07548184.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918318|gb|EFN48563.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 208

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++LT RE   L+L   GY+++EIA+KL LS  TV  ++ +   KLD  +R QA   
Sbjct: 143 KDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 198


>gi|289578700|ref|YP_003477327.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus
           Ab9]
 gi|297544934|ref|YP_003677236.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528413|gb|ADD02765.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter italicus Ab9]
 gi|296842709|gb|ADH61225.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 205

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++LT RE   L+L   GY+++EIA+KL LS  TV  ++ +   KLD  +R QA   
Sbjct: 140 KDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 195


>gi|219849670|ref|YP_002464103.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543929|gb|ACL25667.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 216

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEI 194
            ++     +       +V+ +F  L    +         LTERE   L     G ++ EI
Sbjct: 116 RIVTRGEALIQPSITRKVLAEFTRLAGGHTPVTSPLTEPLTEREMDVLHGIAAGKSNREI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L +S  TV  ++ S   KLD  +R QAI +A     I
Sbjct: 176 ADQLCISEGTVKNHVSSLLAKLDVRDRTQAIIRARELRLI 215


>gi|118477693|ref|YP_894844.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416918|gb|ABK85337.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 221

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               K+ +    LT+RE   LQ    G +++EIA +L ++  TV  ++ +   KL+  +R
Sbjct: 149 RSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDR 208

Query: 222 IQAIAKAIRFG 232
            QA   A++ G
Sbjct: 209 TQAALYAVKHG 219


>gi|256396518|ref|YP_003118082.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362744|gb|ACU76241.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 228

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 44/105 (41%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           NG         +LA  V     G   + +         R +  R LT RE    +L  +G
Sbjct: 119 NGVRTVARGESLLAPAVTRTLIGRFAERLRPGDPARAAREAVTRTLTPRELEVFELIAEG 178

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ EIA  L ++  TV  Y+     KLD  +R+QA+  A R G 
Sbjct: 179 LSNAEIAASLFITPETVKTYVSRILTKLDLRDRVQAVVLAYRIGL 223


>gi|229190347|ref|ZP_04317348.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228593131|gb|EEK50949.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
          Length = 209

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 123 HPKVTPALMGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 182

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 183 SNVLAKLEVDDRTQAALYAVKHG 205


>gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 209

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               K+ +    LT+RE   L+    G +++EIA +L ++  TV  ++ +   KL+  +R
Sbjct: 137 RSAVKKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDR 196

Query: 222 IQAIAKAIRFG 232
            QA   A++ G
Sbjct: 197 TQAALYAVKHG 207


>gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 213

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALMGRTAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|317154890|ref|YP_004122938.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945141|gb|ADU64192.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 220

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQL 184
           ++           +A   +        +V+   ++    + S       LT RE   L++
Sbjct: 104 ESAAGNLIRGLDAVARGELFLDDALSQEVVYKLMQAKDGQGSGRDPYTTLTAREQEVLRM 163

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G T+ E+A KL +S  TV  +  +   KL   + ++ I  A R G I
Sbjct: 164 LAEGMTAREVAAKLFISPKTVENHRTNLMKKLGLHSTVELIRYAARLGLI 213


>gi|163847185|ref|YP_001635229.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525026|ref|YP_002569497.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668474|gb|ABY34840.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448905|gb|ACM53171.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 246

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAE 196
           +V++E      ++++ F  L + +             L+ERE   L+    G +++EIA+
Sbjct: 135 DVLLEEPRVASRILSQFRNLPEVQMLVGDPSIQVFTPLSEREIEVLERIAAGNSNKEIAD 194

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LG+S  TV  ++ S   KL   +R QA+  A+R G+I
Sbjct: 195 ALGISTQTVKNHISSILRKLSLNDRTQAVIFALRRGWI 232


>gi|300863456|ref|ZP_07108411.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300338519|emb|CBN53553.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 244

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LTERE   ++L  +G ++EEI ++L +S+ TV  ++ +   KL   +R QA  +A+R
Sbjct: 180 ANPLTEREKEVIELIVEGCSNEEICKQLYISLGTVKTHVRNILNKLSCDDRTQAAVRALR 239

Query: 231 FGYI 234
            G +
Sbjct: 240 AGLV 243


>gi|163940056|ref|YP_001644940.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862253|gb|ABY43312.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 213

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|163848961|ref|YP_001637005.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526915|ref|YP_002571386.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163670250|gb|ABY36616.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450794|gb|ACM55060.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 209

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               ++   LE    +  AA  LTERE   L+L  +G T+ EIA +L +S  TV  ++ S
Sbjct: 128 LAPALMQRILEAQTSK--AADTLTEREREVLKLVAEGLTNAEIASRLTVSEETVKTHVAS 185

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R QA   A+R G +
Sbjct: 186 ILRKLGLAHRTQAAIYALRHGLV 208


>gi|328957201|ref|YP_004374587.1| two-component response regulator [YvqE] responding to cell wall
           stress [Carnobacterium sp. 17-4]
 gi|328673525|gb|AEB29571.1| two-component response regulator [YvqE] responding to cell wall
           stress [Carnobacterium sp. 17-4]
          Length = 210

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   G +++EIA+ L +++ TV  ++ +   KL+  +R QA   A +
Sbjct: 146 HEDLTNREQEILMLIAQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205

Query: 231 FGYI 234
              I
Sbjct: 206 HHLI 209


>gi|323702109|ref|ZP_08113777.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532991|gb|EGB22862.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 218

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +V+ +F  L            LTERE   L+    G ++++IA+ L +S  TV  +
Sbjct: 131 ALTAKVLAEFSRLTSVDHHDKKHSTLTERELEVLKQVAKGQSNKDIAKTLFISEKTVKNH 190

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +   K+   +R QA   AI+   +
Sbjct: 191 LTNIFQKIGVADRTQAALYAIKEKLV 216


>gi|255025548|ref|ZP_05297534.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J2-003]
          Length = 117

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   K+   +R QA+  AI
Sbjct: 50  PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 109

Query: 230 RFGYI 234
           + G++
Sbjct: 110 KHGWV 114


>gi|229167101|ref|ZP_04294844.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616335|gb|EEK73417.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 211

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|37223245|gb|AAQ90224.1| LuxR [Photobacterium leiognathi]
          Length = 197

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 9/187 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +++  L  +   I   +   Y           +  I  + NY        +       D 
Sbjct: 15  DINQCLSEMAKII---HCDYYLFAIIYPHSIIRPDISIIDNYPEKWRKYYDEAGLLEYDP 71

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + +  S   PI W  + E+  I+      ++         G +FP+    +  G + F 
Sbjct: 72  VVNYSKSHHSPINWN-VFEKKSIKKESPNVIKEAQASGLITGFSFPIHTANNGFGMLSFA 130

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYT 190
                +  + +         ++   L    ++ + A       LT+RET CL  A +G +
Sbjct: 131 HSDKDIYTDSLFLHANTNVPLMLPSLVDSYQKINTAHKKSDSILTKRETECLAWASEGKS 190

Query: 191 SEEIAEK 197
           + +I++ 
Sbjct: 191 TWDISKI 197


>gi|15924874|ref|NP_372408.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927458|ref|NP_374991.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283553|ref|NP_646641.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49484125|ref|YP_041349.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486702|ref|YP_043923.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|148268356|ref|YP_001247299.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394418|ref|YP_001317093.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980200|ref|YP_001442459.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253314946|ref|ZP_04838159.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253729642|ref|ZP_04863807.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|255006672|ref|ZP_05145273.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257426016|ref|ZP_05602438.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428689|ref|ZP_05605084.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431299|ref|ZP_05607675.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434017|ref|ZP_05610368.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436921|ref|ZP_05612963.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793762|ref|ZP_05642741.1| two-component system response regulator [Staphylococcus aureus
           A9781]
 gi|258408904|ref|ZP_05681186.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420992|ref|ZP_05683923.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422961|ref|ZP_05685860.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258430036|ref|ZP_05688406.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258443446|ref|ZP_05691788.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258445304|ref|ZP_05693495.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258447868|ref|ZP_05696002.1| response regulator protein vraR [Staphylococcus aureus A6224]
 gi|258453301|ref|ZP_05701286.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203536|ref|YP_003282805.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894549|ref|ZP_06302777.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8117]
 gi|282904515|ref|ZP_06312400.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906287|ref|ZP_06314139.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909203|ref|ZP_06317019.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911509|ref|ZP_06319309.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914681|ref|ZP_06322466.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282917229|ref|ZP_06324984.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282919718|ref|ZP_06327450.1| two component transcriptional regulator VraR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282925122|ref|ZP_06332782.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282928056|ref|ZP_06335663.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A10102]
 gi|283771033|ref|ZP_06343924.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus H19]
 gi|283958645|ref|ZP_06376091.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293507758|ref|ZP_06667600.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510776|ref|ZP_06669478.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus M809]
 gi|293539315|ref|ZP_06671994.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407262|ref|ZP_06817061.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8819]
 gi|295428465|ref|ZP_06821092.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275883|ref|ZP_06858390.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297208909|ref|ZP_06925314.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297246211|ref|ZP_06930062.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8796]
 gi|297590064|ref|ZP_06948704.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300913033|ref|ZP_07130471.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|81696298|sp|Q6G850|VRAR_STAAS RecName: Full=Response regulator protein vraR
 gi|81696461|sp|Q6GFH3|VRAR_STAAR RecName: Full=Response regulator protein vraR
 gi|81704309|sp|Q7A0I0|VRAR_STAAW RecName: Full=Response regulator protein vraR
 gi|81704831|sp|Q7A2Q1|VRAR_STAAM RecName: Full=Response regulator protein vraR
 gi|81705432|sp|Q7A4R9|VRAR_STAAN RecName: Full=Response regulator protein vraR
 gi|90116383|sp|P0C0Z1|VRAR_STAA1 RecName: Full=Response regulator protein vraR
 gi|9501772|dbj|BAB03325.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|13701677|dbj|BAB42970.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247656|dbj|BAB58046.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|16151628|dbj|BAB69827.1| response regulator [Staphylococcus aureus]
 gi|21204994|dbj|BAB95689.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49242254|emb|CAG40961.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49245145|emb|CAG43611.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147741425|gb|ABQ49723.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946870|gb|ABR52806.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722335|dbj|BAF78752.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253726638|gb|EES95367.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257271159|gb|EEV03316.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274333|gb|EEV05845.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277948|gb|EEV08604.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280943|gb|EEV11087.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283710|gb|EEV13835.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787734|gb|EEV26074.1| two-component system response regulator [Staphylococcus aureus
           A9781]
 gi|257840351|gb|EEV64813.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257842940|gb|EEV67358.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257846748|gb|EEV70763.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849630|gb|EEV73598.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257851331|gb|EEV75271.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257855822|gb|EEV78746.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257858800|gb|EEV81669.1| response regulator protein vraR [Staphylococcus aureus A6224]
 gi|257864509|gb|EEV87252.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075826|gb|ACY11799.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282313080|gb|EFB43478.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316356|gb|EFB46733.1| two component transcriptional regulator VraR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282318856|gb|EFB49211.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282321395|gb|EFB51721.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324518|gb|EFB54830.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326771|gb|EFB57068.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330484|gb|EFB60001.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590120|gb|EFB95201.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A10102]
 gi|282595071|gb|EFC00038.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763036|gb|EFC03168.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8117]
 gi|283459627|gb|EFC06718.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus H19]
 gi|283471154|emb|CAQ50365.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789685|gb|EFC28507.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817564|gb|ADC38051.1| Two component transcriptional regulator VraR, LuxR family
           [Staphylococcus aureus 04-02981]
 gi|290919850|gb|EFD96919.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094821|gb|EFE25089.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466407|gb|EFF08931.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus M809]
 gi|294967837|gb|EFG43867.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8819]
 gi|295127447|gb|EFG57086.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886470|gb|EFH25398.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297176918|gb|EFH36175.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8796]
 gi|297577192|gb|EFH95906.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300885811|gb|EFK81018.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302333549|gb|ADL23742.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312437651|gb|ADQ76722.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312830256|emb|CBX35098.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129309|gb|EFT85303.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315193411|gb|EFU23808.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS00]
 gi|329724817|gb|EGG61321.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 209

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|320011249|gb|ADW06099.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 230

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 33/231 (14%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +           R+          LD            G
Sbjct: 19  VDDHPMWRDAVARDLTESGFDVVATAGDGPGAVRRAHAAVPDVLVLDL--------NLPG 70

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++ S   L V +       A +   V+ G        
Sbjct: 71  MPGVQVCKE--------------LVGSQPGLRVLVLSASGEHADVLEAVKSGATGYLLKS 116

Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAAR------NLTERETSCL 182
            +++ L  A             G    V+ ++  L    + AA        LT+RET  L
Sbjct: 117 ASTQELTDAVRATAAGDPVFTPGLAGLVLGEYRRLASDPAPAAPDQPKVPQLTDRETEVL 176

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 177 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 227


>gi|253575856|ref|ZP_04853190.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844650|gb|EES72664.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 242

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G +++ I E L +S  TV  ++ S   K+D  +R QA+  AI+FG
Sbjct: 179 PLTRREAEVLRLMAEGRSNKMIGEHLFISEKTVKNHVSSILQKMDVDDRTQAVINAIKFG 238

Query: 233 YI 234
           ++
Sbjct: 239 WV 240


>gi|134299954|ref|YP_001113450.1| two component LuxR family transcriptional regulator
           [Desulfotomaculum reducens MI-1]
 gi|134052654|gb|ABO50625.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum reducens MI-1]
          Length = 218

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +V+ +F  L     S  +  NLTERE   L+    G +++ IA  L +S  TV  +L
Sbjct: 132 LTARVLAEFTRLSSGDYSEKKHLNLTEREIEVLKQVAKGQSNKAIANALYISEKTVKNHL 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   K+   +R QA   AI+   +
Sbjct: 192 TNIFQKIGVADRTQAALYAIKEKLV 216


>gi|111017172|ref|YP_700144.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816702|gb|ABG91986.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 219

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +       LTERE   LQL   G ++ EIA +L LS  T+ +++G    KL+  +R+QA+
Sbjct: 147 RDPEVLDVLTEREREVLQLVATGLSNTEIAGQLFLSESTIKSHVGRILTKLNVRDRVQAV 206

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 207 VLAYETGLV 215


>gi|28895408|ref|NP_801758.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50914724|ref|YP_060696.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10394]
 gi|71904035|ref|YP_280838.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|94988957|ref|YP_597058.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94990957|ref|YP_599057.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10270]
 gi|94992850|ref|YP_600949.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS2096]
 gi|94994837|ref|YP_602935.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10750]
 gi|28810654|dbj|BAC63591.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50903798|gb|AAT87513.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10394]
 gi|71803130|gb|AAX72483.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|94542465|gb|ABF32514.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94544465|gb|ABF34513.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10270]
 gi|94546358|gb|ABF36405.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS2096]
 gi|94548345|gb|ABF38391.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10750]
          Length = 215

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +       LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 139 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 198

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 199 QAVVYAFRHHLV 210


>gi|167578474|ref|ZP_02371348.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 296

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 78  LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 135

Query: 84  LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W     +         +    +R+       +G+ + + +   +      FT+  
Sbjct: 136 SMPVVWDLRQLARDHAARGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 195

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 196 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 254

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 255 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASSRGLI 296


>gi|52787183|ref|YP_093012.1| YvqC [Bacillus licheniformis ATCC 14580]
 gi|163119642|ref|YP_080588.2| two-component response regulator LiaR [Bacillus licheniformis ATCC
           14580]
 gi|319647713|ref|ZP_08001931.1| YvqC protein [Bacillus sp. BT1B_CT2]
 gi|52349685|gb|AAU42319.1| YvqC [Bacillus licheniformis ATCC 14580]
 gi|145903152|gb|AAU24950.2| two-component response regulator LiaR [Bacillus licheniformis ATCC
           14580]
 gi|317390054|gb|EFV70863.1| YvqC protein [Bacillus sp. BT1B_CT2]
          Length = 211

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L          ++LT RE   L+L  +G T++ IAE+L +++ TV  ++ +   KL+  +
Sbjct: 137 LRHSAGEQPLHQSLTARELEILKLVAEGKTNKGIAEELYITIKTVKTHVTNILSKLEVDD 196

Query: 221 RIQAIAKAIRFGYI 234
           R QA   A R   +
Sbjct: 197 RTQAAIYAHRNKLV 210


>gi|300866500|ref|ZP_07111190.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300335457|emb|CBN56350.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 241

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   GY++  IAEKL ++V TV  ++ +   KL A +R QA   A+R G
Sbjct: 179 PLTERELEVLELIVQGYSNAAIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVLALRSG 238

Query: 233 YI 234
            +
Sbjct: 239 LV 240


>gi|108805405|ref|YP_645342.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766648|gb|ABG05530.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 207

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 9/166 (5%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL--------GFHK 128
           +    SGL P     +  E       ++  RL G   P   + F                
Sbjct: 41  VLRLASGLRP-DVVLLDLEMPGTGGVEVLRRLRGLDDPPKVVVFTAYDDERLLEALREGA 99

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G ++  +    + + V     G           + K+    +  LT RE   L+L   G
Sbjct: 100 RGCLLKGASRTEIFDAVRTVHAGGSVIPPEITARVLKEMRGESEPLTPRELEVLRLVARG 159

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+ E+A  L +S  TV  ++ S   KL A NR QA+A A   G +
Sbjct: 160 LTNREVARALFISERTVKFHVSSLLAKLRAENRTQAVAIARERGLL 205


>gi|16800090|ref|NP_470358.1| hypothetical protein lin1021 [Listeria innocua Clip11262]
 gi|16413480|emb|CAC96252.1| lin1021 [Listeria innocua Clip11262]
 gi|313609539|gb|EFR85084.1| sensory transduction protein LiaR [Listeria monocytogenes FSL
           F2-208]
 gi|313619559|gb|EFR91226.1| sensory transduction protein LiaR [Listeria innocua FSL S4-378]
          Length = 212

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L  +G +++EIA++L +++ TV  ++ +   KLD  +R QA   A +
Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205

Query: 231 FGYI 234
              +
Sbjct: 206 HDLV 209


>gi|325290865|ref|YP_004267046.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966266|gb|ADY57045.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 212

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE   +QL   G ++++I EKL ++  TV  +L +   KL   NR+Q +A A + G
Sbjct: 149 KLSEREKEVVQLVSQGLSNKDIGEKLHITESTVKNHLRNILAKLHLRNRVQLVAFAYKNG 208


>gi|229012624|ref|ZP_04169797.1| Response regulator receiver [Bacillus mycoides DSM 2048]
 gi|228748647|gb|EEL98499.1| Response regulator receiver [Bacillus mycoides DSM 2048]
          Length = 215

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+RE   LQL   G  + EIA+ L +S  TV  ++ +   KLD  +R QA   AIR
Sbjct: 151 TETLTKREIDVLQLLAYGKQNHEIAKILYVSEGTVKTHIHNILQKLDVTDRTQAAVMAIR 210

Query: 231 FGYI 234
              +
Sbjct: 211 KKIV 214


>gi|158317584|ref|YP_001510092.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112989|gb|ABW15186.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 237

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT+RE   L+L   G  + +IA++L +S +TV  ++ +   KL   +R++
Sbjct: 164 DDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRME 223

Query: 224 AIAKAIRFGYI 234
           A+  A+R   +
Sbjct: 224 AVVYAVREKLL 234


>gi|19746547|ref|NP_607683.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21910902|ref|NP_665170.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|56808638|ref|ZP_00366364.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Streptococcus pyogenes
           M49 591]
 gi|209559762|ref|YP_002286234.1| Putative two-component response regulator [Streptococcus pyogenes
           NZ131]
 gi|306826950|ref|ZP_07460250.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
 gi|19748758|gb|AAL98182.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS8232]
 gi|21905108|gb|AAM79973.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|209540963|gb|ACI61539.1| Putative two-component response regulator [Streptococcus pyogenes
           NZ131]
 gi|304430968|gb|EFM33977.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 213

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +       LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 137 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 196

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 197 QAVVYAFRHHLV 208


>gi|315302505|ref|ZP_07873346.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596]
 gi|313629123|gb|EFR97415.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596]
          Length = 212

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L  +G +++EIA++L +++ TV  ++ +   KLD  +R QA   A +
Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205

Query: 231 FGYI 234
              +
Sbjct: 206 HDLV 209


>gi|239638058|ref|ZP_04679017.1| response regulator protein VraR [Staphylococcus warneri L37603]
 gi|239596341|gb|EEQ78879.1| response regulator protein VraR [Staphylococcus warneri L37603]
          Length = 209

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180
           L    + Y++ T+    +A  V    HG      +V+       KKR+     LT+RE  
Sbjct: 95  LDAGVDSYILKTTSASDIAEAVRKTYHGESVFEPEVLVKMRNRMKKRAELYEMLTDREME 154

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L   GY+++EIA    +++ TV  ++ +   KL+  +R QA+  A +   I
Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|289434290|ref|YP_003464162.1| DNA-binding response regulator, LuxR family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170534|emb|CBH27074.1| DNA-binding response regulator, LuxR family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313633930|gb|EFS00643.1| sensory transduction protein LiaR [Listeria seeligeri FSL N1-067]
 gi|313638502|gb|EFS03673.1| sensory transduction protein LiaR [Listeria seeligeri FSL S4-171]
          Length = 212

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L  +G +++EIA++L +++ TV  ++ +   KLD  +R QA   A +
Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205

Query: 231 FGYI 234
              +
Sbjct: 206 HDLV 209


>gi|228476314|ref|ZP_04061015.1| response regulator protein VraR [Staphylococcus hominis SK119]
 gi|314936061|ref|ZP_07843410.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269597|gb|EEK11103.1| response regulator protein VraR [Staphylococcus hominis SK119]
 gi|313655878|gb|EFS19621.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 209

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KK++     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKKAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|157693715|ref|YP_001488177.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194015458|ref|ZP_03054074.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|157682473|gb|ABV63617.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194012862|gb|EDW22428.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 211

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + + L      S     LT RE   L+L  DG +++ IAE+L +++ TV  ++ +   KL
Sbjct: 133 VMNKLRHSSNGSILHDALTAREMEILKLIADGKSNKVIAEELFITIKTVKTHITNILSKL 192

Query: 217 DAVNRIQAIAKAIRFGYI 234
           D  +R QA   A R   I
Sbjct: 193 DVEDRTQAAVYAHRHKLI 210


>gi|51892061|ref|YP_074752.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855750|dbj|BAD39908.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 218

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + L+ RE   L+LA  G T +EIA KL ++  TV  ++     KL   NR +A+  AI
Sbjct: 147 PGQQLSPREIEVLRLASTGLTYKEIAAKLYVAESTVKNHMRHILEKLHLRNRSEAVGYAI 206

Query: 230 RFGY 233
           R G 
Sbjct: 207 RTGL 210


>gi|226312803|ref|YP_002772697.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095751|dbj|BAH44193.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 228

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 20/115 (17%)

Query: 140 MLANEVIIEAHGACYQ------------VITDFLELFKKRSSAA--------RNLTERET 179
              ++ +++     +Q             + + L+  ++   +           LT+RE 
Sbjct: 113 DADSQEMLDLIRRAHQGEALFHTVTAAKALAEALQGQRETPDSTTTSQSVLLDELTDREL 172

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LQ   DGY +++IA+ L +S  TV  ++     K+   +R QA+AKA+R   +
Sbjct: 173 DVLQQIADGYRNDQIAQNLFISEGTVKTHVHRILQKMGVEDRTQAVAKALRHKIV 227


>gi|218134363|ref|ZP_03463167.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989748|gb|EEC55759.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC
           43243]
          Length = 218

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+L  +G  + EIA +L +S  TV  ++ +   K++  +R QA   AI+   
Sbjct: 155 LTKRELQVLKLIANGMFNREIAVQLKISERTVKNHISNIFRKINVSDRTQAAVFAIKNKI 214

Query: 234 I 234
           +
Sbjct: 215 V 215


>gi|254390766|ref|ZP_05005978.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294815206|ref|ZP_06773849.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326443564|ref|ZP_08218298.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197704465|gb|EDY50277.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327805|gb|EFG09448.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 328

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 74/227 (32%), Gaps = 14/227 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L  +  RL  +   ++        ++      + Q  +      D  +      
Sbjct: 116 AERLVGLDAIQSRLEALTEELRGE-----CLSIMPGGAQSQASLDASRPLDEKAMARGVE 170

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +   Y D       +    + +     E   +      +     +        P+     
Sbjct: 171 MCALYQDSV----RNDSATLAYAQWTTEHGGQVRTSPVLPPRLLIFDRETAVVPIDPANS 226

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           + G +   S  ++ A   + E        +         + +    +T  E   L+L   
Sbjct: 227 RLGALCTRSPGIVAALVTLFEQTWQAAVPLGAI-----PQQAPRDGITPGEQELLKLLAS 281

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T E   ++LGLS+ TV   + S   +L+A +R +A  KA + G++
Sbjct: 282 GMTDEAAGKRLGLSLRTVRRQMSSLMERLNATSRFEAGLKAAQRGWL 328


>gi|116872424|ref|YP_849205.1| LuxR family DNA-binding response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741302|emb|CAK20424.1| DNA-binding response regulator; LuxR family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 212

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L  +G +++EIA++L +++ TV  ++ +   KLD  +R QA   A +
Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205

Query: 231 FGYI 234
              +
Sbjct: 206 HDLV 209


>gi|16803062|ref|NP_464547.1| hypothetical protein lmo1022 [Listeria monocytogenes EGD-e]
 gi|46907254|ref|YP_013643.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47096354|ref|ZP_00233950.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217964878|ref|YP_002350556.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|224500732|ref|ZP_03669081.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes Finland 1988]
 gi|224502663|ref|ZP_03670970.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes FSL R2-561]
 gi|226223640|ref|YP_002757747.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254823705|ref|ZP_05228706.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254832231|ref|ZP_05236886.1| two-component response regulator [Listeria monocytogenes 10403S]
 gi|254852518|ref|ZP_05241866.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254898804|ref|ZP_05258728.1| two-component response regulator [Listeria monocytogenes J0161]
 gi|254911707|ref|ZP_05261719.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254931406|ref|ZP_05264765.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|254936033|ref|ZP_05267730.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255520598|ref|ZP_05387835.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|290893828|ref|ZP_06556807.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|300764232|ref|ZP_07074227.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|315281752|ref|ZP_07870312.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120]
 gi|16410424|emb|CAC99100.1| lmo1022 [Listeria monocytogenes EGD-e]
 gi|46880521|gb|AAT03820.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47015312|gb|EAL06249.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217334148|gb|ACK39942.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|225876102|emb|CAS04808.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605826|gb|EEW18434.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|258608621|gb|EEW21229.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|290556655|gb|EFD90190.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|293582956|gb|EFF94988.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293589656|gb|EFF97990.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|293592927|gb|EFG00688.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300515222|gb|EFK42274.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|307570563|emb|CAR83742.1| DNA-binding response regulator, LuxR family [Listeria monocytogenes
           L99]
 gi|313614594|gb|EFR88178.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120]
 gi|328466914|gb|EGF38023.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328475371|gb|EGF46144.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332311431|gb|EGJ24526.1| Transcriptional regulatory protein [Listeria monocytogenes str.
           Scott A]
          Length = 212

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L  +G +++EIA++L +++ TV  ++ +   KLD  +R QA   A +
Sbjct: 146 HDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFK 205

Query: 231 FGYI 234
              +
Sbjct: 206 HDLV 209


>gi|322383770|ref|ZP_08057521.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151982|gb|EFX44925.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 213

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           E +  A++ I E +      +T  L   +        LT RE   L L  DG T+++IAE
Sbjct: 113 EGIHKASQGIPEMNPEVSLALTRGLR-QRNAQPDEEGLTIREKEVLLLIADGKTNKDIAE 171

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L +S+ TV  ++ +  +K +  +R Q    A R G++
Sbjct: 172 ELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGWV 209


>gi|251798752|ref|YP_003013483.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546378|gb|ACT03397.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 221

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 142 ANEVIIEAHGAC----------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           A E+I   HGA            Q +T  L     +S     LTERE   L L  +G ++
Sbjct: 117 AEELIYALHGAVKGMPVMTADVSQALTRGLRQRTAQSG-DEELTEREKEVLLLIAEGRSN 175

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EI E+L +SV TV  ++ +  +K +  +R Q    A R G++
Sbjct: 176 KEIGEELHISVKTVKTHVSNLLMKCELEDRTQLAVLAHRKGWV 218


>gi|139473330|ref|YP_001128045.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|134271576|emb|CAM29801.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
          Length = 213

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +       LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 137 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 196

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 197 QAVVYAFRHHLV 208


>gi|229133094|ref|ZP_04261931.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228650370|gb|EEL06368.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 211

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|196250317|ref|ZP_03149010.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|196210206|gb|EDY04972.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
          Length = 552

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 17/174 (9%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
            I   +   Y +D L H+   +  +    +     +     + V             F V
Sbjct: 379 AISAEMASCYQEDVLRHYGRSIKQVAKSQVPSLRQVGDKTVMEVP------------FFV 426

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTER 177
           R G++    V           EV + A  A   ++ +                +  LT R
Sbjct: 427 RDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSR 486

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L+L   G ++ EI+E+L +SVHTV  ++ +   K+   +R Q IA   + 
Sbjct: 487 EMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 540


>gi|167628890|ref|YP_001679389.1| transcriptional regulator, luxr family, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591630|gb|ABZ83378.1| transcriptional regulator, luxr family, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 214

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
               +  + +   LTERE   L L   G T+ +IA  L +S  TV  ++ +   KL   +
Sbjct: 139 RRFNRTVAHSGDELTEREKEVLGLIAQGSTNADIASALFISEKTVKNHITNIFRKLQVKD 198

Query: 221 RIQAIAKAIRFGYI 234
           R QA   AI+   +
Sbjct: 199 RTQAALYAIKNRLV 212


>gi|138894013|ref|YP_001124466.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|134265526|gb|ABO65721.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
          Length = 531

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 17/174 (9%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
            I   +   Y +D L H+   +  +    +     +     + V             F V
Sbjct: 358 AISAEMASCYQEDVLRHYGRSIKQVAKSQVPSLRQVGDKTVMEVP------------FFV 405

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTER 177
           R G++    V           EV + A  A   ++ +                +  LT R
Sbjct: 406 RDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSR 465

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L+L   G ++ EI+E+L +SVHTV  ++ +   K+   +R Q IA   + 
Sbjct: 466 EMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 519


>gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 213

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|288553881|ref|YP_003425816.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288545041|gb|ADC48924.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 211

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 138 FLMLANEVIIEAHG--------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                 E I   H             V+T       +  +  + LT+RE   L     G 
Sbjct: 107 DPEELAETIRALHAGESKVHSKVMKYVLTRISHKEDEEEAKVKRLTKREKEVLIELAKGR 166

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +++E+A+ L +   TV  ++ +   KL+  +R QA   A+R G 
Sbjct: 167 SNKELADVLHIKEKTVKTHISNILSKLELSDRTQAALFAMRMGI 210


>gi|256785092|ref|ZP_05523523.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289768986|ref|ZP_06528364.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289699185|gb|EFD66614.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181
               GY++  +    L   V   A G               +   ++  A  L+ RE   
Sbjct: 111 AGATGYLLKDAPRDDLFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEPLSAREREV 170

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G +++EIA +L +S  TV  +L     KL   +R  A+A A   G +
Sbjct: 171 LALVARGTSNKEIARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223


>gi|152032258|gb|ABS28971.1| acyl-homoserine lactone transcriptional regulator [Burkholderia
           vietnamiensis]
          Length = 154

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 13/158 (8%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           NY     +          D  + H  S + P+IW++  +   ++          G     
Sbjct: 1   NYPQTWVERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEAGQHGLR 55

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRS 168
            G   P        G +        +    + E               ++  L L +   
Sbjct: 56  HGWCMPSVSRTGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVP 114

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                LT RE   LQ +  G T  EI + + +   T  
Sbjct: 115 EYTVELTVREREALQWSAAGKTYAEIGKIMHVDDRTXK 152


>gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 213

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALMGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|50955380|ref|YP_062668.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951862|gb|AAT89563.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 207

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 47/112 (41%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
            L    +GY++  S  + L   +     G           L  +  +   +LT RE   L
Sbjct: 94  SLDAGASGYLLKDSTPVELFAAIRTARDGGSALSPAVASRLMDRMRAPQESLTPREIEVL 153

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   G T+ ++ E+L +S  TV  ++     KL    R  A+++A++ G I
Sbjct: 154 ALLATGRTNRQVGERLFVSETTVKTHVNHIFTKLGVDTRAAAVSRAMKEGLI 205


>gi|75909280|ref|YP_323576.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75703005|gb|ABA22681.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 209

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERET 179
           L     G ++ TS    +   +   A G    +  D LE F  R    ++  ++LT RE 
Sbjct: 94  LRSGVRGILLDTSTESEILTAIEAIALGL-IVIHPDVLEFFSVREKAVTNPVQSLTPREI 152

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LQ+ G G  ++ IA+ L +S HTV  ++ S   KL    R +A+   +R G I
Sbjct: 153 EVLQMLGSGLGNKAIAQSLHISDHTVKFHVSSIFQKLAVSTRTEAVTVGVRLGLI 207


>gi|21223813|ref|NP_629592.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7105984|emb|CAB76009.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 224

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181
               GY++  +    L   V   A G               +   ++  A  L+ RE   
Sbjct: 111 AGATGYLLKDAPRDDLFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEPLSAREREV 170

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G +++EIA +L +S  TV  +L     KL   +R  A+A A   G +
Sbjct: 171 LALVARGTSNKEIARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223


>gi|330684760|gb|EGG96455.1| putative response regulator protein VraR [Staphylococcus
           epidermidis VCU121]
          Length = 207

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RET  L+    G T++EIA  L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|311067417|ref|YP_003972340.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310867934|gb|ADP31409.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 215

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 34/83 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V+T      +        LT RE   L     G +++EIA  L +S  TV  ++ 
Sbjct: 127 AIMPHVLTHMRTQHEPEKEKYYQLTRREKDVLMEIASGKSNKEIAASLFISEKTVKTHVS 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KLD  +R QA   A++   
Sbjct: 187 NLLAKLDVADRTQAALFAVKHHL 209


>gi|310639866|ref|YP_003944624.1| transcriptional regulatory protein degu (protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
 gi|309244816|gb|ADO54383.1| Transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
          Length = 217

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +    +L+ERE   L     GY ++EIAE L +SV TV ++  +   KL+   R + 
Sbjct: 145 EGIAGPYESLSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLNLKTRPEL 204

Query: 225 IAKAIRFGYI 234
           +  A++ G +
Sbjct: 205 VKFALKKGLL 214


>gi|239637871|ref|ZP_04678832.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri
           L37603]
 gi|239596434|gb|EEQ78970.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri
           L37603]
          Length = 207

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RET  L+    G T++EIA  L +S  T+  ++     KL   +R QA   A+   
Sbjct: 146 KLSKRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 233 YI 234
            I
Sbjct: 206 LI 207


>gi|156744143|ref|YP_001434272.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235471|gb|ABU60254.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 213

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182
                GY++  ++   L   +   A G           L +   +      LTERET  L
Sbjct: 96  RAGAMGYLLKDTQAEELRRAIKAAAAGQVQLSPRAAARLMRDVRAPESPEKLTERETDVL 155

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L   G  ++EIA +L +   TV  ++ +   KLD  +R QA   A+R G +
Sbjct: 156 RLLALGRANKEIARELNIGEKTVKTHVSAILRKLDVPSRTQAALYAVRIGLV 207


>gi|25029338|ref|NP_739392.1| putative two-component response regulator [Corynebacterium
           efficiens YS-314]
 gi|23494626|dbj|BAC19592.1| putative two-component response regulator [Corynebacterium
           efficiens YS-314]
          Length = 225

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 43/109 (39%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   A G           L  +  +   +LT RE   L+L 
Sbjct: 117 AGALGYLLKDAPPNELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 176

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EI   L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 177 AGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGLL 225


>gi|228939396|ref|ZP_04101986.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972275|ref|ZP_04132888.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978889|ref|ZP_04139256.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228780846|gb|EEM29057.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787459|gb|EEM35425.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820291|gb|EEM66326.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 209

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K+  +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 123 HPKVTPALMGRTAVKKEIENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 182

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 183 SNVLAKLEVDDRTQAALYAVKHG 205


>gi|239825932|ref|YP_002948556.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239806225|gb|ACS23290.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70]
          Length = 556

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITD----FLELFKK 166
                 I+F V    H    V           EV +    G    V+        +    
Sbjct: 421 FGTVMEISFSVHEHVHGVMAVHLKDIEAAKEAEVYVAALIGIGTMVMKQNTYQTPKQELN 480

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               +  LT RE   L L   G ++ EIA++L +S+HTV  ++ +   K+   +R Q IA
Sbjct: 481 IDMLSERLTTREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIA 540

Query: 227 KAIRF 231
              + 
Sbjct: 541 LVYQL 545


>gi|322506324|gb|ADX01778.1| ER transcriptional regulator [Acinetobacter baumannii 1656-2]
          Length = 197

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 41/164 (25%), Gaps = 9/164 (5%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
             F              +     L+NY                D  + H    L P++W 
Sbjct: 32  LGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMVSLQPLVWS 91

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-- 148
           S   +T  E                 G A   R      G +        L+ +      
Sbjct: 92  SQSAKTQAEKD---FWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148

Query: 149 --AHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDG 188
              +     V +   ++      A  N  LT RE   L+   +G
Sbjct: 149 TNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEG 192


>gi|126661670|ref|ZP_01732679.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
 gi|126617044|gb|EAZ87904.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
          Length = 201

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G  + +IAEKL ++V TV  ++ +   KL   +R QA  +A+R G
Sbjct: 139 PLTERELDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRSG 198

Query: 233 YI 234
            +
Sbjct: 199 LV 200


>gi|329948078|ref|ZP_08294979.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523217|gb|EGF50318.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 244

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 4/134 (2%)

Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
             +         AG +  +    R            S   +++  V           + +
Sbjct: 109 FDLDEYAFAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRVTQRMLEMFAPSLPN 168

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                +       +LT RE   L L   G ++ EIA+ L +S  TV  ++G+   KLD  
Sbjct: 169 SGAPTQASDPRIDSLTPREKEILVLMSQGLSNAEIADHLVVSATTVKTHVGNVLAKLDVR 228

Query: 220 NRIQAIAKAIRFGY 233
           +R+QA+  A   G 
Sbjct: 229 DRVQAVVVAYETGL 242


>gi|297195179|ref|ZP_06912577.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722161|gb|EDY66069.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 214

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178
           +R G     Y     + L  A   +   H    Q I   L         +    +LTERE
Sbjct: 98  LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQQEIAGALLSDGDPGNGTGRGNSLTERE 157

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGM 212


>gi|154685393|ref|YP_001420554.1| YhcZ [Bacillus amyloliquefaciens FZB42]
 gi|154351244|gb|ABS73323.1| YhcZ [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             LT RE   LQ    G +++EIA  L +S  TV  ++ +   KL+  +R QA   A++
Sbjct: 147 DQLTPREKDVLQEIAKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVK 205


>gi|147677779|ref|YP_001211994.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146273876|dbj|BAF59625.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 217

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 154 YQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
            +V  +F  L    S  +  L  T RE   L+L   G ++  IA+KL +S  TV  +L S
Sbjct: 133 AKVFAEFTRLSTISSRYSHPLGLTRREVDVLRLVAQGDSNRSIAQKLFISEKTVKNHLTS 192

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R QA   A++   I
Sbjct: 193 IFQKLGVDDRTQAALHAVKNKII 215


>gi|145594985|ref|YP_001159282.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145304322|gb|ABP54904.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 220

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 149 AHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           A     +V    +  +  R   A        LT RE   L+L  DG ++ EIA  L +S 
Sbjct: 127 AALLAPEVTRQLVGRYAARIRPAEGSSGDIPLTPRELEVLRLIADGLSNSEIAATLVISQ 186

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+     KLD  +R+QA+  A R G +
Sbjct: 187 ETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218


>gi|17229196|ref|NP_485744.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135524|dbj|BAB78070.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 239

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   LQL  +G ++  IAE+L ++V TV  ++ +   KL A +R QA  +A+R G 
Sbjct: 178 LTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 237

Query: 234 I 234
           +
Sbjct: 238 V 238


>gi|220909912|ref|YP_002485223.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866523|gb|ACL46862.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 245

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+RE   L+L   G+++ EIA KL ++V TV  ++ +   KL A +R QA   A+R
Sbjct: 181 ADPLTQRELEVLELIVKGHSNAEIASKLYITVGTVKTHVRNILNKLCADDRTQAAVLALR 240

Query: 231 FGYI 234
            G +
Sbjct: 241 SGLV 244


>gi|42781357|ref|NP_978604.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42737279|gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 211

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+    G +++EIA  L ++  TV  ++ +   KL+  +R QA   A+++G 
Sbjct: 151 LTKREQEVLREIAQGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYGV 210

Query: 234 I 234
           I
Sbjct: 211 I 211


>gi|229164821|ref|ZP_04292645.1| Response regulator receiver [Bacillus cereus R309803]
 gi|228618645|gb|EEK75647.1| Response regulator receiver [Bacillus cereus R309803]
          Length = 221

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 153 CYQVITDFLE----LFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                  FL+      +  ++   A  LT+RE   LQL   G  + EIA+ L +S  TV 
Sbjct: 133 ANHAFAQFLKYDNVPEEDSTANEYAEALTKREIDVLQLLAYGKQNHEIAKILCVSEGTVK 192

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++     KL+  +R QA   AIR   +
Sbjct: 193 THIHKILQKLEVTDRTQAAVMAIRQKIV 220


>gi|307328232|ref|ZP_07607410.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886066|gb|EFN17074.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194
               +     +++       V T    +           LT RE   L+L  +G ++ EI
Sbjct: 119 GIRTVATGAALLDPEVTRQLVGTYAARIRPAEGPPRDIPLTPRELEVLRLIANGLSNSEI 178

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  L +S  TV  ++     KL   +R+QA+  A R G +
Sbjct: 179 AATLVISQETVKTFVSRILAKLGLRDRVQAVVYAYRQGLV 218


>gi|254292885|ref|YP_003058908.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041416|gb|ACT58211.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC
           49814]
          Length = 249

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 12/237 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + + S +E++  +          +F  +     L+F R    +  +     D  +     
Sbjct: 14  QSAKSQEEITKAIQGFVENKGFWSFN-FGYLDTLNFSRADAPLKFISTMSDDWAEHYMNE 72

Query: 69  IETYGDDFLFHFN-SGLLPIIWQSIQEE--TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                D  +         PI+     ++   V+ S  +  +R         G   P+   
Sbjct: 73  KYEEVDFAVRELRKERPTPILVGYELQKKMQVLTSDEEKYLRDAAEANWQNGCVIPLGSL 132

Query: 126 FHKN---GYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELF-KKRSSAARNLTER 177
              N     +   SE        + EA           +   L         +   LT+R
Sbjct: 133 PMDNKPPAGIGVASELREKEFLKVWEAGASEILVFMNFMNQVLSQSIADLLYSIEPLTDR 192

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E  CL     G   + I ++L ++  TVN ++ +A  KL A     A+AKAIR  +I
Sbjct: 193 ERDCLAFLARGLRPDRIGDELSIATVTVNMHIRNARYKLKATTNAHAVAKAIRLNFI 249


>gi|146276004|ref|YP_001166164.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
 gi|145322695|gb|ABP64638.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
          Length = 248

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 68/231 (29%), Gaps = 16/231 (6%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFP------RRQQLICELHNYDLDSGDIPNILIETY 72
             +  +Q    A         + L  P        +        +     +         
Sbjct: 14  ALVAEVQAAGDAAGLPFIAAQADLGDPEPMSDEDGRPYAETTFRWTDPGHEYWRDRKLAL 73

Query: 73  GDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
              FL        P  + +             G     +       A +A PV L     
Sbjct: 74  HVPFLTAARLVAEPFFYTAGTLATWRPSGLLGGVDCSGVAKSFGGEAIVA-PVHLPRGIV 132

Query: 130 GYVIFTSEFLMLANE------VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           G V++ S   +   +         +A         +      + +   + LT RE  CL+
Sbjct: 133 GAVVWCSREPIGVAQVFAGKAEHFQALALRLVATHNEARGRPRNAGVPQKLTRREVQCLR 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A  G T  EI   L LS  TV  +L +A  KL A  R Q+I  A   GY+
Sbjct: 193 WAAAGKTDGEIGIILDLSHSTVRFHLRNAAEKLGATGRAQSIQLAAGLGYV 243


>gi|23099565|ref|NP_693031.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22777795|dbj|BAC14066.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 74

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + LT+RE    +L     T++EIA++L +S  TV  ++ +A  KL    R QA+ + +
Sbjct: 8   PKQLLTKREKEVFELLVQDKTTKEIAQELFISEKTVRNHISNAMQKLGVKGRSQAVVELL 67

Query: 230 RFG 232
           R G
Sbjct: 68  RMG 70


>gi|313636331|gb|EFS02121.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL
           S4-171]
          Length = 228

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   K+   +R QA+  AI
Sbjct: 161 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 220

Query: 230 RFGYI 234
           + G++
Sbjct: 221 KHGWV 225


>gi|260426159|ref|ZP_05780138.1| autoinducer-binding transcriptional regulator, LuxR family
           [Citreicella sp. SE45]
 gi|260420651|gb|EEX13902.1| autoinducer-binding transcriptional regulator, LuxR family
           [Citreicella sp. SE45]
          Length = 255

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 12/229 (5%)

Query: 11  SSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNIL 68
           + +++EL    L  +                              L N+  D  D+    
Sbjct: 17  AGTVEELWQMHLERMA-GYGFDRLLYGFTRYRTTTSLGDPNDFVLLTNHSTDYTDVFIGQ 75

Query: 69  IETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFP---V 122
              +    +           W+    +  +  + ++ +  +    G    AG +     V
Sbjct: 76  GLYHHAPMVNWALEHEGACSWRVLAEMLAQGNVGNAERRVIDFNLGKNVRAGYSVSFKSV 135

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERET 179
                    +   +       + + + HG    ++ + L L           ++LT+R+ 
Sbjct: 136 SSRAKGAIALTAKAGTEQADVDAMWDEHGDDIILMNNVLHLKILTLPYVPPNQSLTKRQR 195

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             L+  GDG T ++IA  +GL+  T+  +L  A   L+     QA+AKA
Sbjct: 196 EALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKA 244


>gi|22536505|ref|NP_687356.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|76788056|ref|YP_329044.1| LuxR family transcriptional regulator [Streptococcus agalactiae
           A909]
 gi|76797803|ref|ZP_00780068.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
 gi|77405005|ref|ZP_00782106.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410572|ref|ZP_00786932.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|22533337|gb|AAM99228.1|AE014206_8 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|76563113|gb|ABA45697.1| DNA-binding response regulator, LuxR family [Streptococcus
           agalactiae A909]
 gi|76586817|gb|EAO63310.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
 gi|77163287|gb|EAO74238.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77176444|gb|EAO79212.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 213

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              K  +    LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 137 AHDKCPALHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRT 196

Query: 223 QAIAKAIRFGYI 234
           QA+  A +   +
Sbjct: 197 QAVVYAFQHHLV 208


>gi|254464427|ref|ZP_05077838.1| response regulator receiver protein, putative [Rhodobacterales
           bacterium Y4I]
 gi|206685335|gb|EDZ45817.1| response regulator receiver protein, putative [Rhodobacterales
           bacterium Y4I]
          Length = 211

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 11/184 (5%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           +     Y     D          D  +    S    + W+ ++    +  S +       
Sbjct: 39  VFVHSTYAQRWVDRYVDQAYLLVDPTIQFGLSSTGWVTWKELE---RLFPSSKHFFEDAV 95

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                 G    +     +   +  +          I  A       +       +   S 
Sbjct: 96  KYGLVHGNTLAIS-ADGRVSVLSCSGPEWSDEELRIARAALYALHAL-------EYEPSH 147

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  LT      L++  +G   +EIAE LG+ + TV A   +A   LDA    Q I++ I+
Sbjct: 148 SITLTTPVKDVLRMMCNGCKDQEIAENLGVKLETVRARRRTAMQALDAKTSAQLISQVIK 207

Query: 231 FGYI 234
           FG I
Sbjct: 208 FGLI 211


>gi|329929253|ref|ZP_08283011.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936739|gb|EGG33180.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 220

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 39/97 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L      ++  H        +      + ++    LT RE   LQL   G  + EI+E 
Sbjct: 124 ELHPDAAGLLMTHVTSPAGEDEANGSSHQEAAQLNKLTRREQEVLQLIASGMNNREISEA 183

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L ++  TV  ++     KL   +R QA   A++ G +
Sbjct: 184 LYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 220


>gi|314934049|ref|ZP_07841412.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
 gi|313653160|gb|EFS16919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
          Length = 209

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|312863730|ref|ZP_07723968.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|311101266|gb|EFQ59471.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
          Length = 214

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +LT RE   L L   GY ++ IA +L +S+ TV  ++ +   KL+  +R Q
Sbjct: 139 HDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQ 198

Query: 224 AIAKAIRFGYI 234
           A+  A R   +
Sbjct: 199 AVVYAFRHHLV 209


>gi|83954970|ref|ZP_00963648.1| transcriptional regulator [Sulfitobacter sp. NAS-14.1]
 gi|83840696|gb|EAP79868.1| transcriptional regulator [Sulfitobacter sp. NAS-14.1]
          Length = 249

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 64/217 (29%), Gaps = 12/217 (5%)

Query: 28  IKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
           +         I  A D   R   Q     H Y  D             D  +    +G  
Sbjct: 33  LGVTGIGYGIIPYASDATVRGFTQAGFFRHTYPQDWVTAVEEQALVDDDISVELIANGTA 92

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG------YVIFTSEFL 139
            ++W             Q+   LE  +    G +  +              +V  T    
Sbjct: 93  EVLWNDASLLDDATEPQQMQSELENDIGMQFGASIALNRTPAGQAISGIGLWVSETRSDR 152

Query: 140 MLA--NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             A   +   +A       + + +       S   NLT RE  CL     G    EI   
Sbjct: 153 EFALYWQQHRDALRRLSFAMDEGIRRDH--MSVLVNLTPRERDCLSYLAIGLRPAEICWT 210

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S  T   ++  A  KL A  R  A+AK++  G I
Sbjct: 211 LKISEKTFEKHIKGAKEKLRASTRDHAVAKSLVLGLI 247


>gi|262203128|ref|YP_003274336.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262086475|gb|ACY22443.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 228

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLA 185
                       ++A    + A     ++IT+      +R  + A  +LT RE   L L 
Sbjct: 120 DAPADELVRAVRVVAAGEALLAPSITRRLITEVTSRRTRRKPNPALASLTPREREVLDLV 179

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +G ++ EI  +L ++  TV  ++ +   KL   +R QA+  A   G 
Sbjct: 180 AEGKSNAEIGAELFVAEQTVKTHVSNVLAKLGLRDRAQAVVFAYENGL 227


>gi|251783082|ref|YP_002997385.1| putative two-component response regulator [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391712|dbj|BAH82171.1| putative two-component response regulator [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 215

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +       LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 139 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 198

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 199 QAVVYAFRHHLV 210


>gi|148654644|ref|YP_001274849.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148566754|gb|ABQ88899.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 471

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ERE   L+L   G T+++IA +L +S +TV  +L +   K+   +R +A   A+
Sbjct: 5   TLPQLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAV 64

Query: 230 RFGYI 234
           R G +
Sbjct: 65  RNGLL 69


>gi|329117459|ref|ZP_08246176.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907864|gb|EGE54778.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 213

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K       LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KLD  +R Q
Sbjct: 138 HDKNPELHEELTAREFDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLDVDDRTQ 197

Query: 224 AIAKAIRFGYI 234
           A+  A +   +
Sbjct: 198 AVVYAFQHHIV 208


>gi|322387271|ref|ZP_08060881.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141800|gb|EFX37295.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 210

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A + +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LNAGARGYMLKTSSADELFHAVQKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|167465455|ref|ZP_02330544.1| two-component response regulator LiaR [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 220

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           E +  A++ I E +      +T  L   +        LT RE   L L  DG T+++IAE
Sbjct: 120 EGIHKASQGIPEMNPEVSLALTRGLR-QRNAQPDEEGLTIREKEVLLLIADGKTNKDIAE 178

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L +S+ TV  ++ +  +K +  +R Q    A R G++
Sbjct: 179 ELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGWV 216


>gi|15675498|ref|NP_269672.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|71911145|ref|YP_282695.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|13622694|gb|AAK34393.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|71853927|gb|AAZ51950.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
          Length = 213

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +       LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 137 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVGDRT 196

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 197 QAVVYAFRHHLV 208


>gi|226307737|ref|YP_002767697.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226186854|dbj|BAH34958.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 239

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 11/213 (5%)

Query: 25  QNRIKARNFALYTINSALDFPRRQQLI-CELHNYDLDSGDIPNILIETYGDDFLFHFNS- 82
              ++AR  A          P   +        YD    +   +L +   D  LF     
Sbjct: 33  AEELRARGLAYSAAAVTYRDPSSGRHRALASSGYDARVLEF--LLDDFVADRNLFGIIRE 90

Query: 83  -GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
              +P+ WQ +          ++   +        G +  +     +   ++  S     
Sbjct: 91  ASGVPVFWQDV----PRFEQVEMVTDVLRPSGYAEGASVALGFSGREVTGLLHMSFADSG 146

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
             + + E   A     +    +  + +    +L+ RE   LQL   G  + EIAE+L +S
Sbjct: 147 VVDRVREVVAASSAACSRV--VGDQVALDRVHLSPREIQVLQLVARGAGNVEIAEELFVS 204

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  +L +  VK    +R+QA  +A ++G I
Sbjct: 205 RRTVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237


>gi|258650732|ref|YP_003199888.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553957|gb|ACV76899.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 214

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176
           L     G+++ T+    L   V   A G          +++  ++   +        LT 
Sbjct: 95  LRAGAAGFLLKTTPPRDLIRSVRQCAAGETTVGPTVMARLVDSYVGHQEPPPPGLAELTG 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   L+   DG ++ EIA +L L+  TV  ++     KL   +R+QA+  A R G 
Sbjct: 155 RELDVLRCLADGRSNAEIAGELFLAETTVKTHVARILAKLGVRDRVQAVVIAHRCGL 211


>gi|313606801|gb|EFR83477.1| transcriptional regulatory protein DegU [Listeria monocytogenes FSL
           F2-208]
          Length = 127

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   K+   +R QA+  AI
Sbjct: 60  PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 119

Query: 230 RFGYI 234
           + G++
Sbjct: 120 KHGWV 124


>gi|325289912|ref|YP_004266093.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965313|gb|ADY56092.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 212

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+    G +++EI   L +S  TV  +L +   KL+  +R QA  KA++  
Sbjct: 148 GLSKREMEILRAVARGSSNKEIGISLYISEKTVKNHLSNIFRKLEVEDRTQAAIKAVKLN 207

Query: 233 YI 234
            +
Sbjct: 208 LV 209


>gi|195978655|ref|YP_002123899.1| TCS response regulator YvqC-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975360|gb|ACG62886.1| TCS response regulator YvqC-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 197

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              ++      LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL   +R 
Sbjct: 121 AHDQQPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRT 180

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 181 QAVVYAFRHHLV 192


>gi|149182664|ref|ZP_01861132.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849633|gb|EDL63815.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 216

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + +     +++     +LT RE   L+  G+G T++EI+++L + V T   ++ +   KL
Sbjct: 135 MMNRFRPQERKL--HEDLTTRELEVLKCLGEGMTNQEISDELFIGVKTTKTHVSNILSKL 192

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA   A R G +
Sbjct: 193 GVADRTQAAIYANRNGIL 210


>gi|156742230|ref|YP_001432359.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156233558|gb|ABU58341.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 254

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            D   L +        L++RE   L+    G ++ EIAE L +S  TV  ++ S   KL 
Sbjct: 157 QDVTSLQEMEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLS 216

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R QA+  A+R G+I
Sbjct: 217 LNDRTQAVLYALRRGWI 233


>gi|116873879|ref|YP_850660.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742757|emb|CAK21881.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 228

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   K+   +R QA+  AI
Sbjct: 161 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 220

Query: 230 RFGYI 234
           + G++
Sbjct: 221 KHGWV 225


>gi|147669585|ref|YP_001214403.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|146270533|gb|ABQ17525.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 232

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE--LFKKRSSAARNL 174
           L      YV+  S    L   V     G          + I  ++E             L
Sbjct: 94  LRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETL 153

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   GYT  EIAEKL +S  TV  +  +   KLD  N+ Q +  A++ G I
Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|282895907|ref|ZP_06303947.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281199152|gb|EFA74021.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 240

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 44/74 (59%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L +  ++   +  LT+RE   L+L  DG ++ +IAEKL ++V TV  ++ +   KL A +
Sbjct: 166 LAIEYEQVLESSPLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADD 225

Query: 221 RIQAIAKAIRFGYI 234
           R QA  +A+R G +
Sbjct: 226 RTQAAVRALRSGLV 239


>gi|229493950|ref|ZP_04387722.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
 gi|229319227|gb|EEN85076.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
          Length = 239

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 7/211 (3%)

Query: 25  QNRIKARNFALYTINSALDFPRRQQLI-CELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
              ++AR  A          P   +        YD    +          + F     + 
Sbjct: 33  AEELRARGLAYSAAAVTYRDPSTGRHRALASSGYDARVLEFLLEDFVADRNLFGIIREAS 92

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
            +P+ WQ +          ++   +        G +  +     +   ++  S       
Sbjct: 93  GVPVFWQDV----PRFEQVEMVTDVLRPSGYAEGASVALGFSGREVTGLLHMSFADSGVV 148

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           + + E   A     +    +  + +    +L+ RE   LQL   G  + EIAE+L +S  
Sbjct: 149 DRVREVVAASSAACSRV--VGDQVALDRVHLSPREIQVLQLVARGAGNVEIAEELFVSRR 206

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +L +  VK    +R+QA  +A ++G I
Sbjct: 207 TVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237


>gi|229011537|ref|ZP_04168723.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749692|gb|EEL99531.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 211

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA +L ++  TV  ++
Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|158338160|ref|YP_001519337.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158308401|gb|ABW30018.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 238

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+RE   L+L   G ++  IA+KL +SV TV  ++ S   KL A +R QA  +A+R
Sbjct: 174 TEPLTDRELEVLELIVAGCSNAVIADKLYISVGTVKTHVRSILNKLCADDRTQAAVRALR 233

Query: 231 FGYI 234
            G +
Sbjct: 234 SGLV 237


>gi|322412404|gb|EFY03312.1| Two-component response regulator yvqC [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 213

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +       LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 137 AHDQHPDLHEELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 196

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 197 QAVVYAFRHHLV 208


>gi|289432845|ref|YP_003462718.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946565|gb|ADC74262.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 232

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE--LFKKRSSAARNL 174
           L      YV+  S    L   V     G          + I  ++E             L
Sbjct: 94  LRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETL 153

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   GYT  EIAEKL +S  TV  +  +   KLD  N+ Q +  A++ G I
Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|225868023|ref|YP_002743971.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701299|emb|CAW98303.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 213

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              ++      LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL   +R 
Sbjct: 137 AHDQQPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRT 196

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 197 QAVVYAFRHHLV 208


>gi|298490276|ref|YP_003720453.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298232194|gb|ADI63330.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 240

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L    ++      LT+RE   L+L   G ++ +IAEKL ++V TV  ++ +   KL A
Sbjct: 164 EALATEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCA 223

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QA  +A+R G +
Sbjct: 224 DDRTQAAVRALRSGLV 239


>gi|320159841|ref|YP_004173065.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993694|dbj|BAJ62465.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 214

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN--LTERET 179
               NGY++  +E   L   ++  A G      +V+   L + ++ +  +    L++RE 
Sbjct: 98  RAGANGYILKNTEPEDLRKALLNIAEGKGVLSPEVVPPVLGVMQRGTLDSSPQLLSDREL 157

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LQ   +G T+++IA +L +S +TV  ++     KL+A NR +A+ KA + G +
Sbjct: 158 EVLQCLAEGLTTQQIASRLFISENTVKTHIRHILDKLEASNRTEAVGKATQLGIL 212


>gi|296268760|ref|YP_003651392.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091547|gb|ADG87499.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 234

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 157 ITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                    +R     A  LTERE   L+L   G  + EIA+ L +S +TV  ++ +   
Sbjct: 152 FQTLSRREAERPPQVPAPRLTEREMEVLRLVAKGMHNREIAKALFISENTVKNHVRNILD 211

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +R++A+  A+R   +
Sbjct: 212 KLQLHSRMEAVVYAVRERLL 231


>gi|259505660|ref|ZP_05748562.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259166742|gb|EEW51296.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
          Length = 212

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 43/109 (39%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   A G           L  +  +   +LT RE   L+L 
Sbjct: 104 AGALGYLLKDAPPNELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EI   L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 164 AGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGLL 212


>gi|126649458|ref|ZP_01721699.1| YhcZ [Bacillus sp. B14905]
 gi|169825964|ref|YP_001696122.1| two-component response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|126593783|gb|EAZ87706.1| YhcZ [Bacillus sp. B14905]
 gi|168990452|gb|ACA37992.1| two-component response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 215

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H      +    +  +    +   LT RE   L     G ++ EIA  L ++  TV  +
Sbjct: 125 LHPEATTTLEMDRQEAQNAPHSLNPLTPREQDVLAELTKGKSNREIASSLFVTEKTVKTH 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   KL   +R QA   A++ G 
Sbjct: 185 ISNIFTKLQVQDRTQAALYAVKHGL 209


>gi|15616190|ref|NP_244495.1| two-component response regulator involved in degradative enzyme
           [Bacillus halodurans C-125]
 gi|10176252|dbj|BAB07347.1| two-component response regulator involved in degradative enzyme
           [Bacillus halodurans C-125]
          Length = 236

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DGY++  I E L +S  TV  ++ +   K++  +R QA+ ++I
Sbjct: 169 PLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESI 228

Query: 230 RFGYI 234
           + G++
Sbjct: 229 KNGWV 233


>gi|1706361|sp|P54662|DEGU_BREBE RecName: Full=Transcriptional regulatory protein degU
 gi|710496|gb|AAC41439.1| transcriptional activator protein [Brevibacillus brevis]
          Length = 236

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DGY++  I E L +S  TV  ++ +   K++  +R QA+ ++I
Sbjct: 169 PLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESI 228

Query: 230 RFGYI 234
           + G++
Sbjct: 229 KNGWV 233


>gi|323127832|gb|ADX25129.1| Two-component response regulator yvqC [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 213

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +       LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 137 AHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRT 196

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 197 QAVVYAFRHHLV 208


>gi|315647821|ref|ZP_07900922.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276467|gb|EFU39810.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 222

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAA------------RNLTERETSCLQLAG 186
           +    + ++E H     ++   + L +   S++              LT RE   LQL  
Sbjct: 115 IRRVFQGMVELHPDAAGLLMTHVTLPEGAESSSGPGRQEEAVQELDKLTRREQEVLQLIA 174

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G  + EI+E L ++  TV  ++     KL   +R QA   A++ G +
Sbjct: 175 SGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 222


>gi|251799449|ref|YP_003014180.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547075|gb|ACT04094.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 220

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  +  +  + LTERE   L L G G  ++EIA  L L+  TV  ++ +   KL   +R 
Sbjct: 150 LGAQEPAELKQLTEREKEVLALLGQGLNNKEIAGSLFLTEGTVKNHVSNVIAKLGLRDRT 209

Query: 223 QAIAKAIRF 231
           QA   A+R 
Sbjct: 210 QAAIYAVRH 218


>gi|81428980|ref|YP_395980.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610622|emb|CAI55673.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 199

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT RE   L L   G +++EIA++L +++ TV  ++ +   KL   +R QA   AI+ 
Sbjct: 136 EDLTNREREVLGLVAKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKH 195

Query: 232 GY 233
             
Sbjct: 196 QL 197


>gi|294501457|ref|YP_003565157.1| spore germination regulator [Bacillus megaterium QM B1551]
 gi|295706805|ref|YP_003599880.1| spore germination regulator [Bacillus megaterium DSM 319]
 gi|294351394|gb|ADE71723.1| spore germination regulator [Bacillus megaterium QM B1551]
 gi|294804464|gb|ADF41530.1| spore germination regulator [Bacillus megaterium DSM 319]
          Length = 74

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + +K       LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R 
Sbjct: 1   MKEKEFQPKPLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRS 60

Query: 223 QAIAKAIRFG 232
           QA+ + +R G
Sbjct: 61  QAVVELLRMG 70


>gi|225871059|ref|YP_002747006.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225700463|emb|CAW94880.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 213

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              ++ +    LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL   +R 
Sbjct: 137 AHDQQPNLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRT 196

Query: 223 QAIAKAIRFGYI 234
           QA+  A R   +
Sbjct: 197 QAVVYAFRHHLV 208


>gi|322373351|ref|ZP_08047887.1| DNA-binding response regulator VraR [Streptococcus sp. C150]
 gi|321278393|gb|EFX55462.1| DNA-binding response regulator VraR [Streptococcus sp. C150]
          Length = 214

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +LT RE   L L   GY ++ IA +L +S+ TV  ++ +   KL+  +R Q
Sbjct: 139 HDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQ 198

Query: 224 AIAKAIRFGYI 234
           A+  A R   +
Sbjct: 199 AVVYAFRHHLV 209


>gi|251799733|ref|YP_003014464.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547359|gb|ACT04378.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 242

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G +++ I E L +S  TV  ++ S   K++  +R QA+ ++I++G
Sbjct: 179 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVIQSIKYG 238

Query: 233 YI 234
           ++
Sbjct: 239 WV 240


>gi|296132074|ref|YP_003639321.1| transcriptional regulator, LuxR family [Thermincola sp. JR]
 gi|296030652|gb|ADG81420.1| transcriptional regulator, LuxR family [Thermincola potens JR]
          Length = 232

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A      ++       + +      LT RE   L+L   GYT+ +IA+KL +SV+TV  +
Sbjct: 127 ADSLIPDMMNRLSASLQVKPEKEILLTPREQEILELLAQGYTNGQIAKKLIISVNTVKNH 186

Query: 209 LGSATVKLDAVNRIQAIAKAIRFG 232
           + +   KL   NR + ++ A+  G
Sbjct: 187 VHNILEKLGVSNRAKLVSYAMSRG 210


>gi|25010384|ref|NP_734779.1| hypothetical protein gbs0310 [Streptococcus agalactiae NEM316]
 gi|77408096|ref|ZP_00784843.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77413304|ref|ZP_00789499.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|23094736|emb|CAD45955.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160618|gb|EAO71734.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77173280|gb|EAO76402.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 213

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              K  +    LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 137 AHDKCPALHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRT 196

Query: 223 QAIAKAIRFGYI 234
           QA+  A +   +
Sbjct: 197 QAVVYAFQHHLV 208


>gi|53716990|ref|YP_105811.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53721704|ref|YP_110689.1| GerR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|126457399|ref|YP_001074949.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|217419285|ref|ZP_03450792.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
 gi|226195037|ref|ZP_03790628.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242311517|ref|ZP_04810534.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
 gi|254179205|ref|ZP_04885857.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|254262387|ref|ZP_04953252.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
 gi|254299972|ref|ZP_04967418.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           406e]
 gi|52212118|emb|CAH38134.1| GerR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52422960|gb|AAU46530.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           23344]
 gi|126231167|gb|ABN94580.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106a]
 gi|157809957|gb|EDO87127.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           406e]
 gi|160694532|gb|EDP84542.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|217398589|gb|EEC38604.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
 gi|225932842|gb|EEH28838.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242134756|gb|EES21159.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
 gi|254213389|gb|EET02774.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
          Length = 296

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 78  LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 135

Query: 84  LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W   Q      + G       +R+       +G+ + + +   +      FT+  
Sbjct: 136 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 195

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 196 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 254

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 255 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 296


>gi|228477324|ref|ZP_04061962.1| DNA-binding response regulator [Streptococcus salivarius SK126]
 gi|228251343|gb|EEK10514.1| DNA-binding response regulator [Streptococcus salivarius SK126]
          Length = 214

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +LT RE   L L   GY ++ IA +L +S+ TV  ++ +   KL+  +R Q
Sbjct: 139 HDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQ 198

Query: 224 AIAKAIRFGYI 234
           A+  A R   +
Sbjct: 199 AVVYAFRHHLV 209


>gi|158320230|ref|YP_001512737.1| two component LuxR family transcriptional regulator [Alkaliphilus
           oremlandii OhILAs]
 gi|158140429|gb|ABW18741.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           oremlandii OhILAs]
          Length = 224

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L  +G  ++EI + L +S  TV  ++ +   K++  +R QA   A + 
Sbjct: 160 DELTRREYEVLTLLAEGINNKEIGDCLFISEKTVKNHVSNIFKKINVNDRTQAAIYAYKH 219

Query: 232 GY 233
             
Sbjct: 220 NI 221


>gi|73748824|ref|YP_308063.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660540|emb|CAI83147.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 232

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE--LFKKRSSAARNL 174
           L      YV+  S    L   V     G          + I  ++E             L
Sbjct: 94  LRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETL 153

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   GYT  EIAEKL +S  TV  +  +   KLD  N+ Q +  A++ G I
Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|225377710|ref|ZP_03754931.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM
           16841]
 gi|225210459|gb|EEG92813.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM
           16841]
          Length = 186

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 7/126 (5%)

Query: 110 GGLLPFAGIAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
             ++  +G   PV     +  G   F ++ +               +++   L    +  
Sbjct: 63  QRVVILSGYDLPVYRSEGRKIGAKGFVNKNIEPEK-----LISILSKIMQGILYFD-REI 116

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+ E   +QL  +G   ++IA  L +S  T++ +L     KLD  + ++A+ KA
Sbjct: 117 PFIEGLTDSEKQIIQLIAEGQKRKDIASTLYISERTLSNHLQHIFEKLDVTSAVEAVTKA 176

Query: 229 IRFGYI 234
           I+ GYI
Sbjct: 177 IQLGYI 182


>gi|326381529|ref|ZP_08203223.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199776|gb|EGD56956.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 209

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAG 186
                       ++A    + A     ++I        +K ++AA +LT RE   L    
Sbjct: 102 DAPADELVRAVRVVAAGDALLAPSVTKRLIEQVTSRTTRKATAAAESLTPRELEVLLTVA 161

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           DG ++ EIA++L +S  TV  ++ +   KL   +R QA+  A   G 
Sbjct: 162 DGKSNGEIADELFVSEQTVKTHVSNMLTKLGLRDRAQAVVFAYENGL 208


>gi|319744296|gb|EFV96660.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 217

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              K  +    LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R 
Sbjct: 141 AHDKCPALHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRT 200

Query: 223 QAIAKAIRFGYI 234
           QA+  A +   +
Sbjct: 201 QAVVYAFQHHLV 212


>gi|305673633|ref|YP_003865305.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411877|gb|ADM36996.1| two-component response regulator (paired with YhcY) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 215

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V+T               LT RE   L    +G +++EIA  L +S  TV  ++ 
Sbjct: 127 AIMPHVLTHMRNQHDPEKEKIYQLTRREKDVLNEIANGKSNKEIAAALFISEKTVKTHVS 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL+  +R QA   A+++  
Sbjct: 187 NLLAKLEVADRTQAALFAVKYNL 209


>gi|238926042|ref|YP_002939560.1| two-component response regulator (extracellular proteinase response
           regulator) [Eubacterium rectale ATCC 33656]
 gi|238877719|gb|ACR77426.1| two-component response regulator (extracellular proteinase response
           regulator) [Eubacterium rectale ATCC 33656]
 gi|291526556|emb|CBK92143.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale DSM 17629]
 gi|291529198|emb|CBK94784.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale M104/1]
          Length = 214

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L+    G  + +IA+++ +S  TV  ++ S   KL+  +R QA   AIR 
Sbjct: 149 DALTKREMEVLKEMAVGKFNRDIAKEMKISERTVKNHISSIFKKLEVTDRTQAAVFAIRN 208

Query: 232 GYI 234
             I
Sbjct: 209 NII 211


>gi|254412403|ref|ZP_05026177.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180713|gb|EDX75703.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 271

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LTERE   L+L   G ++  IAEKL ++V TV  ++ +   KL   +R QA   A+R
Sbjct: 207 AYPLTERELEVLELIVAGASNAAIAEKLYITVGTVKTHVRNILNKLCVDDRTQAAVHALR 266

Query: 231 FGYI 234
            G I
Sbjct: 267 SGLI 270


>gi|219849240|ref|YP_002463673.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543499|gb|ACL25237.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 247

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAE 196
           +V++E      ++++ F  L + ++ A          L+ERE   L+    G +++EIA+
Sbjct: 137 DVLMEEPRIAGRILSQFRNLPEVQTLADDLGIQIFTPLSEREIEVLERIAAGSSNKEIAD 196

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LG+S  TV  ++ S   KL   +R QA+  A+R G+I
Sbjct: 197 ALGISTQTVKNHISSILRKLSLNDRTQAVIFALRRGWI 234


>gi|297199099|ref|ZP_06916496.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297147291|gb|EDY59218.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 224

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 151 GACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           G    V+ ++  L    + A+         LTERET  L+L   G + ++IAE+L +S  
Sbjct: 132 GLAGLVLGEYRRLASDPAPASDPDRPRAPELTERETEVLRLVAKGLSYKQIAERLVISHR 191

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 192 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 221


>gi|83943587|ref|ZP_00956046.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           EE-36]
 gi|83845819|gb|EAP83697.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           EE-36]
          Length = 249

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 65/217 (29%), Gaps = 12/217 (5%)

Query: 28  IKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
           +         I  A D   R   Q     H Y  D             D  +    +G  
Sbjct: 33  LGVTGIGYGIIPYASDATVRGFTQAGFFRHTYPQDWVTAVEEQALVDDDISVELIANGTK 92

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKN-----GYVIFTSEFL 139
            ++W             Q+   LE  +    G +F + R    +       +V  T    
Sbjct: 93  EVLWNDTSLLDHATEPQQMQSELENDIGMQFGASFALTRTPAGQAISGIGLWVSETRSDR 152

Query: 140 MLA--NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 +    A       + + +       S   NLT RE  CL     G    EI   
Sbjct: 153 EFDLYWQQHRSALRRLSFAMDEGIRRDH--MSVLVNLTPRERDCLSYLAIGLRPAEICWT 210

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S  T   ++  A  KL A  R  A+AK++  G I
Sbjct: 211 LKISEKTFEKHIKGAKEKLRASTRDHAVAKSMVLGLI 247


>gi|297622897|ref|YP_003704331.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164077|gb|ADI13788.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 508

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 84/237 (35%), Gaps = 18/237 (7%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALD--FPRRQQLICELHNYDLDSG--DIPNILIET 71
           ++  R        +AR F ++              +   ++++  L         +L  +
Sbjct: 271 DVQKRALEALRESEARFFTVFHAGPVAACITALATRHFVDVNDAFLALTGFSREEVLGRS 330

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHK 128
             +  L+           Q+  +E   E+   L +RL         I      +R G  +
Sbjct: 331 ARELGLWATQPSERGASCQAGAQEPPPEAFRNLELRLRTKTGEVRDILISGEVLRFGDER 390

Query: 129 NGYVIF--TSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS--SAARNLTER 177
               +F   +E      ++                QV+    ++  ++   SA   L++R
Sbjct: 391 GQLKLFYDITERKQTEEQLHRALQEVMSDTAWFSSQVLERLSQVRARKLERSALVTLSKR 450

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+    G ++E IA +LGL+  TV  Y+ +   KL   +R +A+  A   G I
Sbjct: 451 ERQVLERLARGKSNEAIAAELGLATQTVRNYISAVYDKLGVRSRAEAVVWARERGVI 507


>gi|55823331|ref|YP_141772.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|116628130|ref|YP_820749.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|55739316|gb|AAV62957.1| response regulator (homolog to RR03 Spn) [Streptococcus
           thermophilus CNRZ1066]
 gi|116101407|gb|ABJ66553.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus
           thermophilus LMD-9]
 gi|312278734|gb|ADQ63391.1| Two-component response transcriptional regulator (CheY-like
           receiver and HTH DNA-binding domains), putative
           [Streptococcus thermophilus ND03]
          Length = 214

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA +L +S+ TV  ++ +   KL+  +R QA+  A R
Sbjct: 146 HDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFR 205

Query: 231 FGYI 234
              +
Sbjct: 206 HHLV 209


>gi|289435776|ref|YP_003465648.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172020|emb|CBH28566.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313631967|gb|EFR99092.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL
           N1-067]
          Length = 228

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   K+   +R QA+  AI
Sbjct: 161 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 220

Query: 230 RFGYI 234
           + G++
Sbjct: 221 KHGWV 225


>gi|16801720|ref|NP_471988.1| hypothetical protein lin2659 [Listeria innocua Clip11262]
 gi|16804553|ref|NP_466038.1| hypothetical protein lmo2515 [Listeria monocytogenes EGD-e]
 gi|46908687|ref|YP_015076.1| DNA-binding response regulator DegU [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093717|ref|ZP_00231469.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b
           H7858]
 gi|47096108|ref|ZP_00233709.1| DNA-binding response regulator DegU [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963383|ref|YP_002349061.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|224499869|ref|ZP_03668218.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes Finland 1988]
 gi|224503244|ref|ZP_03671551.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes FSL R2-561]
 gi|226225063|ref|YP_002759170.1| two-component response regulator DegU [Listeria monocytogenes
           Clip81459]
 gi|254825362|ref|ZP_05230363.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J1-194]
 gi|254828090|ref|ZP_05232777.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N3-165]
 gi|254831062|ref|ZP_05235717.1| two-component response regulator DegU [Listeria monocytogenes
           10403S]
 gi|254853956|ref|ZP_05243304.1| DegU [Listeria monocytogenes FSL R2-503]
 gi|254900347|ref|ZP_05260271.1| two-component response regulator DegU [Listeria monocytogenes
           J0161]
 gi|254913414|ref|ZP_05263426.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818]
 gi|254932243|ref|ZP_05265602.1| DNA-binding response regulator DegU [Listeria monocytogenes
           HPB2262]
 gi|254937795|ref|ZP_05269492.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900]
 gi|254993056|ref|ZP_05275246.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J2-064]
 gi|255030722|ref|ZP_05302673.1| two-component response regulator DegU [Listeria monocytogenes LO28]
 gi|255521855|ref|ZP_05389092.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J1-175]
 gi|284802953|ref|YP_003414818.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578]
 gi|284996094|ref|YP_003417862.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923]
 gi|290892678|ref|ZP_06555670.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J2-071]
 gi|300764985|ref|ZP_07074973.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N1-017]
 gi|16412003|emb|CAD00593.1| lmo2515 [Listeria monocytogenes EGD-e]
 gi|16415195|emb|CAC97885.1| lin2659 [Listeria innocua Clip11262]
 gi|46881959|gb|AAT05253.1| DNA-binding response regulator DegU [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47015569|gb|EAL06501.1| DNA-binding response regulator DegU [Listeria monocytogenes str.
           1/2a F6854]
 gi|47017911|gb|EAL08692.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b
           H7858]
 gi|50313181|gb|AAT74538.1| DegU [Listeria monocytogenes]
 gi|217332653|gb|ACK38447.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|225877525|emb|CAS06239.1| Putative two-component response regulator DegU [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258600475|gb|EEW13800.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N3-165]
 gi|258607345|gb|EEW19953.1| DegU [Listeria monocytogenes FSL R2-503]
 gi|258610399|gb|EEW23007.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900]
 gi|284058515|gb|ADB69456.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578]
 gi|284061561|gb|ADB72500.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923]
 gi|290557738|gb|EFD91260.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J2-071]
 gi|293583800|gb|EFF95832.1| DNA-binding response regulator DegU [Listeria monocytogenes
           HPB2262]
 gi|293591421|gb|EFF99755.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818]
 gi|293594605|gb|EFG02366.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J1-194]
 gi|300514285|gb|EFK41344.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N1-017]
 gi|307572042|emb|CAR85221.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313617172|gb|EFR89687.1| transcriptional regulatory protein DegU [Listeria innocua FSL
           S4-378]
 gi|313622371|gb|EFR92844.1| transcriptional regulatory protein DegU [Listeria innocua FSL
           J1-023]
 gi|328465121|gb|EGF36389.1| hypothetical protein LM1816_15707 [Listeria monocytogenes 1816]
 gi|328471125|gb|EGF42029.1| hypothetical protein LM220_09715 [Listeria monocytogenes 220]
 gi|332312945|gb|EGJ26040.1| Transcriptional regulatory protein degU [Listeria monocytogenes
           str. Scott A]
          Length = 228

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ S   K+   +R QA+  AI
Sbjct: 161 PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAI 220

Query: 230 RFGYI 234
           + G++
Sbjct: 221 KHGWV 225


>gi|194291999|ref|YP_002007906.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225903|emb|CAQ71850.1| putative transcriptional regulator, LuxR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 333

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 68/218 (31%), Gaps = 13/218 (5%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNY-DLDSGDIPNILIETYGDDFLFHFNS 82
           +Q+ I+A  F      +A     + Q      +Y      +          D       +
Sbjct: 92  MQSAIRAIGFDWLGYATAAHVGGQLQPRTFFESYSPPGWRERYFRERYYEIDPRTPQPGT 151

Query: 83  GLLPIIWQSIQEET-----VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
             LP +W +          V     +  +         +GI   + +  +    +I    
Sbjct: 152 FCLPTVWDADDLAQTPLGNVPPLRRRRFLEDLRDAGVRSGIFLNLPMPGNNEFVLISFMS 211

Query: 138 FLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +              +    A ++ +T  +E+          L++ +   L     G +
Sbjct: 212 GIESRRWIGDSVVGQALAMGLALHEFLTCHVEIPAFAGRHREGLSDVQRDILACLAQGLS 271

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +EIA ++ +S+  V+ ++          NR+Q  + A
Sbjct: 272 DKEIARRMDMSIFNVDYHMRRLRSHFGVRNRVQLASAA 309


>gi|159897838|ref|YP_001544085.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890877|gb|ABX03957.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 206

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 48/113 (42%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR G           + L  A  +I       + +I   L    +R +    LT RE   
Sbjct: 94  VRAGAQGYLLKGAPRDELFAAIRLIHAGGSTLHPLIASKLLRQVQRDTTLVELTPREHEV 153

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQ    G+ +++IA +L ++  TV  +L S   KL A NR +A+A A     I
Sbjct: 154 LQHLAQGFANKQIAYQLNITERTVKFHLNSIFQKLGAHNRTEAVAIAYERQLI 206


>gi|254442705|ref|ZP_05056181.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198257013|gb|EDY81321.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 200

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L     G +++EIA +L L   TV  +L +   KL   +R QAI  A++ G
Sbjct: 136 QLTKRELEVLAQVAKGRSNKEIANELNLVEGTVKVHLTNILSKLGVSDRTQAILAAVKRG 195

Query: 233 YI 234
            I
Sbjct: 196 LI 197


>gi|238563430|ref|ZP_00438873.2| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
 gi|254189698|ref|ZP_04896207.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254204651|ref|ZP_04911004.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|147754237|gb|EDK61301.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|157937375|gb|EDO93045.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|238520698|gb|EEP84156.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
          Length = 291

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 73  LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 130

Query: 84  LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W   Q      + G       +R+       +G+ + + +   +      FT+  
Sbjct: 131 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 190

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 191 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 249

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 250 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 291


>gi|328552560|gb|AEB23052.1| two-component response regulator (YhcY) [Bacillus amyloliquefaciens
           TA208]
 gi|328910960|gb|AEB62556.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 214

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   LQ    G +++EIA  L +S  TV  ++ +   KL+  +R QA   A+++ 
Sbjct: 148 QLTPREKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYN 207

Query: 233 Y 233
            
Sbjct: 208 I 208


>gi|307150230|ref|YP_003885614.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
 gi|306980458|gb|ADN12339.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 237

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 8/178 (4%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
                  D    +     D  L +      P   + +           L           
Sbjct: 57  GLPDSFVDRYEKIGRQ-VDPVLKYVIERHAPAH-EQLLLTQEQWKQSLLYQNCCSSFDHE 114

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSA--- 170
             +  P+       G V F       A   + ++     C     +   +          
Sbjct: 115 HIMTGPIVGQGQLIGTVHFARIRETSAFNIDDLMFLSAICTHFSANLARINSPDPQLTSD 174

Query: 171 -ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            A+ LT RE   + L   G T+ EI ++L ++ ++V   L     KLD  +R Q +AK
Sbjct: 175 WAKKLTSRELQIISLVAQGLTNTEIGQELWITQNSVKQALKRIFRKLDVRSRAQMVAK 232


>gi|223044000|ref|ZP_03614040.1| response regulator protein VraR [Staphylococcus capitis SK14]
 gi|222442543|gb|EEE48648.1| response regulator protein VraR [Staphylococcus capitis SK14]
          Length = 209

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+       KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   
Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R QA+  A +   I
Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208


>gi|320160284|ref|YP_004173508.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994137|dbj|BAJ62908.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 216

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 136 SEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            E +  A       H     +++ +      ++ +    LTERE   L+    G ++ EI
Sbjct: 114 GEAIRAAARGEAVLHPQVAARLVKEMRGTPAEKPNPYTALTEREQEVLKCIAQGMSNAEI 173

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  L +S  TV  ++ +   KL   +R QA   A + G I
Sbjct: 174 AAHLVVSEKTVKGHVSNILSKLHLADRTQAAIYAWKEGLI 213


>gi|229196490|ref|ZP_04323234.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228586846|gb|EEK44920.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 214

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE   L+    G +++EIA  L ++  TV  ++ +   KL+  +R QA   A++ G
Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207


>gi|261407454|ref|YP_003243695.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329927546|ref|ZP_08281731.1| putative nitrate/nitrite response regulator protein NarL
           [Paenibacillus sp. HGF5]
 gi|261283917|gb|ACX65888.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328938415|gb|EGG34804.1| putative nitrate/nitrite response regulator protein NarL
           [Paenibacillus sp. HGF5]
          Length = 219

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K   +   LT RE   L L  +G ++ +I+  L +S +TV  +L +   KL   NR+Q 
Sbjct: 145 DKPDPSKSPLTAREKEILGLVAEGLSNRDISSDLCISENTVKNHLKNILQKLHLENRVQL 204

Query: 225 IAKAIRFGY 233
              A   G+
Sbjct: 205 TRYAFEQGW 213


>gi|163735305|ref|ZP_02142740.1| hypothetical protein RLO149_07117 [Roseobacter litoralis Och 149]
 gi|161391519|gb|EDQ15853.1| hypothetical protein RLO149_07117 [Roseobacter litoralis Och 149]
          Length = 317

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 69/227 (30%), Gaps = 15/227 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L+ELS  +         +NFA++ ++       + ++    H+   +           Y 
Sbjct: 37  LEELSELMWRAATSTGFQNFAIFVLHQGQGSSFKSRICTSFHD---EWIARYIQSNYQYV 93

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  +   +      ++  +       +        E   +   G+ FP+         V 
Sbjct: 94  DPVMSKASISDDWFLYSDL--AGTAPAVECFWRDAEKHRIGRNGVCFPMTRSDGTRVAVS 151

Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           FT+     A E  +     +        +  F       S     LT  E   L +    
Sbjct: 152 FTTLNTNTAVEEAVRLNGYDLRFIAESAVDAFCYAASDSSLENDTLTVDELRFLHVLA-- 209

Query: 189 YTSEEIAEKLGL--SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            TS +  E L +  S  +  +   S   KL      QA+A A    +
Sbjct: 210 -TSADPEEALKITPSFGSNKSLQVSIRKKLSVDTVYQAVAIAASRNW 255


>gi|170724598|ref|YP_001758624.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169809945|gb|ACA84529.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 238

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T + +++L      L  +    +A   A    N    + +         N  LD+    N
Sbjct: 18  TLQHNTTLGSRQLLLDKLMEMFRADYGASCCWNPNEKYYQE----GVFSNMSLDNISKYN 73

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                + D            +    +     +    +             G+   +  G 
Sbjct: 74  D-YYQFHDPITNKLRQFRRAVAVSEVISRDQLI-QTEFYNDFLQRDGLSFGVNLHIYCGQ 131

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-----TERETSC 181
                V           +V    H     ++  +L    +R     +L     T+RE   
Sbjct: 132 EHVFDVRLWRSQQQGDFDVK---HLNQLDLLLPYLRAMGEREPLKESLSFNLFTQRELEV 188

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     G   + +A  + +SV T+ +++ S   K D  +R + I+K
Sbjct: 189 ISQIKSGMNDKNMARTMNVSVTTLRSHIRSIYKKADVHSRTELISK 234


>gi|256396690|ref|YP_003118254.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362916|gb|ACU76413.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 40/71 (56%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                S+A  LT+RE   L+L   G  + EIA++L ++ +TV  ++ +   KL+  +R++
Sbjct: 152 APGPVSSAPKLTDREMEVLKLVATGRNNREIAKELFITENTVKNHVRNILEKLNLHSRME 211

Query: 224 AIAKAIRFGYI 234
           A+  A+R   +
Sbjct: 212 AVVYAVREKLL 222


>gi|121533453|ref|ZP_01665281.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121308012|gb|EAX48926.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 225

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   LQL   G ++ EIA+KL LS  TV  +L +   K++  +R QA+  AIR 
Sbjct: 159 ERLTYRELEVLQLVAQGLSNSEIAQKLYLSEKTVKNHLTNIFRKINVTDRTQALIYAIRH 218

Query: 232 GYI 234
             +
Sbjct: 219 KIV 221


>gi|15599074|ref|NP_252568.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAO1]
 gi|107103394|ref|ZP_01367312.1| hypothetical protein PaerPA_01004464 [Pseudomonas aeruginosa PACS2]
 gi|116051915|ref|YP_789242.1| transcriptional regulator NarL [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889841|ref|YP_002438705.1| transcriptional regulator NarL [Pseudomonas aeruginosa LESB58]
 gi|254236778|ref|ZP_04930101.1| two-component response regulator NarL [Pseudomonas aeruginosa
           C3719]
 gi|254242570|ref|ZP_04935892.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192]
 gi|296387604|ref|ZP_06877079.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAb1]
 gi|313109299|ref|ZP_07795267.1| two-component response regulator NarL [Pseudomonas aeruginosa
           39016]
 gi|9950059|gb|AAG07266.1|AE004805_4 two-component response regulator NarL [Pseudomonas aeruginosa PAO1]
 gi|115587136|gb|ABJ13151.1| putative nitrate/nitrite response regulator; NarL [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126168709|gb|EAZ54220.1| two-component response regulator NarL [Pseudomonas aeruginosa
           C3719]
 gi|126195948|gb|EAZ60011.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192]
 gi|218770064|emb|CAW25826.1| two-component response regulator NarL [Pseudomonas aeruginosa
           LESB58]
 gi|310881769|gb|EFQ40363.1| two-component response regulator NarL [Pseudomonas aeruginosa
           39016]
          Length = 219

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154
              L    +    + F V         V+           +  E ++E            
Sbjct: 76  LRALREAGVDARIVVFTVSDDKGDVVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTL 135

Query: 155 -----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                Q++   L     RS +   LTERE   L+    GY+++ IA KL ++  TV  ++
Sbjct: 136 SPQLTQILAQALRGD-DRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHV 194

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL   +R++A   A+    +
Sbjct: 195 KRVLHKLGMRSRVEAAVWAVENDLV 219


>gi|332523307|ref|ZP_08399559.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314571|gb|EGJ27556.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 213

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  
Sbjct: 142 PDLHEELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVY 201

Query: 228 AIRFGYI 234
           A R   +
Sbjct: 202 AFRHHLV 208


>gi|238782956|ref|ZP_04626984.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
 gi|238716159|gb|EEQ08143.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
          Length = 244

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 52/188 (27%), Gaps = 15/188 (7%)

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +        Y D  +   +  + P  W                  +        G  F
Sbjct: 53  WFEFYTKNNFQYIDPIIITASHRVTPFSWDENIM-INSGLKLPKIFDVAKEYDVINGHTF 111

Query: 121 PVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDF-------------LELFKK 166
            +   ++    +   ++       E  I    A  Q++                      
Sbjct: 112 VLHDQYYNLTILSLMTDKDCDEDIEDKIANDKANIQMLLMLIHEKLTSFYNDLNRSSDFC 171

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +       T+RE   +  A  G +  EIA  LG+   TV  ++G    KL   N   AI+
Sbjct: 172 KMGRNEIFTKRENEIIYWASVGKSYPEIALILGIKPTTVKHHMGKVVRKLGVTNAKHAIS 231

Query: 227 KAIRFGYI 234
            A+    I
Sbjct: 232 LAVELQLI 239


>gi|17158658|ref|NP_478169.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17134607|dbj|BAB77165.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 240

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 11  SSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +SS+ +L    +        ++++ +Y  + A      QQ    L        D  + + 
Sbjct: 15  ASSVNQLCGHYMDAAGELFGSQHWGIYIHDWAG-----QQGTIHLQGLPDSFIDYYSKVG 69

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  + +      P   Q I  E   + S    +           +  P+       
Sbjct: 70  AAL-DKVMEYVVCHHAPAHEQIIFTEATWKQSELYQIGCGKIYDHEHIMTGPIVGEGRLI 128

Query: 130 GYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQ 183
           G V F           + +++    C  +      L  +          +LT RE     
Sbjct: 129 GTVQFARTSGNPAYNTQDLLQLSAICAHLSAKLALLRSQHELFVPKPEISLTPRELQMAA 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L   G T+ EIA +L +S +TV   L     KLD   R + +A+
Sbjct: 189 LVAKGLTNAEIAAELWISQNTVKQTLKRIFRKLDVSARAEMVAR 232


>gi|159040348|ref|YP_001539601.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157919183|gb|ABW00611.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 219

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 149 AHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           A     +V    +  +  R   A        LT RE   L+L  DG ++ EIA  L +S 
Sbjct: 127 AALLAPEVTRQLVGRYAARIRPAEDSSSEIPLTPRELEVLRLIADGLSNSEIAATLVISQ 186

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+     KLD  +R+QA+  A R G +
Sbjct: 187 ETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218


>gi|302533992|ref|ZP_07286334.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442887|gb|EFL14703.1| two-component system response regulator [Streptomyces sp. C]
          Length = 233

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 35/232 (15%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   + A  F +           R+          LD            G
Sbjct: 22  VDDHPMWRDAVARDLAAAGFDVVATAGDGPEAVRRARAAAPRVLVLDLN--------LPG 73

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++ +   L V +       A +   V+ G      + 
Sbjct: 74  MPGVQVCKE--------------LVGADPALRVLVLSASGEHADVLEAVKSGATGY-LLK 118

Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAAR------NLTERETSC 181
                 ++       A       G    V+ ++  L    + AA        LT+RET  
Sbjct: 119 SAGAQELIDAVRRTAAGDPVFTPGLAGLVLGEYRRLATDPAPAAPDVPKAPQLTDRETEV 178

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 179 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 230


>gi|322391513|ref|ZP_08064982.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145596|gb|EFX40988.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 210

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ T+    L  A   +     A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGARGYMLKTASADELLHAVRKVAAGEFAIEQEVSKKVEYNRNHVELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL   +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205


>gi|86739750|ref|YP_480150.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86566612|gb|ABD10421.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 238

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 157 ITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                   + R  A    LT RE   L+L  +G  + EIA KL +S +TV  ++ +   K
Sbjct: 157 FATMARGTEDRPRAHAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDK 216

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L   +R++A+  A+R G 
Sbjct: 217 LQLHSRMEAVMYAVRQGL 234


>gi|315304744|ref|ZP_07874927.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL
           F6-596]
 gi|313626888|gb|EFR95838.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL
           F6-596]
          Length = 228

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 151 GACYQVITDFLELFKKRSS-------------AARNLTERETSCLQLAGDGYTSEEIAEK 197
               ++I ++  L    ++                 LT RE   LQL  DG ++  I E 
Sbjct: 129 RVAIKLIREYRHLASTNAAQGVYGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGET 188

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S  TV  ++ S   K+   +R QA+  AI+ G++
Sbjct: 189 LFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGWV 225


>gi|297160220|gb|ADI09932.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 213

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL-ELFKKRSSAARNLTERETSC 181
               GY++  +    L   V   A G       V++  +  +    +     L+ RE   
Sbjct: 100 AGATGYLLKDAPRDELFTAVRAAAEGRTVLSPAVVSRLVGAVRNPATPTVEVLSAREREV 159

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G ++ EIA +L +S  TV  +L     KL   +R  A+A A   G +
Sbjct: 160 LELVAKGTSNREIARELFISEATVKTHLTHLYRKLGVKDRAAAVAVAYDRGIL 212


>gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 209

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               K+ +    LT+RE   LQ    G +++EIA +L ++  TV  ++ +   KL+  +R
Sbjct: 137 RSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDR 196

Query: 222 IQAIAKAIRFG 232
            QA   A++ G
Sbjct: 197 TQAALYAVKHG 207


>gi|152032256|gb|ABS28970.1| acyl-homoserine lactone transcriptional regulator [Burkholderia
           vietnamiensis]
          Length = 157

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 13/156 (8%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           NY     +          D  + H  S + P+IW++  +   ++          G     
Sbjct: 5   NYPQTWVERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQ-----FWEEAGQHGLR 59

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRS 168
            G   P        G +        +    + E               ++  L L +   
Sbjct: 60  HGWCMPSVSRTGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHL-LQRLVP 118

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                LT RE   LQ +  G T  EI + + +   T
Sbjct: 119 EYTVELTVREREALQWSAAGKTYAEIGKIMHVDDRT 154


>gi|328952588|ref|YP_004369922.1| two component transcriptional regulator, LuxR family [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452912|gb|AEB08741.1| two component transcriptional regulator, LuxR family [Desulfobacca
           acetoxidans DSM 11109]
          Length = 222

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 151 GACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               Q+    L      +       LT+RE   L+L  +G +S+EI   L +S  TV  +
Sbjct: 130 LLSPQLKDLLLRKYREDRSQFPEDPLTKREKEILRLIAEGKSSKEIGAVLFISSRTVEHH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
             +   KL      + +  AI+ GY
Sbjct: 190 RANMMRKLGCRKIAELVRYAIQKGY 214


>gi|309791230|ref|ZP_07685762.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308226792|gb|EFO80488.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 218

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           +  +  A       H      +       +   +    LT RE   L+L   G +++EIA
Sbjct: 114 AHAIRAAQRNEAVLHPEVAAKLMQEFSAPRSSETTVDQLTPREMDVLRLVAKGMSNKEIA 173

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + L +S  T   +L +   KL   +R Q    A+R   +
Sbjct: 174 DTLVISEKTTKTHLSNILSKLHLADRTQVAIYALRKRLV 212


>gi|55821406|ref|YP_139848.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737391|gb|AAV61033.1| response regulator (homolog to RR03 Spn) [Streptococcus
           thermophilus LMG 18311]
          Length = 214

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA +L +S+ TV  ++ +   KL+  +R QA+  A R
Sbjct: 146 HDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFR 205

Query: 231 FGYI 234
              +
Sbjct: 206 HHLV 209


>gi|229169497|ref|ZP_04297202.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613996|gb|EEK71116.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 184

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 120 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHVNKIFRKLNVKSRSQAVIYAVRNQ 179

Query: 233 YI 234
            +
Sbjct: 180 LV 181


>gi|219848256|ref|YP_002462689.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219542515|gb|ACL24253.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 236

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETS 180
                  +   +    L N+ ++       +V+  F EL     +  +S    LT RE  
Sbjct: 113 PDELVQMIREVARGRYLINDAVLARPNVAARVLHQFRELAATEEEDSASLFAPLTSREIE 172

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L     G +++EIA +L +S  TV  ++ S   KL   +R  A+  AI+ G+I
Sbjct: 173 ILDCIARGLSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIVAIKKGWI 226


>gi|111221195|ref|YP_711989.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111148727|emb|CAJ60403.1| Putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 213

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                   + R    A +LT RE   L+L  +G  + EIA KL +S +TV  ++ +   K
Sbjct: 132 FATMARGTEDRPRVNAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDK 191

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L   +R++A+  A+R G 
Sbjct: 192 LQLHSRMEAVMYAVRQGL 209


>gi|320532198|ref|ZP_08033064.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135576|gb|EFW27658.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 245

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 5/135 (3%)

Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANE-VIIEAHGACYQVIT 158
             +         AG +  +    R            S   +++              + +
Sbjct: 109 FDLDEYAFAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAASLPS 168

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                         +LT RE   L L   G ++ EIA  L +S  TV  ++G+   KLD 
Sbjct: 169 SDAPAQPSSDPRIDSLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLTKLDV 228

Query: 219 VNRIQAIAKAIRFGY 233
            +R+QA+  A   G 
Sbjct: 229 RDRVQAVVVAYETGL 243


>gi|297583730|ref|YP_003699510.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297142187|gb|ADH98944.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 212

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            + KK  +    LT RE   L+L   G +++EI + L +S+ TV  ++ +   KL   +R
Sbjct: 136 RMHKKPPAEHEQLTARELEVLELMSRGMSNQEIGDALYISLKTVKVHVSNILSKLGVHDR 195

Query: 222 IQAIAKAIRFGY 233
            QA+  A +   
Sbjct: 196 TQAVIYAFKENL 207


>gi|319653424|ref|ZP_08007524.1| response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394908|gb|EFV75646.1| response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 210

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L L   G T+++IA++L +++ TV  ++ +   KL   +R QA+  A 
Sbjct: 145 PHEELTSREMEILLLMTQGKTNQDIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAF 204

Query: 230 RFGYI 234
           +   +
Sbjct: 205 KHSLV 209


>gi|331699103|ref|YP_004335342.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953792|gb|AEA27489.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 198

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 2/157 (1%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                 P+    +  +  + +  + + RL         I F            I      
Sbjct: 41  ARFSRQPVDVVLVGTQRAVPTGVEATRRLVAAHPQANVIVFGAPDDAGSIAAAIAGGARG 100

Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197
            L  +    E   A    +        +  +     LTERE   L+    G ++ +I  +
Sbjct: 101 YLRWDASRPELVAALAHTLASTAVPTPRTPADPGVQLTERELQVLRGMSQGKSNGQIGRE 160

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  +      KL   +R QA+A   R G +
Sbjct: 161 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|51891630|ref|YP_074321.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855319|dbj|BAD39477.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 198

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFL-ELFKKRSSAARN-----LTER 177
             + G + F ++ +  A+  + I   H    ++  + +  L  + +   +      LT R
Sbjct: 80  CIEEGALGFLTKDIEPADLVDAIRAVHRGEPRLHPEVMKRLMVRTAQPHQPSKRDLLTPR 139

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+    G T+ EIAE+L +S  TV  ++ S   KL   +R QA   A+R G +
Sbjct: 140 ELDVLRALAHGLTNREIAERLVISETTVKTHISSILSKLQLTDRTQAALWAVREGLV 196


>gi|271965882|ref|YP_003340078.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509057|gb|ACZ87335.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 219

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194
               +     ++        V      +   +++ A   LT RE   L+L  DG ++ EI
Sbjct: 119 GIRTVATGAALLAPEVTRQLVGRYAARIRPAQATPAETALTPRELEVLRLIADGLSNSEI 178

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  L +S  TV  Y+     KLD  +R+QA+  A R G +
Sbjct: 179 AATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218


>gi|291456580|ref|ZP_06595970.1| putative two-component regulator [Bifidobacterium breve DSM 20213]
 gi|291381857|gb|EFE89375.1| putative two-component regulator [Bifidobacterium breve DSM 20213]
          Length = 268

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 203 PELELLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 262

Query: 229 IRFGYI 234
              G +
Sbjct: 263 YDNGLV 268


>gi|313890015|ref|ZP_07823651.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121606|gb|EFR44709.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 213

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  
Sbjct: 142 PDLHEELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVY 201

Query: 228 AIRFGYI 234
           A R   +
Sbjct: 202 AFRHHLV 208


>gi|295703554|ref|YP_003596629.1| two-component response regulator LiaR [Bacillus megaterium DSM 319]
 gi|294801213|gb|ADF38279.1| two-component response regulator LiaR [Bacillus megaterium DSM 319]
          Length = 208

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +   +K S     LT RE   L L   G T++EIA++L +++ TV  ++ +   KLD  
Sbjct: 133 MMSKMRKPSLPHEELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQ 192

Query: 220 NRIQAIAKAIRFGY 233
           +R QA+  A +   
Sbjct: 193 DRTQAVIYAFKHKL 206


>gi|332712354|ref|ZP_08432281.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332348828|gb|EGJ28441.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 243

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LTERE   L+L  +G ++  IAE+L ++V TV  ++ +   KL A +R QA  +A+R
Sbjct: 179 AYPLTERELEVLRLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALR 238

Query: 231 FGYI 234
            G +
Sbjct: 239 SGLV 242


>gi|148657524|ref|YP_001277729.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148569634|gb|ABQ91779.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 223

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEE 193
           A    +       +V+ +F  L      A           LTERE   L+    G +++E
Sbjct: 119 ARGEALIQPSIARKVVAEFSRLAAGSPPAPERSPLKLPAALTERELDVLKALARGMSNKE 178

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L ++  TV  ++ +   KLD  +R QA+ KA +   +
Sbjct: 179 IAAALVITEGTVKTHISNILAKLDVRDRTQAVLKAQQLRLL 219


>gi|299537605|ref|ZP_07050898.1| two-component response regulator-like protein [Lysinibacillus
           fusiformis ZC1]
 gi|298726974|gb|EFI67556.1| two-component response regulator-like protein [Lysinibacillus
           fusiformis ZC1]
          Length = 215

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H      +    +  +        LT RE   L     G ++ EIA  L ++  TV  +
Sbjct: 125 LHPEATTTLEMDRQESQNAPHLLNPLTPREQDVLAELTKGKSNREIASSLFVTEKTVKTH 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   KL   +R QA   A++ G 
Sbjct: 185 ISNIFTKLQVQDRTQAALYAVKHGL 209


>gi|256380987|ref|YP_003104647.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925290|gb|ACU40801.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + +S    LTERE   L L   G ++ EIA KL LS  TV  ++G    KL+  +R+QA+
Sbjct: 145 RDASVLDALTEREREVLVLIAKGMSNTEIARKLFLSEATVKTHVGRILAKLELRDRVQAV 204

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 205 VLAYETGLV 213


>gi|254471678|ref|ZP_05085079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp.
           JE062]
 gi|211958880|gb|EEA94079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp.
           JE062]
          Length = 233

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 8/234 (3%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           S+     K  S  +   P L ++++ ++    +   I       R    +     +  + 
Sbjct: 5   SDIEAKVKAISEARAAKPVLDIVESYLRRLGASHILITGLPMPNRTIDSLVHRFRWPDER 64

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI-AF 120
                    + GD  L    SG  P++W     +T           L   +   A +   
Sbjct: 65  NGGVERTTLSAGDSALMLGLSGNRPVVWSVSGTDTGNS-------ELFAAIGEGARVMVI 117

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           PV         V+     +      +      C        EL         +L+ RE  
Sbjct: 118 PVDALHPFQAMVVGAGHQIAAEPYDLASLEIVCSAAFRRLFELGVISDQRPGDLSARERR 177

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+L   G T+ EIAE L +S  TV+A+L +A+ KL+A N+   + +A+R+G I
Sbjct: 178 VLELTALGKTAHEIAELLEISQRTVHAHLQNASAKLNASNKTHTVVEALRYGQI 231


>gi|152984552|ref|YP_001346614.1| transcriptional regulator NarL [Pseudomonas aeruginosa PA7]
 gi|150959710|gb|ABR81735.1| two-component response regulator NarL [Pseudomonas aeruginosa PA7]
          Length = 219

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154
              L    +    + F V         V+           +  E ++E            
Sbjct: 76  LRALREAGVDARIVVFTVSDDKGDVVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTL 135

Query: 155 -----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                Q++   L     RS +   LTERE   L+    GY+++ IA KL ++  TV  ++
Sbjct: 136 SPQLTQILAQALRGD-DRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHV 194

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL   +R++A   A+    +
Sbjct: 195 KRVLHKLGMRSRVEAAVWAVENDLV 219


>gi|2765450|emb|CAA75536.1| nitrate/nitrite regulatory protein [Pseudomonas aeruginosa PAO1]
          Length = 216

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154
              L    +    + F V         V+           +  E ++E            
Sbjct: 73  LRALREAGVDARIVVFTVSDDKGDVVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTL 132

Query: 155 -----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                Q++   L     RS +   LTERE   L+    GY+++ IA KL ++  TV  ++
Sbjct: 133 SPQLTQILAQALRGD-DRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHV 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL   +R++A   A+    +
Sbjct: 192 KRVLHKLGMRSRVEAAVWAVENDLV 216


>gi|37523311|ref|NP_926688.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35214315|dbj|BAC91683.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 221

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 146 IIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           ++  H      +   L    +    +  + LT RE   L +  +G  ++ IA +L +S H
Sbjct: 129 LVAIHPDLLGAMLCALPGQPRPPTEAPEQPLTPREVEVLSMLAEGLGNKTIARRLQISEH 188

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  ++GS   KL+A +R +A+   +R G I
Sbjct: 189 TVKFHIGSIFGKLEATSRTEAVTLGVRRGLI 219


>gi|19554120|ref|NP_602122.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391773|ref|YP_227175.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325708|dbj|BAC00329.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41327115|emb|CAF20959.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 212

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 43/109 (39%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   A G           L  +  +   +LT RE   L+L 
Sbjct: 104 AGALGYLLKDAPPSELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +I   L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 164 AGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGLL 212


>gi|229087315|ref|ZP_04219457.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228696017|gb|EEL48860.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 186

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 122 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181

Query: 233 YI 234
            +
Sbjct: 182 LV 183


>gi|229163761|ref|ZP_04291706.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619728|gb|EEK76609.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 186

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 122 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181

Query: 233 YI 234
            +
Sbjct: 182 LV 183


>gi|218440047|ref|YP_002378376.1| GAF modulated LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7424]
 gi|218172775|gb|ACK71508.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 239

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 14/224 (6%)

Query: 11  SSSLQELSPRLHLIQ-NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           + + Q++             A+ + +Y  +  L     +              +    + 
Sbjct: 16  AQNHQQIRSHFMETAGELFNAQRWGIYVYDKHLGDSHIEVK-----GLPDRFVEQYEKIG 70

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D  L +      P   + +           L      G      +  P+       
Sbjct: 71  RQ-VDPVLQYVLKYHAPAH-EQLILTPQEWKQSLLYQNCCSGYDHEHIMTGPIVGRGELI 128

Query: 130 GYVIFTSEF--LMLANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQ 183
           G V F   +       + +    G C  +  +   +     +  S   + LT RE     
Sbjct: 129 GTVHFARTWGTPAFNRDDLAFLSGVCAHLSANLARIELFPQQFTSEVTKKLTPRELQIAS 188

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L   G T+ +I  +L ++ ++V   L     KL+   R Q +A+
Sbjct: 189 LVAQGLTNAQIGRELWITQNSVKQALKRIFRKLNVTARAQMVAR 232


>gi|149180154|ref|ZP_01858659.1| DNA-binding response regulator [Bacillus sp. SG-1]
 gi|148852346|gb|EDL66491.1| DNA-binding response regulator [Bacillus sp. SG-1]
          Length = 216

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 44/85 (51%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H +  + +  F +  +++     +LTERE   L    +G +++EI ++L +S  TV  ++
Sbjct: 126 HPSLTRKLLTFHQQNQRQDRDDNSLTEREREVLGCLVEGLSNKEIGKRLYVSDKTVKIHV 185

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+  +R Q +  A++   +
Sbjct: 186 SNIFKKLNVKSRSQVVIYAVQNKLV 210


>gi|218438401|ref|YP_002376730.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171129|gb|ACK69862.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 249

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  LT+RE   L+L   G  + +IAEKL ++V TV  ++ +   KL   +R QA  +A+R
Sbjct: 185 SDPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRALR 244

Query: 231 FGYI 234
            G +
Sbjct: 245 SGLV 248


>gi|326772328|ref|ZP_08231613.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638461|gb|EGE39362.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 240

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 5/135 (3%)

Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANE-VIIEAHGACYQVIT 158
             +         AG +  +    R            S   +++              + +
Sbjct: 104 FDLDEYAFAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAGSLPS 163

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                         +LT RE   L L   G ++ EIA  L +S  TV  ++G+   KLD 
Sbjct: 164 SEAPAQSSSDPRIDSLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDV 223

Query: 219 VNRIQAIAKAIRFGY 233
            +R+QA+  A   G 
Sbjct: 224 RDRVQAVVVAYETGL 238


>gi|317129803|ref|YP_004096085.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474751|gb|ADU31354.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 210

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LTERE   L+L  +G  ++EIA++L +++ TV  ++ +   KL+  +R QA+  A +
Sbjct: 146 HDQLTEREMEVLKLMTEGKANQEIADELYIALKTVKVHVSNILNKLEVHDRTQAVIYAFK 205

Query: 231 FGYI 234
              I
Sbjct: 206 NNLI 209


>gi|302523631|ref|ZP_07275973.1| response regulator receiver [Streptomyces sp. AA4]
 gi|302432526|gb|EFL04342.1| response regulator receiver [Streptomyces sp. AA4]
          Length = 224

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               Q                 +LT RE   L     G ++ EIAE+L LS+ TV  Y+ 
Sbjct: 137 ALIGQFADRIRPASAAGPGPLEHLTPREREVLVQLARGLSNAEIAEELVLSIETVKTYVS 196

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KLD  +R+QA+  A R G +
Sbjct: 197 RILAKLDLRDRVQAVVLAYRTGLV 220


>gi|158334639|ref|YP_001515811.1| two-component response regulator [Acaryochloris marina MBIC11017]
 gi|158304880|gb|ABW26497.1| two-component response regulator [Acaryochloris marina MBIC11017]
          Length = 222

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 50/94 (53%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L  ++  +         T       ++++ A  L++RE   LQL  +G +++EIA +L L
Sbjct: 129 LDPQIAHKLASMLKSANTPTTAPAHRQTAPATVLSDREREVLQLISEGCSNQEIANQLYL 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S+ T+ +Y+     KL   +R+QA AKA+R G I
Sbjct: 189 SLGTIKSYVRMILNKLSVDDRVQAAAKAVREGLI 222


>gi|156741128|ref|YP_001431257.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232456|gb|ABU57239.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 222

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEE 193
           A    +       +V+ +FL L     +A           LTERE   L+    G +++E
Sbjct: 119 ARGEALIQPSIARKVVAEFLRLAVSAPAAPERMTPKSPNALTERELDVLKALARGMSNKE 178

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L ++  TV  ++ +   KLD  +R QA+ KA +   +
Sbjct: 179 IAAALVITEGTVKTHISNILAKLDVRDRTQAVLKAQQLRLL 219


>gi|291483400|dbj|BAI84475.1| hypothetical protein BSNT_01607 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 215

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               ++   L   K +    +     LT RE   L    +G +++EIA  L +S  TV  
Sbjct: 124 LSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKT 183

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ +   KL+  +R QA   A+++  
Sbjct: 184 HVSNLLAKLEVADRTQAALFAVKYNL 209


>gi|56965136|ref|YP_176868.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911380|dbj|BAD65907.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 209

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +V    +  F       + LT+RE   L+L  +G T+++I+E+L +++ TV  ++    
Sbjct: 127 AKVQGQMISAFTANVPLHQALTKRELEILKLMSEGKTNQQISEELYITIKTVKTHVSHIL 186

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KL+  +R QA+  A++   
Sbjct: 187 AKLEVEDRTQAVIYALKEKL 206


>gi|16077998|ref|NP_388814.1| two-component response regulator YhcY [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308771|ref|ZP_03590618.1| hypothetical protein Bsubs1_05153 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313094|ref|ZP_03594899.1| hypothetical protein BsubsN3_05089 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318020|ref|ZP_03599314.1| hypothetical protein BsubsJ_05033 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322294|ref|ZP_03603588.1| hypothetical protein BsubsS_05134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81814998|sp|O07528|YHCZ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yhcZ
 gi|2226141|emb|CAA74433.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633256|emb|CAB12761.1| two-component response regulator [YhcY] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 214

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               ++   L   K +    +     LT RE   L    +G +++EIA  L +S  TV  
Sbjct: 123 LSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKT 182

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ +   KL+  +R QA   A+++  
Sbjct: 183 HVSNLLAKLEVADRTQAALFAVKYNL 208


>gi|227502186|ref|ZP_03932235.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227077010|gb|EEI14973.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 205

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    L   V+  A             L ++     ++L+ RE   L+  
Sbjct: 97  AGAMGYLLKDSPEEELHEAVLNTAARRRTLAPEVVNLLAQRVGQPEQSLSTRELEILRAL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +++E+A +L +S  TV  +L     KL    R  A+  A     I
Sbjct: 157 ATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205


>gi|256380525|ref|YP_003104185.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924828|gb|ACU40339.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 198

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 2/157 (1%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                 P+    +  +  + +  + + RL         I F            I      
Sbjct: 41  ARFSRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIAAAIAGGARG 100

Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197
            L  +    E   A    +        ++ S     LTERE   L+    G ++ +I  +
Sbjct: 101 YLRWDASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRE 160

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  +      KL   +R QA+A   R G +
Sbjct: 161 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|227497785|ref|ZP_03927971.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832785|gb|EEH65168.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 246

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 4/134 (2%)

Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
             +         AG A  +    R            S   +++  V           +  
Sbjct: 111 FDLDEYAFAGLRAGAAGFLLKDTRPAELAEAIRTVASGEAVVSPRVTRRMLEMFASHLPQ 170

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                        +LT RE   L L   G ++ EIA++L +S  TV  ++G+   KLD  
Sbjct: 171 DGAQDAAEDPRIASLTPREREILVLIAQGMSNSEIADQLVVSATTVKTHVGNVLAKLDVR 230

Query: 220 NRIQAIAKAIRFGY 233
           +R+QA+  A   G 
Sbjct: 231 DRVQAVVVAYETGL 244


>gi|142969|gb|AAA22473.1| germination protein (ttg start codon) [Bacillus subtilis]
 gi|1770055|emb|CAA99550.1| transcriptional regulator of spore coat genes [Bacillus subtilis]
          Length = 74

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + +K   +  +LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R 
Sbjct: 1   MKEKEFQSKPSLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRS 60

Query: 223 QAIAKAIRFG 232
           QA+ + +R G
Sbjct: 61  QAVVELLRMG 70


>gi|295394810|ref|ZP_06805025.1| LuxR family DNA-binding response regulator [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972406|gb|EFG48266.1| LuxR family DNA-binding response regulator [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 204

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 47/110 (42%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  +    L   V     G         + L ++ +    +L+ RE   LQ 
Sbjct: 94  NAGAQGYLLKDAPPEELTRAVRAVNEGRPVMSDEVTVALTRRLTQPRTSLSARELEILQA 153

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G+T++EIA++L +S  TV  +L     KL   NR  A+AKA     I
Sbjct: 154 VATGHTNKEIAQELFISQATVKTHLVHIFDKLGVDNRTSAVAKAREQQLI 203


>gi|238898715|ref|YP_002924396.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466473|gb|ACQ68247.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 235

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 8/191 (4%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            IC + N   +  DI         D  +    S +    W         + +    +   
Sbjct: 40  HICIISNCP-EWFDIYLEFNHQLIDPVVIKALSRVEDFEWDE-NILISSKLALPKVLDQA 97

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKK 166
                  G  F +         +    +  +  N+  I+    +    +     L L++K
Sbjct: 98  KTYDISRGHTFVLHDYKQNLAILSIFDDRPLKTNDFFIDREKMYLLLVKTHQKLLSLYEK 157

Query: 167 RSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                +    L++RE   L  A  G T +EI++ +G+   ++  ++ + T KL A+N   
Sbjct: 158 FEIPTKKNIGLSKRENEILHWASIGKTYQEISKIIGIKECSIKFHMKNITNKLGAINSRH 217

Query: 224 AIAKAIRFGYI 234
           AI  A     +
Sbjct: 218 AIKLAYELKLL 228


>gi|206973784|ref|ZP_03234702.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|222095860|ref|YP_002529917.1| response regulator [Bacillus cereus Q1]
 gi|206747940|gb|EDZ59329.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|221239918|gb|ACM12628.1| response regulator [Bacillus cereus Q1]
          Length = 213

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE   L+    G +++EIA  L ++  TV  ++ +   KL+  +R QA   A++ G
Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207


>gi|46310121|gb|AAS87341.1| putative regulatory protein [uncultured gamma proteobacterium]
          Length = 233

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 13/220 (5%)

Query: 10  KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +S    ++  R L  +   ++A + A +  +       +        ++        + +
Sbjct: 22  ESQGRPDIRARSLQAVAALLEAEHVASFVWDQHEHRSTQPVAFNIDGHHLQAYEQHFHRV 81

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                   +              +          + +             G+      G 
Sbjct: 82  DVVT--PVMRKVRQA------ARVDCHVPRATLVASEFYNDFLRPADMEHGLNVFFFDGN 133

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                +        +      E      +    FL+ F       + L+ RE   ++L  
Sbjct: 134 QDVADLRIWRGRGRVPFSEREEQLLLTLEPY--FLKAFCTVPKQRQALSLREAEVVRLVA 191

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            G + +E+A  LG+S  TV  +L +A  KLD  NR Q   
Sbjct: 192 GGASDKEVARALGISFTTVRTHLKNAMAKLDCRNRTQLAR 231


>gi|83716650|ref|YP_439945.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650475|gb|ABC34539.1| transcriptional regulator, LuxR family [Burkholderia thailandensis
           E264]
          Length = 376

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 12/221 (5%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 158 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 215

Query: 84  LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W     +         +    +R+       +G+ + + +   +      FT+  
Sbjct: 216 SMPVVWDLRQLARDHAARGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 275

Query: 139 LMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                        + A G           +   R  AA  LT  E   L    +G + +E
Sbjct: 276 RSRDWISSATLEQVLALGLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDKE 335

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 336 IGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASSRGLI 376


>gi|76819024|ref|YP_337392.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76583497|gb|ABA52971.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710b]
          Length = 236

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 18  LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 75

Query: 84  LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W   Q      + G       +R+       +G+ + + +   +      FT+  
Sbjct: 76  SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 135

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 136 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 194

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 195 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 236


>gi|239940608|ref|ZP_04692545.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987090|ref|ZP_04707754.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 233

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 33/231 (14%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +           R+           D   +   L     
Sbjct: 22  VDDHPMWRDAVARDLTESGFDVVATAGDGPQAVRRAKAV-----SPDVLVLDLNLPGM-- 74

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++ S   L V +       A +   V+ G        
Sbjct: 75  -PGVQVCKE--------------LVGSHPGLRVLVLSASGEHADVLEAVKSGATGYLLKS 119

Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA------RNLTERETSCL 182
            +++ L  A             G    V+ ++  L    +  A        LT+RET  L
Sbjct: 120 ASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASDEPKAPQLTDRETEVL 179

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 180 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 230


>gi|331266987|ref|YP_004326617.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683659|emb|CBZ01277.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 210

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LNAGARGYMLKTSSADELLNAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|167741857|ref|ZP_02414631.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
          Length = 280

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 62  LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 119

Query: 84  LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W   Q      + G       +R+       +G+ + + +   +      FT+  
Sbjct: 120 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 179

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 180 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 238

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 239 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 280


>gi|322516397|ref|ZP_08069322.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322125130|gb|EFX96523.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 214

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +LT RE   L L   GY ++ IA +L +S+ TV  ++ +   KL+  +R Q
Sbjct: 139 HDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQ 198

Query: 224 AIAKAIRFGYI 234
           A+  A R   +
Sbjct: 199 AVVYAFRHHLV 209


>gi|323489447|ref|ZP_08094676.1| two-component response regulator-like protein [Planococcus
           donghaensis MPA1U2]
 gi|323396941|gb|EGA89758.1| two-component response regulator-like protein [Planococcus
           donghaensis MPA1U2]
          Length = 213

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 143 NEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
             ++   +    +  ++ L    +        LT RE   L     G ++ EIA  L ++
Sbjct: 116 RSLMRGENTLHPKASSELLKAPAEPAPHTINQLTPREQEVLAELTKGKSNREIASALFVT 175

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             TV  ++ +  +KL   +R QA   A++ G 
Sbjct: 176 EKTVKTHISNIFIKLAVQDRTQAALYAVKHGL 207


>gi|229051230|ref|ZP_04194758.1| Response regulator receiver [Bacillus cereus AH676]
 gi|228722128|gb|EEL73545.1| Response regulator receiver [Bacillus cereus AH676]
          Length = 214

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   LQL   G  + EIA+ L +S  TV  ++ +   KLD  +R QA   AIR 
Sbjct: 151 EALTKREIDVLQLLAYGKQNHEIAKILFVSDGTVKTHIHNILQKLDVTDRTQAAVMAIRK 210

Query: 232 GYI 234
             +
Sbjct: 211 KIV 213


>gi|254382632|ref|ZP_04997990.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341535|gb|EDX22501.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 215

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 74/232 (31%), Gaps = 35/232 (15%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   + A  F +           R+      H   LD            G
Sbjct: 4   VDDHPMWRDAVARDLAAAGFDVVATAGDGPEAVRRAGAAAPHVLVLDLN--------LPG 55

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++ ++  L V +       A +   V+ G      + 
Sbjct: 56  MPGVQVCKE--------------LVGANPALRVLVLSASGEHADVLEAVKSGATGY-LLK 100

Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAAR------NLTERETSC 181
                 ++       A       G    V+ ++  L    + AA        LT+RET  
Sbjct: 101 SAGAQELIDAVRRTAAGDPVFTPGLAGLVLGEYRRLATDPAPAAPDEPKAPQLTDRETEV 160

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 161 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|197122287|ref|YP_002134238.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220917070|ref|YP_002492374.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172136|gb|ACG73109.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
 gi|219954924|gb|ACL65308.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 218

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                + +        +    +LT+RE   L+L  +G +++E+A+ LG+SV T  ++   
Sbjct: 132 VARTAMEEAGPAAPGEADPYESLTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREH 191

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   NR + +  AIR G I
Sbjct: 192 VMEKLGVHNRTELVRFAIRKGVI 214


>gi|309789968|ref|ZP_07684544.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227988|gb|EFO81640.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 253

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRS--SAAR-----NLTERETSCLQLAGDGYTSEEIAE 196
           +V++E      +V++ F  L +  +   AA       L+ERE   L+    G +++EIA+
Sbjct: 136 DVVLEEPQVAKRVLSQFRNLPEATATDPAADFPIFTPLSEREIEVLERIAAGGSNKEIAD 195

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L +S  TV  ++ S   KL   +R QA+  A+R G+I
Sbjct: 196 SLSISTQTVKNHISSILRKLSLNDRTQAVLFALRRGWI 233


>gi|315647611|ref|ZP_07900713.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315277050|gb|EFU40391.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 218

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 140 MLANEVIIEAHGACYQVITDFLELF--------KKRSSAARNLTERETSCLQLAGDGYTS 191
             +    ++A       ++  L           +K       LT RE   L    +G ++
Sbjct: 112 PESWHEYLKAIAVDEAPMSRELAFRILKEFSQQEKPDPGNSPLTAREREILGRVAEGLSN 171

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +I+  L +S +TV  +L +   KL   NR+Q    A   G+
Sbjct: 172 RDISVALCISENTVKNHLKNILQKLHLENRVQLTRYAFEQGW 213


>gi|271962958|ref|YP_003337154.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506133|gb|ACZ84411.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           + A            E  +        LT+RE   L+L   G  + EIA++L +S +TV 
Sbjct: 144 MAAKLITEFANMSRKEAERPPQLPVPRLTDREMEVLRLVAKGMNNREIAKQLFISENTVK 203

Query: 207 AYLGSATVKLDAVNRIQAIAKAIR 230
            ++ +   KL   +R++A+  A+R
Sbjct: 204 NHVRNILDKLQLHSRMEAVVYAVR 227


>gi|108805421|ref|YP_645358.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766664|gb|ABG05546.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 232

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLE--LFKKRSSAARNLTE 176
               GYV+ +S    + + +                ++I D             A  LT 
Sbjct: 105 AGAAGYVLKSSPLPRVISALRRLLSGESPLNQELAARLIQDLARRPGGGGNPPPAEELTA 164

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L L   G T+ EIA +L +S  T  +++ +   KL   +R QA+A+A   G I
Sbjct: 165 REREVLVLMARGRTNPEIARELVISRGTAKSHVQNIIRKLGVSDRTQAVARAFELGLI 222


>gi|167646079|ref|YP_001683742.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348509|gb|ABZ71244.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 249

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 65/249 (26%), Gaps = 22/249 (8%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPR--------RQQLICE 53
           +    T   +   Q     L            A   +   L  P           + +  
Sbjct: 5   TALVRTESAACPAQAFRATLGDAARLCGFSQAAYMHLGHRLPRPEDSDAAAMETPRELIS 64

Query: 54  LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113
               D               D          LP  W       + + + +   R      
Sbjct: 65  SGGLDEAL---YRKRGYLAFDPLAVRAAKAFLPFAWSLAD---LADPNARPLARAFEAWG 118

Query: 114 PFAGIAFPVRLGFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169
             +G+  PV+        V F    +     L         G             +    
Sbjct: 119 VRSGLIVPVQDSTAGPALVNFLHAESQSRAALDAGAEAARDGLALLTAARLHAAARASLP 178

Query: 170 AA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   L  RE   L+LA  G T  E A +L LS   V  +L  A  KLD  N+  A+
Sbjct: 179 VHGTSDAGLNAREMQVLRLAAQGLTEMETAARLKLSRRGVQFHLSRAGAKLDTTNKTAAV 238

Query: 226 AKAIRFGYI 234
           A+AI  G I
Sbjct: 239 ARAISLGLI 247


>gi|321314657|ref|YP_004206944.1| two-component response regulator YhcY [Bacillus subtilis BSn5]
 gi|320020931|gb|ADV95917.1| two-component response regulator (YhcY) [Bacillus subtilis BSn5]
          Length = 215

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               ++   L+  K +    +     LT RE   L    +G +++EIA  L +S  TV  
Sbjct: 124 LSTAIMPHVLKHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKT 183

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ +   KL+  +R QA   A+++  
Sbjct: 184 HVSNLLAKLEVADRTQAALFAVKYNL 209


>gi|321313453|ref|YP_004205740.1| two-component response regulator YxjM [Bacillus subtilis BSn5]
 gi|320019727|gb|ADV94713.1| two-component response regulator (YxjM) [Bacillus subtilis BSn5]
          Length = 218

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAE 196
              A    I       ++I++     ++      A   T+RE   LQ    G  +E+IAE
Sbjct: 120 RAAARGEAIFRTVTAAKIISETFRAKQQPHPEELAEPFTKRELEVLQQMAYGLRNEDIAE 179

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KL +S  TV  ++     K +A +R QA+  AIR G +
Sbjct: 180 KLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|239940109|ref|ZP_04692046.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986597|ref|ZP_04707261.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443540|ref|ZP_06582930.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346487|gb|EFE73391.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +    A  
Sbjct: 97  LRAGASGFLLKDAPAAELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEEPVPDALH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G ++ EIA +L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|163790348|ref|ZP_02184780.1| DNA-binding response regulator, LuxR family protein [Carnobacterium
           sp. AT7]
 gi|159874419|gb|EDP68491.1| DNA-binding response regulator, LuxR family protein [Carnobacterium
           sp. AT7]
          Length = 210

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   G +++EIA+ L +++ TV  ++ +   KL+  +R QA   A +
Sbjct: 146 HDDLTNREQEILMLISQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205

Query: 231 FGYI 234
              I
Sbjct: 206 HHLI 209


>gi|269956412|ref|YP_003326201.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305093|gb|ACZ30643.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 234

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDG 188
              +      + A   ++        V      +     + A   LT RE   L+L  +G
Sbjct: 113 PAQLLDGIRTVAAGSALLAPEVTRRLVGRYASRVAPPEPAPADGPLTPRELDVLRLLAEG 172

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIA  L ++  TV  Y+     KLD  +R+QA+  A + G +
Sbjct: 173 LSNAEIAAALVITRETVKTYVSRILTKLDLRDRVQAVVWAYQTGLV 218


>gi|297202491|ref|ZP_06919888.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197709982|gb|EDY54016.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 212

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA-RNLTERETSC 181
               GY++  +    L   V   A G       V +  +   +   +     L+ RE   
Sbjct: 99  AGATGYLLKDAPRDELFTAVRAAAQGRTVLSPAVASRLVSAVRAPGAPGNETLSAREREV 158

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G ++ EIA +L +S  TV  +L     KL   +R  A+A A   G +
Sbjct: 159 LALVAKGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 211


>gi|167584589|ref|ZP_02376977.1| LuxR family transcriptional regulatory protein [Burkholderia
           ubonensis Bu]
          Length = 222

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L        I  +   + A   ++        +           ++    LT RE   L 
Sbjct: 110 LPRGATPGEITAAIEAVAAGLCVLSPEILARLLAEHKAPRQTASAALVEMLTPREIEVLT 169

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +G  ++EIA +L +S +TV  +L S   KL A +R +A+ + +R G +
Sbjct: 170 MLAEGLGNKEIARQLDISDNTVKFHLSSIFGKLGASSRTEAVMQGMRHGLV 220


>gi|21222055|ref|NP_627834.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256786856|ref|ZP_05525287.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770751|ref|ZP_06530129.1| two-component system regulator [Streptomyces lividans TK24]
 gi|4753864|emb|CAB42027.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
 gi|289700950|gb|EFD68379.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 228

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A    + A G   ++I +F  L  +  +  +     LTERET  L 
Sbjct: 113 DASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDDRPRAPLKARVGELTERETEVLA 172

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA++L ++  TV  ++G   VKL   +R QA   A   G +
Sbjct: 173 LIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 223


>gi|256397512|ref|YP_003119076.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363738|gb|ACU77235.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 239

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +        LT+RE   L L   G ++ EIA KL LS  TV  ++G   +KL   +R+Q
Sbjct: 164 SEPAPPELTVLTDREHEVLLLVAQGMSNAEIAGKLFLSEATVKTHVGRILMKLGLRDRVQ 223

Query: 224 AIAKAIRFGYI 234
           A+  A   G +
Sbjct: 224 AVVLAYETGLV 234


>gi|229059933|ref|ZP_04197307.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228719346|gb|EEL70950.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 211

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA  L ++  TV  ++
Sbjct: 127 HPKVTPALLGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +   KL+  +R QA   A++ G
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKHG 209


>gi|145296944|ref|YP_001139765.1| hypothetical protein cgR_2844 [Corynebacterium glutamicum R]
 gi|140846864|dbj|BAF55863.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 212

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 43/109 (39%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   A G           L  +  +   +LT RE   L+L 
Sbjct: 104 AGALGYLLKDAPPSELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +I   L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 164 AGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGLL 212


>gi|15615637|ref|NP_243941.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus halodurans C-125]
 gi|10175697|dbj|BAB06794.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus halodurans C-125]
          Length = 74

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE    +L     T++EIAE+L +S  TV  ++ +   KL    R QA+ + I
Sbjct: 8   PKPLLTKREREVFELLVQDKTTKEIAEQLFISEKTVRNHISNTMQKLGVKGRSQAVIELI 67

Query: 230 RFG 232
           R G
Sbjct: 68  RLG 70


>gi|300782698|ref|YP_003762989.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792212|gb|ADJ42587.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 198

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 2/157 (1%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                 P+    +  +  + +  + + RL         I F            I      
Sbjct: 41  ARYSRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIAAAIAGGARG 100

Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197
            L  +    E   A    +        ++ S     LTERE   L+    G ++ +I  +
Sbjct: 101 YLRWDASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRE 160

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  +      KL   +R QA+A   R G +
Sbjct: 161 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|312112369|ref|YP_003990685.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217470|gb|ADP76074.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1]
          Length = 557

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKR--- 167
                 I+F V    H    V           EV +    G    ++        K+   
Sbjct: 422 FGTVMEISFSVHEHMHGVMAVHMKHLEAAKEAEVYVTALIGIGTMIMKQNNYHGPKQQLN 481

Query: 168 -SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               +  LT RE   L L   G ++ EIA++L +S+HTV  ++ +   K+   +R Q IA
Sbjct: 482 MDMLSERLTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIA 541

Query: 227 KAIRF 231
              + 
Sbjct: 542 LVYQL 546


>gi|307155198|ref|YP_003890582.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306985426|gb|ADN17307.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 248

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L+L   G  + +IAEKL ++V TV  ++ +   KL   +R QA  +A+R 
Sbjct: 185 DPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRALRS 244

Query: 232 GYI 234
           G +
Sbjct: 245 GLV 247


>gi|120555999|ref|YP_960350.1| two component LuxR family transcriptional regulator [Marinobacter
           aquaeolei VT8]
 gi|120325848|gb|ABM20163.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 219

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGAC---- 153
           +   +L    +    + F V          +           M   ++I + H A     
Sbjct: 68  EALRKLREQNVSSRIVMFTVSDQEDDVVAALRAGADGYLLKDMEPEDMIAQLHQAAVGKM 127

Query: 154 ------YQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                   ++ + L      +       +LT RE   L+L  +G +++ I  KL +S  T
Sbjct: 128 VISDRLTTLLAEALRSNKPQQTSRPDFDSLTPREKDILRLIAEGLSNKMIGRKLDISDGT 187

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V  ++     KL+  +R++    A+  G 
Sbjct: 188 VKVHVKHLLKKLNLRSRVEVAVWAVEEGL 216


>gi|118471080|ref|YP_885478.1| response regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118172367|gb|ABK73263.1| putative response regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 243

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 12/150 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT---SEFLMLANE 144
            W  + E     S  ++            G    +  G      +             N 
Sbjct: 92  DWDDVPEFYDSYSGAEVLRPE----GFTNGFLMVLHDGAGDMVGMCQGNMERPDFTPRNR 147

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
             +EA    +      L    +       LT RE   L L   G ++ EI+++L LS  T
Sbjct: 148 STVEAVRPLFTKYVTKLRTRARA-----RLTPREQEILALLRSGLSNAEISDRLYLSPRT 202

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V+ ++     KL   NR+ A  +A     +
Sbjct: 203 VSTHVERVLRKLGVANRVAAAVQATELELL 232


>gi|308235176|ref|ZP_07665913.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 240

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G +++EIA+KL +S+ TV  ++     K+DA +R+QA+  A   G 
Sbjct: 180 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENGL 239

Query: 234 I 234
           +
Sbjct: 240 V 240


>gi|312199008|ref|YP_004019069.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311230344|gb|ADP83199.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 239

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 152 ACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              +++ +F  +      +      +LT RE   L+L  +G  + EIA KL +S +TV  
Sbjct: 150 MASKLMAEFASIARGTDDRPRLHTPHLTARELEVLKLVAEGRANREIARKLFISENTVKN 209

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ +   KL   +R++A+  A+R G 
Sbjct: 210 HVRNILDKLQLHSRMEAVMYAVRQGL 235


>gi|309799719|ref|ZP_07693936.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308116675|gb|EFO54134.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 210

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L + V   A    A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGARGYMLKTSSADELLHAVRKVAVGELAIEQEVSKKVEYHRNHIELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL   +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205


>gi|307710534|ref|ZP_07646970.1| response regulator [Streptococcus mitis SK564]
 gi|307618687|gb|EFN97827.1| response regulator [Streptococcus mitis SK564]
          Length = 210

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGAKGYMLKTSSAGELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|308172920|ref|YP_003919625.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605784|emb|CBI42155.1| two-component response regulator [YhcY] [Bacillus amyloliquefaciens
           DSM 7]
          Length = 214

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT RE   LQ    G +++EIA  L +S  TV  ++ +   KL+  +R QA   A++
Sbjct: 148 QLTPREKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVK 205


>gi|182439176|ref|YP_001826895.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779828|ref|ZP_08239093.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178467692|dbj|BAG22212.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660161|gb|EGE45007.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 234

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 33/231 (14%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +           R+           D   +   L     
Sbjct: 23  VDDHPMWRDAVARDLTESGFDVVATAGDGPQAVRR-----AGAVSPDVLVLDLNLPGM-- 75

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++ S   L V +       A +   V+ G        
Sbjct: 76  -PGVQVCKE--------------LVGSHPGLRVLVLSASGEHADVLEAVKSGATGYLLKS 120

Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA------RNLTERETSCL 182
            +++ L  A             G    V+ ++  L    +  A        LT+RET  L
Sbjct: 121 ASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASNEPKAPQLTDRETEVL 180

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 181 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 231


>gi|163848766|ref|YP_001636810.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526715|ref|YP_002571186.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163670055|gb|ABY36421.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450594|gb|ACM54860.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 218

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           +  +  A       H      +       +   +    LT RE   L+L   G +++EIA
Sbjct: 114 AHAIRAACRGEAVLHPDVAAKLMQEFNTPRPNEAPVEQLTPREMDVLRLVAKGMSNKEIA 173

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E L +S  TV  ++ +   KL   +R Q    A+R   +
Sbjct: 174 ETLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKRLV 212


>gi|332978141|gb|EGK14877.1| transcriptional regulatory protein DegU [Desmospora sp. 8437]
          Length = 92

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L     T++EIA++L +S  TV  ++ +   KL+   R QA+ + +R G
Sbjct: 30  LTNREREVFELLVQDKTTKEIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELVRLG 88


>gi|315649841|ref|ZP_07902924.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315274815|gb|EFU38196.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 240

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G +++ I E L +S  TV  ++ S   K++  +R QA+  +I++G
Sbjct: 177 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYG 236

Query: 233 YI 234
           ++
Sbjct: 237 WV 238


>gi|311032377|ref|ZP_07710467.1| two-component response regulator LiaR [Bacillus sp. m3-13]
          Length = 210

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++       +        LT RE   L L   G T++EIA++L +++ TV  ++ +
Sbjct: 129 VAGKMMQKMRRKTE--ILPHEELTNREMEILLLMTQGKTNQEIADELFIALKTVKVHVSN 186

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R QA+  A +   +
Sbjct: 187 ILAKLQVQDRTQAVIYAFKHSLV 209


>gi|310644345|ref|YP_003949104.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309249296|gb|ADO58863.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 240

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G +++ I E L +S  TV  ++ S   K++  +R QA+  +I++G
Sbjct: 177 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYG 236

Query: 233 YI 234
           ++
Sbjct: 237 WV 238


>gi|308071115|ref|YP_003872720.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305860394|gb|ADM72182.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa
           E681]
          Length = 240

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G +++ I E L +S  TV  ++ S   K++  +R QA+  +I++G
Sbjct: 177 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYG 236

Query: 233 YI 234
           ++
Sbjct: 237 WV 238


>gi|261409652|ref|YP_003245893.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329928696|ref|ZP_08282545.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|261286115|gb|ACX68086.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328937477|gb|EGG33895.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 240

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G +++ I E L +S  TV  ++ S   K++  +R QA+  +I++G
Sbjct: 177 PLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYG 236

Query: 233 YI 234
           ++
Sbjct: 237 WV 238


>gi|289523811|ref|ZP_06440665.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502955|gb|EFD24119.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 211

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 8/155 (5%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLAN 143
               I           L  ++    L  A +              +            + 
Sbjct: 50  DVALIDIRMPGIDGVTLVRQIRQEELKVACLMLTSYDAQQYVLASLRAGAKGYILKTASP 109

Query: 144 EVIIEAHGACY----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           E ++ A          +  +     ++      +L+ RE   L LAG G +S+EIA KL 
Sbjct: 110 EELLRAIEIVASQGVYLDKEVAAAVEEPGFTPESLSPREREVLLLAGRGESSKEIASKLY 169

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TV  +L S   KL A N+ +A+  A+++G +
Sbjct: 170 ISERTVQTHLASIYDKLGARNKTEALLLALKYGVV 204


>gi|262275905|ref|ZP_06053714.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP
           101886]
 gi|262219713|gb|EEY71029.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP
           101886]
          Length = 209

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVI--------- 157
           L         +   V         ++       L  +   E         +         
Sbjct: 71  LRSDGCTAVIVILTVSDSPSDIHAIVQAGADGYLLKDSEPEELVMQLKSAMTGEKAYSEQ 130

Query: 158 -TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
              +LE  +  +S    LTERE   L+L   G  +++IAE L +S  TV  +L +   KL
Sbjct: 131 VRTYLEKSRDHTSPLSVLTERERQILRLVAKGLRNKQIAETLYISEATVKVHLKNLLKKL 190

Query: 217 DAVNRIQAIAKAIRF 231
              +R+ A    +  
Sbjct: 191 GVESRVAATVLYLEH 205


>gi|159897239|ref|YP_001543486.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890278|gb|ABX03358.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 240

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTER 177
                 G +   +    + NE ++       +V+  F EL       +  SS    LT R
Sbjct: 109 DPTQLVGMIRDVAHGRYVINESVMSKPHVATRVLNQFRELSNVANNSEDTSSMFAPLTSR 168

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L     G +++EIA +L +S  TV  ++ S   KL   +R  A+  AI+ G+I
Sbjct: 169 EIEILDCIARGLSNKEIANQLSISGQTVKNHITSILSKLQVNDRTMAVIHAIQQGWI 225


>gi|253573655|ref|ZP_04850998.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847183|gb|EES75188.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 215

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +A++    +     +++ +F  + ++ S     LT RE   L     G T+ EIA  L
Sbjct: 117 RAIASDEAPLSSELALRILQEF-PVNRRTSGEQPPLTAREREILGWVAQGMTNREIAGVL 175

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S  TV  +L +   KL   NR+Q    A+  G+I
Sbjct: 176 HISDQTVKNHLKNILQKLHLENRVQLTRYALEQGWI 211


>gi|325920818|ref|ZP_08182719.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325548715|gb|EGD19668.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|291444045|ref|ZP_06583435.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346992|gb|EFE73896.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 214

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 33/231 (14%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +           R+           D   +   L     
Sbjct: 3   VDDHPMWRDAVARDLTESGFDVVATAGDGPQAVRRAKAV-----SPDVLVLDLNLPGM-- 55

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++ S   L V +       A +   V+ G        
Sbjct: 56  -PGVQVCKE--------------LVGSHPGLRVLVLSASGEHADVLEAVKSGATGYLLKS 100

Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA------RNLTERETSCL 182
            +++ L  A             G    V+ ++  L    +  A        LT+RET  L
Sbjct: 101 ASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASDEPKAPQLTDRETEVL 160

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 161 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 211


>gi|295399431|ref|ZP_06809413.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110010|ref|YP_003988326.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978897|gb|EFG54493.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215111|gb|ADP73715.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1]
          Length = 74

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +
Sbjct: 8   PKPLLTKREREVFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELL 67

Query: 230 RFG 232
           R G
Sbjct: 68  RMG 70


>gi|163848177|ref|YP_001636221.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526082|ref|YP_002570553.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163669466|gb|ABY35832.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449961|gb|ACM54227.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 236

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETS 180
                  +   +    L N+ ++       +V+  F EL     +  +S    LT RE  
Sbjct: 113 PEELVHMIREVARGRYLINDAVLAHPNVAARVLHQFRELAATDEEDGASLFAPLTSREIE 172

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L     G +++EIA +L +S  TV  ++ S   KL   +R  A+  AI+ G+I
Sbjct: 173 ILDCIARGLSNKEIASELSISSQTVKNHITSILAKLQVNDRTMAVIVAIKKGWI 226


>gi|220914117|ref|YP_002489426.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219860995|gb|ACL41337.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 222

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 46/109 (42%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    L   V+  A G           L  + S+    LT RE   L+L 
Sbjct: 107 AGASGYMLKDAPPEQLRQAVLQAAAGGTVLAPRAAALLMDRISNPGTALTPREVQLLELL 166

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++  IA++L +S  TV  +L     KL   NR  AIA A +   I
Sbjct: 167 ATGLSNRAIAKQLFVSEATVKTHLVHIYGKLGVDNRTAAIAAATQRRII 215


>gi|146320266|ref|YP_001199977.1| response regulator [Streptococcus suis 98HAH33]
 gi|223933224|ref|ZP_03625215.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|253751279|ref|YP_003024420.1| response regulator protein [Streptococcus suis SC84]
 gi|253753180|ref|YP_003026320.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755003|ref|YP_003028143.1| response regulator protein [Streptococcus suis BM407]
 gi|330832254|ref|YP_004401079.1| response regulator [Streptococcus suis ST3]
 gi|145691072|gb|ABP91577.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Streptococcus suis 98HAH33]
 gi|223898154|gb|EEF64524.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|251815568|emb|CAZ51151.1| response regulator protein [Streptococcus suis SC84]
 gi|251817467|emb|CAZ55208.1| response regulator protein [Streptococcus suis BM407]
 gi|251819425|emb|CAR44899.1| response regulator protein [Streptococcus suis P1/7]
 gi|292557848|gb|ADE30849.1| regulatory protein, LuxR: Response regulator receiver
           [Streptococcus suis GZ1]
 gi|319757560|gb|ADV69502.1| response regulator [Streptococcus suis JS14]
 gi|329306477|gb|AEB80893.1| response regulator [Streptococcus suis ST3]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G         +++ ++ A   +     A    +   +E  K+      +LT RE   L L
Sbjct: 99  GARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTL 158

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              GY ++ IA++  +S+ TV  ++ +   KL   +R QA+  A + G +
Sbjct: 159 LAKGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLV 208


>gi|288922222|ref|ZP_06416420.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288346413|gb|EFC80744.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 239

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +  + A +LT RE   L+L  +G  + EIA KL +S +TV  ++ +   KL   +R++
Sbjct: 166 EDRPRAHAPHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRME 225

Query: 224 AIAKAIRFGY 233
           A+  A+R G 
Sbjct: 226 AVMYAVRQGL 235


>gi|186681901|ref|YP_001865097.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464353|gb|ACC80154.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 240

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L    ++      LT+RE   L+L   G ++ +IAEKL ++V TV  ++ +   KL A
Sbjct: 164 EALASEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCA 223

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QA  +A+R G +
Sbjct: 224 DDRTQAAVRALRSGLV 239


>gi|159027236|emb|CAO89331.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 234

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 42/79 (53%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           VI   ++   ++      LTERE   L L   G+++ +IA++L +++ TV  ++ +   K
Sbjct: 155 VIIQGVDPEHRQLLENVPLTERELEILALIVGGFSNAQIADRLYITIGTVKTHVRNILNK 214

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R QA   A+R G +
Sbjct: 215 LSVDDRTQAAVLALRSGLV 233


>gi|258626786|ref|ZP_05721594.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580926|gb|EEW05867.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 224

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 72/238 (30%), Gaps = 30/238 (12%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S        S+S+ +    L      I       ++I          + IC  H +   
Sbjct: 9   LSNQLRCADNSTSIHDWFDELK---KDISFE----FSILGVFGEHYSLEPIC--HGFSPT 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                        D F+  F      I+   +      +   +L   L G       I  
Sbjct: 60  QFSTCFGNKRPENDPFVAAFQQSGQGIM-ALMDPYNHPDYGKRLL--LAGQHGEKKAIFL 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLT 175
                                +++ I   +     +      + ++            LT
Sbjct: 117 TSFGN-------------RHPSSDEIDTLYLLTPHLYLASDSIAQQSQQLHLPPPLNPLT 163

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +RE   L     G ++ EI+  L +S  TV  +L +   KL+  NR  AIAKAI  G+
Sbjct: 164 DRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|293364822|ref|ZP_06611539.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703071|ref|ZP_07640018.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291316272|gb|EFE56708.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623464|gb|EFO02454.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 210

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVI--IEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L + +        A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LNAGAKGYMLKTSSADELLHALRKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|239992911|ref|ZP_04713435.1| two-component system regulatory protein [Alteromonas macleodii ATCC
           27126]
          Length = 214

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTE+E   L+L   GY+++EIA+ +  S  T+   + S   KL   +R +A+ KA+  
Sbjct: 152 EPLTEKEVEILRLIAAGYSNKEIADAMFKSTGTIKNQVSSIMAKLGVRDRTRAVLKALEQ 211

Query: 232 GYI 234
           G I
Sbjct: 212 GVI 214


>gi|225182003|ref|ZP_03735435.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167288|gb|EEG76107.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 217

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               ++  +F  L  +       L+ RET  L L   G +++EI ++L +S  TV  ++ 
Sbjct: 133 RISEKMCGEFQRLALRNVH-DEPLSRRETDVLTLIARGKSNKEIGDELYISEKTVKNHIT 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   K+   +R QA   A++   +
Sbjct: 192 NIFRKIQVTDRTQAALYAVKNRIV 215


>gi|311114585|ref|YP_003985806.1| two component system response regulator [Gardnerella vaginalis ATCC
           14019]
 gi|310946079|gb|ADP38783.1| two component system response regulator [Gardnerella vaginalis ATCC
           14019]
          Length = 243

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G +++EIA+KL +S+ TV  ++     K+DA +R+QA+  A   G 
Sbjct: 183 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENGL 242

Query: 234 I 234
           +
Sbjct: 243 V 243


>gi|269219961|ref|ZP_06163815.1| two-component system response regulator [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269210597|gb|EEZ76937.1| two-component system response regulator [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 230

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              ++  +   +          LTERE   L+L   G T+ EIA+ L ++  T+  ++G 
Sbjct: 142 LVEKLAKEATAMRATDPHILDGLTEREIEVLKLVAQGLTNGEIAKTLTVAEATIKTHIGH 201

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A +R+QA+  A   G +
Sbjct: 202 IFYKLGARDRVQAVVLAYEAGLV 224


>gi|226366304|ref|YP_002784087.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226244794|dbj|BAH55142.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 530

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 2/128 (1%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
           RL      + G+  P R                  A    ++A      +         +
Sbjct: 395 RLLAAAEAYQGLLEP-RPHRPALDARGAADRLGEEARAGRLDAESVAAVLAAAGQR-QSR 452

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+     LT+RE   L+L   G +++EIA +L ++  T   ++     KL   NR QA  
Sbjct: 453 RTPWPAGLTDREVEILRLVAQGRSNKEIAAELFIAEKTARNHVERVYAKLGVNNRTQAGL 512

Query: 227 KAIRFGYI 234
            AI  G +
Sbjct: 513 AAIDRGLV 520


>gi|322390996|ref|ZP_08064501.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321142300|gb|EFX37773.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 210

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A R
Sbjct: 142 HDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFR 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|297626683|ref|YP_003688446.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922448|emb|CBL57021.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 217

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           +G              V   +    L +  +               E+     +    LT
Sbjct: 98  SGFILKNSDPTELVAAVRAVANGDALLSPSVTLRVIRAMAQGHAPREVTPGADAELARLT 157

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+    G ++ EIA +L +S  TV  ++ +   KL   +R+QA+A A + G +
Sbjct: 158 DREVEVLRALARGLSNAEIAAELFVSEATVKTHVSNVLSKLGLRDRVQAVAHAYQHGLV 216


>gi|88807485|ref|ZP_01122997.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           WH 7805]
 gi|88788699|gb|EAR19854.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           WH 7805]
          Length = 227

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDFLELFKKRSSAARNLTERET 179
           L     G +  +S    +  + I                       +R      L+ERE 
Sbjct: 114 LDAFAEGVIFISSLGKGIDGDFIRSLSAIAEGGNYYPQDVQTAAGYERIEVLPELSEREI 173

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             L++   G T++EIA+ L +S  TV  ++ S   K+   +R QA+ KAI+ G 
Sbjct: 174 EVLKVLSCGMTNKEIADTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAGI 227


>gi|325914881|ref|ZP_08177216.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538972|gb|EGD10633.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|89896875|ref|YP_520362.1| hypothetical protein DSY4129 [Desulfitobacterium hafniense Y51]
 gi|89336323|dbj|BAE85918.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 215

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 41/96 (42%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +A   I         ++       K  + +A NLTERE   L+    GYT++EI E L
Sbjct: 118 RDVARGEIYLDSSLAQNLVKSMYSPRKDNNRSASNLTEREKEVLRYIALGYTNKEIGESL 177

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +SV TV  +      K+    R   +  AI  GYI
Sbjct: 178 SVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYI 213


>gi|297201227|ref|ZP_06918624.1| two-component system regulator [Streptomyces sviceus ATCC 29083]
 gi|197712910|gb|EDY56944.1| two-component system regulator [Streptomyces sviceus ATCC 29083]
          Length = 227

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183
                       ++A    + A G   ++I +F  L  +  +  +     LTERET  L 
Sbjct: 112 DASAEQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDHRPRAPLKTRVGELTERETEVLA 171

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA +L ++  TV  ++G   VKL   +R QA   A   G +
Sbjct: 172 LIAQGLSNAEIAGRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 222


>gi|262173265|ref|ZP_06040942.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
 gi|261890623|gb|EEY36610.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
          Length = 224

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 72/238 (30%), Gaps = 30/238 (12%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S        S+S+ +    L      I       ++I          + IC  H +   
Sbjct: 9   LSNQLRCADNSTSIHDWFDELK---KDISFE----FSILGIFGEHYSLEPIC--HGFSPT 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                        D F+  F      I+   +      +   +L   L G       I  
Sbjct: 60  QFSTCFGNKRPENDPFVAAFQQSGQGIM-ALMDPYNHPDYGKRLL--LAGQHGEKKAIFL 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLT 175
                                +++ I   +     +      + ++            LT
Sbjct: 117 TSFGN-------------RHPSSDEIDTLYLLTPHLYLASDSIAQQSQQLHLPPPLNPLT 163

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +RE   L     G ++ EI+  L +S  TV  +L +   KL+  NR  AIAKAI  G+
Sbjct: 164 DRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|302550305|ref|ZP_07302647.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467923|gb|EFL31016.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +       
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLD 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|167819038|ref|ZP_02450718.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
          Length = 267

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 49  LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 106

Query: 84  LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W   Q      + G       +R+       +G+ + + +   +      FT+  
Sbjct: 107 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 166

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 167 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 225

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 226 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 267


>gi|86158419|ref|YP_465204.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774930|gb|ABC81767.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 218

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                + +        +    +LT+RE   L+L  +G +++E+A+ LG+SV T  ++   
Sbjct: 132 VARTAMEEAGPAAPGEADPYESLTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREH 191

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   NR + +  AIR G I
Sbjct: 192 VMEKLGVHNRTELVRFAIRKGVI 214


>gi|315612573|ref|ZP_07887486.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315554|gb|EFU63593.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 210

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|320010128|gb|ADW04978.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 219

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L+L  +G ++ EIA  L +S  TV  ++     KL   +R+QA+  
Sbjct: 152 TDPDIPLTPRELEVLRLIAEGLSNSEIAASLVISRETVKTFVSRILTKLGLRDRVQAVVY 211

Query: 228 AIRFGYI 234
           A R G +
Sbjct: 212 AYRQGLV 218


>gi|257054540|ref|YP_003132372.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584412|gb|ACU95545.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 198

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 2/157 (1%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                 P+    +  +  + +  + + RL         I F            I      
Sbjct: 41  ARYSRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIAAAIAGGARG 100

Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197
            L  +    E   A    +        ++ S     LTERE   L+    G ++ +I  +
Sbjct: 101 YLRWDASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRE 160

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  +      KL   +R QA+A   R G +
Sbjct: 161 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|256826588|ref|YP_003150547.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582731|gb|ACU93865.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 261

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              ++I  F+    + S+AA  L   T+RE   L+    G ++EEIA+ L +S  TV  +
Sbjct: 172 ITRRLIETFVSSRPRTSAAAGGLVDLTDREREILRFVARGMSNEEIADDLVISPATVKTH 231

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     KLDA +R Q +  A   G +
Sbjct: 232 LARIMGKLDAHDRAQLVVAAYESGLV 257


>gi|284034837|ref|YP_003384768.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283814130|gb|ADB35969.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTS 191
           +      +     ++        V      +    ++ A   LT RE   L L  DG ++
Sbjct: 116 LLQGIRTVAGGAALLAPEVTRQLVGRYAARVRPAENAPAEVPLTPRELEVLLLMADGLSN 175

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA  L +S  TV  Y+     KLD  +R+QA+  A R G +
Sbjct: 176 SEIAATLVISHETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218


>gi|237653295|ref|YP_002889609.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237624542|gb|ACR01232.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 243

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + +      +   +  A       +           +    L+ RE   L+    G +++
Sbjct: 137 LLSGVRSSASRAAMGGAIAPAPGALARSAPAAGAEPAELEKLSPREREILRFIARGQSNK 196

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           EIA  L L+  TV  ++ +   KL+  +R+QA   A+  G 
Sbjct: 197 EIARALELAESTVKIHVQNMLRKLNLSSRVQAAVFAVENGL 237


>gi|307942529|ref|ZP_07657877.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307774168|gb|EFO33381.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 278

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 66/235 (28%), Gaps = 22/235 (9%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + S+SL+        +   + A  FA Y  +++      +       N   D+  +    
Sbjct: 43  RLSNSLELRQRVGERLLGLLNADFFASYVADTSGRGFASR----VSVNMAPDNLKLYET- 97

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              Y D       S         +  ++ +E   +             G+ +    G   
Sbjct: 98  YFQYRDPITQKLASRRQAAHVNEVIAQSDLE-KTEFYNDFLQRDGLHHGVNYHAHDGSVH 156

Query: 129 NGYVIFTSEFLMLA--NEVIIEAHGACYQ---VITDFLELFK-----------KRSSAAR 172
            G +               I             +       +           +  + A 
Sbjct: 157 VGDLRVWRSRAKETFGRREIDILQAVGTAFSNALIQHRRFAENLRQLDPLHTLESLAEAL 216

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +LT RE   L         + IA+ LG+S+ TV  ++     K    NR   +AK
Sbjct: 217 SLTPREAEILSCMTHYGRDQHIADHLGVSITTVRTHIQRLFQKAGVNNRTALVAK 271


>gi|291300839|ref|YP_003512117.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570059|gb|ADD43024.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 1/99 (1%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194
               + +   +++       V      +     +     LT RE   L+   +G ++ EI
Sbjct: 119 GIRTVASGAALLDPDVTRQLVGRYAARIRPAEDTPDDTALTPRELEVLRHIANGLSNSEI 178

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A  L +S  TV  Y+     KL   +R+QA+  A R G 
Sbjct: 179 AATLVISHETVKTYVSRILTKLGLRDRVQAVVYAYRRGL 217


>gi|325510834|gb|ADZ22470.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 217

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++TERE   LQ    G  S+EIA  +G+S  TV A+L +   KL   +R +A+AKAI  G
Sbjct: 152 SITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKG 211

Query: 233 YI 234
            I
Sbjct: 212 II 213


>gi|15896670|ref|NP_350019.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026518|gb|AAK81359.1|AE007840_3 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
          Length = 217

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++TERE   LQ    G  S+EIA  +G+S  TV A+L +   KL   +R +A+AKAI  G
Sbjct: 152 SITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKG 211

Query: 233 YI 234
            I
Sbjct: 212 II 213


>gi|228996994|ref|ZP_04156626.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|228762735|gb|EEM11650.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 191

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+ +   + +        L+ERE   L+L   G T+ EIAE L +S  TV  ++ 
Sbjct: 100 RVAARVVNEIRAMKQASPDPFSELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVS 159

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL  ++R +A   A   G+
Sbjct: 160 NILSKLHMLDRTKAAVFAWEQGF 182


>gi|209515006|ref|ZP_03263875.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209504632|gb|EEA04619.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 222

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L  +     I  S   + A   ++        +        K        LT RE   L 
Sbjct: 110 LPRNAMPAEIVASIEAVAAGLCVLTPDILARLLAGTRQPRQKASGEPFEALTSREIEVLA 169

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  DG  ++EIA  L +S +TV  +L +   KL A NR +A+   +R G+I
Sbjct: 170 MLADGLGNKEIARHLDISDNTVKFHLSAIFGKLGATNRTEAVMLGMRHGFI 220


>gi|17231260|ref|NP_487808.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907780|ref|YP_322076.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|3603297|gb|AAC82626.1| two-component response regulator OrrA [Nostoc sp. PCC 7120]
 gi|17132902|dbj|BAB75467.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701505|gb|ABA21181.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 240

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G ++ +IAEKL ++V TV  ++ +   KL A +R QA  +A+R G
Sbjct: 178 PLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 237

Query: 233 YI 234
            +
Sbjct: 238 LV 239


>gi|309792814|ref|ZP_07687256.1| regulatory protein LuxR [Oscillochloris trichoides DG6]
 gi|308225126|gb|EFO78912.1| regulatory protein LuxR [Oscillochloris trichoides DG6]
          Length = 464

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            ++ERE   L+L   G ++++IA++L +SV+TV  ++ +   K   ++R +A   AI  G
Sbjct: 6   PISEREREILKLVATGASNQQIAQQLNISVNTVKVHVRNIFSKTGVMSRTEATIYAINHG 65

Query: 233 YI 234
           ++
Sbjct: 66  FV 67


>gi|229015963|ref|ZP_04172924.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229022180|ref|ZP_04178730.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739111|gb|EEL89557.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228745323|gb|EEL95364.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|229074417|ref|ZP_04207449.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229095286|ref|ZP_04226278.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229101393|ref|ZP_04232137.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228682098|gb|EEL36231.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228688145|gb|EEL42031.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228708701|gb|EEL60842.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|229114235|ref|ZP_04243656.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228669255|gb|EEL24676.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|229010064|ref|ZP_04167278.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229136711|ref|ZP_04265367.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228646748|gb|EEL02927.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228751197|gb|EEM01009.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|229187725|ref|ZP_04314860.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228595717|gb|EEK53402.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|227506297|ref|ZP_03936346.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197109|gb|EEI77157.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 205

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + V+  A G           L ++ +     L+ RE   L+  
Sbjct: 97  AGALGYLLKDAPEQALHDAVLATAAGKRTLAPEVAALLAERITRPEVALSSRELEILEAL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +++E+A++L +S  TV  +L     KL    R  A+  A     I
Sbjct: 157 ATGKSNKELAQRLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205


>gi|225862611|ref|YP_002747989.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102]
 gi|225789899|gb|ACO30116.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|118476319|ref|YP_893470.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415544|gb|ABK83963.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 216

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 152 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 211

Query: 233 YI 234
            +
Sbjct: 212 LV 213


>gi|312128700|ref|YP_003993574.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778719|gb|ADQ08205.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 211

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLT 175
            L F  +GY++ +S+   + N ++    G           +        K+     +NLT
Sbjct: 94  SLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYISDVLKRTSKQLLEKTQNLT 153

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ERE    +L   GY+++EIA  L +S  TV  Y+ S   KL+  NR Q    
Sbjct: 154 ERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|222530583|ref|YP_002574465.1| LuxR family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457430|gb|ACM61692.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 211

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLT 175
            L F  +GY++ +S+   + N ++    G           +        K+     +NLT
Sbjct: 94  SLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYISDVLKRTSKQLLEKTQNLT 153

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ERE    +L   GY+++EIA  L +S  TV  Y+ S   KL+  NR Q    
Sbjct: 154 ERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|186685215|ref|YP_001868411.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467667|gb|ACC83468.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 239

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   LQL  +G ++  IAE+L ++V TV  ++ +   KL A +R QA  +A+R G 
Sbjct: 178 LTERELEVLQLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 237

Query: 234 I 234
           +
Sbjct: 238 V 238


>gi|147678376|ref|YP_001212591.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274473|dbj|BAF60222.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 223

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +++ + ++   +R        LT RE   LQL  +G +++EIA KL +++ TV A++
Sbjct: 135 IANELLVNLVQGTPRRQHPKNLPLLTLREKEVLQLIVNGLSNKEIAGKLNITLRTVKAHV 194

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S  +KL+  +R QA   AI+   +
Sbjct: 195 SSILMKLNVNDRTQAAVLAIQENLV 219


>gi|229543630|ref|ZP_04432690.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
 gi|229328050|gb|EEN93725.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
          Length = 74

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREKEVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|134298790|ref|YP_001112286.1| response regulator receiver protein [Desulfotomaculum reducens
           MI-1]
 gi|134051490|gb|ABO49461.1| response regulator receiver protein [Desulfotomaculum reducens
           MI-1]
          Length = 119

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+S    LT RE   L+L   G +++ IA++L +S  TV  +L S   KL   NR +A  
Sbjct: 52  RTSNVNQLTNREFELLKLIAKGISNKAIAKQLFISEKTVKNHLTSIYSKLGVTNRTEATL 111

Query: 227 KAI 229
            A+
Sbjct: 112 YAV 114


>gi|104782168|ref|YP_608666.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111155|emb|CAK15875.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 219

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 10/220 (4%)

Query: 11  SSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +++L EL    L     ++ A   A Y I++      +Q     L +             
Sbjct: 2   ANALDELGRYCLQAFSQQVPASLAAFYRIDAG-----QQACDFLLQDLQAPMHARYLE-R 55

Query: 70  ETYGDDFLF-HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF--PVRLGF 126
               D     H  +   P++        + +  G+   +          +     VR   
Sbjct: 56  YRAFDPLQPGHCLAIGGPVVSLRQGLAHLPQDQGRTYRQFLAQHQVVDVVEIIAQVRGQP 115

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                ++  +      +  +         +          +++    LT RE    +L  
Sbjct: 116 RAGISLLRCASLGEFRDAELQRLLPLHGLMQLALASQPLAQNAVPIALTPRERQIAELLR 175

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            G +++ IA  L + + TV  +L +   KL   NR + +A
Sbjct: 176 QGASNKLIARALEVGLPTVKTHLINLFRKLGVSNRTELVA 215


>gi|58583150|ref|YP_202166.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427744|gb|AAW76781.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 214

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 139 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 198

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 199 RDRTRAVLKAFELQLV 214


>gi|89100033|ref|ZP_01172903.1| response regulator [Bacillus sp. NRRL B-14911]
 gi|89085267|gb|EAR64398.1| response regulator [Bacillus sp. NRRL B-14911]
          Length = 210

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L L  +G T++EIA++L +++ TV  ++ +   KL   +R QA+  A 
Sbjct: 145 PHEELTSREMEILLLMTEGKTNQEIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAF 204

Query: 230 RFGY 233
           +   
Sbjct: 205 KHSL 208


>gi|116672676|ref|YP_833609.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116612785|gb|ABK05509.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 250

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++R      LT RE   L+   +G ++ EIA +  LS  TV  ++     KL   +R+Q
Sbjct: 173 EQQRDPLLEALTPREMEMLEAMAEGLSNAEIAHRFFLSEATVKTHVRRILAKLHLRDRVQ 232

Query: 224 AIAKAIRFGYI 234
           A+  A   G +
Sbjct: 233 AVVYAYETGLV 243


>gi|126726482|ref|ZP_01742323.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126704345|gb|EBA03437.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 273

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 68/229 (29%), Gaps = 10/229 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-QLICELHNYDLDSGDIPNIL 68
           +++S++E+                                Q I  L N+  +  +     
Sbjct: 30  EATSIEEVWGAHTATMESYGFDRLLYGFTRYRTARSFGDLQDILTLSNHPKEYLERYLGG 89

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFP---V 122
                   +   +  +    W+ I E+                   +    G +     V
Sbjct: 90  TLYLHGPMVRWLSQNVGACSWRWIDEQRAAGKLSEREIEVHEFNKSMGLVGGYSISFKDV 149

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERET 179
                    +           E I +  G+    I   + L   +   A   R LT+R+ 
Sbjct: 150 SDRAKGAIALTARPGLSQDDVEEIWKRDGSDIVTINKVMHLKVTQLPYAGLRRPLTKRQI 209

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             L+   DG T+ + A  +GL+  T+  +L  A   LD     QA+ KA
Sbjct: 210 EVLEWVADGKTTADAATIMGLTNATIEKHLRLARDVLDVDTTAQAVMKA 258


>gi|284009120|emb|CBA76124.1| LuxR family transcriptional regulatory protein [Arsenophonus
           nasoniae]
          Length = 243

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 9/192 (4%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            +  + +   +  +          D  +    + L P  W    +   I    ++   ++
Sbjct: 43  DMIIISDLSDELVNNYLNQKTQNIDPVIIKALNQLAPFSWDENIKINSIWPVKKVFEPMK 102

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF-TSEFLMLANEVII-----EAHGACYQVITDFLEL 163
              +  +G AF +    +    +     +FL+   E  I     E  G         L L
Sbjct: 103 MLNI--SGYAFVLHDHLNNLALLSLYMDKFLIKDIEFFIKSNKGELQGLLIHTHEMLLSL 160

Query: 164 FKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           ++  ++  + + + RE+  L     G T  EI   L +S +TV  ++G+   KL  +N  
Sbjct: 161 YQNENTTEKIIFSPRESEVLYWCSIGKTYSEIGTILNISTYTVKFHIGNVVKKLGVINAK 220

Query: 223 QAIAKAIRFGYI 234
            AI+ +++   I
Sbjct: 221 HAISLSVKLNLI 232


>gi|239827940|ref|YP_002950564.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808233|gb|ACS25298.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70]
          Length = 74

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +
Sbjct: 8   PKPLLTKREREIFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELL 67

Query: 230 RFG 232
           R G
Sbjct: 68  RMG 70


>gi|220906489|ref|YP_002481800.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863100|gb|ACL43439.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 236

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             ++       + +E+ IE       V     E    +   A  LTERE   LQL  +G 
Sbjct: 134 AGIVLRQTRQSIDSEMGIELQ---ETVNIRATEPEYSQILEASPLTERELEVLQLIVEGD 190

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  IAEKL ++V TV  ++ +   KL A +R QA  +A+R G I
Sbjct: 191 SNALIAEKLFITVGTVKTHVRNILNKLCADDRTQAAVRALRSGLI 235


>gi|308067163|ref|YP_003868768.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305856442|gb|ADM68230.1| Transcriptional regulatory protein degU (Protease production
           enhancer protein) [Paenibacillus polymyxa E681]
          Length = 217

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +    +L+ERE   L     GY ++EIAE L +SV TV ++  +   KL    R + 
Sbjct: 145 EGIAGPYESLSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLSLKTRPEL 204

Query: 225 IAKAIRFGYI 234
           +  A++ G +
Sbjct: 205 VKFALKKGLL 214


>gi|306834744|ref|ZP_07467810.1| LuxR family DNA-binding response regulator [Corynebacterium
           accolens ATCC 49726]
 gi|304569381|gb|EFM44880.1| LuxR family DNA-binding response regulator [Corynebacterium
           accolens ATCC 49726]
          Length = 205

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    L   V+  A             L ++     ++L+ RE   L+  
Sbjct: 97  AGAMGYLLKDSPEEELHEAVLNTAARQRTLAPEVVNLLAQRVGQPEQSLSTRELEILRAL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +++E+A +L +S  TV  +L     KL    R  A+  A     I
Sbjct: 157 ATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205


>gi|254385641|ref|ZP_05000964.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194344509|gb|EDX25475.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 224

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + R+     LTERE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q
Sbjct: 147 SEPRNKEIERLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQ 206

Query: 224 AIAKAIRFGYI 234
            +  A   G +
Sbjct: 207 VVVLAYETGLV 217


>gi|304404930|ref|ZP_07386590.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345809|gb|EFM11643.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 237

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R +AA  LT+RE   L+    G +++EI  KLG+S +TV  +L +   KL   NR+Q   
Sbjct: 171 RRTAATPLTDREKEILERVAYGDSNKEIGAKLGISENTVKNHLKNILQKLHLDNRVQLAR 230

Query: 227 KAIRFGY 233
            A   G 
Sbjct: 231 YAHEQGI 237


>gi|302518123|ref|ZP_07270465.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|318059111|ref|ZP_07977834.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079115|ref|ZP_07986447.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333028198|ref|ZP_08456262.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|302427018|gb|EFK98833.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|332748050|gb|EGJ78491.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 223

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +         ++  S  + LTERE   L+L   G ++ EIA  L +S  TV  ++G
Sbjct: 135 RLLDKYAGHLPSGEEQPPSTLQTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A   G +
Sbjct: 195 HVLTKLGLRDRVQAAVFAYESGLV 218


>gi|154686976|ref|YP_001422137.1| GerE [Bacillus amyloliquefaciens FZB42]
 gi|308174538|ref|YP_003921243.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352827|gb|ABS74906.1| GerE [Bacillus amyloliquefaciens FZB42]
 gi|307607402|emb|CBI43773.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554460|gb|AEB24952.1| transcriptional regulator [Bacillus amyloliquefaciens TA208]
 gi|328912864|gb|AEB64460.1| transcriptional regulator of spore coat protein [Bacillus
           amyloliquefaciens LL3]
          Length = 74

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|119964172|ref|YP_949850.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119951031|gb|ABM09942.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 218

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 46/109 (42%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    +   V+  A G           L  +  + +  L+ RE   L+L 
Sbjct: 107 AGASGYMLKDAPPEQIRQAVLSAAAGQTALAPEVAARLMGRIRNPSPALSGREVQLLELL 166

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++  +A++L +S  TV  +L     KL   NR  AIA A +   I
Sbjct: 167 ATGMSNRAMAKQLFISEATVKTHLVHIYSKLGVDNRTAAIAVATQRRII 215


>gi|306817801|ref|ZP_07451542.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|304649450|gb|EFM46734.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 233

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LTERET  L+L   G T++E+A+KL +S+ TV  ++G+   K+ A +R+QA+  A 
Sbjct: 168 ALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAY 227

Query: 230 RFGYI 234
             G +
Sbjct: 228 ENGLV 232


>gi|227876856|ref|ZP_03994965.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977833|ref|ZP_06184790.1| response regulator protein VraR [Mobiluncus mulieris 28-1]
 gi|227842753|gb|EEJ52953.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269934003|gb|EEZ90580.1| response regulator protein VraR [Mobiluncus mulieris 28-1]
          Length = 233

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LTERET  L+L   G T++E+A+KL +S+ TV  ++G+   K+ A +R+QA+  A 
Sbjct: 168 ALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAY 227

Query: 230 RFGYI 234
             G +
Sbjct: 228 ENGLV 232


>gi|167006408|ref|YP_001661631.1| putative two-component system regulator [Streptomyces sp. HK1]
 gi|166162490|gb|ABY83611.1| putative two-component system regulator [Streptomyces sp. HK1]
          Length = 220

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA----RNLTERETSCLQ 183
                       ++A    + A G   ++I +F  L  +  +       +LTERET  + 
Sbjct: 105 DASADQLAEAVRVIAAGDALLAPGITRRLIAEFSRLDDRPRAPLRQRIEDLTERETEVVA 164

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA++L L+  TV  ++G   +KL   +R QA   A   G +
Sbjct: 165 LIAHGLSNAEIAQRLVLAEQTVKTHVGRILLKLGLRDRTQAAVFAYESGLV 215


>gi|84624990|ref|YP_452362.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166711074|ref|ZP_02242281.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188575549|ref|YP_001912478.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|289665304|ref|ZP_06486885.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|84368930|dbj|BAE70088.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188520001|gb|ACD57946.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 213

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|302524082|ref|ZP_07276424.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302432977|gb|EFL04793.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 178

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 2/157 (1%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                 P+    +  +  + +  + + RL         I F            I      
Sbjct: 21  ARYTRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIAAAIAGGARG 80

Query: 140 MLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEK 197
            L  +    E   A    +        ++ S     LTERE   L+    G ++ +I  +
Sbjct: 81  YLRWDASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRE 140

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  +      KL   +R QA+A   R G +
Sbjct: 141 LYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 177


>gi|296268221|ref|YP_003650853.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091008|gb|ADG86960.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 206

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 12/147 (8%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRL-----GFHKNGYVIFTSEFLMLAN--EVIIEAHGA 152
             G   +    GL     +   V          + G   F  + +      + I   H  
Sbjct: 60  RDGLDVLAELHGLGVRVIVLTSVTGRGEVLPAMRAGAAGFLYKDVDPEALVQAIRAVHEG 119

Query: 153 CYQVITDFLE--LFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              +  +  E  L    +        LT RE   L+L   G ++ EIA +L ++  TV  
Sbjct: 120 QVLLAPEAAEAVLGGPAAPPGEPEIALTAREREVLRLIAAGRSNREIARELSVAEKTVKT 179

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +  +KL   +R QA   A+R G +
Sbjct: 180 HVSNVLMKLGVQDRTQAALYAVRRGLV 206


>gi|167914159|ref|ZP_02501250.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
          Length = 306

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 88  LLRLMGFATFAYFALEFMRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 145

Query: 84  LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W   Q      + G       +R+       +G+ + + +   +      FT+  
Sbjct: 146 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 205

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 206 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 264

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 265 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 306


>gi|319787738|ref|YP_004147213.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466250|gb|ADV27982.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 213

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNDFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|320008468|gb|ADW03318.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 218

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181
               GY++  +    L   V   A G               +    + A   L+ RE   
Sbjct: 105 AGATGYLLKDAPREELLTAVRAAADGRTVLSPAVASRLVSRVRTPAAPAREPLSVREREV 164

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G ++ EIA +L +S  TV  +L     KL A +R  A+A A   G +
Sbjct: 165 LRLVARGTSNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVATAYERGIL 217


>gi|78046817|ref|YP_362992.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|289669198|ref|ZP_06490273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325927244|ref|ZP_08188501.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78035247|emb|CAJ22892.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542364|gb|EGD13849.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 213

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|56421205|ref|YP_148523.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|138896235|ref|YP_001126688.1| germination protein GerE [Geobacillus thermodenitrificans NG80-2]
 gi|196250193|ref|ZP_03148887.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|261418314|ref|YP_003251996.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297529168|ref|YP_003670443.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319767726|ref|YP_004133227.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|56381047|dbj|BAD76955.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|134267748|gb|ABO67943.1| Germination protein GerE [Geobacillus thermodenitrificans NG80-2]
 gi|196210377|gb|EDY05142.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|261374771|gb|ACX77514.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|297252420|gb|ADI25866.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
 gi|317112592|gb|ADU95084.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 74

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA++L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAKELFISEKTVRNHISNAMQKLGVKGRSQAVIELLRMG 70


>gi|219849441|ref|YP_002463874.1| LuxR family transcriptional regulator [Chloroflexus aggregans DSM
           9485]
 gi|219543700|gb|ACL25438.1| transcriptional regulator, LuxR family [Chloroflexus aggregans DSM
           9485]
          Length = 508

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            ++ERE   L+L   G T+++IA  L +SV+TV  +L +   K+   +R +A   AIR G
Sbjct: 6   PISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVYAIRTG 65

Query: 233 YI 234
            +
Sbjct: 66  IV 67


>gi|75910715|ref|YP_325011.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75704440|gb|ABA24116.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 236

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NL+ RE   L+L  +G ++ EIAEKL LS +TV  ++     KL   +R+QA   A+R G
Sbjct: 175 NLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSG 234

Query: 233 YI 234
            +
Sbjct: 235 LV 236


>gi|52081342|ref|YP_080133.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52786720|ref|YP_092549.1| GerE [Bacillus licheniformis ATCC 14580]
 gi|157693255|ref|YP_001487717.1| spore germination protein E [Bacillus pumilus SAFR-032]
 gi|194017341|ref|ZP_03055953.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|221310782|ref|ZP_03592629.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315107|ref|ZP_03596912.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320025|ref|ZP_03601319.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324308|ref|ZP_03605602.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767655|ref|NP_390719.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|296331611|ref|ZP_06874080.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675430|ref|YP_003867102.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|311069333|ref|YP_003974256.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|319647250|ref|ZP_08001472.1| spore germination protein gerE [Bacillus sp. BT1B_CT2]
 gi|321312374|ref|YP_004204661.1| transcriptional regulator [Bacillus subtilis BSn5]
 gi|251757272|sp|P11470|GERE_BACSU RecName: Full=Spore germination protein gerE
 gi|13786948|pdb|1FSE|A Chain A, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786949|pdb|1FSE|B Chain B, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786950|pdb|1FSE|C Chain C, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786951|pdb|1FSE|D Chain D, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786952|pdb|1FSE|E Chain E, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786953|pdb|1FSE|F Chain F, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|2924355|emb|CAA11701.1| GerE [Bacillus subtilis]
 gi|52004553|gb|AAU24495.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52349222|gb|AAU41856.1| GerE [Bacillus licheniformis ATCC 14580]
 gi|157682013|gb|ABV63157.1| spore germination protein E [Bacillus pumilus SAFR-032]
 gi|194011209|gb|EDW20779.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|225185283|emb|CAB14801.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|291485272|dbj|BAI86347.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195]
 gi|296151206|gb|EFG92086.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413674|gb|ADM38793.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|310869850|gb|ADP33325.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|317390597|gb|EFV71402.1| spore germination protein gerE [Bacillus sp. BT1B_CT2]
 gi|320018648|gb|ADV93634.1| transcriptional regulator [Bacillus subtilis BSn5]
          Length = 74

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|297161250|gb|ADI10962.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 238

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           G    V+ ++  L    + AA        LTERE   L+L   G + ++IAE+L +S  T
Sbjct: 146 GLAGLVLGEYRRLATDPAPAAPDRPVAPRLTEREKEVLRLVAKGLSYKQIAERLVISHRT 205

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V  ++ +   KL   NR++ +  AI  G 
Sbjct: 206 VQNHVQNTLGKLQLHNRVELVRYAIERGL 234


>gi|290961675|ref|YP_003492857.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260651201|emb|CBG74322.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 223

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   +R+       +  +    +L             +         ++       LT+R
Sbjct: 114 LVQAIRVVAGGEAMLAPSITRRLLD------------KYAEHLPSGDEQVPDTLHTLTDR 161

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G +
Sbjct: 162 EVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|148655092|ref|YP_001275297.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148567202|gb|ABQ89347.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 242

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179
                   +   +    L N+ +I       +V+  F EL     ++ S+    LT RE 
Sbjct: 110 HPRDLVRMIREVARGKYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREI 169

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L     G +++EIA +L +S  TV  ++ S   KL   +R  A+  AI+ G+I
Sbjct: 170 EILDCIARGLSNKEIASQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224


>gi|124381986|ref|YP_001023905.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126442536|ref|YP_001061999.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126447520|ref|YP_001078722.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|134279276|ref|ZP_01765989.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|237508465|ref|ZP_04521180.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
 gi|251766848|ref|ZP_04819839.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
 gi|254183039|ref|ZP_04889631.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1655]
 gi|254200625|ref|ZP_04906990.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|254356552|ref|ZP_04972827.1| transcriptional regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|124290006|gb|ABM99275.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10229]
 gi|126222027|gb|ABN85532.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           668]
 gi|126240374|gb|ABO03486.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10247]
 gi|134249695|gb|EBA49776.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|147748237|gb|EDK55312.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|148025579|gb|EDK83702.1| transcriptional regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|184213572|gb|EDU10615.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1655]
 gi|235000670|gb|EEP50094.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
 gi|243064620|gb|EES46806.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
          Length = 319

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 101 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 158

Query: 84  LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W   Q      + G       +R+       +G+ + + +   +      FT+  
Sbjct: 159 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 218

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 219 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 277

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 278 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 319


>gi|297159285|gb|ADI08997.1| two component LuxR family transcriptional regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 228

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182
                G+++  +E   L + V   A G           L  +  + +    LTERE   L
Sbjct: 96  RAGAIGFLLKNAEADELRSAVKGAAAGRIQVSPDATSRLMGQVRAPSGPEQLTEREAEVL 155

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +   G +++EIA  L +   TV  Y+     KL   +R QA   A++ G +
Sbjct: 156 TMLARGKSNKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207


>gi|288573855|ref|ZP_06392212.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569596|gb|EFC91153.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 222

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 32/70 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              R      L+ERE   L     G   +EIAE+L LS  TV  ++     KL   +R Q
Sbjct: 143 DTSRERGMSRLSERELEVLYWLAQGLNGQEIAERLSLSDKTVKNHISHILAKLKVSDRTQ 202

Query: 224 AIAKAIRFGY 233
           A+A A R G 
Sbjct: 203 AVAWAWRSGL 212


>gi|333027751|ref|ZP_08455815.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332747603|gb|EGJ78044.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 216

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 34/232 (14%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   ++A  F L           R+           D   +   L     
Sbjct: 3   VDDHPMWRDAVARDLEAAGFELVATAGDGPQAVRRATAT-----RPDVLVLDLNLPGL-- 55

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++    +L V +       A +   V+ G        
Sbjct: 56  -PGVEVCKR--------------LVGERPELHVLVLSASGEHADVLEAVKSGATGYLVKS 100

Query: 134 FTSEF--LMLANEVIIEAHG---ACYQVITDFLELFKKRSS-------AARNLTERETSC 181
            ++E     +    + +A         V+ ++  L  +              LTERET  
Sbjct: 101 ASTEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPETPRLTERETEV 160

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 161 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 212


>gi|328881294|emb|CCA54533.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 225

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            ++      
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYSAHLPTGEEQVPDTLS 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|124006802|ref|ZP_01691632.1| two-component response regulator [Microscilla marina ATCC 23134]
 gi|123987483|gb|EAY27192.1| two-component response regulator [Microscilla marina ATCC 23134]
          Length = 208

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +   L+ RE   L    +G +++EIA+KL +S  TV+ +  +   KL+  N +Q +  A
Sbjct: 143 PSIPQLSAREKEVLHFLVEGLSNKEIADKLFISSKTVDNHRANILKKLNLKNNVQLVRFA 202

Query: 229 IRFGYI 234
           +    +
Sbjct: 203 LEHKLV 208


>gi|76667926|dbj|BAE45354.1| two component response regulater [Bacillus subtilis]
          Length = 229

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+  DG ++  I E L +S   V  ++ +   K++  +R QA+  AI
Sbjct: 162 PLHILTRRECEVLQMLADGKSNRGIGESLFISEKAVKNHVSNILQKINVNDRTQAVVVAI 221

Query: 230 RFGYI 234
           + G++
Sbjct: 222 KNGWV 226


>gi|325576790|ref|ZP_08147405.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160996|gb|EGC73114.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 209

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I              +V++E      Q        
Sbjct: 72  LRAEGVDARILILTVSDAKNDIFTLIDAGADGYLLKDTEPDVLLEQIKRIAQGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L   K       +LT+RE   L+L   G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNLLLERKHTVDPMDSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 192 NVHSRVAATVL 202


>gi|322377077|ref|ZP_08051569.1| DNA-binding response regulator VraR [Streptococcus sp. M334]
 gi|321281790|gb|EFX58798.1| DNA-binding response regulator VraR [Streptococcus sp. M334]
          Length = 210

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L + V   A    A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGARGYMLKTSSADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|294812171|ref|ZP_06770814.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440673|ref|ZP_08215407.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324770|gb|EFG06413.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
          Length = 234

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 151 GACYQVITDFLELFKKRSSA-------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           G    V+ ++  L  + +         A  LT+RET  L+L   G + ++IAE+L +S  
Sbjct: 136 GLAGLVLGEYRRLAGEPAPTPGGPEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVISHR 195

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 196 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 225


>gi|302518272|ref|ZP_07270614.1| two component response regulator [Streptomyces sp. SPB78]
 gi|318062320|ref|ZP_07981041.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079406|ref|ZP_07986738.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333028052|ref|ZP_08456116.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|302427167|gb|EFK98982.1| two component response regulator [Streptomyces sp. SPB78]
 gi|332747904|gb|EGJ78345.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 226

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRS--SAARNLTERE 178
           +R G     Y     E L  A   +   H     +V    L   ++        +LTERE
Sbjct: 110 LRAGAAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVAGMLLAQEEQAPQQPRGGSLTERE 169

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R GY
Sbjct: 170 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGY 224


>gi|152974058|ref|YP_001373575.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022810|gb|ABS20580.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 220

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +   +    LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R Q
Sbjct: 147 EQSVPNQIEQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLIGKLELRDRTQ 206

Query: 224 AIAKAIRFGY 233
           A   A+R+G 
Sbjct: 207 AAIYAVRYGI 216


>gi|126660738|ref|ZP_01731836.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126617979|gb|EAZ88750.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 245

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             + +   L +       + +LT +E   L+L   G  + +IAE+L ++V TV  ++ S 
Sbjct: 163 HQMREIDALDEDTQQMINSSSLTPKELEVLELIVAGCNNAQIAERLFVTVGTVKTHVRSI 222

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL A +R QA  +A+R G +
Sbjct: 223 LNKLCANDRTQAAVRALRSGLV 244


>gi|304406459|ref|ZP_07388115.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344517|gb|EFM10355.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 220

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 139 LMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTS 191
           +    +  +E H  A  +++    E    R            LT+RE   L+L   G ++
Sbjct: 116 IRRVWQGQVELHPDAASRLMNILAEPESNRDDPDEAAKRLSELTKREHEVLRLIATGMSN 175

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +EI + L ++  TV  ++     KL   +R QA   A++ G 
Sbjct: 176 KEIGDSLSITEKTVKTHVSHVLEKLGFADRTQAAIFAVKQGI 217


>gi|221065714|ref|ZP_03541819.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220710737|gb|EED66105.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 254

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   L+L   G  + EI   L +S  TV+ ++ +   K+    R QA+  A+  
Sbjct: 192 EPLTEREKEVLRLIAQGKRTHEIGSYLKISTLTVSTHVKNIYRKMQVRTRAQAVRYAVLK 251

Query: 232 GYI 234
           G I
Sbjct: 252 GII 254


>gi|306825821|ref|ZP_07459160.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432182|gb|EFM35159.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 210

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|294666925|ref|ZP_06732155.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603297|gb|EFF46718.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 213

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|258622070|ref|ZP_05717096.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585394|gb|EEW10117.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 224

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 71/238 (29%), Gaps = 30/238 (12%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S        S+S+ +    L      I       ++I          + IC  H +   
Sbjct: 9   LSNQLRCADNSTSIHDWFDELK---KDISFE----FSILGIFGEHYSLEPIC--HGFSPT 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                        D F+  F      I+   +      +   +L   L G       I  
Sbjct: 60  QFSTCFGNKRPENDPFVAAFQQSGQGIM-ALMDPYNHPDYGKRLL--LAGQHGEKKAIFL 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLT 175
                                +++ I   +     +      +  +            LT
Sbjct: 117 TSFGN-------------RHPSSDEIDTLYLLTPHLYLASDSIAHQSQQLHLPPPLNPLT 163

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +RE   L     G ++ EI+  L +S  TV  +L +   KL+  NR  AIAKAI  G+
Sbjct: 164 DRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|269126536|ref|YP_003299906.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311494|gb|ACY97868.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +  +    + +         LTERE   L+    G ++ EIA +L +S  TV  ++
Sbjct: 136 RLLDKFASRLPSMRQTPPPPGLETLTEREREVLKHVARGLSNAEIARELVVSETTVKTHV 195

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
           G+   KL   +R+QA+  A   G 
Sbjct: 196 GNVLAKLGLRDRVQAVVYAYETGM 219


>gi|21241983|ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107378|gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 214

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 139 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 198

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 199 RDRTRAVLKAFELQLV 214


>gi|304407706|ref|ZP_07389357.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343189|gb|EFM09032.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 242

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G +++ I E L +S  TV  ++ S   K++  +R QA+  +I+FG
Sbjct: 179 PLTRREAEVLRLMAEGKSNKTIGEFLFISEKTVKNHVSSILQKMEVDDRTQAVIHSIKFG 238

Query: 233 YI 234
           ++
Sbjct: 239 WV 240


>gi|312200532|ref|YP_004020593.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231868|gb|ADP84723.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 214

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAA 171
           +    +     GY++  +E   +A  +   A            +V+  F    +   +  
Sbjct: 88  SVFAAMRAGARGYLLKGAERQEIARSLRAVAAGEVVFSAAIASRVLAWFATGGRSALAPF 147

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L L   G T+  IA +L LS  TV  ++ +   KL   +R +A+A+A   
Sbjct: 148 PELTDREREILDLVARGLTNPAIARRLFLSDKTVRNHVSNVFAKLQVADRAEAVARARDA 207

Query: 232 GY 233
           G 
Sbjct: 208 GL 209


>gi|302528110|ref|ZP_07280452.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302437005|gb|EFL08821.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 208

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETSCLQL 184
               GY++  S    L   V   A G            + + R+ A   L++RE   L L
Sbjct: 97  AGATGYLLKDSPREELFRAVRAAARGEAVLSPAVASRIMGQMRAPAQEPLSQREIEVLNL 156

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T++E A+KL +S  TV  +L  A  KL   +R  A+A A   G +
Sbjct: 157 VARGSTNKEAAKKLFISEATVKTHLLHAYAKLGVKDRAAAVAVAFERGLL 206


>gi|256420108|ref|YP_003120761.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035016|gb|ACU58560.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 234

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 24/236 (10%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
            EN L   +  SL+ L      +              N++       + + ++  Y L  
Sbjct: 18  KENELLKTRIQSLESLLDHFPAM---------LYTHQNNSKTINWCNRYMEDVTGYTLA- 67

Query: 62  GDIPNILIETYGDDF--LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF--AG 117
                 +     D F  + H +   L +I Q   +E      G L  R  G        G
Sbjct: 68  -----EMNSLGLDFFKKVMHPDDFELAVIAQQSFKENKNVFGGVLRFRKRGAENWRWLTG 122

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           IA P           +  +    +   + ++ +    + + D +   +K       LT R
Sbjct: 123 IAIPYSRDEAGGVKEVICA---FVDMTMAMDTNDQLTEAMLDVMR--RKHEDLISKLTPR 177

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E   L+L   G  ++EIA +L LS +T+  +  +  +KL   N  + IA A + GY
Sbjct: 178 EKDILKLTVKGLNNKEIAAELNLSRYTIETHRKNIRIKLKVRNTTELIALARKVGY 233


>gi|220935339|ref|YP_002514238.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996649|gb|ACL73251.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 227

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             S    LT RE   L L  +G +++ IA  LG+S  TV  ++ +   KL   +R++A  
Sbjct: 146 EPSPFDELTPREGEILALLAEGQSNKVIARNLGISDGTVKLHVKAILRKLGVHSRVEAAV 205

Query: 227 KAIRFGY 233
            A++ G 
Sbjct: 206 LAVQQGL 212


>gi|205372669|ref|ZP_03225480.1| hypothetical protein Bcoam_04270 [Bacillus coahuilensis m4-4]
          Length = 223

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 157 ITDFLELFKKRSSAAR-----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +T  L L K+++  +             LTERE   L   G G  + EIAE L ++  TV
Sbjct: 130 LTAQLFLDKRKTPPSDFEPVGQPVDRSLLTEREWGVLSELGKGLNNREIAEALYITEGTV 189

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++ +   KL+  +R QA   A+R G 
Sbjct: 190 KNHVSNIISKLEVRDRTQAAIYAVRHGI 217


>gi|21221817|ref|NP_627596.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787004|ref|ZP_05525435.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289770897|ref|ZP_06530275.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|4585835|emb|CAB40929.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701096|gb|EFD68525.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++  +            +        + R    + LTERE   + L   G ++ 
Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPML---PATGQEPRQKELQRLTEREREVMVLVAQGMSNG 175

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L LS  TV  ++G    KL   +R+Q +  A   G +
Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|294627058|ref|ZP_06705648.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598720|gb|EFF42867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 213

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|119960873|ref|YP_948224.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119947732|gb|ABM06643.1| putative two-component system response regulator [Arthrobacter
           aurescens TC1]
          Length = 237

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +F  + ++  +            + T   E  +  ++A   LT RE    QL   G ++ 
Sbjct: 133 VFRGDAVIAPSTTRRLLDHVAPLLRTQTPEQTEH-AAAVERLTAREREVFQLIAQGQSNP 191

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  L LS  TV  ++G    KL A +R+Q +  A   G +
Sbjct: 192 EIAAGLFLSEATVKTHVGHILAKLGARDRVQVVVIAYETGVV 233


>gi|239928815|ref|ZP_04685768.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437136|ref|ZP_06576526.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340031|gb|EFE66987.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 217

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181
               GY++  +    L   V   A G               +   R++    L+ RE   
Sbjct: 104 AGATGYLLKDAPREELFTAVRAAADGRTVLSPAVASRLVCAVRAPRTAGGEPLSAREREV 163

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G ++ EIA +L +S  TV  +L     KL   +R  A+A A   G +
Sbjct: 164 LALVARGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYDRGIL 216


>gi|309792037|ref|ZP_07686513.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308225930|gb|EFO79682.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 234

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              +V+  F EL     ++ S     LT RE   L     G +++EIA +L +S  TV  
Sbjct: 132 VATRVLHQFRELAATEDEQTSVLFAPLTSREIEILDCIARGLSNKEIANELSISGQTVKN 191

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ S   KL   +R  A+  AI+ G++
Sbjct: 192 HITSILSKLQVNDRTMAVIYAIKRGWV 218


>gi|304406658|ref|ZP_07388313.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344191|gb|EFM10030.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 222

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           Q +T  L   +    A   LTERE   L L  DG  ++EIAE+L +S+ TV  ++ +  +
Sbjct: 140 QALTRGLR-QRSAQGADEGLTEREKEVLLLIADGMANKEIAEELHISIKTVKTHVSNLLM 198

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           K +  +R Q    A R G+
Sbjct: 199 KCELEDRTQLAVYAHRKGW 217


>gi|307708226|ref|ZP_07644693.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|307615672|gb|EFN94878.1| response regulator [Streptococcus mitis NCTC 12261]
          Length = 210

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|306828929|ref|ZP_07462121.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304429107|gb|EFM32195.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 210

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L + V   A    A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LNAGAKGYMLKTSSADELLHAVRKVASGELAIEQEVSKKVEYHRNHIELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|172037280|ref|YP_001803781.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698734|gb|ACB51715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 247

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 41/83 (49%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               V+ +      + +     L+ERE   L+L  +G ++ EIAE L LS +T+  ++  
Sbjct: 165 IARLVLDNLKSPNPEPNQNIALLSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRG 224

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+QA   A+R G +
Sbjct: 225 IMNKLAVDDRVQAAVVALRSGLV 247


>gi|119898377|ref|YP_933590.1| putative transcriptional activator protein [Azoarcus sp. BH72]
 gi|119670790|emb|CAL94703.1| putative transcriptional activator protein [Azoarcus sp. BH72]
          Length = 251

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 19/240 (7%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +S+ L+ L   L       +  +F L+T  +   F   + L+C     +   G    +  
Sbjct: 8   ESADLERLHFALEASIRVARRSHFFLWTQGALQCFLPHETLLCASSGAEQTPGTQD-VFS 66

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-----------GGLLPFAGI 118
                  + +  +     +   +++  +      L +              GG L   GI
Sbjct: 67  RLLIPPRVEYILTEPGAPVVGGLRQAWLQAGRAPLVLPAAPLRTAVPELACGGELLCHGI 126

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----L 174
           A     G   + + +F              A      +    L + +   +AA      L
Sbjct: 127 A---GHGAAPSTFFVFIGLPAPPGPRERYLAELLMPHLHLALLRMREGEHAAAGASPALL 183

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   L    DG T+++I E L +S  TV  ++     KL A NR QA+A  +  G I
Sbjct: 184 SGRELQVLGCMRDGLTNQQIGEVLEISALTVKNHVQRILRKLRAANRAQAVANGVAAGLI 243


>gi|327472699|gb|EGF18126.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 210

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|219667288|ref|YP_002457723.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537548|gb|ACL19287.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 215

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 41/96 (42%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +A   I         ++       K  + +A NLTERE   L+    GYT++EI E L
Sbjct: 118 RDVAGGEIYLDSSLAQNLVKSMYSPRKDNNRSASNLTEREKEVLRYIALGYTNKEIGESL 177

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +SV TV  +      K+    R   +  AI  GYI
Sbjct: 178 SVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYI 213


>gi|294630642|ref|ZP_06709202.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292833975|gb|EFF92324.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 223

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + LTERE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q +  A   
Sbjct: 155 QRLTEREREVMTLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|172039086|ref|YP_001805587.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700540|gb|ACB53521.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 265

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G  + +IAEKL ++V TV  ++ +   KL   +R QA  +A+R G
Sbjct: 203 PLTDREFDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRSG 262

Query: 233 YI 234
            +
Sbjct: 263 LV 264


>gi|119513102|ref|ZP_01632155.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119462236|gb|EAW43220.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 240

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L    ++      LT+RE   L+L   G ++ +IAEKL ++V TV  ++ +   KL A
Sbjct: 164 EALASEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCA 223

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QA  +A+R G +
Sbjct: 224 DDRTQAAVRALRSGLV 239


>gi|29831224|ref|NP_825858.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608339|dbj|BAC72393.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q +  A   
Sbjct: 155 ERLTDREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|315634983|ref|ZP_07890264.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter
           segnis ATCC 33393]
 gi|315476245|gb|EFU66996.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter
           segnis ATCC 33393]
          Length = 209

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I              + ++       Q        
Sbjct: 72  LRAEDVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIAQGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L   +   S   +LT+RE   L+L   G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNLLLERQSSQSPIDSLTDREIDVLRLVATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A       
Sbjct: 192 NVHSRVAATVLYFEH 206


>gi|254193253|ref|ZP_04899688.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
 gi|169650007|gb|EDS82700.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
          Length = 319

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 101 LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 158

Query: 84  LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W   Q      + G       +R+       +G+ + + +   +      FT+  
Sbjct: 159 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 218

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 219 RSRDWISSATLEQVLSL-GLSVHRFAAPQLVASARERAAERLTPFERELLVGIAEGASDK 277

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 278 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 319


>gi|258654718|ref|YP_003203874.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258557943|gb|ACV80885.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 207

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    L   V   A G           L ++  +   +L+ RE   L+  
Sbjct: 97  AGASGYLLKGAPPDELLLAVRSAAAGESALAPPIASRLLERLRTPQTSLSPREIEVLERV 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EIA +L ++  TV ++L     KL   +R  A++ A   G +
Sbjct: 157 AAGRSNGEIARELVITEQTVKSHLVHIYTKLGVSSRTAAVSLARERGIL 205


>gi|70730988|ref|YP_260729.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345287|gb|AAY92893.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 240

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 21/229 (9%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            E+   L    N  +      ++     D     +++  + +Y                D
Sbjct: 24  DEIRTELERETNHTE------FSFILRSDLKSHSKVVYNIDSYSYAWRRDYEAEKFWIVD 77

Query: 75  DFLF-HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
             L  H  +   P IW     E+       L ++        +G++  +   F   G + 
Sbjct: 78  PILKIHSPTPYFPTIWSDDFIESK------LFLQAGKDYGFLSGMSIGLPCSFGNYGVLS 131

Query: 134 FTSEF-------LMLANEV-IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             S           L     +++ +      I     L +  +   + L +RE   L+  
Sbjct: 132 IASLKQGSLQGVDPLDWSACVLKVYAKLIDYINRQHSLQRIFNDHQQALNDREIDILRYT 191

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG +S +IA ++ LS  +++ ++     KLD+ N+ QA+A AI+ G I
Sbjct: 192 ADGMSSTDIAMRMHLSKSSIDYHIAKILQKLDSPNKHQALALAIKKGKI 240


>gi|21220150|ref|NP_625929.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|256788738|ref|ZP_05527169.1| two-component response regulator [Streptomyces lividans TK24]
 gi|289772632|ref|ZP_06532010.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|6119696|emb|CAB59507.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289702831|gb|EFD70260.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 223

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +  T      +        LT+RE   L+L   G ++ EIA  L +S  TV  ++G
Sbjct: 135 RLLDKYATHLPSGDEPVPDTLHTLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A   G +
Sbjct: 195 HVLTKLGLRDRVQAAVYAYESGLV 218


>gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 231

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 6/224 (2%)

Query: 14  LQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70
           + +       +++ ++   F++    N+   +   Q       + +  +   D    L +
Sbjct: 8   VDDEPGIREAVKDYLQESGFSVQVASNALEGWEWMQMNTPDLVISDVMMPQVDGYQFLKQ 67

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D            +  + +  + +      +   L     P   +A    L   +  
Sbjct: 68  LREDPRFQALPVVF--LTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLLARRAA 125

Query: 131 YVIFTSEFLM-LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
               T +         +         ++T    + +  +    +LT RE S L L  +G 
Sbjct: 126 KTTTTGDDAETPDLAELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVAEGL 185

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++EIA +L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 186 MNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|322374884|ref|ZP_08049398.1| DNA-binding response regulator VraR [Streptococcus sp. C300]
 gi|321280384|gb|EFX57423.1| DNA-binding response regulator VraR [Streptococcus sp. C300]
          Length = 210

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L + V   A    A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGAKGYMLKTSSADELLHAVRKVASGELAIEQEVSKKVEYHRNHIELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|156741561|ref|YP_001431690.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232889|gb|ABU57672.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 242

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179
                   +   +    L N+ +I       +V+  F EL     ++ S+    LT RE 
Sbjct: 110 HPRDLVRMIREVARGKYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREI 169

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L     G +++EIA +L +S  TV  ++ S   KL   +R  A+  AI+ G+I
Sbjct: 170 EILDCIARGLSNKEIATQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224


>gi|220932886|ref|YP_002509794.1| regulatory protein LuxR [Halothermothrix orenii H 168]
 gi|219994196|gb|ACL70799.1| regulatory protein LuxR [Halothermothrix orenii H 168]
          Length = 887

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L L  +G +++EIA+KL ++V T   ++ +   KL    R QAI KA++ 
Sbjct: 816 EPLSERELEILGLIVNGLSNKEIAKKLYITVGTTKWHISNIYGKLGVNKRAQAIKKALQL 875

Query: 232 GYI 234
             I
Sbjct: 876 ELI 878


>gi|15613763|ref|NP_242066.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173816|dbj|BAB04919.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 209

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL-ELFKKRSSAARNLTERETSC 181
                Y++ TS    +A+ +   A+G      +V    +  +  ++      LT RE   
Sbjct: 96  AGAFSYLLKTSSAKEIASAIRAAANGEAVVEAKVTNKMMERMRSRKKELHEELTPRELEV 155

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L G+G +++ IA++L + + TV  ++ +   KL   +R Q    A R   +
Sbjct: 156 LRLIGEGKSNQGIADELYIGIKTVKTHVSNILHKLQLEDRTQIAVYAHRHRLV 208


>gi|186683493|ref|YP_001866689.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465945|gb|ACC81746.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 206

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETS 180
           L     G +  TS  L +    E I       +    + L + +K  +   + LT RE  
Sbjct: 91  LRSGIRGILPSTSTELEIVAAVEAIAFGLVVLHPDAIELLSIREKVVANPVQTLTPREIE 150

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L + G G  ++ +A++L +S HTV  +L S   KL   +R +A+A  +R G I
Sbjct: 151 VLGMLGSGLGNKAMAKRLQISEHTVKFHLSSIFQKLSVSSRTEAVAVGVRLGLI 204


>gi|307700594|ref|ZP_07637626.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614239|gb|EFN93476.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 233

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LTERET  L+L   G T++E+A+KL +S+ TV  ++G+   K+ A +R+QA+  A 
Sbjct: 168 ALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAY 227

Query: 230 RFGYI 234
             G +
Sbjct: 228 ENGLV 232


>gi|166364716|ref|YP_001656989.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|159030578|emb|CAO88241.1| luxR [Microcystis aeruginosa PCC 7806]
 gi|166087089|dbj|BAG01797.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 210

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               V+ +      + +     L+ERE   L+L  +G ++ EIAE+L LS +T+  ++  
Sbjct: 128 IARLVMDNLKPPAVQPNPNLALLSEREMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRG 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+QA   A+R G +
Sbjct: 188 IMNKLAVDDRVQAAVIALRSGIV 210


>gi|29833213|ref|NP_827847.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610335|dbj|BAC74382.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +       
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGDEPVPDTLH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|227545988|ref|ZP_03976037.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213622|gb|EEI81471.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517050|emb|CBK70666.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bifidobacterium longum subsp.
           longum F8]
          Length = 296

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 231 PELDLLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 290

Query: 229 IRFGYI 234
              G +
Sbjct: 291 YDNGLV 296


>gi|224476942|ref|YP_002634548.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421549|emb|CAL28363.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 205

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180
           L    + Y++ T+    +A  +    H       +V+        +R+     LT+RE  
Sbjct: 91  LDAGVDSYILKTTSASDIAEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTDREME 150

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L  +GY+++EIA    +++ TV  ++ +   KL+  +R QA+  A +   I
Sbjct: 151 ILLLIANGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 204


>gi|167565359|ref|ZP_02358275.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
          Length = 334

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 67/222 (30%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + I  + D      L                       D  +    + 
Sbjct: 116 LLRLMGFATFAYFAIEFSRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 173

Query: 84  LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W     +    +    +    +R+       +G+ + + +   +      +T+  
Sbjct: 174 SMPVVWDLRQLARDHASRGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRMHAFASYTAPR 233

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 234 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASSRERAAERLTPFERELLVGIAEGASDK 292

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 293 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 334


>gi|302546669|ref|ZP_07299011.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|307330767|ref|ZP_07609903.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|302464287|gb|EFL27380.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
 gi|306883570|gb|EFN14620.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 223

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +       
Sbjct: 97  LRAGASGFLLKDAPATELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEEPVPDTLH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|319795995|ref|YP_004157635.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598458|gb|ADU39524.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 245

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 63/227 (27%), Gaps = 17/227 (7%)

Query: 15  QELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            ++  RL   + + + A  FA +  N+       +       N D  + D        + 
Sbjct: 25  SDVRERLGWALLDLLHADQFASFVWNAESGRFDGR----VALNMDPANLDRYGEWH-QHH 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D   F   S         +  +  +    +             G+      G    G + 
Sbjct: 80  DPITFVLQSHRRATRVTDVMPQRELM-QTEFFTDFLSRDGLHWGMNLHAFEGSRALGDLR 138

Query: 134 FTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAA-----RNLTERETSCLQ 183
                         +A       A    +             A      +L+ RE    +
Sbjct: 139 IWRRKGRGDFGEHEKALLDLIEPAFIGALQRAQRTAAAVPMPAGTASWDDLSAREQEVAR 198

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              +G T +EIA ++ +SV TV  YL     KL    R      A R
Sbjct: 199 AVCEGLTDKEIARRMAVSVPTVRTYLRRIFDKLGIERRSALAGLAQR 245


>gi|57233907|ref|YP_182061.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224355|gb|AAW39412.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 225

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 40/78 (51%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             D   L K  S+    LT R+   L L  +G T+++IA  L +S  T+  ++ +   KL
Sbjct: 146 FQDVSLLGKDASNFVTPLTNRKKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKL 205

Query: 217 DAVNRIQAIAKAIRFGYI 234
           +A +R  A+  AIR G I
Sbjct: 206 NANDRAHAVVVAIRCGLI 223


>gi|227543314|ref|ZP_03973363.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227180927|gb|EEI61899.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 212

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +       LT RE   L+L   G +++EI   L LS  TV ++L     KLDA +R
Sbjct: 140 RLMTRVRGPKTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSR 199

Query: 222 IQAIAKAIRFGYI 234
             A+A A   G +
Sbjct: 200 TAAVAAAREQGVL 212


>gi|114565755|ref|YP_752909.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336690|gb|ABI67538.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 213

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +++ +  +   ++S     LT+RE   L L   G T++E+AE + +S  TV  +L 
Sbjct: 129 RVANRLVRELRQSENRKS--EIRLTKREKDVLTLLVKGNTNKEMAEVMFISEKTVKNHLT 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KL   +R  A   A++   +
Sbjct: 187 SIFRKLGVKDRTHAAIYALKNRIV 210


>gi|290957262|ref|YP_003488444.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646788|emb|CBG69885.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181
               GY++  +    L   V   A G               +   R+  +  L+ RE   
Sbjct: 111 AGATGYLLKDAPREELFTAVRAAAEGRTVLSPAVASRLVTAVRSPRTPGSEPLSAREREV 170

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G  + EIA +L +S  TV  +L     KL   +R  A+A A   G +
Sbjct: 171 LALVARGTANREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 223


>gi|37223250|gb|AAQ90227.1| LuxR [Photobacterium leiognathi]
          Length = 217

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 11/198 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           + F         + +   H           ++ ++ ++    + +  +LT+RE  CL  A
Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYXKINIANNKSNNDLTKREKECLAWA 196

Query: 186 GDGYTSEEIAEKLGLSVH 203
            +G +S + ++ LG S  
Sbjct: 197 CEGKSSWDSSKILGCSER 214


>gi|152976905|ref|YP_001376422.1| response regulator receiver protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025657|gb|ABS23427.1| response regulator receiver protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 74

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|218781259|ref|YP_002432577.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762643|gb|ACL05109.1| transcriptional regulator, LuxR family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 287

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              ++     LT RE   L+L  +G+T+ EI++ L +S HTV +++     KL   +R Q
Sbjct: 217 DPVQAPFGETLTTREIQVLRLMAEGFTNGEISDMLEISPHTVKSHVIHVFNKLGVNDRTQ 276

Query: 224 AIAKAIRFGYI 234
           A   A +   +
Sbjct: 277 AAVWAAKNNLV 287


>gi|322688905|ref|YP_004208639.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460241|dbj|BAJ70861.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 299

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 234 PELDLLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 293

Query: 229 IRFGYI 234
              G +
Sbjct: 294 YDNGLV 299


>gi|226365940|ref|YP_002783723.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244430|dbj|BAH54778.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 220

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---LELFKKRSSAARNLTERETSCLQL 184
                       ++A+   + A     ++I D        +++ +A   LT RE   L+L
Sbjct: 108 DAPAEELIRAVRVVADGEALLAPTVTRRLIADVTSRRSTARRKPAALSALTPREREVLEL 167

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++ EIAE+L ++  TV  ++G    KLD  +R QA+  A   G +
Sbjct: 168 IARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217


>gi|84387471|ref|ZP_00990490.1| response regulator [Vibrio splendidus 12B01]
 gi|84377724|gb|EAP94588.1| response regulator [Vibrio splendidus 12B01]
          Length = 210

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + +IE     +        V++ +L   + 
Sbjct: 81  VILTVSDSPADIEAIVKAGADGYLLKDTEPDELIELLKQAHHGDKAYSSVVSRYLNDAES 140

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+     LTERE   LQ    GY +++IA+ L +S  TV  ++ S   KL   +R  A  
Sbjct: 141 RNDIFDQLTEREMQILQEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATV 200

Query: 227 KAIRF 231
             +  
Sbjct: 201 LYLER 205


>gi|332202293|gb|EGJ16362.1| response regulator [Streptococcus pneumoniae GA41317]
          Length = 210

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA+ L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|326440245|ref|ZP_08214979.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 224

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +         +       +LT+RE   L+L   G ++ EIA  L +S  TV  ++G
Sbjct: 135 RLLDKYAGHLPSGEEPVPDTLNSLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A   G +
Sbjct: 195 HVLTKLGLRDRVQAAVYAYESGLV 218


>gi|325686912|gb|EGD28936.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 210

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|149183304|ref|ZP_01861745.1| transcriptional regulator [Bacillus sp. SG-1]
 gi|148848997|gb|EDL63206.1| transcriptional regulator [Bacillus sp. SG-1]
          Length = 74

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|52424333|ref|YP_087470.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306385|gb|AAU36885.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----VITD 159
           L    +    +   V         +I              + ++       Q    +   
Sbjct: 89  LRQEGVDARIVILTVSDSKADIYALIDAGADGYLLKDTEPDTLLAQIKQIAQGEIILSDS 148

Query: 160 FLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
              L  +R  A      LT+RE   LQL   G ++++IA +L +S  TV  ++ +   KL
Sbjct: 149 IKNLLVERHPAHEPIHALTDREMDVLQLIATGLSNKQIAAQLFISEETVKVHIRNLLRKL 208

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 209 NVHSRVAATVL 219


>gi|319652028|ref|ZP_08006149.1| LuxR family Two component transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
 gi|317396319|gb|EFV77036.1| LuxR family Two component transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
          Length = 217

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L L   G+++++IAE+L +SV TV  + G+   KL    R + +A A++ G 
Sbjct: 153 LSDREKEVLTLIAKGFSNKDIAEQLVISVKTVETHKGNLMEKLQMKTRPELVAYALKKGL 212

Query: 234 I 234
           +
Sbjct: 213 L 213


>gi|289168573|ref|YP_003446842.1| response regulator [Streptococcus mitis B6]
 gi|288908140|emb|CBJ22981.1| response regulator [Streptococcus mitis B6]
          Length = 210

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L + V   A    A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGKLAIEQEVSKKVEYHRNHIELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|166007196|pdb|2RNJ|A Chain A, Nmr Structure Of The S. Aureus Vrar Dna Binding Domain
          Length = 91

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            KKR+     LTERE   L L   GY+++EIA    +++ TV  ++ +   KL+  +R Q
Sbjct: 20  MKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQ 79

Query: 224 AIAKAIRFGYI 234
           A+  A +   I
Sbjct: 80  AVIYAFQHNLI 90


>gi|324994067|gb|EGC25981.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327459273|gb|EGF05619.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327490491|gb|EGF22272.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
          Length = 210

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|300787377|ref|YP_003767668.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796891|gb|ADJ47266.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 48/111 (43%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           LG    GYV+       L   V   A G           L  +  S   +LT RE   ++
Sbjct: 102 LGAGARGYVLKAGPPEELFRAVRSAAAGGLGLAPEIVDGLVGQVVSPDPDLTTREIEVIR 161

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++  IAE L LS  TV  +L     KL A NR  A+++A+R G +
Sbjct: 162 LLASGRSNRAIAEALFLSEATVKTHLVRIYRKLGADNRAAAVSEAVRRGLL 212


>gi|289679671|ref|ZP_06500561.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
          Length = 160

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 3/162 (1%)

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D  +  + + L  + WQ    +  + +       L         I++           V
Sbjct: 1   QDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDALVDTCELLPAISYGYTNHCRGADSV 57

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                   +   +  E       ++     + +     +R LT RE   LQ A DG T+ 
Sbjct: 58  TSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWARDGKTAW 117

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI+    +S  TV  +L +   KL   NR QA+ +A+  G I
Sbjct: 118 EISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 159


>gi|229004659|ref|ZP_04162396.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228756547|gb|EEM05855.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
          Length = 191

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+ +   + +        L+ERE   L+L   G T+ EIAE L +S  TV  ++ 
Sbjct: 100 RVAARVVNEIRAMKQASPYPFSELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVS 159

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL  ++R +A   A   G+
Sbjct: 160 NILSKLHMLDRTKAAVFAWEQGF 182


>gi|134098288|ref|YP_001103949.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004292|ref|ZP_06562265.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910911|emb|CAM01024.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +  +               LT+RE   L     G ++ EIA+ L ++  TV +++ 
Sbjct: 136 RRLIEHFSRTAAPPITNPPRLDVLTDREREVLVHVARGLSNTEIADALFIAEQTVKSHVS 195

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA+  A   G +
Sbjct: 196 RILGKLGVRDRVQAVVVAYETGLV 219


>gi|116621307|ref|YP_823463.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224469|gb|ABJ83178.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 207

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 7/154 (4%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
               +          + ++ +         IA     G       +       L  +V+ 
Sbjct: 52  DVSLLDLRMPGIGGVEAAIAIRAEFGGARMIALTTYGGDEDIRRALAAGVQAYLTKDVLH 111

Query: 148 EAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           +      +        +   +           +L+ RE   L L   G  +++IA  L +
Sbjct: 112 DELIKAIRAVHAGQTYLPAAVAASLAAQLPRPDLSAREVQVLGLIVRGLANKQIAFTLSI 171

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + HTV  ++ +   KL   +R QA   AI+ G I
Sbjct: 172 AEHTVKNHVKNILSKLGVQDRTQAATAAIQRGII 205


>gi|301155137|emb|CBW14601.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Haemophilus parainfluenzae T3T1]
          Length = 219

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I +            +V++E      Q        
Sbjct: 82  LRAEGVDARILILTVSDAKNDIFTLIDSGADGYLLKDTEPDVLLEQIKRIAQGEVILSDS 141

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L   K       +LT+RE   L+L   G ++++IA +L +S  TV  ++ +   KL
Sbjct: 142 IKNLLLERKHTVDPMDSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 201

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 202 NVHSRVAATVL 212


>gi|302535180|ref|ZP_07287522.1| two component system response regulator [Streptomyces sp. C]
 gi|302444075|gb|EFL15891.1| two component system response regulator [Streptomyces sp. C]
          Length = 225

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++  +            + T   E   K       LT+RE   + L   G ++ 
Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPMLPTTAAEPENKE---IERLTDREREVMLLVAQGLSNG 175

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L LS  TV  ++G    KL   +R+Q +  A   G +
Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|239932265|ref|ZP_04689218.1| two-component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291440629|ref|ZP_06580019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343524|gb|EFE70480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +       
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|254410427|ref|ZP_05024206.1| transcriptional regulator, LuxR family protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182633|gb|EDX77618.1| transcriptional regulator, LuxR family protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 244

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 71/226 (31%), Gaps = 14/226 (6%)

Query: 11  SSSLQELSPRLH---LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
           + +  E   RL     +    +A+ + L  +N        Q         D +       
Sbjct: 19  ADARDEQELRLQIMDELGEHFQAQYWGLCLLNEDSHAAEVQM----QGGADTEGFVADYN 74

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
            +    D  L +      P   + +     +    +L             +  P+  G  
Sbjct: 75  KLARKVDPVLRYVIEHHAPAH-EQLVFSPEVWKQSELYQNCYARYDHEHVMMGPIVSGGR 133

Query: 128 KNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSC 181
             G V F       A +   + +  G C  + +    L  +     S  A  LT RE   
Sbjct: 134 LMGGVYFARASDAPAFDYKDLADLTGLCLHLSSRLATLRSQAKKSQSLVANRLTPREREI 193

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             L   G T+ EI  +L ++ ++V   L     KL+   R + +A+
Sbjct: 194 ADLVAKGLTNAEIGAELWITQNSVKQALKRMFRKLNVSARAELVAR 239


>gi|254443406|ref|ZP_05056882.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198257714|gb|EDY82022.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 224

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L ++  S  + LTERE   L+    G +++EIA  L LS  TV ++L S   KL   +R
Sbjct: 151 RLEER--SKRQQLTERERDVLEYLIKGRSNKEIASSLYLSEETVKSHLKSLFAKLKVRDR 208

Query: 222 IQAIAKAIRFGYI 234
            +A  +AIR G +
Sbjct: 209 TEAAIEAIRHGIV 221


>gi|125718640|ref|YP_001035773.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323350296|ref|ZP_08085961.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498557|gb|ABN45223.1| Two-component response transcriptional regulator (CheY-like
           receiver and HTH DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322123481|gb|EFX95152.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991776|gb|EGC23708.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|325697714|gb|EGD39599.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327467206|gb|EGF12710.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 210

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|156744138|ref|YP_001434267.1| ATP-dependent transcription regulator LuxR [Roseiflexus
           castenholzii DSM 13941]
 gi|156235466|gb|ABU60249.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Roseiflexus castenholzii DSM 13941]
          Length = 309

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 10/143 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +++     S+    +     +   AG    V L   +    +            ++ A G
Sbjct: 176 LEQAAGNSSNAIRMLARALEIG-RAGGYVRVFLDEGEEMRTLLAQLRRDDFAASLLAAFG 234

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +          +S+    LTERE   L+L  +G ++ EIAEKL LSV TV  ++  
Sbjct: 235 KPAHI---------DQSALIEPLTEREMDVLKLVAEGLSNPEIAEKLYLSVGTVKTHVKH 285

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+ A  KA   G I
Sbjct: 286 IYGKLGVDDRVTAAGKARELGLI 308


>gi|225025240|ref|ZP_03714432.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC
           23834]
 gi|224941998|gb|EEG23207.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC
           23834]
          Length = 215

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 43/94 (45%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
               + +        ++      +  + S+   +LT+RE   L+    G +++ IA ++ 
Sbjct: 117 EAIRQAVAGQQTVSPEMNNAGQSIPPEHSAILDSLTQRERDVLRYVAGGISNKMIARRMF 176

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LS +TV A++ +   KL+  NR++A   A   G 
Sbjct: 177 LSENTVKAHMQNIFRKLNIDNRVRAAVYARELGL 210


>gi|167897499|ref|ZP_02484901.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
          Length = 281

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + +    D      L                       D  +    + 
Sbjct: 63  LLRLMGFATFAYFALEFTRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 120

Query: 84  LLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W   Q      + G       +R+       +G+ + + +   +      FT+  
Sbjct: 121 SMPVVWDLRQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPVPGTRVHAFASFTAPR 180

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 181 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASARERAAERLTPFERELLVGIAEGASDK 239

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 240 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 281


>gi|23098617|ref|NP_692083.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776844|dbj|BAC13118.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 209

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LTERE   L   G+G T++EI EKL + V TV  ++ +   KLD  +R QA     R
Sbjct: 145 HDDLTEREREVLLCIGEGLTNQEIGEKLYIGVKTVKTHVSNILSKLDVHDRTQAAVYVHR 204

Query: 231 FGYI 234
              +
Sbjct: 205 NKLL 208


>gi|329940013|ref|ZP_08289295.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329300839|gb|EGG44735.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 225

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG    +         +      +     +         + +     +      A   
Sbjct: 101 LRAGARGYLTKDAGGEEILRAVRSVVSGQAGLAPSVQRRLLERLDRPGTVVTSPEEAPDG 160

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L  +G +++EIA +L +S  TV  ++ +   K    +R QA+  A R G 
Sbjct: 161 LTVREVEVLVLIAEGLSNQEIARRLHVSTATVKTHINNMFAKTGLKDRAQAVRYAFRKGL 220

Query: 234 I 234
           +
Sbjct: 221 V 221


>gi|317129617|ref|YP_004095899.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474565|gb|ADU31168.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 207

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +       LT RE   L L G G T+++IAE L + + TV  ++     KL+  +R QA 
Sbjct: 139 RSKPKHEELTNREREVLALIGQGKTNKDIAETLHIGIKTVKTHVSHILSKLEVEDRTQAA 198

Query: 226 AKAIRFGY 233
             A +   
Sbjct: 199 IYANKNKL 206


>gi|228993223|ref|ZP_04153144.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442]
 gi|229006827|ref|ZP_04164460.1| Spore germination protein gerE [Bacillus mycoides Rock1-4]
 gi|229087050|ref|ZP_04219202.1| Spore germination protein gerE [Bacillus cereus Rock3-44]
 gi|228696243|gb|EEL49076.1| Spore germination protein gerE [Bacillus cereus Rock3-44]
 gi|228754449|gb|EEM03861.1| Spore germination protein gerE [Bacillus mycoides Rock1-4]
 gi|228766549|gb|EEM15191.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442]
          Length = 74

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|282862196|ref|ZP_06271259.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563221|gb|EFB68760.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 233

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 33/231 (14%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +           R+          LD            G
Sbjct: 22  VDDHPMWRDAVARDLSESGFDVVATAGDGPGAVRRARAAVPDVLVLDLN--------LPG 73

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++ S   L V +       A +   V+ G        
Sbjct: 74  MPGVQVCKE--------------LVGSHPALRVLVLSASGEHADVLEAVKSGATGYLLKS 119

Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAA------RNLTERETSCL 182
            +++ L  A             G    V+ ++  L    + AA        LTERET  L
Sbjct: 120 ASTQELTDAVRATAAGDPVFTPGLAGLVLGEYRRLASDPAPAASDEPKAPQLTERETEVL 179

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 180 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIETGL 230


>gi|290958411|ref|YP_003489593.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647937|emb|CBG71042.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 223

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + R      LTERE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q
Sbjct: 147 SEPRHKELERLTEREREVMILVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQ 206

Query: 224 AIAKAIRFGYI 234
            +  A   G +
Sbjct: 207 VVVLAYETGLV 217


>gi|307151762|ref|YP_003887146.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306981990|gb|ADN13871.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 210

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               V+ +      +++    NL+ERE   L+L  +G ++ EIAE+L LS +T+  ++  
Sbjct: 128 IARLVLGNLKAPAPQQNLKISNLSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRG 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+QA   A+R G +
Sbjct: 188 IMNKLAVDDRVQAAVVALRSGLV 210


>gi|297579900|ref|ZP_06941827.1| predicted protein [Vibrio cholerae RC385]
 gi|297535546|gb|EFH74380.1| predicted protein [Vibrio cholerae RC385]
          Length = 224

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 47/160 (29%), Gaps = 11/160 (6%)

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D F+         I+               L   L G       I        H      
Sbjct: 73  DPFVAAVLQSGRGIMAFMDPYNHPDYGKRLL---LAGQHGEKKAIFLTSFGNRH------ 123

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                  +    ++  H                       LT+RE   L     G ++ E
Sbjct: 124 --PSSDEIDTLYLLTPHLYSASDAIAHQSQQLHLPPPLNPLTDRECELLPWLKLGKSNWE 181

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           I+  L +S  TV  +L +   KL+  NR  AIAKAI  G+
Sbjct: 182 ISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|254444586|ref|ZP_05058062.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198258894|gb|EDY83202.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 200

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   LQ+  +G++++EIA+KLGLSV TV+ +  +   KLD  N       A++ 
Sbjct: 132 DTLTEREREVLQMIAEGHSTKEIAKKLGLSVKTVDNHRTNMMRKLDLHNVASITRYAMQN 191

Query: 232 GYI 234
           G I
Sbjct: 192 GLI 194


>gi|330821614|ref|YP_004350476.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373609|gb|AEA64964.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 509

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLEL 163
                +  +  +         ++  S+      E+++       +A      +I     +
Sbjct: 358 RDCLISADSVSIHDQDCILFALLDISDRKRSETEMVLAIETAMQDASWFSRMLIEKLANV 417

Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +  S  A      LT RE     L   G   +EIA KL LS +TV  ++ +   KLD  
Sbjct: 418 RRTNSPDAGAQLSDLTGREREVFDLLCRGLADKEIAIKLNLSPNTVRNHVATIYGKLDVH 477

Query: 220 NRIQAIAKAIRFGY 233
           +R +AI  A   G+
Sbjct: 478 SRTEAIVWARERGF 491


>gi|298491629|ref|YP_003721806.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233547|gb|ADI64683.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 238

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LTERE   LQL  +GY++  IA++L +++ TV  ++ +   KL A +R QA  +A+R G
Sbjct: 176 SLTERELEVLQLIVEGYSNAVIAQRLFITIGTVKTHVRNILNKLCADDRTQAAVRALRSG 235

Query: 233 YI 234
            +
Sbjct: 236 IV 237


>gi|291438083|ref|ZP_06577473.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340978|gb|EFE67934.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 235

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q +  A   
Sbjct: 166 ERLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 225

Query: 232 GYI 234
           G +
Sbjct: 226 GLV 228


>gi|295680777|ref|YP_003609351.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440672|gb|ADG19840.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 222

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L  +     I  S   + A   ++        +        K  +     LT RE   L 
Sbjct: 110 LPRNAMPAEIVASIEAVAAGLCVLTPDILARLLAETRPSRQKAPAEPFEALTLREIEVLA 169

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  DG  ++EIA +L +S +TV  +L S   KL A NR +A+   +R G+I
Sbjct: 170 MLADGLGNKEIARQLDISDNTVKFHLSSIFGKLGATNRTEAVMLGMRHGFI 220


>gi|256827097|ref|YP_003151056.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583240|gb|ACU94374.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 215

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE     L   GYT++E A+KL +SV TV  +      KL   +R + +  A+
Sbjct: 149 PYHELSSREFEIFSLLAQGYTNKEAADKLFISVKTVETHRSKIYAKLGVNSRAELVHLAL 208

Query: 230 RFGYI 234
           ++  +
Sbjct: 209 KYHLL 213


>gi|25027912|ref|NP_737966.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259506306|ref|ZP_05749208.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23493195|dbj|BAC18166.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259166086|gb|EEW50640.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 221

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LTERE     L G GYT+ EIA+ L LS  TV  + G   +KL   +R+QA+ +A
Sbjct: 155 PELDRLTEREREVFVLVGRGYTNPEIAQALHLSESTVKTHFGRVLMKLGLTSRVQAVIRA 214

Query: 229 IRFGYI 234
              G +
Sbjct: 215 YELGLV 220


>gi|269836276|ref|YP_003318504.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785539|gb|ACZ37682.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 223

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAE 196
             LA      +     +++ +F  L ++         L+ RE   L+L     +++EIA 
Sbjct: 118 RGLARGEAAISRRMAARILEEFARLERQAEILEPDGGLSPREVEVLELVALRLSNKEIAA 177

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L +S HTV  +L +   KL   +R QA A A+  G I
Sbjct: 178 RLSISEHTVKNHLKNILAKLQLSSRRQAAAYAVAHGLI 215


>gi|18413618|dbj|BAB84309.1| putative nitrate/nitrite response regulator [Halomonas
           halodenitrificans]
          Length = 221

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 19/144 (13%)

Query: 109 EGGLLPFAG--IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGAC--------- 153
                 FAG  + F V          + +         +  + ++               
Sbjct: 76  RLRSGGFAGRVVMFTVSDHEEDVVNALQSGADGYLLKDMDPDEMVRQLRQASLGRMVISE 135

Query: 154 --YQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               ++ + L   + + +A    +LT+RE   L+    G +++ IA KL ++  TV  ++
Sbjct: 136 SLTALLAEALRSHRNQPAAPDIHSLTQREREILRELAAGLSNKMIARKLEITEGTVKVHV 195

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL+  +R++A   A++ G 
Sbjct: 196 KHLLKKLNLRSRVEAAVWAVQEGI 219


>gi|297198515|ref|ZP_06915912.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197716175|gb|EDY60209.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +       
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|295402188|ref|ZP_06812146.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975779|gb|EFG51399.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 211

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            L+ RE    +L G+G T++EIA +L LS+ TV  ++     KL   +R Q    AI+ 
Sbjct: 149 PLSPRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKH 207


>gi|291302327|ref|YP_003513605.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571547|gb|ADD44512.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 222

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQL 184
              + +V  ++    + +     A         D  E  K+R + +   L+ RE+  L+L
Sbjct: 105 AGASAFVPKSAPSDDVVSAARHAATTPNAFTAADLAEAMKRRLTPSGPQLSPRESQVLKL 164

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG +   IA++L +S  T   ++     KL A NR QA+  A++ G +
Sbjct: 165 LADGMSVAGIAKQLYVSESTAKTHISKLYEKLGAGNRAQALMTALKLGLL 214


>gi|225180998|ref|ZP_03734445.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168195|gb|EEG76999.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 219

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K +S    L++RE   L L G+G T++EI  +L LS  TV  ++     KL   NR QA
Sbjct: 142 EKAASQISGLSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNHVSRILDKLGVSNRSQA 201

Query: 225 IAKAIRFGYI 234
            A   R   I
Sbjct: 202 AAFMARRSVI 211


>gi|70726115|ref|YP_253029.1| hypothetical protein SH1114 [Staphylococcus haemolyticus JCSC1435]
 gi|68446839|dbj|BAE04423.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 207

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L     G T++EIA  L +S  T+  ++     KL   +R QA   AI   
Sbjct: 146 KLSKREIEVLAEMVKGKTNKEIANTLFVSEKTIKTHVSHIFNKLSVTDRTQAAIYAIENK 205

Query: 233 YI 234
            +
Sbjct: 206 LV 207


>gi|290961118|ref|YP_003492300.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260650644|emb|CBG73760.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 215

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 151 GACYQVITDFLELFKKRSSA-------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           G    V+ ++  L  + + A       A  LT+RET  L+L   G + ++IAE+L +S  
Sbjct: 123 GLAGLVLGEYRRLASEPAPAPGADEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHR 182

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 183 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|158339385|ref|YP_001520562.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158309626|gb|ABW31243.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 208

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   LQL   G +++EIA  L +S  TV  ++ +   KL   +R QA+  A++ G 
Sbjct: 145 LTERELEVLQLLSKGNSNQEIAAALTISEGTVKFHINNILSKLGVKDRTQAVIMALKKGL 204


>gi|148994461|ref|ZP_01823662.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|168488084|ref|ZP_02712283.1| response regulator [Streptococcus pneumoniae SP195]
 gi|168490693|ref|ZP_02714836.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|168494570|ref|ZP_02718713.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|225860419|ref|YP_002741928.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|147927210|gb|EDK78245.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|183572895|gb|EDT93423.1| response regulator [Streptococcus pneumoniae SP195]
 gi|183575039|gb|EDT95567.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183575541|gb|EDT96069.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|225726539|gb|ACO22390.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|332075238|gb|EGI85708.1| response regulator [Streptococcus pneumoniae GA17570]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA+ L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|119491420|ref|ZP_01623439.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
 gi|119453415|gb|EAW34578.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
          Length = 209

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L+    G ++ +IA  L +   TV +++     KLD  +R QA+  A++ 
Sbjct: 145 PELSERELEVLRSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKR 204

Query: 232 GYIC 235
           G +C
Sbjct: 205 GIVC 208


>gi|312867898|ref|ZP_07728103.1| putative oxygen regulatory protein NreC [Streptococcus
           parasanguinis F0405]
 gi|311096653|gb|EFQ54892.1| putative oxygen regulatory protein NreC [Streptococcus
           parasanguinis F0405]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A R
Sbjct: 142 HDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFR 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|312111451|ref|YP_003989767.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311216552|gb|ADP75156.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 211

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            L+ RE    +L G+G T++EIA +L LS+ TV  ++     KL   +R Q    AI+ 
Sbjct: 149 PLSPRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKH 207


>gi|227834277|ref|YP_002835984.1| two-component response regulator ChrA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183011|ref|ZP_06042432.1| two-component response regulator ChrA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227455293|gb|ACP34046.1| two-component response regulator ChrA [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 206

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V+  A G           L ++ +     L+ RE   LQ  
Sbjct: 97  AGALGYLLKDAPEDTLHTAVLDTAAGKRTLAPEVTNLLAERLAQPETALSPRELEILQAL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++++IA++L +S  TV  +L     KL    R  A++ A     I
Sbjct: 157 STGASNKQIAQRLFISEATVKTHLIHVYQKLGVETRTAAVSAARERKLI 205


>gi|15900310|ref|NP_344914.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15902388|ref|NP_357938.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|111657155|ref|ZP_01407935.1| hypothetical protein SpneT_02001620 [Streptococcus pneumoniae
           TIGR4]
 gi|116517140|ref|YP_815865.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148988147|ref|ZP_01819610.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148996798|ref|ZP_01824516.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006139|ref|ZP_01829868.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012131|ref|ZP_01833240.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|168485529|ref|ZP_02710037.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|168576782|ref|ZP_02722640.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|182683352|ref|YP_001835099.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|221231258|ref|YP_002510410.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225856124|ref|YP_002737635.1| response regulator [Streptococcus pneumoniae P1031]
 gi|225858242|ref|YP_002739752.1| response regulator [Streptococcus pneumoniae 70585]
 gi|298231095|ref|ZP_06964776.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254642|ref|ZP_06978228.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502187|ref|YP_003724127.1| LuxR family response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255739|ref|ZP_07341782.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303259462|ref|ZP_07345439.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262993|ref|ZP_07348927.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303267350|ref|ZP_07353209.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303269845|ref|ZP_07355590.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|307067043|ref|YP_003876009.1| CheY-like receiver/HTH DNA-binding domain-containing response
           regulator [Streptococcus pneumoniae AP200]
 gi|307126599|ref|YP_003878630.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|5830527|emb|CAB54571.1| response regulator [Streptococcus pneumoniae]
 gi|14971857|gb|AAK74554.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15457902|gb|AAK99148.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116077716|gb|ABJ55436.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147757373|gb|EDK64412.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147762495|gb|EDK69456.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763733|gb|EDK70667.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147926611|gb|EDK77684.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|182628686|gb|ACB89634.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|183571158|gb|EDT91686.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|183577579|gb|EDT98107.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|220673718|emb|CAR68214.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225722011|gb|ACO17865.1| response regulator [Streptococcus pneumoniae 70585]
 gi|225724954|gb|ACO20806.1| response regulator [Streptococcus pneumoniae P1031]
 gi|298237782|gb|ADI68913.1| LuxR family response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793635|emb|CBW36018.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301801302|emb|CBW33982.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302597299|gb|EFL64402.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302635884|gb|EFL66385.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639396|gb|EFL69854.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302640613|gb|EFL71015.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302643121|gb|EFL73409.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|306408580|gb|ADM84007.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Streptococcus pneumoniae AP200]
 gi|306483661|gb|ADM90530.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|332076827|gb|EGI87289.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332077675|gb|EGI88136.1| response regulator [Streptococcus pneumoniae GA41301]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA+ L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|302550470|ref|ZP_07302812.1| two component response regulator [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468088|gb|EFL31181.1| two component response regulator [Streptomyces viridochromogenes
           DSM 40736]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178
           +R G     Y     + L  A   +   H     +V    L   +  S  AR  +LT+RE
Sbjct: 97  LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVADALLSQEEANSGPARAGSLTDRE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 210


>gi|239932122|ref|ZP_04689075.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440492|ref|ZP_06579882.1| two component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291343387|gb|EFE70343.1| two component response regulator [Streptomyces ghanaensis ATCC
           14672]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERE 178
           +R G     Y     + L  A   +   H      +   L   ++ +     A +LTERE
Sbjct: 97  LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQAEVAGALLSQEESAPGQGRAGSLTERE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211


>gi|311070407|ref|YP_003975330.1| two-component response regulator YxjM [Bacillus atrophaeus 1942]
 gi|310870924|gb|ADP34399.1| two-component response regulator (YxjM) [Bacillus atrophaeus 1942]
          Length = 218

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAE 196
              +    I       ++I++     ++      A   T+RE   LQ    G  +EEIA+
Sbjct: 120 RAASRGEAIFRTVTAAKIISETFRAKQQPYTEKLAEPFTKRELEVLQQMAYGLRNEEIAD 179

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KL +S  TV  ++     K +A +R QA+  AIR G +
Sbjct: 180 KLFVSESTVKTHVHRILQKCEAQDRTQAVVFAIRNGIV 217


>gi|165975516|ref|YP_001651109.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250537|ref|ZP_07336734.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251881|ref|ZP_07338052.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244860|ref|ZP_07526959.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247035|ref|ZP_07529089.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249257|ref|ZP_07531254.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251580|ref|ZP_07533487.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253814|ref|ZP_07535668.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256079|ref|ZP_07537867.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258270|ref|ZP_07540013.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260511|ref|ZP_07542205.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165875617|gb|ABY68665.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649311|gb|EFL79496.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650525|gb|EFL80684.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854305|gb|EFM86511.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856487|gb|EFM88636.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858781|gb|EFM90840.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861044|gb|EFM93050.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863298|gb|EFM95238.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865501|gb|EFM97396.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867730|gb|EFM99575.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869823|gb|EFN01606.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 209

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ---VI 157
              L    +    I   V         ++                ++E      Q   V+
Sbjct: 69  LRALRKHGIDSRIIVLTVSDEQSDIFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVL 128

Query: 158 TDFL--ELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           ++ +   L ++R        LT+RE   LQ    G ++++IA +L +S  TV  ++ +  
Sbjct: 129 SESVKQHLLERRPENDPLSVLTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLL 188

Query: 214 VKLDAVNRIQAIAK 227
            KL+  +R+ A   
Sbjct: 189 RKLNVHSRVAATVL 202


>gi|158333709|ref|YP_001514881.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158303950|gb|ABW25567.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 209

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                  LT RET  L L  +G ++ EIAE L +S  TV  ++ S   +L+  +R QA  
Sbjct: 142 EPPELAELTPRETEVLALIAEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAI 201

Query: 227 KA 228
            A
Sbjct: 202 LA 203


>gi|113954826|ref|YP_730328.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882177|gb|ABI47135.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 234

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   ++    G  + EIA+ L +S  TV +++ +   KL   +R QA   A+  
Sbjct: 168 DPLSERELDVIRCIIRGMRNIEIADALFISSETVKSHVSTVIQKLGVRDRTQAAVFAMTH 227

Query: 232 GYI 234
           G I
Sbjct: 228 GLI 230


>gi|311896797|dbj|BAJ29205.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 229

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE     L   G ++ EIA +L LS  TV  ++G    KL   +R+QA+  A   G
Sbjct: 162 PLTDREREVFLLVSQGLSNGEIAARLVLSEATVKTHVGRILAKLGLRDRVQAVVLAYENG 221

Query: 233 YI 234
            +
Sbjct: 222 LV 223


>gi|270293338|ref|ZP_06199547.1| DNA-binding response regulator VraR [Streptococcus sp. M143]
 gi|270278187|gb|EFA24035.1| DNA-binding response regulator VraR [Streptococcus sp. M143]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 50/113 (44%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +  G         +++ L+ A   +     A  Q ++  +E  +        LT RE   
Sbjct: 93  LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTARERDV 152

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 153 LQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|227489040|ref|ZP_03919356.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227090985|gb|EEI26297.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 212

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +       LT RE   L+L   G +++EI   L LS  TV ++L     KLDA +R
Sbjct: 140 RLMTRVRGPKTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSR 199

Query: 222 IQAIAKAIRFGYI 234
             A+A A   G +
Sbjct: 200 TAAVAAAREQGVL 212


>gi|149018085|ref|ZP_01834544.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168482621|ref|ZP_02707573.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|147931649|gb|EDK82627.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|172043787|gb|EDT51833.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|332203553|gb|EGJ17620.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  LPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA+ L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|257057262|ref|YP_003135094.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587134|gb|ACU98267.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 223

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 39/84 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V            +    LTERE   L L  +GY+++EIA++L +S  TV  ++ 
Sbjct: 136 FLDPAVARRLTRQMVSPPTGVGALTERERDVLILIANGYSNKEIADELVISERTVRTHVS 195

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KL   +R QA   A+R G +
Sbjct: 196 SILRKLRLSSRTQAALVAVREGLV 219


>gi|327462458|gb|EGF08783.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|332362992|gb|EGJ40781.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332364570|gb|EGJ42339.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
 gi|332366354|gb|EGJ44105.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|311280537|ref|YP_003942768.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308749732|gb|ADO49484.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 226

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 68/214 (31%), Gaps = 10/214 (4%)

Query: 15  QELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             +  R L  I   I   +   Y +N              LHN   ++            
Sbjct: 11  DAIIARCLQTISQLIPLSSAVFYRVNKR-----TTPENYILHNISENTHQQYLEH-FQPL 64

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  L   +    P I  +     + +                      +R        + 
Sbjct: 65  DPLLP--SRFTHPSITMAGMTPGLYDRYRHYYHDFMLPNNVRDMTEIFIRRDRRIVAGIS 122

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                   ++E  + A      V     EL +   + +  LT +E   + +  +G +++ 
Sbjct: 123 LMR-DTPFSSEERLRAQAVLPLVELAIHELLQDDDALSEMLTAKEREIVSMVREGASNKL 181

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           IA +L +S+ TV  +L +   K + VNR + +++
Sbjct: 182 IARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215


>gi|190149328|ref|YP_001967853.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262641|ref|ZP_07544271.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914459|gb|ACE60711.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872064|gb|EFN03778.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 209

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ---VI 157
              L    +    +   V         ++                ++E      Q   V+
Sbjct: 69  LRALRKHGIDSRIVVLTVSDEQSDVFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVL 128

Query: 158 TDFL--ELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           ++ +   L ++R        LT+RE   LQ    G ++++IA +L +S  TV  ++ +  
Sbjct: 129 SESVKQHLLERRPENDPLSVLTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLL 188

Query: 214 VKLDAVNRIQAIAK 227
            KL+  +R+ A   
Sbjct: 189 RKLNVHSRVAATVL 202


>gi|163735991|ref|ZP_02143417.1| hypothetical protein RLO149_07254 [Roseobacter litoralis Och 149]
 gi|161390716|gb|EDQ15059.1| hypothetical protein RLO149_07254 [Roseobacter litoralis Och 149]
          Length = 320

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 11/229 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++ ++ ELS  +  I   +  +NFA++ +            IC   N             
Sbjct: 57  EADNVTELSNSMWKITTTLAFQNFAIFVLKQGPGMAF-NPKICTSCN--AKWVARYVDQG 113

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
             Y D  +   +      ++  +                +   +   G+ F +       
Sbjct: 114 YQYVDPVMTKASENDGCFLYSDLP--VGSPVVETFWQDADHHRIGRNGVCFCIARRDGSK 171

Query: 130 GYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
             V F+++      + I      + +         F         +   LTE E   L +
Sbjct: 172 IGVSFSTQDTANKVQEIFYANSYDMNFIAQIAADVFCYAATDTLLSDDTLTEAELRFLYV 231

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
                 + + A K+  S  +  +   S   KL      QA+A+A   G+
Sbjct: 232 LST-SPNPQDAIKVTSSFGSNTSLQASIRAKLGVETVYQAVARAAARGW 279


>gi|87123599|ref|ZP_01079450.1| possible transcriptional regulator [Synechococcus sp. RS9917]
 gi|86169319|gb|EAQ70575.1| possible transcriptional regulator [Synechococcus sp. RS9917]
          Length = 92

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              S + +L+ RE   ++L  +G T++EIAE+L +S  TV+ ++ +   K  A NR+  +
Sbjct: 6   DSGSPSIDLSTREIEIVELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGAKNRVALL 65

Query: 226 AKAIRFGYIC 235
             A+  G IC
Sbjct: 66  NWAMDHGKIC 75


>gi|295695123|ref|YP_003588361.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295410725|gb|ADG05217.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 216

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 149 AHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           A     +++T      +  ++  A+ LT RE   L L   G ++ EIA+ L +S +TV  
Sbjct: 127 AEEVAARLVTTLAAPAQGSAAEVAKRLTPREREILGLIARGRSNREIAQALTISENTVKN 186

Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230
           +L +   KLD  NR Q  A A+R
Sbjct: 187 HLKNIMAKLDVKNRAQLAALAVR 209


>gi|242279313|ref|YP_002991442.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242122207|gb|ACS79903.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           salexigens DSM 2638]
          Length = 217

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +V+++  +  +   +     LT RE   L+L   G +++ IAE++ +S  TV  ++ 
Sbjct: 132 IARKVLSELSQPGEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVSEATVRTHMT 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           S   KL   NR++A   A+R G 
Sbjct: 192 SILSKLHLANRVEATLYALREGI 214


>gi|269929142|ref|YP_003321463.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788499|gb|ACZ40641.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 212

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +       LT RE   L L   G  ++EIA +L ++  TV  +  +   KLD   R +A+
Sbjct: 142 RGEPVEEELTARELDVLTLMARGLRNKEIAYELSITERTVKFHANAIYRKLDVSGRTEAV 201

Query: 226 AKAIRFGYI 234
           +KAI+ G +
Sbjct: 202 SKAIQRGLV 210


>gi|159898087|ref|YP_001544334.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891126|gb|ABX04206.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 257

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAE 196
           +V+ E      +++T F  L     +           L++RE   L+    G T+++IA+
Sbjct: 130 DVMFEDPRVADRILTQFRGLQTGIVAEPDLDISLFSPLSDREIEVLEHIASGATNKDIAD 189

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L +S  TV  ++ S   KL   +R QA+  A+R G+I
Sbjct: 190 ALKISTQTVKNHISSILRKLSLNDRTQAVLYALRRGWI 227


>gi|328945025|gb|EGG39181.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|30022580|ref|NP_834211.1| germination protein gerE [Bacillus cereus ATCC 14579]
 gi|30264558|ref|NP_846935.1| germination protein GerE [Bacillus anthracis str. Ames]
 gi|47530023|ref|YP_021372.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187380|ref|YP_030632.1| germination protein GerE [Bacillus anthracis str. Sterne]
 gi|49481503|ref|YP_038542.1| germination protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141012|ref|YP_085817.1| germination protein [Bacillus cereus E33L]
 gi|65321856|ref|ZP_00394815.1| COG2771: DNA-binding HTH domain-containing proteins [Bacillus
           anthracis str. A2012]
 gi|75760738|ref|ZP_00740760.1| Germination protein gerE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118479654|ref|YP_896805.1| germination protein [Bacillus thuringiensis str. Al Hakam]
 gi|163942232|ref|YP_001647116.1| LuxR family transcriptional regulator [Bacillus weihenstephanensis
           KBAB4]
 gi|165871523|ref|ZP_02216170.1| germination protein GerE [Bacillus anthracis str. A0488]
 gi|167635626|ref|ZP_02393938.1| germination protein GerE [Bacillus anthracis str. A0442]
 gi|167641680|ref|ZP_02399925.1| germination protein GerE [Bacillus anthracis str. A0193]
 gi|170708363|ref|ZP_02898807.1| germination protein GerE [Bacillus anthracis str. A0389]
 gi|177653107|ref|ZP_02935394.1| germination protein GerE [Bacillus anthracis str. A0174]
 gi|190566971|ref|ZP_03019887.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I]
 gi|196034356|ref|ZP_03101765.1| germination protein GerE [Bacillus cereus W]
 gi|196039336|ref|ZP_03106642.1| germination protein GerE [Bacillus cereus NVH0597-99]
 gi|196044720|ref|ZP_03111954.1| germination protein GerE [Bacillus cereus 03BB108]
 gi|206969521|ref|ZP_03230475.1| germination protein GerE [Bacillus cereus AH1134]
 gi|206976107|ref|ZP_03237017.1| germination protein GerE [Bacillus cereus H3081.97]
 gi|217961984|ref|YP_002340554.1| germination protein GerE [Bacillus cereus AH187]
 gi|218231866|ref|YP_002369296.1| germination protein GerE [Bacillus cereus B4264]
 gi|218899656|ref|YP_002448067.1| germination protein GerE [Bacillus cereus G9842]
 gi|225866473|ref|YP_002751851.1| germination protein GerE [Bacillus cereus 03BB102]
 gi|227817270|ref|YP_002817279.1| germination protein GerE [Bacillus anthracis str. CDC 684]
 gi|228903018|ref|ZP_04067157.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222]
 gi|228910323|ref|ZP_04074139.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200]
 gi|228917128|ref|ZP_04080686.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228923243|ref|ZP_04086533.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228929537|ref|ZP_04092556.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935809|ref|ZP_04098621.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228941677|ref|ZP_04104224.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228948213|ref|ZP_04110497.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228954769|ref|ZP_04116790.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960765|ref|ZP_04122403.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967593|ref|ZP_04128616.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974604|ref|ZP_04135170.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981199|ref|ZP_04141499.1| Spore germination protein gerE [Bacillus thuringiensis Bt407]
 gi|228987740|ref|ZP_04147851.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229013700|ref|ZP_04170829.1| Spore germination protein gerE [Bacillus mycoides DSM 2048]
 gi|229032144|ref|ZP_04188120.1| Spore germination protein gerE [Bacillus cereus AH1271]
 gi|229048205|ref|ZP_04193774.1| Spore germination protein gerE [Bacillus cereus AH676]
 gi|229062182|ref|ZP_04199506.1| Spore germination protein gerE [Bacillus cereus AH603]
 gi|229072004|ref|ZP_04205214.1| Spore germination protein gerE [Bacillus cereus F65185]
 gi|229081752|ref|ZP_04214245.1| Spore germination protein gerE [Bacillus cereus Rock4-2]
 gi|229093586|ref|ZP_04224687.1| Spore germination protein gerE [Bacillus cereus Rock3-42]
 gi|229098957|ref|ZP_04229892.1| Spore germination protein gerE [Bacillus cereus Rock3-29]
 gi|229105124|ref|ZP_04235775.1| Spore germination protein gerE [Bacillus cereus Rock3-28]
 gi|229111961|ref|ZP_04241505.1| Spore germination protein gerE [Bacillus cereus Rock1-15]
 gi|229117986|ref|ZP_04247346.1| Spore germination protein gerE [Bacillus cereus Rock1-3]
 gi|229129784|ref|ZP_04258751.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4]
 gi|229135330|ref|ZP_04264123.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196]
 gi|229141231|ref|ZP_04269770.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26]
 gi|229147058|ref|ZP_04275418.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24]
 gi|229152693|ref|ZP_04280880.1| Spore germination protein gerE [Bacillus cereus m1550]
 gi|229158108|ref|ZP_04286177.1| Spore germination protein gerE [Bacillus cereus ATCC 4342]
 gi|229169225|ref|ZP_04296939.1| Spore germination protein gerE [Bacillus cereus AH621]
 gi|229180765|ref|ZP_04308103.1| Spore germination protein gerE [Bacillus cereus 172560W]
 gi|229186733|ref|ZP_04313891.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1]
 gi|229192698|ref|ZP_04319657.1| Spore germination protein gerE [Bacillus cereus ATCC 10876]
 gi|229602349|ref|YP_002868773.1| germination protein GerE [Bacillus anthracis str. A0248]
 gi|254724584|ref|ZP_05186367.1| germination protein GerE [Bacillus anthracis str. A1055]
 gi|254736592|ref|ZP_05194298.1| germination protein GerE [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741630|ref|ZP_05199317.1| germination protein GerE [Bacillus anthracis str. Kruger B]
 gi|254754772|ref|ZP_05206807.1| germination protein GerE [Bacillus anthracis str. Vollum]
 gi|254757604|ref|ZP_05209631.1| germination protein GerE [Bacillus anthracis str. Australia 94]
 gi|296504976|ref|YP_003666676.1| germination protein gerE [Bacillus thuringiensis BMB171]
 gi|301056000|ref|YP_003794211.1| germination protein [Bacillus anthracis CI]
 gi|29898138|gb|AAP11412.1| Germination protein gerE [Bacillus cereus ATCC 14579]
 gi|30259216|gb|AAP28421.1| germination protein GerE [Bacillus anthracis str. Ames]
 gi|47505171|gb|AAT33847.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181307|gb|AAT56683.1| germination protein GerE [Bacillus anthracis str. Sterne]
 gi|49333059|gb|AAT63705.1| germination protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51974481|gb|AAU16031.1| germination protein [Bacillus cereus E33L]
 gi|74491766|gb|EAO54960.1| Germination protein gerE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118418879|gb|ABK87298.1| germination protein [Bacillus thuringiensis str. Al Hakam]
 gi|163864429|gb|ABY45488.1| transcriptional regulator, LuxR family [Bacillus weihenstephanensis
           KBAB4]
 gi|164712820|gb|EDR18350.1| germination protein GerE [Bacillus anthracis str. A0488]
 gi|167510387|gb|EDR85788.1| germination protein GerE [Bacillus anthracis str. A0193]
 gi|167529046|gb|EDR91801.1| germination protein GerE [Bacillus anthracis str. A0442]
 gi|170126738|gb|EDS95621.1| germination protein GerE [Bacillus anthracis str. A0389]
 gi|172081631|gb|EDT66702.1| germination protein GerE [Bacillus anthracis str. A0174]
 gi|190561962|gb|EDV15931.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I]
 gi|195992898|gb|EDX56857.1| germination protein GerE [Bacillus cereus W]
 gi|196024208|gb|EDX62881.1| germination protein GerE [Bacillus cereus 03BB108]
 gi|196029963|gb|EDX68564.1| germination protein GerE [Bacillus cereus NVH0597-99]
 gi|206735209|gb|EDZ52377.1| germination protein GerE [Bacillus cereus AH1134]
 gi|206745859|gb|EDZ57256.1| germination protein GerE [Bacillus cereus H3081.97]
 gi|217063730|gb|ACJ77980.1| germination protein GerE [Bacillus cereus AH187]
 gi|218159823|gb|ACK59815.1| germination protein GerE [Bacillus cereus B4264]
 gi|218543532|gb|ACK95926.1| germination protein GerE [Bacillus cereus G9842]
 gi|225786008|gb|ACO26225.1| germination protein GerE [Bacillus cereus 03BB102]
 gi|227004247|gb|ACP13990.1| germination protein GerE [Bacillus anthracis str. CDC 684]
 gi|228590788|gb|EEK48648.1| Spore germination protein gerE [Bacillus cereus ATCC 10876]
 gi|228596746|gb|EEK54408.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1]
 gi|228602743|gb|EEK60226.1| Spore germination protein gerE [Bacillus cereus 172560W]
 gi|228614291|gb|EEK71402.1| Spore germination protein gerE [Bacillus cereus AH621]
 gi|228625337|gb|EEK82095.1| Spore germination protein gerE [Bacillus cereus ATCC 4342]
 gi|228630756|gb|EEK87398.1| Spore germination protein gerE [Bacillus cereus m1550]
 gi|228636446|gb|EEK92916.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24]
 gi|228642272|gb|EEK98564.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26]
 gi|228648128|gb|EEL04170.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196]
 gi|228653700|gb|EEL09571.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4]
 gi|228665435|gb|EEL20917.1| Spore germination protein gerE [Bacillus cereus Rock1-3]
 gi|228671525|gb|EEL26825.1| Spore germination protein gerE [Bacillus cereus Rock1-15]
 gi|228678305|gb|EEL32531.1| Spore germination protein gerE [Bacillus cereus Rock3-28]
 gi|228684455|gb|EEL38398.1| Spore germination protein gerE [Bacillus cereus Rock3-29]
 gi|228689795|gb|EEL43601.1| Spore germination protein gerE [Bacillus cereus Rock3-42]
 gi|228701597|gb|EEL54090.1| Spore germination protein gerE [Bacillus cereus Rock4-2]
 gi|228711163|gb|EEL63128.1| Spore germination protein gerE [Bacillus cereus F65185]
 gi|228717165|gb|EEL68841.1| Spore germination protein gerE [Bacillus cereus AH603]
 gi|228723192|gb|EEL74568.1| Spore germination protein gerE [Bacillus cereus AH676]
 gi|228729150|gb|EEL80150.1| Spore germination protein gerE [Bacillus cereus AH1271]
 gi|228747622|gb|EEL97496.1| Spore germination protein gerE [Bacillus mycoides DSM 2048]
 gi|228772014|gb|EEM20469.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228778399|gb|EEM26666.1| Spore germination protein gerE [Bacillus thuringiensis Bt407]
 gi|228785007|gb|EEM33020.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792084|gb|EEM39663.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228798900|gb|EEM45876.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804889|gb|EEM51487.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228811571|gb|EEM57908.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228817889|gb|EEM63967.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228823866|gb|EEM69686.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830116|gb|EEM75734.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228836449|gb|EEM81800.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228842546|gb|EEM87636.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228849275|gb|EEM94113.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200]
 gi|228856611|gb|EEN01132.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222]
 gi|229266757|gb|ACQ48394.1| germination protein GerE [Bacillus anthracis str. A0248]
 gi|296326028|gb|ADH08956.1| germination protein gerE [Bacillus thuringiensis BMB171]
 gi|300378169|gb|ADK07073.1| germination protein [Bacillus cereus biovar anthracis str. CI]
 gi|324328393|gb|ADY23653.1| germination protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942284|gb|AEA18180.1| germination protein gerE [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 74

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|325695228|gb|EGD37129.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|159898124|ref|YP_001544371.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891163|gb|ABX04243.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 207

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            A   L++RE   LQL   G +++ IA  L +S +T+ +++     KLD  +R +A+A A
Sbjct: 141 PAEDELSQRELDVLQLLVRGESNKAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVA 200

Query: 229 IRFGYI 234
           ++ G +
Sbjct: 201 LQRGLV 206


>gi|297195362|ref|ZP_06912760.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719268|gb|EDY63176.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +         +        LT+RE   L+L   G ++ EIA  L +S  TV  ++G
Sbjct: 135 RLLDKYADHLPSGEEPVPDTLHTLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A   G +
Sbjct: 195 HVLTKLGLRDRVQAAVYAYESGLV 218


>gi|187251602|ref|YP_001876084.1| two component LuxR family transcriptional regulator [Elusimicrobium
           minutum Pei191]
 gi|186971762|gb|ACC98747.1| Two-component transcriptional regulator, LuxR family
           [Elusimicrobium minutum Pei191]
          Length = 225

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 46/93 (49%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            +E ++       +++    ++    + +   LT  E   + L G G +++E+A +L  S
Sbjct: 125 TSEGLMIPQQLMGKLLHGLRKMGDNGTPSQALLTRTEIKVISLLGKGLSNKELATELSCS 184

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V T+  +L SA  KL   +R +A+ KAI  G I
Sbjct: 185 VKTIKNHLNSAFHKLGVGSRTEAVVKAIEKGLI 217


>gi|46201969|ref|ZP_00054016.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 209

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 6/149 (4%)

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP------VRLGFHKNGYVIFTSEF 138
            P     I  E        +   L   +     I +       V       G   F S+ 
Sbjct: 53  TPFDVGVIGWEMPYLDGRGVLQTLRSRVDAPRLIVYTGSPNPDVPRQAMTLGAAGFCSKR 112

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
                 +      A  +++  F+++    S     LT RE   L     G T++++A +L
Sbjct: 113 EPPEQLLDTIIAVAAGRMVFPFIDVSSLASDPLAGLTPRERELLAALAGGLTNQQMAGQL 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +S++TV  +L +   KL   NR QA+A 
Sbjct: 173 DISLNTVKFHLKNLYDKLGVGNRAQAVAF 201


>gi|329939099|ref|ZP_08288473.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329301984|gb|EGG45877.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 223

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +       
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|301052287|ref|YP_003790498.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300374456|gb|ADK03360.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|298243753|ref|ZP_06967560.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297556807|gb|EFH90671.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 35/75 (46%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           FL    +  +   NLTERE   L+L   G ++++IA  L +   TV  ++     KL   
Sbjct: 132 FLLHEVREPNLPENLTEREADVLRLLAQGRSNKDIARHLHIVEDTVKTHVRHILSKLGVQ 191

Query: 220 NRIQAIAKAIRFGYI 234
           +R QA   A R   +
Sbjct: 192 SRTQAALYATRLNLV 206


>gi|228907986|ref|ZP_04071836.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851652|gb|EEM96456.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|228918143|ref|ZP_04081650.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841505|gb|EEM86641.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|228950550|ref|ZP_04112691.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809127|gb|EEM55607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|228985616|ref|ZP_04145769.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774011|gb|EEM22424.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 73

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 9   ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 68

Query: 233 YI 234
            +
Sbjct: 69  LV 70


>gi|229073471|ref|ZP_04206602.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228709645|gb|EEL61688.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 131

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 67  ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 126

Query: 233 YI 234
            +
Sbjct: 127 LV 128


>gi|229079676|ref|ZP_04212209.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228703516|gb|EEL55969.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|229156108|ref|ZP_04284207.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627429|gb|EEK84157.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|206972973|ref|ZP_03233895.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134]
 gi|228924979|ref|ZP_04088109.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229182326|ref|ZP_04309600.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229194039|ref|ZP_04320933.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206731857|gb|EDZ49057.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134]
 gi|228589439|gb|EEK47364.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228601135|gb|EEK58682.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228834642|gb|EEM80151.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|196047172|ref|ZP_03114389.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108]
 gi|229182965|ref|ZP_04310198.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|196022042|gb|EDX60732.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108]
 gi|228600589|gb|EEK58176.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|196041819|ref|ZP_03109108.1| transcriptional regulatory protein DegU [Bacillus cereus
           NVH0597-99]
 gi|229028432|ref|ZP_04184554.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|196027313|gb|EDX65931.1| transcriptional regulatory protein DegU [Bacillus cereus
           NVH0597-99]
 gi|228732881|gb|EEL83741.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|47568085|ref|ZP_00238790.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|229042495|ref|ZP_04190240.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229108243|ref|ZP_04237865.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229194950|ref|ZP_04321731.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|47555239|gb|EAL13585.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|228588518|gb|EEK46555.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228675259|gb|EEL30481.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228726848|gb|EEL78060.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIAE L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|261408873|ref|YP_003245114.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329928799|ref|ZP_08282638.1| response regulator protein VraR [Paenibacillus sp. HGF5]
 gi|261285336|gb|ACX67307.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328937442|gb|EGG33863.1| response regulator protein VraR [Paenibacillus sp. HGF5]
          Length = 217

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L L  +G +++EI E+L +S+ TV  ++ +  +K +  +R Q    A R G
Sbjct: 154 GLTEREKEVLLLIAEGKSNKEIGEELHISIKTVKTHVSNLLMKCELEDRTQLAIYAHRKG 213

Query: 233 YI 234
           ++
Sbjct: 214 WV 215


>gi|224824369|ref|ZP_03697477.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224603788|gb|EEG09963.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 222

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 152 ACYQVITDFLELFKKRSSAA--------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
              + +T  L    +  + A          LT RE   L     G +++EIA  L L+  
Sbjct: 128 VMSEAMTAKLMAHFRAGAPAPSQQQQELEKLTPREREILGFLAQGQSNKEIARTLDLAES 187

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           TV  ++ +   KL   +R+QA   A+  G
Sbjct: 188 TVKIHVQNILKKLGLSSRVQAAVYAVEHG 216


>gi|32035561|ref|ZP_00135492.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207547|ref|YP_001052772.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae L20]
 gi|126096339|gb|ABN73167.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 209

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 11/134 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    +   V         ++                ++E      Q     
Sbjct: 69  LRALRKHGIDSRIVVLTVSDEQSDVFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVL 128

Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +   L   +  +     LT+RE   LQ    G ++++IA +L +S  TV  ++ +  
Sbjct: 129 SDSVRQHLLDRRPENDPLSVLTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLL 188

Query: 214 VKLDAVNRIQAIAK 227
            KL+  +R+ A   
Sbjct: 189 RKLNVHSRVAATVL 202


>gi|302550833|ref|ZP_07303175.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468451|gb|EFL31544.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 215

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 63/220 (28%), Gaps = 10/220 (4%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +       +   R+          LD            G
Sbjct: 3   VDDHPMWRDAVARDLAESGFEVVATAGDGEQAVRRAKAAVPEVLVLDLN--------LPG 54

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +      +       +   +       +             +         ++    
Sbjct: 55  KPGVQVCKEVVAADPALRVLVLSASGEHADVL--EAVKSGATGYLLKSASTEELRDAVRS 112

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                 +    +     G   ++ ++           A  LT+RET  L+L   G + ++
Sbjct: 113 TAVGDPVFTPGLAGLVLGEYRRLASEPAPAPDADEPKAPRLTDRETEVLRLVAKGLSYKQ 172

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 173 IAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|332204409|gb|EGJ18474.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 210

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY+I TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LDAGAKGYMIKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA+ L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|325067354|ref|ZP_08126027.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 244

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 5/135 (3%)

Query: 104 LSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
             +         AG +  +    R            S   +++  +           +  
Sbjct: 108 FDLDEYAFAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAASLPS 167

Query: 160 FLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                +        +LT RE   L L   G ++ EIA  L +S  TV  ++G+   KLD 
Sbjct: 168 SDAPEQSSCDPRIESLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDV 227

Query: 219 VNRIQAIAKAIRFGY 233
            +R+QA+  A   G 
Sbjct: 228 RDRVQAVVVAYETGL 242


>gi|156740169|ref|YP_001430298.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM
           13941]
 gi|156231497|gb|ABU56280.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii
           DSM 13941]
          Length = 454

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ERE   L+L   G T+++IA +L +S +TV  +L +   K+   +R +A   A+
Sbjct: 5   TLPQLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAV 64

Query: 230 RFGYI 234
           R G +
Sbjct: 65  RSGIV 69


>gi|295400540|ref|ZP_06810518.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977443|gb|EFG53043.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 557

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKR--- 167
                 I F V    H    V           EV +    G    ++        K+   
Sbjct: 422 FGTVMEIPFSVHEHMHGVMAVHMKHLEAAKEAEVYVTALIGIGTMIMKQNNYHGPKQQLN 481

Query: 168 -SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               +  LT RE   L L   G ++ EIA++L +S+HTV  ++ +   K+   +R Q IA
Sbjct: 482 MDMLSERLTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIA 541

Query: 227 KAIRF 231
              + 
Sbjct: 542 LVYQL 546


>gi|332358064|gb|EGJ35897.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 210

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|213692561|ref|YP_002323147.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524022|gb|ACJ52769.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458713|dbj|BAJ69334.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 289

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 224 PELDLLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 283

Query: 229 IRFGYI 234
              G +
Sbjct: 284 YDNGLV 289


>gi|72162890|ref|YP_290547.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916622|gb|AAZ56524.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 242

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 152 ACYQVITDFLELF----KKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
              ++I +F  L      +RS   +   LTERET  L+L   G  + +IA++L +S +TV
Sbjct: 139 MATKLINEFAALARKGKDRRSQPTKPPRLTERETEVLRLVARGLNNRDIADRLYISDNTV 198

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++ +   KL   +R +A   AIR  ++
Sbjct: 199 KNHVRNILEKLQLHSRTEAAVYAIREKFL 227


>gi|186682728|ref|YP_001865924.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465180|gb|ACC80981.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 221

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            S    LT RE   L+L   G ++ EIA++L +S  TV  ++ +    L+  +R QA   
Sbjct: 150 PSTLNELTPREKEVLRLIATGASNREIAQELYISEGTVKNHVTNILNTLNLRDRTQAAIW 209

Query: 228 A 228
           A
Sbjct: 210 A 210


>gi|83310354|ref|YP_420618.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945195|dbj|BAE50059.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 209

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 6/149 (4%)

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP------VRLGFHKNGYVIFTSEF 138
            P     I  E        +   L   +     I +       V       G   F S+ 
Sbjct: 53  TPFDVGIIGWEMPYLDGRGVLQTLRTRVDAPRLIVYTGSPNPDVPRQAMTLGAAGFCSKR 112

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
                 +      A  +++  F+++    S     LT RE   L     G T++++A +L
Sbjct: 113 EPPEQLLDTIIAVAAGRMVFPFIDVSSLASDPLAGLTPRERELLAALAGGLTNQQMAGQL 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +S++TV  +L +   KL   NR QA+A 
Sbjct: 173 DISLNTVKFHLKNLYDKLGVGNRAQAVAF 201


>gi|111023439|ref|YP_706411.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822969|gb|ABG98253.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 216

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---LELFKKRSSAARNLTERETSCLQL 184
                       ++A+   + A     ++I D        +++ +A   LT RE   L+L
Sbjct: 104 DAPAEELIRAVRVVADGEALLAPTVTRRLIADVTSRRSTARRKPAALSALTPREREVLEL 163

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++ EIAE+L ++  TV  ++G    KLD  +R QA+  A   G +
Sbjct: 164 IARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 213


>gi|318057517|ref|ZP_07976240.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318081139|ref|ZP_07988471.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 226

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 73/232 (31%), Gaps = 34/232 (14%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   ++A  F L           R+           D   +   L     
Sbjct: 13  VDDHPMWRDAVARDLEAAGFELVATAGDGPQAVRRATAT-----RPDVLVLDLNLPGL-- 65

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +      +                  +L V +       A +   V+ G        
Sbjct: 66  -PGVEVCKRLVR--------------ERPELHVLVLSASGEHADVLEAVKSGATGYLVKS 110

Query: 134 FTSEF--LMLANEVIIEAHG---ACYQVITDFLELFKKRSS-------AARNLTERETSC 181
            ++E     +    + +A         V+ ++  L  +           A  LTERET  
Sbjct: 111 ASTEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPEAPRLTERETEV 170

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 171 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 222


>gi|302205480|gb|ADL09822.1| Response regulator [Corynebacterium pseudotuberculosis C231]
 gi|308275716|gb|ADO25615.1| Response regulator [Corynebacterium pseudotuberculosis I19]
          Length = 234

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G ++ EIA +L +S+ TV  ++G    K  + +R+ A+  A + 
Sbjct: 164 EPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHAVLFAFKR 223

Query: 232 GYI 234
           G +
Sbjct: 224 GVV 226


>gi|323488502|ref|ZP_08093746.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2]
 gi|323397719|gb|EGA90521.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2]
          Length = 211

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 160 FLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            L + K+ ++     LT RE   L +  +G ++++IA +L +S  TV  ++ +   K D 
Sbjct: 133 LLSMHKQENNQEDKTLTPREMEVLLVLVEGLSNKDIATRLYISDKTVKIHVSNIFKKFDV 192

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QAI  A++   +
Sbjct: 193 KSRSQAIIFAVQNNLV 208


>gi|302561540|ref|ZP_07313882.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302479158|gb|EFL42251.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 223

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +       
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|149003489|ref|ZP_01828363.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|169833867|ref|YP_001693899.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|194398711|ref|YP_002037067.1| response regulator [Streptococcus pneumoniae G54]
 gi|225853962|ref|YP_002735474.1| response regulator [Streptococcus pneumoniae JJA]
 gi|237649348|ref|ZP_04523600.1| response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821532|ref|ZP_04597377.1| response regulator [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758425|gb|EDK65424.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|168996369|gb|ACA36981.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|194358378|gb|ACF56826.1| response regulator TCS03 [Streptococcus pneumoniae G54]
 gi|225723015|gb|ACO18868.1| response regulator [Streptococcus pneumoniae JJA]
          Length = 210

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA+ L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|89098909|ref|ZP_01171789.1| germination protein [Bacillus sp. NRRL B-14911]
 gi|89086313|gb|EAR65434.1| germination protein [Bacillus sp. NRRL B-14911]
          Length = 74

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|291486493|dbj|BAI87568.1| hypothetical protein BSNT_05953 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 218

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAE 196
              A    I       ++I++     ++  +   A   T+RE   LQ    G  +E+IAE
Sbjct: 120 RAAARGEAIFRTVTAAKIISETFRAKQQPHAEELAEPFTKRELEVLQQMAYGLRNEDIAE 179

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KL +S  TV  ++     K +A +R QA+  AIR G +
Sbjct: 180 KLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|269837395|ref|YP_003319623.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786658|gb|ACZ38801.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 249

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLS 201
             E                 +   A+      L+ RE   L     G +++EIAE L ++
Sbjct: 141 RPELAWRVLSEFRQLTGDDGEAGPASDPKRLPLSVREVEVLDCVAQGLSNKEIAEALFIT 200

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  ++ S   KL   +R+QA+  A+R G++
Sbjct: 201 EQTVKNHMTSVLRKLQVNDRVQAVLCAVRNGWV 233


>gi|296453955|ref|YP_003661098.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183386|gb|ADH00268.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 286

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 221 PELDLLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 280

Query: 229 IRFGYI 234
              G +
Sbjct: 281 YDNGLV 286


>gi|238060304|ref|ZP_04605013.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|330469356|ref|YP_004407099.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|237882115|gb|EEP70943.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|328812327|gb|AEB46499.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 222

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184
              + +V  T+    +       A         D  E  K+R + +   L+ RE   L+L
Sbjct: 105 AGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRL 164

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG +   IA++L +S  T   ++     KL A NR QA+  A+R G +
Sbjct: 165 LADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214


>gi|220907344|ref|YP_002482655.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863955|gb|ACL44294.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 209

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
             L ++ SS    LTERE   L L  +G +++EIA  L +S  T+  ++     KLD  +
Sbjct: 136 ARLAERMSSP--QLTERERQVLMLMCEGKSNQEIALTLQISEGTIKFHVNGILRKLDVCD 193

Query: 221 RIQAIAKAIRFGY 233
           R QA+  A++ G 
Sbjct: 194 RTQAVLVALKRGM 206


>gi|302344447|ref|YP_003808976.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301641060|gb|ADK86382.1| transcriptional regulator, LuxR family [Desulfarculus baarsii DSM
           2075]
          Length = 221

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 4/147 (2%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVI 146
            +  E    +         GG    A  A+P+     +  YV+       +  +    + 
Sbjct: 74  RVVFEQGRRNVSDKWSMAHGGRRCNAVYAYPIFDEAGRVEYVLKIGFDVTDDRVSRRRLE 133

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
               G    +            +    L+ RE   L+L   G T+ EIA  L +S HTV 
Sbjct: 134 RYVEGLERSLRGRPALAAPPAEAEESGLSGREMEVLRLVASGMTNNEIARALCISPHTVK 193

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++G+   KL   +R  A   A R G 
Sbjct: 194 THVGNIFNKLGVNDRAMAAVTAARMGL 220


>gi|295696562|ref|YP_003589800.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295412164|gb|ADG06656.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 220

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +++ + L            LT RE   L     G ++ EIA++L +S HTV  ++ 
Sbjct: 129 LLAARIVAE-LHKEATPEDVLEPLTSRELEVLGYLSTGASNREIAKQLFISEHTVRNHIQ 187

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   NR+QA A AIR G 
Sbjct: 188 NILGKLHLTNRVQAAAYAIRQGI 210


>gi|262201875|ref|YP_003273083.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262085222|gb|ACY21190.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 218

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 14/170 (8%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +      +  ++              +L   + G     A +     L        +   
Sbjct: 51  VQRCRPDV--VVVDLKLTAGTEYEGLRLITEISGRHPGVATLVLTTFLDDDLVVRAVRAG 108

Query: 137 EFLMLANE-VIIEAHGACYQVITDFLELFKKRSS-----------AARNLTERETSCLQL 184
               +  +    E   A   V         + ++               LT+RE   L+L
Sbjct: 109 ARGYVVKDVDTTELVRAIQAVFGGGSAFDPRSAAIVLRSVSGDVDKPEALTDREREVLRL 168

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG +++ I + L +S  TV  ++ +   KL    R  A+  A + G I
Sbjct: 169 LADGLSNKRIGQTLFISESTVKFHIRNIIRKLGVSKRTDAVYIASKRGLI 218


>gi|239929757|ref|ZP_04686710.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 224

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q +  A   
Sbjct: 155 ERLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|297202869|ref|ZP_06920266.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197715208|gb|EDY59242.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 230

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 42/110 (38%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               +  V      L     +         + ++D        + A   LT RE   L L
Sbjct: 113 DAGGDEIVRAVQSVLSGDAGLSPSIQRRLLERLSDPEPPQPAPAEAPDGLTAREVEVLAL 172

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G T++EIA +L +S  TV  ++ +   K    +R QA+  A   G +
Sbjct: 173 IAEGLTNQEIARELHVSTATVKTHINNLFAKTGIKDRAQAVRYAYAKGLV 222


>gi|145595794|ref|YP_001160091.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305131|gb|ABP55713.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 221

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184
              + +V  T+    +       A         D  E  K+R + +   L+ RE   L+L
Sbjct: 104 AGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRL 163

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG +   IA++L +S  T   ++     KL A NR QA+  A+R G +
Sbjct: 164 LADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213


>gi|167572464|ref|ZP_02365338.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 347

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 67/222 (30%), Gaps = 14/222 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +    FA + I  + D      L                       D  +    + 
Sbjct: 129 LLRLMGFATFAYFAIEFSRDDAECLYLHEAFT--PAAYRGDYVRRRHHDVDPRMLGTRAS 186

Query: 84  LLPIIWQ----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEF 138
            +P++W     +    +    +    +R+       +G+ + + +   +      +T+  
Sbjct: 187 SMPVVWDLRQLARDHASRGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRMHAFASYTAPR 246

Query: 139 LMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                      E ++   G           +   R  AA  LT  E   L    +G + +
Sbjct: 247 RSRDWISSATLEQVLSL-GLSVHRFAAPQLIASSRERAAERLTPFERELLVGIAEGASDK 305

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI  +L  S H V+ +L     +    NRIQ    A   G I
Sbjct: 306 EIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 347


>gi|302869001|ref|YP_003837638.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315504528|ref|YP_004083415.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302571860|gb|ADL48062.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315411147|gb|ADU09264.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 222

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184
              + +V  T+    +       A         D  E  K+R + +   L+ RE   L+L
Sbjct: 105 AGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRL 164

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG +   IA++L +S  T   ++     KL A NR QA+  A+R G +
Sbjct: 165 LADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214


>gi|229821303|ref|YP_002882829.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567216|gb|ACQ81067.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 231

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 157 ITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
               +   ++++   A   LTERE   L L   G T+ EI   L ++  TV  ++G    
Sbjct: 148 HLAAVLPDEQKTPTTALDALTEREREVLVLIARGRTNTEIGADLFVAEATVKTHVGRILA 207

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A +R+QA+  A   G +
Sbjct: 208 KLGARDRVQAVVIAYETGLV 227


>gi|308272248|emb|CBX28854.1| hypothetical protein N47_B20000 [uncultured Desulfobacterium sp.]
          Length = 225

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              +V+   +E   K++ A       LT RE   L+L  +G   + I EKL +S  TV  
Sbjct: 132 LSCEVVNRLMETPTKKTKAKDLAYGALTPREQEVLRLLAEGMAPKAIGEKLFISPKTVEN 191

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   KLD  + +  +  A + G I
Sbjct: 192 HRANIMSKLDLHSILDLVRYAAKVGLI 218


>gi|126665815|ref|ZP_01736796.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Marinobacter sp. ELB17]
 gi|126629749|gb|EBA00366.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Marinobacter sp. ELB17]
          Length = 219

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGAC---- 153
           +   +L    +    I F V          +           M   ++I + H A     
Sbjct: 68  EALRQLRAHNISSRIIMFTVSDQQDDVVEALRAGADGYLLKDMEPEDMIKQLHQAAVGKL 127

Query: 154 ------YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                   ++ D L   K +  A     +LT RE   L L  +G +++ I  KL +S  T
Sbjct: 128 VISERLTSLLADALRNNKSQQPARPDFDSLTPREKDILNLIAEGLSNKMIGRKLDISDGT 187

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V  ++     KL+  +R++    A+  G 
Sbjct: 188 VKVHVKHLLKKLNLRSRVEVAVWAVEEGL 216


>gi|21230586|ref|NP_636503.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769421|ref|YP_244183.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992608|ref|YP_001904618.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112164|gb|AAM40427.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574753|gb|AAY50163.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734368|emb|CAP52578.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 213

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|46199289|ref|YP_004956.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981321|ref|YP_144618.1| response regulator [Thermus thermophilus HB8]
 gi|46196914|gb|AAS81329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55772734|dbj|BAD71175.1| response regulator [Thermus thermophilus HB8]
          Length = 215

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + A EV+++A      +I DF    +        L+ERE   L+L   GYT++EIA +
Sbjct: 116 RRVHAGEVLLDAE-LAGHIIQDFRAKKEASQPLHAELSEREVQILRLVAQGYTNQEIAAE 174

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L LS  TV   L     KL   NR QA   AIR G 
Sbjct: 175 LQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210


>gi|296877022|ref|ZP_06901064.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|296431966|gb|EFH17771.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
          Length = 210

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A R
Sbjct: 142 HDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFR 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|146295566|ref|YP_001179337.1| two component LuxR family transcriptional regulator
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409142|gb|ABP66146.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 211

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLT 175
            L F  +GY++ +S+   + N ++    G           V        K+     +NL+
Sbjct: 94  SLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYVSDVLKRTSKQLFEKTQNLS 153

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ERE    +L   GY+++EIA  L +S  TV  Y+ S   KL+  NR Q    
Sbjct: 154 ERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|56964906|ref|YP_176637.1| two-component response regulator of extracellular proteinase
           [Bacillus clausii KSM-K16]
 gi|56911149|dbj|BAD65676.1| two-component response regulator of extracellular proteinase
           [Bacillus clausii KSM-K16]
          Length = 219

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V+T         +     LT+RE   L+    G +++EIA  L +S  TV  ++ 
Sbjct: 127 RIMKHVLTHVARSANSVADKVNRLTDREVDVLKEISTGKSNKEIAAALFISEKTVKTHVS 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL+  +R QA   AI+ G 
Sbjct: 187 NLLGKLELQDRTQAALFAIQAGI 209


>gi|255535518|ref|YP_003095889.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
 gi|255341714|gb|ACU07827.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
          Length = 218

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           ++ +   S    LT RE   L    +G  + EIA++L +S HTV ++  +   KLD  + 
Sbjct: 145 QIEEHDPSRLEELTVREKEVLHHICEGLRTREIADELFISPHTVESHRRNIMQKLDVRSS 204

Query: 222 IQAIAKAIRFGYI 234
              +  A+    +
Sbjct: 205 SMLVKFAMNNNLV 217


>gi|54026224|ref|YP_120466.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017732|dbj|BAD59102.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 220

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---LELFKKRSSAARNLTERETSCLQL 184
                       ++A    + A     ++I +        +K +     LT RE   L+L
Sbjct: 108 DAPAEELVRAVRVVAEGQALLAPTVTRRLIAEVTSRRAASRKPAPELAALTPREREVLEL 167

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++ EIAE L ++  TV  ++     KL+  +R QA+  A   G +
Sbjct: 168 VARGMSNTEIAEALFVAEQTVKTHVSKVFSKLNLRDRAQAVVLAYESGLV 217


>gi|307704250|ref|ZP_07641169.1| response regulator [Streptococcus mitis SK597]
 gi|307622161|gb|EFO01179.1| response regulator [Streptococcus mitis SK597]
          Length = 210

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L + V   A    A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGARGYMLKTSRADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|297161877|gb|ADI11589.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 223

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +         +        LTERE   L+L   G ++ EIA  L +S  TV  ++G
Sbjct: 135 RLLDKYAGHLPSGEEPVPDTLHTLTEREVEVLKLVAKGLSNAEIAADLFVSETTVKTHVG 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A   G +
Sbjct: 195 HVLTKLGLRDRVQAAVYAYESGLV 218


>gi|302535348|ref|ZP_07287690.1| two-component system regulator [Streptomyces sp. C]
 gi|302444243|gb|EFL16059.1| two-component system regulator [Streptomyces sp. C]
          Length = 223

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS---AARN 173
           L    +G+++  +    LA  V + A G          ++IT+F  L   R+        
Sbjct: 98  LRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRLGAPRAPSRARIEE 157

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERET  L L   G ++ EIA  L ++  TV  ++G   VKL   +R QA   A   G 
Sbjct: 158 LTERETEVLSLIAQGLSNGEIATHLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGL 217

Query: 234 I 234
           +
Sbjct: 218 V 218


>gi|302531265|ref|ZP_07283607.1| response regulator [Streptomyces sp. AA4]
 gi|302440160|gb|EFL11976.1| response regulator [Streptomyces sp. AA4]
          Length = 218

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +  +    LT+RE   L L   G ++ EIAE L LS  TV  ++G    KLD  +R+QA+
Sbjct: 145 RDPAELDVLTDREREVLVLIAKGMSNVEIAETLFLSEATVKTHVGRILSKLDLRDRVQAV 204

Query: 226 AKAIRFGY 233
             A   G 
Sbjct: 205 VLAYETGL 212


>gi|152967753|ref|YP_001363537.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362270|gb|ABS05273.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 236

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 157 ITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                   ++R+     A  L+ RE   L+L   G  + EIA  LG+S +TV  ++ +  
Sbjct: 153 FNAMRRRDEERNLGLPGAPRLSPRELDVLRLLARGMANREIAGSLGISENTVKNHVRNIL 212

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL   +R++A+  A+R   +
Sbjct: 213 EKLQLHSRMEAVVYAVREKIV 233


>gi|302534277|ref|ZP_07286619.1| erythropoiesis-stimulating protein [Streptomyces sp. C]
 gi|302443172|gb|EFL14988.1| erythropoiesis-stimulating protein [Streptomyces sp. C]
          Length = 328

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 77/227 (33%), Gaps = 14/227 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L  +  RL ++   +         ++      + Q  +      D D+      
Sbjct: 116 AERLVGLDAIQSRLEVLARDLTVE-----CLSIMPGGAQSQASLDASRPLDEDALRRGIQ 170

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +   Y D       +    + +     +   ++     +     +        P+     
Sbjct: 171 IRTIYQDSV----RNDPATLAYVQWATDLGAQNRTSPVLPPRLVIFDRKTAVVPIDPANS 226

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           K G +  T+  ++ +   + E        +        +  +    +T  E   L+L   
Sbjct: 227 KLGALCTTAPGIVASLVSLFEQTWDQAVPLGAA-----REQATEDGITAGERELLKLLAS 281

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T E   ++LG+S+ TV   + +   +L+A +R +A  +A + G++
Sbjct: 282 GLTDEAAGKRLGVSLRTVRRQMSALMERLNATSRFEAGLRAAQRGWL 328


>gi|229916670|ref|YP_002885316.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
 gi|229468099|gb|ACQ69871.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
              + L+ RE   L L  DG ++ +I++ L +S  TV  ++ S   K+D  +R QA+  A
Sbjct: 163 PVYQLLSRREVEVLHLLADGRSNRDISDMLFISEKTVKNHVSSVLRKMDVNDRTQAVVDA 222

Query: 229 IRFGYI 234
           IR G++
Sbjct: 223 IRRGWV 228


>gi|294813229|ref|ZP_06771872.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441661|ref|ZP_08216395.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325828|gb|EFG07471.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + R+     LTERE   + L   G ++ EIA +L LS  TV  ++G    KL+  +R+Q 
Sbjct: 148 EPRNKEVDRLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLNLRDRVQV 207

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 208 VVLAYETGLV 217


>gi|297201415|ref|ZP_06918812.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713823|gb|EDY57857.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q +  A   
Sbjct: 155 ERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|152968160|ref|YP_001363944.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362677|gb|ABS05680.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 41/106 (38%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                      +LA  V     G   + I +         +    LT RE   L L   G
Sbjct: 118 AAVRTVAGGEQLLAPAVTRRLVGRFAERIREVAPGRGGAGAELAGLTPREVEVLGLIARG 177

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIA +L +S  TV  Y+     KL   +R+QA+  A R G +
Sbjct: 178 LSNAEIAAELVISHETVKTYVSRILAKLGLRDRVQAVVLAYRTGLV 223


>gi|329939465|ref|ZP_08288801.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301694|gb|EGG45588.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 223

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++  +            +          R      LTERE   + L   G ++ 
Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPMLPDTNQR---PRHEGLERLTEREREVMVLVAQGLSNG 175

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L LS  TV  ++G    KL   +R+Q +  A   G +
Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|37523973|ref|NP_927350.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214979|dbj|BAC92345.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           +  E    +   A  LTERE   LQL  +G ++++IA++L ++V TV  ++ +   KL A
Sbjct: 153 NAAEPEFTQILEASPLTERELEVLQLIVEGRSNQDIADQLYITVGTVKTHVRNILSKLCA 212

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QA   A+R G +
Sbjct: 213 DDRTQAAVTALRAGLV 228


>gi|307324713|ref|ZP_07603919.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889595|gb|EFN20575.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 58/197 (29%), Gaps = 3/197 (1%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           I+   + P  +Q +        D   +   + E  G +           +I +       
Sbjct: 28  IDVVGEAPDGRQGVEVSRRAHPDVVLMDVRMPEMDGLEAARQLLDPPRGVIHRPKVLMLT 87

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                             +G              V   +    L    +           
Sbjct: 88  TFDVDDYVYEALRAG--ASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR-RLIADFAR 144

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                     S+    LT RET  L+L   G +++EIAE L L+  TV  ++G    KL 
Sbjct: 145 QRPAPRRDGPSARRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTHIGRVLAKLG 204

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R QA+  A   G +
Sbjct: 205 LRDRAQAVIFAYESGLV 221


>gi|302562273|ref|ZP_07314615.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302479891|gb|EFL42984.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 35/77 (45%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
               +   +  +     LT RE   L+L  DG ++ EIA  L +S  TV  ++     KL
Sbjct: 142 YAARIRPVEDGAPRDLPLTPRELEVLRLIADGLSNSEIAAALLISQETVKTFVSRILAKL 201

Query: 217 DAVNRIQAIAKAIRFGY 233
              +R+QA+  A R G 
Sbjct: 202 GLRDRVQAVVYAYRRGL 218


>gi|218658162|ref|ZP_03514092.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 144

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
           +    +G  +   +    E  +L+ E + +       V   FL     R      LT+RE
Sbjct: 30  SLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGARVDRDFELTDRE 88

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             CL    +G TS+EIA  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 89  LECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 144


>gi|34497990|ref|NP_902205.1| nitrate/nitrite response regulator protein narL [Chromobacterium
           violaceum ATCC 12472]
 gi|34103845|gb|AAQ60206.1| nitrate/nitrite response regulator protein narL [Chromobacterium
           violaceum ATCC 12472]
          Length = 215

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +  S    +  + ++        +    L     ++S A  LT RE   L     G ++
Sbjct: 113 FLLDSIRRAVDGDSVLSPEMTAKLLAR--LRQPAAKASEADALTPRERETLGWLARGASN 170

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +EIA  L L+  TV  ++ +   KL   +R+QA   A+  G 
Sbjct: 171 KEIARALDLAESTVKVHVQNILRKLSLSSRVQAAVYAVEHGL 212


>gi|269955414|ref|YP_003325203.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304095|gb|ACZ29645.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 212

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   +   A G      T    L     ++A  LT RE   L L 
Sbjct: 103 AGATGYLLKDTPRDALVRGIRAAAQGQTVLAPTVATRLVGSVRASADRLTPREAQVLALV 162

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G ++ E+  +L ++  TV  +L  A  KL   +R  A+ +A R G++
Sbjct: 163 AEGCSNAEVGRRLFIAEATVKTHLLRAFAKLGVDDRTAAVTEARRRGWL 211


>gi|170688263|ref|ZP_02879473.1| germination protein GerE [Bacillus anthracis str. A0465]
 gi|254687022|ref|ZP_05150880.1| germination protein GerE [Bacillus anthracis str. CNEVA-9066]
 gi|170667769|gb|EDT18522.1| germination protein GerE [Bacillus anthracis str. A0465]
          Length = 74

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|163761091|ref|ZP_02168168.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162281642|gb|EDQ31936.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 260

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 15/221 (6%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              L  +       +FAL  +  +L      + I +LH+      ++ ++      +  L
Sbjct: 50  YRLLKDLAQEYSFDDFALLRLPQSL-KSANFRSIFDLHSLSEIELEMLDLEGGCSAEPVL 108

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKNGYVIFTS 136
            H     +P   +    + +  + G     L         +AF +  L   +     F  
Sbjct: 109 EHLMHWAVPYELRLTSNDAIDLAKG-----LLRHYGINVCVAFNLPSLTLTRYAIAFFAR 163

Query: 137 EFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           +          ++++A     ++    L         +     R+ + L L  +G TS++
Sbjct: 164 KDTPENRNTGALMLDALACFDRLNMHLLNADN-----SDEFDARDAAILSLTSEGLTSQQ 218

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA +L +S HTVNA + S   +L  +NR Q IA AIR G I
Sbjct: 219 IAVELKISEHTVNANVASMIRRLGVLNRPQLIATAIRKGLI 259


>gi|89055833|ref|YP_511284.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865382|gb|ABD56259.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 251

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 64/241 (26%), Gaps = 15/241 (6%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           ++E       +    E +  L      +         IN A                  D
Sbjct: 11  ITELAAHLLAADGFDERAVILDRALGALGGD-----WINIAEGSGDTMIPHWFYSTLPAD 65

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIA 119
           +            D            +IW          +    +     G     A + 
Sbjct: 66  TLTAYASDAHWRRDTIYRTAMQSTPQVIWSQTGPRPGSGAGEDATFDTFIGDAGTKAIVT 125

Query: 120 FPV-RLGFHKNGYVIFTSE------FLMLANEVIIEAHGACYQVITDFLELFKKR--SSA 170
           + +          +   S       F       I +        +         R     
Sbjct: 126 YTLQSTPVGDTRAISLISSLPTKEVFQPANLRDIADTIRLMLPWMDASATRETGRLVPYP 185

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            R L++RE   + L   G  +  I++ +G++  TV+ ++ +A  KL A  R   +A AIR
Sbjct: 186 VRQLSQREREAVTLLAGGLQTARISDAMGVAEVTVHKHIRNARHKLGARTREHLVAAAIR 245

Query: 231 F 231
            
Sbjct: 246 R 246


>gi|328881828|emb|CCA55067.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 223

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 36/233 (15%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +       +   R+ L        LD             
Sbjct: 11  VDDHPMWRDAVARDLAEAGFDVVATAGDGEQAVRRALAVTPDVLVLDLN--------LPV 62

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++    +L V +       A +   V+ G      + 
Sbjct: 63  KPGVQVCKE--------------LVGGRPELRVLVLSASGEHADVLEAVKSGATGY-LLK 107

Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAA-------RNLTERETS 180
             S   ++               G    V+ ++  L  + + AA         LTERET 
Sbjct: 108 SASTEELIDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAPAAGADEPKAPQLTERETE 167

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 168 VLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 220


>gi|182439643|ref|YP_001827362.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780308|ref|ZP_08239573.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468159|dbj|BAG22679.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660641|gb|EGE45487.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 223

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L                 A  
Sbjct: 97  LRAGASGFLLKDAPAAELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEDPVPDALH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|254250258|ref|ZP_04943578.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124876759|gb|EAY66749.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 251

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 63/228 (27%), Gaps = 20/228 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYG 73
            +    LH   +   A  FA  +        +  +    EL                   
Sbjct: 22  ADWQRALHACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRLL 78

Query: 74  DDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVRL---------EGGLLPFAGIA 119
           D        +G   ++     + +E    S+   +   R                  G  
Sbjct: 79  DPLHPSRCAAGDRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDAGRTVGAF 138

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTER 177
             +R G            F     + +          ++  L   +   R      LT R
Sbjct: 139 SLLRFGMGDANGNGTAGRFAPGEIDALARLQPVAEAALSPLLRARRGIHRIGCEERLTYR 198

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           E    +L  DGY+++EIA  L L   T+  +L     KL   NR + +
Sbjct: 199 EEQIARLVRDGYSNKEIARDLALGPPTIKTHLMRMYRKLGVSNRTELV 246


>gi|120555604|ref|YP_959955.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
 gi|120325453|gb|ABM19768.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
          Length = 891

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +       A  +++RE   L+L   G +++EIA+KL +S+HTV  +      KLD  +R 
Sbjct: 820 VAPAADPLAEPISDREQGVLELIAQGLSNQEIADKLHISLHTVKTHARRINAKLDVKSRT 879

Query: 223 QAIAKAIRFGYI 234
           QAI +A   G +
Sbjct: 880 QAIVRARELGLL 891


>gi|282861875|ref|ZP_06270938.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562900|gb|EFB68439.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 214

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178
           +R G     Y     + L  A   +   H      +   L   +     +     LTERE
Sbjct: 98  LRAGACGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDAGGGTGRGSTLTERE 157

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211


>gi|297194849|ref|ZP_06912247.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152490|gb|EDY64595.2| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 224

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           G    V+ ++  L  +    A         LT+RET  L+L   G + ++IAE+L +S  
Sbjct: 132 GLAGLVLGEYRRLASEPGPPAGADEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHR 191

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 192 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 221


>gi|163753720|ref|ZP_02160843.1| Regulatory protein [Kordia algicida OT-1]
 gi|161325934|gb|EDP97260.1| Regulatory protein [Kordia algicida OT-1]
          Length = 146

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L  +G++++EIA  L +S  T+  ++ +   KLD   R QAI KA +  
Sbjct: 83  GLSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKAKQLQ 142

Query: 233 YI 234
            +
Sbjct: 143 IL 144


>gi|91783993|ref|YP_559199.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91687947|gb|ABE31147.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 213

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             ++++       ++ +    +LTERE   L+   +G ++  I + L +S  TV  ++G+
Sbjct: 130 VAHRILRSVRTARERVTDPFASLTEREMDVLRALAEGSSNGRIGKMLNISESTVKTHIGN 189

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLD  +R QA+A A R G I
Sbjct: 190 VLAKLDLRDRTQAVAFAWRHGLI 212


>gi|300783016|ref|YP_003763307.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792530|gb|ADJ42905.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G     +   +L  EV     G     I          ++    LT RE   L+L  +G 
Sbjct: 119 GIRTVATGAALLDPEVTRRLVGRHAARIRPV-----PGAAPEVPLTPRELEVLRLLAEGL 173

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ EIAE+L +S  TV  ++     KLD  +R+QA+  A R G 
Sbjct: 174 SNSEIAERLVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL 217


>gi|19553213|ref|NP_601215.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390849|ref|YP_226251.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21324779|dbj|BAB99402.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326187|emb|CAF20350.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium glutamicum ATCC
           13032]
          Length = 210

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  S    L   V   A G          ++  + ++    L+ RE   L L
Sbjct: 101 SAGAVGYLLKDSSPEDLIAGVRDAARGESVLSKQVASKIMGRMNNPMTALSAREIEVLSL 160

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++ EI +KL L+  TV +++G    KLD  +R  A+A+A + G I
Sbjct: 161 VAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGII 210


>gi|225872928|ref|YP_002754385.1| DNA-binding response regulator, LuxR family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794168|gb|ACO34258.1| DNA-binding response regulator, LuxR family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 213

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 8/148 (5%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
                   E   E+   +    +G       I+  VR      GY++   +   LA +V 
Sbjct: 72  FDVARAILEFDPEARILVFSSAQGDASIHTAISLGVR------GYLLKGIDGAALAEQVR 125

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             A G          +L +  +  ++ L+ERE   L L   G +++EIA  L ++ +TV 
Sbjct: 126 HVARGGSCLSPEAAEKLTQYIT--SKKLSERELEVLSLISKGKSNKEIAGLLFVTDNTVK 183

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++     KL A +R QA+  AI+ G +
Sbjct: 184 MHVKKILSKLQANDRTQAVVIAIQRGLL 211


>gi|254228707|ref|ZP_04922130.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262396571|ref|YP_003288424.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
 gi|151938654|gb|EDN57489.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262340165|gb|ACY53959.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
          Length = 210

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 150 HGACYQVITDFL------ELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +    +++   +      E       A    LT RE   L++  +G ++ EIA+ L +S 
Sbjct: 121 NWLSRRLLDQLVNYYRGKEANSIIEPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISE 180

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           HT+ ++L +   KL+  NR QA + A R 
Sbjct: 181 HTIKSHLYNIFRKLEVKNRTQATSWARRN 209


>gi|194364877|ref|YP_002027487.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347681|gb|ACF50804.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 213

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNDFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|312623477|ref|YP_004025090.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203944|gb|ADQ47271.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 211

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLT 175
            L F  +GY++ +S+   + N ++    G           +        K+     +NLT
Sbjct: 94  SLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYISDVLKRTSKQYFEKTQNLT 153

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ERE    +L   GY+++EIA  L +S  TV  Y+ S   KL+  NR Q    
Sbjct: 154 ERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|239978584|ref|ZP_04701108.1| two-component response regulator [Streptomyces albus J1074]
 gi|291450480|ref|ZP_06589870.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353429|gb|EFE80331.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +         +        LT+RE   L+L   G ++ EIA  L +S  TV  ++G
Sbjct: 135 RLLDKYAEHLPSGDEPVPDTLHTLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A   G +
Sbjct: 195 HVLNKLGLRDRVQAAVYAYESGLV 218


>gi|159897633|ref|YP_001543880.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890672|gb|ABX03752.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 218

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 37/95 (38%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +      EA            EL   R S    LTERE   L     G ++ EIAE L 
Sbjct: 117 AIRAARRGEATLHPMVASRLMTELTSSRRSPLDTLTEREREVLTCIARGMSNAEIAEHLV 176

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +   TV  ++ +   KL   +R QA   A+R   +
Sbjct: 177 IGERTVKTHVSNILSKLHLQDRTQAAIMALRERLV 211


>gi|299822491|ref|ZP_07054377.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299816020|gb|EFI83258.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 212

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   L L  +G  ++EIA++L +++ TV  ++ +   KLD  +R QA   A +
Sbjct: 146 HDELTNRENEILLLIAEGKANQEIADELYITLKTVKTHVSNILSKLDVQDRTQAAIYAFQ 205

Query: 231 FGYI 234
              +
Sbjct: 206 HDLV 209


>gi|297198721|ref|ZP_06916118.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197715398|gb|EDY59432.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 213

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178
           +R G     Y     + L  A   +   H     +V    L   +  S   R  +LTERE
Sbjct: 97  LRAGAAGYVYKDIDPDALAGAIRSVHAGHILLQPEVAGVLLSQEENNSGQGRGGSLTERE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211


>gi|84495164|ref|ZP_00994283.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384657|gb|EAQ00537.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 219

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K S   R LT RE   L+L   G ++ EIA +L ++  TV  ++     KL   +R QA
Sbjct: 147 PKDSPRLRELTPRELEVLELIARGLSNVEIATRLFVAEQTVKTHVSRVLAKLGLRDRAQA 206

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 207 VVFAYEHGVV 216


>gi|226303587|ref|YP_002763545.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226182702|dbj|BAH30806.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 205

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +  + L + V   A G          +L  +      +L+ RE   L+L 
Sbjct: 97  AGASGYLLKDTPPVELLSAVRAAASGDSVLSPAIASKLMTRVRKPETSLSPREIEVLKLV 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G ++ EI ++L LS  TV ++L     KL   +R  A+A+A   G
Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARARELG 203


>gi|209549305|ref|YP_002281222.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535061|gb|ACI54996.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 251

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 72/242 (29%), Gaps = 13/242 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + E     +    +  LS  +H ++  + A N A   +         +        Y   
Sbjct: 8   LPEAFHCIRNLHEIGHLSAIVHQLRALVGAANLAYQALFIPGRMANER---LVAETYSDR 64

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
              +         D           P+ W  +   +  + +       E   +   GI+ 
Sbjct: 65  WKKLYQSKNYLRTDPIEIAARKTSQPLDWGHL--RSASKETASFFAEAERHGVGNNGISI 122

Query: 121 PVRLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSS---AAR 172
           P+            TS              +         +     E+  K ++      
Sbjct: 123 PLVDAQAGRALFSVTSNLEGEDWATFKGRALPSLIQIGKAIQLRTAEIETKPAAQPSRVA 182

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT +ET  L L   GY  ++I +   +S   V A L SAT KLDA     A   A+  G
Sbjct: 183 ALTTKETDYLALYVAGYAIKQIGDMRSVSGTAVRAALNSATEKLDARGPRHAGYLAVALG 242

Query: 233 YI 234
            I
Sbjct: 243 II 244


>gi|83588897|ref|YP_428906.1| two component LuxR family transcriptional regulator [Moorella
           thermoacetica ATCC 39073]
 gi|83571811|gb|ABC18363.1| two component transcriptional regulator, LuxR family [Moorella
           thermoacetica ATCC 39073]
          Length = 221

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               + + + L   +        LTERE   L+LA +G T+ EIA +L +SV TV A+  
Sbjct: 133 RRVIEGLQERLPFTRASRPEGPELTERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRA 192

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R+  +  AI+ G +
Sbjct: 193 NIMQKLGLHDRVDLVKYAIKNGIL 216


>gi|21220292|ref|NP_626071.1| two component response regulator [Streptomyces coelicolor A3(2)]
 gi|5123537|emb|CAB45293.1| putative two component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 210

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSA--ARNLTERE 178
           +R G     Y     + L  A   +   H     +V    L   +  S    A +LTERE
Sbjct: 94  LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESSSGPGRAGSLTERE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 154 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 207


>gi|294631853|ref|ZP_06710413.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|292835186|gb|EFF93535.1| two-component system, regulatory protein [Streptomyces sp. e14]
          Length = 229

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------- 171
            FP  L     GY+   +    +   V     G      +    L +  S          
Sbjct: 98  LFPA-LRAGARGYLTKDAGGDEIVRAVESVLSGEAGLAPSIQRRLLEHLSEPEPEPWATP 156

Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                  LT RE   + L  +G +++EIA +L +S  TV  ++ +   K    +R QA+ 
Sbjct: 157 ADQAPDGLTARECEVVVLIAEGLSNQEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVR 216

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 217 YAYAKGLV 224


>gi|271963471|ref|YP_003337667.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506646|gb|ACZ84924.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 205

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + +   A G           L  +  S   +L+ RE   + L 
Sbjct: 95  AGAAGYLLKDAPTDDLLDAIRAVARGETILAPPVAARLVTRMRSPRASLSPREVEIVLLV 154

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++ +IA +L +S  TV ++L     KL+  NR  A+  A R G +
Sbjct: 155 ADGLSNRQIARELFISEATVKSHLVHIYAKLEVDNRTGAVKVARRRGLL 203


>gi|171915509|ref|ZP_02930979.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 209

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 7/149 (4%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-------EFLMLANEV 145
             +   +   +++ +L         +   V  G       +             +     
Sbjct: 57  DFKMPGQDGAEITKQLRLEFPDARVVLLTVFEGEEDIWRAVQAGASGYVSKSAEVEELLE 116

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           ++    A  Q  +  +        A   LT RE   L+    GY+++EIA KL +S  TV
Sbjct: 117 VVRRIFAGEQYFSPNVAAKLAARQARNALTPRELQVLRHIVAGYSNKEIAAKLHMSEATV 176

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++ +   KL+  +R QA  +A++ G +
Sbjct: 177 KLHISNTLDKLNVADRTQAAIEAVKRGIV 205


>gi|145295913|ref|YP_001138734.1| hypothetical protein cgR_1838 [Corynebacterium glutamicum R]
 gi|140845833|dbj|BAF54832.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 210

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  S    L   V   A G          ++  + ++    L+ RE   + L
Sbjct: 101 SAGAVGYLLKDSSPEDLIAGVRDAARGESVLSKQVASKIMGRMNNPMTALSAREIEVVSL 160

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++ EI +KL L+  TV +++G    KLD  +R  A+A+A + G I
Sbjct: 161 VAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGII 210


>gi|256396450|ref|YP_003118014.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362676|gb|ACU76173.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 211

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    LA  V + A G          +L  + R  AA+ LT RE   L L
Sbjct: 102 AGATGYLLKDTPRADLAEAVRLAARGETVLAPAVAAKLVSRLRQPAAQPLTPREREVLAL 161

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + EI  +L +S  TV  +L  A  KL   +R  A+ KA+  G +
Sbjct: 162 VARGLANAEIGRELFISEATVKTHLVRAFGKLGVDDRTAAVTKAMAQGLL 211


>gi|296119236|ref|ZP_06837805.1| two-component system response regulator [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967757|gb|EFG81013.1| two-component system response regulator [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 212

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +  + L + V   A G           L  +  +   +LT RE   LQL 
Sbjct: 104 AGAVGYLLKDAPPVELTSAVRSAAEGDSALSSMVADRLMTRVRTPRSSLTPRELEVLQLV 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EI ++L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 164 AGGSSNREIGQELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212


>gi|302544315|ref|ZP_07296657.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461933|gb|EFL25026.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 229

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCL 182
                G+++  +E   L N V   A G  +        L    +  S    LTERET  L
Sbjct: 96  RAGAIGFLLKNAEADDLRNAVKAAAAGQIHVSPAAISRLMGQVREPSGPEQLTERETEVL 155

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +   G  ++EIA  L +   TV  Y+     KL   +R QA   A++ G +
Sbjct: 156 TMLARGKANKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207


>gi|218441961|ref|YP_002380290.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218174689|gb|ACK73422.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 210

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V+++      +++    NL+ERE   L+L  +G ++ EIAE+L LS +T+  ++ 
Sbjct: 127 LIARLVLSNLKAPIPQQNLNISNLSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVR 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A+R G +
Sbjct: 187 GIMNKLAVDDRVQAAVVALRSGIV 210


>gi|28378203|ref|NP_785095.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254556410|ref|YP_003062827.1| response regulator [Lactobacillus plantarum JDM1]
 gi|28271038|emb|CAD63943.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254045337|gb|ACT62130.1| response regulator [Lactobacillus plantarum JDM1]
          Length = 217

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE     L   GY+++EIA KL +S  TV A+  +   KL   NR   I  AI   
Sbjct: 154 GLSKREREVFPLVALGYSNKEIAAKLFISTKTVEAHKANIMRKLALNNRADLIRYAIHHH 213

Query: 233 YI 234
            I
Sbjct: 214 LI 215


>gi|288553643|ref|YP_003425578.1| transcriptional regulator [Bacillus pseudofirmus OF4]
 gi|288544803|gb|ADC48686.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus pseudofirmus OF4]
          Length = 74

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE    +L     T+ EIA++L +S  TV  ++ +   KL    R QA+ + I
Sbjct: 8   PKPLLTKREREVFELLVQDKTTREIAQELFISEKTVRNHISNTMQKLGVKGRSQAVIELI 67

Query: 230 RFGYI 234
           R G I
Sbjct: 68  RLGEI 72


>gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040371|gb|ACT57167.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 246

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 16/215 (7%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
           R++ +   + A +F L   +    F  ++       ++  D      +  +    + L  
Sbjct: 48  RMYALTEYVGASHFLLVRWDL---FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                 P+        T+ E+         G    +  + F V     + G ++   +  
Sbjct: 105 PTELFCPVF------HTLPEN----ITPPAGMDNRYCSLTFDV--ARIRIGLMLLFPKGR 152

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           ++  + + E           F             LT RE  CL    +G TS+EIA  LG
Sbjct: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILG 211

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S +TVN Y+ S   K     R  AIA A+R   +
Sbjct: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246


>gi|148983791|ref|ZP_01817110.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923938|gb|EDK75050.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301799497|emb|CBW32043.1| response regulator protein [Streptococcus pneumoniae OXC141]
          Length = 210

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA+ L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQATVYAFQHHLV 205


>gi|73537441|ref|YP_297808.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120778|gb|AAZ62964.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia
           eutropha JMP134]
          Length = 947

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 5/152 (3%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLA 142
           I+     + T   +   + +          G    +                  +   L 
Sbjct: 797 ILLAQAYQRTGDGAQALVVMAEALRFGAAEGF-VRIFADEGDEVRRLVAQACARQGGNLP 855

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +  +    GAC Q            +     LT +E   LQL  +G+++  +A++L +S 
Sbjct: 856 SAYVERLLGACGQGPDVAPSGQAAPAPLVEPLTPKEQKVLQLLAEGFSNVAMAQRLFVSE 915

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  +L + + KL A NR QA+A A + G +
Sbjct: 916 TTVRTHLRNISAKLHASNRTQAVAIARQLGLL 947


>gi|85703125|ref|ZP_01034229.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
 gi|85672053|gb|EAQ26910.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
          Length = 251

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 10/228 (4%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILI 69
           ++S++EL                                     L N+     D+     
Sbjct: 13  AASIEELWDLHTRFMADYGFDRLIYGYTRYRTATSLGDPDDFLMLTNHSPRYTDVFVGEG 72

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFP---VR 123
             +    +           W  +++      +    +            AG +     + 
Sbjct: 73  LYFNAPMVRWALDNDGACSWSVLRDMIDSGTLTKQERRVFEFNQSHGVTAGYSISFKSLS 132

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETS 180
                   +      +    + + +           +     L    ++  R LT R+  
Sbjct: 133 PRTKGAIALTAQKGMMQSEVDALWKKSGEQILALNNVAHLRILSLPYTAPGRALTPRQRE 192

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            L   GDG T ++IA  +GL+  TV  +L  A   L      QA+ KA
Sbjct: 193 VLGWVGDGKTVQDIAIIMGLTSDTVEKHLRLARHALSVETTAQAVLKA 240


>gi|16080942|ref|NP_391770.1| two-component response regulator YxjM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311860|ref|ZP_03593707.1| hypothetical protein Bsubs1_20996 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316184|ref|ZP_03597989.1| hypothetical protein BsubsN3_20907 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321096|ref|ZP_03602390.1| hypothetical protein BsubsJ_20855 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325380|ref|ZP_03606674.1| hypothetical protein BsubsS_21006 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|20141933|sp|P55184|YXJL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yxjL
 gi|1783236|dbj|BAA11713.1| yxjL [Bacillus subtilis]
 gi|2636426|emb|CAB15917.1| two-component response regulator [YxjM] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 218

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAE 196
              A    I       ++I++     ++  +   A   T+RE   LQ    G  +E+IAE
Sbjct: 120 RAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAE 179

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KL +S  TV  ++     K +A +R QA+  AIR G +
Sbjct: 180 KLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|325520628|gb|EGC99691.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 109

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                 + +++ F+ + K    A   LT RE   L    +G T+ EI + L +S  TVN 
Sbjct: 21  WLANLSHSLMSRFM-VPKLSPEARVALTAREREVLCWTAEGKTACEIGQILSISERTVNF 79

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL A N++QA+ KAI  G I
Sbjct: 80  HVNNILEKLGATNKVQAVVKAISAGLI 106


>gi|324991970|gb|EGC23892.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
          Length = 210

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|303263546|ref|ZP_07349469.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|302647319|gb|EFL77543.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
          Length = 211

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +        LT R
Sbjct: 90  MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA+ L +S+ TV  ++ +   KL+  +R QA   A +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|159039051|ref|YP_001538304.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157917886|gb|ABV99313.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 221

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184
              + +V  T+    +       A         D  E  K+R + +   L+ RE   L+L
Sbjct: 104 AGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRL 163

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG +   IA++L +S  T   ++     KL A NR QA+  A+R G +
Sbjct: 164 LADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213


>gi|302525941|ref|ZP_07278283.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434836|gb|EFL06652.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 214

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            I      +LA + ++        +           ++    LTERE   L+L   G ++
Sbjct: 112 EIVAGIRTVLAGDSLL----FPAAIRGMAARRSPGAAAPLDFLTERERDVLRLMAAGLSN 167

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA +L L + TV  ++G+   KL A +R QA+ +A   G++
Sbjct: 168 GEIAAELYLGLQTVKTHVGNVLSKLGARDRTQAVIRAYESGFV 210


>gi|256788589|ref|ZP_05527020.1| two component response regulator [Streptomyces lividans TK24]
 gi|289772481|ref|ZP_06531859.1| two component response regulator [Streptomyces lividans TK24]
 gi|289702680|gb|EFD70109.1| two component response regulator [Streptomyces lividans TK24]
          Length = 213

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSA--ARNLTERE 178
           +R G     Y     + L  A   +   H     +V    L   +  S    A +LTERE
Sbjct: 97  LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESSSGPGRAGSLTERE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210


>gi|302518567|ref|ZP_07270909.1| two-component system regulator [Streptomyces sp. SPB78]
 gi|302427462|gb|EFK99277.1| two-component system regulator [Streptomyces sp. SPB78]
          Length = 226

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 34/232 (14%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   ++A  F L           R+           D   +   L     
Sbjct: 13  VDDHPMWRDAVARDLEAAGFELVATAGDGPQAVRRATAT-----RPDVLVLDLNLPGL-- 65

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +      +                  +L V +       A +   V+ G        
Sbjct: 66  -PGVEVCKRLVR--------------ERPELHVLVLSASGEHADVLEAVKSGATGYLVKS 110

Query: 134 FTSEF--LMLANEVIIEAHG---ACYQVITDFLELFKKRSS-------AARNLTERETSC 181
            ++E     +    + +A         V+ ++  L  +              LTERET  
Sbjct: 111 ASTEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPETPRLTERETEV 170

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 171 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 222


>gi|218291120|ref|ZP_03495135.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|258511821|ref|YP_003185255.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218238931|gb|EED06139.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|257478547|gb|ACV58866.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 75

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE    +L     T++EIA +L +S  TV  ++ +   KL+   R QA+ + +R G 
Sbjct: 13  LTNREREVFELLVQDKTTKEIASQLFVSEKTVRNHISNVMKKLNVKGRSQAVVELVRLGE 72

Query: 234 I 234
           I
Sbjct: 73  I 73


>gi|297158982|gb|ADI08694.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 235

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 37/74 (50%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L       S    LT RET  L+L  +G ++ EIA +L +S  TV  ++     KL A +
Sbjct: 144 LRPHTAEPSPLALLTPRETEVLRLIAEGLSNAEIAARLTVSAETVKTHVSRVLAKLGARD 203

Query: 221 RIQAIAKAIRFGYI 234
           R QA+  A  FG +
Sbjct: 204 RAQAVMLAYEFGLV 217


>gi|171912672|ref|ZP_02928142.1| two-component response regulator [Verrucomicrobium spinosum DSM
           4136]
          Length = 210

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY+  ++    L   +     G  Y        L ++        + RE   L  
Sbjct: 101 RAGALGYLQKSAPREDLLKAIRTVGLGKRYLPGDIAQRLAERLGRPEP--SPREREVLAQ 158

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +++EIA  LGLS  TV  ++ +   KL A +R QA+ +AIR G +
Sbjct: 159 MAKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQDRTQAVTEAIRRGLL 208


>gi|301059949|ref|ZP_07200832.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
 gi|300445958|gb|EFK09840.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
          Length = 294

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L +  +G ++ EI+  L +S HTV +++     KL   +R QA   A R  
Sbjct: 233 PLTPRELEVLCILAEGTSNNEISHMLNISPHTVKSHIIHIFNKLGVNDRTQAAVWAARHN 292

Query: 233 YI 234
            I
Sbjct: 293 LI 294


>gi|302867524|ref|YP_003836161.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302570383|gb|ADL46585.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 219

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194
               + +   ++        V      +     + A   LT RE   L+L  DG  + EI
Sbjct: 119 GIRTVASGAALLAPEVTRQLVGRYAARIRPAEGTPADVGLTPRELEVLRLIADGLANSEI 178

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L +S  TV  Y+     KLD  +R+QA+  A R G +
Sbjct: 179 AARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTGLV 218


>gi|222148404|ref|YP_002549361.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|68449749|gb|AAY97861.1| AvsR [Agrobacterium vitis]
 gi|221735392|gb|ACM36355.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 246

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 12/234 (5%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             + ++S +  +  L+ +Q             +         +     H +D  + D   
Sbjct: 13  WLETATSAK-WTDFLNRLQISYNLSGCLYMDASITSAGALVYRYG---HTFDKQAKDPIL 68

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
           +L      + L   +  + P+    +    + E    L  +L    LP   +++P+    
Sbjct: 69  MLDAPVLRNVLSQLSRAMEPVDMHDL--AQLSEEGLLLRSKLRDLPLPRQAVSYPLLSVD 126

Query: 127 HKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFL-ELFKKRSSAARNLTERETS 180
            +   +   S                + H    +     +      R      LT RE  
Sbjct: 127 GRGAILAIASNACEEEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGTRLGGVPTLTRREQE 186

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+    G +  E A  LG+S  TV  ++ +A  KLDAV+  QA+AKA++ G I
Sbjct: 187 TLRWTAAGKSYWETAVILGISERTVRYFMANARTKLDAVSNTQAVAKALQRGLI 240


>gi|254393044|ref|ZP_05008206.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706693|gb|EDY52505.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 221

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 151 GACYQVITDFLELFKKRSSA-------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           G    V+ ++  L  + +         A  LT+RET  L+L   G + ++IAE+L +S  
Sbjct: 123 GLAGLVLGEYRRLAGEPAPTPGGPEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVISHR 182

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 183 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|328883286|emb|CCA56525.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 225

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++  +            + +   E   K       LT+RE   + L   G ++ 
Sbjct: 119 VHSGDAVVAPSTTRRLLDRFSPMLPSSGKEPEHKELG---RLTDREREVMLLVAQGLSNG 175

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L LS  TV  ++G    KL   +R+Q +  A   G +
Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYESGLV 217


>gi|297624725|ref|YP_003706159.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297165905|gb|ADI15616.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 210

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     LT RE   ++L   GY++ EIA  L +S  TV  ++ S   KL   +R +
Sbjct: 140 DYPSLETPDPLTGREREVVRLMAGGYSNREIALALHISQGTVKNHVSSVLSKLGVRDRTR 199

Query: 224 AIAKAIRFGYI 234
           A+ KA+  GY+
Sbjct: 200 AVLKALELGYV 210


>gi|159897512|ref|YP_001543759.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890551|gb|ABX03631.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 213

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARNLTERETS 180
           +R G          +  L+ A   +          +I    +L    +    +LT+RE  
Sbjct: 98  LRAGATGYVLKRAAATELVSAIRAVQRGDSYLDPALIAKLNQLGDSDTVKLADLTDRELE 157

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+L  +G T+ +IA +L +SV TV ++  +   KLD  +R   +  AIR G I
Sbjct: 158 VLKLVAEGLTNRQIAAQLVISVKTVQSHRTNIMEKLDLHDRTDLVKYAIRRGMI 211


>gi|221633346|ref|YP_002522571.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
 gi|221155795|gb|ACM04922.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
          Length = 246

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               ++ ++  L  K  +  ++L++RE + L+L   GY + +IA+ L L+  TV   L +
Sbjct: 155 LAPILMREYQRLLTKAPTRGQDLSDRELTMLRLLAQGYNNRQIADALNLAESTVKNNLSA 214

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R QA+  AI  G +
Sbjct: 215 LFQKLGVRDRTQAVIYAISHGLV 237


>gi|329941415|ref|ZP_08290694.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299946|gb|EGG43845.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L+L  DG ++ EIA  L +S  TV  ++     KL+  +R+QA+  
Sbjct: 159 APEDIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTFVSRILTKLNLRDRVQAVVY 218

Query: 228 AIRFGY 233
           A R G 
Sbjct: 219 AFRHGL 224


>gi|225020347|ref|ZP_03709539.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946736|gb|EEG27945.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 223

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA------ 170
           L    +G++   SE   LA  V   A+G           +IT  L+  +           
Sbjct: 96  LRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATRSLITRMLQPTETDPEPYANPEL 155

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   L+L   G +++EIA++L +S+HT   ++G+   KL A +R Q +     
Sbjct: 156 IDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYE 215

Query: 231 FGYI 234
            G +
Sbjct: 216 SGLV 219


>gi|167646083|ref|YP_001683746.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348513|gb|ABZ71248.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 244

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 78/239 (32%), Gaps = 24/239 (10%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFAL----YTINSALDFPRRQQLICELHNY 57
           S N  + +++++  +    L  + +     +       +        P          + 
Sbjct: 20  SRNLASERRAAAGPD--QGLRALAHEHGFYSALYLHIGHAACGRAAAPEGPPSRLVASS- 76

Query: 58  DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117
              +           G            P  W +  E+              G      G
Sbjct: 77  -PIALRQYGEA--LTGSSIARRAAGSHRPFAWTNTDEDMP------------GLSGRHVG 121

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLT 175
           +A PV+      G V    + L     +  E   A      +  +  L   R +A   LT
Sbjct: 122 LAIPVQDHAAGPGLVALIGQDLDRVRRLAREEAAALAFAAAELHQSILASVRPAATAALT 181

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE  CL+ A  G T  +  + LG++  TV  +L +   KLDA N++ A+A A+  G +
Sbjct: 182 AREIECLRFAAVGRTVADTGQALGITSRTVEFHLKNVAEKLDATNKVHAVAIAVSQGLV 240


>gi|328882017|emb|CCA55256.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 237

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARN 173
               L    +G+V+       +A  V + A G         + +     L    +     
Sbjct: 111 VTAALSAGASGFVLKRLPVRQIAEAVRVVAAGEAILFPATLRRMVAVRPLDSAAALPRAA 170

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L   G ++ EIAE L +S+ TV  ++G+   KL A NR  A+  A   G 
Sbjct: 171 LTGREEEVLRLMATGLSNPEIAESLTVSLETVKTHVGNVLTKLGAQNRTHAVVIAYESGL 230

Query: 234 I 234
           +
Sbjct: 231 V 231


>gi|294628215|ref|ZP_06706775.1| regulatory protein, LuxR [Streptomyces sp. e14]
 gi|292831548|gb|EFF89897.1| regulatory protein, LuxR [Streptomyces sp. e14]
          Length = 331

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 69/227 (30%), Gaps = 13/227 (5%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L  +  RL  +        F    +       + Q  +      D  +      
Sbjct: 118 AERLVGLDAIQRRLESLAR-----GFEEECLAIEPGGAQSQASLDASRPLDAQALARGVR 172

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           L   Y D       +      +     E   +      +     +   +    P+     
Sbjct: 173 LRTVYQDS----ARNDPATSAYARWISEQGGQVRTSPILPPRMLIFDRSTAVVPIDPANT 228

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           + G +  ++  ++ +   + E                   +         E   L+L   
Sbjct: 229 RLGALCTSAPGIVASLVALFEQTWQAAVPFGTDHRGSLDDADVI----PAERELLRLLAS 284

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T E   ++LG+S+ TV   + +   +LDA +R +A  KA + G++
Sbjct: 285 GMTDEAAGKRLGVSLRTVRRQMAALMQRLDASSRFEAGLKAAQRGWL 331


>gi|305679871|ref|ZP_07402681.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660491|gb|EFM49988.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 223

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA------ 170
           L    +G++   SE   LA  V   A+G           +IT  L+  +           
Sbjct: 96  LRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATRSLITRMLQPTEADPEPYANPEL 155

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   L+L   G +++EIA++L +S+HT   ++G+   KL A +R Q +     
Sbjct: 156 IDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYE 215

Query: 231 FGYI 234
            G +
Sbjct: 216 SGLV 219


>gi|228995587|ref|ZP_04155253.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17]
 gi|229003214|ref|ZP_04161054.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4]
 gi|228758053|gb|EEM07258.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4]
 gi|228764159|gb|EEM13040.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17]
          Length = 216

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + +      LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R Q
Sbjct: 143 EQNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQ 202

Query: 224 AIAKAIRFGY 233
           A   A+R+G 
Sbjct: 203 AAIYAVRYGI 212


>gi|254476478|ref|ZP_05089864.1| autoinducer-binding transcriptional regulator, LuxR family
           [Ruegeria sp. R11]
 gi|214030721|gb|EEB71556.1| autoinducer-binding transcriptional regulator, LuxR family
           [Ruegeria sp. R11]
          Length = 252

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 16/232 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARN----FALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
            + +L+EL   L  ++     +     +      +       +  +  L N+  +  +  
Sbjct: 12  AAKTLEEL--WLEHVRQMGDYKFDKLLYGYTRQKTKTSLGDPEDFV-ILSNHCSEYVEGF 68

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFPV 122
                 +    L        P  W  +Q++     +  S Q  +         AG     
Sbjct: 69  VNSGLYFDAPMLHWALENDGPGSWTLVQDQISNGGLSESAQKVLEFNAKHGVTAGYTVSF 128

Query: 123 RLGFHKN-GYVIFTSEFL--MLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTE 176
                +  G +   +         E I   HG    ++ +   L           R+LT 
Sbjct: 129 NSSSDRFKGAISLAACDGLNQDDVEDIWREHGRDITLMNNMAHLKILTLPYQPPNRSLTR 188

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           R+   LQ  GDG T+++IA  +GL+  TV  +L  A   L       A+ KA
Sbjct: 189 RQREALQWVGDGKTTQDIAVLMGLTTATVEKHLRLAREALSVETTAHAVLKA 240


>gi|54025090|ref|YP_119332.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016598|dbj|BAD57968.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 219

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + ++    LT RE   L+    G ++ EIA +L LS  TV  ++G    KL   +R+QA+
Sbjct: 147 RDAAVLDVLTAREREVLEQIAAGRSNAEIAAELFLSEATVKTHVGRVLTKLGLRDRVQAV 206

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 207 VLAYETGLV 215


>gi|318061446|ref|ZP_07980167.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318077421|ref|ZP_07984753.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 229

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +F +         ++ A     +++T         +     L+ RE   L L   G ++
Sbjct: 121 ELFAAVRATADGRSVL-APAVASRLVTSLRAPGADETPPRTPLSAREREVLALVARGTSN 179

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA  L LS  TV  +L     KL   +R  A+A     G +
Sbjct: 180 REIARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 222


>gi|315221997|ref|ZP_07863908.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188963|gb|EFU22667.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 210

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|259418954|ref|ZP_05742871.1| putative autoinducer binding domain protein [Silicibacter sp.
           TrichCH4B]
 gi|259345176|gb|EEW57030.1| putative autoinducer binding domain protein [Silicibacter sp.
           TrichCH4B]
          Length = 194

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 60/209 (28%), Gaps = 21/209 (10%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  I   ++   F+ Y I         Q        +  D  +          D   F
Sbjct: 3   TTLQSIGAELEKLGFSKYAIGKGFHGSEPQ----FTSTFREDWQNHYFENGFFNLDPLPF 58

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
              +G  PI W  I+            +          G AF +       GYV+ +   
Sbjct: 59  CALAGTAPIRWTEIKRRMRKSP----VMNAAEDYGMNEGFAFSLN------GYVVSSVHD 108

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             L+   +         V      L    S     LT  +   + L G G    +IA+ L
Sbjct: 109 GSLSKGDL-------QFVQESIRRLAISSSDMIEPLTSSQQGLVDLLGVGLQYNQIADIL 161

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G+SV  V +       K  A +  Q +  
Sbjct: 162 GISVDGVKSAKKRLFQKYGANSDAQLLRI 190


>gi|297625882|ref|YP_003687645.1| LuxR family transcriptional regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921647|emb|CBL56204.1| Regulatory protein, LuxR:Response regulator receiver
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 232

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 32/235 (13%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
            PR    +  +   +  ++      +         ++     D      ++  T  D  L
Sbjct: 12  EPRPEGPRRVVLVDDHDIFRAGVRHELTAAAPDEIDVVGEAGDVEQAVKVITGTTPDVVL 71

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                         +          ++  ++         +A  V         VI    
Sbjct: 72  --------------LDVHLPGGGGAEVVRQVHQIDPKITFLALSVSDAAEDVIAVIRAGA 117

Query: 138 FL----MLANEVIIEAHGACY---QVITDFLELF-----------KKRSSAARNLTERET 179
                  ++   ++EA G       V +  L  F           +        L++RE 
Sbjct: 118 RGYVTKSISTADLVEAIGRVATGDAVFSPRLAGFVLDAFSGSISVESIDEDLDRLSQRER 177

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++L   GYT +E+A +L +S+ TV  ++ +   KL   NR +    A     +
Sbjct: 178 EVMKLIARGYTYKEVARELFISIKTVETHVSNVLRKLQLSNRHELTKWATDRKLV 232


>gi|326328660|ref|ZP_08195000.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325953621|gb|EGD45621.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 140 MLANEVIIEAHGACY------------QVITDFLELFKKR--SSAARNLTERETSCLQLA 185
             + + +  A    +            QVI  F    +KR      + LTERE   L+  
Sbjct: 108 DASPDELASAIRVVHAGEALLSPSVTRQVIAQFARAPRKRKQDPRLKQLTEREREVLENI 167

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EIA +L L+  TV  ++     KL   +R QA+  A   G +
Sbjct: 168 ARGSSNSEIAAELFLAEQTVKTHVSRILGKLGLRDRAQAVVFAYESGLV 216


>gi|307328222|ref|ZP_07607400.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886056|gb|EFN17064.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 232

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCL 182
                G+++  +E   L N V   A G  +        L    +  S    LTERET  L
Sbjct: 99  RAGAIGFLLKNAEADDLRNAVKAAAVGQIHVSPAAISRLMGQVREPSGPEQLTERETEVL 158

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +   G  ++EIA  L +   TV  Y+     KL   +R QA   A++ G +
Sbjct: 159 TMLARGKANKEIAHDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 210


>gi|300779699|ref|ZP_07089555.1| LuxR family DNA-binding response regulator [Corynebacterium
           genitalium ATCC 33030]
 gi|300533809|gb|EFK54868.1| LuxR family DNA-binding response regulator [Corynebacterium
           genitalium ATCC 33030]
          Length = 198

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 42/109 (38%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + V+  A             L ++       L+ RE   L+  
Sbjct: 90  AGAMGYLLKDAPEDELHDAVVAAAQRERTLSPQVANTLAERVLKPDEALSGREIELLKAL 149

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EIAE L +S  TV  +L     KL   NR  A+ KA     I
Sbjct: 150 QTGMSNREIAEALFISQATVKTHLIHIYAKLGVDNRTAAVDKARERRII 198


>gi|226311283|ref|YP_002771177.1| germination protein [Brevibacillus brevis NBRC 100599]
 gi|226094231|dbj|BAH42673.1| germination protein [Brevibacillus brevis NBRC 100599]
          Length = 76

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L     T++EIA +L +S  TV  ++ +   KL    R QA+ + +R G
Sbjct: 14  LTNREREVFELLVQDKTTKEIAGQLFISEKTVRNHISNVMQKLGVKGRSQAVVELVRLG 72


>gi|89098035|ref|ZP_01170921.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087198|gb|EAR66313.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 210

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176
           L    NG+++ TS+   L   +     G          +V+   L+      +    LT 
Sbjct: 94  LREGTNGFLLKTSDGPRLLQSIRSCLEGGISIHEQVAAKVMPKLLDHSCHEEAEV-PLTP 152

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE    +L G G T++EIA +L LSV TV  +L     KLD  +R Q    A++   +
Sbjct: 153 RERDIARLIGHGKTNKEIANELYLSVGTVKNHLTQILQKLDLRDRTQLAIFAVKNDIL 210


>gi|295839668|ref|ZP_06826601.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|197698511|gb|EDY45444.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 239

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178
           +R G     Y     E L  A   +   H     +V    L   ++    +R  +LTERE
Sbjct: 123 LRAGAAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVARTLLAQEEQAPQPSRGGSLTERE 182

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R GY
Sbjct: 183 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGY 237


>gi|254411603|ref|ZP_05025379.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181325|gb|EDX76313.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 225

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NL++RE   L+L  +G ++ EIA KL LS +TV  ++     KL   +R+QA   A+R G
Sbjct: 164 NLSQRELEVLKLIVEGNSNPEIAAKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVALRSG 223

Query: 233 YI 234
            +
Sbjct: 224 IV 225


>gi|16330324|ref|NP_441052.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652813|dbj|BAA17732.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 226

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               V+ +      +  +   +L+ERE   L+L  +G +++EIA+ L LS +T+  ++  
Sbjct: 144 IARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRG 203

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+QA   A+R G +
Sbjct: 204 IMNKLSVDDRVQAAVIALRSGLV 226


>gi|297567226|ref|YP_003686198.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851675|gb|ADH64690.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 212

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           SE +  A+   +  H    + +   +   + R     +LT RET  L+L   G++++ IA
Sbjct: 117 SEAIHAASRGEVRLHPEAAKRLMREVRTPEMR----ESLTPRETEILKLLAQGHSNKHIA 172

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  +   TV A++ S   KL   +R QA   A++ G +
Sbjct: 173 RETKVEERTVKAHVSSILAKLGLSSRTQAALFALKEGLV 211


>gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 246

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 6/223 (2%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALD---FPRRQQLICELHNYDLDSGDIPNILIE 70
           + +       +Q  ++  +F +    +A +     ++      + +  +   D    L +
Sbjct: 25  VDDEPGLREAVQAYLEDSDFTVDVAGNAREGWELLQQNLPDLVITDIMMPEVDGYQFLKQ 84

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D            +  + +  + +          L     P   +   V+    +  
Sbjct: 85  MREDPLFKALPVVF--LTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVVI-VKNLLERRA 141

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
               +S         +         ++     +         +LT RE S L L   G  
Sbjct: 142 VATASSSDGNPDIAALAGQIARIENMLKGKSGITPTPPPIKIDLTPREQSVLDLVAQGLM 201

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++EIA +L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 202 NKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 244


>gi|167463570|ref|ZP_02328659.1| hypothetical protein Plarl_13624 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381266|ref|ZP_08055269.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154842|gb|EFX47113.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 218

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 150 HGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           H A  +VI  +L       + A + LT+RE   L L   GYT++E+A+ L +S  TV  +
Sbjct: 129 HAAAKKVIEGYLQSASHDHTDAFQQLTDREKEILSLVAKGYTNKEVADLLSISAKTVENH 188

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
             +   KL+   R   I  A++ G +
Sbjct: 189 KANIMDKLNLNTRRDLIRFAVKRGLL 214


>gi|17228408|ref|NP_484956.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130259|dbj|BAB72870.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 225

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NL+ RE   L+L  +G ++ EIAEKL LS +TV  ++     KL   +R+QA   A+R G
Sbjct: 164 NLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSG 223

Query: 233 YI 234
            +
Sbjct: 224 LV 225


>gi|315506070|ref|YP_004084957.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412689|gb|ADU10806.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 603

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194
               + +   ++        V      +     + A   LT RE   L+L  DG ++ EI
Sbjct: 503 GIRTVASGAALLAPEVTRQLVGRYAARIRPAEGTPADVGLTPRELEVLRLIADGLSNSEI 562

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L +S  TV  Y+     KLD  +R+QA+  A R G +
Sbjct: 563 AARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTGLV 602


>gi|222151813|ref|YP_002560973.1| two-component response regulator [Macrococcus caseolyticus
           JCSC5402]
 gi|222120942|dbj|BAH18277.1| two-component response regulator [Macrococcus caseolyticus
           JCSC5402]
          Length = 210

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L+   +G T++EIAEKL +S  TV  ++     KL+  +R QA    +++ 
Sbjct: 148 PLSKRELEVLKAMSEGLTNKEIAEKLFVSEKTVKTHVSHIFAKLEVGDRTQASMYGVKYK 207

Query: 233 YI 234
            I
Sbjct: 208 LI 209


>gi|171320576|ref|ZP_02909599.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171094179|gb|EDT39263.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 243

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 62/230 (26%), Gaps = 21/230 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72
             +    L        A  FA  +           +    EL                  
Sbjct: 12  AADWQRALRACVAAFDA--FASPSAIVFYRLDLSGEPADFELFGMPESMHRTYLA-RYRM 68

Query: 73  GDDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVR----------LEGGLLPFAG 117
            D        +G+  ++     + +E    S+   +   R          L G      G
Sbjct: 69  LDPLHPSRCAAGIRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRGDAGHTVG 128

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLT 175
               +R G            F     + +          +   L + +   R      LT
Sbjct: 129 AFSLLRFGQGDAHGNGTAGRFAPGEVDALARLQPVAEAALAPLLRVRRGIHRIGCEERLT 188

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            RE    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 189 YREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 238


>gi|29832624|ref|NP_827258.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609744|dbj|BAC73793.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 215

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 151 GACYQVITDFLELFKKRSSA-------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           G    V+ ++  L  + + A       A  LT+RET  L+L   G + ++IAE+L +S  
Sbjct: 123 GLAGLVLGEYRRLASEPAPATGAGEPRAPQLTDRETEVLRLVAKGLSYKQIAERLVISHR 182

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 183 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|298242057|ref|ZP_06965864.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555111|gb|EFH88975.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+ +      +  +    L+ERE   L+L   G ++ EIA +L +S  TV  +L 
Sbjct: 133 RVAARVVRELRGTRSEAPNPFVELSERELEVLRLIAGGLSNTEIAARLTISEKTVKGHLS 192

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL  ++R QA   A + G I
Sbjct: 193 NILSKLHLMDRTQAAVFAWQQGLI 216


>gi|288554158|ref|YP_003426093.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288545318|gb|ADC49201.1| two-component response regulator of extracellular degradative
           enzyme [Bacillus pseudofirmus OF4]
          Length = 233

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG ++  I E L +S  TV  ++ +   K+   +R QA+ +AI
Sbjct: 166 PLHILTRRECEVLQLMTDGQSNRAIGESLYISEKTVKNHVSNILQKMSVNDRTQAVVEAI 225

Query: 230 RFGYI 234
           + GY+
Sbjct: 226 KKGYV 230


>gi|229143361|ref|ZP_04271792.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228640168|gb|EEK96567.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
          Length = 213

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIA+ L +S  TV  ++     KL+  +R QA+  A+R  
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAKVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|119717167|ref|YP_924132.1| two component LuxR family transcriptional regulator [Nocardioides
           sp. JS614]
 gi|119537828|gb|ABL82445.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 215

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 51/108 (47%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              GY+  T+    L   V   A G      T    L  KRSS A  LT+RE + L+L  
Sbjct: 101 GAAGYLSKTAPGRELVEAVRAVAGGNSVLQPTLMAALLAKRSSPANTLTDRERAVLRLLA 160

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G  +++IA +LG+S  TV  +      KL   +R +A+ +AI    +
Sbjct: 161 EGMHNKQIASRLGISARTVERHCDRIYGKLGVTSRTEAVVRAISANLL 208


>gi|222081960|ref|YP_002541325.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726639|gb|ACM29728.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 244

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 61/218 (27%), Gaps = 17/218 (7%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFP-------RRQQLICELHNYDLDSGDIPNIL 68
           ++     +    +    F ++  N                     + N+           
Sbjct: 27  DIHSLEAVFSKTLSHLGFPMFAYNIHRMSASFIMNESTVDPQNFIISNFPNKWLTHDFHQ 86

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    +G     W  +     I+ + +  ++         GI  P+     +
Sbjct: 87  KYKEIDPTLKWVGTGQGIAQWSDLLTSDDIDKNQRRLLQEAWDAGLTNGITLPIMTELGE 146

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE----------LFKKRSSAARNLTERE 178
              +    E     NE I+ A      +   +            L    +     L+ RE
Sbjct: 147 AVAISVVPEPGTGNNERILAALPIVQILAQGYHRKAKGILLGHSLKVGSARRKSFLSPRE 206

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
              L     G T+ EIAE L +S  +V+ Y   A  KL
Sbjct: 207 IDVLHWMARGKTAWEIAEILSISQKSVDFYTDMAKTKL 244


>gi|330860763|emb|CBX71053.1| nitrate/nitrite response regulator protein narP [Yersinia
           enterocolitica W22703]
          Length = 236

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    I   V         +I              E+++E      +        
Sbjct: 99  LRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDA 158

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +T +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 159 VTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 218

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A    +  
Sbjct: 219 NVRSRVAATIMYLEN 233


>gi|239934234|ref|ZP_04691187.1| two component LuxR family transcriptional regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291442679|ref|ZP_06582069.1| two component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345574|gb|EFE72530.1| two component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 230

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 44/106 (41%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           NG         +LA  V     G   Q +         R    R L  RE   LQL  +G
Sbjct: 121 NGIRTVARGEALLAPAVTRHLIGHFAQHLRPADTSRPARQDVVRALAPRELEVLQLIAEG 180

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIA  + ++  TV  Y+     KLD  +R+QA+  A R G +
Sbjct: 181 LSNAEIAAAMFITPETVKTYVSRILAKLDLRDRVQAVVLAYRVGLV 226


>gi|229492199|ref|ZP_04386007.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229320825|gb|EEN86638.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 205

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +  + L + V   A G          +L  +      +L+ RE   L+L 
Sbjct: 97  AGASGYLLKDTPPVELLSAVRAAASGDSVLSPAIASKLMTRVRKPETSLSPREIEVLKLV 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G ++ EI ++L LS  TV ++L     KL   +R  A+A+A   G
Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARARELG 203


>gi|254522679|ref|ZP_05134734.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720270|gb|EED38795.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 201

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 126 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 185

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 186 RDRTRAVLKAFELQLV 201


>gi|190573276|ref|YP_001971121.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011198|emb|CAQ44808.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 213

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +            LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL  
Sbjct: 138 EHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KA     +
Sbjct: 198 RDRTRAVLKAFELQLV 213


>gi|317129844|ref|YP_004096126.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474792|gb|ADU31395.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 74

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + +        LT+RE    +L     T++EIA +L +S  TV  ++ +   KL    R 
Sbjct: 1   MKEHEFRPKPLLTKREREVFELLVQDKTTKEIAAELFISEKTVRNHISNTMQKLGVKGRS 60

Query: 223 QAIAKAIRFG 232
           QA+ + +R G
Sbjct: 61  QAVIELVRLG 70


>gi|251793298|ref|YP_003008026.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534693|gb|ACS97939.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           aphrophilus NJ8700]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V         +I              + ++       Q        
Sbjct: 72  LRAEGVDARIVILTVSDAKSDIFTLIDAGADGYLLKDTEPDTLLSQLKRIAQGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L   +       +LT+RE   L+L   G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNLLIERQSSQEPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A       
Sbjct: 192 NVHSRVAATVLYFEH 206


>gi|123441494|ref|YP_001005480.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088455|emb|CAL11247.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    I   V         +I              E+++E      +        
Sbjct: 72  LRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDA 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +T +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 132 VTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A    +  
Sbjct: 192 NVRSRVAATIMYLEN 206


>gi|294811706|ref|ZP_06770349.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324305|gb|EFG05948.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 253

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +         +       +LT+RE   L+L   G ++ EIA  L +S  TV  ++G
Sbjct: 164 RLLDKYAGHLPSGEEPVPDTLNSLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 223

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A   G +
Sbjct: 224 HVLTKLGLRDRVQAAVYAYESGLV 247


>gi|318606649|emb|CBY28147.1| nitrate/nitrite response regulator protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 236

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    I   V         +I              E+++E      +        
Sbjct: 99  LRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDA 158

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +T +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 159 VTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 218

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A    +  
Sbjct: 219 NVRSRVAATIMYLEN 233


>gi|317054459|ref|YP_004118484.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
 gi|316952454|gb|ADU71928.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 243

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 8/192 (4%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            +  + ++  +  D        Y D  + +  S      W     +     + +      
Sbjct: 43  DMIFISDFPDEISDNYLNNKYQYVDPVIINALSRFTHFSWDENL-KINSMWTVKRIFEKI 101

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLEL 163
                  G AF +    +    ++F      TS+   + N+   E  G         L +
Sbjct: 102 KSHNIIRGHAFVLHENNNNLAMLLFYIDKFLTSDIDDVFNKNRDELQGVLIDTHEMLLSV 161

Query: 164 -FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +         + RE+  L     GYT  ++AE L ++V T+  ++G    K+   N  
Sbjct: 162 YSEGEEVKEDVFSARESEILYWCSKGYTYSQVAEMLNITVSTIKFHMGKVVKKMGVKNAK 221

Query: 223 QAIAKAIRFGYI 234
            AI+  I    I
Sbjct: 222 HAISLGIELKMI 233


>gi|229161240|ref|ZP_04289227.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622336|gb|EEK79175.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 211

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 39/82 (47%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H      +     + K++ +    LT+RE   L+    G +++EIA  L ++  TV  ++
Sbjct: 127 HPKVTPALLGRPAVKKEKENPFAMLTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRF 231
            +   KL+  +R QA   A++ 
Sbjct: 187 SNVLAKLEVDDRTQAALYAVKH 208


>gi|27381525|ref|NP_773054.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354693|dbj|BAC51679.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 62/226 (27%), Gaps = 15/226 (6%)

Query: 6   LTGKKSSSLQEL-SPRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGD 63
           +  ++     +L    L  +   ++A   A     + + +F           N D  +  
Sbjct: 20  VRLQRMDPGADLRQSILPDLLRLLRADFVASYVWRSESANFQHG-----VSLNMDPQNLK 74

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
             +     + D               + +          +             GI   V 
Sbjct: 75  RYDDW-FQFHDPMTAKLRLRRRASFVEEVL-SRRDMIRTEFYNDFLARDGLHHGINMYVF 132

Query: 124 LGFHKNG--YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
            G    G   +   +      +  I    G    +    L    +      +LT RE+  
Sbjct: 133 DGDRDLGDFRIWRAAGRPDFESREIDLLTGLEPFLRGAMLRGMHR----YEDLTARESDV 188

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             L   G T  +I+  L +   TV  ++ +A  K    NR +  A 
Sbjct: 189 ANLVARGCTDRDISRLLNIGFATVRTHINNAMRKRCCANRAELAAL 234


>gi|302533532|ref|ZP_07285874.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442427|gb|EFL14243.1| two-component system response regulator [Streptomyces sp. C]
          Length = 223

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +       
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEQSLPDTLG 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|295130489|ref|YP_003581152.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|291375667|gb|ADD99521.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313772396|gb|EFS38362.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313809915|gb|EFS47636.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313830246|gb|EFS67960.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834047|gb|EFS71761.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314973252|gb|EFT17348.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314975927|gb|EFT20022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984055|gb|EFT28147.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315096164|gb|EFT68140.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327326081|gb|EGE67871.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327446037|gb|EGE92691.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327447984|gb|EGE94638.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328760418|gb|EGF73986.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
          Length = 237

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175
           L    +G+++  ++   L   +   A G           +  +          S A  LT
Sbjct: 92  LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|88809905|ref|ZP_01125411.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH
           7805]
 gi|88786289|gb|EAR17450.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH
           7805]
          Length = 97

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   S   +L+ RE   ++L  +G T++EIAE+L +S  TV+ ++ +   K  + NR+  
Sbjct: 10  EGTGSMNASLSARELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVAL 69

Query: 225 IAKAIRFGYIC 235
           +  A+  G IC
Sbjct: 70  LNWAMDHGKIC 80


>gi|294630527|ref|ZP_06709087.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292833860|gb|EFF92209.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 206

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARN 173
               L    +G+V+       +A  V I A G      A  + +     L    +     
Sbjct: 80  VTAALSAGASGFVLKRRPVRQIAEAVRIVAAGETILFPAALRQMVTARPLSSAEALPKAA 139

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE + L+L   G ++ EIA  L +S+ TV  ++G+   KL A NR  A+  A   G 
Sbjct: 140 LTEREEAVLRLMATGQSNPEIARALTVSLETVKTHVGNVLSKLGAQNRTHAVVIAYESGL 199

Query: 234 I 234
           +
Sbjct: 200 V 200


>gi|21220598|ref|NP_626377.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|5689930|emb|CAB51968.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
          Length = 215

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           G    V+ ++  L  + + AA         LT+RET  L+L   G + ++IAE+L +S  
Sbjct: 123 GLAGLVLGEYRRLASEPAPAAGTDDPGAPRLTDRETEVLRLVAKGLSYKQIAERLVISHR 182

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 183 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|325964863|ref|YP_004242769.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470950|gb|ADX74635.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 217

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    +   V+  A G           L  + S+   +LT RE   L+L 
Sbjct: 104 AGASGYMLKDAPPEQIRQAVLAAAAGETVLAPRAAALLMNRISNPGTSLTPREVQLLELL 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++  IA+++ +S  TV  +L     KL   NR  AIA A +   I
Sbjct: 164 ATGLSNRAIAKQVFISEATVKTHLVHIYGKLGVDNRTAAIAAATQRRII 212


>gi|228989393|ref|ZP_04149382.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM
           12442]
 gi|228770340|gb|EEM18915.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM
           12442]
          Length = 216

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R QA   A+R+
Sbjct: 151 EQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRY 210

Query: 232 GY 233
           G 
Sbjct: 211 GI 212


>gi|115371976|ref|ZP_01459288.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115370941|gb|EAU69864.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL--------MLANEVIIEAHGACYQV 156
              +         +   +R G       I                  + I   H     V
Sbjct: 70  LRAIRREFPDARILVLTLRQGDEDVHQAIQAGARGYLLKGATGPEILDAIRAVHRGLRHV 129

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             +   +  +R   +  LTERE   L+    G ++++IA++L ++  TV A++     KL
Sbjct: 130 APEAAAMLVERVGDS-PLTERERQTLEAMARGRSNKQIAQELSITEATVKAHVTQILSKL 188

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+ +A+R G I
Sbjct: 189 GVDDRTQAVTRALRRGLI 206


>gi|58613938|gb|AAW79571.1| transcriptional activator [Pseudomonas fluorescens]
          Length = 234

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 8/209 (3%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
           +  L L+   + A   A +  ++      ++       N    + D  +       D   
Sbjct: 32  AEVLKLVTELVDADYAASFVWDAQRKKSTQR----VAVNISDATLDSYDQ-YFCQIDHVT 86

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
               + +      ++     +    +  V        + GI           G +     
Sbjct: 87  PALRACVSATNVDNVIARPQLL-GSEFYVDFLKPAGMYHGINIYFFDKGVDVGDLRIWRG 145

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               +  +  E           F+          + L+ RE    +L  +G + +E+A +
Sbjct: 146 AGGQSFTLREERILNSLSPY--FVRSLSPTLHPVQGLSGREADVARLVANGASDKEVARQ 203

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LG++  TV  +L +A  KLD VNR Q   
Sbjct: 204 LGIAFTTVRTHLNNAMCKLDCVNRTQLAR 232


>gi|302038025|ref|YP_003798347.1| putative LuxR family response regulator [Candidatus Nitrospira
           defluvii]
 gi|300606089|emb|CBK42422.1| putative Response regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 235

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  LTERE   ++L  +G ++++IA++L +S  TV  +L S   KL   NR + + +A +
Sbjct: 166 SDGLTEREREVVRLISEGLSNKDIADRLCISSITVRHHLTSIFDKLGVSNRQKLLIRAHQ 225

Query: 231 FGYI 234
            G +
Sbjct: 226 QGLV 229


>gi|296140566|ref|YP_003647809.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296028700|gb|ADG79470.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 218

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +        ++R + A    LT RE   L+    G ++ EIAE L +S  TV  ++    
Sbjct: 135 IAEVTAARSRRRPAPAELGTLTPREREVLEAVAAGRSNAEIAETLFVSEQTVKTHVSKVL 194

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL   +R QA+  A   G +
Sbjct: 195 QKLGLRDRAQAVVYAYETGVV 215


>gi|1429258|emb|CAA67717.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 218

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAE 196
              A    I       ++I++     ++  +   A   T+RE   LQ    G  +E+IAE
Sbjct: 120 RAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAE 179

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KL +S  TV  ++     K +A +R QA+  AIR G +
Sbjct: 180 KLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|188586689|ref|YP_001918234.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351376|gb|ACB85646.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 212

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 161 LELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           L + ++ + +A  NLT RE   L+L G G+T++EIA++L + + TV  ++ +   KL+  
Sbjct: 137 LMMERRENESAYLNLTNREKEVLRLLGKGFTNQEIADELYIGIKTVKTHVSNILDKLELK 196

Query: 220 NRIQAIAKAIRFGY 233
           +R QA   A  +GY
Sbjct: 197 DRTQAAIYAKDYGY 210


>gi|157371727|ref|YP_001479716.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157323491|gb|ABV42588.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 210

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    I   V         +I              E ++E   A  +        
Sbjct: 73  LRNEGVDARIIVLTVSDSRSDVYALIDAGADGYLLKDSEPEQLLEHIRAAAEGKNVISDA 132

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + D+L    ++      LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 133 VADYLSSRSEQHDPFAELTERELDVLQEVARGLSNKQVAAQLHISEETVKVHIRNMLRKL 192

Query: 217 DAVNRIQAIAKAIRF 231
           D  +R+ A    +  
Sbjct: 193 DVRSRVAATVMYLEH 207


>gi|322374953|ref|ZP_08049467.1| DNA-binding response regulator [Streptococcus sp. C300]
 gi|321280453|gb|EFX57492.1| DNA-binding response regulator [Streptococcus sp. C300]
          Length = 199

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 5/155 (3%)

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----L 139
            P+    +  E  +++  ++   +    L    +              +           
Sbjct: 45  EPVDIAILDVEMPVKTGLEVLEWIRAEKLETKVVVVTTFKRPGYFERAVKAGVDAYVLKE 104

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
               +++   H           EL +   +    LTE+E + L+    G +++EIA++L 
Sbjct: 105 RSIADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLY 164

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 165 LSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|319939666|ref|ZP_08014025.1| response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811255|gb|EFW07561.1| response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 210

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|297155058|gb|ADI04770.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 221

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-------ARNLTE 176
           L    +G+++  +    +A+ + + A G           L   R             LT 
Sbjct: 99  LRAGADGFILKRTPSQAIAHAIRLVATGDSVLFPDAVRRLVAARPLPPVGPAAGHAPLTA 158

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RET  L+L   G ++ +IA +L +S+ TV  ++ +   KL A NR QA+  A   G +
Sbjct: 159 RETEILRLMATGLSNPDIAGRLTVSLETVKTHVSNLLTKLGAQNRTQAVILAYESGLV 216


>gi|229009717|ref|ZP_04166941.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048]
 gi|228751597|gb|EEM01399.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048]
          Length = 214

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +        + LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R
Sbjct: 139 AVECNPPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDR 198

Query: 222 IQAIAKAIRFG 232
            QA   A+R+G
Sbjct: 199 TQAAIYAVRYG 209


>gi|254362590|ref|ZP_04978686.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           PHL213]
 gi|261491662|ref|ZP_05988244.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494219|ref|ZP_05990719.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153094197|gb|EDN75082.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           PHL213]
 gi|261310122|gb|EEY11325.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312677|gb|EEY13798.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 209

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 11/134 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         ++                +++            
Sbjct: 69  LRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVDGYLLKDTDTPELLDNIRKAAAGEVVL 128

Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +   L   +  +     LT+RE   LQ    G ++++IA +L +S  TV  ++ +  
Sbjct: 129 SETVRQHLLNRQPENDPLSCLTDRELDVLQWLATGMSNKQIAAQLFISEETVKVHIRNLL 188

Query: 214 VKLDAVNRIQAIAK 227
            KL+  +R+ A   
Sbjct: 189 RKLNVHSRVAATVL 202


>gi|295839399|ref|ZP_06826332.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|295827445|gb|EDY46841.2| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 226

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 34/232 (14%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   ++A  FA+           R+           D   +   L     
Sbjct: 13  VDDHPMWRDAVARDLEAAGFAVVATAGDGPQAVRRASAAL-----PDVLVLDLNLPGL-- 65

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +      +                     V +         +   V+ G        
Sbjct: 66  -PGVEVCKRLVR--------------ERSGPHVLVLSASGEHQDVLEAVKSGATGYLLKS 110

Query: 134 FTSEFL--MLANEVIIEAHG---ACYQVITDFLELFKKRSSAA-------RNLTERETSC 181
            ++E L   +    + EA         V+ ++  L  + +  A         LT+RET  
Sbjct: 111 ASTEELIDAVRRTALGEAVFTPGLAGLVLGEYRRLAAESAPKAAGARPGTPRLTDRETEV 170

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 171 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 222


>gi|223041846|ref|ZP_03612034.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           202]
 gi|223017339|gb|EEF15762.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           202]
          Length = 209

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    +   V         ++                ++E      +     
Sbjct: 69  LRALRAKDVDARIVVLTVSDEQSDIVALMDAGVDGYLLKDSDTAELVENIQKAARGETVL 128

Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +   L   + ++     LT+RE   LQ    G ++++IA +L +S  TV  ++ +  
Sbjct: 129 SDAVRKHLLEHRPQADPLATLTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLL 188

Query: 214 VKLDAVNRIQAIA--KAIRFG 232
            KL+  +R+ A     A + G
Sbjct: 189 RKLNVHSRVAATVLYLAQQKG 209


>gi|218294966|ref|ZP_03495820.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218244874|gb|EED11398.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 217

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + A EV+++A     ++I DF    ++       L+ERE   L+L   GYT+ EIA +
Sbjct: 116 RRVHAGEVLLDAE-LAGRIIQDFRARKEQSLPLHAELSEREIQILKLVAQGYTNLEIAAE 174

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L LS  TV   L     KL   NR QA   AIR G 
Sbjct: 175 LQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210


>gi|163847477|ref|YP_001635521.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222525329|ref|YP_002569800.1| LuxR family transcriptional regulator [Chloroflexus sp. Y-400-fl]
 gi|163668766|gb|ABY35132.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449208|gb|ACM53474.1| transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl]
          Length = 487

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +ERE   L+L   G T+++IA  L +SV+TV  +L +   K+   +R +A   AIR G +
Sbjct: 8   SEREREILRLVATGATNQQIAIALNISVNTVKVHLRNIFAKIGVESRTEATVYAIRNGIV 67


>gi|119485367|ref|ZP_01619695.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119457123|gb|EAW38249.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 250

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EI+EKL ++V TV  ++ S   KL   +R QA  +A+R G
Sbjct: 188 PLTERELEVLELIVGGCSNAEISEKLYVTVGTVKTHVRSILNKLCVEDRTQAAVRALRSG 247

Query: 233 YI 234
            +
Sbjct: 248 LV 249


>gi|37523606|ref|NP_926983.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35214611|dbj|BAC91978.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 90

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           + +L++RE   L+L   G+T+E+IAE L +S  TV+ ++ +   K    NR++ +  A++
Sbjct: 8   SESLSDREMQILELVAQGHTNEDIAEVLEISKRTVDNHVSNILQKTKTKNRVELVRWALQ 67

Query: 231 FGYIC 235
           +G +C
Sbjct: 68  WGKVC 72


>gi|158314991|ref|YP_001507499.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158110396|gb|ABW12593.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 223

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 113 LPFAGIA-FPVRLGFHKN---GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
              AG + F ++                   +L              +  D       R 
Sbjct: 93  GLRAGASGFLLKDAAPGELVNAIRTVARGDAVLGPTAARRLVDRFAALPADSGSDRAARP 152

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
               +LTERE     L   GY++ EIA +L LS HTV  ++G    KLD  +RIQA+  A
Sbjct: 153 EIVHDLTEREREVFLLVARGYSNREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLA 212

Query: 229 IRFGYI 234
              G +
Sbjct: 213 YESGLV 218


>gi|323494233|ref|ZP_08099345.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323311396|gb|EGA64548.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 209

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             C Q     LE L +K       L++RE+  L+   +G  ++EIA+ L +SV TV  + 
Sbjct: 124 YLCPQASDRLLEQLNEKPQPKDDTLSKRESDVLKEIVNGSGNKEIADSLHISVRTVETHR 183

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL A +    +  A++ G +
Sbjct: 184 LRIKKKLGATSTAALVKLALQKGLV 208


>gi|296130675|ref|YP_003637925.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022490|gb|ADG75726.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 226

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERETSCLQLAGDGYT 190
               ++    +          +     +             R LT RE   L+L  +G +
Sbjct: 120 AGTSVVAPRVLRRMLDLFAPHLPAGAEDGDPQERTGPHPRLRGLTPRELDVLRLIAEGAS 179

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA +L +S  TV  ++G+   KL A +R+QA+  A   G +
Sbjct: 180 NAEIAAELVVSETTVKTHVGNVFAKLGARDRVQAVIIAYECGVV 223


>gi|319944660|ref|ZP_08018927.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
 gi|319742099|gb|EFV94519.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
          Length = 233

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +    +    +LT RE   +Q    G +++EIA +L ++  TV  ++ +   KL+  +R
Sbjct: 157 SIQSGTTPERVHLTAREREIMQCLARGESNKEIARRLDVAESTVKIHVQNILKKLNLSSR 216

Query: 222 IQAIAKAIRFGY 233
           +Q    A+  G 
Sbjct: 217 VQIAVYAVENGL 228


>gi|315648982|ref|ZP_07902076.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315275663|gb|EFU39017.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 217

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L L  +G +++EI E+L +S+ TV  ++ +  +K +  +R Q    A R G
Sbjct: 154 GLTEREKEVLLLIAEGRSNKEIGEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKG 213

Query: 233 YI 234
           ++
Sbjct: 214 WV 215


>gi|311900005|dbj|BAJ32413.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 223

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++       L   + + A GA     +    L            +    A  
Sbjct: 97  LRAGASGFLLKDVPAEELVQAIRVVADGAAMLAPSVTRRLLDMYATKLPSGDEAPPQALT 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA +L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 VLTEREVEVLRLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|296331918|ref|ZP_06874383.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673530|ref|YP_003865202.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150996|gb|EFG91880.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411774|gb|ADM36893.1| two-component response regulator (paired with YfiJ) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 220

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LTERE   L   G G  ++EIAEKL ++  TV  ++ +   KL   +R QA   ++R+G
Sbjct: 158 LTEREMEVLAELGYGLNNKEIAEKLFITEGTVKNHVSNIISKLSVRDRTQAAIYSVRYG 216


>gi|226311708|ref|YP_002771602.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094656|dbj|BAH43098.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 215

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
           ++ +    L   +E+  E                +   +    LT RE   +   G G T
Sbjct: 113 WINYLHALLGEDSELTREMATRLMYRFRQEEATDEMVPAV---LTPREREIVMYVGAGKT 169

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EI+E L ++ +TV  +L +   KL   NR+Q  A A+R   +
Sbjct: 170 NREISEALIIAENTVKNHLKNILEKLQLANRVQLAAYAVRHHLV 213


>gi|56964425|ref|YP_176156.1| transcriptional regulator of spore coat protein [Bacillus clausii
           KSM-K16]
 gi|56910668|dbj|BAD65195.1| transcriptional regulator of spore coat protein [Bacillus clausii
           KSM-K16]
          Length = 74

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE    +L     T++EIA  L +S  TV  ++ +   KL    R QA+ + I
Sbjct: 8   PKPLLTKREREVFELLVQDQTTKEIANHLFISEKTVRNHISNTMQKLGVKGRSQAVIELI 67

Query: 230 RFG 232
           R G
Sbjct: 68  RLG 70


>gi|37519948|ref|NP_923325.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210940|dbj|BAC88320.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 212

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVI-----TDFLELFKKRSSAARNLTERETSCLQ 183
            G   +  + +     +          V        +L    +       LT RE   L 
Sbjct: 100 AGIDGYCVKGIEPEQLLQAILQVRSGHVWWDGRVAAYLRSGPEPERRDYQLTPRERQVLG 159

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L  +G ++++I  +L +SV TV  ++ +   KL A +R QA   A++ G 
Sbjct: 160 LLANGLSNQQIGRQLFISVGTVQVHVHTILRKLGARDRTQAAILALQEGL 209


>gi|299535065|ref|ZP_07048391.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1]
 gi|298729561|gb|EFI70110.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1]
          Length = 376

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 75/228 (32%), Gaps = 24/228 (10%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           SS  Q+L+  L   +     +    Y        P   Q    +         +   L  
Sbjct: 168 SSGYQDLALILKKCEEYFSYKRCVFYAY-----VPWSNQFYGVIGAELPKVQSMKGELTG 222

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLGFHKN 129
                      S   PI          +++                + I  P+       
Sbjct: 223 ENT------ILSSRKPIY---------LKNPKNYVKEEHIQLFNLSSIIFIPILCEDQLF 267

Query: 130 GYVIFT--SEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAG 186
           G++ F    E      E +        ++        +K   +   +LTERE+  L L  
Sbjct: 268 GWLTFDQLGEEFDCTKEELTLLEEVGKRLGLFLSRKGEKVEKNTVLHLTERESMILGLLA 327

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +GY +++IA  L LS HTV  Y+ S   KL A NR Q +A A R G +
Sbjct: 328 EGYDNKKIAGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 375


>gi|302553186|ref|ZP_07305528.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470804|gb|EFL33897.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 3/102 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++  +            +     +   +       LT+RE   + L   G ++ 
Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPMLPGTATQPQHQEL---ERLTDREREVMVLVAQGLSNG 175

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L LS  TV  ++G    KL   +R+Q +  A   G +
Sbjct: 176 EIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|163848683|ref|YP_001636727.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|163669972|gb|ABY36338.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
          Length = 890

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           ++++    S     +     +    G    + L   +    + T    +  ++ + E   
Sbjct: 754 LEQKAGNPSVAMNMLGRALEIGKANGY-VRIFLEEGEEMRHLLTQIHRLRRDDFVAELLA 812

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A  +           +SS    LTERE   L+L  +G ++ EIAEKL LSV TV  ++  
Sbjct: 813 AFGKPAQVV------QSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKH 866

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  +R++A   A   G +
Sbjct: 867 IYGKLNVDDRVKAAGMARELGLL 889


>gi|152966552|ref|YP_001362336.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361069|gb|ABS04072.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 211

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +R+     LT RE   L+L  DG ++ EIA  L LS  TV  Y+     KLD  +R+QA
Sbjct: 141 PQRAQEGSALTPRELQVLRLIADGLSNVEIAATLSLSPETVKTYVSRLLTKLDLRDRVQA 200

Query: 225 IAKAIRFGYI 234
           +  A R G +
Sbjct: 201 VVYAYRHGLV 210


>gi|291440146|ref|ZP_06579536.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343041|gb|EFE69997.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 201

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 151 GACYQVITDFLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           G    V+ ++  L  + +  A+         LTERET  L+L   G + ++IAE+L +S 
Sbjct: 108 GLAGLVLGEYRRLASEPAGPAQGDDGSKAPRLTERETEVLRLVAKGLSYKQIAERLVISH 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 168 RTVQNHVQNTLGKLQLHNRVELVRYAIERGL 198


>gi|293364262|ref|ZP_06610988.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307702507|ref|ZP_07639461.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|291317108|gb|EFE57535.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623919|gb|EFO02902.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
          Length = 199

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 5/155 (3%)

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----L 139
            P+    +  E  +++  ++   +    L    +              +           
Sbjct: 45  EPVDIAILDVEMPVKTGLEVLEWIRAEKLETKVVVVTTFKRPGYFERAVKAGVDAYVLKE 104

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
               +++   H           EL +   +    LTE+E + L+    G +++EIA++L 
Sbjct: 105 RSIADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLY 164

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 165 LSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|260777662|ref|ZP_05886555.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605675|gb|EEX31960.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 210

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 11/138 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156
              L         +   V         ++              + ++E   +  Q     
Sbjct: 68  LNALRADECDATIVILTVSDSPGDIEAIVKAGADGYLLKDTEPDELVELLKSSLQGNKAY 127

Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +  +L   +  S    +LT+RE   L+    GY +++IA+ L +S  TV  ++ S  
Sbjct: 128 SKEVAKYLAERENISDVFDDLTDREMQILREVAKGYRNKQIADSLFISESTVKVHMKSLL 187

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   +R  A    +  
Sbjct: 188 KKLKVPSRTAATVLYLER 205


>gi|182415045|ref|YP_001820111.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842259|gb|ACB76511.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 209

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       S  Q    L         + +       +    I       +  E+ ++   
Sbjct: 58  LDLRMQGMSGVQTLHALRAEFGAVRVLVYSNYARGEEVYQAIKAGAAGFVVKEMALDRLL 117

Query: 152 ACYQVITD---------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
              +V+              + ++  +    L+ RE   L+L   G +++EIA +LGL V
Sbjct: 118 EAIRVVNSGGQYIPEQVAARIAERLLA---GLSPREMEVLKLLAKGLSNKEIATQLGLVV 174

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KL   +R QA+  A++ G I
Sbjct: 175 GTIKIYVANIFNKLGVSDRTQALVTAVKRGII 206


>gi|322386960|ref|ZP_08060584.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321269242|gb|EFX52178.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 210

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|298250780|ref|ZP_06974584.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548784|gb|EFH82651.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 223

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                 R +    L+ RE   L+L  +G ++ +IAE+L L+  TV  ++ +   KL   N
Sbjct: 150 RSATPARPAQEETLSPREIEILKLLAEGASNRKIAEQLVLAEGTVKNHVSNILSKLHTGN 209

Query: 221 RIQAIAKAIRFGYI 234
           R QA   A     +
Sbjct: 210 RTQAAHLARERKLL 223


>gi|254385060|ref|ZP_05000394.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343939|gb|EDX24905.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 224

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L                +   
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEDSVPNTLG 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|121053812|gb|ABM47010.1| response regulator [Amycolatopsis orientalis]
          Length = 222

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 155 QVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           +V+   L      +       NLT+RE   L L   G++++EIA +L +S  TV +++  
Sbjct: 138 RVLGAALTSAPASAPPPEDDANLTKREAHVLTLIAAGHSNKEIAAELFVSETTVKSHINR 197

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              K  + +R QA+  A + GY+
Sbjct: 198 IFAKTGSRDRAQAVRYAYQAGYV 220


>gi|83955493|ref|ZP_00964124.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83840137|gb|EAP79312.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 220

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + + +A  +LTERE + L     G +++E+A+ L +SV TV  +  +   KL   +    
Sbjct: 144 EPKDAARESLTEREQTILLQLAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGL 203

Query: 225 IAKAIRFGYI 234
              A+  G +
Sbjct: 204 TRYAMEHGVL 213


>gi|186680836|ref|YP_001864032.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463288|gb|ACC79089.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 224

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G +++EIAE L ++  TV  ++ +   KL+  +R QA   AI+ G
Sbjct: 156 PLTKREQEILALVAAGKSNQEIAEILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAIQKG 215

Query: 233 YI 234
            +
Sbjct: 216 LV 217


>gi|322418556|ref|YP_004197779.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320124943|gb|ADW12503.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 224

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   ++L  +G +S  IAE L +S  TV  +  +   KLD  +RI+ +  A R G 
Sbjct: 158 LSPREQQVMRLVAEGGSSRSIAEALQVSAKTVENHRTNLMKKLDVHSRIELVRYAARLGL 217

Query: 234 I 234
           I
Sbjct: 218 I 218


>gi|256390165|ref|YP_003111729.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356391|gb|ACU69888.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 221

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LT RE   L L   G ++ EIA +L +S HTV  ++ +  +KL   +R+ A+ 
Sbjct: 148 PSARLDALTPRERETLLLMARGASNAEIAARLFVSEHTVKTHVSNILMKLGLRDRVHAVI 207

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 208 FAYDSGLV 215


>gi|90739296|gb|ABD97851.1| AvsR [Agrobacterium vitis]
          Length = 246

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 12/234 (5%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             + ++S +  +  L+ +Q+                   +  +          +   + +
Sbjct: 13  WLETATSAK-WTDFLNRLQSSYNLSGCLYMDAFITSAGAQVHRYGHTFDKQVKEPILMLD 71

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
             +       L   +  + P+    +    V E    L  +L    LP   +++P+    
Sbjct: 72  APVLHN---VLSQLSRAMEPVDMHDL--AHVSEEGLLLRSKLRDLPLPRQAVSYPLLSID 126

Query: 127 HKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFL-ELFKKRSSAARNLTERETS 180
            +   +   S                + H    +     +        +    LT RE  
Sbjct: 127 GRGAILAIASNACEQEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGADIAGTPPLTRREQE 186

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+    G +  E A  LG+S  TV  ++ +A +KLDAV+  QA+ KA++ G I
Sbjct: 187 TLRWTAAGKSYWETAVILGISERTVRYFMANARIKLDAVSNTQAVVKALQRGLI 240


>gi|332162558|ref|YP_004299135.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666788|gb|ADZ43432.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 202

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    I   V         +I              E+++E      +        
Sbjct: 65  LRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDA 124

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +T +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 125 VTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 184

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A    +  
Sbjct: 185 NVRSRVAATIMYLEN 199


>gi|320011002|gb|ADW05852.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 226

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                            +     LT RE   L+L   G +++EIA +L L+  TV  ++G
Sbjct: 138 LIADFARRKPAAPSGGPALRLNGLTPREREVLELIARGLSNQEIAARLVLAEQTVKTHIG 197

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R QA+  A   G +
Sbjct: 198 RVLAKLGLRDRAQAVIFAYESGLV 221


>gi|239980581|ref|ZP_04703105.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452439|ref|ZP_06591829.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355388|gb|EFE82290.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 228

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183
                       ++A+   + A G   ++IT+F  L ++  +        LTERET  L 
Sbjct: 110 DASARQLAEGVRVVASGDALLAPGVTRRLITEFSRLAERPQAPGPGQYGELTERETEVLV 169

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G ++ EIA++L ++  TV  ++    VKL   +R QA   A   G +
Sbjct: 170 QIAQGLSNAEIADRLFVAESTVKTHVSRILVKLSLRDRTQAAVFAYEAGLV 220


>gi|297153818|gb|ADI03530.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 219

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  DG+++ EIA  L +S  TV  ++     KLD  +R+QA+  A R G
Sbjct: 157 PLTPRELEVLRLIADGFSNSEIAAALQISPETVKTFVSRILTKLDLRDRVQAVVYAYRQG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|297567827|ref|YP_003686798.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946]
 gi|296852276|gb|ADH65290.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946]
          Length = 206

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+L  +G +++EIA++LG+S+ TV  ++     KL A +R QA  KA+R G
Sbjct: 145 QLSPRELEVLRLIAEGLSNKEIAQRLGISLSTVKTHIEELLAKLSASDRTQAAIKAVRQG 204

Query: 233 YI 234
            +
Sbjct: 205 LL 206


>gi|289523038|ref|ZP_06439892.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503581|gb|EFD24745.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 274

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L ++ ++   +LT RE   L     G++++ IA+ + LS  TV  ++     KLD  +R
Sbjct: 187 SLIEEDTAQLYHLTPREKEVLYWLSQGFSNQNIAKIMFLSEKTVKNHVSRILKKLDFPDR 246

Query: 222 IQAIAKAIRFGY 233
            QA   A + G 
Sbjct: 247 TQAAVFAWKAGL 258


>gi|256421144|ref|YP_003121797.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036052|gb|ACU59596.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 210

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L+ERE   ++   +G  ++ I+  L +S HTV  +  +   KL+     + I  AI  
Sbjct: 148 QELSEREKEIIKCLAEGMNTKAISSSLYISEHTVKTHRRNIMHKLNVKTSAELIRLAIDK 207

Query: 232 GYI 234
           G I
Sbjct: 208 GII 210


>gi|212690554|ref|ZP_03298682.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855]
 gi|212666903|gb|EEB27475.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855]
          Length = 231

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                C ++        +K+     +LT  E   L+L   G T++EIA +  LSV+TV  
Sbjct: 138 RLQYICTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVMT 197

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   KL+  N  +A   A+R G +
Sbjct: 198 HRKNIFRKLEVNNVYEATKYALRAGIV 224


>gi|119718601|ref|YP_925566.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119539262|gb|ABL83879.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 1006

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 7/165 (4%)

Query: 77   LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
            +   ++  L + W +  +   +++              F       R+     G +  T 
Sbjct: 841  MKRLDAETLRVRWLAGIDAPPLDALVDTWRDAAVLFEDFGHAYELARVRTALAGILRATG 900

Query: 137  E---FLMLANEVIIEAHGACYQVITDFLE----LFKKRSSAARNLTERETSCLQLAGDGY 189
            +      L +     AH    + + D L        +  S    LT RE+  LQL   G 
Sbjct: 901  DLAGGRELGDLARASAHQLGARPLLDELRSIGSAPARTESVPDALTPRESEVLQLVAQGR 960

Query: 190  TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIA++L +S  TV+ ++ +   KLDA  R +A A A R G I
Sbjct: 961  SNGEIAKQLFISAKTVSVHVSNILGKLDASGRTEAAAIARRRGLI 1005


>gi|298249284|ref|ZP_06973088.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547288|gb|EFH81155.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 216

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 41/83 (49%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+ +         ++   L+ERE   L+L  +G ++  IA++L LS  TV +++ 
Sbjct: 131 HIAARVVQELDGASHPDMASFAQLSEREREVLRLIAEGLSNAAIADRLVLSEKTVKSHVR 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL  V+R QA   A R G 
Sbjct: 191 NILGKLHLVDRTQAAIFAWRQGL 213


>gi|51894297|ref|YP_076988.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857986|dbj|BAD42144.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 221

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 38/78 (48%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           ++       K       LTERET  L+L   G ++++IAEKL +   TV  ++ S   KL
Sbjct: 144 LSSMAASRPKARPLVEPLTERETEVLRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKL 203

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A +R+ AI  A     +
Sbjct: 204 GARDRVHAILLAQELNLV 221


>gi|148654624|ref|YP_001274829.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148566734|gb|ABQ88879.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 208

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)

Query: 138 FLMLANEVIIEAHGACYQ--------VITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                 E ++EA     Q        ++   L+    RS  +  LTERE   L+L  +G 
Sbjct: 106 EKDSQPEQLLEAVRGAAQGKAIFEPALMQRILQAQTMRS--SDALTEREGEVLKLLAEGL 163

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+ EIA +L +   TV  ++ S   KL   +R QA   A+R G++
Sbjct: 164 TNAEIAARLSVGEETVKTHVASILRKLGLAHRTQAAIYALRHGWV 208


>gi|328881486|emb|CCA54725.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 214

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178
           +R G     Y     + L  A   +   H      +   L   +     +     LTERE
Sbjct: 98  LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDSHGGTGRGSTLTERE 157

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212


>gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 223

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 39/96 (40%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +  A    +E      Q      E   + + A   LT  E    +    G T+++I EKL
Sbjct: 119 IERARRTQLEILRLIQQQTQAKAEAAPRPTLADLPLTPAEERVFREVIRGLTNKQIGEKL 178

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S  TV  +L +   KL   NR Q +  A   GYI
Sbjct: 179 FISPRTVQTHLTNILSKLSLENRSQLVRFAYERGYI 214


>gi|226309987|ref|YP_002769881.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092935|dbj|BAH41377.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 218

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L L   G++++EIAE+L +SV TV ++      KL    R   +  AI+ 
Sbjct: 153 DILTDREKEVLVLIAKGFSNKEIAEQLTVSVKTVESHKAHIMEKLHLRTRPDLVRYAIKK 212

Query: 232 GYI 234
           G++
Sbjct: 213 GWL 215


>gi|255598987|ref|XP_002537125.1| conserved hypothetical protein [Ricinus communis]
 gi|223517394|gb|EEF25258.1| conserved hypothetical protein [Ricinus communis]
          Length = 277

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----------KRSSAARNLTERETS 180
            V+F      +  +           +    +++             R+   + L++RE  
Sbjct: 160 MVMFGRLSSPVNAQTAHLLELLMPHLHCAIVKVTANKCPSVLSTTARNGRIKPLSKRELE 219

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+    G T+ EI   + +S  T+  ++ +   KLD  NR QA +KA++ G I
Sbjct: 220 VLEWLQAGKTNWEIGNIMQVSPLTIKNHVQNILRKLDVENRSQAASKALKLGLI 273


>gi|313837084|gb|EFS74798.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314927887|gb|EFS91718.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971857|gb|EFT15955.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907346|gb|EGG27112.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 210

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 46/109 (42%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + +   A G           L  +  S   +LT RE   L+ +
Sbjct: 101 AGATGYLLKDAPAEELLSAIHRSARGEGALAPAVATRLMARMRSPQTSLTARELDVLEAS 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +IA+ L +S  TV  +L     KL   +R  A+AKA   G I
Sbjct: 161 AGGLSNAQIAQSLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGLI 209


>gi|313679613|ref|YP_004057352.1| two component LuxR family transcriptional regulator [Oceanithermus
           profundus DSM 14977]
 gi|313152328|gb|ADR36179.1| two component transcriptional regulator, LuxR family [Oceanithermus
           profundus DSM 14977]
          Length = 219

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 46/96 (47%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   EV+++A  A   +     +      +   +LT+RE   L+L   G T++EIA++
Sbjct: 119 RRVNEGEVLLDAELAEQIIHDFRAKRDVLPQAHHADLTDREVQILRLLAQGATNQEIADE 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LG+S  TV   L     KL   NR QA   AIR G 
Sbjct: 179 LGISEKTVRNRLSEIFSKLHLNNRTQAALYAIREGL 214


>gi|262282221|ref|ZP_06059990.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262262675|gb|EEY81372.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 210

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 142 HDDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201

Query: 231 FGYI 234
              +
Sbjct: 202 HHLV 205


>gi|229055057|ref|ZP_04195489.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603]
 gi|228721329|gb|EEL72853.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603]
          Length = 214

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +        + LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R
Sbjct: 139 AVECNPPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDR 198

Query: 222 IQAIAKAIRFG 232
            QA   A+R+G
Sbjct: 199 TQAAIYAVRYG 209


>gi|221067422|ref|ZP_03543527.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220712445|gb|EED67813.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 254

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L+L   G  + EI + + +S  TV+ ++ +   K+    R QA+  A+  
Sbjct: 192 EKLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLK 251

Query: 232 GYI 234
           G I
Sbjct: 252 GII 254


>gi|255532850|ref|YP_003093222.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345834|gb|ACU05160.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 206

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 141 LANEVIIEAHGACYQ--VITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAE 196
              E ++EA  A  +  V          R  A   L  T RE   L L  +G T+ EIAE
Sbjct: 109 ATKEELLEAINAVSKGKVYYSQEAFSSLRIPAPDQLLITRREKEVLLLIAEGLTNAEIAE 168

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KL +S+ TVN +  S   K +  N    I KAI+ G I
Sbjct: 169 KLFISIPTVNTHRKSLIEKFNVKNTAMLIGKAIKLGLI 206


>gi|229131218|ref|ZP_04260124.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196]
 gi|228652209|gb|EEL08140.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196]
          Length = 214

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +        + LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R
Sbjct: 139 AVECNPPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDR 198

Query: 222 IQAIAKAIRFG 232
            QA   A+R+G
Sbjct: 199 TQAAIYAVRYG 209


>gi|88706284|ref|ZP_01103990.1| two-component system response regulator [Congregibacter litoralis
           KT71]
 gi|88699435|gb|EAQ96548.1| two-component system response regulator [Congregibacter litoralis
           KT71]
          Length = 222

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 7/150 (4%)

Query: 92  IQEETVIESSGQLSVRLEG-----GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
           +     +    ++   +        ++ F G+  P  L              L  A +++
Sbjct: 70  LDVSMPLAGGAEIIHDVRRWSPDTRIVIFTGVTSPSVLAGILEAGADAIFSKLSPARDML 129

Query: 147 IEA--HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +        + +   L    ++      LT RE   L +   G +++EIA++L +S  T
Sbjct: 130 AKLPLILMGERYVAPELTDIIRKGQQGETLTGRERQVLNMIVMGKSNKEIAQELNISPKT 189

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  + GS  +KL+  +  Q +A+A++ G I
Sbjct: 190 VEKHRGSVMLKLEVHSVAQLMARALKDGLI 219


>gi|282863833|ref|ZP_06272891.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561534|gb|EFB67078.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 219

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTS 191
           +      + A   +++       V      +     +A    LT RE   L+L  DG ++
Sbjct: 116 LLQGIRTVAAGAALLDPEVTRQLVGRYAARIRPTGDAARDIPLTPRELEVLRLIADGLSN 175

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA  L +S  TV  ++     KL   +R+QA+  A R G +
Sbjct: 176 NEIAAALVISRETVKTFVSRILTKLGLRDRVQAVIYAYRQGLV 218


>gi|260914572|ref|ZP_05921040.1| nitrate/nitrite response regulator protein NarL [Pasteurella
           dagmatis ATCC 43325]
 gi|260631363|gb|EEX49546.1| nitrate/nitrite response regulator protein NarL [Pasteurella
           dagmatis ATCC 43325]
          Length = 209

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I              + ++       Q        
Sbjct: 72  LRSEGIDARILILTVSDSKNDIFTLIDAGADGYLLKDTEPDTLLGQIKRISQGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L   +  +    +LT+RE   L+L   G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNALIERQSATDPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A       
Sbjct: 192 NVHSRVAATVLYFEH 206


>gi|154251588|ref|YP_001412412.1| two component LuxR family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155538|gb|ABS62755.1| two component transcriptional regulator, LuxR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 213

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177
                +GYV+ ++    L   V               + +   L    + S     LT R
Sbjct: 96  TNAGASGYVLKSASKEDLLRAVRAVHAGGGYLQAEVTKPLLRRLAQDARTSGQKATLTSR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+   DG +++ IA+ L ++  TV A+L S   KL A +R  A+A ++R   I
Sbjct: 156 ELQVLECLADGQSNKMIAQTLSITEDTVKAHLKSLYEKLGASDRAHAVAISLRQQLI 212


>gi|254417388|ref|ZP_05031130.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420]
 gi|196175823|gb|EDX70845.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420]
          Length = 94

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +   +S  + +L++RE   + L   G T++EIA+ L +S  TV+ ++ +   K    NR+
Sbjct: 1   MAGGKSDKSVSLSDRELQIVDLVAAGLTNQEIAQDLEISKRTVDNHISNILQKTHTDNRV 60

Query: 223 QAIAKAIRFGYIC 235
             +  A+++G +C
Sbjct: 61  ALVRWALQWGKVC 73


>gi|302559284|ref|ZP_07311626.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302476902|gb|EFL39995.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 223

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q +  A   
Sbjct: 155 ERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|222526625|ref|YP_002571096.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|222450504|gb|ACM54770.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus sp. Y-400-fl]
          Length = 878

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           ++++    S     +     +    G    + L   +    + T    +  ++ + E   
Sbjct: 742 LEQKAGNPSVAMNMLGRALEIGKANGY-VRIFLEEGEEMRHLLTQIHRLRRDDFVAELLA 800

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A  +           +SS    LTERE   L+L  +G ++ EIAEKL LSV TV  ++  
Sbjct: 801 AFGKPAQVV------QSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKH 854

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  +R++A   A   G +
Sbjct: 855 IYGKLNVDDRVKAAGMARELGLL 877


>gi|315121859|ref|YP_004062348.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495261|gb|ADR51860.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 246

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 16/215 (7%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
           R++ +   + A +F L   +    F  ++       ++  D      +  +    + L  
Sbjct: 48  RMYALTEYVGASHFLLVRWDL---FQEQKLDSVVSSDWPFDLVRCMTLSEKDKYYNVLQR 104

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                 P+         + E+    S    G    +  + F V  G  + G ++   +  
Sbjct: 105 PAELFCPVF------HILPENIDLPS----GMDNRYCALTFDV--GRIRIGLMLLFPKGR 152

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +++ + + E           F             LT RE  CL    +G TS+EIA  LG
Sbjct: 153 IVSQDRLWEIGLLAAYQANMFKNYNVHLGKDFE-LTGREIECLTWISEGKTSDEIAVILG 211

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S +T+N Y+ S   K     R  AIA A+R   +
Sbjct: 212 ISRNTINNYIASIMRKTATKTRSGAIAYAVRNNIV 246


>gi|294085444|ref|YP_003552204.1| LuxR family two component transcriptional regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665019|gb|ADE40120.1| two component transcriptional regulator, LuxR family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 207

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 55/112 (49%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +RLG         TS+ L+ A  ++          + + +++ K  ++    L++RE   
Sbjct: 95  LRLGAAGFLPYSMTSDALLSALRLMASGEIFIPVSVAEHVQIAKPSTAKDTFLSKREREV 154

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L     G+++++IAE++GLS  T+  +L S   KL A NR  A  +AI  G 
Sbjct: 155 LDGLLSGHSNKQIAERIGLSEVTIKYHLKSLRSKLGARNRTHAALRAIELGI 206


>gi|56964850|ref|YP_176581.1| two-component response regulator of extracellular degradative
           enzyme [Bacillus clausii KSM-K16]
 gi|56911093|dbj|BAD65620.1| two-component response regulator of extracellular degradative
           enzyme [Bacillus clausii KSM-K16]
          Length = 235

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL  DG  +  I E L +S  TV  ++ +   K++  +R QA+ ++I
Sbjct: 168 PLHILTRRECEVLQLMTDGQNNRAIGESLYISEKTVKNHVSNILQKMNVNDRTQAVVESI 227

Query: 230 RFGYI 234
           + GY+
Sbjct: 228 KKGYV 232


>gi|239944389|ref|ZP_04696326.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239990844|ref|ZP_04711508.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291447858|ref|ZP_06587248.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350805|gb|EFE77709.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 217

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARN----LTERETS 180
               GY++  +    L   V   A G           L  + R+ AA      L+ RE  
Sbjct: 103 AGATGYLLKDAPRDELFAAVRAAADGRSTLSPAVASRLMTRVRTPAADPAGTTLSARERE 162

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L   G T+ EIA +L +S  TV  +L     KL A +R  A+A     G +
Sbjct: 163 VLVLVARGTTNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVAVGYDRGIL 216


>gi|119963933|ref|YP_949838.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119950792|gb|ABM09703.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 230

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R      LT RET  L    +G ++ EIA K  LS  TV  ++     KL   +R+Q +
Sbjct: 155 HRDPLLDELTPRETEILTTIAEGLSNAEIAHKFFLSEATVKTHVRRILSKLQLRDRVQVV 214

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 215 VYAYETGLV 223


>gi|322513935|ref|ZP_08067011.1| nitrate/nitrite response regulator protein NarL [Actinobacillus
           ureae ATCC 25976]
 gi|322120230|gb|EFX92185.1| nitrate/nitrite response regulator protein NarL [Actinobacillus
           ureae ATCC 25976]
          Length = 209

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 11/134 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         ++                ++E      +     
Sbjct: 69  LRSLRTHGVDSRIIVLTVSDEQSDIFALMDAGVDGYLLKDSDTADLVENIRKAAKGEMVL 128

Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +   L   +  +     LT+RE   LQ    G ++++IA +L +S  TV  ++ +  
Sbjct: 129 SETVQQHLLDRRPENDPLSVLTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLL 188

Query: 214 VKLDAVNRIQAIAK 227
            KL+  +R+ A   
Sbjct: 189 RKLNVHSRVAATVL 202


>gi|271965569|ref|YP_003339765.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508744|gb|ACZ87022.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------AARNLTE 176
           L    +G+++  +    +   V     G      +    L    +            LT+
Sbjct: 96  LRAGASGFLLKDAPAEEIVAAVRTVHEGDAVIAPSTTRRLLDHVAPTLPLPADPPVPLTD 155

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+    G T+ EIA  L LS  TV  ++G    KL   +R+QA+  A   G I
Sbjct: 156 REREVLRHIAQGETNAEIAGCLFLSEGTVKTHVGRILAKLQLRDRVQAVIWAYEHGQI 213


>gi|256394564|ref|YP_003116128.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256360790|gb|ACU74287.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 201

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L        A+ +LT RE   L L   G ++ EIA +L +S  TV  ++ +   K+  
Sbjct: 126 AILLAAAVEVPASADLTPREAEVLTLIARGKSNTEIAGELFVSAATVKTHINNLFAKIGV 185

Query: 219 VNRIQAIAKAIRFGY 233
            +R QA+  A+R G 
Sbjct: 186 RDRAQAVRYALRRGL 200


>gi|166366585|ref|YP_001658858.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166088958|dbj|BAG03666.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 237

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L   G ++ EIA++L +++ TV  ++ +   KL   +R QA   A+R G
Sbjct: 175 PLTAREREILDLIVAGCSNAEIAKRLYITIGTVKTHVRNVLNKLSVDDRTQAAVLALRSG 234

Query: 233 YI 234
            +
Sbjct: 235 LV 236


>gi|296285195|ref|ZP_06863193.1| LuxR family transcriptional regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 186

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 2/173 (1%)

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
           +         D      +  ++   W  I E   +    +  + +        G   P  
Sbjct: 2   VYIAFDLAGQDPVRRACDKTIIGFAWDWIDELVPLTRGDRQMLNVGRECGIGNGYTVPRH 61

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLELF-KKRSSAARNLTERETSC 181
           L     G   F               A       ++  L L  +K      +LT+R+  C
Sbjct: 62  LPGIGRGTCTFAVRPERELPRRRFAVAEMIGTLALSCALGLSSEKFDEKVPSLTDRQREC 121

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G T+ E A  L +S  TV  +L  A  +     +   +  A+  G I
Sbjct: 122 LLWVARGKTAAETAMILEISTETVIQHLKMARERYQVHCKQSLVVAALFDGLI 174


>gi|183601417|ref|ZP_02962787.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191083|ref|YP_002968477.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196489|ref|YP_002970044.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219023|gb|EDT89664.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249475|gb|ACS46415.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251043|gb|ACS47982.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794072|gb|ADG33607.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 226

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +        LTERE   L     G +++EIA+KL +S+ TV  ++     K++A +R+
Sbjct: 155 AAEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRV 214

Query: 223 QAIAKAIRFGYI 234
           QA+  A     +
Sbjct: 215 QAVVFAYENHLV 226


>gi|169826466|ref|YP_001696624.1| hypothetical protein Bsph_0878 [Lysinibacillus sphaericus C3-41]
 gi|168990954|gb|ACA38494.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 377

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169
               + I  P+       G++ F    E        ++       ++        +K   
Sbjct: 251 FNLSSIIFIPIIQQDQLFGWLTFDQLGEEFDCTKSELLLLEEVGKRLGLFLSRKGEKVEK 310

Query: 170 AAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
               +LTERE+  L L  +GY +++I   L LS HTV  Y+ S   KL A NR Q +A A
Sbjct: 311 CTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASA 370

Query: 229 IRFGYI 234
            R G +
Sbjct: 371 FRLGLL 376


>gi|297191947|ref|ZP_06909345.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723328|gb|EDY67236.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181
               GY++  +    L   V   A G               +    +  +  L+ RE   
Sbjct: 105 AGATGYLLKDAPREELFTAVRAAAQGRTVLSPAVASRLVSHVRAPAAPGSEGLSAREREV 164

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G ++  IA +L +S  TV  +L     KL A +R  A+A A   G +
Sbjct: 165 LELVAKGTSNRAIARELFISEATVKTHLTHVFGKLGAKDRAAAVALAYERGIL 217


>gi|172037420|ref|YP_001803921.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698874|gb|ACB51855.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 244

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                  +       + A +   E          + L+   ++   + +LT +E   L+L
Sbjct: 134 PAVARVVLEQMQFDQLSATQSHAEQEVINDTRAIEALDADTQKMVDSSSLTPKELEVLEL 193

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + +IAE L ++V TV  ++ S   KL A +R QA  +A+R G +
Sbjct: 194 IVAGCNNAQIAEALFVTVGTVKTHVRSILNKLCANDRTQAAVRALRSGLV 243


>gi|38233071|ref|NP_938838.1| response regulator [Corynebacterium diphtheriae NCTC 13129]
 gi|5639947|gb|AAD45905.1|AF161328_2 response regulator CstA [Corynebacterium diphtheriae]
 gi|38199330|emb|CAE48963.1| Response regulator [Corynebacterium diphtheriae]
          Length = 233

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G ++ EIAE+L +S+ TV  ++     K  + +R+ A+  A   
Sbjct: 160 DPLTPREQEILLLIALGKSNTEIAEELFISLPTVKTHVSKVLSKTGSRDRVHAVLFAFSR 219

Query: 232 GYI 234
           G +
Sbjct: 220 GLV 222


>gi|116620874|ref|YP_823030.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224036|gb|ABJ82745.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 247

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            +    +    R      L++RE   + L   G+ ++E+AEK+ +S  TV  +L +   K
Sbjct: 166 AMAAPSQAPPTRERERSPLSQREREIVALVAQGFKNKEMAEKMFISEQTVKNHLHNIFDK 225

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L   +R++    AI    
Sbjct: 226 LGVSDRLELALYAIHNNL 243


>gi|320011566|gb|ADW06416.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 214

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178
           +R G     Y     + L  A   +   H      +   L   +     +     LTERE
Sbjct: 98  LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDTGNGTGRGSTLTERE 157

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211


>gi|298489796|ref|YP_003719973.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298231714|gb|ADI62850.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 218

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
              +   LT RE   L+L  +G ++ EIA  L +S  TV  ++ +   +L+  +R QA  
Sbjct: 148 IPPSLVELTPREKQVLRLIANGASNREIAHTLYISEGTVKNHVTNILSRLNLRDRTQAAI 207

Query: 227 KA 228
            A
Sbjct: 208 LA 209


>gi|311740276|ref|ZP_07714107.1| LuxR family DNA-binding response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304659|gb|EFQ80731.1| LuxR family DNA-binding response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 205

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    L   V+  A             L ++      +L+ RE   L+  
Sbjct: 97  AGAMGYLLKDSPEQALHEAVLNTAAHRRTLAPEVVDLLAQRVGRPQESLSTRELEILRAL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +++E+A++L +S  TV  +L     KL    R  A+  A     I
Sbjct: 157 STGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205


>gi|16761903|ref|NP_457520.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143390|ref|NP_806732.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213161150|ref|ZP_03346860.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424839|ref|ZP_03357589.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646194|ref|ZP_03376247.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213853096|ref|ZP_03382628.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25512537|pir||AE0882 LysR-family transcription regulator STY3293 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504205|emb|CAD02957.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139024|gb|AAO70592.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 227

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D  L   
Sbjct: 18  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPLLP-- 69

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 70  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|330470343|ref|YP_004408086.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813314|gb|AEB47486.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 213

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L   V   A G           L  + R+ A   L++RE   L L
Sbjct: 99  AGATGYLLKDAPRDELVRAVRAAARGESVLSPAVAGRLMGRLRAPAEEPLSQRELEVLTL 158

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T+ E A +L +S  TV  +L     KL   +R  A+A A   G +
Sbjct: 159 VARGSTNREAAAQLFISEATVKTHLLHVYAKLGVNDRAAAVAVAYDRGLL 208


>gi|257054106|ref|YP_003131938.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256583978|gb|ACU95111.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 221

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 21/173 (12%)

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-------PVRL--GFHKNGYVI 133
              P     +     +      +  +       A +          +R   G    GY+ 
Sbjct: 48  TRKPCDVVLMDLRMPVLDGVAATREIRNRHPEVAVLVLTTYSDDDSIRDALGAGAQGYLT 107

Query: 134 FTSEFLMLANEVIIEAHGACYQ--VITDFL--ELFKKRSSAARN--------LTERETSC 181
             +    +   +     G       ++  L   L ++R   +          LT RE   
Sbjct: 108 KDAGRAEIHAALRAAVTGQATFTTAVSRRLVTALTEQRPRPSEPTPDPSATTLTAREREI 167

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L G G ++ EIA +L ++  TV  ++ +A  K+   NR  A+  A + G +
Sbjct: 168 LGLIGAGLSNAEIAARLFIAESTVKTHINNAFAKIGVRNRAGAVRYAYQTGLV 220


>gi|116073957|ref|ZP_01471219.1| Bacterial regulatory protein, LuxR family [Synechococcus sp.
           RS9916]
 gi|116069262|gb|EAU75014.1| Bacterial regulatory protein, LuxR family [Synechococcus sp.
           RS9916]
          Length = 92

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   ++L  +G T++EIAE+L +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 13  SLSGRELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDHG 72

Query: 233 YIC 235
            IC
Sbjct: 73  KIC 75


>gi|89894389|ref|YP_517876.1| hypothetical protein DSY1643 [Desulfitobacterium hafniense Y51]
 gi|89333837|dbj|BAE83432.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 214

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L     G ++ EI + L +S  TV  +L S   KL   +R QA  KA++  
Sbjct: 150 GLSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLK 209

Query: 233 YI 234
            +
Sbjct: 210 LV 211


>gi|259418455|ref|ZP_05742373.1| transcriptional regulatory protein DegU [Silicibacter sp.
           TrichCH4B]
 gi|259345850|gb|EEW57694.1| transcriptional regulatory protein DegU [Silicibacter sp.
           TrichCH4B]
          Length = 212

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RET+ L L  +G  ++EI   L L+  TV  ++ S   KL A NR QA+  A    
Sbjct: 151 PLSDRETTVLNLLAEGKPNKEIGSDLNLAEPTVKMHVKSICTKLGASNRTQAVIVARDLN 210

Query: 233 YI 234
            I
Sbjct: 211 LI 212


>gi|260575467|ref|ZP_05843466.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
 gi|259022387|gb|EEW25684.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
          Length = 245

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 68/232 (29%), Gaps = 7/232 (3%)

Query: 9   KKSSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ--LICELHNYDLDSGDIP 65
           + ++S   L    L  +               S               +  Y     +  
Sbjct: 13  RAATSTDRLWQLGLDALAR-YGVTGICYAVTTSRRAALASDLTEFDFAVFRYPGAPFNEF 71

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   D  +       L  +W         E   +     E  +    G+       
Sbjct: 72  LQKQGFRNDLTVRRVVQSGLTTVWHDESLWDNAEPEERRRALAEQEMGFRIGVTTTCSFE 131

Query: 126 FHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCL 182
                 +  T  +            HG   Q IT  L+   +R        LT RE  CL
Sbjct: 132 PGCVSGIGMTMHQMPAETFTRHWSDHGPKLQAITALLDAQVRRDHLPMLIGLTPREVDCL 191

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                G   ++IAE LG+   TV+ Y+ SA  KL A  R QA+AKA+    I
Sbjct: 192 SWLAAGLRPDQIAETLGIGYRTVDKYIVSARGKLRARTRDQAVAKALTLRLI 243


>gi|221133626|ref|ZP_03559931.1| two component LuxR family transcriptional regulator [Glaciecola sp.
           HTCC2999]
          Length = 215

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L    + +   LT RE   L     G +S+ IA  L +SV TV A+  +   KL+  N  
Sbjct: 141 LASPTNPSNERLTAREQMILSHIATGQSSKAIAHTLDISVRTVEAHRRNIKSKLNIDNLA 200

Query: 223 QAIAKAIRFGYI 234
           + +  AI  G +
Sbjct: 201 ELVRYAIEQGLV 212


>gi|311898779|dbj|BAJ31187.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 234

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +R S    LT+RE   L L   G ++ EIAE+L +S  TV  ++ +   K    +R QA+
Sbjct: 163 RRPSLPDGLTQREAEVLALIAAGLSNAEIAERLFVSPATVKTHINNLFAKTAVRDRAQAV 222

Query: 226 AKAIRFGY 233
           A A R G 
Sbjct: 223 AYAFRHGI 230


>gi|297622974|ref|YP_003704408.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164154|gb|ADI13865.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 386

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAE 196
           +    EV+ +      QV+    +L     + +    LT RE   L     G ++  I++
Sbjct: 289 MEAIQEVMSDTAWFSRQVMEKLAQLRSGSVALSGTEALTPREQQVLGRIAKGLSNSAISQ 348

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +LGL+  TV  Y+ S   KL   +R +A+  A   G 
Sbjct: 349 ELGLAPQTVRNYVASIYQKLGVRSRAEAVVWARERGL 385


>gi|256395828|ref|YP_003117392.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362054|gb|ACU75551.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 258

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +A   LT RET  L+L   G ++ EIAE+L +S  TV  +L  A  KL+  +R QA+  A
Sbjct: 184 AALAALTTRETDVLRLVATGLSNGEIAERLVVSEGTVKTHLNRAMAKLNLSSRAQAVVLA 243

Query: 229 IRFGYI 234
              G +
Sbjct: 244 YESGLV 249


>gi|32472133|ref|NP_865127.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH
           1]
 gi|32397505|emb|CAD72811.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH
           1]
 gi|327539236|gb|EGF25859.1| two-component system response regulator [Rhodopirellula baltica
           WH47]
          Length = 210

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE+  L+    G T++EIA+ LG+S  TV  ++     KL   +R QA   A+R  
Sbjct: 149 PLTQRESEVLRQMALGLTNKEIAKMLGISYETVKEHVQHILRKLGVSDRTQAAVWAVRKN 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|256395654|ref|YP_003117218.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361880|gb|ACU75377.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 43/95 (45%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                 +++A+   +   +D        S+   +LT RE         G T++EIA++L 
Sbjct: 129 PSTTRRLLDAYADRFTAPSDPPAGASDPSAPLESLTRREREVFDQMVSGLTNKEIAQQLA 188

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV  ++     KL   +R+QA+  A   GYI
Sbjct: 189 LSETTVKTHVVRILAKLAVRDRVQAVIYAYETGYI 223


>gi|218514697|ref|ZP_03511537.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 124

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
           +    +G  +   +    E  +L+ E + +       V   FL     R      LT+RE
Sbjct: 10  SLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYV-ASFLRCGGARVDRDFELTDRE 68

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             CL    +G TS+EIA  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 69  LECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 124


>gi|328949883|ref|YP_004367218.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450207|gb|AEB11108.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 208

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCL 182
               GYV  ++    L + V+        A  ++++          +    LTERE   +
Sbjct: 96  AGGQGYVPKSAVEAELVDAVLAVVRGEYYAPARLLSRVAREMANPHAREAKLTERELEVV 155

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +   +G T +EIAE LG+S  TV  Y   A  KL    R + +  A+  G +
Sbjct: 156 RQIAEGKTYKEIAEHLGISEKTVATYRERAAEKLGLKTRAELVRWALERGLL 207


>gi|313901612|ref|ZP_07835050.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468115|gb|EFR63591.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 272

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE------LF 164
             FP+ L     GYV+  S    L + +     G          +V++            
Sbjct: 140 YIFPI-LEAGAAGYVLKRSAATELVSALRAVVQGHTILHPDVAAKVVSGAARRQKGEGAG 198

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +        LTERET  L L   G T++EIA++L +S+ TV A+  +   KLD  + ++ 
Sbjct: 199 EGAPRRVDGLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVEL 258

Query: 225 IAKAIRFGYI 234
              AIR G I
Sbjct: 259 TKYAIRHGLI 268


>gi|301059676|ref|ZP_07200584.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
 gi|300446242|gb|EFK10099.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
          Length = 219

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +V+  +LE  +  K  S   +LT+RE   L+L  +GY ++EIAE L +S  TV  + 
Sbjct: 133 ISDKVLEGYLEANRTLKEQSDWDSLTQREREVLKLVAEGYQNKEIAEYLFISPKTVEKHR 192

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   K D  +     A AI  G +
Sbjct: 193 ANIMRKTDLHSASSLTAYAIEKGLL 217


>gi|291571364|dbj|BAI93636.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G   +V+    +  +        ++LT RE   L+L G GY++ EIA++L +S  TV  +
Sbjct: 129 GLFEKVMAAKYKPSRDEPLPGYLQDLTPRELEVLRLIGKGYSNREIAQELFISERTVKNH 188

Query: 209 LGSATVKLDAVNRIQAIAKA 228
           + S   +L+  +R Q    A
Sbjct: 189 VSSILSRLNLRDRTQVALLA 208


>gi|254477704|ref|ZP_05091090.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11]
 gi|214031947|gb|EEB72782.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11]
          Length = 261

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 11/229 (4%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           Q+   R H  Q    A    + +I  A     +  +     +   D  +          D
Sbjct: 33  QDQQDRWHAAQRA--ADKIGVKSILVAQAVGIQGDIRWMNTDMPSDWIEEYLACGYVEVD 90

Query: 75  DFLFHF--NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
             + +     G + +    +      +                +      +     + +V
Sbjct: 91  PPVLNLSKQKGNMSVDCGVLHRGDASDKREWDLNHGLKAAGFGSLFCSCYKDATGYDRFV 150

Query: 133 IFT--SEFLMLANEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLA 185
                   L       +E       +++             +      LT+R+   L L 
Sbjct: 151 TLAYDGHHLEDQPASQVELQLFSALLVSTIERDTVAPGNGYQPVRPSPLTQRQREVLSLL 210

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G  +  IAE LGLS   V+ +  +A   L A  R  A+A A+  G+I
Sbjct: 211 AEGMMTARIAETLGLSEAAVSLHFANARKALGASTREHALALALTRGFI 259


>gi|29831078|ref|NP_825712.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608192|dbj|BAC72247.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 224

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183
                       ++A    + A G   ++I +F  L     +  +     LTERET  L 
Sbjct: 109 DASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDTTPRAPLKVRVGELTERETEVLA 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA++L ++  TV  ++G   VKL   +R QA   A   G +
Sbjct: 169 LIAQGMSNAEIADRLVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESGLV 219


>gi|225593182|gb|ACN96099.1| two-component response regulator [Fischerella sp. MV11]
          Length = 221

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G T++EIAE L ++  TV  ++ +   KL+  +R QA+  A++ G
Sbjct: 159 PLTQREQEILSLIAQGKTNQEIAEALYITTGTVRVHVHTILHKLEVRDRTQAVIVAMQAG 218

Query: 233 YI 234
            I
Sbjct: 219 LI 220


>gi|302335061|ref|YP_003800268.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Olsenella uli DSM 7084]
 gi|301318901|gb|ADK67388.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Olsenella uli DSM 7084]
          Length = 787

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 9/154 (5%)

Query: 87  IIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNGYVIFTSEF---LM 140
           ++       +  +   +                 I      G      +         + 
Sbjct: 637 VLAAIAAWRSGKDDWRRWIADALDQAKRYGYVRTITL---YGAAVLPLLTEARRHAKEMG 693

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           +  + +           + +       S  A  LT+ E   L+L     ++ EI E LG+
Sbjct: 694 VDEDQLARLVRGARAQASHYPNFMSSPSGPAEPLTKTEGQVLRLICQDKSNAEIGELLGI 753

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + TV  ++     KL    R QA ++A R   +
Sbjct: 754 KLPTVKTHVSHILTKLGVSRRAQAASEARRLHLV 787


>gi|297192920|ref|ZP_06910318.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151558|gb|EFH31236.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + R      LTERE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q 
Sbjct: 148 EPRQKELARLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQV 207

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 208 VVLAYETGLV 217


>gi|254445229|ref|ZP_05058705.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259537|gb|EDY83845.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 225

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 40/78 (51%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L L    +S+   L++RE   LQL  + ++++EIA +L +SV TV+ +  +   KL
Sbjct: 145 VMRSLILNPDAASSEIPLSDREKQILQLVAESFSTKEIASRLNISVRTVDNHRTNIMRKL 204

Query: 217 DAVNRIQAIAKAIRFGYI 234
           +  +       AI+   I
Sbjct: 205 NLHDVAALTRYAIKHELI 222


>gi|298243907|ref|ZP_06967714.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297556961|gb|EFH90825.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 514

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L  +G T+  IA +L +S+ TV  ++     KL A +R QA+A A+++G
Sbjct: 453 ELTEREREVLRLMSEGLTNRAIASRLLISIETVKTHIHHIMQKLQARDRTQAVALAMKYG 512

Query: 233 YI 234
            I
Sbjct: 513 LI 514


>gi|111023879|ref|YP_706851.1| hypothetical protein RHA1_ro06927 [Rhodococcus jostii RHA1]
 gi|110823409|gb|ABG98693.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 530

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                  A    ++A      +      +  +R+     LT+RE   L+L   G ++ EI
Sbjct: 422 ADRLKEEARTGRLDAESVAAVLAAAGQRVS-RRTPWPAGLTDREVEILRLVAQGRSNREI 480

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  L ++  T   ++     KL   NR QA   AI  G +
Sbjct: 481 AADLFIAEKTARNHVERVYAKLGVNNRTQASLAAIDRGLV 520


>gi|116672689|ref|YP_833622.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116612798|gb|ABK05522.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 218

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 43/109 (39%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    +   V+  A G           L  +  +    L+ RE   LQL 
Sbjct: 107 AGASGYMLKDAPPEHIRQAVLSAAAGGTALAPEVAARLVGRIRNPEPALSAREIQLLQLL 166

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  +  IA +L +S  TV  +L     KL   NR  AI+ A +   I
Sbjct: 167 ATGLPNRAIARRLFISEATVKTHLVHIYGKLGVDNRTAAISVATQRRII 215


>gi|291451125|ref|ZP_06590515.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354074|gb|EFE80976.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 223

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RET  L+L   G ++ EIAE+L L+  TV  ++     KL   +R QA+  A   G
Sbjct: 155 GLTPRETEVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESG 214

Query: 233 YI 234
            +
Sbjct: 215 LV 216


>gi|285017693|ref|YP_003375404.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472911|emb|CBA15416.1| probable two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 213

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RET  L+L   G++++EIA  LG++  T+  ++ +   KL   +R +A+ KA 
Sbjct: 149 RPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAF 208

Query: 230 RFGYI 234
               +
Sbjct: 209 ELQLV 213


>gi|94500443|ref|ZP_01306975.1| regulatory protein CsgD [Oceanobacter sp. RED65]
 gi|94427478|gb|EAT12456.1| regulatory protein CsgD [Oceanobacter sp. RED65]
          Length = 216

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
              +  +     Q + +           A NLT RE+  L L+  G  + +IA  L +S 
Sbjct: 121 RGELWFSRRILSQFMANNRRPPAPEQKPAHNLTRRESQILSLSASGAKNADIAAALNVST 180

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           HTV  ++ +   KLD  NRIQA+  A  
Sbjct: 181 HTVKTHMYNLFKKLDVSNRIQAVNWAKE 208


>gi|319947541|ref|ZP_08021771.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746229|gb|EFV98492.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 211

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 143 HDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 202

Query: 231 FGYI 234
              +
Sbjct: 203 HHLV 206


>gi|307330474|ref|ZP_07609617.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883899|gb|EFN14942.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 71/232 (30%), Gaps = 35/232 (15%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +           R+           D   +   L     
Sbjct: 15  VDDHPMWRDAVARDLAEAGFDVVATAGDGPQAVRRAKA-----AGPDVLVLDLNLPGL-- 67

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   V+    +L V +         +   V+ G      + 
Sbjct: 68  -PGVEVCKE--------------VLADRPELRVLVLSASGEHGDVLEAVKSGATGY-LLK 111

Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAA------RNLTERETSC 181
             S   +L       A       G    V+ ++  L  + +  A        LTERET  
Sbjct: 112 SASTEELLDAVRRTAAGDPVFTPGLAGLVLGEYRRLAGEPAPTAADQPAVPQLTERETEV 171

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 172 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 223


>gi|119485648|ref|ZP_01619923.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119456973|gb|EAW38100.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 226

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 154 YQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
            +    F E+ +   +  A+  LT+RE   L L   G +++EIA+ L ++  TV  ++ +
Sbjct: 138 QKTFGQFAEVPEGSEAYSASNPLTKREQEILALIASGKSNQEIADILYIAPGTVRVHVHT 197

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+A +R QA   AI+   +
Sbjct: 198 ILKKLNARDRTQAALVAIQKKLV 220


>gi|86146693|ref|ZP_01065014.1| response regulator [Vibrio sp. MED222]
 gi|218676377|ref|YP_002395196.1| Nitrate/nitrite response regulator protein homolog [Vibrio
           splendidus LGP32]
 gi|85835540|gb|EAQ53677.1| response regulator [Vibrio sp. MED222]
 gi|218324645|emb|CAV26216.1| Nitrate/nitrite response regulator protein homolog [Vibrio
           splendidus LGP32]
          Length = 210

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + +IE     +        V+  +L     
Sbjct: 81  VILTVSDSPADIEAIVKAGADGYLLKDTEPDELIELLKQAHSGDKAYSSVVARYLNDADS 140

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+     LTERE   LQ    GY +++IA+ L +S  TV  ++ S   KL   +R  A  
Sbjct: 141 RNDIFDQLTEREMQILQEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATV 200

Query: 227 KAIRF 231
             +  
Sbjct: 201 LYLER 205


>gi|317122209|ref|YP_004102212.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592189|gb|ADU51485.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 280

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE------LF 164
             FP+ L     GYV+  S    L + +     G          +V++            
Sbjct: 148 YIFPI-LEAGAAGYVLKRSAATELVSALRAVVQGHTILHPDVAAKVVSGAARRQKGGGPQ 206

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +        LTERET  L L   G T++EIA++L +S+ TV A+  +   KLD  + ++ 
Sbjct: 207 EGVPRRVDGLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVEL 266

Query: 225 IAKAIRFGYI 234
              AIR G I
Sbjct: 267 TKYAIRHGLI 276


>gi|318040623|ref|ZP_07972579.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CB0101]
          Length = 79

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   + L   G T++EI E+L +S  TV+ ++ +   K  A NR+  +  A+  G 
Sbjct: 3   LSERELEIIDLVAQGLTNQEIGERLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDHGK 62

Query: 234 IC 235
           IC
Sbjct: 63  IC 64


>gi|91223299|ref|ZP_01258565.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192112|gb|EAS78375.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 210

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 150 HGACYQVITDF------LELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +    +++          E+      A    LT RE   L++  +G ++ EIA+ L +S 
Sbjct: 121 NWLSRRLLDQLVNYYRGREVNSIIEPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISE 180

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           HT+ ++L +   KL+  NR QA + A R 
Sbjct: 181 HTIKSHLYNIFRKLEVKNRTQATSWAKRN 209


>gi|226312583|ref|YP_002772477.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095531|dbj|BAH43973.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 215

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +A +         ++++ +F  +    +  +  LT RE   L L   G ++ +I+ KL
Sbjct: 118 RAIAVDETPMTRELAFRILKEFAPIGSDVAQPS-KLTSREREILGLVAKGLSNRDISSKL 176

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +S HTV  +L +   KL   NR+Q    A    +
Sbjct: 177 VISEHTVKNHLKNILQKLHLENRVQLARYAFEQSW 211


>gi|223934791|ref|ZP_03626711.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896746|gb|EEF63187.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 211

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+         +      L+ RE   L+   +G   ++IA+KLG+S+HTV  Y+  
Sbjct: 132 IARKVVESLQATRPPKPDDTAELSPREREVLEGLAEGCAYKQIADKLGVSIHTVRNYIRR 191

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL   +  QA+A+  R 
Sbjct: 192 IYEKLHVRSSSQAVARYYRH 211


>gi|307311542|ref|ZP_07591183.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318897|ref|ZP_07598328.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306895311|gb|EFN26066.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306899559|gb|EFN30188.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 210

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 18/216 (8%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI--PNILIETYGDDFLF 78
           L  +   + A ++ L   + + D            ++  D        I         L 
Sbjct: 11  LAALTEYVGATHYLLARHDVSQD---GGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELE 67

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
              + L P       +  +            G    +  + F V  G  +   ++   E 
Sbjct: 68  RCLAQLQPAFHTMPDDIGLP----------RGVSRSYCAVTFSV--GRTRFSLMLLFPED 115

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           ++L+ E + +       V +  ++   +       LTERE  CL    +G TS+EIA  L
Sbjct: 116 VILSQEALRDIAVLAGYVASHKIKADVRHDRECE-LTERELECLFWIAEGKTSDEIAVIL 174

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 175 GISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 210


>gi|219668814|ref|YP_002459249.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219539074|gb|ACL20813.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 212

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L     G ++ EI + L +S  TV  +L S   KL   +R QA  KA++  
Sbjct: 148 GLSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLK 207

Query: 233 YI 234
            +
Sbjct: 208 LV 209


>gi|225175953|ref|ZP_03729945.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168541|gb|EEG77343.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 225

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +V+  F       ++ A  +LT RE   L +  +G+ ++EIA +L +S  TV A+L 
Sbjct: 131 VAAKVMQRFRRGEDSETNNAVDSLTGREVEVLTMVANGHRNQEIASRLYVSKRTVEAHLA 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KL   +R +AI  A++ G I
Sbjct: 191 SIFSKLKVGSRTEAILFALKEGMI 214


>gi|148241325|ref|YP_001226482.1| transcriptional regulator [Synechococcus sp. RCC307]
 gi|147849635|emb|CAK27129.1| ranscriptional regulator, luxR family [Synechococcus sp. RCC307]
          Length = 92

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   ++L     T++EIA +L +S  TV+ ++ +   K  + NR+  +  A+  G 
Sbjct: 18  LSERELEIIELVAAELTNQEIALRLSISKRTVDNHVSNIFTKTGSRNRVALVNWALSNGK 77

Query: 234 IC 235
           IC
Sbjct: 78  IC 79


>gi|119489708|ref|ZP_01622467.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC
           8106]
 gi|119454445|gb|EAW35594.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC
           8106]
          Length = 100

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L++RE   + L   G T++EIAE+L +S  TV+ ++ +   K +  NR+  ++ A++ G
Sbjct: 11  SLSDRELQVVDLIATGLTNQEIAEQLEISKRTVDNHISNILTKTETENRVALVSWALKSG 70

Query: 233 YIC 235
            +C
Sbjct: 71  KVC 73


>gi|221195335|ref|ZP_03568391.1| transcriptional regulator, LuxR family protein [Atopobium rimae
           ATCC 49626]
 gi|221185238|gb|EEE17629.1| transcriptional regulator, LuxR family protein [Atopobium rimae
           ATCC 49626]
          Length = 240

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEE 193
           A    +        ++   L+   + S+            LT RE     L   G ++ +
Sbjct: 131 AFTDALSMLVIICHLLDIHLDSTPRLSAVEPASDQTISSQLTRRENEVASLVCCGMSNAQ 190

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           IA KL +S  T+  +L +   KL   NR+Q I
Sbjct: 191 IASKLYVSEKTIKTHLSNIFSKLGVRNRVQLI 222


>gi|256788263|ref|ZP_05526694.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289772155|ref|ZP_06531533.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289702354|gb|EFD69783.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 240

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           G    V+ ++  L  + + AA         LT+RET  L+L   G + ++IAE+L +S  
Sbjct: 148 GLAGLVLGEYRRLASEPAPAAGTDDPGAPRLTDRETEVLRLVAKGLSYKQIAERLVISHR 207

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 208 TVQNHVQNTLGKLQLHNRVELVRYAIERGL 237


>gi|170737858|ref|YP_001779118.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820046|gb|ACA94628.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 242

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 62/228 (27%), Gaps = 20/228 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYG 73
            +    LH   +   A  FA  +        +  +    EL                   
Sbjct: 13  ADWQRALHACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRML 69

Query: 74  DDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVRL---------EGGLLPFAGIA 119
           D        +G   ++     + +E    S+   +   R                  G  
Sbjct: 70  DPLHPSRCAAGDRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDAGRTVGAF 129

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTER 177
             +R G            F     + +          ++  L   +   R      LT R
Sbjct: 130 SLLRFGIGDANGNGTAGRFAPGEIDALARLQPVAEAALSPLLRARRGIHRIGCEERLTYR 189

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           E    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 190 EEQIARLVRDGRSNKEIARDLALGPPTIKTHLMRMYRKLGVSNRTELV 237


>gi|296268635|ref|YP_003651267.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091422|gb|ADG87374.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 212

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 17/160 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138
           +          ++  R+    +P   +A  V         VI                  
Sbjct: 53  LDVHMPGGGGLEVLRRVREAGIPTRFLALSVSDAAEDVIGVIRGGARGYVTKTISGPELT 112

Query: 139 ----LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                +   + +     A + +                +LT+RE   L+L   GY  +EI
Sbjct: 113 DAIHRVADGDAVFSPRLAGFVLDAFASTPAPPIDPELDSLTQREREVLRLIARGYAYKEI 172

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L +SV TV  ++ S   KL   NR +    A     +
Sbjct: 173 AKELFISVKTVETHVSSVLRKLQLSNRHELSRWASARRLV 212


>gi|269796573|ref|YP_003316028.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098758|gb|ACZ23194.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 217

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 17/131 (12%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
               AG++            +       ++    +     A        + + +  S+  
Sbjct: 92  GGLRAGVS---------GFLLKVAPSHELIEAVSLAAQGKAHLHADVTGIVIDRFTSAPE 142

Query: 172 RNL--------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             L        T+RE   L    +G ++ EIAE L LS  TV +++     K  A +R Q
Sbjct: 143 TRLRDDLVGALTDREREVLVALAEGQSNTEIAESLHLSETTVKSHVSHIFTKTGARDRAQ 202

Query: 224 AIAKAIRFGYI 234
           A+  A   G I
Sbjct: 203 AVGIAYESGLI 213


>gi|262279135|ref|ZP_06056920.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259486|gb|EEY78219.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 239

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 5/164 (3%)

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVR 123
               +  + D      +    P     +     ++               + GI    VR
Sbjct: 77  DYECVWQFDDPITAQLHKLQKPTFVNEVMPLEDLK-KTSYYNEFLRAYGLYHGINIYFVR 135

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
            G       I+ ++   +  E             T  L +     S    LT RE   ++
Sbjct: 136 NGMDVGDLRIWRAKDADMFGEREKRILSLLEPYFTQALPVD---LSTQYGLTPREQEVVR 192

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L   G + + +A  LG+S  T+  +L +A  K+   NR +    
Sbjct: 193 LVSKGLSDKHVANLLGISFTTLRTHLNNAMRKIGCNNRTEMALL 236


>gi|108805731|ref|YP_645668.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108766974|gb|ABG05856.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 781

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 71/229 (31%), Gaps = 15/229 (6%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++ + L   L  ++            +   +     +        +     +  ++L   
Sbjct: 561 AAREHLEAGLEALRRVGDPEEVR-TCLWFLIMLACERGDAAAARAHAARMVEGASLLQYR 619

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNG 130
           Y    + H         +  +  E    +           L    G +  P    F + G
Sbjct: 620 YAAPLVLHA--------YARLAVEEGRPARALRLAGAADRLGRSIGTSVGPALRDFLRRG 671

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTERETSCLQLA 185
                +           EA  A          L +      R  A   LT RE   L+L 
Sbjct: 672 LEPAWAALGEERGRAAFEAGRALSLREAAAYALEEGPRGEERGPAGAPLTPRELEVLRLV 731

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G T  ++A +L +S  TVNA+L S   KL   +R  A+  A   G +
Sbjct: 732 GEGMTDAQVAGRLFVSTRTVNAHLRSILRKLGVRSRAAAVRLAQERGLL 780


>gi|94500934|ref|ZP_01307459.1| probable transcriptional regulator [Oceanobacter sp. RED65]
 gi|94426874|gb|EAT11857.1| probable transcriptional regulator [Oceanobacter sp. RED65]
          Length = 897

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 150 HGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           H    Q I   +EL +  S           L++RE + L+L  +G +++EIAE+L +S+H
Sbjct: 807 HKPFVQAILKNIELTEDASPNKEFAKMRLVLSQREMAVLKLIAEGLSNQEIAERLFISLH 866

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +      KLD  +R QAI KA   G +
Sbjct: 867 TVKTHARRINGKLDVKSRTQAILKAKEVGIL 897


>gi|107025940|ref|YP_623451.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692876|ref|YP_838409.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895314|gb|ABF78478.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116650876|gb|ABK11516.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
          Length = 251

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 62/228 (27%), Gaps = 20/228 (8%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYG 73
            +    LH   +   A  FA  +        +  +    EL                   
Sbjct: 22  ADWQRALHACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRML 78

Query: 74  DDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVRL---------EGGLLPFAGIA 119
           D        +G   ++     + +E    S+   +   R                  G  
Sbjct: 79  DPLHPSRCAAGDRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDAGRTVGAF 138

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTER 177
             +R G            F     + +          ++  L   +   R      LT R
Sbjct: 139 SLLRFGIGDANGNGTAGRFAPGEIDALARLQPVAEAALSPLLRARRGIHRIGCEERLTYR 198

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           E    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 199 EEQIARLVRDGRSNKEIARDLALGPPTIKTHLMRMYRKLGVSNRTELV 246


>gi|302337621|ref|YP_003802827.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634806|gb|ADK80233.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 214

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L+   +G  ++EIA++L +S  TV +++     KL+  NR+QA+  A    
Sbjct: 151 SLTTREKDVLRCMLEGKENKEIADELFISCETVKSHIKHIFRKLEVTNRVQAVQVAAEKK 210

Query: 233 YI 234
            +
Sbjct: 211 IL 212


>gi|23098524|ref|NP_691990.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776750|dbj|BAC13025.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 215

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+   L   K+  S    L+ERE     L G G T++EIA++L L++ TV  Y+ S
Sbjct: 133 VAAKVMPKLLHTSKRELSV--QLSERERVITALIGSGLTNKEIADELFLTIGTVKNYITS 190

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              K +  +R Q    A+R G 
Sbjct: 191 ILQKTEQRDRTQLAIFAVRHGI 212


>gi|88859162|ref|ZP_01133803.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88819388|gb|EAR29202.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 233

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 13/226 (5%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +K +SL +L+  ++ I   + A+N+A    ++ L+     ++  EL           N++
Sbjct: 21  EKVNSLSDLNNEVNNIAKFLNAKNYAFCVFSTNLNEQESVKIYGELGRALSRLIQDDNLI 80

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                     +  + + P+    I     ++     S + +G  +    +  P +   + 
Sbjct: 81  R--------TYCQTEVKPLKLSEITNFFELKD----SRKQKGFSIFCDTLIIPFKGTLYD 128

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G +I  +E   L  E   ++      +   F    KK+S+   N T+RE  CL+ A +G
Sbjct: 129 FGCLILRTENNKLLKEEHFKSIVIVIYMYDAFKR-CKKKSNKTVNFTKREIECLKWATEG 187

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TS EI++ L ++  TVN ++ +   K ++ NR QAIAK    G +
Sbjct: 188 KTSWEISKILTITDRTVNYHIANCIRKTNSSNRQQAIAKFYAMGIL 233


>gi|270264592|ref|ZP_06192857.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041275|gb|EFA14374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 210

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    I   V         +I              E ++E   A  +        
Sbjct: 73  LRNESIDARIIVLTVSDSRSDVYALIDAGADGYLLKDSEPEQLLEHIRAAAEGQNVISDA 132

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + D+L    ++      LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 133 VADYLSSRSEQHDPFAELTERELDVLQEVARGMSNKQVAAQLHISEETVKVHIRNMLRKL 192

Query: 217 DAVNRIQAIAKAIRF 231
           D  +R+ A    +  
Sbjct: 193 DVRSRVAATVMYLEH 207


>gi|319442313|ref|ZP_07991469.1| putative two component response regulator [Corynebacterium
           variabile DSM 44702]
          Length = 213

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 46/109 (42%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + V   A GA     +    L  +    A  LT RE   LQL 
Sbjct: 105 AGAVGYLLKDAPPAELISAVRAAATGATAMSGSVATRLMHREEEPANALTSRELEVLQLV 164

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++ EI   L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 165 ADGRSNREIGATLFLSEATVKSHLVHINTKLGVRSRTSAVAAAREAGML 213


>gi|284050884|ref|ZP_06381094.1| two-component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 215

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +      ++LT RE   L+L G GY++ EIA++L +S  TV  ++ S   +L+  +R Q
Sbjct: 143 DEPLPGYLQDLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRTQ 202

Query: 224 AIAKA 228
               A
Sbjct: 203 VALLA 207


>gi|282862337|ref|ZP_06271399.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562676|gb|EFB68216.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L  +G ++ EIA  L +S  TV  ++ +   K  A +R QA+  A   
Sbjct: 152 DGLTPREAEVLVLIAEGLSNREIARALHVSAATVKTHINNLFAKTGARDRTQAVRYAYGR 211

Query: 232 GY 233
           G 
Sbjct: 212 GL 213


>gi|282866345|ref|ZP_06275390.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282558741|gb|EFB64298.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 224

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++  +            + +   E   K       LTERE   + L   G ++ 
Sbjct: 119 VHSGDAVVAPSTTRRLLDRFSPMLPSSGREPQHKHV---ERLTEREREVMLLVAQGLSNG 175

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L LS  TV  ++G    KL   +R+Q +  A   G +
Sbjct: 176 EIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|260362858|ref|ZP_05775727.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|260880146|ref|ZP_05892501.1| putative transcriptional regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|260895263|ref|ZP_05903759.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|308085787|gb|EFO35482.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|308092058|gb|EFO41753.1| putative transcriptional regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|308112231|gb|EFO49771.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030]
          Length = 214

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   L++  +G ++ EIA+ L +S HT+ ++L +   KL+  NR QA + A R 
Sbjct: 155 ELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRN 213


>gi|258510158|ref|YP_003183592.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476884|gb|ACV57203.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 506

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELF 164
               + +  PV       G ++          +         + A      V+  + +  
Sbjct: 376 FHLSSLLVCPVIDNRRMLGIMLLDHGGRPFTPDNATIRMVEAMLARAGRMIVMQMYRQAG 435

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +    LT+RE   LQL  DG  ++EI   L +S +TV  ++ S   KL A NR +A
Sbjct: 436 AAPITPLTTLTKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEA 495

Query: 225 IAKAIRFGYI 234
           +AKA+R   I
Sbjct: 496 VAKAMRERII 505


>gi|28901301|ref|NP_800956.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835889|ref|ZP_01988556.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260900615|ref|ZP_05909010.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|28809814|dbj|BAC62789.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750643|gb|EDM61388.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308106917|gb|EFO44457.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|328469239|gb|EGF40185.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 218

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   L++  +G ++ EIA+ L +S HT+ ++L +   KL+  NR QA + A R 
Sbjct: 159 ELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRN 217


>gi|288574415|ref|ZP_06392772.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570156|gb|EFC91713.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 211

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 7/150 (4%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +     +E    L+ +++   LP A +              +       L      EA  
Sbjct: 55  LDIRMPVEDGISLARKIKDAGLPVAPVMLTSYDSQQYVLASLRAGAKGFLLKTTSPEALA 114

Query: 152 ACYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              Q        +   +           +L+ RE   L  A  G +S+E+A  L +S  T
Sbjct: 115 KALQTVVSGGLYLDSEVASAMGEVPQMEDLSPREREVLLFAARGLSSKEVASHLFISERT 174

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  +L S   KL A N+ +A+  A+++G +
Sbjct: 175 VQTHLASIYDKLGAHNKTEAMLLALKYGLL 204


>gi|148658346|ref|YP_001278551.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570456|gb|ABQ92601.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 216

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
                        +    +        + + +     ++  +   +L+ERE   L L   
Sbjct: 109 DAPAEALLQTIRRVHAGEVFIQPEIASRTLREAATGRRRAGTIPFDLSEREREVLVLLAQ 168

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G ++ EIA +L ++  TV  ++ +   KL A NR QA   A R G 
Sbjct: 169 GLSNREIAGRLSITEGTVKNHVSNILAKLQAENRTQAANIARREGL 214


>gi|307324486|ref|ZP_07603693.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889730|gb|EFN20709.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 215

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 51/109 (46%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    L + V   A G      +   +LF+ R+     L+ RE   L+L 
Sbjct: 106 AGAAGYLLKGSSRQELIDAVQTAARGETVLTPSLAGKLFRSRTVEPSPLSGREREVLRLV 165

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G G T+ EI  +L +S  TV  +L  +  KL   +R  A+ KA+  G++
Sbjct: 166 GRGLTNSEIGTELFVSEATVKTHLLRSYRKLGVSDRTAAVMKAMERGFL 214


>gi|297155595|gb|ADI05307.1| putative response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 228

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAG 186
            + T    + + + ++        +IT FL      +  A +     LT RE   + LA 
Sbjct: 113 ELLTGIRTVASGDSLLSPVAT-RALITRFLAAPDPEAPLAPSELLASLTAREREVMALAA 171

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G ++ EIAE L +S  TV  ++  A  KL A +R Q +  A + G +
Sbjct: 172 EGKSNAEIAEVLFVSPLTVRTHVQRAMNKLGARDRAQLVVIAYQSGLV 219


>gi|254424512|ref|ZP_05038230.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192001|gb|EDX86965.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 211

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V    HG  Y  I   + L ++      +LT+RE   L   
Sbjct: 101 AGARGYLLKDTTAEDLATAVRQVHHGKRYIPIEVGIRLTERI--QESDLTDRELEVLGEL 158

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +G ++ EIA+ L +S  TV  ++ +   K    +R QA+  A+R G 
Sbjct: 159 TEGKSNLEIAKALSISEGTVKFHINNILSKFGVSDRTQAVITALRRGI 206


>gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 215

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +       LT RE   L+L  +G +++EIA  L ++  TV  ++     KLD  +R QA 
Sbjct: 146 REQDGLEVLTPREQEVLRLITEGMSNKEIAANLVIAEKTVKTHVSGILNKLDLQDRTQAA 205

Query: 226 AKAIRFGY 233
             A++ G+
Sbjct: 206 IHAMKQGW 213


>gi|83310446|ref|YP_420710.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945287|dbj|BAE50151.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 209

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   LQL   G+ + EIA++LG+++ TV  +      KLD  N  +  A AIR G
Sbjct: 147 SLTAREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRG 206

Query: 233 YI 234
            I
Sbjct: 207 LI 208


>gi|253577576|ref|ZP_04854888.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843045|gb|EES71081.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 227

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +    G   Q +T  L   +        +TERE   L L  +G ++++IAE+L +S+ TV
Sbjct: 137 MPVMTGEVAQALTRGLR-QRTVQGDDSGMTEREKEVLLLIAEGKSNKDIAEELHISIKTV 195

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++ +  +K +  +R Q    A R G++
Sbjct: 196 KTHVSNLLMKCELEDRTQLAIYAHRQGWV 224


>gi|83952011|ref|ZP_00960743.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius nubinhibens ISM]
 gi|83837017|gb|EAP76314.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius nubinhibens ISM]
          Length = 252

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 65/228 (28%), Gaps = 10/228 (4%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILI 69
           +S L+ L   L                                 L N+D +  D      
Sbjct: 13  ASELETLWDHLVRRMAGYGFDRLIYGATRFRTATSLGDAEDFVILTNHDPEYMDGFVNGG 72

Query: 70  ETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFP---VR 123
             +    +        P  W     + E   + +  +  V         AG +     V 
Sbjct: 73  LYFHAPMVKWALEHEGPCSWSVLHEMAETGTLSAQERKVVAFNISHQVTAGYSISFQSVS 132

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180
                   +   +       + I   HG    ++ +   L           R+LT R+  
Sbjct: 133 ARTKAAIALTARAGMGQDEVDAIWAEHGDDILLLNNIAHLRILSLPYTSPTRSLTARQRE 192

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            L   GDG T ++IA  L L+  TV  +L  A   L      QA+ KA
Sbjct: 193 VLGWVGDGKTVQDIALLLNLTPATVEKHLRLARDALSVETTAQAVLKA 240


>gi|240949973|ref|ZP_04754289.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           NM305]
 gi|240295573|gb|EER46299.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           NM305]
          Length = 209

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    +   V         ++                ++E      +     
Sbjct: 69  LRSLRAKEVDARIVVLTVSDEQSDIVALMDAGVDGYLLKDSDTAELVENIQKAARGEMVL 128

Query: 156 --VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +   L   + ++     LT+RE   LQ    G ++++IA +L +S  TV  ++ +  
Sbjct: 129 SDAVRKHLLEHRPQADPLATLTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLL 188

Query: 214 VKLDAVNRIQAIA--KAIRFG 232
            KL+  +R+ A     A + G
Sbjct: 189 RKLNVHSRVAATVLYLAQQKG 209


>gi|239979247|ref|ZP_04701771.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 227

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RET  L+L   G ++ EIAE+L L+  TV  ++     KL   +R QA+  A   G
Sbjct: 159 GLTPRETEVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESG 218

Query: 233 YI 234
            +
Sbjct: 219 LV 220


>gi|256833092|ref|YP_003161819.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256686623|gb|ACV09516.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 233

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              ++S   +LT+RE   + L   G ++ EIA +L ++  TV  ++G    K  A +R+Q
Sbjct: 159 SSPQASTIASLTDRERDVMLLIAKGKSNTEIARELFVAEATVKTHVGRILQKFGARDRVQ 218

Query: 224 AIAKAIRFGYI 234
            +  A   G +
Sbjct: 219 IVVAAYENGLV 229


>gi|260584047|ref|ZP_05851795.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC
           700633]
 gi|260158673|gb|EEW93741.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC
           700633]
          Length = 211

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   G +++EIA++  +++ TV  ++ +   KL   +R QA   A +   +
Sbjct: 150 TSREKEVLLLIAQGKSNQEIADECFITLKTVKTHVSNILSKLQVEDRTQATIYAFKHHLV 209


>gi|237707990|ref|ZP_04538471.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237725262|ref|ZP_04555743.1| transcriptional regulator [Bacteroides sp. D4]
 gi|229436528|gb|EEO46605.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229457976|gb|EEO63697.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 216

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                C ++        +K+     +LT  E   L+L   G T++EIA +  LSV+TV  
Sbjct: 123 RLQYICTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVMT 182

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   KL+  N  +A   A+R G +
Sbjct: 183 HRKNIFRKLEVNNVYEATKYALRAGIV 209


>gi|297191605|ref|ZP_06909003.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719345|gb|EDY63253.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAA---- 171
            FP  L     GY+   ++   +     +V+    G    V    LE             
Sbjct: 94  LFPA-LRAGARGYLTKDADGDEIVRAIQDVVAGRAGLSPVVQRRLLEQVTAEPPPTGPRL 152

Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   L L  +G  + +IA +LG+S  TV  ++ +   K    +R QA+  A R
Sbjct: 153 PDGLTAREGEVLTLIAEGLGNTDIAARLGISTATVKTHINNLFAKAGLHDRAQAVRYAYR 212

Query: 231 FGY 233
            G 
Sbjct: 213 EGL 215


>gi|157691669|ref|YP_001486131.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|194014892|ref|ZP_03053509.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
 gi|157680427|gb|ABV61571.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|194013918|gb|EDW23483.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
          Length = 216

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                ++    E  +++    + LT RE   L     G +++EIA  L +S  TV  ++ 
Sbjct: 127 HITNFLVQHLTEPKEQKWELMKELTNRERDVLFEIAKGKSNKEIASSLFISEKTVKTHVS 186

Query: 211 SATVKLDAVNRIQAIAKAI 229
               KL+  +R QA   A+
Sbjct: 187 HVLSKLELADRTQAALYAV 205


>gi|332669606|ref|YP_004452614.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338644|gb|AEE45227.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 224

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 135 TSEFLMLANEVIIEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
             E ++ A             +                  LT RE   L+   +G ++ E
Sbjct: 120 GGEAVVSARVTRRMLELFAEHLPAAGADRGRDAPHPRLAGLTPREVEVLREVAEGLSNGE 179

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA++L LS  TV  ++G    KL   +R+QA+  A   G +
Sbjct: 180 IADRLFLSEATVKTHVGRILAKLRVRDRVQAVVVAYETGLV 220


>gi|291514919|emb|CBK64129.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 212

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + +     V         Q+++     +  +  +A   L+ RE   L     G +++EI
Sbjct: 111 GDVIEAVETVAAGGSYFSPQLLSSLTGRMRTREDAADEQLSSREREILVAVCRGLSNQEI 170

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L +S  TV+ +  +   K    N    +  AIR G +
Sbjct: 171 ADELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 210


>gi|68536238|ref|YP_250943.1| two-component system response regulator TcsR3 [Corynebacterium
           jeikeium K411]
 gi|260578938|ref|ZP_05846841.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
 gi|68263837|emb|CAI37325.1| two-component system response regulator TcsR3 [Corynebacterium
           jeikeium K411]
 gi|258602912|gb|EEW16186.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
          Length = 216

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  + ++   +LT RE   L LA  G ++  IA+ L L+  TV +++     KL+  NR 
Sbjct: 144 LRGRLANPFESLTNREQEVLVLASQGKSNRAIAKDLVLTEATVKSHMAHVFSKLNVKNRT 203

Query: 223 QAIAKAIRFGYI 234
            A+A A   G I
Sbjct: 204 AAVAVARERGII 215


>gi|327443251|gb|EGE89905.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
          Length = 218

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175
           L    +G+++  ++   L   +   A G           +  +          S A  LT
Sbjct: 92  LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|269837581|ref|YP_003319809.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786844|gb|ACZ38987.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 211

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQL 184
               GY++  +    L   +   A G      +    L  + +      LT RE   L+L
Sbjct: 98  AGATGYLLKDTTREDLFRAIRAAAAGQPLLAPSVAARLMARLNQPRQEPLTPREIDVLRL 157

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +++EIA +L +S  TV ++L     KLD  +R  A+  A+  G I
Sbjct: 158 VAQGASNKEIAARLSISQATVKSHLIHIFDKLDVDDRTAAVTVALERGII 207


>gi|332991886|gb|AEF01941.1| two-component system regulatory protein [Alteromonas sp. SN2]
          Length = 214

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           LE+  +       L+ +E   L+L   GY+++EI+E +  S  TV   + +   K+   +
Sbjct: 141 LEVSFESFEQPETLSPKEIEILRLVAAGYSNKEISEAMFKSTGTVKNQVSAIMAKMGVRD 200

Query: 221 RIQAIAKAIRFGYI 234
           R +A+ KA+  G++
Sbjct: 201 RTRAVLKALELGWL 214


>gi|328754436|gb|EGF68052.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
          Length = 218

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175
           L    +G+++  ++   L   +   A G           +  +          S A  LT
Sbjct: 92  LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVQQGGTVTGSKAEQLT 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|255324053|ref|ZP_05365178.1| transcriptional regulatory protein DegU [Corynebacterium
           tuberculostearicum SK141]
 gi|255298910|gb|EET78202.1| transcriptional regulatory protein DegU [Corynebacterium
           tuberculostearicum SK141]
          Length = 205

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    L   V+  A             L ++      +L+ RE   L+  
Sbjct: 97  AGAMGYLLKDSPEQALHEAVLNTAAHRRTLAPEVVDLLAQRVGRPQESLSARELEILRAL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +++E+A++L +S  TV  +L     KL    R  A+  A     I
Sbjct: 157 SSGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205


>gi|322690880|ref|YP_004220450.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455736|dbj|BAJ66358.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 248

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
             + +    GA                     LT+RE   L     G +++EIA+KL +S
Sbjct: 156 EGDFMAANVGAHGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFIS 215

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + TV  ++     K++A +R+QA+  A     +
Sbjct: 216 LPTVKTHVAHILAKINARDRVQAVVFAYENHLV 248


>gi|149187522|ref|ZP_01865819.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1]
 gi|148838402|gb|EDL55342.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1]
          Length = 210

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------ACYQV 156
           L         +   V         ++              + IIE          A    
Sbjct: 71  LREDDFQGHIVILTVSDIPADIDALVKAGADGYLLKDTEPDEIIELLRGLTSGNKAFSSA 130

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I  +LE     S     LTERE   LQ    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 131 IEKYLEERANTSDVFATLTEREMQILQEVAKGFRNKQIADRLFISESTVKVHMKSLLRKL 190

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 191 QVPSRTAATILYLER 205


>gi|309813018|ref|ZP_07706746.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308433090|gb|EFP56994.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 258

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +LT RE   L L G G ++ EIA  L +   TV  ++ +  +KL   +R+QA+  A 
Sbjct: 190 RLDDLTPREREVLGLLGRGLSNAEIAAALFVGEATVKTHVSNVLMKLGLRDRVQAVVAAY 249

Query: 230 RFGYI 234
             G +
Sbjct: 250 ETGLV 254


>gi|163800212|ref|ZP_02194113.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159175655|gb|EDP60449.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 216

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 150 HGACYQVITDFL------ELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +    +++   L      EL      A    LT RE   L++  +G ++ EIA+ L +S 
Sbjct: 127 NWLPRRLLDQLLTYYKGKELQSMIEPATEVELTRREIQVLKMLKEGGSNIEIADSLFISE 186

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           HT+ ++L +   K++  NR QA   A R 
Sbjct: 187 HTIKSHLYNIFRKIEVKNRTQATRWAKRN 215


>gi|265754224|ref|ZP_06089413.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|263234933|gb|EEZ20488.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 214

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                C ++        +K+     +LT  E   L+L   G T++EIA +  LSV+TV  
Sbjct: 121 RLQYICTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVMT 180

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   KL+  N  +A   A+R G +
Sbjct: 181 HRKNIFRKLEVNNVYEATKYALRAGIV 207


>gi|227514972|ref|ZP_03945021.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
 gi|227086671|gb|EEI21983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
          Length = 217

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L++RE     L   GYT++EIA KL +S  TV A+  +   KL   NR   +  AI   
Sbjct: 154 SLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLENRADLVRYAIHHH 213

Query: 233 YI 234
            I
Sbjct: 214 LI 215


>gi|56696641|ref|YP_167002.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678378|gb|AAV95044.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3]
          Length = 258

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 78/237 (32%), Gaps = 15/237 (6%)

Query: 13  SLQELSPRLHLIQNRIKARN-FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           SL  +       ++ +   N F    +N     P+   L     +   +   +      +
Sbjct: 14  SLSHIFDDAARWEHAVARLNEFGFKALNMGQFTPKSGILHWARSSMAPNWLKLYAEGGYS 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL-EGGLLPFAGIAFPVRLGFHKNG 130
             D  L     G   +   S +      S   L++             +  V    ++  
Sbjct: 74  DADLVLAQARQGPESLYIDSGRRLQESNSDTALALYSGLVEHGYRHVFSLIVPCPGNQAM 133

Query: 131 YVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAARNLTE----------R 177
            V   ++     +   E           + T+     +   S+ ++LT           R
Sbjct: 134 LVALFTDHPEADSWMTEQSAGMRILATVIGTNLGPGTEHGQSSGQDLTPILGTTAPLSRR 193

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L L  DG  +E+IA  + +S  TV  +L SA  KL A  R  A+ +A++ G +
Sbjct: 194 EREALHLLADGLRNEQIAAAMKISEVTVRMHLKSARDKLRAPTREAALVRAMQMGLL 250


>gi|67922881|ref|ZP_00516379.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67855305|gb|EAM50566.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 221

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 159 DFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             L L   +   +        L+ERE   L+L  +G ++ +IAE L LS +T+  ++   
Sbjct: 140 ARLVLDNLKPPTSEPNQNISLLSERELEVLKLIVEGKSNNQIAEDLYLSTNTIKTHVRGI 199

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R+QA   A+R G +
Sbjct: 200 MNKLAVDDRVQAAVVALRSGLV 221


>gi|302546104|ref|ZP_07298446.1| transcriptional regulatory protein DegU [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463722|gb|EFL26815.1| transcriptional regulatory protein DegU [Streptomyces
           himastatinicus ATCC 53653]
          Length = 228

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 151 GACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           G    V+ ++  L  + + A      A  LTERET  L+L   G + ++IAE+L +S  T
Sbjct: 137 GLAGLVLGEYRRLASEPAPATADQPVAPQLTERETEVLRLVAKGLSYKQIAERLVISHRT 196

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V  ++ +   KL   NR++ +  AI  G 
Sbjct: 197 VQNHVQNTLGKLQLHNRVELVRYAIEAGL 225


>gi|229817781|ref|ZP_04448063.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM
           20098]
 gi|229785570|gb|EEP21684.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM
           20098]
          Length = 248

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
             + +    GA                     LT+RE   L     G +++EIA+KL +S
Sbjct: 156 EGDFMAANVGAHGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFIS 215

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + TV  ++     K++A +R+QA+  A     +
Sbjct: 216 LTTVKTHVAHILSKINARDRVQAVVFAYENHLV 248


>gi|319442855|ref|ZP_07992011.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 251

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G +++EIA +L +S+ TV  ++G    K  + +R+ A+  A R 
Sbjct: 180 DPLTPREREILVLMATGASNQEIAARLFVSLPTVKTHVGRVLAKTGSRDRVHAVLFAFRH 239

Query: 232 GYI 234
           G +
Sbjct: 240 GLV 242


>gi|239942985|ref|ZP_04694922.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989445|ref|ZP_04710109.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446458|ref|ZP_06585848.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349405|gb|EFE76309.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 219

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174
           L    +G+++  +    L   V   AHG          Q+I +F+     RSS     +L
Sbjct: 100 LRVGASGFLLKDASPRQLDEAVRQVAHGEALLSPSVTRQLIQEFVRRPAVRSSTTDLRSL 159

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE    +L   GY + EIA KL L   T+ +++     KL   +R Q +  A   G +
Sbjct: 160 TGREIDVFRLLVQGYGNAEIARKLVLGESTIKSHVQHLYRKLGVRDRAQVVIFAYENGLV 219


>gi|227548560|ref|ZP_03978609.1| two-component response regulator [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079389|gb|EEI17352.1| two-component response regulator [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 201

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 41/109 (37%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V+  A G           L ++       L+ RE   LQ  
Sbjct: 93  AGALGYMLKDAPEPELHAAVLSAAGGKRVLSPQIAGVLAERVMHPDEALSTREIEILQAL 152

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EIA  L +S  TV  +L     KL   NR  A+ KA     I
Sbjct: 153 QTGASNREIASSLFISEATVKTHLIHIYSKLGVDNRTAAVDKARERRII 201


>gi|145640801|ref|ZP_01796383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|148826630|ref|YP_001291383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittEE]
 gi|229845772|ref|ZP_04465884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           7P49H1]
 gi|145274315|gb|EDK14179.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.4-21]
 gi|148716790|gb|ABQ99000.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittEE]
 gi|229810776|gb|EEP46493.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           7P49H1]
          Length = 208

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I              + ++E      Q        
Sbjct: 72  LRAEGIDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L       +   +LT+RE   L+    G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 192 NVHSRVAATVL 202


>gi|78183869|ref|YP_376303.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168163|gb|ABB25260.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 92

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
               +L+ RE   +QL  +G T++EIA++L +S  TV+ ++ +   K  + NR+  +  A
Sbjct: 9   PLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWA 68

Query: 229 IRFGYIC 235
           +  G IC
Sbjct: 69  MDNGKIC 75


>gi|117925383|ref|YP_866000.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117609139|gb|ABK44594.1| two component transcriptional regulator, LuxR family [Magnetococcus
           sp. MC-1]
          Length = 206

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               GYV+  + F  L + ++  A       +V+ + +   ++       L+ RE   ++
Sbjct: 96  AGALGYVVKDNAFSELLDAILAVAAGKRFVSEVVAEKVNELERLDDLPVQLSPREKEVVR 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  DG T++EIA  LG+S  TV+ +      KL+       +  A+R G +
Sbjct: 156 LVADGQTNKEIARSLGISPKTVDTHRTRLMRKLNLHTTADVVRYAMRMGLV 206


>gi|332799645|ref|YP_004461144.1| LuxR family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697380|gb|AEE91837.1| two component transcriptional regulator, LuxR family
           [Tepidanaerobacter sp. Re1]
          Length = 215

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               ++ ++  L +  S     +NLT RE   L     G ++ EI+  LG+S  TV  ++
Sbjct: 131 LTRALVAEYNRLTQPVSNNDVRKNLTAREKEVLADIAKGMSNREISIDLGISEKTVKNHV 190

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   KL+ ++R QA   AI+   +
Sbjct: 191 SSILRKLNLMDRTQAAVFAIKNRLV 215


>gi|261406817|ref|YP_003243058.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283280|gb|ACX65251.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 225

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERET  LQL   G  + EI+  L +S  T   ++     KL A++R QA+  AIR  
Sbjct: 163 ALTERETEVLQLLAYGKRNHEISAILCISEGTTKTHIHHIMQKLGALDRTQAVVTAIRMK 222

Query: 233 YI 234
            +
Sbjct: 223 LV 224


>gi|332072188|gb|EGI82674.1| response regulator [Streptococcus pneumoniae GA41301]
          Length = 199

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E S L+    G +++EIA+KL LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEISVLKGVAQGLSNQEIADKLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|310824729|ref|YP_003957087.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309397801|gb|ADO75260.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 200

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL--------MLANEVIIEAHGACYQV 156
              +         +   +R G       I                  + I   H     V
Sbjct: 61  LRAIRREFPDARILVLTLRQGDEDVHQAIQAGARGYLLKGATGPEILDAIRAVHRGLRHV 120

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             +   +  +R   +  LTERE   L+    G ++++IA++L ++  TV A++     KL
Sbjct: 121 APEAAAMLVERVGDS-PLTERERQTLEAMARGRSNKQIAQELSITEATVKAHVTQILSKL 179

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+ +A+R G I
Sbjct: 180 GVDDRTQAVTRALRRGLI 197


>gi|299770091|ref|YP_003732117.1| response regulator [Acinetobacter sp. DR1]
 gi|298700179|gb|ADI90744.1| response regulator [Acinetobacter sp. DR1]
          Length = 239

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 58/211 (27%), Gaps = 10/211 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              +  I   ++A   A Y  +S  +          +   D  + +     I  + D   
Sbjct: 35  ENIIADIAILLRADFAASYIWDSRHNL----SKDGVIWKIDPKAMEDY-ECIWQFDDPIT 89

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              +    P     +     ++               + GI           G +     
Sbjct: 90  AQLHKLQKPTFVNEVMPLADLK-KTGYYNEFLKTYGLYHGINIYFVRNGMDIGDLRIWRA 148

Query: 138 FLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
                     +          T  L L     S    LT RE   + L   G + +E+A 
Sbjct: 149 QDADMFGEREKRILNLLEPYFTQALPLD---LSTQYGLTPREQEVVHLVSKGLSDKEVAS 205

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LG+   T+  +L +A  K+   NR +    
Sbjct: 206 LLGIGFTTLRTHLNNAMRKIGCNNRTEMALL 236


>gi|205374386|ref|ZP_03227184.1| spore germination protein E [Bacillus coahuilensis m4-4]
          Length = 74

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTRREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|218247412|ref|YP_002372783.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061251|ref|YP_003139139.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167890|gb|ACK66627.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591417|gb|ACV02304.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 210

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 159 DFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             L L   +            L+ERE   L+L  +G ++ EIAE L LS +T+  ++   
Sbjct: 129 ARLVLDNLKPPTPEPNQNLALLSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGI 188

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R+QA   A+R G +
Sbjct: 189 MNKLAVDDRVQAAVVALRSGLV 210


>gi|68249325|ref|YP_248437.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           86-028NP]
 gi|145628395|ref|ZP_01784196.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.1-21]
 gi|145638479|ref|ZP_01794089.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittII]
 gi|68057524|gb|AAX87777.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           86-028NP]
 gi|144980170|gb|EDJ89829.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.1-21]
 gi|145272808|gb|EDK12715.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittII]
 gi|309751610|gb|ADO81594.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R2866]
 gi|309973777|gb|ADO96978.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R2846]
          Length = 208

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I              + +++      Q        
Sbjct: 72  LRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLDQIKRIAQGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L       +   +LT+RE   L+    G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 192 NVHSRVAATVL 202


>gi|307711412|ref|ZP_07647828.1| response regulator [Streptococcus mitis SK321]
 gi|307616785|gb|EFN95969.1| response regulator [Streptococcus mitis SK321]
          Length = 210

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            PV L     GY++ TS    L  A   +     A  Q ++  +E  +       +LT R
Sbjct: 90  MPV-LNAGARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA   + +   +
Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYSFQHHLV 205


>gi|302559483|ref|ZP_07311825.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477101|gb|EFL40194.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183
                       ++A    + A G   ++I +F  L  +  +  R     LTERET  L 
Sbjct: 105 DASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDARPRTPLRQRVGELTERETEVLA 164

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA +L ++  TV  ++G   VKL   +R QA   A   G +
Sbjct: 165 LIAQGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 215


>gi|317482273|ref|ZP_07941294.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916289|gb|EFV37690.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 248

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 242

Query: 229 IRFGYI 234
                +
Sbjct: 243 YENHLV 248


>gi|310643684|ref|YP_003948442.1| transcriptional regulator, luxr family [Paenibacillus polymyxa SC2]
 gi|309248634|gb|ADO58201.1| Transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2]
          Length = 75

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L     T+ +IA +L +S  TV  ++ +   KL+   R QA+ + IR G
Sbjct: 13  LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRLG 71


>gi|307327036|ref|ZP_07606226.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887334|gb|EFN18330.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 229

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++  +            ++        +       LT+RE   + L   G ++ 
Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAP-MLPGGGGSGGRVRPELERLTDREREVVLLVAQGLSNG 177

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L LS  TV  ++G    KL+  +R+Q +  A   G +
Sbjct: 178 EIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETGLV 219


>gi|88800203|ref|ZP_01115771.1| probable two component response regulator transcription regulator
           protein [Reinekea sp. MED297]
 gi|88777049|gb|EAR08256.1| probable two component response regulator transcription regulator
           protein [Reinekea sp. MED297]
          Length = 217

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++                LTER+   L     G++S+EIAEKL LS HTV  ++ +
Sbjct: 133 IIARLMLQKFHRNTPTPKTPETLTERQVKILTYVSQGFSSKEIAEKLSLSYHTVTTHIKN 192

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R +A+ +A + G +
Sbjct: 193 IYAKLQVNSRTEALHEAAKLGIL 215


>gi|269965326|ref|ZP_06179446.1| putative transcriptional regulator, LuxR family [Vibrio
           alginolyticus 40B]
 gi|269829972|gb|EEZ84201.1| putative transcriptional regulator, LuxR family [Vibrio
           alginolyticus 40B]
          Length = 218

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 150 HGACYQVITDFLELFKKRS------SAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +    +++   +  ++ R        A    LT RE   L++  +G ++ EIA+ L +S 
Sbjct: 129 NWLSRRLLDQLVNYYRGREANNIIEPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISE 188

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           HT+ ++L +   KL+  NR QA + A R 
Sbjct: 189 HTIKSHLYNIFRKLEVKNRTQATSWAKRN 217


>gi|271964056|ref|YP_003338252.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507231|gb|ACZ85509.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           + +++       + +              +LT RE   L+    G T+ EIA +L +   
Sbjct: 123 DALLDPAVTTRVIASFAGRHDPAPPPQLADLTPRELEVLRFLARGLTNAEIAGQLFVGEA 182

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  ++    +KL   +R QA+  A   G +
Sbjct: 183 TVKTHVARVLMKLHLRDRAQAVVFAYESGVV 213


>gi|160896554|ref|YP_001562136.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160362138|gb|ABX33751.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 223

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 42/126 (33%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
           +           +   +                 +++ E++ +   A         +  +
Sbjct: 95  LAAALRNGAQGYLLKTIDGDLLSEALRRAARGEPVVSPEMMGKLVAAFQSQGAPEPQAPE 154

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              + A  L+ RE   L     G +++EIA  L ++  TV  ++     KL   +R+QA 
Sbjct: 155 PDEAPASPLSPREEEVLVQIARGASNKEIARTLDIAETTVKIHVQHILRKLGLSSRVQAA 214

Query: 226 AKAIRF 231
             A   
Sbjct: 215 VYASER 220


>gi|33866798|ref|NP_898357.1| transcriptional regulator [Synechococcus sp. WH 8102]
 gi|33639399|emb|CAE08783.1| possible transcriptional regulator [Synechococcus sp. WH 8102]
          Length = 91

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 39/75 (52%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +           +L+ RE   ++L  +G T++EIA++L +S  TV+ ++ +   K  + N
Sbjct: 1   MSSSDPSDPLNISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60

Query: 221 RIQAIAKAIRFGYIC 235
           R+  +  A+  G IC
Sbjct: 61  RVALLNWAMDNGKIC 75


>gi|309789860|ref|ZP_07684439.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308228164|gb|EFO81813.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 203

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182
                GY+    E   LA  +    HG       +   L     +++   +LT RE   L
Sbjct: 91  RAGALGYLYKDVEADQLAIAIRNAMHGRATIDAQLLHVLTHQTDKAAQRPDLTNREREVL 150

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L   G T+ +IA+ L +S  TV  ++ S   KL   NR +A   A++   I
Sbjct: 151 RLLVAGKTNHQIADLLKISPATVRIHVSSILAKLGVNNRTEAAIIAVQHKLI 202


>gi|307295298|ref|ZP_07575137.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878801|gb|EFN10020.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 222

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 11/196 (5%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
           L   +  +        +                   P    +              +   
Sbjct: 9   LATTVFGWSGAQDVWWDDRRFALKTPLAEACRIEGQPFWADASGAWNEQGKRILAHLDFS 68

Query: 110 GGLLPFAG---IAFPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVIT------- 158
                 A    I  PV L F + G V     + L       ++ H     +++       
Sbjct: 69  YFGKMVAHPASIVVPVHLPFSRIGMVALSCFDNLRADLSAELKRHYYLIHLLSHFFINDY 128

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L    +       LT  E SCL+  G G T +E+A  +G +  T+  +L +A  KL A
Sbjct: 129 AHLSRKDRWLPTWAALTPLEVSCLRWIGRGKTDDEVAAIMGRARPTIRFHLQNAAKKLGA 188

Query: 219 VNRIQAIAKAIRFGYI 234
           VNR QA+  A + G++
Sbjct: 189 VNRTQAVFLAAQLGFL 204


>gi|78213914|ref|YP_382693.1| LuxR family transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198373|gb|ABB36138.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9605]
          Length = 92

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                   +L+ RE   ++L  +G T++EIA++L +S  TV+ ++ +   K  + NR+  
Sbjct: 5   DGTDPLEISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVAL 64

Query: 225 IAKAIRFGYIC 235
           +  A+  G IC
Sbjct: 65  LNWAMDNGKIC 75


>gi|16272666|ref|NP_438884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           Rd KW20]
 gi|145630463|ref|ZP_01786243.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|145632075|ref|ZP_01787810.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           3655]
 gi|145634865|ref|ZP_01790573.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittAA]
 gi|145637737|ref|ZP_01793389.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittHH]
 gi|148827914|ref|YP_001292667.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittGG]
 gi|229844595|ref|ZP_04464734.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           6P18H1]
 gi|260579818|ref|ZP_05847648.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           RdAW]
 gi|260583177|ref|ZP_05850957.1| nitrate/nitrite response regulator protein narP [Haemophilus
           influenzae NT127]
 gi|319775331|ref|YP_004137819.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3047]
 gi|319897771|ref|YP_004135968.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3031]
 gi|329122673|ref|ZP_08251251.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           aegyptius ATCC 11116]
 gi|1171656|sp|P44845|NARP_HAEIN RecName: Full=Nitrate/nitrite response regulator protein homolog
 gi|1573730|gb|AAC22384.1| nitrate/nitrite response regulator protein (narP) [Haemophilus
           influenzae Rd KW20]
 gi|144983853|gb|EDJ91295.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|144986982|gb|EDJ93512.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           3655]
 gi|145268031|gb|EDK08027.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittAA]
 gi|145269086|gb|EDK09037.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittHH]
 gi|148719156|gb|ABR00284.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittGG]
 gi|229812309|gb|EEP47999.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           6P18H1]
 gi|260093102|gb|EEW77035.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           RdAW]
 gi|260093795|gb|EEW77703.1| nitrate/nitrite response regulator protein narP [Haemophilus
           influenzae NT127]
 gi|301169444|emb|CBW29044.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Haemophilus influenzae 10810]
 gi|317433277|emb|CBY81652.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3031]
 gi|317449922|emb|CBY86134.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3047]
 gi|327472547|gb|EGF17977.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           aegyptius ATCC 11116]
          Length = 208

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I              + ++E      Q        
Sbjct: 72  LRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L       +   +LT+RE   L+    G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 192 NVHSRVAATVL 202


>gi|126728963|ref|ZP_01744778.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37]
 gi|126710893|gb|EBA09944.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37]
          Length = 298

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 80/240 (33%), Gaps = 11/240 (4%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
           + L   +++   +      L  +     +  +     + DF   +Q       +  D  D
Sbjct: 22  DFLLRLEATRTTD--AVWELFLDLAHGLDLNVVEYVYSADFRNWEQAQFIRTTFTSDWLD 79

Query: 64  IPNILIETYGDDFLF-HFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                           H    L P  I    +     I +  +  V L       AG+AF
Sbjct: 80  RVRAYPHIRDTSDFRTHGCRYLTPLKIGAAYLPSMGEISADKRRHVLLAAEHGLNAGVAF 139

Query: 121 PVRLGF-HKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNL 174
           P+R+G       + F  +    A + ++       H A       + ELFK        L
Sbjct: 140 PLRMGDPGHAALITFGGDHSAEAFDALLARHGWTLHTAALAGHARYAELFKTEFIERNQL 199

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T ++   L L G G   ++IA KLG+S   V   L S   K  A NR      A R G +
Sbjct: 200 TAKQKELLCLIGHGMMDKQIAHKLGVSFSAVRQRLASVQAKTGAQNRADLAGLAARIGLV 259


>gi|291299967|ref|YP_003511245.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569187|gb|ADD42152.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179
           L    NG+++  +    L   + + A G           L      + +  A  LTERE 
Sbjct: 96  LRAGANGFLLKRTPPDDLLAGIRVVARGDALLFPAAVRRLAAGHTGRSTLDAAGLTEREA 155

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G ++ EIA +L LS  TV  ++     KL   +R QA+ KA   G++
Sbjct: 156 EVLRLMARGLSNAEIAARLFLSAETVKTHVAKILAKLRVRDRTQAVIKAYEAGFV 210


>gi|157150612|ref|YP_001449919.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075406|gb|ABV10089.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L   GY ++ IA++L +S+ TV  ++ +   KL+  +R QA+  A +
Sbjct: 146 HDDLTARERDILGLLAKGYENQRIADELYISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 205

Query: 231 FGYI 234
              +
Sbjct: 206 HHLV 209


>gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 229

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 76/226 (33%), Gaps = 12/226 (5%)

Query: 14  LQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70
           + +       + + ++   F++    N+   +   QQ      + +  +   D    L +
Sbjct: 8   VDDEPGLREAVSDYLQESGFSVQVASNAREGWDWMQQNTPDLVISDVMMPQVDGYQFLKQ 67

Query: 71  TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
              D          +P+I+   + +  + +      +   L     P   +A  V     
Sbjct: 68  LREDP-----RFQTVPVIFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAI-VENLLS 121

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +        E   +    +         ++T    + +  +    +LT RE S L L  +
Sbjct: 122 RRLTKATGEESETIDIAELANQIAQIKALLTQRSAISQSPAPFKIDLTPREQSVLNLVAE 181

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G  ++EIA +L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 182 GLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 227


>gi|332663404|ref|YP_004446192.1| LuxR family ATP-dependent transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332218|gb|AEE49319.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 147

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L   +     NL++RE   L L   GY+++EIAE L +S++T+  +  +  +KLD   R
Sbjct: 75  RLEPIQLLEKYNLSKREYEVLTLIAQGYSNQEIAETLFVSLNTIKTHSSNVFLKLDVKRR 134

Query: 222 IQAIAKAIRFGYI 234
            QA+ KA   G +
Sbjct: 135 TQAVQKAKEIGLL 147


>gi|222110965|ref|YP_002553229.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|221730409|gb|ACM33229.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 262

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +   +    +   +                   ++       L++RE   L++   G
Sbjct: 157 QAVLQVANGGASITPNLARRLLQRFDPSGAAAPHAQRRVEQETERLSQREKEVLRMVASG 216

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           YTS EI  +L +S  TVN ++ +   KL    R QA+  A   G 
Sbjct: 217 YTSAEIGNRLFISSLTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 261


>gi|225163774|ref|ZP_03726073.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224801604|gb|EEG19901.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 227

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 6/137 (4%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNG-YVIFTSEFLMLANEVIIEAHGACYQVITDFL 161
            L  +++   L    I   +              +   +L ++   +     ++V     
Sbjct: 66  DLIQQIKDAGLLTRIIMLTMHRTRLTVHEAFSVGANAFVLKSDAFEDLVDIIHRVHEGEN 125

Query: 162 ELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
            L  K            L+ RE   L+    G +++EI+ +L +S  TV  +      KL
Sbjct: 126 TLTSKGLPPYEPACAATLSPREKDVLEGISAGLSNKEISRRLAISSKTVETHRSRIMQKL 185

Query: 217 DAVNRIQAIAKAIRFGY 233
           +     + + +A+R G 
Sbjct: 186 NVTKATELVREAMRSGL 202


>gi|90410965|ref|ZP_01218979.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum 3TCK]
 gi|90328178|gb|EAS44489.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum 3TCK]
          Length = 194

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156
           +    +  + +   V         ++              + +I               +
Sbjct: 57  MRAEGILASIVVLTVSDSRSDVKALVAAGADGYLLKDTEPDELISLLKQALCGGKAYSNI 116

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + + LE   ++     +LT+RET  LQ    GY +++IA+ L +S  TV  ++ S   KL
Sbjct: 117 VREHLESNTEQDCLLSSLTDRETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKL 176

Query: 217 DAVNRIQAIAK 227
              +R  A   
Sbjct: 177 QVKSRTAATVL 187


>gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 148 EAHGACYQVITDFLELFKKR---------SSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           E       ++     L + +               LT  ET  LQ    G ++ EIA +L
Sbjct: 119 ELLAQIQALLKQTARLREAQGRQALPGPTPPPGIELTPTETRILQYVARGMSNREIAAEL 178

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S  TV +++ +   K    NR +    AI + Y+
Sbjct: 179 HVSQRTVESHVSNMLGKTGCHNRTELARWAIDYHYV 214


>gi|297565492|ref|YP_003684464.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296849941|gb|ADH62956.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 211

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
               L + R+ +  +L+ RE   L L   G +++EIA +L +S  TV  +L     KL  
Sbjct: 132 AARLLGRMRAPSDESLSTRELEVLSLVAKGLSNKEIARELKISEATVKTHLLHTFGKLGV 191

Query: 219 VNRIQAIAKAIRFGYI 234
            +R  A+  A+  G +
Sbjct: 192 DDRTAAVTVALERGIL 207


>gi|291295193|ref|YP_003506591.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470152|gb|ADD27571.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 216

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   EV+++A     Q+I DF    +    A   L+ERE   L+L   GYT+ EIA +
Sbjct: 116 RRVYQGEVLLDAEM-AEQIIQDFKAKQETTPKAHAELSEREVQILRLVAQGYTNLEIAAE 174

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L LS  TV   L     KL   NR QA   A+R G 
Sbjct: 175 LSLSEKTVRNRLSDIFQKLHLNNRTQAALYALREGL 210


>gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 231

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 79/227 (34%), Gaps = 12/227 (5%)

Query: 14  LQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70
           + +       +++ ++   F++    N+   +   QQ      + +  +   D    L +
Sbjct: 8   VDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVDGYQFLKQ 67

Query: 71  TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
              D          LP+++   + +  + +      +   L     P   +A    L   
Sbjct: 68  LREDP-----RFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLLTR 122

Query: 128 KNGYVIFTSEFLM-LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
           +N     T+E         +         ++T    + +  +    +LT RE S L L  
Sbjct: 123 RNSKPPKTTEEGETPDIAELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVA 182

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +G  ++EIA +L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 183 EGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|37519813|ref|NP_923190.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210804|dbj|BAC88185.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 232

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 39/64 (60%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LTERE   LQL   G+++E IA++L ++V TV  ++ +   KL A +R QA   A+R
Sbjct: 168 ASPLTERELEVLQLIVQGHSNEGIAQQLYITVGTVKTHVRNILSKLCADDRTQAAVLALR 227

Query: 231 FGYI 234
            G +
Sbjct: 228 SGLV 231


>gi|317968117|ref|ZP_07969507.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CB0205]
          Length = 89

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   +QL   G T++EI E L +S  TV+ ++ +   K  A NR+  +  A+  G 
Sbjct: 14  LSERELEIIQLVAQGLTNQEIGENLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDHGK 73

Query: 234 IC 235
           IC
Sbjct: 74  IC 75


>gi|319762877|ref|YP_004126814.1| regulatory protein luxr [Alicycliphilus denitrificans BC]
 gi|330824956|ref|YP_004388259.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117438|gb|ADU99926.1| regulatory protein LuxR [Alicycliphilus denitrificans BC]
 gi|329310328|gb|AEB84743.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 264

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 39/105 (37%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +   +    +   +         +         ++       L++RE   L++   G
Sbjct: 159 QAVLQVANGGASITPHLARRLLQRFDRAAAPATHEQQQDERETERLSQREKEVLRMVASG 218

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           YTS EI  +L +S  TVN ++ +   KL    R QA+  A   G 
Sbjct: 219 YTSAEIGTRLLISSLTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 263


>gi|254507717|ref|ZP_05119849.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           16]
 gi|219549414|gb|EED26407.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           16]
          Length = 196

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 11/138 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156
              L         +   V         ++              + ++E      +     
Sbjct: 54  LNALRADGCDATIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVELLKVSLRGNKAY 113

Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +  +L   +  +     LT+RE   L+    GY +++IA+ L +S  TV  ++ S  
Sbjct: 114 SKEVAKYLADRENSTDVFDELTDREMQILKEVAKGYRNKQIADTLFISESTVKVHMKSLL 173

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   +R  A    +  
Sbjct: 174 KKLSVPSRTAATVMYLER 191


>gi|160898821|ref|YP_001564403.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160364405|gb|ABX36018.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 259

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 35/73 (47%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            E  ++    A  L+ RE   L++   GYTS EI  +L +S  TVN ++ +   KL    
Sbjct: 186 AEPKRRTPDEADRLSTREREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRT 245

Query: 221 RIQAIAKAIRFGY 233
           R QA+  A   G 
Sbjct: 246 RAQAVRFASLRGL 258


>gi|309791797|ref|ZP_07686284.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308226119|gb|EFO79860.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 209

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L    +++     LTERE   L+L  +G  + EIAE+L +S+ TV  ++ +  +KL  
Sbjct: 134 QALVHASQQAQETEVLTERERDVLKLLVEGLNNAEIAERLVVSLSTVKYHISNILMKLGV 193

Query: 219 VNRIQAIAKAIRFGYI 234
            NR+ A+ KAI+   +
Sbjct: 194 DNRVAAVTKAIQKKMV 209


>gi|256389850|ref|YP_003111414.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356076|gb|ACU69573.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 229

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 42/96 (43%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              +  +++  A GA                 +A +L+ RE   L+L   G+++ EIA+K
Sbjct: 128 DPAVQRQLLAAATGANTGTGNGTPTAPAAEPESADDLSPREADVLRLIAAGHSNREIAKK 187

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +   TV +++     K    +R QA+  A   GY
Sbjct: 188 LFVGEATVKSHINRIFTKTGCRDRAQAVQYAFTHGY 223


>gi|269124429|ref|YP_003297799.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309387|gb|ACY95761.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178
               GYV+ +     L         G       A   +I  +LE  ++       LT RE
Sbjct: 127 AGAAGYVLKSLADRDLVQACRAAVRGEPFLYPGAISVLIRSYLEQARQGEEPETPLTPRE 186

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+L  +G++S EIA+ L +SV TV  +  +   KL   +R++    AIR G I
Sbjct: 187 EEILKLVAEGHSSREIADTLFISVKTVERHRANILAKLGMKDRLELTRYAIRTGLI 242


>gi|75910296|ref|YP_324592.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75704021|gb|ABA23697.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 237

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  DG ++  IAEKL +SV TV  ++ +   KL   +R Q   +A+R G
Sbjct: 175 PLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIAVRALRAG 234

Query: 233 YI 234
            +
Sbjct: 235 LV 236


>gi|317126112|ref|YP_004100224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590200|gb|ADU49497.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 217

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183
               G++   +    LA  V   A G           + + R  A     LT+RE   L 
Sbjct: 100 AGAVGFISKAAPGRELATGVRDAAAGRLVLQSQLLARVLRPRGPANDGVMLTDRERQVLS 159

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  DG  + EIA++L +S  TV  +  S   KL A +R +A+ KA+  G I
Sbjct: 160 LLVDGLHNREIADRLHISSRTVERHCDSLYGKLGAGSRTEAVVKALSHGII 210


>gi|119717865|ref|YP_924830.1| two component LuxR family transcriptional regulator [Nocardioides
           sp. JS614]
 gi|119538526|gb|ABL83143.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 215

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVI------IEAHGACYQVITDFLELFKKRSSAA 171
           +   +R G           E ++ A   +      + A     +++  +    ++  + A
Sbjct: 90  VYQAMRAGAAGFLLKDMAGEDIVAAVRQVAHGADALLAPAVTRRLVDRYTRERRRPPAPA 149

Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   L+L   G ++ EIA +L +   TV  ++    +KL   +R+QA+  A  
Sbjct: 150 LDQLTPREHDVLRLIAAGLSNAEIAAELFIGETTVKTHVARVLMKLRLRDRVQAVVLAYE 209

Query: 231 FGY 233
            G 
Sbjct: 210 SGL 212


>gi|302552868|ref|ZP_07305210.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470486|gb|EFL33579.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 268

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----------KRSSAAR 172
           L    +G+++       L + V + A G      +    L +           +      
Sbjct: 94  LHAGASGFLLKDVRRDDLVHAVRVVAQGDSLLAPSVARRLVEQYTRPGAARPRRPDPRLD 153

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L   G ++ EIA +L +S HTV  ++G+   KL   +RIQA+  A   G
Sbjct: 154 VLTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETG 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|37676847|ref|NP_937243.1| response regulator [Vibrio vulnificus YJ016]
 gi|326424276|ref|NP_762663.2| nitrate/nitrite response regulator protein [Vibrio vulnificus
           CMCP6]
 gi|37201391|dbj|BAC97213.1| response regulator [Vibrio vulnificus YJ016]
 gi|319999662|gb|AAO07653.2| Nitrate/nitrite response regulator protein [Vibrio vulnificus
           CMCP6]
          Length = 210

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156
           L       + +   V         ++              + ++E     +        V
Sbjct: 71  LRADGCEASIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVELLEKAHLGDKAYSSV 130

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L   ++ +     LTERE   LQ    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 131 VAKYLLQREENTDVFDELTERERQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 190

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 191 KVPSRTAATVLFLER 205


>gi|17232127|ref|NP_488675.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133772|dbj|BAB76334.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 219

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L+L   G  + EIA++L +S  TV  ++ +   +L+  +R QA   A
Sbjct: 154 LTPREKEVLRLIAAGANNREIAQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 208


>gi|158317365|ref|YP_001509873.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112770|gb|ABW14967.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec]
          Length = 347

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 8/228 (3%)

Query: 9   KKSSSLQELS-PRLHLIQNRIKARNFALY--TINSALDFPRRQQLICELHNYDLDSGDIP 65
           ++++SL       L  +   +  R+ A +  +   A     R               +  
Sbjct: 109 ERAASLPAFREAALDGMARHLGYRHSAFFLGSSPQATFQDARPTGRGLALRMAGPFLERY 168

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
             L E + D            +    I      E   +L  R        A +   +  G
Sbjct: 169 RSL-EVFNDPESLRLMWERGLVTLDEIGVPDRPEVRLRL-ERFLRAHGIHAKLLIRLAGG 226

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCL 182
                 V                      + + + L  + + +        L+ RE   +
Sbjct: 227 SGVGAVVSLLDPRPGAFGPRDRAVGAVLARHLGNLLRFYIRVNPGPAVTAKLSARERDVV 286

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +L  +G ++ ++AE L +S+ TV  +L  A V     NR Q      R
Sbjct: 287 RLVAEGQSNRQVAEALCISIDTVKHHLTHALVATGCSNRTQLALAWQR 334


>gi|113476331|ref|YP_722392.1| LuxR family transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110167379|gb|ABG51919.1| transcriptional regulator, LuxR family [Trichodesmium erythraeum
           IMS101]
          Length = 87

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 40/63 (63%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ERE   ++L  DG T+E+IA +L +S  TV+ ++ +   K    NR++ +  A+++G
Sbjct: 11  SLSERELQVIELVADGLTNEKIASRLEISKRTVDNHISNILSKTSTHNRVELVRWALQWG 70

Query: 233 YIC 235
            +C
Sbjct: 71  KVC 73


>gi|320449580|ref|YP_004201676.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01]
 gi|320149749|gb|ADW21127.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01]
          Length = 217

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +   +  +   + A EV+++A     ++I DF    +        L+ERE   L+L   G
Sbjct: 107 DASELIGAIRRVHAGEVLLDAE-LAGRIIQDFRAKKESSLPLHAELSEREIQILKLVAQG 165

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           YT+ EIA +L LS  TV   L     KL   NR QA   AIR G 
Sbjct: 166 YTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210


>gi|313764565|gb|EFS35929.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313807407|gb|EFS45894.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313816106|gb|EFS53820.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818453|gb|EFS56167.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820216|gb|EFS57930.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313822975|gb|EFS60689.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827995|gb|EFS65709.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|314915562|gb|EFS79393.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918484|gb|EFS82315.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314919972|gb|EFS83803.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314925444|gb|EFS89275.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931985|gb|EFS95816.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955854|gb|EFT00254.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958335|gb|EFT02438.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314960110|gb|EFT04212.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314978316|gb|EFT22410.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314987819|gb|EFT31910.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990039|gb|EFT34130.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315084426|gb|EFT56402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315085766|gb|EFT57742.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315088816|gb|EFT60792.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315098426|gb|EFT70402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101218|gb|EFT73194.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315108440|gb|EFT80416.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327332048|gb|EGE73785.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327453760|gb|EGF00415.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328753578|gb|EGF67194.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
          Length = 218

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175
           L    +G+++  ++   L   +   A G           +  +          S A  LT
Sbjct: 92  LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|228925473|ref|ZP_04088567.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944022|ref|ZP_04106406.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815693|gb|EEM61930.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228834218|gb|EEM79761.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R QA   
Sbjct: 145 PEQLAQLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIY 204

Query: 228 AIRFGY 233
           A+R+G 
Sbjct: 205 AVRYGI 210


>gi|126657363|ref|ZP_01728522.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126621350|gb|EAZ92062.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 210

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 159 DFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             L L   +            L+ERE   L+L  +G ++ EIAE L LS +T+  ++   
Sbjct: 129 ARLVLDNLKPPTPEPNQNIALLSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGI 188

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R+QA   A+R G +
Sbjct: 189 MNKLAVDDRVQAAVVALRSGLV 210


>gi|15896845|ref|NP_350194.1| regulatory protein [Clostridium acetobutylicum ATCC 824]
 gi|15026710|gb|AAK81534.1|AE007857_7 Regulatory protein related to malT, positive regulator of mal
           regulon (ATPase and HTH-type DNA-binding domain)
           [Clostridium acetobutylicum ATCC 824]
 gi|325511019|gb|ADZ22655.1| Positive regulator of mal regulon (ATPase and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 862

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L++  DG +++EI   L +S+ TV  ++ +   KL   NR+QA+ KA     
Sbjct: 800 LSERELEVLEVLCDGNSNKEIGSILNISLSTVKTHMINIYSKLHVSNRLQAVEKAKELNL 859

Query: 234 I 234
           +
Sbjct: 860 L 860


>gi|311695311|gb|ADP98184.1| regulatory protein, LuxR [marine bacterium HP15]
          Length = 900

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           +  E+     + A  ++ERE   L+L   G +++EIA+KL +S+HTV  +      KL+ 
Sbjct: 825 ELREVAGTLDTLAEPISEREQGVLELIAKGLSNQEIADKLHISLHTVKTHARRINAKLEV 884

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QAI +A   G +
Sbjct: 885 KSRTQAIVRARELGLL 900


>gi|302538376|ref|ZP_07290718.1| predicted protein [Streptomyces sp. C]
 gi|302447271|gb|EFL19087.1| predicted protein [Streptomyces sp. C]
          Length = 516

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 36/89 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +        V T   E     ++    LT RE    +L   G  +  IA +L +SV TV
Sbjct: 421 RLLTRLLSTYVRTAPREPRPAPATTPDGLTPRELEIWRLLARGLDNAAIAAELDISVSTV 480

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++ +   KL   +R QA+  A   G +
Sbjct: 481 KNHITAVFGKLGVRDRAQAVIAAYETGLV 509


>gi|226306620|ref|YP_002766580.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229493687|ref|ZP_04387472.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226185737|dbj|BAH33841.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229319648|gb|EEN85484.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 219

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++       LTERE   L     G ++ EIA++L LS  T+ +++G    KLD  +R+QA
Sbjct: 146 RRDPVVLDVLTEREREVLGHVATGLSNIEIAQQLYLSESTIKSHVGRILTKLDLRDRVQA 205

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 206 VVLAYETGLV 215


>gi|218514607|ref|ZP_03511447.1| autoinducer transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 161

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 8/162 (4%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                  LP  W  ++       +  + V  +   +   G + PV     +   +   + 
Sbjct: 1   KQGFERQLPFDWSEVE---PTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSMNAR 57

Query: 138 FLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                   ++           + +    +      +     L+ RE  CL     G   +
Sbjct: 58  IPADDWAELVRRCRNEWIEIAHLIHQKAVYELYGENDPVPALSPREIECLHWTALGKDYK 117

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +I+  LG+S HT   YL +A  KL       A ++A++   I
Sbjct: 118 DISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 159


>gi|254392737|ref|ZP_05007910.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294811849|ref|ZP_06770492.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440412|ref|ZP_08215146.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706397|gb|EDY52209.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324448|gb|EFG06091.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFK--KRSSAARNLTERE 178
           +R G     Y     E L  A   +   H     +V    L   +    +     LTERE
Sbjct: 98  LRAGASGYVYKDIDPEALAGAIRSVHAGHVLLQPEVAGALLAQEEQGGGTGRGSTLTERE 157

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212


>gi|56751843|ref|YP_172544.1| transcriptional regulator [Synechococcus elongatus PCC 6301]
 gi|81301073|ref|YP_401281.1| LuxR family transcriptional regulator [Synechococcus elongatus PCC
           7942]
 gi|56686802|dbj|BAD80024.1| transcriptional regulator [Synechococcus elongatus PCC 6301]
 gi|81169954|gb|ABB58294.1| transcriptional regulator, LuxR family [Synechococcus elongatus PCC
           7942]
          Length = 91

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             +  L+ERE   + L   G T++EIA +L +S  TV+ ++ +   K    NR+  +  A
Sbjct: 8   PVSGALSERELQIVDLVAAGLTNQEIATRLDISKRTVDNHISNILTKTGTDNRVALVRWA 67

Query: 229 IRFGYIC 235
           +++G +C
Sbjct: 68  LQWGKVC 74


>gi|320011731|gb|ADW06581.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 223

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +  + L   + + A G      +    L            +    A  
Sbjct: 97  LRAGASGFLLKDAPAVELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEEPVPDALH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|297582619|ref|YP_003698399.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141076|gb|ADH97833.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 208

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            +    ++       LT+RE   L L G+G +++EIA+ L ++V TV  ++     KLD 
Sbjct: 133 MYRRFQER--PKHDVLTKREREVLALLGEGKSNQEIADTLFIAVKTVKTHVSHILAKLDL 190

Query: 219 VNRIQAIAKAIRFGY 233
            +R QA   A +   
Sbjct: 191 QDRTQAAIYANKHQL 205


>gi|220905737|ref|YP_002481048.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219862348|gb|ACL42687.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425]
          Length = 100

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 40/64 (62%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L++RE   ++L   G ++++IAEKL +S  TV+ ++ +   K    NR+  +  A+++
Sbjct: 10  QSLSDRELQVIELIAAGLSNQQIAEKLEISKRTVDNHVSNILEKTKTGNRVALVRWAVQW 69

Query: 232 GYIC 235
           G +C
Sbjct: 70  GKVC 73


>gi|218440594|ref|YP_002378923.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218173322|gb|ACK72055.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424]
          Length = 90

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ERE   ++L  +G T+ EIA +L +S  TV+ ++ +   K    NR++ +  A+++G
Sbjct: 11  SLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQWG 70

Query: 233 YIC 235
            +C
Sbjct: 71  KVC 73


>gi|320158939|ref|YP_004191317.1| nitrate/nitrite response regulator protein [Vibrio vulnificus
           MO6-24/O]
 gi|319934251|gb|ADV89114.1| nitrate/nitrite response regulator protein [Vibrio vulnificus
           MO6-24/O]
          Length = 204

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156
           L       + +   V         ++              + ++E     +        V
Sbjct: 65  LRADGCEASIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVELLEKAHLGDKAYSSV 124

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L   ++ +     LTERE   LQ    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 125 VAKYLLQREENTDVFDELTERERQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 184

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 185 KVPSRTAATVLFLER 199


>gi|302543091|ref|ZP_07295433.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460709|gb|EFL23802.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 34/66 (51%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L+L  DG ++ EIA  L +S  TV  ++     KLD  +R+QA+  
Sbjct: 152 TPHDNPLTPRELEVLRLIADGRSNSEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVY 211

Query: 228 AIRFGY 233
           A R G 
Sbjct: 212 AYRQGL 217


>gi|270293402|ref|ZP_06199611.1| DNA-binding response regulator [Streptococcus sp. M143]
 gi|270278251|gb|EFA24099.1| DNA-binding response regulator [Streptococcus sp. M143]
          Length = 199

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|229165197|ref|ZP_04292990.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621]
 gi|228618295|gb|EEK75327.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +        + LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R
Sbjct: 139 AVECNPPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDR 198

Query: 222 IQAIAKAIRFG 232
            QA   A+R+G
Sbjct: 199 TQAAIYAVRYG 209


>gi|323491776|ref|ZP_08096951.1| response regulator [Vibrio brasiliensis LMG 20546]
 gi|323313911|gb|EGA67000.1| response regulator [Vibrio brasiliensis LMG 20546]
          Length = 210

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L       A +   V         ++              + ++E      Q        
Sbjct: 71  LRADGCDAAIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVELLRVSLQGNKAYSRE 130

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +LE  +  +     LT+RE   L+    G+ +++IA+ L +S  TV  ++ S   KL
Sbjct: 131 VAKYLEDRENSTDIFDELTDRELQILKEVAKGFRNKQIADTLFISESTVKVHMKSLLKKL 190

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 191 QVPSRTAATVLYLER 205


>gi|239931777|ref|ZP_04688730.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 182

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 151 GACYQVITDFLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           G    V+ ++  L  + +  A+         LTERET  L+L   G + ++IAE+L +S 
Sbjct: 89  GLAGLVLGEYRRLASEPAGPAQGDDGSKAPRLTERETEVLRLVAKGLSYKQIAERLVISH 148

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 149 RTVQNHVQNTLGKLQLHNRVELVRYAIERGL 179


>gi|148239235|ref|YP_001224622.1| two component system response regulator [Synechococcus sp. WH 7803]
 gi|147847774|emb|CAK23325.1| Possible two component system response regulator [Synechococcus sp.
           WH 7803]
          Length = 227

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L++   G T++EIA  L +S  TV  ++ S   K+   +R QA+ KAI+ 
Sbjct: 166 PELSDREMEVLKVLSCGMTNKEIAVTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKA 225

Query: 232 GY 233
           G 
Sbjct: 226 GI 227


>gi|108803013|ref|YP_642950.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764256|gb|ABG03138.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 212

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
              +GY++  +    L   +     G           L ++ R+     L+ RE   L L
Sbjct: 101 AGASGYLLKDAPREELFAAIRAAMAGESPLDPAVASRLMRRVRTPPENALSGREIEVLDL 160

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++ EIA +L +S  TV  +L     KL   +R  A+  AI+ G I
Sbjct: 161 VAQGASNREIARQLWISETTVKTHLLHIYEKLGVADRTAAVTAAIKRGII 210


>gi|16331237|ref|NP_441965.1| response regulator like-protein [Synechocystis sp. PCC 6803]
 gi|1001413|dbj|BAA10035.1| response regulator like protein [Synechocystis sp. PCC 6803]
          Length = 89

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 40/66 (60%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +L++RE   L L   G T++E++E+L +S  TV+ ++ +   K +  NR++ +  A+
Sbjct: 8   PPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWAL 67

Query: 230 RFGYIC 235
           ++G +C
Sbjct: 68  QWGKVC 73


>gi|332668435|ref|YP_004451223.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332337249|gb|AEE54350.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 207

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLA 185
             +GYV+   +   L   +   A G  Y  +     +  + SS     LT RE   L L 
Sbjct: 97  GASGYVLKNVDKEELTEAIRQVAAGRIYFSMEAAAAITGQSSSPVVPILTSREKEVLALI 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G T++EIA+ L +S  TV+++  +   K    N    I  AI  G I
Sbjct: 157 AEGLTNKEIADHLFISPLTVDSHRKNLLAKFAVKNTASLIKLAIEHGVI 205


>gi|123441372|ref|YP_001005359.1| LuxR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088333|emb|CAL11124.1| LuxR-family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 240

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 19/188 (10%)

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +        + D  L      ++P  W        I         +      F G  F
Sbjct: 53  WFEFYTQNNFQFTDPVLLMAAHCIMPFSWDE-----KIIFRWPKLFDMAKEYDVFNGYTF 107

Query: 121 PVRLGFHKNGYVIFTSE-FLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAA--- 171
            +    +    +   ++       E                       L+K  ++ +   
Sbjct: 108 VLHDQNNNLTVLSLMTDKDCNEDIEEKFGKDKGNIQLLLMSTHERLTSLYKDLNNTSIFY 167

Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                   + RE   +  A  G   +EIA  LG+    V  ++G    KL   N   AI+
Sbjct: 168 KVNRNEIFSTRENEIIYWASVGKAYQEIALILGIKPTAVKHHMGKVVRKLGVTNAKHAIS 227

Query: 227 KAIRFGYI 234
            A+    I
Sbjct: 228 LAVELQLI 235


>gi|311031417|ref|ZP_07709507.1| germination protein [Bacillus sp. m3-13]
          Length = 64

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 2   LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 60


>gi|291301217|ref|YP_003512495.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570437|gb|ADD43402.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 235

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 41/108 (37%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               G++    +   LA  +   A G           +          LT RE   L L 
Sbjct: 99  AGAAGFLYKDIDPDSLAQAIRSVADGQVIFAREAVTAMTAPAPGPVAALTAREREVLALV 158

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             G ++ EIA++L ++  TV  +L S   KL   +R QA   A+  G 
Sbjct: 159 AAGRSNREIAKQLSVAEKTVKTHLSSLFRKLGVADRTQAALYAVTHGM 206


>gi|212716361|ref|ZP_03324489.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660614|gb|EEB21189.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM
           16992]
          Length = 228

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 166 DRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 225

Query: 232 GYI 234
             +
Sbjct: 226 RIV 228


>gi|87309494|ref|ZP_01091629.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
 gi|87287802|gb|EAQ79701.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
          Length = 210

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETS 180
             NGYV+       L + +   A+G       +   +    ++          LT+RE+ 
Sbjct: 97  GANGYVLKGDPRDRLVDAIHTAANGESAWTRDELRRVTGALATPRLNADVEVPLTQRESE 156

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+    G T++EIA+ L +S  TV  ++     K+   +R QA   A+R G +
Sbjct: 157 VLRQLALGLTNKEIAQALHISYETVKEHVQHILRKVGVSDRTQAAVWAVRKGLV 210


>gi|258510399|ref|YP_003183833.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477125|gb|ACV57444.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +            S  A  L+ RET  L L   GYT+ E+A+ L +SV TV  +  
Sbjct: 127 YLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQ 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               ++   +R   +  A + G +
Sbjct: 187 HIMRRIGLHSRAALVRYAYQNGLV 210


>gi|254391866|ref|ZP_05007060.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294816214|ref|ZP_06774857.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326444547|ref|ZP_08219281.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197705547|gb|EDY51359.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328813|gb|EFG10456.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 244

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               + +     LT RE    +L   G  +  IA ++ +S  TV  ++ +   KL   +R
Sbjct: 166 AAGTRPTGVPDGLTPREREVWRLIAAGLDNTGIAAEMFISPSTVKNHITALFAKLQVRDR 225

Query: 222 IQAIAKAIRFGYI 234
            QA+  A   G +
Sbjct: 226 AQAVIAAYEAGLV 238


>gi|148977018|ref|ZP_01813664.1| response regulator [Vibrionales bacterium SWAT-3]
 gi|145963678|gb|EDK28939.1| response regulator [Vibrionales bacterium SWAT-3]
          Length = 210

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + +IE     +        V+  +L     
Sbjct: 81  VILTVSDSPADIEAIVKAGADGYLLKDTEPDELIELLKQAHSGDKAYSSVVARYLNDAGS 140

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+     LTERE   LQ    GY +++IA+ L +S  TV  ++ S   KL   +R  A  
Sbjct: 141 RNDIFDQLTEREMQILQEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATV 200

Query: 227 KAIRF 231
             +  
Sbjct: 201 LYLER 205


>gi|260886222|ref|ZP_05897485.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC
           35185]
 gi|330839784|ref|YP_004414364.1| two component transcriptional regulator, LuxR family [Selenomonas
           sputigena ATCC 35185]
 gi|260863941|gb|EEX78441.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC
           35185]
 gi|329747548|gb|AEC00905.1| two component transcriptional regulator, LuxR family [Selenomonas
           sputigena ATCC 35185]
          Length = 223

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S +  LT RE   L     G+++++IA+ L +S  TV  +L +   KL+  +R QA+ 
Sbjct: 153 RESRSERLTSREMDVLSCIAKGFSNQDIAQALFVSEKTVKNHLTNIFRKLNVNDRTQALI 212

Query: 227 KAIRFGY 233
             ++   
Sbjct: 213 YVLKHKI 219


>gi|182437898|ref|YP_001825617.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778534|ref|ZP_08237799.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466414|dbj|BAG20934.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658867|gb|EGE43713.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 226

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   + L   G ++ EIA +L LS  TV  ++G    KL+  +R+Q +  A   G
Sbjct: 158 KLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETG 217

Query: 233 YI 234
            +
Sbjct: 218 LV 219


>gi|288940789|ref|YP_003443029.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288896161|gb|ADC61997.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 238

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           E  G   + +          S  A +LT RE   L    +G +++ IA +LG+S  TV  
Sbjct: 126 ELTGVLARAVRGESTPVPVVSGGAADLTPREQEILCHLAEGQSNKTIARELGISEGTVKL 185

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ +   KLD  +R++A   A+  G 
Sbjct: 186 HVKAILRKLDVHSRVEAAVIAVERGL 211


>gi|189439534|ref|YP_001954615.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189427969|gb|ACD98117.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 248

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 242

Query: 229 IRFGYI 234
                +
Sbjct: 243 YENHLV 248


>gi|170782478|ref|YP_001710811.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157047|emb|CAQ02220.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 212

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFH-------KNGYVIFTSEFLMLANEVIIEAHGACYQ 155
             +         AG + F V+           +       +    +   +I         
Sbjct: 70  FDLDEYAFAGLRAGASGFLVKDTRPEHLMEAIRAVADGDAAISPRVTRRMIELLGPTMPA 129

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                           R LT RE   L    +G T++EIA +L LS  TV  ++G    K
Sbjct: 130 TGGAAGTGEGAADPRLRPLTARELEVLTALAEGLTNQEIAGRLFLSESTVKTHVGRVLAK 189

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L+  +R+QA+  A   G +
Sbjct: 190 LEVRDRVQAVILAYDCGLV 208


>gi|149012406|ref|ZP_01833437.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147763462|gb|EDK70398.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
          Length = 199

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +        LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGGKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|326381697|ref|ZP_08203391.1| putative two component system response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199944|gb|EGD57124.1| putative two component system response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 213

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 1/103 (0%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +  S   +     ++ A     Q+                 LT RE   L  A  G ++
Sbjct: 112 FLLASVRAVADGSQVVAASAT-RQLFERHGSRNADPGPEYDTLTAREREILVRAASGLSN 170

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA    LS  TV  ++     KL   +R+Q +  A   G +
Sbjct: 171 AEIASAEFLSEATVKTHVSRILAKLSLRDRVQLVVYAYEHGLV 213


>gi|300087810|ref|YP_003758332.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527543|gb|ADJ26011.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 228

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               +  + A  LTERE   L+LA  G ++ + AE+L LS  TV  +L +   KL+  +R
Sbjct: 150 REDTESDAPAHALTEREMEVLRLAAKGVSNRDTAEQLYLSSRTVQTHLSNIFKKLNVASR 209

Query: 222 IQAIAKAIRFGY 233
            +AI   ++ G+
Sbjct: 210 TEAILYGLKRGW 221


>gi|197251701|ref|YP_002148042.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197215404|gb|ACH52801.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 248

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ ++    LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDFLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|23465503|ref|NP_696106.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|239621956|ref|ZP_04664987.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|23326161|gb|AAN24742.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|239515147|gb|EEQ55014.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 248

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
             + +    GA                     LT+RE   L     G +++EIA+KL +S
Sbjct: 156 EGDFMAANVGAHGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFIS 215

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + TV  ++     K++A +R+QA+  A     +
Sbjct: 216 LPTVKTHVAHILAKINARDRVQAVVFAYENHLV 248


>gi|320010051|gb|ADW04901.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 224

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   + L   G ++ EIA +L LS  TV  ++G    KL   +R+Q +  A   
Sbjct: 155 EKLTGREREVMMLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|329940979|ref|ZP_08290259.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300273|gb|EGG44171.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 255

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 72/237 (30%), Gaps = 40/237 (16%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +       +   R+          LD             
Sbjct: 39  VDDHPMWRDAVARDLAESGFDVVATAGDGEQAVRRARAVAPDVLVLDLN--------LPA 90

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   ++ +     V +       A +   V+ G      V 
Sbjct: 91  KPGVQVCKE--------------LVGAQPAPRVLVLSASGEHADVLEAVKSGATGY-LVK 135

Query: 134 FTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSA-----------ARNLTE 176
             S   ++       A       G    V+ ++  L  + + A           A  LTE
Sbjct: 136 SASTEELVDAVRRTAAGDPVFTPGLAGLVLGEYRRLAAEPAPAPESGEAGETARAPRLTE 195

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RET  L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 196 RETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 252


>gi|312132068|ref|YP_003999408.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311908614|gb|ADQ19055.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 204

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
               + ++  V+ G         + E +    E  I    +    ++  L++ ++     
Sbjct: 86  YNERSYVSQMVQAGASGYLLKSASREEM----EEAILTVSSGKLYMSLELDISREEIKKM 141

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L  +G T+ +IAE+L +S HTV+++  +   K +  N    I  A + 
Sbjct: 142 PVLTTREREVLVLIAEGLTNPQIAERLFVSPHTVDSHRKNLLTKFEVNNTAGLIKWAAKN 201

Query: 232 GYI 234
           G I
Sbjct: 202 GLI 204


>gi|306828869|ref|ZP_07462061.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304429047|gb|EFM32135.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 199

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KL+A NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLNAGNRTEAANIATESGWL 199


>gi|312196093|ref|YP_004016154.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227429|gb|ADP80284.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 220

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 166 KRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           + +  A    LTERE   L L   G ++ EIA ++ ++  TV  ++     KL+  +R+Q
Sbjct: 145 RITPPADLQTLTEREREVLVLIARGLSNTEIAARIYVTEGTVKTHVSRLLAKLNLRDRVQ 204

Query: 224 AIAKAIRFGYI 234
           A+  A   G +
Sbjct: 205 AVVYAYESGLV 215


>gi|260436694|ref|ZP_05790664.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
 gi|260414568|gb|EEX07864.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
          Length = 92

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                   +L+ RE   ++L  +G T++EIA++L +S  TV+ ++ +   K  + NR+  
Sbjct: 5   DGADPLEISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVAL 64

Query: 225 IAKAIRFGYIC 235
           +  A+  G IC
Sbjct: 65  LNWAMDNGKIC 75


>gi|229171060|ref|ZP_04298658.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3]
 gi|228612390|gb|EEK69614.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3]
          Length = 213

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                + LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R QA  
Sbjct: 143 PPEQLKQLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAI 202

Query: 227 KAIRFG 232
            A+R+G
Sbjct: 203 YAVRYG 208


>gi|288572798|ref|ZP_06391155.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568539|gb|EFC90096.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 217

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G ++ EI+ K+ LS  TV  ++     KLD  +R QA   A R G 
Sbjct: 152 LTDREKEVLFWLAQGLSNLEISAKMNLSEKTVKNHVSHILKKLDLRDRTQAAILAWRVGI 211


>gi|197301027|ref|ZP_02663122.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197288964|gb|EDY28335.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|322669031|gb|EFY65182.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
          Length = 248

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     ++  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ ++ A  LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLASILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|17232908|ref|NP_489446.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134898|dbj|BAB77454.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 237

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  DG ++  IAEKL +SV TV  ++ +   KL   +R Q   +A+R G
Sbjct: 175 PLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIAVRALRAG 234

Query: 233 YI 234
            +
Sbjct: 235 LV 236


>gi|296268935|ref|YP_003651567.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091722|gb|ADG87674.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 221

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V+ + + ++  +                 L   +        LT RE   L L   G ++
Sbjct: 117 VVHSGDAVVAPSTTRRLLDRFAAH-----LPDGQAGRPELDALTAREREVLILVAKGLSN 171

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EIAE+L L+  TV  +LG    KL   +R QAI  A   G +
Sbjct: 172 QEIAERLHLAEATVKTHLGRVLAKLRLRDRAQAIVYAYETGLV 214


>gi|239942209|ref|ZP_04694146.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988676|ref|ZP_04709340.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445663|ref|ZP_06585053.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348610|gb|EFE75514.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 226

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   + L   G ++ EIA +L LS  TV  ++G    KL+  +R+Q +  A   G
Sbjct: 158 KLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETG 217

Query: 233 YI 234
            +
Sbjct: 218 LV 219


>gi|239906056|ref|YP_002952795.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239795920|dbj|BAH74909.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 218

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               ++       ++  SA  +LT RE   ++L  +G +++E+A  L +SV T   + GS
Sbjct: 135 ISRSLLAKTPRAEEESHSAYDSLTPREREVMRLVVEGLSNKEVAAALEISVKTAEHHRGS 194

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   N ++ +  A + G I
Sbjct: 195 LMRKLGMQNSVELVRYATKLGLI 217


>gi|237650688|ref|ZP_04524940.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821211|ref|ZP_04597056.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 199

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +        LTE+E + L+    G++++EIA+KL LS 
Sbjct: 108 ADLMQTLHTVLEGGKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|219683473|ref|YP_002469856.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621123|gb|ACL29280.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|289178826|gb|ADC86072.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 234

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +        LTERE   L     G +++EIA+KL +S+ TV  ++     K++A +R+
Sbjct: 163 AAEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRV 222

Query: 223 QAIAKAIRFGYI 234
           QA+  A     +
Sbjct: 223 QAVVFAYENHLV 234


>gi|218289507|ref|ZP_03493735.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240375|gb|EED07557.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 210

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 39/79 (49%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            ++    E   + +     LT RE+  L+    G +++EIA++L +S  TV A+L     
Sbjct: 131 AMLKALQEPDAEEAKRLAQLTPRESQILRQVTKGLSNKEIADRLQISERTVKAHLQHIFD 190

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   +R  A   AIR G+
Sbjct: 191 KLGVQDRTSAAVLAIRHGW 209


>gi|149004513|ref|ZP_01829227.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147757571|gb|EDK64593.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
          Length = 189

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +        LTE+E + L+    G++++EIA+KL LS 
Sbjct: 98  ADLMQTLHTVLEGGKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 157

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 158 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 189


>gi|291483274|dbj|BAI84349.1| hypothetical protein BSNT_01381 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 220

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LTERE   L   G G  ++EIAEKL ++  TV  ++ +   KL   +R QA   ++R+G
Sbjct: 158 LTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216


>gi|78356024|ref|YP_387473.1| two component LuxR family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218429|gb|ABB37778.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 223

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           SS+   LT RE    QL  +GY + EIAE L +SV TV  +  +   KL   +  +  A 
Sbjct: 150 SSSWETLTPREQEIFQLVAEGYKNREIAEMLVVSVKTVEKHRSNLMQKLGVHSAAELRAL 209

Query: 228 AIRFGYI 234
           A+  G I
Sbjct: 210 ALERGII 216


>gi|27382386|ref|NP_773915.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355557|dbj|BAC52540.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 123

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 43/88 (48%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +       Q     +    +       LT+RE   L L  +G +++ IA +LG+SVHTV 
Sbjct: 34  LRLAAPGEQAAATIVARDPRSMPEDIALTQRELDVLALMAEGASNKMIARQLGISVHTVK 93

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++GS   KLDA  R  A+A A R G I
Sbjct: 94  FHVGSLLDKLDATGRTDAVAHAARRGVI 121


>gi|315080757|gb|EFT52733.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
          Length = 228

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175
           L    +G+++  ++   L   +   A G           +  +          S A  LT
Sbjct: 92  LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|302866747|ref|YP_003835384.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569606|gb|ADL45808.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 225

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                         +  +A  +LT RE   L+L   G ++ EIA+ L +   TV  ++  
Sbjct: 139 ISTFARPGAAPPDPRHDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSR 198

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+QA+  A   G +
Sbjct: 199 VLAKLGLRDRVQAVVFAYEHGVV 221


>gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 234

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 70/226 (30%), Gaps = 11/226 (4%)

Query: 14  LQELSPRLHLIQNRIKARNFAL-YTINSALDFP--RRQQLICELHNYDLDSGDIPNILIE 70
           + +       +Q  ++  NF +    N    +   ++      + +  +   D    L +
Sbjct: 12  VDDEPGLREAVQAYLEDSNFNVDVASNGREGWELLQKNPPDLVISDIMMPQVDGYQFLSQ 71

Query: 71  TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
              D          +P+++   + +  + +          +     P   +A    L   
Sbjct: 72  MREDPRFKA-----MPVVFLTAKGMTTDRIQGYQAGCDAYISKPFDPDELVAIVTNLLVR 126

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +                 +          +T    + +  S    +LT RE S L L   
Sbjct: 127 RAAAKESGENTETPDITALANQMARIESFLTGRSAIAQSPSPIKIDLTPREQSVLDLVAQ 186

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G  ++EIA +L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 187 GLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 232


>gi|317049512|ref|YP_004117160.1| LuxR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951129|gb|ADU70604.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 262

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           I  ++N   +  +          D  +    + +   IW +  +        ++ +    
Sbjct: 57  ILVINNISDEFANEYLENKYQNIDPVVITALNRVTSFIWDANLKINSHWPMDKVFIWKSY 116

Query: 111 GLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAH--------GACYQVITDFL 161
             L   G  F +     +     ++  ++LM     +IE H           ++++    
Sbjct: 117 SFL--CGHTFVLHDYHNNMATLSLYYDKYLMADVGDMIETHKNDFQGILLDIHEMLLQVY 174

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              ++ ++A   L+ RE   L  +  G T  E+AE L L+V T+  ++G    KL   N 
Sbjct: 175 RKSEEVAAANTLLSTREAEILYWSSTGKTYAEVAEMLQLTVSTIKFHMGKTVKKLGVKNA 234

Query: 222 IQAIAKAIRFGYI 234
             AI+ A     I
Sbjct: 235 KHAISLASELNLI 247


>gi|226310364|ref|YP_002770258.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093312|dbj|BAH41754.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 24/133 (18%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAH--------GACYQVITDFLELFKKRSSAA----- 171
                GY++          ++I  AH            + + + L+  +K          
Sbjct: 103 RAGAVGYMLKD-SDSQDMLDLIRRAHQGEALFYTATAAKALAEVLQFQQKNYEPDSDADC 161

Query: 172 ----------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                       LT+RE   L+    G  +++IA+ L +S  TV  ++     K+   +R
Sbjct: 162 DSTLPPLVMFDQLTDRERDVLEQLSYGKRNDQIAQHLLISGGTVKTHIHRILQKMGVEDR 221

Query: 222 IQAIAKAIRFGYI 234
            QA+AKAIR+  +
Sbjct: 222 TQAVAKAIRYKIV 234


>gi|329940703|ref|ZP_08289983.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329299997|gb|EGG43895.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 213

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERE 178
           +R G     Y     + L  A   +   H      +   L   +    A   A  LTERE
Sbjct: 97  LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDTGPAQGRAGTLTERE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 210


>gi|323139047|ref|ZP_08074106.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC
           49242]
 gi|322395707|gb|EFX98249.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC
           49242]
          Length = 261

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 1/223 (0%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++  EL   L  I + +         + S+ +            ++            + 
Sbjct: 39  ATADELGDSLLEITSPLGVEAIVAGVLPSSANHHMDHGDEKTPGHWPALLTREALAQNKL 98

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             +  +             +   E                      I FP+         
Sbjct: 99  QSELLIDLEKQTTHIFTRDAATGEASHLRFVYARDNDAEAWPDGERIVFPIVTVADMQCG 158

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
             F  E L      +              +++  +   +   LT+R++  L+ A  G T 
Sbjct: 159 FAFLGENLSRDETAMEILSFIANYAFARMVKVD-RMCKSKPKLTDRQSEVLKWAALGKTD 217

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA  L +S HTV+ Y+  +   L+AVNR  AI  A+R+G I
Sbjct: 218 WEIAAILDVSQHTVDKYMRQSKEALNAVNRTAAIVLAMRYGLI 260


>gi|289425275|ref|ZP_06427052.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289154253|gb|EFD02941.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|313792254|gb|EFS40355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313838624|gb|EFS76338.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|315078129|gb|EFT50180.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|327453031|gb|EGE99685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 218

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175
           L    +G+++  ++   L   +   A G           +  +          S A  LT
Sbjct: 92  LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLT 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|258651449|ref|YP_003200605.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554674|gb|ACV77616.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 198

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 51/156 (32%), Gaps = 2/156 (1%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
             G  P     I  +  + S  + + RL         I F            I       
Sbjct: 42  RFGRQPSDVVLIGTQRALTSGIEATRRLLAVHPSAVVIVFGSPDDTASIAAAIACGARGF 101

Query: 141 LANEVII--EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           L  +             + T  L   +        LTERE   L+    G ++ EI  +L
Sbjct: 102 LRWDATQPEIVAALADTLTTPRLPALRDTPDGEAPLTEREMQVLRGMSQGQSNGEIGREL 161

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  TV  +      KL A +R QA+A   R G++
Sbjct: 162 FLSEDTVKTHARRLFRKLGARDRAQAVALGFRRGFV 197


>gi|228912956|ref|ZP_04076601.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983471|ref|ZP_04143682.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229119881|ref|ZP_04249141.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201]
 gi|228663628|gb|EEL19208.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201]
 gi|228776261|gb|EEM24616.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846694|gb|EEM91701.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 214

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R QA   
Sbjct: 145 PEQLAQLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIY 204

Query: 228 AIRFGY 233
           A+R+G 
Sbjct: 205 AVRYGI 210


>gi|116694705|ref|YP_728916.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529204|emb|CAJ95551.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 920

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLANEVIIEA 149
           + T   +   + +          G    +      +         + +   L    +   
Sbjct: 775 QRTGDGAHALVVMGEALRFGAAEGF-VRIFADEGDDVRRLVADACSRQSASLPAPYVERL 833

Query: 150 HGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
             AC Q  ++      + + AA    LT +E   LQL  +GY++  +AE+L +S  TV  
Sbjct: 834 LQACGQAGSEQAAGTGRPAPAALVEPLTPKEQKVLQLLAEGYSNVAMAERLFVSETTVRT 893

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L + + KL A NR QA+A A + G +
Sbjct: 894 HLRNISAKLHASNRTQAVAIARQLGLL 920


>gi|85858979|ref|YP_461181.1| two-component response regulator [Syntrophus aciditrophicus SB]
 gi|85722070|gb|ABC77013.1| two-component response regulator [Syntrophus aciditrophicus SB]
          Length = 217

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   LQL  +G ++++IA  L +SV TV  +  + T KL   +  + I  AIR G
Sbjct: 152 ELTPRERELLQLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIKYAIREG 211

Query: 233 Y 233
            
Sbjct: 212 L 212


>gi|260430667|ref|ZP_05784639.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418108|gb|EEX11366.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157]
          Length = 204

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                A+ LTERE   L+   +G +++EIA  L LS  T+  ++ +   K+   NR QA 
Sbjct: 136 DTHPMAKKLTERERQVLKGLTEGKSNKEIARDLDLSEPTIKLHVKTLYRKVGVSNRTQAA 195

Query: 226 AKAIRFGY 233
             A   G 
Sbjct: 196 MAAREAGL 203


>gi|212716971|ref|ZP_03325099.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660256|gb|EEB20831.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM
           16992]
          Length = 248

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
             + +    GA                     LT+RE   L     G +++EIA+KL +S
Sbjct: 156 EGDFMAANVGAHGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFIS 215

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + TV  ++     K++A +R+QA+  A     +
Sbjct: 216 LPTVKTHVAHILAKINARDRVQAVVFAYENHLV 248


>gi|219849447|ref|YP_002463880.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543706|gb|ACL25444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus aggregans DSM 9485]
          Length = 917

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L+L  +G ++ EIA  L ++V TV +++ +   KL   +R QA+A+  R 
Sbjct: 854 EPLSQREIEVLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRTQAVARGRRL 913

Query: 232 GYI 234
           G I
Sbjct: 914 GLI 916


>gi|315612509|ref|ZP_07887422.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315490|gb|EFU63529.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 199

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|134103142|ref|YP_001108803.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003915|ref|ZP_06561888.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915765|emb|CAM05878.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 151

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 2/142 (1%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGAC 153
           +  + +  + + RL         I F            I       L  +    E   A 
Sbjct: 9   QRAVPNGVEATRRLVSAHPQANVIVFGAPDDAGSIAAAIAGGARGYLRWDASRPELVAAL 68

Query: 154 YQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              +        ++ S     LTERE   L+    G ++ +I  +L LS  TV  +    
Sbjct: 69  AHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRL 128

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R QA+A   R G +
Sbjct: 129 FRKLGVRDRAQAVAHGFRRGLV 150


>gi|326332943|ref|ZP_08199200.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325949301|gb|EGD41384.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 38/84 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V      L +  S     LTERE   L+L  +G+++ EIA +L +S  TV  +  
Sbjct: 135 AMSALVRDYLDRLNRGESLPRTVLTEREDEVLKLIAEGHSTREIARELTISYKTVERHRE 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R Q    AIR G I
Sbjct: 195 NILAKLGLRDRTQVTRYAIRAGLI 218


>gi|269124386|ref|YP_003297756.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309344|gb|ACY95718.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 222

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     LTERE   ++L   G +++EIA +L LS  T   ++     KL   +R Q
Sbjct: 145 APAPDPRLNALTEREREVMRLVAAGLSNDEIAGRLVLSPATAKTHVSRIMSKLGVRDRSQ 204

Query: 224 AIAKAIRFGYI 234
            +  A   G +
Sbjct: 205 LVVLAYESGMV 215


>gi|329922778|ref|ZP_08278313.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941920|gb|EGG38204.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 200

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              N Y++  S    LA  +     G           + +  S     LTERE   L L 
Sbjct: 94  AGANAYLLKDSPSEELAASIRSIMAGRRIYASE---LVDEAYSGEENPLTEREKEVLGLI 150

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  ++EIA +L ++  TV  Y+     KL   NRI+AI +    G+
Sbjct: 151 ADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEAITRFKEKGW 198


>gi|302873825|ref|YP_003842458.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307689930|ref|ZP_07632376.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302576682|gb|ADL50694.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 220

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 110 GGLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
              L   G+A   R      +                ++        +     E  +  +
Sbjct: 91  DENLIREGLALGARGYLLKDSTREELIRTVEAAIRGELLLQPEISGIIFGAKKESKESNN 150

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    +TERE   LQ    G TS+EIA  +G++  TV A+L +   KL   +R QA+A A
Sbjct: 151 TFNAGITERELFVLQAVARGCTSKEIAVDMGIAERTVKAHLTNIYSKLKVESRPQAVAVA 210

Query: 229 IRFGYI 234
           I  G I
Sbjct: 211 IEQGII 216


>gi|75812491|ref|YP_320110.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705247|gb|ABA24921.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 223

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + R+  +  LT RE   L L   G T++EIA +L ++  TV  ++ +   KL+  +R QA
Sbjct: 151 ENRAKLSNPLTGREQEILSLLAAGKTNQEIAHQLCIAPGTVRVHIHAILQKLEVSDRTQA 210

Query: 225 IAKAIRFGYI 234
           +  A++   I
Sbjct: 211 VLVALQKQLI 220


>gi|121604753|ref|YP_982082.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593722|gb|ABM37161.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 262

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L+L   GYTS EI  +L +S  TVN ++ +   KL+   R QA++ A   
Sbjct: 200 EKLSEREKQVLKLVASGYTSTEIGSRLIISGQTVNTHIKNIYRKLNVRTRAQAVSFAASR 259

Query: 232 GY 233
           G 
Sbjct: 260 GL 261


>gi|86739638|ref|YP_480038.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86566500|gb|ABD10309.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 297

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 68/230 (29%), Gaps = 12/230 (5%)

Query: 9   KKSSSLQELSP-RLHLIQNRIKARNFALYTINSALDF--PRRQQLICELHNYDLDSGDIP 65
           +++SSL       L  +   +  R+ A +  +S        R               +  
Sbjct: 59  ERASSLASFRELALDGMARHLGYRHSAFFLGSSLETAFQDARPTGRGLALRLAGPYLERY 118

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV--RLEGGLLPFAGIAFPVR 123
             L      D L       L     ++ +  V E         R        A +   + 
Sbjct: 119 RELEALSNPDSLRSVRERGL----ATLDDLGVPERPEVRMRLERFLRAHGIHAKLLIRLF 174

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180
              +    V                      + + + L  + +       A  L+ RE  
Sbjct: 175 GPSNVGAVVSLLDSRPGAFGPRDRAVGAVLGRHLGNLLRFYIRADPGPSVAGKLSARERD 234

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            ++L  +G ++ ++AE L +S+ TV  +L  A V     NR Q      R
Sbjct: 235 VVRLVAEGRSNRQVAEALCISIDTVKHHLTHALVATGCTNRTQLAIAWQR 284


>gi|304399203|ref|ZP_07381070.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304353257|gb|EFM17637.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 215

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 16/143 (11%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY------- 154
           +L    L    + F V          +           M   +++   H A         
Sbjct: 72  QLREIALSGRVVVFSVSDNEEDVISALKRGADGYLLKDMEPEDLLKALHQAAAGQIVLSE 131

Query: 155 ----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                ++    E    ++     LT RE   LQL  DG T++ IA KL +S  TV  ++ 
Sbjct: 132 ALTPILVARLREAQPGQTRDINQLTRREREILQLISDGMTNKAIARKLDISESTVKVHVK 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               K++  +R++A   A++ G 
Sbjct: 192 YLLKKMNLKSRLEAAVWALQNGL 214


>gi|194735656|ref|YP_002116072.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711158|gb|ACF90379.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|322613521|gb|EFY10462.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621113|gb|EFY17971.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624177|gb|EFY21011.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628084|gb|EFY24873.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633204|gb|EFY29946.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636219|gb|EFY32927.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639557|gb|EFY36245.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647511|gb|EFY44000.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648694|gb|EFY45141.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653749|gb|EFY50075.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657855|gb|EFY54123.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663958|gb|EFY60157.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322672975|gb|EFY69082.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678034|gb|EFY74097.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681210|gb|EFY77243.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687860|gb|EFY83827.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323191760|gb|EFZ77011.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199648|gb|EFZ84738.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202605|gb|EFZ87645.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207908|gb|EFZ92854.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212540|gb|EFZ97357.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214977|gb|EFZ99725.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222707|gb|EGA07072.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224210|gb|EGA08503.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230535|gb|EGA14653.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235114|gb|EGA19200.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239153|gb|EGA23203.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244489|gb|EGA28495.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247104|gb|EGA31070.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253413|gb|EGA37242.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256280|gb|EGA40016.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262544|gb|EGA46100.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267360|gb|EGA50844.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269236|gb|EGA52691.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 227

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 18  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     ++  +     +                    I   +R G      +      + 
Sbjct: 70  SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ ++ A  LT +E   + +  +G +++ IA +L +
Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLASILTAKEREIVGMVCEGASNKLIARQLNI 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|312880693|ref|ZP_07740493.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
 gi|310783984|gb|EFQ24382.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
          Length = 211

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
               L     GYV+ TS    L   + + A G    + ++  E     +     ++ RE 
Sbjct: 91  VLASLKAGARGYVLKTSPAETLCRAIRVVAQG-GLFLDSEVAEAMGGDAFVPEPISPRER 149

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L  A  G +S+EIA KL +S  TV  +L S   K+ A N+ +A+  A+R+G +
Sbjct: 150 EVLVQAAQGLSSKEIAAKLYISERTVQTHLASIYDKVGAKNKTEAMLLALRYGLV 204


>gi|307705686|ref|ZP_07642533.1| DNA-binding response regulator [Streptococcus mitis SK597]
 gi|307620766|gb|EFN99855.1| DNA-binding response regulator [Streptococcus mitis SK597]
          Length = 199

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    LTE+E + L+    G +++EIA++L LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDASNR 186

Query: 222 IQAIAKAIRFGYI 234
             A   A   G++
Sbjct: 187 TDAANIAKESGWL 199


>gi|290958644|ref|YP_003489826.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648170|emb|CBG71278.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A    + A G   ++I +F  L     +  +     LTERET  L 
Sbjct: 109 DASADQLAEAVRVVAAGDALLAPGVTRRLIAEFSRLGTAPRAPLKERVGDLTERETEVLS 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA+ L ++  TV  ++G   VKL   +R QA   A   G +
Sbjct: 169 LIAQGLSNAEIAQSLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219


>gi|159901290|ref|YP_001547537.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894329|gb|ABX07409.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 208

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCL 182
           L     GY++  +    L + +   A G+ +       +L    S     +LT RE   L
Sbjct: 94  LRAGAKGYLLKDASADELVSAIQAVARGSTHLAPDIAAKLVAGVSNPQPESLTPRELEVL 153

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L G G ++ EIA +L +++ TV  ++ +   KL A NR +A++ A+R   I
Sbjct: 154 HLLGRGRSNGEIALELDIALRTVKVHVQNILGKLGATNRTEAVSIAVRQQLI 205


>gi|226860311|gb|ACO88865.1| transcriptional regulatory protein [Microbacterium sp. MA1]
          Length = 228

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS 168
             +     L     G+++  S    L   V                +V+  F    +++ 
Sbjct: 98  DDVLLSRVLRAGAAGFILKDSPAEALIWAVRAVVRDGAFLDPAVTERVLQGFRRAGREQV 157

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             A  LT+RE+  L+L   G T+ EIA  LG+S  TV +++     KLD  +R  AI  A
Sbjct: 158 PVAPELTDRESDVLRLIARGQTNTEIASTLGISSVTVKSHVNHIFTKLDLRDRAAAIVYA 217

Query: 229 IRFGYI 234
              G +
Sbjct: 218 FDHGLV 223


>gi|254382255|ref|ZP_04997616.1| two component system DNA binding response regulator [Streptomyces
           sp. Mg1]
 gi|194341161|gb|EDX22127.1| two component system DNA binding response regulator [Streptomyces
           sp. Mg1]
          Length = 210

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 51/109 (46%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    LA  V   A G         L L  +  + A  LT+RE   LQL 
Sbjct: 99  AGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLV 158

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++++I+++L LS  TV ++L     KL   +R  A+A A     I
Sbjct: 159 ADGLSNQQISKELFLSQATVKSHLVHIYAKLGVDSRTSAVATAATRRLI 207


>gi|62181634|ref|YP_218051.1| response regulator [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129267|gb|AAX66970.1| putative response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding domain [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
          Length = 227

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 18  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G H    +      + 
Sbjct: 70  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHHIIAGISLMR-DIP 128

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|302533688|ref|ZP_07286030.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442583|gb|EFL14399.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               +V    L     +S        LT+RE   L L  DG ++ EIA  L LS  TV  
Sbjct: 132 LLQPEVAEALLAAQDDQSGPGGRPGSLTDREREVLGLIADGRSNREIARTLVLSEKTVKT 191

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ +  +KLD  +R QA   A+R G 
Sbjct: 192 HVSNILMKLDLSDRTQAALWAVRHGI 217


>gi|113953858|ref|YP_731807.1| LuxR family transcriptional regulator [Synechococcus sp. CC9311]
 gi|113881209|gb|ABI46167.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CC9311]
          Length = 83

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   ++L  +G T++EIAE+L +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 4   SLSSREIEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDHG 63

Query: 233 YIC 235
            IC
Sbjct: 64  KIC 66


>gi|158312391|ref|YP_001504899.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158107796|gb|ABW09993.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 219

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +       ++  + A  LT+RE   L+   +G ++ EIA  L LSV TV  ++     KL
Sbjct: 135 LARRRVPDRELLTRADQLTDREAEVLRALAEGRSNTEIAAVLNLSVETVRTHVKRILSKL 194

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+  A R G++
Sbjct: 195 GVRDRTQAVVWAYRAGFV 212


>gi|218437802|ref|YP_002376131.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218170530|gb|ACK69263.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 228

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT+RE   LQ    G ++E+IA++L ++V TV A+L +   KL   NR QAI  A++ 
Sbjct: 163 LTKREKEVLQYLIQGLSNEQIAKQLYITVATVKAHLTAIFNKLGVKNRTQAIVAALKM 220


>gi|315503162|ref|YP_004082049.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315409781|gb|ADU07898.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 225

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                         +  +A  +LT RE   L+L   G ++ EIA+ L +   TV  ++  
Sbjct: 139 ISTFARPGAAPPDPRHDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSR 198

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+QA+  A   G +
Sbjct: 199 VLAKLGLRDRVQAVVFAYEHGVV 221


>gi|261867392|ref|YP_003255314.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412724|gb|ACX82095.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 209

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I              + ++       +        
Sbjct: 72  LRAEGVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIARGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L   +       +LT+RE   L+L   G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNLLLERQSAQEPIYSLTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A       
Sbjct: 192 NVHSRVAATVLYFEH 206


>gi|227547703|ref|ZP_03977752.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227080229|gb|EEI18192.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 212

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 45/109 (41%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   A G           L  + S+   +LT RE   LQL 
Sbjct: 104 AGAVGYLLKDAPPAELVAAVRSAARGDAALSQVVRTRLETRESTPRFSLTPRELEVLQLV 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EI  +L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 164 AGGSSNREIGHELMLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGML 212


>gi|163744865|ref|ZP_02152225.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381683|gb|EDQ06092.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 245

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 23/233 (9%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +   LQE+      I   ++   F  + I+ ++    +      L        D+P    
Sbjct: 8   RLEKLQEVGALWDGIVEALRQIGFT-HAIHISVGADFKDA--QFLSTIPDLYDDLPPE-- 62

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEE--TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
               D FL H  +    +            +  S    +   G    +A  A P+RL   
Sbjct: 63  ---DDPFLHHSCNSYEVLTIGQAFVHLYPDVTPSEHSLIARAGREGLYAAFAVPMRLKGS 119

Query: 128 KNGYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSSAAR-------NL 174
           +          +          ++  +    C  +     +L                 L
Sbjct: 120 ERFGGFIIGNGMEADEFKRTFNDIAEDLRLFCLLMHRRIEDLTGTTPLPLPEAPETFAKL 179

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + RE   + L   GY+ ++ A +  LS+HTV+ Y  S   KL   NR QA A 
Sbjct: 180 SPREAEVVNLLAHGYSRQQTAHRCDLSIHTVSDYAKSGYRKLGIRNRAQAAAL 232


>gi|21224466|ref|NP_630245.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256784341|ref|ZP_05522772.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289768220|ref|ZP_06527598.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|4007689|emb|CAA22374.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289698419|gb|EFD65848.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 219

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    LT RET  L+L  DG ++ EIA  L +S  TV  ++     KLD  +R+QA+  
Sbjct: 152 TARDIPLTPRETEVLRLIADGLSNSEIAAALVISPETVKTFVSRILTKLDLRDRVQAVVF 211

Query: 228 AIRFGYI 234
           A R G +
Sbjct: 212 AYRHGLV 218


>gi|307710890|ref|ZP_07647317.1| transcriptional regulatory protein degU [Streptococcus mitis SK321]
 gi|307617335|gb|EFN96508.1| transcriptional regulatory protein degU [Streptococcus mitis SK321]
          Length = 199

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G++++EIA+KL LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|269792412|ref|YP_003317316.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100047|gb|ACZ19034.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 227

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              ++++ F    ++R      LT RE   L     G  + EIA K+ LS  TV  ++  
Sbjct: 131 VAGKLLSTFNRRREER-DLLSRLTPREMEVLYWISQGLNNGEIARKMVLSEKTVKNHVSH 189

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KLD V+R QA   A + G 
Sbjct: 190 ILKKLDLVDRTQAAVFAWKRGL 211


>gi|254387068|ref|ZP_05002344.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345889|gb|EDX26855.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 216

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERE 178
           +R G     Y     + L  A   +   H      +   L     +  ++     LT+RE
Sbjct: 100 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAVALLTQDDQGPSSSRGGALTDRE 159

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L    DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 160 REVLSHIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGI 214


>gi|194444321|ref|YP_002042384.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402984|gb|ACF63206.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|322716118|gb|EFZ07689.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326624871|gb|EGE31216.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 227

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 18  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 70  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|159044888|ref|YP_001533682.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157912648|gb|ABV94081.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 220

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 9/126 (7%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD---------FLELFKKRS 168
           +   +          +       +  +V+ +      + +              L    +
Sbjct: 88  LILSMHDSAEYISTAMSHGARGYILKDVLTDEIRLAIEAVMRGETYMCTGASASLEPNTA 147

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE + L     G +++E+A  L +SV TV  +  +   KL   +       A
Sbjct: 148 DGREPLTSREQTILLQLASGKSNKEVAATLDISVRTVETHRKNIKRKLGISSTAGLTRYA 207

Query: 229 IRFGYI 234
           +  G +
Sbjct: 208 MEHGVL 213


>gi|114765847|ref|ZP_01444940.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541846|gb|EAU44883.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 204

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQL 184
               G++  T     L N V   A G  Y  +       +   +  A  L+ RE   L+ 
Sbjct: 95  AGAAGFLPKTLSAKSLVNAVRFMAMGEQYAPLDFMRAEEETEVNPLAEKLSPRELEVLEG 154

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              G +++EIA  L +   TV  ++ S   K++A NR  A   A   G 
Sbjct: 155 LTQGKSNKEIARDLDIREPTVKLHVKSLYRKINASNRTHAAMIAKEAGL 203


>gi|294635449|ref|ZP_06713937.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda
           ATCC 23685]
 gi|291091182|gb|EFE23743.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda
           ATCC 23685]
          Length = 202

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA-------HGACYQV 156
           L    +    I   V         ++              E ++         H    + 
Sbjct: 65  LRNEGVDARIIILTVSDARSDVYALVDAGADGYLLKDSEPETLLAQIHQAAEGHNVFSEA 124

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + ++L    + +    +LTERE   LQ    G ++++IA +L +S  TV  ++ +   KL
Sbjct: 125 VLNYLGTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNLLRKL 184

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 185 NVRSRVAATVL 195


>gi|282899592|ref|ZP_06307556.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195471|gb|EFA70404.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 97

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + R+     L++RE   + L   G T++EIA KL +S  TV+ ++ +   K    NR+ 
Sbjct: 4   SESRTPVT--LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVA 61

Query: 224 AIAKAIRFGYIC 235
            +  A+++G +C
Sbjct: 62  LVRWALQWGKVC 73


>gi|271962388|ref|YP_003336584.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505563|gb|ACZ83841.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  S    L       A G      +    L  + R+ A + L+ RE   L+L
Sbjct: 100 AGATGYLLKDSPREELLRGARAAARGESVLAPSVAARLMNRMRAPAPQLLSPRELEVLEL 159

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T+ E A +L ++  TV ++L +   KL   +R  A+ +A   G +
Sbjct: 160 VAAGNTNREAAVRLFITEATVKSHLLNIYTKLGVNDRAAAVTEAFNRGLL 209


>gi|226305875|ref|YP_002765835.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184992|dbj|BAH33096.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 220

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G ++ EIAE+L ++  TV  ++G    KLD  +R QA+  A   
Sbjct: 155 DALTPREREVLELIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYES 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|264677605|ref|YP_003277511.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262208117|gb|ACY32215.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 195

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L+L   G  + EI + + +S  TV+ ++ +   K+    R QA+  A+  
Sbjct: 133 EKLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLK 192

Query: 232 GYI 234
           G I
Sbjct: 193 GII 195


>gi|212638430|ref|YP_002314950.1| GerE family transcriptional regulator [Anoxybacillus flavithermus
           WK1]
 gi|212559910|gb|ACJ32965.1| Transcriptional regulator GerE family [Anoxybacillus flavithermus
           WK1]
          Length = 89

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 27  LTKREREVFELLLQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 85


>gi|167588259|ref|ZP_02380647.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 301

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 68/244 (27%), Gaps = 18/244 (7%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  A +      L                
Sbjct: 60  TLSHAQSTAERNRIVTSLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PATYRGDYV 117

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQS----------IQEETVIESSGQLSVRLEGGLLPFA 116
                  D          +PI+W            +   +V   +    ++        +
Sbjct: 118 RHSHHDVDPRTLGARVCNMPIVWDLQQLRRQHRQRVDGASVPSGALDGFLQTMQDDGMCS 177

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSA 170
           GI + + +   +   ++ FT+                 + G           +   R   
Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATVEQALSIGLSVHKFASPQLIATSRERT 237

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      +
Sbjct: 238 VNGLTPFEQELLIGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTSK 297

Query: 231 FGYI 234
              I
Sbjct: 298 LELI 301


>gi|37223196|gb|AAQ90192.1| LuxR [Vibrio cholerae]
          Length = 214

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 11/194 (5%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +++  L  +   +   +   Y +         +  I  L N      +  +       D 
Sbjct: 26  DINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNSPKKWREYYDDANLIKYDP 82

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            + + NS   PI W  I E   +       ++         G +FP+    +  G + F 
Sbjct: 83  IVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGMLSFA 141

Query: 136 SEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                   + +   H           ++ ++ ++    + +  +LT+RE  CL    +G 
Sbjct: 142 HSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNTDLTKREKECLAWPCEGK 200

Query: 190 TSEEIAEKLGLSVH 203
           TS +I + LG S  
Sbjct: 201 TSWDIPKILGCSER 214


>gi|15603675|ref|NP_246749.1| NarP [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12722232|gb|AAK03894.1| NarP [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 209

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V         +I              + ++       Q        
Sbjct: 72  LRAEGIDARILILTVSDLKSDIFTLIDAGADGYLLKDTEPDALLSQIQRIAQGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I D L   +  +    +LT+RE   L+L   G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKDALIERQMNADPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A       
Sbjct: 192 NVHSRVAATVLYFEH 206


>gi|325529069|gb|EGD06070.1| LuxR superfamily regulatory protein [Burkholderia sp. TJI49]
          Length = 267

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 70/243 (28%), Gaps = 17/243 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  A +      L                
Sbjct: 27  TLAHAQSTAERNRIVSGLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PATYRGDYV 84

Query: 67  ILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQLSVRLEGGLLPFAG 117
                  D          +PI+W         +   +  V  +S    ++        +G
Sbjct: 85  RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRQRDDGCVTPASLDGFLQTMQDDGMCSG 144

Query: 118 IAFPVRLGFHKN-GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAA 171
           I + + +   +   ++ FT+                 + G           +   R  A 
Sbjct: 145 IMYSMAVPGTRLHAFMSFTAPRRTREWITPATVEQALSIGLSVHKFASPQLIATSRERAV 204

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      + 
Sbjct: 205 NGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTSKL 264

Query: 232 GYI 234
             I
Sbjct: 265 ELI 267


>gi|321314554|ref|YP_004206841.1| two-component response regulator YfiJ [Bacillus subtilis BSn5]
 gi|320020828|gb|ADV95814.1| two-component response regulator (YfiJ) [Bacillus subtilis BSn5]
          Length = 220

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LTERE   L   G G  ++EIAEKL ++  TV  ++ +   KL   +R QA   ++R+G
Sbjct: 158 LTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216


>gi|296330481|ref|ZP_06872960.1| two-component response regulator (DesK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674733|ref|YP_003866405.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152378|gb|EFG93248.1| two-component response regulator (DesK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412977|gb|ADM38096.1| two-component response regulator (paired with DesK) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 199

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S A  LT+RE   L+L  DG  ++EIA++L +   TV  Y+     KL+  NR
Sbjct: 126 ELMEDIYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITRSKEKGW 197


>gi|297203696|ref|ZP_06921093.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197711744|gb|EDY55778.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETS 180
           VR     +   +      +LA  +          V     E     +      LT RE  
Sbjct: 106 VRRDDLVHAVRVVAGGDSLLAPTITRRL--VADIVRRRREEAATGATPDRLDALTAREVE 163

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L++   G ++ EIA  L +S HTV  ++ +   KL   +R+QA+  A   G +
Sbjct: 164 ILRMLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGLV 217


>gi|195873588|ref|ZP_02697602.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633426|gb|EDX51840.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 248

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|157683240|gb|ABV64383.1| response regulator [Anabaena sp. L-31]
          Length = 228

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +             +      +    +   LT RE   L L   G T++EIA  L ++ 
Sbjct: 129 WDETATREIRSSIAASQSQPSTENLIKSDHPLTGRELEILSLLAQGKTNQEIATALYITP 188

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  ++ +   KLD  +R QA+  A++   I
Sbjct: 189 GTVRVHVHAILHKLDVSDRHQAVVLALQKRLI 220


>gi|331267046|ref|YP_004326676.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683718|emb|CBZ01336.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 199

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIATESGWL 199


>gi|293390864|ref|ZP_06635198.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951398|gb|EFE01517.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 209

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I              + ++       +        
Sbjct: 72  LRAEGVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIARGEVILSDS 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L   +       +LT+RE   L+L   G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNLLLERQSAQEPIYSLTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A       
Sbjct: 192 NVHSRVAATVLYFEH 206


>gi|330816528|ref|YP_004360233.1| Transcriptional regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
 gi|327368921|gb|AEA60277.1| Transcriptional regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
          Length = 293

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 10/227 (4%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            + L   +  +   + A  FA + +  A   P R      L +      D          
Sbjct: 69  REALREIVSRLVRLLGAERFA-FLLVPAEGEPPRLGDEEVLTDAAPAWLDSYRARGLFET 127

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + +      P    +I        +              A +  P  L     G V+
Sbjct: 128 DPGIAYARRNSAPTGAAAIAPRADGPCALGEHD---AAHGFRAKLIAPAHLPTPGLGGVL 184

Query: 134 FTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +                  I       +++       +  ++ +  LTERET  L+L   
Sbjct: 185 YVGLDARADEGEAALHGKRILYRLIASELLDWHARQQRSDAARSLALTERETGILRLLRS 244

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T+ +IA +L ++V TV  Y      K    +    + +A   G +
Sbjct: 245 GCTAHDIAGQLCVAVPTVYGYYKRLNEKFSVNHISLTVKRAATLGLL 291


>gi|324324220|gb|ADY19480.1| two component LuxR family transcriptional regulator [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 218

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R QA   
Sbjct: 149 PEQLAQLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIY 208

Query: 228 AIRFGY 233
           A+R+G 
Sbjct: 209 AVRYGI 214


>gi|302545751|ref|ZP_07298093.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463369|gb|EFL26462.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 3/197 (1%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           I+   + P  +Q +    N   D   +   + E  G +           +  +       
Sbjct: 28  IDVVGEAPDGRQGVDVSRNTHPDVVLMDVRMPEMDGLEAARQLLEPPRGVTHRPKVLMLT 87

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                             +G              V   +    L    +           
Sbjct: 88  TFDVDDYVYEALRAG--ASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR-RLIAEFAR 144

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                           LT RET  L+L   G +++EIAE L L+  TV  ++G    KL 
Sbjct: 145 QRPAPRRNSSLLRRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTHIGRVLAKLG 204

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R QA+  A   G +
Sbjct: 205 LRDRAQAVIFAYESGLV 221


>gi|228990919|ref|ZP_04150883.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228768856|gb|EEM17455.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 191

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+ +     +        L+ERE   L+L   G T+ EIAE L +S  TV  ++ 
Sbjct: 100 RVAARVVNEIRATKQASPDPFSELSERELEVLRLIARGLTNAEIAESLFISGKTVKGHVS 159

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL  ++R +A   A   G+
Sbjct: 160 NILSKLHMLDRTKAAVFAWEQGF 182


>gi|254414589|ref|ZP_05028354.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420]
 gi|196178437|gb|EDX73436.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420]
          Length = 217

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+RE   L L   G +++EI E L ++  TV  ++ +   KLD  +R QA   AI+
Sbjct: 152 ANPLTQREQEILALIAAGKSNQEIGELLHIATGTVRVHVHAILQKLDVRDRTQAAVLAIQ 211

Query: 231 FGYI 234
            G +
Sbjct: 212 KGLV 215


>gi|329939330|ref|ZP_08288666.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301559|gb|EGG45453.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A    + A G   ++IT+F  +     S  +     LTERET  L 
Sbjct: 109 DASAEQLAEAVRVVAAGDGLLAPGVTRRLITEFTRMRSGPRSPLKERVGTLTERETEVLA 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIAE+L ++  TV  ++G   VKL   +R QA   A   G +
Sbjct: 169 LIAQGLSNAEIAERLCVAEQTVKTHVGRILVKLGLRDRTQAAVYAFESGVV 219


>gi|300932860|ref|ZP_07148116.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 252

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G++++EIAE+L +S+ TV  ++G    K  + +R+ A+  A++ 
Sbjct: 182 DPLTPREREILCLVATGHSNQEIAEELFISLPTVKTHVGRVLTKTGSRDRVHAVLFALKH 241

Query: 232 GYI 234
             +
Sbjct: 242 HLV 244


>gi|37520140|ref|NP_923517.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211133|dbj|BAC88512.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 217

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 38/83 (45%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              QV + F     +  + A  LTERE   L     G ++ EI  +L +S  TV  ++ +
Sbjct: 132 VLAQVRSAFAVAPSEPPANAAALTEREREVLGWIARGASNPEIGRQLHISSGTVRVHVHA 191

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A +R QA   A+  G I
Sbjct: 192 ILRKLGATDRTQAAVLALEKGLI 214


>gi|331699942|ref|YP_004336181.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954631|gb|AEA28328.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 221

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 1/113 (0%)

Query: 123 RLGFHKN-GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
                     V   +    L    +     A +            R      LT+RET  
Sbjct: 105 HAPATDLLHAVRVVAAGEALLAPEVTRRLIAHFVAARPDPAAAGPRPDRLAPLTDRETEV 164

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G ++ EIA+ L L+  TV  ++     KL   +R QA+  A   G +
Sbjct: 165 LGLVARGLSNTEIADALVLAEQTVKTHVSRIFGKLGLRDRAQAVVVAYECGLV 217


>gi|116494716|ref|YP_806450.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116104866|gb|ABJ70008.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 202

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++ +  LT+RE + L     G +S++IA  L LS  TV  YL +   KL   NRI+A+  
Sbjct: 135 TAESNPLTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQM 194

Query: 228 AIRFGYI 234
           A +  ++
Sbjct: 195 AKKNKWL 201


>gi|289522810|ref|ZP_06439664.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503834|gb|EFD24998.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 222

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198
            ++ +++     A   V+ D+L L +    AA   L+ RE   L+L   G  ++ IA KL
Sbjct: 121 AVSQDLVYLTPKAAKIVLEDYLLLKRGDVLAAENKLSPREMEVLRLLVKGEHTKSIASKL 180

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S  TV+ +  +   KL+  N       AIR G +
Sbjct: 181 SISKSTVDTHRKNIMEKLNCANIADLTRYAIREGLV 216


>gi|282854131|ref|ZP_06263468.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583584|gb|EFB88964.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|313813050|gb|EFS50764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|314923106|gb|EFS86937.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314966874|gb|EFT10973.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981217|gb|EFT25311.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091787|gb|EFT63763.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315103290|gb|EFT75266.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327327699|gb|EGE69475.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 218

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +      +     ++        +     +      S A  LT RE    +L   G ++ 
Sbjct: 109 LVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLTAREIEVAKLVARGLSNA 168

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 169 EIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|75908471|ref|YP_322767.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75702196|gb|ABA21872.1| Transcriptional Regulator with GAF sensor, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 224

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 68/224 (30%), Gaps = 29/224 (12%)

Query: 11  SSSLQELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
             + QEL P L   I      +++ +Y I+S        Q I           +   +  
Sbjct: 15  IRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKPDTETQSI------PAVCLESNPVGR 68

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                    H    L P  W+                           +  P+       
Sbjct: 69  YVVERHAPAHEQLILTPEDWKD--------------FCPRHDHG--HVMTGPIICDGRLI 112

Query: 130 GYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183
           G + F  +    A     + +    C  +      L       +SS    LT RE    +
Sbjct: 113 GTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLRTNPNIFKSSTTNPLTPRELQIAE 172

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L   G T+ EIAEKL ++ ++V   L     KL    R + +A+
Sbjct: 173 LVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVAR 216


>gi|261405105|ref|YP_003241346.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261281568|gb|ACX63539.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 200

 Score = 92.2 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              N Y++  S    LA  +     G           + +  S     LTERE   L L 
Sbjct: 94  AGANAYLLKDSPSEELAASIRSIMAGRRIYASE---LVDEAYSGEENPLTEREKEVLGLI 150

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  ++EIA +L ++  TV  Y+     KL   NRI+AI +    G+
Sbjct: 151 ADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEAITRFKEKGW 198


>gi|332668949|ref|YP_004451957.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332337987|gb|AEE44570.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 226

 Score = 92.2 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
               ++    +          +           +      LT RE   L+L  +G ++ E
Sbjct: 120 AGTSVVAPRVLRRMLDLFAPHLPTGGRAPAPDGQDPRLAALTPRELDVLRLVAEGASNVE 179

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IA +L +S  TV  ++G+   KL A +R+QA+  A   G 
Sbjct: 180 IAAELVVSEATVKTHVGNVFAKLGARDRVQAVIIAYECGL 219


>gi|225175373|ref|ZP_03729368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169125|gb|EEG77924.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 378

 Score = 92.2 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 33/72 (45%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                      L+ RE   L L   G +++EI+EKL LSV TV  +  +   KL    R 
Sbjct: 305 ASSPIPGLVEELSTRELEILDLINRGLSNQEISEKLFLSVGTVKWHTSNIYGKLGVKGRT 364

Query: 223 QAIAKAIRFGYI 234
           QAIA A +   +
Sbjct: 365 QAIAMARKLNML 376


>gi|16077897|ref|NP_388711.1| two-component response regulator YfiJ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308666|ref|ZP_03590513.1| hypothetical protein Bsubs1_04608 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312990|ref|ZP_03594795.1| hypothetical protein BsubsN3_04559 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317916|ref|ZP_03599210.1| hypothetical protein BsubsJ_04503 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322189|ref|ZP_03603483.1| hypothetical protein BsubsS_04599 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81818210|sp|P94439|YFIK_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yfiK
 gi|1817535|dbj|BAA11401.1| YfiK [Bacillus subtilis]
 gi|2633154|emb|CAB12659.1| two-component response regulator [YfiJ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 220

 Score = 92.2 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LTERE   L   G G  ++EIAEKL ++  TV  ++ +   KL   +R QA   ++R+G
Sbjct: 158 LTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216


>gi|308178463|ref|YP_003917869.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745926|emb|CBT76898.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 221

 Score = 92.2 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 1/106 (0%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                 +   +L+ EV ++          +         +     LTERE   L     G
Sbjct: 115 AVHQVAAGNGLLSPEVTLKLIQRNTGAAQSTPSAAATAEAQLLEALTERERQVLGELATG 174

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++EIA  LGLS  TV  +L +   KL   +R+Q +  A R G I
Sbjct: 175 KNNQEIAAVLGLSEATVKTHLSNLLAKLHLRDRVQGVLFAHRAGLI 220


>gi|284028348|ref|YP_003378279.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283807641|gb|ADB29480.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 210

 Score = 92.2 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 47/110 (42%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               +GY++  +    L   +   A G           L K+  S    LTERE   L L
Sbjct: 96  DAGASGYLLKDAPPDDLFRAIRGTARGEVVLAPAVAARLVKRAGSPGPVLTEREVEILGL 155

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++ E+A++L +S  TV ++L     KL    R  A+A+AI    I
Sbjct: 156 LATGQSNRELAKRLFVSEATVKSHLSHIYTKLGVDTRAAAVARAIEQHII 205


>gi|171909840|ref|ZP_02925310.1| NarL subfamily protein [Verrucomicrobium spinosum DSM 4136]
          Length = 216

 Score = 92.2 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G +++EIA  L +S  TV  +L S   KLD ++R +AIA A R 
Sbjct: 152 EPLTRREQEVLELLARGRSNKEIASTLSISEPTVKTHLRSLFGKLDVLSRTEAIAVASRK 211

Query: 232 GYI 234
           G +
Sbjct: 212 GLV 214


>gi|238064365|ref|ZP_04609074.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886176|gb|EEP75004.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 228

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              +  +   R+LT RE   ++LA DG +++EIA +L LS  TV  ++  A  KL A +R
Sbjct: 149 AAPQPTTPGIRDLTNREREAMKLAADGKSNDEIARELNLSALTVRTHIQRAMTKLGARDR 208

Query: 222 IQAIAKAIRFGYI 234
            Q +  A + G +
Sbjct: 209 AQLVVLAYKNGLV 221


>gi|227535294|ref|ZP_03965343.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187028|gb|EEI67095.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 202

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++ +  LT+RE + L     G +S++IA  L LS  TV  YL +   KL   NRI+A+  
Sbjct: 135 TAESNPLTDRELAVLAAVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQM 194

Query: 228 AIRFGYI 234
           A +  ++
Sbjct: 195 AKKNKWL 201


>gi|254424867|ref|ZP_05038585.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           PCC 7335]
 gi|196192356|gb|EDX87320.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           PCC 7335]
          Length = 412

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   + L   G    EI+++L +S  TV  +  +   KL    R QA+ +A + G
Sbjct: 351 PLSAREQEVIMLLAQGLRDREISKQLFISERTVKFHTRNMLGKLGVRTRTQAVFRATKQG 410

Query: 233 YI 234
           ++
Sbjct: 411 WL 412


>gi|323358243|ref|YP_004224639.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274614|dbj|BAJ74759.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 222

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             + L+                  +     +   S A  LTERE+  L+L  +  ++ EI
Sbjct: 123 AGDALLAPEVTRRVIARFASGGAPEPAASVRPPLSLAEPLTERESEVLKLVAEALSNAEI 182

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L +   TV  ++ +   KL A +R+QA+  A R G 
Sbjct: 183 AARLFIGEATVKTHVSNVLQKLGARDRVQAVVLAHRHGL 221


>gi|319651764|ref|ZP_08005890.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2]
 gi|317396583|gb|EFV77295.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2]
          Length = 74

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT+RE    +L     T+ EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 12  LTKREREVFELLVQDKTTREIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|238027886|ref|YP_002912117.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877080|gb|ACR29413.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 243

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 21/166 (12%)

Query: 88  IWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
            W+ +  + + + +S         G    A I             +    +    +    
Sbjct: 80  RWRDLDTDRSSLHASEADVASYMRGQGIVACIGASSGDPAAIRTVLQL--KCEDESLHSA 137

Query: 147 IEAHGACYQVITDF------LELFKKRSSAAR------------NLTERETSCLQLAGDG 188
           +        +              + R  AA               T +E+  ++   +G
Sbjct: 138 LILSFIAMHLHAALTQKIPDRSHGEARMPAAETDGVGSADGEGFQFTRKESEVVKWVVEG 197

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+ EI   L +S  TV  +L +   KL   NR QA+AK  R G I
Sbjct: 198 KTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKVSRLGLI 243


>gi|256822428|ref|YP_003146391.1| two component LuxR family transcriptional regulator [Kangiella
           koreensis DSM 16069]
 gi|256795967|gb|ACV26623.1| two component transcriptional regulator, LuxR family [Kangiella
           koreensis DSM 16069]
          Length = 212

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 38/85 (44%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             A   + T + +  K+     +NLT+RE     L  DG T+++IA  L +SV T   + 
Sbjct: 127 QYAASVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKDIARTLDISVKTAENHR 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
           G    KL   N  + +  A +   +
Sbjct: 187 GKVLDKLGVSNTAELVRYAAKHNLL 211


>gi|204928389|ref|ZP_03219589.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322711|gb|EDZ07908.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 248

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|149184470|ref|ZP_01862788.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831790|gb|EDL50223.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 140

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGY--VIFTSEFLMLANEVIIEAHGACYQVITDFLE 162
            +     L     + F +    +++ +    F+SE   LA  V+   H            
Sbjct: 8   HLDKLRALGVRNWVGFALYGPRNRDAFGSAGFSSEPSELAEGVLTATHSILSSAHLQICR 67

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  + +    +L++RE   L+L G G TS EI   L +S  TV  Y      KL+A +R+
Sbjct: 68  IMDRANPEI-SLSQRERQVLELMGSGKTSVEIGTILAISPETVKTYTKRLYEKLEANDRV 126

Query: 223 QAIAKAIRFGYI 234
            A  +A++ G +
Sbjct: 127 TATVRALKLGLV 138


>gi|15901823|ref|NP_346427.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111656996|ref|ZP_01407802.1| hypothetical protein SpneT_02001776 [Streptococcus pneumoniae
           TIGR4]
 gi|148995258|ref|ZP_01824066.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|168490006|ref|ZP_02714205.1| DNA-binding response regulator [Streptococcus pneumoniae SP195]
 gi|5830548|emb|CAB54585.1| response regulator [Streptococcus pneumoniae]
 gi|14973509|gb|AAK76067.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|147926803|gb|EDK77860.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|183571627|gb|EDT92155.1| DNA-binding response regulator [Streptococcus pneumoniae SP195]
 gi|332072085|gb|EGI82572.1| response regulator [Streptococcus pneumoniae GA17570]
          Length = 199

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +        LTE+E + L+    G++++EIA+KL LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|308070500|ref|YP_003872105.1| Germination protein gerE [Paenibacillus polymyxa E681]
 gi|305859779|gb|ADM71567.1| Germination protein gerE [Paenibacillus polymyxa E681]
          Length = 75

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L     T+ +IA +L +S  TV  ++ +   KL+   R QA+ + IR G
Sbjct: 13  LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRLG 71


>gi|238764730|ref|ZP_04625673.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238697021|gb|EEP89795.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
          Length = 219

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L    +    I   V         +I              E+++E      +        
Sbjct: 82  LRHEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLAAKGEPVFSDE 141

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 142 VAQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 201

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 202 NVRSRVAATIL 212


>gi|75812313|ref|YP_319932.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705069|gb|ABA24743.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 220

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT+RE S L L   G+++++I EKL +  +TV  +  +   KL   +RI AI K    
Sbjct: 150 DHLTQREISVLALIAAGFSNKQIGEKLFIGENTVKNHARNIYSKLGVDSRINAILKGSEL 209

Query: 232 GYI 234
           GYI
Sbjct: 210 GYI 212


>gi|17229630|ref|NP_486178.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131229|dbj|BAB73837.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 209

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L+    G ++ +IA+ L +   TV +++     KLD  +R QA+  A++ 
Sbjct: 145 PELSERELEVLRSLAQGMSNADIADALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKR 204

Query: 232 GYI 234
           G +
Sbjct: 205 GIV 207


>gi|331699447|ref|YP_004335686.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954136|gb|AEA27833.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 211

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 36/78 (46%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L     R +    L+ RE   ++    G T+ EIA  L +S+ TV  +L +   KL
Sbjct: 133 LLRHLTTPAPRPTLPEPLSPREIDVVRAVARGRTNAEIAADLFVSLSTVKTHLTNVQAKL 192

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A NR++  A A   G +
Sbjct: 193 GARNRVEVAAWAWEHGLV 210


>gi|312132943|ref|YP_004000282.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773923|gb|ADQ03411.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
          Length = 248

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 242

Query: 229 IRFGYI 234
                +
Sbjct: 243 YENHLV 248


>gi|302561087|ref|ZP_07313429.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302478705|gb|EFL41798.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 230

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +       D   R+          LD             
Sbjct: 17  VDDHPMWRDAVARDLSEAGFEVVATAGDGDQAVRRAKAAAPDVLVLDL--------NLPA 68

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +                   V+ ++  + V +       A +   V+ G        
Sbjct: 69  KPGVQVCKE--------------VVAANPAVRVLVLSASGEHADVLEAVKSGATGYLLKS 114

Query: 134 FTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSA--------ARNLTERETS 180
            ++E L  A             G    V+ ++  L  + +          A  LT+RET 
Sbjct: 115 ASTEDLQDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAGPAPGDGEPGAPRLTDRETE 174

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 175 VLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 227


>gi|229493356|ref|ZP_04387145.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229319672|gb|EEN85504.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 220

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G ++ EIAE+L ++  TV  ++G    KLD  +R QA+  A   
Sbjct: 155 DALTPREREVLELIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYES 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|218291050|ref|ZP_03495082.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239004|gb|EED06210.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 506

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELF 164
               + +  PV       G ++          +         + A      V+  + +  
Sbjct: 376 FHLSSLLVCPVIDQRRLLGIMLLDHGGRPFTPDNAAIRMVEAMLARAGRMIVMQMYRQAG 435

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +    LT+RE   LQL  DG  ++EI   L +S +TV  ++ S   KL A NR +A
Sbjct: 436 AAPITPLTTLTKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEA 495

Query: 225 IAKAIRFGYI 234
           +AKA+R   I
Sbjct: 496 VAKAMRERII 505


>gi|200388129|ref|ZP_03214741.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605227|gb|EDZ03772.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 248

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLSIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|148271583|ref|YP_001221144.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829513|emb|CAN00426.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L+L  +G  + EIAE+L L   TV  ++    +KL   +R+QA+  A
Sbjct: 175 PRVATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFA 234

Query: 229 IRFGYI 234
              G +
Sbjct: 235 YERGIV 240


>gi|322437485|ref|YP_004219575.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165378|gb|ADW71081.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 244

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               +GY++   +   L  ++   A G   + ++            +R L+ERE   L+L
Sbjct: 135 SAGASGYLLKGIDGSTLVQQLRHVASG--GRAMSPEALEKFTDYLTSRKLSEREIEVLRL 192

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +++EIA +L ++  T+  ++ S   KL A +R QA+  AI+ G +
Sbjct: 193 VAKGNSNKEIAAQLFVTEDTIKVHVRSMLAKLHASDRTQAVVIAIQRGLL 242


>gi|77918586|ref|YP_356401.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544669|gb|ABA88231.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM
           2380]
          Length = 223

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 151 GACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                 +       ++ S A ++      LT RE   L     G  ++EI+  L +S  T
Sbjct: 133 YLMDLAVDWHASEQEEESPADKDDESDAFLTRREQQILSCLAQGQGNKEISNALFISTET 192

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++ +   KL+  +R++A+  A     I
Sbjct: 193 VKTHIKNIFKKLEVKSRLEAVIAAKEKKLI 222


>gi|251795472|ref|YP_003010203.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|304408019|ref|ZP_07389669.1| transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|247543098|gb|ACT00117.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2]
 gi|304343038|gb|EFM08882.1| transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 74

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L     T+ +IA++L +S  TV  ++ +   KL+   R QA+ + I+ G
Sbjct: 12  LTHREREVFELLVQDKTTRDIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLG 70


>gi|28975412|gb|AAO61802.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus]
 gi|328469240|gb|EGF40186.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 223

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               +    ++   ++ S          LT+RE   +     G ++++IAE+L +S +TV
Sbjct: 129 WFSRKFAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQQIAEQLFVSENTV 188

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             +L +   K+D  NR+QA+  A   
Sbjct: 189 KTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|28901302|ref|NP_800957.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836071|ref|ZP_01988738.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ3810]
 gi|260362859|ref|ZP_05775728.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           K5030]
 gi|260880147|ref|ZP_05892502.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AN-5034]
 gi|260895264|ref|ZP_05903760.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           Peru-466]
 gi|260900616|ref|ZP_05909011.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ4037]
 gi|28809815|dbj|BAC62790.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750825|gb|EDM61570.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ3810]
 gi|308085647|gb|EFO35342.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           Peru-466]
 gi|308091763|gb|EFO41458.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AN-5034]
 gi|308107093|gb|EFO44633.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ4037]
 gi|308112345|gb|EFO49885.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           K5030]
          Length = 223

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               +    ++   ++ S          LT+RE   +     G ++++IAE+L +S +TV
Sbjct: 129 WFSRKFAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQQIAEQLFVSENTV 188

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             +L +   K+D  NR+QA+  A   
Sbjct: 189 KTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|298246164|ref|ZP_06969970.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553645|gb|EFH87510.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 465

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
                       ++A   ++       ++++      ++R + +  LT RE   L+L   
Sbjct: 357 DVSSEELAEALRVVARGEVLVQPQLAGRLLSRVGR-ERERGARSEVLTTRELEVLRLLVR 415

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G  ++EIA +L +S  TVN +L +   K++   R +A++KA+  G +
Sbjct: 416 GLRNKEIAARLYVSERTVNFHLANIYQKMNVSGRTEALSKALAQGLV 462


>gi|300087957|ref|YP_003758479.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527690|gb|ADJ26158.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLE---- 162
           +       A +   +R G         + + L+ A   +    H    ++    +     
Sbjct: 81  MLSMYGNEAYVQGALRAGARGYILKEASVDELVAAVREVAAGRHYLSTELSQRAIAYYIK 140

Query: 163 --LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
               ++ +S    L+ RE   L L    YT  +IA+KL +S  TV A+  +   KL   N
Sbjct: 141 QPSAEEETSPYEQLSNREREVLHLVVRDYTGADIAKKLFISPRTVEAHRANLMRKLGMKN 200

Query: 221 RIQAIAKAIRFGYI 234
           R Q I   ++ G +
Sbjct: 201 RTQLIKFCLQNGIL 214


>gi|282864347|ref|ZP_06273403.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560834|gb|EFB66380.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 223

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +         +    A   LTERE   L+L   G ++ EIA  L +S  TV  ++G
Sbjct: 135 RLLDKYADHLPSGEEPVPDALHTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A   G +
Sbjct: 195 HVLTKLRLRDRVQAAVYAYESGLV 218


>gi|2916781|emb|CAA11948.1| unnamed protein product [Sinorhizobium meliloti]
          Length = 245

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 24/219 (10%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  +   + A ++ L   + + D            ++  D                +   
Sbjct: 46  LAALTEYVGATHYLLARHDVSQD---GGLDFVVCSDWPFD---------------IVRRL 87

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA-----FPVRLGFHKNGYVIFT 135
           +  +  +  +  + E  +         +   +    G++         +G  +   ++  
Sbjct: 88  SGIIAGLHAKITELEKCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLMLLF 147

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            E ++L+ E + +       V +  ++   +       LTERE  CL    +G TS+EIA
Sbjct: 148 PEDVILSQESLRDIAVLAGYVASHKIKADVRHDRECE-LTERELECLFWIAEGKTSDEIA 206

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 207 VILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245


>gi|332532863|ref|ZP_08408736.1| transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037709|gb|EGI74160.1| transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 216

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++ ++   +LT ++   LQ   +G  +++IA +L +S  TV A++ +   KL   NR Q
Sbjct: 141 DREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQ 200

Query: 224 AIAKAIRFGY 233
           A+  A +   
Sbjct: 201 AVLIAAKLKL 210


>gi|291444348|ref|ZP_06583738.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291347295|gb|EFE74199.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 225

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 2/197 (1%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           I+   +    +Q +    N+  D   +   + E  G        +  + ++ +       
Sbjct: 24  IDVVGEAADGRQGVDVSRNHHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLT 83

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                             +G              V   +    L    +     A +   
Sbjct: 84  TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQ 141

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                    ++     LT RE+  L+L   G +++EIA +L L+  TV  ++G    KLD
Sbjct: 142 RPAGATRTGQALRLNGLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLD 201

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R QA+  A   G +
Sbjct: 202 LRDRAQAVIFAYESGLV 218


>gi|229818194|ref|ZP_04448476.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM
           20098]
 gi|229784445|gb|EEP20559.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM
           20098]
          Length = 226

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +SV TV  ++ S   KL   NR +    A   
Sbjct: 164 DRLSNREQEVMRLIARGYTYKEVAAELFISVKTVETHVSSVLRKLQLSNRTELTRWAADR 223

Query: 232 GYI 234
             +
Sbjct: 224 RIV 226


>gi|194468755|ref|ZP_03074739.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205358488|ref|ZP_02656765.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194455119|gb|EDX43958.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333746|gb|EDZ20510.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 248

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     ++  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|220913015|ref|YP_002488324.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219859893|gb|ACL40235.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 242

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +   + ++  +            + +   E  +   +A + LT RE    QL   G ++ 
Sbjct: 138 VHRGDAVIAPSTTRRLLDHVAPLLRSQGNERPEH-HAAVQRLTTREREVFQLIAQGRSNP 196

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  L +S  TV  ++G    KL A +R+QA+  A   G +
Sbjct: 197 EIAAGLFVSEATVKTHVGHILAKLGARDRVQAVVIAYETGVV 238


>gi|300865100|ref|ZP_07109925.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300336871|emb|CBN55075.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 210

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               VI +        +++   L++RE+  L+L  +GY++ EIA  L LS +T+  ++  
Sbjct: 128 IARTVIENLKPPTPVSTASIGQLSQRESEVLKLMVEGYSNPEIAAALYLSPNTIKTHVRG 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+QA   A+R G +
Sbjct: 188 IMNKLAVDDRVQAAVVALRAGLV 210


>gi|221068174|ref|ZP_03544279.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220713197|gb|EED68565.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 253

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLTERETSCLQL 184
            +   +     +V+         +    L+   KR ++        +  L+ RE   L++
Sbjct: 144 SWFGNYPQAVLQVVNGGASITPSLARRLLQRCDKRPASGAVPGSDMSDRLSSRECEVLRM 203

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              G TS EI   L +S  TVN ++ +   KL   +R QA+  A   G+
Sbjct: 204 VASGNTSAEIGASLEISTMTVNTHIKNIYRKLQVRSRAQAVRFAYLRGW 252


>gi|50842410|ref|YP_055637.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|50840012|gb|AAT82679.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|315105495|gb|EFT77471.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 218

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +      +     ++        +     +      S A  LT RE    +L   G ++ 
Sbjct: 109 LVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLTAREIEVAKLVARGLSNA 168

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 169 EIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|23015369|ref|ZP_00055147.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 209

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   LQL   G  + EIA++LG+++ TV  +      KLD  N  +  A AIR G
Sbjct: 147 ALTAREREVLQLIARGNKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRG 206

Query: 233 YI 234
            I
Sbjct: 207 LI 208


>gi|328544601|ref|YP_004304710.1| transcriptional regulatory protein [polymorphum gilvum SL003B-26A1]
 gi|326414343|gb|ADZ71406.1| Transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1]
          Length = 233

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 11/235 (4%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S       +S++ Q++   L     RI A +  +  +         + +   +H Y   
Sbjct: 7   LSTQLRIVSESTTAQKILDILEANLARIGATHILITGLPMP-----NRPIDSLVHRY--- 58

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA- 119
               P+    +     L   +S L+  +  +      + +      RL   +   + I  
Sbjct: 59  --RWPDTRNGSTESPVLHASDSALMLGLASNRATVWTVTAGDMDHSRLLAAVGEGSQILI 116

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
            PV        +V      L      +           T   ++    S     L+ RE 
Sbjct: 117 VPVTELHPLQAFVFCAGPKLKTGKYELAALELLTDAAFTRLQDIGALSSQRPGALSSRER 176

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G T+ EIAE L +S  TV+A+L +A+VKL+A N+   + +A+R+G I
Sbjct: 177 KVLELTAFGKTASEIAELLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231


>gi|291004781|ref|ZP_06562754.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 212

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +       LTERE   L L   G ++ E+A +L LS  T+  ++G    KLD  +R+QA+
Sbjct: 139 RDPGVLDVLTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRDRVQAV 198

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 199 VLAYETGLV 207


>gi|271962124|ref|YP_003336320.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505299|gb|ACZ83577.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 45/106 (42%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           + G          +A    I       +V+T F  +     +A   LTERE   L+L   
Sbjct: 104 EAGAEEIGRAVHAVAAGEAIYGPEIARRVLTYFAGMPDPSRTAFPELTEREREVLELVAQ 163

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G  + EIA  L LS  TV  ++ +  +KL   +R QAI +A   G 
Sbjct: 164 GRGNNEIAGILFLSGKTVRNHVSNIFMKLQVADRAQAIVRAREAGL 209


>gi|197265742|ref|ZP_03165816.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244696|ref|YP_002217099.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|224584919|ref|YP_002638718.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|197243997|gb|EDY26617.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197939212|gb|ACH76545.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|224469447|gb|ACN47277.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 248

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|126727388|ref|ZP_01743223.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703383|gb|EBA02481.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 204

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + +      LT+RE   L+    G +++EIA  L +   TV  ++ +   K+ A NR Q
Sbjct: 134 EEAKHPLVEKLTKRECEVLKGLTKGKSNKEIARDLNIQEPTVKLHMKTLYRKIGAANRTQ 193

Query: 224 AIAKAIRFGY 233
           A   A   G 
Sbjct: 194 AALMAYEAGI 203


>gi|261251165|ref|ZP_05943739.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP
           102891]
 gi|260938038|gb|EEX94026.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP
           102891]
          Length = 205

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 11/138 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAH---GACYQVI 157
              L         +   V         ++              + +I+         +  
Sbjct: 63  LNALRADECDATIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELIDLLKDSLRGNKAY 122

Query: 158 TD----FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +     +L   +  SS    LT+RE   L+    G  +++IA+ L +S  TV  ++ S  
Sbjct: 123 SQEVATYLAERENTSSVFDELTDREMQILKEVAKGLRNKQIADTLFISESTVKVHMKSLL 182

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   +R  A    +  
Sbjct: 183 KKLQVPSRTAATVLYLER 200


>gi|260061809|ref|YP_003194889.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
 gi|88785942|gb|EAR17111.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
          Length = 536

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L K R    R LT RE   L+L   G T++  A +L +S  TV+ ++ +   KL   +R+
Sbjct: 461 LHKTREHPTRRLTLRELQVLRLIASGMTNKSAARELFISERTVDRHVSNIFDKLGVSSRV 520

Query: 223 QAIAKAIRFGYI 234
            A   AI+   I
Sbjct: 521 AATVVAIKHKLI 532


>gi|239940914|ref|ZP_04692851.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987390|ref|ZP_04708054.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 229

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 2/197 (1%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           I+   +    +Q +    N+  D   +   + E  G        +  + ++ +       
Sbjct: 28  IDVVGEAADGRQGVDVSRNHHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLT 87

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                             +G              V   +    L    +     A +   
Sbjct: 88  TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQ 145

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                    ++     LT RE+  L+L   G +++EIA +L L+  TV  ++G    KLD
Sbjct: 146 RPAGATRTGQALRLNGLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLD 205

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R QA+  A   G +
Sbjct: 206 LRDRAQAVIFAYESGLV 222


>gi|191638216|ref|YP_001987382.1| Response regulator [Lactobacillus casei BL23]
 gi|239631678|ref|ZP_04674709.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066277|ref|YP_003788300.1| CitB family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190712518|emb|CAQ66524.1| Response regulator [Lactobacillus casei BL23]
 gi|239526143|gb|EEQ65144.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438684|gb|ADK18450.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382247|gb|AEA53723.1| Two component transcriptional regulator, LuxR family [Lactobacillus
           casei LC2W]
 gi|327385444|gb|AEA56918.1| Two component transcriptional regulator, LuxR family [Lactobacillus
           casei BD-II]
          Length = 202

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++ +  LT+RE + L     G +S++IA  L LS  TV  YL +   KL   NRI+A+  
Sbjct: 135 TAESNPLTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQM 194

Query: 228 AIRFGYI 234
           A +  ++
Sbjct: 195 AKKNKWL 201


>gi|124024939|ref|YP_001014055.1| LuxR family regulatory protein [Prochlorococcus marinus str.
           NATL1A]
 gi|123960007|gb|ABM74790.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. NATL1A]
          Length = 90

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +S+   L+ RE   + L  DG T++EIAE+L +S  TV+ ++ +   K  + NR+  
Sbjct: 5   EIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKNRVAL 64

Query: 225 IAKAIRFGYIC 235
           +  A+  G IC
Sbjct: 65  LNWAMDHGKIC 75


>gi|91794405|ref|YP_564056.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91716407|gb|ABE56333.1| two component transcriptional regulator, LuxR family [Shewanella
           denitrificans OS217]
          Length = 219

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTE 176
               +  G +       + + L+ A EVI +       V+ + L      ++     L+E
Sbjct: 102 FLTSLHAGANGFLLKDVSLDKLLNAIEVIAQGGVLIEPVVLNQLSQQAPINAPEVNPLSE 161

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RETS L+   +G +++EIA  + L+  TV  ++ +   KL   +R +A+ K +  G I
Sbjct: 162 RETSILKFMANGCSNKEIATGVFLAEGTVKNHVSNILSKLGCRDRTRAVLKGLELGII 219


>gi|159902711|ref|YP_001550055.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9211]
 gi|159887887|gb|ABX08101.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9211]
          Length = 90

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   + L  DG T++EIA++L +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 13  SLSAREMEIIDLVADGLTNQEIAQRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 72

Query: 233 YIC 235
            IC
Sbjct: 73  KIC 75


>gi|254442066|ref|ZP_05055542.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256374|gb|EDY80682.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 220

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L     G +++EIA  L L+  TV  ++ +   KL  ++R QA   A   
Sbjct: 158 EPLSQREEQVLVWLSRGCSNKEIASHLDLAEGTVKNHVSNVLGKLGVLDRTQAALMARDL 217

Query: 232 GYI 234
           G +
Sbjct: 218 GLV 220


>gi|126650999|ref|ZP_01723210.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905]
 gi|126592200|gb|EAZ86249.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905]
          Length = 377

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169
               + I  P+       G++ F    E        ++       ++        +K   
Sbjct: 251 FNLSSIIFIPIIQQDQLFGWLTFDQLGEEFDCTKVELLLLEEVGKRLGLFLSRKGEKVEK 310

Query: 170 AAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
               +LTERE+  L L  +GY +++I   L LS HTV  Y+ S   KL A NR Q +A A
Sbjct: 311 NTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASA 370

Query: 229 IRFGYI 234
            R G +
Sbjct: 371 FRLGLL 376


>gi|332290267|ref|YP_004421119.1| transcriptional regulator NarP [Gallibacterium anatis UMN179]
 gi|330433163|gb|AEC18222.1| transcriptional regulator NarP [Gallibacterium anatis UMN179]
          Length = 209

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 11/151 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------ 145
           +       S   +   L    +        V         +I       L  +       
Sbjct: 55  LDLNMKGMSGLDVLKALRLDDIDARIAVLTVSDARSDIFALIEAGADGYLLKDTEPDTLL 114

Query: 146 -----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
                I E        +   L      +   + LT+RE   L+L   G ++++IA +L +
Sbjct: 115 VQLKKIAEGQVVLSDAVKQRLLDNHSANDPLQLLTDREMDVLKLIATGLSNKQIANQLFI 174

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           S  TV  ++ +   KL+  +R+ A    +  
Sbjct: 175 SEETVKVHIRNLLRKLNVHSRVAATVLYLEH 205


>gi|229028063|ref|ZP_04184215.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271]
 gi|228733301|gb|EEL84131.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271]
          Length = 214

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                  LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R QA  
Sbjct: 144 IPEQLAQLTEREVEVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAI 203

Query: 227 KAIRFG 232
            A+R+G
Sbjct: 204 YAVRYG 209


>gi|299137698|ref|ZP_07030879.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600339|gb|EFI56496.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 207

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196
             + E +I A     + +     L   R +    A  LT RE   L     G ++ EIAE
Sbjct: 107 DASGEELINAIQTVDRDLRYLPRLALDRLAERTPAVELTPREREVLICITQGRSNREIAE 166

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L ++  TV  ++ S   K+ A +R QA   A++ G +
Sbjct: 167 QLHIAEKTVRIHVSSVLDKMGARDRTQATIYALQRGLV 204


>gi|205354044|ref|YP_002227845.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858383|ref|YP_002245034.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|205273825|emb|CAR38822.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206710186|emb|CAR34543.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326629158|gb|EGE35501.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 227

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 18  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 70  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|238759424|ref|ZP_04620588.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
 gi|238702321|gb|EEP94874.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
          Length = 202

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L    +    I   V         VI              E+++E               
Sbjct: 65  LRNEGIDARIIVLTVSDARSDVYAVIDAGADGYLLKDSEPEILLENIRQAAAGENVFSNE 124

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 125 VAQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 184

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A    I  
Sbjct: 185 NVRSRVAATIMYIEN 199


>gi|16078980|ref|NP_389801.1| two-component response regulator DesK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309818|ref|ZP_03591665.1| hypothetical protein Bsubs1_10596 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314140|ref|ZP_03595945.1| hypothetical protein BsubsN3_10527 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319062|ref|ZP_03600356.1| hypothetical protein BsubsJ_10443 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323336|ref|ZP_03604630.1| hypothetical protein BsubsS_10562 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321311560|ref|YP_004203847.1| two-component response regulator DesK [Bacillus subtilis BSn5]
 gi|81815765|sp|O34723|DESR_BACSU RecName: Full=Transcriptional regulatory protein desR
 gi|2619014|gb|AAB84438.1| sensor regulator [Bacillus subtilis]
 gi|2634313|emb|CAB13812.1| two-component response regulator [DesK] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484510|dbj|BAI85585.1| hypothetical protein BSNT_03128 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320017834|gb|ADV92820.1| two-component response regulator (DesK) [Bacillus subtilis BSn5]
          Length = 199

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S A  LT+RE   L+L  DG  ++EIA++L +   TV  Y+     KL+  NR
Sbjct: 126 ELMEDLYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITRSKEKGW 197


>gi|29833019|ref|NP_827653.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610140|dbj|BAC74188.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 213

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178
           +R G     Y     + L  A   +   H     +V    L   +  S   R  +LTERE
Sbjct: 97  LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEEANSGQGRGGSLTERE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210


>gi|311742864|ref|ZP_07716672.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311313544|gb|EFQ83453.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 216

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 39/96 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L      ++        +         +       LTERE   L L   G+++ EIA +
Sbjct: 119 RLAAEGHSLLAPEVTQRVIARSTSRAAPEADGRLDELTERERDVLVLLARGHSNAEIAGE 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +S  TV +++     KL+  +R+QA+  A   G 
Sbjct: 179 LYVSAATVKSHVSHILAKLEVRDRVQAVILAFENGL 214


>gi|307154251|ref|YP_003889635.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984479|gb|ADN16360.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 231

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT RE   LQ    G ++E+IA++L ++V TV A+L +   KL   NR QAI  A++
Sbjct: 163 LTRREKEVLQYLIKGLSNEQIAQQLYITVATVKAHLTAIFNKLGVKNRTQAIVAAMK 219


>gi|148242532|ref|YP_001227689.1| two component system response regulator [Synechococcus sp. RCC307]
 gi|147850842|emb|CAK28336.1| Possible two component system response regulator [Synechococcus sp.
           RCC307]
          Length = 235

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 5/147 (3%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
            W        +    Q  VR          I          +                  
Sbjct: 91  RWPQCICLLFLRRETQEVVREALDAGAQGVIFVSSLGSGEGDFMKAIARTLEGGTYFPGP 150

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               A +    +   L      A   L+ RE   LQ   +GY + EIA++L +S  TV  
Sbjct: 151 VRDAAAFHPDDEAEGLE-----ALDQLSSREQEVLQALSEGYCNREIAQRLFISQETVKT 205

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R QA   A+R G +
Sbjct: 206 HVSTVISKLGVRDRTQAAVMALRMGLL 232


>gi|312880287|ref|ZP_07740087.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
 gi|310783578|gb|EFQ23976.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
          Length = 226

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++T F    ++R      LT RE   L     G+++ EIA K+ LS  TV  ++  
Sbjct: 131 VAGKLLTSFHRRREERDLLVD-LTPREREVLYWLSQGFSNAEIALKMVLSEKTVKNHVSH 189

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+  +R QA   A + G 
Sbjct: 190 VLRKLELNDRTQAAVLAWKMGL 211


>gi|300864647|ref|ZP_07109505.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300337396|emb|CBN54653.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 91

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   ++L   G T++EIA+KL +S  TV+ ++ +   K    NR+  +  A+++G 
Sbjct: 12  LSDRELQVVELVAAGLTNQEIADKLDISKRTVDNHMSNILTKTATGNRVALVRWAMQWGK 71

Query: 234 IC 235
           +C
Sbjct: 72  VC 73


>gi|226365530|ref|YP_002783313.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244020|dbj|BAH54368.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 228

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +++    LTERE   LQL   G ++ +I E+L +S  TV  ++ +   KLD   R +A+
Sbjct: 160 GQTTPREGLTERELEVLQLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAV 219

Query: 226 AKAIRFGYI 234
            +A + G I
Sbjct: 220 YEAGKLGLI 228


>gi|213965869|ref|ZP_03394060.1| two-component system response regulator [Corynebacterium amycolatum
           SK46]
 gi|213951447|gb|EEB62838.1| two-component system response regulator [Corynebacterium amycolatum
           SK46]
          Length = 227

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  +    LT RE   L+L   G ++ +IAE+L L+  TV ++L     KLD  +R
Sbjct: 153 RLMGRMRNPNTALTPRELEVLELVARGMSNRKIAEQLVLTEATVKSHLVHIFTKLDVSSR 212

Query: 222 IQAIAKAIRFGYI 234
             A+A+A   G +
Sbjct: 213 TAAVARAQELGML 225


>gi|170781371|ref|YP_001709703.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155939|emb|CAQ01071.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 249

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L+L  +G  + EIAE+L L   TV  ++    +KL   +R+QA+  A
Sbjct: 179 PRVATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFA 238

Query: 229 IRFGYI 234
              G +
Sbjct: 239 YERGIV 244


>gi|15964400|ref|NP_384753.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073577|emb|CAC45219.1| Transcriptional regulator of motility genes, LuxR family
           [Sinorhizobium meliloti 1021]
          Length = 245

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 18/216 (8%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI--PNILIETYGDDFLF 78
           L  +   + A ++ L   + + D            ++  D        I         L 
Sbjct: 46  LAALTEYVGATHYLLARHDVSQD---GGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELE 102

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
              + L P       +  +            G    +  + F V  G  +   ++   E 
Sbjct: 103 RCLAQLQPAFHTMPDDIGLP----------RGVSRSYCAVTFSV--GRTRFSLMLLFPED 150

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           ++L+ E + +       V +  ++   +       LTERE  CL    +G TS+EIA  L
Sbjct: 151 VILSQEALRDIAVLAGYVASHKIKADVRHDRECE-LTERELECLFWIAEGKTSDEIAVIL 209

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 210 GISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245


>gi|186681008|ref|YP_001864204.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463460|gb|ACC79261.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 160 FLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
              +       A      NL+ RE   L+L  DG ++ EIAEKL LS +T+  ++     
Sbjct: 146 ARRVIDNLKPPAPTSNNANLSARELEVLKLMVDGLSNPEIAEKLYLSPNTIKTHVRGIMN 205

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +R+QA   A+R G +
Sbjct: 206 KLAVDDRVQAAVVALRSGLV 225


>gi|271962079|ref|YP_003336275.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505254|gb|ACZ83532.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 212

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 125 GFHKNGYVIFTSEFLMLAN--EVIIEAH----GACYQVITDFLELFKKRSSAAR-----N 173
              + G   F  + +  A   + I   H        +     L +     + A       
Sbjct: 92  PAMRAGASGFLYKDVDPAALVQAIRAVHGGQVLLAPEAAEAMLSVPAPAPAPAEGRYVAP 151

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L L   G ++ EIA +L ++  TV  ++ +  +KL   +R QA   A+R G 
Sbjct: 152 LTDREREVLTLIASGRSNREIARELAVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNGL 211


>gi|75908249|ref|YP_322545.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75701974|gb|ABA21650.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 219

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L+L   G  ++EIA++L +S  TV  ++ +   +L   +R QA   A
Sbjct: 154 LTPREKEVLRLIAAGANNKEIAQQLYISEGTVKNHVTNILNRLSLRDRTQAAIIA 208


>gi|306825879|ref|ZP_07459218.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432240|gb|EFM35217.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 199

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KL+A NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLNAGNRTEAANIAKESGWL 199


>gi|294628486|ref|ZP_06707046.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. e14]
 gi|292831819|gb|EFF90168.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. e14]
          Length = 231

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSAAR 172
           L    +G+++  +    L   + + A G      +    L            +       
Sbjct: 97  LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGEEPVPDTLH 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA  L +S  TV  ++G    KL   +R+QA   A   G
Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216


>gi|229131918|ref|ZP_04260783.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196]
 gi|228651509|gb|EEL07479.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196]
          Length = 207

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  NLT++E   L+    GY ++EIA  +G++  TV A+L +   KL   +R +A+A +I
Sbjct: 141 AENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAHLTNIYNKLGVNSRSEAVAVSI 200

Query: 230 RFGYI 234
               I
Sbjct: 201 ERKLI 205


>gi|119492591|ref|ZP_01623809.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453060|gb|EAW34230.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 211

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 41/83 (49%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               VI        +    + NL+ RE   L+L  +G T+ +IAE+L LS +T+  ++  
Sbjct: 128 VAKCVINHLQPPTPQSDLKSTNLSPREFEVLKLMVEGKTNVKIAEELYLSPNTIKTHVRG 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+QA   A+R G +
Sbjct: 188 IMNKLSVDDRVQAAVTALRLGLV 210


>gi|150395470|ref|YP_001325937.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150026985|gb|ABR59102.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 245

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 81/216 (37%), Gaps = 18/216 (8%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF--LF 78
           L ++   + A ++ L   + + D            ++  D     + +I         L 
Sbjct: 46  LAVLTEYVGATHYLLARHDVSQD---GGLDFVVCSDWPFDIVRRLSGIIAGLNSKTTELE 102

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
              + L P+      +  +               +  +  A    +G  +   ++   E 
Sbjct: 103 KCRAQLQPVFHAMPDDIGLP------------RGVSRSYCAVTFSIGPTRFSLMLLFPED 150

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           ++L+ + + +       V +  ++   +       LTERE  CL    +G TS+EIA  L
Sbjct: 151 VILSQDALRDVAVLAGYVASHKIKADVRHDRECE-LTERELECLFWIAEGKTSDEIAVIL 209

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 210 GISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245


>gi|85860164|ref|YP_462366.1| two-component response regulator [Syntrophus aciditrophicus SB]
 gi|85723255|gb|ABC78198.1| two-component response regulator [Syntrophus aciditrophicus SB]
          Length = 215

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +  A +LT RE   LQL  +G T++EIA  L +SV TV  +  +   KL+     + 
Sbjct: 144 ETTTENAPSLTAREREMLQLMAEGMTAKEIAAHLFVSVKTVETHRRNIAQKLNINRAAEL 203

Query: 225 IAKAIRFGYI 234
           I  AIR G +
Sbjct: 204 IKYAIREGLV 213


>gi|47567457|ref|ZP_00238169.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|47555859|gb|EAL14198.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
          Length = 218

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LTERE   L+  G G  ++EIAEKL ++  TV  ++ +   KL+  +R QA   
Sbjct: 149 PEQLAQLTEREVDILREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIY 208

Query: 228 AIRFGY 233
           A+R+G 
Sbjct: 209 AVRYGI 214


>gi|297159346|gb|ADI09058.1| putative two component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 233

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYT 190
           + + + ++  +            +           S       LT+RE   + L   G +
Sbjct: 119 VHSGDAVVAPSTTRRLLDRFAPMLPGAAGGTGPGGSARPELERLTDREREVMLLVAQGLS 178

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA +L LS  TV  ++G    KL+  +R+Q +  A   G +
Sbjct: 179 NGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYESGLV 222


>gi|291300052|ref|YP_003511330.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569272|gb|ADD42237.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYT 190
            T+   ++A    + A     ++I +F     K ++ +    +LT+RET  L L   G +
Sbjct: 115 LTAAVRVIAAGEALLAPSVTRRLIAEFARTRPKATATSATLASLTDRETEILTLIARGLS 174

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA +L ++  TV  ++G    KL   +R QA+  A   G +
Sbjct: 175 NREIAGRLVVAEQTVKTHVGRIFAKLGLRDRAQAVVCAYETGLV 218


>gi|163758000|ref|ZP_02165088.1| putative GerE/LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284289|gb|EDQ34572.1| putative GerE/LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 224

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 17/216 (7%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI--LIETYGDDFLF 78
             LI +   A+ + +   +    +  R        N+  D         +        + 
Sbjct: 24  FDLISDYTGAKCYLVARYD---HYSDRHHDFVLTSNWPFDLVRNLGAGLVDAQARTSEVS 80

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                  P+          +  +    V L            P  +G  +    +   + 
Sbjct: 81  RCLHAFEPLFQDVDGVAVNLPENLSPRVCL-----------VPYNVGKVRLLMALLFEKD 129

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             ++++ I +A  A       F E+     S +  LT+RE  CL   G+G TS+EIA  +
Sbjct: 130 AFVSHDRIRDAALAASYHAVHFTEITTTSDSLSD-LTDREVECLSWIGEGKTSDEIALII 188

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+S +TVN Y+ S   K  A  R +A+A A+R   I
Sbjct: 189 GISRNTVNNYITSIMNKTGAKTRSEAVAFAVRQRII 224


>gi|149202587|ref|ZP_01879559.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149143869|gb|EDM31903.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 251

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 10/228 (4%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILI 69
           +++++EL                                     L N+D    ++     
Sbjct: 13  AATIEELWDHHTQFMAEYGFDRLIYGYTRYRTATSLGDPDDFLMLTNHDPCYTNVFVGEG 72

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQ---EETVIESSGQLSVRLEGGLLPFAGIAFPV--RL 124
             +    +           W  ++   +   +    +  V         AG +       
Sbjct: 73  LYFNAPMVRWALENEGACSWSVLRHMTDSGTLTPQERRVVEFNHAHGVTAGYSISFKSFS 132

Query: 125 GFHKNGYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180
              K    +   + +  +  + + E  G     + +   L           R LT R+  
Sbjct: 133 PRTKGAIALTARKGVTQSEVDDLWERCGEQILALNNVAHLRILSLPYCAPGRALTLRQRQ 192

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            L   GDG T ++ A  +GL+  TV  +L  A   L      QA+ KA
Sbjct: 193 VLGWVGDGKTIQDTATIMGLTPATVEKHLRLARQALSVETTAQAVLKA 240


>gi|153832913|ref|ZP_01985580.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi
           HY01]
 gi|148870836|gb|EDL69735.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi
           HY01]
          Length = 210

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156
           L         +   V         ++ +            + ++E     +       Q 
Sbjct: 71  LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHEGDKAYSQA 130

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L   + +      LT+RET  LQ    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 131 VAKYLNEREGQEDVFDTLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 190

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 191 KVPSRTAATVLYLER 205


>gi|219667264|ref|YP_002457699.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537524|gb|ACL19263.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 212

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   L L   G+T+ EIA  L +S  TV+ +  +   KL+  ++++    A++ 
Sbjct: 148 ETLTEREREILILLAKGHTNNEIAPILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKR 207

Query: 232 GYI 234
           G I
Sbjct: 208 GLI 210


>gi|227501858|ref|ZP_03931907.1| possible response regulator [Corynebacterium accolens ATCC 49725]
 gi|227077352|gb|EEI15315.1| possible response regulator [Corynebacterium accolens ATCC 49725]
          Length = 223

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  +   +LT RE   LQL   G ++ +I + L LS  TV ++L     KL   +R
Sbjct: 151 RLMTRVRTPRTSLTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSR 210

Query: 222 IQAIAKAIRFGYI 234
             A+A A   G +
Sbjct: 211 TSAVAAAREQGVL 223


>gi|225350985|ref|ZP_03742008.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158441|gb|EEG71683.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 228

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 166 DRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 225

Query: 232 GYI 234
             +
Sbjct: 226 RIV 228


>gi|156976379|ref|YP_001447285.1| protein-glutamate methylesterase [Vibrio harveyi ATCC BAA-1116]
 gi|156527973|gb|ABU73058.1| hypothetical protein VIBHAR_05152 [Vibrio harveyi ATCC BAA-1116]
          Length = 222

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +        K   A   LT+RE   +     G ++++IAE+L +S +TV  +L +   K+
Sbjct: 142 LRRHSRPLNKTVPAI--LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKI 199

Query: 217 DAVNRIQAIAKAIRF 231
           D  NR+QA+  A   
Sbjct: 200 DVKNRVQALIWAKEN 214


>gi|153831737|ref|ZP_01984404.1| probable csgAB operon transcriptional regulatory protein [Vibrio
           harveyi HY01]
 gi|148872247|gb|EDL71064.1| probable csgAB operon transcriptional regulatory protein [Vibrio
           harveyi HY01]
          Length = 222

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +        K   A   LT+RE   +     G ++++IAE+L +S +TV  +L +   K+
Sbjct: 142 LRRHSRPLNKTVPAI--LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKI 199

Query: 217 DAVNRIQAIAKAIRF 231
           D  NR+QA+  A   
Sbjct: 200 DVKNRVQALIWAKEN 214


>gi|99081053|ref|YP_613207.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037333|gb|ABF63945.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040]
          Length = 251

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 12/239 (5%)

Query: 1   MSENTLTGKKSSSLQEL-SPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYD 58
           +SE      +  +++EL    +  +            YT+               L N+ 
Sbjct: 3   LSEYLQQLTQFKTIEELWRAHVQQMSR-YGFDRLLYGYTLFKTRTSLGDPDDFVILTNHC 61

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPF 115
            +                L           W+    +  + +++   +        +   
Sbjct: 62  PEYLQGFLADGLYAHAPMLTWALENEGHASWRVSQEMAAQGLLDKQARKVQDFNQSMGVH 121

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANE---VIIEAHGACYQVITDFLELFKKRSS--- 169
           AG          +    I  +    L  +    I   HGA   ++ +   L         
Sbjct: 122 AGYTISFNSASERFKGAISLAARADLDQDGIDQIWAEHGADIVLMNNVAHLKILTLPYHA 181

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R LT+R+   LQ  GDG T+++IA  +GL+  T+  +L  A   L      QA+ KA
Sbjct: 182 PKRGLTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARATLSVETTAQAVLKA 240


>gi|182415183|ref|YP_001820249.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842397|gb|ACB76649.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 212

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 12/152 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       S       L         + +       +    +       +  E+ +E   
Sbjct: 61  LDLRMHGMSGVDAIRALRSEFGNVRVLVYSNYAAGEEVYQALKAGASGFVVKEMALERLL 120

Query: 152 ACYQVITD---------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
              + +            + + ++  +    L+ RE   L+L   G +++EIA +L +  
Sbjct: 121 EAIRKVHAGEQYVPPEIAMRMGERLMA---QLSPRELDVLKLVAKGRSNKEIAAELHVVE 177

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T   ++ +   KL   +R QAI  A+R G I
Sbjct: 178 GTAKIHVANILTKLGVSDRTQAIVVAVRRGII 209


>gi|218248856|ref|YP_002374227.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|257061918|ref|YP_003139806.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|218169334|gb|ACK68071.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801]
 gi|256592084|gb|ACV02971.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802]
          Length = 96

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   L L   G T+ EIAE+L +S  TV+ ++ +   K    NR++ +  A+++G
Sbjct: 11  SLSGREIEILDLVATGLTNLEIAEELEISKRTVDNHISNILTKTKTENRVELVRWALQWG 70

Query: 233 YIC 235
            IC
Sbjct: 71  KIC 73


>gi|94971316|ref|YP_593364.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553366|gb|ABF43290.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 218

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 36/76 (47%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                  K       LT RE   L+L  +G + +EIA  LGLSV TV A+  +   KLD 
Sbjct: 137 RARVRDAKLRPRISTLTPREREILKLLAEGNSVKEIAVLLGLSVKTVEAHKFNLMRKLDI 196

Query: 219 VNRIQAIAKAIRFGYI 234
            N+ Q +  AI+   I
Sbjct: 197 HNKAQLVTYAIQKKII 212


>gi|33239629|ref|NP_874571.1| transcriptional regulator [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237154|gb|AAP99223.1| Transcriptional regulator, contains HTH motif [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 93

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   ++L   G T++EIA+KL +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 13  SLSAREMEIIELVASGLTNQEIAQKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 72

Query: 233 YIC 235
            IC
Sbjct: 73  KIC 75


>gi|56963198|ref|YP_174929.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909441|dbj|BAD63968.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 210

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+   L+  ++  S   +LT RE + L   G+G  ++EIAE+LGLSV TV      
Sbjct: 129 VAAKVVPTLLQ-NQEEPSIDPSLTPRERAILTCIGEGLNNKEIAERLGLSVGTVKNQTSH 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R Q    AIR   +
Sbjct: 188 IFDKLALRDRTQLAIYAIRHRLV 210


>gi|260775603|ref|ZP_05884500.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608784|gb|EEX34949.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 215

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 144 EVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           E+I   +    +V    L      +  + + A  +LT RE   L+    G ++ +IAE L
Sbjct: 120 EIINSQNWLPRKVAAQLLHYYRHVVLSQTAPATVDLTSREIQILRCLKTGASNMQIAEDL 179

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +S  TV ++L     KL   NR+QAIA A + 
Sbjct: 180 FISEFTVKSHLYQIFKKLSVKNRVQAIAWANQH 212


>gi|259502947|ref|ZP_05745849.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM
           16041]
 gi|259169072|gb|EEW53567.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM
           16041]
          Length = 217

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE     L   GY++ EI+EKL +S  TV A+  + + KL   +R++ +  AI    
Sbjct: 155 LSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVELVRYAIHHHL 214

Query: 234 I 234
           I
Sbjct: 215 I 215


>gi|149007477|ref|ZP_01831120.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147761049|gb|EDK68018.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
          Length = 199

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|322392560|ref|ZP_08066020.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321144552|gb|EFX39953.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 199

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    LTE+E + L     G +++EIA++L LS  TV  Y+ +   KL A NR
Sbjct: 127 ELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADQLYLSNGTVRNYMTNILSKLGASNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A   A   G++
Sbjct: 187 TEAAKTAEEEGWL 199


>gi|299531690|ref|ZP_07045095.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
 gi|298720406|gb|EFI61358.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
          Length = 228

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LTERE   L+L   G T++EI+  L +S  TV  ++ +   K+    R QA+  A+  
Sbjct: 166 ESLTEREIDILKLIAQGKTTQEISSYLEISPLTVATHVKNIYGKMQVRTRAQAVRYAMLT 225

Query: 232 GYI 234
           G I
Sbjct: 226 GII 228


>gi|269836188|ref|YP_003318416.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785451|gb|ACZ37594.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 216

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAY 208
           G   +V+ +F      R    A  LTERE   L+L   G  +++++A++L +S +TV  +
Sbjct: 126 GLARKVLNEFARPAAPRPERTAEELTEREREVLELLVQGVTSNKDLADRLFVSENTVKYH 185

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +   KL   NR Q IA A+R G +
Sbjct: 186 LRNILNKLHLQNRAQVIAYALRHGLV 211


>gi|87301837|ref|ZP_01084671.1| possible transcriptional regulator [Synechococcus sp. WH 5701]
 gi|87283405|gb|EAQ75360.1| possible transcriptional regulator [Synechococcus sp. WH 5701]
          Length = 89

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ERE   ++    G T++EIA +L +S  TV+ ++ +   K  A NR+  +  A+  G
Sbjct: 13  SLSERELEIIERVATGLTNQEIALELMISKRTVDNHVSNIFTKTGAKNRVALLNWAMDNG 72

Query: 233 YIC 235
            IC
Sbjct: 73  KIC 75


>gi|315645472|ref|ZP_07898596.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315278950|gb|EFU42260.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 200

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              N Y++  S    LA  +     G           + +  S     LTERE   L L 
Sbjct: 94  AGANAYLLKDSPSEELAASIRSIMAGRRIYASE---LVDEAYSGEENPLTEREKEVLSLI 150

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  ++EIA +L ++  TV  Y+     KL   NRI+AI +    G+
Sbjct: 151 ADGKNTKEIATQLFITTGTVRNYISVILDKLGVSNRIEAITRFKEKGW 198


>gi|302542030|ref|ZP_07294372.1| two-component system, regulatory protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459648|gb|EFL22741.1| two-component system, regulatory protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 229

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYT 190
           + + +  +              +  +D  E  ++ +       LT RE   L L   G +
Sbjct: 114 VMSGDAGLSPQVQRRLLEWLAERGGSDRDEPERETAAGPLPDGLTPREAEVLALVAGGLS 173

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + EIA +L ++  TV  ++ +   K    +R QA+  A R G 
Sbjct: 174 NPEIARRLMIAPATVKTHINNLFAKTAVRDRAQAVRYAYRHGI 216


>gi|218288243|ref|ZP_03492542.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241602|gb|EED08775.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 224

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +            S  A  L+ RET  L L   GYT+ E+A+ L +SV TV  +  
Sbjct: 127 YLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQ 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               ++   +R   +  A + G +
Sbjct: 187 HIMRRIGLHSRAALVRYAYQNGLV 210


>gi|117928181|ref|YP_872732.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648644|gb|ABK52746.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 216

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 55/166 (33%), Gaps = 11/166 (6%)

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGYV 132
              +   P     I       S   ++  L         +   +  G        + G  
Sbjct: 46  ACATRHQP-DVVVIDVRLPDGSGLDVARELRRQRPDVGIVVLTMYAGDEQLFGALEAGAS 104

Query: 133 IFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            F ++     + V    H       +        + ++ + +   LT RE   LQL  DG
Sbjct: 105 AFVAKDAPAEDVVSAARHALVSPRSFSAADLAGAMRRRMNPSGPQLTPREREVLQLMADG 164

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                IA +L +S  T   ++     KL A NR QA+  AIR G +
Sbjct: 165 LGVSAIARQLFISESTTKTHVSKLYEKLGAANRAQALMAAIRLGLL 210


>gi|322377555|ref|ZP_08052045.1| DNA-binding response regulator [Streptococcus sp. M334]
 gi|321281320|gb|EFX58330.1| DNA-binding response regulator [Streptococcus sp. M334]
          Length = 199

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    LTE+E + L+    G++++EIA+KL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A   A   G++
Sbjct: 187 TEAANIAKESGWL 199


>gi|298244698|ref|ZP_06968504.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552179|gb|EFH86044.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 129 NGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
              +   +E +  A    +  H     +V+ +     K  S     L+ERE   L     
Sbjct: 108 EAALSELTEAIRKAARGEVVLHPHVAARVLQELRGTNKDASKLYATLSEREREVLNWIAQ 167

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ +IA +L +S  TV +++ +   KL   +R QA     R G +
Sbjct: 168 GLSNGQIAARLVISERTVKSHVNNILGKLQVSDRTQAAIYVWREGMV 214


>gi|284028851|ref|YP_003378782.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808144|gb|ADB29983.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 252

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR     +  V   S  ++L   V +E       V         + +     L+ERE   
Sbjct: 129 VRAVHRGDSLVDPASTRVLLERCVELERQVGADPVAAAPHAADGRWTGLLAQLSERERDV 188

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G ++ ++A KL +S  TV  ++ S   KL   +R+QA+  A   G +
Sbjct: 189 LVWMARGLSNRDLANKLFVSETTVKTHVSSVLSKLGLSSRVQAVVVAYEAGVV 241


>gi|298491036|ref|YP_003721213.1| LuxR family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298232954|gb|ADI64090.1| transcriptional regulator, LuxR family ['Nostoc azollae' 0708]
          Length = 91

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    S    +L++RE   + L   G T++EIA KL +S  TV+ ++ +   K    NR+
Sbjct: 1   MAASESGTPVSLSDRELQIIDLVAGGLTNQEIAAKLEISKRTVDNHISNILTKTKTDNRV 60

Query: 223 QAIAKAIRFGYIC 235
             +  A+++G +C
Sbjct: 61  ALVRWALQWGKVC 73


>gi|205360584|ref|ZP_02684908.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348365|gb|EDZ34996.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 248

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|298245147|ref|ZP_06968953.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552628|gb|EFH86493.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L     G +++EIA+ L +S  TV  ++ S   KL   +R  A+  A+R G
Sbjct: 163 PLSSREVEILDYIARGNSNKEIAKSLKISDQTVKNHITSILKKLSVSDRTAAVVHALRHG 222

Query: 233 YI 234
           +I
Sbjct: 223 WI 224


>gi|290961496|ref|YP_003492678.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260651022|emb|CBG74140.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 213

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178
           +R G     Y     + L  A   +   H     +V    L   +  S   R  +LTERE
Sbjct: 97  LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVADALLSQEEANSGQGRGGSLTERE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 157 KEVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 211


>gi|257057888|ref|YP_003135720.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587760|gb|ACU98893.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 216

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 151 GACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G    V+ ++  +            LTERET  L+L   G T+++IA++L +S  TV  +
Sbjct: 128 GLAGMVLGEYRRMADSPDMGDPPPRLTERETEVLRLVAKGLTAKQIADRLVISHRTVENH 187

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + S   KL   NR++    AI  G 
Sbjct: 188 VQSTLRKLQLHNRVELARYAIEHGL 212


>gi|295697536|ref|YP_003590774.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295413138|gb|ADG07630.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 278

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K       LT+RE   LQL  +G ++ +IA+ L LS  TV  ++ S   KL   +R Q
Sbjct: 205 EDKAPGIVAPLTKREFEVLQLLAEGRSNRDIAKALVLSEKTVKNHVASILDKLVVRDRTQ 264

Query: 224 AIAKAIRFGYI 234
           A+  A+R G++
Sbjct: 265 AVLVALRRGWV 275


>gi|156977745|ref|YP_001448651.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116]
 gi|156529339|gb|ABU74424.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116]
          Length = 217

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L+ +++    G    +     EL  K       LT RE   L     G ++ +IA+ L +
Sbjct: 128 LSRDILNRLVGYLVNLNHTVTELDTKL---EIELTRREMQVLTALCQGGSNLDIADSLFV 184

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           S HTV ++L S   KL+  NR+QA+A A R 
Sbjct: 185 SEHTVKSHLYSIFRKLEVKNRMQAVAWAKRN 215


>gi|148272451|ref|YP_001222012.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830381|emb|CAN01316.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 232

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFH-------KNGYVIFTSEFLMLANEVIIEAHGACYQ 155
             +         AG + F V+           +       +    +   +I         
Sbjct: 90  FDLDEYAFAGLRAGASGFLVKDTRPEHLMEAIRAVADGDAAISPRVTRRMIELLGPTMPA 149

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                           R LT RE   L    +G T++EIA +L LS  TV  ++G    K
Sbjct: 150 TGGAAGTGEGAADPRLRPLTARELEVLTALAEGLTNQEIAGRLYLSESTVKTHVGRVLAK 209

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L+  +R+QA+  A   G +
Sbjct: 210 LEVRDRVQAVILAYDCGLV 228


>gi|134097553|ref|YP_001103214.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910176|emb|CAM00289.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179
           L    +G+++  +    +   + I A G           L           A  LTERE 
Sbjct: 92  LRAGASGFLLKRTRPEEIVQAIRIAAQGESLLFPAAIRRLVARRAPAARRPAPTLTEREA 151

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G ++ EIA +L + + TV  ++G+   KL A +R QA+  A   G++
Sbjct: 152 EVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGFV 206


>gi|557022|gb|AAA50358.1| putative transcription factor; similar to E. coli NarL, Swiss-Prot
           Accession Number P10957 [Nostoc sp. PCC 7120]
          Length = 219

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 69/224 (30%), Gaps = 29/224 (12%)

Query: 11  SSSLQELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
             + QEL P L   I      +++ +Y I+S        Q I           +   +  
Sbjct: 10  IRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSI------PAVCLESNPVGR 63

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                    H    L P  W+                           +  P+       
Sbjct: 64  YVVERHAPAHEQLILTPEDWKD--------------FCPRHDHG--HVMTGPIICDGRLI 107

Query: 130 GYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183
           G + F  +    A     + +    C  +      L       +SS+   LT RE    +
Sbjct: 108 GTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSPSPLTPRELQIAE 167

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L   G T+ EIAEKL ++ ++V   L     KL    R + +A+
Sbjct: 168 LVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVAR 211


>gi|291009185|ref|ZP_06567158.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179
           L    +G+++  +    +   + I A G           L           A  LTERE 
Sbjct: 109 LRAGASGFLLKRTRPEEIVQAIRIAAQGESLLFPAAIRRLVARRAPAARRPAPTLTEREA 168

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G ++ EIA +L + + TV  ++G+   KL A +R QA+  A   G++
Sbjct: 169 EVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGFV 223


>gi|222082720|ref|YP_002542085.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727399|gb|ACM30488.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 217

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSSA---ARNLTERETS 180
           G         + E L+   +++++        ++   L    + S A      LT RE  
Sbjct: 99  GASGYLLKDVSRESLLRTIDIVLDGQAFFDADLMCKMLARIDRESPAEMVIERLTNRERE 158

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L     G T++ IA  L +S  TV  ++     KL   +R QA   AI+ G +
Sbjct: 159 ILCSLTTGETNKGIARALSISPGTVKVHVERILSKLGVNDRTQAAVLAIQAGLL 212


>gi|271963222|ref|YP_003337418.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506397|gb|ACZ84675.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L   ++  A G      +    L  + R+  + +L+ RE   L L
Sbjct: 96  AGAAGYLLKDTSRADLLAAIVSAARGETVLSPSVATRLVTRMRAPVSESLSPREAEVLSL 155

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T+ +I ++L +S  TV  +L     KL   +R  A+  A+  G +
Sbjct: 156 VARGLTNAQIGKELFISETTVKTHLLRVFGKLGVSDRTAAVTTALDRGLL 205


>gi|108757533|ref|YP_632250.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108461413|gb|ABF86598.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 246

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 1/111 (0%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                      +  L+    V  +A          +       +    + L++RE   LQ
Sbjct: 134 RAGGTVIQPNLARRLLRHFRVEPDASPLISPPAAPEPSASDLPQEPLLKPLSDREREILQ 193

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ E A  L LS  T+  +L     KL+  NR++A+ + IR G I
Sbjct: 194 LIAKGVSNSEAARLLDLSKATIRTHLEHIYRKLEVTNRVEAVTEGIRKGLI 244


>gi|325283032|ref|YP_004255573.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314841|gb|ADY25956.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 219

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+  F            +L+ RE   L+ A  G +++EIA  LG+S  TV  +LG+
Sbjct: 132 IARKVMARFSAQAPAEMDLTEDLSPRELEVLRAAARGGSNKEIARALGISPRTVQVHLGN 191

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  +R +A+   IR G++
Sbjct: 192 VFSKLNVGSRTEAVLAGIRRGWV 214


>gi|256394338|ref|YP_003115902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256360564|gb|ACU74061.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 34/82 (41%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               ++         +   A  LT RE   L L   G  + EIA  L L+  TV  ++ +
Sbjct: 135 VATALLDSGSNGAADQGPQAPALTAREREVLVLIAQGRANREIARALVLAEKTVKTHVSN 194

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
             +KL   +R QA   A+R G 
Sbjct: 195 ILMKLGVADRTQAALWAVRHGI 216


>gi|94985726|ref|YP_605090.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94556007|gb|ABF45921.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 194

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              Q+          R        LT RE+  L L   GY+++EIA+ LG+S  TV  +L
Sbjct: 109 LARQLRDIVAHPDVDRLPQVDVPRLTPRESEVLPLLAQGYSNKEIAKNLGVSPDTVKDHL 168

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KLDA +R +A+++A   G +
Sbjct: 169 ARLYAKLDAGDRTEAVSRARSIGLL 193


>gi|312138083|ref|YP_004005419.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325675013|ref|ZP_08154700.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|311887422|emb|CBH46734.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325554599|gb|EGD24274.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 220

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LTERE   L +  +G ++ +I  +L L   TV +++ +   KL   NR++A  +A
Sbjct: 154 PDLSRLTEREREVLTVLAEGESNADIGRRLFLGETTVKSHVSAIFEKLGVRNRVEAALQA 213

Query: 229 IRFGYI 234
            R G +
Sbjct: 214 YRAGLV 219


>gi|271969975|ref|YP_003344171.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513150|gb|ACZ91428.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LTERE   L L   G +++EIA +L LS  T   ++     KL A +R Q +  A
Sbjct: 150 PEFNGLTEREREVLTLVAGGLSNDEIAARLVLSPATAKTHVSRIMTKLHARDRTQLVVLA 209

Query: 229 IRFGYI 234
              G +
Sbjct: 210 YEAGVV 215


>gi|296128146|ref|YP_003635396.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296019961|gb|ADG73197.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 225

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+T         + A+  LT RE   L L   G ++EEIA +L L V TV ++L 
Sbjct: 138 RVLREVVTRRRTQPVTAARASELLTPRELDILLLLAQGMSNEEIARELYLEVSTVKSHLA 197

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
            A  KL   +R+QA+  A + G +
Sbjct: 198 RAMPKLGVRSRLQAVVWAYQNGIV 221


>gi|319644871|ref|ZP_07999104.1| sensor regulator [Bacillus sp. BT1B_CT2]
 gi|317392680|gb|EFV73474.1| sensor regulator [Bacillus sp. BT1B_CT2]
          Length = 199

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S A  LT+RE   L+L  DG  ++EIA++L +   TV  Y+     KL+  NR
Sbjct: 126 ELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITRSKEKGW 197


>gi|224542843|ref|ZP_03683382.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524239|gb|EEF93344.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM
           15897]
          Length = 224

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++ E   +Q  G G +++EIA+KL LS  TV  YL S   KL+  +R Q    A+  
Sbjct: 155 ETLSKPEWKVIQHVGYGLSNKEIAQKLFLSEGTVRNYLSSILSKLNLRDRTQLAIWAVES 214

Query: 232 GY 233
           G 
Sbjct: 215 GL 216


>gi|161506311|ref|YP_001573423.1| hypothetical protein SARI_04507 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867658|gb|ABX24281.1| hypothetical protein SARI_04507 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 257

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N        +     LHN    +            D      
Sbjct: 48  LQSIAQLIPLSSAVFYRVN-----DYLKPEGYVLHNISNGTHQQYLEH-FQPLDPL--SP 99

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 100 SRFGQQVITVATMTPGICARHRLYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 158

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  +  +  A  LT +E   + +  +G +++ IA +L +
Sbjct: 159 FSSEERLRAQAVQPLLGLAIHDSLQGDNDLASILTAKEREIVGMVCEGASNKLIARQLNI 218

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 219 SLSTVKTHLRNIFAKTEVINRTELVSR 245


>gi|52081161|ref|YP_079952.1| two-component response regulator responsible for cold induction of
           the des gene [Bacillus licheniformis ATCC 14580]
 gi|52786544|ref|YP_092373.1| YocG [Bacillus licheniformis ATCC 14580]
 gi|52004372|gb|AAU24314.1| two-component response regulator responsible for cold induction of
           the des gene [Bacillus licheniformis ATCC 14580]
 gi|52349046|gb|AAU41680.1| YocG [Bacillus licheniformis ATCC 14580]
          Length = 199

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S A  LT+RE   L+L  DG  ++EIA++L +   TV  Y+     KL+  NR
Sbjct: 126 ELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITRSKEKGW 197


>gi|317506595|ref|ZP_07964387.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255104|gb|EFV14382.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 218

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLT 175
           L     G+++  S    L   V   A            +V+  +      ++  A+  LT
Sbjct: 97  LRAGAAGFILKDSPAEDLIWAVRAVAGGDGFLDPAVTARVLAAYRTAPSARQKQASDKLT 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L+L   G  + EIAE+L +S  TV +++G    KL   +R  AI  A   G +
Sbjct: 157 ARELEVLRLIARGANNTEIAERLFISEVTVKSHIGRIFAKLGLRDRAAAIVYAYDQGVV 215


>gi|304404571|ref|ZP_07386232.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346378|gb|EFM12211.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK--RSSAARNLT 175
                GYV+  +    L   +   A G  Y       +++ D++E  K+        +L+
Sbjct: 96  HAGAAGYVLKNAPHEELLTAIRSVARGDAYLYPTATKRLMNDYVERMKRGESGDVYHSLS 155

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L L   GY ++EIAE+L +SV TV  +  +   KL    R + I  A++ G +
Sbjct: 156 DREKEVLGLTAKGYANKEIAEQLVISVKTVETHKSNVMEKLGLKTRPELIKYAMKKGLL 214


>gi|297155663|gb|ADI05375.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 221

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 138 FLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            ++ A + ++            T    +   R+     LT RE   L+L G G ++ EIA
Sbjct: 116 RMVAAGDSLLAPSVTRTLIAAFTSGAVVPPPRTERLDVLTARERETLRLLGCGLSNAEIA 175

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L +S HTV  ++ +   KL   +R+QA+  A   G +
Sbjct: 176 AALVVSEHTVKTHVSNILTKLGLRDRVQAVIAAYETGMV 214


>gi|294628886|ref|ZP_06707446.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
 gi|292832219|gb|EFF90568.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
          Length = 222

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                 A  LTERET  L+L   G + ++IAE+L +S  TV  ++ +   KL   NR++ 
Sbjct: 151 DGPEPGAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVEL 210

Query: 225 IAKAIRFGY 233
           +  AI  G 
Sbjct: 211 VRYAIERGL 219


>gi|258652230|ref|YP_003201386.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555455|gb|ACV78397.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 212

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  +      +LT RE+  LQL G G ++++ A +LG+SVHTV  ++     KL A +++
Sbjct: 129 IASRPRPPGGDLTPRESEVLQLVGAGRSNQQTARELGISVHTVRNHVQHILDKLGAHSQL 188

Query: 223 QAIAKAIRFGYI 234
           +A+A A R G +
Sbjct: 189 EAVAIASRLGLL 200


>gi|302550880|ref|ZP_07303222.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468498|gb|EFL31591.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 228

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +R+       +   +   +++            Q   D  +    R     +LT RE   
Sbjct: 118 IRIAAGGQALLSPAATTGLISR-------FLAQQDPDDAGDRDPARGERLASLTGREREV 170

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G++++EIAE+L +S  TV  ++  A  KL A +R Q +  A   G +
Sbjct: 171 LVLVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 223


>gi|225873707|ref|YP_002755166.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794522|gb|ACO34612.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 213

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 7/149 (4%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML----ANEVIIE 148
                  +  +   R+         +      G       +       L      + +  
Sbjct: 62  DLRLPRMNGVEAITRIREESPGARIVVLTTFDGDEDIYRALQAGARGYLLKGMDADDLTA 121

Query: 149 AHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           A  + +   +    +  +R +   +   LT RE   L+L   G ++ EIA  L +S  TV
Sbjct: 122 AIRSVHAGKSRIPTVVAERLAERMSGSELTARELDVLRLIVQGRSNREIAADLHISEATV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++ +   KL   +R QA   A++ G +
Sbjct: 182 KTHINNLLSKLGVSDRTQAATTALQRGLV 210


>gi|319441505|ref|ZP_07990661.1| LuxR family two component transcriptional regulator
           [Corynebacterium variabile DSM 44702]
          Length = 232

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + +  +     LT RE   L L G G +++EIAEK  +S HT   ++     K++A +R 
Sbjct: 157 VSEDAAKDLARLTGREQEVLLLVGQGLSNQEIAEKFFISPHTAKTHVNRIMSKINAHDRA 216

Query: 223 QAIAKAIRFGYI 234
           Q +  A   G +
Sbjct: 217 QLVILAYESGLL 228


>gi|297560440|ref|YP_003679414.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844888|gb|ADH66908.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 234

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 4/198 (2%)

Query: 37  TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96
            ++   +    ++ +        D   +   +    G +      S   P+  +      
Sbjct: 27  HLSVVGEASDGREAVRATRGLLPDVVLMDVRMPGMDGIEATRQIVSWARPLGHRVRVLAL 86

Query: 97  VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156
                 + +V +       +G              V   ++     +  +   +    + 
Sbjct: 87  TTFDLDEYAVEVLRAG--ASGFLLKDAPPAELVSAVEVVADGAAAISPAV--LNRLLDRF 142

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                        A   LT RE   L+L   G+++ EIA  L L   TV +++GS   KL
Sbjct: 143 APLLPSASPATEPAEDTLTAREHEVLRLLARGWSNAEIAAHLVLGETTVKSHVGSILTKL 202

Query: 217 DAVNRIQAIAKAIRFGYI 234
           +  +R+QA+  A   G +
Sbjct: 203 ELRDRVQAVVYAYEHGLV 220


>gi|116329279|ref|YP_798999.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330114|ref|YP_799832.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116122023|gb|ABJ80066.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123803|gb|ABJ75074.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 221

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L+L  +G ++E I + LG+S  TV  +  +   KL+       +  AIR G 
Sbjct: 159 LSDREREILKLVAEGNSNESIGKILGISPATVKVHRANIMKKLNLHKVADLVMYAIRAGL 218

Query: 234 I 234
           I
Sbjct: 219 I 219


>gi|329297529|ref|ZP_08254865.1| LuxR family two component transcriptional regulator [Plautia stali
           symbiont]
          Length = 198

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V         ++              E+++       Q       V
Sbjct: 61  LRHEGVAACILVLTVSDARSDIYAMMDAGADGYQLKDSEPELLLAQVMRGAQGENVFREV 120

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + ++L   +  ++  R LTERE   LQ    G +++EIA  L +S  TV  ++ +   KL
Sbjct: 121 VAEYLATRQPSANPFRQLTERELDVLQEVARGLSNKEIAATLHISEETVKVHIRNLLRKL 180

Query: 217 DAVNRIQAIAKAIR 230
           D  +R+ A    + 
Sbjct: 181 DVRSRVAATVLWLE 194


>gi|271961678|ref|YP_003335874.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504853|gb|ACZ83131.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               GY++  S    +   V   A G            L + R+ A   L+ RE + L L
Sbjct: 97  AGAIGYLLKDSPREEVFRAVRAAALGETVLSPAVAARLLNRVRTPAPAELSGRERTVLAL 156

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T++E A  L +S  TV  +L     KL   +R  A+A A   G +
Sbjct: 157 VARGSTNKEAAAALFISETTVKTHLAHIYTKLGVSDRASAVAVAYSRGLL 206


>gi|330467719|ref|YP_004405462.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810690|gb|AEB44862.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 211

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              + I          +   ++LTERE   L+L   GY++ EIA  L L+  TV  ++  
Sbjct: 128 RMLRAIRSGPSPAGPDAPTVQSLTEREREVLRLVAHGYSNREIAGALFLAEGTVKNHVSM 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A +R  A+ +A+  G +
Sbjct: 188 ILTKLGARDRTNAVLRALHEGIL 210


>gi|288962256|ref|YP_003452551.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914522|dbj|BAI76007.1| two-component response regulator [Azospirillum sp. B510]
          Length = 240

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 40/102 (39%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
            F  + + L    + E      +         +   + A  LT+RE   L +   G T++
Sbjct: 130 SFVPKDVALDLMHMTEMSLDIDEAEESEAPALEGEGAPASPLTDREQQVLSMLATGATNK 189

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI   L L   TV  +      KL A NR  A+ +A + G +
Sbjct: 190 EIGRNLSLQEVTVKLHTRRILRKLGARNRTDAVRRAQQAGLL 231


>gi|239944210|ref|ZP_04696147.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990666|ref|ZP_04711330.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447682|ref|ZP_06587072.1| two-component system regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291350629|gb|EFE77533.1| two-component system regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 224

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEI 194
            ++ + + ++  +     ++         R+        LTERET  L L   G ++ EI
Sbjct: 120 RVVASGDALLSPNITKRLIVEFSRTAGAPRAPLKERVGDLTERETEVLTLIASGLSNAEI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++G   VKL   +R QA   A   G +
Sbjct: 180 ARQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219


>gi|332702953|ref|ZP_08423041.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553102|gb|EGJ50146.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 225

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
               +V+   LE   +R+    +    LT+RE   ++L  DG+TS  IA KL ++  TV 
Sbjct: 131 AISPKVVQKLLEFSTRRAQMTDSAYGSLTQREQQIMRLLADGWTSSAIAGKLFITRKTVE 190

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  +   KL   N    +  A R G I
Sbjct: 191 NHRANIMSKLGLKNLADLVRYAARLGLI 218


>gi|307707707|ref|ZP_07644186.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307616205|gb|EFN95399.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 199

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G++++EIA+KL LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|226226404|ref|YP_002760510.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089595|dbj|BAH38040.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 209

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A  A  + I   +        A+  LT R+   L+   +G ++ EIA  L +S  TV A+
Sbjct: 121 AVYAGRKAIDPSIAAKLAEHVASDALTARQLEVLRSLAEGRSNIEIANTLYISEGTVKAH 180

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL A +R QA+   I+ G I
Sbjct: 181 IKAILQKLGARDRTQAVTIGIKRGLI 206


>gi|221633170|ref|YP_002522395.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum
           DSM 5159]
 gi|221156902|gb|ACM06029.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum
           DSM 5159]
          Length = 261

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                 + I++      +V+ +            S    LT RE   L     G +++EI
Sbjct: 151 GEDRLPQQILDRPHLARRVLGELQRYVVGEAGLESPDAVLTVRELQVLDCVAQGMSNKEI 210

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L ++  TV  ++ S   KL A +R+  I  A+R G++
Sbjct: 211 AEALFITEQTVKNHMTSILRKLGAQDRVDVILAAVRQGWV 250


>gi|54308044|ref|YP_129064.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum SS9]
 gi|46912470|emb|CAG19262.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum SS9]
          Length = 208

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156
           +    +  + +   V         ++              + +I               +
Sbjct: 71  MRAEGILASIVVLTVSDSRSDVKALVAAGADGYLLKDTEPDELISLLKQALCGGKAYSDI 130

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + + LE   ++      LT+RET  LQ    GY +++IA+ L +S  TV  ++ S   KL
Sbjct: 131 VREHLESNTEQDCLLSLLTDRETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKL 190

Query: 217 DAVNRIQAIAK 227
              +R  A   
Sbjct: 191 QVKSRTAATVL 201


>gi|313158308|gb|EFR57710.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 211

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 2/142 (1%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY-VIFTSEFLMLANEVIIEAHGAC 153
           E  +     L +         +  +  V+ G            + +   + V+       
Sbjct: 68  ERALARRPDLRIITLSMFGEESYYSRMVQAGARGFLLKDSDIGDVIEAIDAVMSGGSYFS 127

Query: 154 YQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            Q+++     +  +       L+ RE   L     G +++EIA++L +S  TV+ +  + 
Sbjct: 128 PQLLSSLTGRMRTRDDVPDEQLSVREREILVAVCRGLSNQEIADELFISKRTVDKHRANI 187

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             K    N    +  AIR G +
Sbjct: 188 LEKTGCKNTASLVVYAIRNGIV 209


>gi|312196323|ref|YP_004016384.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227659|gb|ADP80514.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 221

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----------FKKRSSAARN 173
           L    +G+++       L   V + A G      +    L              +     
Sbjct: 96  LRAGASGFLLKDVRRDELVRAVRLVAAGESLLAPSVTRRLIADVVGRGAARPALARRLDE 155

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE+  L+L G G ++ EIA  L +S HTV +++ S   KL   +R QA+  A   G 
Sbjct: 156 LTERESETLRLLGRGLSNSEIAATLVVSEHTVKSHVSSVLTKLGLRDRAQAVVFAYESGL 215

Query: 234 I 234
           I
Sbjct: 216 I 216


>gi|307709859|ref|ZP_07646308.1| DNA-binding response regulator [Streptococcus mitis SK564]
 gi|307619408|gb|EFN98535.1| DNA-binding response regulator [Streptococcus mitis SK564]
          Length = 199

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G++++EIA+KL LS 
Sbjct: 108 ADLMHTLHTVLEGGKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 79/227 (34%), Gaps = 12/227 (5%)

Query: 14  LQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70
           + +       +++ ++   F++    N+   +   QQ      + +  +   D    L +
Sbjct: 8   VDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVDGYQFLKQ 67

Query: 71  TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
              D          LP+++   + +  + +      +   L     P   +A    L   
Sbjct: 68  LREDP-----RFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLLIR 122

Query: 128 KNGYVIFTSEFLM-LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
           +N     T+E         +         ++T    + +  +    +LT RE S L L  
Sbjct: 123 RNSKPQKTTEEGETPDIAELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVA 182

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +G  ++EIA +L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 183 EGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|331694203|ref|YP_004330442.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948892|gb|AEA22589.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 235

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 15/146 (10%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ------- 155
           + + R+       A +     +        +       L+ +   +A G           
Sbjct: 88  EATRRVRAAHPGTAVVVLTTYVDDDAIVAALRAGAAGWLSKDADADAIGRALHSAADGQG 147

Query: 156 -----VITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                 +   +   +   +       LT RE   L L   G ++ EIA +L +   T+  
Sbjct: 148 TIDAGALARLVAASQPAPAGGEPPDGLTPREVEVLALIAQGLSNREIARRLVVGEATIKT 207

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++     K    +R QA+  A R G 
Sbjct: 208 HVNHLFAKAGLRDRAQAVNYAYRHGL 233


>gi|296118498|ref|ZP_06837076.1| DNA-binding response regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968397|gb|EFG81644.1| DNA-binding response regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 206

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L ++     ++L+ RE   LQ    G +++++A+++ +S  TV  +L     KL   NR 
Sbjct: 135 LAERVGRPQQSLSAREIEILQALATGASNKQLAKQMFISEATVKTHLIHIYQKLGVDNRT 194

Query: 223 QAIAKAIRFGYI 234
            A+  A     I
Sbjct: 195 AAVTVARERKLI 206


>gi|24379934|ref|NP_721889.1| putative response regulator [Streptococcus mutans UA159]
 gi|290580086|ref|YP_003484478.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24377915|gb|AAN59195.1|AE014986_6 putative response regulator [Streptococcus mutans UA159]
 gi|254996985|dbj|BAH87586.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 198

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +   ++           ++  EL ++ +  +  L+ERE   LQL   G +++ IAE+L
Sbjct: 103 DRSASELMATIYTVLSGQREYSPELVEEVTFDSNPLSEREQEVLQLVAKGASNQTIAEQL 162

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            LS  T+  Y+ +   KL+A NR  A+  A   G+
Sbjct: 163 FLSNGTIRNYMTAIFNKLNANNRTDAVRIARENGW 197


>gi|15903856|ref|NP_359406.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|116516134|ref|YP_817220.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|168495059|ref|ZP_02719202.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|221232724|ref|YP_002511878.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|15459500|gb|AAL00617.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076710|gb|ABJ54430.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|183575076|gb|EDT95604.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|220675186|emb|CAR69771.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|332071979|gb|EGI82467.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 199

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|186684363|ref|YP_001867559.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466815|gb|ACC82616.1| transcriptional regulator, LuxR family [Nostoc punctiforme PCC
           73102]
          Length = 87

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 41/73 (56%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +   +S    +L++RE   + L   G T++EIA KL +S  TV+ ++ +   K +  NR+
Sbjct: 1   MAGGKSETPVSLSDRELQIIDLVAAGLTNQEIAGKLEISKRTVDNHISNILTKTETENRV 60

Query: 223 QAIAKAIRFGYIC 235
             +  A+++G +C
Sbjct: 61  ALVRWALQWGKVC 73


>gi|154487087|ref|ZP_02028494.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis
           L2-32]
 gi|154084950|gb|EDN83995.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis
           L2-32]
          Length = 249

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 184 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 243

Query: 229 IRFGYI 234
                +
Sbjct: 244 YENHLV 249


>gi|168819831|ref|ZP_02831831.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343483|gb|EDZ30247.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087570|emb|CBY97334.1| Transcriptional activator protein luxR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 227

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 18  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 70  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ ++    LT +E   + +  +G +++ IA +L +
Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|73748496|ref|YP_307735.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669277|ref|YP_001214095.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|289432544|ref|YP_003462417.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73660212|emb|CAI82819.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270225|gb|ABQ17217.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
 gi|288946264|gb|ADC73961.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 224

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA   LTERE   L++A  G ++++IA++L LS  T+  +L +   KL   +R +AI   
Sbjct: 153 SAVNPLTEREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYG 212

Query: 229 IRFGY 233
           ++ G+
Sbjct: 213 LKRGW 217


>gi|94971954|ref|YP_593994.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554005|gb|ABF43920.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 208

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +   V          V + +L L   R   A +L+ RE   L+L   G +++ IA  L 
Sbjct: 114 DVVRRVAAGELFIQPSVASKYLHLLTTRQLGAEHLSPREEDVLRLLARGLSNKAIARDLA 173

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +S  TV  ++ S   K+   NR +A   A R
Sbjct: 174 ISESTVKNHVKSILAKMQVRNRTEAALNASR 204


>gi|329938110|ref|ZP_08287561.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302599|gb|EGG46489.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 223

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 40/119 (33%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           +G              V        L    +       Y           +       LT
Sbjct: 101 SGFLLKDSGPERLLAAVTAVRGGDALFAPSVTRRLVEAYAGRAGHRPRDAEPPPELGALT 160

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L L G G ++ EIA++L +S  TV  +L     KLD  +R QA+  A   G +
Sbjct: 161 TREVEVLGLIGRGLSNLEIADRLYISEATVKTHLNRTMTKLDLDSRAQAVVVAYETGLV 219


>gi|296128716|ref|YP_003635966.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296020531|gb|ADG73767.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 219

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 4/126 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +    R        +   +   +L+ EV                   +  
Sbjct: 96  EALHAGAVGYLLKTSRPEQLTEAVLSAAAGEGLLSPEVTRAVIARAVA----ERRPARPA 151

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LTERE   L L   G  ++EIA +L +S  TV  ++ +   KL   +R+QA+  
Sbjct: 152 PQPVVPLTEREQDVLALVARGLNNDEIAAELVVSRATVKTHVSNLLAKLGLRDRVQAVVY 211

Query: 228 AIRFGY 233
           A   G 
Sbjct: 212 AHEHGL 217


>gi|257056663|ref|YP_003134495.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256586535|gb|ACU97668.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 239

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--------RNLT 175
           L    +G+++  +    L   V I A G           +  + S+ A          LT
Sbjct: 116 LRAGASGFLLKNASPEDLIESVRIVARGDALLSPEVTRRVIARFSAPAVTGPTRRPSELT 175

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L L   G ++ EIA +L L   TV  ++     KL+  +R  A+  A   G +
Sbjct: 176 DREFEVLSLLAKGASNAEIARQLVLGETTVKTHVSRILTKLNLRDRTHAVVFAYENGIV 234


>gi|226310595|ref|YP_002770489.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093543|dbj|BAH41985.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 209

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +++  F    +  S     LT RE   L+L G G +++EIA++L + + TV  ++ 
Sbjct: 128 RVAGKIMARFRHGQE--SHPHEQLTPRELEVLKLIGQGKSNQEIADELIIGIKTVKTHVS 185

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R QA   
Sbjct: 186 NILAKLNVEDRTQAAIY 202


>gi|186474125|ref|YP_001861467.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196457|gb|ACC74421.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 361

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  FL   +        LT RE   ++L   G  + +IA +LGLS  TV  ++ +   KL
Sbjct: 280 VRAFLPPARHIDPVFSALTRREREIVELIAGGRDNAQIAARLGLSEKTVRNHITNIFAKL 339

Query: 217 DAVNRIQAIAKAIRFGY 233
           +  +R QAI  A + G+
Sbjct: 340 EVESRAQAIVLARKAGF 356


>gi|38234803|ref|NP_940570.1| putative two component system response regulator protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38201067|emb|CAE50791.1| Putative two component system response regulator protein
           [Corynebacterium diphtheriae]
          Length = 212

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
               E ++ A  +  +  T         L  +  +   +LT RE   L+L   G ++ +I
Sbjct: 113 DAPPEELLAAVRSAAEGDTALSPTVANRLMSRVRAPRNSLTPRELEVLKLVAGGSSNRDI 172

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 173 GRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGVL 212


>gi|163847483|ref|YP_001635527.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222525334|ref|YP_002569805.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668772|gb|ABY35138.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449213|gb|ACM53479.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus sp. Y-400-fl]
          Length = 916

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L+L  +G +++EIA  L +++ TV +++ +   KL   +R QA+A+  R 
Sbjct: 853 EPLSQREIEVLRLMAEGRSNQEIAGHLIIAISTVKSHVNNIFSKLGVASRTQAVARGRRL 912

Query: 232 GYI 234
           G I
Sbjct: 913 GLI 915


>gi|297563570|ref|YP_003682544.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848018|gb|ADH70038.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 219

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G ++ EIA  L +S  TV  ++     KLD  +R+QA+  A R G 
Sbjct: 158 LTPRELEVLRLIANGLSNGEIAASLFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGL 217

Query: 234 I 234
           +
Sbjct: 218 V 218


>gi|297562061|ref|YP_003681035.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846509|gb|ADH68529.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 218

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                   + R   A  LT RET  L+L   G   ++IA++LG+S  TV  ++ +   KL
Sbjct: 140 YRRLSSADRSREPEAPELTPRETEVLRLVAKGLAYKQIAQRLGISHRTVQNHVQNTLTKL 199

Query: 217 DAVNRIQAIAKAIRFGY 233
              NR++ +  AI  G 
Sbjct: 200 HLHNRVELVRYAIDRGL 216


>gi|182440789|ref|YP_001828508.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178469305|dbj|BAG23825.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 224

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA----R 172
           L    +G+++  +  + LA  V I A G          ++I +F  L             
Sbjct: 96  LRAGASGFLLKNASGVELAEAVRIVAAGEALLSPEITKRLIAEFSRLSTSTKRPTQVRID 155

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RET  L L   G ++ EIA +L ++  TV  ++G    KL   +R QA   A   G
Sbjct: 156 ELTHRETEVLALVAQGLSNAEIAGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETG 215

Query: 233 YI 234
            +
Sbjct: 216 LV 217


>gi|56696847|ref|YP_167209.1| ATP-dependent transcription regulator LuxR [Ruegeria pomeroyi
           DSS-3]
 gi|56678584|gb|AAV95250.1| autoinducer-binding transcriptional regulator, LuxR family
           [Ruegeria pomeroyi DSS-3]
          Length = 249

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 62/227 (27%), Gaps = 10/227 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIE 70
            +L+EL                     N               L N+D    D       
Sbjct: 12  RTLEELWDGHTRQMAEYGFDRLLYGYTNYRTATSLGDPEDFVILTNHDQSYIDGFMQEGL 71

Query: 71  TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFP---VRL 124
            +    L           W     + +   +    +            AG       V  
Sbjct: 72  YFHAPMLHWALEHEGAGSWRMISDMLDSETLTPQERRVYAFNAEHGVTAGYTVSFTSVSA 131

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSC 181
                  +           + +   HG    ++ +   L           R+LT R+   
Sbjct: 132 RTKGAISLCARKGMSQDEVDALWRTHGQDILLMNNVAHLKIMTLPYVAPNRSLTRRQREA 191

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LQ  GDG T+++IA  +GL+  TV  +L  A   L      QA+ KA
Sbjct: 192 LQWVGDGKTTQDIAILMGLTAATVEKHLRLAREALSVETTAQAVLKA 238


>gi|300869019|ref|ZP_07113622.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300332999|emb|CBN58814.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 228

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G +++EIA+ L ++  TV  ++ +   KL+  +R QA   AI+ G
Sbjct: 158 PLTKREQEILALVAAGKSNQEIAQILYIASGTVRVHVHAILQKLEVRDRTQAAVVAIQKG 217

Query: 233 YI 234
            +
Sbjct: 218 LV 219


>gi|239980308|ref|ZP_04702832.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452173|ref|ZP_06591563.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355122|gb|EFE82024.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 229

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++  +            +          R +    LT RE   + L   G ++ 
Sbjct: 120 VHSGDAVVAPSTTRRLLDRFAPMLPDASAA---PRHAGLDRLTGREREVMVLVAQGLSNG 176

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  L LS  TV  ++G    KL   +R+Q +  A   G +
Sbjct: 177 EIAAHLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 218


>gi|284030612|ref|YP_003380543.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809905|gb|ADB31744.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 227

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R      LT+RE   L L   G T+ EIA +L +   TV  ++    +KL   +R+QA+ 
Sbjct: 152 RPDLVAELTDREREVLGLIARGLTNTEIAGQLFVGEATVKTHVSRVLLKLGLRDRVQAVV 211

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 212 FAYECGLV 219


>gi|317492747|ref|ZP_07951172.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919270|gb|EFV40604.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 210

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQV--------- 156
           L    +    I   V         ++       L   +E  I                  
Sbjct: 73  LRNEGVDARIIILTVSDSRSDVYALVDAGADGYLLKDSEPEILLSQIHQAASGKNVFSDT 132

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I+++L    + +    +LTERE   LQ    G ++++IA +L +S  TV  ++ +   KL
Sbjct: 133 ISEYLSSRTELTDPFADLTERELDVLQEVARGLSNKQIASQLHISEETVKVHIRNLLRKL 192

Query: 217 DAVNRIQAIAKAIRF 231
           D  +R+ A    +  
Sbjct: 193 DVRSRVAATVLYLEN 207


>gi|209523263|ref|ZP_03271819.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209496414|gb|EDZ96713.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 220

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                    +      ++LT RE   L+L G GY++ EIA++L +S  TV  ++ S    
Sbjct: 135 AARSKASRDEPLPDNLQDLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSS 194

Query: 216 LDAVNRIQAIAKA 228
           L+  +R Q    A
Sbjct: 195 LNLRDRTQVALLA 207


>gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
 gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
          Length = 212

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN--LTERETS 180
               G++   + F  + + V+    G                + R   A    L+ RE  
Sbjct: 98  HGARGFLEKAASFSEITDAVLQIGAGGTIIAPFAQDVLARELRTRQDTAERPVLSPREIE 157

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+LA DGY+ ++IA +L +S+ TV  +L     KLD  +R  A+A+AIR G++
Sbjct: 158 ILRLAADGYSGQKIASELHISLATVKTHLQHIYDKLDVSDRASAVAQAIRRGFL 211


>gi|206890511|ref|YP_002248221.1| response regulator UvrY [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742449|gb|ACI21506.1| response regulator UvrY [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 213

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ERE     +   G +  EI+++L +S+ TV+ Y      KL   N  + I  A
Sbjct: 147 PPHEKLSEREFQVFLMIAKGKSLIEISKELSISIKTVSTYRARILEKLGLENNAEIINYA 206

Query: 229 IRFGYI 234
           I+ G I
Sbjct: 207 IKHGLI 212


>gi|54022382|ref|YP_116624.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54013890|dbj|BAD55260.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 220

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                +   +A   LT+RE   + L  +G T+ EI  +L LS  T   ++     KL A 
Sbjct: 141 AAHAKQPPPAALAELTDREREVMALVAEGLTNAEIGARLYLSPATARTHVSRILTKLGAR 200

Query: 220 NRIQAIAKAIRFGYI 234
           +R Q +  A   G +
Sbjct: 201 DRTQLVVLAYESGLV 215


>gi|119715261|ref|YP_922226.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535922|gb|ABL80539.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 218

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 155 QVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +VI +F  L ++   AA   LT RE    +L   G ++ EI  +L +S  TV  ++    
Sbjct: 133 RVIREFTRLRRQPPPAAVATLTGRELEVFRLITQGLSNAEIGRELFISDTTVKTHVTRLF 192

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KLD  +R QAI  A + G 
Sbjct: 193 QKLDLRDRAQAIVLAYQTGI 212


>gi|315093205|gb|EFT65181.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 218

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +      +     ++        +     +      S A  LT RE    +L   G ++ 
Sbjct: 109 LVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLTAREIEVAKLVARGLSNA 168

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +IAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 169 QIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|302554629|ref|ZP_07306971.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472247|gb|EFL35340.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 235

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 155 QVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           +++    E   +  +       LT RET  L L  DG +++EIA +L +S  TV  ++ +
Sbjct: 148 RLLERLAEGGTRPPAPPEVPDGLTARETEVLVLIADGLSNQEIARRLHVSTATVKTHINN 207

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              K    +R QA+  A   G +
Sbjct: 208 LFTKTGLKDRAQAVRYAYGKGLV 230


>gi|269836898|ref|YP_003319126.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786161|gb|ACZ38304.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 242

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +     L+ RE   L     G +++EIA  L ++  TV  ++ +   KL   +R
Sbjct: 160 RASAPLAPGLLPLSPREMEVLDCVAQGLSNKEIANTLYITEQTVKNHITAVYKKLHVQDR 219

Query: 222 IQAIAKAIRFGYI 234
           +QA+  A+R G++
Sbjct: 220 VQALTCAVRRGWV 232


>gi|328951621|ref|YP_004368956.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451945|gb|AEB12846.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 222

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 46/96 (47%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   EV+++   A   +     +     ++ A  LTERE   L+L   G T++EIA++
Sbjct: 116 RRVHQGEVLLDGELAEQIIQDFRAKREALTTAPAAELTEREVQILRLLAQGATNQEIADE 175

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LGLS  TV   L     KL   NR QA   AIR G 
Sbjct: 176 LGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREGL 211


>gi|126740030|ref|ZP_01755720.1| Possible LuxR family protein [Roseobacter sp. SK209-2-6]
 gi|126718849|gb|EBA15561.1| Possible LuxR family protein [Roseobacter sp. SK209-2-6]
          Length = 207

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 9/183 (4%)

Query: 52  CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111
                Y           +    D  +    S    + W+ +QE      +          
Sbjct: 34  YVKSTYSKAWVARYVERLFIQTDPTVQFGLSRTGHVTWKQLQELYPESKT---FFDEAAL 90

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
                G    +R+   +   +  +          + +A      V+     L K R    
Sbjct: 91  FGLRHGNTLSLRI-DGQISVLSCSGSPWNEQELRMADAALRGLAVL-----LSKPREGRD 144

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L ER    L L   G   +EIAE L + + TV A    A    +     Q I++ I+ 
Sbjct: 145 FGLPERVKDVLALMVSGARDQEIAEILSIKIETVRARRQLAFQLTNTRTIAQLISEVIKN 204

Query: 232 GYI 234
           G I
Sbjct: 205 GLI 207


>gi|94970774|ref|YP_592822.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552824|gb|ABF42748.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 211

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 21/151 (13%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC----------- 153
            + L    +        +R  F +   +I T+       +  + A  A            
Sbjct: 59  LMDLRLPGISGTDALISIRGEFPRARVIILTTSDSHTEIDRALRAGAAAYILKSMPMNEM 118

Query: 154 ----YQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                 V      + ++ +S         +LT RE   L L  DG+ +++IA++L +S  
Sbjct: 119 LAVIRSVHAGARHIPQEVASRLAENIGEESLTSRELEVLHLIRDGHRNKQIADELSISET 178

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TVN ++ +   K+ A +R  A+  A+R G +
Sbjct: 179 TVNFHIKNIVGKMGANDRTHAVTIAVRRGLL 209


>gi|90577248|ref|ZP_01233059.1| transcriptional regulator, LuxR family protein [Vibrio angustum
           S14]
 gi|90440334|gb|EAS65514.1| transcriptional regulator, LuxR family protein [Vibrio angustum
           S14]
          Length = 214

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +S     L+ RE   L+    G +S++IA+ L +S  TV  +  +   KL+  +  +   
Sbjct: 146 KSPDINPLSRREERVLKHVAQGLSSKQIAKALEISYRTVETHRQNIKHKLELHSTAELAK 205

Query: 227 KAIRFGYI 234
            A+  G I
Sbjct: 206 YALEKGLI 213


>gi|37223199|gb|AAQ90194.1| LuxR [Vibrio parahaemolyticus]
          Length = 208

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 9/195 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            K+  S ++++  L  +   +   +   Y +         +  I  + NY        + 
Sbjct: 18  IKRCRSNKDINQCLSDMTKMV---HCEYYLLAIIYPHCMVKSDISIVDNYPKKWRQYYDD 74

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  + + NS   PI W  I E   +       ++         G +FP+    +
Sbjct: 75  ANLIKYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 133

Query: 128 KNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAARNLTERETSCL 182
             G + F         + +              ++ ++ ++    + +  +LT+RE  CL
Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLQACMNIPLIVPSLVDNYRKINIANNKSNXDLTKREKECL 193

Query: 183 QLAGDGYTSEEIAEK 197
             A +G +S +I++ 
Sbjct: 194 AWACEGKSSWDISKI 208


>gi|330468534|ref|YP_004406277.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811505|gb|AEB45677.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 229

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 1/132 (0%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +         +            V             D L  
Sbjct: 94  FELDEYVVGGLRAGASGFLSKDVPAEDLITAIRTVAAGDAVVAPRILRRLLDRFADVLPD 153

Query: 164 FKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                  A   LT+RE   L     G ++ EIA  L +S  T+  ++G+   KL   +R+
Sbjct: 154 PAASPPKALSTLTDREREVLGQVARGLSNAEIARALSVSETTIKTHVGNVLTKLGLRDRV 213

Query: 223 QAIAKAIRFGYI 234
           QA+  A   G +
Sbjct: 214 QAVVLAYESGLV 225


>gi|289167132|ref|YP_003445399.1| response regulator [Streptococcus mitis B6]
 gi|288906697|emb|CBJ21531.1| response regulator [Streptococcus mitis B6]
          Length = 199

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G++++EIA+KL LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KL A NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLHAGNRTEAANIAKESGWL 199


>gi|108762123|ref|YP_628591.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108466003|gb|ABF91188.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 209

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A  ++          +++A   LT RE   L L  +G +++ IA++L +S HT   ++ +
Sbjct: 125 ALAELRATPRASLPAQATAPDALTPREREVLGLLAEGLSNKAIADRLDISEHTAKFHVNA 184

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL    R +A+ +A + G +
Sbjct: 185 VLAKLGVQRRTEAVVRAAKLGLV 207


>gi|297158992|gb|ADI08704.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 228

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGY 189
           +  +  ++ + + ++ A     +++  +       S+  R    LT RE   L+L   G 
Sbjct: 114 LVAAVRMVRSGDALL-APAITRRLVERYARRDPDTSALHRDLAALTPREAEVLRLLAQGL 172

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ E+A +L LS  TV  ++     KL   +R+QA+  A   G +
Sbjct: 173 SNAELAARLHLSEATVKTHVARILAKLGLRDRVQAVVVAYETGLV 217


>gi|302546480|ref|ZP_07298822.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464098|gb|EFL27191.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 218

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178
           +R G     Y     E L  A   +   H     +V    L   +      R  +LT+RE
Sbjct: 102 LRAGAAGYVYKDVDPEALASAIRSVHAGHVVLQPEVADALLSQDEAGGGQGRGGSLTDRE 161

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA +L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 162 REVLGLIADGRSNREIARRLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 216


>gi|240080653|ref|ZP_04725196.1| NarL/NarP [Neisseria gonorrhoeae FA19]
 gi|240123586|ref|ZP_04736542.1| NarL/NarP [Neisseria gonorrhoeae PID332]
 gi|268596776|ref|ZP_06130943.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268682215|ref|ZP_06149077.1| two-component system response regulator [Neisseria gonorrhoeae
           PID332]
 gi|268550564|gb|EEZ45583.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268622499|gb|EEZ54899.1| two-component system response regulator [Neisseria gonorrhoeae
           PID332]
          Length = 218

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +R+ A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA 
Sbjct: 145 QRTQALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAA 204

Query: 226 AKAIRF 231
             AIR 
Sbjct: 205 VYAIRH 210


>gi|83942258|ref|ZP_00954719.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
 gi|83846351|gb|EAP84227.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
          Length = 220

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + + +A  +LTERE + L     G +++E+A  L +SV TV  +  +   KL   +    
Sbjct: 144 EPKDAARESLTEREQTILLQLAQGKSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGL 203

Query: 225 IAKAIRFGYI 234
              A+  G +
Sbjct: 204 TRYAMEHGVL 213


>gi|295695307|ref|YP_003588545.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
 gi|295410909|gb|ADG05401.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
          Length = 75

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L     T+ EIAE+L +S  TV  ++ +   KL+   R QA+ + +R G
Sbjct: 13  LTAREREVFELLVQDKTTREIAEQLYISEKTVRNHISNVMKKLNVKGRSQAVVELVRMG 71


>gi|260433411|ref|ZP_05787382.1| DNA-binding response regulator, LuxR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417239|gb|EEX10498.1| DNA-binding response regulator, LuxR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 214

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  K  S    LT RE + L     G +++E+A+ L +SV TV  +  +   KL   + 
Sbjct: 135 SLEPKGDSTREALTGREQTILLELAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISST 194

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 195 AGLTRYALEHGVL 207


>gi|332671033|ref|YP_004454041.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340071|gb|AEE46654.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 237

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +  ++   +  H                   A  +LTERE   L L   G ++ EI + L
Sbjct: 138 IAPSSTRRLLEHLITALPPDAPGAAADPARRAVADLTEREREVLVLMAKGRSNTEIGQDL 197

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  TV  ++G    KL A +R+QA+  A   G +
Sbjct: 198 FVAEATVKTHVGRILAKLGARDRVQAVVTAYETGLV 233


>gi|307327120|ref|ZP_07606309.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887201|gb|EFN18198.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 236

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 4/127 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +   VR     +   +      +LA  V         +            
Sbjct: 92  EALHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLVEQYTRATARPRRPD--- 148

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LT RE   L L   G ++ EIA +L +S HTV  ++G+   KL   +RIQA+  
Sbjct: 149 -PRLDMLTARERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVIC 207

Query: 228 AIRFGYI 234
           A   G I
Sbjct: 208 AYETGLI 214


>gi|223939339|ref|ZP_03631218.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891943|gb|EEF58425.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 220

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           + +LT RE + L L   G +++EI  KL +S  TV ++L S   KL+ ++R +AIA A R
Sbjct: 154 SESLTSRELAVLSLLALGKSNKEIGVKLYISETTVKSHLRSIFAKLNVISRTEAIATASR 213

Query: 231 FGYI 234
            G +
Sbjct: 214 RGLV 217


>gi|163800211|ref|ZP_02194112.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159175654|gb|EDP60448.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 222

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 152 ACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              Q IT      +  S      LT+RE   + L   G ++++IA++L +S +TV  +L 
Sbjct: 134 FSQQYITHLRRHGRPTSKPLREILTKREQQIITLLSSGASNQQIADQLLVSENTVKTHLH 193

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           +   K+D  NR+QA+  A   
Sbjct: 194 NIFKKIDVKNRVQALIWAKEN 214


>gi|328951086|ref|YP_004368421.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451410|gb|AEB12311.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 216

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 46/96 (47%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   EV+++   A   +     +     ++ A  LTERE   L+L   G T++EIA++
Sbjct: 116 RRVHQGEVLLDGELAEQIIQDFRAKREALTTAPAAELTEREVQILRLLAQGATNQEIADE 175

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LGLS  TV   L     KL   NR QA   AIR G 
Sbjct: 176 LGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREGL 211


>gi|325003494|ref|ZP_08124606.1| two component system response regulator [Pseudonocardia sp. P1]
          Length = 222

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 3/122 (2%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
              +G              +        L   +                      S    
Sbjct: 98  GGASGFLVKDSEPADLIHAIRIVHGGEAL---LAPAVTRTLIAEFAARSRGGPAVSPRLD 154

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G +++EIA +L +S  T   ++     KL A +R Q +  A   G
Sbjct: 155 ALTEREREVLAEVAAGLSNDEIAGRLHMSPTTAKTHVSRTMTKLGARDRAQLVVVAYESG 214

Query: 233 YI 234
            +
Sbjct: 215 LV 216


>gi|134103684|ref|YP_001109345.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916307|emb|CAM06420.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 218

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +       LTERE   L L   G ++ E+A +L LS  T+  ++G    KLD  +R+QA+
Sbjct: 145 RDPGVLDVLTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRDRVQAV 204

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 205 VLAYETGLV 213


>gi|300791059|ref|YP_003771350.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800573|gb|ADJ50948.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + ++    LT+RE   L L   G ++ EIA+ L LS  TV  ++G    KL+  +R+QA+
Sbjct: 145 RDTAELDVLTDREREVLVLIAKGMSNLEIADALFLSEATVKTHVGRILAKLELRDRVQAV 204

Query: 226 AKAIRFGY 233
             A   G 
Sbjct: 205 VLAYETGL 212


>gi|297158565|gb|ADI08277.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 218

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 40/86 (46%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A       +    E    RS     LT RE   LQL G G ++ EIA +L +S HTV  +
Sbjct: 130 ARRLVADFVRRPRETAAPRSDRLAVLTARERETLQLLGRGLSNAEIAAELVVSEHTVKTH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL   +RIQA+  A   G +
Sbjct: 190 VSNVLTKLGLRDRIQAVICAYETGLV 215


>gi|256376358|ref|YP_003100018.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920661|gb|ACU36172.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 302

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
              +  +  ++ + E ++        +         +   A   +T RE   L+L  +G 
Sbjct: 177 PADLLAAIRVVASGEALLSPSVTRRLITEFAARPAARPLPALDAVTAREREVLRLVAEGL 236

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ EI E L +S  T+  ++G    KL A +R Q +  A   G +
Sbjct: 237 SNTEITEALHVSRGTLKTHVGRLLHKLGARDRAQLVIAAYESGLV 281


>gi|167753032|ref|ZP_02425159.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216]
 gi|167659346|gb|EDS03476.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216]
          Length = 216

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             C +V+       +   S    +   L+ RE   L     G +++EIA++L +S  TV+
Sbjct: 126 YFCEEVLRSLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISKRTVD 185

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  +   K    N    +  A+R G +
Sbjct: 186 KHRANILEKTGCKNTASLVVYAVRHGLV 213


>gi|119025623|ref|YP_909468.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765207|dbj|BAF39386.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 249

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 184 PELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 243

Query: 229 IRFGYI 234
                +
Sbjct: 244 YENHLV 249


>gi|254819243|ref|ZP_05224244.1| response regulator receiver domain-containing protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 211

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFK--KRSSAARNLTE 176
               GY++ ++    LA  V   A G           V+ ++  + +      A  +LTE
Sbjct: 91  AGATGYLVKSASKSELAQAVTATAAGRAVFTPGLAGLVLGEYRRIAQSKDDGPARPSLTE 150

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RET  L+    G ++++IA KL LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 151 RETEVLRYVAKGLSAKQIAMKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 207


>gi|170703248|ref|ZP_02894049.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170131845|gb|EDT00372.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 243

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 21/230 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNILIETY 72
             +    L       +A  FA  +           +    EL                  
Sbjct: 12  AADWQRALRACVAAFEA--FASPSAIVFYRLDLNGEPADFELFGMPESMHRTYLA-RYRT 68

Query: 73  GDDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVR----------LEGGLLPFAG 117
            D        +G+  ++     + +E    S+   +   R          L        G
Sbjct: 69  LDPLHPSRCAAGVRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDDAGRTVG 128

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLT 175
               +R G            F     + +          +   L   +   R      LT
Sbjct: 129 AFSLLRFGKGDADGNSTAGRFAPGEVDALARLQPVAEAALAPLLRARRGIHRIGCEERLT 188

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            RE    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 189 YREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 238


>gi|163801312|ref|ZP_02195211.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159174801|gb|EDP59601.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 217

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L+ +V+         +     EL  +       LT RET  L     G ++ +IA+ L +
Sbjct: 128 LSRDVLNRLVAYLANLNHTVTELDTQL---EIELTRRETQVLTALCQGGSNLDIADSLFV 184

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           S HTV ++L S   KL+  NR+QAIA A R 
Sbjct: 185 SEHTVKSHLYSIFRKLEVKNRMQAIAWAKRN 215


>gi|298249917|ref|ZP_06973721.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547921|gb|EFH81788.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 41/83 (49%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+ +     +   +    L++RE   L+L  DG ++ EIA+KL +S  TV  ++ 
Sbjct: 131 RVAARVVEELRGNRRDAPNPFTQLSDRELDVLRLIADGCSNSEIAQKLIISEKTVKGHVS 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL  V+R QA   A + G 
Sbjct: 191 NILGKLHMVDRTQAAVFAWQQGL 213


>gi|260662950|ref|ZP_05863843.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260552571|gb|EEX25571.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 217

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L++RE     L   GYT++EIA KL +S  TV A+  +   KL    R   +  AI   
Sbjct: 154 SLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRADLVRYAIHHH 213

Query: 233 YI 234
            I
Sbjct: 214 LI 215


>gi|269793700|ref|YP_003313155.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095885|gb|ACZ20321.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 226

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 135 TSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           +   ++    V          +            + +   R+LT RET  L+   +G ++
Sbjct: 120 SGSSVVAPRVVRRMLDLFAPHLPGGDDASPARPDEVAPVLRDLTPRETDVLRAVAEGLSN 179

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIAE+L LS  TV  ++G+   KL   +R+QA+  A   G +
Sbjct: 180 AEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAVILAYESGLV 222


>gi|239926633|ref|ZP_04683586.1| two-component system, regulatory protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291434947|ref|ZP_06574337.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291337842|gb|EFE64798.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 257

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 22/215 (10%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            L  +   ++  + +L   +     P R++      +Y  D+          + D     
Sbjct: 34  VLAALSEVMEYDHASLARWD-----PLRRRHTTLAGSYPDDATAYIETR--LHHDPVFPV 86

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK-NGYVIFTSEF 138
             S     +W       ++ +S      +   L    G+A  +     +  G +  ++  
Sbjct: 87  LRSPARGGLWLRDVPGQLLAASPGF-QEVLCPLGIEDGVAQCLFAADGRYVGMLNVSTRR 145

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSS----AARN---------LTERETSCLQLA 185
                +          + +   ++           AA           L+ RE   L   
Sbjct: 146 PRRTPDPARAVLTLLTEALAAAVDTRAGPPPEEVAAADPTADARRPGGLSPRELQVLAEL 205

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
             G T+ EIAE+L ++  TV  ++     KLD  N
Sbjct: 206 TAGRTNREIAERLYITPRTVGTHVEHILAKLDLPN 240


>gi|238909924|ref|ZP_04653761.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 248

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ ++    LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|297566899|ref|YP_003685871.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851348|gb|ADH64363.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 217

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   EV+++A     Q+I DF    +        L+ERE   L+L   GYT+ EIA +
Sbjct: 116 RRVNNGEVLLDAE-LAEQIIQDFKAKRESVPKPHAELSEREVQILKLVAQGYTNLEIAGE 174

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L LS  TV   L     KL   NR QA   A+R G 
Sbjct: 175 LSLSEKTVRNRLSEIFQKLHLNNRTQAALYALREGL 210


>gi|15805916|ref|NP_294615.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458612|gb|AAF10469.1|AE001942_1 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 194

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              Q+          R        LT RE+  L L   G++++EIA  LG+S  TV  +L
Sbjct: 109 LARQLREIVAHPEVDRLPQVDVPRLTPRESEVLPLLARGFSNKEIARDLGVSPDTVKDHL 168

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL+A +R +A+++A   G +
Sbjct: 169 ARLYSKLNAGDRTEAVSRARSIGLL 193


>gi|240171004|ref|ZP_04749663.1| two-component transcriptional regulatory protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 218

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFK--KRSSAARNLTE 176
               GY++ ++    L++ V   A G           V+ ++  +        A  +LTE
Sbjct: 100 AGATGYLVKSASKAELSDAVRATAAGRAVFTPSLAGLVLGEYRRIATSTDSGPARPSLTE 159

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RET  L+    G ++++IAEKL LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 160 RETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216


>gi|159029157|emb|CAO87517.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 93

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 40/66 (60%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            A +L++RE   L L  +G T++EI+EKL +S  TV+ ++ +   K    NR++ +  A+
Sbjct: 8   TAASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWAL 67

Query: 230 RFGYIC 235
            +G +C
Sbjct: 68  HWGKVC 73


>gi|157960462|ref|YP_001500496.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845462|gb|ABV85961.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC
           700345]
          Length = 224

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 18/154 (11%)

Query: 86  PIIWQSIQEETVIE----SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           P++   + +   +         LS           G+ F      ++   ++ T    ML
Sbjct: 64  PLVASQLVKHVPVALYQVEREGLSAEAALLQGIR-GLLF-----NNERMDLLLTGLRKML 117

Query: 142 ANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           + + +        +V+   +        L  + S +   LT RE + +QL   G  ++EI
Sbjct: 118 S-DELWFDRPLMSKVLRQLVNKMGISESLTSEASESLEGLTNREKTIIQLVSSGARNKEI 176

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           A+KL +S HTV A++ S   K  A NR++ +  A
Sbjct: 177 ADKLCISEHTVKAHISSIFRKTQARNRVELLRWA 210


>gi|323498997|ref|ZP_08103979.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|323315933|gb|EGA68962.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 11/138 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156
              L       A +   V         ++              + +++      +     
Sbjct: 68  LNALRADDCDAAIVILTVSDSPADIEAIVKAGADGYLLKDTEPDELVDLLKLSLRGNKAY 127

Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +  +L   +  S     LT+RE   L+    G  +++IA+ L +S  TV  ++ S  
Sbjct: 128 SQEVAKYLADRENSSDVFDELTDREMQILREVAKGDRNKQIADTLFISESTVKVHMKSLL 187

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   +R  A    +  
Sbjct: 188 KKLQVPSRTAATVLYLER 205


>gi|300784675|ref|YP_003764966.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794189|gb|ADJ44564.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS------AARNLTERET 179
              +G+++  +    +A+ V   A G           L   R++      AA+ LT RE 
Sbjct: 97  AGASGFLLKRARKEEIAHAVRTVAAGESLLFPEAIRRLVIGRAAGGKHTRAAKTLTRREA 156

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G ++++IA  L +S+ TV  ++G    KL A NR QA+  A   G +
Sbjct: 157 EVLRLIATGLSNQDIAAALVVSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGVV 211


>gi|282861209|ref|ZP_06270274.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563867|gb|EFB69404.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERETSC 181
               GY++  +    L   V   A G               +    +     L+ RE   
Sbjct: 105 AGATGYLLKDAPREELFTAVRAAADGRTVLSPAVASRLITRVRTPAAPGGEALSTREREV 164

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G ++ EIA  L +S  TV  +L     KL A +R  A+A     G +
Sbjct: 165 LALVAKGTSNREIAAVLFISEATVKTHLTHVFAKLGAKDRAAAVALGYERGIL 217


>gi|284032594|ref|YP_003382525.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811887|gb|ADB33726.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 212

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 + +  A G    ++ ++  L          LTERET  L+L   G T+++IA++
Sbjct: 115 RRTAEGDAVFSA-GLAGLLLGEYRRL--GAGPEVPQLTERETEVLRLVARGLTAKQIAQR 171

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L LS  TV  ++ +   KL   NR + +  AI  G 
Sbjct: 172 LVLSHRTVENHVQNTLRKLQLHNRAELVRYAIENGI 207


>gi|85708110|ref|ZP_01039176.1| two-component response regulator [Erythrobacter sp. NAP1]
 gi|85689644|gb|EAQ29647.1| two-component response regulator [Erythrobacter sp. NAP1]
          Length = 217

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 63/221 (28%), Gaps = 23/221 (10%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       ++  +      +  + S  +               +D      I      
Sbjct: 9   VDDHQLAREGLRAVLAGDGMEVVGLASTGEEAVELAGSLVPDVILMDVRLGDGIDGLEAT 68

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +       LPI    +    +     +       G +                    
Sbjct: 69  RQVVALG----LPIKVVMLTLHEMPGYVREALAAGAAGYVLKD----------------T 108

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYT 190
              +     N+V+         +++  +    +          LT RE   ++L  +G T
Sbjct: 109 EIGDLRAAINQVMAGQSALPLDLVSAAMRAENRPEPKGDLSQILTSREQEVVELVAEGLT 168

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++EIA KL +S  TV  ++     KL   +R QA   A++ 
Sbjct: 169 NKEIARKLDISPATVKVHVERLIGKLGVADRTQAAVMAVKL 209


>gi|269962780|ref|ZP_06177121.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832470|gb|EEZ86588.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 222

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231
           LT+RE   +     G ++++IAE+L +S +TV  +L +   K+D  NR+QA+  A     
Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKENIS 216

Query: 232 GY 233
           G 
Sbjct: 217 GL 218


>gi|325291913|ref|YP_004277777.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059766|gb|ADY63457.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 251

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL--IETYGD 74
           +S  L L+     A ++ L   +                ++  D                
Sbjct: 48  VSGALDLLVTYAGASHYLLAREDL---LEETGLKFIITSDWPFDLVRRLGAELANSQNRS 104

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             +    S L P      +   + +          G    ++ ++F V  G  +   ++ 
Sbjct: 105 SEMEKCLSLLQP------RLLVLPDDVSVPF----GIDRQYSALSFCV--GRIRLSLLLL 152

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             E  + + + + E        ++  +    K       LTERE  CL    +G TS+EI
Sbjct: 153 FPEHSVPSPDRLREIALLTGYCVSFGIASEAKAVRDID-LTERELECLFWIAEGKTSDEI 211

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 212 AMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 251


>gi|322388622|ref|ZP_08062222.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321140542|gb|EFX36047.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 199

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    LTE+E + L     G +++EIA+KL LS  TV  Y+ +   KL A NR
Sbjct: 127 ELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLGASNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A   A   G++
Sbjct: 187 TEAAKTAEEEGWL 199


>gi|224283310|ref|ZP_03646632.1| two component transcriptional regulator, LuxR family protein
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 240

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LTERE   L     G +++EIA+KL +S+ T   ++     K++A +R+QA+  A
Sbjct: 175 PELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFA 234

Query: 229 IRFGYI 234
              G +
Sbjct: 235 YDNGLV 240


>gi|91223298|ref|ZP_01258564.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192111|gb|EAS78374.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 222

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT+RE   +     G ++++IAE+L +S +TV  +L +   K+D  NR+QA+  A   
Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|324998048|ref|ZP_08119160.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 198

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 5/159 (3%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
            +       +    +  +  + +  + + RL         I F            I    
Sbjct: 42  RYARQS---VDVVLVGTQRAVPTGVEATRRLVAAHPQANVIVFGAPDDAGSIAAAIAGGA 98

Query: 138 FLMLANEV-IIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIA 195
              L  +    E   A    +        +  +     LTERE   L+    G ++ +I 
Sbjct: 99  RGYLRWDASRPELVAALAHTLASTSVPTPRVPTDPGVQLTERELQVLRGMSQGKSNGQIG 158

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L LS  TV  +      KL   +R QA+A   R G +
Sbjct: 159 RELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|322437503|ref|YP_004219593.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165396|gb|ADW71099.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 207

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196
             + E ++ A  + ++ +     +   R +    A +LT RE+  L     G +++EIA+
Sbjct: 107 DASGEELLNAIQSVHRGLRYLPHVALDRLAERTPAVDLTPRESEVLVCITQGRSNQEIAD 166

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +LG++  TV  ++ S   K+ A +R QA   A++ G +
Sbjct: 167 ELGIAEKTVRIHVSSLLDKMGARDRTQATIYALQRGLV 204


>gi|298243906|ref|ZP_06967713.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297556960|gb|EFH90824.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 266

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            ++ +F  L    SS      LTE+E   ++    G +++EIAE+L  S  TV  YL   
Sbjct: 171 AIVGEFRRLADTTSSNQGTDLLTEKELEIIRYVAAGLSNKEIAERLSYSEKTVKNYLSII 230

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R Q    A+R G +
Sbjct: 231 FQKLHLRDRTQVAIFALRQGLL 252


>gi|255263647|ref|ZP_05342989.1| positive regulator AgmR [Thalassiobium sp. R2A62]
 gi|255105982|gb|EET48656.1| positive regulator AgmR [Thalassiobium sp. R2A62]
          Length = 204

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A+NLT+RE   L+    G +++EIA  L +   TV  ++ +   KL+A NR QA   A  
Sbjct: 141 AKNLTQRELQVLEGLTQGKSNKEIARDLEIQEPTVKLHMKTLYRKLEASNRTQAALIARE 200

Query: 231 FGY 233
            G 
Sbjct: 201 AGL 203


>gi|297156827|gb|ADI06539.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 222

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
              R LT+RE   ++L   G T++EIA +L LS  T   ++     KLD  +R Q +  A
Sbjct: 150 PRLRALTDREREVMRLVAAGLTNDEIAARLVLSPATAKTHVSRIMTKLDVRDRSQLVVLA 209

Query: 229 IRFGYI 234
              G +
Sbjct: 210 YESGMV 215


>gi|260577153|ref|ZP_05845130.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
 gi|259020627|gb|EEW23946.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
          Length = 203

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 14/179 (7%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
            YD    D          D  +    S    I W                          
Sbjct: 39  TYDQAWVDHYTENGFVLRDPMIAWGFSTTGSIRWSDEGLLDPF-----HLFDEARKFGLC 93

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
            G+        +      F  +   + ++ I       +++           +     LT
Sbjct: 94  YGVTV-ACGPINSRTIGSFARKDREVRDDEIAALSLIVHRLHDM--------TQPPEELT 144

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   L+    G      AEKLG+S   + A + SA ++L A    +AI +A  +  I
Sbjct: 145 KAQIEALRCIAGGDRHAAAAEKLGISESALKARISSARIRLMARTTAEAIQRAKDYRLI 203


>gi|313901723|ref|ZP_07835152.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468011|gb|EFR63496.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 222

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            AR L++RE   L     G T+ ++A +L +S  TV  +L     KL   +R QA+  A+
Sbjct: 151 RARLLSQRELEVLSRIARGKTTAQVARELFISPKTVRNHLSHIMQKLGVRDRTQAVLFAL 210

Query: 230 RFGYI 234
           R G I
Sbjct: 211 RVGLI 215


>gi|298247654|ref|ZP_06971459.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550313|gb|EFH84179.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 907

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +  ++              L+ERE   LQ    G +++ IA+ L +S++TV  ++     
Sbjct: 820 RAFSEAASRTSHTQPLLDPLSERELEVLQCIMRGQSNQTIADHLQVSLNTVKTHMSHIFA 879

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +R QA+A+A     I
Sbjct: 880 KLHVNSRTQAVARANELQLI 899


>gi|222081230|ref|YP_002540593.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725909|gb|ACM28998.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 897

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 2/115 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
           +             +   +     + +               +L    ++A   LT+RE 
Sbjct: 782 IEGPEFGRRLCQLAASRGVPDVVMQRLERLQDVVAGASAQDSDLLSVPTAATGGLTDRER 841

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S L+L   G +++EI  KL LS +TV  +L +   KL+   R  A+  A   G +
Sbjct: 842 SVLRLLSAGLSNKEIGRKLDLSNNTVKFHLRNIYAKLNVTTRTAAVTMARDTGIL 896


>gi|119468997|ref|ZP_01612022.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonadales bacterium TW-7]
 gi|119447649|gb|EAW28916.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonadales bacterium TW-7]
          Length = 217

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++ ++   +LT ++   LQ   +G  +++IA +L +S  TV A++ +   KL   NR Q
Sbjct: 141 DREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQ 200

Query: 224 AIAKAIRFGY 233
           A+  A +   
Sbjct: 201 AVLIAAKLQL 210


>gi|186685344|ref|YP_001868540.1| LuxR family GAF modulated transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186467796|gb|ACC83597.1| GAF modulated transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 221

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 11/160 (6%)

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             +    +      P+    + E      + +L           AG   P+    H  G 
Sbjct: 63  QHNPVARYLLEHHAPVHEGLVVE----PKTWRLICPRADHWHVMAG---PIVSNGHLVGV 115

Query: 132 VIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGD 187
           V FT +  M   +   +I+    C  + T    +  +         LT RE    QL   
Sbjct: 116 VGFTRQQGMPTFDSQNLIDLSALCLHISTWVARVKSQHPLLLQTERLTPREMQIAQLVAQ 175

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G T+ EI+ +L ++ ++V   L     KL+  +R Q +AK
Sbjct: 176 GQTNAEISAELWITENSVKQALKRMFRKLEVSSRTQMVAK 215


>gi|205357190|ref|ZP_02345732.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323376|gb|EDZ11215.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 248

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ ++    LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|57234510|ref|YP_181438.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57234583|ref|YP_181405.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224958|gb|AAW40015.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
 gi|57225031|gb|AAW40088.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 224

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA   LT+RE   L++A  G ++++IA++L LS  T+  +L +   KL   +R +AI   
Sbjct: 153 SAVNPLTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYG 212

Query: 229 IRFGY 233
           ++ G+
Sbjct: 213 LKRGW 217


>gi|332199316|gb|EGJ13394.1| response regulator [Streptococcus pneumoniae GA41317]
          Length = 199

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|328885551|emb|CCA58790.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 249

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERET  L L  DG +++EIA +L +S  TV  ++ +   K    +R QA+  A + 
Sbjct: 179 DGLTERETEVLVLVADGLSNQEIAGRLRISTATVKTHINNLFAKTGVRDRAQAVRYAYQH 238

Query: 232 GYI 234
           G +
Sbjct: 239 GLV 241


>gi|320158186|ref|YP_004190564.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
 gi|319933498|gb|ADV88361.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
          Length = 214

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   LQ    G ++ EIA+ L +S HT+ ++L +   K+D  NR QA A A R 
Sbjct: 155 ELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKRN 213


>gi|261405324|ref|YP_003241565.1| LuxR family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|315645684|ref|ZP_07898808.1| transcriptional regulator, LuxR family protein [Paenibacillus
           vortex V453]
 gi|261281787|gb|ACX63758.1| transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10]
 gi|315279162|gb|EFU42472.1| transcriptional regulator, LuxR family protein [Paenibacillus
           vortex V453]
          Length = 74

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L     T+ +IA +L +S  TV  ++ +   KL+   R QA+ + I+ G
Sbjct: 12  LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLG 70


>gi|256394854|ref|YP_003116418.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361080|gb|ACU74577.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 232

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +  ++I           T       +R      LT+RE   L     G ++ EIAE L
Sbjct: 127 PRITRQLIEAFARQTDPAATAAGPRADERLERLERLTDREREVLVEIARGQSNAEIAETL 186

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  TV  ++     KL+  +R+QA+  A   G +
Sbjct: 187 HLSEATVKTHVSRILPKLELRDRVQAVVFAYEIGLV 222


>gi|301059373|ref|ZP_07200300.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
 gi|300446602|gb|EFK10440.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
          Length = 220

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             + L    + +  +  L++RE     L   G +++ IA  L +S  TV  +      KL
Sbjct: 141 HMETLTQSCRETEISEILSQREMEVFLLLAKGESTKAIARALFISPKTVETHRYHIMQKL 200

Query: 217 DAVNRIQAIAKAIRFGYI 234
           +A + +     AIR G I
Sbjct: 201 EADSVVALTRLAIRNGLI 218


>gi|227505685|ref|ZP_03935734.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197653|gb|EEI77701.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 212

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 140 MLANEVIIEAHGACY--QVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              +E++   H A      ++  +   L  +  +   +LT RE   L+L   G ++ EI 
Sbjct: 114 APPHELLAAVHSAADGDSALSPIVADRLMTRVRTPRTSLTPRELEVLKLVAAGASNREIG 173

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 174 QDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212


>gi|72383356|ref|YP_292711.1| LuxR transcriptional regulator [Prochlorococcus marinus str.
           NATL2A]
 gi|72003206|gb|AAZ59008.1| regulatory protein, LuxR [Prochlorococcus marinus str. NATL2A]
          Length = 91

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +S+   L+ RE   + L  DG T++EIAEKL +S  TV+ ++ +   K  + NR+  
Sbjct: 5   EIANSSHMGLSAREMEIIGLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVAL 64

Query: 225 IAKAIRFGYIC 235
           +  A+  G IC
Sbjct: 65  LNWAMDHGKIC 75


>gi|269959807|ref|ZP_06174185.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3]
 gi|269835420|gb|EEZ89501.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3]
          Length = 204

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156
           L         +   V         ++ +            + ++E     +       Q 
Sbjct: 65  LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHEGDKAYSQA 124

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L   + +      LT+RET  LQ    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 125 VAKYLNEREGQEDVFDTLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 184

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 185 KVPSRTAATVLYLER 199


>gi|239978741|ref|ZP_04701265.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291450632|ref|ZP_06590022.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353581|gb|EFE80483.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 222

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 3/115 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAAR--NLTERE 178
           +R G     Y     E L  A   +   H     +V    L   +      R  +LTERE
Sbjct: 106 LRAGAGGYVYKDVDPEALARAIRSVHAGHVLLQPEVAGALLSQDEHGQGQGRGGSLTERE 165

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 166 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 220


>gi|59801167|ref|YP_207879.1| NarL/NarP [Neisseria gonorrhoeae FA 1090]
 gi|194098688|ref|YP_002001750.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945]
 gi|239998996|ref|ZP_04718920.1| NarL/NarP [Neisseria gonorrhoeae 35/02]
 gi|240112982|ref|ZP_04727472.1| NarL/NarP [Neisseria gonorrhoeae MS11]
 gi|240125768|ref|ZP_04738654.1| NarL/NarP [Neisseria gonorrhoeae SK-92-679]
 gi|240128290|ref|ZP_04740951.1| NarL/NarP [Neisseria gonorrhoeae SK-93-1035]
 gi|254493787|ref|ZP_05106958.1| two-component system response regulator [Neisseria gonorrhoeae
           1291]
 gi|260440452|ref|ZP_05794268.1| NarL/NarP [Neisseria gonorrhoeae DGI2]
 gi|268594844|ref|ZP_06129011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599062|ref|ZP_06133229.1| two-component system response regulator [Neisseria gonorrhoeae
           MS11]
 gi|268684366|ref|ZP_06151228.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686687|ref|ZP_06153549.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043751|ref|ZP_06569467.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399036|ref|ZP_06643201.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria gonorrhoeae F62]
 gi|59718062|gb|AAW89467.1| putative nitrite/nitrate two-component system transcriptional
           response regulator [Neisseria gonorrhoeae FA 1090]
 gi|193933978|gb|ACF29802.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945]
 gi|226512827|gb|EEH62172.1| two-component system response regulator [Neisseria gonorrhoeae
           1291]
 gi|268548233|gb|EEZ43651.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583193|gb|EEZ47869.1| two-component system response regulator [Neisseria gonorrhoeae
           MS11]
 gi|268624650|gb|EEZ57050.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626971|gb|EEZ59371.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012214|gb|EFE04203.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610450|gb|EFF39560.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria gonorrhoeae F62]
 gi|317164288|gb|ADV07829.1| NarL/NarP [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 218

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +R+ A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA 
Sbjct: 145 QRTQALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAA 204

Query: 226 AKAIRF 231
             AIR 
Sbjct: 205 VYAIRH 210


>gi|89094462|ref|ZP_01167402.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89081354|gb|EAR60586.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 221

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 41/76 (53%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + +  E  +K ++A   LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 137 LGEVSEDDQKFAAALAALTPQQFRVLTMLTEGLLNKQIAYELNVSEATIKAHVTAILRKL 196

Query: 217 DAVNRIQAIAKAIRFG 232
              +R QA+  A R G
Sbjct: 197 GVHSRTQAVIAAQRLG 212


>gi|306841639|ref|ZP_07474330.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306288280|gb|EFM59656.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
          Length = 234

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAA 171
           A    L     GYV+   + L +   +                ++I +      K  +  
Sbjct: 111 AILASLRAGATGYVLKERDDLEVMLALRSVLRGGAPIDPFVARRIIEELPLQSAKEKADN 170

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L+L  +G  + +IAE+L LS HT+ A++ +   KL   +R QA   A + 
Sbjct: 171 AGLSPRENEILRLVSEGLGNRDIAEQLFLSRHTIEAHIKNIYRKLAVSSRTQAAQAARQR 230

Query: 232 GYI 234
           G +
Sbjct: 231 GLL 233


>gi|302540643|ref|ZP_07292985.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458261|gb|EFL21354.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 227

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGD 187
            + +    + A + ++        +             A       LTERE   + LA  
Sbjct: 113 FLLSGIRTVAAGDSLLSPTATRTLITRFLATPDTDTPLAPPERLAALTEREREVMALAAH 172

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ EIA++L +S  TV +++  A  KLD  +R Q +  A + G +
Sbjct: 173 GKSNAEIADQLVVSPLTVRSHIQRAMTKLDVRDRAQLVVIAYQSGLV 219


>gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 212

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT  ET  +Q    G ++ EIAE LG+S  TV +++ +   K    NR +    AI  G
Sbjct: 147 ELTPTETKVIQYVARGLSNREIAEVLGVSQRTVESHVSNMLGKTGLHNRTELARWAIESG 206

Query: 233 Y 233
            
Sbjct: 207 L 207


>gi|91776279|ref|YP_546035.1| LuxR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710266|gb|ABE50194.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus
           KT]
          Length = 257

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 123 RLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------- 173
             G H   YV+ +S   F   +  ++          +     L +++ +  +        
Sbjct: 137 HRGRHDCLYVLLSSNLSFPPASRPMLEALLPYIDSALRQIEHLPEQQPTLIKAEPEPKDE 196

Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               L+ RE   +     G T++EI   L +S  TV  +L     KL+ +NR QA+AK
Sbjct: 197 SLNILSGRELEIMDWVTKGKTNQEIGMILDISAFTVKNHLQRIFKKLNVMNRAQAVAK 254


>gi|311899082|dbj|BAJ31490.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 215

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERE 178
           +R G     Y     E L  A   +   H      +   L      +        LTERE
Sbjct: 100 LRAGAAGYVYKDVDPEALAGAIRSVHAGHVLLQPELAAALLAEDVPAPPQGRGGNLTERE 159

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              L    DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R 
Sbjct: 160 REVLSHIADGRSNREIARTLHLSEKTVKTHVSNILMKLDVADRTQAALWAVRN 212


>gi|257792552|ref|YP_003183158.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|325832688|ref|ZP_08165451.1| prevent-host-death family protein [Eggerthella sp. HGA1]
 gi|257476449|gb|ACV56769.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|325485827|gb|EGC88288.1| prevent-host-death family protein [Eggerthella sp. HGA1]
          Length = 228

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                ++   +               L      ++  R LT+RE   L L   G+T++EI
Sbjct: 124 AQGDALIEPSITRRLIETFVAARPASLGGAAAVAAGLRTLTDREREILALVARGFTNDEI 183

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L +S  TV  +L     KLDA +R Q + +A   G +
Sbjct: 184 GSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGGLV 223


>gi|254464109|ref|ZP_05077520.1| two component response regulator [Rhodobacterales bacterium Y4I]
 gi|206685017|gb|EDZ45499.1| two component response regulator [Rhodobacterales bacterium Y4I]
          Length = 214

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  K + A   LT RE + L     G +++E+A+ L +SV TV  +  +   KL   + 
Sbjct: 135 SLKPKDNGAREALTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISST 194

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 195 AGLTRYALEHGVL 207


>gi|111023025|ref|YP_705997.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822555|gb|ABG97839.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 228

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +++    LTERE   LQL   G ++ +I E+L +S  TV  ++ +   KLD   R +A+
Sbjct: 160 GQTTPRDGLTERELEVLQLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAV 219

Query: 226 AKAIRFGYI 234
            +A + G I
Sbjct: 220 YEAGKLGLI 228


>gi|330721944|gb|EGG99887.1| Nitrate/nitrite response regulator protein [gamma proteobacterium
           IMCC2047]
          Length = 217

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 16/141 (11%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------- 154
            L    +    + F V          +              E ++E              
Sbjct: 73  ELRARGITAVVVIFTVSNHEKDILAAMKAGADGYLLKDCEPEDLMEKLRLAATGKSVLDD 132

Query: 155 ---QVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              Q++T  L   K    +++NL T RE   L L     +++ IA +LG++  TV  ++ 
Sbjct: 133 ELVQIVTHALRENKPTPPSSKNLLTARERDILDLLAACKSNKVIANELGITDGTVKVHVK 192

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           +   KL+  +RI+A   A+  
Sbjct: 193 NLLRKLNLKSRIEAAVWALEN 213


>gi|269796274|ref|YP_003315729.1| two component transcriptional regulator, LuxR family [Sanguibacter
           keddieii DSM 10542]
 gi|269098459|gb|ACZ22895.1| two component transcriptional regulator, LuxR family [Sanguibacter
           keddieii DSM 10542]
          Length = 234

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   +   A G      +    L  +  S A  LT RE   L+  
Sbjct: 123 AGATGYLLKDTPRAELVAGIREAARGQTVLTPSVATRLVSQVGSRADRLTPREVEVLRAV 182

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++  +  +L +S  TV  +L  A  KL   +R  A+  A   G +
Sbjct: 183 ARGLSNAAVGHELFISETTVKTHLIRAFGKLGVNDRTHAVTVATDRGLL 231


>gi|254425219|ref|ZP_05038937.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196192708|gb|EDX87672.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 220

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L    DG +++ IA+ L +S +TV  ++ +   KLD  +R +A++  I+ 
Sbjct: 156 DPLTTREVQVLNQLADGLSNKAIAQVLTISENTVKFHISAILAKLDVSSRTEAVSVGIKA 215

Query: 232 GYI 234
           G +
Sbjct: 216 GLV 218


>gi|120554504|ref|YP_958855.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
 gi|120324353|gb|ABM18668.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
          Length = 916

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 41/82 (50%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            Y  I       +  ++ A  L++RE   L L   G  ++EIAE++ ++  TV A++ + 
Sbjct: 829 AYHPIDTARPGGEPVNALAEPLSQREQEVLALIHQGLANKEIAERMSVAPATVKAHIRNL 888

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL    R +A+AKA   G +
Sbjct: 889 YGKLGVSRRTEALAKAREVGLL 910


>gi|254476925|ref|ZP_05090311.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
 gi|214031168|gb|EEB72003.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
          Length = 203

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 42/110 (38%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L     G+V  T     + N V   A G  Y  I     +          L+ RE   L+
Sbjct: 93  LDAGAAGFVPKTLPAKSMINAVRFMAMGEQYAPIDFMTAVEDTPCPLTSTLSPREIEMLR 152

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              +G  ++EIA  L ++  TV  ++ S   K+   NR QA   A   G 
Sbjct: 153 GLSEGKANKEIARDLNIAEPTVKLHMKSLYRKMKVSNRTQAALVARDKGL 202


>gi|196229817|ref|ZP_03128681.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226143|gb|EDY20649.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 210

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              L ++     R L+ERE   LQ    G +++EIA  L ++  TV  ++G+   KL   
Sbjct: 135 AARLAERTH--HRELSEREIEVLQRIVKGLSNKEIAGHLFITEATVKLHVGNILTKLGVQ 192

Query: 220 NRIQAIAKAIRFGYI 234
           +R QA   AI+ G +
Sbjct: 193 DRTQASTVAIQRGIV 207


>gi|121606516|ref|YP_983845.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595485|gb|ABM38924.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 292

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE   L+L   G++S EI  +L +S  T N ++ +   KL+  NR QA++ A   G
Sbjct: 231 KLSEREQQVLKLVASGHSSTEIGARLVISWQTANTHIKNIYRKLNVRNRAQAVSFAANHG 290

Query: 233 Y 233
            
Sbjct: 291 L 291


>gi|309790624|ref|ZP_07685178.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308227352|gb|EFO81026.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 226

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 43/94 (45%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              +  +++        Q     +      S  A  LTERE S LQ+   G +++EI+  
Sbjct: 130 NPEITAQILPYLGRLAEQTAPAPVTTAPPHSERAELLTERERSILQMLAKGCSNQEISAA 189

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L +SV TV  ++ S   KLD  +R QA   AI+ 
Sbjct: 190 LMISVGTVKNHISSILGKLDVRDRTQAALWAIQN 223


>gi|330947744|gb|EGH48203.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 120

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAA---RNLT 175
           P   G     +     E     +E ++          ++             A     L+
Sbjct: 1   PAASGGALIPFKALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDCLS 60

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   LQL   G +++EI+E+L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 61  VRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGLL 119


>gi|307128200|ref|YP_003880231.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|306485262|gb|ADM92131.1| response regulator [Streptococcus pneumoniae 670-6B]
          Length = 199

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|255523270|ref|ZP_05390241.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|296186229|ref|ZP_06854634.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|255513138|gb|EET89407.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|296049497|gb|EFG88926.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 882

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  +++RE   L L   G  + EIA+ L ++  T  +++ +   KL   NRIQA+AKA  
Sbjct: 819 SEIISKREKEVLMLIESGAKNSEIAKALFITESTTKSHILNIFSKLGVRNRIQAVAKAKE 878

Query: 231 FGYI 234
            G I
Sbjct: 879 IGII 882


>gi|166368199|ref|YP_001660472.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
 gi|166090572|dbj|BAG05280.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
          Length = 93

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 40/66 (60%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            A +L++RE   L L  +G T++EI+EKL +S  TV+ ++ +   K    NR++ +  A+
Sbjct: 8   TAASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWAL 67

Query: 230 RFGYIC 235
            +G +C
Sbjct: 68  HWGKVC 73


>gi|186681582|ref|YP_001864778.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464034|gb|ACC79835.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 226

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L     G ++EEIA+ L ++V TV A+L S   KL   +R QAI  A++ G 
Sbjct: 164 LTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIFEKLKVTSRTQAIVAALKLGL 223

Query: 234 I 234
           +
Sbjct: 224 V 224


>gi|323497110|ref|ZP_08102130.1| two component LuxR family transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
 gi|323317685|gb|EGA70676.1| two component LuxR family transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
          Length = 209

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             C Q     LE + ++       L++RE+  L+   +G  ++EIA+ L +SV TV  + 
Sbjct: 124 YLCPQASDRLLEQINEEPEQKDDTLSKRESDVLKAIANGACNKEIADSLHISVRTVETHR 183

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL A +    +  A++ G +
Sbjct: 184 LRIKKKLGATSTAALVKLALQKGLV 208


>gi|317490641|ref|ZP_07949111.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325831510|ref|ZP_08164764.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1]
 gi|316910265|gb|EFV31904.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325486764|gb|EGC89212.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1]
          Length = 214

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAAR 172
           + + +R G         TSE L+ A   + E     +  +T  L        ++   + +
Sbjct: 91  LFYTLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGGEEEDRSYQ 150

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   LQL   G+T++EI+E++ LSV TV A+      KL    R   +  A+R  
Sbjct: 151 QLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHK 210

Query: 233 YI 234
            +
Sbjct: 211 LL 212


>gi|312883206|ref|ZP_07742935.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309369129|gb|EFP96652.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 217

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  + + A  +LT RE   L+    G ++ +IAE + +S  TV ++L     KL   NR+
Sbjct: 144 VETQTAPATVDLTAREIQILRCLMIGASNTQIAEDMFISEFTVKSHLQKIFKKLSVRNRV 203

Query: 223 QAIAKAIRF 231
           QA A A + 
Sbjct: 204 QAAAWAKQH 212


>gi|307330717|ref|ZP_07609854.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883609|gb|EFN14658.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 214

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 138 FLMLANEVIIEAH----GACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSE 192
                   I   H        +V    L   +        +LTERE   L L  DG ++ 
Sbjct: 112 DPEALARAIRSVHSGHVLLQPEVALALLSQDEGGGQGRGGSLTEREREVLALIADGRSNR 171

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G 
Sbjct: 172 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 212


>gi|184155547|ref|YP_001843887.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183226891|dbj|BAG27407.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 217

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L++RE     L   GYT++EIA KL +S  TV A+  +   KL    R   +  AI   
Sbjct: 154 SLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRADLVRYAIHHH 213

Query: 233 YI 234
            I
Sbjct: 214 LI 215


>gi|124024371|ref|YP_001018678.1| LuxR transcriptional regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964657|gb|ABM79413.1| Bacterial regulatory protein, LuxR family protein [Prochlorococcus
           marinus str. MIT 9303]
          Length = 92

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   + L  DG T++EIAEKL +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 13  SLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 72

Query: 233 YIC 235
            IC
Sbjct: 73  KIC 75


>gi|33864279|ref|NP_895839.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9313]
 gi|33641059|emb|CAE22188.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9313]
          Length = 92

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   + L  DG T++EIAEKL +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 13  SLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 72

Query: 233 YIC 235
            IC
Sbjct: 73  KIC 75


>gi|17232470|ref|NP_489018.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17134116|dbj|BAB76677.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 224

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 69/224 (30%), Gaps = 29/224 (12%)

Query: 11  SSSLQELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
             + QEL P L   I      +++ +Y I+S        Q I           +   +  
Sbjct: 15  IRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSI------PAVCLESNPVGR 68

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                    H    L P  W+                           +  P+       
Sbjct: 69  YVVERHAPAHEQLILTPEDWKD--------------FCPRHDHG--HVMTGPIICDGRLI 112

Query: 130 GYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183
           G + F  +    A     + +    C  +      L       +SS+   LT RE    +
Sbjct: 113 GTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSPSPLTPRELQIAE 172

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L   G T+ EIAEKL ++ ++V   L     KL    R + +A+
Sbjct: 173 LVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVAR 216


>gi|264677722|ref|YP_003277628.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|299530281|ref|ZP_07043706.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|262208234|gb|ACY32332.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|298721652|gb|EFI62584.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 253

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLTERETSCLQL 184
            +   +     +V+         +    L+ + KR +         +  L+ RE   L++
Sbjct: 144 SWFGNYPQAVLQVVNGGASITPSLARRLLQRYDKRPATGAVPGSGMSDRLSSRECEVLRM 203

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              G TS EI  +L +S  TVN ++ +   KL    R QA+  A   G+
Sbjct: 204 VASGNTSAEIGVQLEISTMTVNTHIKNIYRKLQVRTRAQAVRFAYLRGW 252


>gi|239979006|ref|ZP_04701530.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291450884|ref|ZP_06590274.1| two-component system regulator [Streptomyces albus J1074]
 gi|291353833|gb|EFE80735.1| two-component system regulator [Streptomyces albus J1074]
          Length = 237

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 151 GACYQVITDFLELFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           G    V+ ++  L    +       A  LT RET  L+L   G + ++IAE+L +S  TV
Sbjct: 136 GLAGLVLGEYRRLAAGPAPTRGKPDAPRLTARETEVLRLVAKGLSYKQIAERLVISHRTV 195

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++ +   KL   NR++ +  AI  G 
Sbjct: 196 QNHVQNTLGKLQLHNRVELVRYAIEAGL 223


>gi|239929935|ref|ZP_04686888.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438269|ref|ZP_06577659.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341164|gb|EFE68120.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 220

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARN---LTERETSCLQ 183
                       ++A    + A G   ++I +F  L  + R+        LTERET  L 
Sbjct: 105 DASADQLAEAVRVVAAGDAMLAPGITRRLIAEFSRLAPEPRTPLKERVGDLTERETEVLA 164

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA +L ++  TV  ++G   VKL   +R QA   A   G +
Sbjct: 165 LIARGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 215


>gi|157151124|ref|YP_001451003.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075918|gb|ABV10601.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 199

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 43/73 (58%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A DG +++EIAEKL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAADGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|106879460|emb|CAJ20013.1| putative DNA binding regulatory protein [Streptomyces cattleya]
          Length = 225

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +     LT RE   L+L   G ++ EIA  L L   TV +++     KL   NR
Sbjct: 145 AARPGAAPGVPGLTGRELEVLRLMAAGMSNAEIAGHLSLGEATVKSHVSRLLGKLGLRNR 204

Query: 222 IQAIAKAIRFGYI 234
            QAIA A R G +
Sbjct: 205 SQAIACAYRTGLV 217


>gi|152978046|ref|YP_001343675.1| two component LuxR family transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150839769|gb|ABR73740.1| two component transcriptional regulator, LuxR family
           [Actinobacillus succinogenes 130Z]
          Length = 209

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT--------- 158
           L    +    +   V    +    +I       L  +   +      + I          
Sbjct: 72  LRNEGVDARIVILTVSDAKNDIFALIDAGADGYLLKDTEPDVLLVQLKRIAGGEVVLSDS 131

Query: 159 --DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             D L           +LT+RE   LQ    G ++++IA KL +S  TV  ++ +   KL
Sbjct: 132 IKDLLLERHASKDPIYSLTDREMDVLQQIATGLSNKQIAGKLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A    +  
Sbjct: 192 NVHSRVAATVLYLEH 206


>gi|311068596|ref|YP_003973519.1| two-component response regulator DesK [Bacillus atrophaeus 1942]
 gi|310869113|gb|ADP32588.1| two-component response regulator (DesK) [Bacillus atrophaeus 1942]
          Length = 199

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S A  LTERE   L+L  DG  ++EIA +L +   TV  Y+     KL+  NR
Sbjct: 126 ELMEDIYSEANPLTEREKEVLELVADGKNTKEIANELSIKSGTVRNYISMILDKLEVKNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITRSKEKGW 197


>gi|269128421|ref|YP_003301791.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313379|gb|ACY99753.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 210

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEF------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           VR G         +          +   + +     A + +                 LT
Sbjct: 92  VRGGARGYVTKTISGPELTDAIGRVAEGDAVFSPRLAGFVLDAFAATAAPPIDPELDQLT 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV  ++ S   KL   NR +    A     +
Sbjct: 152 QREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNRHELSRWAAARRLV 210


>gi|271964734|ref|YP_003338930.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507909|gb|ACZ86187.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--------FKKRSSAARNLT 175
           L    +G+++  +    LA  V + A G      +    L         ++      ++T
Sbjct: 96  LRAGASGFLLKDASAQQLAEAVRVVAAGEALLAPSVTRRLISEFARVGPRRPRGRLDDIT 155

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ERET  L L   G +++EIAE+L LS  TV  ++G    KL+  +R QAI  A   G +
Sbjct: 156 ERETEVLALIAQGRSNQEIAEELVLSEQTVKTHVGRILAKLNLRDRAQAIVHAYETGLV 214


>gi|224368539|ref|YP_002602702.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691255|gb|ACN14538.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 217

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 32/68 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             S     L+ RE   L L  +G ++++IA+ L +S  TV  +  S   +LD       I
Sbjct: 146 GSSFPGGTLSPREEEVLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLI 205

Query: 226 AKAIRFGY 233
             AIR GY
Sbjct: 206 KYAIRHGY 213


>gi|206563900|ref|YP_002234663.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198039940|emb|CAR55918.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 287

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 70/245 (28%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  A +      L                
Sbjct: 46  TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFARERVESLYLHEAFT--PATYRGDYV 103

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQ----------SIQEETVIESSGQLSVRLEGGLLPFA 116
                  D          +PI+W              +  V  ++    ++        +
Sbjct: 104 RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDDDSCVSPAALDGFLQTMQDDGMCS 163

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 164 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 222

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 223 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 282

Query: 230 RFGYI 234
           +   I
Sbjct: 283 KLELI 287


>gi|156976607|ref|YP_001447513.1| transcriptional dual regulator NarL [Vibrio harveyi ATCC BAA-1116]
 gi|156528201|gb|ABU73286.1| hypothetical protein VIBHAR_05381 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156
           L         +   V         ++ +            + +++     +       Q 
Sbjct: 65  LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVDLLKQAHEGDKAYSQA 124

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L   + +      LT+RET  LQ    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 125 VAKYLNEREGQEDVFDTLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKL 184

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 185 KVPSRTAATVLYLER 199


>gi|56962819|ref|YP_174545.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909057|dbj|BAD63584.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 210

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 43/99 (43%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +F +    L  E++++   A   +         +       L ERE   ++L G G  + 
Sbjct: 110 LFATIEKALLGELVLDGQVAAKVMPKLLQHSAPQEKEQIPPLAEREKEIIRLVGQGRNNA 169

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           EIA +L LSV TV  Y+    +KL   +R Q    A++ 
Sbjct: 170 EIAAELYLSVGTVKNYISQLFIKLGVRDRTQLAIFAVKH 208


>gi|225352800|ref|ZP_03743823.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156407|gb|EEG69976.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 248

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
               +LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A
Sbjct: 183 PELDDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFA 242

Query: 229 IRFGYI 234
                +
Sbjct: 243 YENHLV 248


>gi|37520382|ref|NP_923759.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211375|dbj|BAC88754.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 212

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGD 187
                 S  L     V   A      +    L    +     A   L+ERE   L+L  D
Sbjct: 105 ATAGIASRLLAAVASVRDGAAWLDPDIADRVLRDLGRIPQAGADNPLSEREMEVLKLIAD 164

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T+ EI  +L ++  TV  ++ +   KL   +R+QA  +A+R G+I
Sbjct: 165 GLTNAEIGRRLYIASGTVRVHVSNIIAKLGVNDRVQAAVRALREGWI 211


>gi|126173479|ref|YP_001049628.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|125996684|gb|ABN60759.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
          Length = 216

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 162 ELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++ + + + +        L+ERE   L     G++++EIA  + L+  TV  ++ +   K
Sbjct: 138 QMSEPKPAPSVGVTRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTK 197

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           LD  +R QA+ K ++   I
Sbjct: 198 LDCRDRTQAVLKGLQLALI 216


>gi|213850302|ref|ZP_03381200.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 217

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 14/134 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQA 224
           +   KL+  +R+ A
Sbjct: 191 NLLRKLNVRSRVAA 204


>gi|307153141|ref|YP_003888525.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306983369|gb|ADN15250.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 220

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + LT+RE   L L   G+T++EIAE+L ++V TV  ++ +   KLD  +R  A   AI+ 
Sbjct: 157 QPLTKRELEILALIATGHTNQEIAERLQITVGTVRVHVHTILQKLDVRDRTSAAVLAIQK 216

Query: 232 GYI 234
           G +
Sbjct: 217 GLV 219


>gi|330447815|ref|ZP_08311463.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492006|dbj|GAA05960.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 214

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     L+ RE   L+    G +S++IA+ L +S  TV  +  +   KLD  +  +   
Sbjct: 146 AAPEVNPLSRREEGILKHVAQGLSSKQIAKALDISYRTVETHRQNIKHKLDLHSTAELAK 205

Query: 227 KAIRFGYI 234
            A+  G +
Sbjct: 206 YALEKGLV 213


>gi|326792257|ref|YP_004310078.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
 gi|326543021|gb|ADZ84880.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
          Length = 519

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT +E   L L  +G ++ EI ++L L++ TV  ++     KL+  NRIQA+++A + G 
Sbjct: 458 LTPKEREILSLVAEGRSNAEIGDQLYLTIGTVKWHMNHILGKLEVKNRIQAVSEARKLGE 517

Query: 234 I 234
           I
Sbjct: 518 I 518


>gi|229490673|ref|ZP_04384511.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229322493|gb|EEN88276.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 227

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETS 180
           V  G          +  L+ A   +     A   +  +  +     +SS+   LT+RE  
Sbjct: 114 VHAGARGYVVKDVDTTELVRAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELE 173

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+L  +G ++ +I E+L +S  TV  ++ +   KL+   R +A+  A + G I
Sbjct: 174 VLRLLANGLSNIKIGERLFISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 227


>gi|288574154|ref|ZP_06392511.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569895|gb|EFC91452.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 214

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            ++                LT RE   L L  +G T+ E+AE+L LS+ TV  +      
Sbjct: 131 HIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTVGTHRQHIMN 190

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   N    +  AIR G I
Sbjct: 191 KLKLKNLADLVKYAIRNGMI 210


>gi|182415000|ref|YP_001820066.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842214|gb|ACB76466.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 40/82 (48%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
               +   +      S+ A  LT+RE   LQL  + ++++EIA KLG+S+ TV+ +  + 
Sbjct: 128 AVAALLRNVVANPSASNTADFLTDREREILQLVAESHSTKEIAAKLGISIKTVDNHRTNL 187

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL+  +       A+  G I
Sbjct: 188 MRKLNLHDVASLTRYALEVGLI 209


>gi|77359651|ref|YP_339226.1| regulator in two-component regulatory system; LuxR
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874562|emb|CAI85783.1| putative regulator in two-component regulatory system ; LuxR family
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 216

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++ ++   +LT ++   LQ   +G  +++IA +L +S  TV A++ +   KL   NR Q
Sbjct: 141 DREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQ 200

Query: 224 AIAKAIRFGY 233
           A+  A +   
Sbjct: 201 AVLIAAKLQL 210


>gi|254883648|ref|ZP_05256358.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294775634|ref|ZP_06741143.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319642280|ref|ZP_07996939.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|254836441|gb|EET16750.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294450576|gb|EFG19067.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317386136|gb|EFV67056.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 216

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               C + +        K+      LT  E   L+L   G T++EIA +  LSV+TV  +
Sbjct: 124 LQYMCTRAVWLLQHKEDKKDKLVSPLTVTEREILKLMALGKTTKEIAAERFLSVYTVMTH 183

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
             +   KL+  N  +A   A+R G +
Sbjct: 184 RKNIFRKLEVNNVHEATKYALRAGIV 209


>gi|258516415|ref|YP_003192637.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780120|gb|ACV64014.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 223

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            NL++RE   L+L    +++ EIA  L +S+ TV  ++ +   KL   NR QAI  +I  
Sbjct: 157 ENLSKREMEILKLMSQNHSNTEIAGMLYISLPTVKTHVSNILRKLGQQNRAQAILYSIAT 216

Query: 232 GYI 234
           G I
Sbjct: 217 GLI 219


>gi|220909919|ref|YP_002485230.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866530|gb|ACL46869.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARN-----LTERETS 180
                       +      I  A      +       + +     + N     L++RE  
Sbjct: 104 SGADAYCIKGASVDRLLSAIAAAQEGATYLDPQIARQVIEHLKPPSNNNMLGQLSQRELD 163

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+L  +GY++ EIA KL LS +T+  ++     KL   +R+QA   A+R G +
Sbjct: 164 VLKLMVEGYSNPEIATKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 217


>gi|163839607|ref|YP_001624012.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953083|gb|ABY22598.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 219

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQL 184
                   S   ++A+   + A     ++I +F +   + ++      NLT+RE   L L
Sbjct: 106 DALADELVSAVRIVASGEALLAPSVTKRLIENFAKSRPRSAANKTRLNNLTDREREVLTL 165

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G G +++EIA  L ++  TV  ++     KLD  +R+QA+  A   G +
Sbjct: 166 VGRGLSNQEIAAALFIAEQTVKTHVSKVLTKLDLRDRVQAVVLAYDTGLV 215


>gi|78061706|ref|YP_371614.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969591|gb|ABB10970.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 301

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 68/245 (27%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E S  +  + +      FA + +  A +      L                
Sbjct: 60  TLAHAQSTAERSRIVASLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PATYRGDYV 117

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQ--SIQEETVIESSGQLSVRLE--------GGLLPFA 116
                  D          +PI+W    ++ E      G                     +
Sbjct: 118 RHNHHDIDPRTLGARVCNMPIVWDLQQLRREHRERDDGPRVTPAALDGFLQNMQDDGMCS 177

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 236

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296

Query: 230 RFGYI 234
           +   I
Sbjct: 297 KLELI 301


>gi|161502599|ref|YP_001569710.1| transcriptional regulator NarP [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863946|gb|ABX20569.1| hypothetical protein SARI_00645 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 214

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            + + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|310287681|ref|YP_003938939.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum
           S17]
 gi|309251617|gb|ADO53365.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum
           S17]
          Length = 255

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LTERE   L     G +++EIA+KL +S+ T   ++     K++A +R+QA+  A
Sbjct: 190 PELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFA 249

Query: 229 IRFGYI 234
              G +
Sbjct: 250 YDNGLV 255


>gi|296120645|ref|YP_003628423.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012985|gb|ADG66224.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 220

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 126 FHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAA------RNLTE 176
              +GY++ TS    +A    EV+        Q+    LEL       A       +L+ 
Sbjct: 103 AGADGYLLKTSSAEEIARAIEEVLSGGASMTPQIARKVLELMSNTPPKATVPKSPSDLSL 162

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+    G T +EIA  L LS HT++ +L +   KL   NR  A+A AIR G +
Sbjct: 163 REQDVLKQVVRGLTKDEIARALKLSPHTIDTHLRNIYQKLHVHNRAGAVAIAIRDGLV 220


>gi|254410364|ref|ZP_05024143.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182570|gb|EDX77555.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 212

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G   +++T         S+A   LT RE   L+L   G  + EIA+ L +S  TV  ++ 
Sbjct: 128 GIGQKIMTQIPASVSNSSTAWDELTPREQEILRLIATGANNREIAQTLYISQKTVKNHIT 187

Query: 211 SATVKLDAVNRIQAIAKA 228
           +   +L+  +R QA   A
Sbjct: 188 NILSRLNLRDRTQAAIWA 205


>gi|116073216|ref|ZP_01470478.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9916]
 gi|116068521|gb|EAU74273.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9916]
          Length = 227

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L++   G +++EI+E L +S  TV +++ +   K+   +R QA+ KAIR G 
Sbjct: 168 LTDREMEVLKVLSSGMSNKEISESLCISSETVKSHVSTIIGKMGVKDRTQAVIKAIRAGI 227


>gi|56697383|ref|YP_167751.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56679120|gb|AAV95786.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3]
          Length = 245

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + S+ + +  +      + A   ++  I      P        L N+     D       
Sbjct: 4   ARSIDDFASVVVPFCRDVFAVQ-SVLAIRFHPSGPPEPLFKWVLENHLEALFDRDYTRFG 62

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D F          +     +       + +      G +     + F  R+    + 
Sbjct: 63  YLLDPFYKLAVETENWVACPLREIAPDRFETSEYFSNYFGPMGLVDDMGFVARVDDDTSV 122

Query: 131 YVIFTSE--FLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNL---------- 174
            +               I         ++   L +     K+       L          
Sbjct: 123 NMSIGRHAGKRRFRASEIARFRSLSTVLVPSLLSVLGKPTKRNPGVPATLEHRFLTISQN 182

Query: 175 -----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                ++RE     L   G++S  I  KLG+S +TV  +  +   KL+  ++ + 
Sbjct: 183 GENEISDREAEVATLIVQGHSSRAIGYKLGISSNTVKVHRRNLYKKLNISSQSEL 237


>gi|302869712|ref|YP_003838349.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503806|ref|YP_004082693.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302572571|gb|ADL48773.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410425|gb|ADU08542.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           G    V+ ++  L  +  +       LTERET  L+L   G + ++IA++L LS  TV  
Sbjct: 128 GLAGLVLGEYRRLAAEPPAPHDDAPRLTERETEVLRLVAKGLSYKQIADRLSLSHRTVQN 187

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ +   KL   NR++    AI  G 
Sbjct: 188 HVQNTLGKLQLHNRVELTRYAIERGL 213


>gi|284033634|ref|YP_003383565.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812927|gb|ADB34766.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 212

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 2/122 (1%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
              AG    +      +  +       + A E ++        +                
Sbjct: 93  GLRAGACGFLPKDTRPDALLDAIRT--VAAGEALLSPGATRAVITRALSRPDAPPPERLA 150

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L+L   G +++EIA+ L +S  T   ++     KL A +R+  +  A   G
Sbjct: 151 SLTAREREVLRLVAAGRSNQEIADDLVVSPLTAKTHVARILAKLGARDRVHLVIAAYEAG 210

Query: 233 YI 234
            +
Sbjct: 211 LL 212


>gi|226356417|ref|YP_002786157.1| DNA-binding response regulator [Deinococcus deserti VCD115]
 gi|226318407|gb|ACO46403.1| putative DNA-binding response regulator [Deinococcus deserti
           VCD115]
          Length = 194

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 4/129 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           L        G+                      ++ E   E      QV    +     R
Sbjct: 67  LRLTHPEVVGVLITTFSEPAIVQAARSAGARGYVSKETDPE--SLARQVRDIVMHPEIDR 124

Query: 168 SSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT RE+  L L   GY+++EIA+ LG+S  TV  +L     KLDA +R +A+
Sbjct: 125 LPHVDVPRLTPRESEVLPLLALGYSNKEIAKNLGVSPDTVKDHLARLYSKLDAGDRTEAV 184

Query: 226 AKAIRFGYI 234
           ++A   G +
Sbjct: 185 SRARSIGLL 193


>gi|187926842|ref|YP_001893187.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241665171|ref|YP_002983530.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728596|gb|ACD29760.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240867198|gb|ACS64858.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 218

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGD 187
           +        A E +I         +       +K   AA       LT RE   ++    
Sbjct: 112 LVAGIRRAAAGEPVISDRMTAK--LVAHFRAPEKAPPAATTPMPDRLTPREREIVKGLAR 169

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G +++EIA  L ++  TV  ++ +   KL+  +R+Q    A+  G 
Sbjct: 170 GESNKEIARTLDVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 215


>gi|284046383|ref|YP_003396723.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950604|gb|ADB53348.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 224

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +     LT RE    +L   G T+ EIA +L L   TV  ++ S   KL   NR Q
Sbjct: 144 DAGLTGRLAELTPRELDVARLVARGMTNAEIAAELFLGEGTVKTHVTSILSKLALRNRTQ 203

Query: 224 AIAKAIRFGYI 234
            +  A   G +
Sbjct: 204 IVVAAYESGLV 214


>gi|262283291|ref|ZP_06061057.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262260782|gb|EEY79482.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 199

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|171741205|ref|ZP_02917012.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC
           27678]
 gi|283455432|ref|YP_003359996.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823500|ref|ZP_07456875.1| two component system response regulator [Bifidobacterium dentium
           ATCC 27679]
 gi|309802650|ref|ZP_07696754.1| transcriptional regulator, LuxR family [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276819|gb|EDT44480.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC
           27678]
 gi|283102066|gb|ADB09172.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553207|gb|EFM41119.1| two component system response regulator [Bifidobacterium dentium
           ATCC 27679]
 gi|308220714|gb|EFO77022.1| transcriptional regulator, LuxR family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 230

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 168 DRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 227

Query: 232 GYI 234
             +
Sbjct: 228 RIV 230


>gi|315182709|gb|ADT89622.1| two component transcriptional regulator, LuxR family [Vibrio
           furnissii NCTC 11218]
          Length = 197

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERET 179
           V+ G         +S+ L+LA N+V       C Q     L    +K +     L++RE+
Sbjct: 82  VKAGAKGYVLKDVSSDELVLAINQVAQGRSYLCPQASDKLLAQFNEKPAERDETLSKRES 141

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+    G  +++IA+ L +SV TV  +      KL A +    +  A+  G +
Sbjct: 142 DVLKAIVSGCGNKDIADTLHISVRTVETHRLRIKKKLGASSTAALVKLALEKGLV 196


>gi|297559326|ref|YP_003678300.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843774|gb|ADH65794.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 210

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182
               GY++  +    LA  V   A G      ++        ++R   A  L+ RE   L
Sbjct: 96  AGATGYLLKDTPRAELAEAVRAAARGETVLTGRLAGRLFTGMRRRGEPAAVLSPREVEVL 155

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +LA +G T+  I   L +S  TV  +L     KL   +R  A+++AIR G +
Sbjct: 156 RLASEGRTNAAIGRALHISPTTVKTHLMRVYDKLGVGDRTSAVSQAIRRGLL 207


>gi|172063708|ref|YP_001811359.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996225|gb|ACB67143.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 243

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 21/230 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNILIETY 72
             +    L        A  FA  +           +    EL                  
Sbjct: 12  AADWQRALRACVAAFDA--FASPSAIVFYRLDLNGEPADFELFGMPESMHRTYLA-RYRM 68

Query: 73  GDDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVR----------LEGGLLPFAG 117
            D        +G+  ++     + +E    S+   +   R          L        G
Sbjct: 69  LDPLHPSRCAAGVRAVVTLASQLPDERRAASAYWTRFLRRHEVADVVEIWLRDDAGRTVG 128

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLT 175
               +R G            F     + +          +   L   +  +R      LT
Sbjct: 129 AFSLLRFGKGDAEGTSTAGRFAPGEVDALARLQPVAEAALVPLLRARRGIRRIDCEERLT 188

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            RE    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 189 YREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 238


>gi|217974227|ref|YP_002358978.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217499362|gb|ACK47555.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 216

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L     G++++EIA  + L+  TV  ++ +   KLD  +R QA+ K ++ 
Sbjct: 154 ELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQL 213

Query: 232 GYI 234
             I
Sbjct: 214 ALI 216


>gi|325965270|ref|YP_004243176.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323471357|gb|ADX75042.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 230

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                      +LT RET  L+   +G ++ EIA +  LS  TV  ++     KL   +R
Sbjct: 151 RPAPAPDPLLADLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDR 210

Query: 222 IQAIAKAIRFGYI 234
           +QA+  A   G +
Sbjct: 211 VQAVVYAYETGLV 223


>gi|303326587|ref|ZP_07357030.1| putative twin-arginine translocation pathway signal [Desulfovibrio
           sp. 3_1_syn3]
 gi|302864503|gb|EFL87434.1| putative twin-arginine translocation pathway signal [Desulfovibrio
           sp. 3_1_syn3]
          Length = 598

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  +R      L+ RE   L L   G ++ +IA +L LS  TV  ++ +  +KL   NR+
Sbjct: 100 MQFRRIDPPWGLSLRELDVLTLLSAGLSNPDIAHELFLSPRTVAKHVENIFIKLAVKNRV 159

Query: 223 QAIAKAIRFGYI 234
            A+  A+  G +
Sbjct: 160 HAVRLALDHGLV 171


>gi|225025132|ref|ZP_03714324.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC
           23834]
 gi|224942093|gb|EEG23302.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC
           23834]
          Length = 224

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 40/94 (42%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
               + +         V +          SA   LT RE   L+    GY+++ IA+++ 
Sbjct: 121 AANGDNVFSPEMMACMVQSLIRPAQPATESALDTLTSRELEVLRYLAVGYSNKIIAKRMD 180

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+  TV  ++ +   KL+  +R+QA   A++   
Sbjct: 181 LAESTVKVHVQNILRKLELGSRVQAAVYAVQHNL 214


>gi|169825786|ref|YP_001695944.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990274|gb|ACA37814.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 199

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE+  L L  +G T++EIA +L LS  TV  Y+ +   KL+  NRI+AIA+    G
Sbjct: 137 PLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKG 196

Query: 233 Y 233
           +
Sbjct: 197 W 197


>gi|88856002|ref|ZP_01130664.1| two-component response regulator [marine actinobacterium PHSC20C1]
 gi|88814869|gb|EAR24729.1| two-component response regulator [marine actinobacterium PHSC20C1]
          Length = 209

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
              +GY++  +    +   +   A G          L + + R  A   L+ERET  L L
Sbjct: 96  AGASGYLLKAAPQDEILAGLRSVARGEVALAPSIAALLVKRMREPARVALSERETQVLAL 155

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G ++  IA  L +S  TV  +L     KLD  +R +A+ KA+  G +
Sbjct: 156 VAEGNSNRAIAAALFVSEATVKTHLIHVFEKLDVKDRTRAVTKAMELGLL 205


>gi|306837140|ref|ZP_07470077.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304566988|gb|EFM42616.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 223

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 34/73 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  +   +LT RE   LQL   G ++ +I   L LS  TV ++L     KL   +R
Sbjct: 151 RLMTRVRTPRTSLTPRELEVLQLVAAGASNRQIGHDLMLSEATVKSHLVHIYDKLGVRSR 210

Query: 222 IQAIAKAIRFGYI 234
             A+A A   G +
Sbjct: 211 TSAVAAAREQGVL 223


>gi|302555756|ref|ZP_07308098.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302473374|gb|EFL36467.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 221

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177
              +GYV+ +     L                GA   +I ++L  +        + LT R
Sbjct: 103 AGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRHGEEPPEQILTPR 162

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  +G++S+EIAE L +S+ TV+ +  +   KL   +R++    AIR G I
Sbjct: 163 EEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGLI 219


>gi|197335823|ref|YP_002157200.1| regulatory protein CsgD [Vibrio fischeri MJ11]
 gi|197317313|gb|ACH66760.1| regulatory protein CsgD [Vibrio fischeri MJ11]
          Length = 214

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +  +     ++I  + E      S + +LT RE+  L+L   G ++ +IA  L +S +T
Sbjct: 121 EMWLSRKIINELIFAYREKQSAILSTSISLTTRESEILRLLASGASNVDIANSLFVSENT 180

Query: 205 VNAYLGSATVKLDAVNRIQAIAKA 228
           V  +L +   KL+  NR+QA+  A
Sbjct: 181 VKTHLYNVFKKLNVKNRLQAMMWA 204


>gi|157059906|dbj|BAF79713.1| putative two-component system response regulator [Streptomyces
           kasugaensis]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 40/109 (36%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L + +   A G           +  +  S   +LT+RE   L   
Sbjct: 106 AGATGYLLKAERPEELFSAIQAAAQGRTTLSAPVASRVMARMRSPRPSLTDRERDILAQL 165

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + +IA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 166 AQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 214


>gi|149923436|ref|ZP_01911840.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149815688|gb|EDM75215.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 220

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAARNL 174
           +R G             L+ A   +   +      +   L    +           A +L
Sbjct: 97  IRAGASGYLLKGSGLSDLVTAIREVAGGNAFFSPTVAKILLQESRGERSVKEAPDPADSL 156

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L L G+G +S EIA+ LGLSV T+  + G    KL   N    + +AIR G +
Sbjct: 157 TKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVAGLVRQAIRIGLV 216


>gi|148240620|ref|YP_001226007.1| LuxR family transcriptional regulator [Synechococcus sp. WH 7803]
 gi|147849159|emb|CAK24710.1| Transcriptional regulator, luxR family [Synechococcus sp. WH 7803]
          Length = 92

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +   +   +L+ RE   ++L  +G T++EIAE+L +S  TV+ ++ +   K  + NR+ 
Sbjct: 4   AEGADAMNVSLSARELEIIELVSEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVA 63

Query: 224 AIAKAIRFGYIC 235
            +  A+  G IC
Sbjct: 64  LLNWAMDHGKIC 75


>gi|326445496|ref|ZP_08220230.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 244

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +     LT RE    +L   G  +  IA ++ +S  TV  ++ +   KL   +R
Sbjct: 166 AAGTGPTGVPDGLTPREREVWRLIAAGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDR 225

Query: 222 IQAIAKAIRFGYI 234
            QA+  A   G +
Sbjct: 226 AQAVIAAYEAGLV 238


>gi|294102345|ref|YP_003554203.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617325|gb|ADE57479.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 231

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L     G ++ E+A K+ LS  TV  ++     KLD  +R QA   A R G
Sbjct: 151 ELTPREKEILYWLAQGLSNSEVASKMVLSEKTVKNHVSHVLKKLDLRDRTQAAILAWRIG 210

Query: 233 Y 233
           +
Sbjct: 211 F 211


>gi|307150964|ref|YP_003886348.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306981192|gb|ADN13073.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822]
          Length = 90

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ERE   ++L  +G T+ EIA +L +S  TV+ ++ +   K    NR++ +  A+++G
Sbjct: 11  SLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQWG 70

Query: 233 YIC 235
            +C
Sbjct: 71  KVC 73


>gi|110636531|ref|YP_676738.1| two component LuxR family transcriptional regulator [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279212|gb|ABG57398.1| two component transcriptional regulator, LuxR family [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+RE   L+    G +++ IA+KL +SV TV  +  +   KLD  N  + I KA+ 
Sbjct: 152 AETLTKRELEVLKEVSMGLSTKLIADKLFISVRTVETHRINLMKKLDVHNSAELIKKAMD 211

Query: 231 FGYI 234
              I
Sbjct: 212 LNII 215


>gi|315295459|gb|EFU54787.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 153-1]
          Length = 230

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 14/144 (9%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 81  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL+  +R+ A    ++   I
Sbjct: 201 NLLRKLNVRSRVAATILFLQQRII 224


>gi|161616094|ref|YP_001590059.1| hypothetical protein SPAB_03896 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365458|gb|ABX69226.1| hypothetical protein SPAB_03896 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 227

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 18  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     ++  +     +                    I   +R G      +      + 
Sbjct: 70  SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +     LT +E   + +  +G +++ IA +L +
Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLESILTAKEREIVGMVCEGASNKLIARQLNI 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|282898244|ref|ZP_06306235.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9]
 gi|281196775|gb|EFA71680.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9]
          Length = 97

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   + L   G T++EIA KL +S  TV+ ++ +   K    NR+  +  A+++G 
Sbjct: 12  LSDREMQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQWGK 71

Query: 234 IC 235
           +C
Sbjct: 72  VC 73


>gi|37676043|ref|NP_936439.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|37200583|dbj|BAC96409.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
          Length = 219

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   LQ    G ++ EIA+ L +S HT+ ++L +   K+D  NR QA A A R 
Sbjct: 160 ELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKRN 218


>gi|294816579|ref|ZP_06775221.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|294321394|gb|EFG03529.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 223

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +     LT RE    +L   G  +  IA ++ +S  TV  ++ +   KL   +R
Sbjct: 145 AAGTGPTGVPDGLTPREREVWRLIAAGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDR 204

Query: 222 IQAIAKAIRFGYI 234
            QA+  A   G +
Sbjct: 205 AQAVIAAYEAGLV 217


>gi|206562366|ref|YP_002233129.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198038406|emb|CAR54363.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 510

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 89  WQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFTSEFLMLA 142
           W  I+           + V++                  +         ++  S+     
Sbjct: 329 WSRIEGRLAGDGHVRNVDVQIRTRDGDVRDCVVSADPVAIHGRDCLLVALLDISDRKRTE 388

Query: 143 NEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTS 191
            E+       + +A      +I     + +  +  A      LT RE     L   G   
Sbjct: 389 MELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLAD 448

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EIA +LGL+ +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 449 KEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|223936027|ref|ZP_03627941.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895249|gb|EEF61696.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 35/77 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+  F            NL+ RE   L     G+  +EIAEKLG+S  TV+ Y+ 
Sbjct: 129 HIARKVVQSFRAPTAATPPPEHNLSTREQEVLDCLSQGFLYKEIAEKLGISYETVHTYIR 188

Query: 211 SATVKLDAVNRIQAIAK 227
               KL    R +A+AK
Sbjct: 189 RIYEKLQVRTRTEAVAK 205


>gi|160874438|ref|YP_001553754.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160859960|gb|ABX48494.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315266674|gb|ADT93527.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 216

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 162 ELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++ + + + +        L+ERE   L     G++++EIA  + L+  TV  ++ +   K
Sbjct: 138 QMSEPKPAPSVGETRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTK 197

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           LD  +R QA+ K ++   I
Sbjct: 198 LDCRDRTQAVLKGLQLALI 216


>gi|317495606|ref|ZP_07953974.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914420|gb|EFV35898.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 199

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +        L+++ET  L+    G +++EIA +L LS  T   Y+ +   KLD  NR
Sbjct: 127 ELMENIFMNHNPLSKQETLLLKKVKHGLSNKEIAAELFLSEGTTRNYISNILTKLDCKNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+ KA   G+I
Sbjct: 187 TEAVKKATEKGWI 199


>gi|300741753|ref|ZP_07071774.1| two-component system response regulator [Rothia dentocariosa M567]
 gi|300380938|gb|EFJ77500.1| two-component system response regulator [Rothia dentocariosa M567]
          Length = 250

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L+ RE   L+L   G ++ EI+  L LS  T+  ++     KLDA +R+QA+  A   
Sbjct: 187 QTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLAKLDARDRVQAVIMAYEA 246

Query: 232 GYI 234
           G +
Sbjct: 247 GIV 249


>gi|284041827|ref|YP_003392167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946048|gb|ADB48792.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V +    +  +  ++   +L                   L   ++     R+LTERE   
Sbjct: 116 VHVVAGGDALLAPSATRRLLDR-------------FAGELPGDERPLPDLRDLTERELDV 162

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+L   G ++ E+A  L LS  TV  ++ S   KL   +R+QA+  A   G 
Sbjct: 163 LRLVAQGLSNAELAAYLVLSEATVKTHVSSVLRKLGLRDRVQAVVLAYDVGL 214


>gi|302548366|ref|ZP_07300708.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465984|gb|EFL29077.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERET 179
              +G++   +    +A+ + + A G           L   R            LT RE 
Sbjct: 108 AGASGFIRKRAPAQQIAHAIRLVASGDSVLFPEAVARLTTGRPPRREAAARVAALTRREA 167

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             L+L  +G T+++IAE L +S+ TV  ++G+   KL A NR QA+  A   G 
Sbjct: 168 EILRLMAEGLTNQQIAEVLTVSLETVKTHVGNVLTKLGAGNRTQAVILAFEAGL 221


>gi|253701702|ref|YP_003022891.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251776552|gb|ACT19133.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 223

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G ++ +IA  + LS  TV  +  +   KLD  ++++ +  A R G 
Sbjct: 157 LTPREQQVLRLVAEGSSTRQIAAAIELSPKTVENHRTNLMKKLDVHSKMELVKYAARLGL 216

Query: 234 I 234
           I
Sbjct: 217 I 217


>gi|259649548|dbj|BAI41710.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 203

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++ +  LTERE + L     G +S++IA  L LS  TV  YL +   KL   NRI+AI  
Sbjct: 136 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 195

Query: 228 AIRFGYI 234
           A R  ++
Sbjct: 196 AKRNKWL 202


>gi|229000917|ref|ZP_04160386.1| Response regulator receiver [Bacillus mycoides Rock3-17]
 gi|228758834|gb|EEM07909.1| Response regulator receiver [Bacillus mycoides Rock3-17]
          Length = 224

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K SS    LT+RE   LQL   G  ++EIA  L +S   V  ++ +   KL+  +R QA
Sbjct: 154 PKASSFIEPLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQA 213

Query: 225 IAKAIRFGYI 234
           +   I    +
Sbjct: 214 VVLGICMQLV 223


>gi|229008966|ref|ZP_04166312.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228752300|gb|EEM01982.1| Response regulator receiver [Bacillus mycoides Rock1-4]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K SS    LT+RE   LQL   G  ++EIA  L +S   V  ++ +   KL+  +R QA
Sbjct: 145 PKASSFIEPLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQA 204

Query: 225 IAKAIRFGYI 234
           +   I    +
Sbjct: 205 VVLGICMQLV 214


>gi|226305274|ref|YP_002765232.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184389|dbj|BAH32493.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 210

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETS 180
           V  G          +  L+ A   +     A   +  +  +     +SS+   LT+RE  
Sbjct: 97  VHAGARGYVVKDVDTTELVRAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELE 156

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+L  +G ++ +I E+L +S  TV  ++ +   KL+   R +A+  A + G I
Sbjct: 157 VLRLLANGLSNIKIGERLFISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 210


>gi|212640069|ref|YP_002316589.1| transcriptional regulator LuxR family [Anoxybacillus flavithermus
           WK1]
 gi|212561549|gb|ACJ34604.1| Transcriptional regulator LuxR family [Anoxybacillus flavithermus
           WK1]
          Length = 194

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
                + FPV+   +    +IF S  +    N  I+        +I +     +  +   
Sbjct: 75  GLLTWLVFPVQTKTNDCRVLIFISYPYHDDENYFIVCLIETVTLIIQEKYR-EQFLALEI 133

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             L+ERE     L   GY+++EIA++L LS HT+  ++ +   KLD   R Q IAK
Sbjct: 134 EQLSERERQVFFLLLKGYSNKEIAKELILSEHTIKNHINNLFQKLDVKRRSQLIAK 189


>gi|27367916|ref|NP_763443.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
 gi|27359489|gb|AAO08433.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
          Length = 210

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   LQ    G ++ EIA+ L +S HT+ ++L +   K+D  NR QA A A R 
Sbjct: 151 ELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKRN 209


>gi|298248387|ref|ZP_06972192.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551046|gb|EFH84912.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
              A   LTERE   L L   G  + EIA++L LS+ TV  +L +   KL   +R+QAI 
Sbjct: 148 PPQAFPELTEREREILSLLAQGLNNAEIAQRLVLSLKTVRNHLSNVFNKLQVADRVQAII 207

Query: 227 KAIRFGY 233
           +A   G 
Sbjct: 208 RAREAGL 214


>gi|293394993|ref|ZP_06639281.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera
           DSM 4582]
 gi|291422521|gb|EFE95762.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera
           DSM 4582]
          Length = 222

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-----------V 156
           +    +    I   V    +    +I       L  +   E      +            
Sbjct: 85  MRHDGVDARIIVLTVSDARNDVYALIDAGADGYLLKDSEPEQLLTSIRLAAEGENVISDA 144

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + D+L    ++     +LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 145 VADYLSSRSEQHDPFADLTERELDVLQEVARGMSNKQVAVQLHISEETVKVHIRNMLRKL 204

Query: 217 DAVNRIQAIAKAIRF 231
           D  +R+ A    +  
Sbjct: 205 DVRSRVAATVMYLEH 219


>gi|269103218|ref|ZP_06155915.1| nitrate/nitrite response regulator protein [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163116|gb|EEZ41612.1| nitrate/nitrite response regulator protein [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 208

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           +    +    +   V         ++              + +I               +
Sbjct: 71  MRNEGISSTIVVLTVSDSRADIKALVAAGADGYLLKDTEPDELIALLHQALAGGEAYSSI 130

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + ++L     + S    LT+RE   LQ    G+ +++IA+ L +S  TV  ++ S   KL
Sbjct: 131 VKEYLSDDLAQDSLLSTLTDRELQILQEVAKGHRNKQIADTLFISESTVKVHMKSLLKKL 190

Query: 217 DAVNRIQAIAK 227
              +R  A   
Sbjct: 191 QVKSRTAATVL 201


>gi|257791491|ref|YP_003182097.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|257475388|gb|ACV55708.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
          Length = 214

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAAR 172
           + + +R G         TSE L+ A   + E     +  +T  L        ++   + +
Sbjct: 91  LFYTLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGGEEEDRSYQ 150

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   LQL   G+T++EI+E++ LSV TV A+      KL    R   +  A+R  
Sbjct: 151 QLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHK 210

Query: 233 YI 234
            +
Sbjct: 211 LL 212


>gi|258508232|ref|YP_003170983.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus GG]
 gi|257148159|emb|CAR87132.1| Two-component response regulator, LuxR family [Lactobacillus
           rhamnosus GG]
          Length = 202

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++ +  LTERE + L     G +S++IA  L LS  TV  YL +   KL   NRI+AI  
Sbjct: 135 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 194

Query: 228 AIRFGYI 234
           A R  ++
Sbjct: 195 AKRNKWL 201


>gi|240014094|ref|ZP_04721007.1| NarL/NarP [Neisseria gonorrhoeae DGI18]
 gi|240016529|ref|ZP_04723069.1| NarL/NarP [Neisseria gonorrhoeae FA6140]
 gi|240115736|ref|ZP_04729798.1| NarL/NarP [Neisseria gonorrhoeae PID18]
 gi|240118032|ref|ZP_04732094.1| NarL/NarP [Neisseria gonorrhoeae PID1]
 gi|240121656|ref|ZP_04734618.1| NarL/NarP [Neisseria gonorrhoeae PID24-1]
 gi|268601415|ref|ZP_06135582.1| two-component system response regulator [Neisseria gonorrhoeae
           PID18]
 gi|268603746|ref|ZP_06137913.1| two-component system response regulator [Neisseria gonorrhoeae
           PID1]
 gi|268585546|gb|EEZ50222.1| two-component system response regulator [Neisseria gonorrhoeae
           PID18]
 gi|268587877|gb|EEZ52553.1| two-component system response regulator [Neisseria gonorrhoeae
           PID1]
          Length = 218

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +R+ A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA 
Sbjct: 145 QRTQALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAA 204

Query: 226 AKAIRF 231
             AIR 
Sbjct: 205 VYAIRH 210


>gi|119510573|ref|ZP_01629703.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena
           CCY9414]
 gi|119464734|gb|EAW45641.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena
           CCY9414]
          Length = 87

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L++RE   + L   G T+++IA KL +S  TV+ ++ +   K    NR+  +  A+++G
Sbjct: 11  SLSDRELQIIDLVAAGLTNQDIAVKLEISKRTVDNHISNILTKTQTENRVALVRWALQWG 70

Query: 233 YIC 235
            IC
Sbjct: 71  KIC 73


>gi|307324556|ref|ZP_07603763.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889800|gb|EFN20779.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 10/123 (8%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173
           +R G         +++ L  A  V+          IT  L     R SAA          
Sbjct: 98  LRAGASGFLLKDASADELAHAVRVVAAGDALLAPNITKRLIGEFSRVSAAAPRGPLRDRV 157

Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERET  L L   G ++ EIA +L ++  TV  ++     KL   +R QA   A   
Sbjct: 158 GDLTERETEVLTLIAQGLSNAEIAARLVVAEQTVKTHVSRILFKLGLRDRTQAAVFAYET 217

Query: 232 GYI 234
           G +
Sbjct: 218 GLV 220


>gi|29828980|ref|NP_823614.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606085|dbj|BAC70149.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG    +      +  V      L     +         + +++        S     
Sbjct: 102 LRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSEPERGQAASSEVPDG 161

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L  +G ++ EIA +L +S  TV  ++ +   K    +R QA+  A   G 
Sbjct: 162 LTAREAEVLVLIAEGLSNHEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGL 221

Query: 234 I 234
           +
Sbjct: 222 V 222


>gi|56479027|ref|YP_160616.1| nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1]
 gi|56315070|emb|CAI09715.1| Nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1]
          Length = 226

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S    L+ RE   L     G +++EIA KL L+  TV  ++ +   KL+  +R+QA   
Sbjct: 155 ASELNKLSPREREILAFLARGQSNKEIARKLELAESTVKIHVQNVLRKLNLTSRVQAAVF 214

Query: 228 AIRFGYI 234
           A+  G +
Sbjct: 215 AVEQGIV 221


>gi|320335412|ref|YP_004172123.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319756701|gb|ADV68458.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 213

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 140 MLANEVIIEAHGACYQ---------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +  + +        +                L ++       LT RE   L L   G +
Sbjct: 108 DVDADELARVIRLVARGERFIQPTVAAKYLRLLAQRPQEPQEPLTPREHEVLALIARGDS 167

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ IA +LG+S  TV  ++ S   KL   NR +A  +A   G
Sbjct: 168 NKRIAAQLGISDSTVKNHISSVLAKLQVRNRTEAALRARTLG 209


>gi|153832308|ref|ZP_01984975.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
 gi|148871619|gb|EDL70474.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
          Length = 217

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L+ +++    G    +     EL  K       LT RE   L     G ++ +IA+ L +
Sbjct: 128 LSRDILNRLVGYLVNLNHTVTELDTKL---EIELTRREMQVLTALCQGGSNLDIADSLFV 184

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           S HTV ++L S   KL+  NR+QAIA A R 
Sbjct: 185 SEHTVKSHLYSIFRKLEVKNRMQAIAWAKRN 215


>gi|326391343|ref|ZP_08212882.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992606|gb|EGD51059.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 257

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLT 175
            IA P+ +     GY+  ++    + +E+++      Y++++D++ +F  ++  +R  L 
Sbjct: 138 CIAIPLIIDDEIIGYLDLSTIKDSMVDEMVVIVELLAYKIVSDYIRMFGNKAKNSRVKLK 197

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E +   L+L   GY    IA++LG+S++TVN +  +   KLD  +  +AIAKAIR G I
Sbjct: 198 EEQLKVLKLVTKGYKDIVIAKELGISINTVNYHKRNIFKKLDVRSTREAIAKAIRMGLI 256


>gi|317125624|ref|YP_004099736.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589712|gb|ADU49009.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 237

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   L+L   G  + EIA +L +S +TV  ++ +   KL   +R++A   A+R 
Sbjct: 171 PRLTERELGILRLVARGRLNREIARELFISENTVRNHIRNILDKLQMHSRMEAAMYAVRK 230

Query: 232 GYI 234
             I
Sbjct: 231 RLI 233


>gi|291455021|ref|ZP_06594411.1| two component system response regulator [Streptomyces albus J1074]
 gi|291357970|gb|EFE84872.1| two component system response regulator [Streptomyces albus J1074]
          Length = 297

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 11/209 (5%)

Query: 28  IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH-FNSGLLP 86
           ++A   A  +     +      L+     +  D   +   L      + + H       P
Sbjct: 14  LRALFAATPSFRIEGEAENGDALVELARLHAPDVVLMDAALPGPRVLEVVRHLARDQPHP 73

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLP--FAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144
           I    +  E     +  L     G       +G    +  G               ++  
Sbjct: 74  IGVVLLVSEQGPADTWVLEAARAGARGLLLKSGGQEAILSGVRDVAAGGIAMSTEFVSQ- 132

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                      + + +L   ++       LT RE    +L   G T+++I+ +L LS  T
Sbjct: 133 -------ILKALHSAYLPAAERPFRDISLLTPREMQVFRLVSQGLTNQQISNRLVLSEAT 185

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V ++      KLD  NR+ A+  A   G 
Sbjct: 186 VKSHFNRICHKLDLRNRVDAVILAYETGI 214


>gi|302544370|ref|ZP_07296712.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461988|gb|EFL25081.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 232

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LTERE   + L   G ++ EIA +L LS  TV  ++G    KL+  +R+Q +  A
Sbjct: 160 PELERLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLELRDRVQVVVMA 219

Query: 229 IRFGYI 234
              G +
Sbjct: 220 YETGLV 225


>gi|261401222|ref|ZP_05987347.1| nitrate/nitrite response regulator protein NarL [Neisseria
           lactamica ATCC 23970]
 gi|269208805|gb|EEZ75260.1| nitrate/nitrite response regulator protein NarL [Neisseria
           lactamica ATCC 23970]
          Length = 218

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AIR 
Sbjct: 152 SLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210


>gi|150003000|ref|YP_001297744.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|149931424|gb|ABR38122.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
          Length = 214

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               C + +        K+      LT  E   L+L   G T++EIA +  LSV+TV  +
Sbjct: 122 LQYMCTRAVWLLQHKEDKKDKLVSPLTVTEREILKLMALGKTTKEIAAERFLSVYTVMTH 181

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
             +   KL+  N  +A   A+R G +
Sbjct: 182 RKNIFRKLEVNNVHEATKYALRAGIV 207


>gi|22298266|ref|NP_681513.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294445|dbj|BAC08275.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 209

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 13/141 (9%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD------- 159
           RL+        +         +    + +           IE          +       
Sbjct: 69  RLKREFPDIRVVMLTSHQSALEAVAALSSGADAYCIKGERIERLLMAIAAAQEGATYLDP 128

Query: 160 ------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                    L   + +   +L++RE   L+L  +GY++ EIA KL LS +TV  ++    
Sbjct: 129 QIARHVIQHLHSPQPTMDYHLSQRELDVLKLMVEGYSNPEIAGKLFLSPNTVKTHVRGIL 188

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL   +R+QA   A+R G +
Sbjct: 189 NKLAVDDRVQAAVVALRNGLV 209


>gi|254393192|ref|ZP_05008347.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
 gi|294811637|ref|ZP_06770280.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440178|ref|ZP_08214912.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706834|gb|EDY52646.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
 gi|294324236|gb|EFG05879.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 223

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A    + A     ++I +F  L     +  R     LTERET  L 
Sbjct: 108 DASAAELAHAVRVVAAGDALLAPAVTKRLIAEFSRLTGAPRAPLRERVGTLTERETEVLA 167

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA  L ++  TV  ++G   VKL   +R QA   A   G +
Sbjct: 168 LIAQGLSNAEIATALVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 218


>gi|153003783|ref|YP_001378108.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027356|gb|ABS25124.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 202

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                AA  LT RE   L L  +G  ++ IA +LG+S HT   ++ +   KL   +R +A
Sbjct: 131 PDAPLAAEGLTRREREVLALLAEGLANKAIAARLGISEHTAKFHVNAILGKLGVESRAEA 190

Query: 225 IAKAIRFGYI 234
           I +A R G +
Sbjct: 191 IVRAARLGLV 200


>gi|94968718|ref|YP_590766.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550768|gb|ABF40692.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 208

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 7/149 (4%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVII 147
                  S    + ++       A +   +          +            +  ++I 
Sbjct: 57  DCAMPGMSGMDATKQIRTQWPDIAVLMLTMHSEDTWVRLALEAGANGYILKSAIDLDLIQ 116

Query: 148 EAHGAC--YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                     V+   +E    + + +  LT RE   LQL   G +++EIA  L LSV+TV
Sbjct: 117 AVRRVANGETVLDPKVEKPTLKGNKSMGLTNRELEILQLIVSGKSNKEIASDLSLSVNTV 176

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +  +    L   N  + +  AI+ G +
Sbjct: 177 SVHRANIMEGLGIHNTAELVVYAIKNGLV 205


>gi|49078596|gb|AAT49800.1| PA4074 [synthetic construct]
          Length = 223

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 14/219 (6%)

Query: 16  ELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +L PR +      + A     Y I+        +    +L                   D
Sbjct: 8   DLGPRCMQAFTQVVPASLCVFYRID-----EDCRAHDFQLLRMPAGMHRDYLRH-YRDYD 61

Query: 75  DFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                H  +   P++               L             +             + 
Sbjct: 62  PLQPRHCLASASPVVPLRQGIARQPAEDSALYQGFLRRHGICDVVEVLAHAHQRPVAALS 121

Query: 134 FTSE-----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +     F       +   HG   ++           +   + LT RE     L  DG
Sbjct: 122 LLRDARLGAFSDQELRQLRALHGL-MELAAQACATPTASAERLQGLTPREREIALLLRDG 180

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +++ +A+ LGL + TV  +L +   K  A +R + + +
Sbjct: 181 VSNKCLAQCLGLGLPTVKTHLLNLFRKTGARSRTELVKR 219


>gi|152965166|ref|YP_001360950.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359683|gb|ABS02686.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 1/160 (0%)

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             L         I+   +     +       V         AG +  +         V  
Sbjct: 63  PVLD-GLEATRRILAAGLDPAPRVLVLTTFDVDDYVFSALQAGASGFLLKDATPEVLVDS 121

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                   + +         +             +A  +LT RE   L     G +++EI
Sbjct: 122 VRAVARGDSLLAPGITRRLIEHFVSTRRRAVDVPAALADLTPREREVLVCIARGLSNQEI 181

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  T   ++     KL   +R+QA+      G +
Sbjct: 182 AAELFIAEQTTKTHVSRVLTKLGLRDRVQAVVLGYEIGLV 221


>gi|218662807|ref|ZP_03518737.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 102

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + E        I +      ++     E        +  LT+RE+  ++   +G TS 
Sbjct: 1   MLSGEREEPDQGEIADLLLDAMRIFDKLYE-EILTQEMSGRLTQRESEIVKWTSEGKTSA 59

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  LGLS HTVN+++ +A  KLDAVNR+  +A A+R G +
Sbjct: 60  EIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 101


>gi|18092665|gb|AAL59394.1| putative regulatory protein [Burkholderia cenocepacia]
          Length = 302

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 70/245 (28%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  A +      L                
Sbjct: 61  TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFARERVESLYLHEAFT--PATYRGDYV 118

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQ----------SIQEETVIESSGQLSVRLEGGLLPFA 116
                  D          +PI+W              +  V  ++    ++        +
Sbjct: 119 RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDDDSCVSPAALDGFLQTMQDDGMCS 178

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 179 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 237

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 238 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 297

Query: 230 RFGYI 234
           +   I
Sbjct: 298 KLELI 302


>gi|77463659|ref|YP_353163.1| two component transcriptional regulator, LuxR [Rhodobacter
           sphaeroides 2.4.1]
 gi|221639502|ref|YP_002525764.1| LuxR family two component transcriptional regulator [Rhodobacter
           sphaeroides KD131]
 gi|332558515|ref|ZP_08412837.1| Two component transcriptional regulator, LuxR family protein
           [Rhodobacter sphaeroides WS8N]
 gi|77388077|gb|ABA79262.1| two component transcriptional regulator, LuxR [Rhodobacter
           sphaeroides 2.4.1]
 gi|221160283|gb|ACM01263.1| Two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides KD131]
 gi|332276227|gb|EGJ21542.1| Two component transcriptional regulator, LuxR family protein
           [Rhodobacter sphaeroides WS8N]
          Length = 210

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAE 196
            + +    I    A    +   L   ++++  +    LTE+E   +    +G  ++EIA 
Sbjct: 113 PVRSLGNAIRFMHAGEHYLPLELARDRRQAPDSSGGRLTEKEMLVMSYLAEGRQNKEIAH 172

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L+  T+  ++ S   KL A NR QA+  A   G I
Sbjct: 173 GLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210


>gi|306823235|ref|ZP_07456611.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801640|ref|ZP_07695761.1| response regulator receiver domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553867|gb|EFM41778.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221772|gb|EFO78063.1| response regulator receiver domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 248

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA++L +S+ TV  ++     K++A +R+QA+  A
Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFA 242

Query: 229 IRFGYI 234
                +
Sbjct: 243 YENHLV 248


>gi|218549608|ref|YP_002383399.1| transcriptional regulator NarP [Escherichia fergusonii ATCC 35469]
 gi|218357149|emb|CAQ89784.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia fergusonii ATCC 35469]
 gi|325498005|gb|EGC95864.1| transcriptional regulator NarP [Escherichia fergusonii ECD227]
          Length = 216

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 14/141 (9%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              E ++ A           
Sbjct: 73  LNALRRDGVTAQIIIITVSDSASDIYALIDAGADGYLLKDSEPESLLAAIQKGANGGKVF 132

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++++L   ++  S       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 133 SARVSEYLRERERFGSKDDPFSTLTERELDVLHELAKGLSNKQIASALNISEQTVKVHIR 192

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           +   KL+  +R+ A    ++ 
Sbjct: 193 NLLRKLNVRSRVAATILFLQH 213


>gi|70732431|ref|YP_262193.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346730|gb|AAY94336.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 911

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 5/145 (3%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
            ++          +  +           +   + L     G++        L   V    
Sbjct: 771 AALLLAAGRGPQARQDLAQALEAGVGGAMQPFMALLHGHPGWM-----REQLQQGVSTAL 825

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             A  + +       ++ ++   +L+ RE S LQL   G +++EI+E+L +S+HTV  + 
Sbjct: 826 TQALLERLPAASREPQEIAAHNESLSSRELSVLQLIAQGCSNQEISERLFISLHTVKTHA 885

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL    R QA+A+A   G +
Sbjct: 886 SHINSKLGVERRTQAVARAQELGLL 910


>gi|328463247|gb|EGF34958.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 201

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++ +  LTERE + L     G +S++IA  L LS  TV  YL +   KL   NRI+AI  
Sbjct: 135 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 194

Query: 228 AIRFGYI 234
           A R  ++
Sbjct: 195 AKRNKWL 201


>gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 231

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 78/228 (34%), Gaps = 14/228 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALD---FPRRQQLICELHNYDLDSGDIPNILIE 70
           + +       ++  ++   F +   ++A +     ++      + +  +   D    L +
Sbjct: 8   VDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDVMMPQVDGYQFLKQ 67

Query: 71  TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
              D          LP+I+   + +  + +      +   L     P   IA    L   
Sbjct: 68  LRDDP-----RFASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLLEK 122

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQLA 185
           +        E      E+   AH       +++  + + +     A +LT RE S L L 
Sbjct: 123 RVTQTTVVGEDSE-NIEIAKLAHEIAKIKDLLSPKIGISQTPPPFAIDLTPREQSVLNLV 181

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             G  ++EIA KL  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 182 AQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|317488844|ref|ZP_07947374.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316911918|gb|EFV33497.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 228

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                ++   +               L      ++  R LT+RE   L L   G+T++EI
Sbjct: 124 AQGDALIEPSITRRLIETFVAARPASLGGAAAVAAGLRTLTDREREILALVARGFTNDEI 183

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L +S  TV  +L     KLDA +R Q + +A   G +
Sbjct: 184 GSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGGLV 223


>gi|283455737|ref|YP_003360301.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|283102371|gb|ADB09477.1| Two-component response regulator [Bifidobacterium dentium Bd1]
          Length = 251

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA++L +S+ TV  ++     K++A +R+QA+  A
Sbjct: 186 PELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFA 245

Query: 229 IRFGYI 234
                +
Sbjct: 246 YENHLV 251


>gi|260578669|ref|ZP_05846577.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603166|gb|EEW16435.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 200

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               E + +A    +  +   D     +   +    L+ERET   Q   +G +S  IA+ 
Sbjct: 104 DTPPEELADAIRRVHAGLRVIDPTLAQESLLTPDNPLSERETEVCQQLFEGKSSPAIAKA 163

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  ++ S   K  A NR +A   A   G+I
Sbjct: 164 LHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200


>gi|256391148|ref|YP_003112712.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357374|gb|ACU70871.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                   + +    +     S+    LT RE   + L   G ++EEIA +L ++  T  
Sbjct: 133 AATRALIARFLAQPSDTAPTVSAPLDALTARELEVVTLVATGLSNEEIAGQLFVTPLTAK 192

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  A  KL A +R Q +  A   G +
Sbjct: 193 THVNRAMTKLGARDRAQVVVIAYESGLV 220


>gi|194291367|ref|YP_002007274.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225271|emb|CAQ71213.1| Putative Transcriptional Regulator, LuxR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 918

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLANEVIIEA 149
           + T   +   + +          G    +      +           +   L    + + 
Sbjct: 774 QRTGDGAHALVVMGEALRFGAAEGF-VRIFADEGDDVRRLVADACARQAASLPAPYVEKL 832

Query: 150 HGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
             AC Q   +     +    A    LT +E   L L  +GY++  +AE+L +S  TV  +
Sbjct: 833 LQACGQAAAEPSGAGRPAPPALVEPLTPKEQKVLHLLAEGYSNVAMAERLFVSETTVRTH 892

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L + + KL A NR QA+A A + G +
Sbjct: 893 LRNISAKLHASNRTQAVAIARQLGLL 918


>gi|16766424|ref|NP_462039.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|168242933|ref|ZP_02667865.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447341|ref|YP_002047114.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|16421677|gb|AAL21998.1| putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194405645|gb|ACF65864.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205337769|gb|EDZ24533.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261248254|emb|CBG26091.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995294|gb|ACY90179.1| putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159678|emb|CBW19197.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914146|dbj|BAJ38120.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225798|gb|EFX50852.1| Putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131480|gb|ADX18910.1| putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332989989|gb|AEF08972.1| putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 227

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 18  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     ++  +     +                    I   +R G      +      + 
Sbjct: 70  SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +     LT +E   + +  +G +++ IA +L +
Sbjct: 129 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLESILTAKEREIVGMVCEGASNKLIARQLNI 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|288916721|ref|ZP_06411095.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288351795|gb|EFC85998.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 237

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191
                 ++     + A     +++  F    +  +       LT RE   LQL   G ++
Sbjct: 124 LVGAVRLVRLGDALLAPAITRRLVERFARTDRGTTLHRELSTLTPREVEVLQLLATGLSN 183

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            E+A +L LS  TV  ++     KL   +R QA+  A   G +
Sbjct: 184 AELAARLVLSEATVKTHVARIMAKLGLRDRAQAVVVAYETGLV 226


>gi|262376171|ref|ZP_06069401.1| two component transcriptional regulator [Acinetobacter lwoffii
           SH145]
 gi|262308772|gb|EEY89905.1| two component transcriptional regulator [Acinetobacter lwoffii
           SH145]
          Length = 229

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + ++    LT+RE   L L   G ++ EIAE+L +S +TV +++     KL    R +A+
Sbjct: 161 RPAADQETLTQREQEILSLVAQGLSNREIAEQLCVSRYTVESHIKHIYRKLSVSKRTKAV 220

Query: 226 AKAIRFGYI 234
           + A   G +
Sbjct: 221 STARHLGIL 229


>gi|229552033|ref|ZP_04440758.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314610|gb|EEN80583.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 203

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++ +  LTERE + L     G +S++IA  L LS  TV  YL +   KL   NRI+AI  
Sbjct: 136 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 195

Query: 228 AIRFGYI 234
           A R  ++
Sbjct: 196 AKRNKWL 202


>gi|188994767|ref|YP_001929019.1| probable DNA-binding response regulator LuxR family [Porphyromonas
           gingivalis ATCC 33277]
 gi|148524521|dbj|BAF63428.1| fimR [Porphyromonas gingivalis ATCC 33277]
 gi|188594447|dbj|BAG33422.1| probable DNA-binding response regulator LuxR family [Porphyromonas
           gingivalis ATCC 33277]
          Length = 227

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   +Q   DGY+++E AEK+ LS  TV  +  +   KL   N  + I  A++ G
Sbjct: 163 ELTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFSNAAELIRYAVKSG 222

Query: 233 YI 234
            +
Sbjct: 223 LV 224


>gi|17230043|ref|NP_486591.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75906706|ref|YP_321002.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17131643|dbj|BAB74250.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75700431|gb|ABA20107.1| transcriptional regulator, LuxR family [Anabaena variabilis ATCC
           29413]
          Length = 87

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   + L   G T++EIA KL +S  TV+ ++ +   K    NR+  +  A+++G 
Sbjct: 12  LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILDKTRTENRVALVRWALQWGK 71

Query: 234 IC 235
           +C
Sbjct: 72  VC 73


>gi|300788348|ref|YP_003768639.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797862|gb|ADJ48237.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 223

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   L     G ++ EIAE+L LS  TV  ++G    KL+  +R+QA+  A   
Sbjct: 158 ERLTERELEVLTKLARGLSNAEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDI 217

Query: 232 GYI 234
           G +
Sbjct: 218 GLV 220


>gi|269138467|ref|YP_003295167.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|267984127|gb|ACY83956.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|304558493|gb|ADM41157.1| Nitrate/nitrite response regulator protein [Edwardsiella tarda
           FL6-60]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    I   V         ++              E ++       +        
Sbjct: 78  LRNEGIDARIIILTVSDARSDVYALVDAGADGYLLKDSEPEALLAQIRQAAEGRSVFSES 137

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L    + +    +LTERE   LQ    G ++++IA +L +S  TV  ++ +   KL
Sbjct: 138 VLAYLSTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNLLRKL 197

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 198 NVRSRVAATVL 208


>gi|260362480|ref|ZP_05775413.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus K5030]
 gi|260894575|ref|ZP_05903071.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus Peru-466]
 gi|308094902|ref|ZP_05892254.2| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AN-5034]
 gi|308086485|gb|EFO36180.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus Peru-466]
 gi|308092124|gb|EFO41819.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AN-5034]
 gi|308113367|gb|EFO50907.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus K5030]
          Length = 210

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L         +   V         ++ +            + ++E     +Q        
Sbjct: 71  LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAYSQE 130

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L           +LT+RET  L+    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 131 VAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKL 190

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 191 QVPSRTAATVLYLER 205


>gi|163743111|ref|ZP_02150493.1| Possible LuxR family protein [Phaeobacter gallaeciensis 2.10]
 gi|161383528|gb|EDQ07915.1| Possible LuxR family protein [Phaeobacter gallaeciensis 2.10]
          Length = 205

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 11/184 (5%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           +     Y  +  D   +      D  +    S      W  ++      +          
Sbjct: 33  VFMKSTYSREWIDHYLVQRYFDLDPTIHFGKSATGFTTWGDLRRHYPTSNK---FFDDAA 89

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                 G    + +   +   +  +          + +A       +         R S 
Sbjct: 90  RFGLDCGNTLSIHV-DGQVSILSCSGPKWGDTERRLAKAALYSIHAV-------HHRESC 141

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              + E+    ++L   GY   EIAE+LG+ + TV     +A   ++A +  Q I+  I+
Sbjct: 142 RYTIKEKSKDVIRLMCTGYQDREIAERLGVKLETVRQRRQTAMQAVEATSTAQLISLVIK 201

Query: 231 FGYI 234
           +G I
Sbjct: 202 YGLI 205


>gi|311899603|dbj|BAJ32011.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 238

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 40/96 (41%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              +  +++     A                     LT RE   L+LA +G+ +EEIA  
Sbjct: 129 DPAVTRDLLGRLLAAPEPPPGPSAPPPGSVPGPLAALTVREREVLRLAAEGHPNEEIAAL 188

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L L+  TV  ++     KL A +R QA+A A R G 
Sbjct: 189 LHLAESTVKTHVKRILGKLGARDRSQAVAAAYRHGL 224


>gi|299069373|emb|CBJ40639.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CMR15]
          Length = 221

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 43/126 (34%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +   +       G     +   +++  +  +                   
Sbjct: 93  AALRDGARGYLVKNIEADTLVAGVRRAAAGEPVISESMTAKLVAHFRAPEKAAPAAPAAA 152

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S +A  LT RE   ++    G +++EIA  L ++  TV  ++ +   KL+  +R+Q    
Sbjct: 153 SVSADRLTPRERDIVRGLARGESNKEIARALDVAESTVKIHVQNILKKLNLTSRVQVAVY 212

Query: 228 AIRFGY 233
           A+  G 
Sbjct: 213 AVEHGL 218


>gi|68535964|ref|YP_250669.1| two-component system response regulator TcsR2 [Corynebacterium
           jeikeium K411]
 gi|68263563|emb|CAI37051.1| two-component system response regulator TcsR2 [Corynebacterium
           jeikeium K411]
          Length = 200

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               E + +A    +  +   D     +   +    L+ERET   Q   +G +S  IA+ 
Sbjct: 104 DTPPEELADAIRRVHAGLRVIDPTLAQESLLTPDNPLSERETEVCQQLFEGKSSPAIAKA 163

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  ++ S   K  A NR +A   A   G+I
Sbjct: 164 LHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200


>gi|313820373|gb|EFS58087.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313822823|gb|EFS60537.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|314925260|gb|EFS89091.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
          Length = 210

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + +   A G           L  +  S   +LT RE   L+ +
Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMARMRSPRTSLTARELDVLEAS 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +IAE L +S  TV  +L     KL   +R  A+AKA   G+I
Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVSSRSAAVAKARDIGFI 209


>gi|271962774|ref|YP_003336970.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505949|gb|ACZ84227.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 212

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 17/160 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138
           +          ++  R+ G       +A  V         VI                  
Sbjct: 53  LDVHMPGGGGQEVLRRVLGSGSSVRFLALSVSDAAEDVIGVIRGGARGYVTKTISGRELT 112

Query: 139 ----LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                +   + +     A + +                +LT+RE   L+L   GY  +EI
Sbjct: 113 DAIRRVADGDAVFSPRLAGFVLDAFASSEAPPIDPELDSLTQREREVLRLIARGYAYKEI 172

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L +SV TV  ++ S   KL   NR +    A     +
Sbjct: 173 AKELFISVKTVETHVSSVLRKLQLSNRHELSRWATARRLV 212


>gi|182438916|ref|YP_001826635.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779572|ref|ZP_08238837.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178467432|dbj|BAG21952.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659905|gb|EGE44751.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 229

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 2/197 (1%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           I+   +    +Q +    N   D   +   + E  G        +  + ++ +       
Sbjct: 28  IDVVGEAADGRQGVDVSRNQHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLT 87

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                             +G              V   +    L    +     A +   
Sbjct: 88  TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQ 145

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                    ++     LT RE+  L+L   G +++EIA +L L+  TV  ++G    KLD
Sbjct: 146 RPSGATRGGQALRRHGLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLD 205

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R QA+  A   G +
Sbjct: 206 LRDRAQAVIFAYESGLV 222


>gi|149376825|ref|ZP_01894582.1| putative transcriptional regulator [Marinobacter algicola DG893]
 gi|149358946|gb|EDM47413.1| putative transcriptional regulator [Marinobacter algicola DG893]
          Length = 898

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 43/71 (60%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K+++S A  +++RE   L+L   G ++++IA++L +S+HTV  +      KL+  +R Q
Sbjct: 828 MKEQASLAEPISDREQGVLELIAQGLSNQDIADRLHISLHTVKTHARRINAKLEVKSRTQ 887

Query: 224 AIAKAIRFGYI 234
           AI +A   G +
Sbjct: 888 AIVRARELGLL 898


>gi|333025294|ref|ZP_08453358.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745146|gb|EGJ75587.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 205

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   ++L   G ++ EIA +L LS  TV  ++G    KL   +R+Q +  A
Sbjct: 132 PELDRLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLA 191

Query: 229 IRFGYI 234
              G +
Sbjct: 192 YETGIV 197


>gi|297529073|ref|YP_003670348.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252325|gb|ADI25771.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 500

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 39/71 (54%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +L+ RE   L+L  +G ++ E A +L LS +TV  Y+ +   K++A NR +
Sbjct: 430 RSDLVQPMPHLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTE 489

Query: 224 AIAKAIRFGYI 234
           AI KAIR G I
Sbjct: 490 AIVKAIRDGII 500


>gi|188585327|ref|YP_001916872.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350014|gb|ACB84284.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 213

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
               E I++A     +V+         R +    LT RE   L L   G T+ EI E+L 
Sbjct: 118 AAEGEQIMDA-KTTEKVLEYMRNKNPNRENPTDILTNREMDILDLVAKGKTNSEIGEELH 176

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LS  TV   L     KLD  NR QA A 
Sbjct: 177 LSEKTVRNQLSRILNKLDLNNRTQAAAY 204


>gi|260905221|ref|ZP_05913543.1| two component system response regulator [Brevibacterium linens BL2]
          Length = 260

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 35/67 (52%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + A  +LT+RE   L L   G T+ EIA  L ++V TV  ++     KLD  +R QA+  
Sbjct: 188 AEALPDLTDREREILVLVARGQTNTEIAATLFIAVQTVKTHVSRILYKLDIRDRAQAVIA 247

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 248 AYESGLV 254


>gi|315127425|ref|YP_004069428.1| regulator in two-component regulatory system; LuxR
           [Pseudoalteromonas sp. SM9913]
 gi|315015939|gb|ADT69277.1| regulator in two-component regulatory system; LuxR
           [Pseudoalteromonas sp. SM9913]
          Length = 216

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++ ++   +LT ++   LQ   +G  +++IA +L +S  TV A++ +   KL   NR Q
Sbjct: 141 DREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQ 200

Query: 224 AIAKAIRFGY 233
           A+  A +   
Sbjct: 201 AVLIAAKLQL 210


>gi|313140461|ref|ZP_07802654.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313132971|gb|EFR50588.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 248

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LTERE   L     G +++EIA+KL +S+ T   ++     K++A +R+QA+  A
Sbjct: 183 PELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFA 242

Query: 229 IRFGYI 234
              G +
Sbjct: 243 YDNGLV 248


>gi|311064578|ref|YP_003971303.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866897|gb|ADP36266.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 248

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LTERE   L     G +++EIA+KL +S+ T   ++     K++A +R+QA+  A
Sbjct: 183 PELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFA 242

Query: 229 IRFGYI 234
              G +
Sbjct: 243 YDNGLV 248


>gi|238792074|ref|ZP_04635710.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
 gi|238728705|gb|EEQ20223.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
          Length = 202

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L    +    I   V         +I              E+++E               
Sbjct: 65  LRHDGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRRAAHGENVFSNE 124

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L    +  +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 125 VAQYLSSRHEEINPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 184

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 185 NVRSRVAATIM 195


>gi|254390921|ref|ZP_05006131.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704618|gb|EDY50430.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 242

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +     LT RE    +L   G  +  IA ++ +S  TV  ++ +   KL   +R
Sbjct: 164 AAGTGPTGVPDGLTPREREVWRLIAAGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDR 223

Query: 222 IQAIAKAIRFGYI 234
            QA+  A   G +
Sbjct: 224 AQAVIAAYEAGLV 236


>gi|315505229|ref|YP_004084116.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315411848|gb|ADU09965.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 212

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 45/109 (41%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V   A G      T    L  +  +    LT RET  L L 
Sbjct: 102 AGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALV 161

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++  I  +L L+  TV ++L     KL   +R  A+A A   G I
Sbjct: 162 ADGLSNHSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210


>gi|111220997|ref|YP_711791.1| putative regulatory protein [Frankia alni ACN14a]
 gi|111148529|emb|CAJ60200.1| Putative regulatory protein [Frankia alni ACN14a]
          Length = 273

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 12/230 (5%)

Query: 9   KKSSSLQELSP-RLHLIQNRIKARNFALYTINSALDF--PRRQQLICELHNYDLDSGDIP 65
           +++SSL       L  +   +  R+ A +  +S        R               +  
Sbjct: 35  ERASSLASFRELALDGMARHLGYRHSAFFLGSSIETAFQDARPTGRGLALRLAGPYMERY 94

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV--RLEGGLLPFAGIAFPVR 123
             L      + L       L     ++ +  V E         R        A +   + 
Sbjct: 95  RELEALSNPESLRSVRERGL----ATLDDLGVPERPEVRMRLERFLRAHGIHAKLLVRLF 150

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180
              +    +                      + + + L  + +       A  L+ RE  
Sbjct: 151 GPSNVGALISLLDSRPGAFGPRDRAVGAVLGRHLGNLLRFYIRTDPGPSVAGRLSARERD 210

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            ++L  +G ++ ++AE L +S+ TV  +L  A V     NR Q      R
Sbjct: 211 VVRLVAEGRSNRQVAEALCISIDTVKHHLTHALVATGCSNRTQLAIAWQR 260


>gi|285808415|gb|ADC35942.1| two component transcriptional regulator LuxR family [uncultured
           bacterium 70]
          Length = 210

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 33/65 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL   G +++EIAE+LGLSV+TV  +  +    L      + +  AI
Sbjct: 143 RTHGLTPRELEVLQLICSGMSNKEIAEELGLSVNTVAVHRANIMNALGLHKTAELVVYAI 202

Query: 230 RFGYI 234
             G +
Sbjct: 203 SNGLV 207


>gi|221209585|ref|ZP_03582566.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
 gi|221170273|gb|EEE02739.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
          Length = 298

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 67/244 (27%), Gaps = 18/244 (7%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  A +      L                
Sbjct: 57  TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PSTYRGDYV 114

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL----------SVRLEGGLLPFA 116
                  D          +PI+W   Q     +                ++        +
Sbjct: 115 RHNHHDVDPRTLGARVCNMPIVWDLQQLRRDHQPRDDDASDAPAALDGFLQTMQDDGMCS 174

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSA 170
           GI + + +   +   ++ FT+                 + G           +   R  A
Sbjct: 175 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATVEQALSIGLSVHKFASPQLIATSRERA 234

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT  E   L    +G + +EI  +L  S H V+ +L     +    NR+Q      +
Sbjct: 235 VNGLTPFEQELLIGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRVQLTYLTSK 294

Query: 231 FGYI 234
              I
Sbjct: 295 LELI 298


>gi|170077282|ref|YP_001733920.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002]
 gi|169884951|gb|ACA98664.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002]
          Length = 363

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L++RE   L L   G    +IA++L +S  TV  +L     KL A NR QAI +A + 
Sbjct: 301 ESLSQRERQVLALLTKGLRDRDIAQQLHISESTVKFHLNRTLSKLQAKNRYQAIYQATKQ 360

Query: 232 GYI 234
           G I
Sbjct: 361 GLI 363


>gi|78061780|ref|YP_371688.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969665|gb|ABB11044.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 246

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 61/233 (26%), Gaps = 24/233 (10%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72
             +    L    +   A  FA  +        +  +    EL                  
Sbjct: 12  AADWQRALRACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRM 68

Query: 73  GDDFL-FHFNSGLLPII----------------WQS-IQEETVIESSGQLSVRLEGGLLP 114
            D        +G   ++                W   +Q   V +            +  
Sbjct: 69  LDPLHPSRCAAGERAVVTLASQLPDERRDASAYWTRFLQRHDVADVVEIWLRDAGRTVGA 128

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAAR 172
           F+ + F                 F     + +          ++  L +     R S   
Sbjct: 129 FSLLRFGAGDTGGGAAGNSTAGRFAPGEIDALARLQPVAEAALSPLLRVRSGIHRISCEE 188

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            LT RE    +L  DG +++EIA  L L   TV  +L     KL   NR + +
Sbjct: 189 RLTYREEQIARLVRDGRSNKEIARDLALGQPTVKTHLMRMYRKLGVSNRTELV 241


>gi|258539446|ref|YP_003173945.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus Lc 705]
 gi|257151122|emb|CAR90094.1| Two-component response regulator, LuxR family [Lactobacillus
           rhamnosus Lc 705]
          Length = 202

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++ +  LTERE + L     G +S++IA  L LS  TV  YL +   KL   NRI+AI  
Sbjct: 135 TAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEM 194

Query: 228 AIRFGYI 234
           A R  ++
Sbjct: 195 AKRNKWL 201


>gi|196229558|ref|ZP_03128423.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226790|gb|EDY21295.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 210

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 7/149 (4%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148
                  +    +  L         + F    G       +            A E ++ 
Sbjct: 59  DLRLPGANGTAATADLRREWPDARVLMFTTFDGEEDIYRAMQAGARGYLLKSAAREELLS 118

Query: 149 AHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           A  A             +R +   AA ++++RE   LQL   G  ++EIA  LG+S  TV
Sbjct: 119 AIRAVAAGERHLSAALAQRLAGRVAAPDVSDREREVLQLIARGKANKEIAAALGISEETV 178

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +  +  VK+   +R QA ++ IR G I
Sbjct: 179 KRHASNLFVKMGVADRAQATSEGIRRGLI 207


>gi|134103124|ref|YP_001108785.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003933|ref|ZP_06561906.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915747|emb|CAM05860.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 223

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 49/162 (30%), Gaps = 19/162 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +          ++  ++ G       +A  V         VI           ++   + 
Sbjct: 62  LDVHMPDGGGAEVLRQVRGKQPDVVFLALSVSDAAEDVIAVIRGGARGYVTKTISGRELA 121

Query: 148 EAH------------GACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSE 192
           +A                  V+  F E              LT RE   L+L   GY  +
Sbjct: 122 DAVCRVAAGDPVFSPRLAGFVLDAFAEGPNSAPVGDPELDLLTPRERDVLRLLARGYAYK 181

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L +SV TV  ++ S   K    NR +    A     +
Sbjct: 182 EIASELFISVKTVETHVSSVLRKTQLSNRYELSRWATDRRLV 223


>gi|84496768|ref|ZP_00995622.1| putative respose regulatory protein [Janibacter sp. HTCC2649]
 gi|84383536|gb|EAP99417.1| putative respose regulatory protein [Janibacter sp. HTCC2649]
          Length = 217

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 62/170 (36%), Gaps = 26/170 (15%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148
                     S   +   L  G      G+   VR        +I T+          +E
Sbjct: 48  DEALALVGSTSPDVVLSDLRLGAGLDGVGVTRAVRATHPDVAVLIITTFDHDADIVRAVE 107

Query: 149 AHGACYQVITDFL------------------------ELFKKRSSAARNLTERETSCLQL 184
           A GA   ++ D L                         + +      R L+ERE   L L
Sbjct: 108 A-GAAGYLLKDALPDEIIAAIRAAAVGETVLSAQLTQRVVETMRVGQRPLSEREREVLVL 166

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G+G +++EIA++L +S  TV  +L     KL+A +R  A+A A R G I
Sbjct: 167 VGEGLSNDEIAKQLFISRATVKTHLRHLFGKLEADSRTGAVATARRLGLI 216


>gi|304409402|ref|ZP_07391022.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307303760|ref|ZP_07583513.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304351920|gb|EFM16318.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306912658|gb|EFN43081.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 216

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 162 ELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++ + + + +        L+ERE   L     G++++EIA  + L+  TV  ++ +   K
Sbjct: 138 QMSEPKPAPSVGVTRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTK 197

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           LD  +R QA+ K ++   I
Sbjct: 198 LDCRDRTQAVLKGLQLALI 216


>gi|269962779|ref|ZP_06177120.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832469|gb|EEZ86587.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 218

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 150 HGACYQVITDFLELFKKRSS-----AARN--LTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +    +++   L  +K + S      A    LT RE   LQ+  DG ++ EIA+ L +S 
Sbjct: 129 NWLSRRLLEQLLTYYKGKESTYSIEPAEEVELTRREVQVLQMLKDGGSNMEIADSLFISE 188

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           HT+ ++L +   K++  NR QA + A R 
Sbjct: 189 HTIKSHLYNIFRKIEVKNRTQATSWAKRN 217


>gi|291299414|ref|YP_003510692.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568634|gb|ADD41599.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIA 195
            ++A    + A     ++I +F++  + R    +   +LT RET  L+L  +G ++ E+A
Sbjct: 120 RVVAAGEALLAPTVTRRLIGEFVQSKQPRPVADARLASLTPRETEVLRLVAEGLSNPELA 179

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L +S  TV  ++     KL   +R QA+  A   G +
Sbjct: 180 ARLTVSEETVKTHVSRVLHKLGLRDRTQAVVAAYESGLV 218


>gi|186681434|ref|YP_001864630.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463886|gb|ACC79687.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 239

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 44/80 (55%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+ + ++   ++S  +  LT RE   L+L   G  + EIA++L L+V TV  ++     
Sbjct: 159 RVLIEGIDPDVEKSIVSYPLTHREMDVLELIVAGCDNAEIAKRLYLTVGTVKTHVRGILN 218

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +R QA  +A+R G +
Sbjct: 219 KLCVADRTQAAVRALRAGLV 238


>gi|326776667|ref|ZP_08235932.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657000|gb|EGE41846.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 225

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173
           L    +G+++  +    LA+ V + A G          ++I +F           +    
Sbjct: 99  LRAGASGFLLKDASADELAHAVRVVAAGDALLSPNITKRLIVEFSRTAGAPRPPLKARVK 158

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERET  L L   G ++ EI+ +L ++  TV  ++G   VKL   +R QA   A   G
Sbjct: 159 ELTERETEVLTLIAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESG 218

Query: 233 YI 234
            +
Sbjct: 219 LV 220


>gi|294101416|ref|YP_003553274.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293616396|gb|ADE56550.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 211

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERE 178
             L     G+++ TS       ++I            + ++   +   R     +L+ RE
Sbjct: 93  ASLRAGARGFILKTST----PQDLIRAIQTVVQGGLYLDSEVATVVGDRELVPESLSARE 148

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L LA  G +S+E+A +L +S  TV  +L S   KL A N+ +A+  A+++G +
Sbjct: 149 REVLVLASKGLSSKEVAAELFISERTVQTHLASIYDKLGARNKTEALLLALKYGVV 204


>gi|269836639|ref|YP_003318867.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785902|gb|ACZ38045.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 237

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 152 ACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +++ +F  + + +       LTERE   L+L   G +++EIA +L L+  TV   L 
Sbjct: 150 LATKLLNEFRRISEFREEETVAGLTEREIQLLRLVASGMSNKEIAAELSLAESTVKNRLS 209

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KLD  +R QA   A+  G I
Sbjct: 210 LLFEKLDVKDRTQAAIYALSHGLI 233


>gi|269957384|ref|YP_003327173.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306065|gb|ACZ31615.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 234

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 42/96 (43%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +  ++   +  H                  +A   LT+RE   L+L   G ++ EIA  L
Sbjct: 135 IAPSSTRRLLEHLVTALPTPAPDTPPSPAHAALATLTDREREVLELMARGRSNTEIAADL 194

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  TV  ++G    KLDA +R+QA+  A   G +
Sbjct: 195 FVAEATVKTHVGRILAKLDARDRVQAVVLAYETGVV 230


>gi|269794179|ref|YP_003313634.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269096364|gb|ACZ20800.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 236

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++  +            +  + L +   ++SA  +LTERE   L L   G  ++
Sbjct: 132 VHSGDAVIAPSTTRRLLDRLVTTLPEEQL-VDSGQASAVDSLTEREREVLVLMARGRANQ 190

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  L ++  T+  ++G    KL A +R+QA+  A   G +
Sbjct: 191 EIASDLFVAEATIKTHVGRILSKLGARDRVQAVVTAYETGLV 232


>gi|253575646|ref|ZP_04852982.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844984|gb|EES72996.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 74

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L     T+ +IA +L +S  TV  ++ +   KL+   R QA+ + I+ G
Sbjct: 12  LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRAQAVVELIKLG 70


>gi|311740351|ref|ZP_07714180.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304535|gb|EFQ80609.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 223

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  +   +LT RE   LQL   G ++ +I + L LS  TV ++L     KL   +R
Sbjct: 151 RLMTRVRTPRTSLTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSR 210

Query: 222 IQAIAKAIRFGYI 234
             A+A A   G +
Sbjct: 211 TSAVAAAREQGVL 223


>gi|16761174|ref|NP_456791.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141132|ref|NP_804474.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412856|ref|YP_149931.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|168229605|ref|ZP_02654663.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236420|ref|ZP_02661478.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168818030|ref|ZP_02830030.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194471476|ref|ZP_03077460.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736026|ref|YP_002115321.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197250575|ref|YP_002147204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197361787|ref|YP_002141423.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213028722|ref|ZP_03343169.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213051724|ref|ZP_03344602.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213418242|ref|ZP_03351308.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426294|ref|ZP_03359044.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213622209|ref|ZP_03374992.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213649802|ref|ZP_03379855.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289812587|ref|ZP_06543216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289824610|ref|ZP_06544153.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25298773|pir||AD0787 nitrate/nitrite response regulator protein NarP STY2472 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503473|emb|CAD07478.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136758|gb|AAO68323.1| nitrate/nitrite response regulator protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127113|gb|AAV76619.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194457840|gb|EDX46679.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711528|gb|ACF90749.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197093263|emb|CAR58709.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214278|gb|ACH51675.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197290466|gb|EDY29821.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|205335871|gb|EDZ22635.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344893|gb|EDZ31657.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|322615257|gb|EFY12179.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617847|gb|EFY14743.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624558|gb|EFY21389.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626991|gb|EFY23787.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634176|gb|EFY30912.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635631|gb|EFY32341.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640233|gb|EFY36897.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646344|gb|EFY42856.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649311|gb|EFY45747.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656431|gb|EFY52720.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661159|gb|EFY57386.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665703|gb|EFY61887.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667229|gb|EFY63396.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671234|gb|EFY67362.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675125|gb|EFY71202.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680733|gb|EFY76768.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686908|gb|EFY82885.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192673|gb|EFZ77900.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198895|gb|EFZ83994.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323205094|gb|EFZ90072.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208137|gb|EFZ93081.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211120|gb|EFZ95970.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215837|gb|EGA00580.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221856|gb|EGA06256.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223671|gb|EGA07980.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231283|gb|EGA15398.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233716|gb|EGA17808.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237788|gb|EGA21848.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245769|gb|EGA29763.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246491|gb|EGA30470.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252610|gb|EGA36449.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255334|gb|EGA39107.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259569|gb|EGA43204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266066|gb|EGA49559.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272760|gb|EGA56164.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 215

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|84496167|ref|ZP_00995021.1| putative two-component system regulator [Janibacter sp. HTCC2649]
 gi|84382935|gb|EAP98816.1| putative two-component system regulator [Janibacter sp. HTCC2649]
          Length = 232

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 17/224 (7%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             +    L  ++  +      +    +      R+           D   +   L    G
Sbjct: 13  ADDHPLWLGALERDLAQAGLDVVATAADGPSTVRRTRAT-----RPDVLVLDLNLPGMRG 67

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D+           ++        ++ +SG+    L        G              V+
Sbjct: 68  DEVCRALGDLETRVL--------ILSASGEQLDVLAAIKAGATGYLVKSASSEDIVAAVL 119

Query: 134 FTSEFLMLANEVIIEAHGACYQVIT----DFLELFKKRSSAARNLTERETSCLQLAGDGY 189
            T+    +    +       ++ +     + +   +        LT+RET  L+L   G 
Sbjct: 120 ATARGEAVFTSGLAGLVLGEFRRMAADDGEAVAAPQTADRPIPELTDRETEVLRLVATGM 179

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + +EIA +L LS  TV  ++ +   KL   NR++ +  A+  G 
Sbjct: 180 SYKEIAAELFLSHRTVQNHVQNTLGKLHLHNRVELVRFALARGL 223


>gi|332974494|gb|EGK11416.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 224

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            + K +     +LT RE   L+L G   T+++IA+ L + + TV  ++ +   KL   +R
Sbjct: 137 RVRKPQPLPHEDLTIREGEVLRLLGQAKTNQQIADILMIGIKTVKTHVSNILSKLGLEDR 196

Query: 222 IQAIAKAIRFGY 233
            QA   A++ G 
Sbjct: 197 TQAAVYAVKHGL 208


>gi|268316568|ref|YP_003290287.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262334102|gb|ACY47899.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 211

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 151 GACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                V    LELF+ + + A   + LT RE   L L   G ++ EIAE+L LS+ TV  
Sbjct: 124 WMSAGVARRALELFRHQLAPAAALQQLTPREQEVLHLLARGLSNAEIAERLYLSIETVRT 183

Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231
           ++     KL A NR +A+++ ++ 
Sbjct: 184 HIRHIYRKLQARNRAEAVSRLLQN 207


>gi|220914644|ref|YP_002489953.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219861522|gb|ACL41864.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 230

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RET  L+   +G ++ EIA +  LS  TV  ++     KL   +R+QA+  A   G 
Sbjct: 163 LTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETGL 222

Query: 234 I 234
           +
Sbjct: 223 V 223


>gi|126649643|ref|ZP_01721884.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593968|gb|EAZ87891.1| two-component response regulator [Bacillus sp. B14905]
          Length = 203

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE+  L L  +G T++EIA +L LS  TV  Y+ +   KL+  NRI+AIA+    G
Sbjct: 141 PLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKG 200

Query: 233 Y 233
           +
Sbjct: 201 W 201


>gi|330811658|ref|YP_004356120.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379766|gb|AEA71116.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 849

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEK 197
            A + + E      +++       +    A+     L+ RE   L+L   G+++++IAE+
Sbjct: 752 RAQQALCELRLRQPELVRWAQSAEQVEPPASAEDTLLSHRELEVLELIAQGHSNQQIAER 811

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           L +S+HTV  +      KL    R QA+AKA   G
Sbjct: 812 LFISLHTVKTHARRIHSKLGVQRRTQAVAKAKVMG 846


>gi|158336971|ref|YP_001518146.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307212|gb|ABW28829.1| transcriptional regulator, LuxR family [Acaryochloris marina
           MBIC11017]
          Length = 87

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 38/64 (59%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   ++L   G  +EEI+++L +S  TV+ ++ +   K D  NR+  +  A+++
Sbjct: 10  HQLSERELQVIELVASGLKNEEISQRLDISKRTVDNHISNILTKTDTDNRVALVRWALQW 69

Query: 232 GYIC 235
           G +C
Sbjct: 70  GKVC 73


>gi|116691570|ref|YP_837103.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649570|gb|ABK10210.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
          Length = 510

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 89  WQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFTSEFLMLA 142
           W  I+           + V++                  +         ++  S+     
Sbjct: 329 WSRIEGRLAGDGHVRNVDVQIRTRDGDVRDCVVSADPVAIHGRDCLLVALLDISDRKRTE 388

Query: 143 NEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTS 191
            E+       + +A      +I     + +  +  A      LT RE     L   G   
Sbjct: 389 MELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLAD 448

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EIA +LGL+ +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 449 KEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|332877914|ref|ZP_08445652.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684209|gb|EGJ57068.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 205

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSA---------ARNLTERETSCLQLAGDGYTSEEI 194
            ++                L +                 L+ RE   L L   G T++EI
Sbjct: 101 SMVRALLQLQQHAHAHGRHLPQNMPRPYMTNTSPGDPNGLSTREIEVLTLIVRGLTNKEI 160

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L +S  TV ++  +   KL+  +       A+  GYI
Sbjct: 161 ADRLCISTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGYI 200


>gi|251771224|gb|EES51805.1| two component transcriptional regulator, LuxR family
           [Leptospirillum ferrodiazotrophum]
          Length = 219

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                  +    +      L+ RET  L+L  +G ++ +IA  LG+SV TV A++ S  V
Sbjct: 140 AHLAIRRILSSPAPETETPLSARETEVLRLLAEGQSNRDIAVALGISVSTVKAHIQSILV 199

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A  R  A  KA R G+I
Sbjct: 200 KLSAATRADAAVKAFRKGWI 219


>gi|226366081|ref|YP_002783864.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244571|dbj|BAH54919.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               SS   +LT+RE   + L  +G T+ EI  +L LS  T   ++    +KL A +R Q
Sbjct: 146 RPPHSSRLDDLTDREREVMTLIAEGLTNAEIGSRLFLSPATARTHVSRILLKLGARDRTQ 205

Query: 224 AIAKAIRFGYI 234
            +  A  +G +
Sbjct: 206 LVVMAYEWGLV 216


>gi|111020952|ref|YP_703924.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110820482|gb|ABG95766.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 207

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 46/109 (42%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   + G          +L  +    A +L+ RE   L L 
Sbjct: 97  AGAAGYLLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTRVRRPATSLSPREIQVLTLV 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EI ++L LS  TV ++L     KL   +R  AIA+A   G I
Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAIARARELGTI 205


>gi|327330788|gb|EGE72534.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
          Length = 83

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A A  
Sbjct: 12  AEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYE 71

Query: 231 FGYI 234
            G I
Sbjct: 72  SGLI 75


>gi|255325940|ref|ZP_05367030.1| NarL family two-component response regulator [Rothia mucilaginosa
           ATCC 25296]
 gi|255296955|gb|EET76282.1| NarL family two-component response regulator [Rothia mucilaginosa
           ATCC 25296]
          Length = 287

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 1/141 (0%)

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-A 152
           +  +  S+ +  +     +L       P              +   +     I   H   
Sbjct: 145 DAVIAPSATRRLLEQMIPVLDSPAPVVPTAPAAESVPATPPAAGSELPKATFIPAGHASP 204

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                                L+ RE   L L   G ++ EI  +L LS  TV  ++   
Sbjct: 205 ANSSYQSEPAQDYPHRELIEQLSPREFEVLGLIARGLSNAEITRELVLSEATVKTHVSHV 264

Query: 213 TVKLDAVNRIQAIAKAIRFGY 233
             KL A +R+QA+  A   G 
Sbjct: 265 LAKLGARDRVQAVIMAYEAGI 285


>gi|148998533|ref|ZP_01825974.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|168576597|ref|ZP_02722463.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|307068610|ref|YP_003877576.1| CheY-like receiver/HTH DNA-binding domain-containing response
           regulator [Streptococcus pneumoniae AP200]
 gi|147755726|gb|EDK62772.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|183577636|gb|EDT98164.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|306410147|gb|ADM85574.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Streptococcus pneumoniae AP200]
          Length = 199

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|159898519|ref|YP_001544766.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus
            ATCC 23779]
 gi|159891558|gb|ABX04638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Herpetosiphon aurantiacus ATCC 23779]
          Length = 1019

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 41/63 (65%)

Query: 172  RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              L+ERE + ++L   G++++EIA++L ++++T+  +L +   KL   +R QAIA+A R 
Sbjct: 954  EPLSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIYSKLAVTSRTQAIARARRL 1013

Query: 232  GYI 234
              I
Sbjct: 1014 NLI 1016


>gi|312868682|ref|ZP_07728875.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3]
 gi|311095796|gb|EFQ54047.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3]
          Length = 210

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE     L   GY++ EI+EKL +S  TV A+  + + KL   +R++ +  AI    
Sbjct: 148 LSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVELVRYAIHHHL 207

Query: 234 I 234
           I
Sbjct: 208 I 208


>gi|148990003|ref|ZP_01821278.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|182684936|ref|YP_001836683.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|225855491|ref|YP_002737003.1| response regulator [Streptococcus pneumoniae JJA]
 gi|303254075|ref|ZP_07340190.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|303260376|ref|ZP_07346346.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262524|ref|ZP_07348466.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265155|ref|ZP_07351068.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|303265983|ref|ZP_07351878.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303268085|ref|ZP_07353886.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|147924663|gb|EDK75749.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|182630270|gb|ACB91218.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|225723110|gb|ACO18963.1| response regulator [Streptococcus pneumoniae JJA]
 gi|301802678|emb|CBW35444.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598908|gb|EFL65939.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|302636424|gb|EFL66917.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638542|gb|EFL69007.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302642445|gb|EFL72791.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302644424|gb|EFL74676.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|302645372|gb|EFL75606.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
          Length = 199

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|260900449|ref|ZP_05908844.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ4037]
 gi|308106954|gb|EFO44494.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ4037]
 gi|328470949|gb|EGF41860.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           10329]
          Length = 210

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L         +   V         ++ +            + ++E     +Q        
Sbjct: 71  LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAYSQE 130

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L           +LT+RET  L+    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 131 VAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKL 190

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 191 QVPSRTAATVLYLER 205


>gi|153837120|ref|ZP_01989787.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ3810]
 gi|149749537|gb|EDM60283.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ3810]
          Length = 212

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L         +   V         ++ +            + ++E     +Q        
Sbjct: 73  LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAYSQE 132

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L           +LT+RET  L+    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 133 VAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKL 192

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 193 QVPSRTAATVLYLER 207


>gi|28901050|ref|NP_800705.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28809563|dbj|BAC62538.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 208

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L         +   V         ++ +            + ++E     +Q        
Sbjct: 69  LRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAYSQE 128

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L           +LT+RET  L+    G+ +++IA++L +S  TV  ++ S   KL
Sbjct: 129 VAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKL 188

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 189 QVPSRTAATVLYLER 203


>gi|170736431|ref|YP_001777691.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254249144|ref|ZP_04942464.1| PAS/PAC domain [Burkholderia cenocepacia PC184]
 gi|124875645|gb|EAY65635.1| PAS/PAC domain [Burkholderia cenocepacia PC184]
 gi|169818619|gb|ACA93201.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 510

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 89  WQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFTSEFLMLA 142
           W  I+           + V++                  +         ++  S+     
Sbjct: 329 WSRIEGRLAGDGHVRNVDVQIRTRDGDVRDCVVSADPVAIHGRDCLLVALLDISDRKRTE 388

Query: 143 NEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTS 191
            E+       + +A      +I     + +  +  A      LT RE     L   G   
Sbjct: 389 MELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLAD 448

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EIA +LGL+ +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 449 KEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 233

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 37/99 (37%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                    E+  E      Q+      L         +LT RE S L L  +G  ++EI
Sbjct: 133 AGSDSAKLEEIAQEIRELKEQLGQQQNNLTTTPPPIKIDLTPREQSVLDLVAEGLMNKEI 192

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L  SV  V  Y+     K    +R + +  A++ G 
Sbjct: 193 AARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 231


>gi|29830210|ref|NP_824844.1| erythropoiesis-stimulating protein [Streptomyces avermitilis
           MA-4680]
 gi|15824087|dbj|BAB69254.1| erythropoiesis-stimulating protein homolog [Streptomyces
           avermitilis]
 gi|29607321|dbj|BAC71379.1| putative erythropoiesis-stimulating protein [Streptomyces
           avermitilis MA-4680]
          Length = 337

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 11/227 (4%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   + ++  R+                +  A   P+ +           D      +
Sbjct: 116 VERLVGIDDIRSRIEEFTQECGTE-----LLTFATGGPQSEASRQASRPLCEDLAKRGVV 170

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +   Y D       +    +           +     S+     L        P+     
Sbjct: 171 MRSIYLDSVH----NDPATVEHLRWLHLHGDQVRTTASLPSRMLLFDRTHAVLPIDPDAS 226

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
             G ++     ++     + +         +      + R      LT +E + L+L G+
Sbjct: 227 AAGALVLRGAGVIATLGDLFDRVWESAIPFSGGRPQPRDRG--EEELTGQEQAVLRLLGE 284

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T E +A KLG+SV T          +L A +R QA  +A + G++
Sbjct: 285 GLTDEVVARKLGVSVRTGRRITAELMGRLGARSRFQAGLRAAQLGWL 331


>gi|87306600|ref|ZP_01088747.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
 gi|87290779|gb|EAQ82666.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
          Length = 210

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+    G ++ EI   L +S+ TV  ++ +   K+D  +R QA   A+R G
Sbjct: 149 PLTNREMQVLRHLALGLSNREIGRSLTISIETVKEHVQNILRKIDVTDRTQAAVWAVRRG 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|15599269|ref|NP_252763.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116052110|ref|YP_789046.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254236962|ref|ZP_04930285.1| hypothetical protein PACG_02986 [Pseudomonas aeruginosa C3719]
 gi|296387369|ref|ZP_06876868.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|9950272|gb|AAG07461.1|AE004823_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115587331|gb|ABJ13346.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168893|gb|EAZ54404.1| hypothetical protein PACG_02986 [Pseudomonas aeruginosa C3719]
          Length = 222

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 14/219 (6%)

Query: 16  ELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +L PR +      + A     Y I+        +    +L                   D
Sbjct: 8   DLGPRCMQAFTQVVPASLCVFYRID-----EDCRAHDFQLLRMPAGMHRDYLRH-YRDYD 61

Query: 75  DFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                H  +   P++               L             +             + 
Sbjct: 62  PLQPRHCLASASPVVPLRQGIARQPAEDSALYQGFLRRHGICDVVEVLAHAHQRPVAALS 121

Query: 134 FTSE-----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +     F       +   HG   ++           +   + LT RE     L  DG
Sbjct: 122 LLRDARLGAFSDQELRQLRALHGL-MELAAQACATPTASAERLQGLTPREREIALLLRDG 180

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +++ +A+ LGL + TV  +L +   K  A +R + + +
Sbjct: 181 VSNKCLAQCLGLGLPTVKTHLLNLFRKTGARSRTELVKR 219


>gi|303256175|ref|ZP_07342191.1| two component transcriptional regulator, LuxR family
           [Burkholderiales bacterium 1_1_47]
 gi|331001230|ref|ZP_08324856.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
 gi|302860904|gb|EFL83979.1| two component transcriptional regulator, LuxR family
           [Burkholderiales bacterium 1_1_47]
 gi|329568957|gb|EGG50753.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
          Length = 228

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
              S     A  V+++A      V    + +   R + A  L+ RET  L L   G +  
Sbjct: 125 AHGSPMSPTAARVLVDALRRKPTV-KPVVSVAASRPAVANPLSPRETEVLNLLARGMSFA 183

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EI+  L +S HTV A++     KL   +R +A+ +A + G +
Sbjct: 184 EISSVLNISCHTVTAHIKKIYRKLQVHSRGEAVYEAAQLGIL 225


>gi|299534498|ref|ZP_07047831.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298730126|gb|EFI70668.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 203

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE+  L L  +G T++EIA +L LS  TV  Y+ +   KL+  NRI+AIA+    G
Sbjct: 141 PLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKG 200

Query: 233 Y 233
           +
Sbjct: 201 W 201


>gi|297197233|ref|ZP_06914630.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717281|gb|EDY61315.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLA 185
               +  +   + A E ++        +    L        A      L+ERE   L L 
Sbjct: 110 RPAELLDAIRTVAAGESLLSPGPTSRLIARFLLAPNTAPKPALGGPSELSERERQVLALV 169

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA+ LGLS  T   ++     KL A +R Q +  A   G +
Sbjct: 170 ARGLNNAEIADALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 218


>gi|86138888|ref|ZP_01057460.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. MED193]
 gi|85824535|gb|EAQ44738.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. MED193]
          Length = 251

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 12/229 (5%)

Query: 11  SSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNIL 68
           + SL+EL    +  +                  +           L N+D          
Sbjct: 13  AKSLEELWHTHVMKMAE-YGFDRLIYGYTRFKTETSLGDPDDFVILTNHDQKYISGFLHQ 71

Query: 69  IETYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   +           W   + + EE  +    +  +     +   AG        
Sbjct: 72  GLYRQAPMVLWALENEGACSWKKIREMLEEGQLSPGSKQVIEFNERMQLNAGYTISFFSA 131

Query: 126 FHKN-GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELF---KKRSSAARNLTERET 179
             +  G +           ++  + + HG    ++ + + L           R+LT R+ 
Sbjct: 132 SKRYKGAISLAGRSGSTQADLDGMWQEHGEDIILMNNMVHLKILTLPYDPPNRSLTNRQR 191

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             L+  GDG T+++IA  +GL+  T+  +L  A   L      QA+ KA
Sbjct: 192 EALEWVGDGKTTQDIALLMGLTPATIEKHLRLARSSLSVETTAQAVLKA 240


>gi|269794993|ref|YP_003314448.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097178|gb|ACZ21614.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 258

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 18/162 (11%)

Query: 91  SIQEETVIESSGQLSVRLEG--GLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANE 144
            + E   +E++ Q+           P   I         +    I               
Sbjct: 88  RMPELDGVEATRQIFAPARAASRAGPVRVIVLTTFDLDDRAAAAIRYGASGFLLKDATPA 147

Query: 145 VIIEAHGACYQ------------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           ++ +A    +             ++       +       +LT +E   L     G  + 
Sbjct: 148 MLRDAIRTVHAGNAVLAPDDLSTLLDGRFRARRPSPPGLEDLTPKEREVLAAVAAGLNNA 207

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +  +S  TV  ++G+   KL   +R+Q +  A   G +
Sbjct: 208 EIARRAFVSESTVKTHVGAVLRKLGLRDRVQVVVLAHEHGLV 249


>gi|261418220|ref|YP_003251902.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319767820|ref|YP_004133321.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374677|gb|ACX77420.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317112686|gb|ADU95178.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 500

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 39/71 (54%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +L+ RE   L+L  +G ++ E A +L LS +TV  Y+ +   K++A NR +
Sbjct: 430 RSDLVQPMPHLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTE 489

Query: 224 AIAKAIRFGYI 234
           AI KAIR G I
Sbjct: 490 AIVKAIRDGII 500


>gi|182436043|ref|YP_001823762.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464559|dbj|BAG19079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173
           L    +G+++  +    LA+ V + A G          ++I +F           +    
Sbjct: 99  LRAGASGFLLKDASADELAHAVRVVAAGDALLSPNITKRLIVEFSRTAGAPRPPLKARVG 158

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERET  L L   G ++ EI+ +L ++  TV  ++G   VKL   +R QA   A   G
Sbjct: 159 ELTERETEVLTLIAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESG 218

Query: 233 YI 234
            +
Sbjct: 219 LV 220


>gi|126729492|ref|ZP_01745306.1| Response regulator [Sagittula stellata E-37]
 gi|126710482|gb|EBA09534.1| Response regulator [Sagittula stellata E-37]
          Length = 218

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           +I+       + + D LE     +     LT RE   L L  +G ++  IAE+L +SV T
Sbjct: 125 MILAGDTYVARAVLDILEAAD--NDGREALTMRERQVLYLIAEGCSNAAIAERLSISVKT 182

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V+ +      KL   +  Q +A A++ G +
Sbjct: 183 VDNHRTRLMAKLQVHSVAQLVAYALKSGLL 212


>gi|161520367|ref|YP_001583794.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344417|gb|ABX17502.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
          Length = 264

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 57/231 (24%), Gaps = 22/231 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72
             +    LH   +   A  FA  +           +    EL                  
Sbjct: 32  AADWQRALHACVDAFDA--FASPSAIVFYRLDASGEPADFELFGMPESMHRTYVA-RYRM 88

Query: 73  GDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            D        S    ++  + Q       +     R          +   +R      G 
Sbjct: 89  LDPLHPSRCASDARTVVTLASQLPDECRDASAYWTRFLRRHGVADVVEIWLRDDGRTVGA 148

Query: 132 VIFTSEFLMLAN---------------EVIIEAHGACYQVITDFLELFKK--RSSAARNL 174
                     A                + +          +T  L   +   R      L
Sbjct: 149 FSLLRFDTRGAARGGDGASTRFAPGEIDALARLQPLAEAALTPLLRTRRGIHRIECEARL 208

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           T RE    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 209 TYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 259


>gi|38234861|ref|NP_940628.1| two-component response regulator ChrA [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38201125|emb|CAE50849.1| two-component response regulator ChrA [Corynebacterium diphtheriae]
          Length = 199

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + VI    G           L ++ S   + L+ RE   LQ  
Sbjct: 91  AGAMGYLLKDAPESALHDAVIATFEGRRTLAPKVANALMQRVSKPRQALSAREIEILQNL 150

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ ++A KL +S  TV  +L     KL   NR  AI  A +   I
Sbjct: 151 EQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199


>gi|323492273|ref|ZP_08097431.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323313586|gb|EGA66692.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 222

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 38/56 (67%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           NLT+RE   ++L G G ++ +IAE+L +S +TV  +L +   K++A NR+QA+  A
Sbjct: 157 NLTKREKEIMRLLGHGASNIQIAEELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|310287962|ref|YP_003939221.1| response regulator of two-component system [Bifidobacterium bifidum
           S17]
 gi|309251899|gb|ADO53647.1| response regulator of two-component system [Bifidobacterium bifidum
           S17]
          Length = 277

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + R      L+ RE   ++L   GYT +E+A +L +S+ TV  ++ +   KL   NR +
Sbjct: 207 ERGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRTE 266

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 267 LTRWAADRRIV 277


>gi|258651012|ref|YP_003200168.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554237|gb|ACV77179.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 222

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARN 173
             +   +  G          +  L+ A   I                  L      A + 
Sbjct: 102 HLVLAAIHNGARGYVVKDVDTSALIRAIRDISRGGSAFDARSAAAMVRGLHAGPVDADKK 161

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L   G ++ +I +KL +S  TV  ++G+   KL    R +A+  A + G 
Sbjct: 162 LTSREQEVLELLSRGMSNVQIGKKLFISDTTVKFHVGNILRKLGVSRRAEAVHLAGKMGL 221

Query: 234 I 234
           I
Sbjct: 222 I 222


>gi|225022047|ref|ZP_03711239.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945168|gb|EEG26377.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 212

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 45/109 (41%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   A G      T    L  +  +   +LT RE   L+L 
Sbjct: 104 AGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRLMTRVRTPRTSLTPRELEVLKLV 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EI   L LS  TV ++L     KL   +R  A+A A + G +
Sbjct: 164 ASGSSNREIGRTLLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGVL 212


>gi|205357555|ref|ZP_02571444.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331191|gb|EDZ17955.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
          Length = 248

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 39  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 90

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     ++  +     +                    I   +R G      +      + 
Sbjct: 91  SRFGQQVVTVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 149

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ +     LT +E   + +  +G +++ IA +L +
Sbjct: 150 FSSEERLRAQAVQPLLGLAIHDSLQEDNDLESILTAKEREIVGMVCEGASNKLIARQLNI 209

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 210 SLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|146280184|ref|YP_001170341.1| hypothetical protein Rsph17025_4185 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558425|gb|ABP73036.1| hypothetical protein Rsph17025_4185 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 206

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 17/185 (9%)

Query: 52  CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111
            E+            I      D  L         I W  + +           +   GG
Sbjct: 33  TEISTLPPALMQKYCIRGLALEDPMLQWAFRNQGAICWTGLSDRDPAG-----VLAEYGG 87

Query: 112 LLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169
                G    +          + IF     + +   +        Q+     ++      
Sbjct: 88  HGLTYGAVVSIMTHGRPPLRSFGIFGRPDRIYSEAEMTRIGQILGQMHRSETQI------ 141

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+R+   L+L  +G+  ++IA  LG++   V   L SA ++L A    Q +  A+
Sbjct: 142 ----LTQRQIDVLRLLAEGHRYKKIAHILGITESAVKVRLKSAALRLGARTAAQTLRMAV 197

Query: 230 RFGYI 234
             G +
Sbjct: 198 SAGLL 202


>gi|325927834|ref|ZP_08189059.1| two component transcriptional regulator, LuxR family [Xanthomonas
           perforans 91-118]
 gi|325541824|gb|EGD13341.1| two component transcriptional regulator, LuxR family [Xanthomonas
           perforans 91-118]
          Length = 200

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 44/96 (45%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +       I A  A  +V+   + +   + +   +L+ RE   L+    G  + EIAE L
Sbjct: 103 MRKELRDTIRAVHAGRRVVPAEIAMELAQHAGEDDLSPREMEVLRELARGNANREIAESL 162

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  TV A++     KL A +R  A+  A++ G +
Sbjct: 163 SVTEGTVKAHMKRILSKLGAKDRTHAVLLALKRGIL 198


>gi|171743289|ref|ZP_02919096.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC
           27678]
 gi|171278903|gb|EDT46564.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC
           27678]
          Length = 248

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++EIA++L +S+ TV  ++     K++A +R+QA+  A
Sbjct: 183 PELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFA 242

Query: 229 IRFGYI 234
                +
Sbjct: 243 YENHLV 248


>gi|163761077|ref|ZP_02168154.1| two component transcriptional regulator, LuxR family protein
           [Hoeflea phototrophica DFL-43]
 gi|162281628|gb|EDQ31922.1| two component transcriptional regulator, LuxR family protein
           [Hoeflea phototrophica DFL-43]
          Length = 223

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE---------AHGACYQVITDFLELFKKRSSAARNL 174
           L     GYV+ +     +  +V+                   +           +   +L
Sbjct: 104 LRAGARGYVLKSGSLATIGKDVLSVIEGGSPISPQIARHLLAMVSSGAAGSSEGAPQIDL 163

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RET  L     GY   EI EKLG+S  TV  ++ +   KL+  +  +AIA+A R G +
Sbjct: 164 TNRETEILNAVAKGYKRREIGEKLGISTGTVGNHINNIYQKLNVNSNTEAIARATRMGLL 223


>gi|21219875|ref|NP_625654.1| two component system DNA binding response regulator [Streptomyces
           coelicolor A3(2)]
 gi|256789028|ref|ZP_05527459.1| two component system DNA binding response regulator [Streptomyces
           lividans TK24]
 gi|289772921|ref|ZP_06532299.1| two component system DNA binding response regulator [Streptomyces
           lividans TK24]
 gi|13122115|emb|CAC32294.1| putative two component system DNA binding response regulator
           [Streptomyces coelicolor A3(2)]
 gi|289703120|gb|EFD70549.1| two component system DNA binding response regulator [Streptomyces
           lividans TK24]
          Length = 211

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA+ V   A G           L  +  +    LT RET  L L 
Sbjct: 101 AGATGYLLKDAPPEDLADAVRTAAAGRTALAPAVADRLMHRLRTPGTTLTRRETEVLALV 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG +++ I  +L L+  TV ++L     KLD  +R  A+A A   G I
Sbjct: 161 ADGLSNQAIGRRLHLTEGTVKSHLARVYAKLDVDSRTAAVATAGSLGLI 209


>gi|325001951|ref|ZP_08123063.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 223

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 151 GACYQVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           G    V+ ++  L +       S A   LTERET  L+L   G T+ +IA KL +S  TV
Sbjct: 134 GLAGLVLGEYRRLAETPKPADGSPAVPALTERETEVLRLVAKGMTARQIAAKLVVSHRTV 193

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +++ +   KL   NR Q +  AI  G 
Sbjct: 194 ESHVQNTLRKLQLHNRSQLVRYAIEQGL 221


>gi|307328329|ref|ZP_07607506.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886033|gb|EFN17042.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 211

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA-----RNLTER 177
               GY+   +    +   +   A G       V    + L +++ +A        LT R
Sbjct: 95  AGALGYLTKEAGREDVDRALRAAARGQALLDPAVHARLVALARQQPAAGSGELPAGLTAR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E   L     G ++ EIA  L +S  TV  ++     K  + +R QAIA A R+G 
Sbjct: 155 EAEVLICMAKGLSNREIARSLFVSEATVKTHVNRVFAKTGSRDRGQAIAYAHRYGL 210


>gi|297622936|ref|YP_003704370.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164116|gb|ADI13827.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 478

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLL-----PFAGIAFPVRLGFHKNGYVIFTSEFL 139
            P+    + E+    +  QL  +L               A  +             +   
Sbjct: 296 KPLRALRLWEDPPEGAGRQLERKLRTKSGAVLDTLVFAEAITLEGKPGLLSMFHDITLRK 355

Query: 140 MLANEVII-------EAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGD 187
               E++        +A      V+   L   +  ++ A       LT RE   L+L  +
Sbjct: 356 QTEAELLAAIDAVMQDATWFGRSVVERLLRARRGATAEAPGATLGDLTARERQVLELIAE 415

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G  +EEIA  LGLS +TV  Y+ +   K+    R +A+  A   G I
Sbjct: 416 GQKNEEIALALGLSKNTVRNYVANLYAKIGVQGRAEAVIWARERGVI 462


>gi|289706045|ref|ZP_06502418.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557247|gb|EFD50565.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 227

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S    +LTERE   L+L   G ++ EIA  L +S  TV A L     KL+  +R+Q I +
Sbjct: 156 SPDGSDLTERELGVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIR 215

Query: 228 AIRFGYI 234
           A + G +
Sbjct: 216 AAQLGLV 222


>gi|38639353|gb|AAR25818.1| putative regulatory protein [Burkholderia cepacia]
          Length = 301

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 68/245 (27%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E S  +  + +      FA + +  A +      L                
Sbjct: 60  TLAHAQSTAERSRIVASLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PSTYRGDYV 117

Query: 67  ILIETYGDDFLFHFNSGLLPIIW-----QSIQEETVIESSGQL-----SVRLEGGLLPFA 116
                  D          +PI+W     +    E               ++        +
Sbjct: 118 RHHHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDAGPRASPAALDGFLQTMQDDGMCS 177

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 236

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296

Query: 230 RFGYI 234
           +   I
Sbjct: 297 KLELI 301


>gi|108805597|ref|YP_645534.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766840|gb|ABG05722.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 219

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 42/84 (50%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+ +     +   +  + L++RE   L+L  +G ++ EIA +L +S  TV +++ 
Sbjct: 131 RVAARVVRELHGARRAEPNVFQELSDREMEVLKLIAEGLSNAEIAARLYVSEKTVKSHVS 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R QA   A R G +
Sbjct: 191 NILGKLHLADRTQAAVYAWREGVV 214


>gi|297190315|ref|ZP_06907713.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150449|gb|EDY66317.2| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 283

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 32/71 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               S     LT RE   L L G G T++EIA +L LS  T   ++     KL A +R Q
Sbjct: 207 HPDPSPRLNALTAREHEVLGLVGAGLTNDEIARRLVLSPATAKTHVSRIMSKLGARDRTQ 266

Query: 224 AIAKAIRFGYI 234
            +  A   G I
Sbjct: 267 LVITAYESGMI 277


>gi|238919142|ref|YP_002932656.1| nitrate/nitrite response regulator protein NarP [Edwardsiella
           ictaluri 93-146]
 gi|238868710|gb|ACR68421.1| nitrate/nitrite response regulator protein NarP [Edwardsiella
           ictaluri 93-146]
          Length = 215

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    I   V         ++              E ++       +        
Sbjct: 78  LRSEGIDARIIILTVSDARSDVYALVDAGADSYLLKDSEPEALLAQIRQAAEGRSVFSES 137

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           ++ +L    + +    +LTERE   LQ    G ++++IA +L +S  TV  ++ +   KL
Sbjct: 138 VSAYLSTRSEIADPLADLTERELDVLQEVVRGMSNKQIAAQLHISEETVKVHIRNLLRKL 197

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 198 NVRSRVAATVL 208


>gi|271965002|ref|YP_003339198.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508177|gb|ACZ86455.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 42/84 (50%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G    ++    ++  +R++A   LT RE     L   G ++ EI  +L LS +TV +++ 
Sbjct: 130 GVAATILDLVRQVPIRRTAALDGLTPREVEIFGLLARGRSNSEICAELVLSENTVKSHVR 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KLD  +R+ A+  A   G +
Sbjct: 190 AVLQKLDLRDRVHAVIHAYENGLV 213


>gi|226940995|ref|YP_002796069.1| NarL [Laribacter hongkongensis HLHK9]
 gi|226715922|gb|ACO75060.1| NarL [Laribacter hongkongensis HLHK9]
          Length = 218

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 40/102 (39%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            + +S    +  + ++        V                +LT RE   L+    G ++
Sbjct: 113 FLLSSIRRAVTGDSVLSPEMTAKLVARLRDPRPAASRPDVDSLTPRERETLRHLARGASN 172

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +EIA  L L+  TV  ++ +   KL+  +R+QA   A+    
Sbjct: 173 KEIARSLDLAESTVKVHVQNILRKLNLSSRVQAAVFAVENEL 214


>gi|154486803|ref|ZP_02028210.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis
           L2-32]
 gi|154084666|gb|EDN83711.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis
           L2-32]
          Length = 245

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 183 DRLSNREQEVMRLIARGYTYKEVASELFISIKTVETHMSSVLRKLQLSNRSELTRWAADR 242

Query: 232 GYI 234
             +
Sbjct: 243 RIV 245


>gi|126462491|ref|YP_001043605.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104155|gb|ABN76833.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 240

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAE 196
            + +    I    A    +   L   ++++  +    LTE+E   +    +G  ++EIA 
Sbjct: 143 PVRSLGNAIRFMHAGEHYLPLELARDRRQAPDSSGGRLTEKEMLVMSYLAEGRQNKEIAH 202

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L+  T+  ++ S   KL A NR QA+  A   G I
Sbjct: 203 GLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 240


>gi|330720547|gb|EGG98827.1| two component transcriptional regulator2C LuxR family protein
           [gamma proteobacterium IMCC2047]
          Length = 151

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              +    E +         V ++FLEL ++       LT+RE   L +   G  ++EIA
Sbjct: 49  GSPVDQMREKLPLISQGGRYVASEFLELIQQ-GQQVSALTDRELQVLNMIVAGKINKEIA 107

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E L +S  TV+ +  S   KL+  +  Q +A+A++ G I
Sbjct: 108 EALFISPKTVDKHRTSLMSKLEVHSVAQLLARALKDGLI 146


>gi|330445311|ref|ZP_08308963.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489502|dbj|GAA03460.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 208

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 11/134 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154
              +    +    +   V         ++              + +IE   +        
Sbjct: 68  LNAMRNEGILACIVVLTVSDSRSDIKTLLNAGADGYLLKDTEPDELIELLKSALCGGKAY 127

Query: 155 -QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
             V+ + L            LTERE   LQ    G  + +IAE+L +S  TV  ++ S  
Sbjct: 128 SAVVKECLAEQHSTDDMLSQLTERELQILQEVAKGQRNRQIAEQLFISEATVKVHMKSLL 187

Query: 214 VKLDAVNRIQAIAK 227
            KL   +R  A   
Sbjct: 188 KKLQVKSRTAATIL 201


>gi|319652400|ref|ZP_08006516.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317395862|gb|EFV76584.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 210

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G   +V+   ++  +       +LT RE + L+  G+G ++ EIAE+L +S  TV     
Sbjct: 128 GVAAKVVPQLMK-QQDTKEPDPSLTPRERAILKCIGEGLSNNEIAERLAISTGTVKNNTS 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KLD  +R Q    AIR   +
Sbjct: 187 QILTKLDLRDRTQLAIYAIRHNLV 210


>gi|284043079|ref|YP_003393419.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947300|gb|ADB50044.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 229

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R  A   LTERE   L+L   G ++ EIAE+L ++  TV  ++    +KL   +R+QA+ 
Sbjct: 153 RPPALDELTERELEVLELIACGLSNAEIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVV 212

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 213 LAYEAGVV 220


>gi|261250785|ref|ZP_05943359.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891]
 gi|260937658|gb|EEX93646.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891]
          Length = 222

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 38/56 (67%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           NLT+RE   ++L G G ++ +IA++L +S +TV  +L +   K++A NR+QA+  A
Sbjct: 157 NLTKREKEIMRLLGHGASNVQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|325266892|ref|ZP_08133563.1| nitrate/nitrite response regulator protein NarL [Kingella
           denitrificans ATCC 33394]
 gi|324981633|gb|EGC17274.1| nitrate/nitrite response regulator protein NarL [Kingella
           denitrificans ATCC 33394]
          Length = 224

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 38/80 (47%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +++   +   +  S+    LT RE   L     G++++ IA  L L+  TV  ++ +  
Sbjct: 134 ARLVQSLIRPHQPESTPLDELTARELEILGHLSAGHSNKIIARHLDLAESTVKVHVQNIL 193

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KL+  +R+QA   A++   
Sbjct: 194 RKLELDSRVQAAVYAVQHNI 213


>gi|256395013|ref|YP_003116577.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361239|gb|ACU74736.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 441

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RET  L L   G ++ EIA +L ++  TV  ++     KL   +R QA+  A   G
Sbjct: 366 ALTPRETEVLLLIARGLSNPEIAAELVVTDETVKTHVSRVLTKLGLRDRTQAVVAAYESG 425

Query: 233 YI 234
            +
Sbjct: 426 LV 427


>gi|289425149|ref|ZP_06426926.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289426574|ref|ZP_06428314.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295130635|ref|YP_003581298.1| putative Hemoglobin-dependent two component system response
           regulator HrrA [Propionibacterium acnes SK137]
 gi|289154127|gb|EFD02815.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289160218|gb|EFD08382.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377220|gb|ADE01075.1| putative Hemoglobin-dependent two component system response
           regulator HrrA [Propionibacterium acnes SK137]
 gi|313764411|gb|EFS35775.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772207|gb|EFS38173.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792097|gb|EFS40198.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313801951|gb|EFS43185.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313807563|gb|EFS46050.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810072|gb|EFS47793.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313812898|gb|EFS50612.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815948|gb|EFS53662.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818604|gb|EFS56318.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313825246|gb|EFS62960.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313827534|gb|EFS65248.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313830402|gb|EFS68116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313833772|gb|EFS71486.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313838777|gb|EFS76491.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915403|gb|EFS79234.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918316|gb|EFS82147.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920126|gb|EFS83957.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314931648|gb|EFS95479.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955704|gb|EFT00106.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958103|gb|EFT02206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314959957|gb|EFT04059.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314962754|gb|EFT06854.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314967878|gb|EFT11977.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314973404|gb|EFT17500.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314976083|gb|EFT20178.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314978528|gb|EFT22622.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314983897|gb|EFT27989.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988079|gb|EFT32170.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989886|gb|EFT33977.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315077971|gb|EFT50022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315080596|gb|EFT52572.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315084266|gb|EFT56242.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315085610|gb|EFT57586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315088338|gb|EFT60314.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095949|gb|EFT67925.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315098580|gb|EFT70556.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101419|gb|EFT73395.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315108635|gb|EFT80611.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326231|gb|EGE68021.1| DNA-binding response regulator VraR [Propionibacterium acnes
           HL096PA2]
 gi|327331894|gb|EGE73631.1| DNA-binding response regulator VraR [Propionibacterium acnes
           HL096PA3]
 gi|327443096|gb|EGE89750.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327445878|gb|EGE92532.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448140|gb|EGE94794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327450738|gb|EGE97392.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327453185|gb|EGE99839.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327453920|gb|EGF00575.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328753426|gb|EGF67042.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328754157|gb|EGF67773.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328754593|gb|EGF68209.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328760809|gb|EGF74375.1| DNA-binding response regulator VraR [Propionibacterium acnes
           HL099PA1]
 gi|332675478|gb|AEE72294.1| nitrate/nitrite response regulator protein NarP [Propionibacterium
           acnes 266]
          Length = 210

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + +   A G           L  +  S   +LT RE   L+ +
Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMARMRSPRTSLTARELDVLEAS 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +IAE L +S  TV  +L     KL   +R  A+AKA   G+I
Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|251795413|ref|YP_003010144.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247543039|gb|ACT00058.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 235

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 33/69 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             S+    LT RE   L+    G +++EIA   GLS HTV  +L +   KL   NR+Q  
Sbjct: 165 DASAMTTPLTAREKDILERVVTGESNKEIAVAFGLSEHTVKNHLKNILQKLHLDNRVQLT 224

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 225 RYAYEQGML 233


>gi|75812776|ref|YP_320393.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705532|gb|ABA25204.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 209

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE + L+    G ++ EIA  L +   TV +++     KLD  +R QA+  A++ 
Sbjct: 145 PELSERELAVLRSLAQGMSNAEIAAALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKR 204

Query: 232 GYI 234
           G +
Sbjct: 205 GIV 207


>gi|302522019|ref|ZP_07274361.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302430914|gb|EFL02730.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 150

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +F +         ++ A     +++T         +     L+ RE   L L   G ++
Sbjct: 42  ELFAAVRATADGRSVL-APAVASRLVTSLRAPGADETPPRTPLSAREREVLALVARGTSN 100

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA  L LS  TV  +L     KL   +R  A+A     G +
Sbjct: 101 REIARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 143


>gi|256784889|ref|ZP_05523320.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 226

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V      L      AA +LT RET  L L   G ++ EIA +L ++ HTV  ++ 
Sbjct: 134 LIAEFVHARGSRL---PVPAAGDLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHIN 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+  +R QA+  A   G +
Sbjct: 191 RLFAKLELRDRAQAVIVAYELGLV 214


>gi|169833204|ref|YP_001695355.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|168995706|gb|ACA36318.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
          Length = 199

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|309799510|ref|ZP_07693740.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308116866|gb|EFO54312.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 199

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    LTE+E + L     G +++EIA+KL LS  TV  Y+ +   KL+A NR
Sbjct: 127 ELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLNASNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A   A   G++
Sbjct: 187 TEAAKTAEEEGWL 199


>gi|298241780|ref|ZP_06965587.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554834|gb|EFH88698.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 236

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A + LT RE   L+L  +G T++EIA+KL +S+ TV A+  +   KL   +  Q +  A+
Sbjct: 168 ALQTLTGREMEVLKLVAEGSTNQEIADKLVISIKTVQAHRSNMMEKLGLHDITQLVRFAL 227

Query: 230 RFGYI 234
            +G I
Sbjct: 228 HYGLI 232


>gi|262191657|ref|ZP_06049834.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT
           5369-93]
 gi|262032446|gb|EEY51007.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT
           5369-93]
          Length = 201

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L   + 
Sbjct: 73  VILTVSDSAADIQALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 132

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 133 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 192

Query: 227 KAIRF 231
             +  
Sbjct: 193 LYLER 197


>gi|152999817|ref|YP_001365498.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|151364435|gb|ABS07435.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
          Length = 216

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L     G++++EIA  + L+  TV  ++ +   KLD  +R QA+ K ++ 
Sbjct: 154 ELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQL 213

Query: 232 GYI 234
             I
Sbjct: 214 ALI 216


>gi|323130577|gb|ADX18007.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 238

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 94  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 153

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 154 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 213

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 214 NLLRKLNVRSRVAATIL 230


>gi|302868391|ref|YP_003837028.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302571250|gb|ADL47452.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 212

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 45/109 (41%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V   A G      T    L  +  +    LT RET  L L 
Sbjct: 102 AGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALV 161

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++  I  +L L+  TV ++L     KL   +R  A+A A   G I
Sbjct: 162 ADGLSNHSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210


>gi|261392488|emb|CAX50039.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis 8013]
 gi|308389343|gb|ADO31663.1| putative two-component system response regulator narL [Neisseria
           meningitidis alpha710]
 gi|325128344|gb|EGC51228.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           N1568]
          Length = 218

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|289208427|ref|YP_003460493.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288944058|gb|ADC71757.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp.
           K90mix]
          Length = 232

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 151 GACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                ++T  + L++++       A  LT+RE   L + G G T+  IA++L +S HTV 
Sbjct: 128 WMSRHLMTRLVRLYRQQRTNTYRPACGLTQRELEILAMLGSGETNMNIAKQLFISEHTVK 187

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L +   K++  NR QAI  A   
Sbjct: 188 SHLYNIFRKIEVKNRTQAINWAKDH 212


>gi|305680308|ref|ZP_07403116.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659839|gb|EFM49338.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 212

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 45/109 (41%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   A G      T    L  +  +   +LT RE   L+L 
Sbjct: 104 AGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRLMTRVRTPRTSLTPRELEVLKLV 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EI   L LS  TV ++L     KL   +R  A+A A + G +
Sbjct: 164 ASGSSNREIGRALLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGVL 212


>gi|256391849|ref|YP_003113413.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256358075|gb|ACU71572.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                +SG L  R     L  A     +         +       ++             
Sbjct: 95  ALAAGASGFLLKRTRPEHLIAA-----IHTIAGGEALLSPAVTRTVIDR----------- 138

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             + +      +       LT RE   L+L   G ++ EIA+ L +S  TV  ++     
Sbjct: 139 --MIEQPARDPRTMRRLSALTPRERDVLELVARGLSNPEIAQTLVVSESTVKTHMKRILD 196

Query: 215 KLDAVNRIQAIAKAIRFG 232
           KLD  +R+QA+  A   G
Sbjct: 197 KLDLRDRVQAVILAYEAG 214


>gi|225076056|ref|ZP_03719255.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens
           NRL30031/H210]
 gi|241758839|ref|ZP_04756952.1| transcriptional regulatory protein DegU [Neisseria flavescens
           SK114]
 gi|224952616|gb|EEG33825.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens
           NRL30031/H210]
 gi|241321047|gb|EER57260.1| transcriptional regulatory protein DegU [Neisseria flavescens
           SK114]
          Length = 218

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              +  + +         V +       +       LT RE   L     G++++ IA  
Sbjct: 117 RKAVDGDNVFSPEMTSRLVQSLISPSPSRSDHLLEQLTPREMEILGYLAAGHSNKIIARH 176

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L L+  TV  ++ +   KL+  +R+QA   A++ 
Sbjct: 177 LNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210


>gi|284054156|ref|ZP_06384366.1| transcriptional regulator, LuxR family protein [Arthrospira
           platensis str. Paraca]
 gi|291570920|dbj|BAI93192.1| LuxR family transcriptional regulator [Arthrospira platensis
           NIES-39]
          Length = 105

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 40/63 (63%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ERE   ++L   G T++EIAEKL +S  TV+ ++ +   K    NR++ +  ++++G
Sbjct: 11  SLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVELVRWSLQWG 70

Query: 233 YIC 235
            +C
Sbjct: 71  KVC 73


>gi|209526078|ref|ZP_03274610.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328]
 gi|209493466|gb|EDZ93789.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328]
          Length = 105

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 40/63 (63%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ERE   ++L   G T++EIAEKL +S  TV+ ++ +   K    NR++ +  ++++G
Sbjct: 11  SLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVELVRWSLQWG 70

Query: 233 YIC 235
            +C
Sbjct: 71  KVC 73


>gi|108803724|ref|YP_643661.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108764967|gb|ABG03849.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 253

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L+    G T+ EI   L +SV TV ++ GS   KL   NR +AIA+A   
Sbjct: 190 EPLSERELEVLKHIASGRTNSEIGRHLYVSVGTVKSHTGSIYRKLGVRNRAEAIARAREL 249

Query: 232 GYI 234
             +
Sbjct: 250 KLL 252


>gi|152965947|ref|YP_001361731.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360464|gb|ABS03467.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 230

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAG 186
               ++ +   ++    V         Q  T   E          R+LT RE   L+   
Sbjct: 113 DAIRIVASGSSVVAPRVVRRMLDLFAPQFPTTAGEARDDGLDHRLRSLTPRELDVLRCLA 172

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G ++ EIAE+L LS+ TV  ++G+   KL   +R+QA+  A  FG +
Sbjct: 173 EGSSNAEIAERLVLSLTTVKTHVGNILAKLGLRDRVQAVIAAYEFGLV 220


>gi|199597520|ref|ZP_03210949.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591543|gb|EDY99620.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 202

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 37/68 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            ++ +  LTERE + L     G +S++IA  L LS  TV  YL +   KL   NRI+AI 
Sbjct: 134 ITAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIE 193

Query: 227 KAIRFGYI 234
            A R  ++
Sbjct: 194 MAKRNKWL 201


>gi|115376214|ref|ZP_01463456.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366787|gb|EAU65780.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 202

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +  + L++RE   LQL   G ++ E A  L LS  T+  +L     KL+  NR++A
Sbjct: 131 PDADALLKPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEA 190

Query: 225 IAKAIRFGYI 234
           + + IR G I
Sbjct: 191 VTEGIRKGLI 200


>gi|34541106|ref|NP_905585.1| LuxR family DNA-binding response regulator [Porphyromonas
           gingivalis W83]
 gi|34397422|gb|AAQ66484.1| DNA-binding response regulator, LuxR family [Porphyromonas
           gingivalis W83]
          Length = 227

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   +Q   DGY+++E AEK+ LS  TV  +  +   KL   N  + I  A++ G
Sbjct: 163 ELTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFTNAAELIRYAVKSG 222

Query: 233 YI 234
            +
Sbjct: 223 LV 224


>gi|324114391|gb|EGC08360.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 214

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 14/141 (9%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              E ++ A           
Sbjct: 71  LNALRRDGVTAQIIIITVSDSASDIYALIDAGADGYLLKDSEPESLLAAIQKGANGGKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++++L   ++  S       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SARVSEYLRERERFGSKDDPFSTLTERELDVLHELAKGLSNKQIASALNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           +   KL+  +R+ A    ++ 
Sbjct: 191 NLLRKLNVRSRVAATILFLQH 211


>gi|315646683|ref|ZP_07899799.1| two-component response regulator yhcZ [Paenibacillus vortex V453]
 gi|315277889|gb|EFU41212.1| two-component response regulator yhcZ [Paenibacillus vortex V453]
          Length = 213

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
              H      +   +    + +     LT+RE   L+    G +++EIA +L ++  TV 
Sbjct: 124 RMLHPQVTNQLIAHVATDGEAAKGIDILTKREQHVLEQITMGRSNKEIAVELHITEKTVK 183

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++     K++  +R QA   AIR  +
Sbjct: 184 THITHILGKMEVQDRTQAALYAIRNHW 210


>gi|302340120|ref|YP_003805326.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637305|gb|ADK82732.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 220

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 +++ +   +     SA   LT RE   ++L   G +  ++A+ L +S  TV  +
Sbjct: 132 LDAIVGKLLENSYNIMDVSDSAYATLTAREQEIMRLLAQGNSVRKVAQMLFISKKTVENH 191

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
             S   KL+  N ++ +  A R G I
Sbjct: 192 RTSIFKKLNINNSVELVHYATRIGLI 217


>gi|163839801|ref|YP_001624206.1| LuxR family two-component response regulator [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953277|gb|ABY22792.1| two-component response regulator, LuxR family [Renibacterium
           salmoninarum ATCC 33209]
          Length = 67

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++LT RE     L   GY++ EIA  L LS  TV  ++G    KL A +R+Q +  A   
Sbjct: 2   QSLTAREHELFLLIAQGYSNPEIASNLFLSEATVKTHVGHILSKLGARDRVQIVVIAYET 61

Query: 232 G 232
           G
Sbjct: 62  G 62


>gi|89897364|ref|YP_520851.1| hypothetical protein DSY4618 [Desulfitobacterium hafniense Y51]
 gi|89336812|dbj|BAE86407.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 212

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +    A   LTERE   L L   G+T+ EIA  L +S  TV+ +  +   KL   ++++
Sbjct: 140 RQGNEDAYETLTEREREILILLAKGHTNNEIAPILNISSKTVDYHRSNLMKKLSLHSKVE 199

Query: 224 AIAKAIRFGYI 234
               A++ G I
Sbjct: 200 LTKYALKRGLI 210


>gi|116054260|ref|YP_788704.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254243626|ref|ZP_04936948.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192]
 gi|115589481|gb|ABJ15496.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126197004|gb|EAZ61067.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192]
          Length = 496

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITD 159
              G     +  A  +         ++  S+      E+       + +A      +I  
Sbjct: 348 DRNGLDCLVSAEAVSLNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEK 407

Query: 160 FLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
              + +  +        +LT RE     L   G   +EIA++LGL+ +TV  ++ +   K
Sbjct: 408 LANVRRANAPGTGAELADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAK 467

Query: 216 LDAVNRIQAIAKAIRFGY 233
           LD  +R +AI  A   G+
Sbjct: 468 LDVHSRGEAIVWARERGF 485


>gi|77465691|ref|YP_355194.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464170|ref|YP_001045283.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221369755|ref|YP_002520851.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|77390109|gb|ABA81293.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126105981|gb|ABN78511.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221162807|gb|ACM03778.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
          Length = 226

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 18/181 (9%)

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
           +         +      D  +    S      W ++             +          
Sbjct: 61  FPSSWIRHYTVQAFGLRDPLIRWAASANGAARWSAVHLPDEAG-----VLAAYRRHGLRF 115

Query: 117 G--IAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
           G  I  P R    +   + +F      + N  I        ++           +     
Sbjct: 116 GCVIGLPARTARSRKRSFGLFARNDREMTNHEIATLRATLAELH----------APNRDA 165

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT  +   L++  +G   +EIA +LG++   V A   +A  +L A   +QA   A R G 
Sbjct: 166 LTPSQAEVLRMLSEGVRYKEIAHRLGITEGAVKARFKAACDRLGARTAVQAANIAQRRGL 225

Query: 234 I 234
           +
Sbjct: 226 L 226


>gi|300784317|ref|YP_003764608.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793831|gb|ADJ44206.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 213

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA----ARNLTE 176
           L     G++   ++   +A  +   A G      ++    +E   + +         LT 
Sbjct: 95  LRAGARGFLTKDADAESIARALRSAAAGQSTVDGELQRRLVEAAARSAPPRVKEVEGLTA 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   L+L   G ++ EIA  L +S  TV  ++     K    +R QA+A A R G 
Sbjct: 155 RELEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFAYRAGI 211


>gi|297197302|ref|ZP_06914699.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|297146673|gb|EFH28280.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 228

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           +G         H    V        L    I            +              LT
Sbjct: 101 SGFLLKDVTPEHLVAAVRLVRSGDALLAPTITR-RLIERFAQREEAVPSADVHRDLSGLT 159

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L+L   G ++ E+AE+L LS  TV  ++G    KL+  +R+QA+  A   G I
Sbjct: 160 PRELEVLRLLATGLSNAELAERLFLSPTTVKTHIGRILSKLELRDRVQAVVLAYESGLI 218


>gi|318061580|ref|ZP_07980301.1| two component system response regulator [Streptomyces sp. SA3_actG]
 gi|318080493|ref|ZP_07987825.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 167

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   ++L   G ++ EIA +L LS  TV  ++G    KL   +R+Q +  A
Sbjct: 94  PELDRLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLA 153

Query: 229 IRFGYI 234
              G +
Sbjct: 154 YETGIV 159


>gi|308178154|ref|YP_003917560.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745617|emb|CBT76589.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 18/143 (12%)

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGA--------CYQVI 157
           G L     +A  V         VI +         ++   I +A             ++ 
Sbjct: 80  GLLGSTRFLALSVSDAAQDVVTVIRSGARGYVTKSISGAEISDAVRRVAGGDAVFSPRLA 139

Query: 158 TDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              L+ F   +  A        L++RE   ++L   GY+ +E+A++L +SV TV +++ +
Sbjct: 140 GFVLDAFGSSTPVAEIDEELDLLSDRELQVMRLIARGYSYKEVAKELFISVKTVESHVSN 199

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   NR +    A+    +
Sbjct: 200 VLRKLQLSNRHELTRWAVDRKIL 222


>gi|194476794|ref|YP_002048973.1| possible transcriptional regulator [Paulinella chromatophora]
 gi|171191801|gb|ACB42763.1| possible transcriptional regulator [Paulinella chromatophora]
          Length = 90

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           + L    +  + NL+ RE   ++L   G T++EIA  L +S  TV+ ++ +   K    N
Sbjct: 1   MSLIAHFTLPSDNLSGREVELIELLATGLTNQEIATHLMISKRTVDNHICNIFTKTGVNN 60

Query: 221 RIQAIAKAIRFGYIC 235
           RI+ +  AI  G IC
Sbjct: 61  RIKLLNWAIDSGRIC 75


>gi|167554141|ref|ZP_02347882.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442551|ref|YP_002041509.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198244741|ref|YP_002216317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857666|ref|YP_002244317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194401214|gb|ACF61436.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197939257|gb|ACH76590.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205321582|gb|EDZ09421.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|206709469|emb|CAR33813.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 215

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|16765574|ref|NP_461189.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62180821|ref|YP_217238.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161613039|ref|YP_001587004.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167992577|ref|ZP_02573674.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168242357|ref|ZP_02667289.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261744|ref|ZP_02683717.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466061|ref|ZP_02699931.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194449116|ref|YP_002046301.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197265746|ref|ZP_03165820.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|200388108|ref|ZP_03214720.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238913787|ref|ZP_04657624.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|16420784|gb|AAL21148.1| response regulator in two-component regulatory system with NarQ (or
           NarX) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62128454|gb|AAX66157.1| response regulator in two-component regulatory system with NarQ (or
           NarX) [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362403|gb|ABX66171.1| hypothetical protein SPAB_00746 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407420|gb|ACF67639.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195631360|gb|EDX49920.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197244001|gb|EDY26621.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|199605206|gb|EDZ03751.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205329245|gb|EDZ16009.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205338346|gb|EDZ25110.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205349503|gb|EDZ36134.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|261247456|emb|CBG25283.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994331|gb|ACY89216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158805|emb|CBW18318.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913237|dbj|BAJ37211.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321224903|gb|EFX49966.1| Nitrate/nitrite response regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322715299|gb|EFZ06870.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|332989180|gb|AEF08163.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 215

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|325202056|gb|ADY97510.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240149]
 gi|325208190|gb|ADZ03642.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           NZ-05/33]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|167588375|ref|ZP_02380763.1| transcriptional regulator FimZ [Burkholderia ubonensis Bu]
          Length = 169

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 13/165 (7%)

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTS 136
              PI    +  E       +L  R+    L    + F             K G   F S
Sbjct: 5   REHPIELAILDIEIPGGDGLRLLKRIRAEGLKTRVLIFSAMDERIYSVRASKAGANGFLS 64

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTERETSCLQLAGDGY 189
           +   +A  +I         +      +        ++ ++    LT+RE + L+    G 
Sbjct: 65  KRNDIAQILIAVKTILSGYLFFPAEAVSALYHDRTRQSANRTGGLTDRELTVLRGLARGS 124

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +I E L +S  TV+ Y  +   KL   + +     A R G I
Sbjct: 125 SNRQIGEDLCISNKTVSTYKSNIFEKLGVSSVVGLADYARRNGLI 169


>gi|153831751|ref|ZP_01984418.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
 gi|148872261|gb|EDL71078.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
          Length = 214

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 150 HGACYQVITDFL------ELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +    +++   +      E+      A    LT RE   LQ+  +G ++ EIA+ L +S 
Sbjct: 125 NWLSRRLLDQLVNYYKGKEVHHVVEPAIEVELTRREVQVLQMLKEGGSNMEIADSLFISE 184

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           HT+ ++L +   K++  NR QA + A R 
Sbjct: 185 HTIKSHLYNIFRKIEVKNRTQATSWAKRN 213


>gi|87124675|ref|ZP_01080523.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9917]
 gi|86167554|gb|EAQ68813.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9917]
          Length = 188

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R     +L+++E   + +  DG +++EI+E+L +S+ TV ++L S   KL   +R QA  
Sbjct: 117 RPPGWDDLSKKELEVIYILADGLSNKEISEQLFVSIETVKSHLNSIYSKLAVRSRAQAAI 176

Query: 227 KA 228
            A
Sbjct: 177 LA 178


>gi|310821776|ref|YP_003954134.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309394848|gb|ADO72307.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 254

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +  + L++RE   LQL   G ++ E A  L LS  T+  +L     KL+  NR++A
Sbjct: 183 PDADALLKPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEA 242

Query: 225 IAKAIRFGYI 234
           + + IR G I
Sbjct: 243 VTEGIRKGLI 252


>gi|239916849|ref|YP_002956407.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414690|ref|ZP_06246432.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838056|gb|ACS29853.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 227

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S    +LTERE   L+L   G ++ EIA  L +S  TV A L     KL+  +R+Q I +
Sbjct: 156 SPDGSDLTERELGVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIR 215

Query: 228 AIRFGYI 234
           A + G +
Sbjct: 216 AAQLGLV 222


>gi|172040144|ref|YP_001799858.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851448|emb|CAQ04424.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 264

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +        LT RE   L L   G +++EIAEKL +S+ TV  ++G   +K  + +R+ A
Sbjct: 185 EDDLGLVDPLTRREREILCLIAKGQSNQEIAEKLFISLPTVKTHVGRVLMKTGSRDRVHA 244

Query: 225 IAKAIRFGYI 234
           +  A++   +
Sbjct: 245 VLFALKHHLV 254


>gi|29832581|ref|NP_827215.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609701|dbj|BAC73750.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E    R+     LT RE   L     G++++EIAE+L +S  TV  ++  A  KL A +R
Sbjct: 150 ERDPARAERLDALTGREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDR 209

Query: 222 IQAIAKAIRFGYI 234
            Q +  A   G +
Sbjct: 210 AQLVVIAYESGLV 222


>gi|300868966|ref|ZP_07113570.1| GAF modulated transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
 gi|300333033|emb|CBN58762.1| GAF modulated transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
          Length = 233

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 19/225 (8%)

Query: 11  SSSLQELSPRL------HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            + LQ L   L        +++RI A     +T   +  F               +  ++
Sbjct: 1   MADLQSLFQILTQAKDEQELRSRICAEVSEYFTAKRSGLFFFDAPKRRIRDRNLQNLMEL 60

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
               + T  +  L +      P+     +   V   + QL            G   P+  
Sbjct: 61  ---ALSTEHNPVLRYLVERHTPVH----EALVVSPKAWQLICPRADHWHVMTG---PIVN 110

Query: 125 GFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELF-KKRSSAARNLTERETSC 181
                G V FT +  M + +   +++    C  + T    +    +      LT RE   
Sbjct: 111 QGQLVGAVGFTRDRSMGSFDTQNLMDLSALCLHLSTWVARVRSPHQLLHTNRLTSRELQI 170

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +L   G T+ EI E+L ++ ++V   L     KL+  +R Q +A
Sbjct: 171 AELVAQGLTNAEIGERLWITENSVKQALKRMFRKLEVSSRAQMVA 215


>gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 226

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 15/226 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALD---FPRRQQLICELHNYDLDSGDIPNILIE 70
           + +       +Q  ++   F++    +A       ++Q     + +  +   D    L +
Sbjct: 8   VDDEPGLREAVQAYLEDSGFSVAAAPNAQAGWELLQQQTPDLVITDIMMPQVDGYQFLQQ 67

Query: 71  TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
              D          LP+++   + + ++ +   +  +   L     P   +A    +   
Sbjct: 68  LRDDP-----RYSRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNILRQ 122

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +       S  L      I E       ++T    L +  +    +LT RE S L L   
Sbjct: 123 RTNQQSSESTNLADLASQIAE----IRSILTKQNALERNITPIKIDLTPREQSVLDLVAQ 178

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G  ++EIA  L  SV  +  Y+     K    +R + +  A+  G 
Sbjct: 179 GLMNKEIARHLNTSVRNIEKYVSRLFSKTGTNSRTELVRFALEHGL 224


>gi|119717710|ref|YP_924675.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538371|gb|ABL82988.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 229

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++   L        A   LT++E         G ++ EIA  + LS  TV  ++G+   K
Sbjct: 147 LLDGRLRSQAPLPPAYLTLTDKEREVFTAVARGLSNTEIAGLVFLSESTVKTHVGAILRK 206

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R+Q +  A   G +
Sbjct: 207 LGLRDRVQIVVFAYEHGLV 225


>gi|78047709|ref|YP_363884.1| two-component response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036139|emb|CAJ23830.1| two-component response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 214

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 44/96 (45%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +       I A  A  +V+   + +   + +   +L+ RE   L+    G  + EIAE L
Sbjct: 117 MRKELRDTIRAVHAGRRVVPAEIAMELAQHAGEDDLSPREMEVLRELARGNANREIAESL 176

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  TV A++     KL A +R  A+  A++ G +
Sbjct: 177 SVTEGTVKAHMKRILSKLGAKDRTHAVLLALKRGIL 212


>gi|332523779|ref|ZP_08400031.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315043|gb|EGJ28028.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 198

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL ++ + +   L+ RE   + L   G ++ EIA+KL LS  TV  YL     KL+A NR
Sbjct: 126 ELIEEVTFSTNPLSPREQEVMSLVVQGASNHEIAQKLFLSNGTVRNYLTCVFTKLNANNR 185

Query: 222 IQAIAKAIRFGYI 234
            +A       G+I
Sbjct: 186 TEAAKIVQEKGWI 198


>gi|323490881|ref|ZP_08096077.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395449|gb|EGA88299.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 198

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  S    LA  +     G          EL     +    LT+RE   ++L 
Sbjct: 94  AGVSGYLLKDSPSEDLATSIRTIMSGRRIYA----PELVDLAYADENPLTDREKQVMELI 149

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +G +++EIA++L ++  TV  Y+ +   KL+  NRI+AI++    G+
Sbjct: 150 AEGRSTKEIAKELFITTGTVRNYISTILDKLEVSNRIEAISRFKEKGW 197


>gi|307545446|ref|YP_003897925.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Halomonas elongata DSM 2581]
 gi|307217470|emb|CBV42740.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Halomonas elongata DSM 2581]
          Length = 219

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query: 109 EGGLLPFAG--IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------- 154
                 FAG  + F V          +           +  + ++               
Sbjct: 74  RLRANEFAGRIVIFTVSDHEEDVVAALHAGADGYLLKDMDPDDMVHQLRQAALGRMVISD 133

Query: 155 ---QVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               ++ + L   K +  +    +LT+RE   L+    G +++ IA +L ++  TV  ++
Sbjct: 134 SLASLLAEALRNQKGQSTAPDIHSLTQREREILRELAAGLSNKLIARRLDITEGTVKVHV 193

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL+  +R++A   A++ G 
Sbjct: 194 KHLLKKLNLRSRVEAAVWAVQEGI 217


>gi|290963157|ref|YP_003494339.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652683|emb|CBG75816.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 231

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEI 194
            ++A    + A     ++I D          AAR     LT RE   L L   G ++ EI
Sbjct: 125 RVIAAGDALLAPSVTRRLIEDMARRRPAPPGAARLRLNGLTPREAEVLSLVAQGQSNTEI 184

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL A +R Q +  A   G +
Sbjct: 185 AARLVVAEQTVKTHMTRLLAKLGARDRAQLVVFAYESGLV 224


>gi|257069188|ref|YP_003155443.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256560006|gb|ACU85853.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 229

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 51/121 (42%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG +  +         +            +   A     + +    E  ++ +S   N
Sbjct: 104 IRAGASGFLLKDAQPEDLLGAIRTVHSGDAVIAPSATRRLLERVVAAPEPEQQDASVLEN 163

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L L G G++++EI  +L ++  TV  ++G    KL A +R+QA+  A   G 
Sbjct: 164 LTEREREVLTLMGRGFSNQEIGAELFVAEATVKTHVGRVLAKLGARDRVQAVIIAFETGL 223

Query: 234 I 234
           +
Sbjct: 224 V 224


>gi|291299547|ref|YP_003510825.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568767|gb|ADD41732.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
            ++A    + A     +++ DF       + +     LTERET  L L   G +++EIA 
Sbjct: 118 RVVARGDALIAPTITRRLLADFATQHRAPQPNPRLNALTERETEVLGLIAAGLSNDEIAA 177

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           KL LS  T   ++     KL A +R Q +  A   G 
Sbjct: 178 KLFLSPATSKTHVSRIMSKLGARDRAQLVILAYESGI 214


>gi|218886123|ref|YP_002435444.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757077|gb|ACL07976.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 216

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +I DFL   ++ S +    L++RE   L+L  +G+ ++ IA+KL +S  TV  +  
Sbjct: 130 ISELLIEDFLRHGRRESGSLLDLLSDREKQVLKLVAEGHGNKMIADKLCISHKTVEKHKA 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL A +  + ++ AI  G 
Sbjct: 190 NLKRKLGADSTAELVSFAIEHGL 212


>gi|254228708|ref|ZP_04922131.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262396570|ref|YP_003288423.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
 gi|151938655|gb|EDN57490.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262340164|gb|ACY53958.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
          Length = 222

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT+RE   +     G ++++IAE+L +S +TV  +L +   K++  NR+QA+  A   
Sbjct: 157 LTKREKQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIEVKNRVQALIWAKEN 214


>gi|325204234|gb|ADY99687.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240355]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|325130303|gb|EGC53070.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           OX99.30304]
 gi|325136264|gb|EGC58872.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M0579]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|300918841|ref|ZP_07135409.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 115-1]
 gi|300414022|gb|EFJ97332.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 115-1]
          Length = 225

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 81  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SERVNQYLREREMFGAKEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 201 NLLRKLNVRSRVAATIL 217


>gi|146277715|ref|YP_001167874.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555956|gb|ABP70569.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 210

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L    +G V+ T+    L N +     G  Y  +    +  +   S+   LTE+E   + 
Sbjct: 100 LAAGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELARDRRQAPDSSGGRLTEKEMLVMS 159

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +G  ++EIA  L L+  T+  ++ S   KL A NR QA+  A   G I
Sbjct: 160 YLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210


>gi|1498492|gb|AAC45136.1| ORF1; homolog to response regulator of a putative signal
           transduction system [Streptomyces lividans]
          Length = 225

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 151 GACYQVITDFLELFKKRSSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLS 201
                +    +E     +  A N         LT RE   LQL   G ++ E+AE+L LS
Sbjct: 127 LLAPAITRRLVERHAHTTPPAPNTTAHRDLQTLTPRELEVLQLLAQGLSNAELAERLYLS 186

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  ++G    KL   +R+QA+  A   G +
Sbjct: 187 ETTVKTHVGRILAKLQLRDRVQAVVTAYETGLV 219


>gi|319410499|emb|CBY90860.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis WUE 2594]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|298249263|ref|ZP_06973067.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547267|gb|EFH81134.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 889

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 49/118 (41%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176
           G  F       +   ++           + +       Q + D     +  SS+   L+E
Sbjct: 772 GYVFTFTEEGAEMARLLKAVHAAQRTGSLALRLAPEYLQRLLDACAERRTSSSSHILLSE 831

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   ++L   G +++EIA+ L +++ TV  ++     KL   +R QAIA+A     +
Sbjct: 832 REREIVRLLASGLSNQEIADHLVIAMSTVKWHVRQIFNKLGVNSRTQAIAQARELNVL 889


>gi|269963001|ref|ZP_06177338.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832244|gb|EEZ86366.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 217

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L+ +++    G    +     EL  K       LT RE   L     G ++ +IA+ L +
Sbjct: 128 LSRDILNRLLGYLVNLNHTVTELDTKL---EIELTRREMQVLTALCQGGSNLDIADSLFV 184

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           S HTV ++L S   KL+  NR+QA+A A R 
Sbjct: 185 SEHTVKSHLYSIFRKLEVKNRMQAVAWAKRN 215


>gi|240170794|ref|ZP_04749453.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           kansasii ATCC 12478]
          Length = 214

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    LP   +                    G+++  S  
Sbjct: 54  DVALLDYRMPGMDGAQVAAAVRSYDLPTRVLLISAHDESAIVYQALQQGAAGFLLKDSTR 113

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++ +  A  L+ RE   L     G +   I
Sbjct: 114 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPTAPVLSAREREVLNRIARGQSIPAI 173

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL   +R  A+A+A+R G +
Sbjct: 174 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 213


>gi|168487139|ref|ZP_02711647.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|194398168|ref|YP_002038583.1| response regulator [Streptococcus pneumoniae G54]
 gi|225861819|ref|YP_002743328.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230314|ref|ZP_06963995.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255058|ref|ZP_06978644.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503771|ref|YP_003725711.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|183569979|gb|EDT90507.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|194357835|gb|ACF56283.1| response regulator TCS11 [Streptococcus pneumoniae G54]
 gi|225728123|gb|ACO23974.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239366|gb|ADI70497.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|327389165|gb|EGE87511.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 199

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|149024961|ref|ZP_01836341.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|225859757|ref|YP_002741267.1| response regulator [Streptococcus pneumoniae 70585]
 gi|147929454|gb|EDK80449.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|225720998|gb|ACO16852.1| response regulator [Streptococcus pneumoniae 70585]
 gi|301794941|emb|CBW37404.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|332200013|gb|EGJ14087.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 199

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|153004672|ref|YP_001378997.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028245|gb|ABS26013.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 44/97 (45%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +    ++++   A   +           +     LT+RE   L+L  +G +++E+AE 
Sbjct: 118 RAVNRGGLVLDPEVARTAMQDAGQATPGGAADPYEALTDREKQVLKLVAEGRSNKEVAEV 177

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+SV T  ++      KL   NR + +  A++ G I
Sbjct: 178 LGISVKTAMSHREHVMEKLQVHNRTELVRFALKKGVI 214


>gi|294053956|ref|YP_003547614.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613289|gb|ADE53444.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 118 IAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQ---VITDFLELFKKRSS 169
           I   V          +               E ++EA     +        L    +R  
Sbjct: 88  ILLSVFDSEEDIWNAVQAGVKGYLTKKAGEIEDVMEAIHEVARGGTYFPSGLAQKLERRR 147

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           + + LT+RE   L+L   G +++EI  +L LSV  V  ++ +   KLDAV+R QA+ +A 
Sbjct: 148 SQKGLTDREMEVLKLLASGLSNKEIGSELDLSVAMVKLHIINLREKLDAVDRTQAVVQAF 207

Query: 230 RFGYI 234
           + G +
Sbjct: 208 KRGIL 212


>gi|218296777|ref|ZP_03497483.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218242866|gb|EED09400.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 207

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 12/159 (7%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEF 138
               +       +   L  RL         +A  +          L     GYV   +  
Sbjct: 49  DVAILDVSLPDGTGIALCQRLRERFPELRLLALSMHEDLEYVRGFLQAGGQGYVSKAAVD 108

Query: 139 LMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
             L + V+  A         +         + S+    L+ RE   L+L   G + +E+A
Sbjct: 109 QELLDAVLAVARGERYLNPALAMRLAMELVRESAEEAPLSPREEEVLRLLAQGLSHKEVA 168

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EKLG+S  TV  Y      KL   +R + +  A R G+I
Sbjct: 169 EKLGISEKTVATYRERGMEKLGLASRSELLRYAARKGWI 207


>gi|315501316|ref|YP_004080203.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315407935|gb|ADU06052.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 225

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 18/161 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +   +         +A  V         +I           ++ E + 
Sbjct: 65  LDVHMPDGGGRAVLEAMRRTHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPEELT 124

Query: 148 EAHGACY--------QVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193
           +A             ++    L+ F  R            LT RE   L+L   GY  +E
Sbjct: 125 DAIRRVADGDAVFSPRLAGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKE 184

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA++L +S+ TV  ++ +   KL   NR +    A     +
Sbjct: 185 IAKELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 225


>gi|289704669|ref|ZP_06501097.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558623|gb|EFD51886.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 209

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  +    +A+ V   A G           L  + S  +  L+ERE   L+L
Sbjct: 99  NAGAAGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLEL 158

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T++  A++L +S  TV  +L     KL   NR +A+ +A R   I
Sbjct: 159 IARGATNKMAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208


>gi|257791938|ref|YP_003182544.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257475835|gb|ACV56155.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 258

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 135 TSEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGY 189
           + +F     E +   +              L   + +    R +LT RE     L  +G 
Sbjct: 150 SGDFTEEEEECLAVLNRHLSTCLAVAHPRGLRRDEGKPVVGRTSLTAREQEIAALIAEGL 209

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           ++++I  +L +S +TV  ++     K+   NR Q +A+  R
Sbjct: 210 SNQQIGLRLFISENTVKKHVKGIFQKMGVSNRHQLMAELYR 250


>gi|298247251|ref|ZP_06971056.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297549910|gb|EFH83776.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 222

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDF----LELFKKRSSAARNLTERETSCLQ 183
                   +    +A   I+    +  Q++       +       +    LT RE   L+
Sbjct: 110 DCSAEELCTAIRAVARGQILLQASSAAQLLASLQTKPVAAAPLSVAEQLGLTTRELEVLR 169

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L   G ++ EIA  L +S  TV  ++     KL A NR QAI KA + G 
Sbjct: 170 LVTLGQSNTEIAAALFVSDATVKTHINHIFSKLGARNRSQAIIKARQLGL 219


>gi|298249257|ref|ZP_06973061.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547261|gb|EFH81128.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L L   G ++ EI+E L ++  TV  +L +   KL   +R QA  KA   G
Sbjct: 169 QLTEREREILALLAHGASNREISEALYITGGTVKNHLSNILGKLGVRDRTQAALKARELG 228

Query: 233 Y 233
           +
Sbjct: 229 W 229


>gi|270308020|ref|YP_003330078.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270153912|gb|ACZ61750.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 224

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA   LT+RE   L++A  G ++++IA++L LS  T+  +L +   KL   +R +AI   
Sbjct: 153 SAVNPLTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNICKKLSVGSRTEAILYG 212

Query: 229 IRFGY 233
           ++ G+
Sbjct: 213 LKRGW 217


>gi|5639944|gb|AAD45903.1|AF161327_2 response regulator ChrA [Corynebacterium diphtheriae]
          Length = 199

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 44/109 (40%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + V+    G           L ++ S   + L+ RE   LQ  
Sbjct: 91  AGAMGYLLKDAPESALHDAVVATFEGRRTLAPEVANALMQRVSKPRQALSAREIEILQNL 150

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ ++A KL +S  TV  +L     KL   NR  AI  A +   I
Sbjct: 151 EQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199


>gi|301328679|ref|ZP_07221739.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 78-1]
 gi|300844929|gb|EFK72689.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 78-1]
          Length = 216

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 14/134 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 81  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQA 224
           +   KL+  +R+ A
Sbjct: 201 NLLRKLNVRSRVAA 214


>gi|290962363|ref|YP_003493545.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22]
 gi|260651889|emb|CBG75019.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22]
          Length = 234

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGY 189
           +  +  L+ + + ++ A     +++  F       +   R    LT RE   L+L   G 
Sbjct: 114 LVAAVRLVRSGDALL-APAITRRLVERFARQDAPATPRHRDLAALTPRERDVLRLLAGGL 172

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + E+A+ LGLS  TV  ++     KL   +R+QA+  A R G +
Sbjct: 173 NNAELADHLGLSEATVKTHVARILAKLGLRDRVQAVIVAYRTGLV 217


>gi|56798118|dbj|BAD82901.1| transcription factor [Pseudomonas sp. MT-1]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 17/144 (11%)

Query: 105 SVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEFLMLANEVIIEAHGACY- 154
           + R+    +    + F V               +GY++   +   L  ++ + A G    
Sbjct: 71  TRRMRDADIDARIVMFTVSDEQSHVLEALRNGADGYLLKDMDAEQLVEQIRLAATGRMAL 130

Query: 155 -----QVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                QV+ + + +  K +      +LT+RE   L+L   G +++ IA KLG++  TV  
Sbjct: 131 SPELTQVLAEAIRVRPKPTGQVPFSSLTKREKEVLRLIAKGQSNKMIARKLGITEGTVKV 190

Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231
           ++ +   KL   +R++A    +  
Sbjct: 191 HVKNLLHKLGLRSRVEAAVWVLEN 214


>gi|84387407|ref|ZP_00990426.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84377660|gb|EAP94524.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 227

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                   T     + ++ +         ++++      K      NLT+RE    +   
Sbjct: 112 QDAPIEHLTRCLKTVCDDDLWLPRKLMSHILSNACSYTFKSQVILSNLTKREAQIFKRVV 171

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            G ++ EI+ +L +S  TV  ++ +   K++  NR +AI KA 
Sbjct: 172 RGDSNLEISSELFISESTVKTHVYNIYKKINVTNRKEAIRKAH 214


>gi|326772247|ref|ZP_08231532.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638380|gb|EGE39281.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 230

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 19/172 (11%)

Query: 82  SGLLP-IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL- 139
               P ++   ++       +    +  E      A +              +       
Sbjct: 59  RATRPDVVCMDLRMSEGDGLTATRQIVAEREGGVPAVLVVTTFDMDADVFGALEAGADGF 118

Query: 140 ---MLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARN------LTERETSCL 182
                  E +++A              V    +  F +R     N      LTERE   +
Sbjct: 119 ILKDCEPEELVDAVRRLASGYGLVDQSVTRRVIAEFARRQGRVENREALGVLTEREREVV 178

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           QL   G ++ EIA +L +   TV ++L     K+ A +R+QA+  A R G +
Sbjct: 179 QLLAGGMSNAEIAAELVVETSTVKSHLTRILPKIGARDRVQAVVWAFRNGLV 230


>gi|312960102|ref|ZP_07774614.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311285596|gb|EFQ64165.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 498

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194
               EV+ +A      +I          S    N     LT RE   L L  +G   +EI
Sbjct: 389 AAIEEVMQDASWFSQTLIEKLANAKSVNSPNLPNISYTDLTARERDVLGLICEGLADKEI 448

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L L+ +TV  ++ +   KL   +R  AI  A   G 
Sbjct: 449 ASRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 487


>gi|262203966|ref|YP_003275174.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087313|gb|ACY23281.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 230

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 43/105 (40%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +  +   +L+  V                            LTERET  ++L  DG
Sbjct: 118 RAVRVIAAGDALLSPSVTRRLISRFADAGRSPTTPVTPGGGPVSALTERETEVVRLVADG 177

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++EEIA++  +S  TV  ++  A  KLDA +R Q +  A R G 
Sbjct: 178 LSNEEIAQRWVVSNATVRTHVSRAMTKLDARDRAQLVVFAYRLGL 222


>gi|206601912|gb|EDZ38394.1| Putative two component transcriptional regulator, LuxR family
           [Leptospirillum sp. Group II '5-way CG']
          Length = 211

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 14/172 (8%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P+    +      ES    +  L         + + V     +        
Sbjct: 40  LRTLVDRKAPVDVVVMDIGLPGESGISATRVLRQARPEVRVVMYTVHRVEAEIFSSFSAG 99

Query: 137 EFLMLANEVIIEAHGACYQVIT----------DFLELFKKRSSAAR----NLTERETSCL 182
                  +  +++     +               L L + R          L+ RET  L
Sbjct: 100 ADGYCLKDTTVDSLLLAIRAADMGSVYLDPAIAHLALNRIRLPGHPENDNPLSPRETEIL 159

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L   G ++ EI +  G+S+ TV A++ S   KL A  R  A  KAI+ G I
Sbjct: 160 KLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVKAIKKGLI 211


>gi|254227764|ref|ZP_04921195.1| HTH DNA binding domain family [Vibrio sp. Ex25]
 gi|262395807|ref|YP_003287660.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25]
 gi|151939806|gb|EDN58633.1| HTH DNA binding domain family [Vibrio sp. Ex25]
 gi|262339401|gb|ACY53195.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25]
          Length = 210

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 11/138 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156
              L         +   V         ++ +            + ++E     +Q     
Sbjct: 68  LQALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAY 127

Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              ++ +L     +      LT+RET  L+    G+ +++IA++L +S  TV  ++ S  
Sbjct: 128 SQEVSKYLSERSGQEDVFDTLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLL 187

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   +R  A    +  
Sbjct: 188 KKLQVPSRTAATVLYLER 205


>gi|15595730|ref|NP_249224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099520|ref|ZP_01363438.1| hypothetical protein PaerPA_01000532 [Pseudomonas aeruginosa PACS2]
 gi|218889274|ref|YP_002438138.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|296387037|ref|ZP_06876536.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313111834|ref|ZP_07797627.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
 gi|9946400|gb|AAG03922.1|AE004490_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218769497|emb|CAW25257.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310884129|gb|EFQ42723.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
          Length = 496

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITD 159
              G     +  A  +         ++  S+      E+       + +A      +I  
Sbjct: 348 DRNGLDCLVSAEAVSLNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEK 407

Query: 160 FLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
              + +  +        +LT RE     L   G   +EIA++LGL+ +TV  ++ +   K
Sbjct: 408 LANVRRANAPGTGAELADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAK 467

Query: 216 LDAVNRIQAIAKAIRFGY 233
           LD  +R +AI  A   G+
Sbjct: 468 LDVHSRGEAIVWARERGF 485


>gi|294628631|ref|ZP_06707191.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292831964|gb|EFF90313.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 213

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSS--AARNLTERE 178
           +R G     Y     E L  A   +   H     +V    L   + +S      +LTERE
Sbjct: 97  LRAGAAGYVYKDVDPEALAGAIRSVHAGHILLQPEVAGALLSQEEAQSGLGRGGSLTERE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210


>gi|238064526|ref|ZP_04609235.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237886337|gb|EEP75165.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 229

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 +      +       A   LTERE   L     G ++ EIA +L +S  TV  +
Sbjct: 140 LKRLLDRFADALPDPAATPPKALNALTEREREVLVQVARGLSNAEIARELTVSETTVKTH 199

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G    KL   +R+QA+  A   G +
Sbjct: 200 VGHVLTKLGLRDRVQAVVFAYESGLV 225


>gi|284034798|ref|YP_003384729.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283814091|gb|ADB35930.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 216

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                R +    LT RE   L L G G ++ EIA  L +S HTV  ++ +   KL   +R
Sbjct: 140 RPRAGRVAELDALTSREREILLLLGRGLSNAEIAAALTVSEHTVKTHVSNTLTKLGLRDR 199

Query: 222 IQAIAKAIRFGYI 234
           +QA+  A   G I
Sbjct: 200 VQAVIAAYETGLI 212


>gi|254421507|ref|ZP_05035225.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196188996|gb|EDX83960.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 101

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 42/72 (58%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +   SA  +L++RE   ++L   G T++EI+++L +S  TV+ ++ +   K  A NR+ 
Sbjct: 16  DEVIESAQHDLSKRELEIVELVAAGLTNQEISQRLEISKRTVDNHVSNILSKTAAGNRVA 75

Query: 224 AIAKAIRFGYIC 235
            +  A++ G +C
Sbjct: 76  LVRWALQSGKVC 87


>gi|327404862|ref|YP_004345700.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327320370|gb|AEA44862.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L     G +   IA++L +S HTV  ++ +   KL   ++++A+  A++  
Sbjct: 157 PLSSREMDILNCLAQGKSYTIIADELFISPHTVRKHMTNIYEKLHVNSKVEAVRLAMQKK 216

Query: 233 YI 234
           ++
Sbjct: 217 WV 218


>gi|306832945|ref|ZP_07466077.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|325977686|ref|YP_004287402.1| nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|304424844|gb|EFM27978.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|325177614|emb|CBZ47658.1| Nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 198

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    L+++E   LQL   G T++EIA+ L LS  TV  Y+ S   KL A NR
Sbjct: 126 ELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNR 185

Query: 222 IQAIAKAIRFGYI 234
           ++A   A   G++
Sbjct: 186 VEAARIAEEHGWV 198


>gi|167464268|ref|ZP_02329357.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383996|ref|ZP_08057726.1| two-component response regulator YfiJ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151473|gb|EFX44660.1| two-component response regulator YfiJ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
           ++++    L   +EV  +            ++  ++  S +  LT RET  +     GY 
Sbjct: 116 WLLYLHALLDDNSEVARKMADRIMSQFRSPVKGTEQDPSPS-VLTARETEIVAHVSKGYN 174

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +++IA +L +S +TV  ++ +   KL+  NR+Q  A A++   
Sbjct: 175 NKQIALRLSISENTVKNHMKNILDKLNLENRVQLTAYAVKHQL 217


>gi|302561410|ref|ZP_07313752.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302479028|gb|EFL42121.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 188

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERE 178
           +R G     Y     + L  A   +   H      +   L   ++       A  LTERE
Sbjct: 72  LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQAEVAGALLSQEEAGPGTGRAGALTERE 131

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG  + EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 132 REVLGLIADGRANREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 185


>gi|302537766|ref|ZP_07290108.1| two component system DNA binding response regulator [Streptomyces
           sp. C]
 gi|302446661|gb|EFL18477.1| two component system DNA binding response regulator [Streptomyces
           sp. C]
          Length = 209

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 51/109 (46%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    LA  V   A G         L L  +  + A  LT+RE   LQL 
Sbjct: 98  AGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLV 157

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++++I+++L LS  TV ++L     KL   +R  A+A A     I
Sbjct: 158 ADGLSNQQISKRLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLI 206


>gi|149925599|ref|ZP_01913863.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825716|gb|EDM84924.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 237

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +  S  A ++T+RE   +Q    G+T++EIA ++G+S HTV  ++     KL   +R 
Sbjct: 164 AEQDESQKACSITDRELKVIQQVARGFTAQEIAAQMGISTHTVATHVKRIYKKLHVHSRS 223

Query: 223 QAIAKAIRFGYI 234
           +A+ +A   G +
Sbjct: 224 EAVYEATLLGLL 235


>gi|29832148|ref|NP_826782.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609266|dbj|BAC73317.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 154 YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            ++I   L       +AA     L+ RE   L L   G  + EIAE LGLS  T   ++ 
Sbjct: 137 ARLIARLLRTPVPPPAAAVGPECLSGREREVLTLVARGLNNTEIAESLGLSPLTAKTHVS 196

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL A +R Q +  A   G +
Sbjct: 197 RIMGKLGARDRAQLVIVAYESGLV 220


>gi|168492022|ref|ZP_02716165.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183573661|gb|EDT94189.1| response regulator [Streptococcus pneumoniae CDC0288-04]
          Length = 199

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    LTE+E + L+    G +++EIA++L LS  T+  Y+ +   KLDA NR
Sbjct: 127 ELMEVMMTHPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A   A   G++
Sbjct: 187 TEAANIAKESGWL 199


>gi|156976380|ref|YP_001447286.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116]
 gi|156527974|gb|ABU73059.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 150 HGACYQVITDFLELFKKRS------SAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +    +++   L  +K +        A    LT RE   LQ+  DG ++ EIA+ L +S 
Sbjct: 129 NWLSRRLLDQLLTYYKGKESNYIIEPAIEVELTRREVQVLQMLKDGGSNMEIADSLFISE 188

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           HT+ ++L +   K++  NR QA + A R 
Sbjct: 189 HTIKSHLYNIFRKIEVKNRTQATSWAKRN 217


>gi|15677121|ref|NP_274273.1| LuxR family transcriptional regulator [Neisseria meningitidis MC58]
 gi|218768252|ref|YP_002342764.1| putative two-component system response regulator [Neisseria
           meningitidis Z2491]
 gi|7226490|gb|AAF41630.1| transcriptional regulator, LuxR family [Neisseria meningitidis
           MC58]
 gi|121052260|emb|CAM08585.1| putative two-component system response regulator [Neisseria
           meningitidis Z2491]
 gi|325140520|gb|EGC63041.1| transcriptional regulatory protein DegU [Neisseria meningitidis
           CU385]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|84394370|ref|ZP_00993090.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84374999|gb|EAP91926.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 229

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +    +LT RE   ++    G ++ +IA+ L +S  TV ++L     KL   NR+QAIA 
Sbjct: 163 TPTNVDLTIRELQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 222

Query: 228 A 228
           A
Sbjct: 223 A 223


>gi|325270893|ref|ZP_08137480.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324986690|gb|EGC18686.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 246

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 3/151 (1%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
             +    +  V+     L+  +        G    V         ++  ++   +   + 
Sbjct: 89  FDFSGAADLLVLGQRYPLAHLVLWSEELSVGFIRSVVSASGLVSVLMKDAKLPEIEQCLD 148

Query: 147 IEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
              H     C       L   +        LT+ ET  L+    G T+ EIAEK   S H
Sbjct: 149 YVLHGRRFLCQHAAGLLLTPAETPDRETVKLTKTETEILKEIALGMTTREIAEKRFSSFH 208

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TVN +  +   KL   +  +A+  A+R G +
Sbjct: 209 TVNTHRKNIFRKLGVNSVHEAMRYAMRSGLV 239


>gi|302545230|ref|ZP_07297572.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462848|gb|EFL25941.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARN---LTERETSCL 182
                       ++A    + A     ++I +F        R+        LTERET  L
Sbjct: 109 DASAEELAHAVRVVAAGDALLAPNITKRLIAEFSRVTAAAPRAPLKDRVGDLTERETEVL 168

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   G ++ EIA +L ++  TV  ++G   +KL   +R QA   A   G +
Sbjct: 169 ALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVFAYESGLV 220


>gi|227497046|ref|ZP_03927297.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833464|gb|EEH65847.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 222

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERE 178
               GY++  S    +A  V     G          +++          S  A  L+ RE
Sbjct: 104 AGATGYLVKDSPREDIAGAVRSAVRGYSAMSPAVTTRILAATRRSAAAPSDTAPALSPRE 163

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L     G ++ +IA +L +S  TV  +L     KL   +R  A+ +A+R G I
Sbjct: 164 REVLAAVARGMSNAQIARELLISEATVKTHLLRVNNKLGVDSRTGAVMEALRQGLI 219


>gi|182413518|ref|YP_001818584.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840732|gb|ACB74984.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 213

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                I   +      S   +++T RE   LQLA +G ++ EIAEKL +S  T   +  +
Sbjct: 129 LSEWAINALVTKPADNSDPLQSITPRERMVLQLAAEGASNSEIAEKLFISPRTAETHRTN 188

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL    +   +  AIR G I
Sbjct: 189 LLRKLGLQTQTDLVRFAIRKGLI 211


>gi|311113859|ref|YP_003985081.1| DegU family transcriptional regulator [Rothia dentocariosa ATCC
           17931]
 gi|310945353|gb|ADP41647.1| transcriptional regulatory protein DegU [Rothia dentocariosa ATCC
           17931]
          Length = 241

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L+ RE   L+L   G ++ EI+  L LS  T+  ++     KLDA +R+QA+  A   
Sbjct: 178 QTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLSKLDARDRVQAVIMAYEA 237

Query: 232 GYI 234
           G +
Sbjct: 238 GIV 240


>gi|302552999|ref|ZP_07305341.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302470617|gb|EFL33710.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 221

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +++   L     +A  +LTERET  L L   G ++ EIAE+L ++  T+  ++    VKL
Sbjct: 141 LSETPRLMPSAQAAYGDLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKL 200

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA   A     +
Sbjct: 201 GLRDRTQAAVFAYEARLV 218


>gi|238027839|ref|YP_002912070.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877033|gb|ACR29366.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 250

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 9/232 (3%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + +     L   +  +   +    FA   + +     +R      L +            
Sbjct: 20  EHAPDRAALRTIVTRLIRPLGGERFAFLLMPADGAAHQRLDDDAVLTDAAPGWLAGYRER 79

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  + +      P    SI                +      A +  P  L    
Sbjct: 80  RGFDADPGIAYARRASTPTTAGSI---APQTDGQLALRTHDAAHGFGAKLIVPAHLPTLN 136

Query: 129 NGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
            G V++                  +       +++       ++ ++ +  LTERET  L
Sbjct: 137 LGGVLYVGSGAPAREAEPALHAKRMLFRLIANELLDWHARQIRRDAARSLALTERETGIL 196

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L   GYT+  IA++L ++V TV  Y      K    +    + +A   G +
Sbjct: 197 RLLRSGYTAHNIAKELSVAVPTVYGYYKRLNEKFSVNHISLTVKRAATLGLL 248


>gi|316985109|gb|EFV64062.1| transcriptional regulatory protein degU [Neisseria meningitidis
           H44/76]
 gi|325200119|gb|ADY95574.1| transcriptional regulatory protein degU [Neisseria meningitidis
           H44/76]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|313895153|ref|ZP_07828710.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529859|ref|ZP_08030936.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas artemidis F0399]
 gi|312976048|gb|EFR41506.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137877|gb|EFW29782.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas artemidis F0399]
          Length = 223

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 146 IIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           + E       V  D   + K+    S    LT RE   L     G ++++I + LGLS  
Sbjct: 130 LAERLFGSTAVYGDVSRMAKEIWDESRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEK 189

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +L S   KL   +R QA+   ++   +
Sbjct: 190 TVKNHLTSIFHKLKVNDRTQALVYVLKNKIV 220


>gi|300855110|ref|YP_003780094.1| putative regulatory protein [Clostridium ljungdahlii DSM 13528]
 gi|300435225|gb|ADK14992.1| predicted regulatory protein [Clostridium ljungdahlii DSM 13528]
          Length = 885

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++RE   L L   G  + EIA++L ++  T  +++ +   KL   NRI+A+AKA   G I
Sbjct: 826 SKREREVLMLIEKGAKNSEIAKRLFITESTAKSHILNIFSKLSVRNRIEAVAKAKEIGII 885


>gi|291006817|ref|ZP_06564790.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 215

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 45/113 (39%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR G          +  L+ A   +     A        +       S+   LTERE   
Sbjct: 103 VRRGARGYVVKDVDTTELVRAIRAVARGESAFDSRSAAAMVHSMNNRSSEPELTERELGV 162

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G ++ +I  +L +S  T   ++ +   KLD   R +A+ +A + G I
Sbjct: 163 LRLLAAGSSNRQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 215


>gi|255324096|ref|ZP_05365220.1| response regulator, two-component system [Corynebacterium
           tuberculostearicum SK141]
 gi|255298797|gb|EET78090.1| response regulator, two-component system [Corynebacterium
           tuberculostearicum SK141]
          Length = 212

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  +   +LT RE   LQL   G ++ +I + L LS  TV ++L     KL   +R
Sbjct: 140 RLMTRVRTPRTSLTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSR 199

Query: 222 IQAIAKAIRFGYI 234
             A+A A   G +
Sbjct: 200 TSAVAAAREQGVL 212


>gi|241765736|ref|ZP_04763682.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241364396|gb|EER59519.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 301

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 45/151 (29%), Gaps = 16/151 (10%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                     +W           +    ++   G      I  P+  G  + G     + 
Sbjct: 159 RIAWCSPQAALWLDSSFADQAPQARADWLQSASGAGE---IFMPMPGG-GRLGARHLGAS 214

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L  +             ++                LT RET  L     G T+ +IA+ 
Sbjct: 215 GLTES------------MLLLRLAAADTPPRQPEVPLTPRETEVLAWLAKGKTNRDIADI 262

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LG+S  TVN +L     KL    R  A A A
Sbjct: 263 LGMSPRTVNKHLEHIFEKLGVETRSAATAVA 293


>gi|291295457|ref|YP_003506855.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470416|gb|ADD27835.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 209

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 10/152 (6%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148
                         ++         +         K    +           +  E +  
Sbjct: 54  DLRMPQMDGVAAIRQVRARFPRVQILVLTTYDTDSKIVRAVEAGATGYLLKDVPREELFR 113

Query: 149 AHGACYQVIT------DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           A   C +             L + R +A   L+ RE   L L   G++++EIA +L +S 
Sbjct: 114 AVRLCAKGEAVLSPPVAARLLGRMRGTAEETLSVRELEVLALVAKGFSNKEIARELKISE 173

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  +L     KL   +R  A+  AI  G +
Sbjct: 174 ATVKTHLLHTFEKLGVDDRTAAVTVAIERGIL 205


>gi|187779787|ref|ZP_02996260.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC
           15579]
 gi|187773412|gb|EDU37214.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC
           15579]
          Length = 865

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 41/70 (58%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            I + +++ +     A  LTERE   +++  +G ++++I E+L +S+ TV  ++ +   K
Sbjct: 785 FIKNLIDIMEPEKIKAELLTEREKEVMEILFEGASNKQIGERLNISLATVKTHMINIYSK 844

Query: 216 LDAVNRIQAI 225
           L   NR+QA+
Sbjct: 845 LQVSNRVQAV 854


>gi|184201824|ref|YP_001856031.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183582054|dbj|BAG30525.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 299

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE    +L G+G ++ EI ++L LS  TV  ++     KLDA +R+QA+  A
Sbjct: 231 PRLGTLTAREREVFELIGEGCSNGEIMQRLFLSEPTVKTHVSHILSKLDARDRVQAVVIA 290

Query: 229 IRFGYI 234
              G +
Sbjct: 291 YETGVV 296


>gi|163938916|ref|YP_001643800.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861113|gb|ABY42172.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 214

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  NLT++E   L+    GY ++EIA  +G++  TV AYL +   KL   +R +A+A +I
Sbjct: 148 AENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 207

Query: 230 RFGYI 234
               I
Sbjct: 208 ERKLI 212


>gi|330470066|ref|YP_004407809.1| regulatory protein LuxR [Verrucosispora maris AB-18-032]
 gi|328813037|gb|AEB47209.1| regulatory protein LuxR [Verrucosispora maris AB-18-032]
          Length = 228

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 18/161 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +   +         +A  V         +I           ++ + + 
Sbjct: 68  LDVHMPDGGGRAVLEAMRRSHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELA 127

Query: 148 EAHGA--------CYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193
            A             ++    L+ F  R            LT RE   L+L   GY  +E
Sbjct: 128 AAIRRVADGDAVFSPRLAGFVLDAFAARPDAPVADPELDQLTNREREVLRLLARGYAYKE 187

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA +L +S+ TV  ++ +   KL   NR +    A     +
Sbjct: 188 IARELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 228


>gi|325134502|gb|EGC57147.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M13399]
 gi|325205973|gb|ADZ01426.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M04-240196]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|295689487|ref|YP_003593180.1| LuxR family two component transcriptional regulator [Caulobacter
           segnis ATCC 21756]
 gi|295431390|gb|ADG10562.1| two component transcriptional regulator, LuxR family [Caulobacter
           segnis ATCC 21756]
          Length = 207

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 5/144 (3%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
               E   ++     + L         ++    L    +GY++ +S    L +   I A 
Sbjct: 67  EAIREIRAQAPDARIIVLTTYAGDVRALS---ALRAGASGYLLKSSLRRELIDT--IRAV 121

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               + +   +      ++ A  L+ERE   L+   +G  ++EIA  L LS  TV  ++ 
Sbjct: 122 LGGQRYLHPEVAHDIAVNAIAEPLSEREIDVLKRVANGAANKEIARALSLSEDTVKGHMR 181

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KLD  +R QA+  A R G I
Sbjct: 182 SIFSKLDVTDRTQAVTVAHRRGII 205


>gi|161870093|ref|YP_001599263.1| two-component system, NarL family nitrate/nitrite response
           regulator [Neisseria meningitidis 053442]
 gi|161595646|gb|ABX73306.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria meningitidis 053442]
 gi|254673916|emb|CBA09700.1| putative two-component system response regulator [Neisseria
           meningitidis alpha275]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|326329284|ref|ZP_08195609.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325952859|gb|EGD44874.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 231

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%)

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  +   +      + +++ E   +                 AG A  +         V+
Sbjct: 67  DLRMRQVDGITATGLVRALPEAPPVLVLTTFDEDELVSGALRAGAAGFILKDSPAEELVM 126

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                 +    +     G         +     R+     LT+RE   L+    G+T+ E
Sbjct: 127 AVRSVALGDAWLDPAITGRVLATYRSAVAPPASRAVEVSELTDRELEVLRGLASGWTNSE 186

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IAE+L +S  TV +++G    KLD  +R  AI  A   G +
Sbjct: 187 IAERLVISELTVKSHIGRIFAKLDLRDRAAAIVFAYDHGIV 227


>gi|298249219|ref|ZP_06973023.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297547223|gb|EFH81090.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1032

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 129  NGYVIFTSEFLMLANEVIIEAHGACYQVIT---DFLELFKKRSSAARNLTERETSCLQLA 185
               +   + F   + + +     A         D       RS+    L+ RE S LQL 
Sbjct: 921  AHLLTRIAPFTTASPDYLQRIQAAIAPAWHTQPDPSTQAGPRSTPYEPLSARERSVLQLM 980

Query: 186  GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +GY++++IAE L LS+HTV  ++     KL A NR QA+A+A     +
Sbjct: 981  AEGYSNQQIAEHLILSLHTVKLHVKHLLAKLGATNRTQAVARARALHIL 1029


>gi|297160873|gb|ADI10585.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQ 183
                   S   ++A    + A     ++I DF           ++    LT RET  L+
Sbjct: 110 DAPPADLISAVRIVAAGEALLAPSVTRRLIADFARQRPAPRKNFAARRSGLTPRETEVLE 169

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G +++EIAE L L+  TV  ++G    KL   +R QA+  A   G +
Sbjct: 170 LIARGLSNQEIAESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLV 220


>gi|296130230|ref|YP_003637480.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022045|gb|ADG75281.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 239

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +  ++   +  H                   A   LTERE   L L   G ++ EI + L
Sbjct: 140 IAPSSTRRLLEHLVTALPGDAPAATADPAHQAVAQLTEREREVLVLMARGRSNTEIGQDL 199

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  TV  ++G    KL A +R+QA+  A   G +
Sbjct: 200 FVAEATVKTHVGRILAKLGARDRVQAVVVAYEAGLV 235


>gi|229056740|ref|ZP_04196143.1| Sensory transduction protein ydfI [Bacillus cereus AH603]
 gi|228720587|gb|EEL72150.1| Sensory transduction protein ydfI [Bacillus cereus AH603]
          Length = 207

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLTE+E   L+    GY ++EIA  +G++  TV AYL +   KL   +R +A+A +I   
Sbjct: 144 NLTEKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 203

Query: 233 YI 234
            I
Sbjct: 204 LI 205


>gi|284029985|ref|YP_003379916.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809278|gb|ADB31117.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    LT RE   L L   G ++++IAE++ LS  T   ++  A  KL A +R Q +  
Sbjct: 149 TAGLELLTPREREVLALVAHGLSNDQIAERMVLSPTTAKTHVSRAMSKLQARDRAQLVVI 208

Query: 228 AIRFGYI 234
           A + G +
Sbjct: 209 AYQSGLV 215


>gi|307150361|ref|YP_003885745.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306980589|gb|ADN12470.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 224

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 149 AHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           AH   + + +    +    +  A   L+ERE   L+L  +G+++++IAE+L LS  T+ +
Sbjct: 138 AHKVSHLLKSGSFAVETNTTPKAVTVLSERERLILKLIAEGFSNKKIAEQLFLSPGTIKS 197

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y+     KL   +R+QA AKA+R G I
Sbjct: 198 YVRMLLNKLSVDDRVQAAAKAVREGLI 224


>gi|195977721|ref|YP_002122965.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225868974|ref|YP_002744922.1| response regulatory protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|195974426|gb|ACG61952.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225702250|emb|CAX00006.1| response regulatory protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 198

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +        L+++E + L L   G TS+EI++ L LS  T+  Y+ S   K    NR
Sbjct: 126 ELMENIVVNPNPLSKQEMNILYLIAQGKTSKEISQILFLSNGTIRNYISSIFNKFGVSNR 185

Query: 222 IQAIAKAIRFGYI 234
           ++AI+ A   G++
Sbjct: 186 MEAISLAKENGWL 198


>gi|89900655|ref|YP_523126.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345392|gb|ABD69595.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 231

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            A  +L+ RE   L+    G +++EI  + G++  TV  ++     KLD  +R+ A   A
Sbjct: 166 PAMASLSPRERDILRGIARGASNKEIGREHGIAETTVKIHVQHILRKLDVSSRVHAAVIA 225

Query: 229 IRFGYI 234
              G +
Sbjct: 226 TEQGLL 231


>gi|254237247|ref|ZP_04930570.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719]
 gi|126169178|gb|EAZ54689.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719]
          Length = 496

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITD 159
              G     +  A  +         ++  S+      E+       + +A      +I  
Sbjct: 348 DRNGLDCLVSAEAVSLNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEK 407

Query: 160 FLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
              + +  +        +LT RE     L   G   +EIA++LGL+ +TV  ++ +   K
Sbjct: 408 LANVRRANAPGTGAELADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAK 467

Query: 216 LDAVNRIQAIAKAIRFGY 233
           LD  +R +AI  A   G+
Sbjct: 468 LDVHSRGEAIVWARERGF 485


>gi|254421396|ref|ZP_05035114.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188885|gb|EDX83849.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 152 ACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                +   LE  K         LT RET  L   G+G +++EIA++L LS  TV  ++ 
Sbjct: 154 RASSALDTSLEANKVDLPPEVAALTPRETEVLVCIGNGASNKEIAQQLFLSEGTVKNHVT 213

Query: 211 SATVKLDAVNRIQAIAKA 228
           S   +L   +R QA   A
Sbjct: 214 SVLSRLGLRDRTQAALLA 231


>gi|204929147|ref|ZP_03220290.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321691|gb|EDZ06890.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 215

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDSVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|159901957|gb|ABX10688.1| two-component system response regulator [uncultured planctomycete
           8FN]
          Length = 210

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+    G T++EIA  L +S  TV  ++ +   K+   +R QA   A R G
Sbjct: 149 PLTAREAEVLKHLTSGKTNKEIANSLTISYETVKEHVQNILRKIGVTDRTQAAVWAFRKG 208

Query: 233 YI 234
            +
Sbjct: 209 IV 210


>gi|86608341|ref|YP_477103.1| LuxR family transcriptional regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556883|gb|ABD01840.1| transcriptional regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 87

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ERE   ++L   G T+++IAE+L +S  TV+ ++ +   K    NR+  +  A++
Sbjct: 8   ADLLSERELQVIELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTANRVALVRWALQ 67

Query: 231 FGYIC 235
           +G IC
Sbjct: 68  WGKIC 72


>gi|21224033|ref|NP_629812.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7801256|emb|CAB91120.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 237

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V      L      AA +LT RET  L L   G ++ EIA +L ++ HTV  ++ 
Sbjct: 145 LIAEFVHARGSRL---PVPAAGDLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHIN 201

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+  +R QA+  A   G +
Sbjct: 202 RLFAKLELRDRAQAVIVAYELGLV 225


>gi|311103299|ref|YP_003976152.1| sensory box protein 1 [Achromobacter xylosoxidans A8]
 gi|310757988|gb|ADP13437.1| sensory box protein 1 [Achromobacter xylosoxidans A8]
          Length = 499

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 63/240 (26%), Gaps = 18/240 (7%)

Query: 13  SLQELSPRLHL--IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +  +L PR          + R    + +                 N    +    +    
Sbjct: 248 TFNDLEPRRKAESALRHSEQRFATAFRLAPVPMTLSSTTGELLEVNDAFVATTGYDARTL 307

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              +D L    +            E       Q              +     +      
Sbjct: 308 ARDEDALAQLWTDPQAYDRAMASLEQGASVRSQEMALRTREGALLDCLVSAAPVSIQDQP 367

Query: 131 YVIFTSEFLMLANEVIIEA-----------HGACYQVITDFLELFKKRSSAARN-----L 174
            V+   + +       +E                  VI    ++   + +         L
Sbjct: 368 CVLAAIQDITERKRSEVELMEAIETVMQDTSWFSRTVIEKLAQIRAPQGAPQEQGELADL 427

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   G+T  EIA  L LS +TV  ++ +   KLD   R  AI  A + G +
Sbjct: 428 TPREREILGLMCQGHTDAEIAASLHLSRNTVRNHVAALYSKLDVHRRSAAIIWARQRGIV 487


>gi|182439488|ref|YP_001827207.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780152|ref|ZP_08239417.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468004|dbj|BAG22524.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660485|gb|EGE45331.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 214

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERE 178
           +R G     Y     + L  A   +   H      +   L         +     LTERE
Sbjct: 98  LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQDDAGTGTGRGSTLTERE 157

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L L  DG ++ EIA    LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 158 REVLGLIADGRSNREIARAFVLSEKTVKTHVSNILMKLDVADRTQAALWAVRNG 211


>gi|159900998|ref|YP_001547245.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894037|gb|ABX07117.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 213

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +     +       S   +LTERE S L     G +++EIA  L L+  TV  Y+ 
Sbjct: 127 FLHAEAQRTLMRQSTAPPSLLPSLTERERSVLDGIVGGLSNKEIARSLHLTEGTVKGYVS 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +R QA   AI+ G+
Sbjct: 187 TILTKLAVADRTQAALYAIKHGF 209


>gi|328542259|ref|YP_004302368.1| transcriptional regulator, LuxR family [polymorphum gilvum
           SL003B-26A1]
 gi|326415691|gb|ADZ72754.1| Transcriptional regulator, LuxR family [Polymorphum gilvum
           SL003B-26A1]
          Length = 255

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/187 (9%), Positives = 48/187 (25%), Gaps = 7/187 (3%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           +++++         +    F  +            +    L  +     +          
Sbjct: 1   MEDVASLEAAFSKALWDLGFREWAYQVIRTDALPDEKPLILTTFSDAWYNHYIDSGYHRV 60

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  + +  + + P  W ++          +             G+  P+           
Sbjct: 61  DPVILNGPNQVAPFTWSAMSFGVDPSPEQRRLFAEAAEFGVGEGVGIPIHGARGALAMAS 120

Query: 134 FTSEFLMLANEVII-----EAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAG 186
             S+  +   + ++     + H           EL    +      +LT RE  CL    
Sbjct: 121 MVSDHGVEGLDRLMSTVGQDVHLLSLAFHNHARELLALGRMGRTTVSLTPRERECLLWTA 180

Query: 187 DGYTSEE 193
            G ++ +
Sbjct: 181 AGKSAWQ 187


>gi|289669083|ref|ZP_06490158.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 213

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L L   G ++++I   L +S  TV A++ +   KL   +R  A+  A+R 
Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALRR 206

Query: 232 GYI 234
           G +
Sbjct: 207 GIL 209


>gi|256395415|ref|YP_003116979.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361641|gb|ACU75138.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 217

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              +++  F    + + +A    A  LT RE   +++   G ++EE+A +L +   TV  
Sbjct: 130 IAQRLVGWFRAQPEPQEAAMCPGASELTSREREVVRMVARGMSTEEVARELIIGEATVRT 189

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++     KL   +R + ++ A R G I
Sbjct: 190 HVYRVRTKLGVRDRAELVSLAYRSGLI 216


>gi|209527179|ref|ZP_03275692.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209492428|gb|EDZ92770.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 208

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 145 VIIEAHGACYQVITDFLEL-FKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKL 198
            I  A+     +      L  +             L+ RE   L+L  +G ++ EIAE L
Sbjct: 113 AIQAAYEGATYLDPQVARLVMEHLKPPLPQSNLGTLSPRELEVLKLMVEGKSNPEIAEAL 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS +T+  ++     KL   +R+     A+R G +
Sbjct: 173 YLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208


>gi|326382104|ref|ZP_08203797.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199530|gb|EGD56711.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 213

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 12/144 (8%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---- 154
           +L   +       A +     L        +           +    +I A         
Sbjct: 70  RLIREIARRHPGVASLVLTTFLDDDVVVRAVRAGAKGYVVKDVDTTELIRAIRTVSNGGS 129

Query: 155 ----QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +     L        +   LT+RE   L+L  DG ++ E+   L +S  TV  ++ 
Sbjct: 130 AFDPRSAAIVLRTVSGEQESTATLTDREHEVLKLLADGKSNAEVGRALFISESTVKFHIR 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL    R  A+  A + G I
Sbjct: 190 NVIRKLGVTKRTDAVYVASKRGLI 213


>gi|315182035|gb|ADT88948.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC
           11218]
          Length = 207

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           + +        + I  +       +S A   LT RE   ++L G G ++ EIA+KL +S 
Sbjct: 112 DEMWLTRKLAQEYIMHYRAGAPAVTSQAYTKLTRREQQIIKLLGSGASNIEIADKLYVSE 171

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228
           +TV  +L +   K++A NR+QA+  A
Sbjct: 172 NTVKTHLHNVFKKINAKNRLQALIWA 197


>gi|312130002|ref|YP_003997342.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311906548|gb|ADQ16989.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 219

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++LT RE   ++L  +  ++ +IAE L ++  TV  +  +   KL   + +  I   +++
Sbjct: 154 KSLTRREKEIIRLVAEDMSNAQIAETLHIAPTTVETHRRNLMKKLGVNSAVALIKLGMKY 213

Query: 232 GYI 234
           G I
Sbjct: 214 GII 216


>gi|260769964|ref|ZP_05878897.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972]
 gi|260615302|gb|EEX40488.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972]
          Length = 223

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           + +        + I  +       +S A   LT RE   ++L G G ++ EIA+KL +S 
Sbjct: 128 DEMWLTRKLAQEYIMHYRAGAPAVTSQAYTKLTRREQQIIKLLGSGASNIEIADKLYVSE 187

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228
           +TV  +L +   K++A NR+QA+  A
Sbjct: 188 NTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|225021584|ref|ZP_03710776.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681229|ref|ZP_07404036.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945575|gb|EEG26784.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659434|gb|EFM48934.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 215

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178
               G ++  S    L   V   A G          +VI +F       +S++  LT RE
Sbjct: 99  AGACGILLKDSSMTDLVEGVRRAALGEGLVDASLTRRVIAEFTRRKSIFTSSSEVLTPRE 158

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             C+     G ++ EIA  L L   TV  +L SA  K    NR+Q +  A R G +
Sbjct: 159 LDCVAQLCQGMSNNEIATTLFLEPSTVKTHLSSAMAKTGTHNRVQLVIWAFRNGVV 214


>gi|126736492|ref|ZP_01752233.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. CCS2]
 gi|126714030|gb|EBA10900.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. CCS2]
          Length = 254

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 71/227 (31%), Gaps = 9/227 (3%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILI 69
           + +++EL                                    L      +   +     
Sbjct: 14  ARTVEELWDVHSRQMETYGFDRLMYGFTRYRTSTGLGDPQDWVLLSTQSPEYMKVFFDEG 73

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIES---SGQLSVRLEGGLLPFAGIAFPVRL-- 124
             Y    L    +      W+ + +   +++   S +  +     +   AG     R   
Sbjct: 74  LYYHAPMLRWALANNGACSWRWMMDMNRVDNLTASERRVMEFNKSMDVTAGYTVSFRSIS 133

Query: 125 -GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSC 181
                   +   +     A E     HG    V+ + + L          RNLT+R+   
Sbjct: 134 ERTKGAIALTAKAGMTQDAVEQTWTKHGEEIIVLNNVMHLKLLTLPYSGERNLTKRQREV 193

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LQ  GDG T+++IA  LGL+  TV  +L  A   LD     QA+ KA
Sbjct: 194 LQWVGDGKTTQDIALLLGLTPATVEKHLRLAREALDVETTAQAVLKA 240


>gi|159044099|ref|YP_001532893.1| putative regulatory protein [Dinoroseobacter shibae DFL 12]
 gi|157911859|gb|ABV93292.1| putative regulatory protein [Dinoroseobacter shibae DFL 12]
          Length = 260

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 53/211 (25%), Gaps = 9/211 (4%)

Query: 27  RIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
                     +T  S       +     L +      +             +        
Sbjct: 36  EYGFDRLFYGHTRFSTPSTYADRHDALILSSLPQGYVERYLREGHYRNIPMIRWAEKNDG 95

Query: 86  PIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFPVRLGF-HKNGYVIFTSEF--L 139
              W  +      +      + ++          G +   R         +         
Sbjct: 96  ACSWSEVYARLHPDEMTPGTRKALGTRQAFGIENGYSISFRNLCQGGFAAISLVGREGLS 155

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEK 197
               + I  + GA  ++      L      + R   LT R+   L+    G T  EI   
Sbjct: 156 QADLDKIWASRGAEIELANRVFHLVVSSLPSRRPNRLTPRQREVLEWVAHGKTVPEICLL 215

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +G    TV  +L  A   ++A    QA+ +A
Sbjct: 216 IGRKQATVEKHLRLAREAMNAQTTAQAVLRA 246


>gi|328881870|emb|CCA55109.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 229

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +R+       +   +   ++A      A G   + + +      +R +A   LT RE   
Sbjct: 118 IRIAHAGEALLSPAATKGLIAT---FLAQGPGAEAVGEAGRARSERLAA---LTAREREV 171

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G +++EIAE+L +S  TV  ++  A  KL A +R Q +  A   G +
Sbjct: 172 LVLVAGGLSNDEIAERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 224


>gi|298246526|ref|ZP_06970332.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554007|gb|EFH87872.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 228

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD---FLELFKKRSSAARN-- 173
             P+          +  S          +  H     ++        + ++ S+ A+   
Sbjct: 108 CLPLHASRTTLHQALTASVHKET-----LLQHALVRSLLERIEGATPVEERSSAQAQRVD 162

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L     G  ++EIA  L +S  TV  +L +   KL   +R  A+A A++ G 
Sbjct: 163 LTERELEVLTCVARGQRNKEIATYLSISEPTVKTHLANIYFKLQVDSRASAVAVAMKRGL 222

Query: 234 I 234
           +
Sbjct: 223 L 223


>gi|283782494|ref|YP_003373249.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440947|gb|ADB19389.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 210

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAAR---NL 174
            R         +            I  AH         ++        +R         L
Sbjct: 91  ARAVALGAAGFLMKGSTKADVLSAITRAHTGLPPENESLMGRVRNTMARRRPTYDEEIPL 150

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L+    G ++ EI   L +S+ TV  ++ +   KL+A +R +A   A++ G +
Sbjct: 151 TNREVQVLRHVALGLSNREIGRSLDISIETVKEHVQNILRKLEAGDRTEAAVWAVKKGLV 210


>gi|227834238|ref|YP_002835945.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183272|ref|ZP_06042693.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455254|gb|ACP34007.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 212

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 46/109 (42%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +  + L   V   A G          +L  +  +   +LT RE   L+L 
Sbjct: 104 AGAVGYLLKDAPPVELLAAVRSAAEGDSALSPVVADKLMTRVRTPRTSLTPRELEVLKLV 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EI  +L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 164 AAGSSNREIGVELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212


>gi|284031067|ref|YP_003380998.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283810360|gb|ADB32199.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 9/149 (6%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHK--NGYVIFTSEFLMLANEV 145
             +     +                 AG +  +  R                  +L  E 
Sbjct: 74  DGLDPAPRVLVVTTFENDDYVYDALRAGASGFLLKRTPPDDIIAAIRTVAGSESLLFPEA 133

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           I     A  +      +  +    A  +LTERE   L+L   G ++ EIA +L L V T+
Sbjct: 134 IRGLALAHAE-----QQPRQFTGLARYDLTEREQEVLRLMAKGLSNAEIATELVLGVQTI 188

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++ +   KL A +R QA+  A   G++
Sbjct: 189 KTHVANLLGKLGARDRTQAVILAYESGFV 217


>gi|170781406|ref|YP_001709738.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155974|emb|CAQ01108.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 224

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +A   +  A G    ++        + +     L+ RET  L L   G T+  IA +L
Sbjct: 120 RAVARGEVALAPGIAAALVRQVARPAAEPAGPTPTLSPRETQVLALVAGGRTNARIALEL 179

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  TV  +L     KL   +R +A+  A+  G +
Sbjct: 180 HVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215


>gi|72162981|ref|YP_290638.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916713|gb|AAZ56615.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 233

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 17/160 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +          ++  R+         +A  V         VI           ++   + 
Sbjct: 74  LDVHLPGGGGIEVLRRILPKHPEIRFLALSVSDAAEDVIGVIRAGARGYVTKTISGTELA 133

Query: 148 EAH------------GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEI 194
           +A                  V+  F              LT+RE   L+L   GY  +E+
Sbjct: 134 DAIVRVADGDAVFSPRLAGFVLDAFAATDAPPVDPELDRLTQREREVLRLIARGYAYKEV 193

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L +SV TV  ++ S   KL   NR +    A     +
Sbjct: 194 ARELFISVKTVETHVSSVLRKLQLSNRHELSRWATARKLV 233


>gi|327438509|dbj|BAK14874.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 204

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE+  L+L  +G T++EIA +L LS  TV  Y+     KL   NRI+AIA+    G
Sbjct: 139 PLTERESQVLELVAEGKTTKEIAAELYLSAGTVRNYISVILDKLGVGNRIEAIARFKEKG 198

Query: 233 Y 233
           +
Sbjct: 199 W 199


>gi|312960211|ref|ZP_07774722.1| putative transcriptional regulator [Pseudomonas fluorescens WH6]
 gi|311285433|gb|EFQ64003.1| putative transcriptional regulator [Pseudomonas fluorescens WH6]
          Length = 219

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 55/208 (26%), Gaps = 8/208 (3%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79
           L      + A   A Y ++      R  +L+        D  D          D     +
Sbjct: 14  LQAFTQLVPASQAAFYCVD-RHLQARDFRLLGMSGEMHRDYLDNYRQF-----DPLQPRN 67

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
             S  L ++   +          +              +             +       
Sbjct: 68  CLSTGLAVVPLGLAMARQPLRDSRRYRDFLARYGVVDVVEIVAHRADQPQAAISLLRTAE 127

Query: 140 MLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
                +   A     QV+        +        LT +E     L   G +++++A+ L
Sbjct: 128 QGVFTLDQLAQLNALQVMLQMAVANMQPADDGLAGLTPKERQIAWLLRQGASNKQLAQAL 187

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            + + T+  +L     K    +R + +A
Sbjct: 188 DVGLPTIKTHLIHLFRKTGVSSRTELVA 215


>gi|325144605|gb|EGC66904.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240013]
          Length = 218

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|260437679|ref|ZP_05791495.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM
           2876]
 gi|292809905|gb|EFF69110.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM
           2876]
          Length = 218

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                   +NLT+RE   L L   GY +++I+ +L ++  TV  ++ S   K++  +R Q
Sbjct: 141 EDDPEERIKNLTKREIEVLLLISKGYVNKDISNELKITERTVKNHVSSIFRKINVNDRTQ 200

Query: 224 AIAKAIRF 231
           A   A++ 
Sbjct: 201 AAVFAVKN 208


>gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 219

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
             E      Q   + +    K++     LT  E      A  G+T+++I+E L +S  TV
Sbjct: 126 RAEMQRLAAQANVEQM----KQAPEPLPLTPAEMRVFWEAVQGWTNKQISEHLYVSPRTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             +L S   KL+  NR Q +  A   GY
Sbjct: 182 QTHLSSILNKLNLENRSQLVRFAYENGY 209


>gi|324997378|ref|ZP_08118490.1| putative two-component system response regulator [Pseudonocardia
           sp. P1]
          Length = 239

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +  A  LTERE   L L   G ++ EIA +L L   TV  ++ +   KLD  +R+Q 
Sbjct: 163 EPGAGPAGALTERERQVLGLVAAGLSNAEIAARLVLGGTTVKTHVSNLLTKLDLRDRVQL 222

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 223 VVFAYEHGLV 232


>gi|309378607|emb|CBX22785.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 218

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AIR 
Sbjct: 152 SLTPREMEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210


>gi|332560443|ref|ZP_08414761.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N]
 gi|332274241|gb|EGJ19557.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N]
          Length = 207

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 18/181 (9%)

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
           +         +      D  +    S      W ++             +          
Sbjct: 42  FPSSWIRHYTVQAFGLRDPLIRWAASANGAARWSAVHLPDEAG-----VLAAYRRHGLRF 96

Query: 117 G--IAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
           G  I  P R    +   + +F      + N  I        ++           +     
Sbjct: 97  GCVIGLPARTARSRKRSFGLFARNDREMTNHEIATLRATLAELH----------APNRDA 146

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT  +   L++  +G   +EIA +LG++   V A   +A  +L A   +QA   A R G 
Sbjct: 147 LTPSQAEVLRMLSEGVRYKEIAHRLGITEGAVKARFKAACDRLGARTAVQAANIAQRRGL 206

Query: 234 I 234
           +
Sbjct: 207 L 207


>gi|291443382|ref|ZP_06582772.1| two-component system [Streptomyces roseosporus NRRL 15998]
 gi|291346329|gb|EFE73233.1| two-component system [Streptomyces roseosporus NRRL 15998]
          Length = 207

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 11/153 (7%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148
                     +   R+    LP   +              +           L    + +
Sbjct: 55  DLRMPGGGGVESIRRIRAAGLPCRVVVLTTYESDSDILRAVEAGASGYLLKDLGRGELAD 114

Query: 149 AHGACYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           A  A  +        +   L    +       L+ERET  L+L  +G T+ EI  KL + 
Sbjct: 115 AIRAAARGETVLAPTVATRLVDRLRGVPELPRLSERETQVLRLVAEGCTNAEIGRKLFIG 174

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  +L     KL   +R  A+  A+R G +
Sbjct: 175 ESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGLL 207


>gi|229822019|ref|YP_002883545.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567932|gb|ACQ81783.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 211

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQL 184
               GY++  +    L   V   A G           L  + R  A   L+ RE   L+L
Sbjct: 96  AGATGYLLKDAPRDELFRAVEAAAQGQAVLSPAVATRLMGQMRQPAPEPLSRRELEVLEL 155

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T+ + A+ L +S  TV  +L  A  KL   +R  A+A A   GY+
Sbjct: 156 VARGSTNRDAAKHLFISEATVKTHLLHAYAKLGVNDRAAAVATAFSRGYL 205


>gi|16330518|ref|NP_441246.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1653009|dbj|BAA17926.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 226

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G +++EIA++L ++  TV  ++ +   KL+  +R QA   AI   
Sbjct: 163 PLTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERR 222

Query: 233 YI 234
            +
Sbjct: 223 LV 224


>gi|89073186|ref|ZP_01159725.1| putative nitrate/nitrite response regulator protein [Photobacterium
           sp. SKA34]
 gi|89051139|gb|EAR56596.1| putative nitrate/nitrite response regulator protein [Photobacterium
           sp. SKA34]
          Length = 208

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 11/134 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157
            + +    +    +   V         V+              + +IE         +  
Sbjct: 68  LIAMRDEGILACIVILTVSDSRSDIKTVLNAGADGYLLKDTEPDELIEQLKSALCGGKAY 127

Query: 158 TDFL--ELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +D +   L    +       LTERET  LQ    G  + +IAE+L +S  TV  ++ S  
Sbjct: 128 SDIVKESLESPNTPTNILSQLTERETQILQEVAKGQRNRQIAEQLFISEATVKVHMKSLL 187

Query: 214 VKLDAVNRIQAIAK 227
            KL   +R  A   
Sbjct: 188 KKLQVKSRTAATIL 201


>gi|325283103|ref|YP_004255644.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314912|gb|ADY26027.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 233

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               Q+     +  + R        LT RE+  L L   G +++EIA +LG+S  TV  +
Sbjct: 147 ALATQLRAIIADPTQDRLPRVEVPRLTPRESEVLPLLAQGLSNKEIARELGVSPDTVKDH 206

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     KLDA +R +A+++A   G +
Sbjct: 207 LARMYGKLDACDRTEAVSRARTIGLL 232


>gi|293405659|ref|ZP_06649651.1| transcriptional regulator NarP [Escherichia coli FVEC1412]
 gi|298381341|ref|ZP_06990940.1| two-component system [Escherichia coli FVEC1302]
 gi|300819110|ref|ZP_07099312.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 107-1]
 gi|300822646|ref|ZP_07102784.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 119-7]
 gi|300897746|ref|ZP_07116140.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 198-1]
 gi|300902154|ref|ZP_07120155.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 84-1]
 gi|300926301|ref|ZP_07142103.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 182-1]
 gi|300930429|ref|ZP_07145837.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 187-1]
 gi|300935141|ref|ZP_07150171.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 21-1]
 gi|300950044|ref|ZP_07163991.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 116-1]
 gi|300956848|ref|ZP_07169109.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 175-1]
 gi|301022495|ref|ZP_07186371.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 69-1]
 gi|301307196|ref|ZP_07213220.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 124-1]
 gi|301647050|ref|ZP_07246881.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 146-1]
 gi|309793076|ref|ZP_07687504.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 145-7]
 gi|331642822|ref|ZP_08343957.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H736]
 gi|331673712|ref|ZP_08374475.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA280]
 gi|331678147|ref|ZP_08378822.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H591]
 gi|332278650|ref|ZP_08391063.1| transcriptional regulator NarP [Shigella sp. D9]
 gi|291427867|gb|EFF00894.1| transcriptional regulator NarP [Escherichia coli FVEC1412]
 gi|298278783|gb|EFI20297.1| two-component system [Escherichia coli FVEC1302]
 gi|300316358|gb|EFJ66142.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 175-1]
 gi|300358520|gb|EFJ74390.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 198-1]
 gi|300397493|gb|EFJ81031.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 69-1]
 gi|300405747|gb|EFJ89285.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 84-1]
 gi|300417670|gb|EFK00981.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 182-1]
 gi|300450534|gb|EFK14154.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 116-1]
 gi|300459636|gb|EFK23129.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 21-1]
 gi|300461682|gb|EFK25175.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 187-1]
 gi|300524846|gb|EFK45915.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 119-7]
 gi|300528263|gb|EFK49325.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 107-1]
 gi|300837606|gb|EFK65366.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 124-1]
 gi|301074782|gb|EFK89588.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 146-1]
 gi|308123362|gb|EFO60624.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 145-7]
 gi|315252918|gb|EFU32886.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 85-1]
 gi|324020961|gb|EGB90180.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 117-3]
 gi|331039620|gb|EGI11840.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H736]
 gi|331068985|gb|EGI40377.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA280]
 gi|331074607|gb|EGI45927.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H591]
 gi|332101002|gb|EGJ04348.1| transcriptional regulator NarP [Shigella sp. D9]
          Length = 225

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 81  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 201 NLLRKLNVRSRVAATIL 217


>gi|254491566|ref|ZP_05104745.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463044|gb|EEF79314.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 214

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    L   +        L++RE    +L  +G T  +IA+ L LS  TV  +  S
Sbjct: 133 IAQQLAMQKLTGSEN---PIDVLSQREFEVFRLLAEGKTVNDIADILSLSPKTVGTHHTS 189

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  N  +    AIR G +
Sbjct: 190 IKQKLNVSNSAELARLAIRSGLL 212


>gi|282857278|ref|ZP_06266517.1| DNA-binding response regulator, LuxR family [Pyramidobacter
           piscolens W5455]
 gi|282584883|gb|EFB90212.1| DNA-binding response regulator, LuxR family [Pyramidobacter
           piscolens W5455]
          Length = 216

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLE 162
           +         I   ++ G         +S+ L LA + +              +I D+L 
Sbjct: 81  VLSMHGDKNLIVESLKAGARGYVLKECSSQELCLAIQTVANGQYYLTPAILSTLIGDYLR 140

Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           L +     +   L+ERE   L+L   G  +++IAE+L +S +TV+ +      KL   + 
Sbjct: 141 LTENEEQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSISKNTVDTHRRHILDKLGCNSM 200

Query: 222 IQAIAKAIRFGYI 234
            +    AIR GY+
Sbjct: 201 AELTRYAIREGYL 213


>gi|260770204|ref|ZP_05879137.1| DNA-binding response regulator LuxR family [Vibrio furnissii CIP
           102972]
 gi|260615542|gb|EEX40728.1| DNA-binding response regulator LuxR family [Vibrio furnissii CIP
           102972]
          Length = 209

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERET 179
           V+ G         +S+ L+LA N+V       C Q     L    +K +     L++RE+
Sbjct: 94  VKAGAKGYVLKDVSSDELVLAINQVAQGRSYLCPQASDKLLAQFNEKPAERDETLSKRES 153

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+    G  +++IA+ L +SV TV  +      KL A +    +  A+  G +
Sbjct: 154 DVLKAIVSGCGNKDIADTLHISVRTVETHRLRIKKKLGASSTAALVKLALEKGLV 208


>gi|260777127|ref|ZP_05886021.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606793|gb|EEX33067.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 206

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 38/56 (67%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           NLT+RE   ++L G G ++ +IA++L +S +TV  +L +   K++A NR+QA+  A
Sbjct: 141 NLTKREKEIMRLLGHGASNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 196


>gi|258653548|ref|YP_003202704.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556773|gb|ACV79715.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 223

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 34/79 (43%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                    +        LTERE   + L   G +++EIA +L LS  T   ++  A  K
Sbjct: 142 AAPGAATPDEAAGPDLSVLTEREREIVGLVAQGLSNDEIAARLYLSPLTAKTHVNRAMTK 201

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L A +R Q +  A R G +
Sbjct: 202 LGARDRAQLVVLAYRAGLV 220


>gi|223937482|ref|ZP_03629386.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893833|gb|EEF60290.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+  F E+  +       L++RE   LQ    GYT++EIAE+L +SV+TV  +L  
Sbjct: 130 IARRVVQSFREV-PREPVKNEKLSQREEEILQQLSKGYTTKEIAERLSVSVNTVRTHLQH 188

Query: 212 ATVKLDAVNRIQAIAK 227
              KL   +R +A+ K
Sbjct: 189 IYEKLHVRSRTEAVVK 204


>gi|126732495|ref|ZP_01748294.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Sagittula stellata E-37]
 gi|126707134|gb|EBA06201.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Sagittula stellata E-37]
          Length = 253

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 10/215 (4%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82
           + +                            L N+                   +     
Sbjct: 28  LMDAYGFDRLIYGFTRFLTPNSMGDPNDFVILSNHLPAYRKGFVEGGLYRDAPMVRWALE 87

Query: 83  GLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTS 136
                 W+ + E+     +    Q  V         AG       V         +   +
Sbjct: 88  NEGHCSWRVLAEQITTGALSEKAQKVVAFNVAHKVQAGYTISFKSVSSRAKGAISLTARA 147

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEE 193
           E      + +   HG    ++ + + L           + LT R+   L+  GDG T ++
Sbjct: 148 EMTQDDADAVWAEHGPDIVLLNNLVHLKILTLPVPLHNQTLTPRQREALEWVGDGKTMQD 207

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           IA+ +GL+  T+  +L  A   L+     QA+AKA
Sbjct: 208 IAQIMGLTQATIEKHLRLARETLNVETTAQAVAKA 242


>gi|153004251|ref|YP_001378576.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027824|gb|ABS25592.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 212

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 19/162 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVI 146
           +       +  + +  +   +     I   V       G  +             A  ++
Sbjct: 49  LDVTMPELNGLEATREIRASVPDTEIILLTVHDSDQLLGQALDAGARGYVLKEDAARHLV 108

Query: 147 IEAHGACYQVITDFLELFKKRSSAAR--------------NLTERETSCLQLAGDGYTSE 192
                             ++  +AA               +LT+RE   L+L   G ++ 
Sbjct: 109 DAIDALSKHAPYVPSRAAERPGNAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNR 168

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+A +L +S  TV  +  +   KL A + +  +  AIR G +
Sbjct: 169 EVAGQLSISAKTVETHRANVMRKLGASSIVDLVHYAIRNGIV 210


>gi|115358915|ref|YP_776053.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284203|gb|ABI89719.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 243

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 60/230 (26%), Gaps = 21/230 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72
             +    LH       A  FA  +           +    +L                  
Sbjct: 12  AADWQRALHACVAAFDA--FASPSAIVFYRLDLSGEPADFQLFGMPESMHRTYLA-RYRM 68

Query: 73  GDDFL-FHFNSGLLPII--WQSIQEETVIESS--GQLSVR----------LEGGLLPFAG 117
            D        +G+  ++     + +E    S+   +   R          L        G
Sbjct: 69  LDPLHPSRCAAGVRAVVTLASQLPDERRAASAYWTRFLRRHDVADVVEIWLRDDAGRTVG 128

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLT 175
               +R              F     + +          +   L   +   R      LT
Sbjct: 129 AFSLLRFEKGDAEGNSTAGRFAPGEVDALARLQPVAEAALAPLLRARRGIHRIDCEERLT 188

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            RE    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 189 YREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 238


>gi|313109516|ref|ZP_07795470.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310881972|gb|EFQ40566.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 222

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 14/219 (6%)

Query: 16  ELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
           +L PR +      + A     Y I+        +    +L                   D
Sbjct: 8   DLGPRCMQAFTQVVPASLCVFYRID-----EDCRAHDFQLLRMPAGMHRDYLRH-YRDYD 61

Query: 75  DFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                H  +   P++               L             +             + 
Sbjct: 62  PLQPRHCLASASPVVPLRQGIARQPAEDSALYQGFLRRHGICDVVEVLAHAQQRPVAALS 121

Query: 134 FTSE-----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +     F       +   HG   ++           +   + LT RE     L  DG
Sbjct: 122 LLRDARLGAFSDQELRQLRALHGL-MELAAQACATPTASAERLQGLTPREREIALLLRDG 180

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +++ +A+ LGL + TV  +L +   K  A +R + + +
Sbjct: 181 VSNKCLAQCLGLGLPTVKTHLLNLFRKTGARSRTELVKR 219


>gi|253573801|ref|ZP_04851144.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847329|gb|EES75334.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 215

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KRSSAARNLTER 177
              GYV+  S    L + + +   G           ++ +F+   +    ++  + L+ R
Sbjct: 97  GARGYVLKNSPDEQLVSAIRMVHQGGVYIHPKLASSLVREFVSQDQQADENNPYQLLSTR 156

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L L   GY ++EIAE L +SV TV A+      KL+  +R + +  AI+   +
Sbjct: 157 EVEILPLVAKGYGNKEIAEMLHISVKTVEAHKAKIMEKLNLKSRPELVEYAIKKKLL 213


>gi|239981400|ref|ZP_04703924.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291453255|ref|ZP_06592645.1| two component response regulator MppU [Streptomyces albus J1074]
 gi|291356204|gb|EFE83106.1| two component response regulator MppU [Streptomyces albus J1074]
          Length = 223

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                      +     LTERE     L  +G T+ +IA +L +S  TV  ++ +   K 
Sbjct: 140 HVTGNRTPGDPAPREEALTEREGEIAALVAEGGTNADIAAELFISPGTVKTHVAAIQRKF 199

Query: 217 DAVNRIQAIAKAIRFGY 233
              NR+    +A   GY
Sbjct: 200 GVRNRVGIAVRAFERGY 216


>gi|218708362|ref|YP_002415983.1| transcriptional regulator [Vibrio splendidus LGP32]
 gi|218321381|emb|CAV17331.1| transcriptional regulator [Vibrio splendidus LGP32]
          Length = 215

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +    +LT RE   ++    G ++ +IA+ L +S  TV ++L     KL   NR+QAIA 
Sbjct: 149 TPTNVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 208

Query: 228 A 228
           A
Sbjct: 209 A 209


>gi|196231497|ref|ZP_03130355.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224350|gb|EDY18862.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 216

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARNLTERE 178
               GY++ T+    +A  +                +V+  F      R      LT RE
Sbjct: 101 AGAAGYLLKTAPVEEIARAIRDALAGGAPMNGRIARRVLDMFARFAPTRGDGDYGLTTRE 160

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T  L+    G T +EIA +L LS HTV+ +L +   KL+   R  A+AKA++   +
Sbjct: 161 TQILEAMVKGRTKKEIAAQLDLSFHTVDTHLRNIYQKLEVNTRTGAVAKALKEKLV 216


>gi|148977874|ref|ZP_01814429.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145962943|gb|EDK28214.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 203

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +    +LT RE   ++    G ++ +IA+ L +S  TV ++L     KL   NR+QAIA 
Sbjct: 137 TPTNVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 196

Query: 228 A 228
           A
Sbjct: 197 A 197


>gi|86147858|ref|ZP_01066164.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|85834385|gb|EAQ52537.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
          Length = 215

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +    +LT RE   ++    G ++ +IA+ L +S  TV ++L     KL   NR+QAIA 
Sbjct: 149 TPTNVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 208

Query: 228 A 228
           A
Sbjct: 209 A 209


>gi|327439935|dbj|BAK16300.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 232

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             + +  P+       GY + T        ++++EA+    QV            +    
Sbjct: 111 QNSLLVVPITFNHVVVGYFLGTHFHKNFDPQLLMEANLFSSQVGEMLFNHPCYVENNEIK 170

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   ++    GY+S++IA  L +S  T+  Y+ S   K +  NR  A+A   +   
Sbjct: 171 LSKREFEVMKCVAFGYSSKQIAHLLEISETTIKQYIKSVMSKTNTSNRTHAVAFLFQKRI 230

Query: 234 I 234
           +
Sbjct: 231 L 231


>gi|291287188|ref|YP_003504004.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884348|gb|ADD68048.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 245

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 44/86 (51%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A      ++T+++ +    +     L+ RE S L     G TS E+A+ L ++ +TVN +
Sbjct: 159 ACYLHAHLLTNYVRILSVSNENIIKLSGREKSVLTWLKYGKTSWEVAKILNITENTVNFH 218

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL+A NR  A+A AI    I
Sbjct: 219 IKNIKNKLNATNRQHAVAIAIAKSII 244


>gi|239939951|ref|ZP_04691888.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986435|ref|ZP_04707099.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 206

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 11/153 (7%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148
                     +   R+    LP   +              +           L    + +
Sbjct: 54  DLRMPGGGGVESIRRIRAAGLPCRVVVLTTYESDSDILRAVEAGASGYLLKDLGRGELAD 113

Query: 149 AHGACYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           A  A  +        +   L    +       L+ERET  L+L  +G T+ EI  KL + 
Sbjct: 114 AIRAAARGETVLAPTVATRLVDRLRGVPELPRLSERETQVLRLVAEGCTNAEIGRKLFIG 173

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  +L     KL   +R  A+  A+R G +
Sbjct: 174 ESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGLL 206


>gi|239931733|ref|ZP_04688686.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440102|ref|ZP_06579492.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342997|gb|EFE69953.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 41/88 (46%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           + A     +V     +    R+    +LT RE   L     G++++EIAE+L +S  TV 
Sbjct: 136 LIARFLAQEVAAGEADRDPARAERLESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVK 195

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  A  KL A +R Q +  A   G +
Sbjct: 196 THVNRAMAKLGARDRAQLVVTAYESGLV 223


>gi|293410555|ref|ZP_06654131.1| transcriptional regulator NarP [Escherichia coli B354]
 gi|293446543|ref|ZP_06662965.1| two-component system [Escherichia coli B088]
 gi|291323373|gb|EFE62801.1| two-component system [Escherichia coli B088]
 gi|291471023|gb|EFF13507.1| transcriptional regulator NarP [Escherichia coli B354]
          Length = 236

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 92  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 151

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 152 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 211

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 212 NLLRKLNVRSRVAATIL 228


>gi|262273889|ref|ZP_06051702.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP
           101886]
 gi|262222304|gb|EEY73616.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP
           101886]
          Length = 224

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L+    G ++ EIA+ L +S HTV ++L +   K++  NR+QA+  A
Sbjct: 157 LTNREQQILRKLVTGASNSEIADSLFVSEHTVKSHLYNIFKKINVKNRVQAVFWA 211


>gi|189424620|ref|YP_001951797.1| LuxR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189420879|gb|ACD95277.1| two component transcriptional regulator, LuxR family [Geobacter
           lovleyi SZ]
          Length = 199

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 2/144 (1%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +               L         +                +     +  E   E   
Sbjct: 55  LDISMPGLDGLSAVAALRREGDLTPVVILTTHDDPLMLERAKCSGANGYVNKEFAFEQLL 114

Query: 152 ACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              + + D   L ++ + A  +  LT+RE   ++L   G +S  I E LG+S  TV+ + 
Sbjct: 115 LSLRKVADGTVLLEESAPATSSTALTDREREVIRLVACGMSSRLIGETLGISNKTVDNHR 174

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
            +   KL      + +  A++ G 
Sbjct: 175 TNIMGKLHIHTTAELVRYAVKLGL 198


>gi|17549201|ref|NP_522541.1| nitrate/nitrite response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431453|emb|CAD18131.1| probable nitrate/nitrite response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 222

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   ++    G +++EIA  L ++  TV  ++ +   KL+  +R+Q    A+ 
Sbjct: 157 ADRLTPREREIVRGLARGESNKEIARALDVAESTVKIHVQNILKKLNLTSRVQVAVYAVE 216

Query: 231 FGY 233
            G 
Sbjct: 217 HGL 219


>gi|333028557|ref|ZP_08456621.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332748409|gb|EGJ78850.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 215

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 4/115 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179
           L    +G+++  +    + + V + A G           L      +  +    LT RE 
Sbjct: 92  LRAGADGFLLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADQHGGRAPAPFPGLTGREG 151

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G ++ EIA +L +   TV  ++ +   KL A +R QA+  A   G++
Sbjct: 152 EVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 206


>gi|311031073|ref|ZP_07709163.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 213

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE S LQL G+G  ++EIAE L LS+ TV  ++     KL   +R Q    AIR G
Sbjct: 152 ELTSRERSILQLVGEGKNNQEIAEALYLSIGTVKNHVTVILQKLGLRDRTQLAIFAIRNG 211

Query: 233 YI 234
            +
Sbjct: 212 VV 213


>gi|161520286|ref|YP_001583713.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353536|ref|YP_001949163.1| putative regulatory protein [Burkholderia multivorans ATCC 17616]
 gi|221200550|ref|ZP_03573592.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
 gi|221206230|ref|ZP_03579244.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|160344336|gb|ABX17421.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337558|dbj|BAG46627.1| putative regulatory protein [Burkholderia multivorans ATCC 17616]
 gi|221174242|gb|EEE06675.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221179891|gb|EEE12296.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
          Length = 298

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 18/244 (7%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  A +      L                
Sbjct: 57  TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFAHERVESLYLHEAFT--PSTYRGDYV 114

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL----------SVRLEGGLLPFA 116
                  D          +PI+W   Q     +                ++        +
Sbjct: 115 RHNHHDVDPRTLGARVCNMPIVWDLQQLRRDHQPRDDDASDAPAALDGFLQTMQDDGMCS 174

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSA 170
           GI + + +   +   ++ FT+                 + G           +   R  A
Sbjct: 175 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATVEQALSIGLSVHKFASPQLIATSRERA 234

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      +
Sbjct: 235 VNGLTPFEQELLIGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTSK 294

Query: 231 FGYI 234
              I
Sbjct: 295 LELI 298


>gi|94497651|ref|ZP_01304219.1| putative transcription regulator protein [Sphingomonas sp. SKA58]
 gi|94422868|gb|EAT07901.1| putative transcription regulator protein [Sphingomonas sp. SKA58]
          Length = 208

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 11/183 (6%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIA 119
               +         +        P    +    T + +     + L       +  A I 
Sbjct: 22  RWWEVPQLALSSPIVHACRVEAEPFWCNAHGFRTRLPNPLLDLIDLHDFRIRAMTAAAIV 81

Query: 120 FPVRLGFHKNGYVIFTSEFLM-----LANEVIIEAHGACYQVITDFLE---LFKKRSSAA 171
            P+ L F + G   F S          A     +A     +             +   A+
Sbjct: 82  VPIHLPFGQIGAASFLSPEPDTNDLSDAYSSAADALAVLARAFVQSYSKVTARARHDLAS 141

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT+RE  CL+ A  G T+EEI   LGL   TV  ++ SA+VKLDAVNR Q + KA + 
Sbjct: 142 ISLTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRSASVKLDAVNRDQTMFKAAQL 201

Query: 232 GYI 234
           G++
Sbjct: 202 GFL 204


>gi|56415066|ref|YP_152141.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363995|ref|YP_002143632.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129323|gb|AAV78829.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095472|emb|CAR61035.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 227

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 9/207 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I   I   +   Y +N+ L     +     LHN    +            D      
Sbjct: 18  LQSIAQLIPLSSAVFYRVNAYL-----KPEAYVLHNISNSTHQQYLEH-FQPLDPL--SP 69

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
           +     +I  +     +                    I   +R G      +      + 
Sbjct: 70  SRFGQQVITVATMTPGICARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIP 128

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E  + A      +     +  ++ ++    LT +E   + +  +G +++ IA +L +
Sbjct: 129 FSSEECLRAQAVQPLLGLAIHDSLQEDNNLTSILTAKEREIVGMVCEGASNKLIARQLNI 188

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ TV  +L +   K + +NR + +++
Sbjct: 189 SLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|313668365|ref|YP_004048649.1| two-component system response regulator [Neisseria lactamica
           ST-640]
 gi|313005827|emb|CBN87281.1| putative two-component system response regulator [Neisseria
           lactamica 020-06]
          Length = 218

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|281415470|ref|ZP_06247212.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 202

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  +    +A+ V   A G           L  + S  +  L+ERE   L+L
Sbjct: 92  NAGAAGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLEL 151

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T++  A++L +S  TV  +L     KL   NR +A+ +A R   I
Sbjct: 152 IARGATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 201


>gi|289811480|ref|ZP_06542109.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 115

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 125 GFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERET 179
                G++ F+   L  ++    EV +       + ++    L      +     ++RE 
Sbjct: 1   PNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREK 60

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+   +G TS EIA  L +S +TVN +  +   K +A N+ Q    A   G I
Sbjct: 61  EILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 115


>gi|318060416|ref|ZP_07979139.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078887|ref|ZP_07986219.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 219

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179
           L    +G+++  +    +A+ V + A G           L      +  +    LT RE 
Sbjct: 96  LRAGADGFLLKRARPAEIAHAVRVVAAGDSLLFPAAVRRLADHHGGRAPAPFPGLTGREG 155

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G ++ EIA +L +   TV  ++ +   KL A +R QA+  A   G++
Sbjct: 156 EVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210


>gi|320105355|ref|YP_004180945.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319923876|gb|ADV80951.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 217

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A +L+ RET  L+    G ++ +IA+ L +S  TV  ++ S   KLDA +R QA+  A++
Sbjct: 152 ANDLSPRETEVLRSVAQGRSNRQIADALLISEDTVKGHMKSIMAKLDAGDRTQAVIIAMK 211

Query: 231 FGYI 234
            G++
Sbjct: 212 RGFL 215


>gi|329939783|ref|ZP_08289084.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329301353|gb|EGG45248.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 208

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 161 LELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           L L     S A        LT RE+  + L   G ++ EIAEK+ ++  TV +++     
Sbjct: 114 LHLLPDIVSPAPATGLLATLTPRESEVIVLLAQGKSNVEIAEKMSITTATVRSHVHHLLR 173

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL    R QA+A A   G I
Sbjct: 174 KLGVGTRAQAVAFAYESGLI 193


>gi|330807579|ref|YP_004352041.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375687|gb|AEA67037.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 911

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 129 NGYVIFTSEFLMLANEVIIEA--HGACYQVITDF---LELFKKRSSAARNLTERETSCLQ 183
             +     E      E +++A        ++      +      ++    L+ RE + LQ
Sbjct: 800 QPFEWLFGEHREWLREQLLQAPPSTLREHLLERLPSTVAQPADPAAPVETLSSRERAVLQ 859

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G +++EI+E+L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 860 LIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKALGLL 910


>gi|163746352|ref|ZP_02153710.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Oceanibulbus indolifex HEL-45]
 gi|161380237|gb|EDQ04648.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Oceanibulbus indolifex HEL-45]
          Length = 251

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 12/206 (5%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            F  Y   ++L  P        L N   +           +    +    +      W +
Sbjct: 38  GFTRYRTPTSLGDPA---DFVILSNQSSEYLKGYLHSGLYFHAPMVRWALNNEGACSWGA 94

Query: 92  IQEET---VIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEV 145
           ++E      +  +    +     +   AG       +         +           + 
Sbjct: 95  LREIALGEGLTETESRVIEFNRSMDVTAGYTISFRSISARSKGAIALTARPGMSQADVDA 154

Query: 146 IIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           I   HG   Q++ +   L           R+LT R+   L+  GDG T+++IA  +GL+ 
Sbjct: 155 IWTEHGRDIQLMNEIAHLKILSLPYSSPNRSLTRRQLEVLEWVGDGKTTQDIALLMGLTA 214

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228
            TV  +L  A   L      QA+ KA
Sbjct: 215 ATVEKHLRLAREALSVETTAQAVLKA 240


>gi|94969470|ref|YP_591518.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551520|gb|ABF41444.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 215

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           I A  A  + I   +       +   +LTERE   L+L G+G +++ IA++L +   TV 
Sbjct: 121 IRAVHAGQKRIPAEIAAELADHAVDDHLTERELDVLRLIGEGNSNKLIADQLSIGEATVK 180

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +++ +   KL A +R  A+   +R G I
Sbjct: 181 SHVTNILSKLGASDRAHAVTIGLRRGII 208


>gi|54024206|ref|YP_118448.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54015714|dbj|BAD57084.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 222

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
            L  A +   +  G          +  L+ +   +     A        +    + +   
Sbjct: 100 FLDDALVLEAIHRGAKGYVLKDVDTTALVSSIRAVARDESAFDPRSASVMMRTIRTAPEE 159

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RET  L+L   G ++ EI  +L +S  TV  ++ +   KL A  R  A+ +A + 
Sbjct: 160 PTLTDRETKVLELLARGMSNREIGGRLYISETTVKFHVRNIMRKLSASTRAGAVYEASKL 219

Query: 232 GYI 234
           G I
Sbjct: 220 GLI 222


>gi|332885458|gb|EGK05707.1| hypothetical protein HMPREF9456_02509 [Dysgonomonas mossii DSM
           22836]
          Length = 245

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 41/67 (61%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           SS A +LT RE + LQL  +G  S+EI+E+L +SVHTVN +      KLD  N ++A+  
Sbjct: 178 SSKASDLTTREIAVLQLIKEGLLSKEISEQLFISVHTVNTHRQRILEKLDVNNSMEAVKY 237

Query: 228 AIRFGYI 234
           A   G I
Sbjct: 238 ASALGLI 244


>gi|327330300|gb|EGE72049.1| nitrate/nitrite response regulator protein NarL [Propionibacterium
           acnes HL097PA1]
          Length = 210

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + +   A G           L  +  S   +LT RE   L+ +
Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMARMRSPRTSLTARELDVLEAS 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +IAE L +S  TV  +L     KL   +R  A+AKA   G+I
Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|312876261|ref|ZP_07736247.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796907|gb|EFR13250.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 215

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LTERE   ++L   GY+++EIA  L +S  TV  Y+ S   KL   NR Q    
Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIY 209


>gi|312792317|ref|YP_004025240.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179457|gb|ADQ39627.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 215

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LTERE   ++L   GY+++EIA  L +S  TV  Y+ S   KL   NR Q    
Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIY 209


>gi|260433688|ref|ZP_05787659.1| autoinducer-binding transcriptional regulator, LuxR family
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417516|gb|EEX10775.1| autoinducer-binding transcriptional regulator, LuxR family
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 251

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 67/226 (29%), Gaps = 11/226 (4%)

Query: 13  SLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIE 70
           +L+EL +     +                              L N+  +  D       
Sbjct: 16  TLEELWASHTEQMMQ-FGFDRLLYGHTQYRTQTSLGDPEDFVILTNHCQEYMDGFLRDGL 74

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
            +    L    +      W  I++      +    +             G          
Sbjct: 75  YFHAPMLKWALNHEGAASWNMIRDMMSSGAMTDQERKVYDFNRSNGISVGYTISFTSVSV 134

Query: 128 KN-GYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCL 182
           ++ G +   S        + I   HG    ++ +   L           R LT+R+   L
Sbjct: 135 RSKGAISLASLTRSQEELDQIWAKHGDDILLMNNVAHLKILTLPYHPPNRALTKRQREAL 194

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +  GDG T+++IA  +GL+  TV  +L  A   L      QA+ KA
Sbjct: 195 EWVGDGKTTQDIALLMGLTTATVEKHLRLAREALSVETTAQAVLKA 240


>gi|254505671|ref|ZP_05117817.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
 gi|219551324|gb|EED28303.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
          Length = 222

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 38/56 (67%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           NLT+RE   ++L G G ++ +IA++L +S +TV  +L +   K++A NR+QA+  A
Sbjct: 157 NLTKREKEIMRLLGHGASNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|405947|gb|AAA16411.1| narP [Escherichia coli]
          Length = 225

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 81  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 201 NLLRKLNVRSRVAATIL 217


>gi|302341508|ref|YP_003806037.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301638121|gb|ADK83443.1| two component transcriptional regulator, LuxR family [Desulfarculus
           baarsii DSM 2075]
          Length = 225

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               ++ +F+++     + A      LT+RE   L+L  +G  + EIA+KL LS  TV  
Sbjct: 132 VAGHIVDEFVKMPDMTPAPAQDSQERLTDRERQLLRLVVEGLPNREIADKLCLSQKTVEN 191

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   KL   + I  +  AI  G +
Sbjct: 192 HRANIMRKLGRHDVIGLVKYAIATGLV 218


>gi|312194246|ref|YP_004014307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311225582|gb|ADP78437.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 245

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V     +     F                    +V         +       LT+RE   
Sbjct: 126 VAPNVTRRLLDAFAHHLPDPDASADGGPDRPAGRVANRRTAGTDR----LDRLTDRERDV 181

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G ++ EIA +L LS  TV  ++G    KL+  +R+QA+  A   G I
Sbjct: 182 LGEVAAGLSNAEIAARLVLSEATVKTHVGRILAKLELRDRVQAVVFAYETGLI 234


>gi|291302714|ref|YP_003513992.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571934|gb|ADD44899.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 218

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 37/80 (46%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +VI  F +     +     LT+RET  L L   G ++ EIA +L +S  T   ++     
Sbjct: 134 RVIESFADTTATDAPDIDGLTDRETEVLGLVARGLSNAEIAGRLSMSPATAKTHVNRTMT 193

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A +R Q +  A   G +
Sbjct: 194 KLGARDRAQLVIFAYETGLV 213


>gi|78062461|ref|YP_372369.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77970346|gb|ABB11725.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 215

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 36/78 (46%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                  L K   S    LT RE   L+   +G ++  IA  LG++  TV  +LG+   K
Sbjct: 133 AQRMIGALRKPPLSPFAALTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSK 192

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L   +R QA+A A R G 
Sbjct: 193 LHLSDRTQAVALAWREGL 210


>gi|41409373|ref|NP_962209.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398193|gb|AAS05823.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 221

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 19/233 (8%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
            +  T      + +       +   +    FA+      +   +R+  +       +D  
Sbjct: 2   TDDATPTTVMVVDDHPIWRDAVARDLAESGFAVVATADGVTAAQRRAGVVRPDVVVMDM- 60

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
            +P+          L    S  + ++  S + + V+++    +          A +A  V
Sbjct: 61  QLPDGDGAQATAAVLAVSPSSRVLVLSASDERDDVLQAVKAGAAGYLVKSASKAELAQAV 120

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETS 180
                       +                    V+ ++  + +          LT+RET 
Sbjct: 121 TDTAAGRAVFTPS----------------LAGLVLGEYRRIAQSKDDGPTRPRLTDRETE 164

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L+    G ++++IAEKL LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 165 VLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|331698378|ref|YP_004334617.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953067|gb|AEA26764.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 212

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----ML 141
           P+    +     +    +    L         +              I            
Sbjct: 52  PVDVVLMDLRMPVMGGVEAIRELRRSGSAPRVLVLTTFDTDRDVLPAIEAGATGYLLKDT 111

Query: 142 ANEVIIEAHGACYQ------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
             + ++ A  A Y+             + + R+     L+ RE   LQL   G T+ E A
Sbjct: 112 PRDELLRAVRAAYRGEAVLSPAVAGRLMGQVRTPTEEALSSRELEVLQLVAAGATNREAA 171

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L +S  T+  +L     KL+  +R  A++ A R G +
Sbjct: 172 RRLFISEATIKTHLLHIYAKLEVRDRASAVSAAYRRGLL 210


>gi|325142479|gb|EGC64883.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           961-5945]
 gi|325198384|gb|ADY93840.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           G2136]
          Length = 218

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|323499247|ref|ZP_08104224.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315635|gb|EGA68669.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 222

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 38/56 (67%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           NLT+RE   ++L G G ++ +IA++L +S +TV  +L +   K++A NR+QA+  A
Sbjct: 157 NLTKREKEIMRLLGHGASNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|239918332|ref|YP_002957890.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839539|gb|ACS31336.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 209

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  +    +A+ V   A G           L  + S  +  L+ERE   L+L
Sbjct: 99  NAGAAGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLEL 158

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T++  A++L +S  TV  +L     KL   NR +A+ +A R   I
Sbjct: 159 IARGATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208


>gi|121634943|ref|YP_975188.1| putative two-component system response regulator [Neisseria
           meningitidis FAM18]
 gi|254805030|ref|YP_003083251.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|304387489|ref|ZP_07369678.1| nitrate/nitrite response regulator protein NarL [Neisseria
           meningitidis ATCC 13091]
 gi|120866649|emb|CAM10400.1| putative two-component system response regulator [Neisseria
           meningitidis FAM18]
 gi|254668572|emb|CBA06069.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|254670104|emb|CBA05041.1| putative two-component system response regulator [Neisseria
           meningitidis alpha153]
 gi|304338376|gb|EFM04497.1| nitrate/nitrite response regulator protein NarL [Neisseria
           meningitidis ATCC 13091]
 gi|325132566|gb|EGC55259.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M6190]
 gi|325138339|gb|EGC60908.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           ES14902]
          Length = 218

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  +LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   AI
Sbjct: 149 ALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAI 208

Query: 230 RF 231
           R 
Sbjct: 209 RH 210


>gi|118464868|ref|YP_880140.1| LuxR family transcriptional regulator [Mycobacterium avium 104]
 gi|118166155|gb|ABK67052.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           avium 104]
          Length = 183

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    L    +                    G+V+  S  
Sbjct: 23  DVALLDYRMPGMDGAQVAAAVRADGLATRVLLISAHDESAIVYQALQQGAAGFVLKDSTR 82

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++       L+ RE   L     G +   I
Sbjct: 83  SEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPTGPVLSAREREVLHRIARGQSIPAI 142

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL   +R  A+A+A+R G +
Sbjct: 143 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 182


>gi|134294023|ref|YP_001117759.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137180|gb|ABO58294.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 302

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 68/244 (27%), Gaps = 18/244 (7%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T  ++ S  E +  +  + +      FA + +  + +      L                
Sbjct: 61  TLAQAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PATYRGDYV 118

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQL---------SVRLEGGLLPFA 116
                  D          +PI+W          E  G            ++        +
Sbjct: 119 RHSHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDGGPCVTSAALDGFLQTMQDDGMCS 178

Query: 117 GIAFPVRLGFHKNGYVI------FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
           GI + + +   +    +       T E++         + G           +   R  A
Sbjct: 179 GIMYSMAVPGTRLHAFMSFTAPRRTREWIAPTTIEQALSIGLSVHKFASPQLIATSRERA 238

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      +
Sbjct: 239 INGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTSK 298

Query: 231 FGYI 234
              I
Sbjct: 299 LELI 302


>gi|261251088|ref|ZP_05943662.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP
           102891]
 gi|260937961|gb|EEX93949.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP
           102891]
          Length = 209

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             C Q     LE + +        L++RE+  L+   +G  ++EIA+ L +SV TV  + 
Sbjct: 124 YLCPQASDRLLEQINEAPEEKDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTVETHR 183

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL A +    +  A++ G +
Sbjct: 184 LRIKKKLGATSTAALVKLALQKGLV 208


>gi|255067698|ref|ZP_05319553.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca
           ATCC 29256]
 gi|255048039|gb|EET43503.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca
           ATCC 29256]
          Length = 218

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +  S    +  + +         V +       +   A   LT RE   L     G+++
Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRELEILGYLAAGHSN 170

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + IA  L L+  TV  ++ +   KL+  +R+QA   A++ 
Sbjct: 171 KVIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210


>gi|755086|dbj|BAA08666.1| MoaR-transcriptional positive regulator [Enterobacter aerogenes]
          Length = 227

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 10/219 (4%)

Query: 10  KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           K+S    +  R L  I   I   +   Y +N+ L     +     LHN   ++       
Sbjct: 6   KASRNDAIIARCLQTISQLIPLSSAVFYRVNNRL-----KPENYILHNISDNTHQQYLE- 59

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L    S     +        + + +                    +R     
Sbjct: 60  SFQPLDPHLPAHFSHQSTTMAAMTP--RLCDRNRHYYHEFMLPNNVRDMTEIFIRRERRI 117

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +      +  ++E  + A      V     +  ++       LT +E   + +  +G
Sbjct: 118 VAGISLMR-DVPFSSEERLRAQAVLPLVELAIRDFLQEEDELPAILTAKEREIVGMVREG 176

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +++ IA +L +S+ TV  +L +   K + VNR + +++
Sbjct: 177 ASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215


>gi|328882240|emb|CCA55479.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 226

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                  +         +     LT RET  L+L   G +++EIA+ L L+  TV  ++G
Sbjct: 138 LIADFAASRPAPRKDTTALRLNGLTPRETEVLELIARGLSNQEIADHLVLAEQTVKTHIG 197

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KLD  +R QA+  A   G +
Sbjct: 198 RVLAKLDLRDRAQAVVFAYESGLV 221


>gi|308177612|ref|YP_003917018.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745075|emb|CBT76047.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 205

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 41/109 (37%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       + + +   A G           + +        LT+RE   L   
Sbjct: 97  AGAAGYLLKDVSAQTIVDSIRQAALGNVVLAPEMTQRVVEGMRRPKVELTKREKDVLVQL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  +++IA+ L +S  TV  +L     KL A  R  AI KA   G +
Sbjct: 157 ATGAANKQIAKALFVSEATVKTHLVHIFDKLQATTRTDAINKAQDLGLL 205


>gi|296448320|ref|ZP_06890211.1| transcriptional regulator, LuxR family [Methylosinus trichosporium
           OB3b]
 gi|296254166|gb|EFH01302.1| transcriptional regulator, LuxR family [Methylosinus trichosporium
           OB3b]
          Length = 254

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 17/224 (7%)

Query: 23  LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD-DFLFHFN 81
            +Q  +    F        +     + +    H +  +   + +       D   L  + 
Sbjct: 36  EMQRIVPHEWF--ICSVGRIGRNGIEPIHVVTHKFPDELFALISGSDPKVLDNPVLSRWW 93

Query: 82  SGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
               PI            +   + +++ +   L   G    V +G     Y  F      
Sbjct: 94  ETRAPIAINFEDCSGSWPQVMAERAIKFDARNLLGHG---QVDIGGAFVTYFSFHRIPQR 150

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAA----------RNLTERETSCLQLAGDGYT 190
           L  +  +        +   F        SAA            LT R+   L+    G T
Sbjct: 151 LDRKQTLLLARIVPNLYAAFARAHPSFESAATVKRLNDGRGAELTPRQIEILEWLRQGKT 210

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EI+  LG+SV  V  ++   T KL   NR QA+A+A     I
Sbjct: 211 NWEISVILGMSVDNVKYHVKQITRKLQVANRTQAVAEAASRSVI 254


>gi|317131807|ref|YP_004091121.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469786|gb|ADU26390.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 225

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H       +        ++     L+  E   ++  G G +++EIA KL LS  TV  YL
Sbjct: 135 HMFSKMAQSSLTSPTAGKT--LELLSRTEKQVVREVGRGLSNKEIARKLNLSEGTVRNYL 192

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+  +R Q    A + G +
Sbjct: 193 STILSKLELRDRTQLAIWATQSGIL 217


>gi|254449548|ref|ZP_05062985.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
 gi|198263954|gb|EDY88224.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
          Length = 204

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +  A  LTERE   L+   +G ++++IA  L +   TV  ++ +   K+ A NR QA 
Sbjct: 136 PANPLADKLTERELQVLKGLTEGKSNKQIARDLEIQEPTVKLHMKTLYRKVGAANRTQAA 195

Query: 226 AKAIRFGY 233
             A   G 
Sbjct: 196 MIAREAGL 203


>gi|327485685|gb|AEA80091.1| Nitrate/nitrite response regulator protein [Vibrio cholerae
           LMA3894-4]
          Length = 201

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L   + 
Sbjct: 73  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 132

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 133 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 192

Query: 227 KAIRF 231
             +  
Sbjct: 193 LYLER 197


>gi|327390805|gb|EGE89145.1| bacterial regulatory s, luxR family protein [Streptococcus
           pneumoniae GA04375]
          Length = 72

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   LQL   GY ++ IA+ L +S+ TV  ++ +   KL+  +R QA   A +
Sbjct: 4   HEELTARERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQ 63

Query: 231 FGYI 234
              +
Sbjct: 64  HHLV 67


>gi|313801796|gb|EFS43030.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|314962915|gb|EFT07015.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
          Length = 218

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175
           L    +G+++  ++   L   +   A G           +  +          S A  LT
Sbjct: 92  LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLT 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A A   G I
Sbjct: 152 AREIEVAKLGARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|298246666|ref|ZP_06970471.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297549325|gb|EFH83191.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1067

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 134  FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
             T+E    A+  +      C Q     +   ++ +    +L+ERE   L+   +G ++ E
Sbjct: 968  RTTENPAPASRYLDRLILLCKQEQQMGVPSGEQ-AELVESLSERECEVLRHISEGRSNRE 1026

Query: 194  IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            IA +L +++ TV +++ +   KL   +R QA+ +A R   +
Sbjct: 1027 IARQLVIALSTVKSHIRAIYAKLGVKSRTQALIQARRLNLL 1067


>gi|229522242|ref|ZP_04411658.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM
           11079-80]
 gi|229340227|gb|EEO05233.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM
           11079-80]
          Length = 207

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L         +   V         ++              + ++       Q        
Sbjct: 70  LRSDECDAYVVILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSES 129

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L   +  S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KL
Sbjct: 130 VERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKL 189

Query: 217 DAVNRIQAIAKAIRF 231
           D  +R  A    +  
Sbjct: 190 DVPSRTAATILYLER 204


>gi|291326938|ref|ZP_06126411.2| monoamine regulon transcriptional regulator [Providencia rettgeri
           DSM 1131]
 gi|291312593|gb|EFE53046.1| monoamine regulon transcriptional regulator [Providencia rettgeri
           DSM 1131]
          Length = 222

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 14/206 (6%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79
           L+ I + I       Y +N        Q     LH       +          D     H
Sbjct: 19  LNTIAHIIPVSALVYYLVN-----DHCQPDNYVLHGISAKMHEEYLT-YFHQLDPLHPDH 72

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
           F S  L ++   +  E   ++                     +R        +       
Sbjct: 73  FRSDDLRLV--RMDSEIRQQNQA-FFHDFMQPNNMADMAEIFIRRKNKIIAGISVLR-DS 128

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
             + + I+  +          L  F     +  + T +E   + L  +G +++ IA  LG
Sbjct: 129 PFSQQEIMRLNAILPVA---ELMTFDVLPDSLVSYTPKEQEIIHLVREGASNKRIALLLG 185

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAI 225
           +S+ TV  +L +   K +  NR + +
Sbjct: 186 VSLSTVKTHLRNIFTKANVTNRTELV 211


>gi|86146681|ref|ZP_01065002.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|218676406|ref|YP_002395225.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
 gi|85835528|gb|EAQ53665.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|218324674|emb|CAV26268.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 227

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                   T     + ++ +         ++++      K       LT+RE    +   
Sbjct: 112 QDAPVEHLTRCLKTVCDDDLWLPRKLMSHILSNARSQTFKSQVILSTLTKREAQIFKRVI 171

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            G T+ EI+ +L +S  TV  ++ +   K++  NR +AI KA
Sbjct: 172 RGDTNLEISSELFISESTVKTHVYNIYKKINVTNRKEAIRKA 213


>gi|330823094|ref|YP_004386397.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|329308466|gb|AEB82881.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 224

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 5/124 (4%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +   +                 +++ E++ +   A         E     
Sbjct: 96  AALRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQS--QGAPEPDPGP 153

Query: 168 SS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                 A  L+ RE   L+    G +++EIA +L ++  TV  ++     KL   +R+QA
Sbjct: 154 MPQEDPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQA 213

Query: 225 IAKA 228
              A
Sbjct: 214 AVYA 217


>gi|328950846|ref|YP_004368181.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451170|gb|AEB12071.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 192

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 154 YQVITDFLELFKKR-----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            ++    L+L + R           LT RE   L L   G T++E+A  L LS  TV  +
Sbjct: 107 AELARRVLDLAEGRAGRFVPPPVPELTAREREVLTLLARGMTAKEMARYLNLSPDTVRDH 166

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     KLDA  R++A+ +A + G I
Sbjct: 167 LKRLYGKLDARGRVEALVRARQLGLI 192


>gi|317049077|ref|YP_004116725.1| LuxR family two component transcriptional regulator [Pantoea sp.
           At-9b]
 gi|316950694|gb|ADU70169.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           At-9b]
          Length = 210

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----------ACYQV 156
           L    +    +   V    +    +I       L  +   E                 +V
Sbjct: 73  LRHEEISARILVLTVSDARNDIYAMIDAGADGYLLKDSEPELLLQQILSGAQGETVFSEV 132

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + ++L      ++  R LTERE   LQ    G +++EIA  L +S  TV  ++ +   KL
Sbjct: 133 VEEYLANRPHSANPFRELTERELDVLQEVARGLSNKEIATTLHISEETVKVHIRNLLRKL 192

Query: 217 DAVNRIQAIAKAIR 230
           D  +R+ A    + 
Sbjct: 193 DVRSRVAATVLWLE 206


>gi|312136161|ref|YP_004003499.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor owensensis OL]
 gi|311776212|gb|ADQ05699.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor owensensis OL]
          Length = 213

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +NL+ERE    +L   GY++++I++ L +S  TV  Y+ S   KL+  NR Q    
Sbjct: 153 KNLSERELEIARLIAQGYSNKDISKILFISEGTVRNYISSILEKLELKNRTQIAVY 208


>gi|226308488|ref|YP_002768448.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226187605|dbj|BAH35709.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 292

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
           +  +    ++    +                   L           +    +A    + A
Sbjct: 147 REFEIRDEVDRRVAMLDTAAVEHGSNRDAQISEGLTESVLALGEIAANLEDMALSAQVLA 206

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             A  + +           +    L+ RE   +     G  + EIAE+L LSV T+  Y+
Sbjct: 207 VEAKLRALASPNPSANTPVANTVVLSPREREVMGYVALGLRNAEIAERLSLSVETIKTYM 266

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KLD  +R +A+ +A R G I
Sbjct: 267 RNLMGKLDVRSRHEAVVEARRQGLI 291


>gi|29826626|ref|NP_821260.1| erythropoiesis-stimulating protein [Streptomyces avermitilis
           MA-4680]
 gi|29603722|dbj|BAC67795.1| putative erythropoiesis-stimulating protein [Streptomyces
           avermitilis MA-4680]
          Length = 331

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 80/227 (35%), Gaps = 15/227 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L ++  RL  +   +         +  A   P+    +      + D       
Sbjct: 116 VEQLVGLDQIRDRLTGLTREVSEE-----LLTFAPGGPQTADNMAASRPLNGDLLGRGVR 170

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +   Y D       +    +           +     ++     L+        V     
Sbjct: 171 MRTLYLDSV----RTDRATVEHARWLTSLGGQVRTVPALPTRLILMDRKTALISVSSDDT 226

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
             G V+ T +  + A   + E   A  Q + D + + +        LT ++ + ++L  +
Sbjct: 227 AAGAVVLTGQGTLTALHALFETTWAGAQPLGDTVPVDR------HGLTGQQATVVRLLAE 280

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+T E IA++LG+S  T          +L+A +R +A  +A++ G++
Sbjct: 281 GHTDETIAKRLGVSPRTARRIASELMERLEARSRFEAGVRAVQRGWL 327


>gi|325686801|gb|EGD28826.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 199

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KL+A NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|319950310|ref|ZP_08024229.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
 gi|319436002|gb|EFV91203.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
          Length = 250

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 41/107 (38%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +            +   VI                    R+S    LT RET  L+L   
Sbjct: 140 RAVGHGHALLAPEVTRRVIERLAAPPPADDAPDAGRPGPRASELAGLTARETEVLRLVAR 199

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ EIA++L +   TV  ++ S   KL   +R+QA+  A   G +
Sbjct: 200 GLSNAEIADELVVGEATVKTHVSSCLAKLHLRDRVQAVVLAYEVGLV 246


>gi|311896597|dbj|BAJ29005.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT RE   L+L   G ++ EIA +L +S HTV  ++ +   KL   +R+ A+  A   
Sbjct: 154 ESLTGREAETLKLVARGMSNAEIAAELVVSEHTVKTHVSNLLQKLGLRDRVHAVVFAYEA 213

Query: 232 G 232
           G
Sbjct: 214 G 214


>gi|293401509|ref|ZP_06645652.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305147|gb|EFE46393.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 83

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE    +L    Y++ EIA+++G+S  TV  ++ +  +KL    R QA+ + ++ G
Sbjct: 21  LTPREKEVFELLIANYSTREIAKRMGISDKTVRNHISNVMLKLGVKGRAQAVVELLKLG 79


>gi|26248576|ref|NP_754616.1| transcriptional regulator NarP [Escherichia coli CFT073]
 gi|91211483|ref|YP_541469.1| transcriptional regulator NarP [Escherichia coli UTI89]
 gi|117624388|ref|YP_853301.1| transcriptional regulator NarP [Escherichia coli APEC O1]
 gi|227887250|ref|ZP_04005055.1| transcriptional regulator NarP [Escherichia coli 83972]
 gi|237704666|ref|ZP_04535147.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA]
 gi|300981378|ref|ZP_07175493.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 200-1]
 gi|300982960|ref|ZP_07176392.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 45-1]
 gi|301048933|ref|ZP_07195926.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 185-1]
 gi|331647847|ref|ZP_08348939.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M605]
 gi|26108981|gb|AAN81184.1|AE016763_143 Nitrate/nitrite response regulator protein narP [Escherichia coli
           CFT073]
 gi|91073057|gb|ABE07938.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           UTI89]
 gi|115513512|gb|ABJ01587.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           APEC O1]
 gi|222033954|emb|CAP76695.1| Nitrate/nitrite response regulator protein narP [Escherichia coli
           LF82]
 gi|226901032|gb|EEH87291.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA]
 gi|227835600|gb|EEJ46066.1| transcriptional regulator NarP [Escherichia coli 83972]
 gi|300299309|gb|EFJ55694.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 185-1]
 gi|300307590|gb|EFJ62110.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 200-1]
 gi|300408653|gb|EFJ92191.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 45-1]
 gi|315285806|gb|EFU45246.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 110-3]
 gi|315298006|gb|EFU57275.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 16-3]
 gi|324013986|gb|EGB83205.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 60-1]
 gi|331043571|gb|EGI15709.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M605]
          Length = 225

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 81  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 201 NLLRKLNVRSRVAATIL 217


>gi|323491663|ref|ZP_08096841.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323314025|gb|EGA67111.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 225

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  + + A  +LT RE   L+    G ++ +IAE + +S  TV ++L     KL   NR 
Sbjct: 152 VDSQTTPATVDLTIRELQILRCLISGSSNTQIAEDMFISEFTVKSHLQKIFKKLCVKNRA 211

Query: 223 QAIAKAIRF 231
           QA + A + 
Sbjct: 212 QAASWARQH 220


>gi|260428797|ref|ZP_05782774.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260419420|gb|EEX12673.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 206

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +++   A  LT+RE   L+   +G +++EIA  L L+  T+  ++ +   KL+  NR Q
Sbjct: 136 EEEKHPLAERLTKRELEVLRGLSEGKSNKEIARDLDLTEPTIKLHMKTLYRKLEVNNRTQ 195

Query: 224 AIAKAIRFGY 233
           A   A   G 
Sbjct: 196 AAIVARDEGL 205


>gi|312140502|ref|YP_004007838.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311889841|emb|CBH49158.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 220

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G ++ EIAE+L ++  TV  ++G    KL   +R QA+  A   
Sbjct: 155 ETLTPREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYES 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|254488074|ref|ZP_05101279.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214044943|gb|EEB85581.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 218

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +  A   C            +R     +LTERE + L     G +++E+A  L +SV TV
Sbjct: 127 MQGAQYLCTGAQGSLQPKDDER----ESLTEREQTILLQLAQGQSNKEVALTLDISVRTV 182

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +  +   KL   +       A+  G +
Sbjct: 183 ETHRKNIKRKLGISSTAGLTRYAMEHGVL 211


>gi|62737761|gb|AAX98178.1| response regulator [Streptomyces aizunensis]
          Length = 201

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 48/109 (44%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    L   V   A G      +   +LF+ R      L++RE   LQL 
Sbjct: 92  AGAAGYLLKGSSRDELVQAVKAAARGETVLTPSLAPKLFRARVVEPPALSDREREVLQLV 151

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T+ +I  +L +S  TV  +L  +  KL   +R  A+  A++ G +
Sbjct: 152 SLGLTNADIGRQLFISEATVKTHLLRSFKKLSVSDRTAAVITALKLGLL 200


>gi|298247238|ref|ZP_06971043.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549897|gb|EFH83763.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 939

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             A      +     +        L+ RE   L+L   G ++++IAE L ++  TV  ++
Sbjct: 849 QPAAPPAHLESEPSSRLPQPLLDPLSAREQEVLRLLARGASNQDIAEALVVATSTVKHHI 908

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+A NR QA+A+A   G +
Sbjct: 909 SNILSKLEATNRTQAVARARALGLL 933


>gi|253996742|ref|YP_003048806.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983421|gb|ACT48279.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 212

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    L   +        L+ RE         G T+ EIAE L LS  TV  +L +
Sbjct: 131 VAQQMAIQQLSGDQN---PVDVLSPREFEVFMALAKGKTTNEIAETLFLSPRTVGTHLYN 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+A N  +    A+R G +
Sbjct: 188 IKQKLNANNSAEIALIAMRSGLL 210


>gi|225857575|ref|YP_002739086.1| response regulator [Streptococcus pneumoniae P1031]
 gi|225725289|gb|ACO21141.1| response regulator [Streptococcus pneumoniae P1031]
          Length = 199

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIARGLSNQEIADQLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|213580328|ref|ZP_03362154.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 190

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 4/180 (2%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107
           +     LHN    +            D  L   +     +I  +     +          
Sbjct: 3   KPEAYVLHNISNSTHQQYLEH-FQPLDPLLP--SRFGQQVITVATMTPGICARHRHYYHE 59

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     I   +R G      +      +  ++E  + A      +     +  ++ 
Sbjct: 60  FMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIPFSSEERLRAQAVQPLLGLAIHDSLQED 118

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  A  LT +E   + +  +G +++ IA +L +S+ TV  +L +   K + +NR + +++
Sbjct: 119 NDLASILTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 178


>gi|116071519|ref|ZP_01468787.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116065142|gb|EAU70900.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 92

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
               +L+ RE   +QL  +G T++EIA++L +S  TV+ ++ +   K  + NR+  +  +
Sbjct: 9   PLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWS 68

Query: 229 IRFGYIC 235
           +  G IC
Sbjct: 69  MDNGKIC 75


>gi|328885811|emb|CCA59050.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 260

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              + R    + +TERE   L+L  +G++S+EI + L +S  TV  +  +   KL   +R
Sbjct: 186 RAEQGRPLPDKAVTEREEEILKLVAEGHSSKEIGDLLVISPKTVERHRANLLQKLGMRDR 245

Query: 222 IQAIAKAIRFGYI 234
           ++    AIR G I
Sbjct: 246 LELTRYAIRVGLI 258


>gi|269797048|ref|YP_003316503.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269099233|gb|ACZ23669.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 221

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            V                 LTERE     L   G T+++IA +L +S HT   ++     
Sbjct: 138 YVHQQAPRADAWEGDGLGRLTEREREVFLLVAAGRTNQDIAAELVISTHTAKTHVNRIMT 197

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           K+D  +R   +  A   G +
Sbjct: 198 KVDVRDRAHLVILAYESGLV 217


>gi|152987869|ref|YP_001346413.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963027|gb|ABR85052.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7]
          Length = 222

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 56/215 (26%), Gaps = 13/215 (6%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              +      + A     Y I+        +    +L                   D  L
Sbjct: 11  QRCMQAFTQVVPASLCVFYRIDREY-----RAHDFQLLRMPASMHRDYLRH-YRDYDPLL 64

Query: 78  -FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT- 135
             H  +   P++               L             +    R        +    
Sbjct: 65  PRHCLASASPVVPLRQGMARQDARHTALYQGFLRRHGVCDVVEVLARAQDRPVAALSLLR 124

Query: 136 ----SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
                 F     + +   HG        +++           LT RE     L  DG ++
Sbjct: 125 GTELGAFSGHDLQQLQALHGLMELAAQAWVD-EPAHGDRLHGLTPRERQIALLLRDGVSN 183

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + +A +LGL + TV  +L +   K  A NR + + 
Sbjct: 184 KCLARQLGLGLPTVKTHLLNLFRKTGAHNRTELVR 218


>gi|269839567|ref|YP_003324259.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791297|gb|ACZ43437.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 218

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYL 209
           G   +++ +  +   +       LTERE   L+L   G  +++E+AE+L LS +TV  +L
Sbjct: 126 GLARKLLREMSKPAGRAEREPEVLTEREQEILELLVQGVTSNKELAERLILSENTVKYHL 185

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL   NR Q +A A++ G +
Sbjct: 186 RNILDKLHLQNRTQVVAYALQHGLV 210


>gi|300857740|ref|YP_003782723.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685194|gb|ADK28116.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302330034|gb|ADL20228.1| Response regulator [Corynebacterium pseudotuberculosis 1002]
          Length = 221

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             LT RE   L+L   G ++ EIA +L +S+ TV  ++G    K  + +R+ A+  A
Sbjct: 164 EPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHAVLFA 220


>gi|146279180|ref|YP_001169338.1| aldose 1-epimerase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557421|gb|ABP72033.1| Aldose 1-epimerase [Rhodobacter sphaeroides ATCC 17025]
          Length = 207

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 28/232 (12%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +T +  S+L +  P    +         +   +      P  +  +     +  +     
Sbjct: 1   MTLRSFSALTDQEPLFRDLAPAG-----SYVALRVGFLAPEEESNL-----FPSEWIRFY 50

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG--IAFPVR 123
                   D       +      W S+             +          G  I  P R
Sbjct: 51  TTHAYGMKDPLTRWAATANGATRWSSVTLPDEAG-----VMAAYRLHGLRYGCVIGLPAR 105

Query: 124 LGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
           +   +   + IF      + N  I                L +  +     LT+ +   L
Sbjct: 106 ISRSRKRTFGIFARSDREMTNAEIGALRA----------SLAELHAPERDALTQSQAEVL 155

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  +G   +EIA +LG++   V A   +A  +L A   +QA   A + G +
Sbjct: 156 RMLSEGVRYKEIAWRLGITEGAVKARFKAACQRLGARTAVQAANIAQKRGLL 207


>gi|324989912|gb|EGC21854.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
          Length = 199

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KL+A NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|260577934|ref|ZP_05845864.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603954|gb|EEW17201.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
          Length = 227

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           +G              V    +   + +           ++                 LT
Sbjct: 99  SGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRREPVELDLPDPLT 158

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   LQL   G +++EIA+KL +S+ TV  ++G    K  + +R+ A+  A +   +
Sbjct: 159 PRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHAVLFAFKHHLV 217


>gi|325964357|ref|YP_004242263.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470444|gb|ADX74129.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 241

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 157 ITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                    +    A    LT RE   L     G  + EIA KL LS  TV  ++    +
Sbjct: 159 HFSSRAADGQSVPTADISVLTAREREVLGAMAVGLKNAEIANKLFLSETTVKTHVHRILL 218

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +R QA+A A R G I
Sbjct: 219 KLGLSDRSQAVAVAYRSGLI 238


>gi|300787274|ref|YP_003767565.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796788|gb|ADJ47163.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 213

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 36/76 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + + L       +    LT RET  L+L   G T+ +I  +L +S  TV  +L     KL
Sbjct: 134 LVNHLRSPAPAPAEPELLTPRETQVLRLVARGLTNADIGRELHISETTVKTHLVRMFAKL 193

Query: 217 DAVNRIQAIAKAIRFG 232
           +  +R  A+  A++ G
Sbjct: 194 EVGDRTAAVTVAMQRG 209


>gi|21222053|ref|NP_627832.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256786858|ref|ZP_05525289.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770753|ref|ZP_06530131.1| two-component system regulator [Streptomyces lividans TK24]
 gi|4753862|emb|CAB42025.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
 gi|289700952|gb|EFD68381.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 221

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +++   L     +A  +LT+RET  L L   G ++ EIAE+L ++  T+  ++    VKL
Sbjct: 141 LSETPRLMPSAQAAYGDLTDRETEVLVLIAQGLSNGEIAERLVVAESTIKTHVSRILVKL 200

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA   A     +
Sbjct: 201 GLRDRTQAAVFAYEARLV 218


>gi|324006555|gb|EGB75774.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 57-2]
          Length = 223

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 14/134 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 81  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQA 224
           +   KL+  +R+ A
Sbjct: 201 NLLRKLNVRSRVAA 214


>gi|256397990|ref|YP_003119554.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256364216|gb|ACU77713.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 221

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 39/121 (32%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG +  +         V            +                   +    A   
Sbjct: 96  LRAGASGFLLKDAPAAELVHAVRVVAAGDALLAPSVTRRLIADFAARRPADQSGPVAVAA 155

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L   G +++EIA +L L+  TV  ++     K    +R QA+  A   G 
Sbjct: 156 LTPRELDVLRLIARGLSNQEIAGELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGL 215

Query: 234 I 234
           +
Sbjct: 216 V 216


>gi|297564548|ref|YP_003683520.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296848997|gb|ADH62012.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 204

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L +   +   +LT +E   L     G +++ IA+ LG+S  T+  ++ S   KL+
Sbjct: 129 AAVRLLARPARNPLASLTPKEREVLTHLARGMSNKAIAQALGVSEKTIKTHVSSLLAKLN 188

Query: 218 AVNRIQAIAKAIRFGY 233
              R QA   A   G 
Sbjct: 189 LKGRTQAALLAREQGL 204


>gi|329768816|ref|ZP_08260247.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325]
 gi|328839589|gb|EGF89164.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325]
          Length = 199

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    L+ +E   L    +G +++EI+ +L LS  T+  Y+ +   KL+  NR
Sbjct: 127 ELMENIFTNHNPLSNQEKILLAKVKEGLSNKEISSELYLSEGTIRNYISNILTKLNCKNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+ KA   G+I
Sbjct: 187 TEAVKKATEEGWI 199


>gi|293375961|ref|ZP_06622221.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325841957|ref|ZP_08167534.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|292645398|gb|EFF63448.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325489790|gb|EGC92145.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 214

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+E+E   ++    G T++EIA KL LS  T+  ++ +   KL+  +R Q    A + G
Sbjct: 153 RLSEKELMIIREIATGLTNKEIAAKLFLSEGTIKNHITNILFKLELRDRTQIAIFAFKNG 212

Query: 233 Y 233
            
Sbjct: 213 L 213


>gi|256395226|ref|YP_003116790.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361452|gb|ACU74949.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 235

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L     G ++ EIA  + +   TV  ++     KLD  +R+QA+  A   
Sbjct: 167 DTLTDREREVLAHLARGLSNSEIAAHIYIGEGTVKTHVSRILAKLDLRDRVQAVVYAYES 226

Query: 232 GYI 234
           G +
Sbjct: 227 GLV 229


>gi|297563008|ref|YP_003681982.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847456|gb|ADH69476.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 241

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               ++I +F EL K+ S+         LT RET  L+L      + EI E+L ++ +TV
Sbjct: 150 AMATKLIGEFAELAKQESAPPSRTTIPELTRRETEVLKLLARSLNNREIGERLFITENTV 209

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++     KL   +R +A   A+R  Y+
Sbjct: 210 KNHVRKILEKLQVHSRTEAAIYAVRAEYV 238


>gi|284043982|ref|YP_003394322.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948203|gb|ADB50947.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 43/96 (44%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                + A + ++    A   +        +  + A   L+ RE   L+L   G  +  I
Sbjct: 116 AGVTAVAAGDAVLSPRVAATMLARMRASGRQTAARARAQLSPREQEVLRLVAGGMDNAAI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A++L +S HTV  ++ S   KL   NRIQA  +A+R
Sbjct: 176 AQELFISPHTVKNHISSILTKLHVANRIQAAVRAVR 211


>gi|125718762|ref|YP_001035895.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323350426|ref|ZP_08086089.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498679|gb|ABN45345.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           sanguinis SK36]
 gi|322123363|gb|EFX95041.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|327462857|gb|EGF09179.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
          Length = 199

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KL+A NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|59713015|ref|YP_205791.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio
           fischeri ES114]
 gi|59481116|gb|AAW86903.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio
           fischeri ES114]
          Length = 214

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +  +     ++I  + E      S + +LT RE+  L+L   G ++ +IA  L +S +T
Sbjct: 121 EMWLSRKIISELIFTYREKQNAILSTSISLTTRESEILRLLASGASNLDIANSLFVSENT 180

Query: 205 VNAYLGSATVKLDAVNRIQAIAKA 228
           V  +L +   KL+  NR+QA+  A
Sbjct: 181 VKTHLYNVFKKLNVKNRLQAMMWA 204


>gi|324992362|gb|EGC24283.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
          Length = 199

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KL+A NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEQGWL 199


>gi|229488619|ref|ZP_04382485.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
 gi|229324123|gb|EEN89878.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
          Length = 288

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
           +  +    ++    +                   L           +    +A    + A
Sbjct: 143 REFEIRDEVDRRVAMLDTAAVEHGSNRDAQISEGLTESVLALGEIAANLEDMALSAQVLA 202

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             A  + +           +    L+ RE   +     G  + EIAE+L LSV T+  Y+
Sbjct: 203 VEAKLRALASPKPSANTPVANTVVLSPREREVMGYVALGLRNAEIAERLSLSVETIKTYM 262

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KLD  +R +A+ +A R G I
Sbjct: 263 RNLMGKLDVRSRHEAVVEARRQGLI 287


>gi|269125551|ref|YP_003298921.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310509|gb|ACY96883.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 215

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++       +     A  LTERE   ++L   G T+EEIA +L +S+ TV  +LG+   
Sbjct: 135 RLLAHLTRPQRPARRPAEPLTERELQVVRLVARGRTNEEIAGELFVSLSTVKTHLGNVQR 194

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A NR++  A A   G +
Sbjct: 195 KLAARNRVEIAAWAWESGIV 214


>gi|134098945|ref|YP_001104606.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911568|emb|CAM01681.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 45/113 (39%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR G          +  L+ A   +     A        +       S+   LTERE   
Sbjct: 115 VRRGARGYVVKDVDTTELVRAIRAVARGESAFDSRSAAAMVHSMNNRSSEPELTERELGV 174

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G ++ +I  +L +S  T   ++ +   KLD   R +A+ +A + G I
Sbjct: 175 LRLLAAGSSNRQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 227


>gi|318061908|ref|ZP_07980629.1| two component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078461|ref|ZP_07985793.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 224

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 130 GYVIFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
              +  +  ++ A + ++                    K +   + LTERET  L L   
Sbjct: 113 PADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPAPGKPALRLKALTERETEVLTLVAR 172

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ EIAE L L+  TV  ++     KL   +R QA+  A   G +
Sbjct: 173 GRSNAEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 219


>gi|298242293|ref|ZP_06966100.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555347|gb|EFH89211.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 197

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184
               GY++  +    L   +   A G           L    ++  +  L+ERE   L L
Sbjct: 82  AGATGYILKDAPREQLFAAIRTVAQGKSVFAPEVVTRLLRHMQTPPSSVLSERELEVLAL 141

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G G +++E A  L +S  T+ ++L     KL   +R  A+  A+  G +
Sbjct: 142 VGRGASNKEAARSLFISEATIKSHLLRIFGKLGVEDRTAAVTVALEKGML 191


>gi|284050625|ref|ZP_06380835.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
 gi|291567571|dbj|BAI89843.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 208

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L+L  +G ++ EIAE L LS +T+  ++     KL   +R+     A+R G 
Sbjct: 148 LSPRELEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGL 207

Query: 234 I 234
           +
Sbjct: 208 V 208


>gi|262370436|ref|ZP_06063762.1| two component transcriptional regulator [Acinetobacter johnsonii
           SH046]
 gi|262314778|gb|EEY95819.1| two component transcriptional regulator [Acinetobacter johnsonii
           SH046]
          Length = 228

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RET  L L   G ++ EIAE+L +S +TV +++     KL    R +A++ A   
Sbjct: 166 DQLTNRETEILNLVAQGLSNREIAEQLFVSRYTVESHIKHIYRKLSVSKRTKAVSTARSL 225

Query: 232 GYI 234
           G +
Sbjct: 226 GIL 228


>gi|256420538|ref|YP_003121191.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035446|gb|ACU58990.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 198

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  +V+  F             L+ RE   L    +G T ++IAE   +SV TV +++ 
Sbjct: 113 LAVQKVLAFFNRKNAGSQDHRYGLSPRELEVLDCLVNGDTYKKIAEHCHISVGTVRSHIM 172

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KLD  +R  AI KA++   +
Sbjct: 173 NIYRKLDVNSRSGAIVKAMQERLV 196


>gi|189466603|ref|ZP_03015388.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM
           17393]
 gi|189434867|gb|EDV03852.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM
           17393]
          Length = 275

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            + +     +     +++       +       LT  E S L+    G T++EIA +  L
Sbjct: 175 ASRKERFICNHVSNLLLSGSSVAPARPVPKDDLLTPAERSILKEIALGKTTKEIAAERNL 234

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S HTVN++  +   KL   N  +A   A++ G +
Sbjct: 235 SFHTVNSHRKNIFRKLGVNNAHEATKYAMKAGIV 268


>gi|156743203|ref|YP_001433332.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156234531|gb|ABU59314.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 222

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V  +F  L   +   A  LTERE   L L  +G+ +  IA++L LS  TV   L     
Sbjct: 136 RVFDEFRRLSIDQD--AEQLTERERDILTLLAEGHDNRTIAQRLFLSEKTVGNRLSEIFQ 193

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   NR QA   A++ G I
Sbjct: 194 KLGVSNRTQAALVAVQRGLI 213


>gi|32141276|ref|NP_733677.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|256784694|ref|ZP_05523125.1| response regulator [Streptomyces lividans TK24]
 gi|289768580|ref|ZP_06527958.1| response regulator [Streptomyces lividans TK24]
 gi|1542943|emb|CAA69209.1| redZ [Streptomyces coelicolor A3(2)]
 gi|24429546|emb|CAD55237.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|289698779|gb|EFD66208.1| response regulator [Streptomyces lividans TK24]
          Length = 217

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             + +T +      ++     LT RET  L L   G T+ E+A  L +S  TV +++   
Sbjct: 126 AQEALTRYWRSKAPKNLRPE-LTPRETEVLLLLTQGKTNTEMAATLSVSPTTVRSHVHRI 184

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL A  R QA+A A   G +
Sbjct: 185 LRKLGAATRAQAVAIAYESGLL 206


>gi|21225370|ref|NP_631149.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783610|ref|ZP_05522041.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767492|ref|ZP_06526870.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7688304|emb|CAB89760.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289697691|gb|EFD65120.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGD 187
           V+      + A + ++        +             AA      LTERE   + LA  
Sbjct: 113 VLLAGIRTVAAGDSLLSPTATRALITRFLASPTDDVPLAAPERLALLTEREREVMALAAL 172

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G +++EIA+ L +S  TV +++  A  KL+A +R Q +  A + G +
Sbjct: 173 GKSNQEIADHLVVSPLTVRSHVSRAMTKLNARDRAQLVVIAYQSGLV 219


>gi|297194566|ref|ZP_06911964.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152332|gb|EDY66387.2| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 58/197 (29%), Gaps = 4/197 (2%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           I+   + P  ++ +        D   +   + E  G        +    ++ +       
Sbjct: 28  IDVVGEAPDGRKGVEVSRTTHPDVVLMDVRMPEMDGLAAARELLNPPTAVVHRPKVLMLT 87

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                             +G              V   +    L    +           
Sbjct: 88  TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRIVAAGEALLAPSVTR--RLIADFA 143

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                  +  S     LT RET  L+L   G +++EIA  L L+  TV  ++G    KLD
Sbjct: 144 AQRPAPRRDPSLRLNGLTPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLD 203

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R QA+  A   G +
Sbjct: 204 LRDRAQAVIFAYESGLV 220


>gi|239929933|ref|ZP_04686886.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438267|ref|ZP_06577657.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341162|gb|EFE68118.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 221

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +++   L     +A  +LTERET  L L   G ++ EIAE+L ++  T+  ++    VKL
Sbjct: 141 LSETPRLMPSAQAAYGDLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKL 200

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA   A     +
Sbjct: 201 GLRDRTQAAVFAYEARLV 218


>gi|229542987|ref|ZP_04432047.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
 gi|229327407|gb|EEN93082.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
          Length = 511

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 153 CYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             +++  FL+     ++      L+ RE   LQL  DG ++ E AE L LS +TV  Y+ 
Sbjct: 427 AGELLAKFLKANQWDEKQPELVQLSAREIHILQLLADGASTTEAAEMLHLSEYTVRDYVS 486

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   +L A NR +A  KA+R G I
Sbjct: 487 SLMKRLHARNRTEAAVKAMRLGLI 510


>gi|226310381|ref|YP_002770275.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093329|dbj|BAH41771.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 199

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              NGY++  S    LA+ +     G          EL  +       LTERE   L L 
Sbjct: 94  AGANGYLLKDSPSEELASSIRSIMAGRRIYA----PELVDEAYGQENPLTEREKEVLLLV 149

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  ++EIA +L ++  TV  Y+     KL   NRI+AI  +   G+
Sbjct: 150 ADGKNTKEIASQLYITTGTVRNYISVILDKLGVSNRIEAIMHSKEKGW 197


>gi|148656116|ref|YP_001276321.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148568226|gb|ABQ90371.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 220

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V  +F  L   +   A  LTERE   L L   GY +  IA++L LS  TV   L     
Sbjct: 135 KVFDEFRRLSVDQD--AEQLTERERDILTLLAAGYDNRTIAQRLFLSEKTVGNRLSEIFQ 192

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   NR QA   A++ G I
Sbjct: 193 KLGVSNRTQAALVAVQRGLI 212


>gi|37519842|ref|NP_923219.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210833|dbj|BAC88214.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 224

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 97  VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156
            +  S   S R+         +      G +           L+ A  +++  +    Q 
Sbjct: 76  RLFRSKDPSARILMVADDEEQVMLAFHAGANGCLLKSVQGHELLNAVGLVLSGYLVFGQA 135

Query: 157 ITDFLELFK------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           IT  +   +      + + +   LT RE   L L     T+ EIA++L +S  TV+++  
Sbjct: 136 ITRLVAEEQGTGKFGRAAGSVPRLTAREHEVLMLIAQELTNNEIAKRLYISPRTVDSHRA 195

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   N    +  A   G +
Sbjct: 196 RLMGKLGTRNTAGLVRIAAECGLL 219


>gi|317050571|ref|YP_004111687.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316945655|gb|ADU65131.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 224

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 20/163 (12%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +      ++  +L+  +         +   +       G V+            A+  +I
Sbjct: 53  LDINLPDKNGMELAEDILRKHGLVKILFLTMHDEPEYVGRVLHIGAAGYILKNAADTELI 112

Query: 148 EAHGACYQ--------VITDFLELFKKR--------SSAARNLTERETSCLQLAGDGYTS 191
            A  A  +        ++ +      ++        +    +L++RET  LQL   GYT 
Sbjct: 113 NAIRAVKRGEFVLQRGLMENIARQKSRKLSGHTIEAAPPKASLSKRETEVLQLIALGYTQ 172

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +E+A++LG+S+ T+  +  +    L    R + +  A+  G I
Sbjct: 173 QEVADQLGISIKTIETHKANIMESLGTKKRSELVRYALAHGLI 215


>gi|224583267|ref|YP_002637065.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467794|gb|ACN45624.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 238

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 94  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 153

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 154 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 213

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +RI A   
Sbjct: 214 NLLRKLNVRSRIAATIL 230


>gi|217978486|ref|YP_002362633.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503862|gb|ACK51271.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 209

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                G++  +S    LA  +     G  Y   +D     K+  + A  LT R+ + L L
Sbjct: 97  NCGAAGFIPKSSSMEDLAAALKQVLDGGVYIPGSDEAR-EKRGPAEADALTPRQLAVLGL 155

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              G +++EIA  L +S  TV  ++ +   KL    R QAI  A + 
Sbjct: 156 LSAGKSNKEIARALSISDLTVKVHITTIFRKLGVATRTQAIV-AFQR 201


>gi|308187897|ref|YP_003932028.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1]
 gi|308058407|gb|ADO10579.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1]
          Length = 215

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ----------- 155
           +L    L    + F V          +       L  ++  EA                 
Sbjct: 72  QLREIALSGRVVVFSVSDNEEDVVSALKRGADGYLLKDMEPEALLKALHQAAAGQIVLSE 131

Query: 156 -----VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                ++    E    ++     LT RE   LQL  DG T++ IA KL +S  TV  ++ 
Sbjct: 132 ALTPILVARLRESQPAQTRDISQLTRRERDILQLISDGMTNKAIARKLDISESTVKVHVK 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               K++  +R++A   A++ G 
Sbjct: 192 YLLKKINLKSRLEAAVWALQNGL 214


>gi|298370036|ref|ZP_06981352.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281496|gb|EFI22985.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 219

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            L  + +       + V +    +  +  +    LT RE   L     G++++ IA+KL 
Sbjct: 118 ALNGDNVFSPEMTAHLVKSLISPIQPQSDAHIGTLTPRERETLHHLAIGHSNKVIAKKLN 177

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L+  TV AY+ S   KL   +R+QA   AI+ 
Sbjct: 178 LAESTVKAYVQSILRKLGLSSRVQAAVYAIQH 209


>gi|300780243|ref|ZP_07090099.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300534353|gb|EFK55412.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 212

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  +   +LT RE   LQL   G ++ EI ++L LS  TV ++L     KL   +R
Sbjct: 140 RLQTRDRTPRSSLTPRELEVLQLVAGGSSNREIGQRLMLSEATVKSHLVHIYDKLGVRSR 199

Query: 222 IQAIAKAIRFGYI 234
             A+A A   G +
Sbjct: 200 TSAVASAREQGVL 212


>gi|124516028|gb|EAY57537.1| putative two component transcriptional regulator, LuxR family
           [Leptospirillum rubarum]
          Length = 211

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +     L     +    L+ RET  L+L   G ++ EI +  G+S+ TV A++ 
Sbjct: 130 AIAHLALNRIRVLDY--PANDNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQ 187

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KL A  R  A  KAI+ G I
Sbjct: 188 SILEKLSASTRADAAVKAIKKGLI 211


>gi|172062446|ref|YP_001810097.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994963|gb|ACB65881.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 514

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200
            + +A      +I     + ++ +  A      LT RE     L   G   +EIA +LGL
Sbjct: 398 AMQDASWFSRTLIEKLANVRRENAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGL 457

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 458 APNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|114765164|ref|ZP_01444308.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542439|gb|EAU45466.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 204

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLA 185
              G+V  T     L N V   A G  Y  I       + +    A++LT+RE   L+  
Sbjct: 96  GAAGFVPKTLPAKSLVNAVRFMAMGEQYAPIAFMTAAEEVEEHPLAKSLTKREMEVLKGL 155

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +G +++EIA  L ++  T+  ++ +   KLD  NR QA   A   G 
Sbjct: 156 TEGKSNKEIARDLEITEPTIKLHVKTLYRKLDVNNRTQAAIVARDAGI 203


>gi|115359991|ref|YP_777129.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285279|gb|ABI90795.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 514

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200
            + +A      +I     + ++ +  A      LT RE     L   G   +EIA +LGL
Sbjct: 398 AMQDASWFSRTLIEKLANVRRENAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGL 457

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 458 APNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|23336584|ref|ZP_00121794.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
 gi|189440631|ref|YP_001955712.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|312133936|ref|YP_004001275.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689868|ref|YP_004209602.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691808|ref|YP_004221378.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189429066|gb|ACD99214.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|291516417|emb|CBK70033.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bifidobacterium longum subsp.
           longum F8]
 gi|311773230|gb|ADQ02718.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|320456664|dbj|BAJ67286.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461204|dbj|BAJ71824.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 231

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228

Query: 232 GYI 234
             +
Sbjct: 229 RIV 231


>gi|325675879|ref|ZP_08155563.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553850|gb|EGD23528.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 222

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G ++ EIAE+L ++  TV  ++G    KL   +R QA+  A   
Sbjct: 157 ETLTPREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYES 216

Query: 232 GYI 234
           G +
Sbjct: 217 GLV 219


>gi|239981000|ref|ZP_04703524.1| response regulatory protein [Streptomyces albus J1074]
 gi|291452866|ref|ZP_06592256.1| response regulatory protein [Streptomyces albus J1074]
 gi|291355815|gb|EFE82717.1| response regulatory protein [Streptomyces albus J1074]
          Length = 219

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 36/109 (33%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +     +    LT RE   L+  
Sbjct: 110 AGATGYLLKAERPEELFTAIRAAASGRTALSPPVAQRVMTHLRNPQPELTPRERDILRHL 169

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA  L +S  TV  +LG    KL    R  A+A       +
Sbjct: 170 TQGLGNREIARALFISEATVKTHLGRIYQKLGVETRAGAVAVGKERRLL 218


>gi|118465644|ref|YP_883262.1| response regulator receiver domain-containing protein
           [Mycobacterium avium 104]
 gi|118166931|gb|ABK67828.1| response regulator receiver domain [Mycobacterium avium 104]
          Length = 221

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 19/233 (8%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
            +  T      + +       +   +    FA+      +   +R+  +       +D  
Sbjct: 2   TDDATPTTVMVVDDHPIWRDAVARDLAESGFAVVATADGVATAQRRAGVVRPDVVVMDM- 60

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
            +P+          L    S  + ++  S + + V+++    +          A +A  V
Sbjct: 61  QLPDGDGAQATAAVLAVSPSSRVLVLSASDERDDVLQAVKAGAAGYLVKSASKAELAQAV 120

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETS 180
                       +                    V+ ++  + +          LT+RET 
Sbjct: 121 TDTAAGRAVFTPS----------------LAGLVLGEYRRIAQSKDDGPTRPRLTDRETE 164

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L+    G ++++IAEKL LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 165 VLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|198276206|ref|ZP_03208737.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135]
 gi|198271018|gb|EDY95288.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135]
          Length = 213

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 39/76 (51%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D L   +K  +    LT+ E   L+    G +++EIA +  LS++TV  +  +   KL+ 
Sbjct: 131 DLLREEEKEQNRMAPLTQTEKEILRAMALGKSTKEIAAERFLSIYTVATHRKNIFRKLEV 190

Query: 219 VNRIQAIAKAIRFGYI 234
            N  +AI  A+R G +
Sbjct: 191 NNAHEAIRYALRAGIV 206


>gi|163755204|ref|ZP_02162324.1| response regulator [Kordia algicida OT-1]
 gi|161324624|gb|EDP95953.1| response regulator [Kordia algicida OT-1]
          Length = 213

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++ +  E  K + +    LT RE   L+L      ++EIAE L +SV+TV ++  +
Sbjct: 129 RLTEILLNTSEESKNKQATHVKLTPREIDILKLIAQNKKTKEIAELLFISVNTVQSHKKN 188

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  +  + +  AI+  +I
Sbjct: 189 LYSKLNIHSVSELVTYAIQHKFI 211


>gi|91782650|ref|YP_557856.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91686604|gb|ABE29804.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 292

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 83/229 (36%), Gaps = 24/229 (10%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L+ L  ++  +    +A++             R++  +  + ++  D   I + 
Sbjct: 10  AERRDGLKALLRQIDRLARFNEAQD----WRQVERPLKRQRPDLLVI-DW-QDWMSIADT 63

Query: 68  LIE--TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                 Y D  +      + P+  + + +E V+    + +       +  A     +   
Sbjct: 64  RHLLSHYPDLRIAVLTDQISPVSVRELMDEGVLGVVPRDTDPCL---IVRAFEMVLLGGH 120

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           +   G +        L  +          +   +      +R+  A  L+ R+   ++  
Sbjct: 121 YVPPGALAL---DPPLPPD-------IAIRPFDEK-SPPPRRTKLANGLSPRQQQIMRCV 169

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T++ IA  LG+S  TV  +L S   +L A NR  A+  A+  G++
Sbjct: 170 HMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|317127430|ref|YP_004093712.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472378|gb|ADU28981.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 211

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 42/89 (47%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +        +V+   ++   +      +LT RE   ++  G+G +++EIA +L LSV TV
Sbjct: 123 LSLQDHVAAKVMPRLIKQSTEEVKVDPSLTPRELDIIRKIGEGRSNKEIAMQLSLSVGTV 182

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++     KL+  +R Q    AI+   +
Sbjct: 183 KNHISIILDKLELRDRTQIAIYAIKHHVV 211


>gi|255746558|ref|ZP_05420505.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS
           101]
 gi|262158852|ref|ZP_06029965.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE
           91/1]
 gi|262168521|ref|ZP_06036217.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27]
 gi|255736312|gb|EET91710.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS
           101]
 gi|262023050|gb|EEY41755.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27]
 gi|262029425|gb|EEY48076.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE
           91/1]
          Length = 201

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L   + 
Sbjct: 73  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 132

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 133 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 192

Query: 227 KAIRF 231
             +  
Sbjct: 193 LYLER 197


>gi|297193607|ref|ZP_06911005.1| response regulatory protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151843|gb|EFH31371.1| response regulatory protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 207

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               GY++       L   +   A G            + + R +A  +LT+RE   L  
Sbjct: 97  AGATGYLLKAERPEELFAAIRAAAQGRTALSAPVASRVMDRMRGAAGPSLTDRERDILGQ 156

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + EIA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 157 LARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKEQRLL 206


>gi|293415492|ref|ZP_06658135.1| two-component system [Escherichia coli B185]
 gi|291433140|gb|EFF06119.1| two-component system [Escherichia coli B185]
          Length = 225

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 81  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SERVNQYLHEREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 201 NLLRKLNVRSRVAATIL 217


>gi|297203493|ref|ZP_06920890.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714466|gb|EDY58500.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 239

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 13/158 (8%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145
           P+        T+   +  L +           +  P  L     GY+   +    +   +
Sbjct: 87  PVRCSIEDLATMAARTRVLVLSGADE----EAVIVPA-LRAGVRGYLRKGASQQEILRCL 141

Query: 146 IIEAHGACYQVITDFLELF--------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            + A G     +     L         +  ++A   LTERE   L     GYT+  IA  
Sbjct: 142 HVIAAGGAAFGVGTAERLSSFFDGAQPETSNAAFPFLTERERQVLDFLARGYTNRRIART 201

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235
           L LS  TV  ++     KL   +R +A  +A   G  C
Sbjct: 202 LVLSEKTVRNHVSHLLAKLQVNDRTEAALRAKEAGLGC 239


>gi|162456402|ref|YP_001618769.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
 gi|161166984|emb|CAN98289.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
          Length = 233

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               V+    +   + S     LT RE   L+L   G ++ E A +L +S  TV  +   
Sbjct: 149 IAGAVVRAMRKPASEGSGGLDALTPRERQVLRLLAAGVSTRETAARLTISPKTVETHRVR 208

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   + ++    A+R G I
Sbjct: 209 IYAKLGCKSAVELTRIAVRTGLI 231


>gi|70729936|ref|YP_259675.1| sensory box transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344235|gb|AAY91841.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 495

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKL 198
           EV+ +A      +I     +   RS+ A       LT RE   L L   G   +EIA +L
Sbjct: 395 EVMRDASWFSQTLIEKLANVRNTRSAQAPAVTSAELTTREREVLGLIYQGLADKEIAAQL 454

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L+ +TV  ++ +   KLD  +R +AI  A   G 
Sbjct: 455 QLAPNTVRNHVATLYSKLDVHSRGEAIVWARERGL 489


>gi|325695633|gb|EGD37533.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 199

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|300784747|ref|YP_003765038.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794261|gb|ADJ44636.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  ++             A+  LTERE   L+L   G ++ EIA +L + V TV  ++G
Sbjct: 130 AAIRRLAAQHAPAPAGDGLASAGLTERERDVLRLVAAGLSNVEIASELYVGVQTVKTHVG 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL A +R QA+ +A   G++
Sbjct: 190 NVLAKLGARDRTQAVIRAYDSGFV 213


>gi|317482156|ref|ZP_07941179.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916390|gb|EFV37789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 232

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228

Query: 232 GYI 234
             +
Sbjct: 229 RIV 231


>gi|297564146|ref|YP_003683119.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848595|gb|ADH70613.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 17/160 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +          ++  R+         +A  V         V+           ++   + 
Sbjct: 64  LDVHLPGGGGVEVLRRVLAQHPQIRFLALSVSDAAEDVIGVVRGGARGYVTKTISGRELA 123

Query: 148 EAH------------GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEI 194
           +A                  V+  F              LT+RE   L+    GY  +E+
Sbjct: 124 DAIVRVADGDAVFSPRLAGFVLDAFSATDAPPVDPELDRLTQREREVLRHIARGYAYKEV 183

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L +SV TV  ++ S   KL   NR +    A     +
Sbjct: 184 AKELFISVKTVETHVSSVLRKLQLSNRHELSRWATARRLV 223


>gi|227508387|ref|ZP_03938436.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227192037|gb|EEI72104.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 219

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R+L++RE     L   GYT++EIA +L +S  TV A+  S   KL   +R + +  A+  
Sbjct: 155 RSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPELVRYAVHH 214

Query: 232 GYI 234
             I
Sbjct: 215 HLI 217


>gi|221635975|ref|YP_002523851.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157551|gb|ACM06669.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 213

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +++     L+  + S L+L   G ++ EIA++L LS +TV  Y+     +L A NR
Sbjct: 140 RLRNRKAITDIPLSPHQLSVLRLIAQGLSNREIADRLFLSENTVKGYVQEVLRRLGARNR 199

Query: 222 IQAIAKAIRFGYI 234
           ++A+  A   G++
Sbjct: 200 LEAVMIANERGWL 212


>gi|307313911|ref|ZP_07593526.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306899185|gb|EFN29823.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 254

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 46/96 (47%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +     A   +     A  Q  ++ ++L +K       LT RET  L L   G  ++ I
Sbjct: 146 AALLRRSAPRGLAGGLAAQKQASSEDIDLERKIDFGQDLLTMRETQVLDLICVGMQNKII 205

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A++LGLS +TV  ++ +   K++  NR +A A+  R
Sbjct: 206 ADRLGLSENTVKVHVRNIYKKMNVRNRTEAAARYFR 241


>gi|237718329|ref|ZP_04548810.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229452262|gb|EEO58053.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 255

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G  S+EIA  L +S++TVN +  +   KL A N I+A+  A R 
Sbjct: 191 EPLTNRELEVLRLMKQGLLSKEIANTLKVSINTVNTHRQNILQKLKANNSIEAVNFAQRL 250

Query: 232 GY 233
           G 
Sbjct: 251 GL 252


>gi|297561144|ref|YP_003680118.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845592|gb|ADH67612.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 218

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 42/133 (31%), Gaps = 16/133 (12%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------------QVITDFL 161
           I              +              E I+ A    +             +     
Sbjct: 80  IVLTTFDNDDYVWGALRAGAHGFLLKRTPPEDILAAIRLAHRGDTLLFPTALRHLAATQP 139

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 + A   LT+RE+  L L   G T+ EIA++L L   TV  ++     KL   +R
Sbjct: 140 AAPTPAARAVATLTQRESQTLTLMAQGLTNAEIADRLFLGTETVKTHVSHILTKLGVRDR 199

Query: 222 IQAIAKAIRFGYI 234
            QA+  A   G I
Sbjct: 200 TQAVIAAYDSGLI 212


>gi|294056650|ref|YP_003550308.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615983|gb|ADE56138.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 208

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            + L +E I+E                   +     L+ RE   L L   G +++++A+K
Sbjct: 110 DIELLHEAIVEVAAGGTYFPASIARTMSAHTEDQD-LSARELQVLHLVAAGSSNKDVADK 168

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S+ TV  ++ +   KL   +R Q +  AIR G +
Sbjct: 169 LSISLPTVKMHMTNIMKKLSVYDRTQLVIAAIRKGIV 205


>gi|224283771|ref|ZP_03647093.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 277

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + R      L+ RE   ++L   GYT +E+A +L +S+ TV  ++ +   KL   NR +
Sbjct: 207 ARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRTE 266

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 267 LTRWAADRRIV 277


>gi|153837454|ref|ZP_01990121.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149749254|gb|EDM60039.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|328470183|gb|EGF41094.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 217

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               +                 +     +++    + +  +     LT RE   L     
Sbjct: 112 DKVMMGLKGILNGENWLSRDILNQLIGHLLSLNNTVGELETKLEMELTRREMQVLSALCQ 171

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G ++ +IA+ L +S HTV ++L S   KL+  NR+QAI  A R 
Sbjct: 172 GGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215


>gi|238898060|ref|YP_002923741.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465819|gb|ACQ67593.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 243

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 13/186 (6%)

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +          D  +    + +    W        +        ++        G  F
Sbjct: 50  WFEFYIQNKYQNIDPIIIMSLNRITSFSWDENIM-INLNLKLSKIFKMSKTYNITHGYTF 108

Query: 121 PVRLGFHKNGYVIFTSEFLMLAN--EVIIE----AHGACYQVITDFL------ELFKKRS 168
            V    +    +   ++   +A   E+II            V    L      ++   + 
Sbjct: 109 IVHDHKNNLALLSMMADQDYIAALNELIISNKDKLQTLLITVHDKMLFLYKEMDIKHHKR 168

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                 + RE   L  +  G T EEIA  LG+ + TV  ++G+   KL  +N   AI   
Sbjct: 169 EDKEMFSTRENEILYWSSVGKTYEEIAMILGIKLGTVKFHMGNVVKKLGVINGKHAIRLG 228

Query: 229 IRFGYI 234
           +    I
Sbjct: 229 VELKLI 234


>gi|254430340|ref|ZP_05044043.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001]
 gi|197624793|gb|EDY37352.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001]
          Length = 99

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 42/80 (52%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +   +    + + S  R+L+ERE   + L  +G T++EIA  L +S  TV+ ++ +   K
Sbjct: 5   LHGAWSMGRELQQSQERDLSERELEIIALVAEGLTNQEIAGTLTISKRTVDNHVSNIFTK 64

Query: 216 LDAVNRIQAIAKAIRFGYIC 235
             A NR+  +  A+  G IC
Sbjct: 65  TGAKNRVALLNWAMDHGKIC 84


>gi|153211868|ref|ZP_01947715.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587]
 gi|153800895|ref|ZP_01955481.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3]
 gi|153824326|ref|ZP_01976993.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2]
 gi|153829689|ref|ZP_01982356.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39]
 gi|229514128|ref|ZP_04403589.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21]
 gi|229528499|ref|ZP_04417890.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           12129(1)]
 gi|124116944|gb|EAY35764.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587]
 gi|124123605|gb|EAY42348.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3]
 gi|148874810|gb|EDL72945.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39]
 gi|149741880|gb|EDM55909.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2]
 gi|229334861|gb|EEO00347.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           12129(1)]
 gi|229348108|gb|EEO13066.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21]
          Length = 208

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L   + 
Sbjct: 80  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 139

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 140 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199

Query: 227 KAIRF 231
             +  
Sbjct: 200 LYLER 204


>gi|56421302|ref|YP_148620.1| hypothetical protein GK2767 [Geobacillus kaustophilus HTA426]
 gi|56381144|dbj|BAD77052.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 500

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +L+ RE   L+L  +G ++ E A++L LS +TV  Y+ +   K++A NR +
Sbjct: 430 RSDLVQPTPHLSPREIEVLKLVAEGASTYEAAKRLHLSEYTVRDYVSAILQKMNAKNRTE 489

Query: 224 AIAKAIRFGYI 234
           AI KAIR G I
Sbjct: 490 AIVKAIRDGII 500


>gi|306830765|ref|ZP_07463929.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427112|gb|EFM30220.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 198

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    L+++E   LQL   G T++EIA+ L LS  TV  Y+ S   KL A NR
Sbjct: 126 ELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNR 185

Query: 222 IQAIAKAIRFGYI 234
           ++A   A   G++
Sbjct: 186 VEATRIAEEHGWV 198


>gi|296160668|ref|ZP_06843483.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295889194|gb|EFG68997.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 292

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 83/229 (36%), Gaps = 24/229 (10%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L+ L  ++  +    +A++             R++  +  + ++  D   I + 
Sbjct: 10  AERRDGLKALLRQIDRLARFNEAQD----WRQVERPLKRQRPDLLVI-DW-QDWMSIADT 63

Query: 68  LIE--TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                 Y D  +      + P+  + + +E V+    + +       +  A     +   
Sbjct: 64  RHLLSHYPDLRIAVLTDQISPVSVRELMDEGVLGVVPRDTDPCL---IVRAFEMVLLGGH 120

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           +   G +        L  +          +   +      +R+  A  L+ R+   ++  
Sbjct: 121 YVPPGALAL---DPPLPPD-------IAIRPFDEK-SPPPRRTKLANGLSPRQQQIMRCV 169

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T++ IA  LG+S  TV  +L S   +L A NR  A+  A+  G++
Sbjct: 170 HMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|302545305|ref|ZP_07297647.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462923|gb|EFL26016.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 209

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    L   V   A G      +   +L + R +    L+ RE   L+L 
Sbjct: 100 AGAAGYLLKGSSRQELIGAVQTAARGETVLTPSLAGKLLRTRVAEPSPLSGRECEVLRLV 159

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G G T+ EI  KL ++  TV  +L  +  KL   +R  A+  A+  G +
Sbjct: 160 GQGLTNAEIGAKLFVAEATVKTHLLRSFKKLGVSDRTAAVMTAMERGLL 208


>gi|255035483|ref|YP_003086104.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948239|gb|ACT92939.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 207

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSA 170
               + I   ++ G           + ++ A +  +E     C +      E        
Sbjct: 83  HNERSVIMSMLQSGASGYVLKNAIGDDIVAALQAAMEGQIYLCAETQKALNEAPGTEPKE 142

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   L+L G GYT+++IA +L +S HTV ++  +   K    N    +  A  
Sbjct: 143 IPRLTRREKEILELIGQGYTTQQIAAELFISTHTVESHRKNLKEKFGVPNTATVVRMAAE 202

Query: 231 FGY 233
            G 
Sbjct: 203 LGL 205


>gi|90579871|ref|ZP_01235679.1| putative nitrate/nitrite response regulator protein [Vibrio
           angustum S14]
 gi|90438756|gb|EAS63939.1| putative nitrate/nitrite response regulator protein [Vibrio
           angustum S14]
          Length = 208

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 11/134 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157
            + +    +    +   V         V+              + +IE         +  
Sbjct: 68  LIAMRDEGILACIVILTVSDSRSDIKTVLNAGADGYLLKDTEPDELIEQLKSALCGGKAY 127

Query: 158 TDFLE--LFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +D ++  L    +       LT+RET  LQ    G  + +IAE+L +S  TV  ++ S  
Sbjct: 128 SDIVKECLESPNTPTNILSQLTDRETQILQEVAKGQRNRQIAEQLFISEATVKVHMKSLL 187

Query: 214 VKLDAVNRIQAIAK 227
            KL   +R  A   
Sbjct: 188 KKLQVKSRTAATIL 201


>gi|323968034|gb|EGB63445.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|327252458|gb|EGE64117.1| response regulator [Escherichia coli STEC_7v]
          Length = 215

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIAAVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|291459358|ref|ZP_06598748.1| putative nitrate/nitrite response regulator protein NarL
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417957|gb|EFE91676.1| putative nitrate/nitrite response regulator protein NarL
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 220

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                ++   L   +K+      LTERE    +L   GYT+ EI+ +L ++  T   ++ 
Sbjct: 122 FYSAALVDPRLSEEEKKLGT---LTEREREVYELMCQGYTNLEISARLFITEGTAKRHVS 178

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL + NR++A+ ++ + GY+
Sbjct: 179 NILSKLGSKNRVEAVIQSGQKGYL 202


>gi|288923880|ref|ZP_06417961.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344773|gb|EFC79221.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 222

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARN-----L 174
           +R G         + E L+ A  V+          +T  L      +            L
Sbjct: 97  LRAGAAGFLLKDASRERLVEAIRVLHAGDALLSPAVTRRLVETFAARTRPPTPPGLLDLL 156

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   G ++ EIA +L ++  TV +++G+   KL   +R+QA+  A   G +
Sbjct: 157 TPREREVLVLVARGLSNTEIAGRLVVTEATVKSHVGAILTKLGLRDRVQAVVLAYENGVV 216


>gi|271968610|ref|YP_003342806.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511785|gb|ACZ90063.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 155 QVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +++          +      LTERE   ++L   G T++E+A +L +S+ TV  +LGS  
Sbjct: 135 RLLEHLAHPRSGGARPLTEPLTERELDVVRLVARGRTNQEVAAELFVSLSTVKTHLGSIQ 194

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL A NR++  A A   G +
Sbjct: 195 AKLGARNRVEIAAWAWESGVV 215


>gi|153820697|ref|ZP_01973364.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           B33]
 gi|126521740|gb|EAZ78963.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           B33]
          Length = 195

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L   + 
Sbjct: 67  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 126

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 127 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 186

Query: 227 KAIRF 231
             +  
Sbjct: 187 LYLER 191


>gi|314968011|gb|EFT12110.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           HL037PA1]
          Length = 77

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A A  
Sbjct: 6   AEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYE 65

Query: 231 FGYI 234
            G I
Sbjct: 66  SGLI 69


>gi|297538080|ref|YP_003673849.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257427|gb|ADI29272.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 212

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    L   +        L+ RE         G T+ EIAE L LS  TV  +L +
Sbjct: 131 VAQQMAIQQLSGDQN---PVDVLSPREFEVFMALAKGKTTNEIAETLFLSPRTVGTHLYN 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+A N  +    A+R G +
Sbjct: 188 IKQKLNANNSAEIALIAMRSGLL 210


>gi|260655487|ref|ZP_05860975.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi
           E3_33 E1]
 gi|260629935|gb|EEX48129.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi
           E3_33 E1]
          Length = 212

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L+ RE   L  A  G +S+E+A +L +S  TV  +L S   KL A N+ +A+  A++
Sbjct: 142 TEALSPREREVLLCAARGLSSKEVAAQLYISERTVQTHLASVYDKLGAHNKTEAMLLALK 201

Query: 231 FGY 233
            G 
Sbjct: 202 HGL 204


>gi|238788099|ref|ZP_04631894.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
 gi|238723686|gb|EEQ15331.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
          Length = 194

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L    +    I   V    +    +I              E+++E      +        
Sbjct: 57  LRNEGVDARIIVLTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRHAAKGEKVFSNE 116

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 117 VAQYLSSRHEQVNPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 176

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 177 NVRSRVAATIM 187


>gi|229490268|ref|ZP_04384110.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229322800|gb|EEN88579.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 224

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 155 QVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
            +IT FL +  +  S +     LT RE   + L   G +++EIA +L +S  T   ++  
Sbjct: 135 ALITRFLSIPSRADSTSGIFGQLTPRELEVVTLVAMGMSNDEIAAELVISAVTAKTHVNR 194

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
           A  KLD  +R Q +  A + G +
Sbjct: 195 AMTKLDVRDRAQLVVLAYQCGLV 217


>gi|159898419|ref|YP_001544666.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891458|gb|ABX04538.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 867

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIAEK 197
            +   HG    +I   L  F KR             L+ERE   LQ    G T  EI E+
Sbjct: 768 QLASDHGFNSPLIKHALIEFAKRQPSVQPQTHTLERLSERELEVLQQIATGLTDREIGER 827

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS++TV  +  +   KL+  NR QA+A+A   G +
Sbjct: 828 LYLSMYTVKVHARNIYAKLEVSNRTQAVARARTLGLL 864


>gi|90021218|ref|YP_527045.1| XRE family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89950818|gb|ABD80833.1| transcriptional regulator, XRE family [Saccharophagus degradans
           2-40]
          Length = 227

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 157 ITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           IT       + +  A     LTER+   L     G +++EIA +L +S  TV  ++ +  
Sbjct: 145 ITHAASPAPQTAPPATGDHQLTERQLHVLHEMLKGLSNKEIARELNMSPSTVKVHVAAIL 204

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            + +  NR QA+A A +   I
Sbjct: 205 REFNVKNRTQAVAHARQKNII 225


>gi|83646727|ref|YP_435162.1| transcriptional regulator NarL [Hahella chejuensis KCTC 2396]
 gi|83634770|gb|ABC30737.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 212

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 15/138 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-----------A 149
              +    +    I   V                      +  E I+E            
Sbjct: 69  LRAIRAAGVDSRIIMLTVSDNEADVVNCFRAGADGYLLKDMEPEDILEKIKQVTLGKMAI 128

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                +++   L    + +  + +LT RE   L     G++++ IA  L +S  TV  ++
Sbjct: 129 SERLTEILASALRKPVEAADPSASLTSREYEILTRIAQGHSNKVIARDLNISDGTVKVHV 188

Query: 210 GSATVKLDAVNRIQAIAK 227
                K+   +R++A   
Sbjct: 189 KHILKKMGMRSRVEAAVW 206


>gi|107025864|ref|YP_623375.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692952|ref|YP_838485.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737783|ref|YP_001779043.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895238|gb|ABF78402.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116650952|gb|ABK11592.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169819971|gb|ACA94553.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 302

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  A +      L                
Sbjct: 61  TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFARERVESLYLHEAFT--PATYRGDYV 118

Query: 67  ILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQL-SVRLEGGLLPFA 116
                  D          +PI+W         +   +   +  +     ++        +
Sbjct: 119 RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDDAPSVSPAALDGFLQTMQDDGMCS 178

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 179 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 237

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 238 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 297

Query: 230 RFGYI 234
           +   I
Sbjct: 298 KLELI 302


>gi|332280465|ref|ZP_08392878.1| transcriptional regulator [Shigella sp. D9]
 gi|332102817|gb|EGJ06163.1| transcriptional regulator [Shigella sp. D9]
          Length = 158

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 89  RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 148

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 149 TALRMG-VC 156


>gi|327251604|gb|EGE63290.1| transcriptional regulator, LuxR family protein [Escherichia coli
           STEC_7v]
          Length = 148

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 79  RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 138

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 139 TALRMG-VC 146


>gi|326334296|ref|ZP_08200514.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325947905|gb|EGD40027.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 211

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  +    L   +   A G      +    L ++ +S A  ++ RE   L+L
Sbjct: 100 DAGAAGYLLKDAPPDELFRAIRGTARGETVLAPSVATRLLQRAASPAPKVSPREVEILRL 159

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  ++E+A +L +S  TV ++L     KL    R  A+A AI    +
Sbjct: 160 LAKGLGNKEMARELLVSEATVKSHLSHIYTKLGVDTRAGAVATAIERRIL 209


>gi|317501835|ref|ZP_07960020.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896725|gb|EFV18811.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 199

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LT+RE   ++  G G T  EIA++L +S  T+  ++ S   KL A N I+A  K
Sbjct: 129 PPLLDPLTDREAEIIKAIGTGKTKHEIAQELYISERTLYNHIQSIYDKLGAKNAIEAYNK 188

Query: 228 AIRFGYI 234
           AI  GYI
Sbjct: 189 AIALGYI 195


>gi|312972929|ref|ZP_07787102.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
 gi|310332871|gb|EFQ00085.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
          Length = 123

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 54  RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 113

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 114 TALRMG-VC 121


>gi|307310532|ref|ZP_07590180.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|306909427|gb|EFN39922.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|323183401|gb|EFZ68798.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1357]
          Length = 147

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 78  RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 137

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 138 TALRMG-VC 145


>gi|300936213|ref|ZP_07151149.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300458670|gb|EFK22163.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
          Length = 221

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 152 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 211

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 212 TALRMG-VC 219


>gi|300898079|ref|ZP_07116447.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|301027468|ref|ZP_07190805.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|331674332|ref|ZP_08375092.1| putative 2-component transcriptional regulator [Escherichia coli
           TA280]
 gi|300358217|gb|EFJ74087.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300394976|gb|EFJ78514.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|323966643|gb|EGB62075.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|331068426|gb|EGI39821.1| putative 2-component transcriptional regulator [Escherichia coli
           TA280]
          Length = 221

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 152 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 211

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 212 TALRMG-VC 219


>gi|298251862|ref|ZP_06975665.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546454|gb|EFH80322.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 42/82 (51%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+ +  +  +  ++    L+ERE   L+L  DG ++ EIA +L +S  TV  ++ +
Sbjct: 134 VAARVVHELRKSKQTSTNPFAELSERELDVLRLIADGRSNAEIASRLSISEKTVKGHVSN 193

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL  ++R QA   A + G 
Sbjct: 194 ILSKLYLLDRTQAAVFAWQQGL 215


>gi|293412200|ref|ZP_06654923.1| predicted protein [Escherichia coli B354]
 gi|291468971|gb|EFF11462.1| predicted protein [Escherichia coli B354]
          Length = 210

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 201 TALRMG-VC 208


>gi|293416096|ref|ZP_06658736.1| response regulatory protein ygeK [Escherichia coli B185]
 gi|331654339|ref|ZP_08355339.1| putative 2-component transcriptional regulator [Escherichia coli
           M718]
 gi|291432285|gb|EFF05267.1| response regulatory protein ygeK [Escherichia coli B185]
 gi|331047721|gb|EGI19798.1| putative 2-component transcriptional regulator [Escherichia coli
           M718]
          Length = 210

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 201 TALRMG-VC 208


>gi|218706350|ref|YP_002413869.1| hypothetical protein ECUMN_3185 [Escherichia coli UMN026]
 gi|293406343|ref|ZP_06650269.1| predicted protein [Escherichia coli FVEC1412]
 gi|298382079|ref|ZP_06991676.1| response regulatory protein ygeK [Escherichia coli FVEC1302]
 gi|331664414|ref|ZP_08365320.1| putative 2-component transcriptional regulator [Escherichia coli
           TA143]
 gi|218433447|emb|CAR14349.1| conserved hypothetical protein, putative Bacterial regulatory
           protein LuxR family [Escherichia coli UMN026]
 gi|284922792|emb|CBG35880.1| putative two-component response regulator [Escherichia coli 042]
 gi|291426349|gb|EFE99381.1| predicted protein [Escherichia coli FVEC1412]
 gi|298277219|gb|EFI18735.1| response regulatory protein ygeK [Escherichia coli FVEC1302]
 gi|323978530|gb|EGB73612.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|331058345|gb|EGI30326.1| putative 2-component transcriptional regulator [Escherichia coli
           TA143]
          Length = 210

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 201 TALRMG-VC 208


>gi|157157590|ref|YP_001464190.1| LuxR family transcriptional regulator [Escherichia coli E24377A]
 gi|209920305|ref|YP_002294389.1| hypothetical protein ECSE_3114 [Escherichia coli SE11]
 gi|300815723|ref|ZP_07095947.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300820647|ref|ZP_07100798.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300906614|ref|ZP_07124305.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|301302994|ref|ZP_07209121.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|309793907|ref|ZP_07688332.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331678834|ref|ZP_08379508.1| putative 2-component transcriptional regulator [Escherichia coli
           H591]
 gi|157079620|gb|ABV19328.1| transcriptional regulator, LuxR family [Escherichia coli E24377A]
 gi|209913564|dbj|BAG78638.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300401653|gb|EFJ85191.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300526911|gb|EFK47980.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300531652|gb|EFK52714.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300841658|gb|EFK69418.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|308122314|gb|EFO59576.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|315256718|gb|EFU36686.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|323160002|gb|EFZ45966.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|323162555|gb|EFZ48405.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|323163404|gb|EFZ49231.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|324021194|gb|EGB90413.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|331073664|gb|EGI44985.1| putative 2-component transcriptional regulator [Escherichia coli
           H591]
          Length = 148

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 79  RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 138

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 139 TALRMG-VC 146


>gi|157162307|ref|YP_001459625.1| LuxR family transcriptional regulator [Escherichia coli HS]
 gi|170018901|ref|YP_001723855.1| two component LuxR family transcriptional regulator [Escherichia
           coli ATCC 8739]
 gi|157067987|gb|ABV07242.1| transcriptional regulator, LuxR family [Escherichia coli HS]
 gi|169753829|gb|ACA76528.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|323941628|gb|EGB37808.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|332344746|gb|AEE58080.1| response regulator protein [Escherichia coli UMNK88]
          Length = 210

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 201 TALRMG-VC 208


>gi|89109637|ref|AP_003417.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|170082422|ref|YP_001731742.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|256024645|ref|ZP_05438510.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B]
 gi|307139537|ref|ZP_07498893.1| DNA-binding transcriptional regulator [Escherichia coli H736]
 gi|85675670|dbj|BAE76923.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|169890257|gb|ACB03964.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|326339074|gb|EGD62889.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. 1044]
 gi|326343044|gb|EGD66812.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. 1125]
          Length = 147

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 78  RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 137

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 138 TALRMG-VC 145


>gi|20141967|sp|Q46791|YGEK_ECOLI RecName: Full=Putative uncharacterized response regulatory protein
           ygeK
          Length = 210

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 201 TALRMG-VC 208


>gi|15832966|ref|NP_311739.1| hypothetical protein ECs3712 [Escherichia coli O157:H7 str. Sakai]
 gi|168747683|ref|ZP_02772705.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168753777|ref|ZP_02778784.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168759967|ref|ZP_02784974.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168766832|ref|ZP_02791839.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168775716|ref|ZP_02800723.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168778853|ref|ZP_02803860.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168799972|ref|ZP_02824979.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|195936460|ref|ZP_03081842.1| hypothetical protein EscherichcoliO157_08342 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808850|ref|ZP_03251187.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208813228|ref|ZP_03254557.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208818554|ref|ZP_03258874.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209398226|ref|YP_002272320.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217327388|ref|ZP_03443471.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254794795|ref|YP_003079632.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|20140955|sp|P58664|YGEK_ECO57 RecName: Full=Uncharacterized response regulatory protein ygeK
 gi|13363184|dbj|BAB37135.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768739|gb|EDU32583.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188017817|gb|EDU55939.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189003396|gb|EDU72382.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189358682|gb|EDU77101.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189363784|gb|EDU82203.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189369373|gb|EDU87789.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189377667|gb|EDU96083.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|208728651|gb|EDZ78252.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208734505|gb|EDZ83192.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208738677|gb|EDZ86359.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209159626|gb|ACI37059.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209747612|gb|ACI72113.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|209747614|gb|ACI72114.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|209747616|gb|ACI72115.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|217319755|gb|EEC28180.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254594195|gb|ACT73556.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|320189186|gb|EFW63845.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. EC1212]
          Length = 210

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 141 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 200

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 201 TALRMG-VC 208


>gi|15803376|ref|NP_289409.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|261226155|ref|ZP_05940436.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256590|ref|ZP_05949123.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|300950599|ref|ZP_07164501.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300958180|ref|ZP_07170334.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301026137|ref|ZP_07189611.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|301643812|ref|ZP_07243849.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|331643538|ref|ZP_08344669.1| DNA-binding response regulator, LuxR family [Escherichia coli H736]
 gi|12517351|gb|AAG57968.1|AE005514_5 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|887806|gb|AAA83037.1| ORF_f148 [Escherichia coli]
 gi|299879832|gb|EFI88043.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|300315132|gb|EFJ64916.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300450079|gb|EFK13699.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|301077845|gb|EFK92651.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|315137458|dbj|BAJ44617.1| putative 2-component transcriptional regulator [Escherichia coli
           DH1]
 gi|323935789|gb|EGB32092.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|331037009|gb|EGI09233.1| DNA-binding response regulator, LuxR family [Escherichia coli H736]
          Length = 148

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 79  RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 138

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 139 TALRMG-VC 146


>gi|28900213|ref|NP_799868.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365852|ref|ZP_05778348.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260880775|ref|ZP_05893130.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260896515|ref|ZP_05905011.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|28808524|dbj|BAC61701.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308089272|gb|EFO38967.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092579|gb|EFO42274.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308114985|gb|EFO52525.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
          Length = 217

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               +                 +     +++    + +  +     LT RE   L     
Sbjct: 112 DKVMMGLKGILNGENWLSRDILNQLIGHLLSLNNTVGELETKLEMELTRREMQVLSALCQ 171

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G ++ +IA+ L +S HTV ++L S   KL+  NR+QAI  A R 
Sbjct: 172 GGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215


>gi|288904765|ref|YP_003429986.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|288731490|emb|CBI13044.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
          Length = 198

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    L+++E   LQL   G T++EIA+ L LS  TV  Y+ S   KL A NR
Sbjct: 126 ELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNR 185

Query: 222 IQAIAKAIRFGYI 234
           ++A   A   G++
Sbjct: 186 VEATRIAEEHGWV 198


>gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 14/228 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALD---FPRRQQLICELHNYDLDSGDIPNILIE 70
           + +       ++  ++   F +   ++A +     ++      + +  +   D    L +
Sbjct: 8   VDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDIMMPQVDGYQFLKQ 67

Query: 71  TYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
              D  L       LP+I+   + +  + +      +   L     P   IA    L   
Sbjct: 68  LRDDPRLA-----SLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLLEK 122

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQLA 185
           +        E      E+   AH       ++T    + +       +LT RE S L L 
Sbjct: 123 RISQTTVAGEDSENM-EIAKLAHEIAKIKDLLTPRTGISQTPPPFTIDLTPREQSVLNLV 181

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             G  ++EIA KL  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 182 AQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|239621538|ref|ZP_04664569.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515413|gb|EEQ55280.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 231

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228

Query: 232 GYI 234
             +
Sbjct: 229 RIV 231


>gi|169627165|ref|YP_001700814.1| nitrate/nitrite response transcriptional regulatory protein NarL
           [Mycobacterium abscessus ATCC 19977]
 gi|169239132|emb|CAM60160.1| Possible nitrate/nitrite response transcriptional regulatory
           protein NarL (LuxR family) [Mycobacterium abscessus]
          Length = 215

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF---------HKNGYVIFTSEF 138
               +          Q++  +    LP   +                    G++   S  
Sbjct: 55  DVALVDYRMPELDGTQVAAAVRRDELPTRVLLLSAHDDAAIVYRALEEGAAGFLSKESTR 114

Query: 139 LMLANEVIIEAHGACYQVITDFL----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             L   V+  A G      +       E+ K+   A  +L+ RE   L++   G T   I
Sbjct: 115 TELVGAVLDCARGRDVVAASLTAGLAGEIRKRAQPAGPSLSTREREVLRMIAAGQTVPAI 174

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  L L+  TV  ++     KL   +R  A+A+A+R G +
Sbjct: 175 ARALFLAPSTVKTHVQRLYEKLGVGDRAAAVAEAMRRGLL 214


>gi|118473768|ref|YP_890456.1| two-component system, regulatory protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|118175055|gb|ABK75951.1| two-component system, regulatory protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 216

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSA 170
            L    +   V  G          +  L+ A   I     A   +     +     R+  
Sbjct: 93  FLDEDLVVRAVHAGARGYVVKDVDTTELVRAIRAISSGDSAFDSRSAAAVVRSLSGRTEP 152

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+RE   L+L   G ++ +I EKL +S  T   ++ +   KLD   R +A+  A +
Sbjct: 153 REQLTDREIEVLRLLAAGLSNNKIGEKLFISATTAKFHVSNIMRKLDVSRRAEAVYAASK 212

Query: 231 FGYI 234
            G I
Sbjct: 213 RGLI 216


>gi|269956981|ref|YP_003326770.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305662|gb|ACZ31212.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 937

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 9/152 (5%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
           +W ++    + E   Q  V   G            R G          +    L   V  
Sbjct: 788 VWSALFAAELGEGPWQAVVDAHGPAHLRPYAL--WRDGEALVDAGDRAAARDRLEAAVAE 845

Query: 148 EAHGACYQVITDFLELFKK-------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
             H     V      L ++       R +A   LT RE   L L  +G T+ +IA +L +
Sbjct: 846 AEHIGAGLVTAKARALLRRAGLTAGGRVTAPDALTAREEQVLALVAEGLTNGQIAARLFI 905

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           SV TV+ ++ +   KL   +R +A  K +R G
Sbjct: 906 SVKTVSVHVSAILRKLGVSSRTEAALKGVRKG 937


>gi|326331829|ref|ZP_08198116.1| putative LuxR-family regulator [Nocardioidaceae bacterium Broad-1]
 gi|325950326|gb|EGD42379.1| putative LuxR-family regulator [Nocardioidaceae bacterium Broad-1]
          Length = 973

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               +      +          +       ++ +      K++ + +  LT RE+  L L
Sbjct: 863 RATGDVAASRVTADKARETARRLGLQPLLDELRSLGATAVKQQPATSTALTPRESEILTL 922

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++ EI ++L +S  TV+ ++ +   KL A +R +A A A R   I
Sbjct: 923 VAAGRSNGEIGKQLFISTKTVSVHVSNILGKLGAGSRTEAAAIARRQQLI 972


>gi|323703023|ref|ZP_08114679.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532036|gb|EGB21919.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 213

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTE++ S  +L   G  + EIAE+L LS +T+  ++ +   KL+  NRI  +AK +    
Sbjct: 153 LTEQQISIAKLVAQGLKNREIAEQLYLSENTIKFHIQNIMRKLNVNNRIALVAKLLEKDI 212

Query: 234 I 234
           I
Sbjct: 213 I 213


>gi|311280044|ref|YP_003942275.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308749239|gb|ADO48991.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 216

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   L     G ++ EIA  L +S +TV  ++ +   KL   NR QA+  A R 
Sbjct: 156 ELTRREKEILCKLRQGASNIEIAHLLFISENTVKTHIYNLFKKLSVKNRTQAVFWANRN 214


>gi|302517773|ref|ZP_07270115.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302426668|gb|EFK98483.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 219

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 4/115 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179
           L    +G+++  +    + + V + A G           L      +  +    LT RE 
Sbjct: 96  LRAGADGFLLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADHHGGRAPAPFPGLTGREG 155

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G ++ EIA +L +   TV  ++ +   KL A +R QA+  A   G++
Sbjct: 156 EVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210


>gi|170697201|ref|ZP_02888295.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137821|gb|EDT06055.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 518

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200
            + +A      +I     + +  +  A      LT RE     L   G   +EIA +LGL
Sbjct: 398 AMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGL 457

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 458 APNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|291300805|ref|YP_003512083.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570025|gb|ADD42990.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L  +G ++ +IA ++ LSV TV  ++ +   KL   NR+QA   A R G
Sbjct: 151 RLTRREREVLVLIAEGMSNSDIAARMFLSVGTVKDHVSAILTKLGINNRVQAALLAERAG 210

Query: 233 YI 234
            +
Sbjct: 211 IL 212


>gi|308176214|ref|YP_003915620.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743677|emb|CBT74649.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 224

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA  +LT RE   L    +G ++ EIAE+L + + TV  ++ S  +KL   +R+QAI  A
Sbjct: 150 SADADLTPREREVLAALAEGSSNAEIAEQLFIEIGTVKTHVSSIILKLGVRDRVQAIVWA 209

Query: 229 IR-FGY 233
            +  G+
Sbjct: 210 YQHHGW 215


>gi|294010385|ref|YP_003543845.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673715|dbj|BAI95233.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 265

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 79/230 (34%), Gaps = 13/230 (5%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH--NYDLDSGDIPNILIETYGDD 75
                 + +    R    + + S          +       +  +      +        
Sbjct: 32  ERLRDAVMDLCGLRTAVTHNVASREPMRDGNGAVLASEIFGFRGEEPRWWEVPQLALSSP 91

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNGYV 132
            +        P    +    T + +     + L       +  A I  P+ L F + G  
Sbjct: 92  IVHACRVEAEPFWCNAHGFFTRLPNPLLDVIDLHDFRIRAMTAAAIVVPIHLPFGQIGAA 151

Query: 133 IF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQL 184
            F       ++                   +  ++++  +      + +LT+RE  CL+ 
Sbjct: 152 SFLSPEPEANDLSDAYACAADALAVLARAFVQSYVKVTARARPGLGSISLTKREVECLRW 211

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G T+EEI   LGL   TV  ++ SA+VKLDAVNR Q + KA + G++
Sbjct: 212 AAAGKTNEEIGIILGLQRTTVRFHIRSASVKLDAVNRDQTMFKAAQLGFL 261


>gi|118616214|ref|YP_904546.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           ulcerans Agy99]
 gi|118568324|gb|ABL03075.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           ulcerans Agy99]
          Length = 216

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    LP   +                    G+++  S  
Sbjct: 56  DVALLDYRMPRMDGAQVAAAVRSNGLPTRVLLISAHDESAIVYQALQQGAAGFLLKDSTR 115

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++ +  A  L+ RE   L     G +   I
Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPMAPVLSAREREVLHRIAKGQSIPAI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL   +R  A+A+A+R G +
Sbjct: 176 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 215


>gi|238783876|ref|ZP_04627894.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
 gi|238715263|gb|EEQ07257.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
          Length = 209

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L    +    I   V    +    +I              E+++E      Q        
Sbjct: 72  LRNEGVDARIIILTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRQAAQGEKVFSDE 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 132 VALYLSSRHEQVNPFGELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 192 NVRSRVAATIM 202


>gi|325689072|gb|EGD31080.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 199

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|297203477|ref|ZP_06920874.1| two-component system regulatory protein [Streptomyces sviceus ATCC
           29083]
 gi|297148424|gb|EFH28981.1| two-component system regulatory protein [Streptomyces sviceus ATCC
           29083]
          Length = 220

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 33/74 (44%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
               +  +     LT RE     LA  G T+EEIAE + +S  T   ++  A  KL A +
Sbjct: 142 RPPDRSTAPGLECLTRREREVTALAARGLTNEEIAEHMVISPLTAKTHISRAMTKLGARD 201

Query: 221 RIQAIAKAIRFGYI 234
           R Q +  A   G +
Sbjct: 202 RAQLVVFAYESGLV 215


>gi|291298173|ref|YP_003509451.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567393|gb|ADD40358.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 220

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 152 ACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +++ DF       +      LT RE   + LA  G  +EEIAE+L +S  T   ++ 
Sbjct: 131 VARRLMRDFASRPLSPNPVDDERLTNREREVVVLAAQGLNNEEIAERLVISPTTAKTHIS 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
            A +KL   +R Q +  A   G I
Sbjct: 191 RAMIKLACRDRTQLVVYAYESGLI 214


>gi|163759735|ref|ZP_02166820.1| putative two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162283332|gb|EDQ33618.1| putative two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 217

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              NLT RE   LQL  +G +++E+   L L   T+  Y+ +   KL   NR++A   A 
Sbjct: 150 PIDNLTRREEQILQLVANGLSNKEVGAALDLQEKTIKHYMTNILQKLHVRNRVEAALLAR 209

Query: 230 RFGY 233
             G 
Sbjct: 210 DRGL 213


>gi|289665829|ref|ZP_06487410.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 199

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L L   G ++++I   L +S  TV A++ +   KL   +R  A+  A+R 
Sbjct: 133 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALRR 192

Query: 232 GYI 234
           G +
Sbjct: 193 GIL 195


>gi|227511386|ref|ZP_03941435.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523593|ref|ZP_03953642.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085337|gb|EEI20649.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089253|gb|EEI24565.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 219

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R+L++RE     L   GYT++EIA +L +S  TV A+  S   KL   +R + +  A+  
Sbjct: 155 RSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPELVRYAVHH 214

Query: 232 GYI 234
             I
Sbjct: 215 HLI 217


>gi|171913297|ref|ZP_02928767.1| two-component system regulatory protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 239

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L     GYV  +S    L + +   A G           L  +R      +T RE   L+
Sbjct: 97  LNAGAAGYVQKSSTREELLDALRRVAAGGTSLPPDLAQRLESQRIRLT--VTPREREVLE 154

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G +++ IA  +G++  TV  ++     KL   +R QA A+AIR G I
Sbjct: 155 LIASGQSNKRIAAAIGITEDTVKRHVTHILEKLGVNDRAQATAEAIRRGII 205


>gi|119714205|ref|YP_919347.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526114|gb|ABL79484.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 216

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE    +L   G ++ EI E+L +S HT   ++ S   KL    R+QA+  A   
Sbjct: 150 PALTNREREVWELVARGLSNAEITERLVISEHTTKTHVASILQKLHVRGRVQAVVLAYES 209

Query: 232 GYI 234
           G +
Sbjct: 210 GLV 212


>gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 233

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 5/223 (2%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSA---LDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +       +Q  ++  +F +   ++A    D   +      + +  +   D    L +
Sbjct: 11  VDDEPGLREAVQAYLEDSHFNVDVASNANEGWDILEKNLPDLVITDVMMPQVDGYQFLQK 70

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              +            +  + +  + +          L     P   +A    L   +  
Sbjct: 71  LREEPRFKALPVVF--LTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVNNLLERRAS 128

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
                 +        +         ++     + K  S    +LT RE S L L   G  
Sbjct: 129 AQTANGDEKTSDIAALAGQIAEIKAMLMGKNAIAKTTSVIKIDLTPREQSVLDLVARGLM 188

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++EIA  L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 189 NKEIARDLSTSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 231


>gi|288959031|ref|YP_003449372.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911339|dbj|BAI72828.1| two-component response regulator [Azospirillum sp. B510]
          Length = 244

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+R+    +L   G++++EIA  LG+   TV  ++ +   KL   NR Q    A R 
Sbjct: 178 DRLTDRQRDVFELLLAGHSNKEIARGLGVLEGTVKVHVRAIMQKLGVRNRTQVAVVAARN 237

Query: 232 G 232
           G
Sbjct: 238 G 238


>gi|288572830|ref|ZP_06391187.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568571|gb|EFC90128.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 215

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L     S A  L++RE   L L   G +++E+A  L +S +TV+ +      KLD  N  
Sbjct: 141 LDTAVPSRASLLSDREREVLALLAKGSSTKEVASSLHISKNTVDTHRRRIMEKLDCGNIA 200

Query: 223 QAIAKAIRFGYI 234
           + I  AIR G I
Sbjct: 201 ELIRFAIREGLI 212


>gi|330468817|ref|YP_004406560.1| response regulator receiver protein [Verrucosispora maris
           AB-18-032]
 gi|328811788|gb|AEB45960.1| response regulator receiver protein [Verrucosispora maris
           AB-18-032]
          Length = 211

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAAR 172
           +    L     GYV+  +    +   V + A G           L        +   A  
Sbjct: 91  SVFAALRAGARGYVLKGARRQEIVRSVRVVADGEAIFGPAIATRLMGYFAGLARNEPAFP 150

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L     T+ +IA + GLS  TV  ++ +   KL   +R QAI+ A   G
Sbjct: 151 ELTAREREILTLIAQHLTNPQIAARFGLSTKTVRNHVSNIFAKLQVADRAQAISMAREQG 210

Query: 233 Y 233
            
Sbjct: 211 L 211


>gi|302519720|ref|ZP_07272062.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. SPB78]
 gi|302428615|gb|EFL00431.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. SPB78]
          Length = 140

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 130 GYVIFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
              +  +  ++ A + ++                    K +   + LTERET  L L   
Sbjct: 29  PADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPAPGKPALRLKALTERETEVLTLVAR 88

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ EIAE L L+  TV  ++     KL   +R QA+  A   G +
Sbjct: 89  GRSNTEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 135


>gi|315505714|ref|YP_004084601.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412333|gb|ADU10450.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 221

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
               L            LT+RE   L L   G ++ EIA ++ ++  TV  ++G    KL
Sbjct: 140 FAGQLGPAPTADPRLAQLTDREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKL 199

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R+QA+  A   G +
Sbjct: 200 QLRDRVQAVVLAYESGLV 217


>gi|298345245|ref|YP_003717932.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315655667|ref|ZP_07908565.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
 gi|298235306|gb|ADI66438.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315489731|gb|EFU79358.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 233

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 4/123 (3%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +  V         +        G                 S 
Sbjct: 114 RAGARGYVTKTIATPDLVDAIVRVAGGDAAFSP----RLAGFVLDAFGAARTDMVGTDSE 169

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LTERE   ++L   G+  +EIA +L +SV TV  ++ S   KL   NR +    A  
Sbjct: 170 LDSLTEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVLRKLQLSNRYELSKWAQD 229

Query: 231 FGY 233
              
Sbjct: 230 RRI 232


>gi|260904160|ref|ZP_05912482.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brevibacterium linens BL2]
          Length = 207

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNL 174
           +R G         T+E ++ A  V+ E        +T  L           K ++    L
Sbjct: 84  LRAGASGFLLKDATAEDMITAVRVVAEGQSLLAPSVTRRLISEYVSGPKIAKDTAVLGQL 143

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   + L   G+ + E+AE L L+  TV  ++     KL   +R Q +  A   G +
Sbjct: 144 TDREIDVMTLVAKGHANAEVAEHLFLAEQTVKTHVSRILSKLGLRDRTQIVVAAYESGLV 203


>gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 210

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT  E   +Q    G ++ EIAE +G+S  TV +++ +   K    NR +    A+  G
Sbjct: 147 ELTPTEAKVIQYVARGMSNREIAEVMGVSQRTVESHVSNMLSKTGLHNRTELARWALESG 206

Query: 233 Y 233
            
Sbjct: 207 L 207


>gi|333001333|gb|EGK20901.1| response regulator [Shigella flexneri VA-6]
          Length = 215

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRTGAKGNKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            + +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|297157797|gb|ADI07509.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 220

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191
             +  ++ + + +I        +              A    +T+RE   L L G G ++
Sbjct: 113 LAAVRVVASGDALIAPSVTRRLIKEFAARPATTPPPRAELGGITDREREVLTLVGSGLSN 172

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA++L +SV T   YL     KLDA +R+Q +  A   G +
Sbjct: 173 AEIADRLCISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLV 215


>gi|291545304|emb|CBL18412.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 206

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L+       A+RN++ERE   ++L  +GY+++EIA +L LS  TV  YL S   KL  
Sbjct: 133 ELLQSSDGFDYASRNISERELDIIRLIANGYSNKEIAAELFLSEGTVRNYLSSILDKLQL 192

Query: 219 VNRIQAIAKAIRF 231
            +R Q      + 
Sbjct: 193 RDRTQVAVFYYQH 205


>gi|283786004|ref|YP_003365869.1| nitrate/nitrite response regulator protein [Citrobacter rodentium
           ICC168]
 gi|282949458|emb|CBG89071.1| nitrate/nitrite response regulator protein [Citrobacter rodentium
           ICC168]
          Length = 215

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG--------A 152
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDSASDVYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130

Query: 153 CYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             +V       ELF ++      LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNEYLRERELFGEQDDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002]
 gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002]
          Length = 232

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 41/107 (38%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
            +   +    +      E I +      Q +    +L         +LT RE S L L  
Sbjct: 124 TREAAIAEQQDGGGSNLEGIAQDLREIKQFLGQQNQLVTTPPPLKIDLTPREQSVLDLVA 183

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            G  ++EIA++L  SV  V  Y+     K    +R + +  A++ G 
Sbjct: 184 QGLMNKEIAKELETSVRNVEKYVSRLFSKTGTNSRTELVRYALKHGL 230


>gi|45658914|ref|YP_003000.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45602159|gb|AAS71637.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 223

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L+L  +G ++E I + L +S  TV  +  +   KLD       +  AIR G 
Sbjct: 161 LSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIRAGL 220

Query: 234 I 234
           I
Sbjct: 221 I 221


>gi|24216568|ref|NP_714049.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197887|gb|AAN51067.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 223

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L+L  +G ++E I + L +S  TV  +  +   KLD       +  AIR G 
Sbjct: 161 LSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIRAGL 220

Query: 234 I 234
           I
Sbjct: 221 I 221


>gi|58616457|ref|YP_195586.1| hypothetical protein p2A60 [Azoarcus sp. EbN1]
 gi|56315919|emb|CAI10562.1| hypothetical protein p2A60 [Aromatoleum aromaticum EbN1]
          Length = 432

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           +       T+ +         A  L+ +E   L+   +G++++E+A KL ++ +TV  +L
Sbjct: 348 NLRAAATRTEPVAPKGPLQDEAMRLSPKEGQILRRLAEGHSNKELARKLFVTENTVETHL 407

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL   +R QA+A+A+  G I
Sbjct: 408 RRIYGKLGIRSRTQAVARALELGLI 432


>gi|327472321|gb|EGF17752.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 199

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KL+A NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|326798146|ref|YP_004315965.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326548910|gb|ADZ77295.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 211

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 32/84 (38%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V     E           LT RE   L+   +G T+ EI E L +S HTV  +  
Sbjct: 128 YFSPEVQQSLFEAALHDPMNLPKLTRREQEVLRCIAEGKTTVEIGETLFISPHTVETHRR 187

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   K +  N    I  A ++  I
Sbjct: 188 NLMQKFEVSNAAALIRVATQYQLI 211


>gi|304390804|ref|ZP_07372756.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656419|ref|ZP_07909308.1| two component system response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304325687|gb|EFL92933.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492978|gb|EFU82580.1| two component system response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 233

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 4/123 (3%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +  V         +        G                 S 
Sbjct: 114 RAGARGYVTKTIATPDLVDAIVRVAGGDAAFSP----RLAGFVLDAFGAARTDMVGNDSE 169

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LTERE   ++L   G+  +EIA +L +SV TV  ++ S   KL   NR +    A  
Sbjct: 170 LDSLTEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVLRKLQLSNRYELSKWAQD 229

Query: 231 FGY 233
              
Sbjct: 230 RRI 232


>gi|256784749|ref|ZP_05523180.1| two-component response regulator [Streptomyces lividans TK24]
          Length = 216

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG    +      +  V      L     +         + +++              
Sbjct: 91  LHAGARGYLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRRLLEWLSESEPRPTGPPEPPDG 150

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RET  L L  +G T+ +IA +L +S  TV  ++ +   K    +R QA+  A   G 
Sbjct: 151 LTTRETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGL 210

Query: 234 I 234
           +
Sbjct: 211 V 211


>gi|229819546|ref|YP_002881072.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565459|gb|ACQ79310.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 222

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 5/136 (3%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +         V            V         ++  ++L  
Sbjct: 84  FDLDEYAFSGLRAGASGFLLKDTRPADLVDAIRTVASGDAVVSPRITRRMLELFGEYLPQ 143

Query: 164 FKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
              R           LT RE   L    +G ++ EIA++  +S  TV  ++G    KL  
Sbjct: 144 GGDRDTSASDPRLAELTPRELEVLVAVAEGLSNLEIADRFVVSEATVKTHVGRVLAKLGL 203

Query: 219 VNRIQAIAKAIRFGYI 234
            +R+QA+  A   G +
Sbjct: 204 RDRVQAVVLAYETGLV 219


>gi|157144856|ref|YP_001452175.1| transcriptional regulator NarP [Citrobacter koseri ATCC BAA-895]
 gi|157082061|gb|ABV11739.1| hypothetical protein CKO_00584 [Citrobacter koseri ATCC BAA-895]
          Length = 215

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVI 157
              L    +    I   V         +I              EV++EA  A     +V 
Sbjct: 71  LNALRRDGVTAQIIILTVSDSASDVYALIDAGADGYLLKDSDPEVLLEAIRAGANGGKVF 130

Query: 158 TDFLE--LFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +D +   L ++    A       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SDRVSEYLRERELFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|150391445|ref|YP_001321494.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951307|gb|ABR49835.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 201

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY+I ++E   +A ++ +   G           L + +      LT RE   ++L
Sbjct: 94  SAGAEGYLIKSTEVSSMAQQLRVLFSGTSVLDADVLKRLMQPQRKGFEELTPRERDIVEL 153

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              G ++ EIAE+L +S  TV   L     KL   +R Q      R 
Sbjct: 154 VVQGLSNREIAEQLYISEGTVRNTLSIILEKLQVRDRTQLAIYYWRR 200


>gi|302533866|ref|ZP_07286208.1| two component transcriptional regulator [Streptomyces sp. C]
 gi|302442761|gb|EFL14577.1| two component transcriptional regulator [Streptomyces sp. C]
          Length = 218

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 3/125 (2%)

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
                  +G              V   +    L +  I           T      ++  
Sbjct: 92  AALHGGASGFLLKDASPAMLVEAVRAAAAGDALVSPAITVRLLRDMAPRTPAARTARR-- 149

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             A  LTERE   ++    G T+ EIA +L +S+ TV  +L +   KLDA NR++  A A
Sbjct: 150 -PAEPLTERERDVVRCLARGLTNAEIAAELYVSLSTVKTHLANVQAKLDARNRVEIAAWA 208

Query: 229 IRFGY 233
              G 
Sbjct: 209 WESGL 213


>gi|256396944|ref|YP_003118508.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363170|gb|ACU76667.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 231

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            A   LT RE   L L   G ++ EI+ +L +S+ TV  ++ +   KL A +R Q + +A
Sbjct: 163 PALDGLTAREREVLTLVARGKSNTEISTELFVSMSTVKTHMSALLAKLGARDRAQLVIRA 222

Query: 229 IRFGYI 234
              G +
Sbjct: 223 YEGGLV 228


>gi|193068201|ref|ZP_03049165.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019]
 gi|192958480|gb|EDV88919.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019]
          Length = 215

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|324997340|ref|ZP_08118452.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--------AARNLTER 177
              +G++   ++   +   +   A G           L   R +            LT R
Sbjct: 113 AGASGWLSKDADAEAIGRALRSAADGVSTVDAAVLARLVASRPAGAPVAEREPPDGLTPR 172

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E   L L  +G ++ EIA +L +   TV  ++     K    +R QA+  A R G 
Sbjct: 173 EVEVLALIAEGLSNTEIARRLVVGEATVKTHVNHLFAKAGLRDRAQAVGYAYRHGL 228


>gi|261419001|ref|YP_003252683.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765817|ref|YP_004131318.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375458|gb|ACX78201.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317110683|gb|ADU93175.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 200

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTE E + L L     T+ EI E+L +S  TV  ++ S   KL   +R  A+ KA R G
Sbjct: 138 PLTEMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFRLG 197

Query: 233 YI 234
            +
Sbjct: 198 LL 199


>gi|219848672|ref|YP_002463105.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219542931|gb|ACL24669.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 219

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 43/110 (39%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V      +          ++  ++  +      Q+ T    L    +  +  LT RE   
Sbjct: 107 VDHRVLADSIRTVAGGGALIHPQITAQLLPRLSQLATPTTSLPTPSAEPSIALTPRERDI 166

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L+L   GYT++EI E L LS+ TV  +L     KL   +R QA   A   
Sbjct: 167 LRLLAQGYTNQEIGEALALSIGTVKNHLSVIFAKLAVRDRTQAALWAREH 216


>gi|329767671|ref|ZP_08259190.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341]
 gi|328839021|gb|EGF88609.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341]
          Length = 199

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    L+ +E   L    +G +++EIA +L LS  T+  Y+ +   KL+  NR
Sbjct: 127 ELMENIFTNHNPLSNQEKIILLKIKEGLSNKEIANELFLSEGTIRNYISNILTKLNCKNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+ K+   G++
Sbjct: 187 TEAVKKSTEEGWL 199


>gi|329944887|ref|ZP_08292914.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529698|gb|EGF56594.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 234

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     L+ERE   L L  D  T+++IA +L LS  TV  ++ +   KL   +R+ 
Sbjct: 164 SASPLPHGIPLSEREREVLTLVVDAKTNKQIATRLRLSEATVKTHVSAIIAKLGVQDRVG 223

Query: 224 AIAKAIRFGYI 234
           A+  A++   +
Sbjct: 224 AVVYALQHNLV 234


>gi|291300526|ref|YP_003511804.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569746|gb|ADD42711.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             R+     LT+RE+  L L   G ++ EIA +L +S  TV  ++ +   K    +R QA
Sbjct: 152 PPRTDLPDGLTKRESEVLTLIAAGRSNAEIARQLYISEATVKTHINNLFTKAALRDRAQA 211

Query: 225 IAKAIRFGY 233
           +  A R G 
Sbjct: 212 VTYAYRHGL 220


>gi|145224163|ref|YP_001134841.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315444498|ref|YP_004077377.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145216649|gb|ABP46053.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315262801|gb|ADT99542.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 217

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--LTE 176
               GY++ ++    L + V   A G           V+ +F  + +   + A    LTE
Sbjct: 99  AGATGYLVKSASKQELGDAVRATAQGRAVFTPGLAGLVLGEFRRIEQSSPAGADGPTLTE 158

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RET  L+    G T+++IA +L LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 159 RETEILRYVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQVGNRVELARYAIEHGL 215


>gi|333026466|ref|ZP_08454530.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746318|gb|EGJ76759.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 212

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 130 GYVIFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
              +  +  ++ A + ++                    K +   + LTERET  L L   
Sbjct: 101 PADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPAPGKPALRLKALTERETEVLTLVAR 160

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ EIAE L L+  TV  ++     KL   +R QA+  A   G +
Sbjct: 161 GRSNAEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 207


>gi|317126445|ref|YP_004100557.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590533|gb|ADU49830.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 209

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              L ++R +    L+ RE   L+L  +G T+ +IA  L LS  TV ++L  A  KL   
Sbjct: 134 ARRLDERRRTPQPTLSGRELDVLRLVAEGGTNRDIARALFLSEATVKSHLVHAFGKLGVT 193

Query: 220 NRIQAIAKAIRFGYI 234
           +R  A+A A   G I
Sbjct: 194 SRTAAVATARSRGLI 208


>gi|254250192|ref|ZP_04943512.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124876693|gb|EAY66683.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 376

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  A +      L                
Sbjct: 135 TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFARERVESLYLHEAFT--PATYRGDYV 192

Query: 67  ILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQL-SVRLEGGLLPFA 116
                  D          +PI+W         +   +   +  +     ++        +
Sbjct: 193 RHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDDAPSVSPAALDGFLQTMQDDGMCS 252

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 253 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLISTSRER 311

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 312 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 371

Query: 230 RFGYI 234
           +   I
Sbjct: 372 KLELI 376


>gi|121585556|ref|ZP_01675352.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           2740-80]
 gi|121725924|ref|ZP_01679224.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52]
 gi|147671981|ref|YP_001215452.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395]
 gi|153818114|ref|ZP_01970781.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457]
 gi|153820709|ref|ZP_01973376.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33]
 gi|227812241|ref|YP_002812251.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2]
 gi|229506165|ref|ZP_04395674.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX
           330286]
 gi|229509977|ref|ZP_04399457.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33]
 gi|229516462|ref|ZP_04405909.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9]
 gi|229605704|ref|YP_002876408.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           MJ-1236]
 gi|254849833|ref|ZP_05239183.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MO10]
 gi|298499474|ref|ZP_07009280.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MAK 757]
 gi|121550173|gb|EAX60187.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           2740-80]
 gi|121631689|gb|EAX64057.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52]
 gi|126511382|gb|EAZ73976.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457]
 gi|126521752|gb|EAZ78975.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33]
 gi|146314364|gb|ABQ18904.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395]
 gi|227011383|gb|ACP07594.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2]
 gi|227015263|gb|ACP11472.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395]
 gi|229346343|gb|EEO11314.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9]
 gi|229352422|gb|EEO17362.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33]
 gi|229356516|gb|EEO21434.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX
           330286]
 gi|229372190|gb|ACQ62612.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           MJ-1236]
 gi|254845538|gb|EET23952.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MO10]
 gi|297541455|gb|EFH77506.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MAK 757]
          Length = 208

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L   + 
Sbjct: 80  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 139

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 140 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199

Query: 227 KAIRF 231
             +  
Sbjct: 200 LYLER 204


>gi|21954776|ref|NP_665760.1| ANL19 [Synechococcus elongatus PCC 7942]
 gi|81230363|ref|YP_398745.1| response regulator receiver domain-containing protein
           [Synechococcus elongatus PCC 7942]
 gi|21913198|gb|AAM81148.1|AF441790_19 ANL19 [Synechococcus elongatus PCC 7942]
 gi|1575686|gb|AAB38785.1| putative NarL homolog [Synechococcus elongatus PCC 7942]
 gi|81170335|gb|ABB58673.1| response regulator receiver domain protein (CheY-like)
           [Synechococcus elongatus PCC 7942]
          Length = 235

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 12/214 (5%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             +  I      + + +Y +++  +    +              +      +   D  L 
Sbjct: 24  TVMDNISEYFGVQRWGIYLLDTNNNLASVEAK-----GVSDTFIEQYQRFGKA-VDPVLK 77

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
           +      P   + +          +L  R          +  P+       G + F    
Sbjct: 78  YVLENHAPAH-EELVLPEGTWKQSELYQRCCSTHDHEHIMTGPLVGQGQLIGTINFARIG 136

Query: 139 --LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEE 193
                 +  +      C        EL K  S + +    LT RE     L   G T+ E
Sbjct: 137 HIPAFNHLELASLGAVCTHFSARLAELRKPHSVSGQISNRLTSREIQIANLVAKGLTNAE 196

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I  +L ++ ++V   L     KL+   R + +AK
Sbjct: 197 IGAELWITHNSVKQALKRIFRKLEVSARTEMVAK 230


>gi|312131668|ref|YP_003999008.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311908214|gb|ADQ18655.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 214

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           G   +V+  F E +   +     NLTE+E   L     G + + IA+ L +S+ TV  +L
Sbjct: 128 GIARRVLQLFREGYTPPTPKEDFNLTEQERKVLHYLVAGKSYKMIADVLFISLETVKTHL 187

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
            +  +KL   +  +A+AKA++   
Sbjct: 188 RNIYLKLQVHSGTEAVAKALKHKI 211


>gi|163736433|ref|ZP_02143852.1| transcriptional regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|163741032|ref|ZP_02148424.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161385385|gb|EDQ09762.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161390303|gb|EDQ14653.1| transcriptional regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 251

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 71/230 (30%), Gaps = 14/230 (6%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           + +L+EL           +       YT +         +    L N+  +         
Sbjct: 13  ARTLEELWLEHVEQMKAYRFDRLIYGYTRHKTKTSLGDPEDFVILSNHCAEYVQGFVNSG 72

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEE---TVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
             +    L    +      W+ +QE+     +    Q  +     +   AG         
Sbjct: 73  LYFDAPMLQWALNNEGAGSWRMVQEQLAQQTLTPQAQKVIDFNKAMGVRAGYTVSFYSAS 132

Query: 127 HKNGYVIFTSEFLMLANEVI--------IEAHGACYQVITDFLELFKKRSSAARNLTERE 178
            +    I  +    L+ + +         +            L +        R LT+R+
Sbjct: 133 QRFKGAISLAAEEDLSQDDVDEIWAKDGHDIILMNNVAHLKILTMPYD--PPNRGLTKRQ 190

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
              LQ  GDG T+++IA  +GL+  TV  +L  A   L       A+ KA
Sbjct: 191 REALQWVGDGKTTQDIALLMGLTPATVEKHLRLAREALAVETTAHAVLKA 240


>gi|162453707|ref|YP_001616074.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161164289|emb|CAN95594.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 242

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLA 185
             G  +        A+   + A     ++++ F+    +  R+     LT RE   L + 
Sbjct: 132 DAGPELLAQAIRAAASGDALIAPRVTARLLSSFVASRPQLPRAQPGEALTAREEEVLLIV 191

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             G T+ EIA++L +S+ TV A++ S   KL A NR++    A   G
Sbjct: 192 ARGRTNAEIADELHISLSTVKAHVASLMTKLGARNRVEIAIWAYETG 238


>gi|87118413|ref|ZP_01074312.1| putative two component system response regulator [Marinomonas sp.
           MED121]
 gi|86166047|gb|EAQ67313.1| putative two component system response regulator [Marinomonas sp.
           MED121]
          Length = 226

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
              +        +     LT RE   L+    G+ + EIA +L +   TV  ++ S   K
Sbjct: 138 AFAELKPSHTNVTGHIDRLTTREKEILKNLALGFNNSEIASRLFIGESTVKTHVSSLLSK 197

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L+  +R QA+  A   G I
Sbjct: 198 LELRDRAQAVIFAYENGVI 216


>gi|116625456|ref|YP_827612.1| LuxR family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228618|gb|ABJ87327.1| transcriptional regulator, LuxR family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 178

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L     + A  LT RE   L++  +G  ++ IA KLG+S HTV  ++     KL+A  R 
Sbjct: 105 LPASPQAVAGPLTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRT 164

Query: 223 QAIAKAIRFGYI 234
           +A+   IR G I
Sbjct: 165 EAVTLGIRKGLI 176


>gi|302548323|ref|ZP_07300665.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465941|gb|EFL29034.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 133 IFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +      + + E ++            ++T           +   LT+RE   + LA +G
Sbjct: 114 LLAGLRTVASGEALLSPAATRTLITNFLMTPAPGTHLAPPQSLSELTDREREVMGLAAEG 173

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ EIAE L LS  TV  ++  A  KL A +R Q +  A + G 
Sbjct: 174 KSNTEIAEILVLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218


>gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 231

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 22/197 (11%)

Query: 46  RRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS 105
           ++      + +  +   D    L +   D           P++         + + G  +
Sbjct: 46  QKNPPDLVISDIMMPEVDGYQFLKKLRDDPRYEAI-----PVV--------FLTARGMTT 92

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--------- 156
            R++G                     V    E     ++   +A                
Sbjct: 93  DRIQGYNAGCDAYLSKPFDPEELEAIVKNLLERRKATSQANTDASQLAEIAQDIREIKKK 152

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + D   L          LT RE S L L  +G  ++EIA +L  SV  V  Y+     K 
Sbjct: 153 LGDSESLATTPPPIKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKT 212

Query: 217 DAVNRIQAIAKAIRFGY 233
              +R + +  A++ G 
Sbjct: 213 GTNSRTELVRFALKHGL 229


>gi|114561805|ref|YP_749318.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114333098|gb|ABI70480.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 209

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157
              +    +    +   V         ++              ++++E        ++VI
Sbjct: 69  LNAMRQEGVTARIVILTVSDAKQDVVRLLRAGADGYLLKDTEPDLLLEQLKKAMLGHRVI 128

Query: 158 TDFLEL-------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +D +E            +S   NLT RE   LQ   +G ++  IAE L +S  TV  ++ 
Sbjct: 129 SDEVEAYLYELKNTIDDNSWIENLTPRELQILQELAEGKSNRMIAEDLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|302543726|ref|ZP_07296068.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461344|gb|EFL24437.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 2/109 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLA 185
                +  +   +LA  V         Q     L    +    +    LTERE   L L 
Sbjct: 114 GEAVRVVAAGEALLAPTVTKRLIATFSQAGWTALAGAARPGQQARLDELTERENEVLVLV 173

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ EIA+ L ++  TV  ++    VKL   +R QA   A     +
Sbjct: 174 AQGRSNAEIAQHLVVAESTVKTHVSRILVKLGLRDRTQAAVFAYEARLV 222


>gi|194434215|ref|ZP_03066482.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012]
 gi|194417544|gb|EDX33646.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012]
 gi|320178834|gb|EFW53797.1| Nitrate/nitrite response regulator protein [Shigella boydii ATCC
           9905]
 gi|332093180|gb|EGI98240.1| response regulator [Shigella boydii 5216-82]
 gi|332096195|gb|EGJ01198.1| response regulator [Shigella dysenteriae 155-74]
          Length = 215

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
              L    +    I   V         +I              EV++EA  A  +    F
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKAF 130

Query: 161 LE-----LFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            E     L ++    A       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|146308673|ref|YP_001189138.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
 gi|145576874|gb|ABP86406.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
          Length = 914

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                    + A     +   + +   +  S     L+ RE + LQL   G +++EI+E+
Sbjct: 819 RPACPQRDALLAQLPAAREADEDVAPEE--SGPTEKLSGREMAVLQLIARGCSNQEISER 876

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 877 LFISLHTVKTHARHINSKLGVERRTQAVARAKGLGLL 913


>gi|114765358|ref|ZP_01444475.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114542338|gb|EAU45367.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. HTCC2601]
          Length = 255

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 12/229 (5%)

Query: 11  SSSLQELSP-RLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNIL 68
           + S++EL    L  +                              L N+     D+    
Sbjct: 17  AGSVEELWAMHLESMA-GFGFDRLMYGFTRYRTSTSLGDPNDFVLLTNHSASYTDVFVGQ 75

Query: 69  IETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR-- 123
              +    +           W+    +  +  +  + +  +     +   AG +   R  
Sbjct: 76  GLYHHAPMVRWALEHEGACSWRVLGEMLAQGNLTEAERRVIAFNLSMDVRAGYSVSFRSL 135

Query: 124 -LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERET 179
                    +           + + +  G    ++ + L L           ++LT+R+ 
Sbjct: 136 STRAKGAIALTARPGMQQHEVDAVWDRFGEDIMLLNNLLHLKILTLPYIPPNQSLTKRQR 195

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             L+  GDG T ++IA  +GL+  T+  +L  A   L+     QA+AKA
Sbjct: 196 EALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKA 244


>gi|33151542|ref|NP_872895.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi
           35000HP]
 gi|33147762|gb|AAP95284.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi
           35000HP]
          Length = 213

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I   L   +  +     LT+RE   LQ    G ++++IA +L +S  TV  ++ +   KL
Sbjct: 132 IRAHLLNRRPENDPLSVLTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 192 NVHSRVAATIL 202


>gi|37522644|ref|NP_926021.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35213645|dbj|BAC91016.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 232

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ RE   LQL   G ++++IA+ L LSV+TV  ++     KL A NR QA+ KA+ 
Sbjct: 169 AVALSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKAMG 228

Query: 231 FG 232
            G
Sbjct: 229 TG 230


>gi|328883924|emb|CCA57163.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 222

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 5/136 (3%)

Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
             +         AG + F V+    +    G     S   ++A  +      A    +  
Sbjct: 84  FDLDEYAYDGLRAGASGFLVKDAQPEELLAGIRAVASGDAVVAPSLTRRLLDAYIHHLPQ 143

Query: 160 FLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                          LTERE   L + G G+T+ EIAE+L L+  TV  ++G    K  A
Sbjct: 144 SPTADPDPEDPRLATLTEREREILTVIGQGWTNTEIAERLHLAESTVKTHVGRILAKTGA 203

Query: 219 VNRIQAIAKAIRFGYI 234
            +R+QA+  A     +
Sbjct: 204 RDRVQAVILAYDTQLV 219


>gi|296877409|ref|ZP_06901446.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|296431570|gb|EFH17380.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
          Length = 199

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           +++   H           EL +   +    L+ +E + L+    G +++EIA++L LS  
Sbjct: 109 DLMATLHAVLAGQKEYSPELMEGILTHPNPLSPQEKAVLKEVAKGASNQEIADRLFLSNG 168

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 169 TIRNYMSAILTKLDAENRTEAAKIAQEKGWL 199


>gi|302526068|ref|ZP_07278410.1| two component system DNA binding response regulator [Streptomyces
           sp. AA4]
 gi|302434963|gb|EFL06779.1| two component system DNA binding response regulator [Streptomyces
           sp. AA4]
          Length = 205

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 46/109 (42%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V   A G           L  +  + A  L+ RE   L L 
Sbjct: 95  AGATGYLLKDAPPEDLAAAVRNAAAGQTVLAPAVAHRLMNRMRTPAAALSPREIEVLGLV 154

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++ EI+++L LS  TV ++L     KL   +R  A+A     G I
Sbjct: 155 ADGLSNLEISKRLFLSQATVKSHLVHIYAKLGVDSRTAAVAAGKARGLI 203


>gi|254285696|ref|ZP_04960659.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226]
 gi|150424193|gb|EDN16131.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226]
          Length = 208

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L   + 
Sbjct: 80  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 139

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 140 MSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199

Query: 227 KAIRF 231
             +  
Sbjct: 200 LYLER 204


>gi|163846970|ref|YP_001635014.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524791|ref|YP_002569262.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668259|gb|ABY34625.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448670|gb|ACM52936.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 218

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 42/110 (38%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V      +          ++  ++I +       +    +      S     LT RE   
Sbjct: 107 VDHRVLADSIRTVAGGGALIHPQIIAQLLPRLASLAPTPVTASSSPSDVTSILTPRERDI 166

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L+L   GYT++EI E+L LSV TV  +L     KL   +R QA   A   
Sbjct: 167 LRLLAQGYTNQEIGEQLALSVGTVKNHLSVIFAKLAVRDRTQAALWAREH 216


>gi|329935654|ref|ZP_08285461.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304915|gb|EGG48786.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAG 186
              +  +  ++ + + ++        +          R   A+ L   T+RET  L L  
Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFAKSRPGGRGGPAQRLKGLTQRETEVLTLVA 172

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EIAE L L+  TV  ++     KL   +R QA+  A   G +
Sbjct: 173 RGLSNSEIAETLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 220


>gi|292670350|ref|ZP_06603776.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541]
 gi|292648081|gb|EFF66053.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541]
          Length = 223

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 146 IIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           + E       V  D   + K+    S    LT RE   L     G+++++I + LGLS  
Sbjct: 130 LAERLFGSTAVYGDVSRMAKEIWDESRGERLTPREMDVLGCIAKGFSNQDIGKALGLSEK 189

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +L S   KL   +R QA+   ++   +
Sbjct: 190 TVKNHLTSIFHKLKVNDRTQALVYVLKNKIV 220


>gi|300779182|ref|ZP_07089040.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
 gi|300504692|gb|EFK35832.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
          Length = 212

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   LQL   G TS  IAE+L LS  TV+ +  +   K  A N  + I +A+
Sbjct: 146 PVARLTKREKQILQLVAQGKTSNMIAEELFLSPLTVDTHRKNLLQKFHAKNSTELINRAM 205

Query: 230 RFGYI 234
           + G I
Sbjct: 206 QQGMI 210


>gi|119025388|ref|YP_909233.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764972|dbj|BAF39151.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 226

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 164 DRLSNREQEVMRLIARGYTYKEVASELFISIKTVETHMSSVLRKLQLSNRSELTRWAADR 223

Query: 232 GYI 234
             +
Sbjct: 224 RIV 226


>gi|114320822|ref|YP_742505.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227216|gb|ABI57015.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 221

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT RE   L       +++ IA +LG+S  TV  ++ S   KL   +R++
Sbjct: 146 ASRPPDPFAALTPREREILMHVARAESNKVIARELGVSDGTVKLHIKSILRKLGVKSRVE 205

Query: 224 AIAKAIRFGY 233
           A  KA+  G 
Sbjct: 206 AAVKAVDLGL 215


>gi|329939256|ref|ZP_08288592.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301485|gb|EGG45379.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 238

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVII---------EAHGACYQVITDFLELFKKRSSAAR 172
           +R G          +E L  A   I                 + +    E     S+   
Sbjct: 111 LRAGAGGFVGKGIGAEELAEAVRTIAGGETLLSPAATRSLVARFLATPDESTPHDSARLA 170

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   + L   G +++EIAE++ LS  TV A++  A  KL+A +R Q +  A R G
Sbjct: 171 VLTPREREMVSLVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTG 230

Query: 233 YI 234
            +
Sbjct: 231 LV 232


>gi|126659693|ref|ZP_01730822.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp.
           CCY0110]
 gi|126619038|gb|EAZ89778.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp.
           CCY0110]
          Length = 90

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   + L   G T+ EIA+KL +S  TV+ ++ +   K    NR++ +  A+++G
Sbjct: 11  SLSGREMQIVDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQWG 70

Query: 233 YIC 235
            +C
Sbjct: 71  KVC 73


>gi|325697545|gb|EGD39431.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|328944949|gb|EGG39107.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 199

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|319791965|ref|YP_004153605.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594428|gb|ADU35494.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 237

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             + L +  S+ A  L+ RE   L+L   G+++ +IAE + LSV+T+  +  S   KL  
Sbjct: 162 RTVPLAEPPSAPA-RLSPRELKVLRLIAQGWSNRQIAEAVYLSVNTIEFHAKSIYRKLAV 220

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QA+ +A++ G +
Sbjct: 221 KSRTQAVHEAMQHGLL 236


>gi|241764600|ref|ZP_04762616.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241365963|gb|EER60589.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 263

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +++   A  L+ RE   L++   GYTS EI  +L +S  TVN ++ +   KL    R QA
Sbjct: 194 RRQPDDADRLSAREKEILRMVASGYTSTEIGSRLLISCMTVNTHIRNIYRKLQVRTRAQA 253

Query: 225 IAKAIRFGY 233
           +  A   G 
Sbjct: 254 VRFASLRGL 262


>gi|91223978|ref|ZP_01259241.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus
           12G01]
 gi|91190889|gb|EAS77155.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus
           12G01]
          Length = 210

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 11/138 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156
              L         +   V         ++ +            + ++E     +Q     
Sbjct: 68  LQALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHQGDKAY 127

Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              ++ +L    ++      LT+RE+  L+    G+ +++IA++L +S  TV  ++ S  
Sbjct: 128 SQEVSKYLSERSEQEDVFDTLTDRESQILREVARGFRNKQIADRLFISESTVKVHMKSLL 187

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   +R  A    +  
Sbjct: 188 KKLQVPSRTAATVLYLER 205


>gi|326624070|gb|EGE30415.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 198

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 54  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 113

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 114 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 173

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 174 NLLRKLNVRSRVAATIL 190


>gi|296314242|ref|ZP_06864183.1| nitrate/nitrite response regulator protein NarL [Neisseria
           polysaccharea ATCC 43768]
 gi|296839039|gb|EFH22977.1| nitrate/nitrite response regulator protein NarL [Neisseria
           polysaccharea ATCC 43768]
          Length = 218

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 + +         V +       + + A  +LT RE   L     G++++ IA  
Sbjct: 117 RKAADGDNVFSPEMTAKLVRSLISPQPAQGTQALSSLTPREMEILGYLAAGHSNKIIARH 176

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L L+  TV  ++ +   KL+  +R+QA   AI  
Sbjct: 177 LNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHH 210


>gi|289678344|ref|ZP_06499234.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
          Length = 213

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELF 164
                LL     + P   G     +     E     +E ++          ++       
Sbjct: 83  DEARALLLR---SLPAASGGALIPFKALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACC 139

Query: 165 KKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 A     L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R
Sbjct: 140 TPSPEPAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERR 199

Query: 222 IQAIAKAIRFGYI 234
            QA+A+A   G +
Sbjct: 200 TQAVARAKTLGLL 212


>gi|229526813|ref|ZP_04416217.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv.
           albensis VL426]
 gi|229336971|gb|EEO01989.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv.
           albensis VL426]
          Length = 207

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L   + 
Sbjct: 80  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREH 139

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 140 TSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199

Query: 227 KAIRF 231
             +  
Sbjct: 200 LYLER 204


>gi|2564978|gb|AAB82054.1| hypothetical protein [Rhodobacter capsulatus]
          Length = 250

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 10/211 (4%)

Query: 28  IKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86
                    +T  SA            L N+D    +             +      +  
Sbjct: 28  FGFDRLIYGFTRFSATQNLGSLDDTLILSNHDPAYLNSFLGAGLFSEAPMVKWAIDSVGA 87

Query: 87  IIWQSIQEETVIES---SGQLSVRLEGGLLPFAGIAFPVRL---GFHKNGYVIFTSEFLM 140
             W+ + E           +  + L       AG +               +        
Sbjct: 88  CSWRMVAERMAAGELTEGERKVIELNRRFQVLAGYSIGFPDTSARAKGAIGLCAQPGLTQ 147

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEK 197
              + I + HG   +V+   + L           R LT R+   L+  GDG TS +IA+ 
Sbjct: 148 ADVDAIWDEHGRDLRVLNSIMHLKISALPFSTTRRPLTARQREVLEWVGDGKTSADIAQI 207

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LGL+  TV  +L  A   L+     QA+ KA
Sbjct: 208 LGLTTATVEKHLRLAREALEVETTAQALLKA 238


>gi|41406787|ref|NP_959623.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254773764|ref|ZP_05215280.1| NarL_1 [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41395137|gb|AAS03006.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 217

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    L    +                    G+V+  S  
Sbjct: 57  DVALLDYRMPGMDGAQVAAAVRADGLATRVLLISAHDESAIVYQALQQGAAGFVLKDSTR 116

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++       L+ RE   L     G +   I
Sbjct: 117 SEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPTGPVLSAREREVLHRIARGQSIPAI 176

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL   +R  A+A+A+R G +
Sbjct: 177 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 216


>gi|15806567|ref|NP_295281.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6459320|gb|AAF11120.1|AE001999_4 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 225

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 140 MLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
             +++ + +A  A  +            L    +      +LT +ET+ LQL   G +++
Sbjct: 117 DASSDTLADAIHAAARGEVRLHPEAARRLVRDFRSPEMRESLTPKETAVLQLLARGQSNK 176

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +IA + G+S  TV  ++     KL   +R QA   A+++G 
Sbjct: 177 DIAAEQGVSEATVKTHVSRLLSKLGLDSRTQAALYALKYGI 217


>gi|74312714|ref|YP_311133.1| transcriptional regulator NarP [Shigella sonnei Ss046]
 gi|82776204|ref|YP_402553.1| transcriptional regulator NarP [Shigella dysenteriae Sd197]
 gi|157156289|ref|YP_001463544.1| transcriptional regulator NarP [Escherichia coli E24377A]
 gi|157161674|ref|YP_001458992.1| transcriptional regulator NarP [Escherichia coli HS]
 gi|170019493|ref|YP_001724447.1| transcriptional regulator NarP [Escherichia coli ATCC 8739]
 gi|170679777|ref|YP_001744386.1| transcriptional regulator NarP [Escherichia coli SMS-3-5]
 gi|187730582|ref|YP_001879462.1| transcriptional regulator NarP [Shigella boydii CDC 3083-94]
 gi|188495436|ref|ZP_03002706.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638]
 gi|191165388|ref|ZP_03027230.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A]
 gi|193062271|ref|ZP_03043366.1| nitrate/nitrite response regulator NarP [Escherichia coli E22]
 gi|194427123|ref|ZP_03059674.1| nitrate/nitrite response regulator NarP [Escherichia coli B171]
 gi|194436209|ref|ZP_03068311.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1]
 gi|209919652|ref|YP_002293736.1| transcriptional regulator NarP [Escherichia coli SE11]
 gi|218554761|ref|YP_002387674.1| transcriptional regulator NarP [Escherichia coli IAI1]
 gi|218695805|ref|YP_002403472.1| transcriptional regulator NarP [Escherichia coli 55989]
 gi|218700662|ref|YP_002408291.1| transcriptional regulator NarP [Escherichia coli IAI39]
 gi|218705722|ref|YP_002413241.1| transcriptional regulator NarP [Escherichia coli UMN026]
 gi|253772883|ref|YP_003035714.1| transcriptional regulator NarP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162205|ref|YP_003045313.1| transcriptional regulator NarP [Escherichia coli B str. REL606]
 gi|256017639|ref|ZP_05431504.1| transcriptional regulator NarP [Shigella sp. D9]
 gi|256022125|ref|ZP_05435990.1| transcriptional regulator NarP [Escherichia sp. 4_1_40B]
 gi|260844795|ref|YP_003222573.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O103:H2 str.
           12009]
 gi|260856180|ref|YP_003230071.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O26:H11 str.
           11368]
 gi|260868909|ref|YP_003235311.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O111:H- str.
           11128]
 gi|297520422|ref|ZP_06938808.1| transcriptional regulator NarP [Escherichia coli OP50]
 gi|301024278|ref|ZP_07187969.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 196-1]
 gi|307138849|ref|ZP_07498205.1| transcriptional regulator NarP [Escherichia coli H736]
 gi|307311230|ref|ZP_07590874.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|309786632|ref|ZP_07681253.1| response regulator [Shigella dysenteriae 1617]
 gi|312973555|ref|ZP_07787727.1| response regulator [Escherichia coli 1827-70]
 gi|331663697|ref|ZP_08364607.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA143]
 gi|331668898|ref|ZP_08369746.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA271]
 gi|331683869|ref|ZP_08384465.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H299]
 gi|73856191|gb|AAZ88898.1| nitrate/nitrite response regulator [Shigella sonnei Ss046]
 gi|81240352|gb|ABB61062.1| nitrate/nitrite response regulator [Shigella dysenteriae Sd197]
 gi|157067354|gb|ABV06609.1| nitrate/nitrite response regulator NarP [Escherichia coli HS]
 gi|157078319|gb|ABV18027.1| nitrate/nitrite response regulator NarP [Escherichia coli E24377A]
 gi|169754421|gb|ACA77120.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|170517495|gb|ACB15673.1| nitrate/nitrite response regulator NarP [Escherichia coli SMS-3-5]
 gi|187427574|gb|ACD06848.1| nitrate/nitrite response regulator NarP [Shigella boydii CDC
           3083-94]
 gi|188490635|gb|EDU65738.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638]
 gi|190904551|gb|EDV64258.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A]
 gi|192931937|gb|EDV84536.1| nitrate/nitrite response regulator NarP [Escherichia coli E22]
 gi|194414744|gb|EDX31015.1| nitrate/nitrite response regulator NarP [Escherichia coli B171]
 gi|194424937|gb|EDX40922.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1]
 gi|209912911|dbj|BAG77985.1| nitrate/nitrite response regulator [Escherichia coli SE11]
 gi|218352537|emb|CAU98316.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli 55989]
 gi|218361529|emb|CAQ99120.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli IAI1]
 gi|218370648|emb|CAR18457.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli IAI39]
 gi|218432819|emb|CAR13713.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli UMN026]
 gi|242377829|emb|CAQ32596.1| narP [Escherichia coli BL21(DE3)]
 gi|253323927|gb|ACT28529.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974106|gb|ACT39777.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli B str. REL606]
 gi|253978273|gb|ACT43943.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BL21(DE3)]
 gi|257754829|dbj|BAI26331.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O26:H11 str.
           11368]
 gi|257759942|dbj|BAI31439.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O103:H2 str.
           12009]
 gi|257765265|dbj|BAI36760.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O111:H- str.
           11128]
 gi|284922185|emb|CBG35267.1| nitrate/nitrite response regulator protein [Escherichia coli 042]
 gi|299880482|gb|EFI88693.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 196-1]
 gi|306908736|gb|EFN39233.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|308925541|gb|EFP71027.1| response regulator [Shigella dysenteriae 1617]
 gi|309702505|emb|CBJ01831.1| nitrate/nitrite response regulator protein [Escherichia coli ETEC
           H10407]
 gi|310332150|gb|EFP99385.1| response regulator [Escherichia coli 1827-70]
 gi|315061500|gb|ADT75827.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli W]
 gi|315615453|gb|EFU96085.1| response regulator [Escherichia coli 3431]
 gi|320177206|gb|EFW52214.1| Nitrate/nitrite response regulator protein [Shigella dysenteriae
           CDC 74-1112]
 gi|320199790|gb|EFW74379.1| Nitrate/nitrite response regulator protein [Escherichia coli
           EC4100B]
 gi|323152251|gb|EFZ38541.1| response regulator [Escherichia coli EPECa14]
 gi|323161744|gb|EFZ47626.1| response regulator [Escherichia coli E128010]
 gi|323168652|gb|EFZ54332.1| response regulator [Shigella sonnei 53G]
 gi|323171865|gb|EFZ57509.1| response regulator [Escherichia coli LT-68]
 gi|323184184|gb|EFZ69561.1| response regulator [Escherichia coli 1357]
 gi|323377920|gb|ADX50188.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|323936807|gb|EGB33092.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940739|gb|EGB36927.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323945009|gb|EGB41074.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323961585|gb|EGB57192.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323972986|gb|EGB68182.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323977610|gb|EGB72696.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324117918|gb|EGC11817.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331059496|gb|EGI31473.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA143]
 gi|331064092|gb|EGI36003.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA271]
 gi|331078821|gb|EGI50023.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H299]
 gi|332343973|gb|AEE57307.1| response regulator protein [Escherichia coli UMNK88]
          Length = 215

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|326331408|ref|ZP_08197698.1| two component transcriptional regulator, LuxR family
           [Nocardioidaceae bacterium Broad-1]
 gi|325950664|gb|EGD42714.1| two component transcriptional regulator, LuxR family
           [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 33/72 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                      +LTERE   +     G ++ EIA +L +S  TV  ++  A VKL A +R
Sbjct: 149 RRAANPHPRLGDLTEREREMVAWVATGRSNAEIAAELVVSPDTVRTHVSRAMVKLHARDR 208

Query: 222 IQAIAKAIRFGY 233
            Q +  AI  G 
Sbjct: 209 AQLVVFAIESGL 220


>gi|297154023|gb|ADI03735.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 226

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---- 173
           +A  +R G          +E L+ A   I +         T  L      +         
Sbjct: 89  VAQALRAGAGGFIGKGIGAEDLLDAVRTIADGDTLLSPAATRSLVARFLATPDDTPSHHP 148

Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   + L   G +++EIAE++ LS  TV A++  A  KL+A +R Q +  A
Sbjct: 149 EQLAVLTPREREMVALVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIA 208

Query: 229 IRFGY 233
            R G 
Sbjct: 209 YRTGL 213


>gi|296454799|ref|YP_003661943.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184231|gb|ADH01113.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 185

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 123 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 182

Query: 232 GYI 234
             +
Sbjct: 183 RIV 185


>gi|296138380|ref|YP_003645623.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026514|gb|ADG77284.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 212

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +  +   + A  +++ A  A +            R      LTERE      A +G ++
Sbjct: 110 FVLAAIRDVAAGNMVVAASAARHLFAHPRPSTAPHRPVEFGRLTEREQQIFVRAAEGLSN 169

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIAEK  L+  TV  ++     KL   +R+Q +  A R G +
Sbjct: 170 AEIAEKEFLAETTVKTHVSRVLTKLGLRDRVQLVVYAHRHGLV 212


>gi|264679733|ref|YP_003279642.1| LuxR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210248|gb|ACY34346.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni CNB-2]
          Length = 274

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LTERE   L+L   G +S E+A  L +S  TV+ ++ +   K+    R QA+  AI  
Sbjct: 212 ESLTEREVEILKLIAQGKSSLEVASYLQISPLTVSTHIKNIYGKMQVRTRAQAVRCAILI 271

Query: 232 GYI 234
           G I
Sbjct: 272 GII 274


>gi|116073608|ref|ZP_01470870.1| possible DNA-binding response regulator [Synechococcus sp. RS9916]
 gi|116068913|gb|EAU74665.1| possible DNA-binding response regulator [Synechococcus sp. RS9916]
          Length = 244

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE--AHGACYQV-----ITDFLELFKK 166
               I   +  G         +    +LA    ++   H               L    +
Sbjct: 106 LVRIILQAIDAGCDGICAAELSGSGSVLAALDAMDSDGHYIDRIASGVLSHGQLLGSGGQ 165

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +S     L+ RE   L+    G T+++IA+   +S  TV +++ S   KL   +R QA+ 
Sbjct: 166 QSPLLAPLSLREEDVLRGLCKGMTNQQIADAFTVSTETVKSHVSSVLRKLAVTDRTQAVV 225

Query: 227 KAIRFGYI 234
           KA R G +
Sbjct: 226 KAFREGLV 233


>gi|86606978|ref|YP_475741.1| LuxR family transcriptional regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555520|gb|ABD00478.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-3-3Ab]
          Length = 87

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ERE   L+L   G T+++IAE+L +S  TV+ ++ +   K    NR+  +  A++
Sbjct: 8   ADLLSERELQVLELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTSNRVALVRWALQ 67

Query: 231 FGYIC 235
           +G +C
Sbjct: 68  WGKVC 72


>gi|330821298|ref|YP_004350160.1| PAS/PAC domain protein [Burkholderia gladioli BSR3]
 gi|327373293|gb|AEA64648.1| PAS/PAC domain protein [Burkholderia gladioli BSR3]
          Length = 541

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 16/159 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLL-----PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
           +       +      R+            +     +         ++  SE      E+I
Sbjct: 342 VDAIGREGAVRMRDARVLRHDGEPRDCLVSADMVAIHGQDCLLLALLDISERKRTEMELI 401

Query: 147 I-------EAHGACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIA 195
                   +A      +I     + + ++  A     +LT RE     L   G   +EIA
Sbjct: 402 QAIETAMQDASWFSRTLIEKLANVRRDKAPDAGAQLADLTARERDVFDLLCHGLPDKEIA 461

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +LGL+ +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 462 NRLGLAPNTVRNHVSTIYNKLDVHSRGEAIVWARERGIV 500


>gi|311899662|dbj|BAJ32070.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 228

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L G G ++ EIA  L L   TV  ++     KL   NR+ A+  A   
Sbjct: 155 DRLTPREHQVLRLLGRGRSNPEIAAALYLGEATVKTHVRRVLDKLGVRNRVHAVVFAFDH 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|303239313|ref|ZP_07325841.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593099|gb|EFL62819.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 210

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H      + + L   +  ++    LT RE    +L  +  +++EIA KL ++  TV  +
Sbjct: 126 LHNNIAAKLVNRLSESQDSANQLEELTSREHEIAKLVAEALSNKEIAAKLFITEGTVKNH 185

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   KLD  +R +     I    
Sbjct: 186 ITNILSKLDLNHRTKIALYVIENNL 210


>gi|301057012|gb|ADK54837.1| two component regulator [uncultured soil bacterium]
          Length = 223

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQ 183
                       ++A    + A     ++I +F  +     +  +     LTERET  L 
Sbjct: 108 DASAAELAQAVRVVAAGDALLAPNITKRLIAEFSRVTVAPRAPVKGRIGELTERETEVLS 167

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA +L ++  T   ++    +KL   +R QA   A   G +
Sbjct: 168 LIAQGLSNAEIATRLVVAEQTTKTHVSRILIKLGLRDRTQAAVFAYETGLV 218


>gi|153011325|ref|YP_001372539.1| response regulator receiver protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151563213|gb|ABS16710.1| response regulator receiver protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 263

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 18/235 (7%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNF----ALYTINSALD-------FPRRQQLICELHN 56
            ++  S  E       +       +F      +  N               +  +    N
Sbjct: 2   PRQILSTDERISAALSVAESRNYDDFTIACDYFAANVLRVRSLGIYLLENNRPRLFHSIN 61

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
                            D  +         I    + +         L   L        
Sbjct: 62  TPTGFLLEY-QNGLADSDPMIAAVVQNAGAIAGSRLPQNAAGNVP--LMRTLLYRWNYND 118

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAAR-- 172
            +  PV +G +    +      +      E +     +    + +  E    ++  A   
Sbjct: 119 NLCCPVYVGDNIQALIYAAGFEMHATQLEEQVSLLCRSSALALRNIQEARPAKTPNANLT 178

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +L+ R ++  +L   G T+++IA  L LS HTV  Y+     +    NR +    
Sbjct: 179 SLSPRLSTVARLLAAGNTNKQIARHLELSPHTVKDYVDDLIKRFGVRNRTEVAVL 233


>gi|302530267|ref|ZP_07282609.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439162|gb|EFL10978.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 217

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           +++  +L   +          LTERE   L L   G ++ EIA  L +   TV  ++G  
Sbjct: 132 RLLDRYLSAHRTPLDEQKLETLTEREKDVLGLIARGLSNTEIAGTLFIGETTVKTHVGRL 191

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R+ A+  A   G +
Sbjct: 192 LNKLGLRDRVHAVVFAYESGLV 213


>gi|197285412|ref|YP_002151284.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320]
 gi|194682899|emb|CAR43257.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320]
          Length = 207

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
            +  +   SG   +R        + +    +    +     +       L  E  ++   
Sbjct: 55  MDLHLQGRSGIDIIRSLRRCGLTSYVLVLSISDSRNDVYAALDAGANGYLLKECELDMLL 114

Query: 152 ACYQV-----------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
              +            +  +++L +  S     LT+RE   LQ    G  +++IAE L +
Sbjct: 115 LSLRKAVVGRPVYSEKVWQYIQLRQNYSDPLSALTKRELDVLQEVAVGMKNKQIAENLFI 174

Query: 201 SVHTVNAYLGSATVKLDAVNRIQA 224
           S  TV  ++ +   KL   +R+ A
Sbjct: 175 SEETVKVHIRNILKKLQVTSRLAA 198


>gi|21224729|ref|NP_630508.1| two-component system regulatory protein [Streptomyces coelicolor
           A3(2)]
 gi|256784115|ref|ZP_05522546.1| two-component system regulatory protein [Streptomyces lividans
           TK24]
 gi|289767994|ref|ZP_06527372.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|21902164|gb|AAM78436.1|AF425994_2 putative two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3127843|emb|CAA18909.1| putative two-component system regulatory protein [Streptomyces
           coelicolor A3(2)]
 gi|289698193|gb|EFD65622.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                +  +     LT RE     LA  G ++EEIA  + +S  T   ++  A  KL A 
Sbjct: 144 ARPPDRSTAPGLDALTRREREVTALAARGLSNEEIAAHMVISPLTAKTHISRAMTKLGAR 203

Query: 220 NRIQAIAKAIRFGYI 234
           +R Q +  A   G +
Sbjct: 204 DRAQLVVFAYESGLV 218


>gi|238893551|ref|YP_002918285.1| putative regulatory protein [Klebsiella pneumoniae NTUH-K2044]
 gi|329998395|ref|ZP_08303094.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
 gi|1709068|sp|P54794|MOAR_KLEAE RecName: Full=Monoamine regulon transcriptional regulator
 gi|625762|pir||A36937 monoamine regulon positive regulator MoaR - Klebsiella pneumoniae
 gi|506343|dbj|BAA03667.1| regulator protein [Klebsiella aerogenes]
 gi|58036473|dbj|BAD88601.1| transcriptional factor [Klebsiella aerogenes]
 gi|238545867|dbj|BAH62218.1| putative bacterial regulatory protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328538695|gb|EGF64787.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
          Length = 227

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 12/220 (5%)

Query: 10  KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           K+S    +  R L  I   I   +   Y +N+ L     +     LHN   ++       
Sbjct: 6   KASRNDAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPENYILHNISDNTHQQYLE- 59

Query: 69  IETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                D  L  HF+     +   +     + + +                    +R    
Sbjct: 60  NFQPLDPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERR 116

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               +      +  ++E    A      V     +  ++       LT +E   + +  +
Sbjct: 117 IVAGISLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEEDDLPAILTAKEREIVGMVRE 175

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G +++ IA +L +S+ TV  +L +   K + VNR + +++
Sbjct: 176 GASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215


>gi|333002916|gb|EGK22472.1| response regulator [Shigella flexneri K-272]
 gi|333016922|gb|EGK36246.1| response regulator [Shigella flexneri K-227]
          Length = 215

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRTGAKGSKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            + +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|332366199|gb|EGJ43954.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 199

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 43/73 (58%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A DG +++EIAEKL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAADGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQDKGWL 199


>gi|332875471|ref|ZP_08443293.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6014059]
 gi|323518111|gb|ADX92492.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736330|gb|EGJ67335.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6014059]
          Length = 240

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 10/211 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              L  I   ++A   A Y  +S  +   R+ +I ++        D   +    + D   
Sbjct: 36  ESILADIAILLRADFAASYIWDSTHNLS-REGVIWKID--PKAMKDYECVW--QFNDPIT 90

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTS 136
                   P     +     ++               + GI    VR G       I+ +
Sbjct: 91  AQLRKRQKPTFVNEVMPLADLK-KTPYYNEFLRAYGLYHGINIYFVRNGMDIGDLRIWRA 149

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +      E             T  L L     S    LT RE   ++L   G + +++A 
Sbjct: 150 KDADTFGEREKRILNLLEPYFTQALPLD---LSTQYGLTSREQEVVRLVSKGLSDKDVAN 206

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L +S  T+  +L ++  K+   N  +    
Sbjct: 207 LLDISFTTLRTHLNNSMRKIGCNNLTEMALL 237


>gi|261378734|ref|ZP_05983307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea
           ATCC 14685]
 gi|269144889|gb|EEZ71307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea
           ATCC 14685]
          Length = 218

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 + +         V +       + +    +LT RE   L     G++++ IA  
Sbjct: 117 RKAADGDNVFSPEMTAKLVRSLISPQPAQGTQTLSSLTPREMEILGYLAAGHSNKIIARH 176

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L L+  TV  ++ +   KL+  +R+QA   AI  
Sbjct: 177 LNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHH 210


>gi|184158171|ref|YP_001846510.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
 gi|183209765|gb|ACC57163.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
          Length = 239

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 10/211 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              L  I   ++A   A Y  +S  +   R+ +I ++        D   +    + D   
Sbjct: 35  ESILADIAILLRADFAASYIWDSTHNLS-REGVIWKID--PKAMKDYECVW--QFNDPIT 89

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTS 136
                   P     +     ++               + GI    VR G       I+ +
Sbjct: 90  AQLRKRQKPTFVNEVMPLADLK-KTPYYNEFLRAYGLYHGINIYFVRNGMDIGDLRIWRA 148

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +      E             T  L L     S    LT RE   ++L   G + +++A 
Sbjct: 149 KDADTFGEREKRILNLLEPYFTQALPLD---LSTQYGLTSREQEVVRLVSKGLSDKDVAN 205

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L +S  T+  +L ++  K+   N  +    
Sbjct: 206 LLDISFTTLRTHLNNSMRKIGCNNLTEMALL 236


>gi|172039633|ref|YP_001806134.1| LuxR family transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171701087|gb|ACB54068.1| transcriptional Regulator, LuxR family [Cyanothece sp. ATCC 51142]
          Length = 90

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   L L   G T+ EIA+KL +S  TV+ ++ +   K    NR++ +  A+++G
Sbjct: 11  SLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQWG 70

Query: 233 YIC 235
            +C
Sbjct: 71  KVC 73


>gi|332359210|gb|EGJ37031.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332359828|gb|EGJ37642.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 199

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|159184353|ref|NP_353554.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139669|gb|AAK86339.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 226

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L L+     A ++ L   +                ++  D      I +    +      
Sbjct: 27  LDLLVTYAGASHYLLARDDL---LEETGLKFIVTSDWPFDLVRRLGIELTNSQN------ 77

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
                     S+ +  ++     +SV   G    ++ ++F V  G  +   ++   E  +
Sbjct: 78  -RSSEMEKCLSLLQPRLLLLPDDVSVPY-GIDRQYSALSFCV--GRIRLSLLLLFPEEAV 133

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            + E + E        ++  +    K       LTERE  CL    +G TS+EIA  LG+
Sbjct: 134 PSPERLREIALLTGYCVSFGIASEAKTVRDID-LTERELECLFWIAEGKTSDEIAMILGI 192

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 193 SRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 226


>gi|83643206|ref|YP_431641.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631249|gb|ABC27216.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 207

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLA 185
              GYV  +S   ++A+ + +   G  Y           +        LT R+   L L 
Sbjct: 99  GALGYVPKSSSNAVIASAIQLMLSGGVYIPHELLRTGHDEGMPTGDICLTPRQHEVLGLL 158

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G ++++I  KL ++  T+ A++ +   +L+A NR QA+ +A     +
Sbjct: 159 AEGMSNKQIGTKLSIAPGTIKAHIAAIFRELNAANRTQAVHRARELKLL 207


>gi|23466193|ref|NP_696796.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23326934|gb|AAN25432.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 231

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228

Query: 232 GYI 234
             +
Sbjct: 229 RIV 231


>gi|171316398|ref|ZP_02905617.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098431|gb|EDT43234.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 515

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200
            + +A      +I     + +  +  A      LT RE     L   G   +EIA +LGL
Sbjct: 398 AMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGL 457

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 458 APNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|301385893|ref|ZP_07234311.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061837|ref|ZP_07253378.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302130857|ref|ZP_07256847.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 149

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 13/155 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
           ++W     +        L            G            G V  +     +  + +
Sbjct: 1   MLWSEDTFKD-----HTLLYGEMKKFNLNYGWLQSSWYNSAAKGVVTLSRSTEAITLKEL 55

Query: 147 IE-------AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                         +  +++ + L    +     L+ RE   L+   DG T E I + LG
Sbjct: 56  DAKEAKMSKLVRLTHACLSEIITLSPPYNP-LEKLSTREVEVLKWVADGKTGEVIGKVLG 114

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  TV  +  +   KL+A N+  A  KA   G I
Sbjct: 115 VTERTVTHHTVNIMQKLNATNKTAAAVKAALLGII 149


>gi|282860391|ref|ZP_06269457.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564127|gb|EFB69663.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 5/136 (3%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-- 161
             +         AG +  +         +            V               L  
Sbjct: 84  FDLDEYAHDGLRAGASGFLVKDAMPEELLSGIRAVASGDAVVAPSLTRRLLDAYAHHLPS 143

Query: 162 ---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                 ++ +    +LTERE   L + G G+T+ EIA +L L+  TV  ++     K  +
Sbjct: 144 TPGARPERENPRIASLTEREREILTVIGQGWTNTEIATRLHLAESTVKTHVTRILAKTGS 203

Query: 219 VNRIQAIAKAIRFGYI 234
            +R+QA+  A     +
Sbjct: 204 RDRVQAVILAYDTRLV 219


>gi|213027459|ref|ZP_03341906.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 157

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 40/157 (25%), Gaps = 10/157 (6%)

Query: 33  FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92
           F  Y +      P  +  I     Y                D  L   N     + W  +
Sbjct: 5   FDYYALCVRHPVPFTRPKISLRTTYPQAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDV 64

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN----EVIIE 148
                     Q             G+   V L     G++ F+   L  ++    EV + 
Sbjct: 65  LFH-----EAQAMWDAAQRFGLRRGVTQCVMLPNRALGFLSFSRSSLRCSSFTYDEVELR 119

Query: 149 AHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
                 + ++    L      +     ++RE   L+ 
Sbjct: 120 LQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKW 156


>gi|307154613|ref|YP_003889997.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984841|gb|ADN16722.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 211

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 11/151 (7%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVIIE 148
                I         +         I F    G       + +      F       +++
Sbjct: 61  DLRMPIMEGADAIAAIRAKFKQARIIVFSTYDGDENIYRGLRSGAKGYIFKGAEPHELLK 120

Query: 149 AHGACYQVI-----TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           A    ++           +L ++  S+   L+ RE   L+L   G ++ EI++ L ++  
Sbjct: 121 AIRTVHKGQKYIPPNIAAKLAERLGSS--PLSNRELEVLRLIAKGKSNSEISQDLSIAES 178

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +L +   KLD  +R QA+  A+  G +
Sbjct: 179 TVRFHLKNIFSKLDVGDRTQALVTALNRGIV 209


>gi|158337844|ref|YP_001519020.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308085|gb|ABW29702.1| transcriptional regulator, LuxR family [Acaryochloris marina
           MBIC11017]
          Length = 233

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 10/176 (5%)

Query: 54  LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113
           L   +     + +  +    +  + +      P+    +          ++         
Sbjct: 45  LSVLEPRLQKVMDRALSLDHNPVVRYITERHAPVHESLVT----SPKVWRMICPRLDHWH 100

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEF--LMLANEVIIEAHGACYQVITDFLELFKKRSSA- 170
             AG   P+       G V  T E       ++ + +    C  + T    +  + ++  
Sbjct: 101 VMAG---PLVNQGQLVGAVGLTREQAKPAFDSQDLADLSAICLHLSTWVAAVKHQENAQK 157

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
              LT RE    +L   G T+  I  +L ++ ++V   L     KL+  +R + +A
Sbjct: 158 QDCLTPRELEIAELVASGLTNAAIGRELWITENSVKQALKRMFRKLEVSSRAELVA 213


>gi|262403032|ref|ZP_06079592.1| transcriptional regulator VpsT [Vibrio sp. RC586]
 gi|262350531|gb|EEY99664.1| transcriptional regulator VpsT [Vibrio sp. RC586]
          Length = 224

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            + +  A     + I  +       +S     LT+RE   ++L G G ++ EIA+KL +S
Sbjct: 127 QDEMWLARKLAQEYILHYRSGNSVVTSQMYAKLTKREQQIIKLLGSGSSNIEIADKLFVS 186

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +TV  +L +   K++A NR+QA+  A
Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|163800334|ref|ZP_02194235.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4]
 gi|159175777|gb|EDP60571.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4]
          Length = 210

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QV 156
           L         +   V         ++ +            + ++      +       Q 
Sbjct: 71  LRTDGCDARIVILTVSDSPADITAIVRSGADGYLLKDTEPDELVGLLKQAHKGDKAYSQA 130

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I ++L   K + +    LT+RET  L+    GY ++EIAE L +S  TV  ++ S   KL
Sbjct: 131 IAEYLIANKGQENVFDTLTDRETQILKEVSRGYRNKEIAEHLFISESTVKVHMKSLLKKL 190

Query: 217 DAVNRIQAIAKAIRF 231
              +R  A    +  
Sbjct: 191 KMPSRTAATVLYLER 205


>gi|154688084|ref|YP_001423245.1| YocG [Bacillus amyloliquefaciens FZB42]
 gi|154353935|gb|ABS76014.1| YocG [Bacillus amyloliquefaciens FZB42]
          Length = 199

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S    LTERE   L+L  DG  ++EIA  L +   TV  Y+     KL+  NR
Sbjct: 126 ELMEDIYSEENPLTEREKEVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITRSKEKGW 197


>gi|332665795|ref|YP_004448583.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334609|gb|AEE51710.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 209

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                 +  ++    LT+RE   LQL     ++++IA +L +S  TV+ +  +   KL  
Sbjct: 134 ARAHSDEGSNTGEPLLTKREVQILQLISKAMSNKQIASQLFISYQTVSVHRKNIMRKLGV 193

Query: 219 VNRIQAIAKAIRFGYI 234
            N    +  A     +
Sbjct: 194 SNTAGLVRAAYDHCLV 209


>gi|295837969|ref|ZP_06824902.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295826775|gb|EFG65041.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 224

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAG 186
               +      +LA  V         +V    L      +   A   LTERET  L    
Sbjct: 114 EAVEVVARGEALLAPSVTRRLITEFARVPETVLRGPAPPRTGGAYGELTERETEVLVHVA 173

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G +++EIA KL ++  TV  ++    VKL   +R QA   A     +
Sbjct: 174 CGLSNQEIAAKLYVAESTVKTHVSRILVKLGLRDRTQAAVFAYENRLV 221


>gi|260596309|ref|YP_003208880.1| putative HTH-type transcriptional regulator yhjB [Cronobacter
           turicensis z3032]
 gi|260215486|emb|CBA27616.1| Putative HTH-type transcriptional regulator yhjB [Cronobacter
           turicensis z3032]
          Length = 218

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 1/128 (0%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
           +    ++ +   +         + L  H   +V   S    +   +   A G        
Sbjct: 87  AQRHPALPVVLLVNQCQPALLRLFLRHHVAAFVRRDSPPEAIVQTLRAAAMGMLCFPQES 146

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              L          L+ER+   L+L   G ++++I+  L +S  TV A+L S   +L+  
Sbjct: 147 ISLLDSG-PGTLARLSERQREILKLLAAGESNKQISRHLNISAGTVKAHLESIFRRLNVT 205

Query: 220 NRIQAIAK 227
           NR QA   
Sbjct: 206 NRTQAAML 213


>gi|225155028|ref|ZP_03723524.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224804198|gb|EEG22425.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 217

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 153 CYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +   +       + A   +LT+RE   LQL  + YT+++IA KL +S  TV+ +  
Sbjct: 128 AIAAMLRMVVANSGSRAPAGVDSLTDREREILQLVAESYTTKDIATKLDISAKTVDNHRT 187

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL+  +       A+  G I
Sbjct: 188 NLMRKLNLHDVASLTRYAVEIGLI 211


>gi|30063633|ref|NP_837804.1| transcriptional regulator NarP [Shigella flexneri 2a str. 2457T]
 gi|56480063|ref|NP_708089.2| transcriptional regulator NarP [Shigella flexneri 2a str. 301]
 gi|110806169|ref|YP_689689.1| transcriptional regulator NarP [Shigella flexneri 5 str. 8401]
 gi|30041886|gb|AAP17613.1| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri
           2a str. 2457T]
 gi|56383614|gb|AAN43796.2| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri
           2a str. 301]
 gi|110615717|gb|ABF04384.1| nitrate/nitrite response regulator [Shigella flexneri 5 str. 8401]
 gi|281601644|gb|ADA74628.1| Nitrate/nitrite response regulator [Shigella flexneri 2002017]
 gi|313651305|gb|EFS15703.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|332754834|gb|EGJ85199.1| response regulator [Shigella flexneri 4343-70]
 gi|332755237|gb|EGJ85601.1| response regulator [Shigella flexneri K-671]
 gi|332756240|gb|EGJ86591.1| response regulator [Shigella flexneri 2747-71]
 gi|332766006|gb|EGJ96216.1| response regulator [Shigella flexneri 2930-71]
 gi|333001907|gb|EGK21473.1| response regulator [Shigella flexneri K-218]
 gi|333016648|gb|EGK35977.1| response regulator [Shigella flexneri K-304]
          Length = 215

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRTGAKGSKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            + +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|33860714|ref|NP_892275.1| LuxR family regulatory protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633656|emb|CAE18613.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 92

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   + L  DG T++EIA +L +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 15  GLSSREMEIINLVADGLTNQEIAVRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 74

Query: 233 YIC 235
            IC
Sbjct: 75  KIC 77


>gi|332974286|gb|EGK11218.1| hypothetical protein HMPREF9374_2036 [Desmospora sp. 8437]
          Length = 438

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 86/235 (36%), Gaps = 25/235 (10%)

Query: 11  SSSLQELS-PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           S SL++L    +  I    + R  AL+  +S        + +  +++Y +D  ++  +  
Sbjct: 217 SRSLEDLLTDSVQFIVENTRHRRGALFWYSSVT------RTVEGIYSYRVDLTEVRQVRA 270

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHK 128
                  +        PI      ++  +        +        + +A  +       
Sbjct: 271 LESNIPGIAWAIRETRPIY----LQDAKLFFPLHYVKQFR----LTSLLACTLYGENRQP 322

Query: 129 NGYVIFTSEFLMLAN------EVIIEAHGACYQVITDFL---ELFKKRSSAARNLTERET 179
            G+++   +             ++         V+   L        R  A++ LT RE 
Sbjct: 323 VGFLLLDQDGEPFDPPDSKGFRLLEVLVARVSMVLRVKLYESTPLSPRPPASKLLTRREQ 382

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LQ+   GY+++ I E L +S HT   Y  +   KL+A NR +A+AK  R G I
Sbjct: 383 ELLQMIAYGYSTKHIGEILHISEHTAAEYAQTILRKLNAKNRPEAVAKGFRLGMI 437


>gi|326776281|ref|ZP_08235546.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656614|gb|EGE41460.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 222

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
            FP  L   +            +   +I E              +      +   LT RE
Sbjct: 109 TFPELLHAVRVVAGGHALLAPEITGRLIAEFTR---------QRVSAPPPRSVDGLTARE 159

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L   G ++ +IA++L ++ HTV  ++     K+   +R QA+  A   G +
Sbjct: 160 VEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLV 215


>gi|282853975|ref|ZP_06263312.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583428|gb|EFB88808.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314923372|gb|EFS87203.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314966719|gb|EFT10818.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981049|gb|EFT25143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315093364|gb|EFT65340.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|327327545|gb|EGE69321.1| nitrate/nitrite response regulator protein NarL [Propionibacterium
           acnes HL103PA1]
          Length = 210

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + +   A G           L  +  S   +LT RE   L+ +
Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMVRMRSPRTSLTAREFDVLEAS 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +IAE L +S  TV  +L     KL   +R  A+AKA   G+I
Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|241889344|ref|ZP_04776645.1| two-component response transcriptional regulator [Gemella
           haemolysans ATCC 10379]
 gi|241863887|gb|EER68268.1| two-component response transcriptional regulator [Gemella
           haemolysans ATCC 10379]
          Length = 199

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   LT +E   L    +G  ++EIA +L LS  T+  Y+ +   KL+  NR
Sbjct: 127 ELMENIFNSHNPLTNQEKIILLKIKEGLPNKEIANELFLSEGTIRNYISNILTKLNCKNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+ K+   G++
Sbjct: 187 TEAVKKSTEEGWL 199


>gi|119964473|ref|YP_946300.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119951332|gb|ABM10243.1| putative Transcriptional regulator, LuxR-family [Arthrobacter
           aurescens TC1]
          Length = 424

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 160 FLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            L L    + A       L  RE   LQL   G  +  IA  LG+S +TV  +L +   K
Sbjct: 346 VLPLDPPSTPAGDVAEWGLAARELEVLQLLAAGQRNRTIATDLGISENTVKFHLRNLFRK 405

Query: 216 LDAVNRIQAIAKAIRFGY 233
           LD  +R +AIA A   G 
Sbjct: 406 LDVRSRTEAIALAHSAGL 423


>gi|71068204|gb|AAZ23059.1| probable putative response regulator [Streptomyces fradiae]
          Length = 227

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 3/197 (1%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           I+   + P  ++ +    +   D   +   + E  G             ++ +       
Sbjct: 28  IDVVGEAPDGKRGVEVSRSVHPDVVLMDVRMPEMDGLAAARALLDPPPGVVHRPKVLMLT 87

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                             +G              V   +    L    +           
Sbjct: 88  TFDVDDYVYEALRAG--ASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR-RLIAEFAK 144

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                     +     LT RET  L L   G +++EIA +L L+  TV  ++G    KL 
Sbjct: 145 QRPATARGNPALRLNGLTPRETEVLGLIARGLSNQEIAGRLVLAEQTVKTHVGRVLAKLT 204

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R QA+  A   G +
Sbjct: 205 LRDRAQAVVFAYESGLV 221


>gi|326334144|ref|ZP_08200369.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325948061|gb|EGD40176.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 215

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVI--------IEAHGACYQVITDFLELFKKRSSAAR 172
            +R G         T   L+ A + +            G         + +         
Sbjct: 95  TIRGGARGYVTKTITGSELVAAIQRVSGGDAVFSPRLAGFVLDAFAGTIAIA-DIDEDLD 153

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   ++L   GY+ +E+A +L +S+ TV  ++ +   KL   +R +    A    
Sbjct: 154 RLTEREREVMRLIARGYSYKEVAGELFISIKTVETHMSNVLRKLQLSSRHELTRWANDRR 213

Query: 233 YI 234
            +
Sbjct: 214 LL 215


>gi|297626956|ref|YP_003688719.1| Two-component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922721|emb|CBL57298.1| Two-component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 221

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G++ +EIAE L +S  TV  +  +   KL   +R++    AIR G 
Sbjct: 159 LTPREEEILKLIAEGHSGKEIAEMLFISPKTVERHRANLLEKLGMKDRLELTRYAIRVGL 218

Query: 234 I 234
           I
Sbjct: 219 I 219


>gi|291298992|ref|YP_003510270.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568212|gb|ADD41177.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 203

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 2/195 (1%)

Query: 40  SALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH-FNSGLLPIIW-QSIQEETV 97
           ++    +      +   +   +     +   +              + +   + + +   
Sbjct: 6   TSSPIAQECPSATDEDPWMWVATAAYRVARASSYGPCPDADLRQLQVAVRAARGVGDPAP 65

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
            +++G L   L G +    G   PV  G+           +                   
Sbjct: 66  RQNTGHLVPGLTGTVTQKNGAVIPVARGYGHTMTDQPARGYGRTLTTQPGAEPRGIGPRT 125

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           + +    +  S   + LT RE   L  A  G ++E I  +L +S HT+  +L     K+ 
Sbjct: 126 SAYYRGDQLPSINGKQLTVREYQILNCAAQGKSNEHIGRELFVSEHTIKTHLRRLFDKIG 185

Query: 218 AVNRIQAIAKAIRFG 232
           A NR  A+A A R G
Sbjct: 186 AANRAHAVAIAFRQG 200


>gi|149914863|ref|ZP_01903392.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b]
 gi|149811051|gb|EDM70888.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b]
          Length = 252

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 10/227 (4%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILIE 70
           SS++E+                         +          L  N+  D  D+      
Sbjct: 15  SSVEEVWKIHTRRMADYGFDRIMYGYTRYRTETSLGDPDDFVLLTNHHQDYADVFIGEGL 74

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFP---VRL 124
            +    +           W  + +  +      + +  +         AG +     V  
Sbjct: 75  YFYAPMVKWALDNEGACSWSVMADRKLSGGMSEAERKVIEFNRRHGVTAGYSISFKSVTP 134

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSC 181
                  +    +    A + I   +G     + + + L           R LT R+   
Sbjct: 135 RSKGAIALTARRDLDQPAVDAIWAKYGHEILTLNNVVHLRILTLPYTTKGRTLTRRQREV 194

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L   GDG T ++IA  +GL+  TV  +L  A   L+     QA+ KA
Sbjct: 195 LAWVGDGKTIQDIAVLMGLTPATVEKHLRLARDSLNVETTAQAVLKA 241


>gi|108799996|ref|YP_640193.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119869121|ref|YP_939073.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|108770415|gb|ABG09137.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119695210|gb|ABL92283.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
          Length = 218

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 9/117 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRS--SAARNLTE 176
               GY++ ++    L+  V   A G           V+ ++  + ++     +A  LTE
Sbjct: 100 AGATGYLVKSASKAELSAAVRATADGRAVFTPGLAGLVLGEYRRIAQRPDTGDSAPTLTE 159

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RET  L+    G T+++IA +L LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 160 RETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216


>gi|298250158|ref|ZP_06973962.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548162|gb|EFH82029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1003

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 137  EFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                  +  +   +              + +   S    L++RE   L L   G+++ EI
Sbjct: 904  STSAAQSCSLGYLNRLLSAFHGTHAPQPVQENVISLTEQLSQREQEVLHLLASGHSNAEI 963

Query: 195  AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            AE L + ++TV  +L +   KL   NR QAIA+A     +
Sbjct: 964  AETLIIGLNTVKTHLKNIYGKLGTHNRTQAIAQARTLHLL 1003


>gi|261380927|ref|ZP_05985500.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava
           NJ9703]
 gi|284796180|gb|EFC51527.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava
           NJ9703]
          Length = 218

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   A++ 
Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210


>gi|326331827|ref|ZP_08198114.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
 gi|325950324|gb|EGD42377.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
          Length = 224

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 151 GACYQVITDFLELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            A   +I+ +L++ ++       +     LT RE   L L   G +++EIA++L +S  T
Sbjct: 131 AATRSLISRYLKVDRRATGGRFDARRLEELTPREREILVLVAGGLSNQEIADELVISPFT 190

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              ++ +   KLDA  R Q +  A   G +
Sbjct: 191 AKTHVNNMMTKLDAPGRAQLVIWAYESGLV 220


>gi|313837284|gb|EFS74998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928042|gb|EFS91873.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314972055|gb|EFT16153.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907167|gb|EGG26933.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 217

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           ++ T    +     ++       +VI        K      NLT RE    +L   G ++
Sbjct: 108 LLVTGLRQVAEGHALLAPE-VTRRVIARSASRLAKLDRRVENLTSREIEVTRLVARGLSN 166

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA +L +S  TV  ++ S   K D  +R+Q +  A   G I
Sbjct: 167 AEIAAELTVSEATVKTHVSSCLTKCDLRDRVQLVVLAYESGLI 209


>gi|307327124|ref|ZP_07606313.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887205|gb|EFN18202.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 216

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 41/95 (43%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              +  + ++        +        +  S  A  LT+RE   +Q    G T+ EIA +
Sbjct: 119 RAAVRGDAMVAPQITLRLLQHFTKARRRGASEPAEPLTDREEEVIQGIARGLTNPEIAAE 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           L ++  TV  +LGS   KL   NR++  A A R G
Sbjct: 179 LYIAPSTVKTHLGSVQAKLGLRNRVEVAAWAFRSG 213


>gi|289770298|ref|ZP_06529676.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289700497|gb|EFD67926.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 235

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 7/138 (5%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +         +            V               L  
Sbjct: 97  FDLDEYAYSGLRAGASGFLVKDALPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPA 156

Query: 164 FKKRS-------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
              R             LTERET  L++ G G+T+ EIAE+L L+  TV  ++G    K 
Sbjct: 157 AGTRDHTPGSPDPRLSPLTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKT 216

Query: 217 DAVNRIQAIAKAIRFGYI 234
            + +R+QA+  A     +
Sbjct: 217 GSRDRVQAVILAYETKLV 234


>gi|229589665|ref|YP_002871784.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361531|emb|CAY48407.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 504

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194
               EV+ +A      +I          S    N     LT RE   L L  +G   +EI
Sbjct: 397 AAIEEVMQDASWFSQTLIEKLANAKSVNSPNQPNISFTDLTARERDVLGLICEGLADKEI 456

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L L+ +TV  ++ +   KL   +R  AI  A   G 
Sbjct: 457 ALRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 495


>gi|324996115|gb|EGC28026.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327460591|gb|EGF06926.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327488948|gb|EGF20745.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|332365506|gb|EGJ43266.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 199

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEQGWL 199


>gi|320160834|ref|YP_004174058.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994687|dbj|BAJ63458.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 222

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF------LELFKKRSSAARNLT 175
           +R G           E L+ A E +          +T          + ++ +SA  NL+
Sbjct: 101 IRSGASGYILKQIGGEDLIRALESVGRGEALLDPAVTQRVFQEVRRAVKEEEASAFANLS 160

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++E   L L  +G T+ EIA+ L L   TV  Y+ S   KL   NR +A A A+    
Sbjct: 161 QQEKHVLLLVSEGKTNREIAKALFLGEGTVRNYVSSILSKLGVSNRAEAAAYAVEHNL 218


>gi|300859427|ref|YP_003784410.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686881|gb|ADK29803.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302207104|gb|ADL11446.1| Two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis C231]
 gi|302331665|gb|ADL21859.1| Two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis 1002]
 gi|308277359|gb|ADO27258.1| Two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 212

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   A G      T    L  +  +   +LT RE   L+L 
Sbjct: 104 AGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRLMTRVRTPRTSLTPRELEVLKLV 163

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +I   L LS  TV ++L     KL   +R  A+A A   G +
Sbjct: 164 AGGSSNRDIGRVLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGVL 212


>gi|300782719|ref|YP_003763010.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792233|gb|ADJ42608.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 42/162 (25%), Gaps = 19/162 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138
           +          ++  R+   L     +A  V         VI                  
Sbjct: 65  LDVHMPDGGGAEVLRRVRPELPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSKELV 124

Query: 139 ------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                             G       D              LT RE   L+L   GY  +
Sbjct: 125 RAVVRVSDGDAVFSPRLAGFVLDAFADRPGSAPINDPELDLLTPRERDVLRLLARGYAYK 184

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L +SV TV  ++ S   K    NR +    A     +
Sbjct: 185 EIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 226


>gi|221197390|ref|ZP_03570437.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
 gi|221204064|ref|ZP_03577082.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221176230|gb|EEE08659.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221183944|gb|EEE16344.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
          Length = 510

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLEL 163
                +  +  +         ++  S+      E+       + +A      +I     +
Sbjct: 357 RDCVVSADSVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANV 416

Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +  +  A      LT RE     L   G   +EIA +LGL+ +TV  ++ +   KLD  
Sbjct: 417 RRANAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVH 476

Query: 220 NRIQAIAKAIRFGYI 234
           +R +AI  A   G +
Sbjct: 477 SRGEAIVWARERGIV 491


>gi|161521689|ref|YP_001585116.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352145|ref|YP_001947772.1| transcriptional regulator [Burkholderia multivorans ATCC 17616]
 gi|221210733|ref|ZP_03583713.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
 gi|160345739|gb|ABX18824.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336167|dbj|BAG45236.1| transcriptional regulator [Burkholderia multivorans ATCC 17616]
 gi|221169689|gb|EEE02156.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
          Length = 510

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLEL 163
                +  +  +         ++  S+      E+       + +A      +I     +
Sbjct: 357 RDCVVSADSVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANV 416

Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +  +  A      LT RE     L   G   +EIA +LGL+ +TV  ++ +   KLD  
Sbjct: 417 RRANAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVH 476

Query: 220 NRIQAIAKAIRFGYI 234
           +R +AI  A   G +
Sbjct: 477 SRGEAIVWARERGIV 491


>gi|82703694|ref|YP_413260.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411759|gb|ABB75868.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 257

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162
           + S  L+   L                 +  FT     L+             +    + 
Sbjct: 116 RFSNDLKRENLQRIAAHGMFDTNGRTTCFFTFTQISAALSERHAYFLELLMPHMHMALVR 175

Query: 163 L-----FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +       K+ +        +T+RET  L+    G ++ EIA+ L +S  TV  ++    
Sbjct: 176 MLFHERHHKQGAVGERSRKLITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKIL 235

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KLD  NR  A+AKA+    
Sbjct: 236 KKLDVNNRAHAVAKAMALKI 255


>gi|78063527|ref|YP_373435.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971412|gb|ABB12791.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 514

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 17/163 (10%)

Query: 89  WQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFTSEFLMLA 142
           WQ I+       +     V++                  +         ++  S+     
Sbjct: 329 WQRIENRLARDGNVRNADVQIRTREGDVRDCVVSADPVAIHGRDCLLVALLDISDRKRTE 388

Query: 143 NEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTS 191
            E+       + +A      +I     + +  +  A      LT RE     L   G   
Sbjct: 389 MELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLCHGLAD 448

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EIA +LGL+ +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 449 KEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|319638279|ref|ZP_07993042.1| LuxR family Transcriptional regulator [Neisseria mucosa C102]
 gi|317400552|gb|EFV81210.1| LuxR family Transcriptional regulator [Neisseria mucosa C102]
          Length = 218

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   L     G++++ IA  L L+  TV  ++ +   KL+  +R+QA   A++ 
Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210


>gi|16130130|ref|NP_416697.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109009|ref|AP_002789.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           W3110]
 gi|170081813|ref|YP_001731133.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901367|ref|YP_002927163.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BW2952]
 gi|400374|sp|P31802|NARP_ECOLI RecName: Full=Nitrate/nitrite response regulator protein narP
 gi|304917|gb|AAA24200.1| nitrate/nitrite response regulator [Escherichia coli]
 gi|1788521|gb|AAC75253.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675300|dbj|BAE76656.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K12 substr.
           W3110]
 gi|169889648|gb|ACB03355.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860866|gb|ACR62864.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BW2952]
 gi|260448714|gb|ACX39136.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|315136825|dbj|BAJ43984.1| transcriptional regulator NarP [Escherichia coli DH1]
          Length = 215

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|282862235|ref|ZP_06271298.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563260|gb|EFB68799.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 230

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G+++++IAE+L +S  TV  ++  A  KL A +R Q +  A   
Sbjct: 163 DALTGREREVLVLVAGGHSNDQIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYES 222

Query: 232 GYI 234
           G +
Sbjct: 223 GLV 225


>gi|239983191|ref|ZP_04705715.1| two component LuxR family transcriptional regulator [Streptomyces
           albus J1074]
          Length = 326

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 11/209 (5%)

Query: 28  IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH-FNSGLLP 86
           ++A   A  +     +      L+     +  D   +   L      + + H       P
Sbjct: 43  LRALFAATPSFRIEGEAENGDALVELARLHAPDVVLMDAALPGPRVLEVVRHLARDQPHP 102

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLP--FAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144
           I    +  E     +  L     G       +G    +  G               ++  
Sbjct: 103 IGVVLLVSEQGPADTWVLEAARAGARGLLLKSGGQEAILSGVRDVAAGGIAMSTEFVSQ- 161

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                      + + +L   ++       LT RE    +L   G T+++I+ +L LS  T
Sbjct: 162 -------ILKALHSAYLPAAERPFRDISLLTPREMQVFRLVSQGLTNQQISNRLVLSEAT 214

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V ++      KLD  NR+ A+  A   G 
Sbjct: 215 VKSHFNRICHKLDLRNRVDAVILAYETGI 243


>gi|254477132|ref|ZP_05090518.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
 gi|214031375|gb|EEB72210.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
          Length = 204

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 32/72 (44%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E        A  L+ RE   L     G +++EIA +L L   T+  ++ +   KLDA NR
Sbjct: 132 EAEAPSHPLADKLSPREIEVLDGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNR 191

Query: 222 IQAIAKAIRFGY 233
            QA   A   G 
Sbjct: 192 TQAALTAKEAGL 203


>gi|262403730|ref|ZP_06080288.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586]
 gi|262350234|gb|EEY99369.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586]
          Length = 202

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       +        +  +L     
Sbjct: 74  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMRGEKAFSESVERYLLNRDD 133

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 134 ASNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 193

Query: 227 KAIRF 231
             +  
Sbjct: 194 LYLER 198


>gi|300859475|ref|YP_003784458.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686929|gb|ADK29851.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302207158|gb|ADL11500.1| Two-component response regulator ChrA [Corynebacterium
           pseudotuberculosis C231]
 gi|302331719|gb|ADL21913.1| Two-component response regulator ChrA [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277411|gb|ADO27310.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Corynebacterium
           pseudotuberculosis I19]
          Length = 199

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 44/109 (40%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + V+    G           L ++ S   + L+ RE   LQ  
Sbjct: 91  AGAMGYLLKDAPEAALHDAVVATFEGRRTLAPEVANALMQRVSKPRQALSTREIEILQNL 150

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ ++A KL +S  TV  +L     KL   NR  AI  A +   I
Sbjct: 151 EQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199


>gi|297531030|ref|YP_003672305.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254282|gb|ADI27728.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
          Length = 200

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+ E + L L     T+ EI E+L +S  TV  ++ S   KL   +R  A+ KA R G
Sbjct: 138 PLTDMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFRLG 197

Query: 233 YI 234
            +
Sbjct: 198 LL 199


>gi|291295044|ref|YP_003506442.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470003|gb|ADD27422.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 194

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               ++    L L  + R+     LT RE   LQ    G +++EIA ++ +S  TV  +L
Sbjct: 108 ALAERLRRLGLGLEPRLRAPELPRLTAREQEVLQWMAQGLSTKEIARQMHISPETVKDHL 167

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL+A NR++A+ +A   G +
Sbjct: 168 LRLYEKLEARNRVEALERARSLGLL 192


>gi|330469956|ref|YP_004407699.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328812927|gb|AEB47099.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 218

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 151 GACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           G    V+ ++  L            A  LTERET  L+L   G + ++IAE+LGLS  TV
Sbjct: 129 GLAGLVLGEYRRLAAAGGPEPGQDTAPRLTERETEVLRLVAKGMSYKQIAERLGLSHRTV 188

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++ +   KL   NR++    AI  G 
Sbjct: 189 QNHVQNTLGKLQLHNRVELTRYAIERGL 216


>gi|257054552|ref|YP_003132384.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584424|gb|ACU95557.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 229

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 19/162 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +          ++  R+   L     +A  V         VI           +++  ++
Sbjct: 68  LDVHMPDGGGAEVLRRVRPELPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSRELV 127

Query: 148 EAHGACY--------QVITDFLELFKKRS-------SAARNLTERETSCLQLAGDGYTSE 192
            A             ++    L+ F  R             LT RE   L+L   GY  +
Sbjct: 128 SAVMRVADGDAVFSPRLAGFVLDAFADRPGSEPINDPDLDLLTPRERDVLRLLARGYAYK 187

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L +S+ TV  ++ S   K    NR +    A     +
Sbjct: 188 EIASELFISIKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 229


>gi|227546539|ref|ZP_03976588.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227212856|gb|EEI80735.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 231

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228

Query: 232 GYI 234
             +
Sbjct: 229 RIV 231


>gi|213693023|ref|YP_002323609.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524484|gb|ACJ53231.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320459203|dbj|BAJ69824.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 231

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 169 DRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 228

Query: 232 GYI 234
             +
Sbjct: 229 RIV 231


>gi|307329696|ref|ZP_07608853.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884636|gb|EFN15665.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 231

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---- 173
           +A  +R G          +E L+ A   I +         T  L      + A       
Sbjct: 93  VAQALRAGAGGFIGKGIGAEDLLAAVRTIADGDTLLSPAATRSLVARFLATPADAPPRHA 152

Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   + L   G +++EIAE++ LS  TV A++  A  KL+A +R Q +  A
Sbjct: 153 ERLSVLTPREREMVALVATGLSNQEIAEQMFLSPFTVRAHVQRAMTKLEARDRAQLVVIA 212

Query: 229 IRFGY 233
            R G 
Sbjct: 213 YRTGL 217


>gi|297161600|gb|ADI11312.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 216

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LTERE   L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 154 SLTEREREVLALIADGRSNREIARALILSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 213

Query: 233 Y 233
            
Sbjct: 214 I 214


>gi|228996711|ref|ZP_04156348.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           mycoides Rock3-17]
 gi|228763030|gb|EEM11940.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           mycoides Rock3-17]
          Length = 55

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T++EI +KL +S+ TV  ++ +   KL   NR++AI KA+  G I
Sbjct: 5   LATGATNKEIGKKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLI 54


>gi|158334970|ref|YP_001516142.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158305211|gb|ABW26828.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT  ET  +QL   G ++ EIA+ L +S  TV +++ +   K    NR +    AI    
Sbjct: 155 LTPTETKVIQLVAKGMSNREIADDLSVSQRTVESHVSNMLGKTGLNNRTELARWAIEQRM 214

Query: 234 I 234
           +
Sbjct: 215 V 215


>gi|109898606|ref|YP_661861.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700887|gb|ABG40807.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 215

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K     ++ LT RE   L     G +S+EIA  L +S  TV A+  +   KL+  +  
Sbjct: 142 IDKPIKDTSQKLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLA 201

Query: 223 QAIAKAIRFGYI 234
           + I  A+  G +
Sbjct: 202 ELICYAVDHGLV 213


>gi|302873358|ref|YP_003841991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
 gi|307688472|ref|ZP_07630918.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Clostridium cellulovorans 743B]
 gi|302576215|gb|ADL50227.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
          Length = 895

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   LQ    G T+ EIAEK  +S++TV  +L +   KLD  +R +A+ KA   
Sbjct: 833 ELLSKREIEILQSLEQGATNSEIAEKSFVSINTVKTHLLNIYTKLDVHSRTRAVVKAKEL 892

Query: 232 GYI 234
             I
Sbjct: 893 KLI 895


>gi|85705256|ref|ZP_01036355.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
 gi|85670129|gb|EAQ24991.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
          Length = 215

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L    +     LT RE + L     G +++++A+ L +SV TV  +  +   KL   + 
Sbjct: 136 SLEPYENPEREQLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIAST 195

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 196 AGLTRYALEHGVL 208


>gi|302524105|ref|ZP_07276447.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302433000|gb|EFL04816.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 222

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 45/162 (27%), Gaps = 19/162 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138
           +          ++  R+   L     +A  V         VI                  
Sbjct: 61  LDVHMPDGGGAEVLRRVRPELPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSKELV 120

Query: 139 ----LMLANEVII--EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                +   + +      G       D              LT RE   L+L   GY  +
Sbjct: 121 RAVVRVADGDAVFSPRLAGFVLDAFADRPGSAPINDPELDLLTPRERDVLRLLARGYAYK 180

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L +SV TV  ++ S   K    NR +    A     +
Sbjct: 181 EIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 222


>gi|254776539|ref|ZP_05218055.1| response regulator receiver domain-containing protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 167

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 152 ACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               V+ ++  + +          LT+RET  L+    G ++++IAEKL LS  TV  ++
Sbjct: 80  LAGLVLGEYRRIAQSKDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHV 139

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
            +   KL   NR++    AI  G 
Sbjct: 140 QATFRKLQVANRVELARYAIEHGL 163


>gi|313201574|ref|YP_004040232.1| LuxR family transcriptional regulator [Methylovorus sp. MP688]
 gi|26005747|dbj|BAC41336.1| transcription regulator like protein EpsA [Methylobacillus sp. 12S]
 gi|312440890|gb|ADQ84996.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688]
          Length = 265

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 141 LANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           + + +    H              L ++ + A   L+ RE   ++   +G T++EI   L
Sbjct: 169 IDSALRQLEHLPVQHPADKEASEDLHEEENEALEQLSSREIEIMEWVRNGKTNQEIGMIL 228

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +S  TV  +L     KLD +NR QA++K
Sbjct: 229 DISSFTVKNHLQRIFKKLDVLNRAQAVSK 257


>gi|182434678|ref|YP_001822397.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463194|dbj|BAG17714.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 232

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177
               GYV+ +     L                GA   +I +FL          AR +TER
Sbjct: 114 AGAAGYVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNFLDRAKDGEDLPARAITER 173

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  +G++S+EIAE L +SV TV  +  +   KL   +R++    AIR G I
Sbjct: 174 EEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 230


>gi|56459293|ref|YP_154574.1| transcriptional regulator NarL [Idiomarina loihiensis L2TR]
 gi|56178303|gb|AAV81025.1| Nitrate/nitrite response regulator (CheY, HTH domain) [Idiomarina
           loihiensis L2TR]
          Length = 219

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 16/137 (11%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGAC-------YQ 155
           RL    +    I   V          I           +  E+++E             +
Sbjct: 72  RLRDSGVTSRIIMLTVSDADDDVVAAITNGADGYLLKDMEPELLLEQIHRAVTGKMVLSE 131

Query: 156 VITDFLELFKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            IT+ L    ++      S   NLT RE   L L   G +++ IA +L +S  TV  ++ 
Sbjct: 132 AITEILATALRQPTQSTTSQLSNLTNREHEILSLIAKGMSNKVIARELDISDGTVKVHVK 191

Query: 211 SATVKLDAVNRIQAIAK 227
               KL   +R++A   
Sbjct: 192 HLLKKLGLRSRVEAAVW 208


>gi|72161807|ref|YP_289464.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71915539|gb|AAZ55441.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 214

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 16/139 (11%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                ++G L   +E   L  A     V       G +                      
Sbjct: 91  ALRAGAAGFLLKDVEAADLLKA-----VHTVARGEGMIAPAVTRR-----------LINE 134

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
              T   E  K   +    LT RE   L   G+G ++++IA +L ++  T   ++     
Sbjct: 135 FAATRPREQEKADPAILERLTPREREVLACIGEGLSNQQIARRLYITETTAKTHVSRILT 194

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KLD  +R+QA   A   G 
Sbjct: 195 KLDLRSRVQAAIVAREVGL 213


>gi|331653626|ref|ZP_08354627.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M718]
 gi|331048475|gb|EGI20551.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M718]
          Length = 225

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 81  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 140

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SERVNQYLHEREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 201 NLLRKLNVRSRVAATIL 217


>gi|170767404|ref|ZP_02901857.1| nitrate/nitrite response regulator NarP [Escherichia albertii
           TW07627]
 gi|170123738|gb|EDS92669.1| nitrate/nitrite response regulator NarP [Escherichia albertii
           TW07627]
          Length = 215

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 14/141 (9%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ---VI 157
              L    +    I   V         +I              EV++EA  A  +   V 
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130

Query: 158 TDFLE--LFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           ++ +   L ++    A       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVSQYLHEREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           +   KL+  +R+ A    ++ 
Sbjct: 191 NLLRKLNVRSRVAATILFLQH 211


>gi|300933089|ref|ZP_07148345.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 212

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L    +     LT RE   L+LAG G ++ +IA++L L+  T+ +++G    KL   NR 
Sbjct: 141 LMDSMNRPMETLTAREIDVLRLAGLGRSNRQIAKELVLTEATIKSHMGRVFTKLGVSNRT 200

Query: 223 QAIAKAIRFGYI 234
            A+A A   G +
Sbjct: 201 AAVAVARERGIL 212


>gi|221069868|ref|ZP_03545973.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220714891|gb|EED70259.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 230

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 20/177 (11%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128
                   P+    +       S   L  +L         +              L    
Sbjct: 53  ARAQLAEHPVAMALVDLGLPDGSGIDLISQLRAADPGMGILVISAWSTEDAILSALRAGA 112

Query: 129 NGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLEL----FKKRSSAARNLTER 177
           NGYV+   + L +   +                ++I +          K       L+ R
Sbjct: 113 NGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRIIAELQPAQPTEAHKAMPPEAVLSTR 172

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  DG T+ EIAE L LS +TV  ++ +   KL   +R +A+++A   G +
Sbjct: 173 ELQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 229


>gi|315225137|ref|ZP_07866954.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
 gi|314944820|gb|EFS96852.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
          Length = 237

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L LA  G++S+EIAE+L +S +TVN +  +   K +  + I+AI  A R G
Sbjct: 176 ALTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDIARRKG 235

Query: 233 YI 234
            +
Sbjct: 236 IL 237


>gi|300785587|ref|YP_003765878.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795101|gb|ADJ45476.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 225

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG    +     ++            A + +++       +           S+    
Sbjct: 105 LRAGALGYLTKDAGRDHIAQAIRT--AAAGQAVLDPTIHARLLAATAHHPDTPPSAPPDG 162

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RET  L     G+++ EIA +L +S  T+   +     K+ A +R QA+  A +   
Sbjct: 163 LTTRETEVLTQLAAGHSNTEIARQLFVSETTIKTRINHIYAKIGAADRAQAVRYAYQHHL 222


>gi|302869854|ref|YP_003838491.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302572713|gb|ADL48915.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 225

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 18/161 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +   +         +A  V         +I           ++ E + 
Sbjct: 65  LDVHMPDGGGRAVLEAMRRTHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPEELT 124

Query: 148 EAHGACY--------QVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193
            A             ++    L+ F  R            LT RE   L+L   GY  +E
Sbjct: 125 GAIRRVADGDAVFSPRLAGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKE 184

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA++L +S+ TV  ++ +   KL   NR +    A     +
Sbjct: 185 IAKELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 225


>gi|221633789|ref|YP_002523015.1| response regulator uvrY [Thermomicrobium roseum DSM 5159]
 gi|221156063|gb|ACM05190.1| response regulator uvrY [Thermomicrobium roseum DSM 5159]
          Length = 221

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEFLMLANEVIIE 148
             +  +   R+    LP   +   V          L    +GYV  +S    L   + + 
Sbjct: 62  PGNGLEALRRIASLGLPTRTLILTVHAEERYLLPVLQAGGSGYVRKSSLHTDLVEAIRLV 121

Query: 149 AH---GACYQVITDFLE--LFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           A              L+  L   R+      A+ L+ERE   L+L   GYT++EIA++L 
Sbjct: 122 ARGEVFIDQAAARTLLQGYLDHARTGEVQDPAQLLSEREREVLRLTAAGYTAQEIADQLF 181

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV  Y      KL    R + +  A+R G +
Sbjct: 182 LSPKTVETYRHRVMQKLGFSRRSELVRFALRIGLL 216


>gi|254463119|ref|ZP_05076535.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium HTCC2083]
 gi|206679708|gb|EDZ44195.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 201

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE + L     G +++E+A  L +SV TV  +  +   KL   +       A+  
Sbjct: 132 DALTGREQTVLLQLAKGQSNKEVAAALNISVRTVETHRKNIKRKLGISSTAGLTRYAMEH 191

Query: 232 GYI 234
           G +
Sbjct: 192 GVL 194


>gi|149203772|ref|ZP_01880741.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. TM1035]
 gi|149142889|gb|EDM30931.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. TM1035]
          Length = 200

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L    +     LT RE + L     G +++++A+ L +SV TV  +  +   KL   + 
Sbjct: 121 SLEPYENPEREQLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIAST 180

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 181 AGLTRYALEHGVL 193


>gi|82544573|ref|YP_408520.1| transcriptional regulator NarP [Shigella boydii Sb227]
 gi|81245984|gb|ABB66692.1| nitrate/nitrite response regulator [Shigella boydii Sb227]
 gi|320185869|gb|EFW60619.1| Nitrate/nitrite response regulator protein [Shigella flexneri CDC
           796-83]
 gi|332093584|gb|EGI98642.1| response regulator [Shigella boydii 3594-74]
          Length = 215

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|110642402|ref|YP_670132.1| transcriptional regulator NarP [Escherichia coli 536]
 gi|191170199|ref|ZP_03031753.1| nitrate/nitrite response regulator NarP [Escherichia coli F11]
 gi|215487411|ref|YP_002329842.1| transcriptional regulator NarP [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559110|ref|YP_002392023.1| transcriptional regulator NarP [Escherichia coli S88]
 gi|218690355|ref|YP_002398567.1| transcriptional regulator NarP [Escherichia coli ED1a]
 gi|306814694|ref|ZP_07448856.1| transcriptional regulator NarP [Escherichia coli NC101]
 gi|312967493|ref|ZP_07781708.1| response regulator [Escherichia coli 2362-75]
 gi|331658272|ref|ZP_08359234.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA206]
 gi|110343994|gb|ABG70231.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           536]
 gi|190909715|gb|EDV69300.1| nitrate/nitrite response regulator NarP [Escherichia coli F11]
 gi|215265483|emb|CAS09885.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218365879|emb|CAR03621.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli S88]
 gi|218427919|emb|CAR08839.2| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli ED1a]
 gi|281179284|dbj|BAI55614.1| nitrate/nitrite response regulator [Escherichia coli SE15]
 gi|294492603|gb|ADE91359.1| DNA-binding response regulator, LuxR family [Escherichia coli
           IHE3034]
 gi|305852088|gb|EFM52540.1| transcriptional regulator NarP [Escherichia coli NC101]
 gi|307554259|gb|ADN47034.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           ABU 83972]
 gi|307626269|gb|ADN70573.1| transcriptional regulator NarP [Escherichia coli UM146]
 gi|312287690|gb|EFR15595.1| response regulator [Escherichia coli 2362-75]
 gi|312946814|gb|ADR27641.1| transcriptional regulator NarP [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320196066|gb|EFW70690.1| Nitrate/nitrite response regulator protein [Escherichia coli
           WV_060327]
 gi|323188081|gb|EFZ73376.1| response regulator [Escherichia coli RN587/1]
 gi|323951986|gb|EGB47860.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323955960|gb|EGB51713.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|330912024|gb|EGH40534.1| nitrate/nitrite response regulator protein [Escherichia coli AA86]
 gi|331056520|gb|EGI28529.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA206]
          Length = 215

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|271962987|ref|YP_003337183.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506162|gb|ACZ84440.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAAR 172
           +    +     GYV+  +    L   V   A G           L       ++   A  
Sbjct: 89  SVFAAMRAGARGYVLKGARKAELVRSVQAVAEGEAIFGPAIAARLTGYFTERERSEPALP 148

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L  +  T+ +IA +LGLS  TV  ++ +   KL   +R  AI +A   G
Sbjct: 149 ELTRREREILGLVAEHLTNPQIAARLGLSQKTVRNHVSAVFSKLQVADRAHAIMRAREAG 208

Query: 233 Y 233
            
Sbjct: 209 L 209


>gi|84497934|ref|ZP_00996731.1| putative two-component system DNA-binding response regulator
           [Janibacter sp. HTCC2649]
 gi|84381434|gb|EAP97317.1| putative two-component system DNA-binding response regulator
           [Janibacter sp. HTCC2649]
          Length = 238

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +                 + +  +      A      +  E+ ++    
Sbjct: 119 RAGARGYVTKTITARDLGTAVRRVADGDAVFSPRLAGFVLDAFGAAAGEIAEVDEE---- 174

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L+ RE   ++L   GY  +E+A++L +SV TV  ++ S   KL   +R +  A A+ 
Sbjct: 175 LDRLSAREREVMRLIARGYQYKEVAKELFISVKTVETHVSSVLRKLQLSSRHELTAWAMG 234

Query: 231 FGYI 234
              +
Sbjct: 235 RRLV 238


>gi|319951571|ref|ZP_08025372.1| regulatory protein, LuxR [Dietzia cinnamea P4]
 gi|319434774|gb|EFV90093.1| regulatory protein, LuxR [Dietzia cinnamea P4]
          Length = 205

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETS 180
            L    +G++  +     L + +   A G    +    L +    K  +    L+ RE  
Sbjct: 89  SLDAGAHGFLSKSLTAPELVSGIEQIAAGKRVTLTGAGLPIMGPDKWPAKEAGLSHREAE 148

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            + L   G ++E+IAE+  LS++TV  Y+ SA  K+D   R QA+A  I  G 
Sbjct: 149 VVSLIVQGLSNEQIAEQCYLSLNTVKTYVRSAYRKMDVATRAQAVAWGIGNGL 201


>gi|260774409|ref|ZP_05883323.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14]
 gi|260610536|gb|EEX35741.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14]
          Length = 209

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 10/183 (5%)

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
            +    ++  YGD           P+    +      ES   L  RL+     F  I   
Sbjct: 23  VEDDIQVVGEYGDAQAAFLALSKKPVDVVIMDISMPDESGLSLLARLKTLHPHFKAIILS 82

Query: 122 VRLGFH------KNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFL--ELFKKRSSAA 171
           +            +G   + S+    +   + I         +  D L      +  +  
Sbjct: 83  IYDSASFVSKAIDSGASGYLSKRCGPSELVDAIRMVARGHRYLCADALFNLSNPQEKNVL 142

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE     L   G  ++EI + L LS  TV+ +  +   KL   N +  I  AI+ 
Sbjct: 143 MELTKREREIFFLLIQGKDAKEIGQVLFLSYKTVHVHRANILNKLGLSNIVDLIRFAIQH 202

Query: 232 GYI 234
             +
Sbjct: 203 RLL 205


>gi|171909690|ref|ZP_02925160.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 212

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 136 SEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDG 188
           S       E I + H         +    ++ F+  +     +  L+ RE   ++L   G
Sbjct: 108 SSAPEKLFEAIRDVHSGGAQFSAHIARRVVQYFRGPTKPVDESEKLSPREGEVIELLASG 167

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           Y  +EIA+KLG+   TV  Y+ +  VKL   NR +A+AK
Sbjct: 168 YIYKEIADKLGIGTETVRTYVKNICVKLRVKNRTEAVAK 206


>gi|332526102|ref|ZP_08402240.1| response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332109945|gb|EGJ10573.1| response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 245

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +K       LT RE+  L     G+T +EIA  +G+   TVN ++ S   KL+  +R +
Sbjct: 175 MEKALPEHERLTPRESEVLTYLSKGFTIKEIASLMGIKWFTVNDHIKSIYKKLNVSSRAE 234

Query: 224 AIAKAIRFGYI 234
           A   A + G +
Sbjct: 235 AAVLASKQGLV 245


>gi|237713861|ref|ZP_04544342.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262409230|ref|ZP_06085774.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|294645794|ref|ZP_06723478.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294809468|ref|ZP_06768172.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446017|gb|EEO51808.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262352977|gb|EEZ02073.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292638873|gb|EFF57207.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443340|gb|EFG12103.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 255

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            +    ++ +  L L       + NLT RE   L+L   G  S+EIA+KL +S+HTVN +
Sbjct: 174 LNLKNGEIFSPSLSLM-----PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIH 228

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
             +   KL   N I+AI      G +
Sbjct: 229 RQNLLRKLGVQNSIEAIRLGQESGLL 254


>gi|253700593|ref|YP_003021782.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251775443|gb|ACT18024.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             + ++    +LT RE    +L   G   +EIA +L +S  TV  Y      KL+  N  
Sbjct: 139 ADEGKNPCKYSLTPREEQAYRLLVVGKNCKEIAYELNISSKTVETYRLKIMKKLNLSNIA 198

Query: 223 QAIAKAIRFGYI 234
           Q +  A++ G +
Sbjct: 199 QLVNHAVQEGIV 210


>gi|188585380|ref|YP_001916925.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350067|gb|ACB84337.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 232

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE    QL   G ++++IAEKL ++  TV  Y+ +   KL    R  A+    + 
Sbjct: 171 EELTQREIEIAQLMVAGLSNKKIAEKLFITQGTVKNYITNIYSKLGVKERTSAVLYLQKL 230

Query: 232 GY 233
           G+
Sbjct: 231 GF 232


>gi|144899605|emb|CAM76469.1| DNA-binding response regulator, LuxR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             +    L+ RE+  L L  +G T++EIA  L L   T+  +L +   K+ A NR QA+ 
Sbjct: 153 IPAPFDKLSRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIGAANRAQAVR 212

Query: 227 KAIRFGY 233
            A+  G+
Sbjct: 213 IAMSSGW 219


>gi|21231619|ref|NP_637536.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768259|ref|YP_243021.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991396|ref|YP_001903406.1| Two-component system regulatory protein, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21113311|gb|AAM41460.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573591|gb|AAY49001.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167733156|emb|CAP51354.1| Two-component system regulatory protein, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 213

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L L   G ++++I   LG+S  TV A++ +   KL   +R  A+  A+R 
Sbjct: 147 DALSARETEVLNLVATGCSNKQIGNALGISEETVKAHMKNILCKLGVRDRTHAVTVALRR 206

Query: 232 GYI 234
           G +
Sbjct: 207 GIL 209


>gi|23100305|ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778537|dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 199

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           NGY++  S    LAN +     G          EL          LT RE   L+L  DG
Sbjct: 97  NGYLLKDSPSEDLANSIRAIMAGRKVYA----PELIDMAYEEGNPLTTREEQVLKLIADG 152

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            T++EIA +L L+  TV  Y+ +   KL+  NRI+AI++    G+
Sbjct: 153 KTTKEIAGQLYLTNGTVRNYVSTIMDKLNVSNRIEAISRIKEKGW 197


>gi|308051091|ref|YP_003914657.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307633281|gb|ADN77583.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 204

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 9/148 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146
           +       S       +         + F V         V+              E + 
Sbjct: 56  LDLNMRPLSGLDTLRAIRRDFPRLKVVMFTVSDHPRDVQAVLDAGANGYLVKDSEPEELV 115

Query: 147 --IEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
             +    A   V+T  LE  L +   + A  LT RE    +L  +G +++ I E L +S 
Sbjct: 116 EGLAEVMAGQAVLTPRLEGALAEAEENWAAQLTPRERQIAELIAEGKSNKAIGEALFISE 175

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            T   ++ +   K D  +R++   K   
Sbjct: 176 GTAKVHVKNLMRKTDCHSRVELALKVRE 203


>gi|262202778|ref|YP_003273986.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262086125|gb|ACY22093.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 220

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184
              +GY++  +    L + V   A G            L + R+     LT RE   +  
Sbjct: 110 AGASGYLLKDTPPEELVSAVRGAAAGESALSPAVASRLLSRMRTPPDTVLTPREIEIIAE 169

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++ +IA +L LS  TV ++L  A  KL   +R  A+A+A R G I
Sbjct: 170 VATGRSNRQIARELMLSEMTVKSHLVHAFTKLGVGSRTAAVAEARRRGVI 219


>gi|226365558|ref|YP_002783341.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244048|dbj|BAH54396.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 208

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 41/107 (38%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  S    +   V   A G           L ++       LT RE   L L
Sbjct: 98  DAGAIGYLLKDSTPQEIFAAVRGAAAGQSVLSPPVASRLLQQMQRPEEALTPREAELLTL 157

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              G T++E+ + L +S  TV  +L     KL    R  A++ A+R 
Sbjct: 158 LAKGMTNKELGKALFISEATVKTHLAHIYSKLGVDTRAAAVSVALRR 204


>gi|254476945|ref|ZP_05090331.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
 gi|214031188|gb|EEB72023.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
          Length = 214

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  K +     LT RE + L     G +++++A  L +SV TV  +  +   KL   + 
Sbjct: 135 SLKPKDNPDREALTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISST 194

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 195 AGLTRYALEHGVL 207


>gi|261405834|ref|YP_003242075.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329926559|ref|ZP_08280972.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|261282297|gb|ACX64268.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328939100|gb|EGG35463.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 215

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +L++RE   L L   GY ++EIAEKL +SV TV A+      KL   +R +
Sbjct: 143 ESAEQDPFNSLSQREIEILPLIAKGYGNKEIAEKLFVSVKTVEAHKAKIMEKLKLKSRPE 202

Query: 224 AIAKAIRFGYI 234
            +  A++   +
Sbjct: 203 LVEYALKKKLL 213


>gi|42525668|ref|NP_970766.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|41815679|gb|AAS10647.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|325475224|gb|EGC78409.1| DNA-binding response regulator [Treponema denticola F0402]
          Length = 201

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             RS    +L +RET  L+L  DG  ++EIA +L LS  TV  Y+ S   KL+  +R Q 
Sbjct: 135 PARSQFKEDLNDRETDILELVADGLNNKEIANRLSLSEGTVRNYVSSILEKLNLRDRTQL 194

Query: 225 IAK 227
           +  
Sbjct: 195 VVY 197


>gi|327468268|gb|EGF13753.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 199

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+++E   LQ A  G +++EIAEKL LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+      G++
Sbjct: 187 TEAVRIGQEKGWL 199


>gi|302520212|ref|ZP_07272554.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|318062155|ref|ZP_07980876.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|302429107|gb|EFL00923.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 224

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAG 186
               +      +LA  V         +V    L          A   LTERET  L    
Sbjct: 114 EAVEVVARGEALLAPSVTRRLITEFARVPETVLRGPASPHPGGAYGELTERETEVLVHVA 173

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G +++EIAEKL ++  TV  ++    VKL   +R QA   A     +
Sbjct: 174 RGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAAVFAYENRLV 221


>gi|238752048|ref|ZP_04613532.1| Two component transcriptional regulator, LuxR family [Yersinia
           rohdei ATCC 43380]
 gi|238709748|gb|EEQ01982.1| Two component transcriptional regulator, LuxR family [Yersinia
           rohdei ATCC 43380]
          Length = 237

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L    +    I   V         +I              E++++      +        
Sbjct: 100 LRNEGIDARVIILTVSDARSDVYAMIDAGADGYLLKDSEPEILLDNIRHAAKGEKVFSNE 159

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 160 VVIYLSSRHEQVNPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 219

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 220 NVRSRVAATIM 230


>gi|311895574|dbj|BAJ27982.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 220

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 151 GACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           G    V+ +F  L  +       AA  LT RET  L+L   G +  +IA++L LS  TV 
Sbjct: 126 GLAGLVLGEFRRLATEPGTSAEPAAPQLTPRETEVLRLVAKGLSYRQIADRLVLSHRTVQ 185

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ +   KL   NR++ +  AI  G 
Sbjct: 186 NHVQNTLGKLQLHNRVELVRYAIEQGL 212


>gi|170758988|ref|YP_001788912.1| transcriptional regulatory protein DegU (protease production
           enhancerprotein) [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405977|gb|ACA54388.1| transcriptional regulatory protein DegU [Clostridium botulinum A3
           str. Loch Maree]
          Length = 219

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE    +L   G ++++I   L L+  TV  Y+     KL+  NR +      + 
Sbjct: 158 DALTPREREVAKLVSQGKSNKDICNILFLTEGTVKNYVTRILEKLELNNRTELALFINQD 217

Query: 232 GY 233
           G 
Sbjct: 218 GL 219


>gi|152987214|ref|YP_001346031.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962372|gb|ABR84397.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7]
          Length = 496

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 11/138 (7%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITD 159
              G     +  A  +         ++  S+      E+       + +       +I  
Sbjct: 348 DRNGLDCLVSAEAVSLNEQDCVLVALLDISDRRRTEMELVHAIETVMQDTSWFSRTLIEK 407

Query: 160 FLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
              + +  +        +LT RE     L   G   +EIA++LGL+ +TV  ++ +   K
Sbjct: 408 LANVRRANAPGTGAELADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAK 467

Query: 216 LDAVNRIQAIAKAIRFGY 233
           LD  +R +AI  A   G+
Sbjct: 468 LDVHSRGEAIVWARERGF 485


>gi|110634798|ref|YP_675006.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285782|gb|ABG63841.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 554

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L     G     S  L  A E       A      D L L +      + LT RE   L+
Sbjct: 447 LACRGMGDEEGASLELAAAREAFQALGAAPDMARIDRLALPRN---TRKGLTRRELEVLR 503

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G  ++ IA +L LS  T++ +L +   KL   +R  A A A R G +
Sbjct: 504 LVTAGKPNKVIAAELFLSEKTIDRHLSNIFDKLGVSSRTAAAAWAFRQGLV 554


>gi|325002947|ref|ZP_08124059.1| NarL family two-component response regulator [Pseudonocardia sp.
           P1]
          Length = 236

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                 +   L            LT+RE   L+L   G ++  I  +L +S  TV  ++G
Sbjct: 156 ARSASAMVRSLS---GGMPDRERLTDRELDVLRLLARGLSNRAIGAELFISETTVKFHVG 212

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL    R +A+  A + G +
Sbjct: 213 NLMRKLMVSRRAEAVYAATKLGLL 236


>gi|224369516|ref|YP_002603680.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding
           protein [Desulfobacterium autotrophicum HRM2]
 gi|223692233|gb|ACN15516.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding
           protein [Desulfobacterium autotrophicum HRM2]
          Length = 219

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQL  +G+ + EIA  L +S  TV A+      KL      +    AIR 
Sbjct: 154 DLLSAREREVLQLIAEGHANREIAGHLYISPKTVEAHRNHIQKKLGLNGTAELTKYAIRK 213

Query: 232 GYI 234
           G +
Sbjct: 214 GLV 216


>gi|88799767|ref|ZP_01115341.1| two-component response regulator NarL [Reinekea sp. MED297]
 gi|88777501|gb|EAR08702.1| two-component response regulator NarL [Reinekea sp. MED297]
          Length = 213

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 17/157 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +      +   Q   +L    +    I F V          I           +  E  +
Sbjct: 53  LDLNMPGQDGLQTLNKLRDAGVDARIIVFTVSDDQADIHRAIHNGADGYLLKDIDPEEFL 112

Query: 148 EAHGACYQ-----------VITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           E+   C Q           V+   L   L +    A R+LT+RE   L+L   G  ++ I
Sbjct: 113 ESIKRCMQGEQVVSPGIQDVVRSALSKRLPENLHPALRDLTDREKDVLRLIAAGLPNKSI 172

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            + L ++  TV  ++     KL   +R++A   A   
Sbjct: 173 GQNLDIAEGTVKVHVKRVLSKLGLRSRVEAAIFAHEH 209


>gi|323492987|ref|ZP_08098124.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323312766|gb|EGA65893.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 212

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           SS    L+ RE + L+L  +G +S+E+A  L +S  TV  +  +   KLD  +  +    
Sbjct: 145 SSKPNPLSRREEAILKLVAEGKSSKEVASILNISYRTVETHRQNIKHKLDLHSTAELAKY 204

Query: 228 AIRFGYI 234
           A+  G +
Sbjct: 205 AVEKGIV 211


>gi|238025036|ref|YP_002909268.1| FOG PAS/PAC domain-containing protein [Burkholderia glumae BGR1]
 gi|237879701|gb|ACR32033.1| FOG: PAS/PAC domain protein [Burkholderia glumae BGR1]
          Length = 529

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLEL 163
                +  A  +         ++  SE      E+I        +A      +I     +
Sbjct: 365 RDCVVSADAVAIHGQDCILMALLDISERKRTEMELIQAIETAMQDASWFSRTLIEKLANV 424

Query: 164 FKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            + ++  A     +LT RE     L   G   +EIA +LGL+ +TV  ++ +   KLD  
Sbjct: 425 RRAKAPDAGAQLADLTARERDVFDLLCHGLPDKEIANRLGLAPNTVRNHVATIYTKLDVH 484

Query: 220 NRIQAIAKAIRFGYI 234
           +R +AI  A   G +
Sbjct: 485 SRGEAIVWARERGIV 499


>gi|291302402|ref|YP_003513680.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571622|gb|ADD44587.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   + LAG G ++EEI  KL LS  T   ++  A +KL A +R Q +  A   
Sbjct: 156 EQLTEREREVVALAGTGLSNEEIGAKLFLSPATAKTHISRAMIKLGARDRAQLVVFAYES 215

Query: 232 GYI 234
           G +
Sbjct: 216 GLV 218


>gi|237732242|ref|ZP_04562723.1| transcriptional regulator NarP [Citrobacter sp. 30_2]
 gi|226907781|gb|EEH93699.1| transcriptional regulator NarP [Citrobacter sp. 30_2]
          Length = 225

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA         A 
Sbjct: 81  LNALRRDGVTAQIIILTVSDAASDVYALIDAGADGYLLKDSDPEVLLEAIRNGAKGGKAF 140

Query: 154 YQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++++L    LF  +      LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 SARVSEYLRERDLFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 201 NLLRKLNVRSRVAATIL 217


>gi|254446726|ref|ZP_05060201.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198256151|gb|EDY80460.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 222

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               C  ++ +   +    +     L+ RE   LQ   +G+++++IAE L +SV T+ A+
Sbjct: 122 LCPICASLLRESHLVGSAVAKKKNRLSNREREVLQAVAEGFSTKQIAEMLEVSVKTIEAH 181

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
             +   KLDA + ++    A   G I
Sbjct: 182 RANLMKKLDARSAVELTRCAFELGII 207


>gi|194292820|ref|YP_002008727.1| response regulator in two-component regulatory system with narx,
           regulates anaerobic respiration and fermentation
           (luxr/uhpa familiy) [Cupriavidus taiwanensis LMG 19424]
 gi|193226724|emb|CAQ72675.1| response regulator in two-component regulatory system with NarX,
           regulates anaerobic respiration and fermentation
           (LuxR/UhpA familiy) [Cupriavidus taiwanensis LMG 19424]
          Length = 217

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             +   +    + ++ +     A ++     + L +  +     LT RE   +Q    G 
Sbjct: 114 AGIRRAAAGEPVISDSMTAKLVAQFRAPVPAVALRQDDAP---RLTAREREIVQGLARGE 170

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +++EIA  LG++  TV  ++ +   KL+  +R+Q    A+  G 
Sbjct: 171 SNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214


>gi|183984750|ref|YP_001853041.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           marinum M]
 gi|183178076|gb|ACC43186.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           marinum M]
          Length = 216

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    LP   +                    G+++  S  
Sbjct: 56  DVALLDYRMPRMDGAQVAAAVRSNELPTRVLLISAHDESAIVYQALQQGAAGFLLKDSTR 115

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++ +  A  L+ RE   L     G +   I
Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPMAPVLSAREREVLHRIAKGQSIPAI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL   +R  A+A+A+R G +
Sbjct: 176 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 215


>gi|114046728|ref|YP_737278.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113888170|gb|ABI42221.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 225

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           H     V+          +       L+ERE   L     G++++EIA  + L+  TV  
Sbjct: 139 HLIEPSVLEQMQQSSATAQSVPTHDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKN 198

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KLD  +R QA+ K ++   I
Sbjct: 199 HVSTILTKLDCRDRTQAVLKGLQLSLI 225


>gi|333026039|ref|ZP_08454103.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745891|gb|EGJ76332.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 220

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAG 186
               +      +LA  V         +V    L          A   LTERET  L    
Sbjct: 110 EAVEVVARGEALLAPSVTRRLITEFARVPETVLRGPASPHPGGAYGELTERETEVLVHVA 169

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G +++EIAEKL ++  TV  ++    VKL   +R QA   A     +
Sbjct: 170 RGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAAVFAYENRLV 217


>gi|312867968|ref|ZP_07728172.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096372|gb|EFQ54612.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
          Length = 199

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           +++   H           EL +   +    L+ +E + L+    G +++EIA++L LS  
Sbjct: 109 DLMATLHAVLAGQKEYSPELMEGILTHPNPLSPQEQAVLKEVAKGASNQEIADRLFLSNG 168

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+  Y+ +   KL+A NR +A   A   G++
Sbjct: 169 TIRNYMSAILTKLNAENRTEAARIAQEKGWL 199


>gi|260899471|ref|ZP_05907866.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|308109241|gb|EFO46781.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
          Length = 217

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               +                 +     +++    + +  +     LT RE   L     
Sbjct: 112 DKVMMGLKGILNGENWLSRDILNQLIGYLLSLNNTVGELETKLEMELTRRELQVLSALCQ 171

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G ++ +IA+ L +S HTV ++L S   KL+  NR+QAI  A R 
Sbjct: 172 GGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215


>gi|226356513|ref|YP_002786253.1| DNA-binding response regulator [Deinococcus deserti VCD115]
 gi|226318503|gb|ACO46499.1| putative DNA-binding response regulator [Deinococcus deserti
           VCD115]
          Length = 216

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 140 MLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
             +++ + +A  A  +            L    +      +LT +ET  LQL   G ++ 
Sbjct: 110 DASSDTLADAIHAAARGEVRLHPEAARRLVRDFRSPEMRESLTPKETIVLQLIARGCSNR 169

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +IA+  G+S  TV  ++     KL   +R QA   A+R G 
Sbjct: 170 DIAQDQGVSEATVKTHVSRLLSKLGLESRTQAALYALRHGI 210


>gi|297191011|ref|ZP_06908409.1| two component system DNA binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297150723|gb|EDY65386.2| two component system DNA binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 213

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 49/109 (44%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V   A G           L  +  + A  LT+RE   LQL 
Sbjct: 103 AGAAGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAEALTKRELEVLQLV 162

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           GDG ++ +I+++L LS  TV ++L     KL   +R  A+A A     I
Sbjct: 163 GDGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211


>gi|256830668|ref|YP_003159396.1| LuxR family transcriptional regulator [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579844|gb|ACU90980.1| transcriptional regulator, LuxR family [Desulfomicrobium baculatum
           DSM 4028]
          Length = 335

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 151 GACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
               + ++ FL   + R +           L++RE   L +   G T+++IA+KL LS++
Sbjct: 241 WFSREAMSAFLLGKQNRPAELSAPENGQADLSQREQEILLMLAAGATNKDIAQKLFLSLN 300

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           TV +++ +   K+D  NR+QA   A R 
Sbjct: 301 TVKSHIYNIYKKIDVPNRLQASLWAARH 328


>gi|71279999|ref|YP_268149.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71145739|gb|AAZ26212.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 215

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  LT RE   L     G TS+EIA+ L +S  TV A+  +   KL   +  + I+ A++
Sbjct: 150 SEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMKTKLGIHSLAKLISYAVK 209

Query: 231 FGYI 234
            G I
Sbjct: 210 HGII 213


>gi|307322284|ref|ZP_07601649.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306892066|gb|EFN22887.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
          Length = 255

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 135 TSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
            +     A   +         Q   + ++L +K       LT RET  L L   G  ++ 
Sbjct: 146 AALLRRPAPRGLAGGGLVAQKQASLEDIDLERKIDFGQDLLTMRETQILDLICVGMQNKI 205

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           IA++LGLS +TV  ++ +   K++  NR +A A+  R
Sbjct: 206 IADRLGLSENTVKVHVRNIYKKMNVRNRTEAAARYFR 242


>gi|297528772|ref|YP_003670047.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252024|gb|ADI25470.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 550

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  LT RE   L+L   G ++ EI+E+L +SVHTV  ++ +   K+   +R Q IA   +
Sbjct: 483 SEQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQ 542

Query: 231 F 231
            
Sbjct: 543 L 543


>gi|270262679|ref|ZP_06190950.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043363|gb|EFA16456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 950

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 13/236 (5%)

Query: 6   LTGKKSS--SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
           +  +++     ++L  +L  +    +           A      +  +         +  
Sbjct: 720 VRLQRADRPGAEQLQRQLEQLARHARIDAEHPCQRAIAQHAALSRSRLLLAAGQMPQACK 779

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG----QLSVRLEGG-LLPFAGI 118
           +   L+ T  ++      +  L  +W     +    ++     Q  + L     L  +  
Sbjct: 780 LLAELV-TEQENRRDWLTAARLRALWSLALWKAGKNAAACTALQPVLPLAEHPHLMRSF- 837

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
              +  G      ++   E     NE          +       L +        L+ERE
Sbjct: 838 ---LDAGDTLQPLLLHMHEGPAACNEQ-GAQLRLADKGALTGERLLQSSHDVYWGLSERE 893

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+L  +G T+++IA  L +S  TV  +L +   KL+  +R QA+++A+    +
Sbjct: 894 LQVLRLIAEGQTNKDIARSLAISAQTVKWHLKNTYAKLNVNSRTQAMSRALEMKLL 949


>gi|251799214|ref|YP_003013945.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546840|gb|ACT03859.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 217

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLT 175
                GYV+  +    L   +   A G  Y       +++ ++++  ++  S      L+
Sbjct: 96  HAGAAGYVLKNAPHEELLTAIRSIAQGDAYLYPTATKRLMKEYVDRMQRGDSGDLFHALS 155

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ERE   L L   GY ++E+AE L +SV TV  +  +   KL   +R + I  A++ G +
Sbjct: 156 EREKEVLSLTAKGYANKEMAEMLVISVKTVETHKSNVMEKLGLKSRPELIKYAMKKGLL 214


>gi|153206810|ref|ZP_01945651.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924176|ref|ZP_02220008.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
 gi|212212538|ref|YP_002303474.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212218401|ref|YP_002305188.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|120577173|gb|EAX33797.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916380|gb|EDR34984.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
 gi|212010948|gb|ACJ18329.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212012663|gb|ACJ20043.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 214

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 117 GIAFPVRLGF-HKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN 173
           G   P+RL      G++  +S+   L      + +        I + L L K  ++A   
Sbjct: 86  GDLLPMRLLEVGVRGFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSKTTTAATSP 145

Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L++RE   L L   G  +E IA++L ++  TVN++      KL   N ++ I  A++
Sbjct: 146 FKKLSDREMEVLLLLAKGKKAEAIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQ 205

Query: 231 FGYI 234
           +G +
Sbjct: 206 YGLV 209


>gi|91788405|ref|YP_549357.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91697630|gb|ABE44459.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 230

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              +++       +            L++RE   L+    GYTS EI  +L +S  TVN 
Sbjct: 144 LARRLLHRLEHTQEAPHPHTAEKRDKLSDREKEVLKAVAAGYTSGEIGSRLMISCQTVNT 203

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R QA+  A   G +
Sbjct: 204 HIKNIYRKLQVRSRAQAVNFAAHRGLL 230


>gi|325675545|ref|ZP_08155229.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553516|gb|EGD23194.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 224

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 3/123 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +G         + +  +   A                     
Sbjct: 104 RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPPLDPE 160

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE+L +SV TV  +  +   K    NR      A R
Sbjct: 161 LDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHR 220

Query: 231 FGY 233
              
Sbjct: 221 RRI 223


>gi|282864894|ref|ZP_06273948.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560319|gb|EFB65867.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 210

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 51/109 (46%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V   A G           L  +  + A+ LT+RE   LQL 
Sbjct: 100 AGAGGYLLKDAPPQELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAQALTKRELEVLQLV 159

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G ++++I+++L LS  TV ++L     KL   +R  A+A A     I
Sbjct: 160 GEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 208


>gi|269837299|ref|YP_003319527.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786562|gb|ACZ38705.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 219

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             + +       ++   A   LT+RE   LQ   DG + +EIAE+L +S  TV  ++ + 
Sbjct: 135 ALRFVDQERRREREARQAFEPLTDREREVLQALADGLSDKEIAERLYISPATVRTHITAI 194

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KLDA +R+QA+  A R   +
Sbjct: 195 LGKLDANSRLQAVVVAARHNLV 216


>gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 231

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L          LT RE S L L  +G  ++EIA +L  SV  V  Y+     K    +R 
Sbjct: 159 LTTTPPPIKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRT 218

Query: 223 QAIAKAIRFGY 233
           + +  A++ G 
Sbjct: 219 ELVRFALKHGL 229


>gi|330502102|ref|YP_004378971.1| regulatory protein LuxR [Pseudomonas mendocina NK-01]
 gi|328916388|gb|AEB57219.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01]
          Length = 868

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                ++      L +  S+    L+ RE + LQL   GY+++EIA++L +S+HTV  + 
Sbjct: 782 QSLHQRLFEPAPRLDEPASAGTALLSSRELAVLQLIAQGYSNQEIADRLFISLHTVKTHA 841

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
               VKL    R QA+A A   G 
Sbjct: 842 RRINVKLGVQRRTQAVAMAKAQGL 865


>gi|320158185|ref|YP_004190563.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
 gi|319933497|gb|ADV88360.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
          Length = 212

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT+RE   + L   G ++++IA KL +  +TV  +L +   K+D  NR+QA+  A   
Sbjct: 146 KLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWAKEH 204


>gi|300088236|ref|YP_003758758.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527969|gb|ADJ26437.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 232

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+LA  G ++ +IAEKL LS+ TV A+L +   K+   +R +AI K  R G
Sbjct: 154 QLSPREIEILRLAARGLSNRDIAEKLELSMRTVKAHLSNIFNKMRCSSRTEAIVKGFREG 213

Query: 233 YI 234
           Y+
Sbjct: 214 YV 215


>gi|260428295|ref|ZP_05782274.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260422787|gb|EEX16038.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 220

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 1/111 (0%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCL 182
           L     G+V  T     L N V   + G  Y  +       +K  +  A  L+ RE   L
Sbjct: 109 LAAGAAGFVPKTLSAKSLVNAVRFMSMGEQYAPLEFLRTAEEKEGNPLADRLSRREMEVL 168

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +    G +++EIA  L +   TV  ++ +   K+ A NR QA   A   G 
Sbjct: 169 ERLTQGKSNKEIARDLDIREPTVKLHVKTLYRKIGAANRTQAAIFAKEAGL 219


>gi|254509824|ref|ZP_05121891.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
 gi|221533535|gb|EEE36523.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
          Length = 215

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  K  +A   LT RE + L     G +++E+A  L +SV TV  +  +   KL   + 
Sbjct: 136 SLEPKDGNAREALTGREQTILLELAQGKSNKEVALALDISVRTVETHRKNIKRKLGISST 195

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 196 AGLTRYALEHGVL 208


>gi|251798920|ref|YP_003013651.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546546|gb|ACT03565.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 225

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R  +   LT RE   L+L   G ++++IA+ L ++  TV  ++ S   KLD  +R QA  
Sbjct: 153 RDKSLEALTPRELEVLELLTKGLSNKDIAQTLIVAEKTVKTHVSSILSKLDLSDRTQAAL 212

Query: 227 KA 228
            A
Sbjct: 213 FA 214


>gi|27367915|ref|NP_763442.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
 gi|27359488|gb|AAO08432.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
          Length = 221

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT+RE   + L   G ++++IA KL +  +TV  +L +   K+D  NR+QA+  A   
Sbjct: 155 KLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWAKEH 213


>gi|29654353|ref|NP_820045.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|161830925|ref|YP_001596685.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331]
 gi|29541620|gb|AAO90559.1| response regulator [Coxiella burnetii RSA 493]
 gi|161762792|gb|ABX78434.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331]
          Length = 214

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 117 GIAFPVRLGF-HKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSS---A 170
           G   P+RL      G++  +S+   L      + +        I + L L K  ++    
Sbjct: 86  GDLLPMRLLEVGVRGFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSKTTTAATCP 145

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            + L++RE   L L   G  +E IA++L ++  TVN++      KL   N ++ I  A++
Sbjct: 146 FKKLSDREMEVLLLLAKGKKAEAIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQ 205

Query: 231 FGYI 234
           +G +
Sbjct: 206 YGLV 209


>gi|37676042|ref|NP_936438.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|37200582|dbj|BAC96408.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
          Length = 224

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT+RE   + L   G ++++IA KL +  +TV  +L +   K+D  NR+QA+  A   
Sbjct: 158 KLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWAKEH 216


>gi|145225590|ref|YP_001136268.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315445943|ref|YP_004078822.1| LuxR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145218076|gb|ABP47480.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315264246|gb|ADU00988.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. Spyr1]
          Length = 209

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   +R+G         +SE L+   E +   H     +         +   A + LT+R
Sbjct: 95  LFQAMRVGASGYLLKSISSEDLV---EQLESVHSGKTAIDPTMAARAVEWPGARQGLTQR 151

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E+  L L  +G ++  IA KL +   TV  +L S   KL   +R  A+A A+R G 
Sbjct: 152 ESEILALVVNGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDRTAAVATALREGI 207


>gi|260060932|ref|YP_003194012.1| LuxR family transcriptional regulator [Robiginitalea biformata
           HTCC2501]
 gi|88785064|gb|EAR16233.1| transcriptional regulator, LuxR family protein [Robiginitalea
           biformata HTCC2501]
          Length = 139

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LTERETSCLQLAGDGYTS 191
             E I  +    + +I   L+   +    +R           LT RE   L     G ++
Sbjct: 32  DPEWIFGSLAVLFLLIGMGLQRHARPKPPSREADQRKIRQLGLTPRECEVLLPLCKGLSN 91

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA++L +S  TV  ++ +  VKLD   R Q I KA     +
Sbjct: 92  REIADELHISESTVKTHVSNLLVKLDVRRRTQVIRKARALNLL 134


>gi|317125008|ref|YP_004099120.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589096|gb|ADU48393.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 228

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 2/101 (1%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                   ++  V         Q       +    ++  +++T RE   L+L  +G +++
Sbjct: 120 SVMRNETPISPGVAGRLLREIRQAGKP--RVTSPAATTEQSVTRRELEILRLVAEGLSNK 177

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           EIA++L ++  TV  ++ +A  KL   NRIQA A  IR G 
Sbjct: 178 EIAKRLVITEGTVKNHVHNALEKLHMDNRIQAAAYVIRQGL 218


>gi|322434963|ref|YP_004217175.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321162690|gb|ADW68395.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 209

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 41/88 (46%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           I    A  + +   L       +    ++ RE   LQ    G +++ +A  L +S HTV 
Sbjct: 120 IRVVHAGRRRMPPELAQQIAEYAMEDAVSPRELEVLQEVSRGKSNKIVAGDLNISEHTVK 179

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L S   KLDA +R  A+  AIR GYI
Sbjct: 180 NHLKSILSKLDASDRTDAVVIAIRRGYI 207


>gi|78185167|ref|YP_377602.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78169461|gb|ABB26558.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 227

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   L++RE+  L+    G +++E+AE L +S  T+ +++ +   KL   +R QA+  AI
Sbjct: 164 ALAGLSDRESEVLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAI 223

Query: 230 RFGY 233
           R G 
Sbjct: 224 RAGM 227


>gi|312961179|ref|ZP_07775684.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284837|gb|EFQ63413.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 217

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +++    E     ++ A +LT RE   L L  +G ++  I E+LG++  T  A++ 
Sbjct: 131 AVSARLLRRMTERQASGAAPAEHLTPRERQVLGLVANGMSNRAIGEQLGITTGTAKAHVE 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL A +R QA  + I  G +
Sbjct: 191 RVIGKLGAADRTQAAVRGIALGLV 214


>gi|182437835|ref|YP_001825554.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778470|ref|ZP_08237735.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466351|dbj|BAG20871.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658803|gb|EGE43649.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 214

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +  +  S    LT+RE   L   
Sbjct: 105 AGATGYLLKAERPEELFAAIRSAAQGRTTLSAPVASRVMARMRSPRPGLTDRERDILAQL 164

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + +IA  L +S  TV  +LG    KL    R  A++ A     +
Sbjct: 165 SQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213


>gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 232

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 40/99 (40%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           T+       E+  E      Q+      L    S    +LT RE S L L  +G  ++EI
Sbjct: 132 TATDSAKLEEIAQEIRELKQQLGQQQNTLTTTPSPIKIDLTPREQSVLDLVAEGLMNKEI 191

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L  SV  V  Y+     K    +R + +  A++ G 
Sbjct: 192 AARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230


>gi|118468546|ref|YP_885876.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis
           str. MC2 155]
 gi|118169833|gb|ABK70729.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis
           str. MC2 155]
          Length = 220

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L+  +    A + LT+RE+  L     G ++  IA KL +   TV  +L S   KL   +
Sbjct: 146 LQRDEFWPGARQGLTQRESEILSFVVAGLSNRGIANKLVIGEETVKTHLRSIYRKLGVSD 205

Query: 221 RIQAIAKAIRFGY 233
           R  A+A A+R G 
Sbjct: 206 RAGAVATALREGI 218


>gi|86740241|ref|YP_480641.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86567103|gb|ABD10912.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 357

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L   + ++     LT RE   L     G ++ E A +L +S  TV AYL S   KL
Sbjct: 279 LLRGLLAEETKTVGRLTLTPRELEVLAQVSLGLSNVETARRLTVSPETVKAYLRSIMRKL 338

Query: 217 DAVNRIQAIAKAIRFGYI 234
              NR  A+  A + G +
Sbjct: 339 GVRNRTAAVHAARQMGML 356


>gi|21222522|ref|NP_628301.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256786408|ref|ZP_05524839.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8052435|emb|CAB92376.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 222

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 7/138 (5%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +         +            V               L  
Sbjct: 84  FDLDEYAYSGLRAGASGFLVKDALPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPA 143

Query: 164 FKKRS-------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
              R             LTERET  L++ G G+T+ EIAE+L L+  TV  ++G    K 
Sbjct: 144 AGTRDHTPGSPDPRLSPLTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKT 203

Query: 217 DAVNRIQAIAKAIRFGYI 234
            + +R+QA+  A     +
Sbjct: 204 GSRDRVQAVILAYETKLV 221


>gi|46190453|ref|ZP_00121483.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
          Length = 64

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L     G +++EIA+KL +S+ TV  ++     K++A +R+QA+  A   
Sbjct: 2   DELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYEN 61

Query: 232 GYI 234
             +
Sbjct: 62  HLV 64


>gi|284034127|ref|YP_003384058.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283813420|gb|ADB35259.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 971

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----------SSAARNLTE 176
            +  +        + A   + +A+           EL  K            + A  LT 
Sbjct: 853 SEQAWSRLRLSDALRAAGRVADANEQAQLAAETARELGAKPLLEELGSAAEPAGAAALTA 912

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RET  L L  +G T+ ++A +L +S  TV+ ++ +   KL   +R +A A A R G +
Sbjct: 913 RETEVLALLAEGRTNRQLARELYISEKTVSVHVSNILAKLGVRSRTEAAAVARRDGLL 970


>gi|291300074|ref|YP_003511352.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569294|gb|ADD42259.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 213

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 13/161 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNGYVIFTSE 137
           +            S   L   +         +                    GY++  + 
Sbjct: 49  VDVMLTDLRMPAPSGAALIRLIAKRHPRVRVLVLTTYDTDADVLPAMEAGAVGYLLKDTP 108

Query: 138 FLMLANEVIIEAH---GACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
              L   V   A         V    +  L     + +  L+ RE   L L   G +++ 
Sbjct: 109 RQDLYRAVRSAADGETALSPSVAARLVDRLRSPGPARSSALSAREIEVLSLVAAGNSNKA 168

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L +S  TV  +L     KL   +R  A+A     G +
Sbjct: 169 IAAALFISEATVKTHLLHIYGKLGVNDRAAAVAAGYDSGLL 209


>gi|116621801|ref|YP_823957.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224963|gb|ABJ83672.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 225

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+L   G +++EIA+ L ++  TV  ++     +LD  +R QA+  A++ G
Sbjct: 162 ALSPREMDILRLIVRGLSNQEIADALNITRGTVKWHVNIILRRLDVNDRTQAVVVAVQRG 221

Query: 233 YI 234
            +
Sbjct: 222 IV 223


>gi|108798029|ref|YP_638226.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119867124|ref|YP_937076.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126433690|ref|YP_001069381.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|108768448|gb|ABG07170.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119693213|gb|ABL90286.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126233490|gb|ABN96890.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 219

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLEL--FKKRSSA 170
           +   +R+G         +S+ L+   E+          G   + +     L   +    A
Sbjct: 95  LFQALRVGASGYLLKSISSDELVRQLELAHRGQTAIDPGMAARAVDTAARLQRDEFWPGA 154

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            + LT+RE+  L     G ++  IA KL +   TV  +L S   KL   +R  A+A A+R
Sbjct: 155 RQGLTQRESEILSFVVTGLSNRGIANKLVIGEETVKTHLRSIYRKLGVGDRAGAVATALR 214

Query: 231 FGY 233
            G 
Sbjct: 215 EGI 217


>gi|42523311|ref|NP_968691.1| LuxR family transcriptional regulator [Bdellovibrio bacteriovorus
           HD100]
 gi|39575517|emb|CAE79684.1| putative transcriptional regulator, LuxR family [Bdellovibrio
           bacteriovorus HD100]
          Length = 129

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-R 230
           + L+ RE    +L   G +++E+A +L ++  TV  +L +   K++  +R Q I   +  
Sbjct: 9   KGLSNREAEVAELVSKGLSNKEVANQLFVTEKTVKFHLTNIYKKMNVKSRAQLIVWCLPH 68

Query: 231 FGYI 234
            G++
Sbjct: 69  LGFV 72


>gi|320106955|ref|YP_004182545.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319925476|gb|ADV82551.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 208

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ERE   L+    G +++ +A+KL +S  TV  ++ S   KL A +R  A+  A++
Sbjct: 143 ADALSEREIQVLREVSAGSSNKSVADKLFISEDTVKGHMKSILAKLQANDRTHAVMIAVK 202

Query: 231 FGYI 234
            G+I
Sbjct: 203 RGFI 206


>gi|239945308|ref|ZP_04697245.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991767|ref|ZP_04712431.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448770|ref|ZP_06588160.1| two component system DNA binding response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291351717|gb|EFE78621.1| two component system DNA binding response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 217

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 50/109 (45%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    LA  V   A G      +    L  +  + A  LT RE   LQL 
Sbjct: 107 AGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQLV 166

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G ++ +I+++L LS  TV ++L     KL   +R  A+A A     I
Sbjct: 167 GEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 215


>gi|239944642|ref|ZP_04696579.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991106|ref|ZP_04711770.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448106|ref|ZP_06587496.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351053|gb|EFE77957.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
            FP  L   +            +   +I E              +      +   LT RE
Sbjct: 109 TFPELLHAVRVVAGGHALLAPEITGRLIAEFAR---------QRVSAPPKRSIEGLTARE 159

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L   G ++ +IA++L ++ HTV  ++     K+   +R QA+  A   G +
Sbjct: 160 AEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLV 215


>gi|196228675|ref|ZP_03127541.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226956|gb|EDY21460.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 217

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   +QL  +G +++E+A+ LG+SV TV  +  +   KL   +    +  AIR  
Sbjct: 154 RLTDREREIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKLKFKSFSDLVRYAIRNH 213

Query: 233 YI 234
            I
Sbjct: 214 II 215


>gi|149922133|ref|ZP_01910573.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149817070|gb|EDM76552.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 247

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L+L  DG ++  I E+LG+S HTV  ++ +   KLDA +R QA+ +
Sbjct: 178 APENNLLTPREREVLELLADGLSNRNIGERLGISAHTVKFHVDALLDKLDARSRTQAVVQ 237

Query: 228 AIRFGYI 234
           AIR G +
Sbjct: 238 AIRRGLL 244


>gi|56477414|ref|YP_159003.1| transcriptional regulator NarL [Aromatoleum aromaticum EbN1]
 gi|56313457|emb|CAI08102.1| Nitrate/nitrite TWO-component response regulator NARL [Aromatoleum
           aromaticum EbN1]
          Length = 220

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY--------- 154
           +    L    +   V          +           +  E ++EA  A           
Sbjct: 76  VRQADLDTRVVMVTVSDAAEDLVAALRAGADGYLLKDMEPEQMVEALQAAAAGRIVVSDA 135

Query: 155 --QVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              ++   L   K+  S     LTE+E   L+    G +++ IA +LG++  TV  ++  
Sbjct: 136 LTHLMAAALRQEKRPDSVTDAGLTEQEQRILERIAAGLSNKLIARELGIAEGTVKVHVKH 195

Query: 212 ATVKLDAVNRIQAIAKAI 229
              KL+  +R++A   A+
Sbjct: 196 VLRKLNFRSRVEAAVWAV 213


>gi|315091877|gb|EFT63853.1| putative nitrate/nitrite response regulator protein NarL
           [Propionibacterium acnes HL110PA4]
          Length = 210

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + +   A G           L  +  S   +LT RE   L+ +
Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVAPRLMVRMRSPRTSLTAREFDVLEAS 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +IAE L +S  TV  +L     KL   +R  A+AKA   G+I
Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|307323931|ref|ZP_07603140.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890380|gb|EFN21357.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 39/109 (35%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +  +  S    L+ERE   L+  
Sbjct: 132 AGATGYLLKAERPEELFAAIRNAASGRTALSAPVADRVLARMRSPRPGLSERERDILRQL 191

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 192 ARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVATERRLL 240


>gi|326775192|ref|ZP_08234457.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326655525|gb|EGE40371.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 230

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177
               GYV+ +     L                GA   +I +FL          AR +TER
Sbjct: 112 AGAAGYVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNFLDRAKDGEDLPARAITER 171

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  +G++S+EIAE L +SV TV  +  +   KL   +R++    AIR G I
Sbjct: 172 EEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 228


>gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 231

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L    S     LT RE S L L  +G  ++EIA +L  SV  V  Y+     K    +R
Sbjct: 158 HLVTTPSPIKIELTPREQSVLDLVAEGLMNKEIASRLNTSVRNVEKYVSRLFSKTGTNSR 217

Query: 222 IQAIAKAIRFGY 233
            + +  A++ G 
Sbjct: 218 TELVRFALKHGL 229


>gi|126435625|ref|YP_001071316.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|126235425|gb|ABN98825.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 218

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 9/117 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRS--SAARNLTE 176
               GY++ ++    L+  V   A G           V+ ++  + ++     +A  LTE
Sbjct: 100 AGATGYLVKSASKAELSAAVRATADGRAVFTPGLAGLVLGEYRRIAQRPDTGDSAPTLTE 159

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RET  L+    G T+++IA +L LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 160 RETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216


>gi|15802746|ref|NP_288773.1| transcriptional regulator NarP [Escherichia coli O157:H7 EDL933]
 gi|15832336|ref|NP_311109.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749599|ref|ZP_02774621.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4113]
 gi|168754943|ref|ZP_02779950.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4401]
 gi|168764687|ref|ZP_02789694.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4501]
 gi|168767816|ref|ZP_02792823.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4486]
 gi|168773087|ref|ZP_02798094.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4196]
 gi|168780045|ref|ZP_02805052.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4076]
 gi|168789011|ref|ZP_02814018.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC869]
 gi|168802408|ref|ZP_02827415.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC508]
 gi|195935573|ref|ZP_03080955.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807826|ref|ZP_03250163.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4206]
 gi|208812712|ref|ZP_03254041.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4045]
 gi|208820974|ref|ZP_03261294.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4042]
 gi|209398167|ref|YP_002271605.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4115]
 gi|217326666|ref|ZP_03442749.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. TW14588]
 gi|254794092|ref|YP_003078929.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223349|ref|ZP_05937630.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259101|ref|ZP_05951634.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283444|ref|YP_003500262.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7
           str. CB9615]
 gi|12516525|gb|AAG57328.1|AE005452_1 nitrate/nitrite response regulator (sensor NarQ) [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362551|dbj|BAB36505.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. Sakai]
 gi|187771336|gb|EDU35180.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4196]
 gi|188016073|gb|EDU54195.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4113]
 gi|189002090|gb|EDU71076.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4076]
 gi|189357613|gb|EDU76032.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4401]
 gi|189362901|gb|EDU81320.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4486]
 gi|189365348|gb|EDU83764.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4501]
 gi|189371341|gb|EDU89757.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC869]
 gi|189375588|gb|EDU94004.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC508]
 gi|208727627|gb|EDZ77228.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4206]
 gi|208733989|gb|EDZ82676.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4045]
 gi|208741097|gb|EDZ88779.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4042]
 gi|209159567|gb|ACI37000.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4115]
 gi|209765848|gb|ACI81236.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765850|gb|ACI81237.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765852|gb|ACI81238.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765854|gb|ACI81239.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765856|gb|ACI81240.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|217319033|gb|EEC27458.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. TW14588]
 gi|254593492|gb|ACT72853.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763317|gb|ADD57278.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7
           str. CB9615]
 gi|320192180|gb|EFW66825.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. EC1212]
 gi|320641261|gb|EFX10739.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           G5101]
 gi|320646534|gb|EFX15450.1| transcriptional regulator NarP [Escherichia coli O157:H- str.
           493-89]
 gi|320651905|gb|EFX20280.1| transcriptional regulator NarP [Escherichia coli O157:H- str. H
           2687]
 gi|320657630|gb|EFX25428.1| transcriptional regulator NarP [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663086|gb|EFX30399.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667986|gb|EFX34889.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326339547|gb|EGD63358.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1125]
 gi|326344008|gb|EGD67769.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1044]
          Length = 215

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 71  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SERVNQYLHEREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 191 NLLRKLNVRSRVAATIL 207


>gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 228

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 14/96 (14%)

Query: 152 ACYQVITDFLELFK-------KRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEK 197
             +++  + + L +       K              LT  E         GYT+++I+++
Sbjct: 121 RSHRIHAEIVRLLQNSGVEQVKIPPPTVTPESQPLPLTPAEERVFWEVIQGYTNKQISDR 180

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +S  TV A+L S   KL   NR Q +  A+  GY
Sbjct: 181 LFISPRTVQAHLSSIFSKLQLENRSQLVRFALEGGY 216


>gi|297623791|ref|YP_003705225.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164971|gb|ADI14682.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 503

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            EV+ +      QV+    ++   R   + +  LTERE   L     G ++E IA +LGL
Sbjct: 408 QEVMSDTAWFSTQVMERLAQIRAGRPKAAPSVALTERERQVLAQLAQGKSNEAIAAELGL 467

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  TV  Y+     K+   +R +A+  A   G 
Sbjct: 468 ARQTVRNYISVLYDKIGVHSRAEAVVWARERGM 500


>gi|223934665|ref|ZP_03626585.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896620|gb|EEF63061.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 11/151 (7%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNGYVIFTSEFLMLAN 143
                ++S  Q ++ +         +      G             GYV+ +S    L  
Sbjct: 59  DLRMPVKSGVQATLEIRNRFATACVLMLTAFDGDEDIHKALQAGAQGYVLKSSTGEKLIP 118

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
            +   A G  +        L  + S     L+ RE   L     G  ++EIA+ L ++ H
Sbjct: 119 ALRAVAAGQRWIPKEVANRLALRNSF--EQLSPREVQVLSELARGLANKEIADVLNITEH 176

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T   +L S   KL   +R +A+  A++ G I
Sbjct: 177 TTKDHLKSILAKLRVADRTEAVTVALQRGII 207


>gi|160883554|ref|ZP_02064557.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483]
 gi|156110967|gb|EDO12712.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483]
          Length = 275

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 37/68 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
              ++ NLT RE   L+L   G  S+EIA+KL +S+HTVN +  +   KL   N I+AI 
Sbjct: 207 IMPSSLNLTNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIR 266

Query: 227 KAIRFGYI 234
                G +
Sbjct: 267 LGQETGLL 274


>gi|83643319|ref|YP_431754.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631362|gb|ABC27329.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 207

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 37/83 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                         + R  ++ +LT RE S L+   +G +++ IAE+L +SV TV  +  
Sbjct: 124 YISSGASAALFSQPQLRGESSASLTHREASVLKKVAEGKSNKAIAEELAISVRTVETHRQ 183

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +  +    AI+ G 
Sbjct: 184 NIKAKLGLSSTAELTKYAIKHGL 206


>gi|146278542|ref|YP_001168701.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556783|gb|ABP71396.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 203

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 21/214 (9%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  ++    A  +    I  A            L +Y  D  +          D  +   
Sbjct: 11  LSQLRRVAPAGYYMGLHIRFASPL-------VTLQSYREDWIEYYTEKGYLLYDPSIRWG 63

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
                   W    +           V          G++              F      
Sbjct: 64  MVESGTRRWSDFADSDPRG-----VVAEAAQFGLRFGVSCS-WGAVSGRSIGSFARSDRE 117

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
             +  +        +V    L            LT+ +   L+  G+G      A+KLG+
Sbjct: 118 FTDREVELVFELFQRVHELTL--------PPDELTQPQIDALRCIGNGDRHAAAAQKLGI 169

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S   + A +  A  +L A    +AI +A  +G I
Sbjct: 170 SESALKARIAGARQRLGARTTAEAIQRAKDYGLI 203


>gi|297589527|ref|ZP_06948168.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|283471613|emb|CAQ50824.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|297578038|gb|EFH96751.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|298695655|gb|ADI98877.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|312437187|gb|ADQ76258.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|323439615|gb|EGA97334.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323442719|gb|EGB00346.1| two-component response regulator [Staphylococcus aureus O46]
          Length = 200

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY ++EIAEKL +SV TV A+      KL   ++ + +  
Sbjct: 132 SDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 191

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 192 ALKKKLL 198


>gi|49484607|ref|YP_041831.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|82751986|ref|YP_417727.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|257423874|ref|ZP_05600303.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257426557|ref|ZP_05602959.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429193|ref|ZP_05605580.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257431839|ref|ZP_05608202.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257434799|ref|ZP_05610850.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|258425065|ref|ZP_05687936.1| two-component system response regulator [Staphylococcus aureus
           A9635]
 gi|282902306|ref|ZP_06310199.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906734|ref|ZP_06314582.1| two-component system NarL family response regulator NreC
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909710|ref|ZP_06317519.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911956|ref|ZP_06319752.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282915251|ref|ZP_06323028.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917742|ref|ZP_06325492.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920975|ref|ZP_06328693.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925881|ref|ZP_06333529.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C101]
 gi|283767476|ref|ZP_06340391.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus H19]
 gi|283959174|ref|ZP_06376615.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497647|ref|ZP_06665501.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511227|ref|ZP_06669923.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus M809]
 gi|293549835|ref|ZP_06672507.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295428978|ref|ZP_06821600.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81696432|sp|Q6GE42|NREC_STAAR RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|123741052|sp|Q2YZ42|NREC_STAAB RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|49242736|emb|CAG41461.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82657517|emb|CAI81959.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|257272892|gb|EEV04994.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257276188|gb|EEV07639.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279674|gb|EEV10261.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282718|gb|EEV12850.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285395|gb|EEV15511.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257844899|gb|EEV68942.1| two-component system response regulator [Staphylococcus aureus
           A9635]
 gi|282312710|gb|EFB43114.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315390|gb|EFB45774.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C427]
 gi|282318027|gb|EFB48387.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus D139]
 gi|282320972|gb|EFB51306.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282323652|gb|EFB53968.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326284|gb|EFB56588.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282329633|gb|EFB59154.1| two-component system NarL family response regulator NreC
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596765|gb|EFC01724.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|283461355|gb|EFC08439.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus H19]
 gi|283788766|gb|EFC27593.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290918882|gb|EFD95958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096578|gb|EFE26836.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465853|gb|EFF08383.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus M809]
 gi|295126737|gb|EFG56381.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|302334020|gb|ADL24213.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|315194884|gb|EFU25272.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 217

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY ++EIAEKL +SV TV A+      KL   ++ + +  
Sbjct: 149 SDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 208

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 209 ALKKKLL 215


>gi|256783882|ref|ZP_05522313.1| two-component regulator [Streptomyces lividans TK24]
 gi|289767766|ref|ZP_06527144.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289697965|gb|EFD65394.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                V     E     +      LT RE   L+L   G ++ EIA  L +S HTV  ++
Sbjct: 133 LVADIVRRRREEAAADVTPQRLEALTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHV 192

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL   +R+QA+  A   G +
Sbjct: 193 SNVLGKLGLRDRVQAVICAYETGLV 217


>gi|261418694|ref|YP_003252376.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765509|ref|YP_004131010.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375151|gb|ACX77894.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317110375|gb|ADU92867.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 550

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  LT RE   L+L   G ++ EI+E+L +SVHTV  ++ +   K+   +R Q IA   +
Sbjct: 483 SEQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQ 542

Query: 231 F 231
            
Sbjct: 543 L 543


>gi|116254846|ref|YP_770682.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|19338425|emb|CAD19127.2| two-component response regulator [Rhizobium leguminosarum bv.
           viciae]
 gi|115259494|emb|CAK10632.1| two-component response transcriptional regulator of mctP [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 214

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 5/136 (3%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVIT 158
              ++ +           I+  V  G         +++ ++ A E +          V  
Sbjct: 79  PQARVVM--LSMHDSREYISSSVMHGAAGYILKDVSTDEIVSAIETVAGGGTYFSSGVFD 136

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             +   ++    +  LT RE   L L   G +++EIAE LG++  T   +  +   KL  
Sbjct: 137 ALM--GERVEEGSDPLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGI 194

Query: 219 VNRIQAIAKAIRFGYI 234
                 I  A+  G +
Sbjct: 195 TTTAGLIRYALDHGIV 210


>gi|331696989|ref|YP_004333228.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951678|gb|AEA25375.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 237

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYT 190
            E L    +       A    + + L   +             LT RE   L L  +G +
Sbjct: 121 REALRRVLDDRAAIDPAVQHHLLEALAGGRPEPVPVAPQRPAGLTAREAEVLTLVAEGLS 180

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA +L +S  TV +++     K+DA +R QA+A A R G +
Sbjct: 181 NAEIARRLVVSEGTVKSHMNHLLAKIDARDRAQAVAFAYRNGLV 224


>gi|323700520|ref|ZP_08112432.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. ND132]
 gi|323460452|gb|EGB16317.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans ND132]
          Length = 216

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
             ++         R     +L+ RE    +L  DG T +E A +L +S  TV  +  +  
Sbjct: 134 AALLRQLSPERSGREDLFDHLSPRELEVFRLLADGLTVKEAAAELHISPKTVETHKYNLM 193

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL+          AIR G I
Sbjct: 194 EKLEVGTIPDLTKLAIRHGLI 214


>gi|228477748|ref|ZP_04062377.1| DNA-binding response regulator [Streptococcus salivarius SK126]
 gi|228250637|gb|EEK09848.1| DNA-binding response regulator [Streptococcus salivarius SK126]
          Length = 200

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +  +     L++RE   L +   G T++EIAE L LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+  A    ++
Sbjct: 187 TEAVRIAKEKDWL 199


>gi|83594559|ref|YP_428311.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577473|gb|ABC24024.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 224

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT R+   L+L G G +++EIA  L LS  TV  ++ +    L   NR  A+  A R G
Sbjct: 162 RLTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLG 221

Query: 233 Y 233
            
Sbjct: 222 L 222


>gi|56418899|ref|YP_146217.1| hypothetical protein GK0364 [Geobacillus kaustophilus HTA426]
 gi|56378741|dbj|BAD74649.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 549

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 9/165 (5%)

Query: 76  FLFHFNSGLLPIIWQSIQEETV--IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                    + + ++              +  V     +   + +  P  +G  + G + 
Sbjct: 378 VHEGAMDVEMAVRYRDDVCRRYGCHGEKAKSEVPALLDVEGKSVMEVPFFVGDGRYGVLA 437

Query: 134 -FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAG 186
               +        +     A    +    +              +  LT RE   L+L  
Sbjct: 438 VHIKKGREAKEAEVYMTALAAIGAMMISGKAHGGNDGTVNIDMLSEQLTAREMDVLELLI 497

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            G ++ EI+E+L +SVHTV  ++ +   K+   +R Q IA   + 
Sbjct: 498 QGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 542


>gi|15614660|ref|NP_242963.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174716|dbj|BAB05816.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 210

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+   L+  +        LT RE + L+  G+G  ++E+AE+LGLSV TV      
Sbjct: 129 VAAKVMPVLLQHEEAI-PIDPTLTPREIAILKCIGEGLNNKEVAERLGLSVGTVKNQTSQ 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R Q    AIR   +
Sbjct: 188 ILDKLALRDRTQLAIYAIRHRLV 210


>gi|88808256|ref|ZP_01123766.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88787244|gb|EAR18401.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 235

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                    L+ RE         G  +  IA  LGLSV TV +++G+A  KL A +R Q 
Sbjct: 162 PDLPPLVEELSPRELEVAAGVARGLKNNAIASLLGLSVETVKSHVGNAMDKLGARDRTQM 221

Query: 225 IAKAIRFGYI 234
              A+ +G I
Sbjct: 222 AVMALLYGLI 231


>gi|312140819|ref|YP_004008155.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311890158|emb|CBH49476.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 224

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 3/123 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +G         + +  +   A                     
Sbjct: 104 RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPPLDPE 160

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE+L +SV TV  +  +   K    NR      A R
Sbjct: 161 LDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHR 220

Query: 231 FGY 233
              
Sbjct: 221 RRI 223


>gi|297155229|gb|ADI04941.1| two-component regulator [Streptomyces bingchenggensis BCW-1]
          Length = 181

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G+T+ EIAE+L L+  TV +++     K+ A +R+Q +  A   G
Sbjct: 117 RLTEREREVLTGVATGWTNTEIAERLCLAESTVKSHVSRILTKIGARDRVQVVIFAYDVG 176

Query: 233 YI 234
            +
Sbjct: 177 LV 178


>gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
 gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 246

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 37/106 (34%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +       +E        +         ++     +    S    +LT RE S L L   
Sbjct: 139 RRAATRQEAEDGTPDITALAGQIARIENMLKGKTGINLSPSPIKIDLTPREQSVLDLVAQ 198

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G  ++EIA +L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 199 GLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 244


>gi|254485770|ref|ZP_05098975.1| two component transcriptional regulator, LuxR family [Roseobacter
           sp. GAI101]
 gi|214042639|gb|EEB83277.1| two component transcriptional regulator, LuxR family [Roseobacter
           sp. GAI101]
          Length = 204

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                  A  L+ RE   L+   +G  ++EIA  L +S  TV  ++ +   K+ A NR Q
Sbjct: 134 DTPTHPLAEKLSSRELQVLKGLTEGKANKEIARDLDISEPTVKLHMKTLYRKVGAANRTQ 193

Query: 224 AIAKAIRFGY 233
           A   A   G 
Sbjct: 194 AALIAREAGL 203


>gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 232

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 40/99 (40%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           T+   +   E+  E      Q+      L         +LT RE S L L  +G  ++EI
Sbjct: 132 TATDSVKLEEIAQEIRELKQQLGQQQNTLITTPPPIKIDLTPREQSVLDLVAEGLMNKEI 191

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L  SV  V  Y+     K    +R + +  A++ G 
Sbjct: 192 AARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230


>gi|53804396|ref|YP_113723.1| LuxR family transcriptional regulator [Methylococcus capsulatus
           str. Bath]
 gi|53758157|gb|AAU92448.1| transcriptional regulator, LuxR family [Methylococcus capsulatus
           str. Bath]
          Length = 255

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 64/225 (28%), Gaps = 11/225 (4%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICE--LHNYD---LDSGDIPNIL 68
           L      L  I    +A  F    ++   D     ++     LH +        +    L
Sbjct: 27  LDHAMASLCGIIGAQQACWFGAVRLDCRDDPIDGWRVCAIRYLHPHPERDAAYAEHRRRL 86

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIES-SGQLSVRLEGGLLPFA--GIAFPVRLG 125
                D  +                E        G+    L           +A PV  G
Sbjct: 87  ERGDIDPSIVANLRHAGRFRVSIQHEIVPPGWYDGEFYRSLFKPFGIRDVCYMATPVNSG 146

Query: 126 FHKNGYVIFTSEFLML---ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
                     S    L   A   ++E  G   +     L L      A++ LT  E   L
Sbjct: 147 LESWFGFERVSPEAPLFGEAERALLERAGRALKWFHRQLALHHGLMIASQPLTPAERRLL 206

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                G +  EIAE+LGL+ +TV+ Y      K     R   +A 
Sbjct: 207 SALLGGASEAEIAERLGLTPNTVHTYATRIYRKFGVKGRTGLVAL 251


>gi|332306797|ref|YP_004434648.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174126|gb|AEE23380.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 215

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K     ++ LT RE   L     G +S+EIA  L +S  TV A+  +   KL+  +  
Sbjct: 142 IDKPARDTSQKLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLA 201

Query: 223 QAIAKAIRFGYI 234
           + I  A+  G +
Sbjct: 202 ELICYAVDHGLV 213


>gi|331699089|ref|YP_004335328.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953778|gb|AEA27475.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 227

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 21/181 (11%)

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D+ +      L P     +          ++  R+         +A  V         V
Sbjct: 49  VDEAVAAIRH-LRP-DVVLLDVHMPDGGGAEVLRRIRPECPDVVFLALSVSDAAEDVIAV 106

Query: 133 IFTSEFL----MLANEVIIEAHGACY--------QVITDFLELFKKRSSAARN------- 173
           I           ++   + +A    +        ++    L++F  R  AA         
Sbjct: 107 IRAGARGYVTKTISGRDLADAVRRVHGGDAVFSPRLAGFVLDVFSDRPGAAPPGDPELDL 166

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L   GY  +EIA +L +SV TV  ++ S   K    NR +    A     
Sbjct: 167 LTRRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRL 226

Query: 234 I 234
           +
Sbjct: 227 V 227


>gi|319648461|ref|ZP_08002677.1| YvfU protein [Bacillus sp. BT1B_CT2]
 gi|317389540|gb|EFV70351.1| YvfU protein [Bacillus sp. BT1B_CT2]
          Length = 197

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 144 EVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           + + +A   C +    F  EL          LTERE   L+LA  G T++EI+E+L LS 
Sbjct: 106 DDLADAIRKCTEGKRTFSPELTFNAVRETNPLTEREQDILRLAYIGKTTKEISEELFLSS 165

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+     KLDA NR++A   A   G+I
Sbjct: 166 GTVRNYISEIMQKLDAKNRMEAARIAEGKGWI 197


>gi|269836233|ref|YP_003318461.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785496|gb|ACZ37639.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 223

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                ++ ++  L  K   +  + LT+RE + L+L  +GY + +IAE+L L+  TV   L
Sbjct: 132 ALAPALMREYQRLLTKTPTNTRQQLTQRELTLLRLLANGYNNRQIAEQLQLAESTVKNNL 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   K+   +R QA+  AI  G +
Sbjct: 192 SALFQKIGVRDRTQAVLFAISQGLV 216


>gi|228919844|ref|ZP_04083201.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839798|gb|EEM85082.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 207

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLTE+E   L+    G  ++EIA  +G++  TV AYL +   KL   +R +A+A +I   
Sbjct: 144 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 203

Query: 233 YI 234
            I
Sbjct: 204 LI 205


>gi|229028798|ref|ZP_04184901.1| Sensory transduction protein ydfI [Bacillus cereus AH1271]
 gi|228732508|gb|EEL83387.1| Sensory transduction protein ydfI [Bacillus cereus AH1271]
          Length = 207

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLTE+E   L+    G  ++EIA  +G++  TV AYL +   KL   +R +A+A +I   
Sbjct: 144 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 203

Query: 233 YI 234
            I
Sbjct: 204 LI 205


>gi|229154684|ref|ZP_04282799.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342]
 gi|228628632|gb|EEK85344.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342]
          Length = 207

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLTE+E   L+    G  ++EIA  +G++  TV AYL +   KL   +R +A+A +I   
Sbjct: 144 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 203

Query: 233 YI 234
            I
Sbjct: 204 LI 205


>gi|118476625|ref|YP_893776.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415850|gb|ABK84269.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 219

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLTE+E   L+    G  ++EIA  +G++  TV AYL +   KL   +R +A+A +I   
Sbjct: 156 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERK 215

Query: 233 YI 234
            I
Sbjct: 216 LI 217


>gi|116749099|ref|YP_845786.1| two component LuxR family transcriptional regulator
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698163|gb|ABK17351.1| two component transcriptional regulator, LuxR family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 218

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +VI  +LE  K  K S++   LT+RE   L++  +GY +++IA+ L +S  TV  + 
Sbjct: 132 ISEKVIEGYLEGRKTIKSSTSWDTLTQREKEILKMIAEGYKNKDIADYLCISAKTVEKHR 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KLD  +     A A+  G I
Sbjct: 192 ANLMKKLDLHSASSLTAFAMEKGLI 216


>gi|322516517|ref|ZP_08069435.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322124986|gb|EFX96400.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 200

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +  +     L++RE   L +   G T++EIAE L LS  TV  Y+ +   KL+A NR
Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLNAGNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+  A    ++
Sbjct: 187 TEAVRIAKEKDWL 199


>gi|261338216|ref|ZP_05966100.1| two-component system response regulator [Bifidobacterium gallicum
           DSM 20093]
 gi|270276862|gb|EFA22716.1| two-component system response regulator [Bifidobacterium gallicum
           DSM 20093]
          Length = 230

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 23/142 (16%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVIIEAHG-------ACYQVITDFLEL 163
           A +A  V       G VI           + A +++   H           ++    L  
Sbjct: 89  AFLALSVSDSAQDVGAVIRAGARGYVTKTINATDLVAAIHQVSEGYAVFSPKLAGFVLSA 148

Query: 164 FKKRSSAA-----------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           F+   +A              L+ RE   ++L   GYT  E+A +L +SV TV  ++ + 
Sbjct: 149 FQGAPAAGADNDVNADEELDRLSSREQEVMRLIARGYTYREVAAELFISVKTVETHMSAV 208

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   NR +    A     I
Sbjct: 209 LRKLQLSNRSELTRWATVRRII 230


>gi|209546605|ref|YP_002278523.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537849|gb|ACI57783.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166
           +         I+  V  G         +++ ++ A E + +        V    +   ++
Sbjct: 85  MLSMHDSREYISSSVMHGAAGYVLKDVSTDEIVAAIETVADGGTYFSSGVFDALM--GER 142

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               +  LT RE   L L   G ++ EIAE LG+S  T   +  +   KL        I 
Sbjct: 143 AEEGSDPLTPREHDILGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLIR 202

Query: 227 KAIRFGY 233
            A+  G 
Sbjct: 203 YALDHGI 209


>gi|317492389|ref|ZP_07950818.1| luxR family bacterial regulatory protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919728|gb|EFV41058.1| luxR family bacterial regulatory protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 215

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S  A  LT+RE   L     G ++ EIA+ L +S +TV  +L +   K+   NR QA++ 
Sbjct: 149 SPEATGLTQREKEILNKLRAGASNTEIAKLLFISENTVKTHLYNLFKKISVKNRTQAVSW 208

Query: 228 A 228
           A
Sbjct: 209 A 209


>gi|317121636|ref|YP_004101639.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315591616|gb|ADU50912.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 222

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            AR L++RE   L     G ++ ++A +L +S  TV  +L     KL   +R QA+  A+
Sbjct: 151 RARLLSQRELEVLSRIARGKSTAQVARELYISPKTVRNHLSHIMQKLGVRDRTQAVLFAL 210

Query: 230 RFGYI 234
           R G I
Sbjct: 211 RVGLI 215


>gi|311743852|ref|ZP_07717658.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
 gi|311312982|gb|EFQ82893.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
          Length = 218

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 157 ITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +   L   ++ +  A     LTERE   L     G T+ EIA++L +++ TV  ++ +  
Sbjct: 136 LLTTLAGLERATPPAQPIEPLTEREEEVLLTVARGRTNAEIADELHITLSTVKTHVAALM 195

Query: 214 VKLDAVNRIQAIAKAIRFG 232
            KL A NR++    A   G
Sbjct: 196 NKLGARNRVEVAMWAYETG 214


>gi|254820486|ref|ZP_05225487.1| NarL_1 [Mycobacterium intracellulare ATCC 13950]
          Length = 217

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    L    +                    G+V+  S  
Sbjct: 57  DVALLDYRMPGMDGAQVAAAVRTQGLATRVLLISAHDESAIVYQALQQGAAGFVLKDSTR 116

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++   +A  L+ RE   L     G +   I
Sbjct: 117 GEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPSAPVLSAREREVLNRIARGQSIPTI 176

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL   +R  A+A+A+R G +
Sbjct: 177 AGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 216


>gi|153941243|ref|YP_001390894.1| LuxR family transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|152937139|gb|ABS42637.1| transcriptional regulator, LuxR family [Clostridium botulinum F
           str. Langeland]
          Length = 865

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 41/72 (56%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            I + +++ +        LTERE   +++  +G ++++I ++L +S+ TV  ++ +   K
Sbjct: 785 FIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNISLATVKTHMINIYSK 844

Query: 216 LDAVNRIQAIAK 227
           L   NR+QA+ K
Sbjct: 845 LQVSNRVQAVEK 856


>gi|149926855|ref|ZP_01915114.1| two-component response regulator [Limnobacter sp. MED105]
 gi|149824407|gb|EDM83625.1| two-component response regulator [Limnobacter sp. MED105]
          Length = 205

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +I  H      +    +L ++ +     LT RE   L+    G  +++IA+ L +S+ T
Sbjct: 112 DLIHQHMRHAHELAQTAKLDEQINKLYSKLTTRELQVLERIVSGRLNKQIADDLNISIKT 171

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIR 230
           V A+  +   KL        +  A+R
Sbjct: 172 VEAHRANIMDKLQVTTVADLLKIALR 197


>gi|153948784|ref|YP_001400250.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960279|gb|ABS47740.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 31758]
          Length = 209

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166
           I   V         +I              E+++E      +        +  +L    +
Sbjct: 82  IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 141

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL+  +R+ A  
Sbjct: 142 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 201

Query: 227 KAIRF 231
             +  
Sbjct: 202 MYLEN 206


>gi|311064838|ref|YP_003971564.1| two-component system response regulator [Bifidobacterium bifidum
           PRL2010]
 gi|313140925|ref|ZP_07803118.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|310867158|gb|ADP36527.1| Two-component system response regulator [Bifidobacterium bifidum
           PRL2010]
 gi|313133435|gb|EFR51052.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 238

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + R      L+ RE   ++L   GYT +E+A +L +S+ TV  ++ +   KL   NR +
Sbjct: 168 ARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRTE 227

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 228 LTRWAADRRIV 238


>gi|298247701|ref|ZP_06971506.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550360|gb|EFH84226.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 231

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEI 194
             A   ++       +V        K  + +        LTERE   LQ    G  S+EI
Sbjct: 124 AAARGEMLLQPEMLARVFALTSSQAKDAAPSFGNVEGMELTEREREILQGVARGERSKEI 183

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +LG+S+ TV ++L S   KL   +R  A+A AI  G +
Sbjct: 184 AVRLGISIRTVGSHLASIYTKLGVDSRASAVALAIERGLL 223


>gi|288936970|ref|YP_003441029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Klebsiella variicola At-22]
 gi|288891679|gb|ADC59997.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Klebsiella variicola At-22]
          Length = 921

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  +   D              L+ERE   LQL  +G  ++EIA  L +S  TV  ++ 
Sbjct: 837 WADKRAPADGTPFNSGSPDIHGELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIK 896

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R QA+++A+    +
Sbjct: 897 NIYAKLKVNSRTQAMSRALEMKLL 920


>gi|269216845|ref|ZP_06160699.1| putative HTH-type transcriptional regulator MalT [Slackia exigua
           ATCC 700122]
 gi|269129652|gb|EEZ60736.1| putative HTH-type transcriptional regulator MalT [Slackia exigua
           ATCC 700122]
          Length = 787

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           +E + +  E +             + +     S     LT+ E   L L     ++ EI 
Sbjct: 689 AEEMDVDEEQLARLVKGARAQALWYPDFMSPPSGLTEPLTKTEIQVLHLICQDKSNVEIG 748

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E LG+ + TV  ++     KL    R+QA  +A R   +
Sbjct: 749 ELLGIKLSTVKTHVSHILAKLGVSRRVQAAREARRLHLV 787


>gi|219667253|ref|YP_002457688.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537513|gb|ACL19252.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 217

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGY 189
            + ++   +   E+ I    A   V    +   +  K S   + L+ERE   L+    G+
Sbjct: 113 ELLSAIRTVARGEMFIYPTMAAEFVYRHLVSPREPEKESKKLKQLSERELEVLRNLALGH 172

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+++IA+ L +SV TV  Y      KL+   R + +  A+  G I
Sbjct: 173 TNQDIADLLHVSVKTVETYKARVMEKLEMHKRAELVRYAMENGII 217


>gi|227355895|ref|ZP_03840287.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906]
 gi|227163883|gb|EEI48785.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906]
          Length = 201

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
            +  +   SG   +R        + +    +    +     +       L  E  ++   
Sbjct: 49  MDLHLQGRSGIDIIRSLRRCGLTSYVLVLSISDSRNDVYAALDAGANGYLLKECELDMLL 108

Query: 152 ACYQV-----------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
              +            +  +++L +  S     LT+RE   LQ    G  +++IAE L +
Sbjct: 109 LSLRKAVVGRPVYSEKVWQYIQLRQNYSDPLSALTKRELDVLQEVAVGMKNKQIAENLFI 168

Query: 201 SVHTVNAYLGSATVKLDAVNRIQA 224
           S  TV  ++ +   KL   +R+ A
Sbjct: 169 SEETVKVHIRNILKKLQVTSRLAA 192


>gi|297191756|ref|ZP_06909154.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151051|gb|EDY65636.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 231

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA---ARN 173
           L    +G+++       L + V + A G          ++I ++     +         +
Sbjct: 90  LHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLIEEYTRAVPRVPQPDGRLES 149

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L G G ++ EIA +L +S HTV  ++G+   KL   +RIQA+  A   G 
Sbjct: 150 LTTRERETLLLLGRGLSNAEIAAELVVSEHTVKTHVGNVLAKLALRDRIQAVICAYESGL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|270489958|ref|ZP_06207032.1| putative nitrate/nitrite response regulator protein NarL [Yersinia
           pestis KIM D27]
 gi|270338462|gb|EFA49239.1| putative nitrate/nitrite response regulator protein NarL [Yersinia
           pestis KIM D27]
          Length = 240

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166
           I   V         +I              E+++E      +        +  +L    +
Sbjct: 82  IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 141

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL+  +R+ A  
Sbjct: 142 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 201

Query: 227 KAIRF 231
             +  
Sbjct: 202 MYLEN 206


>gi|254501452|ref|ZP_05113603.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222437523|gb|EEE44202.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 236

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 13/229 (5%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPN 66
             ++++   +   L     R+ A     + + + L  P R          +     D   
Sbjct: 17  ISEANAAHHVLDILESNLRRMGA----THILITGLPMPNRPIDNLVQRFRWPDQRNDGIE 72

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-PVRLG 125
               +  D  L          IW        I +       L       + I   PV   
Sbjct: 73  STSLSANDSALMLGLGSNRARIWT-------ITAGDMEHSDLMASAGEGSQIVVVPVTEL 125

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           +    +V  +   L ++   +          I+   EL          L+ RE   L+L 
Sbjct: 126 YPFQAFVFASGPALQVSKYDLSNLEALSAAAISRLRELGVVSGQRPGALSTRERKVLELT 185

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T+ EIA+ L +S  TV+A+L +A+VKL+A N+   + +A+R+G I
Sbjct: 186 AYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 234


>gi|196233056|ref|ZP_03131904.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222863|gb|EDY17385.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 11/151 (7%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152
                     + +  L         +   V  G       +       ++    +E    
Sbjct: 57  DFRLPGADGAESTAHLRTEFPDARVVVLSVFEGEEDIWRAVEAGAMGYVSKSAEVEEVLE 116

Query: 153 CYQVIT---------DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
             + +             +L  +R+     LT RE   L     G +++EIA  L +S  
Sbjct: 117 AIRCVVGGETYFPAPIASKLASRRT--RDALTPREHQVLHHIVAGLSNKEIAAALHMSEA 174

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  ++ +   KL   +R QA   A++ G I
Sbjct: 175 TVKLHISNTLAKLHVADRTQAAIVAVQRGII 205


>gi|166030393|ref|ZP_02233222.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC
           27755]
 gi|166029751|gb|EDR48508.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC
           27755]
          Length = 208

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            + +   TERE   L+L   G ++  IAEKL +S  TV  ++     K    +R +   +
Sbjct: 139 MATSHEFTEREMEVLRLMTTGASNAAIAEKLVISESTVKNHIHRMLEKTGCESRTELAIE 198

Query: 228 AIRFGY 233
           A   G 
Sbjct: 199 ARISGI 204


>gi|313888654|ref|ZP_07822319.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845383|gb|EFR32779.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 195

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L     G T +EIA+KL +S  T+  +L +   KL A N I+A   A+  
Sbjct: 129 EPLTKREEEILIEVLSGLTKKEIADKLYISERTLYNHLANIYAKLGAKNAIEAYKIALEL 188

Query: 232 GYI 234
           GYI
Sbjct: 189 GYI 191


>gi|290509972|ref|ZP_06549342.1| LuxR family transcriptional regulator, maltose regulon positive
           regulatory protein [Klebsiella sp. 1_1_55]
 gi|289776688|gb|EFD84686.1| LuxR family transcriptional regulator, maltose regulon positive
           regulatory protein [Klebsiella sp. 1_1_55]
          Length = 921

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  +   D              L+ERE   LQL  +G  ++EIA  L +S  TV  ++ 
Sbjct: 837 WAGKRAPADGTPFNSGSPDIHGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIK 896

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R QA+++A+    +
Sbjct: 897 NIYAKLKVNSRTQAMSRALEMKLL 920


>gi|227327331|ref|ZP_03831355.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 224

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 19/178 (10%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRL 108
           +  + NY  +  +        + D  +    + + P  W   ++  VI S  + S    L
Sbjct: 44  VVIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNL 100

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIE-----AHGACYQVITDFLE 162
                   G  F +    +    +     E      E I+E            V      
Sbjct: 101 SKEYDIVNGYTFVLHDNNNNLAALSIMFEEHAPTDMENIVEENKDKLQMLLIAVHEKITT 160

Query: 163 L--------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           L          ++       ++RE   L  A  G T  EIA  L + + TV  ++G+ 
Sbjct: 161 LYKEMTQSPQSRKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNV 218


>gi|261364979|ref|ZP_05977862.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
 gi|288566780|gb|EFC88340.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
          Length = 218

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +  S    +  + +         V +       +   A   LT RE   L     G+++
Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRELEILGYLAAGHSN 170

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + IA  L L+  TV  ++ +   KLD  +R+QA   A++ 
Sbjct: 171 KVIARHLELAESTVKVHVQNLLRKLDLSSRVQAAVYAVQH 210


>gi|254974814|ref|ZP_05271286.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092202|ref|ZP_05321680.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313941|ref|ZP_05355524.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516621|ref|ZP_05384297.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649721|ref|ZP_05396623.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519831|ref|ZP_07406178.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 214

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 43/83 (51%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++     + +K  S   NLTE+E S ++L  +G  ++EI+++L LS  T+   + +
Sbjct: 131 VAEKIMYPQKTIEQKHISDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITN 190

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  +R Q +  A +   +
Sbjct: 191 ILGKLELRDRTQLVIFAFKNKIV 213


>gi|223940658|ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890670|gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 217

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAAR 172
           +   +R G          +  L LA + +             +VI D+L     + S   
Sbjct: 92  VLQTLRAGAAGYLLKDAATAELELAIQAVSRGDTYLSPAISKRVIEDYLGRINGQKSPME 151

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT R+   LQL  +G +++E+A  L LSV TV  +      +L   +    +  A+R G
Sbjct: 152 QLTPRQREILQLIAEGKSTKEMAFLLNLSVKTVETHRTQLMDRLGIHDVPGLVRYAMRMG 211

Query: 233 YI 234
            I
Sbjct: 212 LI 213


>gi|260682876|ref|YP_003214161.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686474|ref|YP_003217607.1| two-component response regulator [Clostridium difficile R20291]
 gi|260209039|emb|CBA62150.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212490|emb|CBE03410.1| two-component response regulator [Clostridium difficile R20291]
          Length = 217

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 43/83 (51%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++     + +K  S   NLTE+E S ++L  +G  ++EI+++L LS  T+   + +
Sbjct: 134 VAEKIMYPQKTIEQKHISDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITN 193

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  +R Q +  A +   +
Sbjct: 194 ILGKLELRDRTQLVIFAFKNKIV 216


>gi|284045613|ref|YP_003395953.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949834|gb|ADB52578.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 208

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            +  L+ERE   L L   G T+ EIAE+L LS HTV  +  +   KL A NR +A+ +A 
Sbjct: 143 PSTLLSEREQEVLTLIAGGSTNREIAEELYLSPHTVKEHTSALYRKLKARNRAEAVQRAQ 202

Query: 230 RFGYI 234
           R G +
Sbjct: 203 RIGLL 207


>gi|57234766|ref|YP_181176.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57225214|gb|AAW40271.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 232

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   LQLA  G ++ EIA+KL LS+ TV A+L +   K+    R +AI K  R G
Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLELSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213

Query: 233 YI 234
           Y+
Sbjct: 214 YV 215


>gi|297193099|ref|ZP_06910497.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151643|gb|EFH31285.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 219

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A    + A     ++IT+F +L +    AA      LTERET  L 
Sbjct: 106 DASARQLADGVRVVAAGEALLAPTVTRRLITEFSKLSETPRPAAMTQVADLTERETEVLV 165

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA  L ++  T+  ++    VKL   +R QA   A     +
Sbjct: 166 LIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 216


>gi|295085346|emb|CBK66869.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
          Length = 245

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            +    ++ +  L L       + NLT RE   L+L   G  S+EIA+KL +S+HTVN +
Sbjct: 164 LNLKNGEIFSPSLSLM-----PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIH 218

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
             +   KL   N I+AI      G +
Sbjct: 219 RQNLLRKLGVQNSIEAIRLGQESGLL 244


>gi|84685343|ref|ZP_01013241.1| DNA-binding response regulator, LuxR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666500|gb|EAQ12972.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 203

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 45/107 (42%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              G++  T     L N V   A G  Y  +       + +   A  L ERE   L+   
Sbjct: 96  GAAGFLPKTLSAKSLVNAVRFMAMGEQYVPVDFMTAKEEAKHPLAEKLAEREMQVLKGLT 155

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +G +++EIA  L L+  T+  YL +   K+D  NR QA   A   G 
Sbjct: 156 EGKSNKEIARDLDLTEPTIKLYLKTLYRKIDVNNRTQAALVAREAGL 202


>gi|311278134|ref|YP_003940365.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308747329|gb|ADO47081.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 217

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           V+   +   ++ S  A    LTERE   L     G T+ +IA  L +S +TV  +L +  
Sbjct: 137 VMHPAMYAAEQSSGEAENIPLTERECEILNELRCGATNMDIARALFISENTVRTHLYNVF 196

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   NR QA++ A   
Sbjct: 197 RKLSVKNRTQAVSWANEN 214


>gi|260598854|ref|YP_003211425.1| transcriptional regulator NarP [Cronobacter turicensis z3032]
 gi|260218031|emb|CBA32732.1| Nitrate/nitrite response regulator protein narP [Cronobacter
           turicensis z3032]
          Length = 210

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 14/134 (10%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY------------- 154
           L    +    I   V         +I       L  +   EA                  
Sbjct: 70  LRRDGVSARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEALLEAIRDGAAGAGVFSEQ 129

Query: 155 -QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            Q      E  ++R++    LT RE   LQ    G ++++IA  L +S  TV  ++ +  
Sbjct: 130 VQAYLLTREPEEQRNAPFALLTGRELDVLQEVARGLSNKQIAATLHISEETVKVHIRNLL 189

Query: 214 VKLDAVNRIQAIAK 227
            KL+  +R+ A   
Sbjct: 190 RKLNVRSRVAATVL 203


>gi|229010418|ref|ZP_04167622.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048]
 gi|229165953|ref|ZP_04293718.1| Sensory transduction protein ydfI [Bacillus cereus AH621]
 gi|228617506|gb|EEK74566.1| Sensory transduction protein ydfI [Bacillus cereus AH621]
 gi|228750838|gb|EEM00660.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048]
          Length = 161

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  NLT +E   L+    GY ++EIA  +G++  TV AYL +   KL   +R +A+A +I
Sbjct: 95  AENNLTVKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 154

Query: 230 RFGYI 234
               I
Sbjct: 155 ERKLI 159


>gi|182435647|ref|YP_001823366.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464163|dbj|BAG18683.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 222

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
            FP  L   +            +   +I E              +      +   LT RE
Sbjct: 109 TFPELLHAVRVVAGGHALLAPEITGRLIAEFTR---------QRVSAPPPRSVDGLTARE 159

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L   G ++ +IA++L ++ HTV  ++     K+   +R QA+  A   G +
Sbjct: 160 VEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLV 215


>gi|88196315|ref|YP_501137.1| hypothetical protein SAOUHSC_02675 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|269204023|ref|YP_003283292.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus ED98]
 gi|87203873|gb|ABD31683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|262076313|gb|ACY12286.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269941974|emb|CBI50386.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302752262|gb|ADL66439.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|312830737|emb|CBX35579.1| transcriptional regulatory protein degU (Protease production
           enhancerprotein) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|329315077|gb|AEB89490.1| Oxygen regulatory protein nreC [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 200

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +   + L++RE   L L   GY ++EIAEKL +SV TV A+      KL   ++ + +  
Sbjct: 132 TDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 191

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 192 ALKKKLL 198


>gi|113460191|ref|YP_718248.1| nitrate/nitrite response regulator protein [Haemophilus somnus
           129PT]
 gi|170718227|ref|YP_001785249.1| LuxR family transcriptional regulator [Haemophilus somnus 2336]
 gi|112822234|gb|ABI24323.1| nitrate/nitrite response regulator protein [Haemophilus somnus
           129PT]
 gi|168826356|gb|ACA31727.1| two component transcriptional regulator, LuxR family [Haemophilus
           somnus 2336]
          Length = 209

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V    +    +I              + ++       Q        
Sbjct: 72  LRTEGIDARILILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQIKRVTQGEVILSES 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I + L   + +     +LT+RE + L L   G  +++IA +L +S  TV  ++ +   KL
Sbjct: 132 IKNLLLERQHKDDPIYSLTDREMNVLALIATGLANKQIAGQLFISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A     + 
Sbjct: 192 NVHSRVAATVLYFQH 206


>gi|15925381|ref|NP_372915.1| response regulators of two-component regulatory [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927969|ref|NP_375502.1| hypothetical protein SA2179 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284042|ref|NP_647130.1| hypothetical protein MW2313 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487173|ref|YP_044394.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650934|ref|YP_187192.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87162341|ref|YP_494972.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|148268828|ref|YP_001247771.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394900|ref|YP_001317575.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151222503|ref|YP_001333325.1| transcriptional regulator DegU family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980706|ref|YP_001442965.1| hypothetical protein SAHV_2375 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510583|ref|YP_001576242.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141331|ref|ZP_03565824.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253314728|ref|ZP_04837941.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253730063|ref|ZP_04864228.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734193|ref|ZP_04868358.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255007165|ref|ZP_05145766.2| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794731|ref|ZP_05643710.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258407411|ref|ZP_05680554.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258422261|ref|ZP_05685173.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258439653|ref|ZP_05690399.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|258442790|ref|ZP_05691350.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258446510|ref|ZP_05694665.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258450373|ref|ZP_05698465.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224]
 gi|258451304|ref|ZP_05699337.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|258455251|ref|ZP_05703211.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|262048801|ref|ZP_06021682.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30]
 gi|262051545|ref|ZP_06023766.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3]
 gi|282893837|ref|ZP_06302069.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A8117]
 gi|282920376|ref|ZP_06328099.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A9765]
 gi|282928424|ref|ZP_06336025.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A10102]
 gi|284025411|ref|ZP_06379809.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848934|ref|ZP_06789679.1| two-component system [Staphylococcus aureus A9754]
 gi|295405079|ref|ZP_06814892.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819]
 gi|296276000|ref|ZP_06858507.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209789|ref|ZP_06926185.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297244136|ref|ZP_06928026.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796]
 gi|300910801|ref|ZP_07128251.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304379589|ref|ZP_07362322.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81693835|sp|Q5HDG5|NREC_STAAC RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81696270|sp|Q6G6T0|NREC_STAAS RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81704173|sp|Q7A029|NREC_STAAW RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81705142|sp|Q7A3U5|NREC_STAAN RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81855884|sp|Q99RN8|NREC_STAAM RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|123735950|sp|Q2FEA6|NREC_STAA3 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829240|sp|A7X623|NREC_STAA1 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829241|sp|A6U4C0|NREC_STAA2 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829243|sp|A5IVH2|NREC_STAA9 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829244|sp|A6QJN1|NREC_STAAE RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829245|sp|A8Z580|NREC_STAAT RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829309|sp|Q2FVM7|NREC_STAA8 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|13702340|dbj|BAB43481.1| SA2179 [Staphylococcus aureus subsp. aureus N315]
 gi|14248165|dbj|BAB58553.1| response regulators of two-component regulatory [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21205485|dbj|BAB96178.1| MW2313 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245616|emb|CAG44095.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285120|gb|AAW37214.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87128315|gb|ABD22829.1| transcriptional regulator, DegU family [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|147741897|gb|ABQ50195.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947352|gb|ABR53288.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150375303|dbj|BAF68563.1| transcriptional regulator DegU family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722841|dbj|BAF79258.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369392|gb|ABX30363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726276|gb|EES95005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727888|gb|EES96617.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257788703|gb|EEV27043.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257840923|gb|EEV65374.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257841692|gb|EEV66129.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257847429|gb|EEV71431.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|257851911|gb|EEV75845.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257854578|gb|EEV77526.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257856465|gb|EEV79374.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224]
 gi|257861096|gb|EEV83911.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|257862462|gb|EEV85230.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|259160529|gb|EEW45552.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3]
 gi|259163059|gb|EEW47620.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30]
 gi|282589819|gb|EFB94903.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A10102]
 gi|282594322|gb|EFB99308.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A9765]
 gi|282763895|gb|EFC04023.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A8117]
 gi|285818052|gb|ADC38539.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|294824313|gb|EFG40737.1| two-component system [Staphylococcus aureus A9754]
 gi|294970024|gb|EFG46042.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819]
 gi|296885462|gb|EFH24399.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297178914|gb|EFH38159.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796]
 gi|300887781|gb|EFK82976.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304341765|gb|EFM07671.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315128595|gb|EFT84599.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315197413|gb|EFU27750.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139097|gb|EFW30979.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142526|gb|EFW34335.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329723454|gb|EGG59983.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21172]
 gi|329726678|gb|EGG63139.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21189]
 gi|329730103|gb|EGG66493.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 217

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +   + L++RE   L L   GY ++EIAEKL +SV TV A+      KL   ++ + +  
Sbjct: 149 TDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 208

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 209 ALKKKLL 215


>gi|291085111|ref|ZP_06352103.2| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
 gi|291072010|gb|EFE10119.1| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
          Length = 225

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG--------A 152
              L    +    I   V         +I              EV++EA           
Sbjct: 81  LNALRRDGVTAQIIILTVSDAASDVYALIDAGADGYLLKDSDPEVLLEAIRSGAKGGKAF 140

Query: 153 CYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             +V     E  LF  +      LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 141 STRVSEYLRERDLFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 200

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 201 NLLRKLNVRSRVAATIL 217


>gi|289768636|ref|ZP_06528014.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698835|gb|EFD66264.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 227

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG    +      +  V      L     +         + +++              
Sbjct: 102 LHAGARGYLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRRLLEWLSESEPRPTGPPEPPDG 161

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RET  L L  +G T+ +IA +L +S  TV  ++ +   K    +R QA+  A   G 
Sbjct: 162 LTTRETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGL 221

Query: 234 I 234
           +
Sbjct: 222 V 222


>gi|283457818|ref|YP_003362412.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133827|dbj|BAI64592.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Rothia mucilaginosa DY-18]
          Length = 275

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L L   G ++ EI  +L LS  TV  ++     KL A +R+QA+  A   
Sbjct: 212 EQLSPREFEVLGLIARGLSNAEITRELVLSEATVKTHVSHVLAKLGARDRVQAVIMAYEA 271

Query: 232 GY 233
           G 
Sbjct: 272 GI 273


>gi|184153602|ref|YP_001841943.1| two component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227364675|ref|ZP_03848730.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325682211|ref|ZP_08161728.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|183224946|dbj|BAG25463.1| two component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227070285|gb|EEI08653.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324978050|gb|EGC15000.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 217

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE     L   GY+++EI++K+ +S  TV A+  + + KL    R++ +  AI   
Sbjct: 154 GLSKREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHH 213

Query: 233 YI 234
            I
Sbjct: 214 LI 215


>gi|194466362|ref|ZP_03072349.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
 gi|194453398|gb|EDX42295.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
          Length = 217

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE     L   GY+++EI++K+ +S  TV A+  + + KL    R++ +  AI   
Sbjct: 154 GLSKREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHH 213

Query: 233 YI 234
            I
Sbjct: 214 LI 215


>gi|302525544|ref|ZP_07277886.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434439|gb|EFL06255.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 222

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA----ARNLTERE 178
               G++   ++   +A  +   A G      ++    +     R+         LT RE
Sbjct: 106 AGARGFLTKDTDAEAIARALRSAAAGQSTVDGELQRRLVAAATSRAPVRTKELEGLTARE 165

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L+L   G ++ EIA  L +S  TV  ++     K    +R QA+A A R G 
Sbjct: 166 VEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFSKAGLRDRAQAVAFAYRAGI 220


>gi|144898194|emb|CAM75058.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 209

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++ + L+  +       +LT RE   L+L   G  + EIA+ L +++ TV  +      
Sbjct: 132 ELVREHLDGGEANVP---SLTAREMEVLRLIAQGLKNREIADTLSIAIKTVETHRTKIMQ 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KLD  N  +    AIR G I
Sbjct: 189 KLDLHNSAELATYAIRRGLI 208


>gi|123965417|ref|YP_001010498.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9515]
 gi|123199783|gb|ABM71391.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9515]
          Length = 92

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   + L  DG T++EIA KL +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 15  GLSSREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHG 74

Query: 233 YIC 235
            IC
Sbjct: 75  KIC 77


>gi|220916020|ref|YP_002491324.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953874|gb|ACL64258.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 208

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 156 VITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            +   L     R+ AA     LT RE   L L  +G  ++ IA +LG+S HT   ++ + 
Sbjct: 125 ALDPELAATLLRAPAAEAGGPLTPREREVLALVAEGLGNKAIAGRLGISEHTAKFHVNAI 184

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL A +R +AI +A R G +
Sbjct: 185 LGKLGAGSRAEAIVRAARLGLV 206


>gi|145599420|ref|YP_001163496.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides F]
 gi|145211116|gb|ABP40523.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides F]
          Length = 209

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166
           I   V         +I              E+++E      +        +  +L    +
Sbjct: 82  IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 141

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL+  +R+ A  
Sbjct: 142 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 201

Query: 227 KAIRF 231
             +  
Sbjct: 202 MYLEN 206


>gi|117919601|ref|YP_868793.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|117611933|gb|ABK47387.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 225

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           H     V+          +       L+ERE   L     G++++EIA  + L+  TV  
Sbjct: 139 HLIEPSVLEQMQQSSATAQSGPTHDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKN 198

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KLD  +R QA+ K ++   I
Sbjct: 199 HVSTILAKLDCRDRTQAVLKGLQLSLI 225


>gi|315222040|ref|ZP_07863951.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189006|gb|EFU22710.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 199

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+ +E   LQ A  G +S+EIA+KL LS  TV  Y+ S   KL A NR
Sbjct: 127 ELMEVMMTSKNPLSNQEILVLQAAARGLSSKEIAQKLYLSNGTVRNYMSSILTKLAAENR 186

Query: 222 IQAIAKAIRFGYI 234
           ++A+  A   G+I
Sbjct: 187 LEAVRIAQENGWI 199


>gi|163740011|ref|ZP_02147416.1| two component transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis BS107]
 gi|163743180|ref|ZP_02150562.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383597|gb|EDQ07984.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386756|gb|EDQ11120.1| two component transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis BS107]
          Length = 204

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E        A  L+ RE   L     G +++EIA +L L   T+  ++ +   KL+A NR
Sbjct: 132 EAEAPAHPLADKLSPREIEVLNGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLEAKNR 191

Query: 222 IQAIAKAIRFGY 233
            QA   A   G 
Sbjct: 192 TQAALTAKEAGL 203


>gi|99080717|ref|YP_612871.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99036997|gb|ABF63609.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 233

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  ++   LT RE + L     G +++E+A+ L +SV TV  +  +   KL   + 
Sbjct: 154 SLSPQSQTSREALTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISST 213

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 214 AGLTRYALEHGVL 226


>gi|330828126|ref|YP_004391078.1| putative csgAB operon transcriptional regulatory protein [Aeromonas
           veronii B565]
 gi|328803262|gb|AEB48461.1| Probable csgAB operon transcriptional regulatory protein [Aeromonas
           veronii B565]
          Length = 215

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT RE   ++    G ++ EIA+ L +S HTV ++L +   KL+  NRIQA++ A  
Sbjct: 151 LTAREQEIIRYLMTGASNVEIADSLFVSEHTVKSHLYNVFKKLNVKNRIQAVSWAKE 207


>gi|229115351|ref|ZP_04244759.1| Two-component protein Kinase [Bacillus cereus Rock1-3]
 gi|228668071|gb|EEL23505.1| Two-component protein Kinase [Bacillus cereus Rock1-3]
          Length = 592

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEQFDEQNETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  SA  KL   N+ +A+ KA+  G I
Sbjct: 565 YASSAYTKLGVRNKEEAVQKALEIGII 591


>gi|290955190|ref|YP_003486372.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644716|emb|CBG67801.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177
              +GYV+ +     L                GA   ++ ++L  +        + +T R
Sbjct: 103 AGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALVRNYLDRVRHGEEPPDQVVTPR 162

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  +G++S+EIAE L +S+ TV+ +  +   KL   +R++    AIR G I
Sbjct: 163 EEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGLI 219


>gi|291303524|ref|YP_003514802.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572744|gb|ADD45709.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 217

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 18/161 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +  R+         +A  V         +I           +A   ++
Sbjct: 57  LDVHMPDGGGRAVLERVRASRPDVKFLALSVSDAAEDVIGLIRAGARGYVTKTIAASELV 116

Query: 148 EAHG------------ACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEE 193
            A                  V+  F    +  +       LT RE   L+L   GY  +E
Sbjct: 117 AAIRRVAEGDAVFSPRLAGFVLDAFASKSQAPASDPELDQLTNREREVLRLLARGYAYKE 176

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA +L +S+ TV  ++ +   KL   NR +    A+    +
Sbjct: 177 IARELYISIKTVETHVSNVLRKLQMSNRYELSRWAVDRRIV 217


>gi|163751528|ref|ZP_02158750.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica
           KT99]
 gi|161328536|gb|EDP99689.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica
           KT99]
          Length = 209

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDFLEL 163
           L    +    +   V         ++              ++++E      Q      E 
Sbjct: 72  LRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKQAMQGHRVISES 131

Query: 164 FKK----------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +                 NLT RE   LQL   G ++  I+E+L +S  TV  ++ +  
Sbjct: 132 VEDYLYELKDAIDEKDWIDNLTPRELQILQLVAQGMSNRTISEQLHISEGTVKVHVKNLL 191

Query: 214 VKLDAVNRIQAIAK 227
            K +A +R +   +
Sbjct: 192 RKANAKSRTEMAVR 205


>gi|284029210|ref|YP_003379141.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808503|gb|ADB30342.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 213

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 18/161 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +          ++  ++         +A  V         VI           ++   ++
Sbjct: 53  LDVHLPGGGGTEVMKQVHQRHPEVKFLALSVSDAAEDVIGVIRAGARGYVTKNISGTELV 112

Query: 148 EAHGA--------CYQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEE 193
           +A G           ++    L+ F      A        L++RE   L+L   GY  +E
Sbjct: 113 DAIGRVADGDAVFSPRLAGFVLDAFSGAIDIASVDEDLDRLSQREREVLRLIARGYAYKE 172

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +A +L +SV TV  ++ S   KL   NR +    A     +
Sbjct: 173 VARELFISVKTVETHVSSVLRKLQLSNRHELTRWATDRRLV 213


>gi|284032205|ref|YP_003382136.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811498|gb|ADB33337.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 221

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   + L G+G +++EIA +L LS  T   ++  A VKL   +R Q +  A + 
Sbjct: 153 DVLTEREREIVALVGEGLSNDEIAARLVLSPATAKTHVSRAMVKLGVRDRAQLVVVAYQT 212

Query: 232 GYI 234
           G +
Sbjct: 213 GLV 215


>gi|196234582|ref|ZP_03133403.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196221370|gb|EDY15919.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSAA---RNLTERE 178
              +GY+I +        E I + H         +    ++ F+  +  A     L+ RE
Sbjct: 99  AGASGYLIKSGP-PEKLFEAIRDVHSGGAPFSAHIARKVVQYFRGTTKPARETEKLSPRE 157

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              ++L   GY  +EI +KLG+   TV +Y+ +  +KL   NR +A+AK
Sbjct: 158 CEVIELLASGYIYKEIGDKLGIGAETVRSYVKNICIKLQVKNRTEAVAK 206


>gi|52082580|ref|YP_081371.1| CheY-like [Bacillus licheniformis ATCC 14580]
 gi|52787980|ref|YP_093809.1| YvfU [Bacillus licheniformis ATCC 14580]
 gi|52005791|gb|AAU25733.1| CheY-like [Bacillus licheniformis ATCC 14580]
 gi|52350482|gb|AAU43116.1| YvfU [Bacillus licheniformis ATCC 14580]
          Length = 200

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 144 EVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           + + +A   C +    F  EL          LTERE   L+LA  G T++EI+E+L LS 
Sbjct: 109 DDLADAIRKCTEGKRTFSPELTFNAVRETNPLTEREQDILRLAYIGKTTKEISEELFLSS 168

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+     KLDA NR++A   A   G+I
Sbjct: 169 GTVRNYISEIMQKLDAKNRMEAARIAEGKGWI 200


>gi|22125339|ref|NP_668762.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           KIM 10]
 gi|45442440|ref|NP_993979.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Microtus str. 91001]
 gi|167399199|ref|ZP_02304723.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|21958219|gb|AAM85013.1|AE013747_3 nitrate/nitrite response regulator [Yersinia pestis KIM 10]
 gi|45437305|gb|AAS62856.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Microtus str. 91001]
 gi|167051703|gb|EDR63111.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. UG05-0454]
          Length = 220

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166
           I   V         +I              E+++E      +        +  +L    +
Sbjct: 93  IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 152

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL+  +R+ A  
Sbjct: 153 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 212

Query: 227 KAIRF 231
             +  
Sbjct: 213 MYLEN 217


>gi|254453849|ref|ZP_05067286.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
 gi|198268255|gb|EDY92525.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
          Length = 204

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LTERE   L+   +G ++++IA  L +   TV  ++ +   K+   NR QA   
Sbjct: 138 NPLVDKLTERELQMLKGLTEGKSNKQIARDLEIREPTVKLHMKTLYRKMGVENRTQAAMI 197

Query: 228 AIRFGY 233
           A   G 
Sbjct: 198 ASEAGL 203


>gi|77919001|ref|YP_356816.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545084|gb|ABA88646.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM
           2380]
          Length = 214

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              +    A  NLT+ E   L+   +G T+ EIA+   +S+ T+  ++     KL+  NR
Sbjct: 142 RQRQDDGGAEHNLTKTEIKVLKHIAEGKTNNEIAQIQFVSIETIKTHVQRIFKKLEVGNR 201

Query: 222 IQAIAKAIRFGYI 234
           ++A+A A +   I
Sbjct: 202 MEAVAVARKKNII 214


>gi|302551299|ref|ZP_07303641.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468917|gb|EFL32010.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +  +   + A + ++        +           +     L++RE   L L G G
Sbjct: 110 RPAELLDAIRTVAAGDSLLSPGPTARLIQRFLRSPSAPETGGPECLSDREREVLTLVGRG 169

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             + EIAE LGLS  T   ++     KL A +R Q +  A   G +
Sbjct: 170 LNNTEIAESLGLSPLTAKTHVSRIMGKLAARDRAQLVIVAYESGLV 215


>gi|256819682|ref|YP_003140961.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
 gi|256581265|gb|ACU92400.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
          Length = 234

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L LA  G++S+EIAE+L +S +TVN +  +   K +  + I+AI  A R G 
Sbjct: 174 LTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDLARRKGI 233

Query: 234 I 234
           +
Sbjct: 234 L 234


>gi|226365679|ref|YP_002783462.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244169|dbj|BAH54517.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 219

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 3/123 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +G         + +  +   A                +    
Sbjct: 99  RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPQLDPE 155

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE+L +SV TV  +  +   K    NR      A R
Sbjct: 156 LDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHR 215

Query: 231 FGY 233
              
Sbjct: 216 RRI 218


>gi|187250721|ref|YP_001875203.1| two component LuxR family transcriptional regulator [Elusimicrobium
           minutum Pei191]
 gi|186970881|gb|ACC97866.1| Two-component transcriptional regulator, LuxR family
           [Elusimicrobium minutum Pei191]
          Length = 215

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT +E   LQL  +G++S+EIA++ GLS++TV+ +  +   KLD   + + +  AI+ G
Sbjct: 152 GLTPKEKQILQLIAEGFSSKEIAKEFGLSLNTVHVHRNNIMRKLDIHKQAELVRYAIKEG 211

Query: 233 Y 233
            
Sbjct: 212 I 212


>gi|328885370|emb|CCA58609.1| Response regulator containing a CheY receiver domain and an HTH
           DNA-binding domain [Streptomyces venezuelae ATCC 10712]
          Length = 237

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174
           L    +G+++       L + V + A G          +++  +     +R++    L  
Sbjct: 95  LHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLVEQYTAGGPRRTAPDPRLDV 154

Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            T RE   L L   G ++ EIA +L +S HTV  ++G+   KL   +RIQA+  A   G 
Sbjct: 155 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 214

Query: 234 I 234
           +
Sbjct: 215 V 215


>gi|289549975|ref|YP_003470879.1| Two-component response regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659398|ref|ZP_07912261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|289179507|gb|ADC86752.1| Two-component response regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|315495517|gb|EFU83849.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 217

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + L++RE   L L   GY ++EIAEKL +SV TV A+      KL   ++ + +  A+
Sbjct: 151 PFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMSKLGLKSKPELVEYAL 210

Query: 230 RFGYI 234
           +   +
Sbjct: 211 KKKLL 215


>gi|290963132|ref|YP_003494314.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652658|emb|CBG75791.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 37/84 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G   +V+                LT RE   L L G G +++EIAE+L ++  TV  +  
Sbjct: 135 GLIARVLAAPSPGDLVDPRRLATLTPREREVLTLVGSGLSNDEIAERLFVTPVTVKTHAN 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
            A  KL A +R Q +  A   G +
Sbjct: 195 RAMTKLGARDRAQLVVIAYETGLV 218


>gi|238893250|ref|YP_002917984.1| trans-acting regulatory protein of aco operon [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545566|dbj|BAH61917.1| trans-acting regulatory protein of aco operon [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 921

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE   LQL  +G  ++EIA  L +S  TV  ++ +   KL   +R QA+++A+   
Sbjct: 859 ELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918

Query: 233 YI 234
            +
Sbjct: 919 LL 920


>gi|116628047|ref|YP_820666.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101324|gb|ABJ66470.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus
           thermophilus LMD-9]
          Length = 200

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +  +     L++RE   L +   G T++EIAE L LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+  A    ++
Sbjct: 187 TEAVRIAKEKDWL 199


>gi|15598795|ref|NP_252289.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107103113|ref|ZP_01367031.1| hypothetical protein PaerPA_01004182 [Pseudomonas aeruginosa PACS2]
 gi|116051597|ref|YP_789565.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890176|ref|YP_002439040.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254236515|ref|ZP_04929838.1| hypothetical protein PACG_02512 [Pseudomonas aeruginosa C3719]
 gi|254242297|ref|ZP_04935619.1| hypothetical protein PA2G_03038 [Pseudomonas aeruginosa 2192]
 gi|296387897|ref|ZP_06877372.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313108957|ref|ZP_07794932.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
 gi|9949755|gb|AAG06987.1|AE004780_6 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115586818|gb|ABJ12833.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126168446|gb|EAZ53957.1| hypothetical protein PACG_02512 [Pseudomonas aeruginosa C3719]
 gi|126195675|gb|EAZ59738.1| hypothetical protein PA2G_03038 [Pseudomonas aeruginosa 2192]
 gi|218770399|emb|CAW26164.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310881434|gb|EFQ40028.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
          Length = 261

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 59/228 (25%), Gaps = 26/228 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             + L++  +   ++    +  +   P+                      +    D F  
Sbjct: 29  RLVRLLEQYVPFDSWV--ALLFSQGRPQVFAECPGADGGPDPLFQDYLRGLYLL-DPFYI 85

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                    +++                R     +    I   V+L   +   +      
Sbjct: 86  ASRENPCSGLFRLADVAPECFEQTDYYQRYFRLNVVADEIQINVQLSGERTLCLSL-GSR 144

Query: 139 LMLANEVIIEAHGA---CYQVITDFLELFKK--RSSAAR-----------------NLTE 176
                E +            ++   L    +   S AA                   LT 
Sbjct: 145 RRFTPEQLAVLGLVRPWVAGLMRQRLAFEDEVLNSPAAPEPGWQGSLEKVAEQMGTPLTA 204

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           RE    +L   G +S+EIA KL +S  TV  +      KL   ++ + 
Sbjct: 205 RELEVGRLMLSGCSSKEIARKLAISAETVKVHRKHMYGKLGIKSQSEL 252


>gi|304439828|ref|ZP_07399722.1| possible response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371567|gb|EFM25179.1| possible response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 196

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   L+    G   ++IA+KL +S  T+  ++ +   KL A N ++A  +A+  
Sbjct: 130 ETLTEREVEVLREMIKGENKKDIAKKLYISERTLYNHISNIYEKLGAKNIVEAYNRAMEL 189

Query: 232 GYI 234
           GYI
Sbjct: 190 GYI 192


>gi|325676301|ref|ZP_08155980.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325552862|gb|EGD22545.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 208

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              L+++       L+ RE   L L   G ++  IA++L +S  TV ++L  A  KL   
Sbjct: 133 AQRLYRRMQQPRVELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVD 192

Query: 220 NRIQAIAKAIRFGYI 234
           +R  A+A A   G I
Sbjct: 193 SRTAAVAAARERGLI 207


>gi|296140116|ref|YP_003647359.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296028250|gb|ADG79020.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 215

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 32/64 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L+ RE   L L  DG ++ EI   + LSV TV  ++ +   KL   NR+QA   A R
Sbjct: 147 TERLSPREREVLVLLADGLSNLEIGRTMHLSVGTVKDHVSALLAKLGVANRVQAALVAQR 206

Query: 231 FGYI 234
            G +
Sbjct: 207 AGLL 210


>gi|224023812|ref|ZP_03642178.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM
           18228]
 gi|224017034|gb|EEF75046.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM
           18228]
          Length = 149

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           +     +++ +  + + ++  S   +L++RE   +     G T++EIAE+L +SVHTV  
Sbjct: 55  DLDAVAHKI-STLMNVNEEEDSDQNSLSQREKEIIGCVVRGMTNKEIAEQLFISVHTVIT 113

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  + T KL   +       AI    +
Sbjct: 114 HRRNITRKLQIHSAAGLTIYAIVNKLV 140


>gi|70730584|ref|YP_260325.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344883|gb|AAY92489.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 224

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 9/209 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79
           +      + A   A Y I++ L     Q     L+                Y D     H
Sbjct: 18  IAAFTRVVPASLCAFYRIDAQL-----QARDFSLYRMPEQMHQAYLQHFRHY-DPLQPRH 71

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-- 137
             +   P++   +          ++             +      G      +    +  
Sbjct: 72  CAAAGRPVLSLHMGMAHQGHHESEVYQGFLQRHGVLDVVEILACDGERPVAGLSLLRDVG 131

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               + E +   H     +    L  + +       LT RE     L  DG  ++ IA +
Sbjct: 132 LGHFSVEELGTLHALQGLLEIAALAPWSQVDERLSGLTPREREIAWLLRDGADNKTIARR 191

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           L L + TV  +L +   K+ A NR + + 
Sbjct: 192 LDLGLPTVKTHLINLFRKVGASNRTELVR 220


>gi|258650856|ref|YP_003200012.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554081|gb|ACV77023.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 228

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                       S  + LT RE   L L   G ++ EI++ L +   T   ++     KL
Sbjct: 141 FASHTPADLPGPSELQALTAREREVLVLIAHGLSNAEISDHLVVGEGTTKTHVNRIFNKL 200

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+A A + G +
Sbjct: 201 GLRDRAQAVAMAYKSGLL 218


>gi|284030392|ref|YP_003380323.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809685|gb|ADB31524.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 217

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
              +    + A     ++++    L    + AA   + RE   L     G ++ EI  +L
Sbjct: 119 RAASRGETVLAPPVAARLMS---RLRTPAAPAAVQPSPRELEVLAAVARGLSNAEIGREL 175

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +   TV  +L     KLD  +R +A+  AI  G +
Sbjct: 176 FIGEATVKTHLQRLFSKLDVDDRTRAVTVAIERGLL 211


>gi|213857580|ref|ZP_03384551.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 99

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           EV +       + ++    L      +     ++RE   L+   +G TS EIA  L +S 
Sbjct: 8   EVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISE 67

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +TVN +  +   K +A N+ Q    A   G I
Sbjct: 68  NTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 99


>gi|186470747|ref|YP_001862065.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197056|gb|ACC75019.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 215

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 15/140 (10%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV----------- 156
           +    +    I   V          +       L  ++  E      Q            
Sbjct: 71  MRQAGVDARFIMLTVSDNERDVVAALRAGAHGYLLKDMDPEDLCVSLQKALKGTAVLSES 130

Query: 157 ----ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
               +   L   ++  +A  +LT RE         G  ++ IA KL +SV TV  ++   
Sbjct: 131 VTGSLVHALSGGQRIPAAQNDLTARELEVFDYLVAGLCNKAIARKLDISVGTVKVHVKHV 190

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KLD  +R++A+      G
Sbjct: 191 LRKLDLHSRLEAVLWQQEHG 210


>gi|39998319|ref|NP_954270.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39985265|gb|AAR36620.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
 gi|298507253|gb|ADI85976.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 229

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   +++  +G TS +IAE L L++ TV  +  +   KL   ++++ +  A R G 
Sbjct: 159 LTPREQQVMRMIVEGATSRQIAESLELTLKTVENHRTNLMRKLQVHSKLELVRYAARLGL 218

Query: 234 I 234
           I
Sbjct: 219 I 219


>gi|16331883|ref|NP_442611.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1001802|dbj|BAA10682.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 209

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L     G ++ +IA  L +   TV +++     KLD  +R QA+  A++ 
Sbjct: 145 PELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKR 204

Query: 232 GYI 234
           G +
Sbjct: 205 GIV 207


>gi|229590732|ref|YP_002872851.1| GerR family regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229362598|emb|CAY49506.1| GerR family regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 219

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 10/209 (4%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79
           L      +     A Y ++  L     Q     LH    +             D     +
Sbjct: 14  LQAFTQLVPVSQAAFYCVDRQL-----QACDFRLHGMSREMHRDYLD-NYRQFDPLQPRN 67

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF--TSE 137
             S  L ++                             +             +    T+E
Sbjct: 68  CLSSGLTVVPLGFAMARQPPRDSHRYRNFLQRYGVVDVVEIVAHRADQPQAAISLLRTAE 127

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   + + + +     ++   +   +    A   LT +E     L   G +++++A +
Sbjct: 128 QGVFTADQLTQLNAL-QALLQMAVANMQPCDDALAGLTPKERQIAWLLRQGASNKQLALE 186

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LG+ + T+  +L     K    +R + +A
Sbjct: 187 LGVGLPTIKTHLIHLFRKTGVSSRTELVA 215


>gi|312863667|ref|ZP_07723905.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|311101203|gb|EFQ59408.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
          Length = 200

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +  +     L++RE   L +   G T++EIAE L LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+  A    ++
Sbjct: 187 TEAVRIAKEKDWL 199


>gi|298245303|ref|ZP_06969109.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552784|gb|EFH86649.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            ++    +TERE   L L   GYT+++IAE L +S  T   ++     KL    R +A  
Sbjct: 141 ANAPKEAITEREREVLALVARGYTNKQIAEGLSMSEKTARNHVSHILEKLGLTRRSEAAV 200

Query: 227 KAIRFGYI 234
            A+    +
Sbjct: 201 YAVEHNLV 208


>gi|322417997|ref|YP_004197220.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320124384|gb|ADW11944.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 212

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             Q +   L+        A  LT+RE   +++   G  ++EIA++L +S  TV  +L + 
Sbjct: 131 AKQALEKLLKREAGGREVAGLLTQREIELVRMVAGGSRNKEIADRLCISEGTVKVHLHNI 190

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             K++   R+  +  A   G +
Sbjct: 191 YQKINVDGRVALLRYAQEKGLV 212


>gi|319795618|ref|YP_004157258.1| autoinducer-binding domain protein [Variovorax paradoxus EPS]
 gi|315598081|gb|ADU39147.1| Autoinducer-binding domain protein [Variovorax paradoxus EPS]
          Length = 320

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 69/251 (27%), Gaps = 29/251 (11%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++ + +     +  +   +     +  T++      R Q       N   +         
Sbjct: 64  RARAPEARQRMVRGMLGSMGFDWLSYGTVSLVGGRVRTQSFFTAYAN--AEWVQRYFASN 121

Query: 70  ETYGDDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-- 122
               D          LP+ W      +I       +  Q+ +         +G+ F V  
Sbjct: 122 HMQVDPRHQETPLSSLPLTWDLEQIEAIAAAGTACAQQQVFLDDMRACGMHSGMLFRVAS 181

Query: 123 --RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--------------- 165
                 H    V          +  I          + +FL   +               
Sbjct: 182 LKNSNEHAVIGVQSQRSGRDWISSEIAGQALMLGFSVHEFLARHELTPSEVDAQASLSSL 241

Query: 166 ---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
               R     +L+  +   L     G + +EIA++L +S H V+ ++     +    NR+
Sbjct: 242 QHAARPPEGAHLSPMQQRILAHLLHGLSDKEIAQRLSVSAHAVDYHMRQLRRRFAVRNRL 301

Query: 223 QAIAKAIRFGY 233
           Q        G+
Sbjct: 302 QLANAVQDAGW 312


>gi|302557180|ref|ZP_07309522.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces griseoflavus Tu4000]
 gi|302474798|gb|EFL37891.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces griseoflavus Tu4000]
          Length = 382

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 44/113 (38%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR     +   +  +   +LA  V         +   +              LT RE   
Sbjct: 265 VRRDDLVHAVRVVAAGDSLLAPAVTRRLVADIVRRRRERAAADTATPQRLDTLTAREVET 324

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G ++ EIA  L +S HTV  ++ +   KL   +R+QA+  A   G I
Sbjct: 325 LRLLARGLSNAEIATTLFVSEHTVKTHVSNVLGKLALRDRVQAVICAYETGLI 377


>gi|312198094|ref|YP_004018155.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229430|gb|ADP82285.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +     +   ++ ++    LT RE   L+L   G  + EIA+ L +S  TV +++G+
Sbjct: 132 RMMRAYRGAVASRRREAARLDLLTAREHDVLRLLARGQVNAEIAQALRVSPGTVKSHIGA 191

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R  AI  A   G +
Sbjct: 192 IFEKLGVRDRAAAIVFAFDHGIV 214


>gi|239942277|ref|ZP_04694214.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988743|ref|ZP_04709407.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445736|ref|ZP_06585126.1| response regulatory protein [Streptomyces roseosporus NRRL 15998]
 gi|291348683|gb|EFE75587.1| response regulatory protein [Streptomyces roseosporus NRRL 15998]
          Length = 214

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +  +  S   +LT+RE   L   
Sbjct: 105 AGATGYLLKAERPEELFAAIRSAAQGRTTLSAPVASRVMARMRSPRPSLTDRERDILAQL 164

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + +IA  L +S  TV  +LG    KL    R  A++ A     +
Sbjct: 165 SQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213


>gi|170723583|ref|YP_001751271.1| ATP-dependent transcriptional regulator LuxR [Pseudomonas putida
           W619]
 gi|169761586|gb|ACA74902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudomonas putida W619]
          Length = 905

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 44/86 (51%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A     +++    EL    S    +L+ RE + L+L   G ++++I+E+L +S+HTV  +
Sbjct: 819 ACKVQVELLARLPELAAPGSGTCESLSGRELAVLELIAQGCSNQQISERLFISLHTVKTH 878

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL    R QA+A+A   G +
Sbjct: 879 ASHINSKLGVERRTQAVARAKSLGLL 904


>gi|328884928|emb|CCA58167.1| transcriptional regulator, LuxR family [Streptomyces venezuelae
           ATCC 10712]
          Length = 327

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 15/225 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           + + L  +  RL  +    +A       ++      +    +      D  + +    + 
Sbjct: 118 RITGLDHVRERLEDLAANARAE-----CLSLLPGGAQLPDTMDASQPLDQLALERGVKIR 172

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
             Y + F     +    + +     +   E+     V +   ++       PV     + 
Sbjct: 173 SIYQESF----RNDPPTVEYVRWYCDLGGEARTVPVVPMLMVIVDREAALVPVDPEDGRA 228

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G +       + +  ++        ++        +     A +L+ +E   L L G G 
Sbjct: 229 GAL------EVRSPGLVHALVVLFDRLWDAGTPFGETPRRDAHDLSPQERELLMLLGIGC 282

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T +  A +LG+S+ TV         +L A +R +A  +A + G++
Sbjct: 283 TDDIAARRLGISLRTVRRMSSELMNRLGARSRFEAGVRAAKEGWL 327


>gi|319441256|ref|ZP_07990412.1| two-component system transcriptional regulatory protein
           [Corynebacterium variabile DSM 44702]
          Length = 205

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
            L     GY++  +    L   V+  A G           L ++       L+ RET  L
Sbjct: 94  SLAAGARGYLLKDAPETDLHRAVMSTARGDPTFSPEVGAALARRVGRPDLALSRRETEIL 153

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    G ++ E+A  L +S  TV  +L     KL   NR  A+ +A     I
Sbjct: 154 RALATGASNREVASSLFISPATVKTHLIHIYRKLGVDNRTAAVTEAQVRKLI 205


>gi|298369040|ref|ZP_06980358.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298283043|gb|EFI24530.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 218

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +  S    +  + +         V +       +       LT RE   L     G+++
Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPASPRADHLLSTLTPREMEILGYLAAGHSN 170

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + IA  L L+  T+  ++ +   KL+  +R+QA   A++ 
Sbjct: 171 KVIARHLELAESTIKVHVQNILRKLNLSSRVQAAVYAVQH 210


>gi|298250569|ref|ZP_06974373.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548573|gb|EFH82440.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 222

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRS------SAARNL 174
           L     GY++  ++   L + +   A        +++   L               A  L
Sbjct: 101 LRAGACGYLLKDTDRETLFHAIRAAARGDLLLQPEIMARILARTTDAPHSTPSRPQAEEL 160

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+    G  S+EIA +LG+S+ TV ++L S   KL   +R  A+A  I  G +
Sbjct: 161 TERECEVLEAVARGERSKEIASRLGISLRTVGSHLTSIYSKLGVDSRASAVATGIERGLL 220


>gi|212702417|ref|ZP_03310545.1| hypothetical protein DESPIG_00433 [Desulfovibrio piger ATCC 29098]
 gi|212674078|gb|EEB34561.1| hypothetical protein DESPIG_00433 [Desulfovibrio piger ATCC 29098]
          Length = 222

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 157 ITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +   +   ++R S A        L+ RE    +L  DGY+  +I + L +S  TV  +  
Sbjct: 137 MAALMRQNRQRLSPAEGGPDIGMLSPREKEIFRLLADGYSVRQIGDALNISPKTVETHKY 196

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KL A +  +    AIR G +
Sbjct: 197 SVLTKLRASSINELTKMAIRLGLV 220


>gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 237

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  +     LT  E         G T+++I+ +L +S  TV  +L S   KL   NR Q
Sbjct: 162 EETVTPTPLPLTPAEERVFWEVIQGLTNKQISNRLFISPRTVQTHLSSILNKLKLGNRAQ 221

Query: 224 AIAKAIRFGY 233
            I  A   GY
Sbjct: 222 LIRFAYENGY 231


>gi|325520456|gb|EGC99559.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 510

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 23/170 (13%)

Query: 88  IWQSIQEETVIESSGQLSVRLEG------------GLLPFAGIAFPVRLGFHKNGYVIFT 135
           +W        +++       +                   +     +         ++  
Sbjct: 322 LWAERGARQRLDAQLARDGNVRNADVQIRTLDGDVRDCLVSADPVAIHGQDCLLVALLDI 381

Query: 136 SEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQL 184
           S+      E+       + +A      +I     + +  +  A      LT RE     L
Sbjct: 382 SDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDL 441

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G   +EIA +LGL+ +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 442 LCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|227503398|ref|ZP_03933447.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227075901|gb|EEI13864.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 253

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  +  LT RE   L+L   GY++ EI+E+  +S+ TV  ++     K  + +R+QA+  
Sbjct: 176 APPSAELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLY 235

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 236 AYTHGVV 242


>gi|225872958|ref|YP_002754415.1| two-component system regulatory protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792212|gb|ACO32302.1| two-component system regulatory protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 216

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L+    G  ++ IAE+L +S  TV +++ +   KL A +R  A+  A+R 
Sbjct: 150 DELSKRELEILRQVAAGLPNKLIAERLSISPDTVKSHIANILSKLGANDRTHAVTLAVRR 209

Query: 232 GY 233
           GY
Sbjct: 210 GY 211


>gi|229130601|ref|ZP_04259557.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|6759482|emb|CAB69808.1| putative two-component response regulator [Bacillus cereus ATCC
           14579]
 gi|228652940|gb|EEL08822.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 159

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 98  PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 157

Query: 233 YI 234
           +I
Sbjct: 158 WI 159


>gi|300725937|ref|ZP_07059399.1| transcriptional regulator [Prevotella bryantii B14]
 gi|299776788|gb|EFI73336.1| transcriptional regulator [Prevotella bryantii B14]
          Length = 214

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
             +  H    Q +T+ L + ++ +      NLT+ E   L+    G T++EIAEK   S 
Sbjct: 116 FAMRNHRYICQRMTEMLLVSREVTPEKEQINLTKTEIEILKDIALGMTTKEIAEKRFSSF 175

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           HTVN +  +   KL+  N  +A   A+R G +
Sbjct: 176 HTVNTHRKNIFRKLNVNNVHEATKYALRAGLV 207


>gi|256396266|ref|YP_003117830.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362492|gb|ACU75989.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            +L + +  A   LT+RE        +G +++EIA +L LS  TV  ++  A VK+ A +
Sbjct: 148 RQLDQAQRGALDALTDRERQITGFVAEGLSNDEIAARLVLSPATVKTHVNRAMVKVGARD 207

Query: 221 RIQAIAKAIRFGY 233
           R Q +  A R G 
Sbjct: 208 RAQLVVFAHRSGL 220


>gi|37681138|ref|NP_935747.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|320155205|ref|YP_004187584.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|326423837|ref|NP_760342.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
 gi|37199889|dbj|BAC95718.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|319930517|gb|ADV85381.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|319999206|gb|AAO09869.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
          Length = 215

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 12/147 (8%)

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF---PVRLGFHKNGYVIFTSEFLML 141
           LP+IW+   E  +     +L+     G      I +    +         VI    +L  
Sbjct: 72  LPLIWKG-FETVLCNVPSRLTTEELIGFGQCKAIFYRDTAITDMAKGLNSVINGKSWLPR 130

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
                +  +            +    S    +LT RE   L+    G ++ +IAE L +S
Sbjct: 131 DVSAQLIHYYRNM--------VCSHTSPVNVDLTMREIQVLRCVQSGKSNSQIAEDLFIS 182

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
             TV ++L     KL   NR+QA A A
Sbjct: 183 EFTVKSHLYQTFRKLSVKNRVQAAAWA 209


>gi|325916009|ref|ZP_08178302.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537819|gb|EGD09522.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 213

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L L   G ++++I   L +S  TV A++ +   KL   +R  A+  A+R 
Sbjct: 147 DALSARETEVLSLVATGCSNKQIGNALSISEETVKAHMKNILAKLGVRDRTHAVTVALRR 206

Query: 232 GYI 234
           G +
Sbjct: 207 GIL 209


>gi|262173869|ref|ZP_06041546.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451]
 gi|261891227|gb|EEY37214.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451]
          Length = 200

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L    +
Sbjct: 73  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 132

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 133 ESNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 192

Query: 227 KAIRF 231
             +  
Sbjct: 193 LYLER 197


>gi|302529365|ref|ZP_07281707.1| response regulatory protein [Streptomyces sp. AA4]
 gi|302438260|gb|EFL10076.1| response regulatory protein [Streptomyces sp. AA4]
          Length = 211

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 40/109 (36%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +  +  +    LT+RE   L+  
Sbjct: 102 AGATGYLLKAESADELYAAIRAAAAGRTALSAPVADRMMAQLRAPRPALTDRERDILEQL 161

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA +L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 162 AQGLGNREIARRLFISEATVKTHLGRIYEKLGVDTRAGAVAVAKEQRLL 210


>gi|189353456|ref|YP_001949083.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189337478|dbj|BAG46547.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 244

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 57/231 (24%), Gaps = 22/231 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72
             +    LH   +   A  FA  +           +    EL                  
Sbjct: 12  AADWQRALHACVDAFDA--FASPSAIVFYRLDASGEPADFELFGMPESMHRTYVA-RYRM 68

Query: 73  GDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            D        S    ++  + Q       +     R          +   +R      G 
Sbjct: 69  LDPLHPSRCASDARTVVTLASQLPDECRDASAYWTRFLRRHGVADVVEIWLRDDGRTVGA 128

Query: 132 VIFTSEFLMLAN---------------EVIIEAHGACYQVITDFLELFKK--RSSAARNL 174
                     A                + +          +T  L   +   R      L
Sbjct: 129 FSLLRFDTRGAARGGDGASTRFAPGEIDALARLQPLAEAALTPLLRTRRGIHRIECEARL 188

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           T RE    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 189 TYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239


>gi|154685055|ref|YP_001420216.1| YdfI [Bacillus amyloliquefaciens FZB42]
 gi|154350906|gb|ABS72985.1| YdfI [Bacillus amyloliquefaciens FZB42]
          Length = 211

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 156 VITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           ++  F E+  ++ ++    LT++E   L+    G+ S+ IA  LG+S  TV A L S   
Sbjct: 128 ILRRFREMKMERANANETQLTDKEIIVLEAVAQGHKSKAIAFDLGISERTVKARLTSIYN 187

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A +R +A+  A++ G +
Sbjct: 188 KLGADSRTEAVTIAMQKGIL 207


>gi|323176891|gb|EFZ62481.1| response regulator [Escherichia coli 1180]
          Length = 204

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ----- 155
              L    +    I   V         +I              EV++EA  A  +     
Sbjct: 60  LNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 119

Query: 156 --VITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +L   +   +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 120 SERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 179

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 180 NLLRKLNVRSRVAATIL 196


>gi|289705344|ref|ZP_06501740.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557859|gb|EFD51154.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 230

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYT 190
           +   + ++  +           ++ +D +   +  ++ +A  +LT RE   L L   G  
Sbjct: 125 VHRGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVLMAQGAA 184

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA +L LS  TV  ++G    KL A +R+QA+  A R G +
Sbjct: 185 NLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228


>gi|284032185|ref|YP_003382116.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811478|gb|ADB33317.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 222

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           VI   + ++         H                 S     LT RE   L L   G ++
Sbjct: 118 VIAAGDGMLAPTVTRRLIHAFAQAA------PTPGTSQTLDRLTPREREVLALLAAGRSN 171

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EI ++LG++  TV  ++ +   KLDA +R+QA   A   G +
Sbjct: 172 AEIGDELGVATGTVKTHVNALLSKLDARDRVQATIIAYDTGLV 214


>gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 236

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT  E         G T++EI+++L +S  TV  +L S   KL   NR Q +  A
Sbjct: 167 PKPLPLTPAEERVFWQVIQGLTNKEISDRLFISPRTVQTHLSSILHKLKLHNRSQLVRFA 226

Query: 229 IRFGY 233
              GY
Sbjct: 227 YEQGY 231


>gi|306836360|ref|ZP_07469338.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304567720|gb|EFM43307.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 253

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  +  LT RE   L+L   GY++ EI+E+  +S+ TV  ++     K  + +R+QA+  
Sbjct: 176 APPSAELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLY 235

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 236 AYTHGVV 242


>gi|152988324|ref|YP_001346926.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963482|gb|ABR85507.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 262

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 8   GKKSSSLQ--ELSPRLHLIQNRI-KARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
           G+   +L   +   RL  + ++     ++    +  +   P+                  
Sbjct: 16  GQLVEALDAPDFWIRLVRLLDQYVPFDSWV--ALLFSQGRPQVFAECPGADGGPDPLFQD 73

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
               +    D F           +++                R     +    I   V+L
Sbjct: 74  YLRGLYLL-DPFYIASRENPGSGLFRLADVAPECFEQTDYYQRYFRLNVVADEIQVNVQL 132

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKK---RSSAARN----- 173
              +   +           E +            ++   L    +     +         
Sbjct: 133 AGERTLCLSL-GSRQRFTPEQLAVLGLVRPWVAGLMRQRLAFEDEVLNSPAPPEPGWQGS 191

Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                      LT RE    +L   G +S+EIA KL +S  TV  +      KL   ++ 
Sbjct: 192 LEKVAEQMGTPLTARELEVGRLMLSGCSSKEIARKLAISAETVKVHRKHMYGKLGIKSQS 251

Query: 223 QA 224
           + 
Sbjct: 252 EL 253


>gi|330005638|ref|ZP_08305316.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
 gi|328536204|gb|EGF62585.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
          Length = 841

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  +   D              L+ERE   LQL  +G  ++EIA  L +S  TV  ++ 
Sbjct: 757 WAGKRAPADGTPFNSGSPDIHGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIK 816

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R QA+++A+    +
Sbjct: 817 NIYAKLKVNSRTQAMSRALEMKLL 840


>gi|325263734|ref|ZP_08130467.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
 gi|324030772|gb|EGB92054.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
          Length = 240

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A   LT RE   + L   G ++++IA +L +S HTV A++ +   KL   NR Q    
Sbjct: 179 ALSELTSREREIIHLVSIGMSNQQIAGQLQISEHTVKAHISNILKKLSLNNRTQLAIY 236


>gi|237794891|ref|YP_002862443.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4
           str. 657]
 gi|229263459|gb|ACQ54492.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4
           str. 657]
          Length = 865

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 40/70 (57%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            I + +++ +        LTERE   +++  +G ++++I ++L +S+ TV  ++ +   K
Sbjct: 785 FIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNISLATVKTHMINIYSK 844

Query: 216 LDAVNRIQAI 225
           L   NR+QA+
Sbjct: 845 LQVSNRVQAV 854


>gi|297200976|ref|ZP_06918373.1| two component LuxR family transcriptional regulator [Streptomyces
           sviceus ATCC 29083]
 gi|197712244|gb|EDY56278.1| two component LuxR family transcriptional regulator [Streptomyces
           sviceus ATCC 29083]
          Length = 233

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIA 195
             A    + A     ++++ F    + +          LT RE    ++   G ++EE+A
Sbjct: 114 AAAAGQTMLAPSIAARLVSWFRAQPEPQEAVMCPEVAELTPREREVTRMVALGMSTEEVA 173

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L +   TV  +L     KL   +R + ++ A R G I
Sbjct: 174 SELIIGEATVRTHLYRVRTKLGVRDRAELVSLAYRTGLI 212


>gi|168182481|ref|ZP_02617145.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf]
 gi|182674457|gb|EDT86418.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf]
          Length = 865

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 40/70 (57%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            I + +++ +        LTERE   +++  +G ++++I ++L +S+ TV  ++ +   K
Sbjct: 785 FIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNISLATVKTHMINIYSK 844

Query: 216 LDAVNRIQAI 225
           L   NR+QA+
Sbjct: 845 LQVSNRVQAV 854


>gi|218782824|ref|YP_002434142.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764208|gb|ACL06674.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 219

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              Q+I   +    + ++    +LT+RE    QL  +G T+++IA+ L +S  TV+ +  
Sbjct: 133 LSGQLIHSVINPDTREAADPLASLTQREKEVFQLVAEGNTNQQIADLLFISPKTVDKHRT 192

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KLD  +  +    A++ G I
Sbjct: 193 NLMKKLDLHSAREVSNFALKNGII 216


>gi|89054792|ref|YP_510243.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864341|gb|ABD55218.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 267

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 70/232 (30%), Gaps = 16/232 (6%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + +++++L                   +            +    L N   D  +     
Sbjct: 9   EMTTVEDLWSHHTKTLASYGFDRVFYGFNAFRGAGLYDNPEDALLLTNMPTDYVEAYVDG 68

Query: 69  IETYGDDFLFHFNSGLLPIIWQSI--QEETVIESSGQLSVRLEGG-LLPFAGIAFP---- 121
                   +      +    W+ +         S G+L++R         AG        
Sbjct: 69  GMFRDGVMMRWATENVGAASWRDVYMAMANDAPSKGELAMRAMNEKHDITAGYTISFPMA 128

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTE 176
           ++      G  +          + I   HG      C+      L+L    +   + LT 
Sbjct: 129 IKNANAGIGMAVKKG-MGQDEADAIWREHGEDIETICHVAHLCILQL--PATGQRKLLTP 185

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           R++  L+L  DG T  +IA  L  +V T+  +L  A   L      QA+ KA
Sbjct: 186 RQSEVLELVADGKTMADIALLLERNVATIEKHLRGARDALGVETTAQAVRKA 237


>gi|5051409|emb|CAB44989.1| NarL protein [Pseudomonas stutzeri]
          Length = 218

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY------ 154
           + R+    +    I F V          +           +  E +IE            
Sbjct: 71  TRRMRDADIDARIIMFTVSDEQSHVLEALRNGADGYLLKDMDAEQLIEQIRIAATGRMAL 130

Query: 155 -----QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                QV+ + + +  K S   +  +LT+RE   L+L   G +++ IA KLG++  TV  
Sbjct: 131 SPELTQVLAEAIRVRPKPSGQVQFSHLTKREKEVLRLIAKGQSNKMIARKLGITEGTVKV 190

Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231
           ++ +   KL   +R++A    +  
Sbjct: 191 HVKNLLHKLGLRSRVEAAVWVLEN 214


>gi|317057055|ref|YP_004105522.1| LuxR family two component transcriptional regulator [Ruminococcus
           albus 7]
 gi|315449324|gb|ADU22888.1| two component transcriptional regulator, LuxR family [Ruminococcus
           albus 7]
          Length = 211

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + +  LTERE   L++   G T++++AE+LG+S +TV +++ S   K    +R +   KA
Sbjct: 140 ADSSELTERELEILRIVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRTELAIKA 199

Query: 229 IRFGY 233
              G 
Sbjct: 200 RVLGI 204


>gi|158318837|ref|YP_001511345.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114242|gb|ABW16439.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 214

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
              AG    +      +  +       + A E ++        +                
Sbjct: 95  GLRAGACGFLPKDTRPDALLDAIRT--IAAGEALLSPGATRAVITRALSHPDAPAPERLA 152

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L+L   G +++EIA++L +S  T   ++G    K+ A +R+  +  A   G
Sbjct: 153 SLTAREREVLRLIAAGRSNQEIADELVVSPLTAKTHVGRILAKMGARDRVHLVIAAYEAG 212

Query: 233 Y 233
            
Sbjct: 213 L 213


>gi|17230648|ref|NP_487196.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132251|dbj|BAB74855.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G T++EIA  L ++  TV  ++ +   KL+  +R QA+  A++ 
Sbjct: 158 HPLTGRELEILALLAKGKTNQEIATVLYITPGTVRVHVHAILHKLEVSDRHQAVVVALQK 217

Query: 232 GYI 234
             I
Sbjct: 218 RLI 220


>gi|322373180|ref|ZP_08047716.1| DNA-binding response regulator [Streptococcus sp. C150]
 gi|321278222|gb|EFX55291.1| DNA-binding response regulator [Streptococcus sp. C150]
          Length = 200

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +  +     L++RE   L +   G T++EIAE L LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+  A    ++
Sbjct: 187 TEAVRIAKEKDWL 199


>gi|300698157|ref|YP_003748818.1| nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CFBP2957]
 gi|299074881|emb|CBJ54450.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CFBP2957]
          Length = 217

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGY 189
           +        A E +I       +++  F    K           LT RE   +Q    G 
Sbjct: 112 LVAGVRKAAAGEPVIAESMTA-KLVAHFRAPEKPAQPEAVPVERLTSRERDIVQGLVRGD 170

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +++EIA  L ++  TV  ++ +   KL+  +R+Q    A+  G 
Sbjct: 171 SNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214


>gi|326775725|ref|ZP_08234990.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656058|gb|EGE40904.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 213

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 50/109 (45%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    LA  V   A G      +    L  +  + A  LT RE   LQL 
Sbjct: 103 AGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQLV 162

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G ++ +I+++L LS  TV ++L     KL   +R  A+A A     I
Sbjct: 163 GEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211


>gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 229

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 155 QVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           Q  +  +E  +K               LTERE   L+L   G ++ EI +KL LS  TV 
Sbjct: 141 QAHSPKIEPEEKIIDPLPPKPTVELPELTEREKQVLELLAQGLSNVEIGQKLHLSPRTVE 200

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            Y+ S   K +  NR + +  A+    +
Sbjct: 201 KYVSSLLRKTETNNRAELVRFALDNDLV 228


>gi|182436087|ref|YP_001823806.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776712|ref|ZP_08235977.1| regulatory protein LuxR [Streptomyces cf. griseus XylebKG-1]
 gi|178464603|dbj|BAG19123.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326657045|gb|EGE41891.1| regulatory protein LuxR [Streptomyces cf. griseus XylebKG-1]
          Length = 330

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 15/227 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            K+   L  +  RL  +    +        ++      +    +      D  + +    
Sbjct: 119 IKRLEGLDAVRERLTELAELARTE-----CLSLLPGGAQSPDTLEASGPLDRRALERGVR 173

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           L   Y D F     +    + + +       ES    ++ L   ++       P+     
Sbjct: 174 LRSIYQDSF----RNDPSTLRYVNRLGLLGAESRTLPTLPLVMVVVDAEVALVPLDPDDG 229

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           + G +   S+  +    ++ E   A    +                LT +E   L L   
Sbjct: 230 RAGALELRSKGAVAVARLLFEQLWAAATPLGSAPRRD------GNGLTPQEDELLSLLAK 283

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+T    A +LG+S+ TV       T ++ A +R QA A+A R G+I
Sbjct: 284 GHTDATAARRLGVSLRTVRRMNAELTARMQARSRFQAGAEAARLGWI 330


>gi|163739745|ref|ZP_02147153.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107]
 gi|163743097|ref|ZP_02150479.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383514|gb|EDQ07901.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386975|gb|EDQ11336.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107]
          Length = 214

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  K       LT RE + L     G +++++A  L +SV TV  +  +   KL   + 
Sbjct: 135 SLKPKDDPDREALTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISST 194

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 195 AGLTRYALEHGVL 207


>gi|163786674|ref|ZP_02181122.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Flavobacteriales bacterium ALC-1]
 gi|159878534|gb|EDP72590.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Flavobacteriales bacterium ALC-1]
          Length = 136

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   LQ   +G +++EIAE L LS  T+  ++ +  VKLDA  R QA+ KA     I
Sbjct: 77  SNREYEVLQKIAEGLSNKEIAESLFLSESTIKTHVSNLLVKLDAKRRTQALKKAKSLQII 136


>gi|158333259|ref|YP_001514431.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158303500|gb|ABW25117.1| transcriptional regulator, LuxR family [Acaryochloris marina
           MBIC11017]
          Length = 227

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 8/179 (4%)

Query: 53  ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112
           +L    +   D    +     D          +P+   S+  +    +       L    
Sbjct: 51  DLQGLPVSFCDRYQAIGR-DQDITSQQMLRQHVPVKLCSLSTQKHPSNG---MDDLFRTY 106

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSE--FLMLANEVIIEAHGACYQVITDF--LELFKKRS 168
               G+  P+       G + F     +       ++     C  +   F  L    + S
Sbjct: 107 HIEHGVVAPILGSGQLLGGIYFLRHQGYPPFKTRDLLRISTLCQHLAVQFTTLRFNHQAS 166

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +    LT+RE   + L   G+T+ EI+  L +SV  V   L     K+   N+   +AK
Sbjct: 167 ANHAVLTDRELEIVDLVAQGFTNREISHYLHISVDGVKQRLKRLYRKVGVANQAALVAK 225


>gi|126735912|ref|ZP_01751656.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. CCS2]
 gi|126714469|gb|EBA11336.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. CCS2]
          Length = 210

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  K S     LT RE + L     G +++++A  L +SV TV  +  +   KL   + 
Sbjct: 133 SLQPKISDGRETLTSREQTILLELAQGQSNKDVANTLNISVRTVETHRKNIKRKLGISST 192

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 193 AGLTRYALEHGVL 205


>gi|302537227|ref|ZP_07289569.1| two-component system response regulator [Streptomyces sp. C]
 gi|302446122|gb|EFL17938.1| two-component system response regulator [Streptomyces sp. C]
          Length = 242

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 46/127 (36%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +   VR     +   +  +   +LA  V          V           
Sbjct: 92  EALHAGASGFLLKDVRRDDLVHAVRVVAAGESLLAPSVARRLIEEYTAVTARPAAPDPLA 151

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L   G G ++ EIA  L +S HTV +++G+   KL   +RIQA+  
Sbjct: 152 AERLGVLTARERETLLHLGRGLSNAEIAAALVVSEHTVKSHVGNVLSKLGLRDRIQAVIC 211

Query: 228 AIRFGYI 234
           A   G I
Sbjct: 212 AYETGLI 218


>gi|282861398|ref|ZP_06270463.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564056|gb|EFB69593.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 226

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----FKKRSSAARN----L 174
           L    +G+++  + F  L + V + A G           L      ++ S         L
Sbjct: 96  LAAGASGFLLKDATFPELLHGVRVVARGHALLAPEITQRLIGEFARQRISCPPDRSVDGL 155

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   G ++ +IA +L ++ HTV  ++     K+   +R QA+  A   G +
Sbjct: 156 TAREVEVLVLIARGLSNADIAARLSITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLV 215


>gi|182414312|ref|YP_001819378.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177841526|gb|ACB75778.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 212

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 12/136 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD-------- 159
           L         +         +    +       +  +  +       + I          
Sbjct: 77  LRREFGAVRVLVLSNYGSGDEVSAALQAGASGFIGKDTALAELLDAIRKIRAGDQVVPSE 136

Query: 160 -FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
               L  + +S   +L+ RE   L L G G +++EI   L +   TV  ++ +   KL  
Sbjct: 137 VARRLASRITS---HLSTRELEVLALIGRGLSNKEIGAALNVVESTVKVHVTNILSKLGV 193

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QA+   ++ G I
Sbjct: 194 ADRTQAVLAGVKRGII 209


>gi|159899994|ref|YP_001546241.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893033|gb|ABX06113.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 877

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 39/63 (61%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L+L   G+++ EIAE+L +++ TV  ++ +   KL+A +R +A+A A   
Sbjct: 814 EPLSEREIEVLKLLALGHSNAEIAERLVIAIGTVKRHVNNLLGKLNARSRTEAVAIARDE 873

Query: 232 GYI 234
           G +
Sbjct: 874 GLL 876


>gi|111023173|ref|YP_706145.1| response regulator [Rhodococcus jostii RHA1]
 gi|110822703|gb|ABG97987.1| response regulator [Rhodococcus jostii RHA1]
          Length = 219

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 3/123 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +G         + +  +   A                +    
Sbjct: 99  RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPQLDPE 155

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE+L +SV TV  +  +   K    NR      A R
Sbjct: 156 LDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHR 215

Query: 231 FGY 233
              
Sbjct: 216 RRI 218


>gi|21220639|ref|NP_626418.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256788218|ref|ZP_05526649.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289772111|ref|ZP_06531489.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|5578847|emb|CAB51249.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289702310|gb|EFD69739.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 227

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           G   + +       + R  A      +LT RE   L     G++++EIAE+L +S  TV 
Sbjct: 135 GLIARFLAQQDTTDEDRDPARAERLESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVK 194

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  A  KL A +R Q +  A   G +
Sbjct: 195 THVNRAMAKLGARDRAQLVVIAYESGLV 222


>gi|154707512|ref|YP_001424377.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|154356798|gb|ABS78260.1| response regulator [Coxiella burnetii Dugway 5J108-111]
          Length = 214

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 117 GIAFPVRLGF-HKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN 173
           G   P+RL      G++  +S+   L      + +        I + L L K  ++A   
Sbjct: 86  GDLLPMRLLEVGVRGFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSKTTTAATSP 145

Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L++RE   L L   G  +E IA++L ++  TVN++      KL   N ++ I  A++
Sbjct: 146 FKKLSDREMEVLLLLAKGKKAEVIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQ 205

Query: 231 FGYI 234
           +G +
Sbjct: 206 YGLV 209


>gi|284029937|ref|YP_003379868.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809230|gb|ADB31069.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++                LT+RE     L G G ++ EIA +L +SV TV  ++ +   
Sbjct: 138 RLLEQLRHRRSGPLPDKAALTDREREITMLVGRGLSNAEIATELFISVGTVKTHVANIQR 197

Query: 215 KLDAVNRIQAIAKAIRFG 232
           KL A +R+   A A + G
Sbjct: 198 KLSARSRVGIAAWAWQTG 215


>gi|206577986|ref|YP_002236599.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342]
 gi|288933581|ref|YP_003437640.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206567044|gb|ACI08820.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342]
 gi|288888310|gb|ADC56628.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22]
          Length = 217

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           V+   +      S+      LTERE   L     G T+ +IA  L +S +TV  +L +  
Sbjct: 137 VMHPAMYAADHASAPVENSPLTERECEILNELRCGATNLDIARALFISENTVRTHLYNVF 196

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   NR QA++ A   
Sbjct: 197 RKLSVKNRTQAVSWANEH 214


>gi|241554181|ref|YP_002979394.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240863487|gb|ACS61149.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 214

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 5/136 (3%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVIT 158
              ++ +           I+  V  G         +++ ++ A E +          V  
Sbjct: 79  PQARVVM--LSMHDSREYISSSVMHGAAGYILKDVSTDEIVSAIETVAGGGTYFSSGVFD 136

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             +   ++    +  LT RE   L L   G +++EIAE LG++  T   +  +   KL  
Sbjct: 137 ALM--GERAEEGSDPLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGI 194

Query: 219 VNRIQAIAKAIRFGYI 234
                 I  A+  G +
Sbjct: 195 ATTAGLIRYALDHGIV 210


>gi|254240101|ref|ZP_04933423.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192]
 gi|126193479|gb|EAZ57542.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192]
          Length = 901

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K + +    LTERE   + LA  G ++EEI ++L L++ TV  +L +   KL   NR 
Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889

Query: 223 QAIAKAIRFGYI 234
           QAI +A     +
Sbjct: 890 QAIRRARELSLL 901


>gi|146302391|ref|YP_001196982.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146156809|gb|ABQ07663.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 219

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   + L    Y+ +EI+EKL +SV+TV  +  +   KL+  N I  +  A++   
Sbjct: 157 LSPREIEIVTLICLEYSGKEISEKLFISVNTVETHRKNIMKKLNIKNTIGLVKYALKNNL 216

Query: 234 I 234
           I
Sbjct: 217 I 217


>gi|308176141|ref|YP_003915547.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743604|emb|CBT74576.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ------------VITDFLELFK 165
              PV L    +GY++          + II A  A +Q            +++   E ++
Sbjct: 91  YLVPV-LTAGASGYLV-----KDSEPDEIIRAIHAVHQGTAAISPSVSSDLVSAVREAYR 144

Query: 166 KRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             S   + L      T RE   L+L   G  + EI++ L +S  TV  ++    VKLD  
Sbjct: 145 DNSGDIQELVYDLGITNREFEILKLLAKGLNNPEISKTLAISETTVKTHMAKIFVKLDVR 204

Query: 220 NRIQAIAKAIRFGYI 234
           +R+QA+  A R G I
Sbjct: 205 DRVQALVAATRMGLI 219


>gi|229102538|ref|ZP_04233243.1| Two-component protein Kinase [Bacillus cereus Rock3-28]
 gi|228680860|gb|EEL35032.1| Two-component protein Kinase [Bacillus cereus Rock3-28]
          Length = 592

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEQFDEQNETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  SA  KL   N+ +A+ KA+  G I
Sbjct: 565 YASSAYTKLGVRNKEEAVQKALEIGII 591


>gi|77460927|ref|YP_350434.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens
           Pf0-1]
 gi|77384930|gb|ABA76443.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 911

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            +  A   C Q++  F +   +  +       L+ RE + L+L   G +++EI+++L +S
Sbjct: 818 QLNAATAFCQQLLEHFPQASVRSQAESVTTEQLSSRELAVLRLIAQGCSNQEISDQLFIS 877

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +HTV  +      KL    R QA+A+A   G +
Sbjct: 878 LHTVKTHASHINSKLGVERRTQAVARAKELGVL 910


>gi|296133351|ref|YP_003640598.1| two component transcriptional regulator, LuxR family [Thermincola
           sp. JR]
 gi|296031929|gb|ADG82697.1| two component transcriptional regulator, LuxR family [Thermincola
           potens JR]
          Length = 226

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L  +E   L L  +G T++EIA+ L LS +T+  Y+     KL+  NR +A A A+R   
Sbjct: 154 LNPQERRILGLIAEGKTNKEIAQILTLSNNTIKNYVSGILSKLNFSNRAEAAAYAVRNNL 213


>gi|239945707|ref|ZP_04697644.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239992177|ref|ZP_04712841.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291449166|ref|ZP_06588556.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291352113|gb|EFE79017.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 232

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177
               GYV+ +     L                GA   +I +FL          AR +TER
Sbjct: 114 AGAAGYVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNFLDRAKDGEDLPARAITER 173

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  +G++S+EIAE L +SV TV  +  +   KL   +R++    AIR G I
Sbjct: 174 EEEILKLVAEGHSSKEIAELLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 230


>gi|256378465|ref|YP_003102125.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922768|gb|ACU38279.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           V+  +    +   + A   LT RE   L+L   G ++ EIA +L L+  TV  ++G+   
Sbjct: 132 VLASYRRFGRPAPANAPGELTGRELDVLRLMARGASNREIAGRLCLAETTVKTHVGAIFG 191

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A +R  AI  A   G +
Sbjct: 192 KLGARDRAAAIVFAYDSGIV 211


>gi|239825761|ref|YP_002948385.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239806054|gb|ACS23119.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. WCH70]
          Length = 199

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+ E + LQL  +  T+ EI+E L +S  TV  ++ S   KLD  +R+ A+ KA++ G
Sbjct: 137 PLTKIELNILQLISEDKTNTEISELLNISRRTVEHHVSSILRKLDVDSRVGAVVKAMKLG 196

Query: 233 YI 234
            +
Sbjct: 197 IL 198


>gi|126665152|ref|ZP_01736135.1| ATP-dependent transcriptional regulator, MalT related, LuxR family
           protein [Marinobacter sp. ELB17]
 gi|126630522|gb|EBA01137.1| ATP-dependent transcriptional regulator, MalT related, LuxR family
           protein [Marinobacter sp. ELB17]
          Length = 970

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             A  ++ERE   L+    G +++E+A+KL +S+HTV  +      KL   +R QAI +A
Sbjct: 905 PLAEPISEREKGVLECIARGLSNQEVADKLHISLHTVKTHARRINAKLGVKSRTQAIVRA 964

Query: 229 IRFGYI 234
              G +
Sbjct: 965 RELGVL 970


>gi|51597079|ref|YP_071270.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808226|ref|YP_652142.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Antiqua]
 gi|108811507|ref|YP_647274.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|149365098|ref|ZP_01887133.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CA88-4125]
 gi|162418673|ref|YP_001607184.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Angola]
 gi|165926835|ref|ZP_02222667.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165935928|ref|ZP_02224498.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011211|ref|ZP_02232109.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212574|ref|ZP_02238609.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167422709|ref|ZP_02314462.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424621|ref|ZP_02316374.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467011|ref|ZP_02331715.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           FV-1]
 gi|170023626|ref|YP_001720131.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186896169|ref|YP_001873281.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930086|ref|YP_002347961.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CO92]
 gi|229838637|ref|ZP_04458796.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895703|ref|ZP_04510874.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides A]
 gi|229899203|ref|ZP_04514346.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901771|ref|ZP_04516893.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|294504789|ref|YP_003568851.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Z176003]
 gi|51590361|emb|CAH22001.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775155|gb|ABG17674.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|108780139|gb|ABG14197.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Antiqua]
 gi|115348697|emb|CAL21643.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CO92]
 gi|149291511|gb|EDM41585.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CA88-4125]
 gi|162351488|gb|ABX85436.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Angola]
 gi|165916073|gb|EDR34680.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921186|gb|EDR38410.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989889|gb|EDR42190.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206505|gb|EDR50985.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166958416|gb|EDR55437.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167056503|gb|EDR66272.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169750160|gb|ACA67678.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186699195|gb|ACC89824.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681700|gb|EEO77794.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|229687605|gb|EEO79678.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695003|gb|EEO85050.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701509|gb|EEO89537.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides A]
 gi|262362851|gb|ACY59572.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           D106004]
 gi|262366775|gb|ACY63332.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           D182038]
 gi|294355248|gb|ADE65589.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Z176003]
 gi|320014400|gb|ADV97971.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 209

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV-------ITDFLELFKK 166
           I   V         +I              E+++E      +        +  +L    +
Sbjct: 82  IILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHE 141

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL+  +R+ A  
Sbjct: 142 QVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATI 201

Query: 227 KAIRF 231
             +  
Sbjct: 202 MYLEN 206


>gi|268317984|ref|YP_003291703.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262335518|gb|ACY49315.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 218

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +    E  +        LT+RE   L L  +GYTS EIAE+L +S  TV  +  +   KL
Sbjct: 136 LLAQAEAPQDLRDPYETLTDRERQILHLTAEGYTSREIAERLFISPRTVEKHRENLMAKL 195

Query: 217 DAVNRIQAIAKAIRFGYI 234
           D  ++ + I  A++ G +
Sbjct: 196 DIHSQAELIHYAVQRGLV 213


>gi|205353364|ref|YP_002227165.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273145|emb|CAR38106.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628455|gb|EGE34798.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 207

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++E            
Sbjct: 63  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEGIRKGANGGKVF 122

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 123 SDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 182

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL+  +R+ A   
Sbjct: 183 NLLRKLNVRSRVAATIL 199


>gi|329946695|ref|ZP_08294107.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526506|gb|EGF53519.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 254

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT RE + L L   G ++ +I E+L ++  TV +++ +   K    NR++ + 
Sbjct: 184 PAGPYDPLTGREEAVLALVCQGLSNAQIGERLHVAESTVKSHVKTILGKTGCHNRVELVI 243

Query: 227 KAIRFGYI 234
            A+  G +
Sbjct: 244 YALTTGLV 251


>gi|295105926|emb|CBL03469.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 214

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-----LFKKRSSAAR 172
           + + +R G         TSE L+ A   +       +  +   L        ++   + +
Sbjct: 91  LFYTLRGGAAGYVLKNSTSEELLSAVHAVAGGGSYIHPKMAALLTKQLVGAGEEEDRSYQ 150

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   LQL   GYT++EI+E++ LSV TV A+      KL    R   ++ A+   
Sbjct: 151 QLSNRELEILQLLAKGYTNKEISEQVYLSVKTVEAHRSKIYKKLGFKTRADLVSYALEHK 210

Query: 233 YI 234
            +
Sbjct: 211 LL 212


>gi|294055008|ref|YP_003548666.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614341|gb|ADE54496.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 238

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++    EL     +  +  +LT RE   +QL  + Y+++EIA KLG+SV T + +
Sbjct: 141 YFSPRIVEAMRELMVNGGQDDSLDSLTTREREIVQLIAESYSNKEIAAKLGMSVRTADTH 200

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
             +   KL+  +       AI    +
Sbjct: 201 RTNIMKKLNLHDVAALTRWAIANKLV 226


>gi|225020339|ref|ZP_03709531.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946728|gb|EEG27937.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 233

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G ++ EIA+ L +S+ TV  ++G    K  + +R+ A+  A   
Sbjct: 164 EPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSRDRVHAVLYAFDR 223

Query: 232 GYI 234
           G I
Sbjct: 224 GVI 226


>gi|322390963|ref|ZP_08064469.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321142338|gb|EFX37810.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 199

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           +++   H           EL +   +    L+ +E + L+    G +++EIA++L LS  
Sbjct: 109 DLMATLHTVLAGQKEYSPELMEGILTHPNPLSPQEKAVLKEVAKGASNQEIADRLFLSNG 168

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 169 TIRNYMSTILTKLDAENRTEAAKIAHEKGWL 199


>gi|320106060|ref|YP_004181650.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924581|gb|ADV81656.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 207

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196
             + E +I A     + +     +   R +    A  LT RE+  L     G ++ EIAE
Sbjct: 107 DASGEELINAIQNVDRDLRYLPRVALDRLAERMPAVELTPRESEVLICITQGRSNREIAE 166

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L ++  TV  ++ S   K+ A +R QA   A++ G +
Sbjct: 167 QLRIAEKTVRIHVSSVLDKMGARDRTQATIYALQRGLV 204


>gi|253996413|ref|YP_003048477.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983092|gb|ACT47950.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Methylotenera mobilis JLW8]
          Length = 274

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           I+      + +     L +    +  +L+ERE   +     G T++EI   L +S +TV 
Sbjct: 171 IDYILRKIKPLEQLDMLAEADGVSLSSLSEREIEVISWIKAGKTNQEIGMILSISQNTVK 230

Query: 207 AYLGSATVKLDAVNRIQAIAK 227
           ++L     KL+   R QA+A 
Sbjct: 231 SHLKRIFQKLNIGRRAQAVAL 251


>gi|225875065|ref|YP_002756524.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225792729|gb|ACO32819.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 213

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY+I  +    +  E I   H     +     +   +R      LT RET  L++ 
Sbjct: 103 AGARGYLIKDTTQEEI-LEAIAAVHAGSLHLPRHIAQRISERIGRQE-LTRRETEILEML 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T++EI    G+S +T   ++ S   KL+  +R +A   AI  G I
Sbjct: 161 AKGLTNKEIGRVFGISENTARNHVNSIIQKLEVSDRTEAATTAILRGII 209


>gi|209964999|ref|YP_002297914.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
 gi|209958465|gb|ACI99101.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
          Length = 214

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                LT+R+   L+   +G ++++IA +LGLS  TV  ++ +    L   NR QA+ 
Sbjct: 150 PGMPALTQRQRDVLRCLREGKSNKQIAYELGLSEGTVKIHVTAVMRSLGVRNRTQAVI 207


>gi|297197337|ref|ZP_06914734.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714865|gb|EDY58899.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 227

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 133 IFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDG 188
           +      + A + ++   A             L  + ++A     LT RE   +    +G
Sbjct: 114 LLAGIRTVAAGDSLLSPGATRTLITRFLAAPGLGTRLAAADDLTGLTGREREVMAWVAEG 173

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +++E+IAEKL +S  TV  ++  A  KL A +R Q +  A + G +
Sbjct: 174 HSNEKIAEKLFVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSGLV 219


>gi|320161029|ref|YP_004174253.1| putative two-component response regulator [Anaerolinea thermophila
           UNI-1]
 gi|319994882|dbj|BAJ63653.1| putative two-component response regulator [Anaerolinea thermophila
           UNI-1]
          Length = 356

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +   +S    +LTERE   L L   G T+ EIAE L +S +TV  +L S   KL+   R 
Sbjct: 286 IMGGKSDDLSSLTEREREVLLLLAQGLTNREIAEALVISNNTVKRHLKSIFSKLNIHTRS 345

Query: 223 QAIAK 227
            A+AK
Sbjct: 346 AAVAK 350


>gi|298482318|ref|ZP_07000505.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
 gi|298271605|gb|EFI13179.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
          Length = 255

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            + NLT RE   L+L   G  S+EIA+KL +S+HTVN +  +   KL   N I+AI    
Sbjct: 190 PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQ 249

Query: 230 RFGYI 234
             G +
Sbjct: 250 ESGLL 254


>gi|229592530|ref|YP_002874649.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229364396|emb|CAY52185.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 830

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            + I E       ++++     +  +  A    L++RE   LQL   G ++ EIA++L +
Sbjct: 736 QQAIRELRLRSPGLLSELGMEPQASTPGAVDNPLSQRELEVLQLIALGNSNLEIADRLFI 795

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           S+HTV  +      KL    R QA+AKA   G 
Sbjct: 796 SLHTVKTHARRIHSKLGVERRTQAVAKAKALGL 828


>gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 246

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 37/106 (34%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +       +E        +         ++     +    S    +LT RE S L L   
Sbjct: 139 RRAATRQEAEEGTPDITALAGQIARIENMLKGKTGINLSPSPIKIDLTPREQSVLDLVAQ 198

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G  ++EIA +L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 199 GLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 244


>gi|170756351|ref|YP_001781185.1| LuxR family transcriptional regulator [Clostridium botulinum B1
           str. Okra]
 gi|169121563|gb|ACA45399.1| transcriptional regulator, LuxR family [Clostridium botulinum B1
           str. Okra]
          Length = 865

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 41/72 (56%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            I + +++ +        LTERE   +++  +G ++++I ++L +S+ TV  ++ +   K
Sbjct: 785 FIKNLIDIMEPEKVKGELLTEREKEVMEILFEGSSNKQIGKRLNISLATVKTHMINIYSK 844

Query: 216 LDAVNRIQAIAK 227
           L   NR+QA+ K
Sbjct: 845 LQVSNRVQAVEK 856


>gi|157412510|ref|YP_001483376.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9215]
 gi|254526652|ref|ZP_05138704.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9202]
 gi|157387085|gb|ABV49790.1| Regulatory protein, LuxR family [Prochlorococcus marinus str. MIT
           9215]
 gi|221538076|gb|EEE40529.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9202]
          Length = 92

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   + L  DG T++EIA KL +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 15  GLSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNG 74

Query: 233 YIC 235
            IC
Sbjct: 75  KIC 77


>gi|123967708|ref|YP_001008566.1| LuxR family regulatory protein [Prochlorococcus marinus str.
           AS9601]
 gi|126695511|ref|YP_001090397.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9301]
 gi|123197818|gb|ABM69459.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. AS9601]
 gi|126542554|gb|ABO16796.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9301]
          Length = 92

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   + L  DG T++EIA KL +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 15  GLSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNG 74

Query: 233 YIC 235
            IC
Sbjct: 75  KIC 77


>gi|75910055|ref|YP_324351.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75703780|gb|ABA23456.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 227

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G T++EIA  L ++  TV  ++ +   KL+  +R QA+  A++ 
Sbjct: 158 HPLTGRELEILSLLAKGKTNQEIATALYITPGTVRVHVHAILHKLEVSDRHQAVVVALQK 217

Query: 232 GYI 234
             I
Sbjct: 218 RLI 220


>gi|326381419|ref|ZP_08203113.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326199666|gb|EGD56846.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 209

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  +      +   + +++A      V+                LT+RE   L   G G 
Sbjct: 104 GAELVAGVHRVADGDAVLDA-AVTRVVVDAMRARPADPGPDLSELTDREVQVLGGLGAGL 162

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ +IA +L +   TV  ++    +KL   +R+QA   A R G
Sbjct: 163 SNAQIAGRLTIGEATVKTHVSRVLMKLGVQSRVQAAVLAARSG 205


>gi|298241116|ref|ZP_06964923.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554170|gb|EFH88034.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 938

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ RE   L L   G ++++IAE L ++  TV  ++     KL+A NR QA+A+A
Sbjct: 869 PLLDPLSAREQDVLHLLARGASNQDIAEALVVTPGTVKHHITHILSKLEATNRTQAVARA 928

Query: 229 IRFGYI 234
              G +
Sbjct: 929 QALGLL 934


>gi|319441809|ref|ZP_07990965.1| putative NarL family two-component response regulator
           [Corynebacterium variabile DSM 44702]
          Length = 228

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +    A R+LT RE   L+    G +++EIA  L +S  TV  ++     KL   +R+Q
Sbjct: 158 EQAALKALRSLTPREHEILEQIATGRSNQEIAGTLFISEETVKTHVRKVLQKLSLRDRVQ 217

Query: 224 AIAKAIRFG 232
           A+  A   G
Sbjct: 218 AVVFAYENG 226


>gi|311895697|dbj|BAJ28105.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 41/105 (39%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  I T           +        V T       + + A  +LT RET   +L   G 
Sbjct: 114 GAAIRTVHTGEAVVAPRLLTRLISTYVRTPATPAVPRPAPAPADLTPRETEVWRLIATGL 173

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ IA  L LS  TV  ++ +   KLD  +R QA+  A   G +
Sbjct: 174 DNDAIAAALDLSRSTVKNHITALFAKLDVRDRAQAVIAAYESGLV 218


>gi|226355186|ref|YP_002784926.1| LuxR family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226317176|gb|ACO45172.1| putative Transcriptional regulator, LuxR family [Deinococcus
           deserti VCD115]
          Length = 762

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 6/163 (3%)

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            L +     +    +   + ++       S  +         + F   +           
Sbjct: 594 LLRYVLLHQMAFHARDAGQLSLAARMVGCSEAMRASTGEPWDVCFAPHVRRLDTALRTAM 653

Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            E   +  +      + +       ++ + ++     +     LT RE   L+L   G +
Sbjct: 654 GERYEVCRQEGSALRLEDLVPDVAAMLENAVQTTYAETRVT-PLTGREQDVLRLLAQGIS 712

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            + IA++L +S  TV+ ++ S   KL   NR++    A+R G 
Sbjct: 713 DKRIAQQLNISAATVSKHVSSMLSKLGVHNRVELARWALRNGL 755


>gi|319940792|ref|ZP_08015131.1| NarL protein [Sutterella wadsworthensis 3_1_45B]
 gi|319805674|gb|EFW02455.1| NarL protein [Sutterella wadsworthensis 3_1_45B]
          Length = 220

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L     G +++EIA  L L+  TV  ++ S   KL+  +R+QA   AI    
Sbjct: 157 LTRRERQTLAWLARGVSNKEIARALNLAESTVKVHVQSILRKLNLSSRVQAAIYAIEHKI 216


>gi|290511352|ref|ZP_06550721.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289776345|gb|EFD84344.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 217

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           V+   +      S+      LTERE   L     G T+ +IA  L +S +TV  +L +  
Sbjct: 137 VMHPAMYAADHASAPVENSPLTERECEILNELRCGATNLDIARALFISENTVRTHLYNVF 196

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   NR QA++ A   
Sbjct: 197 RKLSVKNRTQAVSWANEH 214


>gi|254519325|ref|ZP_05131381.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913074|gb|EEH98275.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE + L     G  ++EIAEKL LS  TV  Y+ S   K++  +R+QA   AIR   
Sbjct: 158 LTNRELNILYEISKGLKNKEIAEKLFLSEKTVKNYITSIFKKIEVEDRVQATIYAIRNNI 217


>gi|197658985|emb|CAR47858.1| putative DNA binding response regulator [Rhodococcus sp. PY11]
          Length = 222

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+LA  G T+ +IA KL +SV TV  +L +   KLDA +R  A+A+A+R G 
Sbjct: 161 LTPRELDVLRLAATGLTTSQIAGKLHVSVPTVKTHLRNTYDKLDASDRTAAVAQALRLGL 220

Query: 234 I 234
           +
Sbjct: 221 L 221


>gi|296389855|ref|ZP_06879330.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110448|ref|ZP_07796333.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882835|gb|EFQ41429.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 856

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K + +    LTERE   + LA  G ++EEI ++L L++ TV  +L +   KL   NR 
Sbjct: 785 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 844

Query: 223 QAIAKAIRFGYI 234
           QAI +A     +
Sbjct: 845 QAIRRARELSLL 856


>gi|85711562|ref|ZP_01042620.1| two-component system regulatory protein [Idiomarina baltica OS145]
 gi|85694714|gb|EAQ32654.1| two-component system regulatory protein [Idiomarina baltica OS145]
          Length = 212

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT++E + L+L   G +++EIA+ L  S  T+   + S   KL   +R +A+ KAI  
Sbjct: 150 EPLTDKELAVLRLMAAGLSNQEIADSLFKSTGTIKNQVSSIMAKLGVHDRTRAVLKAIDL 209

Query: 232 GYI 234
           G +
Sbjct: 210 GVL 212


>gi|297196575|ref|ZP_06913973.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297153289|gb|EDY67145.2| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|302607736|emb|CBW45649.1| response regulator [Streptomyces pristinaespiralis]
          Length = 249

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L L   G ++ EIA+ L LS HTV  ++ +   KL   NR+     A 
Sbjct: 185 PPEQLTGRECQILDLVARGLSNTEIAQSLTLSEHTVKTHVQNLLNKLRLRNRVHVAIYAF 244

Query: 230 RFGY 233
             G 
Sbjct: 245 ETGL 248


>gi|302865544|ref|YP_003834181.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302568403|gb|ADL44605.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 216

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  Q++  +      R  AA  LTERE   L+L   G ++ EIA +L + V TV  ++G
Sbjct: 130 AAIRQLVDTYGRRDGDRLRAA-RLTEREAEVLRLMAAGLSNPEIAARLVVGVETVKTHVG 188

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R QA+  A   G++
Sbjct: 189 NVLAKLGVRDRTQAVVAAYESGFV 212


>gi|78062060|ref|YP_371968.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77969945|gb|ABB11324.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 889

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           ++            ++               L    E++     A    +    +  ++R
Sbjct: 761 VQHRQGHTRLALRTLQGVRETASAGGCRRALLDEGAELVALLDQAPDAEMPHTAQASEQR 820

Query: 168 SSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           S  A     L++RE   L+L   G ++ EI+EKL LS +TV  +L +  +KLD  NR QA
Sbjct: 821 SPTAAWYGALSQREQEILRLLCSGASNREISEKLFLSENTVKFHLKNVYLKLDVKNRAQA 880

Query: 225 IAKA 228
           I KA
Sbjct: 881 ILKA 884


>gi|312138632|ref|YP_004005968.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311887971|emb|CBH47283.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 205

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              L+++       L+ RE   L L   G ++  IA++L +S  TV ++L  A  KL   
Sbjct: 130 AQRLYRRMQQPRVELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVD 189

Query: 220 NRIQAIAKAIRFGYI 234
           +R  A+A A   G I
Sbjct: 190 SRTAAVAAARERGLI 204


>gi|288563091|pdb|3KLN|A Chain A, Vibrio Cholerae Vpst
 gi|288563092|pdb|3KLN|B Chain B, Vibrio Cholerae Vpst
 gi|288563093|pdb|3KLN|C Chain C, Vibrio Cholerae Vpst
 gi|288563094|pdb|3KLN|D Chain D, Vibrio Cholerae Vpst
 gi|288563095|pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563096|pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563097|pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563098|pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp
          Length = 225

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            + +        + I  +       +S     LT+RE   ++L G G ++ EIA+KL +S
Sbjct: 128 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 187

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +TV  +L +   K++A NR+QA+  A
Sbjct: 188 ENTVKTHLHNVFKKINAKNRLQALIWA 214


>gi|315502094|ref|YP_004080981.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315408713|gb|ADU06830.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 216

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  Q++  +      R  AA  LTERE   L+L   G ++ EIA +L + V TV  ++G
Sbjct: 130 AAIRQLVDTYGRRDGDRLRAA-RLTEREAEVLRLMAAGLSNPEIAARLVVGVETVKTHVG 188

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R QA+  A   G++
Sbjct: 189 NVLAKLGVRDRTQAVVAAYESGFV 212


>gi|261212992|ref|ZP_05927276.1| transcriptional regulator VpsT [Vibrio sp. RC341]
 gi|260838057|gb|EEX64734.1| transcriptional regulator VpsT [Vibrio sp. RC341]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            + +        + I  +       +S     LT+RE   ++L G G ++ EIA+KL +S
Sbjct: 127 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 186

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +TV  +L +   K++A NR+QA+  A
Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|256380511|ref|YP_003104171.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924814|gb|ACU40325.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 216

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +          ++  ++   L     +A  V         VI           ++++ ++
Sbjct: 55  LDVHMPDGGGAEVLRQVRKALPEVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSQELV 114

Query: 148 EA--------HGACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSE 192
            A             ++    L+ F  R  AA         LT RE   L+L   GY  +
Sbjct: 115 RAVVRVAEGDAVFSPRLAGFVLDAFADRPGAAPISDPELDLLTPRERDVLRLLARGYAYK 174

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L +SV TV  ++ S   K    NR +    A     +
Sbjct: 175 EIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 216


>gi|238061007|ref|ZP_04605716.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882818|gb|EEP71646.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 231

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 18/161 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +   +         +A  V         +I           ++ + + 
Sbjct: 71  LDVHMPDGGGRAVLESMRRTHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELA 130

Query: 148 EAHGA--------CYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193
            A             ++    L+ F  R            LT RE   L+L   GY  +E
Sbjct: 131 AAIRRVADGDAVFSPRLAGFVLDAFAARPDAPVADPELDQLTNREREVLRLLARGYAYKE 190

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA++L +S+ TV  ++ +   KL   NR +    A     +
Sbjct: 191 IAKELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 231


>gi|229505909|ref|ZP_04395418.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286]
 gi|229510237|ref|ZP_04399717.1| transcriptional regulator VpsT [Vibrio cholerae B33]
 gi|229514364|ref|ZP_04403825.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21]
 gi|229517633|ref|ZP_04407078.1| transcriptional regulator VpsT [Vibrio cholerae RC9]
 gi|229522476|ref|ZP_04411892.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80]
 gi|229526498|ref|ZP_04415902.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426]
 gi|229528149|ref|ZP_04417540.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)]
 gi|229605441|ref|YP_002876145.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236]
 gi|229334511|gb|EEN99996.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)]
 gi|229336656|gb|EEO01674.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426]
 gi|229340461|gb|EEO05467.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80]
 gi|229345669|gb|EEO10642.1| transcriptional regulator VpsT [Vibrio cholerae RC9]
 gi|229348344|gb|EEO13302.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21]
 gi|229352682|gb|EEO17622.1| transcriptional regulator VpsT [Vibrio cholerae B33]
 gi|229356260|gb|EEO21178.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286]
 gi|229371927|gb|ACQ62349.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236]
          Length = 214

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            + +        + I  +       +S     LT+RE   ++L G G ++ EIA+KL +S
Sbjct: 117 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 176

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +TV  +L +   K++A NR+QA+  A
Sbjct: 177 ENTVKTHLHNVFKKINAKNRLQALIWA 203


>gi|254284578|ref|ZP_04959545.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|150425363|gb|EDN17139.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            + +        + I  +       +S     LT+RE   ++L G G ++ EIA+KL +S
Sbjct: 127 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 186

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +TV  +L +   K++A NR+QA+  A
Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|297579999|ref|ZP_06941926.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535645|gb|EFH74479.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|327485927|gb|AEA80333.1| Transcriptional regulator VpsT [Vibrio cholerae LMA3894-4]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            + +        + I  +       +S     LT+RE   ++L G G ++ EIA+KL +S
Sbjct: 127 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 186

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +TV  +L +   K++A NR+QA+  A
Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|15601705|ref|NP_233336.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121586693|ref|ZP_01676477.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121726414|ref|ZP_01679688.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147672305|ref|YP_001215128.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153212168|ref|ZP_01947963.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153801409|ref|ZP_01955995.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153818303|ref|ZP_01970970.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153821011|ref|ZP_01973678.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153824729|ref|ZP_01977396.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|153827751|ref|ZP_01980418.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|227812518|ref|YP_002812528.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|254224744|ref|ZP_04918360.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|254850118|ref|ZP_05239468.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746307|ref|ZP_05420254.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101]
 gi|262158188|ref|ZP_06029306.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1]
 gi|262169213|ref|ZP_06036906.1| transcriptional regulator VpsT [Vibrio cholerae RC27]
 gi|262191930|ref|ZP_06050097.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93]
 gi|9658390|gb|AAF96848.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549121|gb|EAX59156.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121631162|gb|EAX63537.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124116720|gb|EAY35540.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124123075|gb|EAY41818.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|125622807|gb|EAZ51125.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|126511116|gb|EAZ73710.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126521385|gb|EAZ78608.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146314688|gb|ABQ19228.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|148876596|gb|EDL74731.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|149741685|gb|EDM55714.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|227011660|gb|ACP07871.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227015599|gb|ACP11808.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|254845823|gb|EET24237.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736061|gb|EET91459.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101]
 gi|262022494|gb|EEY41202.1| transcriptional regulator VpsT [Vibrio cholerae RC27]
 gi|262030066|gb|EEY48712.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1]
 gi|262032164|gb|EEY50735.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            + +        + I  +       +S     LT+RE   ++L G G ++ EIA+KL +S
Sbjct: 127 QDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVS 186

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +TV  +L +   K++A NR+QA+  A
Sbjct: 187 ENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|328551897|gb|AEB22389.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
          Length = 214

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + +++    LT RE    +   +G +++ IA  L L+  TV  Y+     KL+  NR +
Sbjct: 146 EEPKTNLTEILTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVSNRTE 205

Query: 224 AIAK 227
               
Sbjct: 206 LTLY 209


>gi|291442172|ref|ZP_06581562.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345067|gb|EFE72023.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              +  +  ++ + + ++                  +  K +   + LTERET  L L  
Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFAKQRPAVRGKPALRLKGLTERETEVLTLVA 172

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EIA+ L L+  TV  ++     KLD  +R QA+  A   G +
Sbjct: 173 RGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|257067250|ref|YP_003153505.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558068|gb|ACU83915.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 213

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 9/139 (6%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
           + ++         +A             +              E +I A G      +  
Sbjct: 74  TRKVRARHPDVQVLAVTTFDAEADIVGALEAGATGYVLKDSPTEALIAAVGEAAAGRSVL 133

Query: 161 -----LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                  L  + +S A  L+ RE   L+    G T+ E+A++L +S  TV  +L     K
Sbjct: 134 SPEVQQRLVARMTSPATALSPREAEILEALATGATNREVAKRLFISESTVKTHLVHLYEK 193

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R  A+  A     I
Sbjct: 194 LGVDSRTAALRVARERRLI 212


>gi|296131165|ref|YP_003638415.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022980|gb|ADG76216.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 254

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +     A  LT RE    +L   G ++ E AE+L L   TV +++ S   KL   +R+Q
Sbjct: 154 MEATDGPAE-LTARERDVFRLLVQGLSTAEAAERLTLGDSTVKSHVQSLYRKLGVRDRVQ 212

Query: 224 AIAKAIRFGYI 234
           A+  A   G +
Sbjct: 213 AVIYAYEHGLV 223


>gi|297561045|ref|YP_003680019.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845493|gb|ADH67513.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 247

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195
            ++A    + A     ++I++F  L +     AR L   T+RE   L L   G ++ E+A
Sbjct: 133 TVVAAGDALLAPSVTRRLISEFARLPEPGRPPARALDGVTDREVEVLGLIARGLSNTELA 192

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E L LS+ TV  ++G    KL A +R Q +  A   G +
Sbjct: 193 EHLHLSLATVKTHIGRLRAKLGARDRAQLVITAYETGLV 231


>gi|296139134|ref|YP_003646377.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027268|gb|ADG78038.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 222

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 10/130 (7%)

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC----------YQVITDFLELF 164
                    L     G+V+  S    L   V + A G             Q      +  
Sbjct: 89  RDDDLLSAALRAGVAGFVLKDSPAEELIRAVRLVAAGEAVLDPAVTGRVLQTYRAARQPA 148

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             R+ A   LT RE   L L G G ++++IA +L +S+ TV +++GS   KL   NR +A
Sbjct: 149 TTRAGAVDPLTAREVDVLGLVGRGLSNDDIAAELVISIVTVKSHIGSIFTKLGVRNRAEA 208

Query: 225 IAKAIRFGYI 234
           I  A   G +
Sbjct: 209 IVWAFDNGVV 218


>gi|225022693|ref|ZP_03711885.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682229|ref|ZP_07405033.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224944601|gb|EEG25810.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658702|gb|EFM48205.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 223

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                S A   LT RET  L+L   G T++EIA+   +S+ TV  ++    +K ++ +R+
Sbjct: 141 AAPTPSPAVAELTPRETVILRLIALGLTNQEIADHEYVSMATVKTHVRHILMKTNSRDRV 200

Query: 223 QAIAKAIRFGYI 234
            A+  A R G +
Sbjct: 201 HAVLFAYRTGVV 212


>gi|171778727|ref|ZP_02919823.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282684|gb|EDT48108.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 198

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S    L+ +E   LQL   G ++++IA+ L LS  TV  Y  S   KL A NR
Sbjct: 126 ELMESMISQDNPLSPQEKRILQLISLGKSNQDIADTLYLSNGTVRNYTSSIFNKLSANNR 185

Query: 222 IQAIAKAIRFGYI 234
           ++A   A   G++
Sbjct: 186 VEAARIAKDKGWL 198


>gi|111023055|ref|YP_706027.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822585|gb|ABG97869.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 208

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  S    +   V   A G           L ++       LT RE   L L
Sbjct: 98  DAGAIGYLLKDSTPQEIFAAVRGAAAGQSVLSPPVASRLLQQMQRPEEALTPREAELLTL 157

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +G T++E+ + L +S  TV  +L     KL    R  A++ A+R 
Sbjct: 158 MAEGMTNKELGKALFISEATVKTHLAHIYAKLGVDTRAAAVSVALRR 204


>gi|305680025|ref|ZP_07402835.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660645|gb|EFM50142.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 232

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G ++ EIA+ L +S+ TV  ++G    K  + +R+ A+  A   
Sbjct: 163 EPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSRDRVHAVLYAFDR 222

Query: 232 GYI 234
           G I
Sbjct: 223 GVI 225


>gi|291539797|emb|CBL12908.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis XB6B4]
          Length = 215

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
               SS   +LT RE   L++   G  ++EIAE L +S  TV  ++ +   K+   +R 
Sbjct: 141 RDSDSSKIESLTRRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRT 199


>gi|284030307|ref|YP_003380238.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809600|gb|ADB31439.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 213

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA----RNLTERET 179
           L     GY+   +  + +   +   A G           L    S A       LT RET
Sbjct: 97  LRAGARGYLTKDAGRVEIGAALRATAAGQSTFDPEVARRLVAGLSPAPAGSKDGLTARET 156

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             L+L   G ++ EIA  L +   TV  ++ +   K+ A +R +A+  A R G 
Sbjct: 157 EVLRLIAQGLSNGEIAGLLFIGEATVKTHINNTFAKIGARHRAEAVRYAYRHGI 210


>gi|118468464|ref|YP_885258.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169751|gb|ABK70647.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 215

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              L  E  + A      +        +        LT RE   L+L  +GY++ EIA  
Sbjct: 117 RATLRGEPFLYAGAITALIRDFLHRARQGGEPPDSILTPREEEVLKLIAEGYSTREIAAT 176

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S  TV+ +  +   KL   +R+     AIR G I
Sbjct: 177 LTISAKTVDRHRTNILAKLGLRDRLALTRYAIRAGLI 213


>gi|116255424|ref|YP_771257.1| putative two-component response regulator transcriptional regulator
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115260072|emb|CAK03171.1| putative two-component response regulator transcriptional regulator
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 210

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           E I  A     + + +   L  +R+  A  L+ RE    +    G  +++IA  LG+S  
Sbjct: 112 EAIDRALIQYERQLAEHDRLQAQRTLVA-GLSPREAEVFRFLIRGRLNKQIAYALGISER 170

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +      KL   +  +A++ A   G I
Sbjct: 171 TVKVHRHQVMDKLGVRSLAEAVSIAANIGLI 201


>gi|159898988|ref|YP_001545235.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892027|gb|ABX05107.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 860

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           L L   +I          +   L    +  +    +T RE   L+    G  +  IAE L
Sbjct: 764 LDLQAGLIPLLQQLPSSPLVLRLLHHNRLETLDLAITPREHEILRYLAAGLGNRAIAEAL 823

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  T+  ++ +  +KLD  NR  AI KA   G I
Sbjct: 824 VIAESTLKRHISNLYLKLDVHNRTAAIVKAREQGLI 859


>gi|297626942|ref|YP_003688705.1| Two-component system, regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922707|emb|CBL57284.1| Two-component system, regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 219

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 20/151 (13%)

Query: 103 QLSVRLEGGLLPFAGIAFPVR-----LGFHKNGYVIFTSEFLMLA------NEVIIEAHG 151
           +      G   P   +          L   + G   F  +             V   AH 
Sbjct: 67  RRIREARGPEGPRILVLTTFDQDENVLAAMRAGANGFLGKGAGPDELAEGIRRVAAGAHA 126

Query: 152 ACYQVITDFLE---------LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                I   +              ++     LT RE   ++L  +G  + EI  ++ +S 
Sbjct: 127 LSDNAIGALVSHVSDPHAVPPDPDKAKLFEGLTPRELEVVRLVVEGLDNAEIGRRVFISP 186

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            T   ++  A  K+ A +R Q ++ A++ G 
Sbjct: 187 FTAKTHVNRAMAKVGARDRAQLVSLAVQAGI 217


>gi|254464296|ref|ZP_05077707.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
 gi|206685204|gb|EDZ45686.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
          Length = 251

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 70/229 (30%), Gaps = 12/229 (5%)

Query: 11  SSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNIL 68
           + S +EL    +  +                  +           L N+  +  +     
Sbjct: 13  AQSTEELWCEHVKQMA-AFGFDRLIYGHTRFRTETSLGDPEDFVILSNHPNEYLNGFLKE 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIE---SSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   L           W+ +++           +        L   AG        
Sbjct: 72  GLYLSAPMLRWALENEGAGSWRIVEDMAATGTLTPEARKVHEFNQKLDMTAGYTISFHSV 131

Query: 126 FHKN-GYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERET 179
            ++  G +   ++        +++    G    ++ +   L           R+LT+R+ 
Sbjct: 132 SNRYKGAISLAAQPGMSQDDVDMLWAERGEDIVLMNNVAHLKILTLPYASPKRSLTKRQR 191

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             LQ  GDG T+++IA  +GL+  T+  +L  A   L      QA+ KA
Sbjct: 192 EVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLAVETTAQAVLKA 240


>gi|206580792|ref|YP_002239858.1| monoamine regulon transcriptional regulator [Klebsiella pneumoniae
           342]
 gi|206569850|gb|ACI11626.1| monoamine regulon transcriptional regulator [Klebsiella pneumoniae
           342]
          Length = 227

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 12/220 (5%)

Query: 10  KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           K+S    +  R L  I   I   +   Y +N+ L     +     LHN   ++       
Sbjct: 6   KASRNDAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPESYILHNIPDNTHQQYLE- 59

Query: 69  IETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                D  L  HF+     +   +     + + +                    +R    
Sbjct: 60  NFQPLDPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERR 116

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               +      +  ++E    A      V     +  ++       LT +E   + +  +
Sbjct: 117 IIAGISLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEDDDLPAILTAKEREIVGMVRE 175

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G +++ IA +L +S+ TV  +L +   K + VNR + +++
Sbjct: 176 GASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215


>gi|21224963|ref|NP_630742.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3334798|emb|CAA19946.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 222

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                V     E     +      LT RE   L+L   G ++ EIA  L +S HTV  ++
Sbjct: 133 LVADIVRRRREEAAADVTPQRLEVLTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHV 192

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL   +R+QA+  A   G +
Sbjct: 193 SNVLGKLGLRDRVQAVICAYETGLV 217


>gi|88859041|ref|ZP_01133682.1| putative regulator in two-component regulatory system; LuxR family
           protein [Pseudoalteromonas tunicata D2]
 gi|88819267|gb|EAR29081.1| putative regulator in two-component regulatory system; LuxR family
           protein [Pseudoalteromonas tunicata D2]
          Length = 217

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             ++   +LT ++   L    +G  +++IA +L +S  TV A++ +   KL   NR QA+
Sbjct: 143 GIATQIASLTPQQYKVLSYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQAV 202

Query: 226 AKAIRFGY 233
             A +   
Sbjct: 203 LIASKLQL 210


>gi|222149995|ref|YP_002550952.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736977|gb|ACM37940.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 248

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LT 175
           +    +G  +   V+   +  +++ + + +        +     L   RS  A     LT
Sbjct: 134 SVMFNVGRTRLALVMLLPDGFVISPDRLRDVGLLAAYCV----SLSTGRSQKADRDFELT 189

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ERE  CL    +G TS+EIA  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 190 ERELECLFWIAEGKTSDEIATILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 248


>gi|107101190|ref|ZP_01365108.1| hypothetical protein PaerPA_01002222 [Pseudomonas aeruginosa PACS2]
          Length = 856

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K + +    LTERE   + LA  G ++EEI ++L L++ TV  +L +   KL   NR 
Sbjct: 785 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 844

Query: 223 QAIAKAIRFGYI 234
           QAI +A     +
Sbjct: 845 QAIRRARELSLL 856


>gi|15596956|ref|NP_250450.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116049709|ref|YP_791486.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|9947737|gb|AAG05148.1|AE004601_13 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584930|gb|ABJ10945.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 901

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K + +    LTERE   + LA  G ++EEI ++L L++ TV  +L +   KL   NR 
Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889

Query: 223 QAIAKAIRFGYI 234
           QAI +A     +
Sbjct: 890 QAIRRARELSLL 901


>gi|269139570|ref|YP_003296271.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202]
 gi|267985231|gb|ACY85060.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202]
 gi|304559458|gb|ADM42122.1| Transcriptional regulator CsgD [Edwardsiella tarda FL6-60]
          Length = 210

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 4/146 (2%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT---SEFLMLAN 143
           II+ ++  +            +    +    I   V        +       + F    +
Sbjct: 59  IIFDAMLLDGDPAQRSSWLEAIFNQRVGRRIILINVNTHDEGLAWHQHGNIIAAFPAKTH 118

Query: 144 EVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +  +        V     E  +         LT RE   L+    G ++ +I+  L +S 
Sbjct: 119 QQALIRRLRTLLVAAQEDEPGEAIPVPRLTRLTLRELEVLKAMQQGASNLDISRILYISE 178

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228
           +TV  ++ +   K+   NRIQA+  A
Sbjct: 179 NTVRTHIYNIFKKIAVKNRIQAVKWA 204


>gi|302561047|ref|ZP_07313389.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302478665|gb|EFL41758.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 227

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              R+    +LT RE   L     G++++EIAE+L +S  TV  ++  A  KL A +R Q
Sbjct: 152 DPARAERLDSLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQ 211

Query: 224 AIAKAIRFGYI 234
            +  A   G +
Sbjct: 212 LVVTAYESGLV 222


>gi|239942450|ref|ZP_04694387.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988915|ref|ZP_04709579.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445905|ref|ZP_06585295.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348852|gb|EFE75756.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 221

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 4/135 (2%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +         +            V               L +
Sbjct: 84  FDLDEYAYDGLRAGASGFLVKDALPEELLAGIRAVAAGDAVVAPTLTRRLLDAYVHHLPV 143

Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                + +      LTERE   L + G G+++ EIA +L L+  TV  ++     K  A 
Sbjct: 144 VPGARATSDPRITALTEREREILTVIGQGWSNTEIAARLHLAESTVKTHVTRILAKTGAR 203

Query: 220 NRIQAIAKAIRFGYI 234
           +R+QA+  A     +
Sbjct: 204 DRVQAVILAYDTRLV 218


>gi|291303089|ref|YP_003514367.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572309|gb|ADD45274.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L   G ++ E+A +L LS  TV  ++     KL   +R+QA+  A   G
Sbjct: 155 ALTPRELEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLQLRDRVQAVIVAYETG 214

Query: 233 YI 234
            +
Sbjct: 215 LV 216


>gi|256374666|ref|YP_003098326.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255918969|gb|ACU34480.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 209

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +  +       L+ RE   L+L G G ++ EI  +L +   TV  +L     KLD  +R
Sbjct: 135 SVAGRLVRRTPALSPREVEVLRLVGRGLSNAEIGRQLFIGEATVKTHLLRVFSKLDVSDR 194

Query: 222 IQAIAKAIRFGYI 234
             A+  A+R G +
Sbjct: 195 TAAVTTAMRLGLL 207


>gi|218892289|ref|YP_002441156.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218772515|emb|CAW28297.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 901

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K + +    LTERE   + LA  G ++EEI ++L L++ TV  +L +   KL   NR 
Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889

Query: 223 QAIAKAIRFGYI 234
           QAI +A     +
Sbjct: 890 QAIRRARELSLL 901


>gi|212695640|ref|ZP_03303768.1| hypothetical protein ANHYDRO_00157 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677313|gb|EEB36920.1| hypothetical protein ANHYDRO_00157 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 198

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+RE   L+    G + ++IA KL +S  T+  ++ +   KL A N ++A  KA+ 
Sbjct: 131 ADPLTKREIEVLEELIKGSSKKDIAAKLFISERTLYNHIANIYDKLRAKNIVEAYNKAME 190

Query: 231 FGYI 234
            GYI
Sbjct: 191 LGYI 194


>gi|295836117|ref|ZP_06823050.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197695212|gb|EDY42145.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 259

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L L   G ++ +IA  L +S  TV  ++ +   K    +R QA+  A 
Sbjct: 187 PPDGLTAREVEVLVLIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAY 246

Query: 230 RFGYI 234
             G +
Sbjct: 247 LHGMV 251


>gi|255526737|ref|ZP_05393639.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296187028|ref|ZP_06855428.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|255509572|gb|EET85910.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296048466|gb|EFG87900.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 213

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                 I   +            LT RE   L   G G ++++I++KL +S +TV  +  
Sbjct: 123 YFDSYFIDCMVRENSIEPEKIEQLTAREKEILCEIGKGMSNQQISKKLCISENTVKKHNN 182

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+  +R Q    A + G +
Sbjct: 183 HIFDKLNMKDRTQLALYANKCGML 206


>gi|206563380|ref|YP_002234143.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039420|emb|CAR55386.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 215

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 36/78 (46%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                  L K   +    LT RE   L+   +G ++  IA  LG++  TV  +LG+   K
Sbjct: 133 AQRMIGALRKPPRNPFAALTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSK 192

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L   +R QA+A A R G 
Sbjct: 193 LHLSDRTQAVALAWREGL 210


>gi|254234854|ref|ZP_04928177.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719]
 gi|126166785|gb|EAZ52296.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719]
          Length = 901

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K + +    LTERE   + LA  G ++EEI ++L L++ TV  +L +   KL   NR 
Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889

Query: 223 QAIAKAIRFGYI 234
           QAI +A     +
Sbjct: 890 QAIRRARELSLL 901


>gi|83858980|ref|ZP_00952501.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83852427|gb|EAP90280.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 200

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
              +E + +A     Q       EL +   SA   LT RE   L+L  +G +++EIA  L
Sbjct: 105 DAPSEELADAVRRVAQGQRAIASELAETAWSAPVVLTARERDILRLVEEGKSNKEIARLL 164

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  TV  YL  AT KL A NRI+A   A   G++
Sbjct: 165 NLSPGTVRNYLAEATQKLGAANRIEAFQIARENGWL 200


>gi|262204133|ref|YP_003275341.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087480|gb|ACY23448.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 216

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178
               GY++ +++   L   V   A G           V+ ++  + +        LTERE
Sbjct: 99  AGATGYLVKSAQRSELVAAVHATADGQAVFTPGLAGLVLGEYRRIARSPGPETPVLTERE 158

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           T  L+    G +S +IA +L +S  TV  ++G+   KL   NR++    AI  G 
Sbjct: 159 TQVLREVAKGLSSRQIANRLAISPRTVENHVGATLRKLQLANRVELTRYAIEHGL 213


>gi|77459645|ref|YP_349152.1| sensor protein [Pseudomonas fluorescens Pf0-1]
 gi|77383648|gb|ABA75161.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 496

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194
               EV+ +A      +I     + K  S    +     LT RE   L L  +G   +EI
Sbjct: 389 AAIEEVMKDASWFSRTLIEKLANVKKVNSPQLPSVSFTDLTARERDVLALICEGLADKEI 448

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L L+ +TV  ++ +   KLD  +R +AI  A   G 
Sbjct: 449 AARLKLAPNTVRNHVATVYSKLDVHSRSEAIVWARERGL 487


>gi|21224488|ref|NP_630267.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|4007711|emb|CAA22396.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 260

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTERE 178
              GYV+ +     L                GA   +I ++L  +     ++   LT RE
Sbjct: 143 GACGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRHGEETSDHILTPRE 202

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+L  +G++S+EIAE L +S+ TV  +  +   KL   +R++    AIR G I
Sbjct: 203 EEVLKLVAEGHSSKEIAEILFISIKTVQRHRANLLQKLGLRDRLELTRYAIRAGLI 258


>gi|229096445|ref|ZP_04227417.1| Two-component protein Kinase [Bacillus cereus Rock3-29]
 gi|228687007|gb|EEL40913.1| Two-component protein Kinase [Bacillus cereus Rock3-29]
          Length = 592

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEQFDEQNETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  SA  KL   N+ +A+ KA+  G I
Sbjct: 565 YASSAYTKLGVRNKEEAVQKALEIGII 591


>gi|226314788|ref|YP_002774684.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226097738|dbj|BAH46180.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 856

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L++  + S A   LTERE+  L L G+G ++ +IA+KL L++ TV  ++     KL   N
Sbjct: 782 LDIQIRVSPALEKLTERESEVLALIGEGLSNSDIADKLHLTLGTVKGHVHQIFSKLQVKN 841

Query: 221 RIQAIAKAIR 230
           R QAI +   
Sbjct: 842 RAQAIVRLRE 851


>gi|37521252|ref|NP_924629.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212248|dbj|BAC89624.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 210

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 51/156 (32%), Gaps = 11/156 (7%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----LMLAN 143
               +          +  V +         I              +              
Sbjct: 54  DVALMDLRMPAMDGVEAIVAIRSEFPDSRIIVLTTYDTDEDIYRGLRAGAMAFLLKEAPT 113

Query: 144 EVIIEAHGACYQVITD-----FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           E ++EA  A +            +L  + S+    LT RE   L L   G T++EIA  L
Sbjct: 114 EELVEAIRAVHAGHKRIPQQVAAKLANRLSNP--ELTARELEVLHLVVKGQTNKEIAASL 171

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +   TV A++ +   K+ A +R QA   AIR G +
Sbjct: 172 FIGEGTVRAHMNNILAKMGAHDRTQAATLAIRRGLV 207


>gi|21220978|ref|NP_626757.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|6752360|emb|CAB69738.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 227

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 154 YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            ++I  FL               L+ERE   L L   G  + EIAE LGLS  T   ++ 
Sbjct: 130 ARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVS 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+A +R Q +  A   G +
Sbjct: 190 RIMGKLEARDRAQLVIVAYESGLV 213


>gi|298249444|ref|ZP_06973248.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547448|gb|EFH81315.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 236

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L   G T+ E+AE+L +S  TV  +L +   +L   +R QA+      G
Sbjct: 175 RLTRREQEILRLVATGATNREVAERLVISEGTVKNHLANLFSRLGLRDRTQAVLYTREQG 234

Query: 233 YI 234
            +
Sbjct: 235 LL 236


>gi|226364986|ref|YP_002782769.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243476|dbj|BAH53824.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 223

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    L    +                    G++   S  
Sbjct: 63  DVALLDYRMPELDGSQVAAAVRRAELATRVLLLSAHDESAIVYHALQEGAAGFLPKESTR 122

Query: 139 LMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G         +    E+ ++   A   L+ RE   L L   G +   I
Sbjct: 123 AEIVKAVLDCAQGRDVLPASLAVGLAGEVRRRSEPAGPVLSGREKEVLALIARGQSIPTI 182

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L L+  TV  ++     KL   +R  A+A+A+R G +
Sbjct: 183 AGELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRGLL 222


>gi|222098824|ref|YP_002532882.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229142095|ref|ZP_04270620.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|221242883|gb|ACM15593.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228641384|gb|EEK97690.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 189

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|120406465|ref|YP_956294.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959283|gb|ABM16288.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 219

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA-RNLT 175
           L    +G+V+  S    L   V   A G          +V+  +    ++    A  +LT
Sbjct: 97  LRAGASGFVLKDSPAEELIRAVRAVARGDGFLDPSVTARVLDTYRTAAEEPVPEAVDDLT 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L+L   G ++ EIA++L +S  TV +++G   +KL   +R  AI  A + G +
Sbjct: 157 PRELDVLRLMAKGRSNSEIADELVISGVTVKSHIGRIFLKLRLRDRAAAIVYAYQKGIV 215


>gi|330504873|ref|YP_004381742.1| regulatory protein LuxR [Pseudomonas mendocina NK-01]
 gi|328919158|gb|AEB59989.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01]
          Length = 913

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
              + A     Q + +  E+  +       L+ RE + LQL   G +++EI+E+L +S+H
Sbjct: 824 REALLAQLPAQQHVDESSEIEHE--PLTEKLSGRELAVLQLIARGCSNQEISERLFISLH 881

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +      KL    R QA+A+A   G +
Sbjct: 882 TVKTHARHINSKLGVERRTQAVARAKGLGLL 912


>gi|300694462|ref|YP_003750435.1| nitrate/nitrite response regulator in two-component regulatory
           system with narx, regulates anaerobic respiration and
           fermentation (luxr/uhpa familiy) [Ralstonia solanacearum
           PSI07]
 gi|299076499|emb|CBJ35824.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           PSI07]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
           +        A E +I        V          +  +     LT RE   +Q    G +
Sbjct: 112 LVAGVRKAAAGEPVIAESMTAKLVAHFRAPERAAQPEAIPVERLTARERDIVQGLVRGDS 171

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++EIA  L ++  TV  ++ +   KL+  +R+Q    A+  G 
Sbjct: 172 NKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214


>gi|269956425|ref|YP_003326214.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305106|gb|ACZ30656.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 241

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             A   LT+RE    +    G ++ +IA +L LS  TV  Y+     KL   +R+Q    
Sbjct: 167 PPAIAALTDREREVARNVARGLSNAQIAARLFLSEATVKTYVSRLLTKLGLRDRVQIAVL 226

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 227 AYETGLV 233


>gi|290956290|ref|YP_003487472.1| respose regulatory protein [Streptomyces scabiei 87.22]
 gi|260645816|emb|CBG68907.1| putative respose regulatory protein [Streptomyces scabiei 87.22]
          Length = 238

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 38/109 (34%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           L  +  S    L+ERE   L   
Sbjct: 129 AGATGYLLKAERPEELFAAIRDAASGRTTLSAPVADRLMAQLRSPRPALSEREHEILGQL 188

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 189 ARGLGNREIARALFISEATVKTHLGRIYAKLGVETRAGAVAVAKERRLL 237


>gi|312112563|ref|YP_003990879.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217664|gb|ADP76268.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 185

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + S+    LT+ E   LQ   +  T+ EI+E L +S  TV  ++ S   KLD  +R+ 
Sbjct: 114 ADRLSNYHPPLTKVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVG 173

Query: 224 AIAKAIRFGYI 234
           A+ KA++ G +
Sbjct: 174 AVVKAMKLGIL 184


>gi|253688783|ref|YP_003017973.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755361|gb|ACT13437.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 210

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
              L    +    I   V         ++            A E +++A  +        
Sbjct: 71  LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDAIRSSDAFSDQV 130

Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            ++ + R       S    LTERE   LQ    G ++++IA  L +S  TV  ++ +   
Sbjct: 131 RDVLRHRIAIQETPSPFTVLTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLR 190

Query: 215 KLDAVNRIQAIAK 227
           KL+  +R+ A   
Sbjct: 191 KLNVRSRVAATVL 203


>gi|91776067|ref|YP_545823.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91710054|gb|ABE49982.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 213

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            +          ++    + +    L++RE         G T+ EIA+ L LS  TV  +
Sbjct: 126 MYLEANVAQQMAIQQISGQQNPVDVLSDREFEVFMALAKGKTTNEIADILSLSPRTVGTH 185

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +   KL+A N  +    A+R G I
Sbjct: 186 LYNIKQKLNASNSAEIALIAMRSGLI 211


>gi|299531936|ref|ZP_07045336.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298720111|gb|EFI61068.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 214

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 20/177 (11%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128
                   P+    +       S  +L  +L         +              L    
Sbjct: 37  ARARLAEHPVAMALVDLGLPDGSGIELISQLRAADPGMGILVISAWSTEDAILSALRAGA 96

Query: 129 NGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLEL----FKKRSSAARNLTER 177
           NGYV+   + L +   +                ++I +          K       L+ R
Sbjct: 97  NGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRIIAELQPSQPTEAHKEMPPEAILSAR 156

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  DG T+ EIAE L LS +TV  ++ +   KL   +R +A+++A   G +
Sbjct: 157 EIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 213


>gi|253686983|ref|YP_003016173.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753561|gb|ACT11637.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 204

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L+ER+   LQL   G ++++I+  L +S  TV ++L S   +L+  NR QA  
Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|27362891|gb|AAN86997.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum]
          Length = 204

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L+ER+   LQL   G ++++I+  L +S  TV ++L S   +L+  NR QA  
Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|94969929|ref|YP_591977.1| LuxR family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551979|gb|ABF41903.1| transcriptional regulator, LuxR family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 153

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   G ++ EIA +L +S +TV  +   A  KL A  R QA+ +    G +
Sbjct: 93  TAREMEILTLVAHGLSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAVQRGKELGLL 152


>gi|92116611|ref|YP_576340.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799505|gb|ABE61880.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 201

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  +S   +L+ RE   L L  +G  ++ IA +LG+SVHTV  ++ +  VKL A NR  
Sbjct: 129 EETAASLPIHLSPREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAANRTD 188

Query: 224 AIAKAIRFGYI 234
           AIA A+R G +
Sbjct: 189 AIATAMRQGLV 199


>gi|84501129|ref|ZP_00999364.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Oceanicola batsensis HTCC2597]
 gi|84391196|gb|EAQ03614.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Oceanicola batsensis HTCC2597]
          Length = 269

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 71/248 (28%), Gaps = 23/248 (9%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNR-------------IKARNFALYTINSALDFPRRQQ- 49
           +    ++ +S ++   RL   Q                                      
Sbjct: 11  DLSEPERLASRRDYLERLTNAQTIEELWRLHCDKMAGYGFDRLIYGFTRYRTATSLGDPE 70

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSV 106
               L N+     +        +    +           W  +++      +  S +  +
Sbjct: 71  DFVILTNHTEAYTEGFLGKGLYFHAPMVRWALEHEGACSWGILEDMIASGTLTGSERKVI 130

Query: 107 RLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
                     G +     +         +   S       + + + HG    V+ +   L
Sbjct: 131 EFNRQHDVLTGYSISFKSISPRTKGAIALTARSGLSQAEVDGVWQQHGRDIVVMNNVAHL 190

Query: 164 FKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                     AR LT+R+   LQ  GDG T+ +IA  +GL+  TV  +L  A   L+   
Sbjct: 191 KILTLPYAGPARGLTKRQREALQWVGDGKTTADIALLMGLTSATVEKHLRLAREALNVET 250

Query: 221 RIQAIAKA 228
             QA+ KA
Sbjct: 251 TAQAVLKA 258


>gi|332666745|ref|YP_004449533.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335559|gb|AEE52660.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             C +VI   LE       + + A   L+ RE   +QL+  G  ++EIA+ L LS HTV 
Sbjct: 126 FFCTRVIDCLLEKSFSKDTQVNCAPTPLSSREIEIVQLSARGLIAKEIADTLNLSTHTVY 185

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  +   KL   +  + +  A+  G +
Sbjct: 186 THRKNIMKKLQINSSSELVLYAVSKGLV 213


>gi|258624788|ref|ZP_05719719.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603]
 gi|258582950|gb|EEW07768.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603]
          Length = 207

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L    +
Sbjct: 80  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 139

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 140 ESNPFETLTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199

Query: 227 KAIRF 231
             +  
Sbjct: 200 LYLER 204


>gi|116696270|ref|YP_841846.1| response regulator [Ralstonia eutropha H16]
 gi|113530769|emb|CAJ97116.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 218

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   +Q    G +++EIA  LG++  TV  ++ +   KL+  +R+Q    A+ 
Sbjct: 152 APRLTAREREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVE 211

Query: 231 FGY 233
            G 
Sbjct: 212 HGL 214


>gi|304385722|ref|ZP_07368066.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328226|gb|EFL95448.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284]
          Length = 201

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RET  L++A  G  ++EIA++L LS  T+  YL +   KL   NR++A+  A    
Sbjct: 140 PLTKRETEVLKVAASGMPTKEIAQQLFLSEGTIRNYLSAIFSKLGVRNRLEAVELAQNNR 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|262164491|ref|ZP_06032229.1| transcriptional regulator VpsT [Vibrio mimicus VM223]
 gi|262026871|gb|EEY45538.1| transcriptional regulator VpsT [Vibrio mimicus VM223]
          Length = 224

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           + +        + I  +       +S     LT+RE   ++L G G ++ EIA+KL +S 
Sbjct: 128 DEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVSE 187

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228
           +TV  +L +   K++A NR+QA+  A
Sbjct: 188 NTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|258625244|ref|ZP_05720156.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|262173344|ref|ZP_06041021.1| transcriptional regulator VpsT [Vibrio mimicus MB-451]
 gi|258582491|gb|EEW07328.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|261890702|gb|EEY36689.1| transcriptional regulator VpsT [Vibrio mimicus MB-451]
          Length = 224

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           + +        + I  +       +S     LT+RE   ++L G G ++ EIA+KL +S 
Sbjct: 128 DEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVSE 187

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228
           +TV  +L +   K++A NR+QA+  A
Sbjct: 188 NTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|262203353|ref|YP_003274561.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262086700|gb|ACY22668.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 39/80 (48%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+T +        +    LTERET  L+L   G T+ EIA  LG+S  TV +++     
Sbjct: 144 RVLTGYRRSTTGDIATPDELTERETDVLRLVARGRTNAEIAAGLGISEVTVKSHINHIFT 203

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KLD  +R  AI  A     +
Sbjct: 204 KLDLRDRAAAIVYAFDHSLV 223


>gi|239918654|ref|YP_002958212.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839861|gb|ACS31658.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 230

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYT 190
           +   + ++  +           ++ +D +   +  ++ +A  +LT RE   L L   G  
Sbjct: 125 VHRGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVLMAQGAA 184

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA +L LS  TV  ++G    KL A +R+QA+  A R G +
Sbjct: 185 NLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228


>gi|116330476|ref|YP_800194.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124165|gb|ABJ75436.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 233

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               ++I +F +  + ++   +N   LT+R+   L     G T  +IA++L +S HTV+ 
Sbjct: 140 RIADKIIREFTKKEENQNPPIQNTLGLTKRQLQILNFVALGMTVADIADELDISSHTVSR 199

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++     K++  ++ +AI +  R G I
Sbjct: 200 HIEKIYKKMEVHSKSEAIIRGRRMGII 226


>gi|116328918|ref|YP_798638.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116121662|gb|ABJ79705.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 233

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               ++I +F +  + ++   +N   LT+R+   L     G T  +IA++L +S HTV+ 
Sbjct: 140 RIADKIIREFTKKEENQNPPIQNTLGLTKRQLQILNFVALGMTVADIADELDISSHTVSR 199

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++     K++  ++ +AI +  R G I
Sbjct: 200 HIEKIYKKMEVHSKSEAIIRGRRMGII 226


>gi|21218963|ref|NP_624742.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|6138889|emb|CAB59718.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 219

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGD 187
            +      + A + ++ A      +         + S         LT RE     L  D
Sbjct: 109 ELLDGIRTVAAGDALLSAAATRSLITRFLDSPDPRASPVPPEDLAALTAREREVTALVAD 168

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G + +EIA +L LS  TV  ++  A  KL A +R Q +A A R G 
Sbjct: 169 GKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 214


>gi|323357435|ref|YP_004223831.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273806|dbj|BAJ73951.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 216

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 2/128 (1%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
                 +      F ++    +  +++     +   + VI                  + 
Sbjct: 91  EAAARAIQRGASGFLLKDSEPE--FLLSAIRTVHAGSAVIAAEATRELFAHIAENGSAEP 148

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             ++   LTERE     LA  G ++ EIA +  LS  TV  ++     KL   +R+Q + 
Sbjct: 149 VPASFGELTEREREIFLLAAAGLSNSEIAAREFLSEATVKTHISRILAKLSLRDRVQLVV 208

Query: 227 KAIRFGYI 234
            A R G +
Sbjct: 209 FAYRHGLV 216


>gi|297538769|ref|YP_003674538.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297258116|gb|ADI29961.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 281

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAARN--------LTE 176
            +   YV F+++      + ++         V+     +    +S A +        L+ 
Sbjct: 167 NNDCLYVFFSTDSTFNVQDSLMGLLMPHIDNVLRKIQHIEPVDASEAESVSVIKSYNLSV 226

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           RE   +     G T  EIA  L +S +TV ++L     KL+   R QA+AK
Sbjct: 227 RELEIIDWVKQGKTDSEIAMILFISQNTVKSHLKHVFEKLNVSRRAQAVAK 277


>gi|256790030|ref|ZP_05528461.1| two-component response regulator [Streptomyces lividans TK24]
 gi|289773911|ref|ZP_06533289.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289704110|gb|EFD71539.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 223

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGD 187
            +      + A + ++ A      +         + S         LT RE     L  D
Sbjct: 113 ELLDGIRTVAAGDALLSAAATRSLITRFLDSPDPRASPVPPEDLAALTAREREVTALVAD 172

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G + +EIA +L LS  TV  ++  A  KL A +R Q +A A R G 
Sbjct: 173 GKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 218


>gi|238061615|ref|ZP_04606324.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237883426|gb|EEP72254.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 233

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 42/121 (34%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG++  +         +            +            T      +   S    
Sbjct: 108 LQAGVSGFLLKDAGPAELLHAIRVVAAGDALLAPRITRRLIGQFTAQRTATQAAESRLAV 167

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L L G G ++ EI  +L LS  T   ++  A  KL A +R Q +  A + G 
Sbjct: 168 LTQREREVLTLVGRGLSNNEIGAELFLSPATARTHVSHAMAKLGARDRAQLVVIAYQTGL 227

Query: 234 I 234
           +
Sbjct: 228 V 228


>gi|197121316|ref|YP_002133267.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171165|gb|ACG72138.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
          Length = 208

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L  +G  ++ IA +LG+S HT   ++ +   KL A +R +AI +A R G
Sbjct: 145 PLTPREREVLALVAEGLGNKAIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 204

Query: 233 YI 234
            +
Sbjct: 205 LV 206


>gi|189461728|ref|ZP_03010513.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136]
 gi|189431488|gb|EDV00473.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136]
          Length = 215

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              C +  +   E  +   S    LT  E   L+    G T++EIA +  LSV+TV  + 
Sbjct: 124 QYICMKAKSWLYEKERDAVSDMPQLTMTEKEVLRSLTLGKTTKEIAAERFLSVYTVMTHR 183

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+  N  +AI  A+R G +
Sbjct: 184 KNIFRKLNVNNAQEAIRYALRAGIV 208


>gi|332530117|ref|ZP_08406067.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332040590|gb|EGI76966.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 211

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L          L++RE    +L   G    EIAE+L +S  TV+ +      KL+  + 
Sbjct: 138 SLGSGDRLPHETLSDREMEVFRLLLAGQGVNEIAEQLCISNKTVSTHKTRLMEKLNLGST 197

Query: 222 IQAIAKAIRFGYI 234
            + +  A++ G +
Sbjct: 198 AELVRYAMQHGLL 210


>gi|326330564|ref|ZP_08196871.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951639|gb|EGD43672.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 205

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 45/109 (41%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++   +  ++   +   A G           + K   S    LT+RE   L+  
Sbjct: 97  AGAAGYLLKDVDPEVIVEGIRRAAAGDVVLAPDLAARVLKGMRSPLPRLTDREIEVLRHL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T+ EIA  L ++  TV ++L     KLD  +R +AI  A   G I
Sbjct: 157 ARGATNREIARTLFVTEATVKSHLAHIFTKLDVDSRSRAIHVAQETGLI 205


>gi|256787861|ref|ZP_05526292.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289771746|ref|ZP_06531124.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289701945|gb|EFD69374.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 231

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 154 YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            ++I  FL               L+ERE   L L   G  + EIAE LGLS  T   ++ 
Sbjct: 134 ARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVS 193

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+A +R Q +  A   G +
Sbjct: 194 RIMGKLEARDRAQLVIVAYESGLV 217


>gi|227327824|ref|ZP_03831848.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
 gi|290454909|emb|CBJ57167.1| homologue of Erwinia virulence regulator [Pectobacterium
           carotovorum]
          Length = 204

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L+ER+   LQL   G ++++I+  L +S  TV ++L S   +L+  NR QA  
Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|146280183|ref|YP_001170340.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558424|gb|ABP73035.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 207

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L     GYV  +     L N +     G  Y  ++  L   +   +  + L+ +E   L+
Sbjct: 97  LHRGAAGYVEKSQSARSLVNAINFVLAGEIYVPMSLRLNSVRPSITDEKGLSPKELEVLR 156

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              +G  ++EIA+ LG+S  TV  ++ S   K++  NR QA   
Sbjct: 157 CLTNGLMNKEIAQTLGISEVTVKMHVRSICAKMNVKNRTQAAMI 200


>gi|73748274|ref|YP_307513.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669054|ref|YP_001213872.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|289432323|ref|YP_003462196.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659990|emb|CAI82597.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270002|gb|ABQ16994.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
 gi|288946043|gb|ADC73740.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 232

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   LQLA  G ++ EIA+KL LS+ TV A+L +   K+    R +AI K  R G
Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213

Query: 233 YI 234
           Y+
Sbjct: 214 YV 215


>gi|292491638|ref|YP_003527077.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291580233|gb|ADE14690.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 206

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT--- 175
             P+ +   K G + F ++   L  + +++A     ++    ++   K +   + LT   
Sbjct: 86  TIPLSVRAMKGGAIEFLTK--PLDEQYLLDAIHKAVELNRQAMQEQVKITEVQQRLTSLT 143

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE+   +L   G  +++IA KLG S  T+  +      K+ A +  Q +  A + G 
Sbjct: 144 PRESEVFKLVITGLLNKQIAFKLGRSEKTIKVHRARVMEKMQAKSLAQLVRLAEKMGI 201


>gi|315499018|ref|YP_004087822.1| transcriptional regulator, luxr family [Asticcacaulis excentricus
           CB 48]
 gi|315417030|gb|ADU13671.1| transcriptional regulator, LuxR family [Asticcacaulis excentricus
           CB 48]
          Length = 132

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKL 198
           A   +        ++           +  A+    ++ RE + L     G +++EIA KL
Sbjct: 36  AAGFLALGVFVGNRLFRALPTQPFNGNPQAQTALGISARELTVLHELAAGQSNKEIARKL 95

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S HTV  ++     KL A  R  A+ KA   G I
Sbjct: 96  SVSPHTVKTHVARLYDKLQATRRTDAVRKARELGLI 131


>gi|226364089|ref|YP_002781871.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242578|dbj|BAH52926.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 394

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+     LT RE    QL   G ++ EIA++L +SV TV +++     KL A+NR +AI 
Sbjct: 319 RAPGLEELTMREREVFQLLAAGKSNTEIADELVISVFTVKSHVKKILRKLGAMNRSEAIY 378

Query: 227 KAIRF 231
           + +  
Sbjct: 379 RYLEM 383


>gi|86360200|ref|YP_472089.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86284302|gb|ABC93362.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 223

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166
           +         I+  V  G         ++E ++ A E + +        V    +   ++
Sbjct: 85  MLSMHDSREYISSSVMRGAAGYVLKDVSTEEIVAAIETVADGGTYFSSGVFDALMR--ER 142

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               +  LT RE   L L   G ++ EIAE LG+S  T   +  +   KL        I 
Sbjct: 143 AEQGSDPLTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIR 202

Query: 227 KAIRFGY 233
            A+  G 
Sbjct: 203 YALDHGI 209


>gi|89092629|ref|ZP_01165582.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
 gi|89083141|gb|EAR62360.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LT RE   L+L  +G +++EIA  L +SV TV  +  +   KLD          A
Sbjct: 151 AEQEALTGREKDVLKLVAEGNSNKEIARTLDISVRTVETHRQNIKNKLDIHTAAGLTRYA 210

Query: 229 IRFGYI 234
           I    +
Sbjct: 211 IDNNLV 216


>gi|310644124|ref|YP_003948882.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309249074|gb|ADO58641.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 216

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT++E   L+    G+ S+EIA  +G+S  TV A+L +   KL   +R +A+A ++  G 
Sbjct: 154 LTDKERHILKSVAHGFKSKEIAFDMGISERTVKAHLTNIYNKLGVDSRSEAVAVSLERGI 213

Query: 234 I 234
           +
Sbjct: 214 L 214


>gi|271967487|ref|YP_003341683.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510662|gb|ACZ88940.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 239

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANE-------VIIEAHGACYQVITDFLELFKKRSSAAR---N 173
           L     G++   S    L+             A     ++I+ ++               
Sbjct: 103 LRAGAYGFLPKDSSPEDLSAAIRTVHAGEAAVAPRLLTRLISTYVRAPHGTRPTPTGLGE 162

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE    +L   G  +  I+  L +S+ TV  Y+ S   KL   +R QA+  A   G 
Sbjct: 163 LTPREVEVWRLMATGLDNTGISRTLDISLSTVKNYITSIFDKLAVRDRAQAVIVAYESGL 222

Query: 234 I 234
           +
Sbjct: 223 V 223


>gi|261212434|ref|ZP_05926719.1| nitrate/nitrite response regulator protein [Vibrio sp. RC341]
 gi|260838365|gb|EEX65021.1| nitrate/nitrite response regulator protein [Vibrio sp. RC341]
          Length = 200

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L    +
Sbjct: 73  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 132

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KL+  +R  A  
Sbjct: 133 ASNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLNVPSRTAATI 192

Query: 227 KAIRF 231
             +  
Sbjct: 193 LYLER 197


>gi|271970494|ref|YP_003344690.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513669|gb|ACZ91947.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L G G ++ EIA  + +S HTV  ++ +   KL   +R+QA+  A   
Sbjct: 152 DMLTARERETLELLGRGLSNAEIAATMVVSEHTVKTHVSNVLTKLGLRDRVQAVITAYET 211

Query: 232 GYI 234
           G I
Sbjct: 212 GLI 214


>gi|227112572|ref|ZP_03826228.1| virulence regulator [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 204

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L+ER+   LQL   G ++++I+  L +S  TV ++L S   +L+  NR QA  
Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|254475262|ref|ZP_05088648.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
 gi|214029505|gb|EEB70340.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
          Length = 240

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            L+ RE S  +L   G T++ IA +LGLS  TV  ++ S   KL A NR Q +A A +
Sbjct: 150 GLSPREQSIGELLALGLTNKVIAFELGLSEPTVKMHIRSIFRKLGAANRTQ-VAAAFQ 206


>gi|152965963|ref|YP_001361747.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360480|gb|ABS03483.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
               +LT RE   L+      ++ EIA  L LS  TV  ++     KL   +R+ A+  A
Sbjct: 155 PRLADLTPRELEVLRHIAGARSNAEIAAHLFLSEATVKTHVARVLAKLGVRDRVHAVVLA 214

Query: 229 IRFGYIC 235
              G  C
Sbjct: 215 YETGLAC 221


>gi|302867410|ref|YP_003836047.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506180|ref|YP_004085067.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570269|gb|ADL46471.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412799|gb|ADU10916.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 227

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 35/86 (40%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 +      +     + A   LT+RE   L     G ++ EIA  L +S  TV  +
Sbjct: 138 LRRLLDRFAQVLPDPAAAPARALEPLTDREREVLTHMARGLSNAEIARLLSVSETTVKTH 197

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G    KL   +R+QA+  A   G +
Sbjct: 198 VGHVLTKLRLRDRVQAVVLAYETGLV 223


>gi|255019078|ref|ZP_05291204.1| two-component response regulator [Listeria monocytogenes FSL
           F2-515]
          Length = 64

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L  +G +++EIA++L +++ TV  ++ +   KLD  +R QA   A +   +
Sbjct: 1   ILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 54


>gi|87199644|ref|YP_496901.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135325|gb|ABD26067.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 244

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                  + +       +     A  L+ERE    +    G  ++ IA+ LG++  TV  
Sbjct: 135 ALAQFLPETMERRTRPARPGPDLAGTLSEREIETFRRMCRGEPNKVIAQNLGITEATVKV 194

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ +   KL   NR QA+A A+  G
Sbjct: 195 HVKAILRKLHLKNRTQAVAWALGEG 219


>gi|260904804|ref|ZP_05913126.1| response regulatory protein [Brevibacterium linens BL2]
          Length = 206

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   ++L   G ++ +IA++L ++  TV ++L +   KL   +R +AI  A 
Sbjct: 142 PGPKLTRRERDVVKLLATGASNAQIAQELFVTEATVKSHLVNVFTKLGVESRSRAIRVAE 201

Query: 230 RFGYI 234
             G +
Sbjct: 202 DQGLV 206


>gi|55821328|ref|YP_139770.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55823240|ref|YP_141681.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55737313|gb|AAV60955.1| response regulator (homolog to RR11 Spn) [Streptococcus
           thermophilus LMG 18311]
 gi|55739225|gb|AAV62866.1| response regulator (homolog to RR11 Spn) [Streptococcus
           thermophilus CNRZ1066]
          Length = 200

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +  +     L++RE   L +   G T++EIAE L LS  TV  Y+ +   KLDA NR
Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNR 186

Query: 222 IQAIAKAIRFGYI 234
             A+  A    ++
Sbjct: 187 TDAVRIAKEKDWL 199


>gi|307946119|ref|ZP_07661454.1| transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307769783|gb|EFO29009.1| transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 233

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 13/229 (5%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPN 66
             ++++   +   L     R+ A     + + + L  P R          +     D   
Sbjct: 14  VSEANAAHHVLDILESNLRRMGA----THVLITGLPMPNRPIDSLVHRFRWPDQRNDGIE 69

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLG 125
               +  D  L    +    ++W        I +       L          +  PV   
Sbjct: 70  STSLSANDSALMLGLASNRAMVWT-------ISAGDMEHSDLLAAAGEGNQVVIVPVTEL 122

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                +V  +   L      +               +L          L+ RE   L+L 
Sbjct: 123 HPFQAFVYASGPSLQANKWELAGLEVLSNAAFARLRDLGVVSGQRPGALSTRERKVLELT 182

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T+ EIA+ L +S  TV+A+L +A+VKL+A N+   + +A+R+G I
Sbjct: 183 AYGKTAGEIADLLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231


>gi|283784182|ref|YP_003364047.1| two-component system response regulator protein [Citrobacter
           rodentium ICC168]
 gi|282947636|emb|CBG87191.1| two-component system response regulator protein [Citrobacter
           rodentium ICC168]
          Length = 209

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 13/160 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---- 142
           +    +      E+   L  RL      F  I   +          +       L     
Sbjct: 48  VSVAVMDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDSPTFVQSALTAGASGYLTKRCG 107

Query: 143 NEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            E +++A        H  C   +   L   ++       LT RE     L   G + +EI
Sbjct: 108 PEELVQAVRSVGLGGHYLCADAL-RALRGGEQLPPELEALTPREREVFNLLVKGDSVKEI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A KL LS  TV+ Y  +   KL+  + I+ +  A+    +
Sbjct: 167 AFKLDLSHKTVHVYRANVLGKLNCHSTIELVHFALDHKLL 206


>gi|302876066|ref|YP_003844699.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
 gi|307686787|ref|ZP_07629233.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Clostridium cellulovorans 743B]
 gi|302578923|gb|ADL52935.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
          Length = 805

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+++E   ++L  +G T+ EIA +L +S  TV  ++ +   KL+A NRI A+  A   
Sbjct: 743 EELSKKELEVIRLIAEGCTNGEIAARLDISTATVKFHIANLLKKLNAENRIMAVKIASEN 802

Query: 232 GY 233
             
Sbjct: 803 DL 804


>gi|239933765|ref|ZP_04690718.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 212

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              +  +  ++ + + ++                  +  K +   + LTERET  L L  
Sbjct: 101 PADLIAAVRVVASGDALLAPSVTRRLIADFAKQRPAVRGKPALRLKGLTERETEVLTLVA 160

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EIA+ L L+  TV  ++     KLD  +R QA+  A   G +
Sbjct: 161 RGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 208


>gi|223934493|ref|ZP_03626414.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896956|gb|EEF63396.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 212

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 153 CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                       +  S       LT+RE   L L   G+ ++EIA+K+ +SV TV  +L 
Sbjct: 133 SQVAHRVVHSFHEPASPTVDTAALTDREKEILDLLTQGFANKEIADKMQISVTTVRTHLR 192

Query: 211 SATVKLDAVNRIQAIAK 227
               KL   +R +AI K
Sbjct: 193 HIYEKLHIRSRSEAIVK 209


>gi|294102849|ref|YP_003554707.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617829|gb|ADE57983.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 223

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 160 FLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           FL   +K  + + + L+ RE   LQL  +G  + +IA+ L +SV TV  +  +   K++ 
Sbjct: 145 FLSGDEKEHTDSESALSHREKEVLQLIAEGKANRDIAKTLHISVKTVETHKYNIMRKINL 204

Query: 219 VNRIQAIAKAIRFGY 233
            +  +    AI+ G 
Sbjct: 205 HSVAELTKYAIKSGL 219


>gi|172063774|ref|YP_001811425.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996291|gb|ACB67209.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  + +      L                
Sbjct: 60  TLANAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PNTYRGDYV 117

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116
                  D          +PI+W           ++     +   L   ++        +
Sbjct: 118 RHNHHDIDPRTLDARVCNMPIVWDLQQLRREHRERDSGPCVTPAALDGFLQTMQDDGMCS 177

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 236

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296

Query: 230 RFGYI 234
           +   I
Sbjct: 297 KLELI 301


>gi|77165178|ref|YP_343703.1| two component LuxR family transcriptional regulator [Nitrosococcus
           oceani ATCC 19707]
 gi|254433476|ref|ZP_05046984.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|76883492|gb|ABA58173.1| two component transcriptional regulator, LuxR family [Nitrosococcus
           oceani ATCC 19707]
 gi|207089809|gb|EDZ67080.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 201

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 4/129 (3%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---- 160
            ++L G  L    I     +        +   +F+                +  +     
Sbjct: 69  ILQLRGIHLSIIMITGHADVPMAVRAMKLGAKDFIEKPFRAQTLLDRLHKILSEETPKKQ 128

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                ++ +   +LT RE    +L   G  ++ IA +L +S+ TV  +  +   KL   +
Sbjct: 129 FHSQPEKLAQLESLTRRERQVFKLLAQGKMNKHIAAELCISIRTVETHRANIMEKLKVRS 188

Query: 221 RIQAIAKAI 229
               +  AI
Sbjct: 189 LADIVRLAI 197


>gi|238799349|ref|ZP_04642788.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
 gi|238716799|gb|EEQ08676.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
          Length = 209

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 11/131 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITD- 159
           L    +    I   V    +    +I              E+++E         +V +D 
Sbjct: 72  LRNEGIDARIIILTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRQAALGEKVFSDE 131

Query: 160 ---FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
              +L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 132 VALYLSSRHEQVNPFGELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAK 227
           +  +R+ A   
Sbjct: 192 NVRSRVAATIM 202


>gi|320106073|ref|YP_004181663.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924594|gb|ADV81669.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 239

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           E ++    A + ++       ++++     LT RE   +    +G +++++A +  +S  
Sbjct: 149 ERVVNLVMALHGLMQKAAAQPERKTF---GLTPRELEVVGCIVEGCSNKDVARQFNISEE 205

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +L +   K     R++    AI    +
Sbjct: 206 TVKRHLSNIFDKTGVSTRLELALFAISHKLV 236


>gi|320009389|gb|ADW04239.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 210

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 38/109 (34%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +  +  S    LTERE   L   
Sbjct: 101 AGATGYLLKAERPEELFAAIRAAAQGRTTLSPPVASRVMARMRSPRPTLTERELDILGQL 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + +IA  L +S  TV  +LG    KL    R  A++ A     +
Sbjct: 161 SQGLGNRDIARALFISEATVKTHLGRIYEKLGVDTRAGAVSVAKEQRLL 209


>gi|258652817|ref|YP_003201973.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556042|gb|ACV78984.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTE 176
                GYV+       +                 A   ++  +L  L +        LT 
Sbjct: 98  SAGAAGYVLKRQADQDIVEACRAALRGESFIYPAALTSLMRTYLDRLARGERPGRGPLTP 157

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   ++L  +G++++EIA+ L +S  TV+ +  +   KLD  +R+     AIR G I
Sbjct: 158 READVVKLIAEGHSAQEIADCLSISPRTVDRHRANILEKLDLRDRVDLTRYAIRAGLI 215


>gi|254385617|ref|ZP_05000941.1| response regulator [Streptomyces sp. Mg1]
 gi|194344486|gb|EDX25452.1| response regulator [Streptomyces sp. Mg1]
          Length = 210

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 49/109 (44%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    L N V   A G      +   +LF+ R   A  L+ERE   LQL 
Sbjct: 101 AGAAGYLLKGSSREELVNAVKAAARGETVLTPSLAPKLFRARVVEAPVLSERECEVLQLV 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T+ +I  +L +S  TV  +L  +  KL   +R  A+  A+  G +
Sbjct: 161 RQGLTNADIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVITALERGLL 209


>gi|224477373|ref|YP_002634979.1| response regulator of the two-component regulatory [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|81321267|sp|Q7WZY4|NREC_STACT RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|32330234|gb|AAP79640.1| NreC [Staphylococcus carnosus]
 gi|222421980|emb|CAL28794.1| response regulator of the two-component regulatory [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R L++RE   L L   GY ++EIAEKL +SV TV A+      KL+  ++ + +  A+
Sbjct: 151 PFRILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYAL 210

Query: 230 RFGYI 234
           +   +
Sbjct: 211 KKKLL 215


>gi|4096799|gb|AAD10462.1| orfx; function unknown; similar to response regulators of
           two-component regulatory systems; Method: conceptual
           translation supplied by author [Staphylococcus carnosus]
          Length = 185

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R L++RE   L L   GY ++EIAEKL +SV TV A+      KL+  ++ + +  A+
Sbjct: 119 PFRILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYAL 178

Query: 230 RFGYI 234
           +   +
Sbjct: 179 KKKLL 183


>gi|331696674|ref|YP_004332913.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951363|gb|AEA25060.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS------AARNLTER 177
           L     G+++  +    + + V   A G          EL            A R LT+R
Sbjct: 101 LRAGATGFLLKRARPADIVSAVRTVASGESLLFPAAVRELVAAVGPDTGDRLAGRGLTDR 160

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+  L+    G ++ EIA +L L V TV  ++G+   KL   +R QA+  A   G++
Sbjct: 161 ESEVLRGMARGLSNAEIAAELVLGVETVKTHVGNVLAKLGVRDRTQAVVAAFESGFV 217


>gi|295695702|ref|YP_003588940.1| GAF modulated transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295411304|gb|ADG05796.1| GAF modulated transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 511

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 81/239 (33%), Gaps = 33/239 (13%)

Query: 10  KSSSLQELS-PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +S +L+E+    +         R  AL+                    Y + + +IP   
Sbjct: 291 QSKNLEEIITSTVEKTCRIGGFRRSALFWYTPLTR-----------SVYGVHAFNIPREN 339

Query: 69  IETYGDDF-----LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
           I+   +       +      + P+ +++I                       + +  P+ 
Sbjct: 340 IQCIREPVENLSGIQEVFEKMKPVHFENIHRRLPDHYVESFH--------LSSLLVCPIP 391

Query: 124 LGFHKNGYVIFTSEFL---MLANEVIIEAHGACYQVITDF-LELFKKRS----SAARNLT 175
           +   +   V+   +           +        +        L +  +     ++  LT
Sbjct: 392 VVGERQVAVLLLDQDGTPFQADEGTLFALDTMMSRAAKAMSARLAEPATKVGIPSSGVLT 451

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   LQ   DG  ++EI++ L LS +TV+ Y+ +   +L   NR  A+AKA+R   I
Sbjct: 452 PREQQILQFIADGLDTKEISQHLHLSEYTVSEYVRAILRRLQVPNRSAAVAKAMRQNII 510


>gi|226305431|ref|YP_002765389.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184546|dbj|BAH32650.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 219

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 3/121 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +       G         +    +   A                +    
Sbjct: 99  RGGARGYVTKTISGSELAEGVRRVAGGDAVFGPRL---AGFVLDSFTGRSNAPEPQLDPE 155

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE L +SV TV  +  +   K    NR      A R
Sbjct: 156 LDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHR 215

Query: 231 F 231
            
Sbjct: 216 R 216


>gi|213970476|ref|ZP_03398604.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301383864|ref|ZP_07232282.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060596|ref|ZP_07252137.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134766|ref|ZP_07260756.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213924794|gb|EEB58361.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 222

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 42/95 (44%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     +SA   LT RE   L L   G+++ EI EKLG
Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGASAPEALTPRERQVLGLVAGGFSNREIGEKLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|167563389|ref|ZP_02356305.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           oklahomensis EO147]
          Length = 199

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 130 DQLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVYAVER 189

Query: 232 GY 233
           G 
Sbjct: 190 GL 191


>gi|282858615|ref|ZP_06267777.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
 gi|282588619|gb|EFB93762.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
          Length = 214

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 37/84 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             C  +    LE     S     LT+ ET  L     G T++EIAEK   S HTVN +  
Sbjct: 124 FLCQHITEMLLEPASSLSFERFKLTKTETEILIDIALGMTTKEIAEKRFSSFHTVNTHRK 183

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N  +A   A+R G I
Sbjct: 184 NIFRKLSVNNANEATRYALRSGLI 207


>gi|264680819|ref|YP_003280729.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262211335|gb|ACY35433.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 214

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 20/177 (11%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128
                   P+    +       S  +L  +L         +              L    
Sbjct: 37  ARARLAEHPVAMALVDLGLPDGSGIELISQLRAADPGMGILVISAWSTEDAILSALRAGA 96

Query: 129 NGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLEL----FKKRSSAARNLTER 177
           NGYV+   + L +   +                ++I +          K       L+ R
Sbjct: 97  NGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRIIAELQPSQPTEAHKEMPPEALLSAR 156

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  DG T+ EIAE L LS +TV  ++ +   KL   +R +A+++A   G +
Sbjct: 157 EIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 213


>gi|10957401|ref|NP_051615.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460830|gb|AAF12534.1|AE001826_3 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 209

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +   A   LT RE   L+L  DG  +++IAE LG+SV TV  ++     +L A +R QA 
Sbjct: 141 RMPEAHSPLTPRELDILRLIADGLPNKDIAEALGVSVSTVKLHIQDILHRLQAADRTQAA 200

Query: 226 AKAIRFGYI 234
            KA+R G +
Sbjct: 201 VKALRAGLL 209


>gi|308172085|ref|YP_003918790.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307604949|emb|CBI41320.1| two-component response regulator RBAM_002490 [Bacillus
           amyloliquefaciens DSM 7]
 gi|328910154|gb|AEB61750.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens
           LL3]
          Length = 214

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + +S+    LT RE    +   +G +++ IA  L L+  TV  Y+     KL+  NR +
Sbjct: 146 EEPKSNLTEILTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVTNRTE 205

Query: 224 AIAK 227
               
Sbjct: 206 LTLY 209


>gi|294674324|ref|YP_003574940.1| LuxR family transcriptional regulator [Prevotella ruminicola 23]
 gi|294471985|gb|ADE81374.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23]
          Length = 197

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKL 198
           +   E++                L    +  ++  L++RE   + L   GY ++EIA+KL
Sbjct: 97  VPEPELVRSLLMLEQHAHGKGEHLPPMPAILSQKILSDREIEVMSLIVQGYINKEIADKL 156

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + + TV  +  +   KL   +       A+  GY+
Sbjct: 157 NIGLATVITHRKNIMDKLGMKSVSALTIYAVMHGYV 192


>gi|302553638|ref|ZP_07305980.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471256|gb|EFL34349.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 247

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 129 IRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 188

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 189 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 247


>gi|254693131|ref|ZP_05154959.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 3
           str. Tulya]
 gi|261213372|ref|ZP_05927653.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260914979|gb|EEX81840.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 213

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V    LE  +KRS     L+ RE   L L  +G ++ EIA +LG+S  TV  +  
Sbjct: 129 YFSSGVSEALLESGEKRS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +       AI    
Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208


>gi|271961856|ref|YP_003336052.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505031|gb|ACZ83309.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 214

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 48/109 (44%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  ++   L   V   A G      +    L  +  + A  L+ RE   L+L 
Sbjct: 100 AGATGYLLKDTQRDDLIRAVRTAARGEAVLSPSVATRLLGQVRAPADPLSARELEVLELI 159

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T+ E+A +L +S  TV ++L     KL   +R  A+A A R G +
Sbjct: 160 AQGTTNREVAARLFISEATVKSHLLHIYTKLGVNDRAAAVAVAFRRGLL 208


>gi|171319948|ref|ZP_02909024.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171094804|gb|EDT39842.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 71/245 (28%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  + +      L                
Sbjct: 60  TLANAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PNTYRGDYV 117

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116
                  D          +PI+W           +++    +   L   ++        +
Sbjct: 118 RHNHHDIDPRTLDARVCNMPIVWDLQQLRREHRERDDGPCVTPAALDGFLQTMQDDGMCS 177

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 236

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296

Query: 230 RFGYI 234
           +   I
Sbjct: 297 KLELI 301


>gi|169350169|ref|ZP_02867107.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552]
 gi|169292952|gb|EDS75085.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552]
          Length = 67

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT RE     L  + ++++EIA+ L +S  TV  ++ +   KL   +RIQA+ + +R 
Sbjct: 5   LTPREREVFTLLINNHSTKEIAQILKISEKTVRNHISNVIQKLGVDSRIQAVFELVRL 62


>gi|156743691|ref|YP_001433820.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235019|gb|ABU59802.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 221

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 20/219 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             +    L  ++  ++  +  +            + L+  +     D   +   +    G
Sbjct: 13  ADDHELVLEGLRGLLERESDMI----VVATATDGESLLAIIERERPDVVVMDLAMPTRDG 68

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              L       +P+    +       +          G                +    I
Sbjct: 69  LSCLREIRRRGMPVKVVILTAFGDGGALQSAWEMQADGFALKT-------DPPRQTIATI 121

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                  +    ++       Q     L            LT+RE   L+L  +G  + +
Sbjct: 122 RNVAHGQIVFPRVVRQAADATQAHGQSL---------LARLTQRERDVLRLLAEGMPNAQ 172

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           IAE+L +   TV  +L +   KL   NR +A     R G
Sbjct: 173 IAERLVVQESTVKYHLQNIFQKLGVTNRTEAAQVYYREG 211


>gi|145588751|ref|YP_001155348.1| two component LuxR family transcriptional regulator
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047157|gb|ABP33784.1| two component transcriptional regulator, LuxR family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 197

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            +     +L       A    LT+R+   L    +G +++ IA  L +S  TV  +LG  
Sbjct: 116 YIYQSLCDLMGLNPDEAELTQLTDRQKEILAHISNGDSNKMIAYSLNISEQTVKVHLGEI 175

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             K+   NR QA+ KA   G++
Sbjct: 176 FKKIKVFNRTQAVIKAKENGWV 197


>gi|50955085|ref|YP_062373.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951567|gb|AAT89268.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 223

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              +   +   +LT RE     LA  G ++ EIA    LS  TV  ++     KL   +R
Sbjct: 147 RAAQPVPAEFASLTSREREIFALAARGLSNAEIAGSEFLSEATVKTHISRILGKLGLRDR 206

Query: 222 IQAIAKAIRFGY 233
           +Q +  A   G 
Sbjct: 207 VQMVVYAFEHGL 218


>gi|29828913|ref|NP_823547.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|15824126|dbj|BAB69292.1| two-compnent system regulatory protein [Streptomyces avermitilis]
 gi|29606018|dbj|BAC70082.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 218

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           L     GY+  ++    L + +     +       +  + L      ++    LT RE  
Sbjct: 101 LDCGVRGYLNKSASRNDLVSSIRAVCADNIRIVLHISVEALTHIATTANCQDKLTRREIE 160

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L     ++ +I+ +L ++  TV  +LG+   KL A +R++A+ KA+  G I
Sbjct: 161 ILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGLI 214


>gi|304405956|ref|ZP_07387614.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345199|gb|EFM11035.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L     G  +++IA+ L LS  TV  Y+ +   K++   R +A  KA   G
Sbjct: 154 GLSAREVEVLHKLALGLRNQDIAKALYLSEGTVKNYISNIYSKMNVKGRREAAYKARETG 213

Query: 233 YI 234
            +
Sbjct: 214 IL 215


>gi|238059358|ref|ZP_04604067.1| sensor transduction protein [Micromonospora sp. ATCC 39149]
 gi|237881169|gb|EEP69997.1| sensor transduction protein [Micromonospora sp. ATCC 39149]
          Length = 221

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LTERE   L L   G ++ EIA ++ ++  TV  ++G    KL   +R+QA+  A
Sbjct: 152 PRLAQLTEREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLRLRDRVQAVVLA 211

Query: 229 IRFGYI 234
              G +
Sbjct: 212 YESGLV 217


>gi|145300854|ref|YP_001143695.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853626|gb|ABO91947.1| transcriptional regulator, LuxR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 200

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT RE   ++    G ++ EIA+ L +S HT+ ++L +   KL+  NR+QA++ A  
Sbjct: 142 LTAREQEIIRYLMTGASNTEIADSLFVSEHTIKSHLYNVFKKLNVRNRLQAVSWAKE 198


>gi|159037020|ref|YP_001536273.1| LuxR family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915855|gb|ABV97282.1| transcriptional regulator, LuxR family [Salinispora arenicola
           CNS-205]
          Length = 323

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 15/232 (6%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           E  + G+    L  +  RL  + +  ++       ++      ++   +    + +  + 
Sbjct: 107 EQEVQGRALDGLDAVRERLIELAHNARSE-----CLSFTTGRGQQPDTMEAEGSLNQVAL 161

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
                +   Y + F     +    +           +S    ++ +   ++       PV
Sbjct: 162 RRGVRIRNLYQESF----RNDPATLAHARWMASLGSQSRTAPTLPMRMVIVDRELALVPV 217

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
                  G +         +  V+        QV         + S   + LT +E   L
Sbjct: 218 DPNDPARGALEL------RSPGVVAGLIALFEQVWHTAKPFGDEASPDEQGLTAQERELL 271

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L   G T E  A KL +SV +V   + S T +L+A +R QA  +A R G++
Sbjct: 272 RLLAAGSTDESAARKLAISVRSVQRMMTSLTERLEAASRFQAGVQATRRGWV 323


>gi|157370683|ref|YP_001478672.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322447|gb|ABV41544.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 497

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 119 AFPVRL-GFHKNGYVIFT-SEFLMLA-----NEVIIEAHGACYQVITDFLELFKKRSSAA 171
           A  +     +    +  T  +   L       EV+ +A      ++     +        
Sbjct: 361 AVSIHDVPCYLLVMMDITERKRSELELVSAIEEVMQDASWFSQTLLEKLANVKSINKPNL 420

Query: 172 RN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                  LT RE   L L  +G   ++IA +L L+ +TV  ++     KLD  +R +AI 
Sbjct: 421 SGFSFTDLTARERDVLGLICEGLPDKKIATRLNLAPNTVRNHVAMVYSKLDVHSRSEAIV 480

Query: 227 KAIRFGY 233
            A   G 
Sbjct: 481 WARERGL 487


>gi|161830943|ref|YP_001596915.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331]
 gi|161762810|gb|ABX78452.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331]
          Length = 216

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRS--SAA 171
           G   P+RL        I  S         I   H         I   L L K     S  
Sbjct: 86  GELLPMRLLDVGVRGFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSKTTPTKSPF 145

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ R+   L L   G  +EEIA++L ++  TVN++      KL   N ++ I  A+++
Sbjct: 146 DQLSHRQMEVLLLLAKGMKAEEIAKQLHITTKTVNSHRYRMFDKLGVKNDVELIKLAVQY 205

Query: 232 GYI 234
           G I
Sbjct: 206 GVI 208


>gi|307244636|ref|ZP_07526740.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492017|gb|EFM64066.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 216

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 32/54 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+ERE   L+L  DG +++EIA KL LS  TV  Y+ S  VKLD  +R Q    
Sbjct: 159 LSEREIDVLELIADGLSNKEIAGKLYLSEGTVRNYISSILVKLDLRDRTQLAIY 212


>gi|218246750|ref|YP_002372121.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059792|ref|YP_003137680.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167228|gb|ACK65965.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589958|gb|ACV00845.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 221

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT+RE   L L   G T++EIA+ L ++  TV  ++ +   KLD  +R QA   A++ 
Sbjct: 159 PLTQREQEILALIALGKTNQEIAQTLSIATGTVRVHVHAILQKLDVRDRTQAAIIALQH 217


>gi|254254354|ref|ZP_04947671.1| regulatory protein LuxR [Burkholderia dolosa AUO158]
 gi|124898999|gb|EAY70842.1| regulatory protein LuxR [Burkholderia dolosa AUO158]
          Length = 365

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 70/245 (28%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  + D      L                
Sbjct: 124 TLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFSRDRVESLYLHEAFT--PPTYRGDYV 181

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116
                  D          +P++W           +++    +   L   ++        +
Sbjct: 182 RHNHHDIDPRTLGARVCNMPVVWDLQQLRREHRERDDGPCVTPAALDGFLQTMQDDGMCS 241

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 242 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 300

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 301 TVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 360

Query: 230 RFGYI 234
           +   I
Sbjct: 361 KLELI 365


>gi|118593225|ref|ZP_01550610.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
 gi|118434116|gb|EAV40772.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
          Length = 233

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDL 59
           +        ++++   +   L     R+ A     + + + L  P R          +  
Sbjct: 7   LKSKLRAISEANAAHHVLDILESNLRRMGA----THILITGLPMPNRPIDNLVQRFRWPD 62

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
              D       +  D  L          +W        I +       L       + + 
Sbjct: 63  QRNDGIESTSLSANDSALMLGLGSNRARVWT-------ISAGDMEHSDLLASAGEGSQVL 115

Query: 120 F-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
             PV   +    +V  +   L +    +           +   EL          L+ RE
Sbjct: 116 VIPVTELYPFQAFVFASGPALQVNKYDLSNLEALAAAAFSRLRELGVISGQRPGALSTRE 175

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+L   G T+ EIA+ L +S  TV+A+L +A+VKL+A N+   + +A+R+G I
Sbjct: 176 RKVLELTAYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231


>gi|312138597|ref|YP_004005933.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311887936|emb|CBH47248.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 65/213 (30%), Gaps = 11/213 (5%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS- 82
           +        +    I       + Q+ +     Y +                   H    
Sbjct: 14  LSRWSAELGYVAAAITYRRSGDQGQR-VLANGGYAVP-VAQYLAREFVDDTRIFDHIRVA 71

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLML 141
              P+ W+ + +  +  +       +        G +  + L   +   V+  S     +
Sbjct: 72  SGRPVCWEDVPDFELTSAVE----DVLRPSGFREGSSVALGLERGQVTSVLHVSFTRSQV 127

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            + V         Q      +  ++ S     L+ RE   L L   G ++ EIA +L +S
Sbjct: 128 DSTVRAGIEALARQCRRIVADQSERESF---RLSGREHQILALVAQGASNAEIAAELLIS 184

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  +L +   K    +R++   +A   G +
Sbjct: 185 RRTVATHLENIFAKTGTRSRVRVAVRATELGIL 217


>gi|258592851|emb|CBE69160.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 160

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LT RE   L+L   G++ ++IA  L  SV T+  +      KL   NR   +  A
Sbjct: 93  APGDRLTPREQQILRLIAQGFSDKQIARTLQRSVRTIENHAARIRQKLHIENRTGLVRFA 152

Query: 229 IRFGYI 234
            R   I
Sbjct: 153 FRNRLI 158


>gi|289768783|ref|ZP_06528161.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698982|gb|EFD66411.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 332

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V      L      AA +LT RET  L L   G ++ EIA +L ++ HTV  ++ 
Sbjct: 240 LIAEFVHARGSRL---PVPAAGDLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHIN 296

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+  +R QA+  A   G +
Sbjct: 297 RLFAKLELRDRAQAVIVAYELGLV 320


>gi|238926539|ref|ZP_04658299.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
 gi|238885485|gb|EEQ49123.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
          Length = 209

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 32/76 (42%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            F    +        LT RE         GYT  EIAE+L LSV TV+ +      KL  
Sbjct: 133 MFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAEQLHLSVKTVDTHKKHIYEKLHC 192

Query: 219 VNRIQAIAKAIRFGYI 234
             R + +  A+R G +
Sbjct: 193 SRRSELVTLALRNGLL 208


>gi|284034471|ref|YP_003384402.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283813764|gb|ADB35603.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 242

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  L      +L            + +     +   G  +   G+   VR     +  + 
Sbjct: 86  DPDLRASRVLILTTYETDEYVAQALRAGASGFI---GKGIDADGLIDAVRTIADGDALLS 142

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
             +                  + +   ++   +       LT RE   + L   G ++ E
Sbjct: 143 PAATRS------------LVARFLATPVDTAPRDVERLVALTPREREMVALVATGLSNLE 190

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IA+++ +S  TV A++  A  KL+A +R Q +A A R G 
Sbjct: 191 IADRMYVSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTGL 230


>gi|226311034|ref|YP_002770928.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226093982|dbj|BAH42424.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 873

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           H    + I   L  F+   + +    L+ERE   LQL   G ++ +IA++L L++ TV  
Sbjct: 787 HRMLPRYIEKLLAEFEPHHADSLIEPLSERELEILQLIEKGLSNRDIAQQLFLALSTVKG 846

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   KL    R +A+A+A + G +
Sbjct: 847 HNRNVFDKLQVQRRTEAVARARQLGLL 873


>gi|167570554|ref|ZP_02363428.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           oklahomensis C6786]
          Length = 233

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 164 DQLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVYAVER 223

Query: 232 GY 233
           G 
Sbjct: 224 GL 225


>gi|158520046|ref|YP_001527916.1| two component LuxR family transcriptional regulator [Desulfococcus
           oleovorans Hxd3]
 gi|158508872|gb|ABW65839.1| two component transcriptional regulator, LuxR family [Desulfococcus
           oleovorans Hxd3]
          Length = 214

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 35/72 (48%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            + +   +    LTERE   LQ+  +G  +++IAE L +SV TV  Y  S   KL   + 
Sbjct: 140 RIDQDPLTRVEELTERERQVLQMIAEGIKTKDIAESLHISVKTVETYRSSIMQKLGLFSV 199

Query: 222 IQAIAKAIRFGY 233
            +    A+R G 
Sbjct: 200 AELTKFAVREGI 211


>gi|325972574|ref|YP_004248765.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027812|gb|ADY14571.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy]
          Length = 305

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 32/50 (64%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++RE   + L  +G +++EIA+KL +S +TV  ++ +   KL+  NR+Q 
Sbjct: 250 SDREAEIVSLLVEGLSNQEIAKKLFISPNTVKTHIKNIYAKLEVNNRLQL 299


>gi|323356651|ref|YP_004223047.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273022|dbj|BAJ73167.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 221

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                   + +            +   LT+RE   L     G +++EIA  L +S HT  
Sbjct: 130 AATRALIEKYVRTTGAADVPSPVSLDALTDREREVLLHVARGRSNDEIAAHLYISPHTAK 189

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ +  +KL A +R Q +  A   G +
Sbjct: 190 THVKNTMLKLGAHDRAQLVIAAYESGLL 217


>gi|319793534|ref|YP_004155174.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315595997|gb|ADU37063.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 255

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 40/85 (47%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H   +Q          ++      LT RE+  L+    GY S EI E+LG++  TVN ++
Sbjct: 171 HRHAHQGDPAGHAPPPRQPGRDATLTPRESEILRFVACGYVSAEIGERLGITWQTVNVHI 230

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   KL   +R QA+  A+  G I
Sbjct: 231 KSIYKKLHVHSRAQAVNFAVHTGLI 255


>gi|23098290|ref|NP_691756.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22776515|dbj|BAC12791.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 207

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +  +++ +     +    L T+RE   L     G  +++IA  L +S  TV  ++ 
Sbjct: 124 LAKLLHEEYVRIANTLQARPEGLLTDREWDILIEIAKGNNNDQIALNLEISDKTVKNHVT 183

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KLD  +R  A+  A R G+I
Sbjct: 184 TILRKLDVNDRTNAMLLAFRKGWI 207


>gi|309791785|ref|ZP_07686273.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308226191|gb|EFO79931.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 205

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 37/86 (43%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
             G+    + D L   +   +AA  LT RE   L L   G  +  IA KL LS  TV   
Sbjct: 114 LAGSAAARVLDLLRRGEGAVAAADLLTPRERDILALLAQGDDNRAIALKLSLSEKTVGNR 173

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     KL   NR QA   A++ G +
Sbjct: 174 LSEIFQKLGVSNRTQAAIVAVQRGLV 199


>gi|282860900|ref|ZP_06269966.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564636|gb|EFB70172.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 231

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 113 IRGGARGYVTKTITGSDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231


>gi|255599174|ref|XP_002537168.1| Response regulator uvrY, putative [Ricinus communis]
 gi|223517249|gb|EEF25214.1| Response regulator uvrY, putative [Ricinus communis]
          Length = 112

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                   ++      +    L+ERE         G ++ EIAE L LS  TV  +L + 
Sbjct: 29  ASVAQQMAIQQLSGEQNPVDVLSEREFEVFMSLARGKSTNEIAETLFLSPRTVGTHLYNI 88

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL+A N  +    A+R G +
Sbjct: 89  KQKLNAQNSAEIALIAMRCGLL 110


>gi|149181561|ref|ZP_01860055.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1]
 gi|148850675|gb|EDL64831.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1]
          Length = 199

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               NGY++  S    LA+ +     G          EL +        LT RE   L+L
Sbjct: 93  RAGVNGYLLKDSPSEDLADSIRTVMSGKRVYA----PELIEDAYGEGNPLTVREIEVLEL 148

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             DG  ++EIA++L +   TV  Y+ +   KL   NRI+AI ++   G+
Sbjct: 149 VADGKNTKEIADELSIKTGTVRNYISTILDKLQVKNRIEAITQSKEKGW 197


>gi|110680018|ref|YP_683025.1| transcription regulatory protein degU, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456134|gb|ABG32339.1| transcription regulatory protein degU, putative [Roseobacter
           denitrificans OCh 114]
          Length = 216

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  K   A   LT RE + L     G +++++A  L +SV TV  +  +   KL   + 
Sbjct: 139 SLQPKEGEAREALTGREQTILLQLAQGKSNKDVATALDISVRTVETHRKNIKRKLGISST 198

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 199 AGLTRYAMEHGVL 211


>gi|168698046|ref|ZP_02730323.1| response regulator receiver [Gemmata obscuriglobus UQM 2246]
          Length = 232

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS-AARNLTERETSC 181
               GYV+  S    L   +   A        ++     E        +A  L++RE   
Sbjct: 98  AGARGYVLKRSAAEELVQALRAVAAGGVYLEPRLAAQLAEGPAAAPPDSAEALSQREHEV 157

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   GY ++EI  +L +SV TV  Y      KL+  +R++ +  A   G++
Sbjct: 158 LRLLALGYANKEIGARLRISVKTVETYKTRGMEKLNLRSRVELVRYAFERGWL 210


>gi|504484|gb|AAC44880.1| AcoK [Klebsiella pneumoniae]
          Length = 921

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  +   D              L+ERE   LQL  +G  ++EIA  L +S  TV  ++ 
Sbjct: 837 WADKRAPADGTPFNSGSPDIPGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIK 896

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R QA+++A+    +
Sbjct: 897 NIYAKLKVNSRTQAMSRALEMKLL 920


>gi|269796958|ref|YP_003316413.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269099143|gb|ACZ23579.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 222

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE     L   G ++ EI + L +S  TV  ++  A +K  A +R Q +  A   G 
Sbjct: 158 LTEREREITSLVAGGLSNTEIGQHLFISPATVKTHVNRAMMKTGARDRAQLVVFAYDAGL 217


>gi|254262274|emb|CAZ90598.1| Transcriptional regulatory protein uhpA [Enterobacter pulveris]
          Length = 210

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 13/164 (7%)

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142
              P+    +      E+   L  RL      F  I   +          +       L 
Sbjct: 44  SRQPVDVAVLDVAMPDENGLSLLKRLRARRPGFRAIILSIYDTPAFVQSALDAGASGYLT 103

Query: 143 ----NEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
                E +++A        H  C   +   L    + +     LT RE     L   G +
Sbjct: 104 KSCGPEELVQAVRSVGMGGHYLCADAL-RALRGGAQPAKVLEVLTPREREIFDLLVKGES 162

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + IA +L LS  TV+ +  +   KL     I+ +  A+    +
Sbjct: 163 VKAIAAQLDLSHKTVHVHRANVLGKLQCATTIELVHFALENQLL 206


>gi|251782925|ref|YP_002997228.1| two-component system response regulator [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391555|dbj|BAH82014.1| two-component system response regulator [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 198

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +        LT++E + L+L   G TS+EI++ L LS  T+  Y  S   KL   NR
Sbjct: 126 ELMENLFVNPNPLTQQEMTILRLINQGKTSKEISQLLFLSSGTIRNYSSSIFDKLGVSNR 185

Query: 222 IQAIAKAIRFGYI 234
           I+AI  A + G++
Sbjct: 186 IEAIRLANKNGWL 198


>gi|254388311|ref|ZP_05003546.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294814339|ref|ZP_06772982.1| Putative erythropoiesis-stimulating protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|326442730|ref|ZP_08217464.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197702033|gb|EDY47845.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294326938|gb|EFG08581.1| Putative erythropoiesis-stimulating protein [Streptomyces
           clavuligerus ATCC 27064]
          Length = 331

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 82/227 (36%), Gaps = 15/227 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L  +  RL ++   +K    A      + D    +  I      + +       
Sbjct: 116 VEQLIGLDAVRDRLVVLTRELKEELMAF-----SPDSALTESAITSSRPLNEELLARGVR 170

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +   Y D       +    I   +   E   +     ++     ++       PV     
Sbjct: 171 MRTIYLDSV----RNSRPSIEHANWLAELGGQVRTVAALPTRMLIVDRGTAVIPVSSDNT 226

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
             G V+ T + ++ A   + EA  A          L +  +     LT +++  L L  D
Sbjct: 227 AAGAVVLTGQGMLTALCALFEATWAAAH------PLAESTTRDPHGLTPQQSVALHLLAD 280

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+T + +A++LG+S  T          +L+A +R +A  +A++ G++
Sbjct: 281 GHTDDSVAKRLGVSPRTARRMANDLMERLEARSRFEAGVRAVQRGWL 327


>gi|154684718|ref|YP_001419879.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350569|gb|ABS72648.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + R+     LT RE    +   +G +++ IA  L L+  TV  Y+     KL+  NR + 
Sbjct: 147 EPRTKLKEILTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVSNRTEL 206

Query: 225 IAK 227
              
Sbjct: 207 TLY 209


>gi|152986923|ref|YP_001348902.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962081|gb|ABR84106.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 924

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K + +    LTERE   + LA  G ++EEI ++L L++ TV  +L +   KL   NR 
Sbjct: 853 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 912

Query: 223 QAIAKAIRFGYI 234
           QAI +A     +
Sbjct: 913 QAIRRARELSLL 924


>gi|161520265|ref|YP_001583692.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189353558|ref|YP_001949185.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160344315|gb|ABX17400.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189337580|dbj|BAG46649.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
          Length = 209

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +   R +A   LT R+   L+   +G  ++ IA++LGLS  TV A++ +    L  +NR 
Sbjct: 138 IEPPRHAAGAPLTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRT 197

Query: 223 QAIAKAIRFGYI 234
           QA A   + G I
Sbjct: 198 QAAAAGRKAGLI 209


>gi|66045180|ref|YP_235021.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255887|gb|AAY36983.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
          Length = 222

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     ++    LT RE   L L   G+++ EI EKLG
Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNREIGEKLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|311895893|dbj|BAJ28301.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              +  +  ++ A + ++              +     +        LT RET  L+L  
Sbjct: 113 PADLIAAVRVVAAGDALLAPSVTRRLIADFARNRPAPRRDPRLRLNGLTPRETEVLELIA 172

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G +++EIA  L L+  TV  ++G    KLD  +R QA+  A   G +
Sbjct: 173 RGLSNQEIAAHLVLAEQTVKTHVGRILGKLDLRDRAQAVVLAYESGLV 220


>gi|297161064|gb|ADI10776.1| two-component system regulator [Streptomyces bingchenggensis BCW-1]
          Length = 226

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 33/70 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   S    LT RET  L+    G ++  IA +L +S  TV  +L  A  KL   +R QA
Sbjct: 148 ETAGSTLAMLTMRETEVLRHVAKGRSNSAIARELKISEATVKTHLNRAMTKLGITSRAQA 207

Query: 225 IAKAIRFGYI 234
           +A     G +
Sbjct: 208 VALGYECGLV 217


>gi|261254003|ref|ZP_05946576.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP
           102891]
 gi|260937394|gb|EEX93383.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP
           102891]
          Length = 215

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    S A  +LT RE   L+    G ++ +IAE + +S  TV ++L     KL   NR+
Sbjct: 144 VDTHTSPATVDLTTREIQILRCLMVGSSNIQIAEDMFISEFTVKSHLQKIFKKLSVKNRV 203

Query: 223 QAIAKAIRF 231
           QA A A + 
Sbjct: 204 QAAAWAKQH 212


>gi|261821966|ref|YP_003260072.1| transcriptional regulator NarP [Pectobacterium wasabiae WPP163]
 gi|261605979|gb|ACX88465.1| two component transcriptional regulator, LuxR family
           [Pectobacterium wasabiae WPP163]
          Length = 210

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
              L    +    I   V         ++            A E +++A  +        
Sbjct: 71  LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDAIRSSDAFSEQV 130

Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            ++ + R       S    LTERE   LQ    G ++++IA  L +S  TV  ++ +   
Sbjct: 131 RDVLRHRIAIKETPSPFTVLTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLR 190

Query: 215 KLDAVNRIQAIAK 227
           KL+  +R+ A   
Sbjct: 191 KLNVRSRVAATVL 203


>gi|271961795|ref|YP_003335991.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504970|gb|ACZ83248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LT 175
           L    +G+++  +    +   +     G           L  +  + A          LT
Sbjct: 90  LRAGASGFMLKDAPGEEIIAAIRHVHRGDSIIAPATTRRLIGRLVAKADTDPDAVLKVLT 149

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ERE         G ++ EI  +L LS  TV  ++G    KL   +R+QA+  A   G +
Sbjct: 150 EREREVFLSLARGASNAEIGVELFLSETTVKTHVGRILTKLGLRDRVQAVVLAYESGVV 208


>gi|226304567|ref|YP_002764525.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183682|dbj|BAH31786.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 222

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                R+     LT+RET  L+L   G ++++IA +L LS  TV  ++ +   KL   NR
Sbjct: 150 APADDRAPELPRLTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANR 209

Query: 222 IQAIAKAIRFGY 233
           ++    AI  G 
Sbjct: 210 VELTRYAIEQGL 221


>gi|154503122|ref|ZP_02040182.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149]
 gi|153796116|gb|EDN78536.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149]
          Length = 206

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +ERE   ++L  DG +++EIA +L LS  TV  YL S   KLD  +R Q      R 
Sbjct: 149 SERELEIIRLIADGLSNKEIASRLFLSEGTVRNYLSSILDKLDLRDRTQVAVFYYRH 205


>gi|311895803|dbj|BAJ28211.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 209

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 42/110 (38%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++   +   L   +   A G           +  +  S    LT+RE   L  
Sbjct: 99  SAGATGYLLKAEKPEELFAAIRSAAAGRPALSPPIASRVMAQMRSPLPQLTDREQDILDQ 158

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G G  ++EIA  L +S  TV  +LG    KL A  R  A+A A     +
Sbjct: 159 LGQGLGNKEIARALFISEATVKTHLGRIYAKLGADTRSGAVAIAKERRLL 208


>gi|296123997|ref|YP_003631775.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296016337|gb|ADG69576.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 39/69 (56%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R + A +L+ERET  L+L   G+ ++EIA KL +S+ TV  Y      KL    R + +
Sbjct: 145 GRLTGAESLSERETEVLKLIAAGHMAKEIAAKLDISLKTVETYKSRGMQKLSLRGRTELV 204

Query: 226 AKAIRFGYI 234
             A++ G++
Sbjct: 205 RFAMKMGWL 213


>gi|218709897|ref|YP_002417518.1| LuxR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218322916|emb|CAV19093.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 212

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G +S+EIA+ L +S  TV  +  +   KLD  +  +    A+  G
Sbjct: 150 PLSRREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVSSG 209

Query: 233 YI 234
            +
Sbjct: 210 LV 211


>gi|212212606|ref|YP_002303542.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011016|gb|ACJ18397.1| response regulator [Coxiella burnetii CbuG_Q212]
          Length = 240

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS--AA 171
           G   P+RL        I  S         I   H         I   L L K  ++    
Sbjct: 109 GELLPMRLLEVGVRGFITKSSDSAELERAIRAVHSGQRYIGSAIASRLALSKTTAAKSPF 168

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ R+   L L   G  +E IA++L ++  TVN++      KL   N ++ I  A+++
Sbjct: 169 DQLSNRQMEVLLLLAKGMNAESIAKQLHITAKTVNSHRYRMFEKLGVKNDVELIKLAVQY 228

Query: 232 GYI 234
           G I
Sbjct: 229 GLI 231


>gi|223935483|ref|ZP_03627400.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895893|gb|EEF62337.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 233

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172
             + L    +GY++  ++   L   ++    G          +V+  F  + + R     
Sbjct: 106 VFLALEAGADGYLLKRTKPTDLRAALLDVLSGGAPMTSEIARRVVESFRRVSRNRQDTI- 164

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RE   L +   GY+++EIA+K+ LSV TV ++L     K+   +R +A+A+
Sbjct: 165 RLSAREEEVLVMLSKGYSNKEIADKIDLSVETVRSHLKHIYEKMHVRSRTEAVAR 219


>gi|152971901|ref|YP_001337010.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896480|ref|YP_002921218.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150956750|gb|ABR78780.1| putative bacterial regulatory protein, LuxR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548800|dbj|BAH65151.1| putative LuxR-family bacterial regulatory protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +           +      LTERE   L     G T+ +IA  L +S +TV  +L +   
Sbjct: 138 MHPAMYAADHASTPVENSPLTERECEILNELRCGATNLDIARALFISENTVRTHLYNVFR 197

Query: 215 KLDAVNRIQAIAKAIRF 231
           KL   NR QA++ A   
Sbjct: 198 KLSVKNRTQAVSWANEH 214


>gi|21902157|gb|AAM78432.1|AF425991_3 putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 154 YQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            ++I  FL               L+ERE   L L   G  + EIAE LGLS  T   ++ 
Sbjct: 130 ARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVS 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+A +R Q +  A   G +
Sbjct: 190 RIMGKLEARDRAQLVIVAYESGLV 213


>gi|86148053|ref|ZP_01066355.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|85834186|gb|EAQ52342.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
          Length = 212

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G +S+EIA+ L +S  TV  +  +   KLD  +  +    A+  G
Sbjct: 150 PLSRREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVSSG 209

Query: 233 YI 234
            +
Sbjct: 210 LV 211


>gi|261880312|ref|ZP_06006739.1| LuxR family transcriptional regulator [Prevotella bergensis DSM
           17361]
 gi|270333002|gb|EFA43788.1| LuxR family transcriptional regulator [Prevotella bergensis DSM
           17361]
          Length = 197

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 141 LANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
             ++ +                L    +S + + L+ RE   L L  +GY ++EIA +L 
Sbjct: 98  PEDQFVRSLLMLEQHAHAQGRNLPDMPKSLSVKELSGREIEVLTLIVEGYINKEIAHQLN 157

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + + TV  +  +   KL   +       A+  GY+
Sbjct: 158 IGLTTVITHRKNIMDKLGVKSVSALTIYAVMHGYV 192


>gi|271962480|ref|YP_003336676.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505655|gb|ACZ83933.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++       L   +   A G           + ++       L+ RE   L+L
Sbjct: 95  DAGATGYLLKACPPEELFQGIRAAARGETVLSPRVATRMMRRMRDPGPALSAREVEILEL 154

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + EIA +L ++  TV  +L     KL    R  A+  A+    I
Sbjct: 155 LASGAGNREIARRLFITEATVKTHLVHIYGKLGVDTRTAAVTAAVERRLI 204


>gi|228474840|ref|ZP_04059571.1| transcriptional regulatory protein DegU [Staphylococcus hominis
           SK119]
 gi|314935685|ref|ZP_07843037.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
 gi|228271503|gb|EEK12871.1| transcriptional regulatory protein DegU [Staphylococcus hominis
           SK119]
 gi|313656250|gb|EFS19990.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  +   + L++RE   L L   GY ++EIAEKL +SV TV A+      KL+  ++ +
Sbjct: 145 EKATNDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLNLKSKPE 204

Query: 224 AIAKAIRFGYI 234
            +  A++   +
Sbjct: 205 LVEYALKKKLL 215


>gi|29654272|ref|NP_819964.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|154706559|ref|YP_001424463.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|161830115|ref|YP_001596757.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331]
 gi|165923366|ref|ZP_02219703.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
 gi|29541539|gb|AAO90478.1| response regulator [Coxiella burnetii RSA 493]
 gi|154355845|gb|ABS77307.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|161761982|gb|ABX77624.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331]
 gi|165916692|gb|EDR35296.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS--AA 171
           G   P+RL        I  S         I   H         I   L L K  ++    
Sbjct: 86  GELLPMRLLEVGVRGFITKSSDSAELERAIRAVHSGQRYIGSAIASRLALSKTTAAKSPF 145

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ R+   L L   G  +E IA++L ++  TVN++      KL   N ++ I  A+++
Sbjct: 146 DQLSNRQMEVLLLLAKGMNAESIAKQLHITAKTVNSHRYRMFEKLGVKNDVELIKLAVQY 205

Query: 232 GYI 234
           G I
Sbjct: 206 GLI 208


>gi|94314355|ref|YP_587564.1| LuxR family LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93358207|gb|ABF12295.1| ATP-dependent transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 904

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 48/100 (48%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++   +  E ++    AC  +      +   R      LT +E   LQL  +GY++  I
Sbjct: 804 GAQRDPVLAEFVMRLVQACGPLEESPEPIAGDRPQLLDPLTPKEIRVLQLLAEGYSNSAI 863

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AEKL +S  TV  +L +   K+ A +R QA+A A R G I
Sbjct: 864 AEKLFVSDSTVRTHLRNINNKICAHSRTQAVAIARRLGVI 903


>gi|239981289|ref|ZP_04703813.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
 gi|291453147|ref|ZP_06592537.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
 gi|291356096|gb|EFE82998.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
          Length = 211

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 48/109 (44%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V   A G           L ++  +    L+ RET  L L 
Sbjct: 101 AGATGYLLKDAPPEELAEAVRTAAAGRTTLAPAVADRLLRRMRTPGTALSRRETEVLGLV 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G ++  I+E+L LS  TV ++L     KL   +R  A+A A+  G I
Sbjct: 161 AEGMSNLRISERLHLSQATVKSHLVHIYAKLGVDSRTAAVAAALERGLI 209


>gi|239943004|ref|ZP_04694941.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989462|ref|ZP_04710126.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446476|ref|ZP_06585866.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349423|gb|EFE76327.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A+   + A     ++IT+F +L +     A      LTERET  L 
Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAETPRPPALARIGDLTERETEVLV 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA  L ++  T+  ++    VKL   +R QA   A     +
Sbjct: 169 LIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|229820968|ref|YP_002882494.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566881|gb|ACQ80732.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 208

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
             L  +  S    LT RE   L+L   G +++++A +L LS  TV  +L     KL   +
Sbjct: 133 RRLLGRMRSPGLALTRRELEVLELVARGRSNDDVARELFLSRATVKTHLAHVYDKLGVDS 192

Query: 221 RIQAIAKAIRFGYI 234
           R  A+A A + G +
Sbjct: 193 RTAAVAVARQRGLL 206


>gi|332703486|ref|ZP_08423574.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553635|gb|EGJ50679.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 213

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 20/186 (10%)

Query: 59  LDSGDIPNILIETYGDDFLFH-FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117
            +        +       L     S  LP  W    +     +   L        L  A 
Sbjct: 34  QEFSQADTAQVADSRRPLLLWDCLSNNLPKFWTMCSQRAENGNGPCL-------ALINAP 86

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAA 171
               + L   +NG      E             ++        +V++ F+   +K    A
Sbjct: 87  HELTLELQALRNGADGLFRECDPPDLLIKGIASILHGDLWYSREVLSRFVRDERKVRPQA 146

Query: 172 ------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT RE   L+    G ++EEIA+ L +S  TV  +  +   K+   NRIQA 
Sbjct: 147 TQSADTSTLTPREREVLERIAAGASNEEIAKNLFISPSTVKTHAYNIYAKIRVPNRIQAA 206

Query: 226 AKAIRF 231
             A++ 
Sbjct: 207 LWAVQN 212


>gi|182437202|ref|YP_001824921.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777832|ref|ZP_08237097.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465718|dbj|BAG20238.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658165|gb|EGE43011.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 222

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A+   + A     ++IT+F +L +     A      LTERET  L 
Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAEAPRPPALARIGDLTERETEVLV 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA  L ++  T+  ++    VKL   +R QA   A     +
Sbjct: 169 LIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|328885463|emb|CCA58702.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 222

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195
            ++A    + A     ++I +F    ++R   +  L   TERE   L L G G +++EIA
Sbjct: 118 RVVARGDALIAPAVTRRLIAEFAGRAERRPDPSPRLNALTEREREVLGLVGAGLSNDEIA 177

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L LS  T   ++     KL   +R Q +  A   G I
Sbjct: 178 GRLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGMI 216


>gi|303246118|ref|ZP_07332399.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492514|gb|EFL52385.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 227

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
            +           ++            QV+    E  ++RS         LT RE   L+
Sbjct: 108 GSAPASLVHALDAVSRGDRYLDGAIVPQVLLKLDEYAERRSRPVDPAYDTLTRREQQILR 167

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G     IA +L +S  TV  +  +   KL   N  + +  A+R G I
Sbjct: 168 LLAEGRGVATIAAELFISRKTVENHRSNIFGKLSFSNMAELVHYAVRMGII 218


>gi|255262411|ref|ZP_05341753.1| transcriptional regulator, LuxR family [Thalassiobium sp. R2A62]
 gi|255104746|gb|EET47420.1| transcriptional regulator, LuxR family [Thalassiobium sp. R2A62]
          Length = 253

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 67/232 (28%), Gaps = 11/232 (4%)

Query: 7   TGKKSSSLQEL-SPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDI 64
           T   + SL+EL       +                  +        +  L N   +  + 
Sbjct: 10  TITNAQSLEELWQQHCDKMAT-YGFDRLIYGYTRQRTNKSLGDIEDMVILTNQPPEYMNQ 68

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES---SGQLSVRLEGGLLPFAGIAFP 121
                       +           W  IQ++    +   +    +     +    G    
Sbjct: 69  FLDAGLYDDAPMVNWALENAGACSWSWIQDQIEQGAFSQAEMDVIEFNQKMNTTGGYTVS 128

Query: 122 ---VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTE 176
              V         +    +    A + +   HG    V+ + L L          R LT 
Sbjct: 129 LKSVSARSKGAIALTARQDVSQEAIDQVWHRHGTDLIVMNNVLHLKILTLPHFGGRPLTS 188

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           R+   L+  GDG T+++IA  L  +  TV  +L  A   L      QA+ KA
Sbjct: 189 RQREVLEWVGDGKTTQDIATILLRTSATVEKHLRLARDALGVETTAQAVLKA 240


>gi|240142442|ref|YP_002966952.1| hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens
           AM1]
 gi|240012386|gb|ACS43611.1| Hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens
           AM1]
          Length = 266

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 9/231 (3%)

Query: 11  SSSLQELSPRLHLIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           S+ L +L+ +L    +R +A     +L  ++ A  +   +        +  D     +  
Sbjct: 37  STGLDDLARQLDAAADRDRAHRAFGSLAEVSGAARWALAEMRRGGEGGFVFDVLASSSAG 96

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-----FAGIAFPVR 123
            +             +L   W++     +  SS   S+      L       A    P+ 
Sbjct: 97  GDAPIRTVGPCAEDRVLARTWRARDAIELRPSSAGASIAAGLEALLGAVADAAIAVLPID 156

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                   +   +        V+               +  +       +L+ RE   LQ
Sbjct: 157 SPDPSRRVLGVAAAGEGADIRVLRRGFALYGAFFARLRK--EANLPTRVDLSRREIEVLQ 214

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G  ++ IA +L +S HTV  ++  A +KLDA N   A+A A+R G I
Sbjct: 215 RCAHGLKTDAIAAELEVSAHTVREHIDRARLKLDARNLSHAVALAMRAGLI 265


>gi|159185689|ref|NP_357289.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159140823|gb|AAK90074.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 256

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              +      L   RS  A  LT RE   L L   G  ++ IA++L LS +TV  ++ + 
Sbjct: 168 NAVIANRADALAASRSEVA-ALTTREVQILDLLCKGTQNKIIADRLHLSENTVKVHVRNI 226

Query: 213 TVKLDAVNRIQAIAK 227
             K++  NR +A ++
Sbjct: 227 YKKMNVRNRTEAASR 241


>gi|126739109|ref|ZP_01754803.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126719726|gb|EBA16434.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 214

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +  K       LT RE + L     G +++E+A  L +SV TV  +  +   KL   + 
Sbjct: 135 AMAPKEGETREALTGREQTILLELAQGKSNKEVALHLDISVRTVETHRKNIKRKLGISST 194

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 195 AGLTRYALEHGVL 207


>gi|120403820|ref|YP_953649.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956638|gb|ABM13643.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 207

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G    V+ +F  + ++ S A   LTERET  L+    G T+++IA +L LS  TV  ++ 
Sbjct: 124 GLAGLVLGEFRRI-ERDSPAGPTLTERETEILRHVAKGLTAKQIASRLSLSHRTVENHVQ 182

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   NR++    AI  G 
Sbjct: 183 ATFRKLQIGNRVELARYAIEHGL 205


>gi|317124103|ref|YP_004098215.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588191|gb|ADU47488.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 238

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L     G ++ E+A +L +S  TV  +LGSA  KL   NR QA   A R G 
Sbjct: 178 LTERERDVLAGLARGLSNAELARELFVSETTVKTHLGSAFAKLGVDNRAQAAVLADRAGL 237

Query: 234 I 234
           +
Sbjct: 238 L 238


>gi|296163555|ref|ZP_06846295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. Ch1-1]
 gi|295886202|gb|EFG66080.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. Ch1-1]
          Length = 239

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 10/222 (4%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           EL P +        A  F   +++   D    +     L     +   + N       D 
Sbjct: 16  ELIPLVRDAIRSKGAEWFVFVSLH-PTDHSASRSTHRFLIGCRPEWCQLYNANRWYLTDP 74

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF-HKNGYVIF 134
            L +  S   P++   +   TV     +  + +       +    P       + G +  
Sbjct: 75  CLDYARSNTAPVLGSELPVRTV---GQKRMLEVAAEHGFCSTFLIPAHASEKGRIGALYL 131

Query: 135 TSEFLMLA-----NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
            S            E          +++       ++ +     L+ ++   +     G+
Sbjct: 132 GSSTKPEEGEPKLREGRAFFRALALELLDWSSRAVREDAIRKCGLSHQDVQLIGFVRSGF 191

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +  IA++L +S  TV         K+   +   A+  A   
Sbjct: 192 NAGAIADELKVSSTTVYRQFQRINEKIGVSHITAAVRFAEEN 233


>gi|320011831|gb|ADW06681.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 520

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDG 188
               S    +     + A     +++  F       +   R   +LT RE   L L   G
Sbjct: 403 EHLASAVRTVRTGDALLAPAITRRLVQRFARHGGDTADLHRDLASLTPRELEVLGLLARG 462

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ E+A +L L+  TV  ++     KL   +R+QA+  A   G +
Sbjct: 463 LSNAELAARLHLAETTVKTHVARVLAKLGLRDRVQAVIVAYETGLV 508


>gi|256395191|ref|YP_003116755.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361417|gb|ACU74914.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 217

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 63/225 (28%), Gaps = 20/225 (8%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ-----QLICELHNYDLDSGDIPNIL 68
             +       +   +    + +       +   R+       +  L              
Sbjct: 3   ADDHPMWRDAVARDLAEAGYDVVATAGDGEEAVRRGTAARPQVVVLDMQMPRLSGAEVTA 62

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +              +   +       +   ++ G + +  +          
Sbjct: 63  RLVAADPDVK-------------VLVLSASGEQQDVLQAVKAGAIGY--LVKSASREELL 107

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                      +    +     G   ++           ++    LT+RET  L+L   G
Sbjct: 108 AAVERIAVGDPVFTPGLAGLVLGEFRKLAMVPPGAGAGTAADTPRLTDRETEVLRLVAKG 167

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            + ++IA++L LS  TV  ++ +   KL   NR++ +  AI  G 
Sbjct: 168 LSYKQIADRLVLSHRTVQNHVQNTLNKLQLHNRVELVRYAIAQGL 212


>gi|269956411|ref|YP_003326200.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305092|gb|ACZ30642.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 220

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 35/67 (52%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             A  +LTERE   L L G G ++ EIA++L +S HT   ++     KL A +R Q +  
Sbjct: 149 PQALEHLTEREVEILTLVGSGLSNAEIADRLVISPHTAKTHVNRVMTKLHAHDRAQLVIA 208

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 209 AYENGLV 215


>gi|159039748|ref|YP_001539001.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157918583|gb|ABW00011.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 270

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + +  +  LTERE   L    +G ++ EI  +L +S  TV  +      KL A +R  A+
Sbjct: 201 REARPSVGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAV 260

Query: 226 AKAIRFGYI 234
           A   R G +
Sbjct: 261 AAGFRAGLV 269


>gi|296113282|ref|YP_003627220.1| LuxR family transcriptional regulator [Moraxella catarrhalis RH4]
 gi|295920976|gb|ADG61327.1| LuxR family transcriptional regulator [Moraxella catarrhalis RH4]
 gi|326560270|gb|EGE10658.1| LuxR family transcriptional regulator [Moraxella catarrhalis 7169]
 gi|326561965|gb|EGE12298.1| LuxR family transcriptional regulator [Moraxella catarrhalis
           46P47B1]
 gi|326563646|gb|EGE13898.1| LuxR family transcriptional regulator [Moraxella catarrhalis
           103P14B1]
 gi|326565275|gb|EGE15460.1| LuxR family transcriptional regulator [Moraxella catarrhalis
           12P80B1]
 gi|326566412|gb|EGE16562.1| LuxR family transcriptional regulator [Moraxella catarrhalis BC1]
 gi|326570220|gb|EGE20265.1| LuxR family transcriptional regulator [Moraxella catarrhalis BC8]
 gi|326570957|gb|EGE20981.1| LuxR family transcriptional regulator [Moraxella catarrhalis BC7]
 gi|326573253|gb|EGE23221.1| LuxR family transcriptional regulator [Moraxella catarrhalis
           101P30B1]
 gi|326575846|gb|EGE25769.1| LuxR family transcriptional regulator [Moraxella catarrhalis CO72]
 gi|326576930|gb|EGE26836.1| LuxR family transcriptional regulator [Moraxella catarrhalis O35E]
          Length = 213

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              + V     E  L +++ S    L+ERE     +  +  ++++IA++L +S  TVN Y
Sbjct: 125 YFSHDVAEQLAETVLGEQKESPFDALSEREKQVAMMVVNCQSTQQIADQLFVSAKTVNTY 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL   + ++    AIR G +
Sbjct: 185 RYRIFDKLGIDSDVKLTHLAIRHGLV 210


>gi|253987949|ref|YP_003039305.1| LuxR family transcriptional regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779399|emb|CAQ82560.1| similar to luxr family transcriptional regulators [Photorhabdus
           asymbiotica]
          Length = 251

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 76/235 (32%), Gaps = 26/235 (11%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            +  ++ +     L  ++  I   N  +Y     +      + + +    + D  +    
Sbjct: 12  IESVATREFYPNLLTWLKQFIAFDNAIVYAFGQGVP----PRCLTKAEKKNSDVVNQLYQ 67

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D F     +G    ++   +   V        +               ++L   
Sbjct: 68  QGAYLQDPFYQALTNGAETDLFTLRELAPVGFYHTDYYLNFYSKTGWQDEAGVLLKLSPQ 127

Query: 128 KNGYVIFTSEFLML--------ANEVIIEAHGACYQVITDFLELFKKRSSAAR------- 172
           +   + F +E  +L        +   ++E   +  ++  + +     ++ AA        
Sbjct: 128 RQLGLFFGNENRLLLIQKQHKKSLRTVLEIIRSVARLHDEMML----QAPAAEMVCLDTQ 183

Query: 173 ---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               LT RE   ++L   G  S +IAEKL +S  TV  +  +   KL   ++ + 
Sbjct: 184 IRYALTPRECEIVELILQGKGSPQIAEKLFISTGTVKNHRKNIYQKLQIRSQAEL 238


>gi|229590397|ref|YP_002872516.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229362263|emb|CAY49165.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 217

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     S    +LT RE   L L  +G ++ +I E LG
Sbjct: 120 RVAAGEEALNTAVSARLLRRMTERNAAGSLPTEHLTPRERQVLGLVANGMSNRQIGEHLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + I  G +
Sbjct: 180 ITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLV 214


>gi|329937421|ref|ZP_08286979.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329303297|gb|EGG47184.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 229

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 133 IFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +      + + E ++            +++               LT RE   + +A +G
Sbjct: 110 LLAGLRTVASGEALLSPAATRTLIANFLMSPSPGAQLASPKRLSELTARERETMAMAAEG 169

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIAE L LS  TV  ++  A  KL A +R Q +  A + G +
Sbjct: 170 MSNSEIAEALVLSPLTVRTHIYRAMAKLGARDRAQLVVIAYQTGLV 215


>gi|148985585|ref|ZP_01818774.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147922305|gb|EDK73426.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800762|emb|CBW33411.1| response regulator protein [Streptococcus pneumoniae OXC141]
          Length = 199

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G +++EIA++L  S 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYFSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T+  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|158318087|ref|YP_001510595.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113492|gb|ABW15689.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 244

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+L  +G ++ EIA +L L   TV +++ S   KL A +R QA+  A   G+
Sbjct: 179 LTDREADVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVLAKLGARDRTQAVIIAYESGF 238

Query: 234 I 234
           +
Sbjct: 239 V 239


>gi|302864805|ref|YP_003833442.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302567664|gb|ADL43866.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 220

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                          LTERE   L L   G +++EIA +L LS  T   ++     K   
Sbjct: 137 AARTRHPDPGPRLNALTEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRV 196

Query: 219 VNRIQAIAKAIRFGY 233
            +R Q +  A   G 
Sbjct: 197 RDRAQLVVLAYESGL 211


>gi|320009015|gb|ADW03865.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 231

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 113 IRGGARGYVTKTITGTDLIDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231


>gi|117165074|emb|CAJ88627.1| putative two component response regulator-like [Streptomyces
           ambofaciens ATCC 23877]
          Length = 223

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + D L    +      +LT RE   L L  +G ++++IA +LG+S H V   + S  +KL
Sbjct: 144 LLDRLRESGQHRPREVSLTARENEVLLLLAEGMSNKQIARRLGISSHGVKRIVASLLLKL 203

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A NR  A+  AI+ G I
Sbjct: 204 GAPNRTAAVVTAIQNGLI 221


>gi|323344011|ref|ZP_08084237.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323094740|gb|EFZ37315.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 213

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 43/98 (43%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           + +  A    +       Q +T+ L + + R      LT  ET  L+    G T+ EIAE
Sbjct: 109 QEIREALSFAMRGRRFICQRMTELLLVPETREQEQVKLTRTETEVLKDIALGMTTREIAE 168

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           K   S HTVN +  +   KL   N  +A   A+R G +
Sbjct: 169 KRFSSFHTVNTHRKNIFRKLGVNNVHEATKYALRAGLV 206


>gi|309792191|ref|ZP_07686663.1| two-component transcriptional regulator, LuxR family protein
           [Oscillochloris trichoides DG6]
 gi|308225732|gb|EFO79488.1| two-component transcriptional regulator, LuxR family protein
           [Oscillochloris trichoides DG6]
          Length = 204

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE   +Q   +GY++++IA +L LS+ TV  Y   A  KL    R + +  AI  G
Sbjct: 141 ELSEREREVVQRVVEGYSNKDIALQLNLSIKTVETYRARALDKLGLSGRAELVRYAIEQG 200

Query: 233 Y 233
           +
Sbjct: 201 W 201


>gi|307326772|ref|ZP_07605964.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887535|gb|EFN18529.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 206

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 41/113 (36%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V  G             L  A              +   L    +       L+ERET+ 
Sbjct: 94  VEAGAAGYLLKDMARAELAEAVRSAARGETVLAPSVAARLMDQLRDRPERPRLSERETAV 153

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G T+ EI  +L +   TV  +L  A  KL   +R  A+  A+R G +
Sbjct: 154 LRLVAQGCTNAEIGRRLFIGESTVKTHLLRAFGKLGVDDRTAAVTSAMRLGLL 206


>gi|255523112|ref|ZP_05390084.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|255513227|gb|EET89495.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
          Length = 821

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L   G    EIA KL +S  TV  +L +   KL    + +AI  A  +G
Sbjct: 760 KLSQREIEILTLTVKGLKRSEIAAKLNISEGTVKTHLQNIYKKLQVSGKFEAIKIAQMYG 819

Query: 233 YI 234
            +
Sbjct: 820 IV 821


>gi|113954975|ref|YP_729804.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882326|gb|ABI47284.1| possible DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 262

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSS-AARNLTERETS 180
               V+F S       + I              + + +      K +      L+ERE  
Sbjct: 145 GADGVMFVSSMGTGDGDFINALRTTNNGGIYYPRAVLEAATANVKPAPILVDPLSERELE 204

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +Q    G  + EIA+ L +S  TV +++ +   KL   +R QA   A+  G +
Sbjct: 205 VIQCIICGMKNTEIADSLLVSAETVKSHVSTVIHKLGVRDRTQAAVFALTHGLV 258


>gi|22299408|ref|NP_682655.1| transcriptional regulator [Thermosynechococcus elongatus BP-1]
 gi|22295591|dbj|BAC09417.1| transcriptional regulator [Thermosynechococcus elongatus BP-1]
          Length = 93

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L+L   G T+++IA KL +S  TV+ ++ +  +K  + NR+  +  A+ +G 
Sbjct: 14  LSERELQVLELVAAGLTNQDIAAKLDISKRTVDNHISNILMKTKSENRVALVRWALAWGK 73

Query: 234 IC 235
           +C
Sbjct: 74  VC 75


>gi|294788302|ref|ZP_06753545.1| nitrate/nitrite response regulator protein NarL [Simonsiella
           muelleri ATCC 29453]
 gi|294483733|gb|EFG31417.1| nitrate/nitrite response regulator protein NarL [Simonsiella
           muelleri ATCC 29453]
          Length = 220

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +  + +         V +          SA   LT RE   L     G++++ IA +L
Sbjct: 120 RAVDGDNVFSPEMTARLVQSLIRPHNAGTGSALDTLTPRELEILGHLAAGHSNKIIARQL 179

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            L+  T+  ++ +   KL+  +R+QA   A++ 
Sbjct: 180 DLAEFTIKVHVQNILRKLELSSRVQAAVYAVQH 212


>gi|320007637|gb|ADW02487.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 210

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 50/109 (45%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V   A G           L  +  + A+ LT RE   LQL 
Sbjct: 100 AGAGGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAQALTRRELEVLQLV 159

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G ++++I+++L LS  TV ++L     KL   +R  A+A A     I
Sbjct: 160 GEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 208


>gi|256391489|ref|YP_003113053.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357715|gb|ACU71212.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 253

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 68/209 (32%), Gaps = 7/209 (3%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L +++  + A        +       R +    ++       +   +L     D  + 
Sbjct: 49  RLLPVLRRTVPADTVLWLAAHERHPATWRAEPPGAVN------AEQAALLAAHADDPLMA 102

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
               G      +S  +         +   L   L     +   VR    +   V+F    
Sbjct: 103 AAWHGPGTATRRSDLQTDHEFHRLPVFPALFAPLGARRQLVMAVRPDEERRIVVLFNRAS 162

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
                  +  A    +++    L  F    +    ++ RE   L L   G T  +IA +L
Sbjct: 163 PDFTQHDVAVAEAVRHRI-GRALAPFGGPGARREKVSPREADVLDLLCRGLTDRQIATRL 221

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G+S  TV+ +L  A VKL    R+QA  +
Sbjct: 222 GISPRTVDKHLEHAYVKLGVRCRVQAATR 250


>gi|212212758|ref|YP_002303694.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011168|gb|ACJ18549.1| response regulator [Coxiella burnetii CbuG_Q212]
          Length = 216

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRS--SAA 171
           G   P+RL        I  S         I   H         I   L L K     S  
Sbjct: 86  GELLPMRLLDVGVRGFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSKTTPTKSPF 145

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ R+   L L   G  +EEIA++L ++  TVN++      KL   N ++ I  A+++
Sbjct: 146 DQLSHRQMEVLLLLAKGMKAEEIAKQLHITAKTVNSHRYRMFDKLGVKNDVELIKLAVQY 205

Query: 232 GYI 234
           G I
Sbjct: 206 GVI 208


>gi|111024941|ref|YP_707361.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|40787253|gb|AAR90170.1| putative two-component system response regulator [Rhodococcus sp.
           DK17]
 gi|51338943|dbj|BAD36797.1| hypothetical protein [Rhodococcus sp. RHA1]
 gi|110823920|gb|ABG99203.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 212

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142
             LP+    +        + +L  RL         + F           ++       L 
Sbjct: 50  RTLPVDVILLDLRLPDIPAPELIPRLRRVAPHARILLFTAFADHGAIDLLMEAGADGCLV 109

Query: 143 -----NEVIIEAHGAC--YQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTS 191
                 +     H      +V+   L   ++  ++       LT RE   L+ A  G ++
Sbjct: 110 KDISGQDFATAIHRVSGGIRVVDPRLAGSRRVVTSEALYRAGLTRREYEVLRFAAMGNSN 169

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA++L L+ +TV  YL SA  KL+A NR++AIA+A     +
Sbjct: 170 PEIAQELSLARNTVKTYLQSAMQKLNARNRVEAIARAHELRLL 212


>gi|328884073|emb|CCA57312.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 206

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               GY++       L   +   A G            + + R +A  +LT+RE   L  
Sbjct: 96  AGATGYLLKAERPEELFAAIHSAAQGRTALSPPVASRVMDRMRGAAGPSLTDRERDILGQ 155

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G G  + EIA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 156 LGRGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKERRLL 205


>gi|299069943|emb|CBJ41227.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CMR15]
          Length = 252

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 13/223 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIK--ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            + ++ +++      +  ++    +  L                    +Y  +       
Sbjct: 12  AAETVHDIAAFKAWTREFVRPVVDHQHLACGFGRTTSSGVAMDYVVTVDYPNEHLLAIRN 71

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                    +  + +   P+ +         E +    +            A  V    +
Sbjct: 72  TAGGLDTPIMRRWLATRRPVYF---DAAAPWEGTDPAWLEKFVKHGLRNCAADAVFDEVN 128

Query: 128 KNGYVIFTSEFLMLA--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
             G          +          ++    HGA  + + +     +K S A   L+ERE 
Sbjct: 129 CVGTYYSFHALPSVEPGCLDAMLRDLTPVMHGALLRAVANVESDQQKASEALATLSERER 188

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
               L G G ++ EIA+ +  S +TV  YL S   K    NR+
Sbjct: 189 EVALLIGQGKSNAEIAQLVCKSENTVKHYLSSIMDKTGCENRV 231


>gi|284030413|ref|YP_003380344.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283809706|gb|ADB31545.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 208

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 139 LMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              + + +++A         V    L L   R+     LTERE   L+L G G T++E+A
Sbjct: 111 TDASPDDLVDAVREVADGRPVFDVSLALAALRAG-DNPLTERECEVLRLIGTGATAQEVA 169

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + L LS  TV  YL     K  A +RI+AI KA   G+I
Sbjct: 170 QILCLSPGTVRNYLSRILSKTGARSRIEAIRKAQDAGWI 208


>gi|282862547|ref|ZP_06271609.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562886|gb|EFB68426.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           L     G +  ++    L + +     +       V  + L      +     LT RE  
Sbjct: 101 LDCGVRGCLNKSASRTDLVSSIRAVCADNIRIVLHVSVEALTHIASTADCPDVLTRREME 160

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L     ++ +I+ +L ++  TV  +LG+   KL A +R++A+ KA+  G I
Sbjct: 161 ILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGLI 214


>gi|206577056|ref|YP_002240258.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342]
 gi|206566114|gb|ACI07890.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342]
          Length = 921

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  +V  D              L+ERE   LQL  +G  ++EIA  L +S  TV  ++ 
Sbjct: 837 WADKRVPADGTPFNSGSPDIHGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIK 896

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R QA+++A+    +
Sbjct: 897 NIYAKLKVNSRTQAMSRALEMKLL 920


>gi|194017154|ref|ZP_03055766.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|194011022|gb|EDW20592.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 199

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S    LTERE S L+L  DG  ++EIA++L +   TV  Y+     KL+  NR
Sbjct: 126 ELMEDLYSDENPLTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITRSKEKGW 197


>gi|157693347|ref|YP_001487809.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682105|gb|ABV63249.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 199

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S    LTERE S L+L  DG  ++EIA++L +   TV  Y+     KL+  NR
Sbjct: 126 ELMEDLYSDENPLTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITRSKEKGW 197


>gi|78778542|ref|YP_396654.1| LuxR family transcriptional regulator [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712041|gb|ABB49218.1| transcriptional regulator, LuxR family [Prochlorococcus marinus
           str. MIT 9312]
          Length = 92

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   + L  DG T++EIA KL +S  TV+ ++ +   K  + NR+  +  A+  G
Sbjct: 15  GLSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNG 74

Query: 233 YIC 235
            IC
Sbjct: 75  KIC 77


>gi|29654109|ref|NP_819801.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|153208494|ref|ZP_01946778.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154707387|ref|YP_001424215.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|212218270|ref|YP_002305057.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|29541375|gb|AAO90315.1| response regulator [Coxiella burnetii RSA 493]
 gi|120575950|gb|EAX32574.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154356673|gb|ABS78135.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|212012532|gb|ACJ19912.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 216

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRS--SAA 171
           G   P+RL        I  S         I   H         I   L L K     S  
Sbjct: 86  GELLPMRLLDVGVRGFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSKTTPTKSPF 145

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ R+   L L   G  +EEIA++L ++  TVN++      KL   N ++ I  A+++
Sbjct: 146 DQLSHRQMEVLLLLAKGMKAEEIAKQLHITAKTVNSHRYRMFDKLGVKNDVELIKLAVQY 205

Query: 232 GYI 234
           G I
Sbjct: 206 GVI 208


>gi|87302655|ref|ZP_01085472.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701]
 gi|87282999|gb|EAQ74956.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701]
          Length = 237

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 37/75 (49%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            L     R  A   L+ RE   L+L   GY + +IA ++ LSV TV ++L SA  KL A 
Sbjct: 155 ALACRASRDPAGPGLSARELEVLELVVQGYQNPQIASRMHLSVETVRSHLKSAFQKLGAT 214

Query: 220 NRIQAIAKAIRFGYI 234
            R  A   A+  G +
Sbjct: 215 GRTHAAVMAVCQGLV 229


>gi|296161929|ref|ZP_06844729.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295887805|gb|EFG67623.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 229

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 44/157 (28%), Gaps = 14/157 (8%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANE 144
                         L   L         IA  V         +I                
Sbjct: 67  DYAMPSGEYGDGLVLFEYLRRHFPKVGIIALTVMDSPAVIRALISAGVTSILSKSDATGH 126

Query: 145 VIIEAHGACYQVITDFLEL-------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
           +I   H         +L           + +   + L+ RE    +L   G +  +IA +
Sbjct: 127 IITAIH--SSYAGGSYLSPTIEQVVNNSETTGDQQPLSPRELEVARLFASGLSMTDIARR 184

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  S  TV+    +A  KL   N ++ I  AI  G I
Sbjct: 185 LNRSKQTVSTQKTTAMRKLGVANDVELIRYAIESGLI 221


>gi|221195955|ref|ZP_03569002.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
 gi|221202628|ref|ZP_03575647.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221176562|gb|EEE08990.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221182509|gb|EEE14909.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
          Length = 244

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72
             +    LH   +   A  FA  +           +    EL                  
Sbjct: 12  AADWQRALHACVDAFDA--FASPSAIVFYRLDASGEPADFELFGMPESMHRTYVA-RYRM 68

Query: 73  GDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            D        +G   ++  + Q       +     R          +   +R      G 
Sbjct: 69  LDPLHPSRCAAGARTVVTLASQLPDECRDASAYWTRFLRRHGVADVVEIWLRDDGRTVGA 128

Query: 132 VIFTSEFLMLAN---------------EVIIEAHGACYQVITDFLELFKK--RSSAARNL 174
                     A                + +          ++  L   +   R      L
Sbjct: 129 FSLLRFDTRGAARGGDGASARFAPGEIDALARLQPLAEAALSPLLRTRRGIHRIECEARL 188

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           T RE    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 189 TYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239


>gi|153208911|ref|ZP_01947130.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218476|ref|YP_002305263.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|120575632|gb|EAX32256.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012738|gb|ACJ20118.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 217

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS--AA 171
           G   P+RL        I  S         I   H         I   L L K  ++    
Sbjct: 86  GELLPMRLLEVGVRGFITKSSDSAELERAIRAVHSGQRYIGSAIASRLALSKTTAAKSPF 145

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ R+   L L   G  +E IA++L ++  TVN++      KL   N ++ I  A+++
Sbjct: 146 DQLSNRQIEVLLLLAKGMNAESIAKQLHITAKTVNSHRYRMFEKLGVKNDVELIKLAVQY 205

Query: 232 GYI 234
           G I
Sbjct: 206 GLI 208


>gi|37523666|ref|NP_927043.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214671|dbj|BAC92038.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 225

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFH-KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
                     +G  F   L             + + L  EV  +     +      ++  
Sbjct: 99  WVFRAMQSGASGYVFKTHLAAQLCAAITTVLRDEIYLPPEVATQFFRLFHYYAGHTVQSR 158

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +       LTERE   L     G +++EIA  L +++ TV A+L +   KL   +R QA
Sbjct: 159 SRIH-----LTEREQEVLHWLVRGASNDEIARNLYITIATVKAHLSAIFEKLQVTSRTQA 213

Query: 225 IAKAIRFGYI 234
           I  A++ G +
Sbjct: 214 IVAALKLGLV 223


>gi|290958054|ref|YP_003489236.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647580|emb|CBG70685.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 297

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 179 IRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 238

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 239 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 297


>gi|159897476|ref|YP_001543723.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890515|gb|ABX03595.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 799

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 72/221 (32%), Gaps = 11/221 (4%)

Query: 23  LIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDL-DSGDIPNILIETYGDDFLFH 79
             Q+  +A++F  A   I   L  P  +                    L   Y    L  
Sbjct: 574 AQQDYDQAQHFIEASIAIAEQLHDPWHRAEGLHQLGLIALARQQHDQALTALYESFSLRR 633

Query: 80  FNSGLLPIIWQSIQE-ETVIESSGQLSVRL-----EGGLLPFAGIAFPVRLGFHKNGYVI 133
               LLP+I  S++    V ++    S  +        L   +G   P      +   + 
Sbjct: 634 -QHQLLPMIASSLEALARVAQAQHHWSWAVQLSSRAASLRLQSGEPMPATEQRIQQQVLD 692

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
              + L           G   ++    L     ++     LT+RE   L L   G ++ E
Sbjct: 693 EAKKLLGEPQYHHDWEQGQQLELDMVTLRQPTPQTPT-PLLTKREHELLTLIAQGKSNSE 751

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA +L LS  TVN +L +   KL    R  A   A   G +
Sbjct: 752 IALELVLSPFTVNNHLRAIYRKLGVSTRSAAAYIARERGLL 792


>gi|294791176|ref|ZP_06756333.1| two-component system response regulator [Scardovia inopinata F0304]
 gi|294457647|gb|EFG26001.1| two-component system response regulator [Scardovia inopinata F0304]
          Length = 258

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   +QL   GYT +E+A +L +SV TV  ++     KL   NR +    A   
Sbjct: 196 DVLTSREREVMQLIARGYTYKEVASELFISVKTVETHVSRVLRKLQLSNRGELALWAAHQ 255

Query: 232 GYI 234
             +
Sbjct: 256 RIV 258


>gi|294811923|ref|ZP_06770566.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324522|gb|EFG06165.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 234

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            LM  ++ ++                       AR LTERE   L+L   G T+ EIAE+
Sbjct: 135 RLMARSDSLLFPAAVRSLAAEHGARRTAPVPPWARKLTEREADTLRLMAAGLTNGEIAER 194

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G+   TV +++ +   K  A +R QA+  A   G+I
Sbjct: 195 MGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 231


>gi|264678688|ref|YP_003278595.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262209201|gb|ACY33299.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 223

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L+L   GY+S EI+ +L +S  TV+ ++ +   KL A  R  A+  A   
Sbjct: 161 EKLSEREIEILKLIACGYSSPEISTQLKISTMTVSTHVKNMYRKLQAKTRAHAVKAASLR 220

Query: 232 GYI 234
           G I
Sbjct: 221 GLI 223


>gi|258620181|ref|ZP_05715220.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
 gi|258587539|gb|EEW12249.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
          Length = 216

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213

Query: 233 YI 234
            +
Sbjct: 214 LL 215


>gi|167031823|ref|YP_001667054.1| ATP-dependent transcription regulator LuxR [Pseudomonas putida
           GB-1]
 gi|166858311|gb|ABY96718.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudomonas putida GB-1]
          Length = 905

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             A     +++     +    +     L+ RE + L+L   G ++++I+E+L +S+HTV 
Sbjct: 817 AAACPVQAELLKHLPPVPTASTGTGEALSGRELAVLELIAQGCSNQQISERLFISLHTVK 876

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +      KL    R QA+AKA   G +
Sbjct: 877 THASHINSKLGVERRTQAVAKAKTLGLL 904


>gi|113955465|ref|YP_731403.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882816|gb|ABI47774.1| possible DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 243

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
               L +   S    LT +E   L+    G +++EIA+ L +S+ TV +++ S   KL A
Sbjct: 155 RHGRLGRALGSIPPELTLKEEDVLRGLCRGMSNQEIADSLVVSIDTVKSHIASLLRKLQA 214

Query: 219 VNRIQAIAKAIRFGYI 234
            NR  A+  A + G I
Sbjct: 215 NNRTHAVVVAFQQGLI 230


>gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator
           [Ralstonia solanacearum PSI07]
 gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator
           [Ralstonia solanacearum PSI07]
          Length = 201

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 38/75 (50%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                 +  + A  L+ERE   L  +  G TS EIA  LGLS  TV+ ++ +A  KL   
Sbjct: 125 ARNARPRSPAPAVPLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVA 184

Query: 220 NRIQAIAKAIRFGYI 234
            RI+A+ KA   G I
Sbjct: 185 TRIEAVVKASSAGII 199


>gi|298242112|ref|ZP_06965919.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555166|gb|EFH89030.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 273

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 8/127 (6%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +   VR            S   + +            ++++ F  L  + 
Sbjct: 152 AAMRAGARGYLLKGVRHEDMVRAIRAVGSGDAIFSP-------AIATRLVSYFSALQPEH 204

Query: 168 SSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     L+ RE   L L   G  + EIAE+L +S  TV  Y+ +   KL   +R QAI 
Sbjct: 205 PSQIFPELSHRERDILALLAQGCKNAEIAERLVVSPKTVRNYVSNIISKLQVADRAQAIL 264

Query: 227 KAIRFGY 233
           +A   G 
Sbjct: 265 RAKDAGL 271


>gi|262402371|ref|ZP_06078932.1| DNA-binding response regulator LuxR family [Vibrio sp. RC586]
 gi|262351153|gb|EEZ00286.1| DNA-binding response regulator LuxR family [Vibrio sp. RC586]
          Length = 212

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 150 PLSRREEAILRMVAQGCSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 209

Query: 233 YI 234
            +
Sbjct: 210 LL 211


>gi|149925601|ref|ZP_01913865.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825718|gb|EDM84926.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 237

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE   L++   G+   EIA+ LG+S++T++ Y+     KL   +R  A+ +A   G
Sbjct: 171 PLSEREQQVLEMVAKGFMQAEIADILGVSINTISTYIKRIYKKLAVNSRTSAVHRANALG 230

Query: 233 YI 234
            I
Sbjct: 231 LI 232


>gi|146280178|ref|YP_001170335.1| hypothetical protein Rsph17025_4179 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558419|gb|ABP73030.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 232

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 157 ITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +  F+ L  +R S+    LT +E   L     G  ++EIA+ +GLS  TV  ++ S   K
Sbjct: 128 LPAFMRLTPRRHSSDERGLTPKELEVLGGLTIGLMNKEIAQNMGLSEVTVKMHVRSICAK 187

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L+  NR QA   A +FGY
Sbjct: 188 LNVKNRTQAAMVAAQFGY 205


>gi|296138093|ref|YP_003645336.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026227|gb|ADG76997.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 222

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 31/227 (13%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   ++AR F +     ++    R     +     +D   +P+       
Sbjct: 19  VDDHPMWRDAVARDLEARGFTVAGTADSVAAAGRIAGAVQPTVVLMDM-SLPDGDGAAGT 77

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              L H     + I+  S + E V+E+                             GY++
Sbjct: 78  TLVLQHAPQAAVLILSASDEREDVVEAV-----------------------KAGACGYLV 114

Query: 134 FTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
            ++    L   V   A        G    V+ +F  +  +   A   LT RET  L+L  
Sbjct: 115 KSASAEELVAAVRATAAHQPVFTPGLAGLVLGEFRRMAAEPEPAGPQLTPRETEVLRLVA 174

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            G ++++IA +L LS  TV  ++ +   KL   NR++    A+  G 
Sbjct: 175 KGLSAKQIATRLHLSHRTVENHVQATLRKLQLGNRVELARYALENGL 221


>gi|302546067|ref|ZP_07298409.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463685|gb|EFL26778.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S    LT RE   L     G+ ++EIA +L +S  TV  ++  A  KL A +R Q +  
Sbjct: 155 ASRLDALTGREREVLVQVAGGHPNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 214

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 215 AYETGLV 221


>gi|134097815|ref|YP_001103476.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005549|ref|ZP_06563522.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910438|emb|CAM00551.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 43/97 (44%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            +      ++        V     E  ++ S+  R+LTERE   L   G+G ++ +IAE+
Sbjct: 119 RVAADGHTVLSLEATRRLVAASADEHGQRASALVRDLTEREREVLACLGEGLSNAQIAER 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  ++     KL   NR QA   A   G +
Sbjct: 179 LFLSEATVKGHVSRTMTKLRCTNRTQAGLLAYDAGLV 215


>gi|186470703|ref|YP_001862021.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197012|gb|ACC74975.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 219

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 15/135 (11%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVIT-------- 158
           +    +    +   V          +       L  ++  E       + +         
Sbjct: 72  MRQHGVDARFLMLTVSDNERDVVAALRAGASGYLLKDMEPEELCLNLQKALQGTAVLSEA 131

Query: 159 ------DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                   L   +   +   NL+ RE   L    +G  ++EIA KL +SV TV  ++   
Sbjct: 132 VTGKLFHALSAGQPLPANQSNLSVREQEVLDYLVEGMCNKEIARKLDISVGTVKVHVKHL 191

Query: 213 TVKLDAVNRIQAIAK 227
             KLD  +R++A+  
Sbjct: 192 LHKLDLHSRVEAVVW 206


>gi|284989608|ref|YP_003408162.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284062853|gb|ADB73791.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 212

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    LA+ V   A G           L  + R+ AA   T RE   L  
Sbjct: 97  AGATGYLLKDAPLPQLADAVRAAARGETVLAPPVAARLVSRLRAPAAEAPTARELEVLAG 156

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T+ EI  +L +   TV  +L     KL   +R +A+  A+  G +
Sbjct: 157 VARGLTNAEIGRELFIGEATVKTHLLRVFAKLGVDDRTRAVMVAVERGLL 206


>gi|295701248|ref|YP_003610249.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441571|gb|ADG20738.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 210

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 13/165 (7%)

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142
               +    +       S   L  R+         +   +          +       L 
Sbjct: 44  RSRAVDLLLLDMTMPGISGIVLIRRVRAEHPSLPVLVLSIHDEAQVASRALRAGATGYLT 103

Query: 143 NEVIIEAHGACYQVITDFLEL-------------FKKRSSAARNLTERETSCLQLAGDGY 189
            +   E   A  + + +                  +      + L++RE   LQ+   G 
Sbjct: 104 KDSDPEVLLAAIRKLAEGGRFLDPKLVDALVFDTQRDDVPPHKVLSDREFQVLQMLAAGR 163

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  EIAE   LS  T++ +      KL   N  + I  AIR G I
Sbjct: 164 SINEIAETCTLSAKTISTHKMRLMRKLGLSNNAELIRYAIRHGLI 208


>gi|150019634|ref|YP_001311888.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906099|gb|ABR36932.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 218

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LTERE   + +  DG  ++EIA  L ++  TV   +     KL   +R Q    A++ G
Sbjct: 157 SLTERELKIVSMIVDGKDNKEIASSLFIAEGTVKNIITEIISKLSLRDRTQLAVYAVKNG 216

Query: 233 YI 234
            +
Sbjct: 217 LV 218


>gi|302184842|ref|ZP_07261515.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|330954520|gb|EGH54780.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 222

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     ++    LT RE   L L   G+++ EI EKLG
Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNREIGEKLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|289768678|ref|ZP_06528056.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698877|gb|EFD66306.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 220

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R +TERE   L+L  +G+TS+EI E L +S  TV  +  +   KL   +R++    AI
Sbjct: 154 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAI 213

Query: 230 RFGYI 234
           R G I
Sbjct: 214 RAGLI 218


>gi|284030063|ref|YP_003379994.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809356|gb|ADB31195.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++I +      +R+  A   L+ RE   +     G ++EE+A +L LS+ TV  YL 
Sbjct: 132 ITRRLIAEVSRGRTRRTPEAFEQLSPRELELVGAVLRGLSNEELAAELFLSLSTVKTYLS 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               KLD  +R Q +  A   G 
Sbjct: 192 RIFSKLDVRDRTQLVILAYESGL 214


>gi|284990521|ref|YP_003409075.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063766|gb|ADB74704.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 232

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +A   LTERE   + L   G ++E+IA +L LS  TV  ++  A  KL A +R Q +  A
Sbjct: 159 AALDVLTEREREMVALVAHGLSNEDIAARLHLSPLTVKTHVNRAMSKLRARDRAQLVVLA 218

Query: 229 IRFGYI 234
            + G +
Sbjct: 219 YQTGLV 224


>gi|182414741|ref|YP_001819807.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177841955|gb|ACB76207.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 223

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L ++  +    LTERE   L+    G +++EIA  L +S  TV ++L +   KL   +R
Sbjct: 150 RLTER--AQREQLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHLKTLFAKLRVRDR 207

Query: 222 IQAIAKAIRFGYI 234
             A  +AIR G +
Sbjct: 208 TGAAIEAIRHGIV 220


>gi|146281277|ref|YP_001171430.1| two-component response regulator NarL [Pseudomonas stutzeri A1501]
 gi|145569482|gb|ABP78588.1| two-component response regulator NarL [Pseudomonas stutzeri A1501]
 gi|327479436|gb|AEA82746.1| two-component response regulator NarL [Pseudomonas stutzeri DSM
           4166]
          Length = 202

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 17/144 (11%)

Query: 105 SVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEFLMLANEVIIEAHGACY- 154
           + R+    +    I F V               +GY++   +   L  ++ I A G    
Sbjct: 55  TRRMRDADIDARIIMFTVSDEQSHVLEALRNGADGYLLKDMDAEELIEQIRIAATGRMAL 114

Query: 155 -----QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                QV+ + + +  K +   +  +LT+RE   L+    G +++ IA KLG++  TV  
Sbjct: 115 SPELTQVLAEAIRVRPKPTGQVQFSSLTKREKEVLRQIAKGQSNKMIARKLGITEGTVKV 174

Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231
           ++ +   KL   +R++A    +  
Sbjct: 175 HVKNLLHKLGLRSRVEAAVWVLEN 198


>gi|307327290|ref|ZP_07606477.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886969|gb|EFN17968.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 133 IFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +      + + E ++            +++   +           LT RE   + LA +G
Sbjct: 114 LLAGLRTVASGEALLSPAATRTLITNFLMSPAPDAHLAPPERLSELTGREREVMGLAAEG 173

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ EIAE L LS  TV  ++  A  KL A +R Q +  A + G 
Sbjct: 174 RSNTEIAEILTLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218


>gi|290954729|ref|YP_003485911.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644255|emb|CBG67336.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              +  +  ++ + + ++                  +  K +   + LTERET  L L  
Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFARQRPAVRGKPALRLKRLTERETEVLTLVA 172

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EIA+ L L+  TV  ++     KLD  +R QA+  A   G +
Sbjct: 173 RGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|297569017|ref|YP_003690361.1| two component transcriptional regulator, LuxR family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924932|gb|ADH85742.1| two component transcriptional regulator, LuxR family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 207

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 144 EVIIEAHG----ACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           E I E H        ++     +E  +K S     L+ RE   ++    G++ ++IA KL
Sbjct: 112 ESIQELHLGGAPMSPKIARRLIMEFREKGSLQQNLLSTREVEIIREVEKGFSYKDIAAKL 171

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S HTV++++     KL A++R  AI KA + G +
Sbjct: 172 FISPHTVHSHIKKIYEKLHAMDRQDAILKARKCGLL 207


>gi|256786258|ref|ZP_05524689.1| response regulatory protein [Streptomyces lividans TK24]
 gi|289770149|ref|ZP_06529527.1| response regulatory protein [Streptomyces lividans TK24]
 gi|289700348|gb|EFD67777.1| response regulatory protein [Streptomyces lividans TK24]
          Length = 223

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 35/109 (32%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +          LT+RE   L   
Sbjct: 114 AGATGYLLKAERPEELFAAIHAAAQGRTALSGPVAGRVMANLRKPRPALTDRERDILAQL 173

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA  L +S  TV  +L     KL    R  A+A A     +
Sbjct: 174 ATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 222


>gi|254507039|ref|ZP_05119177.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219550034|gb|EED27021.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 212

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G++S+++A  L +S  TV  +  +   KLD  +  +    A+  G
Sbjct: 150 PLSRREEAVLKLVAQGHSSKKVAAMLNISYRTVETHRQNIKHKLDLHSTAELAKYAVERG 209

Query: 233 YI 234
            +
Sbjct: 210 LV 211


>gi|297194468|ref|ZP_06911866.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718721|gb|EDY62629.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 129 NGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               +  +   + A E ++          +V++         +     LT+RE   L L 
Sbjct: 114 RPADLLAAIRTVAAGESLLSPGPTSRLIARVLSAPQVPAANGAGGPDVLTDRERQVLTLV 173

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIAE LGLS  T   ++     KL A +R Q +  A   G +
Sbjct: 174 ARGLNNTEIAESLGLSPLTAKTHVSRIMSKLCARDRAQLVIVAYESGLV 222


>gi|29830013|ref|NP_824647.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607123|dbj|BAC71182.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 125 IRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 184

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 185 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 243


>gi|304439372|ref|ZP_07399284.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372154|gb|EFM25748.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 208

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L   G  ++EIAE LG+S++TV  ++     K    +R Q   +A   G+
Sbjct: 144 LTPREIQVLRLLTTGVGNDEIAESLGISLNTVKTHIQHLLDKTGFTSRTQLAIQARVTGF 203

Query: 234 I 234
           +
Sbjct: 204 V 204


>gi|302531315|ref|ZP_07283657.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440210|gb|EFL12026.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 218

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 151 GACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G    V+ ++  +      +     LT+RET  L+L   G T+ +IAE+L LS  TV  +
Sbjct: 131 GLAGLVLGEYRRMADAPDGAPEPPRLTDRETDVLRLVAKGLTARQIAERLVLSHRTVENH 190

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + S   KL   NR++    AI  G 
Sbjct: 191 VQSTLRKLQLHNRVELARYAIEHGL 215


>gi|254423092|ref|ZP_05036810.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190581|gb|EDX85545.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 212

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V     G  +      ++L ++    +  LT RE   L++ 
Sbjct: 101 AGARGYLLKDATSQELTQAVRQVYQGKRFIPADVAMKLAERIE--SDELTAREIDVLEMM 158

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +++E L +S  TV  ++ +   KL+A +R QA+  A+  G +
Sbjct: 159 VQGSSTAKLSEALHISEGTVKFHVNNILQKLNAHDRTQAVVTALHRGIV 207


>gi|220926479|ref|YP_002501781.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219951086|gb|ACL61478.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 509

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEE 193
           +     V+ +       VI     L +             LT RE   L L   G ++ E
Sbjct: 396 IAAIEAVMQDTSWFSRTVIEKLAHLRRPNRPDKPEAGLSDLTPRELEVLGLMCRGLSNAE 455

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           I +KLG++ +TV  ++     K+D  +R  A+  A   G+
Sbjct: 456 IVKKLGVTHNTVRNHIARIYAKIDVHDRAGAVVWARERGF 495


>gi|56697420|ref|YP_167788.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56679157|gb|AAV95823.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 216

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 1/117 (0%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           I+  +  G          +E +  A + ++             LE  +   +    LT R
Sbjct: 94  ISTALSHGAMGYVLKDVPTEEIKQAIDAVMRGERYLCTGAKGSLEPKEGEEAR-EALTGR 152

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E + L     G +++E+A  L +SV TV  +  +   KL   +       A+  G +
Sbjct: 153 EQTILLQLAQGKSNKEVAIALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 209


>gi|294787163|ref|ZP_06752416.1| two-component system response regulator [Parascardovia denticolens
           F0305]
 gi|315227300|ref|ZP_07869087.1| two component system response regulator [Parascardovia denticolens
           DSM 10105]
 gi|294484519|gb|EFG32154.1| two-component system response regulator [Parascardovia denticolens
           F0305]
 gi|315119750|gb|EFT82883.1| two component system response regulator [Parascardovia denticolens
           DSM 10105]
          Length = 283

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   +QL   GYT +E+A +L +S+ TV  ++     KL   NR +    A   
Sbjct: 221 DVLTSRERQVMQLIARGYTYKEVASELFISIKTVETHVSRVLRKLQLSNRGELALWAAHQ 280

Query: 232 GYI 234
             +
Sbjct: 281 RIV 283


>gi|158335395|ref|YP_001516567.1| hypothetical protein AM1_2240 [Acaryochloris marina MBIC11017]
 gi|158305636|gb|ABW27253.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 469

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE- 137
           H    +L + +  +  +  +      S +          +   + +   K+  +      
Sbjct: 307 HCQQSVLQLAFTHLCLQAGLNLKEMTSAKTAESNCQEVLLTDRLDIPSSKSPIIWIQHSP 366

Query: 138 --FLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTS 191
              +  A + ++       Q+ T   ++ + +++     A  L++RE   ++L   G   
Sbjct: 367 RGQIPAAAQAVVTLDIIPQQLYTVVAQVSQGQAALPELIAPTLSDREQEIMRLLSQGLRD 426

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +IA +L +S  TV  ++ +   KL A NR QA+ +A    +I
Sbjct: 427 RDIANRLHISESTVRFHVNNTLTKLKAKNRYQAVYEATSREWI 469


>gi|170721041|ref|YP_001748729.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759044|gb|ACA72360.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 82

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            +  ++   ++     LT RE   L     G +S EI + L     TVN ++G+   K D
Sbjct: 3   ANTQQIEDSQADTPIRLTPREQQVLLWCAYGKSSWEIGQILQCQESTVNFHVGNILRKFD 62

Query: 218 AVNRIQAIAKAIRFGYI 234
              R+ A+ KAIR+G +
Sbjct: 63  VSTRVAAVIKAIRYGML 79


>gi|282862559|ref|ZP_06271620.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562245|gb|EFB67786.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 225

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177
              +G+V+ +     L                GA   +I ++L  + +     AR +TER
Sbjct: 107 AGASGFVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNYLDRVREGGDVPARAITER 166

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  +G++S+EIA  L +SV TV  +  +   KL   +R++    AIR G I
Sbjct: 167 EEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 223


>gi|256378098|ref|YP_003101758.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922401|gb|ACU37912.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 225

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 139 LMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNL---TERETSCLQLAGDGYTSEEI 194
            ++A    + A     +++  F   L    + A   L   TERE   L L   G ++ E+
Sbjct: 122 RVIAAGDAVVAPRVTRRLLDRFAGRLDTAPAPADDRLDVLTEREREVLVLVARGLSNVEL 181

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE++ ++  TV  +LG    KL   +R+QA+  A   G +
Sbjct: 182 AERMHVAEATVKTHLGRVLTKLGLRDRVQAVVLAYELGLV 221


>gi|257067005|ref|YP_003153261.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
 gi|256798885|gb|ACV29540.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
          Length = 198

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+    G   ++IA+KL +S  T+  ++ +   KL A N ++A  KA+  
Sbjct: 132 DPLTNRELEVLEELIKGSRKKDIAQKLYISERTLYNHIANIYEKLGAKNIVEAYNKAMEL 191

Query: 232 GYI 234
           GYI
Sbjct: 192 GYI 194


>gi|268593225|ref|ZP_06127446.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131]
 gi|291311274|gb|EFE51727.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131]
          Length = 208

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 13/160 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           I    +      E+  QL  RL      F  I   +             G   + ++   
Sbjct: 48  IDVAIMDISMPDENGLQLLSRLRQKKPDFRTIILSIYDTPAFVQSALDAGASAYLTKRCG 107

Query: 141 LA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                     V       C   +   L    ++  + + LT RE     L   G + + I
Sbjct: 108 PEELVQAVRSVHQGGCYLCADAM-RALRHSPQQQQSLQELTPREREVFDLLVAGLSVKVI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+L LS  TV+ +  +   KL   N I  +  A+    I
Sbjct: 167 AEQLELSHKTVHVHRANILGKLQCENTIDLVHYALEHNLI 206


>gi|254426902|ref|ZP_05040609.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
 gi|196193071|gb|EDX88030.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
          Length = 216

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 39/87 (44%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +          +       K  S +  +LT+RE   L++   G  + EIA  L LS HT
Sbjct: 129 ELWFPRAVLQTYLMKSRTFNKTFSRSEVSLTDREVEVLKVMATGAKNSEIASSLNLSPHT 188

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +  ++ +   K++A NR+QA+  A   
Sbjct: 189 IKTHIYNIFKKINASNRLQAVNWAQEN 215


>gi|83644295|ref|YP_432730.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
 gi|83632338|gb|ABC28305.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
          Length = 902

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S     L++RET+ L     G ++EEIA  L ++  TV  +L +   K     R QA+A 
Sbjct: 836 SPLMEELSQRETTILNHLSAGRSNEEIAVALNIAASTVKTHLRNIYAKFGVRRRTQALAI 895

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 896 AREKGLV 902


>gi|117928597|ref|YP_873148.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649060|gb|ABK53162.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 225

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 13/166 (7%)

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG--------FHKNGYVI 133
             + P     +       S   L   L     P   +                   GY++
Sbjct: 59  RSVGPCDVCIVDVGLPDGSGLDLIAELRAAGWPRLVVLSAADDPYSVRAAFVAGAQGYLL 118

Query: 134 FTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDG 188
            ++  +++ + V     G       +   L    + +++      L+ RE   L+L  DG
Sbjct: 119 KSASPVVVTDGVRRVLDGGVYADPAVASLLAAGLRNNASNEGIGDLSSREIEVLRLVADG 178

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +++EI ++LGLS  TV ++L     KL   +R + +A A+R G I
Sbjct: 179 RSNKEIGDQLGLSALTVKSHLARIARKLGTGDRAEMVALAMRAGII 224


>gi|295400759|ref|ZP_06810736.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977340|gb|EFG52941.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 185

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + S+    LT  E   LQ   +  T+ EI+E L +S  TV  ++ S   KLD  +R+ 
Sbjct: 114 ADRLSNYHPPLTNVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVG 173

Query: 224 AIAKAIRFGYI 234
           A+ KA++ G +
Sbjct: 174 AVVKAMKLGIL 184


>gi|294628934|ref|ZP_06707494.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292832267|gb|EFF90616.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 226

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              RS     LT RE   L     G++++EIAE+L +S  TV  ++  A  KL A +R Q
Sbjct: 151 DPARSGRLEALTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQ 210

Query: 224 AIAKAIRFGYI 234
            +  A   G +
Sbjct: 211 LVVIAYESGLV 221


>gi|89899800|ref|YP_522271.1| ATP-dependent transcription regulator LuxR [Rhodoferax
           ferrireducens T118]
 gi|89344537|gb|ABD68740.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Rhodoferax ferrireducens T118]
          Length = 930

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 6/154 (3%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
            +G +P     I               +     P  G         H +G +        
Sbjct: 782 RTGDMPAAVTEIGTALQFACQEGFMRLILDE-GPAVGALVQRYQSLHDSGQM-----RDP 835

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L  + +     A   + T+     +        LT +E   LQL  +GY++  +AEKL +
Sbjct: 836 LLGDYLQRLLQAFGPLPTEIEATPELLGGVLEPLTRKEIRVLQLLVEGYSNSAMAEKLFV 895

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV  +L +  +K  A +R QA+A A R G I
Sbjct: 896 SDSTVRTHLRNINMKFGAHSRTQAVAIARRLGLI 929


>gi|21222669|ref|NP_628448.1| response regulatory protein [Streptomyces coelicolor A3(2)]
 gi|8248775|emb|CAB93036.1| putative respose regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 223

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 35/109 (32%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +          LT+RE   L   
Sbjct: 114 AGATGYLLKAERPEELFAAIHAAAQGRTALSGPVAGRVMANLRKPRPALTDRERDILAQL 173

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA  L +S  TV  +L     KL    R  A+A A     +
Sbjct: 174 ATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 222


>gi|21222167|ref|NP_627946.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256786745|ref|ZP_05525176.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289770639|ref|ZP_06530017.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|10432460|emb|CAC10294.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289700838|gb|EFD68267.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              +  +  ++ + + ++                     K +   + LTERET  L L  
Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFAQQRPASRGKPALRLKGLTERETEVLTLVA 172

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EIA  L L+  TV  ++     KLD  +R QA+  A   G +
Sbjct: 173 RGQSNTEIARTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|254254914|ref|ZP_04948231.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158]
 gi|124899559|gb|EAY71402.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158]
          Length = 510

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 23/170 (13%)

Query: 88  IWQSIQEETVIESS-------GQLSVRLEGGLLPFAGIAFP-----VRLGFHKNGYVIFT 135
           +W        I+             VR+                  +         ++  
Sbjct: 322 LWAERDARQRIDEQLARDGSVRSADVRIRTLDGDVRDCVVSAEPVAIHGQDCLLIALLDI 381

Query: 136 SEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQL 184
           S+      E+       + +A      +I       +  +  A      LT RE     L
Sbjct: 382 SDRKRTEMELVYAIETAMQDASWFSRTLIEKLANARRANAPDAGAQLSDLTARERDVFDL 441

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G   +EIA +LGL+ +TV  ++ +   KLD  +R +AI  A   G +
Sbjct: 442 LCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|300788854|ref|YP_003769145.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798368|gb|ADJ48743.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 210

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 10/153 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AH 150
           +        + ++   L         + F            + +     L  +       
Sbjct: 58  LDLRLPDMLAPEVVTELRRVHPEGKIVVFTAHGDHQGVLAALESGAHGCLLKDAAGAQLV 117

Query: 151 GACYQVITDFLELFKKRSSAA---------RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
               +V+     +  +    A           LT RE   L+LA  G T+ EIAE  GL+
Sbjct: 118 TELRRVLRGERVVDPRILPDAGQRSDALARSGLTRREYEVLRLAAQGQTNPEIAESTGLA 177

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +TV  YL SA  KL A NR++AI KA   G +
Sbjct: 178 RNTVKTYLQSALHKLGARNRVEAIGKASEAGLL 210


>gi|290962896|ref|YP_003494078.1| two-component regulator [Streptomyces scabiei 87.22]
 gi|260652422|emb|CBG75555.1| putative two-component regulator [Streptomyces scabiei 87.22]
          Length = 222

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 4/135 (2%)

Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
             +         AG + F ++    +    G     +   ++A  +      A    +  
Sbjct: 84  FDLDEYAYDGLRAGASGFLLKDARPEELVAGIHAVATGDAVVAPSLTRRLLDAYAHQVLA 143

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                        +L+ERE   L   G G+T+ EIAE+L L+  TV  ++G    K+ A 
Sbjct: 144 PSGTAPAADPRLESLSEREHEVLVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGAR 203

Query: 220 NRIQAIAKAIRFGYI 234
           +RIQA+  A   G +
Sbjct: 204 DRIQAVITAYDAGLV 218


>gi|290960962|ref|YP_003492144.1| response regulator [Streptomyces scabiei 87.22]
 gi|260650488|emb|CBG73604.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 225

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           L  G   F G      L       V      L  A    +             L   ++ 
Sbjct: 97  LRSGASGFLGKDVTADLLLDGIRTVAAGDTLLSPAATRTLITRFLAAPAPGSRLTTPERL 156

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   + LA +G +++EIAEKL +S  TV  ++  A  KL A +R Q +  
Sbjct: 157 T----TLTSREREVMSLAAEGSSNDEIAEKLYVSPLTVRTHVHRAMTKLGARDRAQLVVM 212

Query: 228 AIRFGYI 234
           A + G +
Sbjct: 213 AYQSGLV 219


>gi|289825364|ref|ZP_06544608.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 146

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                               I   +R G      +      +  ++E  + A      + 
Sbjct: 6   CARHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR-DIPFSSEERLRAQAVQPLLG 64

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +  ++ +  A  LT +E   + +  +G +++ IA +L +S+ TV  +L +   K +
Sbjct: 65  LAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTE 124

Query: 218 AVNRIQAIAK 227
            +NR + +++
Sbjct: 125 VINRTELVSR 134


>gi|270307800|ref|YP_003329858.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270153692|gb|ACZ61530.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 232

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   LQLA  G ++ EIA+KL LS+ TV A+L +   K+    R +AI K  R G
Sbjct: 154 QLSPREVEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213

Query: 233 YI 234
           Y+
Sbjct: 214 YV 215


>gi|126737738|ref|ZP_01753468.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. SK209-2-6]
 gi|126721131|gb|EBA17835.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. SK209-2-6]
          Length = 251

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 72/229 (31%), Gaps = 12/229 (5%)

Query: 11  SSSLQEL-SPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + SL+EL    +  +            YT                L N++ D  +     
Sbjct: 13  AQSLEELWHNHVQQMSE-YGFDRLMYGYTRYKTETSLGDPDDFLILTNHNQDYVNGFLNN 71

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETV---IESSGQLSVRLEGGLLPFAGIAFPVRLG 125
              +    L           WQ IQ+      ++S  +  V         AG        
Sbjct: 72  GLYFHAPMLRWALENEGAGSWQKIQQMAEQNMLDSKARRVVEFNQSQGMSAGYTVSFFSA 131

Query: 126 FHKNGYVIFTSEFLMLANEVI---IEAHGACYQVITDFLELFKKRSS---AARNLTERET 179
             +    I       +    +       G    ++ + + L           R LT+R+ 
Sbjct: 132 SKRYKGAISLGAKKGIDQREVDSAWREQGDDIVLMNNVVHLKILTLPYETPNRTLTKRQK 191

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             LQ  GDG T+++IA  +GL+  TV  +L  A   L      QA+ KA
Sbjct: 192 EALQWVGDGKTTQDIALLMGLTAATVEKHLRLARESLSVETTAQAVLKA 240


>gi|328883448|emb|CCA56687.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 220

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                  +    LTERET  L L   G ++ EIA+ L ++  T+  ++    VKL   +R
Sbjct: 144 SPRPPAMAQIGELTERETEVLVLIAQGLSNAEIADHLVVAESTIKTHVSRILVKLALRDR 203

Query: 222 IQAIAKAIRFGYI 234
            QA   A   G +
Sbjct: 204 TQAAVFAYEAGLV 216


>gi|307332571|ref|ZP_07611620.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306881779|gb|EFN12916.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 231

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L L   G ++ EIAE+L ++  TV  ++    VKL   +R QA   A    
Sbjct: 166 ELTERENEVLVLVAQGCSNAEIAERLIVAESTVKTHVSRILVKLGLRDRTQAAVFAYEAR 225

Query: 233 YI 234
            +
Sbjct: 226 LV 227


>gi|224825157|ref|ZP_03698263.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224602828|gb|EEG09005.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 215

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GYV+  +    +   +     G  Y        L +  +     LTERE   L L
Sbjct: 105 RAGARGYVLKDAPSQEIIAAIEAAVAGGSYYSHAVTHALIE-PAPQPDPLTEREREVLLL 163

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G++++ +A  L +SV TV A+  +   KL A N    +  A+  G+I
Sbjct: 164 LAAGHSNKMVAASLEISVRTVEAHRLNLRRKLGAENVAALVKYAMERGWI 213


>gi|196040971|ref|ZP_03108268.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196028139|gb|EDX66749.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 71

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 10  PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 69

Query: 233 YI 234
           +I
Sbjct: 70  WI 71


>gi|220926584|ref|YP_002501886.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219951191|gb|ACL61583.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 270

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            + D   L         +L+ERE   L +   G +++ IA +L ++  TV  ++ S   K
Sbjct: 166 AVPDGKRLADNLQINMPHLSERERLILTMLASGSSNKVIARRLDVTEATVKVHVKSILRK 225

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           +   NR QA   A + G +
Sbjct: 226 IRVSNRTQAAIWATKNGIV 244


>gi|86355727|ref|YP_467619.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86279829|gb|ABC88892.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 260

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
               + L+L +   SA   LT RE   L L   G  ++ IA+KL LS +TV  ++ +   
Sbjct: 173 AARNNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYK 229

Query: 215 KLDAVNRIQAIAK 227
           K++  NR +A ++
Sbjct: 230 KMNVRNRTEAASR 242


>gi|21224130|ref|NP_629909.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|256784790|ref|ZP_05523221.1| two-component regulator [Streptomyces lividans TK24]
 gi|2995293|emb|CAA18322.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 219

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R +TERE   L+L  +G+TS+EI E L +S  TV  +  +   KL   +R++    AI
Sbjct: 153 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAI 212

Query: 230 RFGYI 234
           R G I
Sbjct: 213 RAGLI 217


>gi|320107298|ref|YP_004182888.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319925819|gb|ADV82894.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 204

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           + I   H    +V  +   +  + +     L+ RE   L+    G++++ IA  L LS H
Sbjct: 113 DTIRSVHAGIRRVPAEIAAMMAEHAG-DEALSPREVEVLRHVSAGHSNKVIASDLDLSEH 171

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+  +L +   KL A +R  A+  A+  G++
Sbjct: 172 TIKGHLKNILSKLGANDRTHAVMIALNRGFL 202


>gi|302337778|ref|YP_003802984.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634963|gb|ADK80390.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM
           11293]
          Length = 264

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +I+        ++ +     +K      +    L+ RET    L   G T+ EI + L
Sbjct: 172 FRIILLLCAVFASLMLNGPRYRQKEGTEEFAKDYALSPRETEITALLLQGKTNAEICQSL 231

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            +S+ TV  ++ S   K  A NR +  A   R G
Sbjct: 232 FISLATVKTHIASIFRKTGARNRTELSAL-FRNG 264


>gi|238061662|ref|ZP_04606371.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883473|gb|EEP72301.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 223

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 4/103 (3%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGY 189
           +  +  L+ + + ++ A     +++  F        +  R    LT RE   L+L  +G 
Sbjct: 114 LVAAVRLVRSGDALL-APAITRRLVERFARRDTDTPAIHRDLSALTARELEVLRLLAEGL 172

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ E+AE+L LS  TV +++     KL   +R+QA+  A R G
Sbjct: 173 SNAELAERLHLSEATVKSHVARILAKLGLRDRVQAVVVAYRTG 215


>gi|218295514|ref|ZP_03496327.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218244146|gb|EED10672.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 192

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +   ++  ++ +     +LT RE   L L   G + +E+A+ LGLS  TV  +L +   K
Sbjct: 113 LLRVMQGEERLTPPDLPSLTPREGEVLALLAQGLSVKEMAKALGLSPDTVKDHLENLYAK 172

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L+A NR++A+ KA   G++
Sbjct: 173 LEARNRVEALEKARSLGFL 191


>gi|118470646|ref|YP_887553.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171933|gb|ABK72829.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 219

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 14/220 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    F +      +    R+  +       +D   + +       
Sbjct: 12  VDDHPIWRDAVARDLADDGFDVVATADGVASASRRAAVVRPDVVLMDM-RLGDGSGAQAT 70

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
            + L       + ++  S + + V+++               AG    +     +     
Sbjct: 71  AEVLAVSPRSRVLVLSASDERDDVLQA-------------VKAGATGYLVKSASRTELAD 117

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                            G          +   +   A   LTERET  L+    G T+++
Sbjct: 118 AVRATAEGRAVFTPGLAGLVLGEYRRIAQQPAQEGPATPTLTERETEILRYVAKGLTAKQ 177

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IA +L LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 178 IAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|322434206|ref|YP_004216418.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161933|gb|ADW67638.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 208

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            + LT RE S L+    G  +++IA  L +S  TV  ++ +   KL   +R QA   A++
Sbjct: 142 GQQLTARELSVLERIVAGRANKDIAADLFISEATVKTHVNNLLSKLGVADRTQAATIALQ 201

Query: 231 FGYI 234
            G++
Sbjct: 202 RGFV 205


>gi|256380225|ref|YP_003103885.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924528|gb|ACU40039.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                     R  A   LT RET  L +   G ++ E+A  L ++  TV  ++     KL
Sbjct: 135 FVRARPARAVRPPALTALTGRETEVLLMVARGLSNAEVARGLNVAEQTVKTHVSRVLTKL 194

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+  A   G +
Sbjct: 195 GLRDRAQAVIAAYESGLV 212


>gi|253575534|ref|ZP_04852871.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845181|gb|EES73192.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 200

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +++ + EA         +   EL          LT RE   L+LA  G T+ EIA  L
Sbjct: 105 DESSDRLAEAIRRVKAGHREASPELVFGSLRRDNPLTAREQEILRLAAKGCTASEIAASL 164

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  TV  Y+     KL+  +RI+A+  A   G+I
Sbjct: 165 HLSYGTVRNYISEILNKLEVKSRIEAVRLAEENGWI 200


>gi|227111773|ref|ZP_03825429.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 210

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
              L    +    I   V         ++            A E +++A           
Sbjct: 71  LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDAIRNDDAFSEQV 130

Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            E+ + R       S    LTERE   LQ    G ++++IA  L +S  TV  ++ +   
Sbjct: 131 REVLRHRIAIQDTPSPFTVLTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLR 190

Query: 215 KLDAVNRIQAIAK 227
           KL+  +R+ A   
Sbjct: 191 KLNVRSRVAATVL 203


>gi|254389093|ref|ZP_05004323.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702810|gb|EDY48622.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 207

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              +  +  ++ A E ++                    K      + LT RET  L+L  
Sbjct: 95  PADLIAAVRVVAAGEALLAPSVTRRLIADFAARHPAPRKGTGHRPKELTPRETEVLELIA 154

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EIAE+L ++  TV  ++G    KL   +R QA+  A   G +
Sbjct: 155 QGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESGLV 202


>gi|196232090|ref|ZP_03130945.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223812|gb|EDY18327.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +  G           + ++ A   + +      Q +   L   +KR+     LT RE   
Sbjct: 99  LSAGARSYVMKNMPRQEMLRAIRAVHDGQEYLPQEVQTALLQHEKRAP----LTPRELEV 154

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++L   G +++EI   LG++  T   ++     K+  ++R QA+ +A+R G I
Sbjct: 155 IRLLARGCSNKEIGMALGIAEITAKIHVSHLLSKMGVLDRSQAVMEALRHGII 207


>gi|104780134|ref|YP_606632.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109121|emb|CAK13818.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 905

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 41/81 (50%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +++    E       A   L+ RE + L+L   G ++++I+E+L +S+HTV  +     
Sbjct: 824 AELLARLPEAPANDLGATEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHIN 883

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL    R QA+A+A   G +
Sbjct: 884 GKLGVERRTQAVARAKSLGLL 904


>gi|84498640|ref|ZP_00997397.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
 gi|84381037|gb|EAP96923.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
          Length = 215

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 35/103 (33%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +  +   +     ++ A                   +    LT RE   L  A  G ++
Sbjct: 113 FLLAAIRAVADGTQVVAAGATRAVFERFRERATATPGADYERLTPREREILLRAAQGLSN 172

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA    LS  TV  ++     KL   +R+Q +  A   G +
Sbjct: 173 AEIAAAEFLSEATVKTHVSRILGKLALRDRVQLVVYAYEHGLL 215


>gi|330962290|gb|EGH62550.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 222

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 42/95 (44%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     +SA   LT RE   L L   G+++ EI EKLG
Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGASAPEALTPRERQVLGLVAGGFSNREIGEKLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|238059115|ref|ZP_04603824.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237880926|gb|EEP69754.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 220

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 37/97 (38%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              ++ A + ++        +           +    +LT RE   + L   G ++EEIA
Sbjct: 116 GVRVVAAGDALLAPSVTRRLISEVAARRTPPPAPDLASLTNREVEIMDLVAQGLSNEEIA 175

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            +L +S  T   ++     KL   +R Q +  A   G
Sbjct: 176 GRLEISHATTKTHVSRILTKLGLRDRAQLVVWAYESG 212


>gi|229020573|ref|ZP_04177315.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026791|ref|ZP_04183123.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228734514|gb|EEL85176.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228740737|gb|EEL90993.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 189

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KL+A NR
Sbjct: 117 ELMFGLWQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNR 176

Query: 222 IQAIAKAIRFGYI 234
           I+AI  A   G+I
Sbjct: 177 IEAITIAEEKGWI 189


>gi|297201836|ref|ZP_06919233.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717312|gb|EDY61346.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 241

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 123 IRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 182

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 183 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 241


>gi|126347864|emb|CAJ89584.1| putative two component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 224

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + +   + LTERET  L L   G ++ EIA+ L L+  TV  ++     KLD  +R QA+
Sbjct: 152 RPALRLKGLTERETEVLTLVARGQSNTEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAV 211

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 212 VFAYESGLV 220


>gi|319653107|ref|ZP_08007209.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2]
 gi|317395028|gb|EFV75764.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2]
          Length = 199

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          LT+RE   L+L  DG  + EIA++L +   TV  Y+ +   KL+  NR
Sbjct: 126 ELMDDVYGEENPLTDREKEVLELIADGKNTREIADQLSIKTGTVRNYISAILDKLEVTNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITQSKEKGW 197


>gi|313201365|ref|YP_004040023.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|312440681|gb|ADQ84787.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 213

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                     ++     ++    L++RE         G T+ +IAE L LS  TV  +L 
Sbjct: 128 LEATVAQQMAIQQLSGEANPVDVLSDREFEVFIALAKGKTTNDIAETLSLSPRTVGTHLY 187

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL+A N  +    A+R G I
Sbjct: 188 NIKQKLNANNSAEIALIAMRSGLI 211


>gi|229542357|ref|ZP_04431417.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229326777|gb|EEN92452.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 200

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          LTERE   L+LA  G T++ I E+L LS  TV  Y+     KL A NR
Sbjct: 128 ELMFDAIREENPLTEREQQILRLAALGKTTKAITEELYLSSGTVRNYISDIIHKLGANNR 187

Query: 222 IQAIAKAIRFGYI 234
            +A + A   G+I
Sbjct: 188 TEAASIAEEKGWI 200


>gi|117927574|ref|YP_872125.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648037|gb|ABK52139.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 199

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 34/88 (38%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             AH      +                LTERE   L     G ++ EI  +L LS  T+ 
Sbjct: 111 ALAHVVVDTRMRKMANGDPPPPLIDVPLTERERQVLDGMSRGMSNYEIGRELFLSEDTIK 170

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +      KL A +R QA+A  IR G +
Sbjct: 171 THARRLFRKLGATDRAQAVALGIRAGLV 198


>gi|302559481|ref|ZP_07311823.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302477099|gb|EFL40192.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 221

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 38/78 (48%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +++   L     +A  +LTERET  L L   G ++ EIA +L ++  T+  ++    VKL
Sbjct: 141 LSEAPRLMPAAHAAYGDLTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKL 200

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA   A     +
Sbjct: 201 GLRDRTQAAVFAYEARLV 218


>gi|302545491|ref|ZP_07297833.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463109|gb|EFL26202.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 237

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 154 YQVITDFLELFKKRSS------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            ++I   L L            A   L+ERE   L L   G  + E A+ LGLS  T   
Sbjct: 146 ARLIARVLRLPATPPPGTPSPAALSALSERERQVLALVARGLNNTEAAQALGLSPLTTKT 205

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++     KL A +R Q +  A   G I
Sbjct: 206 HVSRIMGKLGARDRAQLVITAYESGLI 232


>gi|206563825|ref|YP_002234588.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198039865|emb|CAR55840.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 244

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 59/232 (25%), Gaps = 26/232 (11%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETYG 73
            +    L    +   A  FA  +        +  +    EL                   
Sbjct: 13  ADWPRALRACVDAFDA--FASPSAIVFYRLDQSGEPADFELFGMPESMHRTYVA-RYRML 69

Query: 74  DDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
           D        +G   ++     + +E     +     R          +   +R      G
Sbjct: 70  DPLHPSRCAAGDRAVVTLASQLPDERR--DASAYWTRFLRRHDVADVVEIWLRDAGRTVG 127

Query: 131 YVIF---------------TSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARN 173
                                 F     + +          ++  L   +   R      
Sbjct: 128 AFSLLRFGMGDANRTGNGTAGRFAPGEIDALARLQPVAEAALSPLLRARRGIHRIGCEER 187

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           LT RE    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 188 LTYREEQIARLVRDGCSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239


>gi|115358981|ref|YP_776119.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284269|gb|ABI89785.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 71/245 (28%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  + +      L                
Sbjct: 60  TLANAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PNTYRGDYV 117

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116
                  D          +PI+W           +++    +   L   ++        +
Sbjct: 118 RHNHHDIDPRTLDARVCNMPIVWDLQQLRREHRERDDGPCVTPAALDGFLQTMQDDGMCS 177

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 236

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296

Query: 230 RFGYI 234
           +   I
Sbjct: 297 KLELI 301


>gi|294812452|ref|ZP_06771095.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441089|ref|ZP_08215823.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325051|gb|EFG06694.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 236

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              +  +  ++ A E ++                    K      + LT RET  L+L  
Sbjct: 124 PADLIAAVRVVAAGEALLAPSVTRRLIADFAARHPAPRKGTGHRPKELTPRETEVLELIA 183

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EIAE+L ++  TV  ++G    KL   +R QA+  A   G +
Sbjct: 184 QGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESGLV 231


>gi|288802576|ref|ZP_06408015.1| transcriptional regulator [Prevotella melaninogenica D18]
 gi|288335104|gb|EFC73540.1| transcriptional regulator [Prevotella melaninogenica D18]
          Length = 214

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 36/89 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +      C       L            LT+ ET  L+    G T+ EIA+K   S HTV
Sbjct: 119 LQGQRFLCQHATNMILAPTALVDKEIVALTKTETEILKEIALGATTREIADKRFSSFHTV 178

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           N +  +   KL   N  +AI  A+R G +
Sbjct: 179 NTHRKNIFRKLGVNNVHEAIRYAMRSGLV 207


>gi|295680795|ref|YP_003609369.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440690|gb|ADG19858.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 210

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 45/156 (28%), Gaps = 13/156 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       S   L  R+         +   +          +       +  +   +   
Sbjct: 53  LDMTMPGISGVDLIRRVRSDRPGLPLLVLSIHNEAQVASRALRAGATGYVTKDSDPDVLL 112

Query: 152 ACYQVITDFLEL-------------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           A  + + D                           LT+RE   LQL   G +  +IAE  
Sbjct: 113 AAIRKLADGGRFIDPKLVDAMVFEKHAGDVPPHEVLTDREFQVLQLIASGQSINDIAEAC 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  T++ +      KL   N  + I  AIR G I
Sbjct: 173 SLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGLI 208


>gi|257069626|ref|YP_003155881.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256560444|gb|ACU86291.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 222

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 33/70 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + R      LT+RET  L   G G ++ +I  +L +S  TV A++     KLD  NR+Q
Sbjct: 145 RQDRHPGLEQLTDRETEVLGAVGAGLSNAQIGMRLFMSEATVKAHVSKIFAKLDCTNRVQ 204

Query: 224 AIAKAIRFGY 233
               A   G 
Sbjct: 205 IAIIAHEAGL 214


>gi|169795883|ref|YP_001713676.1| LuxR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157421|ref|YP_002319466.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           AB0057]
 gi|215483371|ref|YP_002325582.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|301347889|ref|ZP_07228630.1| response regulator [Acinetobacter baumannii AB056]
 gi|301510141|ref|ZP_07235378.1| response regulator [Acinetobacter baumannii AB058]
 gi|301595140|ref|ZP_07240148.1| response regulator [Acinetobacter baumannii AB059]
 gi|332856103|ref|ZP_08436132.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6013150]
 gi|332868476|ref|ZP_08438188.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6013113]
 gi|169148810|emb|CAM86679.1| putative transcriptional regulator (LuxR family) [Acinetobacter
           baumannii AYE]
 gi|213056581|gb|ACJ41483.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           AB0057]
 gi|213987495|gb|ACJ57794.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|332727165|gb|EGJ58622.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6013150]
 gi|332733363|gb|EGJ64550.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6013113]
          Length = 239

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 10/211 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              +  I   ++A   A Y  +S  +          +   D  + +     I  + D   
Sbjct: 35  ENIIADIAILLRADFAASYIWDSTHNL----SKDGVIWKIDPKAMEDY-ECIWQFDDPIT 89

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              +    P     +   + ++               + GI           G +     
Sbjct: 90  AQLHKLQKPTFVNEVMPLSDLK-KTGYYNEFLKTYGLYHGINIYFVRNGVDIGDLRIWRA 148

Query: 138 FLMLANEVIIEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
                     +      +   T  L L     S    LT RE   + L   G + +E+A 
Sbjct: 149 QDAEMFGEREKRILTLLEPYFTQALPLD---LSTQYGLTPREQEVVHLVSKGLSDKEVAS 205

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LG+   T+  +L ++  K+   NR +    
Sbjct: 206 LLGIGFTTLRTHLNNSMRKIGGNNRTEMALL 236


>gi|86741939|ref|YP_482339.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86568801|gb|ABD12610.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 213

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D +    +      +L+ RE   LQ   +G T+ +I  ++ LS  TV  Y+ S   KL  
Sbjct: 137 DRMRQGPREDPTLASLSAREREILQHIAEGLTNRQIGTRIHLSEKTVKNYVSSILEKLGM 196

Query: 219 VNRIQAIAKAIR 230
            +R QA   A++
Sbjct: 197 TSRTQAAVYALK 208


>gi|68536744|ref|YP_251449.1| two-component system response regulator TcsR7 [Corynebacterium
           jeikeium K411]
 gi|68264343|emb|CAI37831.1| two-component system response regulator TcsR7 [Corynebacterium
           jeikeium K411]
          Length = 227

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 42/119 (35%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           +G              V    +   + +           ++                 LT
Sbjct: 99  SGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRREPVELDLPDPLT 158

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   LQL   G +++EIA+KL +S+ TV  ++G    K  + +R+  +  A +   +
Sbjct: 159 PRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHVVLFAFKHHLV 217


>gi|332296491|ref|YP_004438414.1| two component transcriptional regulator, LuxR family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179594|gb|AEE15283.1| two component transcriptional regulator, LuxR family
           [Thermodesulfobium narugense DSM 14796]
          Length = 231

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A++ L+ RE   L+L   GY+++EIA+ L +S  TV  Y    T KLD   R   +  AI
Sbjct: 150 ASKTLSSREDQVLRLLALGYSAKEIAQTLQISPKTVQTYRQRITTKLDLRRRSDIVRYAI 209

Query: 230 RFGYI 234
             G +
Sbjct: 210 SKGLL 214


>gi|325676336|ref|ZP_08156015.1| response regulator [Rhodococcus equi ATCC 33707]
 gi|325552897|gb|EGD22580.1| response regulator [Rhodococcus equi ATCC 33707]
          Length = 231

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 65/213 (30%), Gaps = 11/213 (5%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS- 82
           +        +    I       + Q+ +     Y +                   H    
Sbjct: 28  LSRWSAELGYVAAAITYRRSGDQGQR-VLANGGYAVP-VAQYLAREFVDDTRIFDHIRVA 85

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EFLML 141
              P+ W+ + +  +  +       +        G +  + L   +   V+  S     +
Sbjct: 86  SGRPVCWEDVPDFELTSAVE----DVLRPSGFREGSSVALGLERGQVTSVLHVSFTRSQV 141

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            + V         Q      +  ++ S     L+ RE   L L   G ++ EIA +L +S
Sbjct: 142 DSTVRAGIEALARQCRRIVADQSERESF---RLSGREHQILVLVAQGASNAEIAAELLIS 198

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  +L +   K    +R++   +A   G +
Sbjct: 199 RRTVATHLENIFAKTGTRSRVRVAVRATELGIL 231


>gi|288959032|ref|YP_003449373.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911340|dbj|BAI72829.1| two-component response regulator [Azospirillum sp. B510]
          Length = 228

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              +  L++RE   L+    G +++ IA  L ++  TV  +  +   K++A NR QA   
Sbjct: 157 MPTSGELSKREVQILRCLLAGQSNKAIARNLHITESTVKMHFKNVMRKINAQNRTQAAVW 216

Query: 228 AIRFGY 233
           AI+ G 
Sbjct: 217 AIQNGL 222


>gi|308067901|ref|YP_003869506.1| nitrate/nitrite response regulator protein narL [Paenibacillus
           polymyxa E681]
 gi|305857180|gb|ADM68968.1| Nitrate/nitrite response regulator protein narL [Paenibacillus
           polymyxa E681]
          Length = 212

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L +   + + +LT +E   L   G G  + EIA +L +S  TV  ++     KL   +R 
Sbjct: 133 LREDAGNLSDDLTPKEKEVLVELGQGACNREIASRLFISEFTVKKHVSQILAKLRLADRT 192

Query: 223 QAIAKAIRFGY 233
           QA   A   G 
Sbjct: 193 QAALYANAIGL 203


>gi|304438628|ref|ZP_07398567.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304368466|gb|EFM22152.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 233

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LT RE   L     G ++++I + LGLS  TV  +L S   KL   +R QA+   
Sbjct: 165 SRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYV 224

Query: 229 IRFGYI 234
           ++   +
Sbjct: 225 LKNKIV 230


>gi|260467229|ref|ZP_05813405.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029004|gb|EEW30304.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 210

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 7/199 (3%)

Query: 42  LDFPRRQQLICELHNYDLDSGDIPNILIETYGD--DFLFHFNSGLLPIIWQSIQEETVIE 99
            D    ++L+  +   D    +     +    D    +       + I+      + V  
Sbjct: 11  ADGAASRRLVVLVALADAARAEHLAASLAASDDLLPVVAGGGRADVAIV-DERSGDAVPT 69

Query: 100 SSGQLSVRLEGGLLPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155
           S  ++ +    G    AG  F V                 +    ++ +     H   + 
Sbjct: 70  SMPRVLLSGRAGGERPAGEVFAVMPTDADDLLIAAAARLAAAGYRVSGDGRGGRHEDFHA 129

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
             ++  E      +    L+ RE   L L  +G  ++ IA +L +SVHT   ++ +  +K
Sbjct: 130 GESEPFEDEADEQATRPALSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIK 189

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L A NR  AIA A+R G +
Sbjct: 190 LGAANRTDAIAIAMRQGLV 208


>gi|242372051|ref|ZP_04817625.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350163|gb|EES41764.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 218

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY ++EIAEKL +SV TV A+      KL+  ++ + +  
Sbjct: 150 SDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEY 209

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 210 ALKKKLL 216


>gi|238927983|ref|ZP_04659743.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238883943|gb|EEQ47581.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 223

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LT RE   L     G ++++I + LGLS  TV  +L S   KL   +R QA+   
Sbjct: 155 SRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYV 214

Query: 229 IRFGYI 234
           ++   +
Sbjct: 215 LKNKIV 220


>gi|170699428|ref|ZP_02890473.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135684|gb|EDT03967.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 71/245 (28%), Gaps = 20/245 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
           T   + S  E +  +  + +      FA + +  + +      L                
Sbjct: 60  TLANAQSTAERNRIVASLLHLTGFSTFAYFALEFSRERVESLYLHEAFT--PNTYRGDYV 117

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQ--------SIQEETVIESSGQL--SVRLEGGLLPFA 116
                  D          +PI+W           +++    +   L   ++        +
Sbjct: 118 RHNHHDIDPRTLDARVCNMPIVWDLQQLRREHRERDDGPCVTPAALDGFLQTMQEDGMCS 177

Query: 117 GIAFPVRLGFHKN-GYVIFTSEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSS 169
           GI + + +   +   ++ FT+             E  +   G           +   R  
Sbjct: 178 GIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALS-IGLSVHKFASPQLIATSRER 236

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT  E   L    +G + +EI  +L  S H V+ +L     +    NRIQ      
Sbjct: 237 AVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYLTS 296

Query: 230 RFGYI 234
           +   I
Sbjct: 297 KLELI 301


>gi|242239902|ref|YP_002988083.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242131959|gb|ACS86261.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech703]
          Length = 211

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 11/159 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      ES   L  RL      F  I   +             G   + ++   
Sbjct: 50  VDVAVMDIAMPDESGLSLLARLRQKRPTFRAIILSIYDTAAFVQSALDAGACGYLTKRCG 109

Query: 141 LAN--EVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                + +   H     +       L   ++R  A   LT RE     L  +G + + IA
Sbjct: 110 PEELVQAVRAVHAGGSYLCADAMRALRHSRQRPKALEALTPREREIFDLLVNGLSVKTIA 169

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+L LS  TV+ +  +   KL     ++ +  A++   +
Sbjct: 170 EQLDLSHKTVHVHRANVLDKLHCATTVELVHFALQHQLL 208


>gi|271965229|ref|YP_003339425.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508404|gb|ACZ86682.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 245

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 14/145 (9%)

Query: 104 LSVRLEGGLLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161
           L +R          +  P    L  +        S    L + ++        +++    
Sbjct: 92  LLLRAASDGALVEAVTLPADGFLLENDLTRDSLKSALADLDSGLMPMPGPLARKLLARVR 151

Query: 162 ELFKKRSS------------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                 ++            A+  LT RE   L L  +G ++++IA +LG+S H    ++
Sbjct: 152 RAESGEAARPPERPCPEADRASSPLTTRERETLSLMAEGLSNKQIARRLGISEHGAKRHV 211

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+  NR  A A A+  G +
Sbjct: 212 ANILAKLNCSNRTLATAVALNRGLL 236


>gi|107103588|ref|ZP_01367506.1| hypothetical protein PaerPA_01004658 [Pseudomonas aeruginosa PACS2]
 gi|218889645|ref|YP_002438509.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218769868|emb|CAW25629.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 222

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 54/212 (25%), Gaps = 11/212 (5%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79
           +      + A     Y I+        +    +L                   D     H
Sbjct: 14  MQAFTQVVPASLCVFYRID-----EDCRAHDFQLLRMPAGMHRDYLRH-YRDYDPLQPRH 67

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
             +   P++               L             +             +    +  
Sbjct: 68  CLASASPVVPLRQGIARQPAKDSALYQGFLRRHGICDVVEVLAHAQQRPVAALSLLRDAR 127

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIA 195
           + A              + +            +   + LT RE     L  DG +++ +A
Sbjct: 128 LGAFSDQELRQLRALHGLMELAAQACATPAASAERLQGLTPREREIALLLRDGVSNKCLA 187

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + LGL + TV  +L +   K  A +R + + +
Sbjct: 188 QCLGLGLPTVKTHLLNLFRKTGARSRTELVKR 219


>gi|283853336|ref|ZP_06370584.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
 gi|283571260|gb|EFC19272.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
          Length = 225

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +   +    A   LT RE   L+L  +G ++  IA  L +S  TV  +  +   KL   
Sbjct: 144 AVRRSRPADPAYDTLTRREQQILRLLAEGRSAGAIAADLYISRKTVENHRANIFGKLGLT 203

Query: 220 NRIQAIAKAIRFGYI 234
           +  + +  A+R G I
Sbjct: 204 SMAELVHYAVRLGLI 218


>gi|196228529|ref|ZP_03127396.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196227932|gb|EDY22435.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 8/165 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +        P     +       +  + +  L         +      G       +   
Sbjct: 43  MLAAYRQHRP-DVVLLDWRLPGPNGAEATALLREEHPGARVLMLSALDGDEHIHLAVRAG 101

Query: 137 EFL----MLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                        II+A  A +      +  LE      +    ++ RE   L  A  G 
Sbjct: 102 AAGYVLKSAERGEIIQAIRAVHGGKSYFSPGLEALLHDRARKVEISPREREVLVRAAAGE 161

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++EI + LG+S  TV  ++     KLDA +R  A+  AI+ G I
Sbjct: 162 RNKEIGDHLGISEATVKVFMARIFQKLDARDRAHAVVIAIKRGII 206


>gi|21241668|ref|NP_641250.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107032|gb|AAM35786.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 235

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      +  A +        H    V ++       N+ +        
Sbjct: 86  AAGDGHEAAWLMPPRPSDIREARVPIHALGTTHGMLCVAWSEGRPAPGNDDVQALQAFAL 145

Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E       ++R          L++RE   L L   G T+  +A +LG+S  TV
Sbjct: 146 LLPAMVAEPAKPVATRRRKPLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++     KL+  +R QA   A++ G 
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|148255164|ref|YP_001239749.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407337|gb|ABQ35843.1| putative transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 140

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             R+     LT RE   L L  +G +++EIA  LG+SVHT   ++GS   KLDA  R  A
Sbjct: 69  DGRAIDGFQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDA 128

Query: 225 IAKAIRFGYI 234
           +A A R G I
Sbjct: 129 VAHAARRGII 138


>gi|158338175|ref|YP_001519352.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158308416|gb|ABW30033.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 224

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +T RE   L+L   G ++ EI+E L ++  TV  ++ S   ++   +R Q    A   
Sbjct: 155 EGITPREQDVLKLVATGASNREISETLHITEKTVKNHVSSILSRVGVQSRTQLAIWANSA 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|148239259|ref|YP_001224646.1| two component system response regulator [Synechococcus sp. WH 7803]
 gi|147847798|emb|CAK23349.1| Two component system response regulator [Synechococcus sp. WH 7803]
          Length = 235

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                    LT RE         G  +  IA  LGLSV TV +++G+A  KL A +R Q 
Sbjct: 162 PDLPPLVEELTPRELEVAAGVARGLKNNAIATLLGLSVETVKSHVGNAMDKLGARDRTQM 221

Query: 225 IAKAIRFGYI 234
              A+ +G I
Sbjct: 222 AVTALLYGLI 231


>gi|114798675|ref|YP_760164.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114738849|gb|ABI76974.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC
           15444]
          Length = 137

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVIT 158
           SV         AGI+  V       G +I             +A     +       V+ 
Sbjct: 4   SVAFMMEHGIAAGISVMVPRLNGDYGSLICIYDRDNAHLASEVAARRAPDLLFLASSVVC 63

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
               L +    A   L+ ++ +CL+    G T +EIAE +  SV+TV  ++ +A   L A
Sbjct: 64  ALEHLAEGARPA--ELSPQQVTCLRWVKAGKTDQEIAEIILCSVNTVRYHIKTALKDLGA 121

Query: 219 VNRIQAIAKAIRFGYI 234
            NR  A+  AI    I
Sbjct: 122 SNRTHAVVLAIEHRLI 137


>gi|29831080|ref|NP_825714.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608194|dbj|BAC72249.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 224

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 36/78 (46%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + +   L     +A   LTERET  L L   G ++ EIA +L ++  T+  ++    VKL
Sbjct: 144 LAETPRLSASVHAAYGELTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKL 203

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA   A     +
Sbjct: 204 GLRDRTQAAVFAYEARLV 221


>gi|51893491|ref|YP_076182.1| hypothetical protein STH2353 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857180|dbj|BAD41338.1| conserved domain protein [Symbiobacterium thermophilum IAM 14863]
          Length = 611

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 44/170 (25%), Gaps = 8/170 (4%)

Query: 58  DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117
              + +       T  D  +       +      +   +        +           G
Sbjct: 444 PAAALERVKAGKGTQFDPLVVAALESHVWSAMSFLPAASGEAWQADATDPAR---GQPRG 500

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            A         +           +++ V         +   +              LT+R
Sbjct: 501 GAGSAPPPPVVDPQPPEAGAGPEVSSPV-----PPAERARQETAASVTSPHPDLSVLTQR 555

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           E   L     G ++ EIA +L LS  TV  ++     KL   +R +A   
Sbjct: 556 EREVLAHVAQGLSNREIAARLFLSEATVKTHVSRILQKLGLPDRTKAAVF 605


>gi|326796352|ref|YP_004314172.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547116|gb|ADZ92336.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 211

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT ++   L    +G  +++IA +L +S  T+ A++ +   KL   NR QA+  A    
Sbjct: 148 ELTPQQFKVLCYLHEGMLNKQIAYELNISEATIKAHITAIFRKLGVNNRTQAVLIASDLE 207

Query: 233 Y 233
            
Sbjct: 208 L 208


>gi|299533172|ref|ZP_07046556.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
 gi|298718702|gb|EFI59675.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
          Length = 255

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LTERE   L+L   G  S E+A  L +S  TV+ ++ +   K+    R QA+  AI  
Sbjct: 193 ESLTEREVEILKLIAQGKNSLEVASYLQISPLTVSTHIKNIYGKMQVRTRAQAVRCAILI 252

Query: 232 GYI 234
           G I
Sbjct: 253 GII 255


>gi|258620778|ref|ZP_05715813.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573]
 gi|258586976|gb|EEW11690.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L    +
Sbjct: 80  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 139

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 140 GSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199

Query: 227 KAIRF 231
             +  
Sbjct: 200 LYLER 204


>gi|239943689|ref|ZP_04695626.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990140|ref|ZP_04710804.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447153|ref|ZP_06586543.1| two-component system DNA-binding response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291350100|gb|EFE77004.1| two-component system DNA-binding response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 231

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 113 IRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231


>gi|271965920|ref|YP_003340116.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509095|gb|ACZ87373.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 219

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 35/106 (33%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +     +    + ++        +                 LT RE     L   G
Sbjct: 109 EPADLLQGVRVAARGDALLSPAITRRLIAEYVARRPASAPEGLDVLTNREREVTALVARG 168

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +++EIA  + +S  T   ++  A  KL A +R Q +  A   G +
Sbjct: 169 LSNDEIAVHMVISPTTAKTHVSRAMTKLRARDRAQLVVFAYESGLV 214


>gi|229494528|ref|ZP_04388291.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229318890|gb|EEN84748.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 222

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                R+     LT+RET  L+L   G ++++IA +L LS  TV  ++ +   KL   NR
Sbjct: 150 APADDRAPELPRLTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANR 209

Query: 222 IQAIAKAIRFGY 233
           ++    AI  G 
Sbjct: 210 VELTRYAIEQGL 221


>gi|256389895|ref|YP_003111459.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356121|gb|ACU69618.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 234

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V +    +  +       ++    +   +     +  D              LT RE   
Sbjct: 128 VHMVRAGDAMLAPAITRRLVERFAVPTVNPRTEALHKDLA-----------TLTPREREV 176

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L G G ++ E+A +  LS  TV  ++     KL+  +R QA+  A   G I
Sbjct: 177 LGLLGRGLSNAELAARFHLSEATVKTHVARILAKLNLRDRAQAVVVAYETGLI 229


>gi|227875745|ref|ZP_03993873.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269976705|ref|ZP_06183681.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|306819021|ref|ZP_07452738.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227843687|gb|EEJ53868.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269935070|gb|EEZ91628.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|304648214|gb|EFM45522.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 220

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   ++L  +   +++IA +L +SV TV  ++ S   KL   NR   +AKA R G 
Sbjct: 159 LSERELQVVRLVAEALENKQIASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGL 218

Query: 234 I 234
           +
Sbjct: 219 L 219


>gi|261346511|ref|ZP_05974155.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
 gi|282565504|gb|EFB71039.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
          Length = 248

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 67/219 (30%), Gaps = 18/219 (8%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            L  + + I   N  +Y            + + ++   + D+ +          D F   
Sbjct: 24  LLSWLSSFIAFDNAIIYAFEKGGA----PRFLSKVETRNSDNINRLYQRGAYLMDPFYQE 79

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
              G    +    +            +               + +   +   + F +E  
Sbjct: 80  LLKGGSSKVLTLKELAPKGFHHTDYYLNFYRKTGWCDEAGLLLEISRDRQLAIFFGNEEK 139

Query: 140 MLANEVIIEAHG-ACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLA 185
            L +E    A     + +I     L K     + +             LT RE   ++L 
Sbjct: 140 PLLSEESKRAPLKEAFDIIRSIARLHKDVVPNSVSSDYRHTDLQTCFGLTPRECEVVELI 199

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +G  S +IA+ L +S+ TV  +  +   KL   ++++ 
Sbjct: 200 LEGKGSPQIADTLFISLGTVKNHRKNIYQKLGIGSQVEL 238


>gi|134094678|ref|YP_001099753.1| putative two-component response regulator protein [Herminiimonas
           arsenicoxydans]
 gi|133738581|emb|CAL61626.1| Two-component response regulator, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 315

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 9/118 (7%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +  V       M   + I+         +     L      A
Sbjct: 190 DDGSNMVLVASIAEPAGDSLLVRNMGSAGM---DEIMLLLELSSNRMLPTGRL------A 240

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +  LT RET  L     G T+ +I + L LS  TV+ +L     KL    R  A+A A
Sbjct: 241 SAALTPRETEVLSWLAKGKTNRDIGDILQLSPRTVSKHLEHIFEKLGVETRSAAVAMA 298


>gi|315181638|gb|ADT88551.1| response regulator [Vibrio furnissii NCTC 11218]
          Length = 204

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++E              V+  +L   + 
Sbjct: 75  VILTVSDSAADIEAIVRAGADGYLLKDTEPDQLVELLKEAVHGNKAYSDVVAAYLRDRQD 134

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +      LT+RE   L     GY +++IA++L +S  TV  ++ S   KL   +R  A  
Sbjct: 135 QQDVFDLLTDREAQILGEVAKGYRNKQIADRLFISESTVKVHMKSLLKKLRVPSRTAATV 194

Query: 227 KAIRF 231
             +  
Sbjct: 195 LFLER 199


>gi|284009118|emb|CBA76121.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 205

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 56/197 (28%), Gaps = 11/197 (5%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107
             +   + N   +  ++         D  + +    +    W         E       +
Sbjct: 6   NPMDVIIINNHTEWFELYIKGSYQLIDPVIINAMERVDDFHWDEKIM-IYSEMKLPKIFK 64

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---------NEVIIEAHGACYQVIT 158
                    G  F +         +                    +          ++++
Sbjct: 65  HSKKYNINKGHTFVLHDYLTNLAVLSIFETGSDDNNKYTINSNKEKFQQLLIKTHQKLLS 124

Query: 159 DFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            + E+ K R+      L+ RE   L     G T ++IA+ LG+   T+  ++G+   KL 
Sbjct: 125 LYDEIEKGRNQYKPSGLSSRENEILYWVSIGRTYQDIAKMLGIKQGTIKFHMGNVVKKLG 184

Query: 218 AVNRIQAIAKAIRFGYI 234
             +   AI  A     I
Sbjct: 185 VSSTKHAIKLATELKMI 201


>gi|258620786|ref|ZP_05715821.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM573]
 gi|258586984|gb|EEW11698.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM573]
          Length = 208

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 15/169 (8%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +   P+    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALT-HSPVDVAIIDISMPDENGLSLLERLRQHNPNFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + S+    +        V       C   + +        ++   +LT+RE     L 
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLVDLTKREVEVFDLL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G   ++IA+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 157 VQGQDVKDIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFALQHHLL 205


>gi|239833383|ref|ZP_04681711.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239821446|gb|EEQ93015.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 233

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194
            +  +V+I    A   ++     +  + ++A  N     L+ RET  L+  G G  + EI
Sbjct: 131 PIDFDVLILTIRARLNLVARVKAISNQPAAAEPNGEFIHLSRRETEVLKEIGTGQRNGEI 190

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A KLGLS HTV+ Y+ +   KL   +R +A  +AIR G +
Sbjct: 191 ARKLGLSEHTVSDYVKAIYQKLSVSSRAEATREAIRRGLV 230


>gi|116626889|ref|YP_829045.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230051|gb|ABJ88760.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 215

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 40/76 (52%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L+  ++ S    +LT RE    QL  +G +++EIA +L LS+HTV  +      KLD 
Sbjct: 139 ARLQDAREVSDRFESLTGRERQVYQLLAEGNSNKEIANRLNLSLHTVETHRWHIMEKLDL 198

Query: 219 VNRIQAIAKAIRFGYI 234
            +  + +  A+R G +
Sbjct: 199 HSTAELVLSAVRRGLV 214


>gi|311899330|dbj|BAJ31738.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 223

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               + +     + +        LT RE   + L   G ++++IAE+L ++  T   ++ 
Sbjct: 135 ALIGRFLAQPDPVRRAALPRLDVLTAREQQVVALVAAGLSNDDIAERLFVTPLTAKTHVN 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
            A  KL A +R Q +  A   G +
Sbjct: 195 RAMTKLGARDRAQLVVIAYETGLV 218


>gi|284043929|ref|YP_003394269.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948150|gb|ADB50894.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 221

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 36/78 (46%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
               +    +  +    LTERE   L+L   G T+ EIA  L ++  TV  ++GS   KL
Sbjct: 137 YRRLVAPAAREGTRLELLTEREHDVLRLMARGATNAEIAATLFVAEATVKTHVGSIFSKL 196

Query: 217 DAVNRIQAIAKAIRFGYI 234
           D  +R  AI  A   G I
Sbjct: 197 DVRDRAAAIVYAYDHGVI 214


>gi|240171514|ref|ZP_04750173.1| two-component transcriptional regulatory protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 218

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   +   L    +       LTE+E + L    +G T+ +IA ++ L+  TV  Y
Sbjct: 125 LDNRAAAALMAKLRGGAEHHDPLSGLTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNY 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRFG 232
           +     KL    R QA   A R G
Sbjct: 185 VSRLLAKLGMERRTQAAVFASRLG 208


>gi|226363981|ref|YP_002781763.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242470|dbj|BAH52818.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 322

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 67/243 (27%), Gaps = 30/243 (12%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
            +SS + +      +          L  ++     P     +  L         +P+   
Sbjct: 79  AASSAELMQRACERVAELCSVDKVVLSRLDGDRIIP-----VAALSTAPGTMPSLPSEFG 133

Query: 70  ETYGDDFLFHFNS------GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
              G        +        +P   + +       +   +       LL    +    R
Sbjct: 134 LPDGSPEADALETNTVTVGSHVPAELRELLGANGFTTVPVVVDGTAAALLHVGAVLDGSR 193

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------------- 169
                    +    F  +  E   E   A  +             S              
Sbjct: 194 RHALGVFAEVLGGHFERVGLESRRERQNALLRESARRWTGDDAPPSHGALDLAPSQADRD 253

Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                    LTERE   ++L   G ++  IA +L ++V TV +++     KL A NR + 
Sbjct: 254 AAEQRLLEPLTEREADVVRLILTGASNSAIAAELVITVDTVKSHVKRILRKLGATNRAEL 313

Query: 225 IAK 227
           IAK
Sbjct: 314 IAK 316


>gi|281421139|ref|ZP_06252138.1| transcriptional regulator [Prevotella copri DSM 18205]
 gi|281404674|gb|EFB35354.1| transcriptional regulator [Prevotella copri DSM 18205]
          Length = 212

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 41/85 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           +    Q + + L   K+      NLT+ ET  L+    G T++EIAEK   S HTVN + 
Sbjct: 121 NRFVCQRMMEVLLAPKQEEQEKINLTKTETEILKDIALGMTTKEIAEKRFSSFHTVNTHR 180

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL   N  +A   A+R G +
Sbjct: 181 KNIFRKLGVNNVHEATKYALRAGLV 205


>gi|282861721|ref|ZP_06270785.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563537|gb|EFB69075.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 229

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +   + LT RET  L+L   G +++EIA +L ++  TV  ++     K D  +R
Sbjct: 150 AFRSGPARRLKGLTPRETEVLELVARGLSNQEIAGRLVVAEQTVKTHVSRILAKADLRDR 209

Query: 222 IQAIAKAIRFGYI 234
            QA+  A   G +
Sbjct: 210 AQAVIFAYESGLV 222


>gi|160893007|ref|ZP_02073795.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50]
 gi|156865090|gb|EDO58521.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            L+   +    + NLTE+E   ++L  DG  ++EIAE+L LS  TV  YL +  +KLD  
Sbjct: 134 LLQTDDRFDYLSYNLTEKEFELIRLVADGLNNKEIAEQLFLSEGTVRNYLSNILMKLDLR 193

Query: 220 NRIQ 223
           +R Q
Sbjct: 194 DRTQ 197


>gi|84495477|ref|ZP_00994596.1| putative two-component response regulator [Janibacter sp. HTCC2649]
 gi|84384970|gb|EAQ00850.1| putative two-component response regulator [Janibacter sp. HTCC2649]
          Length = 234

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 43/113 (38%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +R     +  +       ++A  V   A  A               +     LT+RE   
Sbjct: 111 IRSVAGGHALLAPEVTTRVIAAMVGTGAGAAAATATPGTGSTSPGSADQISRLTDRELEV 170

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L G G ++ EIA  L L   T+  ++ +   KL   +R+QA+  A   G I
Sbjct: 171 LILMGRGRSNAEIAADLFLGEATIKTHVSNCLAKLHLRDRVQAVVFAYEVGLI 223


>gi|260459364|ref|ZP_05807619.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034918|gb|EEW36174.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 219

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTE 176
            P+ +   K G + F ++     +E ++ A     +     L L  +  +       L+ 
Sbjct: 103 VPMTVKAMKAGAIEFLTK--PFDDEELLSAIKLALERSKSALALDSEFQALKDRHTSLSR 160

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   + L   G  +++I  +LG+S  TV A+ G A  K+ A +  Q +  A R G 
Sbjct: 161 REQEVMTLVVSGLLNKQIGFELGISEITVKAHRGQAMRKMQARSLAQLVHMAARLGI 217


>gi|224825495|ref|ZP_03698600.1| transcriptional regulator, LuxR family [Lutiella nitroferrum 2002]
 gi|224602416|gb|EEG08594.1| transcriptional regulator, LuxR family [Lutiella nitroferrum 2002]
          Length = 231

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 54/212 (25%), Gaps = 13/212 (6%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           +  +   +   + A Y ++  L     +     LH                  D      
Sbjct: 15  IDSLTALVPVSSCAFYRVDEQL-----RPRDWLLHKMAGRVHRSYVSQ-YQQHDPLHPMR 68

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT----- 135
                 ++    +   +    G               +   VR                 
Sbjct: 69  FGSGRRVVVPMDEVLPLRLRPGSPYSAFMARNAMCDVVELFVRSKGKVVAGFSLIRGEEL 128

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEE 193
             F     E++   H          L    + +       LT RE     L  DG  ++ 
Sbjct: 129 GHFSAGELEMLEYLHKLVELAAESGLPQQGEPAGFTQFERLTPREQQVALLVRDGACNKT 188

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           IA  LGL + TV  +L     K   VNR + +
Sbjct: 189 IARDLGLGLPTVKTHLQHLFRKFQVVNRTELV 220


>gi|221209676|ref|ZP_03582657.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
 gi|221170364|gb|EEE02830.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
          Length = 244

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRR-QQLICELHNYDLDSGDIPNILIETY 72
             +    LH   +   A  FA  +           +    EL                  
Sbjct: 12  AADWQRALHACVDAFDA--FASPSAIVFYRLDASGEPADFELFGMPESMHRTYVA-RYRM 68

Query: 73  GDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            D        +    ++  + Q       +     R          +   +R      G 
Sbjct: 69  LDPLHPSRCAADARTVVTLASQLPDECRDASAYWTRFLRRHGVADVVEIWLRDDGRTVGA 128

Query: 132 VIFTSEFLMLAN---------------EVIIEAHGACYQVITDFLELFKK--RSSAARNL 174
                     A                + +          ++  L   +   R      L
Sbjct: 129 FSLLRFDTRGAARGGDGASTRFAPGEIDALARLQPLAEAALSPLLRTRRGIHRIECEARL 188

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           T RE    +L  DG +++EIA  L L   T+  +L     KL   NR + +
Sbjct: 189 TYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239


>gi|21242903|ref|NP_642485.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108399|gb|AAM37021.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 213

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L L   G ++++I   L +S  TV A++ +   KL   +R  A+  A+R 
Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRR 206

Query: 232 GYI 234
           G +
Sbjct: 207 GIL 209


>gi|27376447|ref|NP_767976.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349587|dbj|BAC46601.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 225

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               ++       +     A     LT RE   L     G++  EIA  LGLS  TV  +
Sbjct: 138 IARFIVRRTQNSAEPPPGPALNTARLTPREIDILWGIAKGFSYAEIASHLGLSRQTVPGH 197

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL+   R +A+ +A++ G I
Sbjct: 198 IKNIYRKLEVHTRSEAVFEAVQQGLI 223


>gi|88859107|ref|ZP_01133748.1| putative csg operon transcription regulator (LuxR family) protein
           [Pseudoalteromonas tunicata D2]
 gi|88819333|gb|EAR29147.1| putative csg operon transcription regulator (LuxR family) protein
           [Pseudoalteromonas tunicata D2]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             LT RE + ++L   G  ++++AEKL +S HTV  +L SA  K +A NRI+    A +
Sbjct: 136 EKLTNRERTIIRLVSQGAKNKDVAEKLHISDHTVKTHLYSAFRKTNARNRIELANWAQK 194


>gi|124266085|ref|YP_001020089.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258860|gb|ABM93854.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 896

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 7/172 (4%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
            +   +     +  + H          +S+++   +   G+             G A  V
Sbjct: 731 RVYRDIRLYVFEALMLHDKGSPNGAH-RSLRKALQLARPGRYVRCFLDE-----GRAI-V 783

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
            +   +  + + ++       +   +            L   + R      L+ERE   L
Sbjct: 784 SMLREEYQHFLQSAADGQAPADPDRDFIELLLAASGTDLGQPRGRHHLTDPLSEREKEML 843

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Q   +G  ++EIA +L +S +TV  +L +   KL    R+QAI  A     +
Sbjct: 844 QFLANGVANKEIASRLFVSENTVKFHLKNIYSKLGVSGRVQAINAARTLRLV 895


>gi|330998013|ref|ZP_08321844.1| hemerythrin HHE cation binding domain protein [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569314|gb|EGG51094.1| hemerythrin HHE cation binding domain protein [Paraprevotella
           xylaniphila YIT 11841]
          Length = 326

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               SA   L++RE   +     G +++EIAE+L +SV+TV  +  + + KL   +    
Sbjct: 250 DGEDSANDALSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGL 309

Query: 225 IAKAIRFGYI 234
              AI  G I
Sbjct: 310 TIYAIVNGLI 319


>gi|331699960|ref|YP_004336199.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954649|gb|AEA28346.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 223

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 152 ACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              + +     L   +    A + LT RE+  L L   G ++  IA +L +S  TV ++L
Sbjct: 138 LAGRAVDTAARLQSDEFWPGARQGLTHRESEVLSLMVTGLSNRGIATRLVVSDETVKSHL 197

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
            S   KL   +R  A+A A+R G 
Sbjct: 198 RSIYRKLGVGDRTAAVATALREGI 221


>gi|298242939|ref|ZP_06966746.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555993|gb|EFH89857.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 928

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ERE   L L   G ++++IAE L +++ TV  ++     KL   NR+QA+A+A
Sbjct: 859 PLVEPLSERELEVLHLIARGDSNQKIAEMLMITLDTVKRHVTHIFEKLGVSNRVQAVARA 918

Query: 229 IRFGYI 234
               ++
Sbjct: 919 RALDWL 924


>gi|169825087|ref|YP_001692698.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831892|dbj|BAG08808.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 208

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            + +  LT RE   L+L   G  +++IAE+LG+S++TV  ++     K +  +R Q   +
Sbjct: 138 MAKSTELTPREIEVLRLLTTGAGNDQIAEELGISLNTVKTHIKHMLDKTEFTSRTQLAIQ 197

Query: 228 AIRFGYI 234
           A   G++
Sbjct: 198 ARITGFV 204


>gi|290955466|ref|YP_003486648.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260644992|emb|CBG68078.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 342

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +  H     V+   + + +  +     L+ RE   L  A  G T++ IA+ L LS  TV+
Sbjct: 238 VRRHTLGSAVVRRAVLVHETPAPLPYGLSPRELEVLTRAATGMTNQAIAQALFLSPRTVH 297

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++     K  A +R +A A A+R G +
Sbjct: 298 THVEHLLRKTGAASRAEATALAVRDGLL 325


>gi|317048150|ref|YP_004115798.1| LuxR family two component transcriptional regulator [Pantoea sp.
           At-9b]
 gi|316949767|gb|ADU69242.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           At-9b]
          Length = 206

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK---KRSSAARNLT 175
             PV +   K G   F ++   +  E +++A     Q+  + L   +     +S   +LT
Sbjct: 85  TIPVTVRAMKTGACEFLTK--PVDPEQLLQAVAEALQMAEENLASSQEKYDITSRHLSLT 142

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE+  + LA  G  +++IA ++G+S  T   +      K++  +    +  A R   +
Sbjct: 143 PRESEVMLLAISGLLNKQIAAEMGISEITAKVHKRRVMEKMNVRSLSDLVRAAERLNIL 201


>gi|229181601|ref|ZP_04308926.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601797|gb|EEK59293.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 189

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   + LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVMLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|329937507|ref|ZP_08287065.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329303383|gb|EGG47270.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 219

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 142 ANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           A    + A     +V+  FL      +   + R L+ RE   L L G   ++ EIA +L 
Sbjct: 120 ARGEALLAPTVLTRVLDRFLRTLPDPEPPPSLRELSGREREVLTLIGRALSNAEIAARLC 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV  ++ +   KL   +R+QA+  A   G +
Sbjct: 180 LSEATVKNHVTAVLRKLGLRDRVQAVVTAYDHGLV 214


>gi|325963470|ref|YP_004241376.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469557|gb|ADX73242.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 70/224 (31%), Gaps = 29/224 (12%)

Query: 14  LQELSPRLHLIQNRIKARNFALY-----TINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           L +       +++ ++   F +         +    P  Q  I  L     D   I    
Sbjct: 4   LDDHELVRQGLRDLLEGEGFVVVGESGSAAEATRRIPALQPDIAILDGRLPDGTGIEVCR 63

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  L H          Q+I+   +  +SG +  ++    L               
Sbjct: 64  DVRSFDPRL-HCLILTSYDDEQAIRGAVLAGASGYVLKQIRSDDLL-------------- 108

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                        A E + E  G   ++++   +           L+ +E   L L G G
Sbjct: 109 ------AGIRRAAAGESLFEP-GVKERIVSGLSKTPTD--PRMEGLSAQEKKVLTLIGQG 159

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            T+ +I E+L L+  TV  Y+ S   KL    R QA     R G
Sbjct: 160 LTNRQIGEELFLAEKTVKNYVSSILAKLGFERRTQAAVYVTRSG 203


>gi|229489617|ref|ZP_04383480.1| response regulator [Rhodococcus erythropolis SK121]
 gi|229323714|gb|EEN89472.1| response regulator [Rhodococcus erythropolis SK121]
          Length = 219

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 3/121 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +       G         +    +   A                +    
Sbjct: 99  RGGARGYVTKTISGSELAEGVRRVAGGDAVFGPRL---AGFVLDSFTGRSNAPEPQLDPE 155

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE L +SV TV  +  +   K    NR      A R
Sbjct: 156 LDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHR 215

Query: 231 F 231
            
Sbjct: 216 R 216


>gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 231

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +++    + +       +LT RE S L L  +G  ++EIA +L  SV  V  Y+     K
Sbjct: 152 LLSPRNAITQTPPPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSK 211

Query: 216 LDAVNRIQAIAKAIRFGY 233
               +R + +  A+  G 
Sbjct: 212 TGTNSRTELVRFALEHGL 229


>gi|254229254|ref|ZP_04922672.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262393135|ref|YP_003284989.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25]
 gi|151938178|gb|EDN57018.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262336729|gb|ACY50524.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    + A  +LT RE   L+    G ++ ++AE+L +S  T+ ++L     KL   NR+
Sbjct: 143 INTHTAPATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202

Query: 223 QAIAKA 228
           QAIA A
Sbjct: 203 QAIAWA 208


>gi|153839891|ref|ZP_01992558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260902461|ref|ZP_05910856.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|149746588|gb|EDM57576.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308109572|gb|EFO47112.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|328471379|gb|EGF42274.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 200

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    + A  +LT RE   L+    G ++ ++AE+L +S  T+ ++L     KL   NR+
Sbjct: 129 INTHTAPATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 188

Query: 223 QAIAKA 228
           QAIA A
Sbjct: 189 QAIAWA 194


>gi|94495818|ref|ZP_01302397.1| probable transcriptional regulator [Sphingomonas sp. SKA58]
 gi|94424510|gb|EAT09532.1| probable transcriptional regulator [Sphingomonas sp. SKA58]
          Length = 491

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 20/240 (8%)

Query: 13  SLQELSPRLHLIQ--NRIKARNFALYTINSALDF--PRRQQLICELHNYDLDSGDIPNIL 68
           S  +L PR          + R    + +           ++L+C+ ++            
Sbjct: 246 SFADLEPRRQAENELRHSEERFVTTFRLAPVAMAITTWDERLLCDTNDAFHQLTGWSPDE 305

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                   L         +              G+ +            +     +   K
Sbjct: 306 AMGKAMPALR-LWEEPKFLDAALEDLAERTAFRGRDARLRAKDGGITDCLVSAASISLRK 364

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDF-------------LELFKKRSSAAR--N 173
           +  +++  + +       +E  GA   V+ D              L      +       
Sbjct: 365 DTCILWVIQDIHERRHSELELIGAIEAVMKDTNWFSRTVVEKLANLRAPHGAARPVETSE 424

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G     IA+++G+S +T+  ++     K+    R QAI  A   GY
Sbjct: 425 LTRREKEVLSLLCGGGDDAAIAKEMGVSRNTLRNHVARVYAKIGVNRRAQAILWARERGY 484


>gi|332710029|ref|ZP_08429984.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332351172|gb|EGJ30757.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 241

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE + L+L   GYT++EIAE+L L + TV  ++ S   KL   +R QA  +A+R G
Sbjct: 179 PLTERELTVLELIVAGYTNDEIAERLLLGLGTVKTHIRSVLWKLCCDDRTQAAVQALRSG 238

Query: 233 YI 234
            +
Sbjct: 239 LV 240


>gi|297580300|ref|ZP_06942227.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385]
 gi|297535946|gb|EFH74780.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L    +
Sbjct: 80  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 139

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 140 ASNPFDTLTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 199

Query: 227 KAIRF 231
             +  
Sbjct: 200 LYLER 204


>gi|206975821|ref|ZP_03236732.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962842|ref|YP_002341420.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|206745915|gb|EDZ57311.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067023|gb|ACJ81273.1| DNA-binding response regulator [Bacillus cereus AH187]
          Length = 200

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|167033593|ref|YP_001668824.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860081|gb|ABY98488.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1]
          Length = 262

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 56/212 (26%), Gaps = 22/212 (10%)

Query: 34  ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93
           +   +  +   P+                      +    D F           + +   
Sbjct: 42  SWVALLFSAGQPQVFAECPSEDGNPDPLFQDYLNGLYLL-DPFYVASREAAASGLVRLAD 100

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHG 151
                        R     +    I F V+L   +   +       F +    ++     
Sbjct: 101 VAPECFEQTDYYQRYFRLNVVADEIQFNVQLDAQRTLCLSLGCKRRFTLEQVTLLELLRP 160

Query: 152 ACYQVITDFLELFKKRSSAA-------------------RNLTERETSCLQLAGDGYTSE 192
               ++   +   ++   AA                     LT RE    +L   G +S+
Sbjct: 161 WVSGLMRQRMAFERELLEAATKPAPHWQSRMEEKVEQMQSPLTGRELEVGRLMLSGCSSK 220

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           EIA KL +SV TV  +      KL   ++ + 
Sbjct: 221 EIARKLEISVETVKVHRKHMYSKLGIKSQSEL 252


>gi|91225640|ref|ZP_01260714.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269967600|ref|ZP_06181651.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|91189760|gb|EAS76034.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269827795|gb|EEZ82078.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    + A  +LT RE   L+    G ++ ++AE+L +S  T+ ++L     KL   NR+
Sbjct: 143 INTHTAPATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202

Query: 223 QAIAKA 228
           QAIA A
Sbjct: 203 QAIAWA 208


>gi|28869333|ref|NP_791952.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852574|gb|AAO55647.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|330878542|gb|EGH12691.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|331019215|gb|EGH99271.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 222

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     +S    LT RE   L L   G+++ EI EKLG
Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGASVPEALTPRERQVLGLVAGGFSNREIGEKLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|332161247|ref|YP_004297824.1| GerR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665477|gb|ADZ42121.1| GerR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330861302|emb|CBX71545.1| transcriptional regulatory protein uhpA [Yersinia enterocolitica
           W22703]
          Length = 209

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      ES   L  RL   +  F  I   +             G   + ++   
Sbjct: 48  VHVAVMDISMPDESGLSLLKRLRQKMPQFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107

Query: 141 LAN--EVIIEAHGACYQVITDFLEL---FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                + +   HG    +  D L       ++      LT RE    QL  +G + + IA
Sbjct: 108 PDELVQALRTVHGGGLYLCADALRALRHMPQQPQQLAILTPREKEVFQLLINGISVKSIA 167

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+L LS  TV+ +  +   KL+    ++ +  A++   +
Sbjct: 168 EQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|304394580|ref|ZP_07376499.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130]
 gi|303293241|gb|EFL87622.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130]
          Length = 221

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   LQ    G ++ EIAE LG+S  TV+++  +   K    +    + +A+R G
Sbjct: 154 ELTSREMQVLQSLAKGRSNREIAEVLGVSPKTVDSHRSNIMRKFGVHSIATLLVEAMRQG 213

Query: 233 YI 234
            I
Sbjct: 214 LI 215


>gi|254688650|ref|ZP_05151904.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 6
           str. 870]
 gi|256256897|ref|ZP_05462433.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 9
           str. C68]
 gi|260754126|ref|ZP_05866474.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260883151|ref|ZP_05894765.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297247749|ref|ZP_06931467.1| two-component system, NarL family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|260674234|gb|EEX61055.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872679|gb|EEX79748.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297174918|gb|EFH34265.1| two-component system, NarL family, response regulator [Brucella
           abortus bv. 5 str. B3196]
          Length = 213

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V    LE  +KRS     L+ RE   L L  +G ++ EIA +LG+S  TV  +  
Sbjct: 129 YFSSGVSEALLESGEKRS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +       AI    
Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208


>gi|253999276|ref|YP_003051339.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|253985955|gb|ACT50812.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
          Length = 213

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                     ++     ++    L++RE         G T+ +IAE L LS  TV  +L 
Sbjct: 128 LEATVAQQMAIQQLSGEANPVDVLSDREFEVFIALAKGKTTNDIAETLSLSPRTVGTHLY 187

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL+A N  +    A+R G I
Sbjct: 188 NIKQKLNANNSAEIALIAMRSGLI 211


>gi|322432955|ref|YP_004210204.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9]
 gi|321165182|gb|ADW70886.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 40/88 (45%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           I    A  + I   +       +    L+ RE   L+    G +++ IA  L LS HTV 
Sbjct: 120 IRRVHAGQRRIPPEIAAEMAEHAGDDILSAREIEVLRHVAAGNSNKIIASNLTLSEHTVK 179

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ +   KL A +R  A+  A+R G++
Sbjct: 180 GHIKNILSKLGASDRTHAVMIALRRGFL 207


>gi|320009929|gb|ADW04779.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 222

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A+   + A     ++IT+F ++ +     A      LTERET  L 
Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKIAEAPRPPAMARIGDLTERETEVLV 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA  L ++  T+  ++    VKL   +R QA   A     +
Sbjct: 169 LIAQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|271500356|ref|YP_003333381.1| LuxR family two component transcriptional regulator [Dickeya
           dadantii Ech586]
 gi|270343911|gb|ACZ76676.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech586]
          Length = 215

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 16/142 (11%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY----- 154
             RL    L    + F V            +         M   ++++  H A       
Sbjct: 70  LARLRETSLSGRIVVFTVSNHEEDVISAFKSGADGYLLKDMEPEDLLVALHQAAAGKMVL 129

Query: 155 ------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                  +     E     +   + LT RE   L+L   G  ++ IA KL ++  TV  +
Sbjct: 130 SDTLTPVLAASLRETRSTDTRDIQQLTPREKDILKLIAQGLPNKVIARKLTITESTVKVH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIR 230
           +     K+   +R++A    ++
Sbjct: 190 VKHLLKKMKLRSRVEAAVWVVQ 211


>gi|225181065|ref|ZP_03734512.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168262|gb|EEG77066.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L+  KK+  A+  LT+RE   L+L G+G +++EIA+KL L+  TV  Y+ +  VKL
Sbjct: 132 LHAILKGEKKKDPASFQLTKREFEVLKLVGEGLSNDEIAQKLFLTPGTVRNYISNLLVKL 191

Query: 217 DAVNRIQAIAK 227
           +  +R Q    
Sbjct: 192 NLRDRTQLAIF 202


>gi|302529657|ref|ZP_07281999.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302438552|gb|EFL10368.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 276

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSS----AARNLTERET 179
                   +  +E   L  E+   A     +      L + ++           LT RE 
Sbjct: 159 RRMAAPTAVPAAERGDLHAELTAIAGSITDETARQRLLAVCERLRPELDLPGVALTPREI 218

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L  +G T++EI+++LGL  +TV +YL  A  KL   NR+QA+ +A   G +
Sbjct: 219 DVLRLVSEGCTNDEISDRLGLLPNTVKSYLKHAMRKLAVSNRVQAVNRARAAGLL 273


>gi|262041407|ref|ZP_06014611.1| monoamine regulon transcriptional regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041261|gb|EEW42328.1| monoamine regulon transcriptional regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 227

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 12/215 (5%)

Query: 15  QELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             +  R L  I   I   +   Y +N+ L     +     LHN   ++            
Sbjct: 11  DAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPENYILHNISDNTHQQYLE-NFQPL 64

Query: 74  DDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
           D  L  HF+     +   +     + + +                    +R        +
Sbjct: 65  DPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERRIVAGI 121

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                 +  ++E    A      V     +  ++       LT +E   + +  +G +++
Sbjct: 122 SLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEEDDLPAILTAKEREIVGMVREGASNK 180

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            IA +L +S+ TV  +L +   K + VNR + +++
Sbjct: 181 LIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215


>gi|302346377|ref|YP_003814675.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
 gi|302151055|gb|ADK97316.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 36/89 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +      C       L            LT+ ET  L+    G T+ EIAEK   S HTV
Sbjct: 119 LQGQRFLCQHATNMILAPTALADKEIVALTKTETEILKEIALGATTREIAEKRFSSFHTV 178

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           N +  +   KL   N  +AI  A+R G +
Sbjct: 179 NTHRKNIFRKLGVNNVHEAIRYAMRSGLV 207


>gi|291302120|ref|YP_003513398.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571340|gb|ADD44305.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
              +     LT RE   + L G G ++EEI+  L +S  T   ++  A  KL + +R Q 
Sbjct: 146 DGPAPLVSALTPREREVVTLVGQGKSNEEISRLLHISHTTAKTHVSRAMTKLGSRDRAQL 205

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 206 VVAAYESGLV 215


>gi|51894355|ref|YP_077046.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858044|dbj|BAD42202.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 203

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L+L   G+T++EIA +L +SV TV  Y      KL    R + +  A+   
Sbjct: 142 PLSPRELEVLRLVALGHTNQEIALQLNVSVRTVETYKTRICEKLGVYTRSEMVRYALEHK 201

Query: 233 Y 233
            
Sbjct: 202 L 202


>gi|317969061|ref|ZP_07970451.1| DNA-binding response regulator [Synechococcus sp. CB0205]
          Length = 236

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              + + +    LT RE   LQL   G  ++ I ++L LSV TV  ++     KL+A +R
Sbjct: 158 AFAEGQGTPLAQLTPREVDILQLMAGGTENQGIGQRLHLSVETVKDHVRHIFHKLNAKSR 217

Query: 222 IQAIAKAIRFGYI 234
           IQA  + IR G +
Sbjct: 218 IQAAVQGIRLGLV 230


>gi|254385834|ref|ZP_05001154.1| erythropoiesis-stimulating protein [Streptomyces sp. Mg1]
 gi|194344699|gb|EDX25665.1| erythropoiesis-stimulating protein [Streptomyces sp. Mg1]
          Length = 331

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 79/227 (34%), Gaps = 15/227 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L E+  R+  + + +++       ++ A     R + +      D         
Sbjct: 116 VEQLVGLDEIRNRISGLAHGLQSE-----LMSFAPGGGHRPETLEASKPNDAALLGRGVR 170

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +   + D       +    + + +   E   E      +     +   A    PV     
Sbjct: 171 MRSLFQDSV----RNSQSTVAYATWLSELGGEIRTAPDLPTRMMIFDGATAVIPVSSEDS 226

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
             G V+ T    + A   + E   A  + +    E  +        L+ +E + ++L   
Sbjct: 227 AAGAVVLTGHGTLTALCALFENVWAGARTLGTSEERDEG------GLSSQERTVIRLLAQ 280

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T E IA++L +S  T          +LDA +R +   +A++ G++
Sbjct: 281 GLTDEAIAKRLAVSPRTARRLANGLMERLDAASRFEFGVRAVQRGWL 327


>gi|16077609|ref|NP_388423.1| two-component response regulator YdfH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308372|ref|ZP_03590219.1| hypothetical protein Bsubs1_03053 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312693|ref|ZP_03594498.1| hypothetical protein BsubsN3_03024 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317617|ref|ZP_03598911.1| hypothetical protein BsubsJ_02988 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321893|ref|ZP_03603187.1| hypothetical protein BsubsS_03059 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314195|ref|YP_004206482.1| two-component response regulator YdfH [Bacillus subtilis BSn5]
 gi|68566110|sp|P96686|YDFI_BACSU RecName: Full=Transcriptional regulatory protein ydfI
 gi|1881349|dbj|BAA19376.1| ydfI [Bacillus subtilis]
 gi|2632842|emb|CAB12349.1| two-component response regulator [YdfH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320020469|gb|ADV95455.1| two-component response regulator (YdfH) [Bacillus subtilis BSn5]
          Length = 213

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTE+E   L+    G  S+ IA  LG+S  TV + L S   KL A +R +A+  A++ G
Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKG 207

Query: 233 YI 234
            +
Sbjct: 208 IL 209


>gi|158318878|ref|YP_001511386.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114283|gb|ABW16480.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 225

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 43/145 (29%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
                +  +                 AG +  V      +               +    
Sbjct: 72  AEADWDVRVLILTTFDPDEYVYQALRAGASAFVLKDIPADQLAGAVRTVADGGALLAPSI 131

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                   T+   +    S     LT+RE   +     G ++ EIA++L +   TV +++
Sbjct: 132 TRRLIGRFTERRAVGSAPSRRVERLTDRERDVVVAVARGSSNSEIAQELFIGPATVKSHV 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   KL   +R Q +  A   G +
Sbjct: 192 SSILTKLGLRDRTQVVVFAYESGLV 216


>gi|303327531|ref|ZP_07357972.1| DNA-binding response regulator, LuxR family [Desulfovibrio sp.
           3_1_syn3]
 gi|302862471|gb|EFL85404.1| DNA-binding response regulator, LuxR family [Desulfovibrio sp.
           3_1_syn3]
          Length = 226

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +           S     L+ RE    +L  DG + + IA+ L +S  TV  +  +
Sbjct: 142 LAELLRRRRDAAEHGGSGDLSALSPREKEIFRLLADGKSVKSIAQDLCISPKTVETHKYN 201

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A +    +  AIR G +
Sbjct: 202 LLTKLQAGSVGDLVKIAIRHGLV 224


>gi|255038247|ref|YP_003088868.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254951003|gb|ACT95703.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 205

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L  +G T+ +IAE+L +SV TVN++  +  +K +  N    I  A   G 
Sbjct: 145 LTRREKEVLVLIAEGLTNPQIAEQLFISVTTVNSHRQNLLIKFEVSNTASLIKLAAGLGL 204

Query: 234 I 234
           I
Sbjct: 205 I 205


>gi|254492498|ref|ZP_05105670.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxidans DMS010]
 gi|224462390|gb|EEF78667.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxydans DMS010]
          Length = 215

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               ++ +       +         L+ RE   L L   GYTS+EIA+ L LS +TV  Y
Sbjct: 130 IARYLLNELSIAEPAKPEQKNSPDVLSPREKEVLLLVSKGYTSKEIAKMLDLSYYTVREY 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL   N++QA+++A   G I
Sbjct: 190 VSNVYKKLSVKNKMQAVSEATLLGII 215


>gi|159037948|ref|YP_001537201.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916783|gb|ABV98210.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 230

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                  +     +     +     LT RE   L     G ++ EIA+ L +S  TV  +
Sbjct: 141 LDRFLDHLAELLPDPAAGPTRLLDPLTGREREVLIQVARGRSNAEIAQALSVSETTVKTH 200

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G    KL   +R+QA+  A   G I
Sbjct: 201 VGHVLTKLRLRDRVQAVVLAYESGLI 226


>gi|24374816|ref|NP_718859.1| LuxR family DNA-binding response regulator [Shewanella oneidensis
           MR-1]
 gi|24349500|gb|AAN56303.1|AE015768_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis
           MR-1]
          Length = 206

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + LT  +   L L   G++++ IA+ L +S  TV A++ +   KLD  NR QA   
Sbjct: 147 KTLTPSQFRVLHLIAAGHSNKTIADSLNISEKTVKAHISAIFEKLDVKNRTQAALL 202


>gi|330810227|ref|YP_004354689.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378335|gb|AEA69685.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 494

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L  +G   +EIA +L L+ +TV  ++ +   KLD  +R +AI  A   G
Sbjct: 424 ELTARERDVLGLICEGLADKEIAARLKLAPNTVRNHVATLYSKLDVHSRSEAIVWARERG 483

Query: 233 Y 233
            
Sbjct: 484 L 484


>gi|320536217|ref|ZP_08036263.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
 gi|320146919|gb|EFW38489.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
          Length = 201

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +L ERE   L+L  DG  ++EIA++L LS  T+  Y+ S   KL   +R Q +  
Sbjct: 142 EDLNEREADILELIADGLNNKEIAQRLYLSEGTIRNYVSSILEKLALRDRTQLVVY 197


>gi|319793774|ref|YP_004155414.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596237|gb|ADU37303.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 264

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +      +       +   +       L+ RE   L+L   GY +EEIA +L +S  TV
Sbjct: 176 RLARRLLVHLDHQRSNQSPVRPPETKAALSAREREVLRLVATGYVTEEIALQLTISAQTV 235

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           NA++ +   KL A  R QA++ A   G +
Sbjct: 236 NAHVKNIYRKLHAHTRAQAVSFASHRGLL 264


>gi|311106149|ref|YP_003979002.1| transcriptional regulator DegU [Achromobacter xylosoxidans A8]
 gi|310760838|gb|ADP16287.1| transcriptional regulatory protein DegU [Achromobacter xylosoxidans
           A8]
          Length = 223

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           Q            S+    LT RET  +Q    G +++ IA +L +S  TV  ++ +   
Sbjct: 141 QASLAAQAPQAAGSAERHRLTARETQIVQWLARGASNKVIARELDVSESTVKIHVQNVLK 200

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL+  +R+Q    A+  G 
Sbjct: 201 KLNLTSRVQVAVYAVEHGL 219


>gi|312199045|ref|YP_004019106.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311230381|gb|ADP83236.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 222

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L   V   A G      +    L  + R+     L++RE   LQL
Sbjct: 107 AGATGYLLKDAARDDLLRAVRAAARGEAVLAPSVAATLMNRVRTPETGPLSQRELEVLQL 166

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T+  +A +L ++  TV  +L +   KL   +R  A+A+A   G +
Sbjct: 167 VAAGATNRVVAAQLFVTEATVKTHLLNIYAKLGVNDRAAAVAEAFGRGLL 216


>gi|307700360|ref|ZP_07637400.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614571|gb|EFN93800.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 217

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   ++L  +   +++IA +L +SV TV  ++ S   KL   NR   +AKA R G 
Sbjct: 156 LSERELQVVRLVAEALENKQIASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGL 215

Query: 234 I 234
           +
Sbjct: 216 L 216


>gi|302532515|ref|ZP_07284857.1| two-component system regulator [Streptomyces sp. C]
 gi|302441410|gb|EFL13226.1| two-component system regulator [Streptomyces sp. C]
          Length = 259

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +  +   E           LT RE   L+L   G  ++EIA +L ++  TV  +L 
Sbjct: 166 RRLIEAYSARTEGPGGDDRTLSRLTNREQDVLRLVARGLGNDEIAAELVVTEATVKTHLH 225

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R QA+A A   G +
Sbjct: 226 RTMTKLGLRSRAQAVAVAYEAGLV 249


>gi|290957194|ref|YP_003488376.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260646720|emb|CBG69817.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 1089

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 8/165 (4%)

Query: 77   LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG---LLPFAGIAFPVRLGFHKNGYVI 133
            L        P  W  +              R+       L   G     R    +   + 
Sbjct: 913  LRRAEGLSDPDTWSDVVTAFEPLERPYDLARVRHRLAEALLARGTDDEARDRATELLRLA 972

Query: 134  FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDG 188
                  + A  +         +         +   + A       LT RE   L+L   G
Sbjct: 973  AAVADHLGARPLADAVALLARRARLTLSRAPEPALAPADPVAALGLTGREHDVLRLVAVG 1032

Query: 189  YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             T+ +IAE+L +S  T + ++ +   KL    R +A A A R G 
Sbjct: 1033 RTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRVGL 1077


>gi|227329494|ref|ZP_03833518.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
              L    +    I   V         ++            A E +++A           
Sbjct: 71  LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDAIRNGDAFSEQV 130

Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            ++ + R       S    LTERE   LQ    G ++++IA  L +S  TV  ++ +   
Sbjct: 131 RDVLRHRIAIQDTPSPFTVLTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLR 190

Query: 215 KLDAVNRIQAIAK 227
           KL+  +R+ A   
Sbjct: 191 KLNVRSRVAATVL 203


>gi|167644589|ref|YP_001682252.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167347019|gb|ABZ69754.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 212

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
           +AG A  +R         +  S       + I   H     + ++         +    L
Sbjct: 92  YAGDAQALRALKAGATGYLLKSTLRRELLDTIRNVHAGRRHLQSEVAH-EIAIHAIDEAL 150

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +ERE   L+L   G  +++IA +L LS  TV A+L S   KLD  +R  A+  A R G I
Sbjct: 151 SEREAHVLRLVAAGRANKQIAWELSLSEDTVKAHLKSIFAKLDVADRTHAVTIAARRGII 210


>gi|148260734|ref|YP_001234861.1| response regulator receiver protein [Acidiphilium cryptum JF-5]
 gi|146402415|gb|ABQ30942.1| response regulator receiver protein [Acidiphilium cryptum JF-5]
          Length = 267

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 161 LELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           L L  +    +        LT R+         G  ++ IA +LG+S  TV  ++ +   
Sbjct: 181 LLLDDRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMR 240

Query: 215 KLDAVNRIQAIAKA 228
           K+ A NR QA+ KA
Sbjct: 241 KIGATNRTQAVYKA 254


>gi|84393114|ref|ZP_00991879.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84376271|gb|EAP93154.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 212

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G +S+EIA+ L +S  TV  +  +   KLD  +  +    A+  G
Sbjct: 150 PLSRREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVNSG 209

Query: 233 YI 234
            +
Sbjct: 210 LV 211


>gi|326403930|ref|YP_004284012.1| LuxR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050792|dbj|BAJ81130.1| LuxR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 319

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 161 LELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           L L  +    +        LT R+         G  ++ IA +LG+S  TV  ++ +   
Sbjct: 233 LLLDDRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMR 292

Query: 215 KLDAVNRIQAIAKA 228
           K+ A NR QA+ KA
Sbjct: 293 KIGATNRTQAVYKA 306


>gi|302387016|ref|YP_003822838.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
 gi|302197644|gb|ADL05215.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
          Length = 213

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 33/65 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RET  L L   G T  EIAE+L LSV  +  +L S   KL+  N+I A+ KA 
Sbjct: 149 PDIPLTGRETQVLTLLAQGLTQREIAEELFLSVSCIKKHLASIYSKLNVNNKISAVQKAR 208

Query: 230 RFGYI 234
               +
Sbjct: 209 ESNIL 213


>gi|259048250|ref|ZP_05738651.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035099|gb|EEW36354.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 216

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +   +    LT RE   +     G +++EIA+ L LS  TV   + +   KL+  +R Q
Sbjct: 145 EESFDAEKWGLTTREVELIAQVAKGLSNKEIAQTLFLSEGTVKNNISTILSKLELRDRTQ 204

Query: 224 AIAKAIRFGY 233
            +  A     
Sbjct: 205 LVIFAYENKL 214


>gi|238060903|ref|ZP_04605612.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237882714|gb|EEP71542.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 223

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                R + A  LT+RET  L+L   G + ++IAE+LGLS  TV  ++ +   KL   NR
Sbjct: 150 AATAGRDTDAPRLTDRETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNR 209

Query: 222 IQAIAKAIRFGY 233
           ++    AI  G 
Sbjct: 210 VELTRYAIERGL 221


>gi|192359370|ref|YP_001983632.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190685535|gb|ACE83213.1| response regulator [Cellvibrio japonicus Ueda107]
          Length = 225

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 20/206 (9%)

Query: 43  DFPRRQQLICELHNYD-----LDSGDIPNILIETYGDDFLFHFNSGLLP----IIWQSIQ 93
           D P R++    L ++           +   L   +            LP    I    + 
Sbjct: 24  DTPLRERFARILGDWPGGELVAACATLSEALDRLHRQPVDLLMADLNLPDGHGIEAIQLL 83

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---NEVIIEAH 150
                E+   +   L         I           GY++  ++ L L     E+     
Sbjct: 84  RRLYPEADAMVISALADDETVLGAI------EAGAVGYLLKDADSLELVEAIQELRAGRS 137

Query: 151 GACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                +    +      +       LT RET  L+    G+T  E+AE LG+S HTV  +
Sbjct: 138 PISSSIARILVRRMGGSTPATPTPELTPRETEILRGIAKGFTYTELAEWLGISRHTVPVH 197

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL A NR +A+ +A + G I
Sbjct: 198 IKNIYRKLAANNRSEAVYEASKRGLI 223


>gi|170077264|ref|YP_001733902.1| LuxR family transcriptional regulator [Synechococcus sp. PCC 7002]
 gi|169884933|gb|ACA98646.1| transcriptional regulator protein, LuxR family [Synechococcus sp.
           PCC 7002]
          Length = 91

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  +++++   L+ERE   + L   G T+ EIA +L +S  TV+ ++ +   K    NR+
Sbjct: 1   MATEKTASEAALSEREIEIVDLVAAGLTNHEIAARLDISKRTVDNHISNILTKTATDNRV 60

Query: 223 QAIAKAIRFGYIC 235
             +  A+++G +C
Sbjct: 61  SLVRWALQWGKVC 73


>gi|89893086|ref|YP_516573.1| hypothetical protein DSY0340 [Desulfitobacterium hafniense Y51]
 gi|89332534|dbj|BAE82129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE + L L   GY+++EIAE+L +SV TV +Y      KL+   R + +  A++ G 
Sbjct: 171 LTVREQNFLSLMAMGYSNKEIAEELSVSVKTVESYRSKIKDKLNLKTRHELVRYALKKGL 230


>gi|297161212|gb|ADI10924.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    LT RE   L     G +++EIA +L +S  TV  ++  A  KL A +R Q +  
Sbjct: 156 AARLDALTGREREVLVQVAGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 215

Query: 228 AIRFGYI 234
           +   G +
Sbjct: 216 SYETGLV 222


>gi|126739864|ref|ZP_01755555.1| transcriptional regulator, LuxR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126719096|gb|EBA15807.1| transcriptional regulator, LuxR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 245

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 75/241 (31%), Gaps = 17/241 (7%)

Query: 9   KKSSSLQEL------SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62
           +   SL +L        R    ++  +     + +I  A      + +     N      
Sbjct: 5   QLIDSLDKLLAQGPGQDRWMAAEDIAEQLG--VKSILVAEAHSSMKAISWLSTNMPGHWM 62

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
           +          D F+     G   +++          ++    ++  +     F  +   
Sbjct: 63  EEYIAEEYVKDDPFVEGLAGGPGSMLFHCGQVRRDEAKTRKAWTLSHQLKNTGFGTLYCT 122

Query: 122 VRLGFHKNG-YVIFTSEFLMLANEVI------IEAHGACYQVITDFLELFKK-RSSAARN 173
                   G +V    E        +      + A      + ++     K+ R+     
Sbjct: 123 RFGKDGDFGKFVTLGFEETATDKPQLDMTGKDLLAALLSTTISSESAPKAKQYRTLQKDI 182

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ R+   L L  +G  +  IAE LG+S   V+ +   A   L A  R  A+A A+  G 
Sbjct: 183 LSTRQREVLSLLAEGMMTARIAETLGISEVAVSQHFAKARKALGANTREHALALAMSLGL 242

Query: 234 I 234
           I
Sbjct: 243 I 243


>gi|116072236|ref|ZP_01469503.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116064758|gb|EAU70517.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 227

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE+  L+    G +++E+AE L +S  T+ +++ +   KL   +R QA+  AIR G
Sbjct: 167 GLSDRESEVLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAG 226

Query: 233 Y 233
            
Sbjct: 227 M 227


>gi|78047743|ref|YP_363918.1| two-component system LuxR family regulatory protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78036173|emb|CAJ23864.1| two-component system regulatory protein, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 213

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L L   G ++++I   L +S  TV A++ +   KL   +R  A+  A+R 
Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRR 206

Query: 232 GYI 234
           G +
Sbjct: 207 GIL 209


>gi|269837258|ref|YP_003319486.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786521|gb|ACZ38664.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 549

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 1/115 (0%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
             + L   + G        L  A     +   A      + L      +  A  LT RE 
Sbjct: 432 VLIALACRELGDEETARIELDAARWSFSQLGAAPDVARVEALSRTHPTAPTA-GLTAREV 490

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L  +G T+  IAE L +S  TV  ++ +   KLD  +R  A A A   G +
Sbjct: 491 EVLRLVAEGKTNRAIAEDLFISEKTVARHISNIFTKLDLSSRAAATAYAYEHGIV 545


>gi|223934123|ref|ZP_03626068.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|302024316|ref|ZP_07249527.1| response regulator protein [Streptococcus suis 05HAS68]
 gi|330833306|ref|YP_004402131.1| two component LuxR family transcriptional regulator [Streptococcus
           suis ST3]
 gi|223897209|gb|EEF63625.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|329307529|gb|AEB81945.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis ST3]
          Length = 200

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     +    LT  E+  L+L  +G +++EIA +L LS  TV  Y+ S   KL A NR
Sbjct: 127 ELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENR 186

Query: 222 IQAIAKAIRFGYI 234
             A+  A   G++
Sbjct: 187 TAAVRIAQEKGWL 199


>gi|149190820|ref|ZP_01869085.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148835382|gb|EDL52354.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 211

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + +  L+ RE S L+L   G +S++IA+ L +S  TV  +  +   KLD  +  +    A
Sbjct: 146 AKSNPLSRREESVLKLVAQGCSSKKIAQMLDISYRTVETHRQNIKHKLDLHSTAELAKYA 205

Query: 229 IRFGY 233
           +  G 
Sbjct: 206 LENGL 210


>gi|327450891|gb|EGE97545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|328754312|gb|EGF67928.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
          Length = 237

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------SAARNLT 175
           L    +G+++  ++   L   +   A G           +  +          S A  LT
Sbjct: 92  LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            RE    +L   G ++ EIAE+L +S  TV  ++ +  +K D  +R+Q +A  +R G
Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALVLRVG 208


>gi|325929180|ref|ZP_08190322.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325540465|gb|EGD12065.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 213

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L L   G ++++I   L +S  TV A++ +   KL   +R  A+  A+R 
Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRR 206

Query: 232 GYI 234
           G +
Sbjct: 207 GIL 209


>gi|300788286|ref|YP_003768577.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299797800|gb|ADJ48175.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 195

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
            E      ++          +   VR G          +    L       AH    ++I
Sbjct: 53  PECPSSSLLQEAVEAGVRGFV---VRDGPIDETLRAIRAVHAGLPWFDSSVAHRL-LRLI 108

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            D  +     +      T RE   ++   +G ++ EIA ++ ++  TV  ++     KL 
Sbjct: 109 ADRRQGGGWSAFKDDPFTPREREVVECLAEGMSNTEIAARMSMAQRTVKYHVSHVLAKLG 168

Query: 218 AVNRIQAIAKAIRFGY 233
           A +R  A+A A   G+
Sbjct: 169 ARDRAHAVALAYGSGF 184


>gi|229065002|ref|ZP_04200300.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716303|gb|EEL68015.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 189

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NR
Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176

Query: 222 IQAIAKAIRFGYI 234
           I+AI  A   G+I
Sbjct: 177 IEAITIAEEKGWI 189


>gi|126739386|ref|ZP_01755079.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126719486|gb|EBA16195.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 203

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 33/74 (44%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             E        A  L+ RE   L+    G +++EIA +L L   T+  ++ +   KLDA 
Sbjct: 129 MREEEATDHPLAEKLSPRELEVLESLCKGLSNKEIARELDLQEVTIKLHVRTLCRKLDAK 188

Query: 220 NRIQAIAKAIRFGY 233
           NR QA   A   G 
Sbjct: 189 NRTQAALTAKEAGL 202


>gi|119717344|ref|YP_924309.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538005|gb|ABL82622.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 212

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG------FHKNGYVIFTSEFLMLANEV 145
              +    +   ++  + G       +   +  G        + G   F  +       V
Sbjct: 53  ADLQLPDGTGLDIARAVRGENDSTGLVVLTMHSGDDQIFAAMEAGASGFVGKEAPAQEVV 112

Query: 146 IIEAHGACY---QVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
               H A      V +   E   +R  A    L++RE   L L  +G  +  IAE+L +S
Sbjct: 113 RTIRHAAVSPRSFVCSGLAEAMVRRVGAGTARLSDREHDVLLLLAEGLGTAAIAERLFMS 172

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             T  ++LG    KL A NR QA+  A+R G +
Sbjct: 173 ESTAKSHLGHIYQKLGAANRAQALVTAMRIGLL 205


>gi|320334053|ref|YP_004170764.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755342|gb|ADV67099.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 225

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEI 194
            + ++              +V+ D L   ++  +     LT RET  L L   G  ++ I
Sbjct: 124 RDTIVRVARGERYVQPRVAEVLADALSRERRGVTVTPERLTPRETEILALIARGLANKRI 183

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A+ L L+  TV  ++ +   KL A +R+ A+  A   G +
Sbjct: 184 AQALTLTEGTVKVHVSNILGKLGATDRLDAVRVAREAGLL 223


>gi|258624779|ref|ZP_05719710.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM603]
 gi|262173878|ref|ZP_06041555.1| transcriptional regulatory protein UhpA [Vibrio mimicus MB-451]
 gi|258582941|gb|EEW07759.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM603]
 gi|261891236|gb|EEY37223.1| transcriptional regulatory protein UhpA [Vibrio mimicus MB-451]
          Length = 208

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 15/169 (8%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +   P+    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALT-HSPVDVAIIDISMPDENGLSLLERLRQHNPNFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + S+    +        V       C   + +        ++   +LT+RE     L 
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLVDLTKREVEVFDLL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G   ++IA+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 157 VQGQDVKDIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFALQHHLL 205


>gi|229087841|ref|ZP_04219955.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228695477|gb|EEL48348.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 189

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NR
Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176

Query: 222 IQAIAKAIRFGYI 234
           I+AI  A   G+I
Sbjct: 177 IEAITIAEEKGWI 189


>gi|229821508|ref|YP_002883034.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567421|gb|ACQ81272.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 225

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
                  +G              V   +    L +  +  A     + +          S
Sbjct: 99  AALAAGASGFLLKTSRPDQLAAAVRSVAAGDALLSPEVTRA--VIERAVAREAGPPPAPS 156

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            AA+ LTERE   L+L   G  ++EIA +L +   TV  ++ +   KL   +R+QA+A A
Sbjct: 157 PAAQALTERELVVLRLLARGLNNDEIAAELVVGRATVKTHVSNVLAKLQLRDRVQAVAYA 216

Query: 229 IRFGY 233
            R G 
Sbjct: 217 YRHGL 221


>gi|66044246|ref|YP_234087.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63254953|gb|AAY36049.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 920

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLEL 163
                 LL     + P   G     +     E     +E +++         ++      
Sbjct: 789 RDEARALLLR---SLPAASGGALMPFNALLGEHPEWLHEQLVQLPPCRVQAALLEKLPAC 845

Query: 164 FKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                 AA     L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    
Sbjct: 846 CTPSPEAAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVER 905

Query: 221 RIQAIAKAIRFGYI 234
           R QA+A+A   G +
Sbjct: 906 RTQAVARAKTLGLL 919


>gi|288556565|ref|YP_003428500.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547725|gb|ADC51608.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+   ++     ++    +T RE + ++L G+G +++EI+E+L LSV T+  ++ 
Sbjct: 128 HVAAKVMPRLMK-KTNDAAVDPAITPRELAIMKLVGEGLSNKEISEELSLSVGTIKNHIS 186

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R Q    AIR   +
Sbjct: 187 AILDKLSLRDRTQLAIYAIRHNVV 210


>gi|239978487|ref|ZP_04701011.1| two component system response regulator [Streptomyces albus J1074]
 gi|291450385|ref|ZP_06589775.1| two component system response regulator [Streptomyces albus J1074]
 gi|291353334|gb|EFE80236.1| two component system response regulator [Streptomyces albus J1074]
          Length = 222

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L+L   G T++ IA  L +S  T   ++     KL   +R Q +  A
Sbjct: 150 PRLNALTDREREVLRLVAGGLTNDRIAATLVVSPATAKTHVSRVMTKLGVRDRSQLVVLA 209

Query: 229 IRFGYI 234
              G +
Sbjct: 210 YESGLV 215


>gi|218129935|ref|ZP_03458739.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697]
 gi|217988045|gb|EEC54370.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697]
          Length = 217

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             QV        + R      LT+RE   L+   +G  ++EIA+ L +S +TV+ +    
Sbjct: 134 AEQVRNQMRRSDEGRR---EELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHL 190

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KLDA N    I  AI  G I
Sbjct: 191 LDKLDAKNVADLIMTAISRGII 212


>gi|5834774|emb|CAA74720.1| response regulatory protein [Streptomyces reticuli]
          Length = 217

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 36/109 (33%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +  +  +    LT RE   L   
Sbjct: 108 AGATGYLLKAERAEDLFTAIQAAAQGRPALSPPVADRVMSRLRNPRPALTPREQDILAHL 167

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++  IA  L +S  TV  +L     KL    R  A+A A     +
Sbjct: 168 SRGLSNHAIARALYISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 216


>gi|320333728|ref|YP_004170439.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755017|gb|ADV66774.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +     +    +      +LT +E   LQL   G+ + EIA++LG++  TV  ++ 
Sbjct: 125 RLHPEAARRLVR-DFRSPDMREHLTPKEVLTLQLIARGHANREIAQELGITEATVKTHVS 183

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               KL   +R QA   A++ G 
Sbjct: 184 RLLGKLGLTSRTQAALYALKAGL 206


>gi|320106469|ref|YP_004182059.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924990|gb|ADV82065.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 145 VIIEAHGAC--YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +I   H     ++ +   +           NL++RE   LQL   G ++ EIAE+L +  
Sbjct: 117 LIRAMHRVHTGHRFLPQVISEALSSRVPGSNLSQREQEVLQLLFAGKSNREIAEELQIKE 176

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  ++    ++L+  +R QA+ + ++ G +
Sbjct: 177 TTVKTHVSVILMRLNVEDRTQAVVEGLKRGLV 208


>gi|262165533|ref|ZP_06033270.1| DNA-binding response regulator LuxR family [Vibrio mimicus VM223]
 gi|262171689|ref|ZP_06039367.1| DNA-binding response regulator LuxR family [Vibrio mimicus MB-451]
 gi|261892765|gb|EEY38751.1| DNA-binding response regulator LuxR family [Vibrio mimicus MB-451]
 gi|262025249|gb|EEY43917.1| DNA-binding response regulator LuxR family [Vibrio mimicus VM223]
          Length = 212

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 150 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 209

Query: 233 YI 234
            +
Sbjct: 210 LL 211


>gi|259418943|ref|ZP_05742860.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
 gi|259345165|gb|EEW57019.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 12/159 (7%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-----PVRL--GFHKNGYVIFTSEF 138
           P     +       +      R         G+A      P R        G + F  + 
Sbjct: 56  PFDLVLLDYNMPGMNGLDGLQRALKANGGR-GVAILSGSAPTRTAQDALDAGAIGFIPKT 114

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL----TERETSCLQLAGDGYTSEEI 194
           +   + +      +  ++      + ++ S+ A  L    + RE   L     G +++EI
Sbjct: 115 MGAQSLLNAVRFMSAGEIYVPVELMREEASAPAHPLLAQLSPREVEVLSGLCRGQSNKEI 174

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A  L L   T+  ++ +   KLDA NR QA   A   G 
Sbjct: 175 ARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGL 213


>gi|254425578|ref|ZP_05039295.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188001|gb|EDX82966.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 209

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 37/68 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R   A  L+ RE   LQL  +G T+ +I+ +L ++  TV  ++G    KL   +R QAI 
Sbjct: 140 RRMGAPTLSTREQEVLQLIAEGKTNLQISAELTIAASTVRFHVGHILDKLGVSDRTQAIV 199

Query: 227 KAIRFGYI 234
           +A+  G +
Sbjct: 200 QAVNQGIV 207


>gi|114769502|ref|ZP_01447128.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550419|gb|EAU53300.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
          Length = 222

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 49/94 (52%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           F ++   +   +      A  +++  F+++ + +      LT+RE   LQ   DG +++E
Sbjct: 108 FCNDEQTVDELLETAITVASGKMVFPFMDVRELQDDPLFMLTKREKIILQFLADGSSNKE 167

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +AE + +S++TV  +L +   KL   NR QAI+ 
Sbjct: 168 LAESMKISINTVKFHLSNLYEKLGVKNRSQAISF 201


>gi|110681357|ref|YP_684364.1| nitrate/nitrite response regulator protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109457473|gb|ABG33678.1| nitrate/nitrite response regulator protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++  +L++ + ++     L+ +E   L    +G T+++++ +L +S +TV  +L +   
Sbjct: 128 KMVFPYLDIREIKTDPIETLSRKEREILDALAEGLTNKQLSARLEISTNTVKFHLSNIFD 187

Query: 215 KLDAVNRIQAIA-----KAIR 230
           KL   NR QAIA     KA R
Sbjct: 188 KLSVRNRTQAIAHYYASKARR 208


>gi|302558898|ref|ZP_07311240.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302476516|gb|EFL39609.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 237

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 119 IRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 178

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 179 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 237


>gi|327193774|gb|EGE60651.1| two-component response regulator protein [Rhizobium etli CNPAF512]
          Length = 223

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166
           +         I+  V  G         ++E ++ A E + +        V    +   ++
Sbjct: 85  MLSMHDSREYISSSVMRGAAGYVLKDVSTEEIVAAIETVADGGTYFSSGVFDALM--GER 142

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               +  LT RE   L L   G ++ EIAE LG+S  T   +  +   KL        I 
Sbjct: 143 AEEGSDPLTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIR 202

Query: 227 KAIRFGY 233
            A+  G 
Sbjct: 203 YALDHGI 209


>gi|317128969|ref|YP_004095251.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315473917|gb|ADU30520.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 199

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              NGY++  S    LAN +     G          EL  +  S +  LTERE   L   
Sbjct: 94  AGVNGYMLKDSPSDELANAIRSVMAGRRIYA----SELVDEVYSESNPLTEREREVLVHM 149

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG +++EIA  L L+  TV  Y+ +   KL+  NRI+AI K    G+
Sbjct: 150 ADGKSTKEIANILHLTNGTVRNYISTILDKLEVGNRIEAITKVKEKGW 197


>gi|302869871|ref|YP_003838508.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|315501333|ref|YP_004080220.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302572730|gb|ADL48932.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|315407952|gb|ADU06069.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 272

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 5/153 (3%)

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
                 +  + ++   +    + +        P  G      +       V+        
Sbjct: 124 RSNRHRVADTARDAAAVGGPTRPAAPGRTQGGP--GWPATAPVDAAGLPTVVPVQRGEDP 181

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            +    +             +   +   +A  LTERE   L    +G ++ EI  +L +S
Sbjct: 182 DDPAAADG---AEAPRPGAAQRPARSPRSAIGLTERELQVLLGMAEGKSNAEIGRELFVS 238

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  +      KL A +R  A+A   R G +
Sbjct: 239 EDTVKTHARRLFRKLGARDRAHAVAAGFRAGLV 271


>gi|239906985|ref|YP_002953726.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239796851|dbj|BAH75840.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 226

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 9/121 (7%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD--FLELFK-------KRSSAARN 173
           R G          +  L+ A E ++         IT    L L +        R  A  +
Sbjct: 99  RAGAMGYVVKDSAATSLVAAIEAVLRGERYLDAAITPQVLLRLDEYAARKTGPRDPAYDS 158

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G +   IA +L +S  TV  +  +   KL   N  + +  A R G 
Sbjct: 159 LTRREQQILRLLAEGRSVAAIATELFISKKTVENHRANICGKLGLANLAELVRYAARLGI 218

Query: 234 I 234
           +
Sbjct: 219 V 219


>gi|237711747|ref|ZP_04542228.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|229454442|gb|EEO60163.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 262

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +LT RE   L+L   G+ S+EIA+KL +S+HTV+ +  +   KL   N ++AI    
Sbjct: 197 PVVSLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVHNSLEAIRLGQ 256

Query: 230 RFGYI 234
             G +
Sbjct: 257 ESGLL 261


>gi|254297002|ref|ZP_04964455.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 406e]
 gi|157806917|gb|EDO84087.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 406e]
          Length = 225

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 156 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 215

Query: 232 GY 233
           G 
Sbjct: 216 GL 217


>gi|300088662|ref|YP_003759184.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528395|gb|ADJ26863.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 248

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 149 AHGACYQVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIAEKLG 199
                 +++    +L +    ++           L+ RE S L+L  DG T++EIA KL 
Sbjct: 153 LLYRAIRLLRLPTKLQEASDDSSEITSADIVVQQLSPREMSTLRLVSDGMTNKEIAMKLN 212

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            S   V  Y+     KL+  NR Q   KA +   I
Sbjct: 213 CSESAVKGYVTRIMNKLNVTNRTQIALKASQLNII 247


>gi|269961289|ref|ZP_06175655.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833955|gb|EEZ88048.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    + A  +LT RE   L+    G ++ ++AE+L +S  T+ ++L     KL   NR+
Sbjct: 143 ISTHTAPATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202

Query: 223 QAIAKA 228
           QAIA A
Sbjct: 203 QAIAWA 208


>gi|251789457|ref|YP_003004178.1| transcriptional regulator NarL [Dickeya zeae Ech1591]
 gi|247538078|gb|ACT06699.1| two component transcriptional regulator, LuxR family [Dickeya zeae
           Ech1591]
          Length = 215

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 16/142 (11%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY----- 154
             RL    L    + F V                      M   ++++  H A       
Sbjct: 70  LARLRETSLSGRIVVFTVSNHEEDVISAFKGGADGYLLKDMEPEDLLVALHQAAAGKMVL 129

Query: 155 ------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                  +     E     +   + LT RE   L+L   G  ++ IA KL ++  TV  +
Sbjct: 130 SDTLTPVLAASLRETRSSDTRDIQQLTPREKDILKLIAQGLPNKVIARKLTITESTVKVH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIR 230
           +     K+   +R++A    ++
Sbjct: 190 VKHLLKKMKLRSRVEAAVWVVQ 211


>gi|228990612|ref|ZP_04150577.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           pseudomycoides DSM 12442]
 gi|228769138|gb|EEM17736.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           pseudomycoides DSM 12442]
          Length = 55

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  ++EI EKL +S+ TV  ++ +   KL   NR++AI KA+  G I
Sbjct: 5   LATGAINKEIGEKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLI 54


>gi|229187578|ref|ZP_04314718.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228595945|gb|EEK53625.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 189

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|156975940|ref|YP_001446847.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116]
 gi|156527534|gb|ABU72620.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    + A  +LT RE   L+    G ++ ++AE+L +S  T+ ++L     KL   NR+
Sbjct: 143 ISTHTAPATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202

Query: 223 QAIAKA 228
           QAIA A
Sbjct: 203 QAIAWA 208


>gi|153834026|ref|ZP_01986693.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
 gi|148869670|gb|EDL68656.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    + A  +LT RE   L+    G ++ ++AE+L +S  T+ ++L     KL   NR+
Sbjct: 143 ISTHTAPATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202

Query: 223 QAIAKA 228
           QAIA A
Sbjct: 203 QAIAWA 208


>gi|317476127|ref|ZP_07935379.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907765|gb|EFV29467.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 255

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G  S+EIA+ L +S++TVN++  +   KL A N  +AI  A R 
Sbjct: 190 EPLTNRELEVLRLMKQGLLSKEIADTLQISINTVNSHRQNILQKLKANNSAEAINFAQRL 249


>gi|304406148|ref|ZP_07387805.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344732|gb|EFM10569.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 221

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF------KKRSSAARNLT 175
               +G++   +    L   +     G      Q++               ++    ++ 
Sbjct: 94  DSGVSGFISKAATREQLITAIRCALRGEAVVPIQLLKQLRRSEVRFQQTDGKTVEEVSIN 153

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+E   L+    G +++EIA KL +S  TV   L     KL   +R +AI +A R G I
Sbjct: 154 EKEQLILREVASGGSNKEIAAKLYISQRTVEYNLTRIFEKLGVRSRSEAIVEANRLGLI 212


>gi|294626147|ref|ZP_06704754.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665211|ref|ZP_06730510.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599596|gb|EFF43726.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605034|gb|EFF48386.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 235

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      L  A +        H    V ++       N+ +        
Sbjct: 86  AAGDGHEAAWLMPPRPSDLREARVPIHALGTTHGMLCVAWSEGRPAPGNDDVQALQAFAL 145

Query: 155 QVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E  K  ++  R          L++RE   L L   G T+  +A +LG+S  TV
Sbjct: 146 LLPAMVAEPAKPVATRRRKLLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++     KL+  +R QA   A++ G 
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|226307167|ref|YP_002767127.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226186284|dbj|BAH34388.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 224

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   + L   G +++EIA +L +S  T   ++  A  KLD  +R Q +  A + G
Sbjct: 156 QLTPRELEVVTLVALGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCG 215

Query: 233 YI 234
            +
Sbjct: 216 VV 217


>gi|298247492|ref|ZP_06971297.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297550151|gb|EFH84017.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 886

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L L  +G ++ EIA +L LSV TV  +  +   KL   +R QA+A+A R 
Sbjct: 824 EPLSGRELEVLGLIAEGLSNSEIARRLVLSVGTVKVHTRNIYGKLSVSSRTQALAQATRL 883

Query: 232 GY 233
             
Sbjct: 884 NL 885


>gi|271963284|ref|YP_003337480.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506459|gb|ACZ84737.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +A   LT RE   L L   G ++ EIA++L L+  TV  +LG    KL   +R Q +  A
Sbjct: 146 AALGGLTAREREVLVLVARGLSNMEIADRLDLAEATVKTHLGRVLAKLGLRDRAQVVVYA 205

Query: 229 IRFGYI 234
              G +
Sbjct: 206 YESGLV 211


>gi|256786173|ref|ZP_05524604.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289770068|ref|ZP_06529446.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700267|gb|EFD67696.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 226

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            ++       + +  +     A  +           R     +LT RE   L L G G +
Sbjct: 123 AILAAGAGQSVLDREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLS 182

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  IAEKL +S  TV  ++ +   K    +R  A+ +AI  G 
Sbjct: 183 NRGIAEKLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225


>gi|315500523|ref|YP_004089325.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
 gi|315418535|gb|ADU15174.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 218

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                 E  ++  +A  +LT RE   + L  +G T++EI   LG+S  TV A++     K
Sbjct: 136 AAMRAPEPVERDPTALSSLTGREREIVHLIAEGMTNKEIGRSLGISPATVKAHVERLIAK 195

Query: 216 LDAVNRIQAIAKAIRF 231
           L   +R QA   A R 
Sbjct: 196 LGVTDRTQAAVLASRH 211


>gi|284991375|ref|YP_003409929.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064620|gb|ADB75558.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 219

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 156 VITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           ++ + L    +        LT RE   ++L  +G +S EIA  L +S  TV  +  +   
Sbjct: 138 LMREHLHRAGRGEPVPERVLTAREAEVVKLIAEGCSSREIAALLVISTKTVERHRANILQ 197

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KLD  +R Q    AIR G +
Sbjct: 198 KLDMRDRTQLTRYAIRTGLL 217


>gi|319942139|ref|ZP_08016457.1| two-component system response regulator NarL [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804349|gb|EFW01233.1| two-component system response regulator NarL [Sutterella
           wadsworthensis 3_1_45B]
          Length = 226

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL---------------MLANEVIIEAHGACYQVITDFLE 162
           +   V          I                       + E  +    A  + +TD L 
Sbjct: 90  VILTVSDSGEDFFSCIRAGADGYFLKDMEPEKVLYCVRESLEGRLTVDPAMVRYLTDLLR 149

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
               +     +LT+RE   L     G T++ I  +L +S  TV  ++     KL   +R+
Sbjct: 150 GKAPKVEETVSLTDREEDVLSCIARGMTNKMIGRELKISDGTVKGHVKHLLKKLGFNSRV 209

Query: 223 QAIAKAIRF 231
           +A   A   
Sbjct: 210 EAAVWAAER 218


>gi|290955012|ref|YP_003486194.1| luxR family two-component response regulator [Streptomyces scabiei
           87.22]
 gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces
           scabiei 87.22]
          Length = 230

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAG 186
            G  + ++   + A + +++      +++    +    ++   A   LT RE   L L G
Sbjct: 118 RGSDLVSAVRTVAAGQSLLDPSATA-RLMARLRQGPQEEREPEALPGLTGREREILALIG 176

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +G T+ +I ++L L+  TV  ++     KL    R+QA   A + 
Sbjct: 177 EGLTNRQIGQRLFLAEKTVKNHISRLLAKLGVERRVQAAVIATQA 221


>gi|72162677|ref|YP_290334.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916409|gb|AAZ56311.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 217

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LTERE   L+ A  G ++ EIA++L LS  TV  ++     KL    R  AIA+
Sbjct: 154 GLTEREAEVLEAAARGLSNAEIAKELFLSEKTVKNHINRIFRKLGVRTRAAAIAR 208


>gi|260426271|ref|ZP_05780250.1| transcriptional regulatory protein DegU [Citreicella sp. SE45]
 gi|260420763|gb|EEX14014.1| transcriptional regulatory protein DegU [Citreicella sp. SE45]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L    +     LT RE   L     G +++E+A+ L +SV TV  +  +   KL   + 
Sbjct: 135 ALRPVMTGGREQLTNREQMVLLQLAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISST 194

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 195 AGLTRYALEHGVL 207


>gi|159036019|ref|YP_001535272.1| LuxR family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914854|gb|ABV96281.1| transcriptional regulator, LuxR family [Salinispora arenicola
           CNS-205]
          Length = 195

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 7/164 (4%)

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D       S   P      +   + ++     V         A ++           
Sbjct: 39  AAADTVGRAIRSCPQPYRTGDYRLLVLADAFDPADVSFALRAGVRAMLSIT-SEPEKLAA 97

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            V  T++        ++       +++   +      + +   LT R+T+ L L  DG+ 
Sbjct: 98  AVHATNQSEGRMPSEVL------LKLLHSRVAGNPVSTPSPSPLTPRQTAVLNLMADGHP 151

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  IA  L  S HTV   +    ++L   NR  A+A+AIR G I
Sbjct: 152 NVAIATALSCSEHTVKNVIYDMMMRLQVNNRAHAVARAIRAGLI 195


>gi|81428161|ref|YP_395161.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609803|emb|CAI54849.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 201

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L++RET  LQ   +G +++E+A +L LS  TV  Y+ +   KL A NRI+AI  A 
Sbjct: 137 PQNPLSQRETDVLQAVANGLSNKEVASQLFLSDGTVRNYMSTILSKLAASNRIEAIQIAR 196

Query: 230 RFGYI 234
             G++
Sbjct: 197 HNGWL 201


>gi|37521779|ref|NP_925156.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212777|dbj|BAC90151.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 224

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L L    +T+ EIAE+L +S  TV+++      KL   N    +  A+ +G 
Sbjct: 158 LTEREREILSLISQEFTNIEIAERLFISPRTVDSHRARLMQKLGTRNTAGLVRIAMEYGL 217

Query: 234 I 234
           +
Sbjct: 218 L 218


>gi|23006062|ref|ZP_00048562.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 195

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L     G ++EEIA  L LS  TV  ++     KL A +R Q +  A   
Sbjct: 127 EELTPREREVLVEVAGGLSNEEIAGSLFLSESTVKTHVSRVMAKLGARDRAQLVVAAYES 186

Query: 232 GYI 234
           G +
Sbjct: 187 GVV 189


>gi|326440343|ref|ZP_08215077.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            LM  ++ ++                       AR LTERE   L+L   G T+ EIAE+
Sbjct: 126 RLMARSDSLLFPAAVRSLAAEHGARRTAPVPPWARKLTEREADTLRLMAAGLTNGEIAER 185

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G+   TV +++ +   K  A +R QA+  A   G+I
Sbjct: 186 MGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 222


>gi|282856726|ref|ZP_06265990.1| two component transcriptional regulator, LuxR family
           [Pyramidobacter piscolens W5455]
 gi|282585422|gb|EFB90726.1| two component transcriptional regulator, LuxR family
           [Pyramidobacter piscolens W5455]
          Length = 215

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L     G+++ TS  + L  + +    G    + +         S+    L+ RE   L 
Sbjct: 94  LSAGARGFIVKTSAVMELT-QALQSVIGGGIYLDSAIANSVDSASNELEQLSPREREVLL 152

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+  G+  +E+A KL ++  TV A+L S   K  A N+ +A+  A++ G I
Sbjct: 153 LSSQGFPVKEVAAKLFITERTVQAHLSSVYAKFGAKNKTEALIIALKNGII 203


>gi|291612623|ref|YP_003522780.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582735|gb|ADE10393.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 215

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA---RNLTER 177
           L    +GY++       L  ++    +G       V    ++L K+  + +     LT R
Sbjct: 97  LNAGADGYLLKDQTDEQLIRDLHGILNGAPPLSPPVARRIMQLAKQTPATSLLLVPLTAR 156

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L     G +  EIA+ L +S HT+ A++ S   KLD  +R +A  +AIR G I
Sbjct: 157 EEEVLTYIAKGLSRTEIAQLLSVSAHTIIAHVRSIYSKLDISSRAEATVEAIRRGLI 213


>gi|239933481|ref|ZP_04690434.1| two component system DNA binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291441852|ref|ZP_06581242.1| two component system DNA binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291344747|gb|EFE71703.1| two component system DNA binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 211

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V   A G      T    L  +  +    LT RET  L L 
Sbjct: 101 AGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVADRLMNRLRTPDTALTRRETEVLALV 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG +++ +  +L L+  TV ++L     KL+  +R  A+A A   G I
Sbjct: 161 ADGLSNQAVGNRLHLTEGTVKSHLARIYAKLNVDSRTAAVATATDLGLI 209


>gi|145596350|ref|YP_001160647.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145305687|gb|ABP56269.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 268

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +    A  LTERE   L    +G ++ EI  +L +S  TV  +      KL A +R  A+
Sbjct: 199 REPRPAVGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAV 258

Query: 226 AKAIRFGYI 234
           A   R G +
Sbjct: 259 AAGFRAGLV 267


>gi|332881678|ref|ZP_08449326.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332680317|gb|EGJ53266.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 326

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              SA   L++RE   +     G +++EIAE+L +SV+TV  +  + + KL   +     
Sbjct: 251 GEDSANDALSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGLT 310

Query: 226 AKAIRFGYI 234
             AI  G I
Sbjct: 311 IYAIVNGLI 319


>gi|302555046|ref|ZP_07307388.1| luxR family two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472664|gb|EFL35757.1| luxR family two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 233

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +R     +      S   ML  E          + +          +    +L+ RE   
Sbjct: 117 IRGSDLVSAVRTVASGRSMLDPETTARL----MRSLRADPAEEPGLAPELASLSPREREI 172

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L L GDG T+ EI +KL LS  TV  ++     KL    R+QA   A + 
Sbjct: 173 LALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLASQL 222


>gi|284042986|ref|YP_003393326.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
 gi|283947207|gb|ADB49951.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
          Length = 873

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G   +++ +        +     L++RE + L+    G +  EIA +LG+S +TV  ++ 
Sbjct: 788 GFVAELLDERPAGTAAEAPGDSALSQRERAILRYLPSGLSKREIAGELGVSANTVKTHVS 847

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KLD  +R QA+A+A   G +
Sbjct: 848 SIYRKLDVRSRAQAVARARELGLL 871


>gi|300779752|ref|ZP_07089608.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533862|gb|EFK54921.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 220

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LT RE   L+L   GYT +EIA +L +SV TV  +  +   K    NR Q    A
Sbjct: 155 AVVDKLTRRELEVLRLLARGYTYKEIASELFISVKTVETHASNVLRKTQTSNRHQLTRWA 214

Query: 229 IRFGY 233
                
Sbjct: 215 SERAL 219


>gi|163754001|ref|ZP_02161124.1| two component transcriptional regulator, LuxR family protein
           [Kordia algicida OT-1]
 gi|161326215|gb|EDP97541.1| two component transcriptional regulator, LuxR family protein
           [Kordia algicida OT-1]
          Length = 216

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 39/80 (48%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++ + L + +  +     LT+RET  L     G    EIAE L +S  T+  ++ +   
Sbjct: 137 KLLRNPLTITEDEAIEKVKLTKRETDVLLQLSKGLNYNEIAENLFISSGTIRKHVENIYR 196

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   N+++A+ KA     I
Sbjct: 197 KLQVHNKMEAVQKAKSQKLI 216


>gi|170728075|ref|YP_001762101.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169813422|gb|ACA88006.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 206

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 140 MLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
            ++   +  A    +       + I+D L    +       LT RE + L+L   G  ++
Sbjct: 104 DISAAEMFYALRVIHNGGIYYSRAISDLLVQSSQEPDKNTVLTTREQTVLRLLASGLNNK 163

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E+A +L +SV T+  +  +   KL        +  AI  G 
Sbjct: 164 ELARELDISVRTIETHRRNIKDKLAIKTSAGLVRYAIDHGL 204


>gi|73541423|ref|YP_295943.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72118836|gb|AAZ61099.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 257

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 26/186 (13%)

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP---------VRLG 125
               H      P     +       +   L   L         +              L 
Sbjct: 71  PEEAHAQLVERPFDMVLVDSSLAHGNGIDLIGALHARDPRMPIVVISDPAAEADVMSALR 130

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS--SAA----- 171
              +GY++   +   L+  +                QV+   +      +    A     
Sbjct: 131 AGASGYLLKERDDTELSVSLRSALRGGMPIDPFIARQVLRSLVPADPHAACSPPAGCAGP 190

Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ RE   L+    G T+ EIA  L LS  T+ +++ +   KL    R QA  +A
Sbjct: 191 EARSPLSTRELEILRCIDRGATNREIAAALSLSTLTIESHVKNIHKKLGVKTRTQATFEA 250

Query: 229 IRFGYI 234
            R+G +
Sbjct: 251 RRYGLL 256


>gi|302872826|ref|YP_003841462.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575685|gb|ADL43476.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 216

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +NL+ERE    +L   GY++++I++ L +S  TV  Y+ +   KL+  NR Q    
Sbjct: 153 KNLSERELEIARLIAQGYSNKDISKMLFISEGTVRNYISTILEKLELKNRTQIAIY 208


>gi|258624459|ref|ZP_05719406.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|258583306|gb|EEW08108.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
          Length = 216

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213

Query: 233 YI 234
            +
Sbjct: 214 LL 215


>gi|111022468|ref|YP_705440.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821998|gb|ABG97282.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 211

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    L    +                    G++   S  
Sbjct: 51  DVALLDYRMPELDGSQVAAAVRRAELATRVLLLSAHDESAIVYHALQEGAAGFLPKESTR 110

Query: 139 LMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G         +    E+ ++       L+ RE   L L   G +   I
Sbjct: 111 AEIVKAVLDCAQGRDVLPASLAVGLAGEVRRRSEPVGPALSGREKEVLALIARGQSIPTI 170

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L L+  TV  ++     KL   +R  A+A+A+R G +
Sbjct: 171 AGELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRGLL 210


>gi|329938142|ref|ZP_08287593.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302631|gb|EGG46521.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 246

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 128 IRGGARGYVTKTITGSDLVASIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 187

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 188 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 246


>gi|295112119|emb|CBL28869.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Synergistetes bacterium SGP1]
          Length = 229

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++T F    K  +S   +L+ RE   L     G +++E+A+K  LS  TV  ++  
Sbjct: 129 VAGKLMTSFSR-RKNENSLLDDLSPREKVVLYWLSQGMSNQEVAQKTVLSEKTVKNHVSH 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+  +R QA   A + G+
Sbjct: 188 MLKKLELRDRTQAAILAWKLGF 209


>gi|229072819|ref|ZP_04206018.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228710310|gb|EEL62285.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|229112766|ref|ZP_04242298.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229153515|ref|ZP_04281693.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630119|gb|EEK86770.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228670600|gb|EEL25912.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|241666813|ref|YP_002984897.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862270|gb|ACS59935.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 210

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            +   L  +RS  A  L+ RE    +    G  +++IA  LG+S  TV  +      KL 
Sbjct: 126 AEHDRLQGQRSLVA-GLSPREAEVFRFLIRGRLNKQIAHALGISERTVKVHRHQVMEKLG 184

Query: 218 AVNRIQAIAKAIRFGYI 234
             +  +A++ A   G I
Sbjct: 185 VRSLAEAVSIAANIGLI 201


>gi|124004721|ref|ZP_01689565.1| transcriptional regulatory protein DegU [Microscilla marina ATCC
           23134]
 gi|123989844|gb|EAY29373.1| transcriptional regulatory protein DegU [Microscilla marina ATCC
           23134]
          Length = 223

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           T RE   L L    YT++EIA++L +S+ TV  +  +   K    N +  + KA++ G
Sbjct: 160 TPREREVLALILKEYTTQEIADQLFVSIRTVETHRKNLLTKFGVKNVVGLVVKALQMG 217


>gi|186682719|ref|YP_001865915.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465171|gb|ACC80972.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 211

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             +L ++ S  +  L++RE   L+L   G  +++I+  L ++  TV  +  +   KL+  
Sbjct: 137 AAKLAERMS--SEELSDRELEVLRLIAKGKNNQQISNVLNIAESTVRFHTNNIFGKLNVS 194

Query: 220 NRIQAIAKAIRFGYI 234
           +R QA+  A+  G +
Sbjct: 195 DRTQALVTALNRGIV 209


>gi|300786703|ref|YP_003766994.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796217|gb|ADJ46592.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--- 172
           A    +     GY++  +    +   V +   G       + T  L L    +       
Sbjct: 92  AVFAAMRAGARGYLLKGARNEQIIRAVRVIGDGEAIFSPAIATRVLSLLGTATPRDESFP 151

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L   G  +  IAE+L LS  TV  ++     KL   +R QAIAKA   G
Sbjct: 152 RLTLREQEILRLVARGMGNASIAEELVLSQKTVRNHVSHIFRKLRVTDRSQAIAKAKEAG 211

Query: 233 Y 233
            
Sbjct: 212 I 212


>gi|289679770|ref|ZP_06500660.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
          Length = 188

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     ++    LT RE   L L   G+++ EI EKLG
Sbjct: 86  RVARGEEALNSAVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNREIGEKLG 145

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 146 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 180


>gi|258651492|ref|YP_003200648.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554717|gb|ACV77659.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 219

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----ML 141
           P     +           +  ++   L     +A  V         VI           +
Sbjct: 52  PPDVVLLDVHMPDGGGRSVLEQVHSKLPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTI 111

Query: 142 ANEVIIEA--------HGACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAG 186
           +   + +A             ++    L+ F  R S A         L+ RE   L+L  
Sbjct: 112 SGRELADAIVRVSAGDAVFSPRLAGFVLDAFSDRGSPAPITDPELDLLSPREREVLKLLA 171

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            GY  +EIA +L +S+ TV  ++ S   K    NR +    A     +
Sbjct: 172 RGYAYKEIAAQLFISIKTVETHVSSVLRKTQKSNRYELSRWASDRRLV 219


>gi|228936636|ref|ZP_04099430.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823071|gb|EEM68909.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|255532183|ref|YP_003092555.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255345167|gb|ACU04493.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 151

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NL  RE   LQL   G+++ EIA  L +S+ TV  ++ +  VK++  +RI+A+ KA R  
Sbjct: 89  NLNSREYEILQLLAKGHSNAEIAGDLFISLSTVKTHVSNLFVKMNVKSRIKALEKAKRLK 148

Query: 233 YI 234
            I
Sbjct: 149 II 150


>gi|163854702|ref|YP_001629000.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258430|emb|CAP40729.1| transcriptional regulator, LuxR-family [Bordetella petrii]
          Length = 71

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 38/65 (58%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            A+ L+ RE  CL  +  G TS EIA  LG+S  TVN ++G+A  KL   NR  A+A A+
Sbjct: 2   PAKPLSNREHECLHWSAMGKTSWEIAVILGVSERTVNFHIGNACSKLGVYNRRAAVAIAL 61

Query: 230 RFGYI 234
             G +
Sbjct: 62  SQGLL 66


>gi|149187073|ref|ZP_01865379.1| two component system response regulator [Erythrobacter sp. SD-21]
 gi|148829284|gb|EDL47729.1| two component system response regulator [Erythrobacter sp. SD-21]
          Length = 231

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G         ++E ++ A +VI +      ++  +       R+     LT R+   + +
Sbjct: 99  GVMGCMAKSRSAEEIVEAVDVIADGRPYLCKLTIE-QSADAPRTPPIGKLTRRQRKVMAV 157

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              G +++EIA +LG+   TV  ++ +A   L   NR+ A+ +A++ 
Sbjct: 158 MAMGKSNKEIARELGICEGTVKVHVNAAYRALGVHNRVAAV-RALQN 203


>gi|299137407|ref|ZP_07030589.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600812|gb|EFI56968.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 206

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           I A  A  ++I   +        A   L+ERE   L+    G +++ +AE+L +S  TV 
Sbjct: 117 IRAVHAGKRIIPPVIAADLVEHLADDALSEREIEVLRSVASGNSNKLVAEQLAVSEATVK 176

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ S   KL A +R  A+  A++ G+I
Sbjct: 177 GHMKSILSKLGAQDRTHAVTIALKRGFI 204


>gi|183983463|ref|YP_001851754.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
 gi|183176789|gb|ACC41899.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
          Length = 217

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   +   L    ++      LTE+E + L    +G T+ +IA ++ L+  TV  Y
Sbjct: 125 LDNRAAAALMAKLRGGAEQKDPLSGLTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNY 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRFG 232
           +     KL    R QA   A R G
Sbjct: 185 VSRLLAKLGMERRTQAAVFASRLG 208


>gi|168700566|ref|ZP_02732843.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 216

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                 +++  +  +       +L+ERET  ++L   GY+++EIA +L LSV TV  Y  
Sbjct: 130 ALATGELSEVNDPARDAGGTGADLSERETEVVRLIALGYSNKEIAGRLKLSVKTVETYKT 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
            +  KL    R+  +  A R G++
Sbjct: 190 RSMEKLGVRTRVDIVQYAARRGWL 213


>gi|297585551|ref|YP_003701331.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297144008|gb|ADI00766.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 199

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
              +E + EA     Q    F  EL  +   +   LTERE   ++L  +G +++ IAE L
Sbjct: 103 DSPSEELAEAIRQIMQGRRIFAPELIDEVYRSENPLTEREKEVMKLMAEGMSTKLIAETL 162

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L+  TV  Y+ +   KL+  NRI+AI    + G+
Sbjct: 163 FLTNGTVRNYISTILDKLEVDNRIEAIKVYQQKGW 197


>gi|148555723|ref|YP_001263305.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148500913|gb|ABQ69167.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1]
          Length = 146

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTERETSCLQL 184
                +      ++        ++        + +              +T RE + L+ 
Sbjct: 36  LARSHMDEIAIALVAGGFLVLGIVIGIRAFAPRAAPPFDGNPQAIESLGITPRELAVLRE 95

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +++EIA +L +S +TV  ++     KL A  R  A+A+A   G +
Sbjct: 96  LAAGRSNKEIAIRLAVSPNTVKTHVARLFEKLGAARRTDALARARALGIL 145


>gi|330503565|ref|YP_004380434.1| regulatory protein LuxR [Pseudomonas mendocina NK-01]
 gi|328917851|gb|AEB58682.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01]
          Length = 860

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 2/96 (2%)

Query: 141 LANEVIIEAHGACYQVITDF--LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            + E           +++ +   E  +        LTERE   + LA  G ++EEI ++L
Sbjct: 763 ESAERQPALQAFIRSLLSAWPGQEARQALDVLEEGLTEREREVVCLAAKGMSNEEIGQQL 822

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L++ TV  +L +   KL   NR QAI +A     +
Sbjct: 823 SLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 858


>gi|325964186|ref|YP_004242092.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470273|gb|ADX73958.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 229

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITDFLE---LFKKR 167
           +A  V         VI           ++   I +A         V +  L    L    
Sbjct: 96  LALSVSDAAEDVVAVIRAGARGYVTKTISGAEITDAVYRVAGGDAVFSPRLAGFVLDAFG 155

Query: 168 SSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           ++ A         L+ RE   ++L   GY+ +E+A++L +S+ TV  ++ +   KL   +
Sbjct: 156 TAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSAVLRKLQLSS 215

Query: 221 RIQAIAKAIRFGYI 234
           R +    A     +
Sbjct: 216 RHELTKWAAERRLL 229


>gi|254718531|ref|ZP_05180342.1| two component transcriptional regulator, LuxR family protein
           [Brucella sp. 83/13]
 gi|265983502|ref|ZP_06096237.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306838339|ref|ZP_07471185.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653]
 gi|264662094|gb|EEZ32355.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306406630|gb|EFM62863.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653]
          Length = 213

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V    LE  +KRS     L+ RE   L L  +G ++ EIA +LG+S  TV  +  
Sbjct: 129 YFSSGVSEALLESGEKRS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +       AI    
Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208


>gi|159898692|ref|YP_001544939.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891731|gb|ABX04811.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 218

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE + L L   G+T+  IAE+L LS  TV  ++ +   KLD  +R QA   A+  G
Sbjct: 152 RLTERELAVLNLIATGHTNASIAEQLRLSEGTVRNHVSTILSKLDVADRTQAALLAVEHG 211

Query: 233 Y 233
            
Sbjct: 212 L 212


>gi|320160659|ref|YP_004173883.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994512|dbj|BAJ63283.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 215

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
             H A  + +   ++      +    LTERE   LQ    GY++ EIA  L +S  TV+ 
Sbjct: 126 ALHPAVTRYVLGQIKNMPDEPAPEEELTEREKEVLQFMAQGYSNAEIARLLVVSNATVHT 185

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++     KL+  +R QA+  A++ G +
Sbjct: 186 HVSRILSKLNVSSRTQAVLYALKRGIV 212


>gi|319948180|ref|ZP_08022340.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
 gi|319438164|gb|EFV93124.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
          Length = 217

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT RE   ++    G ++ EIA  L +S  TV  ++     KL   +R Q +  A   
Sbjct: 155 DSLTPREREMVEQIATGRSNAEIATALFISEETVKTHVRRVLQKLSLRDRAQVVVYAYEN 214

Query: 232 GYI 234
           G +
Sbjct: 215 GVV 217


>gi|312890536|ref|ZP_07750072.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296994|gb|EFQ74127.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 206

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
            +  L    +++ A    T RE    +L    + +++IA+KL +S  TV  +  +   K 
Sbjct: 129 FSSLLPDEFEKNDALSRFTTREIEIFRLIVKEFNNKQIAQKLFISERTVETHRRNILRKA 188

Query: 217 DAVNRIQAIAKAIRFGYI 234
           DAVN +  +  A     +
Sbjct: 189 DAVNIVGLVKYAYENKIV 206


>gi|312959972|ref|ZP_07774486.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311285756|gb|EFQ64323.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 89

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L ++ S + + LT  E   L+ A +G T  EI++    S  TV  +L +   KLD  NR
Sbjct: 17  ALRRRLSLSGKPLTPSELEILRWASEGKTVWEISQIRATSQATVKFHLRNIYGKLDVSNR 76

Query: 222 IQAIAKAIRFGY 233
           +QA+ +A+R G 
Sbjct: 77  VQAMNEAVRQGL 88


>gi|262164972|ref|ZP_06032710.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223]
 gi|262027352|gb|EEY46019.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223]
          Length = 220

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------VITDFLELFKK 166
           +   V         ++              + ++       Q        +  +L    +
Sbjct: 93  VILTVSDSAADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDE 152

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LTERE   +     GY + +IA++L +S  TV  ++ S   KLD  +R  A  
Sbjct: 153 ESNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATI 212

Query: 227 KAIRF 231
             +  
Sbjct: 213 LYLER 217


>gi|168070046|ref|XP_001786672.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660742|gb|EDQ48513.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 214

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN---LTER 177
           L     GY++       LA  + +          ++ +  ++     + A  N   LT R
Sbjct: 96  LSHGAEGYLLKAIHPKDLAAGIRVVQAGGTLISQEMASKMIKNMNSATPAKHNEFGLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E   L     G  ++EIAE L LS  TV  Y+ +   KL+   R +A  KA   G 
Sbjct: 156 EIEVLHKLAAGLRNQEIAEALFLSEGTVKNYISTIYSKLNVKGRREATQKARDSGM 211


>gi|37519864|ref|NP_923241.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35210856|dbj|BAC88236.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 236

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 18/222 (8%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN--ILIE 70
           SLQ+L   +H I+     +  +         F  ++  I        D    P   + + 
Sbjct: 4   SLQQLFEEIHQIEGEENLQ--SHLAPKIGAYFAAQRSGIFLFDRLLSDRKLRPVLNVALS 61

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              +    +      P+     +       +  L           AG   PV       G
Sbjct: 62  IERNPIARYIAERHTPVH----EGLVTSPRAWALVCPRPDHWHVMAG---PVLDRNQLVG 114

Query: 131 YV--IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-----AARNLTERETSCLQ 183
            V            ++ + +    C  +                  AA  LT RE     
Sbjct: 115 AVGCTRARSMPAFDHQNLTDLSAICLHLSVWTTTARASPKPQFQTLAAHRLTPRELQIAG 174

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           L   G T+ EI  +L ++ ++V   L     KL+  +R + I
Sbjct: 175 LVALGRTNAEIGTELWITENSVKQALKRMYRKLEVTSRTEMI 216


>gi|313202129|ref|YP_004040787.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|312441445|gb|ADQ85551.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 232

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              LE   +++     LT+RE   LQ   DG  ++ IA KLG+S  TV  ++     KL 
Sbjct: 158 QALLEPRTRKADDDVALTDREQEILQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLK 217

Query: 218 AVNRIQAIAKAIR 230
             +R++A   A R
Sbjct: 218 LTSRLEAAVWAHR 230


>gi|167758853|ref|ZP_02430980.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704]
 gi|167663593|gb|EDS07723.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704]
          Length = 207

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A  ++ +E   + L  +G +++EIA++L LS  TV  Y+ S   KL+  +R Q    
Sbjct: 145 AHEISGKELEVISLVAEGLSNKEIAKRLFLSEGTVRNYISSILDKLELRDRTQLAVY 201


>gi|260776036|ref|ZP_05884931.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607259|gb|EEX33524.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 212

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L  +G +S++IA  L +S  TV  +  +   KLD  +  +    A+  G
Sbjct: 150 PLSRREEAVLKLVAEGNSSKKIAALLSISYRTVETHRQNIKQKLDLHSTAELAKYAVEQG 209

Query: 233 YI 234
            +
Sbjct: 210 LL 211


>gi|254390047|ref|ZP_05005268.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703755|gb|EDY49567.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 723

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +   + A + ++        + T               LT RET  L+L   G  +  I
Sbjct: 616 AALRTVSAGDAVVAPRLLTRLIGTFVAPQRTTEEVRLDGLTPRETEVLRLIATGLDNTGI 675

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+LG+ V TV  ++ S   KL   +R QA+  A   G +
Sbjct: 676 AEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 715


>gi|182436531|ref|YP_001824250.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777153|ref|ZP_08236418.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465047|dbj|BAG19567.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326657486|gb|EGE42332.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 231

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 113 IRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231


>gi|113867436|ref|YP_725925.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113526212|emb|CAJ92557.1| transcriptional regulator, LuxR-family containing alpha/beta
           hydrolase domain [Ralstonia eutropha H16]
          Length = 378

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 36/90 (40%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           E          +V          R  A   LT RE   ++L   G  + +IA  L L   
Sbjct: 284 ETEPAWLRWLDEVRAFLPATEPVRDPAFSALTRRERDIVELIAQGRDNAQIAAHLDLCEK 343

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ S   KL+  NR QAI  A + G+
Sbjct: 344 TVRNHITSIFAKLEVENRAQAIVLARKAGF 373


>gi|110634204|ref|YP_674412.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285188|gb|ABG63247.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 310

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 146 IIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           ++E     +       EL   K+       LT RE   L L  +G +++EIA++LG+S  
Sbjct: 220 LMEMGSTAHHSFAQASELDLIKRLPRPEEPLTGREQEVLSLVLEGRSNKEIAKQLGISHR 279

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAI 229
           TV  +   A  K +A   +Q I +A+
Sbjct: 280 TVEIHRSRAMAKYNATTAMQLIRRAM 305


>gi|152977535|ref|YP_001377052.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|114152690|gb|ABI52594.1| two-component response regulator [Bacillus cytotoxicus]
 gi|152026287|gb|ABS24057.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 200

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
              +E + EA     +   +   EL          L++RE   L LA +G T+ +IA+ L
Sbjct: 105 DSPSEELAEAIRNVMKGKREISPELMFGLWQEQNPLSDREREVLLLAKEGKTTNDIAKAL 164

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  TV  Y+     KL+A NRI+AI  A   G+I
Sbjct: 165 YLSPGTVRNYISEVLTKLNAKNRIEAITIAEEKGWI 200


>gi|317128933|ref|YP_004095215.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315473881|gb|ADU30484.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 708

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 164 FKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            ++RS  ++      L++RE   L L   GY++ +IA  L +S HTV  ++     KLD 
Sbjct: 630 MEERSPKSKITEDLKLSKRELDVLDLVLKGYSNSDIANTLFISDHTVKNHMTKILQKLDC 689

Query: 219 VNRIQAIAKAIRFGY 233
            +R QAIAK  + GY
Sbjct: 690 TDRSQAIAKVYQMGY 704


>gi|238756079|ref|ZP_04617401.1| Two component transcriptional regulator, LuxR family [Yersinia
           ruckeri ATCC 29473]
 gi|238705685|gb|EEP98080.1| Two component transcriptional regulator, LuxR family [Yersinia
           ruckeri ATCC 29473]
          Length = 209

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV------- 156
           L    +    I   V         +I              EV++E      Q        
Sbjct: 72  LRHEGIAAKIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEVLLEHLCLAAQGESVFSRE 131

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +TD+L    ++ +    LTERE   LQ    G +++++A +L +S  TV  ++ +   KL
Sbjct: 132 VTDYLASRHEQINPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKL 191

Query: 217 DAVNRIQAIAKAIRF 231
           +  +R+ A    +  
Sbjct: 192 NVRSRVAATILYLEN 206


>gi|253988248|ref|YP_003039604.1| two-component response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638760|emb|CAR67377.1| two-component response regulator. hexose phosphate transport syste
           regulatory protein uhpa [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779698|emb|CAQ82859.1| two-component response regulator. hexose phosphate transport syste
           regulatory protein uhpa [Photorhabdus asymbiotica]
          Length = 210

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 11/184 (5%)

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
            +    +   Y        +    PI    +      ES   L  RL      F  I   
Sbjct: 23  LENDLEIAGQYSSANEAWLDLLRNPIDVAVMDIAMPDESGLHLLTRLRQKRPDFRTIILS 82

Query: 122 VRL------GFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN 173
           +             G   + ++        + +   H     +  D L+  ++     + 
Sbjct: 83  IYDTTAFVQSALDAGACGYLTKRCGPEELVQAVRSVHKGGCYLCADALKALRQTPQDIKA 142

Query: 174 L---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           L   T RE     L  +G +++ IAE+L LS  TV+ +  +   KL   + I+ +  A++
Sbjct: 143 LQILTPREREIFDLLINGISAKTIAEQLNLSPKTVHVHRANILGKLQCDSTIELVHYALQ 202

Query: 231 FGYI 234
              +
Sbjct: 203 HQLL 206


>gi|254391784|ref|ZP_05006980.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813562|ref|ZP_06772205.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705467|gb|EDY51279.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326161|gb|EFG07804.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSE 192
               +     V +  H A  +   +     + R+ A  +  LTERE   ++    G T+E
Sbjct: 125 GGSLISPTITVRLLRHMASPEPDRNGRPAAEHRAPARLSEPLTERELDVIRRVARGRTNE 184

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+A +L +++ TV  +LG+   KL A NR++  A A   G +
Sbjct: 185 EVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGLV 226


>gi|282863714|ref|ZP_06272772.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561415|gb|EFB66959.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A+   + A     ++IT+F ++       A      LTERET  L 
Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKIATAPRPPAMARIGDLTERETEVLV 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G +++EIA  L ++  T+  ++    VKL   +R QA   A     +
Sbjct: 169 LIAQGLSNQEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|282881294|ref|ZP_06289978.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
 gi|281304839|gb|EFA96915.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
          Length = 221

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +  +E++                L    +    + L++RE   L L   GY ++EIA++L
Sbjct: 121 VPEDELVRSVLMLEQHAHGTGQHLPPLPKVLKKKVLSDREIEVLSLIVQGYINKEIADRL 180

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + + TV  +  +   KL   +       A+  GY+
Sbjct: 181 NIGMTTVITHRKNIMEKLGVKSVSALTIYAVTHGYV 216


>gi|241207011|ref|YP_002978107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860901|gb|ACS58568.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 260

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
              ++ L+L +   SA   LT RE   L L   G  ++ IA+KL LS +TV  ++ +   
Sbjct: 173 AARSNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYK 229

Query: 215 KLDAVNRIQAIAK 227
           K++  NR +A ++
Sbjct: 230 KMNVRNRTEAASR 242


>gi|256376857|ref|YP_003100517.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921160|gb|ACU36671.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 227

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 2/106 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +      +L+ EV                        A  +LT+RE   L     G
Sbjct: 119 EAIRVVARGDALLSPEVTRRVLARFAGPAPRAAPATAPNRPA--DLTDREYEVLVHLARG 176

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIA +L L   TV  ++     KL   +R  A+  A   G +
Sbjct: 177 SSNAEIAARLHLGETTVKTHVSRVLAKLGLRDRTHAVVYAYEHGVV 222


>gi|222055689|ref|YP_002538051.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
 gi|221564978|gb|ACM20950.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
          Length = 216

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 35/67 (52%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + +   NL+++E   +     G  ++EIA++L +S  TV  ++     K+D V+R Q + 
Sbjct: 150 KPAGRANLSKKEQDIVAFIAQGLKNKEIAQRLCISEQTVKTHISRIFKKVDVVSRSQLVP 209

Query: 227 KAIRFGY 233
            A++   
Sbjct: 210 LALKLRI 216


>gi|167574161|ref|ZP_02367035.1| probable two-component response regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 192

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 151 GACYQVITDFLELFK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
              + VI   L + +         A  LT RE   L+L  +G  + +IAEKL +++ TV 
Sbjct: 105 WRGHTVIDPALNVDQVTTKAVPDGAVALTPRERQVLKLISEGCRNRDIAEKLTITIKTVE 164

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +  +   KLDA N  +    A R G 
Sbjct: 165 THRLNLMRKLDAHNAAELANWAHRLGL 191


>gi|307332179|ref|ZP_07611263.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306882168|gb|EFN13270.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    LT RE   L   G G +++EIA +L +S  TV  ++  A  KL A +R Q +  
Sbjct: 155 AARLDALTVREREVLVQVGGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 214

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 215 AYETGLV 221


>gi|293605268|ref|ZP_06687654.1| nitrate/nitrite response regulator protein NarL [Achromobacter
           piechaudii ATCC 43553]
 gi|292816324|gb|EFF75419.1| nitrate/nitrite response regulator protein NarL [Achromobacter
           piechaudii ATCC 43553]
          Length = 221

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              L    K  +    LT RET  +Q    G +++ IA +L +S  TV  ++ +   KL+
Sbjct: 141 QASLAAQGKSPAERHRLTARETQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLN 200

Query: 218 AVNRIQAIAKAIRFGY 233
             +R+Q    A+  G 
Sbjct: 201 LTSRVQVAVYAVEHGL 216


>gi|190891418|ref|YP_001977960.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696697|gb|ACE90782.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 207

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+ + L      +S   +LT RE   + L   G +++ I  +L L   TV  ++  
Sbjct: 130 MSTKVMENSLH---DAASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 186

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL   NR +A  +    
Sbjct: 187 ILSKLGVSNRTEAALQWRER 206


>gi|117620400|ref|YP_858390.1| csgAB operon transcriptional regulatory protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561807|gb|ABK38755.1| probable csgAB operon transcriptional regulatory protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 219

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT RE   ++    G ++ EIA+ L +S HT+ ++L +   KL+  NR+QA++ A  
Sbjct: 161 LTVREQEIIRYLMTGASNTEIADSLFVSEHTIKSHLYNVFKKLNVKNRLQAVSWAKE 217


>gi|116694039|ref|YP_728250.1| response regulator [Ralstonia eutropha H16]
 gi|113528538|emb|CAJ94885.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 297

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 8/162 (4%)

Query: 78  FHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLG-----FHKNGY 131
               S    +   ++      I+            LL   G    +             +
Sbjct: 135 RLARSAREAVFGSTVPMLAAGIDGRLLWINGSASALLQAQGWPVAIAGAVLPPALRDAVF 194

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            + +       +  +    G    V+   L      + A   LT RE   +     G T+
Sbjct: 195 RLCSEAETGADSLHLRRLTGEAGDVVVVELSCS-GLAPAGPALTLREAEVMAWVARGKTN 253

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +IA+ LG+S  TVN +L     KL    R  A+A A R   
Sbjct: 254 RDIADILGMSPRTVNKHLEHIYEKLGVETRTAAVA-ATRRNL 294


>gi|83745537|ref|ZP_00942595.1| Hypothetical Protein RRSL_04596 [Ralstonia solanacearum UW551]
 gi|207722406|ref|YP_002252842.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207738930|ref|YP_002257323.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83727614|gb|EAP74734.1| Hypothetical Protein RRSL_04596 [Ralstonia solanacearum UW551]
 gi|206587585|emb|CAQ18167.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206592301|emb|CAQ59207.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 217

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGY 189
           +        A E +I       +++  F    K           LT RE   +Q    G 
Sbjct: 112 LVAGVRKAAAGEPVIAESMTA-KLVAHFRAPEKPVQPEAVPVERLTLRERDIVQGLVRGD 170

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +++EIA  L ++  TV  ++ +   KL+  +R+Q    A+  G 
Sbjct: 171 SNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVEKGL 214


>gi|311899311|dbj|BAJ31719.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 219

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAA------RNLT 175
            H     +       L  E +  AH         V    L     R+ AA        LT
Sbjct: 98  RHGASGFLLKRSGPALLVEAVRAAHAGDSLISPSVTVRLLRHVTGRAPAASGPGLLEPLT 157

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE        +G T+ +IA +L +S  TV  ++ S   KL   NR+    +A   GY
Sbjct: 158 RREREVAGKVAEGRTNADIAGELFISAGTVKTHVASIQRKLGVRNRVGIAMRAFELGY 215


>gi|229094465|ref|ZP_04225535.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228688929|gb|EEL42758.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTASEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|261337245|ref|ZP_05965129.1| response regulator of two-component system [Bifidobacterium
           gallicum DSM 20093]
 gi|270277604|gb|EFA23458.1| response regulator of two-component system [Bifidobacterium
           gallicum DSM 20093]
          Length = 275

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L     G +++ IA KL +S+ TV  ++     K+ A +R+QA+  A
Sbjct: 210 PELALLTDREREVLIEVAHGLSNQVIASKLFISLPTVKTHVAHILSKIHARDRVQAVVFA 269

Query: 229 IRFGYI 234
                +
Sbjct: 270 YENHLV 275


>gi|170739988|ref|YP_001768643.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194262|gb|ACA16209.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46]
          Length = 118

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 38/67 (56%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +    LT RE   L L  +G +++ IA +LG+SVHT   ++GS   KLDA  R  A+A 
Sbjct: 50  PAPDPGLTPREIEVLGLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAVAH 109

Query: 228 AIRFGYI 234
           A R G I
Sbjct: 110 AARRGVI 116


>gi|83720601|ref|YP_442380.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           E264]
 gi|257138583|ref|ZP_05586845.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           E264]
 gi|83654426|gb|ABC38489.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           E264]
          Length = 233

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 164 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 223

Query: 232 GY 233
           G 
Sbjct: 224 GL 225


>gi|116622583|ref|YP_824739.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225745|gb|ABJ84454.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 210

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L     +A   LT RE   LQL   G +++EIA  L LS +TV  +  +    L 
Sbjct: 131 RRLGALDLPSGAAPAGLTTRELEVLQLIVHGKSNKEIAAVLSLSANTVAVHRANIMQTLG 190

Query: 218 AVNRIQAIAKAIRFGYI 234
             N  + +  AIR G +
Sbjct: 191 IHNTAELVVYAIRQGLV 207


>gi|94972309|ref|YP_594349.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554360|gb|ABF44275.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 209

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +   A   LT RE   L+L  DG  ++EIA  L +SV TV  ++    VKL A +R QA 
Sbjct: 141 RAPDAGAPLTPRELDVLRLIADGLANKEIAAALEISVSTVKLHVQEILVKLQAADRTQAA 200

Query: 226 AKAIRFGYI 234
            KA+R G +
Sbjct: 201 VKALRAGLL 209


>gi|332672006|ref|YP_004455014.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332341044|gb|AEE47627.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 212

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFLELFKKRSSAARNLTE 176
           +R G         T+E L+ A  ++ +           +++ DF    +  S+    LT 
Sbjct: 94  LRAGASGFLLKDVTAERLVDAVRLVADGSMLLGANVTRRLVEDFARRGRVPSTTLDALTP 153

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE         G ++ EIA +L +   TV  ++     KL   +R+Q +      G +
Sbjct: 154 REHDVALAVARGLSNGEIAAELFIGEATVKTHVSECLRKLGCRDRVQLVVTVHEAGLL 211


>gi|332289326|ref|YP_004420178.1| response regulator FixJ [Gallibacterium anatis UMN179]
 gi|330432222|gb|AEC17281.1| response regulator FixJ [Gallibacterium anatis UMN179]
          Length = 193

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             L+E+E   L L  +G  +++IAE+L +SV TV  +      K++A N  + I KA
Sbjct: 133 DQLSEKEKEVLALIIEGNINKQIAERLNISVRTVEVHRSHIMEKMNAKNVAELIRKA 189


>gi|318042198|ref|ZP_07974154.1| DNA-binding response regulator [Synechococcus sp. CB0101]
          Length = 236

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LTERE   LQ      T+ EIA  L LS+ TV +++     KLDA +R+QA  K 
Sbjct: 165 APLAPLTERELEVLQRIAANATNPEIAADLFLSIETVKSHVAQVLHKLDARSRLQAAIKG 224

Query: 229 IRFGYI 234
           IR G +
Sbjct: 225 IRLGLV 230


>gi|254392026|ref|ZP_05007217.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294814548|ref|ZP_06773191.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442938|ref|ZP_08217672.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705704|gb|EDY51516.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327147|gb|EFG08790.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 233

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 115 IRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 174

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 175 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 233


>gi|330899624|gb|EGH31043.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 642

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELF 164
                LL     + P   G     +     E     +E ++          ++       
Sbjct: 512 DEARALLLR---SLPAASGGALIPFKALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACC 568

Query: 165 KKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 A     L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R
Sbjct: 569 TPSPEPAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERR 628

Query: 222 IQAIAKAIRFGYI 234
            QA+A+A   G +
Sbjct: 629 TQAVARAKTLGLL 641


>gi|330468676|ref|YP_004406419.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811647|gb|AEB45819.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 227

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 33/70 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                    LTERE   L L   G  + EIAE++ ++  TV  ++G    KL   +R+QA
Sbjct: 148 PGEDPRLAQLTEREREILLLVAQGLANAEIAERVHVAEATVKTHVGRILAKLQLRDRVQA 207

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 208 VVLAYESGLV 217


>gi|239636020|ref|ZP_04677034.1| transcriptional regulatory protein DegU [Staphylococcus warneri
           L37603]
 gi|239598291|gb|EEQ80774.1| transcriptional regulatory protein DegU [Staphylococcus warneri
           L37603]
          Length = 224

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             S   + L++RE   L L   GY ++EIAEKL +SV TV A+      KL+  ++ + +
Sbjct: 148 DTSDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPELV 207

Query: 226 AKAIRFGYI 234
             A++   +
Sbjct: 208 EYAMKKKLL 216


>gi|228919418|ref|ZP_04082785.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840249|gb|EEM85523.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 217

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +  LT RE    +   +G +++ I+++L ++  TV  Y+     KL+  NR +    
Sbjct: 155 PSNLLTPRELEVAKHIMEGKSNKAISKELFITEGTVKNYVSRILEKLELNNRTELTLY 212


>gi|228961616|ref|ZP_04123225.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798098|gb|EEM45102.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|228917960|ref|ZP_04081496.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841757|gb|EEM86868.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|158333495|ref|YP_001514667.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158303736|gb|ABW25353.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 225

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L     G +++ IA  L +++ TV A+L +   KL+  +R QAI KA++ G 
Sbjct: 163 LTAREKQVLHWLVQGASNQAIANHLHITIATVKAHLTAVFEKLEVKSRSQAIVKALKLGL 222

Query: 234 I 234
           +
Sbjct: 223 V 223


>gi|297623722|ref|YP_003705156.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297164902|gb|ADI14613.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 226

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            A    +  H    + +   +     R      LT RET  L+  G G +++EIA  LGL
Sbjct: 134 AAARGEVRLHPEAAKRLLRSVRTSDMR----EALTARETDILRHIGRGESNKEIAAALGL 189

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV  ++     KL   +R QA   A++ G +
Sbjct: 190 SELTVKTHVSRLLSKLGLASRTQAALFALKEGLV 223


>gi|311744719|ref|ZP_07718516.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium
           marinum DSM 15272]
 gi|311312028|gb|EFQ81948.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium
           marinum DSM 15272]
          Length = 222

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 19/174 (10%)

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
              +   P     +         G++  R+         +A  V         VI     
Sbjct: 50  AALTATTP-DVVLLDVHMPGGGGGEVLRRMLPRHPDMRFLALSVSDAAEDVIGVIRAGAR 108

Query: 139 L----MLANEVIIEAHGA--------CYQVITDFLELFKKRSSAA------RNLTERETS 180
                 ++   +++A             ++    L+ F      A        LTERE  
Sbjct: 109 GYVTKNISGPELLDAIARVAAGDAVFSPRLAGFVLDAFAGTIEVAQIDTDLDRLTERERE 168

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++L   GY  +E+A++L +S+ TV  ++ S   KL   +R +    A     I
Sbjct: 169 VMRLIARGYAYKEVAKELFISIKTVETHVSSVLRKLQLSSRHELTRWANDRRLI 222


>gi|289524366|ref|ZP_06441220.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502394|gb|EFD23558.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 167

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSE 192
           F      ++ +++     A   V+ D+L L +    AA   L+ RE   L+L   G  ++
Sbjct: 60  FVRGIKAVSQDLVYLTPKAAKIVLEDYLLLKRGSVLAAENKLSPREMEVLRLLVKGEHTK 119

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            IA K  +S  TV+ +  +   KL+  N       AIR G +
Sbjct: 120 SIASKPSISKSTVDTHRKNIMEKLNCANIADLTRYAIREGLV 161


>gi|256370998|ref|YP_003108822.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007582|gb|ACU53149.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 216

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 23/143 (16%)

Query: 111 GLLPFAGIAFPV--------------RLGFHKNGYVIFTSEFLMLAN--------EVIIE 148
             L   G+A PV               L     GY++  +    L          E +I+
Sbjct: 69  EDLQRRGVAVPVVFYSAYDDEAYLFRALRAGARGYLLKQASGEELVGMLERAAGGETMID 128

Query: 149 AHGACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           A  A    ++   L+  +    A   LT+RE+  L L   G ++ +IA++L L   TV  
Sbjct: 129 AALAGRVALLAARLQFGEFWPGAHLGLTQRESEILDLVVKGLSNRDIAQRLFLGEETVKT 188

Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230
           +L S   KL    R +AIA A+R
Sbjct: 189 HLSSIYRKLKVKGRAEAIAVALR 211


>gi|229014521|ref|ZP_04171639.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229136171|ref|ZP_04264924.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170061|ref|ZP_04297752.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613408|gb|EEK70542.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228647330|gb|EEL03412.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228746871|gb|EEL96756.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KL+A NR
Sbjct: 117 ELMFGLWQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNR 176

Query: 222 IQAIAKAIRFGYI 234
           I+AI  A   G+I
Sbjct: 177 IEAITIAEEKGWI 189


>gi|225181500|ref|ZP_03734942.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167748|gb|EEG76557.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 212

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            NLT +E   L +   G  ++EIAE + +S  TV  Y+ +   KL+  NR +A +  +R 
Sbjct: 149 HNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRNYVSNILQKLNVSNRTEAASYWMRN 208


>gi|254390102|ref|ZP_05005323.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813469|ref|ZP_06772112.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441818|ref|ZP_08216552.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703810|gb|EDY49622.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326068|gb|EFG07711.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 219

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL---------FKKRSSAAR-- 172
           L    +G+++  +    LA  V + A G      T    L           + +S A+  
Sbjct: 95  LRAGASGFLLKDASARQLAEGVRVVASGEALLAPTVTRRLINEFSKLAQAPRIASVAQLG 154

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERET  L L   G ++ EIA  L ++  T+  ++    VKL   +R QA   A    
Sbjct: 155 ELTERETEVLALIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 214

Query: 233 YI 234
            +
Sbjct: 215 LV 216


>gi|88706477|ref|ZP_01104181.1| two component system response regulator [Congregibacter litoralis
           KT71]
 gi|88699189|gb|EAQ96304.1| two component system response regulator [Congregibacter litoralis
           KT71]
          Length = 225

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 132 VIFTSEFLMLANEVII--EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
            +  +   +     ++  +      +            +     LT RE   L+  GDG 
Sbjct: 112 ELVAAVRTVADGRALLGPDITRRLIEQFARQGGGSSALAERLERLTGREQEALRCVGDGM 171

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++EIA  LG+   TV  ++ S   KL   +R QA+  A   G 
Sbjct: 172 NNQEIARHLGIGPATVKTHVSSLLSKLGLRDRAQAVVFAYESGL 215


>gi|86136672|ref|ZP_01055251.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
 gi|85827546|gb|EAQ47742.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
          Length = 214

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  K   A   LT RE + L     G +++++A  L +SV TV  +  +   KL   + 
Sbjct: 135 ALKPKSGEAREALTGREQTILLELAQGKSNKDVAHSLDISVRTVETHRKNIKRKLGISST 194

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 195 AGLTRYALEHGVL 207


>gi|261407019|ref|YP_003243260.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283482|gb|ACX65453.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 601

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 150 HGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
            G  +++         +   +      A +LT RE   LQ   +G   + IA KL LS  
Sbjct: 510 QGMSHKLFAQLEADNSRDDPSSIKASSAYDLTPRELEILQFVSEGLRYKSIASKLYLSDG 569

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  Y  S  +KL   NR +A+ KA   G +
Sbjct: 570 TVRNYASSVYMKLGVRNREEAVQKAREAGLL 600


>gi|121592864|ref|YP_984760.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|222109644|ref|YP_002551908.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|120604944|gb|ABM40684.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
 gi|221729088|gb|ACM31908.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 223

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 42/123 (34%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
           +           +   +                 +++ E++ +   A         E   
Sbjct: 93  LAAALRNGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPTPEPLP 152

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +    A  L+ RE   L+    G +++EIA  L ++  TV  ++     KL   +R+QA 
Sbjct: 153 EEEEPASVLSPREEDVLREIARGLSNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAA 212

Query: 226 AKA 228
             A
Sbjct: 213 VYA 215


>gi|315501090|ref|YP_004079977.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315407709|gb|ADU05826.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 220

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                  +       LTERE   L L   G +++EIA +L LS  T   ++     K   
Sbjct: 137 AARTRHPEPGPRLNALTEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRV 196

Query: 219 VNRIQAIAKAIRFGY 233
            +R Q +  A   G 
Sbjct: 197 RDRAQLVVLAYESGL 211


>gi|229590605|ref|YP_002872724.1| putative GerE familyregulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229362471|emb|CAY49377.1| putative GerE familyregulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 261

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 63/216 (29%), Gaps = 17/216 (7%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +   N               ++   +  +          +      D F      G
Sbjct: 33  LHQCLPFDNALAIFYPLEGPPQALEEYDAQPSSKPASMLVY--LNGLYLLDPFFQACREG 90

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL--ML 141
               +++  +         +  +      +    +   ++L       +    +    + 
Sbjct: 91  YASGVYRLEEVAPDHFRQSEYFLNYFHDNVLEDEVQLILQLPGAGTLSLSLGRQRRFSVE 150

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDG 188
              ++         ++    +   +R+ A  +             L++RE    +L   G
Sbjct: 151 ETGLMTTMAAWVLPLMQQHWQQSTQRAPAMDSQIRDALSQFGCGVLSDRELEIARLVLRG 210

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++S+ +AE+L +S  TV  +      KLD  ++ + 
Sbjct: 211 FSSKAMAERLNISPDTVKVHRRHLYAKLDISSQPEL 246


>gi|153212273|ref|ZP_01948061.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124116651|gb|EAY35471.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
          Length = 216

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213

Query: 233 YI 234
            +
Sbjct: 214 LL 215


>gi|327405789|ref|YP_004346627.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Fluviicola taffensis DSM 16823]
 gi|327321297|gb|AEA45789.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Fluviicola taffensis DSM 16823]
          Length = 186

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++RE   L+L   G+++ EIAE+L +S++T+  +      KL+   R QA+  A R G I
Sbjct: 125 SKRELEVLELIAQGFSNHEIAERLFVSLNTIKTHSSKLFEKLEVNRRTQAVEVAKRLGII 184


>gi|284046422|ref|YP_003396762.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950643|gb|ADB53387.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 218

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 1/144 (0%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
           +I          ++ V        +AG A  +                L     V+    
Sbjct: 70  AIPRLRASSPQTRVVVLTAQRDPSYAGEALRL-GATGYVPKEAAGGHLLEAIAAVMAGGT 128

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               Q+           + AA  LT RE   L+L   G T+ EIAE+L LSV TV ++  
Sbjct: 129 YLEPQLGARLAATAAAAAGAAPELTARELEVLRLIARGLTNREIAERLFLSVRTVESHRA 188

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL    R   +  A+  G +
Sbjct: 189 RIQRKLGRSRRSDLVDYALERGLV 212


>gi|229199478|ref|ZP_04326139.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228583883|gb|EEK42040.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|326442029|ref|ZP_08216763.1| LuxR family two component transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 229

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSE 192
               +     V +  H A  +   +     + R+ A  +  LTERE   ++    G T+E
Sbjct: 128 GGSLISPTITVRLLRHMASPEPDRNGRPAAEHRAPARLSEPLTERELDVIRRVARGRTNE 187

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+A +L +++ TV  +LG+   KL A NR++  A A   G +
Sbjct: 188 EVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGLV 229


>gi|119511948|ref|ZP_01631045.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463368|gb|EAW44308.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 69

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            LT RE   L+L   G  + EI+++L +S  TV  ++ +   +L+  +R QA   A
Sbjct: 3   ELTPREKEVLRLIAVGANNREISQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 58


>gi|113969495|ref|YP_733288.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|113884179|gb|ABI38231.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 225

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           H     V+          +       L+ERE   L     G++++EIA  + L+  TV  
Sbjct: 139 HLIEPSVLEQMQQSSATAQSGPTHYLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKN 198

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KLD  +R QA+ K ++   I
Sbjct: 199 HVSTILAKLDCRDRTQAVLKGLQLSLI 225


>gi|322383304|ref|ZP_08057104.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152424|gb|EFX45223.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 872

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 151 GACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
               ++ +  +E+ K RS    +       L++RE   LQ+   G  ++EI ++L +S+ 
Sbjct: 781 RFAQRIQSFVVEVKKGRSLPLASAEQETAILSKRELEVLQVLAAGRRNKEIGKELCISLA 840

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV +++ +   KL   NR++A+ +      +
Sbjct: 841 TVKSHVINIYSKLQVSNRVEAVERGRELRLL 871


>gi|317405306|gb|EFV85631.1| nitrate/nitrite response regulator protein [Achromobacter
           xylosoxidans C54]
          Length = 223

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 39/103 (37%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +   +    +  E +       ++             +    LT RE   +Q    G +
Sbjct: 115 AIRRAAAGEPVIAESMTAKLVEQFRGQASLAAQAPAGQAERHRLTARERQIVQCLARGAS 174

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ IA +L +S  TV  ++ +   KL+  +R+Q    A+  G 
Sbjct: 175 NKVIARELDVSESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 217


>gi|221200509|ref|ZP_03573551.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221206190|ref|ZP_03579204.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221174202|gb|EEE06635.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221179850|gb|EEE12255.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 209

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
               +   R +A   LT R+   L+   +G  ++ IA++LGLS  TV A++ +    L  
Sbjct: 134 AAYAIEPTRHAAGAPLTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHV 193

Query: 219 VNRIQAIAKAIRFGYI 234
           +NR QA A   + G I
Sbjct: 194 LNRTQAAAAGRKAGLI 209


>gi|188026515|ref|ZP_02962402.2| hypothetical protein PROSTU_04517 [Providencia stuartii ATCC 25827]
 gi|188019236|gb|EDU57276.1| hypothetical protein PROSTU_04517 [Providencia stuartii ATCC 25827]
          Length = 234

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 59/205 (28%), Gaps = 12/205 (5%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L+ I + I       Y ++        Q     L+                  D      
Sbjct: 30  LNTIAHIIPVSASVYYLVD-----DFWQPDNHVLYGISSRMHQDYLKHFYQL-DPLHPDK 83

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
             G    + +   +    + S +                  +R        +        
Sbjct: 84  FRGDDLRLVRMAPDMK--QQSQEFYNDFMRPNNITDMAEIFIRRKNKIIAGISVLR-DAP 140

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
              + ++  +          L  F     +  + T +E   + L  +G +++ IA +LG+
Sbjct: 141 FQQQEVMRLNAILPIA---ELMTFDILPDSLVSYTPKEQEIIHLVREGASNKRIALQLGV 197

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAI 225
           S+ TV  +L +   K +  NR + +
Sbjct: 198 SLSTVKTHLRNIFTKANVSNRTELV 222


>gi|134287108|dbj|BAF50712.1| putative two component regulator [Streptomyces virginiae]
          Length = 277

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE+  L L   G ++ EIA  L LS HTV +++ +   KL   +R+QA+  A   
Sbjct: 212 DELTARESEVLDLIARGLSNAEIAGALMLSEHTVKSHVQNLLGKLRLRSRVQAVVYAYEI 271

Query: 232 GY 233
           G 
Sbjct: 272 GL 273


>gi|92115421|ref|YP_575349.1| LuxR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91798511|gb|ABE60650.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 238

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +  +     ++I  +             LT RE   + L G G ++ EIA++L +S HT
Sbjct: 134 DLWMSRNLMTRLIDFYRRQQLNAYRPVCGLTHRELEIIGLLGTGASNTEIADQLFVSEHT 193

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRF 231
           V ++L +   K+   NRIQA+  A + 
Sbjct: 194 VKSHLYNIFRKIKVHNRIQAMNWARQN 220


>gi|329934362|ref|ZP_08284441.1| two-component response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329305958|gb|EGG49813.1| two-component response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 221

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 136 SEFLMLANEVII--EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
               + A + ++   A  A         E        A  LT RE    +L  +G +  E
Sbjct: 117 GIRTVAAGDALLSPAATRALITRFLATPEAEAVTGPDAGVLTAREREVTELVAEGKSDAE 176

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IAE+L LS  TV  ++  A  KLDA +R Q +A A R G 
Sbjct: 177 IAEQLFLSPLTVRTHVQRAKTKLDARSRAQLVAIAYRSGL 216


>gi|302875540|ref|YP_003844173.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307690067|ref|ZP_07632513.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302578397|gb|ADL52409.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 220

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE    +L   G ++++I   L L+  TV  Y+     KL+  +R +      + G
Sbjct: 159 SLTPREIDVAKLVAQGKSNKDICRSLFLTEGTVKNYVTRILGKLELNSRTELAVFINQAG 218

Query: 233 Y 233
            
Sbjct: 219 I 219


>gi|111222400|ref|YP_713194.1| putative sensory transduction protein [Frankia alni ACN14a]
 gi|111149932|emb|CAJ61626.1| Hypothetical sensory transduction protein [Frankia alni ACN14a]
          Length = 232

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 35/88 (39%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                     + D              LT+RE   L     G+++ EIA  L LS  TV 
Sbjct: 132 RRLLDTFAHRLPDPDSPRAPADPRLARLTDRELVVLGEVAAGHSNAEIAAHLVLSEATVK 191

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++G    KL+  +R+QA+  A   G +
Sbjct: 192 THVGRILAKLELRDRVQAVVFAYETGLV 219


>gi|308175685|ref|YP_003922390.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608549|emb|CBI44920.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555666|gb|AEB26158.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           TA208]
 gi|328914044|gb|AEB65640.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           LL3]
          Length = 199

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +        LTERE + L+L  DG  ++EIA  L +   TV  Y+     KL+  NR
Sbjct: 126 ELMEDIYGEENPLTEREKAVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNR 185

Query: 222 IQAIAKAIRFGY 233
           I+AI ++   G+
Sbjct: 186 IEAITRSKEKGW 197


>gi|258650793|ref|YP_003199949.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554018|gb|ACV76960.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 215

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             ++  +       + +I        +                 LT RE   L     G 
Sbjct: 111 PALLTQAIHAAADGDALIAPSVTVRLLAAFAQAPTSPPRQPLEPLTAREEEVLVTVAQGR 170

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           T+ EIA +L ++  TV A++ S   KL A NR++    A   G
Sbjct: 171 TNSEIASQLFITSSTVKAHVASLMRKLGARNRVEVAMWAHETG 213


>gi|229076566|ref|ZP_04209526.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229099785|ref|ZP_04230710.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229105944|ref|ZP_04236568.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229118847|ref|ZP_04248196.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228664648|gb|EEL20141.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228677518|gb|EEL31771.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228683674|gb|EEL37627.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228706599|gb|EEL58812.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|167753189|ref|ZP_02425316.1| hypothetical protein ALIPUT_01460 [Alistipes putredinis DSM 17216]
 gi|167659503|gb|EDS03633.1| hypothetical protein ALIPUT_01460 [Alistipes putredinis DSM 17216]
          Length = 203

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 1/157 (0%)

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                    I    +      ++ Q+ +R     L  +     +  G+      +   + 
Sbjct: 37  AVFDSFTEFIASGPERYFHYFAAMQVFMRHRTFFLENSHKTILLGKGYSAQFARMRQIDI 96

Query: 139 LMLANEVIIEA-HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 ++ +           D     +  + AA  L+ RET  L L   G  +++IA++
Sbjct: 97  FGGEERLVHDLLCLRSEAPRPDHALPRQNGAPAANLLSVRETEVLTLIAQGLLNKQIADR 156

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L + + TV ++  +   KL   +    +  A+  GY+
Sbjct: 157 LQIGLTTVISHRRNIMQKLGVQSVAALVICAVSMGYV 193


>gi|29827472|ref|NP_822106.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29604571|dbj|BAC68641.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 235

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195
            ++A    + A     ++I +F+   +      R L   TERE   L L   G ++ EIA
Sbjct: 128 RVIAAGEALLAPAVTRRLIAEFVHRPEPSRPLRRTLDGVTEREREVLTLIACGLSNTEIA 187

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+L L + TV  ++     KL   +R Q +  A   G +
Sbjct: 188 ERLYLGIATVKTHVSHLLTKLATRDRAQLVIVAYESGLV 226


>gi|304413627|ref|ZP_07395071.1| DNA-binding HTH domain-containing protein invovled in quorum
           sensing [Candidatus Regiella insecticola LSR1]
 gi|304283718|gb|EFL92112.1| DNA-binding HTH domain-containing protein invovled in quorum
           sensing [Candidatus Regiella insecticola LSR1]
          Length = 252

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 55/210 (26%), Gaps = 27/210 (12%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS------------IQEETVI 98
           +  + N   D  ++       + D  +    + +    W              I      
Sbjct: 41  MRVISNRP-DWFEVYVRDRYQHIDPVIITALNRITSFPWDENIMINSDLKLPKIFNIVST 99

Query: 99  ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF---------LMLANEVIIEA 149
                    +       +G  F +    +    +    +          +    + +   
Sbjct: 100 NLQLIEVFSIAKKYNIISGYTFILHDCNNNLAVLSILMDDQTGNMLKEKIEKNKDKLQML 159

Query: 150 HGACYQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
               + ++          + K   S     + RE   L     G T  EIA   G+ + T
Sbjct: 160 LLNTHDILISLYKETHGAVCKNSESKKEKFSSRENEVLYWFSMGKTYSEIAIIFGIKLGT 219

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++G+   KL  +N   AI        I
Sbjct: 220 VKFHMGNIVKKLGVLNAKHAIRLGTESQLI 249


>gi|229521390|ref|ZP_04410809.1| DNA-binding response regulator LuxR family [Vibrio cholerae TM
           11079-80]
 gi|229341488|gb|EEO06491.1| DNA-binding response regulator LuxR family [Vibrio cholerae TM
           11079-80]
          Length = 216

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213

Query: 233 YI 234
            +
Sbjct: 214 LL 215


>gi|228903831|ref|ZP_04067946.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228855740|gb|EEN00285.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NR
Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176

Query: 222 IQAIAKAIRFGYI 234
           I+AI  A   G+I
Sbjct: 177 IEAITIAEEKGWI 189


>gi|239628083|ref|ZP_04671114.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518229|gb|EEQ58095.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 268

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 14/162 (8%)

Query: 77  LFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
           +    +   PII+         +  +  +  R    +  +  +   +       G +   
Sbjct: 85  VAWIFNTDQPIIYSDSDIVSNPVRENSLIYKRWMEPMGVYYSMGSTIVEHQIMFGSITLF 144

Query: 136 SEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCL 182
                            I+  H +    +     L K      ++      LTERE   +
Sbjct: 145 RSRDTSDFGEREIEILKILNRHLSASFSMRFPNGLKKNDKETDKSRMKRYGLTEREEEIM 204

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +L   G ++++I EKL +S +TV  ++ +   KLD VNR Q 
Sbjct: 205 ELIISGISNQQIGEKLFISENTVKKHINNLYRKLDVVNRSQL 246


>gi|71737969|ref|YP_274134.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257484378|ref|ZP_05638419.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289627275|ref|ZP_06460229.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650435|ref|ZP_06481778.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298486449|ref|ZP_07004509.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71558522|gb|AAZ37733.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298158926|gb|EFH99986.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320324828|gb|EFW80900.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329194|gb|EFW85191.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869470|gb|EGH04179.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330989303|gb|EGH87406.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331013208|gb|EGH93264.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 222

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     ++   +LT RE   L L   G+++ EI EKLG
Sbjct: 120 RVARGEEALNSTVSARLLRRMTERNTSGAALPESLTPRERQVLGLVAGGFSNREIGEKLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|326797312|ref|YP_004315132.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548076|gb|ADZ93296.1| transcriptional regulator, LuxR family [Marinomonas mediterranea
           MMB-1]
          Length = 254

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +   +    + +K SS    LT RE   L     G T+ EI+  LG+S +TV  ++ S  
Sbjct: 178 HSACSAASRIQRKSSSPINVLTSREREVLNWISSGKTNGEISMILGISPNTVKNHVASIL 237

Query: 214 VKLDAVNRIQAIAK 227
            KL+A NR+ A A 
Sbjct: 238 GKLNAPNRLAATAL 251


>gi|269795278|ref|YP_003314733.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097463|gb|ACZ21899.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 216

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLG 199
           +       + +   +    + +           +LT RE + ++ A  G  + +I+ +L 
Sbjct: 122 VMLSQTATRAVVQHVARAPRPAEPDPVLAQQVASLTPRERTIVKQAAQGLDNLQISRQLH 181

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S HTV  +LG A  KLD  +R Q +  A R G +
Sbjct: 182 ISPHTVKTHLGHAMAKLDVRDRTQMVVVAFRAGLV 216


>gi|229051023|ref|ZP_04194571.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229147892|ref|ZP_04276233.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228635542|gb|EEK92031.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228722332|gb|EEL73729.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|163839051|ref|YP_001623456.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952527|gb|ABY22042.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 158

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-----------ACYQVITDFLELFKKRSSAAR 172
           L     G+++ ++    +   +I  A G              Q+++       +      
Sbjct: 37  LRAGAAGFLLKSASAEEIVQAIITVATGGSVLAPEVTKTVIEQMLSASSRAEIRTPPGLA 96

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+  G G+T+++IA +LG++  TV  ++     KLD V+R+QA    +   
Sbjct: 97  ELTARELEVLRAVGAGWTNQQIANRLGIAETTVKTHVSRIFNKLDLVSRVQAAIFCVEHQ 156

Query: 233 Y 233
            
Sbjct: 157 L 157


>gi|296271341|ref|YP_003653973.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296094128|gb|ADG90080.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 228

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                +        LT RE   ++L  +GY+S+EIAE L +SV TV+ +  +   KL   
Sbjct: 152 LARARRGERVPDSVLTPREEEIVKLIAEGYSSKEIAETLQISVKTVDRHRANVLAKLGMR 211

Query: 220 NRIQAIAKAIRFGYI 234
           +R++    AIR G +
Sbjct: 212 DRLELTRYAIRAGLV 226


>gi|226305629|ref|YP_002765589.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184746|dbj|BAH32850.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 226

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 38/88 (43%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             A     Q +   LE     S     LT RE   L+    G ++ EIA K  +S  TV 
Sbjct: 129 ARATRRLLQHVGPLLEGSAPESQLPEELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVK 188

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++G    K  + +R+QA+  A + G +
Sbjct: 189 THVGRVLSKTHSRDRVQAVVFAFQIGLV 216


>gi|310640662|ref|YP_003945420.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245612|gb|ADO55179.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 214

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L +   +   +LT +E   L   G G  + EIA +L +S  TV  ++     KL   +R 
Sbjct: 133 LREDAGNLTDDLTPKEKEVLVELGQGACNREIASRLFISEFTVKKHVSQILAKLRLADRT 192

Query: 223 QAIAKAIRFGY 233
           QA   A   G 
Sbjct: 193 QAALYANAIGL 203


>gi|292558970|gb|ADE31971.1| Response regulator [Streptococcus suis GZ1]
          Length = 190

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     +    LT  E+  L+L  +G +++EIA +L LS  TV  Y+ S   KL A NR
Sbjct: 117 ELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENR 176

Query: 222 IQAIAKAIRFGYI 234
             A+  A   G++
Sbjct: 177 TAAVKVAQEKGWL 189


>gi|284046997|ref|YP_003397337.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951218|gb|ADB53962.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 223

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 17/160 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +     G     A +A  V         ++           +    ++
Sbjct: 57  LDVHLPDGGGLAVLEAFRGIAGAPAFLALSVSDAAEDVVPMVRAGARGYVTKTIDTPALL 116

Query: 148 EA-------------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           +A               A + +        ++       LT RE   L     GY  + I
Sbjct: 117 DAIVRVRQGEPYFSPRLAAFVLQAFSAPAEEQADDELDQLTPREREVLHHLARGYAYKRI 176

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +LG+S  TV  ++GS   KL   +R +    A   G +
Sbjct: 177 AARLGISPRTVETHVGSVLRKLQLSSRHELSHWAASRGLV 216


>gi|271963063|ref|YP_003337259.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506238|gb|ACZ84516.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAG 186
               +  +  ++   + ++   G   ++I ++    K    +     LT+RE   L L G
Sbjct: 104 EPAELIQAVRVVADGDALLSP-GVTRRLIAEYASRAKPPHPSQDLGMLTDREREVLSLVG 162

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T++EIA KL +S  T   ++    +KL A +R Q +  A   G +
Sbjct: 163 TGMTNDEIAGKLFMSPATAKTHVSRTMMKLHARDRAQLVVIAYESGLV 210


>gi|228955601|ref|ZP_04117601.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229193605|ref|ZP_04320549.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228589910|gb|EEK47785.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228804077|gb|EEM50696.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|297560931|ref|YP_003679905.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845379|gb|ADH67399.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 217

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           +G              V   +    L +  +     A +       E    R      LT
Sbjct: 102 SGFLIKDSDPQEMLAAVRAAARGEALLSPSVTRRVVAAFV----SREPGGGRVPRLEVLT 157

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ERE   + L G+G ++EEIA +L +S  T   ++  A VKL A +R Q +  A R G +
Sbjct: 158 EREREVVGLVGEGLSNEEIAARLVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGLV 216


>gi|317404098|gb|EFV84550.1| DNA-binding response regulator [Achromobacter xylosoxidans C54]
          Length = 218

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII---EAHGACYQ 155
           +L+ +L       A +   +          +              + I+   +A      
Sbjct: 79  ELTAQLHERYPQIAVLVLSMHDNAEYMVQAVRAGARGYLLKDEPAQEILAAIDAVMTGRT 138

Query: 156 VITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             +  + L   + S+ A  LT+RE   L+    G+ +++IA+ LGLSV TV  +  +   
Sbjct: 139 YFSAAVSLRLSQASAPATLLTQRERDVLRHIASGHANKQIAQALGLSVRTVETHRLNIKR 198

Query: 215 KLDAVNRIQAIAKAIRF 231
           KL    + + I  A+  
Sbjct: 199 KLGIDGQAELIKYAVEN 215


>gi|311894021|dbj|BAJ26429.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 41/134 (30%), Gaps = 4/134 (2%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +    H    +            V               L  
Sbjct: 84  FDLDEYAHAALRAGASGFLLKDAHPEELLAGVRAVAGGDAVVAPAITRRLLDAYAHHLPA 143

Query: 164 FK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                         LT RE   L     G+T+ EIA +L LS  TV  ++G    K+ A 
Sbjct: 144 RPPGPVDDDPRLAALTGREREILLAVARGWTNGEIAARLVLSESTVKTHVGRVLAKIGAR 203

Query: 220 NRIQAIAKAIRFGY 233
           +R+QA+  A   G 
Sbjct: 204 DRVQAVILAYDLGL 217


>gi|261210994|ref|ZP_05925284.1| DNA-binding response regulator LuxR family [Vibrio sp. RC341]
 gi|260839969|gb|EEX66569.1| DNA-binding response regulator LuxR family [Vibrio sp. RC341]
          Length = 212

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 150 PLSRREEAILRLVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 209

Query: 233 YI 234
            +
Sbjct: 210 LL 211


>gi|257057781|ref|YP_003135613.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587653|gb|ACU98786.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 226

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERETS 180
           L     GYV+  +E   +A  V     G  +        L ++ +S      +LT RE  
Sbjct: 109 LSAGAAGYVLKDAEPEEVATAVRAAVKGEVHLDAAVARLLARRMASPQVGVTSLTARERD 168

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L G G ++ EIA++L +S  T   ++ +   KL   +R QA   AIR G +
Sbjct: 169 ILVLVGQGLSNREIADRLVISERTARTHVSNVLSKLQLSSRTQAALLAIREGLV 222


>gi|228968483|ref|ZP_04129471.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791189|gb|EEM38803.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NR
Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176

Query: 222 IQAIAKAIRFGYI 234
           I+AI  A   G+I
Sbjct: 177 IEAITIAEEKGWI 189


>gi|284032715|ref|YP_003382646.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812008|gb|ADB33847.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 217

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 11/136 (8%)

Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHKNGYVI----FTSEFLMLANEVIIEAHGACYQVIT 158
             +         AG + F ++                 + ++  +               
Sbjct: 85  FDLDEYAFAGLRAGASGFLLKDASADEVLHAIRAVHAGDSVLAPSTTRRMLD------HL 138

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                  + S   + LT RE   L     G+++ E A++L LS  TV  ++     KL+ 
Sbjct: 139 PTARAGHEASPLLQRLTARERDVLLEIAHGHSNAETAQRLFLSEATVKTHVAHLLAKLEV 198

Query: 219 VNRIQAIAKAIRFGYI 234
            +R+QA+  A   G +
Sbjct: 199 RDRVQAVIFAYENGLV 214


>gi|148981530|ref|ZP_01816447.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145960831|gb|EDK26164.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 212

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            S    L+ RE + L+L   G +S+E+A+ L +S  TV  +  +   KLD  +  +    
Sbjct: 145 PSVKNPLSRREEAVLKLVAKGESSKEVAKALNISYRTVETHRQNIKHKLDIHSTAELAKY 204

Query: 228 AIRFGYI 234
           A+  G +
Sbjct: 205 AVNCGLV 211


>gi|72161171|ref|YP_288828.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71914903|gb|AAZ54805.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 221

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   + L G+G ++EEIA +L LS  TV  ++  A  KL   +R Q +  A   G 
Sbjct: 155 LTDREREVVALVGEGLSNEEIAARLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETGL 214

Query: 234 I 234
           +
Sbjct: 215 V 215


>gi|54027465|ref|YP_121707.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018973|dbj|BAD60343.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 222

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 151 GACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           G    V+ ++  +    +         LTERET  L++   G ++++IA +LGLS  TV 
Sbjct: 135 GLAGLVLGEYRRMASAPARPDEPHRPALTERETEVLRMVAKGLSAKQIAARLGLSHRTVE 194

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ +   KL   NR++    AI  G 
Sbjct: 195 NHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|260768300|ref|ZP_05877234.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260616330|gb|EEX41515.1| transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 212

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G++S++IA  L +S  TV  +  +   KLD  +  +    A + G
Sbjct: 150 PLSRREEAVLKLVAQGHSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAHYASQRG 209

Query: 233 YI 234
            +
Sbjct: 210 LL 211


>gi|254000165|ref|YP_003052228.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|253986844|gb|ACT51701.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
          Length = 232

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              LE   +++     LT+RE   LQ   DG  ++ IA KLG+S  TV  ++     KL 
Sbjct: 158 QALLEPRTRKADDDVALTDREQEILQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLK 217

Query: 218 AVNRIQAIAKAIR 230
             +R++A   A R
Sbjct: 218 LTSRLEAAVWAHR 230


>gi|228949073|ref|ZP_04111345.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810646|gb|EEM56995.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 189

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|222081319|ref|YP_002540682.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725998|gb|ACM29087.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 275

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                       +   +E   +AH A   V T       +  +  RNL+ RE S L+L  
Sbjct: 169 GDAIICPDAGSDVFDVHE--HDAHMAAAPVQTT------RIVNGVRNLSPREKSILKLVM 220

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            G ++++IA +L ++  TV  ++ +   K+D  NR QA   A+
Sbjct: 221 GGESNKQIARRLEITESTVKVHIKTILRKIDVRNRTQAAIWAM 263


>gi|149914980|ref|ZP_01903509.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp.
           AzwK-3b]
 gi|149811168|gb|EDM71005.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp.
           AzwK-3b]
          Length = 219

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L   +      LT RE + L     G +++++A  L +SV TV  +  +   KL   + 
Sbjct: 139 SLEPYQRPGREQLTNREQTILLQLAQGKSNKDVAHTLDISVRTVETHRKNIKRKLGISST 198

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 199 AGLTRYALEHGVL 211


>gi|54026217|ref|YP_120459.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017725|dbj|BAD59095.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 230

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 18/140 (12%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                ++G L        L  A     VR       ++       +L+            
Sbjct: 102 ALRAGAAGFLLKDSPAEDLIRA-----VRTVAGGGAWLDPAVTGRVLS------------ 144

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                      +R      LT RE   L+L G G  + EIA +LG+S  TV +++G    
Sbjct: 145 -AYRTVRPAPARRDDRLAELTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFG 203

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KLD  +R  AI  A   G +
Sbjct: 204 KLDLRDRAAAIVFAFDHGVV 223


>gi|297202549|ref|ZP_06919946.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148137|gb|EFH28852.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 910

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 9/166 (5%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF-----AGIAFPVRLGFHKNGY 131
           L    S   P  W                 R+   L         G   P R    +   
Sbjct: 733 LLRAESADTPDHWCEAITAVEPLGRPFDLARVRHRLAEALLSVPGGAEQPERDRATELLR 792

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLE----LFKKRSSAARNLTERETSCLQLAGD 187
           +   +   + A  +         +           L +     +  LT RE   L+L   
Sbjct: 793 LAHAAAEHLGARPLADAVTLLAQRARLALTAVVPVLDRSDPLRSLGLTGRERDVLRLVTL 852

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G T+ +IAE+L +S  T + ++ +   KL    R +A A A R G 
Sbjct: 853 GRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRLGL 898


>gi|256376928|ref|YP_003100588.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921231|gb|ACU36742.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G         +L   V  E  G   +  T      +    A   L+ RE   L+L  DG
Sbjct: 112 EGVRTVARGEALLDPSVTRELIG---RYATRVRPREEPVHGALAGLSPRELEVLRLVADG 168

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIA +L LS  TV  Y+     KLD  +R+QA+  A R G +
Sbjct: 169 RSNSEIAVELVLSPETVKTYVSRLLAKLDLRDRVQAVVPAHRTGLV 214


>gi|330969335|gb|EGH69401.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 909

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLEL 163
                 LL     + P   G     +     E     +E +++         ++      
Sbjct: 778 RDEARALLLR---SLPAASGGALMPFKALLGEHPEWLHEQLVQLPPCRVQAALLEKLPAC 834

Query: 164 FKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                 AA     L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    
Sbjct: 835 CTPSPEAAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVER 894

Query: 221 RIQAIAKAIRFGYI 234
           R QA+A+A   G +
Sbjct: 895 RTQAVARAKTLGLL 908


>gi|254390623|ref|ZP_05005837.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812218|ref|ZP_06770861.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440627|ref|ZP_08215361.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704324|gb|EDY50136.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324817|gb|EFG06460.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 228

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                +        ++R++A       LT RE   L L   G +++EI E+L +S  TV 
Sbjct: 136 LIARFLAQGGDGADEQRAAAYGERLNALTGREREVLVLVAGGLSNDEIGERLDVSPLTVK 195

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  A  KL A +R Q +  A   G +
Sbjct: 196 THVNRAMAKLGARDRAQLVVTAYESGLV 223


>gi|183983931|ref|YP_001852222.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
 gi|183177257|gb|ACC42367.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
          Length = 218

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 15/220 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    FA+      +   +R+  I +     +D        ++   
Sbjct: 12  VDDHPIWRDAVARDLSDDGFAVVATADGVATAQRRAAIVKPDVVVMDMRLADGDGVQA-- 69

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                             +   +  +    +   ++ G     G              V 
Sbjct: 70  --TTEVLKVSPA----TRVLVLSASDEREDVLEAVKAGA---TGYLVKSASKAELADAVR 120

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
            T+    +    +       Y+ I    +  + R     +LTERET  L+    G ++++
Sbjct: 121 ATAAGRAVFTPSLAGLVLGEYRRIAQTADSSQDRP----SLTERETEILRYVAKGLSAKQ 176

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IAEKL LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 177 IAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216


>gi|116249841|ref|YP_765679.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254489|emb|CAK05563.1| putative GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 260

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
              ++ L+L +   SA   LT RE   L L   G  ++ IA+KL LS +TV  ++ +   
Sbjct: 173 AARSNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYK 229

Query: 215 KLDAVNRIQAIAK 227
           K++  NR +A ++
Sbjct: 230 KMNVRNRTEAASR 242


>gi|17987865|ref|NP_540499.1| transcriptional regulatory protein DEGU [Brucella melitensis bv. 1
           str. 16M]
 gi|23501247|ref|NP_697374.1| LuxR family DNA-binding response regulator [Brucella suis 1330]
 gi|148559651|ref|YP_001258379.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC
           25840]
 gi|161618323|ref|YP_001592210.1| two component LuxR family transcriptional regulator [Brucella canis
           ATCC 23365]
 gi|163842630|ref|YP_001627034.1| two component LuxR family transcriptional regulator [Brucella suis
           ATCC 23445]
 gi|225626863|ref|ZP_03784902.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo]
 gi|225851885|ref|YP_002732118.1| LuxR family two component transcriptional regulator [Brucella
           melitensis ATCC 23457]
 gi|254701158|ref|ZP_05162986.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 5 str. 513]
 gi|254703704|ref|ZP_05165532.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 3 str. 686]
 gi|254707920|ref|ZP_05169748.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M163/99/10]
 gi|254709500|ref|ZP_05171311.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis B2/94]
 gi|254713082|ref|ZP_05174893.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M644/93/1]
 gi|254716565|ref|ZP_05178376.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M13/05/1]
 gi|256030994|ref|ZP_05444608.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M292/94/1]
 gi|256044064|ref|ZP_05446975.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060484|ref|ZP_05450655.1| two component transcriptional regulator, LuxR family protein
           [Brucella neotomae 5K33]
 gi|256112861|ref|ZP_05453782.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|256159043|ref|ZP_05456876.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M490/95/1]
 gi|256254397|ref|ZP_05459933.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti B1/94]
 gi|256264603|ref|ZP_05467135.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368799|ref|YP_003106305.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260168126|ref|ZP_05754937.1| DNA-binding response regulator, LuxR family protein [Brucella sp.
           F5/99]
 gi|260563426|ref|ZP_05833912.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260567044|ref|ZP_05837514.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|261218363|ref|ZP_05932644.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261221562|ref|ZP_05935843.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94]
 gi|261315409|ref|ZP_05954606.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317025|ref|ZP_05956222.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261320788|ref|ZP_05959985.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324478|ref|ZP_05963675.1| two component LuxR family transcriptional regulator [Brucella
           neotomae 5K33]
 gi|261751695|ref|ZP_05995404.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261754348|ref|ZP_05998057.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261757583|ref|ZP_06001292.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265988062|ref|ZP_06100619.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265990479|ref|ZP_06103036.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994307|ref|ZP_06106864.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265997525|ref|ZP_06110082.1| two component LuxR family transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|294851727|ref|ZP_06792400.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|306842393|ref|ZP_07475048.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2]
 gi|306844978|ref|ZP_07477559.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1]
 gi|17983597|gb|AAL52763.1| two-component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23347130|gb|AAN29289.1| DNA-binding response regulator, LuxR family [Brucella suis 1330]
 gi|148370908|gb|ABQ60887.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC
           25840]
 gi|161335134|gb|ABX61439.1| two component transcriptional regulator, LuxR family [Brucella
           canis ATCC 23365]
 gi|163673353|gb|ABY37464.1| two component transcriptional regulator, LuxR family [Brucella suis
           ATCC 23445]
 gi|225618520|gb|EEH15563.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo]
 gi|225640250|gb|ACO00164.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis ATCC 23457]
 gi|255998957|gb|ACU47356.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260153442|gb|EEW88534.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156562|gb|EEW91642.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260920146|gb|EEX86799.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94]
 gi|260923452|gb|EEX90020.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293478|gb|EEX96974.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296248|gb|EEX99744.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300458|gb|EEY03955.1| two component LuxR family transcriptional regulator [Brucella
           neotomae 5K33]
 gi|261304435|gb|EEY07932.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737567|gb|EEY25563.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261741448|gb|EEY29374.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261744101|gb|EEY32027.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262551993|gb|EEZ07983.1| two component LuxR family transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|262765420|gb|EEZ11209.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001263|gb|EEZ13838.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094966|gb|EEZ18674.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660259|gb|EEZ30520.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294820316|gb|EFG37315.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|306274610|gb|EFM56399.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1]
 gi|306287481|gb|EFM58951.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2]
 gi|326408384|gb|ADZ65449.1| LuxR family two component transcriptional regulator [Brucella
           melitensis M28]
 gi|326538098|gb|ADZ86313.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis M5-90]
          Length = 213

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V    LE  +KRS     L+ RE   L L  +G ++ EIA +LG+S  TV  +  
Sbjct: 129 YFSSGVSEALLESGEKRS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +       AI    
Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208


>gi|331696783|ref|YP_004333022.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951472|gb|AEA25169.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 892

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +  E          +     L        P  L F +   ++            + +  G
Sbjct: 750 LTAELRRPDDADRILEEALDLALPGHYRQP-FLQFGEARTLLEAHRGCPAHRRFVADLLG 808

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                  D   +       A  L++RE   L       T+ EI  ++ +SV+TV  +L S
Sbjct: 809 ------ADDAPVTGAAGPGAEVLSDREVEVLGHLAAMLTAAEIGAEMFVSVNTVKTHLKS 862

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R QA+A+ +  G +
Sbjct: 863 IYRKLGVSSRRQAVARGVELGIV 885


>gi|255008092|ref|ZP_05280218.1| putative transcriptional regulatory protein [Bacteroides fragilis
           3_1_12]
 gi|313145809|ref|ZP_07808002.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313134576|gb|EFR51936.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 225

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT  E   L+    G T++EIA +  LS HT+N++  +   KL   N  +AI  A+R G 
Sbjct: 158 LTPTEKIILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEAIKYAMRAGI 217

Query: 234 I 234
           +
Sbjct: 218 V 218


>gi|284029334|ref|YP_003379265.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808627|gb|ADB30466.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 228

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT RE   + L   G +++ IAE L +S  T   ++  A  KL   +R Q +  A+R 
Sbjct: 163 DSLTSREREVVTLVARGLSNDVIAEHLFISPMTAKTHVNRAMSKLHVSDRAQLVVAALRA 222

Query: 232 GYI 234
           G +
Sbjct: 223 GLL 225


>gi|260906661|ref|ZP_05914983.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 216

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 155 QVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           +VI   +   +  + AA     LT RE   L L   G ++ EIA +L +   TV  ++ +
Sbjct: 132 RVIERSVRSPESTTPAAPELELLTGRELEVLHLVAGGLSNSEIAGRLFVGEATVKTHVSN 191

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLD  +RI  +  A + G +
Sbjct: 192 LLTKLDIRDRIHVVIFAYQNGVV 214


>gi|259419008|ref|ZP_05742925.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
 gi|259345230|gb|EEW57084.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
          Length = 214

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  ++   LT RE + L     G +++E+A  L +SV TV  +  +   KL   + 
Sbjct: 135 SLSPQSHTSREALTGREQTILLELAQGKSNKEVALTLDISVRTVETHRKNIKRKLGISST 194

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 195 AGLTRYALEHGVL 207


>gi|229033988|ref|ZP_04188939.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728327|gb|EEL79352.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 189

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 226

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L   G ++ EI ++L LS  TV  Y+ S   K +  NR + +  A+   
Sbjct: 164 ELTAREKQVLELLAQGLSNVEIGQQLHLSPRTVEKYVSSLLRKTETNNRAELVRFALEHH 223

Query: 233 YI 234
            +
Sbjct: 224 LV 225


>gi|300728575|ref|ZP_07061933.1| transcriptional regulator [Prevotella bryantii B14]
 gi|299774144|gb|EFI70778.1| transcriptional regulator [Prevotella bryantii B14]
          Length = 213

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
               + + +    C++  T+ L   + +   A NLT  E   L+    G T++EIA +  
Sbjct: 113 EAIQDAVQKRRYICHRA-TEILIDSQLKEEPATNLTSTEIEILRSIAQGKTTKEIAAERY 171

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            S+HT+N +  +   KL      +A+  A R G +
Sbjct: 172 SSIHTINTHRKNIFKKLKVNTAHEAVKYAFRAGLV 206


>gi|296394121|ref|YP_003659005.1| LuxR family two component transcriptional regulator [Segniliparus
           rotundus DSM 44985]
 gi|296181268|gb|ADG98174.1| two component transcriptional regulator, LuxR family [Segniliparus
           rotundus DSM 44985]
          Length = 213

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  +  +   + A   +++      + +   L   K        LTE+E   L L G+G 
Sbjct: 105 GMDLVAAVRAVGAGRSLLD--NRAAEALIRQLRAGKPEPGPLAGLTEQERVLLDLIGEGL 162

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           T+ +IA+++ L+  TV  Y+     KL    R QA   A+  G
Sbjct: 163 TNRQIAQRMFLAEKTVRNYVSRLLGKLGVERRTQAAVIAVSGG 205


>gi|294636980|ref|ZP_06715302.1| putative csgAB operon transcriptional regulatory protein
           [Edwardsiella tarda ATCC 23685]
 gi|291089808|gb|EFE22369.1| putative csgAB operon transcriptional regulatory protein
           [Edwardsiella tarda ATCC 23685]
          Length = 214

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
                +  E            +    L    I   V        +    +       ++ 
Sbjct: 61  FDASLLDAEQAQ--RDFWLRTIFHHSLTSRIILINVHRQDLALRWYRHANIIAAFPAQMH 118

Query: 147 IE--AHGACYQVITDFLELFK------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +    H     ++              +    +  LT RE   ++    G ++++I++ L
Sbjct: 119 LRILLHRLRALLVLPMQSSEPVGNRVLRARRPSLPLTLRELEVMKAMQQGASNQDISQML 178

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +S +TV  ++ +   K+   NR QA+  A
Sbjct: 179 YISENTVRTHIYNIFKKIAVKNRTQAVKWA 208


>gi|291457263|ref|ZP_06596653.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
 gi|291381098|gb|EFE88616.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
          Length = 227

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A +L +S+ TV  ++ S   KL   NR +    A   
Sbjct: 165 DRLSAREQEVMRLIARGYTYKEVAVELFISIKTVETHVSSVLRKLQLSNRTELTRWAADR 224

Query: 232 GYI 234
             +
Sbjct: 225 RIV 227


>gi|328543741|ref|YP_004303850.1| Two component transcriptional regulator, LuxR family [polymorphum
           gilvum SL003B-26A1]
 gi|326413485|gb|ADZ70548.1| Two component transcriptional regulator, LuxR family [Polymorphum
           gilvum SL003B-26A1]
          Length = 232

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDF-LELFKKRSSAARNLT 175
           +R+G             +  A   ++  H          ++ +  L    +    A  LT
Sbjct: 112 IRVGAMGYILKDAFPNDIAAAVHDLVRGHSPISASIARYIVRNAQLPAGDEPCEPAIRLT 171

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L     GY   EIA +LG+S  TV  Y+ +   KL   NR +A+ +A++ G I
Sbjct: 172 PREADILWGIAKGYRYAEIAAQLGISPQTVTGYIKTIYRKLHVTNRGEAVFEAVQQGLI 230


>gi|302545854|ref|ZP_07298196.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463472|gb|EFL26565.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            +    + ++        +     +      +A   LT RE   + LA  G ++ +IA+ 
Sbjct: 118 RVAARGDALLAPSITRKLIHRYVTQPLPTTGAALEELTSREREAVALAARGLSNSQIADH 177

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +S  T   ++  A  KL A +R Q +  A   G +
Sbjct: 178 MVISPMTAKTHINRAMTKLHARDRAQLVVFAYESGLV 214


>gi|223937115|ref|ZP_03629022.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894137|gb|EEF60591.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S    +L+ RE + L     G T + IA  LG+S+ T+  +L     KL   +R +A+AK
Sbjct: 144 SPTEAHLSPREQNVLDCLAKGMTYKAIACDLGISIETIRTHLKRVYQKLHVQSRTEAVAK 203

Query: 228 AIRF 231
            +R 
Sbjct: 204 YMRR 207


>gi|54022870|ref|YP_117112.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014378|dbj|BAD55748.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 211

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 36/123 (29%), Gaps = 3/123 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +G         + +  +   A                     
Sbjct: 91  RAGARGYVTKTISGAELADGIRRVAGGDAVFSPRL---AGFVLDSFTGRSPVPEPPLDPE 147

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE L +SV TV  +  +   K    NR      A R
Sbjct: 148 LDSLTPRELEVLRLLARGYTYREIAETLFISVKTVETHASNVLRKTQQSNRNALTRWAHR 207

Query: 231 FGY 233
              
Sbjct: 208 RRI 210


>gi|28899484|ref|NP_799089.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094736|ref|ZP_05891637.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095423|ref|ZP_05905792.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125607|ref|ZP_05776200.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|28807720|dbj|BAC60973.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087209|gb|EFO36904.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093073|gb|EFO42768.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308111203|gb|EFO48743.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
          Length = 214

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    + A  +LT RE   L+    G ++ ++AE+L +S  T+ ++L     KL   NR+
Sbjct: 143 INTHTAPATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRV 202

Query: 223 QAIAKA 228
           QAIA A
Sbjct: 203 QAIAWA 208


>gi|262401518|ref|ZP_06078085.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262352233|gb|EEZ01362.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 214

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
           RL    L   G    +       G++       ++  +  +  H +   +          
Sbjct: 89  RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSNQLLHYYRYAFQTH 147

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           ++ A  +LT RE   L+    G ++ +IAE L +S  TV ++L     KL+  NR++AIA
Sbjct: 148 QTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207

Query: 227 K 227
            
Sbjct: 208 W 208


>gi|220925456|ref|YP_002500758.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950063|gb|ACL60455.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 238

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +   A   LTERE   L     G +++ IA +L ++  TV  ++ S   K    NR 
Sbjct: 158 AAARGLGANETLTEREVEILAYLAAGLSNKLIARRLSIAEATVKIHVKSILRKTGLQNRT 217

Query: 223 QAIAKAIRFGY 233
           QA     R G 
Sbjct: 218 QAAIWTHRHGI 228


>gi|218663384|ref|ZP_03519314.1| probable two-component response regulator protein [Rhizobium etli
           IE4771]
          Length = 178

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+ + L      +S   +LT RE   + L   G +++ I  +L L   TV  ++  
Sbjct: 101 MSTKVMENSLH---DSASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 157

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL   NR +A  +    
Sbjct: 158 ILSKLGVSNRTEAALQWRER 177


>gi|254381656|ref|ZP_04997020.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194340565|gb|EDX21531.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 221

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 17/165 (10%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTS 136
           P+    +     +    + + RL       A +              LG    GY+   +
Sbjct: 56  PVDVVLMDLRMPVMDGTETTRRLAEEHPEVAVVVLTTFADDESILGALGAGARGYLTKNA 115

Query: 137 EFLMLANEVIIEAHGAC---YQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDG 188
               +A  +   A G      +V    L                +LT RE   L L G G
Sbjct: 116 GRQDIARAIRAAAAGQSVLDREVQDRLLVTVRTRAPAPARPLPEDLTPREREVLALIGQG 175

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             +  IA++L +S  TV  ++ +   K    +R  A+ +AI  G 
Sbjct: 176 LPNRAIAQRLFVSEATVKTHINNLFAKAGIRDRADAVRRAIAAGL 220


>gi|62289334|ref|YP_221127.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|82699262|ref|YP_413836.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023586|ref|YP_001934354.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|237814824|ref|ZP_04593822.1| LuxR family DNA-binding response regulator [Brucella abortus str.
           2308 A]
 gi|254696773|ref|ZP_05158601.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729682|ref|ZP_05188260.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 4
           str. 292]
 gi|260545913|ref|ZP_05821654.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260757346|ref|ZP_05869694.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761170|ref|ZP_05873513.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|62195466|gb|AAX73766.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1
           str. 9-941]
 gi|82615363|emb|CAJ10326.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Brucella melitensis biovar Abortus 2308]
 gi|189019158|gb|ACD71880.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|237789661|gb|EEP63871.1| LuxR family DNA-binding response regulator [Brucella abortus str.
           2308 A]
 gi|260097320|gb|EEW81195.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260667664|gb|EEX54604.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671602|gb|EEX58423.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 213

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V    LE  +K+S     L+ RE   L L  +G ++ EIA +LG+S  TV  +  
Sbjct: 129 YFSSGVSEALLESGEKKS---EGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRK 185

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +       AI    
Sbjct: 186 NIKKKLGIASTAGLTRYAIENRL 208


>gi|119358450|ref|YP_913094.1| two component LuxR family transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355799|gb|ABL66670.1| two component transcriptional regulator, LuxR family [Chlorobium
           phaeobacteroides DSM 266]
          Length = 203

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+    G TS +IA +L +S  TV  +      KL+          A   G
Sbjct: 142 QLTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQHIMEKLNIRTATGLAGYAREHG 201

Query: 233 YI 234
            I
Sbjct: 202 LI 203


>gi|319949743|ref|ZP_08023770.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
 gi|319436589|gb|EFV91682.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
          Length = 226

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 34/124 (27%), Gaps = 1/124 (0%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLELFKKRSS 169
                  +   +      +          + +  +                         
Sbjct: 102 RAGARGYVTKTITGDDLADAVRRVADGDAVFSPRLAGFVLDAFARAAPGPEERGEPVHDP 161

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +LT RE   L+L   GYT  EIAE+L +SV TV  +  +   K    NR      A 
Sbjct: 162 EVDSLTPREKEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNRHALTRWAQ 221

Query: 230 RFGY 233
               
Sbjct: 222 SRHL 225


>gi|312128575|ref|YP_003993449.1| LuxR family transcriptional regulator [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778594|gb|ADQ08080.1| transcriptional regulator, LuxR family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 68

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RE   ++L  +G T++EIA  L +S  TV  Y+ +  +KL+  +R + IA 
Sbjct: 5   KLSYREREIVKLIAEGMTNKEIAVILNISEKTVKTYVKNIMLKLEVDSRYKIIAW 59


>gi|290510245|ref|ZP_06549615.1| monoamine regulon transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289776961|gb|EFD84959.1| monoamine regulon transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 227

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 12/220 (5%)

Query: 10  KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           K+S    +  R L  I   I   +   Y +N+ L     +     LHN   ++       
Sbjct: 6   KASRNDAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPESYILHNISDNTHQQYLE- 59

Query: 69  IETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                D  L  HF+     +   +     + + +                    +R    
Sbjct: 60  NFQPLDPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERR 116

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               +      +  ++E    A      V     +  ++       LT +E   + +  +
Sbjct: 117 IIAGISLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEDDDLPAILTAKEREIVGMVRE 175

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G +++ IA +L +S+ TV  +L +   K + VNR + +++
Sbjct: 176 GASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215


>gi|238060047|ref|ZP_04604756.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237881858|gb|EEP70686.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 264

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 33/83 (39%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               QV+T       +       LT RE   L+    G T+  IA + GLS  TV   L 
Sbjct: 180 RVGPQVLTTLQRQPVELPPPFDRLTPRERDILRHLATGETNARIARRFGLSEKTVRNQLS 239

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +R+QA   A   G 
Sbjct: 240 AVFAKLGVTDRVQAALLARDAGL 262


>gi|304437977|ref|ZP_07397921.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368931|gb|EFM22612.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 212

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 31/76 (40%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            F    +        LT RE         GYT  EIAE+L LSV TV+ +      KL  
Sbjct: 136 MFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAERLHLSVKTVDTHKKHIYEKLHC 195

Query: 219 VNRIQAIAKAIRFGYI 234
             R   +  A+R G +
Sbjct: 196 SRRSDLVTLALRNGLL 211


>gi|254884986|ref|ZP_05257696.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|319640388|ref|ZP_07995112.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|254837779|gb|EET18088.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|317387991|gb|EFV68846.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 256

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            A  LT RE   L+L   G+ S+EIA+KL +S+HTV+ +  +   KL   N ++AI    
Sbjct: 191 PAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAIRLGQ 250

Query: 230 RFGYI 234
             G +
Sbjct: 251 ESGLL 255


>gi|116671544|ref|YP_832477.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116611653|gb|ABK04377.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 228

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITDFL 161
              L     +A  V         VI           ++   I +A         V +  L
Sbjct: 86  AALLGTTRFLALSVSDAAEDVVSVIRAGARGYVTKSISGTEISDAVLRVAGGDAVFSPRL 145

Query: 162 E---LFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               L    ++ A         L+ RE   ++L   GY+ +E+A++L +S+ TV  ++ +
Sbjct: 146 AGFVLDAFGTAPADIAGDELDRLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSA 205

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R +    A     +
Sbjct: 206 VLRKLQLSSRHELTKWAAERRLL 228


>gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 215

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT  E   +Q    G  + EIA++L +S  T+ +++ +   K    NR +    AI  
Sbjct: 155 LTPTERKVVQFVARGMANREIAQQLNVSQRTIESHVSNMLGKTGLHNRTELARWAIEN 212


>gi|298249976|ref|ZP_06973780.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547980|gb|EFH81847.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 224

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 151 GACYQVITDFLELFKKRSSAARN----------LTERETSCLQLAGDGYTSEEIAEKLGL 200
               +++   L    +    +            LTERE + L     G  S+EIA+ LG+
Sbjct: 131 LLQPEIMARILAQTHRSVPNSSPGAPSGNSTVELTERERAILIAVAHGERSKEIAQHLGV 190

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV A+L +   KL+  +R  A+A A+  G +
Sbjct: 191 SERTVKAHLTNIYTKLNVDSRASAVASALERGLL 224


>gi|229164302|ref|ZP_04292233.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619145|gb|EEK76040.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 189

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|218462212|ref|ZP_03502303.1| probable two-component response regulator protein [Rhizobium etli
           Kim 5]
          Length = 180

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+ + L      +S   +LT RE   + L   G +++ I  +L L   TV  ++  
Sbjct: 103 MSTKVMENSLH---DSASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 159

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL   NR +A  +    
Sbjct: 160 ILSKLGVSNRTEAALQWRER 179


>gi|168700050|ref|ZP_02732327.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 219

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE    +L   G+ ++EIA +L LSV TV  Y   A  KL   +R + ++ A + G
Sbjct: 155 ELSEREAEVARLTAAGHGNKEIAARLELSVKTVETYRARALEKLGLKSRAELVSYAFQQG 214

Query: 233 YI 234
           ++
Sbjct: 215 WL 216


>gi|150003225|ref|YP_001297969.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|294776005|ref|ZP_06741501.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|149931649|gb|ABR38347.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|294450143|gb|EFG18647.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
          Length = 256

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            A  LT RE   L+L   G+ S+EIA+KL +S+HTV+ +  +   KL   N ++AI    
Sbjct: 191 PAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAIRLGQ 250

Query: 230 RFGYI 234
             G +
Sbjct: 251 ESGLL 255


>gi|134103787|ref|YP_001109448.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005755|ref|ZP_06563728.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916410|emb|CAM06523.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             + +       A  LT+RET  L+    G T+ +IA KL +S  TV  ++ S   KL  
Sbjct: 141 RRMAVTPDSGDRAPQLTDRETEVLRQVAKGLTARQIANKLVISHRTVENHVQSTLRKLQL 200

Query: 219 VNRIQAIAKAIRFGY 233
            NR++    AI  G 
Sbjct: 201 HNRVELARYAIEHGL 215


>gi|154251602|ref|YP_001412426.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1]
 gi|154155552|gb|ABS62769.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1]
          Length = 921

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            ++ EA      ++ D         S      LT+RE   L+L  +G++++ +A++L LS
Sbjct: 828 RLLSEAGEFAPALMPDAGHDENDDISPHLLEELTDREREILRLVSNGFSNKALADRLSLS 887

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +TV  +L +   KL   NR+QA++ A  FG I
Sbjct: 888 TNTVKWHLRNIFEKLQIGNRMQAVSVARHFGLI 920


>gi|146306170|ref|YP_001186635.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
 gi|145574371|gb|ABP83903.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
          Length = 868

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                ++      L +  S+    L+ RE + LQL   G +++EIA++L +S+HTV  + 
Sbjct: 782 QSLHQRLFQPPPTLDEPASAGTALLSSRELAVLQLIAQGCSNQEIADRLFISLHTVKTHA 841

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
               VKL    R QA+A A  +G 
Sbjct: 842 RRINVKLGVQRRTQAVAMAKAYGL 865


>gi|327194559|gb|EGE61413.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 260

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
              + L+L +   SA   LT RE   L L   G  ++ IA+KL LS +TV  ++ +   K
Sbjct: 174 ARNNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKK 230

Query: 216 LDAVNRIQAIAK 227
           ++  NR +A ++
Sbjct: 231 MNVRNRTEAASR 242


>gi|229000138|ref|ZP_04159708.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007659|ref|ZP_04165252.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228753610|gb|EEM03055.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228759675|gb|EEM08651.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 189

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 43/94 (45%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            + ++                EL          L++RE   L LA +G T+ EIA+ L L
Sbjct: 96  PSEDLAAAIRNVMQGKREISPELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKTLYL 155

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV  Y+     KL+A NRI+AIA A   G+I
Sbjct: 156 SSGTVRNYISDVLTKLNAKNRIEAIAIAEEKGWI 189


>gi|50085580|ref|YP_047090.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
 gi|49531556|emb|CAG69268.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
          Length = 320

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             LT+RE         G T+++IAE L LS  TVN +L     KL   NR  A+A 
Sbjct: 255 PQLTQREAEVSHWLALGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAY 310


>gi|319937288|ref|ZP_08011695.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319807654|gb|EFW04247.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 67

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT+RE     L     T+++IAE+L +S  TV  ++ +   KL   +RIQA+ + I+ 
Sbjct: 5   LTKREKEIFTLLTFNKTTKQIAEELCISEKTVRNHISNVIQKLGVESRIQAVLELIKM 62


>gi|317476845|ref|ZP_07936088.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316907020|gb|EFV28731.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 217

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             QV        + R      LT+RE   L+   +G  ++EIA+ L +S +TV+ +    
Sbjct: 134 AEQVRNQMRRSDEGRR---EELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHL 190

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KLDA N    I  AI  G I
Sbjct: 191 LDKLDAKNVADLIMTAISRGII 212


>gi|271967312|ref|YP_003341508.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510487|gb|ACZ88765.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                +      + +        LT RE   ++L  +G +++EIAE L +SV TV+ +  
Sbjct: 133 AITALIRDYLQRVRQGERVPESILTPREEEVVKLIAEGNSAKEIAETLVISVKTVDRHRA 192

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R+     AIR G +
Sbjct: 193 NILQKLGMRDRLDLTRYAIRAGLV 216


>gi|77413329|ref|ZP_00789524.1| response regulator [Streptococcus agalactiae 515]
 gi|77160643|gb|EAO71759.1| response regulator [Streptococcus agalactiae 515]
 gi|319744307|gb|EFV96671.1| LuxR family DNA-binding response regulator [Streptococcus
           agalactiae ATCC 13813]
          Length = 196

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+E+E   L L   G TS+EIA  L LS  TV  Y  +   KL   NR++A+  A  
Sbjct: 133 SNPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 192

Query: 231 FGYI 234
             ++
Sbjct: 193 KDWL 196


>gi|77410614|ref|ZP_00786974.1| response regulator [Streptococcus agalactiae CJB111]
 gi|77163329|gb|EAO74280.1| response regulator [Streptococcus agalactiae CJB111]
          Length = 196

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+E+E   L L   G TS+EIA  L LS  TV  Y  +   KL   NR++A+  A  
Sbjct: 133 SNPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 192

Query: 231 FGYI 234
             ++
Sbjct: 193 KDWL 196


>gi|76797806|ref|ZP_00780071.1| response regulator [Streptococcus agalactiae 18RS21]
 gi|76586820|gb|EAO63313.1| response regulator [Streptococcus agalactiae 18RS21]
          Length = 186

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+E+E   L L   G TS+EIA  L LS  TV  Y  +   KL   NR++A+  A  
Sbjct: 123 SNPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 182

Query: 231 FGYI 234
             ++
Sbjct: 183 KDWL 186


>gi|25010373|ref|NP_734768.1| hypothetical protein gbs0299 [Streptococcus agalactiae NEM316]
 gi|76788230|ref|YP_329033.1| LuxR family transcriptional regulator [Streptococcus agalactiae
           A909]
 gi|77404997|ref|ZP_00782098.1| response regulator [Streptococcus agalactiae H36B]
 gi|23094725|emb|CAD45944.1| unknown [Streptococcus agalactiae NEM316]
 gi|76563287|gb|ABA45871.1| DNA-binding response regulator, LuxR family [Streptococcus
           agalactiae A909]
 gi|77176436|gb|EAO79204.1| response regulator [Streptococcus agalactiae H36B]
          Length = 196

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+E+E   L L   G TS+EIA  L LS  TV  Y  +   KL   NR++A+  A  
Sbjct: 133 SNPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 192

Query: 231 FGYI 234
             ++
Sbjct: 193 KDWL 196


>gi|15641290|ref|NP_230922.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586548|ref|ZP_01676334.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121730066|ref|ZP_01682473.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147674446|ref|YP_001216842.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153820380|ref|ZP_01973047.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153823763|ref|ZP_01976430.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153826597|ref|ZP_01979264.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|227081449|ref|YP_002810000.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229505135|ref|ZP_04394645.1| DNA-binding response regulator LuxR family [Vibrio cholerae BX
           330286]
 gi|229511193|ref|ZP_04400672.1| DNA-binding response regulator LuxR family [Vibrio cholerae B33]
 gi|229515653|ref|ZP_04405112.1| DNA-binding response regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229518312|ref|ZP_04407756.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC9]
 gi|229529641|ref|ZP_04419031.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           12129(1)]
 gi|229608155|ref|YP_002878803.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           MJ-1236]
 gi|254286624|ref|ZP_04961580.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|254848401|ref|ZP_05237751.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297578869|ref|ZP_06940797.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498631|ref|ZP_07008438.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9655763|gb|AAF94436.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549227|gb|EAX59259.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121628186|gb|EAX60711.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|126509076|gb|EAZ71670.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126518710|gb|EAZ75933.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146316329|gb|ABQ20868.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|149739609|gb|EDM53829.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|150423382|gb|EDN15327.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|227009337|gb|ACP05549.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227013194|gb|ACP09404.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229333415|gb|EEN98901.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           12129(1)]
 gi|229345027|gb|EEO10001.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC9]
 gi|229347422|gb|EEO12382.1| DNA-binding response regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229351158|gb|EEO16099.1| DNA-binding response regulator LuxR family [Vibrio cholerae B33]
 gi|229357358|gb|EEO22275.1| DNA-binding response regulator LuxR family [Vibrio cholerae BX
           330286]
 gi|229370810|gb|ACQ61233.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           MJ-1236]
 gi|254844106|gb|EET22520.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297536463|gb|EFH75296.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297542964|gb|EFH79014.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 216

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213

Query: 233 YI 234
            +
Sbjct: 214 LL 215


>gi|320334192|ref|YP_004170903.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755481|gb|ADV67238.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 211

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 159 DFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             L L   R+       L++RET  L+   DG +++EIA  LG+SV TV  ++     KL
Sbjct: 134 AHLVLGVVRAPDGEVSALSDRETEVLRRVADGLSNKEIARDLGVSVSTVKVHVQDILTKL 193

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A +R  A  KA+R G +
Sbjct: 194 SASDRTHAAVKALRAGLL 211


>gi|312960986|ref|ZP_07775491.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311284644|gb|EFQ63220.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 261

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 63/216 (29%), Gaps = 17/216 (7%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           +   +   N               ++   +  +          +      D F      G
Sbjct: 33  LHQCLPFDNALAIFYPLEGPPQALEEYDAQPSSKPASMLAY--LNGLYLLDPFFQACREG 90

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLML 141
               +++  +         +  +      +    + F ++L       +       F   
Sbjct: 91  YASGVYRLEEVAPDHFRQSEYFLNYFHDNVLEDEVQFILQLPGAGTLSLSLGMQRRFSGE 150

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDG 188
              ++         ++    +   +R  A  +             L+ERE    +L   G
Sbjct: 151 ETGLMTLLAAWVLPLMQQHWQQSTQRVPAMDSQIRDALSQFGSGVLSERELEIARLVLRG 210

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++S+ +AE+L +S  TV  +      KLD +++ + 
Sbjct: 211 FSSKAMAERLNISPDTVKVHRRHLYAKLDILSQPEL 246


>gi|312198290|ref|YP_004018351.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229626|gb|ADP82481.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 248

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDG 188
           +  +   + A + ++ A G   ++I  F+ +    +S     A  LT+RE + L    +G
Sbjct: 137 LLAAIRTVAAGDALL-APGVTRRLIAAFVRVPAPPASPLTGLASTLTDRERAVLTQIANG 195

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y++ EIA+ L +SV TV  ++G    KL A +R Q +  A   G +
Sbjct: 196 YSNAEIAQALYVSVSTVKTHVGHLLAKLAARDRAQLVIAAYESGLV 241


>gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 216

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            A   LT  E   +Q    G  + EIA++L +S  T+ +++ +   K    NR +    A
Sbjct: 151 PANVELTPTELKVVQFVARGLANREIAQELNVSQRTIESHVSNMLGKTGLHNRTELARWA 210

Query: 229 IR 230
           I 
Sbjct: 211 IE 212


>gi|91223385|ref|ZP_01258650.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91191471|gb|EAS77735.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 214

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 87  IIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144
             W  +      E      L  +L  G+L  +     V        YV+           
Sbjct: 73  FGWSFMLHNVPCEKVQTDLLHWKLLKGILLRSA---SVTHICDGAEYVLKGG-------- 121

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +        +++ ++             LT RE   L+L   G ++++IA +L LS  T
Sbjct: 122 -LWLPRMYLEKLVLNYRHANLSEEQQHDELTCREKQILELLVYGISNQQIASRLFLSEST 180

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           V +++     KLD  +R  A+  
Sbjct: 181 VKSHIYKLYKKLDVHSRHDAVKL 203


>gi|259419012|ref|ZP_05742929.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
 gi|259345234|gb|EEW57088.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
          Length = 251

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 74/237 (31%), Gaps = 10/237 (4%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLD 60
           SE      +  +++EL        NR         YT+               L N+  +
Sbjct: 4   SEYLHQLTQFKTIEELWHAHVSQMNRYGFDRLLYGYTLFKTRTSLGDPDDFVVLSNHSPE 63

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV---IESSGQLSVRLEGGLLPFAG 117
                 +         L           W++ Q+      ++   +        +   AG
Sbjct: 64  YLQGFLVDGLYSHAPMLTWALENEGHASWRAAQDMAAQGLLDCKARKVHEFNQAMNVCAG 123

Query: 118 IAFPVRLGFHKN--GYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKKRSS---AA 171
                     +      +     L     + I   HG+   ++ +   L           
Sbjct: 124 YTISFNSATDRFKGAISLAARPGLDQDAIDQIWAEHGSDIVLMNNVAHLKILTLPYHAPN 183

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           R LT+R+   LQ  GDG T+++IA  +GL+  T+  +L  A   L      QA+ KA
Sbjct: 184 RALTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLCVETTAQAVLKA 240


>gi|237725811|ref|ZP_04556292.1| transcriptional regulator [Bacteroides sp. D4]
 gi|265753165|ref|ZP_06088734.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|229435619|gb|EEO45696.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|263236351|gb|EEZ21846.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 256

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +LT RE   L+L   G+ S+EIA+KL +S+HTV+ +  +   KL   N ++AI    
Sbjct: 191 PVVSLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVHNSLEAIRLGQ 250

Query: 230 RFGYI 234
             G +
Sbjct: 251 ESGLL 255


>gi|229525876|ref|ZP_04415281.1| DNA-binding response regulator LuxR family [Vibrio cholerae bv.
           albensis VL426]
 gi|229339457|gb|EEO04474.1| DNA-binding response regulator LuxR family [Vibrio cholerae bv.
           albensis VL426]
          Length = 214

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 152 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 211

Query: 233 YI 234
            +
Sbjct: 212 LL 213


>gi|229082566|ref|ZP_04215029.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228700998|gb|EEL53521.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 189

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|291295648|ref|YP_003507046.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470607|gb|ADD28026.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 200

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +         +       + I   L    +  S    LT+RE   L+LAG+G TS EIA 
Sbjct: 105 DAPSSELAEAVRRVYLGGRAIDPLLAA--QAWSEEDPLTDRERRVLRLAGEGRTSAEIAA 162

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +LGLS  TV  YL  A  KL A NR++A   A   G++
Sbjct: 163 ELGLSEGTVRNYLSEAISKLGAQNRVEAARIAREKGWL 200


>gi|223934475|ref|ZP_03626396.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896938|gb|EEF63378.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 231

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+   ++LTERE   L L   G+  +EIA+ L +S  TV  ++ +   KL   +R +A  
Sbjct: 167 RAPEIKSLTEREEQVLALLSKGHAYKEIADLLNISFETVRTHVRTIYDKLHVHSRTEATL 226

Query: 227 K 227
           K
Sbjct: 227 K 227


>gi|254209388|ref|ZP_04915734.1| DNA-binding response regulator NarL [Burkholderia mallei JHU]
 gi|147750161|gb|EDK57232.1| DNA-binding response regulator NarL [Burkholderia mallei JHU]
          Length = 246

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 177 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 236

Query: 232 GY 233
           G 
Sbjct: 237 GL 238


>gi|145594766|ref|YP_001159063.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145304103|gb|ABP54685.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 231

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGY 189
             +    +A    + A     +++    +L    ++       +LT RE   L     G 
Sbjct: 123 LAAAIRSVAAGDAVAAPRILDRLLNQLADLLPDPAATPSRLLDSLTGREREVLVQVARGR 182

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ EIA++L +S  TV  ++G+   KL   +R+QA+  A   G I
Sbjct: 183 SNAEIAQELSVSETTVKTHVGNVLTKLRLRDRVQAVVLAYESGLI 227


>gi|114561746|ref|YP_749259.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333039|gb|ABI70421.1| transcriptional regulator, LuxR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 222

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 12/159 (7%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG-FHKNGYVIFTS 136
              +S  +P++   + E   +     L     G L   + +   VR   +      +  +
Sbjct: 57  AALDSKGIPLLVSRLVEHVPV----ALYQVERGSLDQESALLLGVRGLLYSDQRMDLMLT 112

Query: 137 EFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSCLQLAGDGY 189
               + ++ +        ++            E+     +  + LT RE + +QL   G 
Sbjct: 113 GLRKMVSDELWYDRPLISKIFRRLVQQLDTSAEIPADTVAILQRLTSRERTIIQLVSSGA 172

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            ++EIA++L +S HTV A++ S   K ++ NR++ +  A
Sbjct: 173 RNKEIAQRLCISEHTVKAHISSIFRKTESRNRVELLRWA 211


>gi|116621985|ref|YP_824141.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225147|gb|ABJ83856.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 216

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   LQ+  +G +++E+A  L +S  TV  +      KLD  +  + I  A+R 
Sbjct: 153 DLLSDREREVLQMIAEGRSNKEVANLLNISPTTVETHRAHILQKLDIHSVPELILYAVRK 212

Query: 232 GYI 234
           G I
Sbjct: 213 GII 215


>gi|300787834|ref|YP_003768125.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797348|gb|ADJ47723.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 192

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 3/143 (2%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF---LMLANEVIIE 148
           + +  +    G   +R  G   P   +   V         +   +        + + +  
Sbjct: 50  LLDLYLPGMDGLEVLRRLGPAAPRVLMLTTVGRPREIREALTAGAAGFVLKDASGDELAA 109

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A  A +Q +T          S    LT RE   L+L G+G ++ +IA +L L+  TV  +
Sbjct: 110 AVRAAHQGVTALSPAAASALSGGGVLTPRERDVLELLGEGLSNRDIAARLRLAERTVKVH 169

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           +G+   KL   +R QA   A   
Sbjct: 170 VGNVLAKLGVTSRTQAALAARDR 192


>gi|240172655|ref|ZP_04751314.1| transcriptional regulator, LuxR family protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 968

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 5/150 (3%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
             I      + + +        +    G    V     +      +      A  +  EA
Sbjct: 818 ARIAALGGDDQAAERLFGAALEMDRRMGSVVHVSETLARQALFEASRGRAEAARRLADEA 877

Query: 150 HGAC-----YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                     +V+     L     +    LT+RE   L+L   G ++  I E+L +S +T
Sbjct: 878 CAIAGPIGQVRVLGLVDSLLTGDLAGPDGLTDREIEVLRLLAAGLSNRAIGERLYISTNT 937

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              ++ S  +K  A NR QA   A     +
Sbjct: 938 AANHVRSILIKTGAANRTQAAMYAADHQLL 967


>gi|296130518|ref|YP_003637768.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022333|gb|ADG75569.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 209

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184
               GY++  +    L   V   A G      +    L  + R      LT RE   L  
Sbjct: 97  AGATGYLLKDTPREQLVAGVRAAARGESALSPSIAQRLVRQVRGGTGERLTPREREVLAG 156

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G ++  +  +L ++  TV  +L  A  KL   +R +A+  AI  G +
Sbjct: 157 VARGLSNAAVGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 206


>gi|150376486|ref|YP_001313082.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150031033|gb|ABR63149.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 219

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + + E  +    +   +    L     +S+    LT RE   L L   G ++++IA K
Sbjct: 118 RTVASGESYVAPTLSAKLLTGQLLNPAPAKSNLVAELTRREQEVLHLVASGMSNKQIARK 177

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           L L   TV  ++     KL+  NR +A 
Sbjct: 178 LDLHEKTVKHHMTQIMAKLNVANRTEAA 205


>gi|114048791|ref|YP_739341.1| LuxR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890233|gb|ABI44284.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7]
          Length = 221

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 44/86 (51%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
              ++ +      Q + D  EL    ++  + LT RE + +Q   +G  ++EIA++L +S
Sbjct: 124 DRTLLSKMFCRMVQKLEDNNELSADNAAVLQMLTNRERTIIQFVSNGARNKEIADRLFIS 183

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAK 227
            HTV A++ S   K  + NR++ +  
Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRW 209


>gi|298250665|ref|ZP_06974469.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548669|gb|EFH82536.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1075

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%)

Query: 150  HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                     D  E   + S++   L+E E   L+   +GYT  EIA +L  + +TV  + 
Sbjct: 991  QLLAMLDKQDMAEKPAENSASTELLSEHEFVILRCLAEGYTDREIARRLVRAENTVKTHT 1050

Query: 210  GSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL+  +R QAIA++   G +
Sbjct: 1051 KHIYDKLNVHSRTQAIARSRELGLL 1075


>gi|228988578|ref|ZP_04148665.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771195|gb|EEM19674.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 189

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|126452622|ref|YP_001066938.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106a]
 gi|242317399|ref|ZP_04816415.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106b]
 gi|126226264|gb|ABN89804.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106a]
 gi|242140638|gb|EES27040.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106b]
          Length = 233

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 164 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 223

Query: 232 GY 233
           G 
Sbjct: 224 GL 225


>gi|53719924|ref|YP_108910.1| putative response regulator protein [Burkholderia pseudomallei
           K96243]
 gi|53724171|ref|YP_103355.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           23344]
 gi|76809195|ref|YP_334149.1| DNA-binding response regulator NarL [Burkholderia pseudomallei
           1710b]
 gi|121601164|ref|YP_993557.1| DNA-binding response regulator NarL [Burkholderia mallei SAVP1]
 gi|124386217|ref|YP_001029014.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10229]
 gi|126440837|ref|YP_001059655.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 668]
 gi|126449502|ref|YP_001081065.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10247]
 gi|134277548|ref|ZP_01764263.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 305]
 gi|167003441|ref|ZP_02269227.1| DNA-binding response regulator NarL [Burkholderia mallei PRL-20]
 gi|217420735|ref|ZP_03452240.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 576]
 gi|226195464|ref|ZP_03791052.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813049|ref|YP_002897500.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Burkholderia pseudomallei MSHR346]
 gi|238561643|ref|ZP_00441776.2| DNA-binding response regulator NarL [Burkholderia mallei GB8 horse
           4]
 gi|254177953|ref|ZP_04884608.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           10399]
 gi|254184342|ref|ZP_04890932.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1655]
 gi|254191372|ref|ZP_04897876.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195930|ref|ZP_04902356.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei S13]
 gi|254200313|ref|ZP_04906679.1| DNA-binding response regulator NarL [Burkholderia mallei FMH]
 gi|254261045|ref|ZP_04952099.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1710a]
 gi|254357939|ref|ZP_04974212.1| DNA-binding response regulator NarL [Burkholderia mallei
           2002721280]
 gi|52210338|emb|CAH36317.1| putative response regulator protein [Burkholderia pseudomallei
           K96243]
 gi|52427594|gb|AAU48187.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           23344]
 gi|76578648|gb|ABA48123.1| DNA-binding response regulator NarL [Burkholderia pseudomallei
           1710b]
 gi|121229974|gb|ABM52492.1| DNA-binding response regulator NarL [Burkholderia mallei SAVP1]
 gi|124294237|gb|ABN03506.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10229]
 gi|126220330|gb|ABN83836.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 668]
 gi|126242372|gb|ABO05465.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10247]
 gi|134251198|gb|EBA51277.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 305]
 gi|147749909|gb|EDK56983.1| DNA-binding response regulator NarL [Burkholderia mallei FMH]
 gi|148027066|gb|EDK85087.1| DNA-binding response regulator NarL [Burkholderia mallei
           2002721280]
 gi|157939044|gb|EDO94714.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698992|gb|EDP88962.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           10399]
 gi|169652675|gb|EDS85368.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei S13]
 gi|184214873|gb|EDU11916.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1655]
 gi|217396147|gb|EEC36164.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 576]
 gi|225932424|gb|EEH28423.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505451|gb|ACQ97769.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Burkholderia pseudomallei MSHR346]
 gi|238524266|gb|EEP87700.1| DNA-binding response regulator NarL [Burkholderia mallei GB8 horse
           4]
 gi|243061043|gb|EES43229.1| DNA-binding response regulator NarL [Burkholderia mallei PRL-20]
 gi|254219734|gb|EET09118.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1710a]
          Length = 233

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 164 DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 223

Query: 232 GY 233
           G 
Sbjct: 224 GL 225


>gi|51892059|ref|YP_074750.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855748|dbj|BAD39906.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 230

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               +  +    LTERE   L L   G T+++IAE+L +S+ TV A+  +   KLD  + 
Sbjct: 153 RGASEAQAQLAQLTEREREVLTLIAHGLTNQQIAERLFISIKTVQAHRANLMEKLDLHDA 212

Query: 222 IQAIAKAIRFGYI 234
           ++    AI+ G +
Sbjct: 213 VELTKFAIKSGLL 225


>gi|297192611|ref|ZP_06910009.1| two-component system DNA-binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151436|gb|EFH31165.1| two-component system DNA-binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + +       ++    L+ F    +         LT
Sbjct: 111 IRGGARGYVTKTITGSDLVDSVFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 170

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 171 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 229


>gi|298252386|ref|ZP_06976187.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297545702|gb|EFH79572.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 202

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +RE   L+L  +G +++EIA+ L ++  T+  +L     KL+  +R QAI  A + G+
Sbjct: 141 LNKRELEVLRLLAEGRSNQEIADTLIVAKSTIKWHLKQIYSKLNVHSRTQAIVCARQIGF 200

Query: 234 I 234
           +
Sbjct: 201 L 201


>gi|296452018|ref|ZP_06893733.1| salavaricin two component response regulator [Clostridium difficile
           NAP08]
 gi|296879587|ref|ZP_06903566.1| salavaricin two component response regulator [Clostridium difficile
           NAP07]
 gi|296259209|gb|EFH06089.1| salavaricin two component response regulator [Clostridium difficile
           NAP08]
 gi|296429390|gb|EFH15258.1| salavaricin two component response regulator [Clostridium difficile
           NAP07]
          Length = 206

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT  E   LQL   G   + IA++L +S  T++ +L     KLD  + ++AI KAI+ 
Sbjct: 140 EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIQM 199

Query: 232 GYI 234
           GYI
Sbjct: 200 GYI 202


>gi|255657144|ref|ZP_05402553.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-23m63]
          Length = 200

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT  E   LQL   G   + IA++L +S  T++ +L     KLD  + ++AI KAI+ 
Sbjct: 134 EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIQM 193

Query: 232 GYI 234
           GYI
Sbjct: 194 GYI 196


>gi|255308234|ref|ZP_05352405.1| salavaricin two-component response regulator [Clostridium difficile
           ATCC 43255]
          Length = 200

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT  E   LQL   G   + IA++L +S  T++ +L     KLD  + ++AI KAI+ 
Sbjct: 134 EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIQM 193

Query: 232 GYI 234
           GYI
Sbjct: 194 GYI 196


>gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 212

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +   LT  E   +QL   G  + +IA+KL +S  T+ +++ +   K +  NR +    A
Sbjct: 147 PSHVELTPTELKVIQLVAQGMANRDIADKLNVSQRTIESHVSNMLNKTNLHNRTELARWA 206

Query: 229 IR 230
           I 
Sbjct: 207 IE 208


>gi|326331183|ref|ZP_08197479.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325951078|gb|EGD43122.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   + + +      S   + LT +E   L L G+G T+ EIA ++ L+  TV  Y
Sbjct: 131 LDPLMTAKVMEKMRNPDGESPQMQALTPQEKRLLALIGEGLTNREIAGRMFLAEKTVKNY 190

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           + S   KL    R QA   A   
Sbjct: 191 VSSILAKLGVQRRTQAALMAKEL 213


>gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510]
          Length = 310

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAAR 172
             AG+    R          F  E         +E          ++L  L +  +    
Sbjct: 180 LAAGLVRLRRPSPPGGAMEPFALELPDGEGVRRLEFTYLSPAGPDEYLFRLSEPTAGRQE 239

Query: 173 N-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT RE   L    +G  + +I E LG+S  TVN +L     KL   NR  A 
Sbjct: 240 AILRDALGLTAREAEVLLWIANGKPNRDIGEILGISPRTVNKHLEQVFAKLGVENRASAA 299

Query: 226 AKAIR 230
           A AIR
Sbjct: 300 ALAIR 304


>gi|256396212|ref|YP_003117776.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362438|gb|ACU75935.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 241

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               V  + + ++  +           +         +   +    +T+RE   L L G 
Sbjct: 131 DAVRVTASGDAIIAPSVTRKLIAEFAIRPDPGATAPRRGDKALLDGVTDREREVLTLVGR 190

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ EIAE+L +S  T  A++     KL A +R+Q +  A   G +
Sbjct: 191 GLSNGEIAEELFISAATAKAHVARLFTKLGARDRVQLVITAYEAGLV 237


>gi|297197553|ref|ZP_06914950.1| luxR family two-component system response regulator [Streptomyces
           sviceus ATCC 29083]
 gi|197715575|gb|EDY59609.1| luxR family two-component system response regulator [Streptomyces
           sviceus ATCC 29083]
          Length = 233

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQL 184
            G  + ++   + + + +++        +   L      + A       L+ RE   L L
Sbjct: 118 RGSDLVSAVRTVASGQSMLDPATTAR--LMRSLRADPAETPAMAPELASLSPRERDILAL 175

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            GDG T+ EI +KL LS  TV  ++     KL    R+QA   A
Sbjct: 176 IGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLA 219


>gi|158315190|ref|YP_001507698.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158110595|gb|ABW12792.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 226

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT RE   + L  +GY++ EIA++L +S  T   ++  A  KL+A +R Q +  A 
Sbjct: 156 ALAALTAREREVMALVAEGYSNHEIADRLVISPLTARTHVHRAMAKLNARDRAQLVVIAY 215

Query: 230 RFGYI 234
           + G +
Sbjct: 216 QSGLL 220


>gi|94985596|ref|YP_604960.1| LuxR family transcriptional regulator [Deinococcus geothermalis DSM
           11300]
 gi|94555877|gb|ABF45791.1| transcriptional regulator, LuxR family [Deinococcus geothermalis
           DSM 11300]
          Length = 197

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G +++  A +LG+S  TV  ++ +   KL   +R  A+ + I+ G 
Sbjct: 135 LTPRERDVLALLAAGLSNKRAARELGVSESTVKFHVQAVYSKLGVQSRAAAVTRGIQLGL 194

Query: 234 I 234
           +
Sbjct: 195 L 195


>gi|320333847|ref|YP_004170558.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755136|gb|ADV66893.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 215

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 151 GACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                V    L   +    AA          LT+RE   L+L   GY++ EIA  L  + 
Sbjct: 124 WLQPAVTQRVLRGLEAFRPAAEPFTPCDAVTLTDRECDVLRLLAGGYSNREIAGALRTTE 183

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV +Y+ +   KL   +R +A+ KA+  G +
Sbjct: 184 GTVKSYVSNVLSKLGVRDRTRAVLKALELGVL 215


>gi|78046491|ref|YP_362666.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926045|ref|ZP_08187409.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78034921|emb|CAJ22566.1| putative transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325543571|gb|EGD14990.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 235

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      +  A +        H    V ++       N+ +        
Sbjct: 86  AAGDGQEAAWLMPPRPSDIREARVPIHALGTTHGMLCVAWSEGRPAPGNDDVQALQAFAL 145

Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E       ++R          L++RE   L L   G T+  +A +LG+S  TV
Sbjct: 146 LLPAMVAEPAKPIATRRRKPLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++     KL+  +R QA   A++ G 
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|298247008|ref|ZP_06970813.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297549667|gb|EFH83533.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 644

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           I+A     QV     +  + R     +L+ERE   L+L   G ++ +I E L +S  TV 
Sbjct: 558 IQAQRLRNQVRRRARKPARSRLPL--DLSEREVEVLRLVATGKSNRQIGEILVISERTVI 615

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ S   K    NR  A A AIR   +
Sbjct: 616 NHIASIFNKTGVSNRAGATAFAIRHKLV 643


>gi|288924067|ref|ZP_06418126.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344590|gb|EFC79060.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 171

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 32/69 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L        A   L +RE   LQL  DG T+ +I  +LGLS  TV  Y+ S   KL  
Sbjct: 96  ERLRDGPHEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGL 155

Query: 219 VNRIQAIAK 227
            +R QA   
Sbjct: 156 ASRTQAAVY 164


>gi|262042600|ref|ZP_06015756.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329998588|ref|ZP_08303172.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
 gi|259040034|gb|EEW41149.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538607|gb|EGF64707.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
          Length = 182

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +           +      LTERE   L     G T+ +IA  L +S +TV  +L +   
Sbjct: 103 MHPAMYAADHASTPVENSPLTERECEILNELRCGATNLDIARALFISENTVRTHLYNVFR 162

Query: 215 KLDAVNRIQAIAKAIRF 231
           KL   NR QA++ A   
Sbjct: 163 KLSVKNRTQAVSWANEH 179


>gi|148657384|ref|YP_001277589.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148569494|gb|ABQ91639.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 214

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 20/219 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             +    L  ++  ++  N               + L+  + +   D   +   +    G
Sbjct: 13  ADDHELVLEGLRGLLERENDM----TVVATATDGESLLALIESERPDVVVMDLAMPTRDG 68

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              L       +P+    +       +            L   G A            + 
Sbjct: 69  LSCLREIRRRGMPVKIVILTAFGDGGALQSAWE------LQADGFALKTDPPRQTIATIR 122

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
             +   ++   V+ +A        T  L            LT+RE   L+L  +G  + +
Sbjct: 123 NVAHGQIVFPRVVRQAADPSQTQHTSLLA----------RLTQRERDVLRLLAEGMPNAQ 172

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           IAE+L +   TV  +L +   KL   NR +A     R G
Sbjct: 173 IAERLVVQESTVKYHLQNIFQKLGVTNRTEAAQVYYREG 211


>gi|73538891|ref|YP_299258.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72122228|gb|AAZ64414.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 217

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAAR-------NL 174
           L     GY++   E   L + +   A G     + +T  L    +  + A         L
Sbjct: 95  LRRGARGYLLKNIETEALTSAIRRAAAGEPVISEAMTAKLVQQFRAPAPAPVRQDDTAKL 154

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           T RE   +Q    G +++EIA  LG++  TV  ++ +   KL+  +R+Q    A+  G 
Sbjct: 155 TAREREIVQGLTRGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVERGL 213


>gi|26987503|ref|NP_742928.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24982170|gb|AAN66392.1|AE016267_1 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
          Length = 905

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 42/87 (48%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +++     +    +     L+ RE + L+L   G ++++I+E+L +S+HTV  
Sbjct: 818 AACPVQAELLKHLPPVPIASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKT 877

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +      KL    R QA+AKA   G +
Sbjct: 878 HASHINSKLGVERRTQAVAKAKSLGLL 904


>gi|313896828|ref|ZP_07830375.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974275|gb|EFR39743.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 217

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAAR-----NLTERE 178
              GY+  TS    L + +   A              L     R   A       LTERE
Sbjct: 97  GAMGYLPKTSADDELFDALHALAEGRRYLSPNAQQSLLAAMFSRPGDAEEDPRARLTERE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                    GYT  E AE+L LS  TV+ +      KL    R   +A AIR G +
Sbjct: 157 KEVFDRLIRGYTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHGLL 212


>gi|322436606|ref|YP_004218818.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164333|gb|ADW70038.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 240

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           E +     A ++++    ++ ++++     LT RE   +Q   +G +++++A++  +S  
Sbjct: 149 ERVANLLKALHELMQKAAQVPERKT---YGLTPRELEVVQCIVEGCSNKDVAKQFTISEE 205

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +L +   K     R++    AI    +
Sbjct: 206 TVKRHLSNIFDKTGVSTRLELALFAIAHKLV 236


>gi|256380943|ref|YP_003104603.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925246|gb|ACU40757.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 234

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETS 180
                 ++  +       E I+ AH     +      L    S  A +     L+ RE  
Sbjct: 115 AAGVRGLVPRTAEPAEVVEAILRAHRERVHLDPTLAPLAAGFSPGADSGTRRALSRREYE 174

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LQL  DG  ++ +A+ L +SV TV  ++ +   KL A +R  A++ A + G +
Sbjct: 175 VLQLIADGLENQSVADALYVSVETVRTHVKNILRKLRARDRTHAVSLAYQAGLL 228


>gi|238062472|ref|ZP_04607181.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237884283|gb|EEP73111.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 226

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +    A + LTERE   L L  DG ++ EI  ++ LS  TV  ++ +   KL   NR++
Sbjct: 149 DEHAVRAVQRLTEREREVLTLLADGLSNSEIGGRMFLSAGTVKDHVSAILTKLGVDNRVR 208

Query: 224 AIAKAIRFGYI 234
           A   A R G +
Sbjct: 209 AALLAERAGLL 219


>gi|284039670|ref|YP_003389600.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283818963|gb|ADB40801.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 214

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 157 ITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           + + L +  + +       +LT RE   ++L  +G ++ +IAE+L LS  T+  +  +  
Sbjct: 135 LPNELAIDPRETDPFVKQFSLTPREIEIIRLIRNGLSTSQIAERLFLSAETIKTHRKNIY 194

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KL   +    I  A   G 
Sbjct: 195 FKLGINSVAALILFANEQGI 214


>gi|186682185|ref|YP_001865381.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464637|gb|ACC80438.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 215

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   L+L   G  + EIAE L LS +TV  Y+ +   +L   +R QA   A   
Sbjct: 152 QLTPRELDVLRLIASGANNREIAESLFLSENTVKNYVTNILSRLSLRDRTQAALFAHSL 210


>gi|269219143|ref|ZP_06162997.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211290|gb|EEZ77630.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 235

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 40/80 (50%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++ ++L      S      ++RE   L+L    +++ EIA +L +   TV  ++ S   
Sbjct: 154 RLVKNYLVPLPPDSGVNVQFSKREMDVLRLLCQAHSNSEIAAQLYVQESTVKTHISSIMA 213

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  +R++ + +A   G +
Sbjct: 214 KLEVNSRLKVVVRAYELGLV 233


>gi|229489605|ref|ZP_04383468.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229323702|gb|EEN89460.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 230

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 38/88 (43%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             A     Q +   LE     +     LT RE   L+    G ++ EIA K  +S  TV 
Sbjct: 133 ARATRRLLQHVGPLLEGSAPEAQLPEELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVK 192

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++G    K  + +R+QA+  A + G +
Sbjct: 193 THVGRVLSKTHSRDRVQAVVFAFQIGLV 220


>gi|187920901|ref|YP_001889933.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187719339|gb|ACD20562.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 210

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 13/167 (7%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
                      +       S   L  R+     P   +   +          +       
Sbjct: 42  RLRARRFDLVLLDMTMPGISGVDLIRRVRAEQPPLPILVLSIHNEAQVVSRALRAGATGY 101

Query: 141 LANEVIIEAHGACYQVIT-------------DFLELFKKRSSAARNLTERETSCLQLAGD 187
           +  +   +   A  + +                 E     +     L++RE   LQ+   
Sbjct: 102 VTKDSDPDVLLAAIRKLAGGGRFIDPKLVDAMVFETHSGDAPPHEVLSDREFQVLQMLAA 161

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G +  EIAE   LS  T++ +      KL   N  + I  A+R G +
Sbjct: 162 GQSINEIAESCSLSAKTISTHKMRLMQKLGLNNNAELIRYAVRHGLV 208


>gi|186471314|ref|YP_001862632.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197623|gb|ACC75586.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 210

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 13/156 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       S   L  R+         +   +          +       L  +   +   
Sbjct: 53  LDMTMPGISGVDLIRRVRAEQPALPVLVLSIHDEAQVASRALRAGATGYLTKDSDPDVLL 112

Query: 152 ACYQVITDFLEL-------------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           A  + + D                  +        L++RE   LQ+   G +  EIA+  
Sbjct: 113 AAIRKLADGGRFIDPKLVDAMVFETHRGDMPPHEVLSDREFQVLQMLAAGKSINEIADIC 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  T++ +      KL   N  + I  AIR G I
Sbjct: 173 ALSAKTISTHKMRLMQKLGLANNAEVIRYAIRHGLI 208


>gi|254516346|ref|ZP_05128405.1| transcriptional regulator [gamma proteobacterium NOR5-3]
 gi|219674769|gb|EED31136.1| transcriptional regulator [gamma proteobacterium NOR5-3]
          Length = 925

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L      +++I  +L +S HTV  +L     KL+  NR  AIAKA R G 
Sbjct: 858 LTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKATRTGL 917

Query: 234 I 234
           +
Sbjct: 918 L 918


>gi|223938390|ref|ZP_03630284.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223892959|gb|EEF59426.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 234

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           ++ LT RET  L +  +G +++E+A ++G+ V TV  +      KLD  N       AI 
Sbjct: 167 SKKLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKLDIHNVAGLTKYAIA 226

Query: 231 FGYI 234
            G I
Sbjct: 227 HGII 230


>gi|169631593|ref|YP_001705242.1| two-component LuxR family response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169243560|emb|CAM64588.1| Putative two-component system response regulator, LuxR family
           [Mycobacterium abscessus]
          Length = 222

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           G    V+ +F  +    ++ A     L++RET  L+L   G ++++IA +L LS  TV  
Sbjct: 135 GLAGLVLGEFRRMSSAPAADADETPRLSDRETEVLRLVAKGLSAKQIATRLSLSHRTVEN 194

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ S   KL   NR++    AI  G 
Sbjct: 195 HVQSTLRKLQLGNRVELTRYAIEHGL 220


>gi|46201160|ref|ZP_00055614.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 190

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT R+   L L   G ++++IA +L ++  TV A++ +   KL   +R QA+  A + G
Sbjct: 129 SLTHRQRMVLSLLARGKSNKQIAYELDVTNTTVKAHMTAILRKLKVTSRTQAVIVARQIG 188


>gi|319893351|ref|YP_004150226.1| Two-component response regulator [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163047|gb|ADV06590.1| Two-component response regulator [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463599|gb|ADX75752.1| two-component response regulator NreC [Staphylococcus
           pseudintermedius ED99]
          Length = 216

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +   + L++RE   L L   GY +++IAEKL +SV TV A+      KL+  ++ + 
Sbjct: 145 EYSNDPFKVLSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTRIMDKLNLKSKPEL 204

Query: 225 IAKAIRFGYI 234
           +  A++   +
Sbjct: 205 VEYALKKKLL 214


>gi|315180669|gb|ADT87583.1| transcriptional regulator UhpA [Vibrio furnissii NCTC 11218]
          Length = 208

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 14/164 (8%)

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGYVIFTS 136
             +P+    I      E+   L  RL      F  I   +             G   + S
Sbjct: 44  TQMPVDVAVIDISMPDENGLSLLERLRQHDPAFKAIILSIYDSASFVKKALDAGAQGYLS 103

Query: 137 EFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
           +    +        V       C   + +        ++   +LT+RE         G  
Sbjct: 104 KRCGPSELASAIRTVAAGKRYLCADALVNLS--NPDINNVLVDLTKRELEVFDQLIQGKE 161

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +EIA+ L LS  TV+ +  +   KL+  N +  I  AI+   +
Sbjct: 162 VKEIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFAIQHHLL 205


>gi|228994069|ref|ZP_04153970.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228765717|gb|EEM14370.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 189

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 43/94 (45%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            + ++                EL          L++RE   L LA +G T+ EIA+ L L
Sbjct: 96  PSEDLAAAIRNVMQGKREISPELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKTLYL 155

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV  Y+     KL+A NRI+AIA A   G+I
Sbjct: 156 SSGTVRNYISDVLTKLNAKNRIEAIAIAEEKGWI 189


>gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 212

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +   LT  E   +QL   G  + EIAEKL +S  T+ +++ +   K    NR +    A
Sbjct: 147 PSNVELTPTELKVIQLVAQGMANREIAEKLNVSQRTIESHVSNMLNKTSLHNRTELARWA 206

Query: 229 IR 230
           I 
Sbjct: 207 IE 208


>gi|156932979|ref|YP_001436895.1| transcriptional regulator NarP [Cronobacter sakazakii ATCC BAA-894]
 gi|156531233|gb|ABU76059.1| hypothetical protein ESA_00782 [Cronobacter sakazakii ATCC BAA-894]
          Length = 214

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY------------- 154
           L    +    I   V         +        L  +   EA                  
Sbjct: 74  LRRDGVNARIIVLTVSDAQSDIFAMTDAGADGYLLKDSEPEALLEAIRAGAAGAGAFSEQ 133

Query: 155 -QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            Q      +  ++R +    LT RE   LQ    G ++++IA  L +S  TV  ++ +  
Sbjct: 134 VQAYLLARKPDEQRDAPFALLTGRELDVLQEVARGLSNKQIASALQISEETVKVHIRNLL 193

Query: 214 VKLDAVNRIQAIAK 227
            KL+  +R+ A   
Sbjct: 194 RKLNVRSRVAATVL 207


>gi|326384821|ref|ZP_08206497.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196483|gb|EGD53681.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 229

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                     R +    LTERE    +L   G ++ EIA++L L + TV  ++G    KL
Sbjct: 143 FARAPTAPTSRPAVLDVLTERELEVFELVAVGLSNGEIADRLHLGLTTVKTHIGRLLTKL 202

Query: 217 DAVNRIQAIAKAIRFGYI 234
           DA +R+  + +A   G +
Sbjct: 203 DARDRVHLVIRAYETGLV 220


>gi|317123319|ref|YP_004097431.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587407|gb|ADU46704.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM
           43043]
          Length = 985

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 7/153 (4%)

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148
           W   QE+        ++ R         G  F       +    +  +   + + +V   
Sbjct: 832 WVLGQEDPPPVEEMLVAWRASVEAFDRLGHVFEAARSRGRLAAALHAAGRDVDSRQVAGS 891

Query: 149 AHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           A     ++    L       +           LT RE   L L   G ++ +I ++L +S
Sbjct: 892 AREVAVRLRARPLLAELDALAPRAPAAATAVELTPRELEVLALVARGLSNGQIGKQLYIS 951

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV+ ++ +   KL A  R +A A A     +
Sbjct: 952 TKTVSVHVSNLLAKLGASGRTEAAAIARDRALV 984


>gi|228925153|ref|ZP_04088263.1| Response regulator receiver [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228834492|gb|EEM80021.1| Response regulator receiver [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 537

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLE---LFKKRSSAARN 173
           +R G          S  L  +  ++        HG  +++  +  E      +       
Sbjct: 416 IRNGADGYLLKSIDSRELAESIRLVYRGGTMINHGLFHRMWEENEEKGSFESRSDGKEYG 475

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+L   G   + IA  L LS  TV  Y  +   KL   NR +A+ KA   G 
Sbjct: 476 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDKGL 535

Query: 234 I 234
           +
Sbjct: 536 L 536


>gi|118472043|ref|YP_890213.1| two-component regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118173330|gb|ABK74226.1| two-component regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 305

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                ++     L  +R    + L  T RE   L+L   G ++ +IAE+L ++VHTV  +
Sbjct: 214 RVSAILLRRLSTLASQRQPVHKELVLTSREIQILRLLEMGLSNRDIAEQLCIAVHTVKNH 273

Query: 209 LGSATVKLDAVNRIQAIAKAI 229
           + S   KL    R QA A A 
Sbjct: 274 VHSLLAKLGVSTRAQAAALAR 294


>gi|299533898|ref|ZP_07047264.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298718125|gb|EFI59116.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 223

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   L+L   GY+S EI+ +L +S  TV+ ++ +   KL A  R  A+  A   
Sbjct: 161 EKLSEREIEILKLIACGYSSPEISTQLKISTLTVSTHVKNMYRKLQAKTRAHAVKAASLR 220

Query: 232 GYI 234
           G I
Sbjct: 221 GLI 223


>gi|312198139|ref|YP_004018200.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229475|gb|ADP82330.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 227

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               + +         R  A  +LT RE     L   G ++EEIAE L +S  T   ++ 
Sbjct: 137 ALVRRFLASPQPRLDARLPAMTDLTAREREITVLVARGLSNEEIAELLVISPATAKTHVN 196

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
            A  K+ A +R Q +  A   G 
Sbjct: 197 RAMTKVHARDRAQLVVFAYENGL 219


>gi|127511776|ref|YP_001092973.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126637071|gb|ABO22714.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 209

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
              L    +    +   V         ++              ++++E      Q     
Sbjct: 69  LNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKNAMQGHRVI 128

Query: 161 LELFKK----------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            E  +             +   NLT RE   L+   +G ++  I+E+L +S  TV  ++ 
Sbjct: 129 SESVEDFIYELKDGADEQAWIDNLTPRELQILEQLAEGKSNRVISEQLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|330828902|ref|YP_004391854.1| DNA-binding response regulator, LuxR family [Aeromonas veronii
           B565]
 gi|328804038|gb|AEB49237.1| DNA-binding response regulator, LuxR family [Aeromonas veronii
           B565]
          Length = 212

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 14/134 (10%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKK 166
           L    +    +   V         ++       L  +   +   A    V+T    L + 
Sbjct: 73  LRAEEITSRVVILTVSDARQDVVALLKAGADGYLLKDTEPDLLLAQLADVMTGKQILSEP 132

Query: 167 RSS-------------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                              +LT RE   L+    G +++++A  L +S  TV  ++ S  
Sbjct: 133 LRPYLENIYELDHLQQKLESLTRREMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLL 192

Query: 214 VKLDAVNRIQAIAK 227
            KL+A +R++A   
Sbjct: 193 KKLEAQSRVEAAVM 206


>gi|311030273|ref|ZP_07708363.1| two-component response regulator DesR [Bacillus sp. m3-13]
 gi|311032980|ref|ZP_07711070.1| two-component response regulator DesR [Bacillus sp. m3-13]
          Length = 199

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    LAN +     G          EL          LTERE + L+L 
Sbjct: 94  AGVTGYLLKDSPSEDLANSIRSIMSGRRVYA----PELMDDFYGEENPLTEREKAVLELV 149

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  ++EIA++L +   TV  Y+ +   KL+  NRI+AI ++   G+
Sbjct: 150 ADGKNTQEIADELRIKSGTVRNYISNILDKLEVKNRIEAITQSKEKGW 197


>gi|240168620|ref|ZP_04747279.1| two-component transcriptional regulatory protein DevR
           [Mycobacterium kansasii ATCC 12478]
          Length = 215

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                      +   L    ++      LT++E + L L  +G T+++IA+++ L+  TV
Sbjct: 122 RSLLDNRAAAALMSKLRGGVEKPDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             Y+     KL    R QA   A + 
Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFATQL 207


>gi|226312417|ref|YP_002772311.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095365|dbj|BAH43807.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 214

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              ++I  +L    K   +   LT RE   ++L   GY+++E+A+KL +SV TV  +  +
Sbjct: 130 VSQEIINLWLRSDAKTLPSV--LTLREKELVRLIVLGYSNKEMADKLLISVKTVENHKTN 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   ++ Q I  AI+  Y+
Sbjct: 188 IMQKLGLDSKHQLIQYAIKNRYL 210


>gi|255600849|ref|XP_002537550.1| conserved hypothetical protein [Ricinus communis]
 gi|223515958|gb|EEF24832.1| conserved hypothetical protein [Ricinus communis]
          Length = 219

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 114 PFAGIAFPVRLGFH--KNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLEL------- 163
             + + + VR         YV F         + ++          I     L       
Sbjct: 85  MHSLMVYGVRDTRGKADCIYVFFDRTKEFTVPDQMLGMIMPHLDAAIRRIGHLTPVVKDE 144

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               S A   L++RE   L     G T+ EI   L +S +TV  +L     KLD   R Q
Sbjct: 145 DLLDSMAQGGLSDREQEILHWVRSGKTNLEIGMILNISANTVKNHLKRIFQKLDVSCRAQ 204

Query: 224 AIAK 227
           A+AK
Sbjct: 205 AVAK 208


>gi|172038808|ref|YP_001805309.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700262|gb|ACB53243.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 218

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+RE   L L   G T+ EIA+ L ++  TV  ++ +   KLD  +R QA   A+R
Sbjct: 157 ANLLTQREQEILALIAAGKTNSEIAQVLHIATGTVRVHVHAILQKLDVRDRTQAAILALR 216

Query: 231 F 231
            
Sbjct: 217 M 217


>gi|168484073|ref|ZP_02709025.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042589|gb|EDT50635.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1873-00]
 gi|332199429|gb|EGJ13506.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 199

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            +++   H           EL +   +    LTE+E + L+    G++++EI +KL LS 
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIVQGFSNQEIVDKLYLSN 167

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+ +   KLDA NR +A   A   G++
Sbjct: 168 GTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|153801325|ref|ZP_01955911.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|255745673|ref|ZP_05419621.1| DNA-binding response regulator LuxR family [Vibrio cholera CIRS
           101]
 gi|262159050|ref|ZP_06030162.1| DNA-binding response regulator LuxR family [Vibrio cholerae INDRE
           91/1]
 gi|262169409|ref|ZP_06037101.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC27]
 gi|262190004|ref|ZP_06048308.1| DNA-binding response regulator LuxR family [Vibrio cholerae CT
           5369-93]
 gi|124123150|gb|EAY41893.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|255736748|gb|EET92145.1| DNA-binding response regulator LuxR family [Vibrio cholera CIRS
           101]
 gi|262022222|gb|EEY40931.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC27]
 gi|262029235|gb|EEY47887.1| DNA-binding response regulator LuxR family [Vibrio cholerae INDRE
           91/1]
 gi|262034112|gb|EEY52548.1| DNA-binding response regulator LuxR family [Vibrio cholerae CT
           5369-93]
 gi|327483964|gb|AEA78371.1| DNA-binding response regulator, LuxR family [Vibrio cholerae
           LMA3894-4]
          Length = 212

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 150 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 209

Query: 233 YI 234
            +
Sbjct: 210 LL 211


>gi|157368863|ref|YP_001476852.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320627|gb|ABV39724.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 215

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 3/131 (2%)

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155
             I ++                    +R        V             +         
Sbjct: 81  AAINNNRHYYHDFMLPNNMRDMTEIFIRQRKRIVAGVSLIR---DTPFTELERGRLRAVM 137

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            + +           A+ LT +E   + +  +G +++ IA KLG+S+ TV  ++ +   K
Sbjct: 138 PLIELATRDLLPEGEAQLLTAKEQEIVNMVREGASNKRIALKLGISLSTVKTHMRNIFAK 197

Query: 216 LDAVNRIQAIA 226
            + VNR + +A
Sbjct: 198 TEVVNRTELVA 208


>gi|325830372|ref|ZP_08163829.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
 gi|325487839|gb|EGC90277.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
          Length = 213

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173
           +RLG          +        V+        +V+     L  +  + A N        
Sbjct: 94  LRLGAKGYLIKQEAATIAPALRTVMAGQSVLGGEVLDRMDVLMSRGPACAENAPGGEMRS 153

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LTERE++ ++L  +G  ++EIA +L LS  TV  ++ +   KLD  NR Q + +  R
Sbjct: 154 GLTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211


>gi|300933646|ref|ZP_07148902.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium resistens DSM
           45100]
          Length = 201

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 8/155 (5%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-------EFL 139
           +    +  E   ++  + +  +    L    +              +          +  
Sbjct: 48  VDVAILDIEMPGKNGIEATREIAESQLNCRCLIVTTFDRPGFLRQALEAGASGYVVKDTP 107

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                  +    A  +V+   L      S  +  LT RE    +    G +S  IA+ L 
Sbjct: 108 AAQLAESVRRVHAGARVVDSALATEALYSPPS-PLTPREVDVCREVLTGKSSANIAKALH 166

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV  ++ SA  K  A NR  A   A   G++
Sbjct: 167 LSEGTVRNHVSSAITKTQASNRYDAARIARDRGWL 201


>gi|209964709|ref|YP_002297624.1| nitrate/nitrite response regulator protein NarL [Rhodospirillum
           centenum SW]
 gi|209958175|gb|ACI98811.1| nitrate/nitrite response regulator protein NarL [Rhodospirillum
           centenum SW]
          Length = 228

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 17/159 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146
           +      E   +   RL   L     +     L   +    +           L+++ + 
Sbjct: 55  LDLVNGGEEEAEAMRRLRQALPNSRMVVLTTDLCTRRLSNALEAGADGYLMKDLSSDALT 114

Query: 147 --IEAHGACYQVITDFLE--LFKKR--------SSAARNLTERETSCLQLAGDGYTSEEI 194
             +       +V    L   L   R          + + L++RE   L+   +G +++ I
Sbjct: 115 QSLRLVMMGEKVFPTHLAALLISGRVNGNGLEMPVSRKGLSQREIQILRCLLNGDSNKMI 174

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A  L ++  TV  +L S   K++A NR QA   A+  G 
Sbjct: 175 ANHLNITEATVKVHLKSLLRKINASNRTQAAIWALNNGI 213


>gi|312141711|ref|YP_004009047.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311891050|emb|CBH50369.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 257

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 56/220 (25%), Gaps = 8/220 (3%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            ++ E   R+      +     A   +  + D          +  +  +           
Sbjct: 29  RTVPEFRTRIAAAMTDVFPVRVATCFVGDSYDSQFTDPDAALVGGHGWERNRPVYQEKWA 88

Query: 72  YGD----DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
             D                 +      + +   +        G     +  A  + L   
Sbjct: 89  RHDIFATPEARRRLEHNR--VASLADLQDLPAGAAAYVRDYLGAWGLRSVSAMHLDLPGR 146

Query: 128 KNGYV-IFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLA 185
               V +F  +   L    +         +      L    R      LTER+    +L 
Sbjct: 147 ARALVGLFDGDDSALGTRDLATLRLLARHLSALTRNLDTAPRRDPYAALTERQRDVARLV 206

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            DG ++  IA +L L+  TV  Y+          +R Q  
Sbjct: 207 ADGMSNAAIARRLMLAEDTVKKYVSRILAATGCASRTQLA 246


>gi|327188744|gb|EGE55942.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 207

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+ + L      +S   +LT RE   + L   G +++ I  +L L   TV  ++  
Sbjct: 130 MSTKVMENSLH---DAASDKTSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 186

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL   NR +A  +    
Sbjct: 187 ILSKLGVSNRTEAALQWRER 206


>gi|304398340|ref|ZP_07380214.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304354206|gb|EFM18579.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 209

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----------ACYQV 156
           L    +    +   V         ++       L  +   E                 + 
Sbjct: 73  LRHEGISSRILVLTVSDARSDIFAMVDAGADGYLLKDSEPEILLGHILQASRGEKVFSEG 132

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L+  +  +   R LT+RE   LQ    G +++EIA  L +S  TV  ++ +   KL
Sbjct: 133 VASYLDNRQHSADPLRLLTDRECDVLQEVARGLSNKEIAAILHISEETVKVHIRNLLRKL 192

Query: 217 DAVNRIQAIAKAIR 230
           D  +R+ A    + 
Sbjct: 193 DVRSRVAATVMWLE 206


>gi|298244409|ref|ZP_06968215.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551890|gb|EFH85755.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L L     T+ EI E+L LS  TV  ++ +   KL    R QAI +A   G
Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLVLSPKTVRNHVSNIFSKLQVATRAQAIIRAREAG 217

Query: 233 Y 233
           +
Sbjct: 218 W 218


>gi|302549505|ref|ZP_07301847.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467123|gb|EFL30216.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 42/84 (50%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V        + R+  +R +T+RE   L+L  +G+TS++IA+ L +S  TV  +  
Sbjct: 134 AVNALVRDFLDRAREGRALPSRAITDREEEILKLVAEGHTSQQIADLLVISPKTVERHRA 193

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R++    AIR G I
Sbjct: 194 NLLQKLGLKDRLELTRYAIRVGLI 217


>gi|320162117|ref|YP_004175342.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995971|dbj|BAJ64742.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 212

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 3/112 (2%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAARNLTERETSCL 182
               GY+   +    L   + +           V  + ++           LT RE   L
Sbjct: 98  AGARGYLWKDAPDEELIRAIRVAMSGEIYLPPGVSMEHIQALIAAQPPVERLTAREKQVL 157

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   G T++ IA +LG+S  TV  +      KLD  +       A+R G I
Sbjct: 158 ALLASGLTTQAIAVRLGVSPKTVETHRSHVMSKLDLYDIASLTRFALRHGLI 209


>gi|300784836|ref|YP_003765127.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794350|gb|ADJ44725.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 212

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +++  +     +R +     LT RE   ++    G T++EI   L +S+ TV  ++
Sbjct: 127 AITTRLLAHYARRAPRRVTPPESPLTPRELDVVKAVARGETNDEICRSLVVSMPTVKTHI 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
           G+A  KL   NR +    A   G +
Sbjct: 187 GAAKRKLGVRNRTEIAIWAWESGLV 211


>gi|293374136|ref|ZP_06620470.1| transcriptional regulator, LuxR family [Turicibacter sanguinis
           PC909]
 gi|325837421|ref|ZP_08166403.1| spore germination protein GerE [Turicibacter sp. HGF1]
 gi|292647239|gb|EFF65215.1| transcriptional regulator, LuxR family [Turicibacter sanguinis
           PC909]
 gi|325490953|gb|EGC93251.1| spore germination protein GerE [Turicibacter sp. HGF1]
          Length = 70

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE     L     T+ EIAE+L +S  TV  ++ +  +KL+   R QAI + ++ G 
Sbjct: 8   LTKREQEIFNLLVRNMTTSEIAEELKISEKTVRNHISNVILKLNVKGRSQAIIELLKLGV 67

Query: 234 I 234
           I
Sbjct: 68  I 68


>gi|288936699|ref|YP_003440758.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288891408|gb|ADC59726.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22]
          Length = 227

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 12/220 (5%)

Query: 10  KSSSLQELSPR-LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           K+S    +  R L  I   I   +   Y +N+ L     +     LHN   ++       
Sbjct: 6   KASRNDAIIARCLQTISQLIPLTSAVFYRVNNRL-----KPESYILHNISDNTHQQYLE- 59

Query: 69  IETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                D  L  HF+     +   +     + + +                    +R    
Sbjct: 60  NFQPLDPLLPSHFSHQNTTV---AAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERR 116

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               +      +  ++E    A      V     +  ++       LT +E   + +  +
Sbjct: 117 IIAGISLMR-DVPFSSEERQRAQAVLPLVELAIRDCLQEDDDLPAILTAKEREIVGMVRE 175

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G +++ IA +L +S+ TV  +L +   K + VNR + +++
Sbjct: 176 GASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215


>gi|302560744|ref|ZP_07313086.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302478362|gb|EFL41455.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +  +   + A + ++        +           ++    L++RE   L L   G
Sbjct: 110 RPAELLDAIRTVAAGDALLSPGPTARLIERFLRTPPAPVTAGPECLSDREREVLALVARG 169

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             + EIA+ LGLS  T   ++     +L A +R Q +  A   G +
Sbjct: 170 LNNTEIADSLGLSPLTAKTHVSRIMGRLGARDRAQLVIVAYESGLV 215


>gi|297197731|ref|ZP_06915128.1| response regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|197716240|gb|EDY60274.1| response regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 215

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 39/109 (35%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++   +   L + +   A G           L  +  S    L+ RE   L   
Sbjct: 106 AGAIGYLLKAEQPEELFSAIRDAASGRGALSAPVADRLLTRLRSPRPALSAREHEILAQL 165

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 166 ARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVAKERRLL 214


>gi|148546040|ref|YP_001266142.1| regulatory protein LuxR [Pseudomonas putida F1]
 gi|148510098|gb|ABQ76958.1| regulatory protein, LuxR [Pseudomonas putida F1]
          Length = 905

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 42/87 (48%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +++     +    +     L+ RE + L+L   G ++++I+E+L +S+HTV  
Sbjct: 818 AACPVQAELLKHLPPVPIASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKT 877

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +      KL    R QA+AKA   G +
Sbjct: 878 HASHINSKLGVERRTQAVAKAKSLGLL 904


>gi|85059257|ref|YP_454959.1| putative two-component response regulator [Sodalis glossinidius
           str. 'morsitans']
 gi|84779777|dbj|BAE74554.1| putative two-component response regulator [Sodalis glossinidius
           str. 'morsitans']
          Length = 211

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L  DGYT+  IAE+L +SV TV  +  +   KL+     + +  + R 
Sbjct: 148 ELLTPRERQILKLIADGYTNRLIAEQLCISVKTVETHRLNIMRKLNVHKVTELLNCSRRL 207

Query: 232 GY 233
           G 
Sbjct: 208 GL 209


>gi|332528686|ref|ZP_08404663.1| two-component response regulator [Hylemonella gracilis ATCC 19624]
 gi|332041752|gb|EGI78101.1| two-component response regulator [Hylemonella gracilis ATCC 19624]
          Length = 221

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+R+   L     G +++EIA  + L+ +TV  ++ +    L+ ++R QAI +A   
Sbjct: 157 HGLTKRQHQVLARLCQGLSNKEIARDMNLTHNTVKTHISAIFKALNVMSRTQAIVEARLR 216

Query: 232 GYI 234
           G +
Sbjct: 217 GIV 219


>gi|315180008|gb|ADT86922.1| transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 212

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G++S++IA  L +S  TV  +  +   KLD  +  +    A + G
Sbjct: 150 PLSRREEAVLKLVAQGHSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAHYASQRG 209

Query: 233 YI 234
            +
Sbjct: 210 LL 211


>gi|296332888|ref|ZP_06875348.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673234|ref|YP_003864906.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150168|gb|EFG91057.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411478|gb|ADM36597.1| two-component response regulator (paired with YdfH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 213

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              ++    LE  KK+SS  + LTE+E   L+    G+ S+ IA  LG+S  TV + L S
Sbjct: 128 ILKRLQEIRLEQMKKQSSDTQ-LTEKEVIVLKAIAKGFKSKAIAFDLGVSERTVKSRLTS 186

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A +R +A+  A++ G +
Sbjct: 187 IYNKLGANSRTEAVTIAMQRGIL 209


>gi|284992805|ref|YP_003411359.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066050|gb|ADB76988.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 218

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 6/160 (3%)

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            L    + L  + W ++      E    +             +   +     ++      
Sbjct: 64  VLETLRAELPSVRWLALSVSDAAEDVIAVI-----RAGARGYVTKSISGPDLRDAVARVA 118

Query: 136 SEFLMLANEVI-IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              ++ +  +             +               L+ RE   +QL   GYT  EI
Sbjct: 119 DGDVVFSPRLAGFVLDAFAATTPSAPQPEDPATDPGLDLLSAREREVMQLLARGYTYREI 178

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L +SV TV ++  +   KL   NR +    A     +
Sbjct: 179 GSRLFISVKTVESHASNVLRKLQLSNRNELTRWAATNRLL 218


>gi|225387858|ref|ZP_03757622.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme
           DSM 15981]
 gi|225046041|gb|EEG56287.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme
           DSM 15981]
          Length = 210

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + +      +    A NLT+RE   ++L   G  + EIA  L L+  TV   L     KL
Sbjct: 133 LRETASAKPEPGPGAFNLTDRERDIVRLVAQGMDNREIARTLYLAEGTVRNNLSRVLEKL 192

Query: 217 DAVNRIQAIAKAIRFGY 233
           +  +R Q    A++   
Sbjct: 193 ELKDRTQLAVFAVKNNL 209


>gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 307

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
            +     L P       +         + F+    + A+E +        +     L   
Sbjct: 186 FMSERARLGPARDNLVSIS--NGGQAALQFSFLGAIGADEYLFRLTATNQRADDGVLRQH 243

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                   +LT+RE+  L     G ++ +I E LGLS  TVN +L    VKL   NR  A
Sbjct: 244 F-------SLTQRESEVLLWIAKGKSNRDIGEILGLSARTVNKHLEQIYVKLGVENRASA 296

Query: 225 IAKA 228
             KA
Sbjct: 297 AVKA 300


>gi|184201279|ref|YP_001855486.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581509|dbj|BAG29980.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 207

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
             L  +  + A +L+ RE   L+    G ++  +A+ L +S  TV  +L     KL   N
Sbjct: 134 ARLMTQVRTPAASLSPREIEILRGLATGASNRALAKSLFISEATVKTHLVHIYDKLGVDN 193

Query: 221 RIQAIAKAIRFGYI 234
           R  A+++A     I
Sbjct: 194 RTAAVSRAREEHVI 207


>gi|317483987|ref|ZP_07942923.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924776|gb|EFV45926.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 218

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++ +S    LT+RE   L+L  +G +++EIA +L ++  TV  +  +   KL   N  + 
Sbjct: 144 EEIASPLAQLTQREREILKLVAEGCSNKEIAARLSVAEKTVVTHRTNFMRKLGLRNVREV 203

Query: 225 IAKAIRFGYI 234
              A+  G I
Sbjct: 204 TMFALECGLI 213


>gi|300934384|ref|ZP_07149640.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium resistens DSM
           45100]
          Length = 241

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE     L   G  + EIAEKL +S+ TV  ++     KL A NR+Q IA A+  
Sbjct: 182 EALSPREKEIALLIAQGLGNAEIAEKLFISMPTVKTHVARILEKLQASNRVQ-IAIAVIR 240

Query: 232 G 232
           G
Sbjct: 241 G 241


>gi|205374169|ref|ZP_03226968.1| hypothetical protein Bcoam_13554 [Bacillus coahuilensis m4-4]
          Length = 199

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  S    LA+ +     G          EL +   +    LTERE   L L 
Sbjct: 94  AGVMGYLLKDSPSEELASSIRRIMQGKRIYA----PELIEDVYTEQNPLTEREIEVLGLV 149

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  + EIA +L +   TV  Y+ +   KL+  NRI+AI ++   G+
Sbjct: 150 ADGKNTNEIANELSIKAGTVRNYISAILDKLEVKNRIEAITQSKEKGW 197


>gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 229

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A  +++     + +       + T RE S L L   G  ++EIA +L  SV  V  Y+  
Sbjct: 146 AIREMLAQRGNISQTPPPIRIDFTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSR 205

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              K    +R + +  A+  G 
Sbjct: 206 LFSKTGTNSRTELVRYALEHGL 227


>gi|94984423|ref|YP_603787.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554704|gb|ABF44618.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 214

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +   +  +   + + E +++A  A   +     +  +  S    +L ERET  L+L   G
Sbjct: 106 DAATLLDAIRRVASGEALLDADLAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQG 165

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +++++IA +L +S  TV   L     KL   NR QA   AIR G 
Sbjct: 166 FSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|322386825|ref|ZP_08060449.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321269107|gb|EFX52043.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 199

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +    L+ +E   L+ A  G +++EIAEKL LS  T+  Y+ +   KL A NR
Sbjct: 127 ELMEVLMTHKNPLSHQELLVLEAAATGLSNKEIAEKLYLSNGTIRNYMSTILTKLAADNR 186

Query: 222 IQAIAKAIRFGYI 234
            +A+  A   G+I
Sbjct: 187 TEAVRIAQEQGWI 199


>gi|289645062|ref|ZP_06477093.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289505136|gb|EFD26204.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 216

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +VI  F       +     LT RE   + L G G +++EIA++L +S  T   ++    V
Sbjct: 134 RVIDAFARRPAVHTPDLSGLTAREREVMGLVGRGLSNDEIAQRLFISPATARTHVSRVMV 193

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A +R Q    A + G +
Sbjct: 194 KLGARDRAQLAVLANQAGMV 213


>gi|209551570|ref|YP_002283487.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537326|gb|ACI57261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 260

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R  +  +LT RE   L L   G  ++ IA+KL LS +TV  ++ +   K++  NR +A +
Sbjct: 182 RRDSISSLTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKMNVRNRTEAAS 241

Query: 227 K 227
           +
Sbjct: 242 R 242


>gi|167640433|ref|ZP_02398697.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|254735503|ref|ZP_05193211.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|167511653|gb|EDR87035.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
          Length = 200

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|219850206|ref|YP_002464639.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219544465|gb|ACL26203.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 219

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 31/76 (40%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D L       +    LT RE   L L   G  +  IA KL L+  TV   L     KL  
Sbjct: 138 DLLRRNDNAPALHEVLTPRERDILALVAQGDDNRAIALKLSLAEKTVGNRLSEIFQKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            NR QA   A++ G +
Sbjct: 198 SNRTQAAIVAVQRGLV 213


>gi|331695587|ref|YP_004331826.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950276|gb|AEA23973.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 219

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 151 GACYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           G    V+ ++  L  + +       A   LTERET  L+L   G T+  I E+LGLS  T
Sbjct: 128 GLAGLVLGEYRRLADEPARRPAGDPAVPALTERETGVLRLVAKGLTARAIGERLGLSHRT 187

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V +++ +   KL   NR Q +  AI  G 
Sbjct: 188 VESHVQNTLRKLQLHNRAQLVRYAIEQGL 216


>gi|319948854|ref|ZP_08022967.1| regulatory protein, LuxR [Dietzia cinnamea P4]
 gi|319437456|gb|EFV92463.1| regulatory protein, LuxR [Dietzia cinnamea P4]
          Length = 203

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V  G           E L+   E I                      +    L+ RE   
Sbjct: 88  VAAGARGFLAKSLVGEELVAGIERIAAGETLTAPARDGDTGPHAVWPAGDSGLSPREAEM 147

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L L   G ++E+IA    LS++TV +Y+  A  K+    R QA+A A++ G+
Sbjct: 148 LALIAQGLSNEDIATACYLSINTVKSYIRDAYRKIGVTTRPQAVAWALKNGF 199


>gi|320011210|gb|ADW06060.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 229

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L     G+++++IA++L +S  TV  ++  A  KL A +R Q +  
Sbjct: 158 AERLAALTGREREVLVQVAGGHSNDQIADRLVVSPLTVKTHVNRAMAKLGARDRAQLVVI 217

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 218 AYESGLV 224


>gi|229156784|ref|ZP_04284871.1| Two-component protein Kinase [Bacillus cereus ATCC 4342]
 gi|228626704|gb|EEK83444.1| Two-component protein Kinase [Bacillus cereus ATCC 4342]
          Length = 595

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +     + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKEPPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|226941833|ref|YP_002796907.1| two-component response regulator [Laribacter hongkongensis HLHK9]
 gi|226716760|gb|ACO75898.1| Probable two-component response regulator [Laribacter hongkongensis
           HLHK9]
          Length = 196

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 8/153 (5%)

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
             L   +   L +  + I   +   +   ++    G        + P           + 
Sbjct: 50  PGLAACDWPGLCLHGRVIALSSAPSNPEGVAWITRGAAGYAHAYSTP------DLLKQVV 103

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +     +          C QV                 LTERE   +Q    G  ++EI
Sbjct: 104 ATVASGASWIGRDLLGLLCMQVGNHLSR--DGIDGPGALLTEREREVVQALRRGLANKEI 161

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A +L +S +TV  +L S   KL   +R+Q + K
Sbjct: 162 ARELDISENTVKKHLSSVFQKLGVEDRLQLLIK 194


>gi|225867334|ref|YP_002752712.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790979|gb|ACO31196.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 200

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|118480385|ref|YP_897536.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045516|ref|ZP_03112747.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|118419610|gb|ABK88029.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023723|gb|EDX62399.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 200

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|47569776|ref|ZP_00240448.1| two-component response regulator yocG [Bacillus cereus G9241]
 gi|47553572|gb|EAL11951.1| two-component response regulator yocG [Bacillus cereus G9241]
          Length = 189

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|308187717|ref|YP_003931848.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans
           C9-1]
 gi|308058227|gb|ADO10399.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans
           C9-1]
          Length = 209

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 11/134 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----------ACYQV 156
           L    +    +   V         ++       L  +   E                 + 
Sbjct: 73  LRHEGISSRILVLTVSDARSDIFAMVDAGADGYLLKDSEPEILLGHILQASQGEKVFSEG 132

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L   +  +   R LT RE   LQ    G +++EIA  L +S  TV  ++ +   KL
Sbjct: 133 VARYLANRQHSADPLRQLTGRECDVLQEVARGLSNKEIAANLHISEETVKVHIRNLLRKL 192

Query: 217 DAVNRIQAIAKAIR 230
           D  +R+ A    + 
Sbjct: 193 DVRSRVAATVMWLE 206


>gi|288919771|ref|ZP_06414097.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288348871|gb|EFC83122.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 135

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 32/69 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L        A   L +RE   LQL  DG T+ +I  +LGLS  TV  Y+ S   KL  
Sbjct: 60  ERLRDGPHEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGL 119

Query: 219 VNRIQAIAK 227
            +R QA   
Sbjct: 120 ASRTQAAVY 128


>gi|291614188|ref|YP_003524345.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584300|gb|ADE11958.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 235

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 19/160 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +  +L         +   +       G  I           +A E ++
Sbjct: 55  VDLRMKPMDGLAMIEQLRKEGCDIPAVLLTMSDSEVDLGNAIRAGVRGYLLKDMAPEEVV 114

Query: 148 EAHGACYQ-----------VITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEE 193
           +A                  + D L   +       +L   TERE   LQL   G +++ 
Sbjct: 115 DAIRRVAAGELVVAPTMTVKMIDMLRGDQSGQEPKNSLKLLTEREREILQLLSRGESNKA 174

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI-QAIAKAIRFG 232
           IA  L +S  TV  ++     KL+  +R+  A+  A   G
Sbjct: 175 IALTLSISYDTVKQHVRHILNKLNLSSRVKAAVLFAKEQG 214


>gi|65317330|ref|ZP_00390289.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
          Length = 200

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|329939332|ref|ZP_08288668.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329301561|gb|EGG45455.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 230

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSC 181
                       ++A+   + A     ++IT+F  L +     A        LTERET  
Sbjct: 115 DASARQLAEGVRVVASGEALLAPSVTRRLITEFSRLAEAPRLPAAAPGAYGELTERETEV 174

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G ++ EIA +L ++  T+  ++    VKL   +R QA   A     +
Sbjct: 175 LILIAQGLSNAEIAGRLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 227


>gi|297161527|gb|ADI11239.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 43/97 (44%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L+  ++ ++                  +  +    L+ERE   L+L   G ++ EIA++
Sbjct: 125 RLVARSDSLLFPAAVRALAAAYATGRDGQAQALRDRLSEREAEVLRLMTTGLSNAEIADR 184

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L ++  TV  ++ +   KL   +R QA+  A   G++
Sbjct: 185 LTVAPATVKTHVATVLAKLGVRDRTQAVIAAYECGFV 221


>gi|261404049|ref|YP_003240290.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261280512|gb|ACX62483.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 203

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 47/98 (47%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +         I       + ++  L       + A  LTERE   L+LA DG +S +IA 
Sbjct: 106 DEPSERLAEAIRRVMGGRREVSPELVFGTLSGAGANPLTEREREVLRLAADGNSSNDIAA 165

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KL LS  TV  Y+     KL+A NRI+AI+ A   G+I
Sbjct: 166 KLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKGWI 203


>gi|226308907|ref|YP_002768867.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226188024|dbj|BAH36128.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 209

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 9/158 (5%)

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE----F 138
              P +     +        +   RL    +    + F            +         
Sbjct: 48  SASPDLVMMDLDMGTGMHGAEAIKRLRSDGVDVPVLVFTTYDTDADVVRAVDAGAIGYLL 107

Query: 139 LMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                + I  A        +         L ++       LT RE+  L L  +G T+ E
Sbjct: 108 KDSTPDEIFGAVRGAVAGRSVLSPTVASRLVQQMQRPQEALTARESELLSLLAEGMTNRE 167

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + + L +S  TV  +LG    KL    R  A++ A+R 
Sbjct: 168 LGKALFISEATVKTHLGHIYAKLGVETRSAAVSVALRR 205


>gi|295838502|ref|ZP_06825435.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197699551|gb|EDY46484.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 234

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG 151
           +V++   +L + +E        +A  V         VI           +    ++ A  
Sbjct: 82  SVLQRCAELVMDVEKP---VRFLALSVSDAAEDVIGVIRAGSRGYVTKAINGTELVAAIH 138

Query: 152 A--------CYQVITDFLELFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKL 198
                      ++    L+ F   +          LT+RE   L+L   G++ +EIA++L
Sbjct: 139 RVKEGDAVFSPRLAGFVLDAFSNNTVPPVDEELDKLTQRERDVLRLIARGHSYKEIAKEL 198

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +SV TV +++ +   KL   NR +    A     +
Sbjct: 199 FISVKTVESHVSAVLRKLQLSNRHELTRWAAARRLV 234


>gi|118590980|ref|ZP_01548380.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118436502|gb|EAV43143.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 217

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L +  +     LT+RE   L L   G +++EIAE LG+S+ TV+ +  S   KL+  +  
Sbjct: 142 LEETPAPPV--LTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLMQKLNVHSVP 199

Query: 223 QAIAKAIRFGYI 234
           Q +AKA++ G I
Sbjct: 200 QLMAKALKEGMI 211


>gi|113970560|ref|YP_734353.1| transcriptional regulator NarL [Shewanella sp. MR-4]
 gi|113885244|gb|ABI39296.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 221

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 156 VITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            I   L    + +  A      +LT RE   ++L   G +++ IA KL ++  TV  ++ 
Sbjct: 138 AIAPILATGLRHNPPATKRDIESLTAREKDIIRLVSQGLSNKMIARKLIITEGTVKVHVK 197

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +R++A    ++   
Sbjct: 198 NLLKKLSFKSRVEATVWILQENI 220


>gi|114047794|ref|YP_738344.1| transcriptional regulator NarL [Shewanella sp. MR-7]
 gi|113889236|gb|ABI43287.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 221

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 156 VITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            I   L    + +  A      +LT RE   ++L   G +++ IA KL ++  TV  ++ 
Sbjct: 138 AIAPILATGLRHNPPATKRDIESLTAREKDIIRLVSQGLSNKMIARKLIITEGTVKVHVK 197

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +R++A    ++   
Sbjct: 198 NLLKKLSFKSRVEATVWILQENI 220


>gi|126698866|ref|YP_001087763.1| two-component response regulator [Clostridium difficile 630]
 gi|255100287|ref|ZP_05329264.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306226|ref|ZP_05350398.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115250303|emb|CAJ68125.1| Two-component response regulator [Clostridium difficile]
          Length = 215

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLTE+E S ++L  +G  ++EI+++L LS  T+   + +   KL+  +R Q    A +  
Sbjct: 152 NLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILAKLELRDRTQLAIFAFKNK 211

Query: 233 YI 234
            +
Sbjct: 212 IV 213


>gi|319939711|ref|ZP_08014069.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811129|gb|EFW07438.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 199

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   ++   L+ +E   LQ A  G +S+EIA+KL LS  T+  Y+ S   KL A NR
Sbjct: 127 ELMEAMMTSKNPLSNQEILVLQAAARGLSSKEIAQKLYLSNGTIRNYMSSILTKLTAENR 186

Query: 222 IQAIAKAIRFGYI 234
           ++A+  A   G+I
Sbjct: 187 LEAVRIAQENGWI 199


>gi|318605143|emb|CBY26641.1| transcriptional regulatory protein UhpA [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 209

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      ES   L  RL   +  F  I   +             G   + ++   
Sbjct: 48  VHVAVMDISMPDESGLSLLKRLRQKMPQFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107

Query: 141 LAN--EVIIEAHGACYQVITDFLEL---FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                + +   HG    +  D L       ++      LT RE    QL  +G + + IA
Sbjct: 108 PDELVQALRTVHGGGLYLCADALRALRHMPQQPQQLAILTPREKDVFQLLINGISVKSIA 167

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+L LS  TV+ +  +   KL+    ++ +  A++   +
Sbjct: 168 EQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|300789707|ref|YP_003769998.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799221|gb|ADJ49596.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 221

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAE 196
            ++A    + A     ++I +F     + +   A   LT+RE   L L   G +++EIA 
Sbjct: 117 RVVARGDALLAPSITRRLIAEFAARGTRPAASPALDRLTDREREVLSLVAAGLSNDEIAR 176

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L LS  T   ++     K    +R Q +  A   G
Sbjct: 177 ELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESG 212


>gi|295395667|ref|ZP_06805859.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971483|gb|EFG47366.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 223

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            L+ RET  + L  DG  + +IAE   LS  TV  ++     K++  +R +A++  ++ 
Sbjct: 165 GLSRRETEVMVLVADGLNNRQIAESFFLSEKTVKNHINRIFAKMNVTSRAEAVSIWLKR 223


>gi|291301282|ref|YP_003512560.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570502|gb|ADD43467.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 206

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 41/109 (37%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           + +        LT RE   L+  
Sbjct: 96  AGARGYLLKAGPPEELFTAIRAAARGEPVLSPAVADSMMRHLRQPRTTLTSREVEILRAL 155

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++  IA++L ++  TV  +L     KLD  +R  A+A A+    I
Sbjct: 156 ARGDSNRAIAKRLFITEATVKTHLVHIYAKLDVDSRTAAVAAALERRLI 204


>gi|183601991|ref|ZP_02963360.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682902|ref|YP_002469285.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190478|ref|YP_002967872.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195884|ref|YP_002969439.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218876|gb|EDT89518.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620552|gb|ACL28709.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248870|gb|ACS45810.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250438|gb|ACS47377.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178205|gb|ADC85451.1| Transcriptional regulatory protein [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793465|gb|ADG33000.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +   +L+ RE   ++L   GYT +E+  +L +SV TV  ++ +   KL   NR +    A
Sbjct: 171 AELDSLSTREQEVMRLIARGYTYKEVGAELFISVKTVETHVSNVLRKLQLSNRNELTLWA 230

Query: 229 IRFGYI 234
                +
Sbjct: 231 ADRHIV 236


>gi|42524246|ref|NP_969626.1| two-component response regulator-like protein [Bdellovibrio
           bacteriovorus HD100]
 gi|39576454|emb|CAE80619.1| two-component response regulator homolog [Bdellovibrio
           bacteriovorus HD100]
          Length = 226

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   +++   G T++E+A  L  S HT+  +  +   KL+  N ++    A++   
Sbjct: 166 LTPRELEVVRMIAQGKTNKEVAACLECSEHTIKTHKTNVMRKLNLSNAVEISVWALKRNL 225


>gi|298247435|ref|ZP_06971240.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550094|gb|EFH83960.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 234

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                      +L   V+        Q     L     RSS    L+ERE   L+    G
Sbjct: 130 QAIRSAARGETLLQPGVVARLLSRASQERRPSL---GTRSSGEGELSERELEVLRKVASG 186

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             S+EIA +LG+S+ TV A+L S   KL   +R  A+A A+  G +
Sbjct: 187 ERSKEIAAQLGISLRTVGAHLTSIYTKLGVDSRTSAVAVALERGLL 232


>gi|295676073|ref|YP_003604597.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
 gi|295435916|gb|ADG15086.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 293

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L+ L  ++  +    +A  + L         P    ++ +  N+          
Sbjct: 10  AERRDGLKALLRQIDRLARFTEADEWRLLERPFKRYRPD--LVVIDWENWMS--VAQVRA 65

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           L+  + D  +     G LP + +++ +E V+    + +       +  A     +   + 
Sbjct: 66  LLSHFPDLRISVLTDGTLPALVRALMDEGVLGVVPRDTDPCL---IVRALEMVLLGGHYV 122

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
             G +        L  +  I           D      +R+  +  L+ R+   ++    
Sbjct: 123 PPGALAI---DPPLPTDTAIRT--------FDEESPPPRRNKLSSGLSPRQEQIMRCVHM 171

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T++ IA  LG+S  TV  +L S   +L A NR  A+  A+  G++
Sbjct: 172 GSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|297566766|ref|YP_003685738.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851215|gb|ADH64230.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 192

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 1/137 (0%)

Query: 99  ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT 158
                +S         +AG+   V             +          +      +++  
Sbjct: 56  PKRDGISACRALREGGYAGLIAMVTTFHEPALVHQAATAGADAYWSKEMPPDELAHRLRR 115

Query: 159 DFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               L  + R+     LT RE + L+L   G +++E+A++LGLS  TV  +L     KL 
Sbjct: 116 LQKGLEPRLRAPDLPELTPREKTVLRLLVQGLSTKEMAQELGLSPDTVKDHLERLYGKLS 175

Query: 218 AVNRIQAIAKAIRFGYI 234
           A NR++A+ +A   G++
Sbjct: 176 ARNRVEALERARGLGFL 192


>gi|71907204|ref|YP_284791.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71846825|gb|AAZ46321.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 218

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 126 FHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELF----KKRSSAARNLTERET 179
              +GY+   S   +LA+    + +      Q + + L L     +   +    LT+RE 
Sbjct: 96  AGASGYLCKDSAETLLADAIRKVADGGLFINQAVAEKLTLQILHGRDTDAPHTGLTDREH 155

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               +   G    EI  +L LSV TV+ +  S   K++  N  + +  AI+   I
Sbjct: 156 QIFLMILQGLGVTEIGRQLNLSVKTVSTHKASILAKMNLRNSAELVRYAIQHRLI 210


>gi|21222754|ref|NP_628533.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|10129764|emb|CAC08319.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 226

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +        + +  +     A  +           R     +LT RE   L L G G +
Sbjct: 123 AIRAAGAGQSVLDREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLS 182

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  IAEKL +S  TV  ++ +   K    +R  A+ +AI  G 
Sbjct: 183 NRGIAEKLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225


>gi|332716106|ref|YP_004443572.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062791|gb|ADY66481.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 256

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            D L + K   +A   LT RE   L L   G  ++ IA++L LS +TV  ++ +   K++
Sbjct: 175 ADALAVSKSEMAA---LTTREVQILDLLCKGTQNKIIADRLHLSENTVKVHVRNIYKKMN 231

Query: 218 AVNRIQAIAK 227
             NR +A ++
Sbjct: 232 VRNRTEAASR 241


>gi|323154780|gb|EFZ40977.1| bacterial regulatory s, luxR family protein [Escherichia coli
           EPECa14]
          Length = 123

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT  E+  LQL  DG T++EIA  L LS  TV  +  +   KLD  + I+ I 
Sbjct: 54  RYSSDNQLTNSESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIK 113

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 114 TALRMG-VC 121


>gi|322377956|ref|ZP_08052444.1| putative DNA-binding response regulator VraR [Streptococcus sp.
           M334]
 gi|321281132|gb|EFX58144.1| putative DNA-binding response regulator VraR [Streptococcus sp.
           M334]
          Length = 201

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLM-LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           +       G   F  +    L  +  I A      VI D L L K+ +     LT+ E S
Sbjct: 90  LHKRAMDFGIQAFLPKESSYLDVKSAIYAVYKGNHVIPDGL-LEKQEN---NLLTDMELS 145

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+L    Y++E+IA  L +S  TV+ ++ +   KL   +R+ A+ +AIR   +
Sbjct: 146 VLELIVKEYSNEKIANSLFVSRRTVDTHVSNICSKLGVTSRVGAVREAIRLNLV 199


>gi|302559849|ref|ZP_07312191.1| LuxR family DNA-binding response regulator [Streptomyces
           griseoflavus Tu4000]
 gi|302477467|gb|EFL40560.1| LuxR family DNA-binding response regulator [Streptomyces
           griseoflavus Tu4000]
          Length = 230

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                +        + R+  A+ +T+RE   L+L  +G+TS++IA  L +S  TV  +  
Sbjct: 145 AVNALIHNYLDLAREGRALPAKAITDREEEILKLVAEGHTSQQIAGLLVISPKTVERHRA 204

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R++    AIR G I
Sbjct: 205 NLLAKLGLRDRLELTRYAIRVGLI 228


>gi|302529018|ref|ZP_07281360.1| response regulator [Streptomyces sp. AA4]
 gi|302437913|gb|EFL09729.1| response regulator [Streptomyces sp. AA4]
          Length = 220

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G  + EIA +L +S  TV  ++     K     R QA+  A + 
Sbjct: 157 DGLTAREVDVLKLVAGGRRNREIARELQVSEATVKTHVNRIFAKTGCGTRAQAVRYAHQH 216

Query: 232 GY 233
           GY
Sbjct: 217 GY 218


>gi|229176028|ref|ZP_04303523.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607460|gb|EEK64787.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 189

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|226357105|ref|YP_002786845.1| response regulator NarL [Deinococcus deserti VCD115]
          Length = 216

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            + A E +++A  A   +     +  +  S    +L ERET  L+L   G+++++IA +L
Sbjct: 118 RVAAGEALLDADMAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQGFSNQDIALRL 177

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +S  TV   L     KL   NR QA   AIR G 
Sbjct: 178 DISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 212


>gi|329928019|ref|ZP_08282023.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
 gi|328938123|gb|EGG34520.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
          Length = 191

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 47/98 (47%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +         I       + ++  L       + A  LTERE   L+LA DG +S +IA 
Sbjct: 94  DEPSERLAEAIRRVMGGRREVSPELVFGTLSGAGANPLTEREREVLRLAADGNSSNDIAA 153

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KL LS  TV  Y+     KL+A NRI+AI+ A   G+I
Sbjct: 154 KLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKGWI 191


>gi|148272422|ref|YP_001221983.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830352|emb|CAN01286.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 224

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +A   +  A      ++          ++    L+ RET  L L   G T+  IA +L
Sbjct: 120 RAVARGEVALAPAIAAALVRQVGRPAAGPATPTPTLSPRETEVLALVAAGRTNARIAREL 179

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  TV  +L     KL   +R +A+  A+  G +
Sbjct: 180 HVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215


>gi|13472199|ref|NP_103766.1| response regulatory protein [Mesorhizobium loti MAFF303099]
 gi|14022944|dbj|BAB49552.1| respose regulatory protein [Mesorhizobium loti MAFF303099]
          Length = 211

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              +A   L+ RE   L L  +G  ++ IA +L +SVHT   ++ +  +KL A NR  AI
Sbjct: 141 DEHAARPALSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAI 200

Query: 226 AKAIRFGYI 234
           A A+R G +
Sbjct: 201 AIAMRQGLV 209


>gi|189461600|ref|ZP_03010385.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136]
 gi|189431710|gb|EDV00695.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136]
          Length = 202

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 35/75 (46%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +   ++  S    L++RE   +     G T++EIAEKL +SVHTV  +  + T KL   
Sbjct: 119 LMNFAEEDDSGQDTLSQREKEIIGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIH 178

Query: 220 NRIQAIAKAIRFGYI 234
           +       AI    +
Sbjct: 179 SAAGLTIYAIVNKLV 193


>gi|254976785|ref|ZP_05273257.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-66c26]
 gi|255094171|ref|ZP_05323649.1| salavaricin two-component response regulator [Clostridium difficile
           CIP 107932]
 gi|255315923|ref|ZP_05357506.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-76w55]
 gi|255518582|ref|ZP_05386258.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-97b34]
 gi|255651702|ref|ZP_05398604.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-37x79]
 gi|306521501|ref|ZP_07407848.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-32g58]
          Length = 200

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT  E   LQL   G   + IA++L +S  T++ +L     KLD  + ++AI KAI+ 
Sbjct: 134 EDLTNMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIKM 193

Query: 232 GYI 234
           GYI
Sbjct: 194 GYI 196


>gi|260684735|ref|YP_003216020.1| salavaricin two-component response regulator [Clostridium difficile
           CD196]
 gi|260688393|ref|YP_003219527.1| salavaricin two-component response regulator [Clostridium difficile
           R20291]
 gi|260210898|emb|CBA66091.1| salavaricin two-component response regulator [Clostridium difficile
           CD196]
 gi|260214410|emb|CBE06831.1| salavaricin two-component response regulator [Clostridium difficile
           R20291]
          Length = 206

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT  E   LQL   G   + IA++L +S  T++ +L     KLD  + ++AI KAI+ 
Sbjct: 140 EDLTNMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIKM 199

Query: 232 GYI 234
           GYI
Sbjct: 200 GYI 202


>gi|312195094|ref|YP_004015155.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226430|gb|ADP79285.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 371

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 10/229 (4%)

Query: 9   KKSSSLQELS-PRLHLIQNRIKARNFALYTINSALDFPRRQQL---ICELHNYDLDSGDI 64
           +++++L       L  +   +  RN A + +   L+   +                  D 
Sbjct: 132 ERAATLPAFREAVLDAMSRHLGYRNSAFF-LGPTLEAAFQDPRPSGRGLALRMAGPFLDR 190

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
              L E + D            +  + +      E   +   R        + +   +  
Sbjct: 191 YRGL-EVFSDPESLRLIRERGLVTLEDVGNPARPEIRLR-MERFLRAHGIHSELLLRLAG 248

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSC 181
             +    +                      + + + L    +     +    L+ RE   
Sbjct: 249 PANIGAVISLLDPRPGAFGPRDRAIAAVLGRHLGNLLRFHVRANTGPAVTAKLSARERDV 308

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           ++L  +G+++ ++AE L +S+ TV  +L  A V     NR Q      R
Sbjct: 309 VRLVAEGHSNRQVAEALCISIDTVKHHLTHALVATACTNRTQLALAWQR 357


>gi|302189119|ref|ZP_07265792.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
          Length = 909

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAA---RN 173
           + P   G     + +  +E     +E +++         ++             A     
Sbjct: 788 SLPAASGGALIPFKVLLAEHPQWLHEQLLQLPPCRVRAALLEKLPACCTPSPEPAHGSDC 847

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R QA+A+A   G 
Sbjct: 848 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGL 907

Query: 234 I 234
           +
Sbjct: 908 L 908


>gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium
           UCYN-A]
 gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family
           [cyanobacterium UCYN-A]
          Length = 233

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE S L L  +G  ++EIA +L  SV  V  Y+     K +  +R + +  A++ G 
Sbjct: 171 LTPREKSVLDLVAEGLMNKEIAARLNTSVRNVEKYVSRLFGKTETNSRTELVRFALKHGL 230


>gi|229588468|ref|YP_002870587.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360334|emb|CAY47191.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 909

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + A   L+ RE + L+L   G +++EI+ +L +S+HTV  +      KL    R QA+A+
Sbjct: 842 APAHETLSARELAVLKLIAQGCSNQEISNQLFISLHTVKTHASHINSKLGVERRTQAVAR 901

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 902 AKAMGLL 908


>gi|218231458|ref|YP_002370129.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159415|gb|ACK59407.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 200

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|121535873|ref|ZP_01667671.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121305538|gb|EAX46482.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 216

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           + +   L    +     + L+++E   L L   GY + EIAE+L +SV TV  Y      
Sbjct: 133 KAVVAELTERPRADDLRKPLSDQEKKVLSLIAAGYANREIAEQLVISVKTVETYKYRIME 192

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+   R   +  A+  G +
Sbjct: 193 KLNCKKRSDLVKFALDNGLL 212


>gi|85373778|ref|YP_457840.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
 gi|84786861|gb|ABC63043.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
          Length = 225

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +   ++ +   + L+ R+     L   G  ++E+A +LGLS  TV  + G    KL+   
Sbjct: 153 MARRERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKLNLKT 212

Query: 221 RIQAIAKAIRFGY 233
               +  A+  G 
Sbjct: 213 SADLVRIAVEAGI 225


>gi|325282015|ref|YP_004254557.1| two component transcriptional regulator, LuxR family [Odoribacter
           splanchnicus DSM 20712]
 gi|324313824|gb|ADY34377.1| two component transcriptional regulator, LuxR family [Odoribacter
           splanchnicus DSM 20712]
          Length = 223

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               ++ERE   L     G +++EIA+KL +S  TV+ +  +   K    N    +  AI
Sbjct: 157 PDNEISERELEILYHVCLGLSNQEIADKLFISKRTVDKHRANLLSKTGCRNTAALVMYAI 216

Query: 230 RFGYI 234
           +   I
Sbjct: 217 KNKMI 221


>gi|294813520|ref|ZP_06772163.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326442073|ref|ZP_08216807.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294326119|gb|EFG07762.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 252

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +   + A + ++        + T               LT RET  L+L   G  +  I
Sbjct: 145 AALRTVSAGDAVVAPRLLTRLIGTFVAPQRTTEEVRLDGLTPRETEVLRLIATGLDNTGI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+LG+ V TV  ++ S   KL   +R QA+  A   G +
Sbjct: 205 AEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 244


>gi|254444034|ref|ZP_05057510.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258342|gb|EDY82650.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 209

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF--LELFKKRSSAARNLTERETSCLQ 183
                Y++  S    +     IEA  A  +VI       L ++RS  A  LT +E   L+
Sbjct: 99  AGARAYLLKDSSRSEII--QAIEAVYAGERVIPPAIKQRLLEQRSRPA--LTAKELEILE 154

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G  ++EIA  LG++  TV  +L +  +KL   +R +A  KA+  G +
Sbjct: 155 LVVQGRRNKEIAADLGITEFTVKGHLKTVFLKLQVSDRTEAAIKAVSEGLV 205


>gi|294664443|ref|ZP_06729796.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605777|gb|EFF49075.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 213

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L L   G ++++I   L +S  TV A++ +   KL   +R  A+  A+R 
Sbjct: 147 DALSARETEVLNLVATGCSNKQIGSALRISEETVKAHMKNILGKLGVRDRTHAVTVALRR 206

Query: 232 GYI 234
           G +
Sbjct: 207 GIL 209


>gi|238020554|ref|ZP_04600980.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147]
 gi|237867534|gb|EEP68540.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147]
          Length = 224

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +++   +   +  S+ ++ LT RE   L     GY+++ IA+ L L+  T+  ++ +  
Sbjct: 132 ARLVQSLIRPAQAESALSQ-LTPRELETLGHLAAGYSNKAIAKNLNLAESTIKVHVQNIL 190

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   +R+QA   AI+ 
Sbjct: 191 RKLKLDSRVQAAVFAIQH 208


>gi|297195058|ref|ZP_06912456.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721552|gb|EDY65460.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 223

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 134 FTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
             +  ++ A + +I          +              A   +T+RE   L L G G +
Sbjct: 116 LAAVRVVAAGDALIAPSVTRRLIEEFAARPKPPATPPHPAIDGVTDREREVLTLIGRGLS 175

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA++L +S  T  A++G    KL A +R+Q +  A   G +
Sbjct: 176 NGEIADRLCISPATAKAHVGRLFTKLAARDRVQLVIIAYELGLV 219


>gi|171909746|ref|ZP_02925216.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 215

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                L ERE   L L   G+  +EIA++LG+S HTVN+++     KL   +R QA+AK
Sbjct: 152 PEMSALAEREREVLDLLSKGFLYKEIADQLGISTHTVNSHIRRIYEKLHVRSRAQAVAK 210


>gi|158318427|ref|YP_001510935.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113832|gb|ABW16029.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 398

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            + ++               +     +  +        LTERE   L   G G+T+ EIA
Sbjct: 282 GDAVIAPALARRLLDAFAQHLGDALPDGERAADPRLDTLTEREREILVAIGHGWTNGEIA 341

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E+L LS  TV  ++G    K+ A +R+QA+  A   G 
Sbjct: 342 ERLVLSESTVKTHVGRMLAKIGARDRVQAVICAYDLGL 379


>gi|84495104|ref|ZP_00994223.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384597|gb|EAQ00477.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 224

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
               ++I +F    +  S  A      LT+RE   + L G+G +++EIA +L +S  T  
Sbjct: 130 RVTRRLIGEFASRSRDTSMPAARELALLTDREREIVGLVGEGLSNDEIATRLVVSPATAK 189

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  A VKL A +R Q +  A   G +
Sbjct: 190 THVSRAMVKLHARDRAQLVVLAYESGLV 217


>gi|269793167|ref|YP_003318071.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100802|gb|ACZ19789.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 211

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTER 177
               +     GYV+ +S       EVI EA     +  +  D        S     L++R
Sbjct: 90  VAASMRAGAKGYVLKSSP-----PEVICEAIRTVSRGRLFLDLEASDLVSSGPTEELSQR 144

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L LA  G  S+EIA +L +S  TV A+L S   KL A N+ +A+   ++ G +
Sbjct: 145 EREVLLLASRGLASKEIASRLVISDRTVQAHLASIYGKLGARNKTEAMLLGLKHGIL 201


>gi|254383084|ref|ZP_04998438.1| two-component system DNA-binding response regulator [Streptomyces
           sp. Mg1]
 gi|194341983|gb|EDX22949.1| two-component system DNA-binding response regulator [Streptomyces
           sp. Mg1]
          Length = 235

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + +       ++    L+ F    +         LT
Sbjct: 117 IRGGARGYVTKTITGTDLVDSVFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 176

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 177 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 235


>gi|15805459|ref|NP_294155.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458112|gb|AAF10009.1|AE001902_9 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            + A E +++A  A   +     +  +  S    +L ERET  L+L   G+++++IA +L
Sbjct: 116 RVAAGEALLDADMAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQGFSNQDIALRL 175

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +S  TV   L     KL   NR QA   AIR G 
Sbjct: 176 DISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|297155349|gb|ADI05061.1| two-component system regulator [Streptomyces bingchenggensis BCW-1]
          Length = 237

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 19/163 (11%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML----ANEVI 146
                 +  +     +       P   +     +  +     +      +L      E +
Sbjct: 59  DTDFPDLGGAETIQRILEADPENPPTALLVTSTVDDNDIYAALHAGARGILLKNIPPEQM 118

Query: 147 IEAHGACYQ--------VITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTS 191
             A  A  +        V++  +++   R++           LT RE   L+L   GY +
Sbjct: 119 TAAVTAAARGNMVFSPGVMSRLVDICTHRTTPVEYDGSRLATLTMREAEVLKLVAKGYGN 178

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +A+ L +S  TV  +L  A  KL+  +R QA+A +  FG +
Sbjct: 179 STVAKILHISEATVKTHLNRAMGKLEISSRAQAVALSYEFGLV 221


>gi|325675648|ref|ZP_08155332.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553619|gb|EGD23297.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 222

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                S   ++T RE   L+    G ++ EIA+K  +S  TV  ++G    K  + +R+Q
Sbjct: 143 DSAAPSLPEDMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQ 202

Query: 224 AIAKAIRFGYI 234
           A+  A + G +
Sbjct: 203 AVVYAFQVGLV 213


>gi|295401748|ref|ZP_06811714.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976235|gb|EFG51847.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 223

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
            L  +GI   V         +        L +E +I  H    Q+    ++     ++  
Sbjct: 91  YLIESGITGFVSKTATSEQLITVIR--CALRDEAVIPVHLL-RQLHLREVKAKMAENAEH 147

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++ E   L    +G  +++IA+K  +S  +V  +L     KL   +R++A+ KA + 
Sbjct: 148 VALSQLEQEILMEVANGLCNKDIAKKHHISQRSVERHLSRIFTKLHVSSRVEAVEKAKQL 207

Query: 232 GYI 234
           G I
Sbjct: 208 GLI 210


>gi|302536340|ref|ZP_07288682.1| two-component system DNA-binding response regulator [Streptomyces
           sp. C]
 gi|302445235|gb|EFL17051.1| two-component system DNA-binding response regulator [Streptomyces
           sp. C]
          Length = 231

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + +       ++    L+ F    +         LT
Sbjct: 113 IRGGARGYVTKTITGTDLVDSVFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 172

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 173 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231


>gi|257057812|ref|YP_003135644.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587684|gb|ACU98817.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 250

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 39/76 (51%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D  +L          L+ RE   LQL  +G  +  +A+KL LSV TV  ++ S   KL A
Sbjct: 159 DATDLTSGPHRLDMPLSRREYQVLQLIAEGLENAAVADKLYLSVETVRTHVKSILRKLGA 218

Query: 219 VNRIQAIAKAIRFGYI 234
            +R  A++KA R G +
Sbjct: 219 RDRTHAVSKAFRSGLL 234


>gi|228924099|ref|ZP_04087375.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835589|gb|EEM80954.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 189

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           +I
Sbjct: 188 WI 189


>gi|89096396|ref|ZP_01169289.1| YocG [Bacillus sp. NRRL B-14911]
 gi|89089250|gb|EAR68358.1| YocG [Bacillus sp. NRRL B-14911]
          Length = 198

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  S    LA  +     G          EL     +    LTERE + L+L 
Sbjct: 93  AGVSGYLLKDSPSEELAGSIRSVMAGRRIYA----PELMDDMYAEENPLTEREKAVLELV 148

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  + EIA +L +   TV  Y+ +   KL+  NRI+AI ++   G+
Sbjct: 149 ADGKNTNEIAAELSIKSGTVRNYVSAILEKLEVQNRIEAITRSREKGW 196


>gi|329938503|ref|ZP_08287928.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302476|gb|EGG46367.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 230

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 37/78 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + D L     +S     LT RE   L     G ++ E+A +L ++  TV  +LG+   KL
Sbjct: 149 VADRLAPANGQSERLNVLTARERDVLSQVARGLSNAEVAAELYVAEATVKTHLGNLMAKL 208

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+A A   G +
Sbjct: 209 HLRDRAQAVAFAYESGLV 226


>gi|323500078|ref|ZP_08105032.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323314934|gb|EGA67991.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 212

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G++S+++A  L +S  TV  +  +   KLD  +  +    A+  G
Sbjct: 150 PLSRREEAVLKLVAQGHSSKKVASMLNISYRTVETHRQNIKHKLDIHSTAELAKYAVEQG 209

Query: 233 YI 234
            +
Sbjct: 210 LV 211


>gi|190889703|ref|YP_001976245.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190694982|gb|ACE89067.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 260

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R  +   LT RE   L L   G  ++ IA+KL LS +TV  ++ +   K++  NR +A +
Sbjct: 182 RRDSISALTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKMNVRNRTEAAS 241

Query: 227 K 227
           +
Sbjct: 242 R 242


>gi|52140211|ref|YP_086620.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51973680|gb|AAU15230.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|329937029|ref|ZP_08286658.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329303636|gb|EGG47521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G++S+EIA+ L +S+ TV  +  +   KL   +R++    AIR G 
Sbjct: 162 LTPREEEVLKLIAEGHSSKEIADTLFISIKTVQRHRANLLHKLGLRDRLELTRYAIRAGL 221

Query: 234 I 234
           +
Sbjct: 222 V 222


>gi|294141034|ref|YP_003557012.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293327503|dbj|BAJ02234.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT RE   L+L  +G  + +IAE L + + TV  +  +   KL+A N  + I  A R 
Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELIHWAQRL 212


>gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 210

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT  E   +Q    G  + EIAE+L +S  TV +++ +   K +  NR +    AI  
Sbjct: 149 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 207


>gi|227820843|ref|YP_002824813.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227339842|gb|ACP24060.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 245

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
            +  +    +G  +   ++   E ++L+ E + +        +  F      R      L
Sbjct: 127 RSYCSVTFNVGRSRFSLMLLFPEDVILSQEGLRDIAVLASY-LASFKAGAGVRHDRDFEL 185

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE  CL    +G TSEEIA  LG+S +T+N Y+ S   K     R +AIA A+R   +
Sbjct: 186 TEREIECLFWIAEGKTSEEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRHNLV 245


>gi|84497630|ref|ZP_00996452.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
 gi|84382518|gb|EAP98400.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
          Length = 210

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLA 185
              GY++  +   +LA+ +   A G           L ++ R+ A   LT RE   LQ  
Sbjct: 97  GARGYLLKDTPPAVLADAIRRAALGETVLAPPVAARLAERLRAPAQVELTPRELDVLQAV 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ E+  +L +   TV  +L     KL+  +R  A+  A + G I
Sbjct: 157 ARGLSNGEVGRELFIGEATVKTHLLRIFAKLEVTDRTAAVTAAYKIGLI 205


>gi|99080801|ref|YP_612955.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99037081|gb|ABF63693.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 12/159 (7%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF-----PVRL--GFHKNGYVIFTSEF 138
           P     +       +      R         G+A      P R        G + F  + 
Sbjct: 56  PFDLVLLDYNMPGMNGLDGLQRALKANGGR-GVAILSGSAPTRTAQDALDAGAIGFIPKT 114

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL----TERETSCLQLAGDGYTSEEI 194
           +   + +      +  ++      + ++ S+    L    + RE   L     G +++EI
Sbjct: 115 MGAQSLLNAVRFMSAGEIYVPVELMREEASAPEHPLLAQLSPREVEVLSGLCRGQSNKEI 174

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A  L L   T+  ++ +   KLDA NR QA   A   G 
Sbjct: 175 ARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGL 213


>gi|67924631|ref|ZP_00518043.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
 gi|67853530|gb|EAM48877.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
          Length = 90

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   L L   G T+ EIA+KL +S  TV+ ++ +   K    NR++ +   +++G
Sbjct: 11  SLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTDNRVELVRWGLQWG 70

Query: 233 YIC 235
            +C
Sbjct: 71  KVC 73


>gi|15610269|ref|NP_217649.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis H37Rv]
 gi|15842706|ref|NP_337743.1| LuxR family DNA-binding response regulator [Mycobacterium
           tuberculosis CDC1551]
 gi|31794309|ref|NP_856802.1| two component transcriptional regulatory protein DevR
           [Mycobacterium bovis AF2122/97]
 gi|121639016|ref|YP_979240.1| two component transcriptional regulatory protein DevR
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662987|ref|YP_001284510.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis H37Ra]
 gi|148824327|ref|YP_001289081.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis F11]
 gi|167970198|ref|ZP_02552475.1| two component system transcriptional regulatory protein devR
           (luxR/uhpA-family) [Mycobacterium tuberculosis H37Ra]
 gi|215405131|ref|ZP_03417312.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 02_1987]
 gi|215413001|ref|ZP_03421702.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215428587|ref|ZP_03426506.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis T92]
 gi|215432092|ref|ZP_03430011.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis EAS054]
 gi|215447421|ref|ZP_03434173.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis T85]
 gi|218754909|ref|ZP_03533705.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis GM 1503]
 gi|219559179|ref|ZP_03538255.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis T17]
 gi|224991508|ref|YP_002646197.1| two component transcriptional regulatory protein [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253800166|ref|YP_003033167.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233755|ref|ZP_04927080.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis C]
 gi|254365759|ref|ZP_04981804.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552223|ref|ZP_05142670.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260188172|ref|ZP_05765646.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CPHL_A]
 gi|260202279|ref|ZP_05769770.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T46]
 gi|260206471|ref|ZP_05773962.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis K85]
 gi|289444697|ref|ZP_06434441.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T46]
 gi|289448812|ref|ZP_06438556.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555407|ref|ZP_06444617.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 605]
 gi|289571343|ref|ZP_06451570.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T17]
 gi|289575844|ref|ZP_06456071.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis K85]
 gi|289746943|ref|ZP_06506321.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 02_1987]
 gi|289751809|ref|ZP_06511187.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T92]
 gi|289755253|ref|ZP_06514631.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis EAS054]
 gi|289759262|ref|ZP_06518640.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis T85]
 gi|289763316|ref|ZP_06522694.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis GM 1503]
 gi|294995500|ref|ZP_06801191.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis 210]
 gi|297635775|ref|ZP_06953555.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732772|ref|ZP_06961890.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN R506]
 gi|298526608|ref|ZP_07014017.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306777449|ref|ZP_07415786.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu001]
 gi|306782174|ref|ZP_07420511.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu002]
 gi|306785994|ref|ZP_07424316.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu003]
 gi|306790359|ref|ZP_07428681.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu004]
 gi|306794886|ref|ZP_07433188.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu005]
 gi|306799085|ref|ZP_07437387.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu006]
 gi|306804929|ref|ZP_07441597.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu008]
 gi|306809118|ref|ZP_07445786.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu007]
 gi|306969219|ref|ZP_07481880.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu009]
 gi|306973567|ref|ZP_07486228.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu010]
 gi|307081276|ref|ZP_07490446.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu011]
 gi|307085878|ref|ZP_07494991.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu012]
 gi|313660105|ref|ZP_07816985.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN V2475]
 gi|81818247|sp|P95193|DEVR_MYCTU RecName: Full=Transcriptional regulatory protein devR (dosR)
 gi|1781234|emb|CAB06281.1| TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY
           LUXR/UHPA-FAMILY) [Mycobacterium tuberculosis H37Rv]
 gi|4335782|gb|AAD17452.1| DevR [Mycobacterium tuberculosis H37Rv]
 gi|13883027|gb|AAK47557.1| DNA-binding response regulator, LuxR family [Mycobacterium
           tuberculosis CDC1551]
 gi|25992275|gb|AAN77131.1| putative response regulator [Mycobacterium bovis]
 gi|31619905|emb|CAD95249.1| TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY
           LUXR/UHPA-FAMILY) [Mycobacterium bovis AF2122/97]
 gi|121494664|emb|CAL73145.1| Two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124599284|gb|EAY58388.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis C]
 gi|134151272|gb|EBA43317.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507139|gb|ABQ74948.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis H37Ra]
 gi|148722854|gb|ABR07479.1| two component system transcriptional regulatory protein devR
           (luxR/uhpA-family) [Mycobacterium tuberculosis F11]
 gi|224774623|dbj|BAH27429.1| two component transcriptional regulatory protein [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253321669|gb|ACT26272.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417616|gb|EFD14856.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T46]
 gi|289421770|gb|EFD18971.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440039|gb|EFD22532.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 605]
 gi|289540275|gb|EFD44853.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis K85]
 gi|289545097|gb|EFD48745.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T17]
 gi|289687471|gb|EFD54959.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 02_1987]
 gi|289692396|gb|EFD59825.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T92]
 gi|289695840|gb|EFD63269.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis EAS054]
 gi|289710822|gb|EFD74838.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis GM 1503]
 gi|289714826|gb|EFD78838.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis T85]
 gi|298496402|gb|EFI31696.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214161|gb|EFO73560.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu001]
 gi|308325136|gb|EFP13987.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu002]
 gi|308329392|gb|EFP18243.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu003]
 gi|308333215|gb|EFP22066.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu004]
 gi|308336672|gb|EFP25523.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu005]
 gi|308340512|gb|EFP29363.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu006]
 gi|308344452|gb|EFP33303.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu007]
 gi|308348448|gb|EFP37299.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu008]
 gi|308353078|gb|EFP41929.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu009]
 gi|308357051|gb|EFP45902.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu010]
 gi|308361006|gb|EFP49857.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu011]
 gi|308364614|gb|EFP53465.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu012]
 gi|323718221|gb|EGB27401.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CDC1551A]
 gi|326902643|gb|EGE49576.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis W-148]
 gi|328459904|gb|AEB05327.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 4207]
          Length = 217

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                      +   L    ++      LT++E + L L  +G T+++IA+++ L+  TV
Sbjct: 122 RSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             Y+     KL    R QA   A   
Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFATEL 207


>gi|308273005|emb|CBX29609.1| hypothetical protein N47_J05900 [uncultured Desulfobacterium sp.]
          Length = 229

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L+L G+GY + EIA+ L +SV TV  +  +   KLD        A +I  
Sbjct: 164 DMLTQREKEVLKLVGEGYKNLEIADYLCISVKTVEKHRANIMEKLDLHTASALTAYSIER 223

Query: 232 GYI 234
           G +
Sbjct: 224 GLV 226


>gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 210

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT  E   +Q    G  + EIAE+L +S  TV +++ +   K +  NR +    AI  
Sbjct: 149 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 207


>gi|262373940|ref|ZP_06067217.1| response regulator [Acinetobacter junii SH205]
 gi|262310951|gb|EEY92038.1| response regulator [Acinetobacter junii SH205]
          Length = 211

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S   +L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 198 KLTHLAIRYGLI 209


>gi|302558086|ref|ZP_07310428.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475704|gb|EFL38797.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 211

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 47/109 (43%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  V   A G           L  +  +    LT RET  L L 
Sbjct: 101 AGATGYLLKDAPPEELAAAVRTAAAGRTTLAPAVADRLMNRLRAPHAALTRRETEVLSLV 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G +++ I+ +L L+  TV ++L     KL   +R  A+A A+  G I
Sbjct: 161 AEGLSNQGISARLQLTRATVKSHLAHVYAKLGVDSRTSAVAAALELGVI 209


>gi|302535350|ref|ZP_07287692.1| two-component system response regulator [Streptomyces sp. C]
 gi|302444245|gb|EFL16061.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQ 183
                       ++A    + A     ++I++F +L   + +A  +    LTERET  L 
Sbjct: 106 DASARQLAEGVRVVAAGEALLAPSVTKRLISEFSKLSDVQRAADPSGVSELTERETEVLV 165

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EIA++L ++  T+  ++    VKL   +R QA   A     +
Sbjct: 166 LIAQGLSNGEIADRLLVAESTIKTHVSRILVKLGLRDRTQAAVYAYETRLV 216


>gi|300775044|ref|ZP_07084907.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
 gi|300506859|gb|EFK37994.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
          Length = 210

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 152 ACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
             + +    L+ F+ +         LTERE   L+L   G   +EIA+K  +S+ TV  +
Sbjct: 126 MSFSIARRVLKHFENKLPEVEGFDELTEREKEILELLSQGLLYKEIADKKFISIDTVKKH 185

Query: 209 LGSATVKLDAVNRIQAIAK 227
           +G+   KL   N+++A+ K
Sbjct: 186 VGNIYRKLHVNNKVEAVNK 204


>gi|86361277|ref|YP_473164.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86285379|gb|ABC94437.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 218

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTE 176
            P+ +   K G V F ++      + I++A         V           +S A +LT 
Sbjct: 97  IPMSVRAMKAGAVDFLTK--PFEEQDILDAVATAMERDAVRRQESAQSAAVTSLAASLTP 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           RE   +     G  +++IA +LG+S  TV  + G+   K++  +    + KA   G
Sbjct: 155 REREVMDAVVRGLMNKQIAFELGISEVTVKLHRGNVMRKMEVRSVADLVRKAEILG 210


>gi|332706485|ref|ZP_08426546.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332354369|gb|EGJ33848.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 230

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LTERE   L L   G ++ EI  +L  S  T+  ++ S   K D  NR + +  A+ 
Sbjct: 166 ALQLTEREQQVLNLLATGLSNVEIGNQLYRSPRTIEKHVSSLFRKTDTSNRAELLRFALE 225

Query: 231 FGYI 234
              I
Sbjct: 226 HHLI 229


>gi|256372733|ref|YP_003110557.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009317|gb|ACU54884.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 222

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L+L   G T+ EIAE L +S  TV  +L     K+ A NR  A+ +A+  G 
Sbjct: 143 LSDRERQVLELVARGRTNVEIAEALAISEATVKTHLAHVFDKVGATNRTSAVLRAMELGL 202

Query: 234 I 234
           I
Sbjct: 203 I 203


>gi|166710760|ref|ZP_02241967.1| putative transcriptional regulator, LuxR family protein
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 235

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      +  A +        H    V ++       N+ +        
Sbjct: 86  AAGDGHEAAWLIPPRPADIGEARVPIHALGTTHGMLCVAWSEGRPAPGNDDVQALQAFAL 145

Query: 155 QVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E  K+  +  R          L++RE   L L   G T+  +A +LG++  TV
Sbjct: 146 LLPAMVAEPAKQIPTRRRKPLQDDRLGALSKREKQVLSLLPRGLTNASLAAELGIAPGTV 205

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++     KL+  +R QA   A++ G 
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|114764692|ref|ZP_01443877.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542892|gb|EAU45913.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L    S     LT RE + L     G +++E+A  L +SV TV  +  +   KL   + 
Sbjct: 135 ALRPVMSGGREQLTNREQTVLLQLAQGKSNKEVALALDISVRTVETHRKNIKRKLGISST 194

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 195 AGLTRYALEHGVL 207


>gi|120406420|ref|YP_956249.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959238|gb|ABM16243.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 212

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSA 170
            L    +   V  G          +  L+ A   I     A   +     +     RS +
Sbjct: 89  FLDEDLVVRAVHAGARGYVVKDVDTTELVRAIRAISAGDSAFDSRSAAAVVRSMSGRSES 148

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+RE   L+L   G ++ +I E+L +S  T   ++ +   KL+   R +A+  A +
Sbjct: 149 RAQLTDREVEVLRLLAAGLSNNKIGERLYISATTAKFHVSNIMRKLEVSRRAEAVYAASK 208

Query: 231 FGYI 234
            G I
Sbjct: 209 RGLI 212


>gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
 gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
          Length = 252

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 1/104 (0%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +   + +       +         ++       K  + A  + T RE S LQL  +G  
Sbjct: 149 LLAEAARYADADIGQMARQITEIRSLLQQTGS-HKSATPATHSFTPREASVLQLVAEGLM 207

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++EIA +L  S+  V  Y+     K    +R + +  A+  G +
Sbjct: 208 NKEIARRLETSIRNVEKYVSRLFTKTGTTSRTELVRYALENGLV 251


>gi|325264809|ref|ZP_08131538.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
 gi|324030101|gb|EGB91387.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
          Length = 198

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
               TERE         G ++ +IA  L LSV TV  +L +    +   +R  A+A A+ 
Sbjct: 126 GHGFTEREAEVTYWLCQGKSNGDIAYILNLSVSTVKKHLSNIFDNMGVRSRSAAVALALE 185

Query: 231 F 231
            
Sbjct: 186 M 186


>gi|325964374|ref|YP_004242280.1| LuxR family transcriptional regulator [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470461|gb|ADX74146.1| two component transcriptional regulator, LuxR family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 217

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-RSSAARNL 174
            L    +GYV+ +     L         G       A   +I D+LE  ++        L
Sbjct: 96  SLRAGASGYVLKSVADRDLIEACRASMRGESFLYPGAVTALIRDYLERDRRGDRMPNSIL 155

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE    +L  +G +++EIA+ L +S+ TV+ +  +   KL   +R+     AIR G I
Sbjct: 156 TPREEQITKLIAEGNSTKEIADALKISIKTVDRHRANVLQKLGLRDRLDLTRFAIRTGLI 215


>gi|291575300|gb|ADE10225.1| LigR1 [Actinoplanes liguriensis]
          Length = 217

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 37/89 (41%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           +  EA               +      + L++RE + L L G G T+ EIA +L +S  T
Sbjct: 123 LAPEASSIMLGAACRGTPAAENAVDEVKQLSDREQAVLGLIGQGLTNAEIAGRLFISDST 182

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V  Y+     KL   NR+QA   A   G 
Sbjct: 183 VKEYVSVILRKLGVANRVQAAVLAYAAGL 211


>gi|298384248|ref|ZP_06993808.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298262527|gb|EFI05391.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 216

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 42/100 (42%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           + E +  A + +          IT+ L     R      LT  ET  L+L   G + +EI
Sbjct: 110 SGEEIRSALKCMALGERFLCYQITELLISNSGRPEHHSVLTATETDILKLIARGKSVKEI 169

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +   SVHT+  +  +   KL   N  +A   A+R G +
Sbjct: 170 AAERISSVHTIVTHKKNIFRKLGVNNVYEATRYALRAGLV 209


>gi|302530526|ref|ZP_07282868.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439421|gb|EFL11237.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 207

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSAARNLTERETSC 181
               GY++  +    L    I  AH         V    +    +       L+ RE   
Sbjct: 96  AGAAGYLLKDASRTEL-AGAIRAAHRGETVLAPSVAGKLVHRM-RNPEPVSPLSAREVEV 153

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G T+ EI  +L +   TV  +L     KL   +R  A+  A+    +
Sbjct: 154 LRLVAKGRTNAEIGRELHIGEATVKTHLLRVFSKLGVSDRTAAVTTALDRHLL 206


>gi|239940280|ref|ZP_04692217.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986761|ref|ZP_04707425.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443713|ref|ZP_06583103.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346660|gb|EFE73564.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ERE   L L  DG ++ EIA  L LS  TV  ++ +  +KLD  +R QA   A+R G
Sbjct: 155 EREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 211


>gi|190574796|ref|YP_001972641.1| putative two-component system response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|190012718|emb|CAQ46347.1| putative two-component system response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 217

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L+    G +++ I E++ +S  TV A++ S   KL   +R  A+ +A+R 
Sbjct: 147 DRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRR 206

Query: 232 GYI 234
           G I
Sbjct: 207 GII 209


>gi|153829582|ref|ZP_01982249.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|148874916|gb|EDL73051.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
          Length = 216

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L++   G +S++IA  L +S  TV  +  +   KLD  +  +    A++ G
Sbjct: 154 PLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHG 213

Query: 233 YI 234
            +
Sbjct: 214 LL 215


>gi|126640329|ref|YP_001083313.1| response regulator [Acinetobacter baumannii ATCC 17978]
 gi|194474666|gb|ACF74452.1| response regulator [Acinetobacter baumannii]
          Length = 192

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S   +L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 119 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 178

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 179 KLTHLAIRYGLI 190


>gi|124002839|ref|ZP_01687691.1| two-component response regulator [Microscilla marina ATCC 23134]
 gi|123992067|gb|EAY31454.1| two-component response regulator [Microscilla marina ATCC 23134]
          Length = 213

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+    G  + EI +KL +S  TV  +  +   K    N ++ +  AI    
Sbjct: 153 LTFREKEVLEQVVAGLGNREIGDKLCISTRTVENHRANILRKFGLKNTVELVKFAIENSL 212

Query: 234 I 234
           +
Sbjct: 213 V 213


>gi|118594726|ref|ZP_01552073.1| regulatory protein, LuxR:Response regulator receiver
           [Methylophilales bacterium HTCC2181]
 gi|118440504|gb|EAV47131.1| regulatory protein, LuxR:Response regulator receiver
           [Methylophilales bacterium HTCC2181]
          Length = 212

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             ++    L++RE         G ++ EIAE + LS  TV  +L +   KL+A N  +  
Sbjct: 142 GENNPVEVLSDREFEVFMALAKGRSTNEIAETICLSPRTVGTHLYNIKQKLNASNSAEIA 201

Query: 226 AKAIRFGYI 234
             AIR G +
Sbjct: 202 LIAIRSGLL 210


>gi|78187407|ref|YP_375450.1| two component LuxR family transcriptional regulator [Chlorobium
           luteolum DSM 273]
 gi|78167309|gb|ABB24407.1| two component transcriptional regulator, LuxR family [Chlorobium
           luteolum DSM 273]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D L      +  A  LT  E   ++L   G T++EIA K  +S HTV  +  +   KL  
Sbjct: 132 DILLKEDGPAEDACLLTTSEIEIVRLISTGLTTKEIAVKKHVSFHTVTTHRKNIFRKLGV 191

Query: 219 VNRIQAIAKAIRFGYI 234
            +  + +  AI+ G I
Sbjct: 192 SSSPELMMFAIKAGLI 207


>gi|256786843|ref|ZP_05525274.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770738|ref|ZP_06530116.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700937|gb|EFD68366.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 248

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L G G ++ E A++L +S  TV  +L     KL   +R QA+  A   G 
Sbjct: 180 LTGREAEVLRLVGRGLSNAEAADRLFISEATVKTHLNRTMSKLGLTSRAQAVVVAYETGL 239

Query: 234 I 234
           +
Sbjct: 240 V 240


>gi|257057857|ref|YP_003135689.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587729|gb|ACU98862.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 218

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 42/96 (43%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 + ++        +     +    RS+ A+ LT RE   ++ A  G T+ EI  +
Sbjct: 118 RAAARGDALVSPQVTVRLLRHFGRKQRPDRSTRAKELTGRELDVVRAAARGLTNSEIGAE 177

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L LS+ TV  +L S   KL   NR++  A A R G 
Sbjct: 178 LYLSLSTVKTHLASVQQKLGVRNRVEIAAWAWRNGI 213


>gi|256380392|ref|YP_003104052.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924695|gb|ACU40206.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 225

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V+        +  +    LT+RE   + LA  G +++ IAE L LS  T   ++ 
Sbjct: 135 ALVRHVLAHPESDPPQAPAPLELLTDREREVVVLAAHGLSNDRIAEHLHLSPLTAKTHVN 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
            A  KL+  +R Q +  A R G +
Sbjct: 195 RAMSKLNTRDRAQLVVLAYRTGLV 218


>gi|254424187|ref|ZP_05037905.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           PCC 7335]
 gi|196191676|gb|EDX86640.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           PCC 7335]
          Length = 232

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 16/235 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNY---DLDSGDI 64
           G+  +SLQ L   +  + +R + R  +  T      F   +  I     +         +
Sbjct: 2   GRAMTSLQLLFEAIQQVNDRAEMR--SHLTPALMEYFEASRAGIFFFDQWKQASPKLRRV 59

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQ----EETVIESSGQLSVRLEGGLLPFAGIAF 120
            ++ +    +    +      P+  + +      + +        V + G L+    I  
Sbjct: 60  LDVALSVDRNPLAGYMTEHHTPVHEEMVTTPKAWKIICPRPDHWHVMV-GPLIQAGQIVG 118

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERET 179
            V  G  +N  +   +   +     I         V+   L L  K S   +  LT RE 
Sbjct: 119 SV--GCTRNKTMPAFNAQDVTDLSAICLHLSERTAVLRYTLPLNSKTSILVSDQLTPREL 176

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI---AKAIRF 231
               L   G T+ EI  +L ++ ++V   L     KL   +R Q +   ++A R 
Sbjct: 177 EIANLVALGRTNAEIGSELWITENSVKQALKRMYRKLKVRSRTQMVTQISRAQRN 231


>gi|160879389|ref|YP_001558357.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428055|gb|ABX41618.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 207

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A  LT++E   L +  +G +++EIA+ + LS  TV  YL +  +KLD  +R QA   
Sbjct: 145 AYQLTKKEYELLTMVAEGLSNKEIADVMFLSEGTVRNYLSNLMLKLDVRDRTQAAIF 201


>gi|70731182|ref|YP_260923.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345481|gb|AAY93087.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 222

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E    ++  A+ LT RE   L L   G+++ EI EKLG
Sbjct: 120 RVARGEEALNSAVSARLLRRMSERGNGQAPQAQALTARERQVLGLVAGGFSNREIGEKLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 180 ITTGTAKAHVERVIGKLGAADRTQAAVRGMALGLV 214


>gi|256838723|ref|ZP_05544233.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739642|gb|EEU52966.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 254

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L      A + LT+RE   L L   G+ S+EIA KL LS++TVN +  +   KL+  N I
Sbjct: 182 LASAVVPADQQLTKREKEILLLIRQGFLSKEIAYKLNLSIYTVNNHRKNILAKLNVDNVI 241

Query: 223 QAIAKAIRFGYI 234
           +AI +A  FG +
Sbjct: 242 EAINRAESFGIL 253


>gi|239926785|ref|ZP_04683738.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435114|ref|ZP_06574504.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338009|gb|EFE64965.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 224

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 130 GYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              +  +  ++ + + ++                  +  K +   + LTERET  L L  
Sbjct: 113 PADLIAAVRVVASGDALLAPSVTRRLIADFARQRPAVRGKPALRLKALTERETEVLTLVA 172

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EIA+ L L+  TV  ++     KLD  +R QA+  A     +
Sbjct: 173 RGQSNGEIAQTLVLAEQTVKTHVSRILTKLDLRDRAQAVVFAYESQLV 220


>gi|291298154|ref|YP_003509432.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567374|gb|ADD40339.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L   G ++++IA  L +S+ T+  ++GS   KL A NR QA+  A   G
Sbjct: 151 ALTAREAEVLRLMATGLSNQDIATHLTVSLETIKTHVGSVLTKLGAANRTQAVIIAYESG 210

Query: 233 YI 234
           ++
Sbjct: 211 FV 212


>gi|254464244|ref|ZP_05077655.1| two component transcriptional regulator, LuxR family
           [Rhodobacterales bacterium Y4I]
 gi|206685152|gb|EDZ45634.1| two component transcriptional regulator, LuxR family
           [Rhodobacterales bacterium Y4I]
          Length = 238

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 33/72 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E        A+ L+ RE   L     G +++EIA +L L   T+  ++ +   KLDA NR
Sbjct: 166 EAAASTHPLAKKLSPRELEVLNGLSKGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNR 225

Query: 222 IQAIAKAIRFGY 233
            QA   A   G 
Sbjct: 226 TQAALCAKEAGL 237


>gi|196233724|ref|ZP_03132564.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222238|gb|EDY16768.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 208

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 37/79 (46%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 + +     L +  +   + LT RE   L L   G   +EIA++LG+S  TV A+
Sbjct: 126 MSMHIARKVVSHFHLARPANPEMQTLTPREHEILTLLARGLHYKEIADQLGISTSTVRAH 185

Query: 209 LGSATVKLDAVNRIQAIAK 227
           L +   KL   +R +A+ K
Sbjct: 186 LHTIYGKLHVQSRTEAVVK 204


>gi|123442872|ref|YP_001006848.1| GerR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122089833|emb|CAL12689.1| GerR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 209

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      ES   L  RL   +  F  I   +             G   + ++   
Sbjct: 48  VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107

Query: 141 LAN--EVIIEAHGACYQVITDFLEL---FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                + +   HG    +  D L       ++      LT RE    QL  +G + + IA
Sbjct: 108 PDELVQALRTVHGGGLYLCADALRALRHMPQQPQQLAILTPREKEVFQLLINGISVKSIA 167

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+L LS  TV+ +  +   KL+    ++ +  A++   +
Sbjct: 168 EQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|170728356|ref|YP_001762382.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169813703|gb|ACA88287.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 896

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           L+ RE     L   G+T+++I+  LG+S +TV  +L +   KL  +NR QA+
Sbjct: 838 LSSREQQICPLLSQGFTNKQISTTLGISENTVKFHLKNLFQKLGVINRQQAV 889


>gi|331699140|ref|YP_004335379.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953829|gb|AEA27526.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +SA   LT+RE   + L   G T+++IAE+L +S  T   ++  A  KL   +R Q + 
Sbjct: 151 AASALTVLTDREREVVALVAGGLTNDDIAERLVVSPATAKTHVSRAMGKLGCRDRAQLVV 210

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 211 LAYESGLV 218


>gi|317124112|ref|YP_004098224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588200|gb|ADU47497.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 244

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 13/163 (7%)

Query: 76  FLFHFN----SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            +            P+ + ++      E    +             +   +  G      
Sbjct: 91  VIRACAGVQTEAGQPVRFLALSVSDAAEDVIAVI-----RAGARGYVTKTISAGDLLTAI 145

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
                   + +  +      A      +  E+ ++       L+ RE   ++L   GY  
Sbjct: 146 GRVADGDAVFSPRLAGFVLDAFGAAAGEVAEIDEE----LDRLSAREREVMRLIARGYQY 201

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +E+A++L +S+ TV  ++ S   KL   +R +  A A+    +
Sbjct: 202 KEVAKELFISIKTVETHVSSVLRKLQLSSRHELTAWAMGRRLL 244


>gi|312112457|ref|YP_003990773.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217558|gb|ADP76162.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 223

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
            L  +GI   V         +  T+    L +E +I  H    Q+    +    + +   
Sbjct: 91  YLIESGITGFVSKTATSEQLI--TAIRCALRDEAVIPVHLL-RQLHLCEVRAKMEENEKQ 147

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+  E   L    +G ++++IA+K  +S  +V  +L     KL   +R++A+ KA + 
Sbjct: 148 AALSRLEQEILFEVANGLSNKDIAKKHYISQRSVERHLSRIFTKLHVSSRVEAVEKAKQL 207

Query: 232 GYI 234
           G I
Sbjct: 208 GLI 210


>gi|171915706|ref|ZP_02931176.1| DNA-binding response regulator [Verrucomicrobium spinosum DSM 4136]
          Length = 220

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 126 FHKNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETS 180
               GY++ T+    +     E +        ++    LE+F K +       L+ RE  
Sbjct: 107 AGAAGYLLKTAGADAIVSAIREALAGGSPMNPRIARRVLEMFSKLAPKTHDYGLSAREKE 166

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L   G   +EIA++L LSVHTV+ YL     KL+   R  A+AKA++   I
Sbjct: 167 ILDLMVKGLIKKEIADRLTLSVHTVDTYLRRIYEKLEVNTRTGAVAKALKERLI 220


>gi|320450528|ref|YP_004202624.1| two component transcriptional regulator, LuxR family [Thermus
           scotoductus SA-01]
 gi|320150697|gb|ADW22075.1| two component transcriptional regulator, LuxR family [Thermus
           scotoductus SA-01]
          Length = 209

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 3/115 (2%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERET 179
            L     GYV   +    L + V+  A         +         +       L+ RE 
Sbjct: 93  FLQAGGQGYVSKAAVDQELLDAVLALARGERYLNPALAMRLAMEIVREEGEEEPLSPREE 152

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G + +E+AE L +S  TV  Y      KL   +R   +  A++ G++
Sbjct: 153 EVLRLLAKGLSHKEVAEHLSISEKTVATYRERGMEKLGLKSRSDLLRYAVKRGWL 207


>gi|297538453|ref|YP_003674222.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257800|gb|ADI29645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Methylotenera sp. 301]
          Length = 258

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RE   +     G T++EIA  L +S +TV ++L     K++   R QA+A 
Sbjct: 198 GLSVRELEIIHWIKSGKTNQEIATILDISQNTVKSHLKRVFQKMNVTRRAQAVAI 252


>gi|294791142|ref|ZP_06756299.1| putative two-component system response regulator [Scardovia
           inopinata F0304]
 gi|294457613|gb|EFG25967.1| putative two-component system response regulator [Scardovia
           inopinata F0304]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +A     ++    +E    R   A   +LT+RE   L L G G T+ E+A++L ++  +
Sbjct: 125 FDASLLSPRITQRLIEKLAPRKPDALVNSLTKREKETLILIGKGMTNAELAQELFITETS 184

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              Y+     KL+  +R Q +  A   G +
Sbjct: 185 ARTYVSRIMAKLNISSRAQLVIFAYENGLV 214


>gi|302547743|ref|ZP_07300085.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465361|gb|EFL28454.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 227

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 39/109 (35%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           L  +  +    L+ERE   LQ  
Sbjct: 118 AGATGYLLKAERPEELFAAIRNAAAGRTALSAPVADRLMAQMRTPRPTLSERERDILQQL 177

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 178 ARGLGNREIARALFISEATVKTHLGRIYGKLGVDTRAGAVAVATGRRLL 226


>gi|83645434|ref|YP_433869.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
 gi|83633477|gb|ABC29444.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
          Length = 894

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 38/63 (60%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L L  +G  +++IA++L L+  TV A++ +   K+ A +R +A+A+A   
Sbjct: 832 EELSKREMEVLTLIYEGLPNKKIADRLFLAPATVKAHIRNIYGKIGAASRTEALARARHL 891

Query: 232 GYI 234
           G +
Sbjct: 892 GLL 894


>gi|71906473|ref|YP_284060.1| LuxR response regulator receiver [Dechloromonas aromatica RCB]
 gi|71846094|gb|AAZ45590.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas
           aromatica RCB]
          Length = 221

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  +      + RE   L     G +++EIA KL L+  TV  ++ +   KL+  +R+Q
Sbjct: 146 AETATIERDRFSPRERDILASLAQGESNKEIARKLDLAESTVKIHVQNIFKKLNMSSRVQ 205

Query: 224 AIAKAIRFGY 233
               A+  GY
Sbjct: 206 VALYAVENGY 215


>gi|326800600|ref|YP_004318419.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551364|gb|ADZ79749.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 209

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  KR++ A  LT RE   L L  + Y+++EIA+KL LS+ TV ++  S   KL+     
Sbjct: 138 ISGKRTTVAVKLTSREQEILALIANEYSNQEIADKLFLSIRTVESHRHSLNQKLNVKTMA 197

Query: 223 QAIAKAIRFGYI 234
             I +A   G I
Sbjct: 198 GLIKEAYLRGLI 209


>gi|324329302|gb|ADY24562.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|315271311|gb|ACO47091.2| putative response regulator, NarL [Deinococcus deserti VCD115]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            + A E +++A  A   +     +  +  S    +L ERET  L+L   G+++++IA +L
Sbjct: 116 RVAAGEALLDADMAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQGFSNQDIALRL 175

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +S  TV   L     KL   NR QA   AIR G 
Sbjct: 176 DISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|312891076|ref|ZP_07750599.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296384|gb|EFQ73530.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ERE   L L  +GYT+ EIA+KL  S  TV  +  +   K    N    I  A++
Sbjct: 150 AIELSEREKEVLDLISEGYTNNEIADKLFTSRRTVEGHRQNLIEKTGVKNTPSLIRFALQ 209

Query: 231 FGYI 234
            G I
Sbjct: 210 NGLI 213


>gi|298245529|ref|ZP_06969335.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553010|gb|EFH86875.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 237

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162
             +V         AG +  +       G V        +     +       +++  + +
Sbjct: 104 AYTVDERVLEGLSAGASGYLLKDSSAEGVVAAIR---AVYAGEQVITSRISRRMMQLYEQ 160

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              ++      LT RE   L     G   +EIA+ + ++  TV  ++ +   KL+  +R 
Sbjct: 161 GLVEKEPIGEGLTSREIEVLLRIARGMVPKEIAQAIAVTEKTVRNHISNIYRKLNIYDRS 220

Query: 223 QAIAKAIRFGYI 234
           Q +  AI+ G I
Sbjct: 221 QIVIYAIKKGLI 232


>gi|270294588|ref|ZP_06200790.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276055|gb|EFA21915.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 261

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE S LQL   G  S+EIA  L +S++T+N +  +  +KL A N I+A+  A R 
Sbjct: 194 EPLTNRELSVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQRL 253

Query: 232 GYI 234
           G +
Sbjct: 254 GLL 256


>gi|218260595|ref|ZP_03475826.1| hypothetical protein PRABACTJOHN_01489 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224454|gb|EEC97104.1| hypothetical protein PRABACTJOHN_01489 [Parabacteroides johnsonii
           DSM 18315]
          Length = 261

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE S LQL   G  S+EIA  L +S++T+N +  +  +KL A N I+A+  A R 
Sbjct: 194 EPLTNRELSVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQRL 253

Query: 232 GYI 234
           G +
Sbjct: 254 GLL 256


>gi|134103671|ref|YP_001109332.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004794|ref|ZP_06562767.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916294|emb|CAM06407.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                       +    +     LTERE   ++    G T+ EI  +L +S+ TV  +L 
Sbjct: 134 RLLKHFSQSRERVRSAVAPPKEELTERELQVVRATAKGLTNTEIGRELFMSLSTVKTHLA 193

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +A  K+ A NR++  A A R G 
Sbjct: 194 AAQAKIGARNRVETAAWAWRSGL 216


>gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 225

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT  E   +Q    G  + EIAE+L +S  TV +++ +   K +  NR +    AI  
Sbjct: 164 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222


>gi|121610317|ref|YP_998124.1| regulatory protein LuxR [Verminephrobacter eiseniae EF01-2]
 gi|121554957|gb|ABM59106.1| regulatory protein, LuxR [Verminephrobacter eiseniae EF01-2]
          Length = 913

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 15/166 (9%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
              L  +    + E          ++RL      F      +  G   +  +   +    
Sbjct: 750 LHLLRAMALDRVSEHDAAFDELTDALRLASHEGFFRTF---LDEGERLSALLQRWATRHR 806

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSA------------ARNLTERETSCLQLAGDG 188
            A   +  A      ++       +    +            A  LT RE   L++   G
Sbjct: 807 AAAASLGIAQQFLSALLERIDAAARNAQPSHAAAPSAKHAADAEALTPRELDVLRMLAMG 866

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +  +AEKL +S  TV ++L   + KLDA +R +A+A     G I
Sbjct: 867 HRNRVLAEKLFVSEFTVKSHLRRISAKLDAQSRTEAVAIGRARGLI 912


>gi|83644489|ref|YP_432924.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632532|gb|ABC28499.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 223

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + R+        +G  ++ IA +L ++  TV  ++ +    L   NR QAI KA + G I
Sbjct: 164 SPRQEQVFHYLLEGMPNKVIAARLDMAEGTVKTHMNTIFRALGVRNRAQAILKARQLGVI 223


>gi|42784527|ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42740459|gb|AAS44382.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|30265375|ref|NP_847752.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778416|ref|YP_022268.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188186|ref|YP_031439.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871303|ref|ZP_02215952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635735|ref|ZP_02394045.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170688151|ref|ZP_02879362.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708082|ref|ZP_02898530.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651949|ref|ZP_02934532.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190569108|ref|ZP_03022007.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818115|ref|YP_002818124.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603443|ref|YP_002869565.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687206|ref|ZP_05151064.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724707|ref|ZP_05186490.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254742263|ref|ZP_05199950.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755822|ref|ZP_05207854.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762162|ref|ZP_05214008.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30260053|gb|AAP29238.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552121|gb|AAT34743.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182113|gb|AAT57489.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712970|gb|EDR18498.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167528844|gb|EDR91601.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127055|gb|EDS95934.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667844|gb|EDT18596.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082653|gb|EDT67717.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190559776|gb|EDV13762.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227003949|gb|ACP13692.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267851|gb|ACQ49488.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|329120079|ref|ZP_08248749.1| nitrate/nitrite response regulator protein NarL [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463610|gb|EGF09928.1| nitrate/nitrite response regulator protein NarL [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 225

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L     G++++ IA  L L+  TV  Y+ +   KL+  +R+QA   A+
Sbjct: 155 RLDELTARELEVLGYLAAGHSNKIIARSLDLAESTVKVYVQNILRKLELTSRVQAAVYAV 214

Query: 230 RF 231
           + 
Sbjct: 215 QH 216


>gi|325916868|ref|ZP_08179116.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536913|gb|EGD08661.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 235

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      +  A +        H    V +        N+ +        
Sbjct: 86  AAGDGHEAAWLMPPRPSDMREAKVPIHALGTTHGMLCVAWNDNRPAPGNDDVQALQAFAL 145

Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E       ++R          L++RE   L L   G T+  +A +LG+S  TV
Sbjct: 146 LLPAMVAEPAKPIATRRRKPMQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++     KL+  +R QA   A++ G 
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQAGL 233


>gi|298241316|ref|ZP_06965123.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554370|gb|EFH88234.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 215

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 6/126 (4%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +   VR            +   + +  +  +       +    L      
Sbjct: 94  AAMRAGARGYLLKGVRHEDMVRAIRAVGNGDAIFSPAIATKLVSYFSTLQPAHL------ 147

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     L++RE   L L   G  + EIAE+L +S  +V  Y+ +   KL   +R QAI +
Sbjct: 148 APVFPELSQREREILALLAQGCKNAEIAERLVVSPKSVRNYVSNVISKLQVADRAQAILR 207

Query: 228 AIRFGY 233
           A   G 
Sbjct: 208 AKDAGL 213


>gi|296168969|ref|ZP_06850636.1| LuxR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896355|gb|EFG76010.1| LuxR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 530

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P R      G      +    A    ++       V+        +R+     LT RE  
Sbjct: 416 PHRDALDDTGA---ARQLRSEAARGRLDGDAV-EAVLEAAGHRPSRRAVRPEGLTRREAE 471

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L     G ++ EIA  L +S  TV  ++     K+   NRI A   A R G 
Sbjct: 472 VLLHVARGQSNREIASALWISEKTVRNHVERIYAKIGVSNRIGASLYATRHGL 524


>gi|238061024|ref|ZP_04605733.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237882835|gb|EEP71663.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 268

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                     +   +A  LTERE   L    +G ++ EI  +L +S  TV  +      K
Sbjct: 189 AAAGQRPAPARGGRSAIGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRK 248

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L A +R  A+A   R G +
Sbjct: 249 LGARDRAHAVAAGFRAGLV 267


>gi|212637151|ref|YP_002313676.1| regulatory protein LuxR [Shewanella piezotolerans WP3]
 gi|212558635|gb|ACJ31089.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3]
          Length = 223

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 13/129 (10%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF------ 160
                LL   G+ F            +  +    +  + +        +V          
Sbjct: 88  EESALLLGVRGLLFS------DQRMDLQLTGLRKILADELWYDRTLISRVFRQLVSQIET 141

Query: 161 -LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            L+L  + S + + LT RE + +QL   G  ++EIAE L +S HTV A++ S   K  A 
Sbjct: 142 PLQLSTEGSESFQQLTRREKTIIQLVSSGARNKEIAEGLCISEHTVKAHISSIFRKTHAR 201

Query: 220 NRIQAIAKA 228
           NR++ +  A
Sbjct: 202 NRVELLRWA 210


>gi|163731572|ref|ZP_02139019.1| transcription regulatory protein degU, putative [Roseobacter
           litoralis Och 149]
 gi|161395026|gb|EDQ19348.1| transcription regulatory protein degU, putative [Roseobacter
           litoralis Och 149]
          Length = 218

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  K       LT RE + L     G ++ ++A  L +SV TV  +  +   KL   + 
Sbjct: 139 SLQPKEGEVREALTGREQTILLQLAQGKSNRDVATALDISVRTVETHRKNIKRKLGISST 198

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 199 AGLTRYAMEHGVL 211


>gi|119715235|ref|YP_922200.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119535896|gb|ABL80513.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 218

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 66/224 (29%), Gaps = 29/224 (12%)

Query: 14  LQELSPRLHLIQNRIKARNFALY------TINSALDFPRRQQLICELHNYDLDSGDIPNI 67
           L +       I+  +++    +          +A   P  +  +  L     D   I   
Sbjct: 15  LDDHELVRRGIRELLESEGDIVVIGESGLAAEAARRIPALRPDVAILDGRLPDGSGIDVC 74

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  +             ++   +  +     S  + G       I   V+    
Sbjct: 75  RDVRSVDPGI------------AALILTSYDDDEALFSAIMAGAAGY---ILKQVKGTDF 119

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
                   +   ML              V+   L    +   +   LT +E   L+L G 
Sbjct: 120 VETVRRVAAGQSMLDP-------AVTAHVLDR-LRAGPRMDPSIEQLTAQEQRILELIGQ 171

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G T+ +IA  L L+  TV  Y+ S   KL   +R QA   A + 
Sbjct: 172 GMTNRQIAAHLCLAEKTVKNYVSSMLAKLGLESRTQAAIFATKH 215


>gi|326382365|ref|ZP_08204057.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199095|gb|EGD56277.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 215

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L     GY++  +    L + +   A G           L ++ S     +TERE   L+
Sbjct: 102 LDAGALGYLLKDAPAEELLSAIRATARGETVLSPAIAATLVRRSSQPGPTITEREVEVLE 161

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G  ++E+A+ + +S  TV A+L     KL    R  A+A AI    I
Sbjct: 162 LLARGMGNKELAKTMFISEGTVKAHLAHVYGKLGVDTRAGAVAAAIERRII 212


>gi|269961706|ref|ZP_06176067.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
 gi|269833571|gb|EEZ87669.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
          Length = 212

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G +S++IA  L +S  TV  +  +   KLD  +  +    A   G
Sbjct: 150 PLSRREEAVLKLVAQGNSSKKIATLLDISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209

Query: 233 YI 234
            I
Sbjct: 210 LI 211


>gi|284041315|ref|YP_003391245.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283820608|gb|ADB42446.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 219

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            + ++     R LT RE   L+L    +T+ EIA +L +S  TV+ +  +   KL A + 
Sbjct: 147 SVDRQPVEEIRQLTPRELEILKLIAQEFTTGEIANQLFISEATVDTHRRNMIQKLRAKSI 206

Query: 222 IQAIAKAIRFGYI 234
           +     AIR G +
Sbjct: 207 VGLANFAIRHGLV 219


>gi|269128686|ref|YP_003302056.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313644|gb|ACZ00019.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L L   G ++ EIA +L +S  TV  ++G    KL   +R+QA+  A   G +
Sbjct: 161 REREVLHLVARGLSNAEIAGRLHVSEATVKTHMGRILTKLGLRDRVQAVVFAYETGLV 218


>gi|254453006|ref|ZP_05066443.1| autoinducer-binding transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
 gi|198267412|gb|EDY91682.1| autoinducer-binding transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
          Length = 223

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 7/201 (3%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            F  Y    +L  P+       L N+     +        Y    +    +      W+ 
Sbjct: 12  GFTHYRSGRSLGDPQDW---VLLTNHGDSYMEEFLGKGHLYNAPMIRWALANTGACSWRW 68

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEVIIE 148
           + E   +  + ++ V    G    AG       +         +   +       E I  
Sbjct: 69  MAEPGNLSEAKKIVVGFNLGQNVTAGYTVSFLSITERTKGATALTAKAGMSQDEVEEIWA 128

Query: 149 AHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            HG    VI + + L  +    ++  +T+R+   LQ  GDG T+++IA  L L+  T+  
Sbjct: 129 KHGDEITVINNVMHLKIQTLPYSQRHMTKRQREVLQWVGDGKTTQDIAILLELTPATIEK 188

Query: 208 YLGSATVKLDAVNRIQAIAKA 228
           +L  A   LD     QA+ KA
Sbjct: 189 HLRLAREALDVETTAQAVLKA 209


>gi|185177925|pdb|3C3W|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr
 gi|185177926|pdb|3C3W|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr
          Length = 225

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                      +   L    ++      LT++E + L L  +G T+++IA+++ L+  TV
Sbjct: 122 RSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             Y+     KL    R QA   A   
Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFATEL 207


>gi|270308742|ref|YP_003330800.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154634|gb|ACZ62472.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 238

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE + L L   GY++++I +KL  +  TV  Y+ +   KL   NR Q    A   G 
Sbjct: 178 LTDRERTILNLLAKGYSNKDIGQKLDYTQTTVKKYVYNCMKKLGVSNRTQLAILANNNGL 237


>gi|113969001|ref|YP_732794.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|114048854|ref|YP_739404.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|117919108|ref|YP_868300.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|113883685|gb|ABI37737.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
 gi|113890296|gb|ABI44347.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
 gi|117611440|gb|ABK46894.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 209

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE---AHGACYQVI 157
              +    +    +   V         ++              +++++        ++VI
Sbjct: 69  LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLDKLKNAMLGHRVI 128

Query: 158 TDFLE--LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +D +E  L++ +++A       +LT RE   LQ   +G ++  I+E L +S  TV  ++ 
Sbjct: 129 SDEVEEYLYELKNAADEQEWISSLTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|15607984|ref|NP_215359.1| nitrate/nitrite response transcriptional regulatory protein NarL
           [Mycobacterium tuberculosis H37Rv]
 gi|15840258|ref|NP_335295.1| LuxR family DNA-binding response regulator [Mycobacterium
           tuberculosis CDC1551]
 gi|121636767|ref|YP_976990.1| putative nitrate/nitrite response transcriptional regulatory
           protein narL [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148660621|ref|YP_001282144.1| putative nitrate/nitrite response transcriptional regulatory
           protein NarL [Mycobacterium tuberculosis H37Ra]
 gi|148822052|ref|YP_001286806.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis F11]
 gi|167967564|ref|ZP_02549841.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis H37Ra]
 gi|215426107|ref|ZP_03424026.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T92]
 gi|215429700|ref|ZP_03427619.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis EAS054]
 gi|218752509|ref|ZP_03531305.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis GM 1503]
 gi|219556707|ref|ZP_03535783.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T17]
 gi|224989238|ref|YP_002643925.1| putative nitrate/nitrite response transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800134|ref|YP_003033135.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 1435]
 gi|254231154|ref|ZP_04924481.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis C]
 gi|254363780|ref|ZP_04979826.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549820|ref|ZP_05140267.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260185739|ref|ZP_05763213.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CPHL_A]
 gi|260199864|ref|ZP_05767355.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T46]
 gi|289442253|ref|ZP_06431997.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T46]
 gi|289446409|ref|ZP_06436153.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CPHL_A]
 gi|289555375|ref|ZP_06444585.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 605]
 gi|289568806|ref|ZP_06449033.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T17]
 gi|289749363|ref|ZP_06508741.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T92]
 gi|289752898|ref|ZP_06512276.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis EAS054]
 gi|289760976|ref|ZP_06520354.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis GM 1503]
 gi|297633361|ref|ZP_06951141.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 4207]
 gi|297730346|ref|ZP_06959464.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN R506]
 gi|306774968|ref|ZP_07413305.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu001]
 gi|306782118|ref|ZP_07420455.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu002]
 gi|306783512|ref|ZP_07421834.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu003]
 gi|306787876|ref|ZP_07426198.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu004]
 gi|306792217|ref|ZP_07430519.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu005]
 gi|306796615|ref|ZP_07434917.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu006]
 gi|306802502|ref|ZP_07439170.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu008]
 gi|306806684|ref|ZP_07443352.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu007]
 gi|306966881|ref|ZP_07479542.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu009]
 gi|306971075|ref|ZP_07483736.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu010]
 gi|307078803|ref|ZP_07487973.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu011]
 gi|307083362|ref|ZP_07492475.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu012]
 gi|313657672|ref|ZP_07814552.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN V2475]
 gi|81816327|sp|O53856|NARL_MYCTU RecName: Full=Probable transcriptional regulatory protein NarL
 gi|2916903|emb|CAA17650.1| POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY
           PROTEIN NARL [Mycobacterium tuberculosis H37Rv]
 gi|13880417|gb|AAK45109.1| DNA-binding response regulator, LuxR family [Mycobacterium
           tuberculosis CDC1551]
 gi|121492414|emb|CAL70882.1| Possible nitrate/nitrite response transcriptional regulatory
           protein narL [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600213|gb|EAY59223.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis C]
 gi|134149294|gb|EBA41339.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504773|gb|ABQ72582.1| putative nitrate/nitrite response transcriptional regulatory
           protein NarL [Mycobacterium tuberculosis H37Ra]
 gi|148720579|gb|ABR05204.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis F11]
 gi|224772351|dbj|BAH25157.1| putative nitrate/nitrite response transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321637|gb|ACT26240.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 1435]
 gi|289415172|gb|EFD12412.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T46]
 gi|289419367|gb|EFD16568.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CPHL_A]
 gi|289440007|gb|EFD22500.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 605]
 gi|289542560|gb|EFD46208.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T17]
 gi|289689950|gb|EFD57379.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T92]
 gi|289693485|gb|EFD60914.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis EAS054]
 gi|289708482|gb|EFD72498.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis GM 1503]
 gi|308216464|gb|EFO75863.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu001]
 gi|308325197|gb|EFP14048.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu002]
 gi|308331675|gb|EFP20526.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu003]
 gi|308335475|gb|EFP24326.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu004]
 gi|308339273|gb|EFP28124.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu005]
 gi|308342950|gb|EFP31801.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu006]
 gi|308346834|gb|EFP35685.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu007]
 gi|308350751|gb|EFP39602.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu008]
 gi|308355412|gb|EFP44263.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu009]
 gi|308359364|gb|EFP48215.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu010]
 gi|308363271|gb|EFP52122.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu011]
 gi|308366939|gb|EFP55790.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu012]
 gi|323720707|gb|EGB29783.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CDC1551A]
 gi|328459872|gb|AEB05295.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 4207]
          Length = 216

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    LP   +                    G+++  S  
Sbjct: 56  DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR 115

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++ +  A  L+ RE   L     G +   I
Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL   +R  A+A+A+R   +
Sbjct: 176 AAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215


>gi|325964072|ref|YP_004241978.1| LuxR family transcriptional regulator [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470159|gb|ADX73844.1| transcriptional regulator, LuxR family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 545

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 66/226 (29%), Gaps = 15/226 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++++ L +++ R HL+   +     A+    +A                 L        
Sbjct: 333 IRRAAGLADVATRRHLLPALVDIE-LAVPDPGAARQGAEELIRFARECPLPLVRAAAYQA 391

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 ++      S  L   W+   E  V   + +  V L                   
Sbjct: 392 DGAVRLEERDPAGASRALRQAWRLWLELGVPYEAARCRVLLGRA--------------CR 437

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
             G           A+   +E   A     T  L            LT RE   L+L   
Sbjct: 438 DLGDEASARMEFEAAHTEFLELGAAPAAAWTASLMRKGDDGGEPGPLTAREAEVLRLVAS 497

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G  +  IA +L LS  TV  ++ +  +KL   +R  A   A   G 
Sbjct: 498 GQGNRAIAAQLFLSEKTVARHISNIFLKLGLSSRAAATRYAFEHGL 543


>gi|291618350|ref|YP_003521092.1| NarP [Pantoea ananatis LMG 20103]
 gi|291153380|gb|ADD77964.1| NarP [Pantoea ananatis LMG 20103]
 gi|327394743|dbj|BAK12165.1| nitrate/nitrite response regulator protein NarP [Pantoea ananatis
           AJ13355]
          Length = 210

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 11/135 (8%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-------V 156
           L    +    +   V         ++              E+++       Q        
Sbjct: 73  LRHEGISSRILVLTVSDARSDIYALVDAGADGYLLKDSEPEILLRQIMQALQGETVFSDA 132

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L +        R LTERE   +Q    G +++++A  L +S  TV  ++ +   KL
Sbjct: 133 VRHALSMRHNSDDPFRLLTERERGVMQEVARGLSNKDVAHALHISEETVKVHIRNVLRKL 192

Query: 217 DAVNRIQAIAKAIRF 231
           D  +R+ A    I  
Sbjct: 193 DVRSRVAATIMWIER 207


>gi|288803368|ref|ZP_06408801.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
 gi|288334188|gb|EFC72630.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
          Length = 198

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G  ++EIAEKL +S+ TV  +  +   KL   +       A+  GY
Sbjct: 133 LSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 192

Query: 234 I 234
           I
Sbjct: 193 I 193


>gi|302345392|ref|YP_003813745.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
 gi|302150188|gb|ADK96450.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
          Length = 204

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G  ++EIAEKL +S+ TV  +  +   KL   +       A+  GY
Sbjct: 139 LSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 198

Query: 234 I 234
           I
Sbjct: 199 I 199


>gi|222106283|ref|YP_002547074.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737462|gb|ACM38358.1| two component response regulator [Agrobacterium vitis S4]
          Length = 220

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            I+ A      V+   +      S A+  L++R+   L L  +G T++EIA  LG+S  T
Sbjct: 117 EILRAVREGDVVVQVPVSTNAIASYASPALSQRQLDVLHLLAEGRTNKEIAIILGISPFT 176

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++ +    L    R  A+ K I  G +
Sbjct: 177 VRIHVSAIFRALGVATRAGAVTKGIAMGLV 206


>gi|146319339|ref|YP_001199051.1| response regulator [Streptococcus suis 05ZYH33]
 gi|146321541|ref|YP_001201252.1| response regulator [Streptococcus suis 98HAH33]
 gi|253752368|ref|YP_003025509.1| response regulator protein [Streptococcus suis SC84]
 gi|253754194|ref|YP_003027335.1| response regulator protein [Streptococcus suis P1/7]
 gi|253756128|ref|YP_003029268.1| response regulator protein [Streptococcus suis BM407]
 gi|145690145|gb|ABP90651.1| Response regulator [Streptococcus suis 05ZYH33]
 gi|145692347|gb|ABP92852.1| Response regulator [Streptococcus suis 98HAH33]
 gi|251816657|emb|CAZ52298.1| response regulator protein [Streptococcus suis SC84]
 gi|251818592|emb|CAZ56426.1| response regulator protein [Streptococcus suis BM407]
 gi|251820440|emb|CAR47123.1| response regulator protein [Streptococcus suis P1/7]
 gi|319758772|gb|ADV70714.1| response regulator [Streptococcus suis JS14]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     +    LT  E+  L+L  +G +++EIA +L LS  TV  Y+ S   KL A NR
Sbjct: 127 ELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENR 186

Query: 222 IQAIAKAIRFGYI 234
             A+  A   G++
Sbjct: 187 TAAVKVAQEKGWL 199


>gi|89070144|ref|ZP_01157473.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044261|gb|EAR50407.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 211

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  + +     LT RE + L     G +++E+A  L +SV TV  +  +   KL   + 
Sbjct: 134 SLRPRTTDGREPLTTREQTILLRLAQGRSNKEVALLLDISVRTVETHRKNIKRKLGISST 193

Query: 222 IQAIAKAIRFGYI 234
                 A+  G +
Sbjct: 194 AGLTRYALEHGVL 206


>gi|163847172|ref|YP_001635216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525011|ref|YP_002569482.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668461|gb|ABY34827.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448890|gb|ACM53156.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 219

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 31/76 (40%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D L       +    LT RE   L L   G  +  IA KL L+  TV   L     KL  
Sbjct: 138 DLLRRNDTSPALNEVLTPRERDILALLAQGDDNRAIALKLSLAEKTVGNRLSEIFQKLGV 197

Query: 219 VNRIQAIAKAIRFGYI 234
            NR QA   A++ G +
Sbjct: 198 SNRTQAAIVAVQRGLV 213


>gi|299138245|ref|ZP_07031424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599491|gb|EFI55650.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 162

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   G+++ EIA +L +S +TV  +   A  KL A  R QA+ +    G +
Sbjct: 102 TARELETLTLIARGFSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAVQRGKELGLL 161


>gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 216

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           ++      E  K +  +   LT  E   +QL   G ++ EIA KL +S  T+ +++ +  
Sbjct: 136 HKAGISLDEAHKIQVPSNVELTPTELKVIQLVAQGLSNREIASKLNVSQRTIESHVSNML 195

Query: 214 VKLDAVNRIQAIAKAIR 230
            K    NR +    A+ 
Sbjct: 196 NKTSLHNRTELARWAME 212


>gi|332143243|ref|YP_004428981.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553265|gb|AEA99983.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 217

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 16/136 (11%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-----------AHGA 152
           L    +    I   V          + +         +  E I++               
Sbjct: 74  LRDKGVDSRIIMLTVSDNDEDVVEAVRSGADGYLLKDMDPEDIVDKLREAALGKMVMSAK 133

Query: 153 CYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             +V+   L   ++  S A  +LT RE   L+L   G +++ IA +L +S  TV  ++  
Sbjct: 134 LTEVLATALRKPERAGSRALASLTSRELEILKLIAKGMSNKLIARELDISDGTVKVHVKH 193

Query: 212 ATVKLDAVNRIQAIAK 227
              KL+  +R++A   
Sbjct: 194 FLKKLNLRSRVEAAVW 209


>gi|330882972|gb|EGH17121.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 111

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     ++   +LT RE   L L   G+++ EI EKLG
Sbjct: 9   RVARGEEALNSTVSARLLRRMTERNTSGAALPESLTPRERQVLGLVAGGFSNREIGEKLG 68

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 69  ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 103


>gi|325288921|ref|YP_004265102.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964322|gb|ADY55101.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 36/54 (66%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT RE  CL+L  +G  ++EIAE+LG++  TV  ++G+   KL   +R++A+ K
Sbjct: 169 LTSREKDCLKLICEGLRNKEIAEELGITNRTVEYHVGNILEKLGVKSRLEALLK 222


>gi|312137639|ref|YP_004004975.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311886978|emb|CBH46287.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 206

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L     GY++  S    +   +     G           +  +     + LT RE   L 
Sbjct: 95  LDAGAIGYLLKDSAPPDIFGAIRDAVAGRSVLSPPVASRVLDRMRRPDQALTAREAELLS 154

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L  +G T++E+ ++L +S  TV  +L     KL   +R  A++ A+R 
Sbjct: 155 LLAEGLTNKELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202


>gi|88856025|ref|ZP_01130687.1| putative LuxR-family transcriptional regulator [marine
           actinobacterium PHSC20C1]
 gi|88814892|gb|EAR24752.1| putative LuxR-family transcriptional regulator [marine
           actinobacterium PHSC20C1]
          Length = 532

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R   +  L++RE +  +    G +S +IAE L +SV+TV ++L +   KL   +R +AI 
Sbjct: 459 RPQDSFALSDRERAIARELVRGSSSAQIAESLYISVNTVKSHLKNIYRKLGVTSRAEAIH 518

Query: 227 KAIRFGY 233
           K+   G 
Sbjct: 519 KSRELGL 525


>gi|330810002|ref|YP_004354464.1| two-component response regulator NarL [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378110|gb|AEA69460.1| Putative two-component response regulator NarL [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 215

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+   L    +++     LTERE   L+    GY+++ I  KLG++  TV  ++ +   
Sbjct: 136 RVMAQALRSPPRQADV--ELTERERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLH 193

Query: 215 KLDAVNRIQAIAKAIRF 231
           KL   +R++A   A+  
Sbjct: 194 KLGLRSRVEAAVWAMEH 210


>gi|325272909|ref|ZP_08139236.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51]
 gi|324101953|gb|EGB99472.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51]
          Length = 665

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++     L      ++  L+ RE + L+L   G ++++I+E+L +S+HTV  +      K
Sbjct: 586 LLGHLPALPSAPCGSSEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSK 645

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L    R QA+AKA   G +
Sbjct: 646 LGVERRTQAVAKAKSLGLL 664


>gi|118471623|ref|YP_884743.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172910|gb|ABK73806.1| transcriptional regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 395

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R      LTERE+  L+L   G ++ EIAE+L ++  TV +++     K  AVNR QAIA
Sbjct: 330 RPPHRVELTERESEVLRLMVTGASNHEIAEQLVITEGTVKSHVKHILRKYGAVNRAQAIA 389

Query: 227 KAIR 230
            A++
Sbjct: 390 WALQ 393


>gi|77361820|ref|YP_341395.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76876731|emb|CAI87953.1| putative transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 218

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 142 ANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
             +++  A     Q   D L  L +        LT+RE + + L  +G  ++EIAE+L +
Sbjct: 123 RRDIMCNALNRMLQFNKDALHKLTEGDIEPV-KLTKREKAIISLMSNGSKNKEIAEELSI 181

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           S HTV  +L SA  K    NRI+ ++ A + 
Sbjct: 182 SPHTVKTHLYSAFRKTKCRNRIELLSWAQQH 212


>gi|317475113|ref|ZP_07934381.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908757|gb|EFV30443.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 261

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   LQL   G  S+EIA  L +S++T+N +  +  +KL A N I+A+  A R 
Sbjct: 194 EPLTNRELCVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQRL 253

Query: 232 GYI 234
           G +
Sbjct: 254 GLL 256


>gi|300715237|ref|YP_003740040.1| two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
 gi|299061073|emb|CAX58180.1| Two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
          Length = 206

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLT 175
             PV +   K G   F ++   +  E +++A     ++  D +   +++   ++   +LT
Sbjct: 85  TIPVTVRAMKAGAFEFLTK--PVDPERLLQAVEEALRISEDGMASSQQKLELTARHHSLT 142

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE   + LA  G  +++IA ++G+S  T   +      K+   +    +  A R   
Sbjct: 143 PREGEVMLLAIGGLQNKQIAAEMGISEITAKVHKRRVMEKMQVRSLSDLVRAAERLNI 200


>gi|297196109|ref|ZP_06913507.1| two-component system regulatory protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719414|gb|EDY63322.1| two-component system regulatory protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 222

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   + L   G ++E+IA+++ +S  T   ++  A  KL A +R Q +  A   
Sbjct: 155 EELTNREREAVALVAQGLSNEQIADRMVISPLTAKTHVNRAMAKLHARDRAQLVILAYES 214

Query: 232 GYI 234
           G +
Sbjct: 215 GLV 217


>gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 306

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           NLT+RE+  L+   +G T+ EIAE L +S  TVN +L     KL   NR  A   A+R
Sbjct: 244 NLTDRESEVLRWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTAAAGVALR 301


>gi|312884751|ref|ZP_07744452.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367664|gb|EFP95215.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 211

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
                G++  +S+   L N +  ++E +    + + DF     + +    +LT ++   L
Sbjct: 98  RHGAFGFIPKSSDMRALVNALNQVLEGNMFFPETVADFGSEKNRLAEKIASLTPQQHKVL 157

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +  DG  +++IA +L +S  T+ A++ +   KLD  NR QA+    + 
Sbjct: 158 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVILIQQL 206


>gi|320007212|gb|ADW02062.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 223

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177
              +G+V+ +     L                GA   +I ++L  +        R +TER
Sbjct: 105 AGASGFVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNYLDRVRDGGDVPDRAITER 164

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  +G++S+EIA  L +SV TV  +  +   KL   +R++    AIR G I
Sbjct: 165 EEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 221


>gi|302547311|ref|ZP_07299653.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464929|gb|EFL28022.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 220

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               + +     LTERE   L+L   G ++ EIA +L +   TV +++ S   KL A +R
Sbjct: 144 SAEGRAALERAALTEREGDVLRLVARGLSNAEIAARLVVGTETVKSHVSSVLAKLGARDR 203

Query: 222 IQAIAKAIRFGYI 234
            QA+  A   G++
Sbjct: 204 TQAVIAAYESGFV 216


>gi|271965453|ref|YP_003339649.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508628|gb|ACZ86906.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEK 197
              A    + A     +V+   L   ++ +      LT+RE   L L G G ++ EIA+ 
Sbjct: 116 RRAAAGEPLLAPSVLRRVVERALAAEEQAAVQVPAGLTDRELEVLALVGVGLSNAEIADA 175

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L + V TV  ++ +A  KL   NR QA   A R G +
Sbjct: 176 LHVGVTTVKTHVSTAMDKLGLRNRTQAAVVAHRIGLV 212


>gi|218671400|ref|ZP_03521070.1| two-component response regulator protein [Rhizobium etli GR56]
          Length = 223

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166
           +         I+  V  G         ++E ++ A E + +        V    +   ++
Sbjct: 85  MLSMHDSREYISSSVMRGAAGYVLKDVSTEEIVAAIETVADGGTYFSSGVFDALM--GER 142

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               +  LT RE   L L   G ++ EIAE LG+S  T   +  +   KL        I 
Sbjct: 143 VEEGSDPLTPRERDTLGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLIR 202

Query: 227 KAIRFGY 233
            A+  G 
Sbjct: 203 YALDHGI 209


>gi|198277378|ref|ZP_03209909.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135]
 gi|198269876|gb|EDY94146.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135]
          Length = 215

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   LQ    G+ + EIAE L +S +T+  +  S   KL+A N +  + KAI  
Sbjct: 148 EQLTLREMEVLQAIAKGFNTREIAELLHVSNNTIETHRKSLMSKLEARNAVDLVLKAINL 207

Query: 232 GYI 234
           G I
Sbjct: 208 GII 210


>gi|218900478|ref|YP_002448889.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543280|gb|ACK95674.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 200

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NR
Sbjct: 128 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 187

Query: 222 IQAIAKAIRFGYI 234
           I+AI  A   G+I
Sbjct: 188 IEAITIAEEKGWI 200


>gi|88861227|ref|ZP_01135860.1| putative transcriptional regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
 gi|88816820|gb|EAR26642.1| putative transcriptional regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
          Length = 218

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAARNLTERE 178
              N  V+     L+L N+ +          ++  L   K          +   +LT+RE
Sbjct: 101 ATDNADVVMKGIRLLLDNQ-LWYRRNIMCNALSRLLHFNKDNILQLTDTLAEPISLTKRE 159

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            + + L   G  ++EIA++L +S HTV  +L SA  K    NRI+ ++ A + 
Sbjct: 160 KAIIVLMSKGCKNKEIADELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|110637722|ref|YP_677929.1| response regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110280403|gb|ABG58589.1| response regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 220

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L++  DG  + EIA+ LG+S+ T+  +  +   KL   N ++ +  AI   
Sbjct: 159 ELTKREKGILKMITDGKNNREIADGLGISIRTIETHRANIMKKLKVKNAVELVRIAIDEK 218

Query: 233 YI 234
            +
Sbjct: 219 IV 220


>gi|323165527|gb|EFZ51314.1| putative csgAB operon transcriptional regulatory protein [Shigella
           sonnei 53G]
          Length = 142

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 82  LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 136


>gi|303256662|ref|ZP_07342676.1| nitrate/nitrite response regulator protein NarL [Burkholderiales
           bacterium 1_1_47]
 gi|330999299|ref|ZP_08323016.1| nitrate/nitrite response regulator protein NarL [Parasutterella
           excrementihominis YIT 11859]
 gi|302860153|gb|EFL83230.1| nitrate/nitrite response regulator protein NarL [Burkholderiales
           bacterium 1_1_47]
 gi|329575157|gb|EGG56708.1| nitrate/nitrite response regulator protein NarL [Parasutterella
           excrementihominis YIT 11859]
          Length = 214

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +     E    +      LTERE S L+L   G T++EI + L +S  TV  ++  
Sbjct: 132 MNQALAECLREESFSKERRVSELTEREKSVLKLIAQGKTNKEIGKALEISDGTVKVHVKH 191

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL   +R++A   A   
Sbjct: 192 VLHKLSFRSRVEAAVWAKEQ 211


>gi|229489109|ref|ZP_04382975.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
 gi|229324613|gb|EEN90368.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
          Length = 209

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  S    +   V     G           L ++       LT RE+  L L
Sbjct: 99  DAGAIGYLLKDSTPDEIFGAVRGAVAGRSVLSPAVASRLVQQMQRPQEALTARESELLSL 158

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +G T+ E+ + L +S  TV  +LG    KL    R  A++ A+R 
Sbjct: 159 LAEGMTNRELGKALFISEATVKTHLGHIYAKLGVDTRSAAVSVALRR 205


>gi|258650899|ref|YP_003200055.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554124|gb|ACV77066.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 241

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +       +LT RE   L L   G ++ EIA  L +S  TV +++G+   KLD  NR+ 
Sbjct: 154 DRAVVGPGGSLTGREHEVLLLLARGRSNAEIATDLVVSEVTVKSHVGAVLHKLDLRNRVA 213

Query: 224 AIAKAIRFGYI 234
           A+  A   G I
Sbjct: 214 AVIYAYEHGLI 224


>gi|166031115|ref|ZP_02233944.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC
           27755]
 gi|166028962|gb|EDR47719.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC
           27755]
          Length = 207

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              Q+I+   EL +++S+   A   +TE+E + ++L  DG +++EIA ++ LS  T+  Y
Sbjct: 123 FGTQIISRLPELLERKSAFDYATYEITEKERAVMKLVADGKSNKEIAGEMFLSEGTIRNY 182

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           +     KL+  +R Q     +R 
Sbjct: 183 ISGILDKLNLRDRTQLAVFYLRN 205


>gi|42780178|ref|NP_977425.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42736096|gb|AAS40033.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 214

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLTE+E   L+    G  +++IA  +G++  TV AYL +   KL   +R +A+A +I   
Sbjct: 151 NLTEKELFVLKAIARGNKNKDIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIEKK 210

Query: 233 YI 234
            I
Sbjct: 211 LI 212


>gi|332671209|ref|YP_004454217.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340247|gb|AEE46830.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 207

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   A G      +    L ++       LT RE   L   
Sbjct: 96  AGATGYLLKDTPRDQLVAGVRAAARGESALSPSVARRLVQQVRGEQERLTAREQEVLAGV 155

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++  I  +L ++  TV  +L  A  KL   +R +A+  AI  G +
Sbjct: 156 ARGLSNAGIGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 204


>gi|329733822|gb|EGG70146.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU028]
          Length = 218

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY +++IAEKL +SV TV A+      KL+  ++ + +  
Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 210 ALKKKLL 216


>gi|329726465|gb|EGG62928.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU144]
          Length = 218

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY +++IAEKL +SV TV A+      KL+  ++ + +  
Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 210 ALKKKLL 216


>gi|319401681|gb|EFV89890.1| transcriptional regulatory protein degU [Staphylococcus epidermidis
           FRI909]
          Length = 218

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY +++IAEKL +SV TV A+      KL+  ++ + +  
Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 210 ALKKKLL 216


>gi|296505776|ref|YP_003667476.1| two-component response regulator YocG [Bacillus thuringiensis
           BMB171]
 gi|296326828|gb|ADH09756.1| two-component response regulator YocG [Bacillus thuringiensis
           BMB171]
          Length = 200

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|242243808|ref|ZP_04798252.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|242232744|gb|EES35056.1| transcriptional regulator [Staphylococcus epidermidis W23144]
          Length = 218

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY +++IAEKL +SV TV A+      KL+  ++ + +  
Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 210 ALKKKLL 216


>gi|57865448|ref|YP_189537.1| DegU family transcriptional regulator [Staphylococcus epidermidis
           RP62A]
 gi|251811904|ref|ZP_04826377.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875194|ref|ZP_06284067.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367099|ref|ZP_06613771.1| LuxR family DNA-binding response regulator [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81673409|sp|Q5HLK6|NREC_STAEQ RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|57636106|gb|AAW52894.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           epidermidis RP62A]
 gi|251804583|gb|EES57240.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295959|gb|EFA88480.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318829|gb|EFE59203.1| LuxR family DNA-binding response regulator [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329734541|gb|EGG70852.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU045]
          Length = 218

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY +++IAEKL +SV TV A+      KL+  ++ + +  
Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 210 ALKKKLL 216


>gi|27468887|ref|NP_765524.1| response regulators of two-component regulatory [Staphylococcus
           epidermidis ATCC 12228]
 gi|81842572|sp|Q8CN75|NREC_STAES RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|27316435|gb|AAO05610.1|AE016750_215 response regulators of two-component regulatory [Staphylococcus
           epidermidis ATCC 12228]
          Length = 218

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY +++IAEKL +SV TV A+      KL+  ++ + +  
Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 210 ALKKKLL 216


>gi|31792032|ref|NP_854525.1| nitrate/nitrite response transcriptional regulatory protein NarL
           [Mycobacterium bovis AF2122/97]
 gi|31617619|emb|CAD93729.1| POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY
           PROTEIN NARL [Mycobacterium bovis AF2122/97]
          Length = 216

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E+ ++ +  A  L+ RE   L     G +   IA +L ++  TV  ++     KL   +R
Sbjct: 143 EIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDR 202

Query: 222 IQAIAKAIRFGYI 234
             A+A+A+R   +
Sbjct: 203 AAAVAEAMRQRLL 215


>gi|86139948|ref|ZP_01058513.1| Two Component Transcriptional Regulator, LuxR family protein
           [Roseobacter sp. MED193]
 gi|85823366|gb|EAQ43576.1| Two Component Transcriptional Regulator, LuxR family protein
           [Roseobacter sp. MED193]
          Length = 210

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR-NLT 175
           L    +G + + SE   L        +G           +     +   KR  A R  LT
Sbjct: 93  LDAGASGILTYNSEMSDLRAAARRVMNGDNYVQPDMAMDIFAKLRQAEAKRKEAERLRLT 152

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            RE+  ++    G T+ +I+ +L +S  TV  Y+GS   K  A NR++ + +A R G
Sbjct: 153 ARESQVVRHLMQGMTNRQISAELNISEKTVKHYVGSLKDKFGAANRLEVVLEAQRLG 209


>gi|302036525|ref|YP_003796847.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604589|emb|CBK40921.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           V+   L      + +   LT R+   LQL  +G+T ++IA  L +S  TV  + G    +
Sbjct: 133 VVESMLRGIDGGAPSGPELTTRQREVLQLLAEGHTVKDIAGTLNISPRTVEFHKGQIMEQ 192

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L+    ++ +  A+  G 
Sbjct: 193 LNLHTTVELVKYALAQGL 210


>gi|59712516|ref|YP_205292.1| DNA-binding response regulator in two-component regulatory system
           with NarQ [Vibrio fischeri ES114]
 gi|59480617|gb|AAW86404.1| DNA-binding response regulator in two-component regulatory system
           with NarQ [Vibrio fischeri ES114]
          Length = 203

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 11/131 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
              L    +    +   V         +I              + +I       +    +
Sbjct: 66  LHALRNEGVTCPIVILTVSDNKQDIKTLIKAGADGYLLKDSEPDELIALLKEAMKGGKAY 125

Query: 161 -------LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                  LE   +       LT RE   LQ    G  ++++A+KL +S  TV  ++ S  
Sbjct: 126 SEQVKTCLEEDAQGDDKLSQLTARELEILQHVAKGMRNKQVADKLFISEATVKVHMKSLL 185

Query: 214 VKLDAVNRIQA 224
            KL+  +R+ A
Sbjct: 186 KKLNVKSRVAA 196


>gi|49480425|ref|YP_039344.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196036499|ref|ZP_03103894.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906530|ref|YP_002454364.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|300117868|ref|ZP_07055635.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301056821|ref|YP_003795032.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|49331981|gb|AAT62627.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195990832|gb|EDX54805.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538999|gb|ACK91397.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|298724732|gb|EFI65407.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300378990|gb|ADK07894.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 200

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|41409369|ref|NP_962205.1| hypothetical protein MAP3271c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398189|gb|AAS05819.1| hypothetical protein MAP_3271c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 222

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   +   L     ++     LTE+E + L L  +G T+ +IA ++ L+  TV  Y
Sbjct: 125 LDNRAAAALMAKLRGSAAQADPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNY 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           +     KL    R QA   A + 
Sbjct: 185 VSRLLAKLGMERRTQAAVFASKL 207


>gi|53712701|ref|YP_098693.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60680860|ref|YP_211004.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|253563324|ref|ZP_04840781.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|265762790|ref|ZP_06091358.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|52215566|dbj|BAD48159.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60492294|emb|CAH07059.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|251947100|gb|EES87382.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|263255398|gb|EEZ26744.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|301162406|emb|CBW21951.1| putative transcriptional regulatory protein [Bacteroides fragilis
           638R]
          Length = 225

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT  E   L+    G T++EIA +  LS HT+N++  +   KL   N  +A   A+R G 
Sbjct: 158 LTPTEKIILKEIASGKTTKEIAAEKHLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 217

Query: 234 I 234
           +
Sbjct: 218 V 218


>gi|158315636|ref|YP_001508144.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111041|gb|ABW13238.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 249

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS------AARNL 174
           L     G+++  +   +LA  V   A         V    L  F               L
Sbjct: 117 LRAGARGFLLKDAGPDLLAQAVHAAACGDALIAPNVTARLLATFAGSGPAPVPAQPVEAL 176

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           T+RE   L     G T+ EIA  L +S+ TV  ++ S   KL A NR++    A + G
Sbjct: 177 TDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGARNRVEIALWAYQTG 234


>gi|302036302|ref|YP_003796624.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604366|emb|CBK40698.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 216

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 11/120 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---------QVITDFLELFKKRSSAARNL 174
           L     GY++  ++   L  E+ I+A                +  + +  + ++     L
Sbjct: 96  LRAGAAGYLLKDADRNEL--ELAIKAVWRSETYLTPSMTKFAVDAYCQQGEAQTGPLARL 153

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T R+   LQL  +G ++++IA++L LSV TV  +      +LD  +    +  AIR G +
Sbjct: 154 TGRQREILQLIAEGCSTKQIAQRLDLSVKTVETHRAQLMERLDIHDVPGLVRLAIRTGLV 213


>gi|253572144|ref|ZP_04849548.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251838324|gb|EES66411.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 230

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G  S+EI++ L +SVHTVN +  +   K++  N ++AI  A + G
Sbjct: 168 KLTKREVEILKLVNKGMFSKEISDSLSISVHTVNNHRQNILQKMNTDNVVEAINYARKLG 227

Query: 233 YI 234
            +
Sbjct: 228 LL 229


>gi|224540370|ref|ZP_03680909.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518021|gb|EEF87126.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 219

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 41/94 (43%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            + +     +     +++       + +     LT  E S L+    G T++EIA +  L
Sbjct: 119 ASRKERFICNHVSNLLLSGSNASPVRHTLKDDLLTPAERSVLKEIALGKTTKEIAAEKNL 178

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S HTVN++  +   KL   N  +A   A++ G +
Sbjct: 179 SFHTVNSHRKNIFRKLGVNNVHEATKYAMKAGIV 212


>gi|215445032|ref|ZP_03431784.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T85]
 gi|289756976|ref|ZP_06516354.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T85]
 gi|294996369|ref|ZP_06802060.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis 210]
 gi|289712540|gb|EFD76552.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T85]
 gi|326904890|gb|EGE51823.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           W-148]
          Length = 882

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190
                E    A                      +KR +    +LT  E   ++L  +G +
Sbjct: 778 EAMGDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLS 837

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +++IA++L +S  TV  +L     KL   +R+Q + +A R G
Sbjct: 838 NKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|196229129|ref|ZP_03127994.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226361|gb|EDY20866.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 168 SSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              A      LT+RE   L L   GY  +EI E +G+S HTVN++      KL   +R Q
Sbjct: 144 PPPAAQSGEGLTDREREVLDLLAQGYLYKEIGEIMGISTHTVNSHNRHIYEKLQVRSRGQ 203

Query: 224 AIAK 227
           A+AK
Sbjct: 204 AVAK 207


>gi|116694572|ref|YP_728783.1| response regulator [Ralstonia eutropha H16]
 gi|113529071|emb|CAJ95418.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 235

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 38/74 (51%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            ++  +R   A  L+ RE   L L G G T+ EIA+ L LS  TV  ++ +   KL   +
Sbjct: 161 AQIHARRLVGASPLSAREIEILSLVGKGLTNREIADLLSLSRLTVECHIRNIYKKLAVHS 220

Query: 221 RIQAIAKAIRFGYI 234
           R QA+ +A   G +
Sbjct: 221 RTQAVFEARAHGLL 234


>gi|94967299|ref|YP_589347.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549349|gb|ABF39273.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 217

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
             +   +F +   +   E+          V+       +   +    L+ERE     L  
Sbjct: 108 GDDPSKLFAAIRAVADGELAFS-DEVARGVLNAMAAEPQPAPTNLARLSERERQISFLVA 166

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            GY +++IA +L +S +TV  +L S   K  A +R++    A+
Sbjct: 167 RGYKNKDIANELTISENTVKRHLQSIFSKTGARDRLELAVLAL 209


>gi|333020553|gb|EGK39813.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-227]
          Length = 190

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 130 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184


>gi|308397497|ref|ZP_07669369.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu012]
 gi|308366829|gb|EFP55680.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu012]
          Length = 340

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190
                E    A                      +KR +    +LT  E   ++L  +G +
Sbjct: 236 EAMGDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLS 295

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +++IA++L +S  TV  +L     KL   +R+Q + +A R G
Sbjct: 296 NKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 337


>gi|307565431|ref|ZP_07627920.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
 gi|307345881|gb|EFN91229.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
          Length = 200

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G  ++EIA+KL +S+ TV  +  +   KL   +       A+  GY
Sbjct: 135 LSNREIEVLSLIVQGMINKEIADKLNISLTTVITHRKNIMDKLGMRSVSALTIYAVMHGY 194

Query: 234 I 234
           +
Sbjct: 195 V 195


>gi|307327309|ref|ZP_07606496.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886988|gb|EFN17987.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 212

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L + +   A G          +L  + R      LT+RET  L  
Sbjct: 100 AGAIGYLLKDTTREQLVDAIHAAARGETVLAPRVAEKLVARMRRPVQEPLTDRETEVLGA 159

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG T+ EI  +L ++  TV  +L     KLD  +R +A+  A+  G +
Sbjct: 160 VADGLTNAEIGRRLVIAEATVKTHLLRLFAKLDVNDRTRAVVVAMERGLL 209


>gi|297190931|ref|ZP_06908329.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150692|gb|EFH30738.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 83

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 33/76 (43%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                 +  +    NLT RE     LA  G T+EEIA  + +S  T   ++  A  KL A
Sbjct: 1   MARPPDRSTARGMENLTRREREVTALAARGLTNEEIAAHMVISPFTAKTHISRAMNKLGA 60

Query: 219 VNRIQAIAKAIRFGYI 234
            +R Q +  A   G +
Sbjct: 61  RDRAQLVVFAYESGLV 76


>gi|312200594|ref|YP_004020655.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231930|gb|ADP84785.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 214

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 151 GACYQVITDFLELFKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                V    +E F +R           LT+RE   + L G G +++EIA +L +S  T 
Sbjct: 126 LLSPAVTRRVIEAFARRPVGPGAPDLDGLTDREREVMGLVGHGLSNDEIAARLVISPATA 185

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++    VKL A +R Q    A + G +
Sbjct: 186 RTHVSRVMVKLGARDRAQLAVLANQAGLV 214


>gi|239979053|ref|ZP_04701577.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291450931|ref|ZP_06590321.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353880|gb|EFE80782.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 227

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                +        ++  +    L   T RE   L     G +++EIA +L +S  TV  
Sbjct: 136 LIASFLAQSGHGADERPGAREERLAALTGREREVLVHVAGGLSNDEIAGRLQVSPLTVKT 195

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  A  KL A +R Q +  A   G +
Sbjct: 196 HVNRAMAKLGARDRAQLVVTAYETGLV 222


>gi|226225820|ref|YP_002759926.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089011|dbj|BAH37456.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 213

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---------- 154
             R+    L    +   +    H  G  +       L  + + +                
Sbjct: 69  LRRVRAKGLTTRVLVLSMHDETHLVGQALSAGADGYLLKDSMDDELFFAIESVLRGQRYL 128

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
               D   L + R     +LT RE   LQL  +G T+  +AE L +S HT   +  +   
Sbjct: 129 AAAIDRARLQESRMRPV-SLTAREREVLQLIANGLTTSAVAEALNISPHTATRHRANLMQ 187

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+  N+++ +  A   G I
Sbjct: 188 KLNVHNQVELVRIAASQGLI 207


>gi|225869438|ref|YP_002745386.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702714|emb|CAX00841.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 199

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTE E   L+L  D Y++E+I++KL +S  TV+ ++ +   KL+  +R+ A+ +AIR   
Sbjct: 139 LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKL 198

Query: 234 I 234
           I
Sbjct: 199 I 199


>gi|225871440|ref|YP_002747387.1| response regulator [Streptococcus equi subsp. equi 4047]
 gi|225700844|emb|CAW95568.1| putative response regulator [Streptococcus equi subsp. equi 4047]
          Length = 199

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTE E   L+L  D Y++E+I++KL +S  TV+ ++ +   KL+  +R+ A+ +AIR   
Sbjct: 139 LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKL 198

Query: 234 I 234
           I
Sbjct: 199 I 199


>gi|254516347|ref|ZP_05128406.1| putative transcriptional regulator [gamma proteobacterium NOR5-3]
 gi|219674770|gb|EED31137.1| putative transcriptional regulator [gamma proteobacterium NOR5-3]
          Length = 934

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L      +++I  +L +S HTV  +L     KL+  NR  AIAKA+R G 
Sbjct: 867 LTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKAMRVGL 926

Query: 234 I 234
           +
Sbjct: 927 L 927


>gi|187923376|ref|YP_001895018.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714570|gb|ACD15794.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 292

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 85/230 (36%), Gaps = 24/230 (10%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             ++   L+ L  ++  +    +A+++            +RQ+    L ++  D   I +
Sbjct: 9   DAERRDGLKALLRQIDRLARFNEAQDW-----RQVERTLKRQRPDLLLVDW-EDWMSIAD 62

Query: 67  ILIE--TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
           +      Y D  +   +  + P   + + +E V+    + +       +  A     +  
Sbjct: 63  VRHLLSHYPDLRVAVLSDQISPAAVRDLMDEGVLGVVPRDTDPCL---IVRAFEMVLLGG 119

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
            +   G +        L  +          +   +      +R+  A  L+ R+   ++ 
Sbjct: 120 HYVPPGALAL---DPPLPPD-------ITIRPFDEK-SPPPRRARLANVLSPRQQQIMRC 168

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T++ IA  LG+S  TV  +L S   +L A NR  A+  A+  G++
Sbjct: 169 VHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|117618841|ref|YP_856117.1| LuxR family DNA-binding response regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560248|gb|ABK37196.1| DNA-binding response regulator, LuxR family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 212

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 14/124 (11%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSS------- 169
           +   V         ++       L  +   E   A    V+T    L +           
Sbjct: 83  VILTVSDARQDVVALLKAGADGYLLKDTEPEMLLAQLADVMTGKQILSEPLRPYLENIYE 142

Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +LT RE   L+    G +++++A  L +S  TV  ++ S   KL+A +R++
Sbjct: 143 LDHLQQKLESLTRREMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRVE 202

Query: 224 AIAK 227
           A   
Sbjct: 203 AAVM 206


>gi|145596642|ref|YP_001160939.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305979|gb|ABP56561.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 235

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 32/64 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               +TERE   L L G G ++ EIA++L LS  TV  Y+     KL A +R+  +  A 
Sbjct: 151 PLSGITEREREVLTLVGRGLSNSEIADELRLSHATVKTYITRLLSKLGARDRVHLVIAAY 210

Query: 230 RFGY 233
             G 
Sbjct: 211 EAGL 214


>gi|21244146|ref|NP_643728.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109777|gb|AAM38264.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 923

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 827 RALTIQALLERLSGDDDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 887 LYRKLDARSREGALAQALQRGLL 909


>gi|16331921|ref|NP_442649.1| protein kinase [Synechocystis sp. PCC 6803]
 gi|1001838|dbj|BAA10720.1| putative protein kinase [Synechocystis sp. PCC 6803]
          Length = 369

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   + L   G    +IAE+L +S  TV  ++     KL+A NR QAI +A   G+
Sbjct: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQGF 368

Query: 234 I 234
           I
Sbjct: 369 I 369


>gi|325283395|ref|YP_004255936.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324315204|gb|ADY26319.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 235

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 140 MLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
             +++++ EA  A  +            L    +      +LT +E   LQL   G  ++
Sbjct: 122 DASSDLLNEAIHAAARGEVRLHPQAARRLVRDFRAPDMREHLTCKEVEVLQLIARGLNNK 181

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            IA +L +S  TV +++     KL+  +R QA   A++ G 
Sbjct: 182 GIAAQLDISETTVKSHVSRLLGKLELESRTQAALYALKTGL 222


>gi|169628613|ref|YP_001702262.1| putative two-component system response regulator LuxR
           [Mycobacterium abscessus ATCC 19977]
 gi|169240580|emb|CAM61608.1| Putative two-component system response regulator LuxR
           [Mycobacterium abscessus]
          Length = 218

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLT 175
           L     G+++  S    L   V   A G       V +  L  +++  +A        LT
Sbjct: 97  LRAGAAGFILKDSPAEELVRAVHAVARGEAYLDPAVTSRVLNAYRRAPAAVSGDAQDKLT 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L L   G T+ EIAE+L +S  TV +++G   VKLD  +R  AI  A   G +
Sbjct: 157 ARELDVLALIASGATNSEIAEQLVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHGIV 215


>gi|194366116|ref|YP_002028726.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194348920|gb|ACF52043.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 217

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L+    G +++ I E++ +S  TV A++ S   KL   +R  A+ +A+R 
Sbjct: 147 DRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRR 206

Query: 232 GYI 234
           G I
Sbjct: 207 GII 209


>gi|86742706|ref|YP_483106.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86569568|gb|ABD13377.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 275

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 14/217 (6%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRR---QQLICELHNYDLDSGDIPNILIETYGDDF 76
            L      +   +   +++             +    L        D             
Sbjct: 50  VLDAFSAHLGYEHLT-FSLGRHPSLQLELSEPRTRGILPELMARYLDRYAGRDVFAHKFA 108

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF------PVRLGFHKNG 130
                     ++ Q  +     +  G+              I        PV    +   
Sbjct: 109 RQLMQEYGQAVLPQLAEMALGNDRCGEFLEDFLPQNDISDKILVWLDTSLPVHG--YIGV 166

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
                  F    +E++         ++   LE   + + A   L+ RE    +   DG+ 
Sbjct: 167 VATGGRTFDHRDHELLRGLRPTLSYLLRSHLE--HQVAPAGIVLSIREHEIARYVADGWP 224

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  IA +LG+S  TV  ++     K    +R +    
Sbjct: 225 NRLIARELGISEWTVKRHITHVLAKCGVRSRTELAIM 261


>gi|15840308|ref|NP_335345.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           CDC1551]
 gi|31792078|ref|NP_854571.1| LuxR family transcriptional regulator [Mycobacterium bovis
           AF2122/97]
 gi|121636813|ref|YP_977036.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148660668|ref|YP_001282191.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148822100|ref|YP_001286854.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           F11]
 gi|167968338|ref|ZP_02550615.1| hypothetical transcriptional regulatory protein, luxR-family
           [Mycobacterium tuberculosis H37Ra]
 gi|215402688|ref|ZP_03414869.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           02_1987]
 gi|215410477|ref|ZP_03419285.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426158|ref|ZP_03424077.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T92]
 gi|215429747|ref|ZP_03427666.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           EAS054]
 gi|218752554|ref|ZP_03531350.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           GM 1503]
 gi|224989284|ref|YP_002643971.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|254363821|ref|ZP_04979867.1| hypothetical transcriptional regulatory protein (probably
           luxR-family) [Mycobacterium tuberculosis str. Haarlem]
 gi|254549867|ref|ZP_05140314.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260204093|ref|ZP_05771584.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis K85]
 gi|289573518|ref|ZP_06453745.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           K85]
 gi|289744621|ref|ZP_06503999.1| transcriptional regulatory protein, luxR-family [Mycobacterium
           tuberculosis 02_1987]
 gi|289749412|ref|ZP_06508790.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           T92]
 gi|289752945|ref|ZP_06512323.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           EAS054]
 gi|289761024|ref|ZP_06520402.1| transcriptional regulatory protein (probably luxR-family)
           [Mycobacterium tuberculosis GM 1503]
 gi|298524383|ref|ZP_07011792.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775016|ref|ZP_07413353.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu001]
 gi|306783561|ref|ZP_07421883.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu003]
 gi|306787927|ref|ZP_07426249.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu004]
 gi|306796663|ref|ZP_07434965.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu006]
 gi|306802551|ref|ZP_07439219.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu008]
 gi|306966928|ref|ZP_07479589.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu009]
 gi|306971124|ref|ZP_07483785.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu010]
 gi|307078852|ref|ZP_07488022.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu011]
 gi|38258680|sp|P59969|Y914_MYCBO RecName: Full=Putative HTH-type transcriptional regulator Mb0914c
 gi|13880470|gb|AAK45159.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis
           CDC1551]
 gi|31617666|emb|CAD93775.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|121492460|emb|CAL70928.1| Probable transcriptional regulatory protein (probably luxR-family)
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|134149335|gb|EBA41380.1| hypothetical transcriptional regulatory protein (probably
           luxR-family) [Mycobacterium tuberculosis str. Haarlem]
 gi|148504820|gb|ABQ72629.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148720627|gb|ABR05252.1| hypothetical transcriptional regulatory protein, luxR-family
           [Mycobacterium tuberculosis F11]
 gi|224772397|dbj|BAH25203.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289537949|gb|EFD42527.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           K85]
 gi|289685149|gb|EFD52637.1| transcriptional regulatory protein, luxR-family [Mycobacterium
           tuberculosis 02_1987]
 gi|289689999|gb|EFD57428.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           T92]
 gi|289693532|gb|EFD60961.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           EAS054]
 gi|289708530|gb|EFD72546.1| transcriptional regulatory protein (probably luxR-family)
           [Mycobacterium tuberculosis GM 1503]
 gi|298494177|gb|EFI29471.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216369|gb|EFO75768.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu001]
 gi|308331660|gb|EFP20511.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu003]
 gi|308335381|gb|EFP24232.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu004]
 gi|308342922|gb|EFP31773.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu006]
 gi|308350664|gb|EFP39515.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu008]
 gi|308355324|gb|EFP44175.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu009]
 gi|308359263|gb|EFP48114.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu010]
 gi|308363173|gb|EFP52024.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu011]
 gi|323720599|gb|EGB29677.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
          Length = 882

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190
                E    A                      +KR +    +LT  E   ++L  +G +
Sbjct: 778 EAMGDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLS 837

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +++IA++L +S  TV  +L     KL   +R+Q + +A R G
Sbjct: 838 NKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|258592846|emb|CBE69155.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 237

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 28/62 (45%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RET  LQ    G    EIAE L LSV TV  +      KL   NR   +  A+R  
Sbjct: 174 RLTLRETQVLQHIAQGLPDREIAESLQLSVRTVENHAARIRKKLQVDNRTALVRYALRAH 233

Query: 233 YI 234
            I
Sbjct: 234 LI 235


>gi|290955461|ref|YP_003486643.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644987|emb|CBG68073.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   V   A G           L    +     L+ERE   ++L 
Sbjct: 110 AGARGYILKAGPPEELFRAVRAAAAGGMGLAPEAAGHLAGHLADPGAALSEREIEVVRLL 169

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++  IA  L L+  T+  +L     KL   NR   +++A+R G +
Sbjct: 170 ALGRSNRAIAAALHLTEATIKTHLVRVYRKLGTENRASTVSEAVRRGLL 218


>gi|291614280|ref|YP_003524437.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584392|gb|ADE12050.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 219

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +V+  +L+  K  + A+    LT RE   L+L  +G  ++ IA  L +SV TV  + 
Sbjct: 132 IAEKVVNGYLDGGKGINPASAWDTLTLREREVLKLIAEGQGNKHIASYLCVSVKTVEKHR 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+  N     + AI  G +
Sbjct: 192 SNLMRKLNLHNAAVLTSYAIEKGMV 216


>gi|257064489|ref|YP_003144161.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792142|gb|ACV22812.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 258

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 1/108 (0%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQ 183
                G+ +   +                 +  +  +    +        LT RE   L 
Sbjct: 149 RALSRGWRLLDGQRDRRIASDSPAKRRMTQERYSRIVKSTIEPAKPKGDALTPREQEVLV 208

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              DG ++ EIA  +G+S  TV  ++     K +  +R + IA+    
Sbjct: 209 HITDGRSNAEIARIMGISEATVKKHVSHIFDKYNVFSRTELIARVRER 256


>gi|227832318|ref|YP_002834025.1| putative transcription regulator [Corynebacterium aurimucosum ATCC
           700975]
 gi|262183824|ref|ZP_06043245.1| putative transcription regulator [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453334|gb|ACP32087.1| putative transcription regulator [Corynebacterium aurimucosum ATCC
           700975]
          Length = 219

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E  + +  A   LT RE   L+L   GYT  EI ++L +SV TV  +  +   K    NR
Sbjct: 147 EPEEGQDPAVDALTRRELEVLRLLARGYTYREIGKQLFISVKTVETHASNILRKTQQSNR 206

Query: 222 IQAIAKAIRFGY 233
            Q    A     
Sbjct: 207 HQLTRWATSRDL 218


>gi|68163278|dbj|BAE02666.1| hypothetical transcription regulator [Pseudomonas sp. MCI3434]
          Length = 260

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 65/242 (26%), Gaps = 30/242 (12%)

Query: 8   GKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALD--FPRRQQLICELHNYDLDSG 62
           G+   +L +    +  + L+   +   N+ +   ++               + +   D  
Sbjct: 15  GRVIETLDQPNFWTALVRLLGRYVPVDNWVVLIYSAGKPQVLAESPGADGGMDSLFQDYL 74

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
                      D F           + +                R     +    +   V
Sbjct: 75  -----KGLYLLDPFYIANREAPQSGLVRLQDVAPECFEQTDYYQRYFRVNIVTDEVHINV 129

Query: 123 RLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--------- 172
           +L   +   +   S+    L    ++         +     +F++    A          
Sbjct: 130 QLDNQRTLSLSLGSQCRFSLEQGALLGLVRPWVAALMRQRLMFERDPGEAPQQPDNWQSR 189

Query: 173 ----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                      LT RE     L   G +++EIA KL +S  TV  +      KL   ++ 
Sbjct: 190 LEAAAEQLTTPLTGREMEVALLLLSGCSNKEIARKLVISAETVKVHRKHMYGKLGIKSQS 249

Query: 223 QA 224
           + 
Sbjct: 250 EL 251


>gi|332851497|ref|ZP_08433494.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332866803|ref|ZP_08437207.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332874937|ref|ZP_08442788.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|332729950|gb|EGJ61281.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332734411|gb|EGJ65531.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332736880|gb|EGJ67856.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 227

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S   +L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 154 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 213

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 214 KLTHLAIRYGLI 225


>gi|300814540|ref|ZP_07094796.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511367|gb|EFK38611.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 208

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L   G  ++EIA KLG+S +TV  ++     K     R Q   ++   G
Sbjct: 143 QLTPREIQVLRLLTTGVGNDEIASKLGISENTVKTHIAHLLSKTGFKTRTQLAIQSRITG 202

Query: 233 YI 234
           ++
Sbjct: 203 FV 204


>gi|258593175|emb|CBE69506.1| conserved protein of unknown function; putative transcriptional
           regulator [NC10 bacterium 'Dutch sediment']
          Length = 300

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               Q+    L   +K  S   +LT RE   + L   G T+  IAE+L +S  TV  ++ 
Sbjct: 195 LVRQQLAQTQLTASEKTVSPVGDLTRRELQVVTLMRTGATTAAIAEQLFISKTTVRNHIQ 254

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL   +R++A+A 
Sbjct: 255 NIFSKLKVHSRLEAVAY 271


>gi|296139697|ref|YP_003646940.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027831|gb|ADG78601.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 229

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 42/121 (34%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
              AG    +     +       S      + +           IT      +   +   
Sbjct: 102 GLHAGARGYLTKNAGRAEIAAAISAAAAGQSVLDPAVQQRLLASITATPAPAQAAGTPPV 161

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RET  LQL  +G  + +IA +L +S  TV  ++ +   K    +R  A+  A   G
Sbjct: 162 DLTPRETEVLQLIAEGLANRDIAARLFVSESTVKTHINNLFAKAHLRDRAHAVRYAFDTG 221

Query: 233 Y 233
            
Sbjct: 222 I 222


>gi|145299701|ref|YP_001142542.1| two-component system nitrate/nitrite response regulator NarP
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852473|gb|ABO90794.1| two-component system nitrate/nitrite response regulator NarP
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 212

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 14/124 (11%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSS------- 169
           +   V         ++       L  +   E   A    V+T    L +           
Sbjct: 83  VILTVSDARQDVVALLKAGADGYLLKDTEPEMLLAQLADVMTGKQILSEPLRPYLENIYE 142

Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +LT RE   L+    G +++++A  L +S  TV  ++ S   KL+A +R++
Sbjct: 143 LDHLQQKLESLTSREMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRVE 202

Query: 224 AIAK 227
           A   
Sbjct: 203 AAVM 206


>gi|71906325|ref|YP_283912.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71845946|gb|AAZ45442.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 203

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 138 FLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              + ++ ++EA         ++ D     +K +     LT RE   + L   GY + EI
Sbjct: 106 EKPIDHDKMLEAIEQAFNSQSLMQDRKSASEKANYLLGQLTPREQEVMNLVVGGYHNREI 165

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           AEKLG+SV TV  +      KLD  +    +  
Sbjct: 166 AEKLGISVRTVEVHKAHVMSKLDVDSVADLVRL 198


>gi|326772918|ref|ZP_08232202.1| two-component system response regulator TcsR7 [Actinomyces viscosus
           C505]
 gi|326637550|gb|EGE38452.1| two-component system response regulator TcsR7 [Actinomyces viscosus
           C505]
          Length = 230

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                       L+ RE   L L  +  T+++IA +L LS  T+ +++ +   KL   +R
Sbjct: 157 RKEASPLPFGVTLSTRELEVLALISEALTNKQIANRLNLSEATIKSHVSAIIAKLGVPDR 216

Query: 222 IQAIAKAIRFGYI 234
           + A   A++ G +
Sbjct: 217 VGAAVFAMQHGLV 229


>gi|300790264|ref|YP_003770555.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799778|gb|ADJ50153.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 206

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
              +GY++  +    LAN +   A G      +   +L  + R+   + L+ RE   L+L
Sbjct: 96  AGASGYLLKDASRAELANAIRAAARGETVLAPSVAGKLVNRVRNPEPQPLSAREVEVLRL 155

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T+ +I   L +S  TV  +L     KL   +R  A+  A+    +
Sbjct: 156 VAKGGTNADIGRALHISEATVKTHLLRVFGKLGVSDRTAAVTTAMARNLL 205


>gi|298242114|ref|ZP_06965921.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555168|gb|EFH89032.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 17/133 (12%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAH------------GACYQVITDFL 161
           +   +          +              + ++ A                 ++I  F 
Sbjct: 87  LVVTMFEDDDSVFAAMRAGARGYLLKDADRDELVRAIKAVSQGEAIFSPAIAQRMIRYFS 146

Query: 162 ELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            L +  S+ A  +LTERE   L L   G ++  IA++  LS+ TV  ++ +   KL   +
Sbjct: 147 ALPRTASAIAFPDLTERERQILHLIAQGESNTAIAKRFTLSLKTVQNHVSNIFSKLQVAD 206

Query: 221 RIQAIAKAIRFGY 233
           R QAI +A   G 
Sbjct: 207 RAQAIVRARDAGL 219


>gi|294632463|ref|ZP_06711023.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292835796|gb|EFF94145.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 228

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 40/109 (36%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           +  +  S    LT+RE   L   
Sbjct: 119 AGATGYLLKAERPDELFTAIHSAAAGRTALSAPVAHRVMARMRSPRPTLTDRERDILGQL 178

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T+ +IA+ L LS  TV  +LG    KL    R  A+A A     +
Sbjct: 179 SRGLTNRDIAKALFLSEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 227


>gi|256391311|ref|YP_003112875.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357537|gb|ACU71034.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 267

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 12/225 (5%)

Query: 11  SSSLQELSPRLH-LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +  L E   RL   +++        +  ++         +    L  Y  +         
Sbjct: 39  AGDLAEFRERLVTALRSWFGYSGVTV--LHGETAADAVDRGCGVLAGYSAEFLATYAAQG 96

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D   F     L  +    +   T I    +               A  +       
Sbjct: 97  WEREDP--FRDEGFLQRLAEAGVVRLTDISEGARFREEFLVPRGIADKAAMLIDAAPSGV 154

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQ------VITDFLELFKKRSSAAR-NLTERETSCL 182
            +V       +        A     +       +        + +S    +LT RE    
Sbjct: 155 LWVGLAVPDGVGRVSDRDLAVLRVLRRHLTPLAVEQLARNRSREASRGDWDLTPREWDVA 214

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LA  G T+ +IA +L + V TV  +L          +R Q    
Sbjct: 215 DLAAQGLTNRQIAARLFIGVDTVKKHLTRVLAATSCGSRTQLALL 259


>gi|194438019|ref|ZP_03070112.1| transcriptional regulator CsgD [Escherichia coli 101-1]
 gi|194422955|gb|EDX38949.1| transcriptional regulator CsgD [Escherichia coli 101-1]
          Length = 190

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 130 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184


>gi|37528381|ref|NP_931726.1| hypothetical protein plu4562 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787819|emb|CAE16934.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 238

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 23/224 (10%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            KKS ++ EL  RL    N I    F  Y+I     +P   +    + N ++++    N 
Sbjct: 12  IKKSKTMPELEKRLL---NAINYLGFEFYSIYQEEKYPFTTKKYVLITNLNIETASNYNQ 68

Query: 68  LIETYGDDFLFHFNSGLLPIIWQ-----------SIQEETVIESSGQLSVRLEGGLLPFA 116
                 D  +    +  +P +                     E    LS++++G     +
Sbjct: 69  DNNHDSDQLMNGDYTFSIPSVCNDKISKNTDFTIEKSNSNKNEVKNSLSIKIKGYHGERS 128

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176
              F V            +   ++    V+      C +   +      K       L+ 
Sbjct: 129 --IFSVARKEG-----TISHNEILNKAGVLGILANECIKTFNNLKNKKDKIIIPT--LST 179

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           RE   ++   +G TS EIA+ L +S  TVN ++ +   KL   N
Sbjct: 180 REVEVIRWTCEGKTSAEIADILDISTRTVNFHINNVMEKLVVPN 223


>gi|289670915|ref|ZP_06491990.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 235

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      +  A +        H    V +        N+ +        
Sbjct: 86  AAGDGHEAGWLMPPRPADIREARVPIHALGTTHGMLCVAWNESRPAPGNDDVQALQAFAL 145

Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E       ++R          L++RE   L L   G T+  +A +LG++  TV
Sbjct: 146 LLPAMVAEPAKPIATRRRKPVQDDRLGALSKRERQVLSLLPRGLTNATLAAELGIAPGTV 205

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++     KL+  +R QA   A++ G 
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|289641792|ref|ZP_06473950.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508436|gb|EFD29377.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 402

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
             +    +   +   A+G  +               A   LT RE   L+L   G T+  
Sbjct: 300 LAATMNDIEEPIRFGAYGMNHGFAQPVRPFHDTPWPADSRLTRREIDVLRLMAAGNTNAR 359

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           IA++L +S  TV +++     KL+A +R +A++ 
Sbjct: 360 IADRLIISEGTVKSHVKHILRKLNAASRTEAVSI 393


>gi|228925087|ref|ZP_04088207.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228834569|gb|EEM80088.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 592

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|56962495|ref|YP_174221.1| two-component response regulator of nitrate reduction [Bacillus
           clausii KSM-K16]
 gi|56908733|dbj|BAD63260.1| two-component response regulator of nitrate reduction [Bacillus
           clausii KSM-K16]
          Length = 215

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L   G+ ++EIAEKL +SV TV A+      KL+  +R + +  A++  
Sbjct: 152 GLSQREVEILPLIAKGFGNKEIAEKLYVSVKTVEAHKAKIMEKLNLKSRPELVEYALKKK 211

Query: 233 YI 234
            +
Sbjct: 212 LL 213


>gi|270262435|ref|ZP_06190706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043119|gb|EFA16212.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 206

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 119 AFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             P+ +   K G   F      S+ L+ A +  +         + +  EL ++       
Sbjct: 85  TIPLSVQAMKAGAHEFLTKPVASDDLLKAVQEALNLAAENSDQLREHYELKQRHL----T 140

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L   G  +++IA +LG+S  TV  +      K+   +    +  A R   
Sbjct: 141 LTPREQEVLELTIKGLMNKQIAAELGVSEITVKVHRRRVMDKMQVRSLADLVRHAERLNL 200


>gi|300781389|ref|ZP_07091243.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533096|gb|EFK54157.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 228

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +      S   +++            +   + + L      A + LTERE   L   G G
Sbjct: 115 DAIRTVASGDAVISPRATNRIVAKLSEAPAETIPLSTADRRAIQELTEREHEILIAVGRG 174

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +T+ EIAE+L +S+ TV  ++G   +K  + +R+ A   A R G +
Sbjct: 175 WTNTEIAERLFISMPTVKTHVGRVLMKTHSRDRVHAALFAYRTGLV 220


>gi|269929059|ref|YP_003321380.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788416|gb|ACZ40558.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 214

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L     G ++ EIAE L +S  TV  ++     KL   +R+QA+  AI+ G
Sbjct: 142 PLSTREVEILDCMVRGLSNREIAEALFISEQTVKNHMSRLFHKLHVRDRLQAVLFAIQHG 201

Query: 233 YI 234
           ++
Sbjct: 202 WV 203


>gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 213

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 11/94 (11%)

Query: 148 EAHGACYQVITDFLELFKKRSSAAR-----------NLTERETSCLQLAGDGYTSEEIAE 196
           E        +     L +  +                LT  ET  +QL   G  + EIA+
Sbjct: 116 ELAAQVQSCLRQADRLLQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIAD 175

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            L +S  TV +++ +   K    NR +    AI+
Sbjct: 176 HLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQ 209


>gi|21222068|ref|NP_627847.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|4753877|emb|CAB42040.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
          Length = 248

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   LQL G G ++ E A++L +S  TV  +L     KL   +R QA+  A   G 
Sbjct: 180 LTGREAEVLQLVGRGLSNAEAADRLFISEATVKTHLNRTMTKLGLTSRAQAVVVAYETGL 239

Query: 234 I 234
           +
Sbjct: 240 V 240


>gi|312278646|gb|ADQ63303.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           thermophilus ND03]
          Length = 200

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +  +     L++RE   L +   G T++EIAE L LS  T+  Y+ +   KLDA NR
Sbjct: 127 ELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTIRNYMTAILTKLDAGNR 186

Query: 222 IQAIAKAIRFGYI 234
             A+  A    ++
Sbjct: 187 TDAVRIAKEKDWL 199


>gi|302557464|ref|ZP_07309806.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475082|gb|EFL38175.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 230

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195
            ++A    + A     ++I  F        +A   L   T+RE   L L G G +++EI 
Sbjct: 130 RVVAAGDALLAPRITRRLIGQFTSQRVAAQAAEDRLSVLTQREREVLALVGQGLSNDEIG 189

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L LS  T   ++  A VKL A +R Q +  A R G +
Sbjct: 190 AELCLSPATARTHVSHAMVKLGARDRAQLVVVAYRTGLV 228


>gi|291537088|emb|CBL10200.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis M50/1]
          Length = 241

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           A  L+ RE   ++L   GY+++EIA +L +S  TV  +L +   KL    R Q 
Sbjct: 187 ADLLSGREQEIVRLVRKGYSNQEIAGQLLISEATVKKHLSNIFEKLGISRRTQL 240


>gi|239932624|ref|ZP_04689577.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440983|ref|ZP_06580373.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343878|gb|EFE70834.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA +L +S  TV +++ +   KL A +R QA+  A   G
Sbjct: 156 RLTEREAEVLRLMARGLSNAEIAARLVVSTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215

Query: 233 YI 234
           ++
Sbjct: 216 FV 217


>gi|239831204|ref|ZP_04679533.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823471|gb|EEQ95039.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 213

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 4/127 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166
           +         I+  +  G         ++  ++ A   +          V    L+  ++
Sbjct: 85  MLSMHDSREYISTSIMRGASGYVLKDVSTAEIVAAIHAVASGGTYFSSGVSEALLDSGER 144

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +S     L+ RE   L L  +G ++ EIA +LG+S  TV  +  +   KL   +      
Sbjct: 145 KS---EGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTR 201

Query: 227 KAIRFGY 233
            AI    
Sbjct: 202 YAIENRL 208


>gi|254507428|ref|ZP_05119563.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
 gi|219549684|gb|EED26674.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
          Length = 209

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A   +      +  + +    +LT RE   L+    G ++ +IAE   +S  TV ++L  
Sbjct: 127 AAQLLFHYRNMVETQSAPVTVDLTTREIHILRSLMTGASNSQIAEDQFISEFTVKSHLYQ 186

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL   NR+QA A A + 
Sbjct: 187 IFKKLCVKNRVQAAAWARQH 206


>gi|167586712|ref|ZP_02379100.1| DNA-binding response regulator NarL [Burkholderia ubonensis Bu]
          Length = 76

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + A   LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    
Sbjct: 3   AGAPAALTPREHDIVRAIARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVY 62

Query: 228 AIRFGY 233
           A+  G 
Sbjct: 63  AVEQGL 68


>gi|116672252|ref|YP_833185.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612361|gb|ABK05085.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24]
          Length = 426

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 161 LELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           L L       A      L +RE   LQL   G  +  IA KL +S +TV  +L +   K+
Sbjct: 349 LPLDPPARPLADVSDWKLGDRELEVLQLLAAGQRNRAIAAKLHISENTVKFHLRNIYRKV 408

Query: 217 DAVNRIQAIAKAIRFG 232
            A +R +AIA A   G
Sbjct: 409 GATSRTEAIAMAHSNG 424


>gi|253800086|ref|YP_003033087.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 1435]
 gi|289555327|ref|ZP_06444537.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 605]
 gi|297633408|ref|ZP_06951188.1| transcriptional regulator, luxR-family protein [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730393|ref|ZP_06959511.1| transcriptional regulator, luxR-family protein [Mycobacterium
           tuberculosis KZN R506]
 gi|313657720|ref|ZP_07814600.1| transcriptional regulator, luxR-family protein [Mycobacterium
           tuberculosis KZN V2475]
 gi|253321589|gb|ACT26192.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 1435]
 gi|289439959|gb|EFD22452.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 605]
 gi|328459824|gb|AEB05247.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 4207]
          Length = 882

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIA 195
           E    A                      +KR +    +LT  E   ++L  +G ++++IA
Sbjct: 783 EDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLSNKDIA 842

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++L +S  TV  +L     KL   +R+Q + +A R G
Sbjct: 843 KRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|315500154|ref|YP_004088957.1| two component transcriptional regulator, luxr family [Asticcacaulis
           excentricus CB 48]
 gi|315418166|gb|ADU14806.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 239

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              + +  A  +T RE   L L   G + +E A  L +S HTV  ++ +   KL   +R 
Sbjct: 166 AEPELAEDAPGITPREIELLSLLAKGLSYKEAASVLDISHHTVGTHVKAIYRKLAVNSRS 225

Query: 223 QAIAKAIRFGYI 234
           +A+ +A+R G I
Sbjct: 226 EAVFEAVRSGLI 237


>gi|150389353|ref|YP_001319402.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949215|gb|ABR47743.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 220

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE    +L  +G  ++EIA +L ++  T   Y+ S   K+   +R  A+      
Sbjct: 159 EKLSEREIEIAKLMLEGLNNKEIASELFITQGTAKNYISSIYSKIGVRDRTNAVLFFRSH 218

Query: 232 GY 233
           G+
Sbjct: 219 GF 220


>gi|186687224|ref|YP_001870367.1| two component LuxR family transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186469527|gb|ACC85326.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 217

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L+  E   + L  DG +++ IAE+L ++  TV  ++     KLD  +R+ A+ +A + 
Sbjct: 147 DHLSATEMQIISLMADGSSNKLIAERLFITESTVKGHINKIFAKLDVKDRVNALIEASKL 206

Query: 232 GYI 234
           GYI
Sbjct: 207 GYI 209


>gi|15599116|ref|NP_252610.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116051961|ref|YP_789196.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296387556|ref|ZP_06877031.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|9950105|gb|AAG07308.1|AE004809_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115587182|gb|ABJ13197.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 906

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
            ++  E   E     +++         G   P+         ++      +        A
Sbjct: 768 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 819

Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                ++     E   +   SA   L+ RE + L+L   G +++EI+E+L +S+HTV ++
Sbjct: 820 CPGAQRMRALLPEPPAEPAGSAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 879

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL    R QA+A+A   G +
Sbjct: 880 ARHINDKLGVERRTQAVARAKHMGLL 905


>gi|328880752|emb|CCA53991.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 227

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                    +++   LTERE   + L G G ++ EIA +L +S  T   ++  A VKL A
Sbjct: 146 AARSKAPGAAASLGALTEREREVMALVGIGLSNGEIARRLVVSPLTAKTHVSRAMVKLGA 205

Query: 219 VNRIQAIAKAIRFGYI 234
            +R Q +  A   G +
Sbjct: 206 RDRAQLVVLAYESGLV 221


>gi|294667407|ref|ZP_06732625.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602848|gb|EFF46281.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 923

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 827 RALTIQALLERLSGDDDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 887 LYRKLDARSREGALAQALQRGLL 909


>gi|256390216|ref|YP_003111780.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356442|gb|ACU69939.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 203

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGY 189
              +L                +      L  +R   A       LT RE   L+    G 
Sbjct: 98  ARGYLHKDASRAELRATVSQALADPTWRLAPRRLRPAEIGAVPTLTAREIQVLEGMSHGR 157

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ EI   L LS  TV  +      KL A +R  A+A   R+G +
Sbjct: 158 SNAEIGRDLFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202


>gi|50120831|ref|YP_049998.1| transcriptional regulator NarP [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611357|emb|CAG74804.1| nitrate/nitrite response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 210

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
              L    +    I   V         ++            A E ++++  +        
Sbjct: 71  LHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDSIRSSDAFSEQV 130

Query: 161 LELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            +  + R       S    LTERE   LQ    G ++++IA  L +S  TV  ++ +   
Sbjct: 131 RDALRHRIAIKETPSPFTVLTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLR 190

Query: 215 KLDAVNRIQAIAK 227
           KL+  +R+ A   
Sbjct: 191 KLNVRSRVAATVL 203


>gi|320333040|ref|YP_004169751.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754329|gb|ADV66086.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 220

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE + L     G ++++IA++LG+S  TV  +L +   KL A NR +A+ +A +  
Sbjct: 158 PLTAREQAILGALSAGASNKQIAQRLGISDGTVKTHLSNLFFKLGAANRTEAVYRARQLR 217

Query: 233 YI 234
            +
Sbjct: 218 LL 219


>gi|229493089|ref|ZP_04386884.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229320119|gb|EEN85945.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 219

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E+ ++   +   L+ RE   L L   G +   IA +L L+  TV  ++     KL   +R
Sbjct: 146 EVRRRSEPSGPTLSAREREVLGLIAQGASIPVIASQLFLAPSTVKTHVQRLYEKLGVNDR 205

Query: 222 IQAIAKAIRFGYI 234
             A+A A+R G +
Sbjct: 206 GAAVAAAMRQGLL 218


>gi|297624009|ref|YP_003705443.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297165189|gb|ADI14900.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 211

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 154 YQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            +++ +    L +        LTERE S L     G T +EIAE+LG+S  TV  Y   A
Sbjct: 129 ARLLAELARDLSESGPYRHVRLTERERSVLARIAQGCTYKEIAEELGISDKTVATYRERA 188

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL    R + +  A++ G I
Sbjct: 189 AEKLGLKTRAELVRYALQHGLI 210


>gi|282865368|ref|ZP_06274420.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559841|gb|EFB65391.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +++                L+ERE   ++L   G T+ EIA +L +SV TV  +LG
Sbjct: 131 AITVRLLRRLNNAVPTSREPHTALSEREKDLVRLVARGLTNAEIATELTISVGTVKTHLG 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL A NR++  A A   G +
Sbjct: 191 NVQTKLSARNRVEIAAWAWESGLV 214


>gi|254776638|ref|ZP_05218154.1| transcriptional regulator, LuxR family protein [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 523

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                       ++   A   +      +  + +     LT RE   L     G +++EI
Sbjct: 417 ARRLRGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEI 476

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  L +S  T   ++     K+   NRI A   A++ G +
Sbjct: 477 AAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGLV 516


>gi|297196049|ref|ZP_06913447.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723312|gb|EDY67220.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              +   +  + LT RE   L+L  +G +S++IAE L +SV TV  +  +   KL   +R
Sbjct: 145 RARQGHETPDQILTAREEEVLKLVAEGRSSKDIAEILFISVKTVQRHRANLLRKLGLRDR 204

Query: 222 IQAIAKAIRFGYI 234
           +     AIR G I
Sbjct: 205 LDLTRYAIRAGLI 217


>gi|197335139|ref|YP_002156737.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri
           MJ11]
 gi|197316629|gb|ACH66076.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri
           MJ11]
          Length = 203

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 11/131 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQV---- 156
              L    +    +   V         +I              + +I       +     
Sbjct: 66  LHALRNEGVTCPIVILTVSDNKQDIKTLIKAGADGYLLKDSEPDELIALLKEAMKGGKAY 125

Query: 157 ---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +   LE   +       LT RE   LQ    G  ++++A++L +S  TV  ++ S  
Sbjct: 126 SEQVKACLEEDAQGDDKLSQLTARELEILQHVAKGMRNKQVADQLFISEATVKVHMKSLL 185

Query: 214 VKLDAVNRIQA 224
            KL+  +R+ A
Sbjct: 186 KKLNVKSRVAA 196


>gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 231

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 36/101 (35%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
              +       E I        Q +               +LT RE S L L  +G  ++
Sbjct: 129 SLQATSENARLEEIARDIRELKQQVGQQNTFTTTPPPIKIDLTPREQSVLDLVAEGLMNK 188

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           EIA +L  SV  V  Y+     K    +R + +  A++ G 
Sbjct: 189 EIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 229


>gi|118464557|ref|YP_883346.1| LuxR family transcriptional regulator [Mycobacterium avium 104]
 gi|118165844|gb|ABK66741.1| transcriptional regulator, LuxR family protein [Mycobacterium avium
           104]
          Length = 523

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                       ++   A   +      +  + +     LT RE   L     G +++EI
Sbjct: 417 ARRLRGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEI 476

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  L +S  T   ++     K+   NRI A   A++ G +
Sbjct: 477 AAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGLV 516


>gi|332978517|gb|EGK15227.1| response regulator [Psychrobacter sp. 1501(2011)]
          Length = 211

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    L   ++  S    L+ERE     +  +  + ++IA++L +SV TVN Y   
Sbjct: 129 VAEQLADMLLTDNEE--SPFDRLSEREKQVAMMVVNCQSPQQIADQLFVSVKTVNTYRYR 186

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              K+   + ++    A+R G I
Sbjct: 187 IFEKVGVDSDVKLTHLAMRHGLI 209


>gi|239927379|ref|ZP_04684332.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435723|ref|ZP_06575113.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338618|gb|EFE65574.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 222

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177
              +GYV+ +     L                GA   +I ++L  +     +  + LT R
Sbjct: 104 AGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRDGEEAPEQLLTPR 163

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  +G++S+EIAE L +SV TV  +  +   KL   +R+     AIR G +
Sbjct: 164 EEEVLKLVAEGHSSKEIAELLFISVKTVQRHRENLLHKLGLRDRLDLTRYAIRAGLV 220


>gi|167622824|ref|YP_001673118.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167352846|gb|ABZ75459.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 211

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157
              L    +    +   V         ++              +++++        ++VI
Sbjct: 69  LNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLDMLKNAMLGHRVI 128

Query: 158 TDFLE--LFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           ++ ++  L +  SS        NLT RE   LQ   +G ++  +AE+L +S  TV  ++ 
Sbjct: 129 SNTVQEYLSELNSSVNEQEWIENLTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 232

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 36/101 (35%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
              +       E I        Q +               +LT RE S L L  +G  ++
Sbjct: 130 SLQATSENARLEEIARDIRELKQQVGQQNTFTTTPPPIKVDLTPREQSVLDLVAEGLMNK 189

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           EIA +L  SV  V  Y+     K    +R + +  A++ G 
Sbjct: 190 EIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230


>gi|157960657|ref|YP_001500691.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157845657|gb|ABV86156.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 209

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157
              L    +    +   V         ++              ++++E        ++VI
Sbjct: 69  LNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEMLKNAMLGHRVI 128

Query: 158 TDFLE--LFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +D ++  L +  SS        NLT RE   LQ   +G ++  +AE+L +S  TV  ++ 
Sbjct: 129 SDTVQEYLSELNSSVNEQEWLENLTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|150398035|ref|YP_001328502.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150029550|gb|ABR61667.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 262

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT RE   L L   G  ++ IA++LGLS +TV  ++ +   K++  NR +A ++  R
Sbjct: 188 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFR 244


>gi|148653231|ref|YP_001280324.1| two component LuxR family transcriptional regulator [Psychrobacter
           sp. PRwf-1]
 gi|148572315|gb|ABQ94374.1| two component transcriptional regulator, LuxR family [Psychrobacter
           sp. PRwf-1]
          Length = 211

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    L   ++  S    L+ERE     +  +  + ++IA++L +SV TVN Y   
Sbjct: 129 VAEQLADMLLTDNEE--SPFDRLSEREKQVAMMVVNCQSPQQIADQLFVSVKTVNTYRYR 186

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              K+   + ++    A+R G I
Sbjct: 187 IFEKVGVDSDVKLTHLAMRHGLI 209


>gi|330891428|gb|EGH24089.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 222

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     ++   +LT RE   L L G G+++ EI EKLG
Sbjct: 120 RVARGEEALNSTVSARLLRRMTERNTSGAALPESLTPRERQVLGLVGGGFSNREIGEKLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|312131027|ref|YP_003998367.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311907573|gb|ADQ18014.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 210

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  +++S    LT+RET  L L  + Y+++EIA+KL LS+ TV A+  S   KLD  N  
Sbjct: 138 LSGRKNSIEVKLTKRETEILALIANEYSNQEIADKLFLSIRTVEAHRNSLNQKLDIKNTA 197

Query: 223 QAIAKAIRFGYI 234
             + +A+  G I
Sbjct: 198 GLVKEALLRGLI 209


>gi|298113037|gb|ADI58626.1| AsuR1 [Streptomyces nodosus subsp. asukaensis]
          Length = 216

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQLAGDGYT 190
           F    ++V+         +    L    + ++           LT RE   L+L  +G +
Sbjct: 91  FGDAVSDVMAGKFYVSTALARRVLRQNGQPATETQPWGTPGTGLTPRELQVLRLVAEGLS 150

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +++ A +L +S H V   +G+   KL+  NR  A+ +A+ +G +
Sbjct: 151 NKQAARRLQISEHGVKRLVGNVLAKLNCPNRTLAVVRALEYGLL 194


>gi|300022129|ref|YP_003754740.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523950|gb|ADJ22419.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 223

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               + +  L      SS    LT RE   L+   +G  ++ IA KLG+S  TV  ++ +
Sbjct: 129 LAEVLKSALLSPVSAGSSGEELLTPREREILECLAEGLNNKTIARKLGISDATVKVHVKN 188

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL+  +R++A     R 
Sbjct: 189 VLRKLNLASRLEAAVWKHRL 208


>gi|239502065|ref|ZP_04661375.1| response regulator [Acinetobacter baumannii AB900]
          Length = 211

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S   +L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMIVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 198 KLTHLAIRYGLI 209


>gi|239816996|ref|YP_002945906.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803573|gb|ACS20640.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 200

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 38/79 (48%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++    E  +   ++   L++R+T  + +   G ++ +IA  L +S HTV  +L     +
Sbjct: 119 LMAGSEEADEPALASNSKLSKRQTQLIAMLDKGMSNRDIATDLEISEHTVKVHLWRLFRR 178

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R QA+  A   G +
Sbjct: 179 LGVKSRTQALHYARTNGLL 197


>gi|254442908|ref|ZP_05056384.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257216|gb|EDY81524.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 200

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 37/80 (46%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+   +    + S    NLT RE   L     G ++++IA KLGLSV T++ +  S   
Sbjct: 115 EVLRSVVRSIDRSSERTDNLTAREREVLTFIASGNSNKDIALKLGLSVKTIDNHRCSMMR 174

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KLD  N       A+    +
Sbjct: 175 KLDLHNVADITRYAVEHRIV 194


>gi|146307561|ref|YP_001188026.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
 gi|145575762|gb|ABP85294.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
          Length = 907

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 10/138 (7%)

Query: 97  VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156
                              A    P+                   A + + E      + 
Sbjct: 777 RATLEEAWQRGYRRLFQDDALWLLPLWD------AWCSAEPKCAAAWQGLAELLREQCRR 830

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +     +  +     ++++ RE   L+L   G ++ +IA+ + LS  T+  +L +   KL
Sbjct: 831 MA----IDPESFEENQDVSHREREILRLVAAGLSNRDIAQTVHLSEATIKWHLHNLFSKL 886

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+ K    G +
Sbjct: 887 GVRSRTQAVLKGKSLGLL 904


>gi|319761227|ref|YP_004125164.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317115788|gb|ADU98276.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 224

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 1/122 (0%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKK 166
                     +   +                 +++ E++ +   A   Q   +       
Sbjct: 96  AALRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPEPDPGPMP 155

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               A  L+ RE   L+    G +++EIA +L ++  TV  ++     KL   +R+QA  
Sbjct: 156 PDDPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAV 215

Query: 227 KA 228
            A
Sbjct: 216 YA 217


>gi|239930016|ref|ZP_04686969.1| erythropoiesis-stimulating protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291438353|ref|ZP_06577743.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341248|gb|EFE68204.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 328

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 68/225 (30%), Gaps = 13/225 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           K  S+ ++  R+  + +       A           + ++ +      D  + D    L 
Sbjct: 115 KLRSMDQIQSRIEHLADTCTTEIAAFV-----PGGGQSERHLEAARPLDRAATDRGVRLR 169

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
             + D       +      +     E   +      +     +        P        
Sbjct: 170 YVFLDS----ARNCPATRAYAEWLTERGGQVRTAPRLPSRMLVYDRVTAILPTDPAAADL 225

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G ++      + A   + +        + + +             +  E + L+L  +G 
Sbjct: 226 GALVLHGTGAVAALMTLFDQTWQQSCPLGEAVATRTDDDRP----SPPEQAVLELLAEGM 281

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T + +A +LG+SV TV         +L A +R +A   A   G++
Sbjct: 282 TDDAMARQLGVSVRTVRRITADLMHRLGARSRFEAGVLAHSRGWV 326


>gi|256422119|ref|YP_003122772.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256037027|gb|ACU60571.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 222

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           K + A   LT RE   L     G+  +EIA  L +S+ TV  ++ +   KL   +R  A+
Sbjct: 157 KPNPALEALTSREKEILDQLSKGFLYKEIASNLFISIETVRRHVHNIYEKLHVRSRTDAV 216

Query: 226 AK 227
            K
Sbjct: 217 NK 218


>gi|41409450|ref|NP_962286.1| hypothetical protein MAP3352c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398281|gb|AAS05902.1| hypothetical protein MAP_3352c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 523

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                       ++   A   +      +  + +     LT RE   L     G +++EI
Sbjct: 417 ARRLRGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEI 476

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  L +S  T   ++     K+   NRI A   A++ G +
Sbjct: 477 AAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGLV 516


>gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT  E   +Q    G  + EIAE+L +S  TV +++ +   K +  NR +    AI  
Sbjct: 164 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222


>gi|293607035|ref|ZP_06689378.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292814525|gb|EFF73663.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 218

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           + IT         ++  R+LT ++   LQ+ G G  +++IA +L +S  T+ A++ +   
Sbjct: 131 RAITAAPARAPTLAATVRDLTPQQFRVLQMVGAGLLNKQIAHELQISEATIKAHMTAIMR 190

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   NR QA+  A R G 
Sbjct: 191 KLRVTNRTQAVLIAGRLGL 209


>gi|291482971|dbj|BAI84046.1| hypothetical protein BSNT_00932 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 213

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTE+E   L+    G  S+ IA  L +S  TV + L S   KL A +R +A+  A++ G
Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKG 207

Query: 233 YI 234
            +
Sbjct: 208 IL 209


>gi|260185786|ref|ZP_05763260.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446457|ref|ZP_06436201.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           CPHL_A]
 gi|289419415|gb|EFD16616.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           CPHL_A]
          Length = 882

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIA 195
           E    A                      +KR +    +LT  E   ++L  +G ++++IA
Sbjct: 783 EDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLSNKDIA 842

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++L +S  TV  +L     KL   +R+Q + +A R G
Sbjct: 843 KRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|256789340|ref|ZP_05527771.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289773226|ref|ZP_06532604.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289703425|gb|EFD70854.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G   ++I +F    K+ ++      LTERE   + L G G ++EEIA +L +S  T   +
Sbjct: 130 GVTRRLIAEFAARSKEPAAPGEMARLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    VKL A +R Q +  A   G +
Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|325922351|ref|ZP_08184126.1| Transcriptional regulator, LuxR family protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325547170|gb|EGD18249.1| Transcriptional regulator, LuxR family protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 506

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEE 193
               EV+ +A      ++     + +    +         LT RE   L L  +G   +E
Sbjct: 395 AAIEEVMQDASWFSQTLLEKLANVRRANRPSQAQSCGIAELTGRERDVLGLLAEGLADKE 454

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IA++L ++ +TV  ++ +   K+D  +R +AI  A   G+
Sbjct: 455 IAQQLSVAPNTVRNHVAALYSKIDVHSRGEAIVWARERGF 494


>gi|310640405|ref|YP_003945163.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245355|gb|ADO54922.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 199

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  S    LA+ +     G          EL     +    LTERE + L L 
Sbjct: 94  AGTHGYLLKDSPSEELASSIRSIMAGRRIYA----PELVDDAYAEVNPLTEREKTVLALI 149

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  ++EIA +L L+  TV  Y+     KL   NRI+AI +    G+
Sbjct: 150 ADGKNTKEIAGELFLTTGTVRNYISVILDKLGVSNRIEAITRFNEKGW 197


>gi|297162688|gb|ADI12400.1| two component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G   ++I +F    K+ + AA    LTERE   + L G G ++EEIA +L +S  T   +
Sbjct: 133 GVTRRLIAEFAARSKEPAPAAVLAELTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 192

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    +KL A +R Q +  A   G +
Sbjct: 193 VSRTMIKLGARDRAQLVVLAYESGLV 218


>gi|296270643|ref|YP_003653275.1| LuxR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296093430|gb|ADG89382.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM
           43833]
          Length = 74

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           L++RET  ++L   G+++ EIA +L LS  TV  ++     KL   +R  AI
Sbjct: 11  LSKRETEVMELIASGHSNGEIARRLFLSEKTVKNHVNRIYAKLGVRSRTSAI 62


>gi|302535883|ref|ZP_07288225.1| response regulatory protein [Streptomyces sp. C]
 gi|302444778|gb|EFL16594.1| response regulatory protein [Streptomyces sp. C]
          Length = 207

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 37/110 (33%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           G    GY++       L   +   A G           +          LT+RE   L  
Sbjct: 96  GAGATGYLLKAERPEELFAAIHSAAAGRTTLSAPVASRVMAHMRGTRPTLTDRELDILGQ 155

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + +IA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 156 LARGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 205


>gi|166713294|ref|ZP_02244501.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 826

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 41/83 (49%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA +L LS +TV  +L +
Sbjct: 730 RALTIQALLERLSGDDDPAGDIFSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKN 789

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 790 LYRKLDARSRESALAQAVQRGLL 812


>gi|71907962|ref|YP_285549.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71847583|gb|AAZ47079.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 211

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  S +   LT R+T  L+L   G T++EIA  LG+S  TV  +      ++   +   
Sbjct: 140 AEGTSGSGTQLTARQTEILRLVASGRTTKEIARDLGISPKTVEFHRSRLMERIGVHDVTG 199

Query: 224 AIAKAIRFGYIC 235
               A++ G +C
Sbjct: 200 LTRFALQTGVVC 211


>gi|284042762|ref|YP_003393102.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946983|gb|ADB49727.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 46/112 (41%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +R G           + L+ A  +  E        +   +      S    +LT RE   
Sbjct: 106 LRSGARGYVLKEAADDELVQAVRLAREGRTYLNPELGARMAAEPPPSGPPDDLTARELEV 165

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+L   G+T+ EIA++L LS+ TV ++      K+   +R + +  A+  G 
Sbjct: 166 LRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVRYALDHGL 217


>gi|238064361|ref|ZP_04609070.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886172|gb|EEP75000.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 229

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                + +           +    LTERE   L L   G ++  IAE+L +S  T   ++
Sbjct: 134 QALIARYLASLKPATGAVPTELAALTEREREVLTLVAAGLSNNAIAERLYVSPLTAKTHV 193

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL A +R Q +  A + G+
Sbjct: 194 NRIMAKLGARDRAQLVVVAYQTGF 217


>gi|150391892|ref|YP_001321941.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951754|gb|ABR50282.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 208

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
             V+T  L+  K++      LTERE   ++  G+G ++ EI+  L LS  TV  Y+    
Sbjct: 129 ASVLTSMLKEEKEKHHLDLQLTEREHEIIKWVGEGLSNREISAALYLSEGTVRNYVTQLL 188

Query: 214 VKLDAVNRIQAIAK 227
            KL+  +R Q    
Sbjct: 189 EKLNVRDRTQLAIF 202


>gi|296451265|ref|ZP_06893005.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296880383|ref|ZP_06904346.1| DNA-binding response regulator [Clostridium difficile NAP07]
 gi|296259871|gb|EFH06726.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296428624|gb|EFH14508.1| DNA-binding response regulator [Clostridium difficile NAP07]
          Length = 218

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 42/83 (50%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++T    + ++      NLTE+E S ++L  +G  ++EI+++L LS  T+   + +
Sbjct: 134 VAEKIMTPEKMIEQEHLYDMYNLTEKEISIIRLIANGLNNKEISKELFLSEGTIKNNITN 193

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  +R Q    A +   +
Sbjct: 194 ILGKLELRDRTQLAIFAFKNKIV 216


>gi|295108610|emb|CBL22563.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus obeum A2-162]
          Length = 206

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 35/75 (46%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I D +        AA  + ERE   ++L  DG +++EIA +L LS  TV  YL S   KL
Sbjct: 131 IPDLIRNEDGFDYAAHGINEREKEIIRLIADGNSNKEIAAELYLSEGTVRNYLSSILNKL 190

Query: 217 DAVNRIQAIAKAIRF 231
              +R Q      + 
Sbjct: 191 QLRDRTQVAVFYYQH 205


>gi|288904269|ref|YP_003429490.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306830297|ref|ZP_07463468.1| possible response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|288730994|emb|CBI12538.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304427544|gb|EFM30645.1| possible response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 207

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TE++   LQ+  DG T++EIA +L ++  TV  YL          NR QAIA AIR   I
Sbjct: 148 TEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNLI 207


>gi|269977463|ref|ZP_06184435.1| putative Nitrate/nitrite response regulator-like protein
           [Mobiluncus mulieris 28-1]
 gi|307700357|ref|ZP_07637397.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
 gi|269934379|gb|EEZ90941.1| putative Nitrate/nitrite response regulator-like protein
           [Mobiluncus mulieris 28-1]
 gi|307614568|gb|EFN93797.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
          Length = 229

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 4/123 (3%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +  +         +        G              +  + 
Sbjct: 110 RAGARGYVTKTISTPDLVDSIIRVAEGDAAFSP----RLAGFVLDAFGAARSEIVETDNE 165

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   ++L   GY  +EIA +L +SV TV +++ +   KL   NR +    A  
Sbjct: 166 LDSLTSREFEVMRLIARGYAYKEIASELYISVKTVESHVSAVLRKLQLSNRYELSRWAAE 225

Query: 231 FGY 233
              
Sbjct: 226 RRI 228


>gi|255655281|ref|ZP_05400690.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 215

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 42/83 (50%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++T    + ++      NLTE+E S ++L  +G  ++EI+++L LS  T+   + +
Sbjct: 131 VAEKIMTPEKMIEQEHLYDMYNLTEKEISIIRLIANGLNNKEISKELFLSEGTIKNNITN 190

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  +R Q    A +   +
Sbjct: 191 ILGKLELRDRTQLAIFAFKNKIV 213


>gi|212636693|ref|YP_002313218.1| regulatory protein LuxR:response regulator receiver [Shewanella
           piezotolerans WP3]
 gi|212558177|gb|ACJ30631.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella
           piezotolerans WP3]
          Length = 209

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVI 157
              L    +    +   V         ++              +++++        +++I
Sbjct: 69  LNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLDMLKNAMLGHRII 128

Query: 158 TD-----FLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +D       EL    +      NLT RE   LQ   +G ++  +AE+L +S  TV  ++ 
Sbjct: 129 SDNVKEYLSELNSSVNEQEWIENLTPRELEILQHLAEGQSNRVVAEQLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|206970462|ref|ZP_03231415.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735039|gb|EDZ52208.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 200

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|167622780|ref|YP_001673074.1| LuxR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352802|gb|ABZ75415.1| transcriptional regulator, LuxR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 317

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + D   +  +  +    LT RE   +     G T ++IA KL LS  TV+ +L     KL
Sbjct: 241 MGDLYRISLRVKNQLDELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKL 300

Query: 217 DAVNRIQAIAKA 228
               R + ++ A
Sbjct: 301 GINTRSELVSIA 312


>gi|163859318|ref|YP_001633616.1| nitrate/nitrite response regulator protein [Bordetella petrii DSM
           12804]
 gi|163263046|emb|CAP45349.1| nitrate/nitrite response regulator protein [Bordetella petrii]
          Length = 220

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   +Q    G +++ IA +L ++  TV  ++ +   KL+  +R+Q    A+  G
Sbjct: 156 RLTTREREIVQCLAHGASNKVIARQLDIAESTVKIHVQNILKKLNLTSRVQVAVYAVENG 215

Query: 233 YI 234
            +
Sbjct: 216 LV 217


>gi|52082354|ref|YP_081145.1| putative transcriptional regulator YdfI [Bacillus licheniformis
           ATCC 14580]
 gi|52787743|ref|YP_093572.1| YdfI [Bacillus licheniformis ATCC 14580]
 gi|319648225|ref|ZP_08002442.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2]
 gi|52005565|gb|AAU25507.1| putative transcriptional regulator YdfI [Bacillus licheniformis
           ATCC 14580]
 gi|52350245|gb|AAU42879.1| YdfI [Bacillus licheniformis ATCC 14580]
 gi|317389860|gb|EFV70670.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2]
          Length = 212

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTE+E   L+    G  S+ IA  LG+S  TV + L S   KL A +R +A+  A++ G
Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRG 207

Query: 233 YI 234
            +
Sbjct: 208 VL 209


>gi|300785055|ref|YP_003765346.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794569|gb|ADJ44944.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              +E  +++      L++RE   L+L     ++ +IA +L +S  TV  +L +   KL 
Sbjct: 138 RATMESLERQQEQRTLLSDRELEVLRLVAAAMSNAQIASRLFISEGTVKRHLTNIYGKLG 197

Query: 218 AVNRIQAIAKAIRFGYI 234
           AV+R+ AI KA +   I
Sbjct: 198 AVSRVDAIKKAAKARLI 214


>gi|297162250|gb|ADI11962.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 217

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L    E ++                  + +     LTERE   L+L   G T+ EIA  
Sbjct: 118 RLAAEGESLLFPAAVRSFAAARGGNKRAREAMDRAALTEREAEVLRLMARGLTNAEIAGH 177

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +   TV  ++ +   KL A +R QA+  A   G++
Sbjct: 178 LVIGAETVKTHVSAVLAKLGARDRTQAVIAAYESGFV 214


>gi|288917708|ref|ZP_06412071.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350923|gb|EFC85137.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 243

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 35/70 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +     LT+RE   L     G ++ EIA +L L+  TV  ++G    KL+  +R+QA
Sbjct: 163 RDGADRLARLTDRERDVLGEVAAGLSNAEIATRLVLAEGTVKTHVGRILGKLELRDRVQA 222

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 223 VVFAYEIGLV 232


>gi|288921284|ref|ZP_06415567.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288347315|gb|EFC81609.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 217

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH--------GACYQVITDFLELFKKRSSAA 171
           F   L    +GYV+ +     L                      +               
Sbjct: 93  FFAALRAGASGYVLKSVADRDLVEACRAAVRGEAFLYPGAVNALIRDHLERAAAGDPGTG 152

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R +T+RE   L+L  +G++S +IA+ L +SV TV  +  +   KL   +R++    AIR 
Sbjct: 153 RVITDREEEVLKLVAEGHSSRQIADILFISVKTVERHRSNLLQKLGLRDRLELTRYAIRA 212

Query: 232 GYI 234
           G I
Sbjct: 213 GLI 215


>gi|284041724|ref|YP_003392064.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945945|gb|ADB48689.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 218

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 148 EAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
            A  A ++ I   L L      +A   LTERE   L+L   G ++ EIA +L +S  TV 
Sbjct: 127 AATRALFERIAPMLHLDAAPPPSALGELTERELDVLRLLARGLSNGEIAAQLFVSGATVK 186

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++     KL   +R+QA+  A   G +
Sbjct: 187 THVSHLLRKLCLRDRVQAVVFAYDSGLV 214


>gi|229158912|ref|ZP_04286969.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228624523|gb|EEK81293.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 189

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA  L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIARALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 YI 234
           ++
Sbjct: 188 WV 189


>gi|229820223|ref|YP_002881749.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566136|gb|ACQ79987.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 224

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT RE   + L   G ++EEI ++L +S  T   ++  A +KL A +R Q +
Sbjct: 156 DPHPHIDQLTNREHEVVSLVAQGLSNEEIGKRLYVSPATARTHVSHAMLKLSARDRAQLV 215

Query: 226 AKAIRFGY 233
             A + G 
Sbjct: 216 VFAFQSGL 223


>gi|220913455|ref|YP_002488764.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219860333|gb|ACL40675.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 226

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITDFLE--- 162
                +A  V         VI           ++   I +A         V +  L    
Sbjct: 88  GTTRFLALSVSDAAEDVVAVIRAGARGYVTKTISGAEITDAVFRVAGGDAVFSPRLAGFV 147

Query: 163 LFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           L    ++ A         L+ RE   ++L   GY+ +E+A++L +S+ TV  ++ +   K
Sbjct: 148 LDAFGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSAVLRK 207

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R +    A     +
Sbjct: 208 LQLSSRHELTKWAAERRLL 226


>gi|29829281|ref|NP_823915.1| LuxR family transcriptional regulator [Streptomyces avermitilis
            MA-4680]
 gi|29606388|dbj|BAC70450.1| putative LuxR-family transcriptional regulator [Streptomyces
            avermitilis MA-4680]
          Length = 1157

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 9/165 (5%)

Query: 77   LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
            L        P  W                 R+    L  + +A             +   
Sbjct: 982  LLRAEGAGTPRDWSETVTAFEPLERPYDLARVRHR-LAESLLASGADDDARARATELLRL 1040

Query: 137  EFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDG 188
               +        + E+     Q     L    ++S  A       LT RE   L+L   G
Sbjct: 1041 AGAVADHLGARPLAESVALLAQRARLTLSGTTRQSPPADPAEALGLTSRERDVLRLVAAG 1100

Query: 189  YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++ +IAEKL +S  T + ++ +   KL    R +A A A R   
Sbjct: 1101 RSNRQIAEKLFISPKTASVHVSNILAKLGVAGRGEAAALAHRMRL 1145


>gi|258513942|ref|YP_003190164.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777647|gb|ACV61541.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 824

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           IIE   AC   I       +        LTERE   L LA +G    EIA +L +S  TV
Sbjct: 740 IIELLEACEHYIESLSRAPESTV----TLTERELEVLTLAAEGLRRNEIAARLYVSGTTV 795

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L +   KL+   R  A+ KA +   I
Sbjct: 796 KTHLANIYRKLEVGGRTAAVKKAGKLKII 824


>gi|116620723|ref|YP_822879.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223885|gb|ABJ82594.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 216

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                ++ D++   ++R    +   LT RE   LQL  +G  ++E+A  L LS++TV  +
Sbjct: 130 AISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAEGKNNKEVAAILNLSLYTVETH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
            G+   KL+  +  + I  AIR G I
Sbjct: 190 RGNILQKLNLHSGAELILYAIRKGVI 215


>gi|94314084|ref|YP_587293.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357936|gb|ABF12024.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 231

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 22/179 (12%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128
                   P+    +       S   L   L         +              L    
Sbjct: 52  ARARVTDQPVALALVDLGLPDGSGIDLIAELRAADPGLGILVISAWSTQDAILAALRAGA 111

Query: 129 NGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLEL------FKKRSSAARNLT 175
            GYV+   + L +A  +                ++I +           +    +   L+
Sbjct: 112 TGYVVKERDDLEVALALRSVLRGGAPIDPFIARRIIEELHPGPSESANAQTPEPSTERLS 171

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L+L  DG  + EIAE+L LS +TV  ++     KL   +R +AI  A   G +
Sbjct: 172 PREHQILRLVADGLGNREIAERLFLSRYTVECHIKHIYRKLAVSSRTRAINAARSRGLL 230


>gi|332709752|ref|ZP_08429711.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332351579|gb|EGJ31160.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 89

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 38/73 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +   +S     L+ RE   ++    G T+ EIA++L +S  TV+ ++ +   K    NR+
Sbjct: 1   MASGKSQNHATLSYRELQIIEHVAAGLTNLEIAQELAISKRTVDNHISNILTKTSTDNRV 60

Query: 223 QAIAKAIRFGYIC 235
             +  A+++G +C
Sbjct: 61  GLVRWALKWGKVC 73


>gi|300790995|ref|YP_003771286.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800509|gb|ADJ50884.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 261

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 39/99 (39%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
             ++  A   +            D           A  L+ RE   LQL  +G  +  IA
Sbjct: 141 RRYIDPALAALTARPKRTAAPKGDLAHDSPPAPRGAMPLSRREYQVLQLVAEGLENSAIA 200

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + L LSV TV  ++ S   KL A +R  A+  A R G +
Sbjct: 201 KLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRSGIL 239


>gi|223935686|ref|ZP_03627602.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895694|gb|EEF62139.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +    ++ F +  +     +L++RE   L     GY  +EIA++L +S+ TV  +L
Sbjct: 126 MSSHIARKVVQYFHQVPAPNEIASLSKREEEVLHHLAQGYLYKEIADRLSISIDTVRKHL 185

Query: 210 GSATVKLDAVNRIQAIAK 227
            S   KL   +R  A+ K
Sbjct: 186 NSIYNKLHVHSRTDAVVK 203


>gi|330975620|gb|EGH75686.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 704

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELF 164
                LL     + P   G     +     E     +E ++          ++       
Sbjct: 574 DEARALLLR---SLPAASGGALIPFKALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACC 630

Query: 165 KKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 A     L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R
Sbjct: 631 TPSPEPAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKNHASHINNKLGVERR 690

Query: 222 IQAIAKAIRFGYI 234
            QA+A+A   G +
Sbjct: 691 TQAVARAKTLGLL 703


>gi|290958642|ref|YP_003489824.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648168|emb|CBG71276.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSC 181
                       ++A    + A     ++IT+F +L +    +A        LT+RET  
Sbjct: 106 DASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLVQAPRPSAATQLAYGELTDRETEV 165

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G ++ EIAE+L ++  T+  ++    VKL   +R QA   A     +
Sbjct: 166 LVLIAQGLSNSEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 218


>gi|195978994|ref|YP_002124238.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975699|gb|ACG63225.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 199

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTE E   L+L  D Y++E+I++KL +S  TV+ ++ +   KL+  +R+ A+ +AI+   
Sbjct: 139 LTESEIEILRLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIKLKL 198

Query: 234 I 234
           I
Sbjct: 199 I 199


>gi|126729883|ref|ZP_01745696.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126710002|gb|EBA09055.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 212

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE + L     G +++E+A  L +SV TV  +  +   KL           A+  
Sbjct: 143 DPLTNREQTILLQLAQGKSNKEVAVALDISVRTVETHRKNIKRKLGIATTAGLTRYALEH 202

Query: 232 GYI 234
           G +
Sbjct: 203 GVL 205


>gi|51893773|ref|YP_076464.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857462|dbj|BAD41620.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 224

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +A   L+ RE   L+    G T+ EIAE+LGLS +TV  Y+ S   KL+  NR+QA A A
Sbjct: 152 AAESLLSPREAQILRRIAAGNTNREIAEQLGLSENTVKNYVKSILAKLNLENRVQAAAWA 211

Query: 229 I 229
           +
Sbjct: 212 L 212


>gi|302540851|ref|ZP_07293193.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458469|gb|EFL21562.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 228

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L L   G ++ E+A +L L+  TV  ++     KL   +R+QA+  A   G
Sbjct: 152 SLTPRELEVLGLLARGLSNAELATRLYLAEATVKTHVARILAKLGLRDRVQAVIAAYETG 211

Query: 233 YI 234
            +
Sbjct: 212 LV 213


>gi|182435087|ref|YP_001822806.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463603|dbj|BAG18123.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 213

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 49/109 (44%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  +    LA  V   A G      +    L  +  + A  LT RE   LQL 
Sbjct: 103 AGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQLV 162

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G+G ++  I+++L LS  TV ++L     KL   +R  A+A A     I
Sbjct: 163 GEGLSNLRISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211


>gi|118472166|ref|YP_889490.1| DevR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173453|gb|ABK74349.1| two component transcriptional regulatory protein devr
           [Mycobacterium smegmatis str. MC2 155]
          Length = 211

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   +   L    +RS     LT++E   L L G+G T+++IA ++ L+  TV  Y
Sbjct: 125 LDNRAATALMSKLRGDAERSDPLSGLTQQERVLLDLLGEGLTNKQIAARMFLAEKTVKNY 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           +     KL    R QA   A + 
Sbjct: 185 VSRLLAKLGMERRTQAAVFASKL 207


>gi|89094688|ref|ZP_01167624.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
 gi|89081034|gb|EAR60270.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
          Length = 213

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             L+ RE   L +   G +++EIA +L ++  TV A+L S   K    +R+  +  A
Sbjct: 152 EGLSSREHDVLSVLVTGASNKEIARELDITERTVKAHLSSIFQKTGVTDRVSLVLMA 208


>gi|328881569|emb|CCA54808.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 218

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L+  ++ ++                          LTERE   L+L   G T+ EIA +
Sbjct: 119 RLVARSDSLLYPAAVRGLAAEHARNRPPVAPPWVARLTEREAEVLRLVATGLTNAEIAGR 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G+   TV  ++ S   K  A +R QA+  A   G++
Sbjct: 179 MGVGPATVKTHVASVLAKSGARDRTQAVILAYESGFV 215


>gi|325926289|ref|ZP_08187643.1| ATP-dependent transcriptional regulator [Xanthomonas perforans
           91-118]
 gi|325543323|gb|EGD14752.1| ATP-dependent transcriptional regulator [Xanthomonas perforans
           91-118]
          Length = 923

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 827 RALTIQALLERLSGDDDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 887 LYRKLDARSRESALAQALQRGLL 909


>gi|325977247|ref|YP_004286963.1| nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177175|emb|CBZ47219.1| Nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 203

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TE++   LQ+  DG T++EIA +L ++  TV  YL          NR QAIA AIR   I
Sbjct: 144 TEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNLI 203


>gi|307296354|ref|ZP_07576181.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878156|gb|EFN09379.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 250

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +R   A  L++RE   L+    G  ++ I++++ +S  TV  ++ +   KL   NR
Sbjct: 146 ALEVERPVDAACLSDRELEILRWLIMGCPNKVISKRMNISEATVKVHVKAVLRKLRVKNR 205

Query: 222 IQAIAKAIRFGY 233
            QA   A   G 
Sbjct: 206 TQAAIWAANHGM 217


>gi|302334932|ref|YP_003800139.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084]
 gi|301318772|gb|ADK67259.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084]
          Length = 245

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +  R LT+RE   ++L   G +++ +AE+L +S HTV  ++ S   KL+  NR Q    
Sbjct: 181 MAELRRLTKREREVMRLVCVGMSNQRVAEELFISEHTVKLHVSSILKKLNLANRTQLAIY 240

Query: 228 AIR 230
             +
Sbjct: 241 GAK 243


>gi|282801760|gb|ADB02863.1| AzicR5 [Kibdelosporangium sp. MJ126-NF4]
          Length = 214

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++        +  + A  LT RE     L  DG T+ EI  +L +S  T   ++ +   
Sbjct: 134 RLLRHLTGRDDEPDALAEPLTAREREVAGLVADGLTNAEIGTRLFISAGTAKTHVANVQR 193

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   NR+     A   G 
Sbjct: 194 KLGVRNRVGIAIWAQARGL 212


>gi|312195087|ref|YP_004015148.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226423|gb|ADP79278.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 257

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           G    V+ D     ++ +     +LT RE   L+L   G ++++ A +LG+S  TV  ++
Sbjct: 161 GLAALVLGDLSRAARRPAEPGTPSLTAREIEVLRLVAKGLSAKDAAARLGVSPRTVQNHV 220

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
            +   KL   NR++    A+R GY
Sbjct: 221 HNVLSKLRLRNRVELTRFAVRAGY 244


>gi|254496211|ref|ZP_05109106.1| lipolytic enzyme / transcription regulator protein [Legionella
           drancourtii LLAP12]
 gi|254354603|gb|EET13243.1| lipolytic enzyme / transcription regulator protein [Legionella
           drancourtii LLAP12]
          Length = 505

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                  Q   + + + K        LT RE  CL +   G T ++I+E L LS  TVN 
Sbjct: 418 WLALFNDQEFRNNVIMRKAVKKPLTQLTPRELQCLSMISKGMTIKKISEYLHLSSETVNT 477

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  S   K++ VN  +A++KA R G +
Sbjct: 478 HAKSIRTKMNCVNITEAVSKAFRLGLL 504


>gi|207722498|ref|YP_002252934.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2]
 gi|206587679|emb|CAQ18261.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2]
          Length = 252

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 13/209 (6%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             ++  +  R+ A                     +Y  +                +  + 
Sbjct: 28  ESVRPILNHRHLA--CGYGRTTSSGVAMDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWL 85

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           S   P+ +      +  E +  + +            A  V    +  G          +
Sbjct: 86  STRRPVYF---DAASPWEGTDPVWLEKFVKHDLRNCAADAVFDEANCVGTYFSFHALPTV 142

Query: 142 A--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                     ++    HGA  + +       ++ S A   LTERE     L G G ++ E
Sbjct: 143 EEGCLDATLRDLTPALHGALLRAVASVERDLQQASQALATLTEREREVALLIGQGRSNAE 202

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           IA+ +  S  TV  YL S   K    NR+
Sbjct: 203 IAQVVCRSESTVKHYLSSIMDKTGCENRV 231


>gi|145596336|ref|YP_001160633.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305673|gb|ABP56255.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 228

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 18/161 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +   +         +A  V         +I           ++ + + 
Sbjct: 68  LDVHMPEGGGRAVLEAIRRTYPHVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELA 127

Query: 148 EAHGA--------CYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193
            A             ++    L+ F  R            LT RE   L+L   GY  +E
Sbjct: 128 AAVRRVAEGDAVFSPRLAGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKE 187

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA++L +S+ TV  ++ +   KL   +R +    A     +
Sbjct: 188 IAKELYISIKTVETHVSNVLRKLQMSSRYELSRWAADRRLV 228


>gi|330995249|ref|ZP_08319160.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila
           YIT 11841]
 gi|329575966|gb|EGG57486.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila
           YIT 11841]
          Length = 209

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAA---------RNLTERETSCLQLAGDGYTSEEIA 195
           ++                L +                 L++RE   L L   G T++EIA
Sbjct: 106 MVRALLQLQQYAHAHGRHLPQGMRKPISGTTASTDPNGLSQREIEVLILIVRGLTNKEIA 165

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + L +   TV ++  +   KL+  +       A+  GYI
Sbjct: 166 DHLCIGTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGYI 204


>gi|294627134|ref|ZP_06705722.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598567|gb|EFF42716.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 926

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 830 RALTIQALLERLNGDDDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 889

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 890 LYRKLDARSREGALAQALQRGLL 912


>gi|301029752|ref|ZP_07192806.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|299877440|gb|EFI85651.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|332342581|gb|AEE55915.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 190

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 130 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184


>gi|218889798|ref|YP_002438662.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218770021|emb|CAW25783.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 906

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
            ++  E   E     +++         G   P+         ++      +        A
Sbjct: 768 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 819

Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                ++     E   +    A   L+ RE + L+L   G +++EI+E+L +S+HTV ++
Sbjct: 820 CPGAQRMRALLPEPPAEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 879

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL    R QA+A+A   G +
Sbjct: 880 ARHINDKLGVERRTQAVARAKHMGLL 905


>gi|167034704|ref|YP_001669935.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861192|gb|ABY99599.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1]
          Length = 82

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 169 SAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             A     LT RE   L     G +S EI   L     TVN ++ +   K D   R+ A+
Sbjct: 11  PPADAPVRLTPRERQVLLWCAYGKSSWEIGRILDCKESTVNFHVSNILRKFDVPTRVVAV 70

Query: 226 AKAIRFGYI 234
            KAIR+G +
Sbjct: 71  IKAIRYGLL 79


>gi|152965318|ref|YP_001361102.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359835|gb|ABS02838.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 249

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 40/102 (39%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + + + ++ A+            +                +LT RE   L+    G ++ 
Sbjct: 138 VHSGDAVIAASSTRRLLQHVGPMLRAGAASPAAAAQGVPADLTPRELEVLECMAHGLSNG 197

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +  +S  TV  ++G    K  + +R+QA+  A   G +
Sbjct: 198 EIAARFVVSEATVKTHVGRVLAKTRSRDRVQAVVLAYAAGLV 239


>gi|261212443|ref|ZP_05926728.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341]
 gi|260838374|gb|EEX65030.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341]
          Length = 208

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 11/167 (6%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +    +    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALTHHE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEF---LMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGD 187
             + S+      L + +   A G  Y      + L     ++   +LT+RE     L   
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRSYLCADALVNLSNPDINNVLADLTKREVEVFDLLVQ 158

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G   +EIA+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 159 GKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|260204041|ref|ZP_05771532.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis K85]
 gi|289573466|ref|ZP_06453693.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis K85]
 gi|289537897|gb|EFD42475.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis K85]
          Length = 216

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    LP   +                    G+++  S  
Sbjct: 56  DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR 115

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++ +  A  L+ RE   L     G +   I
Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL   +R  A+A+A+R   +
Sbjct: 176 AAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215


>gi|239939692|ref|ZP_04691629.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986176|ref|ZP_04706840.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443118|ref|ZP_06582508.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346065|gb|EFE72969.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 216

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176
           L    +G+++  ++   + + V + A G       A  Q+ +++     + +     LT+
Sbjct: 96  LRAGADGFLLKRAKPSEIVHAVRLVAEGESLLFPVAVRQLASEYGTGRAREALDRAALTD 155

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE + L+L   G ++ EIA  L + + TV +++ S   KL A +R QA+  A   G++
Sbjct: 156 REAAVLRLMARGMSNAEIAADLVVGIQTVKSHVSSVLAKLGARDRTQAVIAAYESGFV 213


>gi|119471494|ref|ZP_01613935.1| putative transcriptional regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
 gi|119445593|gb|EAW26878.1| putative transcriptional regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
          Length = 218

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 142 ANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
             +++  A     Q   D L  L +        LT+RE + + L  +G  ++EIAE+L +
Sbjct: 123 RRDIMCNALNRMLQFNKDALHKLTEGDIEPV-KLTKREKAIISLMSNGSKNKEIAEELSI 181

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           S HTV  +L SA  K    NRI+ ++ A + 
Sbjct: 182 SPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|107103438|ref|ZP_01367356.1| hypothetical protein PaerPA_01004508 [Pseudomonas aeruginosa PACS2]
          Length = 906

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
            ++  E   E     +++         G   P+         ++      +        A
Sbjct: 768 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 819

Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                ++     E   +    A   L+ RE + L+L   G +++EI+E+L +S+HTV ++
Sbjct: 820 CPGAQRMRALLPEPPSEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 879

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL    R QA+A+A   G +
Sbjct: 880 ARHINDKLGVERRTQAVARAKHMGLL 905


>gi|88855696|ref|ZP_01130359.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88815020|gb|EAR24879.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 225

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                       + +  +     LT RE   L     G ++ EIA +L ++V TV  +L 
Sbjct: 135 RLLEAFAGQPSPVGEPIAQPTEPLTAREEEVLATVARGLSNSEIASELHITVSTVKTHLA 194

Query: 211 SATVKLDAVNRIQAIAK 227
           S   KL   NR++    
Sbjct: 195 SLMTKLGVRNRVEIAIW 211


>gi|99078159|ref|YP_611417.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035297|gb|ABF62155.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040]
          Length = 267

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 8/233 (3%)

Query: 10  KSSSLQELSPRLHLIQN-RIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
           ++ +L++                       +++          I +      +  +I   
Sbjct: 13  EAPTLEQKYRVFADFMEGEFGYVGVNYGIFLDARSAQAISNHFIAKRMGMSSEWREIYQK 72

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF--AGIAFPVRLG 125
                 D  +        PI+     +    +   +    +  G+  F   G+  PV   
Sbjct: 73  QGYGRRDLAMMMGAVTKRPILQTQFYQMQRQDDIPKPYAEVIEGVHDFVKCGVVLPVYAN 132

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCL 182
             K    ++  +     ++     +G   + +   L +    +    A   L+E     L
Sbjct: 133 GRKGVVGLYDPKGDAAKHDEKYRKYGTLIEALARHLHVSSSWAEETIAQTRLSEMNLRVL 192

Query: 183 QLAGDGYTSEEIAEKLGL-SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L   G   +EI  ++   +  TV+ ++      L A N ++A+AKA   G +
Sbjct: 193 RLKARGLRVKEILHQIERDNPKTVDNHMARVRRSLGARNDVEAVAKAATLGLL 245


>gi|320530995|ref|ZP_08032027.1| putative response regulator UvrY [Selenomonas artemidis F0399]
 gi|320136744|gb|EFW28694.1| putative response regulator UvrY [Selenomonas artemidis F0399]
          Length = 217

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAAR-----NLTERE 178
              GY+  TS    L + +   A              L     R   A       LTERE
Sbjct: 97  GAMGYLPKTSADDELFDALHALAEGRRYLSPNAQQSLLAAMFSRPGDAEEDPRARLTERE 156

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                    GYT  E AE+L LS  TV+ +      KL    R   +A AIR G +
Sbjct: 157 KEVFDRLIRGYTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHGLL 212


>gi|318605170|emb|CBY26668.1| putative two-component response regulator precursor [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 198

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 128 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 187

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 188 LADYAHTHNLV 198


>gi|192360065|ref|YP_001981449.1| two-component transcriptional regulator, LuxR family [Cellvibrio
           japonicus Ueda107]
 gi|190686230|gb|ACE83908.1| two-component transcriptional regulator, LuxR family [Cellvibrio
           japonicus Ueda107]
          Length = 312

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
           +R      P +G   P+ L     G  +     L+   E ++  H           E   
Sbjct: 192 LREWLSHKPESGRQLPLNLNSQGLGIEML---NLVDKREYLLRLHQRAQP------EDET 242

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +       +T RE   L+   +G T+ EI + L +S  TVN +L     KL   NR  A 
Sbjct: 243 QSLRQQFAVTGREADVLRWIANGKTNREIGQILDMSPRTVNKHLEQIFKKLGVENRTSAA 302

Query: 226 AKAIR 230
           A AI+
Sbjct: 303 AAAIK 307


>gi|149189578|ref|ZP_01867861.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Vibrio shilonii AK1]
 gi|148836557|gb|EDL53511.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Vibrio shilonii AK1]
          Length = 226

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             L+ RE   L+    G +++ IA KL +S  TV  ++ S   KL   +R++A   
Sbjct: 162 DVLSTREQEILKNIAIGLSNKMIANKLFISESTVKVHVKSILKKLQLRSRVEAAVW 217


>gi|21223170|ref|NP_628949.1| two-component system DNA-binding response regulator [Streptomyces
           coelicolor A3(2)]
 gi|8218193|emb|CAB92655.1| putative two-component system DNA-binding response regulator
           [Streptomyces coelicolor A3(2)]
          Length = 251

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 133 IRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 192

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 193 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 251


>gi|162418425|ref|YP_001606567.1| LuxR family DNA-binding response regulator [Yersinia pestis Angola]
 gi|162351240|gb|ABX85188.1| DNA-binding response regulator, LuxR family [Yersinia pestis
           Angola]
          Length = 210

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|329954461|ref|ZP_08295552.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
 gi|328527429|gb|EGF54426.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
          Length = 217

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              V        + R      LT RE   L+   +G  ++EIA++L +S +TV+ +    
Sbjct: 134 AEHVRAQMKRSDEGRR---EELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHL 190

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KLDA N    I  AI  G I
Sbjct: 191 MDKLDARNVADLIMTAISKGII 212


>gi|312961526|ref|ZP_07776027.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284205|gb|EFQ62785.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 215

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              L   +  AA  LTERE   L+    GY+++ I  KLG++  TV  ++ +   KL   
Sbjct: 139 AQALRSPQPHAAVELTERERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLR 198

Query: 220 NRIQAIAKAIRF 231
           +R++A   A+  
Sbjct: 199 SRVEAAVWAMEH 210


>gi|257054297|ref|YP_003132129.1| two component transcriptional regulator, LuxR family
           [Saccharomonospora viridis DSM 43017]
 gi|256584169|gb|ACU95302.1| two component transcriptional regulator, LuxR family
           [Saccharomonospora viridis DSM 43017]
          Length = 208

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  LT+RE   L+   DG T+ +IA +L L+  TV  YL +A  KL A NR +A   A  
Sbjct: 145 SDQLTDRERELLRQVADGATNRDIARRLHLAEGTVRNYLSAAMAKLGARNRTEAAKAARE 204

Query: 231 FGYI 234
            G+I
Sbjct: 205 RGWI 208


>gi|227875828|ref|ZP_03993954.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|306819109|ref|ZP_07452823.1| two component system response regulator [Mobiluncus mulieris ATCC
           35239]
 gi|227843576|gb|EEJ53759.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|304648085|gb|EFM45396.1| two component system response regulator [Mobiluncus mulieris ATCC
           35239]
          Length = 229

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 4/123 (3%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +  +         +        G              +  + 
Sbjct: 110 RAGARGYVTKTISTPDLVDSIIRVAEGDAAFSP----RLAGFVLDAFGATRSEIVETDNE 165

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   ++L   GY  +EIA +L +SV TV +++ +   KL   NR +    A  
Sbjct: 166 LDSLTSREFEVMRLIARGYAYKEIASELYISVKTVESHVSAVLRKLQLSNRYELSRWAAE 225

Query: 231 FGY 233
              
Sbjct: 226 RRI 228


>gi|196229776|ref|ZP_03128640.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226102|gb|EDY20608.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 212

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                     +   +    L+ RE   L+   +G   +EIA++L LS+ TV  Y+     
Sbjct: 136 HFFRQNEPAAEANGAVIEKLSARENEILRCLAEGRHYKEIADQLNLSMDTVRTYIRRTYE 195

Query: 215 KLDAVNRIQAIAK 227
           KL   +R +A+ K
Sbjct: 196 KLHVHSRTEAVVK 208


>gi|167590170|ref|ZP_02382558.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 243

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 12/230 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S  E   RL  + + +   +F    +   LD   R      L   + +   I       
Sbjct: 19  NSDSETLSRLKKVFSILGIPSFLF--VTFQLDNEARASDYRFLVGCNPEWIQIYQHRHWY 76

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D +L +  +   P     I    +  +  +  +         + +  P          
Sbjct: 77  SNDPYLQYGRTHTSPAPGSKIP---IASAGQREMIETARRYGLRSTLTLPAHARSTALIG 133

Query: 132 VIFTSEFLMLANE-VIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQL 184
           V+  S  +        +                     + ++ ++A   L ERE S L+L
Sbjct: 134 VLLASTDVDAEAGGEELLMRWRSLLRAAALELLDGRISINRRAAAAKYALDEREVSALRL 193

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                 ++E+A  +GLSV TV A       K       +A  +A R G +
Sbjct: 194 VLAAEPAQEVARTIGLSVATVYAMYSRINEKFGVPRINEAARRAERLGLL 243


>gi|220920519|ref|YP_002495820.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945125|gb|ACL55517.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 123

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +     LT RE   L L  +G +++ IA +LG+SVHT   ++GS   KLDA  R
Sbjct: 49  SAATPDAGPDVGLTPREIEVLSLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGR 108

Query: 222 IQAIAKAIRFGYI 234
             A+A A R G I
Sbjct: 109 TDAVAHAARRGVI 121


>gi|314934456|ref|ZP_07841815.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae
           C87]
 gi|313652386|gb|EFS16149.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae
           C87]
          Length = 220

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY +++IAEKL +SV TV A+      KL+  ++ + +  
Sbjct: 152 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEY 211

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 212 ALKKKLL 218


>gi|312962962|ref|ZP_07777448.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311282731|gb|EFQ61326.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 833

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            + I E       ++++     +  ++      L++RE   LQL   G ++ +IA++L +
Sbjct: 739 QQAIRELRLRAPGLLSELGMEPQASTAGVVENPLSQRELEVLQLIALGSSNLQIADRLFI 798

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           S+HTV  +      KL    R QA+AKA   G 
Sbjct: 799 SLHTVKTHARRIHSKLGVERRTQAVAKAKTLGL 831


>gi|303246240|ref|ZP_07332520.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492303|gb|EFL52175.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 218

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                +++    +     ++A  NLT RE   +++  +G T++E+AE L +SV T   + 
Sbjct: 133 QEVSRELLVGSPKAQAAPANAYDNLTAREREVMRMVVEGLTTKEVAEALAISVKTAEHHR 192

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL   N ++ +  A R G I
Sbjct: 193 CNLMRKLGLQNSVELVRYASRLGLI 217


>gi|291442824|ref|ZP_06582214.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291345771|gb|EFE72675.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G   ++I +F    K+ ++AA    LTERE   + L G G ++EEIA +L +S  T   +
Sbjct: 132 GVTRRLIAEFAARSKEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 191

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    VKL A +R Q +  A   G +
Sbjct: 192 VSRTMVKLGARDRAQLVVLAYESGLV 217


>gi|289641790|ref|ZP_06473948.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508434|gb|EFD29375.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 377

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 9/145 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
           I+W   +    I     L  RL             V     ++         + LA+   
Sbjct: 235 ILWAFAEGFGQIFERAVLLGRLRDQREQVRSAMQTV-----ESVLDDLAGAEIDLASRE- 288

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
              H            L   RSS   +LT RE   L L   G T+  IAEKL ++  TV 
Sbjct: 289 ---HATALAATRPARLLHTTRSSKMESLTGRELEVLTLMATGATNNRIAEKLVITNGTVK 345

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231
           +++     KL A NR +AI++ +R 
Sbjct: 346 SHVKRILRKLGAENRAEAISQYLRL 370


>gi|288916739|ref|ZP_06411113.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288351813|gb|EFC86016.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 225

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
            T+   +    +     LT+RE   +     G ++ EIA++L +   TV +++ S   KL
Sbjct: 139 FTERRPVSSTVARRVERLTDRERDVVVAVARGSSNSEIAKELFIGPATVKSHVSSILTKL 198

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R Q +  A   G +
Sbjct: 199 GLRDRAQVVVFAYESGLV 216


>gi|223042639|ref|ZP_03612688.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus capitis SK14]
 gi|222444302|gb|EEE50398.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus capitis SK14]
          Length = 218

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S   + L++RE   L L   GY +++IAEKL +SV TV A+      KL+  ++ + +  
Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEY 209

Query: 228 AIRFGYI 234
           A++   +
Sbjct: 210 ALKKKLL 216


>gi|167567132|ref|ZP_02360048.1| probable two-component response regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
          Length = 216

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   L+L  +G  + +IAEKL +++ TV  +  +   KLDA N  +    A R
Sbjct: 153 AVALTPRERQVLKLISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAELANWAHR 212

Query: 231 FGY 233
            G 
Sbjct: 213 LGL 215


>gi|239933385|ref|ZP_04690338.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291441749|ref|ZP_06581139.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291344644|gb|EFE71600.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 221

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  + +   LT+RE + L    +G ++ +IA ++ LS  TV  ++ +   KL+  +R+QA
Sbjct: 143 EDAARSLDPLTDRERAVLGFIAEGLSNTDIAARMHLSTGTVKDHVSAILTKLEVGSRVQA 202

Query: 225 IAKAIRFGYI 234
              A R G +
Sbjct: 203 ALLAERAGLL 212


>gi|227823159|ref|YP_002827131.1| putative two component transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227342160|gb|ACP26378.1| putative two component transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 213

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L K  +   + LT RET  L +  +G+++ +IA + G+S +TV  +L +   KL+  NR
Sbjct: 138 ALSKISNPPFQQLTARETELLGMLANGWSNTQIASRTGISENTVKYHLKNLYDKLEVRNR 197

Query: 222 IQAIA-KAIRF 231
             A+A  A   
Sbjct: 198 AMAVAIYAKER 208


>gi|220906824|ref|YP_002482135.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863435|gb|ACL43774.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 28/63 (44%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LT RE   L L   G ++ EIAE L +S  TV  ++     +L   +R QA   
Sbjct: 151 PPELAGLTPREREVLSLIVAGASNREIAEALYISERTVKNHISRILSQLHLRDRTQAAMF 210

Query: 228 AIR 230
           A R
Sbjct: 211 ASR 213


>gi|188026100|ref|ZP_02960869.2| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827]
 gi|188021614|gb|EDU59654.1| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827]
          Length = 225

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTERETSCL 182
                GY++  SE  ML N +   A  H    + +  +L    K +    +LT RE   L
Sbjct: 116 DAGAQGYLLKNSELDMLMNSMRKAAAGHHVFSEKVYQYLVNRHKINDPLSSLTRRECEIL 175

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                G  + EI++ L +S  TV  ++ +   KL+  +R++A
Sbjct: 176 HEMAAGLKNREISQLLFISEETVKVHIRNLLKKLNVRSRLEA 217


>gi|124022269|ref|YP_001016576.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962555|gb|ABM77311.1| possible DNA-binding response regulator [Prochlorococcus marinus
           str. MIT 9303]
          Length = 241

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 5/118 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNLTE 176
           +                 +LA    IE            V+        K SS   NL+ 
Sbjct: 114 IEAHCDGLCAHELVGSGTLLAALSAIESDGTYLDSVVAGVLRHGRLGNGKTSSQIDNLSL 173

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+    G +++ IA++L LS+ TV +++ +   KL A +R  A+  A R G +
Sbjct: 174 REGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAVVVAFRDGLV 231


>gi|326330233|ref|ZP_08196544.1| response regulator, two-component system [Nocardioidaceae bacterium
           Broad-1]
 gi|325952046|gb|EGD44075.1| response regulator, two-component system [Nocardioidaceae bacterium
           Broad-1]
          Length = 218

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 151 GACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                V    L  F  ++          LTERE   L L   G T+ EI+ +L +S+ TV
Sbjct: 127 LIAPNVTRRLLATFADQAPAVPVQPVDPLTEREEQVLALVARGRTNAEISTELFVSLSTV 186

Query: 206 NAYLGSATVKLDAVNRIQAIAKAI 229
             ++ S   KL   NR++    A 
Sbjct: 187 KTHVASLMTKLGTRNRVEIAMWAY 210


>gi|288918024|ref|ZP_06412382.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350542|gb|EFC84761.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 282

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                   V     +LF   +   R     L+ RE   L+L  +G ++ E A +L +S  
Sbjct: 191 ALRERIIAVRDLLEDLFPDTAPPTRAQPFGLSPRELDVLRLVAEGMSNAETARRLAVSPE 250

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV AYL S   KL   NR  A+  A R   +
Sbjct: 251 TVKAYLRSIMNKLGVHNRTAAVNVARRSSLL 281


>gi|229822282|ref|YP_002883808.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568195|gb|ACQ82046.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V    + L    +   + LT RE   L+L   GY++ EIAE L L+  TV  ++ 
Sbjct: 132 RVLRAVRAGSVPLDDAAAGDVQELTSRELEILRLLAAGYSNREIAEALHLAEGTVKNHVS 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +  +KL   +R +A+ +A+  G +
Sbjct: 192 TVLLKLGTRDRTRAVLRALHHGLL 215


>gi|167623909|ref|YP_001674203.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167353931|gb|ABZ76544.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 222

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT R+   LQL  +GY++ EIAE++ +S+ TV  +      +L+  +    +  AIR   
Sbjct: 154 LTSRQRQILQLIAEGYSTREIAERMSVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRCKL 213

Query: 234 IC 235
           IC
Sbjct: 214 IC 215


>gi|158315976|ref|YP_001508484.1| LuxR family GAF modulated transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111381|gb|ABW13578.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 285

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                   V     +LF   +   R     L+ RE   L+L  +G ++ E A +L +S  
Sbjct: 194 ALRERIVAVRDLLEDLFPDTAPPTRAQPFGLSPRELDVLRLVAEGMSNAETARRLAVSPE 253

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV AYL S   KL   NR  A+  A R   +
Sbjct: 254 TVKAYLRSIMNKLGVHNRTAAVNVARRSSLL 284


>gi|325923039|ref|ZP_08184737.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546480|gb|EGD17636.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 235

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      +  A +        H    V +        N+ +        
Sbjct: 86  AAGDSHEASWLMPPRPADMREAKVPIHALGTTHGMLCVAWNDSRPAPGNDDVQALQAFAL 145

Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E       ++R          L++RE   L L   G T+  +A +LG+S  TV
Sbjct: 146 LLPAMVAEPAKPLATRRRKPVQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++     KL+  +R QA   A+  G 
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVHAGL 233


>gi|254489762|ref|ZP_05102957.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010]
 gi|224464847|gb|EEF81101.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010]
          Length = 212

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
              E   K + A   LT+RE   L    +G  ++ IA KLG+S  TV  ++ +   KL+ 
Sbjct: 139 ALSEPDTKVNQADAGLTDRENEILDCLAEGMNNKNIARKLGISDTTVKVHIKNILRKLNL 198

Query: 219 VNRIQAIAK 227
            +R++A   
Sbjct: 199 TSRLEAAVW 207


>gi|114321300|ref|YP_742983.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227694|gb|ABI57493.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 264

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+R+    +L   G+++ +IA  L +S +TV  Y+          NR Q    A R G
Sbjct: 198 RLTKRQREVTELIAKGHSNYQIANHLQISENTVKLYVSQVLALTGVSNRTQLALLANRHG 257

Query: 233 YI 234
            +
Sbjct: 258 LL 259


>gi|332521837|ref|ZP_08398286.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332042509|gb|EGI78711.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 453

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              + L  E I E     ++      +  KK     + L+ RET  LQL   G T++EIA
Sbjct: 359 RADIDLHIEEIKELTATVHK-----QKSNKKEIETTQLLSFRETEILQLISLGKTNKEIA 413

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +L +S +TV  ++ +   KL+  +R +
Sbjct: 414 LELHISENTVKYHVKNIYTKLNIKSRKE 441


>gi|325977332|ref|YP_004287048.1| response regulator gacA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177260|emb|CBZ47304.1| Response regulator gacA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 227

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ E   +Q  G G +++EIA KL LS  TV  YL +   KL+  +R Q    A++ G
Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215


>gi|320547831|ref|ZP_08042115.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320447591|gb|EFW88350.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 227

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ E   +Q  G G +++EIA KL LS  TV  YL +   KL+  +R Q    A++ G
Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215


>gi|306830368|ref|ZP_07463538.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427393|gb|EFM30495.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 227

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ E   +Q  G G +++EIA KL LS  TV  YL +   KL+  +R Q    A++ G
Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215


>gi|288904336|ref|YP_003429557.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|288731061|emb|CBI12607.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
          Length = 227

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ E   +Q  G G +++EIA KL LS  TV  YL +   KL+  +R Q    A++ G
Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215


>gi|269958046|ref|YP_003327835.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306727|gb|ACZ32277.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 970

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 22/231 (9%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
           G  + SL     +L  + + +           +     R +    +L           + 
Sbjct: 756 GSSADSLSAARAKLLEVGDAL--------AEVAHTTAVRGRPRGGKLGPEGRAWLLRVDA 807

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
            +            +   P      +        G                A  +     
Sbjct: 808 ELARLR------AAASGAPADPARWEATVREFGFGYRYEEARSRF----RWAQALHAADD 857

Query: 128 KNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                      L  A       +  A     +     L    +R  +  +LT+RE   L 
Sbjct: 858 VEAATREAVTALAEADVMGAAPLAGAVREWARRARVALPGTPRRHESVASLTDREEEVLT 917

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G ++ +I E+L +S  TV+ ++ +   KL    R +A+  A R G +
Sbjct: 918 LVAEGLSNRQIGERLYISTKTVSVHVSNVLAKLGVSGRTEAVDVAHRKGLL 968


>gi|260597411|ref|YP_003209982.1| DNA-binding transcriptional regulator CsgD [Cronobacter turicensis
           z3032]
 gi|260216588|emb|CBA29849.1| Probable csgAB operon transcriptional regulatory protein
           [Cronobacter turicensis z3032]
          Length = 215

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   KL   NR QA+  A
Sbjct: 155 LTHREKEILNKLRFGASNMEIARSLFISENTVKTHLYNLFKKLAVKNRTQAVTWA 209


>gi|251797552|ref|YP_003012283.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
 gi|247545178|gb|ACT02197.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
          Length = 863

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + + +    LTE+ET  L+L G G  +++IA KL L   TV  YL     KL   +R Q
Sbjct: 791 SQPQPALIEPLTEQETFILRLLGQGAPNKQIAAKLALKEGTVKVYLSRIYAKLGVSSRTQ 850

Query: 224 AIAKAIRF-GY 233
           A+A A +  G 
Sbjct: 851 ALAAARQLDGL 861


>gi|126348513|emb|CAJ90237.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 220

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAAR---- 172
           L    +G+++  +    + + V + A G           L  +       R++ A     
Sbjct: 96  LRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRRLAARYGDGGGDRAARAESTRA 155

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA +L +   TV +++ +   KL A +R QA+  A   G
Sbjct: 156 RLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESG 215

Query: 233 YI 234
           ++
Sbjct: 216 FV 217


>gi|116050578|ref|YP_790603.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585799|gb|ABJ11814.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 268

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             +       N+A    + +                           +    D F     
Sbjct: 32  QTLGQFAPVDNWAALIFSDSSPLILSFMEEEIEEIEPDPLISRYITGLYL-QDPFYQVSR 90

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           +     ++      +    + +         +    + + V L   +   +         
Sbjct: 91  NCRRGGLFHLADIVSEDFETTEYYNAYFAHYVVTDEVQYNVPLDGERTLCLSL-GSESRF 149

Query: 142 ANEVIIEAHGACYQV---------ITDFLELFKKRSSAAR-----------NLTERETSC 181
             E I         V           D +    K  +AA             LT RE+  
Sbjct: 150 GAEQIALFELLRPWVIALMKKRIHFEDAVREEAKPIAAAEVEVQPWRGLISPLTARESDV 209

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           ++L  DGY+++EIA++L LS+ T+  +      KL+  +  +
Sbjct: 210 IRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLNVKSHSE 251


>gi|326383391|ref|ZP_08205078.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197797|gb|EGD54984.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 219

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG    +     ++  V                  G              +  +A   
Sbjct: 97  IKAGATGYLVKSAQRSELVAAVRATGDGQAVFTPGLAGLVLGEYRRIARSPGEADAAVPT 156

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RET  L+    G +S +IA +L +S  TV  ++G+A  KL   NR++    AI  G 
Sbjct: 157 LTQRETEVLRHVAKGLSSRQIATRLEISPRTVENHVGAALRKLQLGNRVELTRYAIEHGL 216


>gi|315123291|ref|YP_004065297.1| two-component system regulatory protein [Pseudoalteromonas sp.
           SM9913]
 gi|315017051|gb|ADT70388.1| two-component system regulatory protein [Pseudoalteromonas sp.
           SM9913]
          Length = 204

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L KK+ S    LT +E + LQ    G +++ IA+KL  S  T+  ++     KL+  +R 
Sbjct: 133 LLKKQLSPQLCLTGKEQTVLQCLSLGMSNKVIAKKLDNSEGTIRNHVSQILAKLEVKDRT 192

Query: 223 QAIAKAIRFGYI 234
           QA+ KAI    I
Sbjct: 193 QAVIKAINHNLI 204


>gi|298244586|ref|ZP_06968392.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297552067|gb|EFH85932.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 523

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S A +LT+RE   ++L   G  + +IA  L +S  TV  +L     K     R  A+A A
Sbjct: 458 SQATDLTQREIEVVRLLTQGQNTPQIARTLSISKKTVEHHLAHIYTKFGVSCRTAAVAYA 517

Query: 229 IRFGYI 234
           ++   +
Sbjct: 518 VQQNLV 523


>gi|256785730|ref|ZP_05524161.1| two-component system DNA-binding response regulator [Streptomyces
           lividans TK24]
 gi|289769622|ref|ZP_06529000.1| two-component system DNA-binding response regulator [Streptomyces
           lividans TK24]
 gi|289699821|gb|EFD67250.1| two-component system DNA-binding response regulator [Streptomyces
           lividans TK24]
          Length = 251

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 133 IRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 192

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 193 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 251


>gi|229818737|ref|YP_002880263.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564650|gb|ACQ78501.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 224

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 1/113 (0%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
                      +      +L  E +     A                +A   LTERE   
Sbjct: 109 AHPDRIVEAIRVVARGDAVLFPEAVRRLVAASP-AGATPSPADGPHGAAIGRLTEREEEV 167

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G T+ EIA +L L V TV  ++G+   KL A +R+QA   A   G++
Sbjct: 168 LRLVAAGMTNAEIAAQLWLGVETVKTHVGNVLAKLGARDRLQAAIVAYESGFV 220


>gi|169634637|ref|YP_001708373.1| response regulator [Acinetobacter baumannii SDF]
 gi|169797497|ref|YP_001715290.1| response regulator [Acinetobacter baumannii AYE]
 gi|184156579|ref|YP_001844918.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213155689|ref|YP_002317734.1| response regulator [Acinetobacter baumannii AB0057]
 gi|215484933|ref|YP_002327172.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|260551084|ref|ZP_05825288.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260556389|ref|ZP_05828608.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|301346538|ref|ZP_07227279.1| response regulator [Acinetobacter baumannii AB056]
 gi|301512072|ref|ZP_07237309.1| response regulator [Acinetobacter baumannii AB058]
 gi|301594838|ref|ZP_07239846.1| response regulator [Acinetobacter baumannii AB059]
 gi|169150424|emb|CAM88321.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Acinetobacter baumannii AYE]
 gi|169153429|emb|CAP02566.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Acinetobacter baumannii]
 gi|183208173|gb|ACC55571.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Acinetobacter baumannii ACICU]
 gi|193076104|gb|ABO10711.2| response regulator [Acinetobacter baumannii ATCC 17978]
 gi|213054849|gb|ACJ39751.1| response regulator [Acinetobacter baumannii AB0057]
 gi|213987818|gb|ACJ58117.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|260405851|gb|EEW99339.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260410444|gb|EEX03743.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|322506466|gb|ADX01920.1| gacA [Acinetobacter baumannii 1656-2]
 gi|323516345|gb|ADX90726.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 211

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S   +L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 198 KLTHLAIRYGLI 209


>gi|11344597|gb|AAG34369.1|AF197465_1 nitrate/nitrite response regulator [Pseudomonas fluorescens]
          Length = 215

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+   L    +++     LTERE   L+    GY+++ I  KLG++  TV  ++ +   
Sbjct: 136 RVMAQALRSPPRQADV--ELTERERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLH 193

Query: 215 KLDAVNRIQAIAKAIRF 231
           KL   +R++A   A+  
Sbjct: 194 KLGLRSRVEAAVWAMEH 210


>gi|15614686|ref|NP_242989.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174742|dbj|BAB05842.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 223

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +ERE     L   G T+++IAEKL ++  TV  Y+     K+   +R+QA       G 
Sbjct: 163 SERERQIASLLAQGLTNKKIAEKLYITEGTVKNYISEIYSKIGIRDRMQASTYLRELGI 221


>gi|254242610|ref|ZP_04935932.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192]
 gi|126195988|gb|EAZ60051.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192]
          Length = 906

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
            ++  E   E     +++         G   P+         ++      +        A
Sbjct: 768 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 819

Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                ++     E   +    A   L+ RE + L+L   G +++EI+E+L +S+HTV ++
Sbjct: 820 CPGAQRMRALLPEPPAEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 879

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL    R QA+A+A   G +
Sbjct: 880 ARHINDKLGVERRTQAVARAKHMGLL 905


>gi|311896491|dbj|BAJ28899.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 18/160 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138
           +          ++  R  G       +A  V         VI                  
Sbjct: 67  LDVHLPGGGGVEVLRRSAGADGVR-FLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLV 125

Query: 139 ----LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                +   + +     A + +                 LT+RE   L+L   GY  +EI
Sbjct: 126 KAIFRIADGDAVFSPRLAGFVLDAFAATDTPPVDEDLDRLTQREREVLRLIARGYAYKEI 185

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 186 AKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 225


>gi|317133287|ref|YP_004092601.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315471266|gb|ADU27870.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 784

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 143 NEVIIEAHGACYQVITDFL---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
              +   H     V    +      K   + +  L+  ET  L+L  +  +++EI E L 
Sbjct: 690 ACDMEYLHRLTAAVRAQAVLYPRFLKPLPAPSEPLSAAETQVLRLLCENLSNQEIGEILD 749

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + + TV  ++     KL    R +A   A +   I
Sbjct: 750 IKLATVKTHVSHILQKLGVSRRSEAKDAAEKLHLI 784


>gi|253687761|ref|YP_003016951.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754339|gb|ACT12415.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 218

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 11/160 (6%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--- 142
           PI    I      ES   L  RL      F  I   +          +       L    
Sbjct: 56  PIDVAVIDIAMPDESGLSLLTRLRQQRPQFRAIILSIYDTTAFVQSALDAGAGGYLTKRC 115

Query: 143 -NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194
             E +++A                  +  ++        LT RE     L  +G + + I
Sbjct: 116 GPEELVQAVRVVSSGGIYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+L LS  TV+ +  +   KL   + ++ +  A++   +
Sbjct: 176 AEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 215


>gi|228911192|ref|ZP_04074997.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848368|gb|EEM93217.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 189

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NR
Sbjct: 117 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 176

Query: 222 IQAIAKAIRFGYI 234
           I+AI  A   G++
Sbjct: 177 IEAITIAEEKGWV 189


>gi|189460662|ref|ZP_03009447.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136]
 gi|189432621|gb|EDV01606.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136]
          Length = 250

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 36/77 (46%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            D   +       +  L+ RE   L L G G +S+EIAE+L LS+HTV+ +  +   KL 
Sbjct: 174 ADGSRIDIDTYDCSDLLSRREKEILILIGRGKSSKEIAEELSLSIHTVSRHRQNILQKLQ 233

Query: 218 AVNRIQAIAKAIRFGYI 234
             N  QA   A     +
Sbjct: 234 VSNSAQAFGIARELHLL 250


>gi|158339380|ref|YP_001520557.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309621|gb|ABW31238.1| transcriptional regulator, LuxR family, putative [Acaryochloris
           marina MBIC11017]
          Length = 149

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 7/139 (5%)

Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVIT 158
             +L  R          +  PV       G + F             +      C    T
Sbjct: 10  QSELYQRCCSTYDHEHIMTGPVLGQGQLIGTINFARVGHGPAFNQFDLSRFGAVCTHFST 69

Query: 159 DFLELFK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
              EL K      +   ++LT RE     L   G T+ EI   L +S +TV   L     
Sbjct: 70  RLAELRKHSVADSNPYWQSLTPRERQIANLVAQGLTNPEIGAALWISRNTVKQALKRMFR 129

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL+  +R++ + K +R G 
Sbjct: 130 KLEVSSRMEMVLK-LRDGL 147


>gi|118466851|ref|YP_883258.1| DevR family transcriptional regulator [Mycobacterium avium 104]
 gi|254776535|ref|ZP_05218051.1| two component transcriptional regulatory protein devr
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118168138|gb|ABK69035.1| two component transcriptional regulatory protein devr
           [Mycobacterium avium 104]
          Length = 222

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   +   L     ++     LTE+E + L L  +G T+ +IA ++ L+  TV  Y
Sbjct: 125 LDNRAAAALMAKLRGSAAQADPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNY 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           +     KL    R QA   A + 
Sbjct: 185 VSRLLAKLGMERRTQAAVFASKL 207


>gi|34452032|gb|AAQ72483.1| DNA binding response regulator [Bacillus cereus]
          Length = 200

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|24375469|ref|NP_719512.1| DNA-binding nitrate/nitrite response regulator [Shewanella
           oneidensis MR-1]
 gi|24350319|gb|AAN56956.1|AE015828_12 DNA-binding nitrate/nitrite response regulator [Shewanella
           oneidensis MR-1]
          Length = 209

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153
              +    +    +   V         ++              +++++        H   
Sbjct: 69  LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLDKLKNTMSGHRVI 128

Query: 154 YQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            + + ++L   K  +       +LT RE   LQ   +G ++  I+E L +S  TV  ++ 
Sbjct: 129 SEEVAEYLYELKNAADEQEWVSSLTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|300782912|ref|YP_003763203.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792426|gb|ADJ42801.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 214

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRS---SAAR 172
           +    +     GY++  +E   +   V   A         +    L  F +         
Sbjct: 91  SVFAAMRAGARGYLLKDAEPDEIIRAVRAVARREAIFGPDIANRVLAFFNQPPVSEPVFP 150

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L   G+++  IA  L LS  TV  ++ +   KL   +R +AI +A   G
Sbjct: 151 ELTGREREVLALIAAGHSNSLIASTLCLSPKTVRNHISNVFAKLHVADRAEAIVRARDAG 210

Query: 233 Y 233
            
Sbjct: 211 L 211


>gi|294677360|ref|YP_003577975.1| LuxR family autoinducer-binding transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294476180|gb|ADE85568.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacter capsulatus SB 1003]
          Length = 250

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 66/228 (28%), Gaps = 13/228 (5%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQ----QLICELHNYDLDSGDIPNILI 69
             +++    +   ++    F             +          L N+D    +      
Sbjct: 11  ADDVATIWSMHCAQMAKFGFDRLIYGFTRFRATQNLGSLDDTLILSNHDPAYLNSFLGAG 70

Query: 70  ETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-- 124
                  +      +    W+          +    +  + L       AG +       
Sbjct: 71  LFSEAPMVKWALDSVGACSWRVVAERMAAGELTEGERRVIDLNRRFQVLAGYSIGFPDTS 130

Query: 125 -GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETS 180
                   +           + I E HG   +V+   + L           R LT R+  
Sbjct: 131 ARAKGAIGLCAQPGLTQADVDAIWEEHGRDLRVLNSIMHLKISALPFSTTRRPLTSRQRE 190

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            L+  GDG TS +IA+ LG +  TV  +L  A   L+     QA+ KA
Sbjct: 191 VLEWVGDGKTSADIAQILGPTTATVEKHLRLAREALEVETTAQALLKA 238


>gi|302547140|ref|ZP_07299482.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464758|gb|EFL27851.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 178

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 38/105 (36%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V     +   V            V     GA  +     L            LT RE+  
Sbjct: 69  VHCDDPEEELVEAVRRASDGTGYVSPGLSGALLRFTRAMLPRHLSAVPTHAPLTSRESEV 128

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LQL   G  ++EIA +LGLS  TV  ++ +   K    +R Q IA
Sbjct: 129 LQLVRKGMANKEIARRLGLSEKTVKFHVSNVLAKAHVASRAQLIA 173


>gi|309791843|ref|ZP_07686330.1| TPR repeat-containing transcriptional regulator LuxR
           [Oscillochloris trichoides DG6]
 gi|308226165|gb|EFO79906.1| TPR repeat-containing transcriptional regulator LuxR
           [Oscillochloris trichoides DG6]
          Length = 907

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 45/94 (47%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
                +++A            ++  + +     LT RE   + L   G +++EIAE++ +
Sbjct: 813 PHERPLLDAIDRILAACPAKPQVRMQPTHLIEPLTPRELEVIGLVAAGLSNQEIAERMVV 872

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            V TV  ++ +   KLD ++R QA+ KA  FG I
Sbjct: 873 GVSTVKKHINNIYGKLDVLSRTQALKKAREFGLI 906


>gi|297624881|ref|YP_003706315.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297166061|gb|ADI15772.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 227

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQ 183
             G     S    +     +        V+ +F        +        LTERE + L+
Sbjct: 111 DAGADDLISAIRRVDEGETLLRAELAASVLDEFSRAKSETPEHPEHRLSELTEREATILR 170

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L   G +++EIA  LG+S  TV   L     KL   NR QA   A+R G 
Sbjct: 171 LLAQGASNQEIAVSLGVSEKTVRNRLSEIFSKLRLNNRTQAALYALREGI 220


>gi|302540281|ref|ZP_07292623.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457899|gb|EFL20992.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 239

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 32/64 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + R  A   L+ RE   L L G+G T+ +I ++L LS  TV  ++     KL    RIQA
Sbjct: 159 EPRDEALAGLSPREREILALIGEGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQA 218

Query: 225 IAKA 228
              A
Sbjct: 219 AVLA 222


>gi|254522250|ref|ZP_05134305.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219719841|gb|EED38366.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 217

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RET  L+    G +++ I E++ +S  TV A++ S   KL   +R  A+ +A+R 
Sbjct: 147 DRLSPRETEVLRHVASGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRR 206

Query: 232 GYI 234
           G I
Sbjct: 207 GII 209


>gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 225

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT  E   +Q    G  + EIAE+L +S  TV +++ +   K +  NR +    AI  
Sbjct: 164 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222


>gi|300788334|ref|YP_003768625.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797848|gb|ADJ48223.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 225

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 129 NGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
            G         ++A  +         +++                +LT RE   L   G 
Sbjct: 113 AGIRAVAGGDAVIAPALTRRLLDTYGHRLPDGGATPTPPADPRWESLTAREQDILVAIGQ 172

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           G+T+ EIAE+L LS  TV  ++G    K+ A +RIQA+  A   G 
Sbjct: 173 GWTNGEIAERLVLSESTVKTHVGRVLAKIGARDRIQAVILAYDLGL 218


>gi|298250577|ref|ZP_06974381.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548581|gb|EFH82448.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1102

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 156  VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
             ++   +     S+   +LT RE   L L   G ++++IA+ L +S+ TV  ++ +   K
Sbjct: 1024 ALSSARQPSVISSAPGISLTRREQEVLSLLAAGASNQDIAQALVISLDTVKKHVSNLFGK 1083

Query: 216  LDAVNRIQAIAKAIRFGYI 234
            L A NR QA+A A     +
Sbjct: 1084 LGAGNRTQAVALARARSLL 1102


>gi|227329373|ref|ZP_03833397.1| two-component system response regulator protein [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 209

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 11/160 (6%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--- 142
           PI    I      ES   L +RL      F  I   +          +       L    
Sbjct: 47  PIDVAVIDIAMPDESGLSLLIRLRQQRPNFRAIILSIYDTTAFVQSALDAGAGGYLTKRC 106

Query: 143 -NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194
             E +++A     +            +  ++        LT RE     L  +G + + I
Sbjct: 107 GPEELVQAVRVVSRGGLYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+L LS  TV+ +  +   KL   + ++ +  A++   +
Sbjct: 167 AEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206


>gi|29347298|ref|NP_810801.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572832|ref|ZP_04850231.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|29339197|gb|AAO76995.1| transcriptional regulator, LuxR family [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837564|gb|EES65656.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 258

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G  S+EIA+KL +S+HTVN +  +   KL   N I+AI      G
Sbjct: 196 PLTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQNSIEAIRIGYETG 255

Query: 233 YI 234
            +
Sbjct: 256 IL 257


>gi|311897945|dbj|BAJ30353.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 338

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 4   NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63
           +    +  +SL ++  RL  + +   A       +  A   P+   ++      D ++ +
Sbjct: 115 DQRGLELLASLDQVRDRLIQLASDATAE-----VLAFAPGGPQPAPVMEASRALDQETLE 169

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
               +   Y D       +    + +               ++ L   ++  A    P+ 
Sbjct: 170 RGVRMRTVYQDSV----RNDPATVQYARWLHGLGGAVRTTPTLPLRMIVVDNATAIVPID 225

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               + G  +  S  ++ A   + +      QV      L +      R LT +E   L+
Sbjct: 226 PDDPRKGAALLQSPGVVAALRALFD------QVWEHARPLGESPQRDPRGLTGQERELLR 279

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G T E   ++LG+S+ TV   +    +++DA +R QA  +    G++
Sbjct: 280 LLAEGLTDERAGQRLGVSLRTVRRMMADLMIRMDARSRFQAGIQVAALGWL 330


>gi|298241309|ref|ZP_06965116.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554363|gb|EFH88227.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L L     T+ EI E+L LS  TV  ++ +   KL    R QAI +A   G
Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLALSPKTVRNHVSNIFSKLQVATRAQAIIRAREAG 217

Query: 233 Y 233
           +
Sbjct: 218 W 218


>gi|298248918|ref|ZP_06972722.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297546922|gb|EFH80789.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 788

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+R+   L+L  +G T +EIAE+L +S  TVNA+L     K+    R  A   A+  
Sbjct: 726 DQLTQRQVEILRLLAEGLTDKEIAERLCISPRTVNAHLNKIYPKIHVSTRSAATRYAVER 785

Query: 232 GYI 234
             I
Sbjct: 786 KLI 788


>gi|288962660|ref|YP_003452954.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914926|dbj|BAI76410.1| two-component response regulator [Azospirillum sp. B510]
          Length = 229

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 54/173 (31%), Gaps = 17/173 (9%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                  LP +      +        L   +         +   V          I    
Sbjct: 54  RAACERFLPTVL-ITDLQLPDGHGTDLIREVRDRFPATEIMVISVLGDEDSVVTAIRAGA 112

Query: 138 FL----MLANEVIIEAHG------------ACYQVITDFLELFKKRSSAARNLTERETSC 181
                       ++EA                  +I    +   K    A  LT RET  
Sbjct: 113 SGYILKDSEPVDMVEAVRGLIEGRSPISASIARYIIRRVQDGSFKDRKPAPLLTPRETDI 172

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G+T  +IA++LGLS  TV +Y+ +   KL+  +R +A+ +AI    I
Sbjct: 173 LWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKLI 225


>gi|238897394|ref|YP_002923071.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465149|gb|ACQ66923.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 210

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G ++  IA++L +S  TV  +  +   KLD     Q I  + R G 
Sbjct: 149 LTSRERQILKLITEGVSNRIIADRLYISEKTVETHRLNMMKKLDVHKVAQLIQWSQRLGI 208


>gi|229492666|ref|ZP_04386467.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121]
 gi|229320325|gb|EEN86145.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121]
          Length = 285

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 71/208 (34%), Gaps = 8/208 (3%)

Query: 30  ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS---GLLP 86
           A  FA   I  A D   R + I  L    L     P +LI       +   +       P
Sbjct: 82  ADYFAAEGITHAYDHAVRPEAIQTLAALPLIVDRTPRVLIYLAARTHVRLGDRWFDSFTP 141

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
           ++ + ++ +  +E      + L              R   H     +      +    + 
Sbjct: 142 LV-RRLERDIAVEDEVGRRLNLIRANAEAEQATLT-RTDIHDIAMELADLADHITDATLR 199

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                   +       L     +    L  RE   L+    G ++ EIAE LGL  +TV 
Sbjct: 200 ARIEAVGNRFAPI---LTPHSLAPPTLLRPREIEVLEHVARGSSNREIAEALGLLPNTVK 256

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +YL SA  KL A NRIQA+  A   G +
Sbjct: 257 SYLKSAMRKLHANNRIQAVLAARELGVL 284


>gi|262204346|ref|YP_003275554.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087693|gb|ACY23661.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 213

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
              A   +++       +          R +    LTERE   + L  +G ++++IA +L
Sbjct: 118 SAAAGRSLLDEKALRALMSRGRSADDPPRRTPPDGLTEREVEVIALIAEGLSNQQIATRL 177

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +S+ TV  ++     K    +R   ++ A R   
Sbjct: 178 VVSLSTVKTHINHILAKTACRDRAALVSYAFRHHL 212


>gi|218289695|ref|ZP_03493903.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512532|ref|YP_003185966.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218240152|gb|EED07336.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257479258|gb|ACV59577.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 221

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARN----LTE 176
               +GY++  +    L    I EAH        QV+   L   ++ +  +      LT 
Sbjct: 100 RAGVSGYIVKDAPMEDL-LRAIREAHEGRAMVHPQVMRAVLGEIERYAKPSDGWKDLLTA 158

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L     G ++E+IAE L +++ T   ++     KL+  +R QA+  A R  +I
Sbjct: 159 REFDVLCQMAAGKSNEQIAESLHITLKTAKNHVSHILAKLNVSDRSQAVLHAYRERWI 216


>gi|146283498|ref|YP_001173651.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145571703|gb|ABP80809.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 872

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+L   G +++EIAE+L +S+HTV  +      KL    R QA+AKA    +
Sbjct: 812 LSNRELTVLRLIAQGCSNQEIAEQLFISLHTVKTHARRINTKLGVARRTQAVAKAKALAW 871

Query: 234 I 234
           +
Sbjct: 872 L 872


>gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 245

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L++   G ++ EI  +L LS  TV  Y+ S   K    NR + +  AI  G
Sbjct: 183 SLTPREQEVLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHG 242

Query: 233 YI 234
            +
Sbjct: 243 LV 244


>gi|70725661|ref|YP_252575.1| hypothetical protein SH0660 [Staphylococcus haemolyticus JCSC1435]
 gi|123748665|sp|Q4L8Q6|NREC_STAHJ RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|68446385|dbj|BAE03969.1| nreC [Staphylococcus haemolyticus JCSC1435]
          Length = 217

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + L++RE   L L   GY +++IAEKL +SV TV A+      KLD  ++ + +  A+
Sbjct: 151 PFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLDLKSKPELVEYAL 210

Query: 230 RFGYI 234
           +   +
Sbjct: 211 KKKLL 215


>gi|110637079|ref|YP_677286.1| fimbrial Z protein; signal transducer [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279760|gb|ABG57946.1| fimbrial Z protein; probable signal transducer [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 212

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++RE   L+    G ++E+IA+ L +S  T+  +  +   K       + I  A+    +
Sbjct: 150 SDRELEVLRYICKGRSNEQIADILFISEKTIATHRRNIMKKAGVKKSTELIVWALDNKIV 209


>gi|328884518|emb|CCA57757.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 236

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 118 IRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDMDRLT 177

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 178 QREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 236


>gi|319945594|ref|ZP_08019846.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319748193|gb|EFW00435.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 199

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           +++   H           EL +   +    L+ +E + L+    G +++EIA++L LS  
Sbjct: 109 DLMRTLHTVLAGQKEYSPELMEGILAHPNPLSSQEQAVLKEVAKGASNQEIADRLFLSNG 168

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+  Y+     KLDA NR +A   A   G++
Sbjct: 169 TIRNYMSGILTKLDAENRTEAAKIAQEKGWL 199


>gi|300114081|ref|YP_003760656.1| LuxR family two component transcriptional regulator [Nitrosococcus
           watsonii C-113]
 gi|299540018|gb|ADJ28335.1| two component transcriptional regulator, LuxR family [Nitrosococcus
           watsonii C-113]
          Length = 209

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +   +   L     S    LT RE    +L   G  ++ IA +L +S+ TV  +  +  
Sbjct: 126 QETHKEQSRLQPGNLSQFEFLTRRERQVFKLLAQGKMNKHIAAELCISIRTVETHRANVM 185

Query: 214 VKLDAVNRIQAIAKAI 229
            KL A +    +  AI
Sbjct: 186 EKLKAKSLADIVRLAI 201


>gi|296120127|ref|ZP_06838681.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967281|gb|EFG80552.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 228

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 28/72 (38%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E           LT RE   L+L   GYT  EI ++L +S+ TV  +  +   K    NR
Sbjct: 156 EPEPISDPVVDALTRRELEVLRLLARGYTYREIGQELFISIKTVETHASNILRKTQQSNR 215

Query: 222 IQAIAKAIRFGY 233
            Q    A     
Sbjct: 216 YQLTRWAADRDL 227


>gi|311742180|ref|ZP_07715990.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
 gi|311314673|gb|EFQ84580.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
          Length = 899

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L         +LT RE+  L+    G ++ +IA  LG+S  TV+ ++ +   KL   +R 
Sbjct: 828 LQIDLDDPDPHLTPRESEVLRWVSTGASNRQIARTLGISEGTVSVHVSNLLRKLGVGSRT 887

Query: 223 QAIAKAIR 230
           +A  +A R
Sbjct: 888 EAAVRAAR 895


>gi|228940289|ref|ZP_04102860.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973205|ref|ZP_04133794.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982224|ref|ZP_04142510.1| Two-component protein Kinase [Bacillus thuringiensis Bt407]
 gi|228777511|gb|EEM25792.1| Two-component protein Kinase [Bacillus thuringiensis Bt407]
 gi|228786401|gb|EEM34391.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819415|gb|EEM65469.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 592

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|15608030|ref|NP_215405.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           H37Rv]
 gi|6137301|sp|Q10550|Y890_MYCTU RecName: Full=Putative HTH-type transcriptional regulator
           Rv0890c/MT0914
 gi|3261566|emb|CAA97404.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
          Length = 882

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190
                E    A                      +KR +    +LT  E   ++L  +G +
Sbjct: 778 EAMGDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLS 837

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +++IA++L +S  TV  +L     KL   +R+Q + +A R G
Sbjct: 838 NKDIAKRLFVSPRTVQTHLTHVYAKLGLPSRVQLVDEAARRG 879


>gi|312959040|ref|ZP_07773559.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311286810|gb|EFQ65372.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 909

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 71/223 (31%), Gaps = 19/223 (8%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +       + A     +A +F         L    LD+            ++   
Sbjct: 698 AWLTRLGQTYNGEHAA-----AAPEFHPHLPQHIGLQQAALDAVRHQPEAALQRLEELAQ 752

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
           H +     +I      +                +L  A       L     G +      
Sbjct: 753 HAHHCGRQMIALLALTQLAQLLLLGGQEAKARPVLARA-------LEAGAGGALQPFQRL 805

Query: 139 LMLANEVIIEA-----HGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTS 191
           L    + + E       G   Q +   L   ++   S     L+ RE + LQL  +G ++
Sbjct: 806 LDGHPDWMREQLSKDPQGLLNQSLLALLPAAEQIGTSPVHETLSVRELAVLQLIAEGCSN 865

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EI+ +L +S+HTV  +      KL    R QA+A+A     I
Sbjct: 866 QEISNRLFISLHTVKTHASHINSKLGVERRTQAVARAQELRLI 908


>gi|256376044|ref|YP_003099704.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920347|gb|ACU35858.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  + T+   + + + +++A       + + +   +++    R LTE+E + L L G G 
Sbjct: 109 GTDLCTAVRTVASGQSLLDA--RSTSALLNRIRREREQGDPIRMLTEQERTVLDLIGQGM 166

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           T+ +IAE + L+  TV  Y+     KL    R QA   A + 
Sbjct: 167 TNRQIAESMFLAEKTVKNYVSHLLAKLGLERRTQAAVLASKL 208


>gi|27365565|ref|NP_761093.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37680289|ref|NP_934898.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320155960|ref|YP_004188339.1| DNA-binding response regulator, LuxR family [Vibrio vulnificus
           MO6-24/O]
 gi|13641466|gb|AAK31574.1| transcriptional regulator [Vibrio vulnificus]
 gi|27361713|gb|AAO10620.1| Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37199036|dbj|BAC94869.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319931272|gb|ADV86136.1| DNA-binding response regulator, LuxR family [Vibrio vulnificus
           MO6-24/O]
          Length = 212

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +     L+ RE + L+L   G++S++IA  L +S  TV  +  +   KLD  +  +  
Sbjct: 143 PAAQRPNPLSRREEAVLKLVAQGHSSKKIATLLEISYRTVETHRHNIKHKLDLNSTAELA 202

Query: 226 AKAIRFGYI 234
             A+  G I
Sbjct: 203 KYALEQGLI 211


>gi|329961013|ref|ZP_08299292.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328532299|gb|EGF59103.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 220

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
             C       L      S A        LT  E S L+    G T++EIA    LS HTV
Sbjct: 125 FICNHASNLLLSGRNASSPAHPAIKDNLLTPAERSILKEIALGKTTKEIAADRNLSFHTV 184

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           N++  +   KL   N  +A   A++ G +
Sbjct: 185 NSHRKNIFRKLGVNNAHEATKYAMKAGIV 213


>gi|325677563|ref|ZP_08157226.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325551634|gb|EGD21333.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 206

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +  +     + LT RE   L L  +G T++E+ ++L +S  TV  +L     KL   +R
Sbjct: 133 RVLDRMRRPDQALTAREAELLSLLAEGLTNKELGKRLFISEATVKTHLAHIYAKLGVDSR 192

Query: 222 IQAIAKAIRF 231
             A++ A+R 
Sbjct: 193 AAAVSIALRR 202


>gi|300087378|ref|YP_003757900.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527111|gb|ADJ25579.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 247

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              A   ++ +  +   +R++ A +LT RE   L+L G+G +++EI+  L +++ TV  +
Sbjct: 146 LRAAVENLLQNGRKTLAERTAEAAHLTAREVDVLRLMGNGDSNKEISSSLNITLDTVKKH 205

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   KL A +R  A   A + G 
Sbjct: 206 IRNVIDKLQARSRTHASIIAAQAGI 230


>gi|302544568|ref|ZP_07296910.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462186|gb|EFL25279.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 240

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ A   + E       ++    L+ F    +         LT
Sbjct: 122 IRGGARGYVTKTITGTDLVDAIFRVSEGDAVFSPRLAGFVLDAFASTDAPPVDEDMDRLT 181

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 182 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 240


>gi|226948658|ref|YP_002803749.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226842846|gb|ACO85512.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 217

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     S   NLTERE + ++   +G +++EIAE++ LS  T+   + +   KLD  +R
Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDR 203

Query: 222 IQAIAKAIRFGYI 234
            Q    A +   +
Sbjct: 204 TQIAIFAFKNNIV 216


>gi|223936934|ref|ZP_03628843.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894503|gb|EEF60955.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 226

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +++                L+ RE   L L  +G +++EI  KL +S  TV  +L    
Sbjct: 145 ARMVVRSFIADTPEKDETGQLSGREQEILALLAEGLSNKEIGSKLNISFTTVRTHLMHIY 204

Query: 214 VKLDAVNRIQAIAKAIR 230
            KL    R +A AK +R
Sbjct: 205 EKLHVRCRTEAAAKYLR 221


>gi|171914768|ref|ZP_02930238.1| DNA-binding response regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 212

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             +QV+  F     +   A   L+ RE   L+L   G+  +EIA++L LS+HTV+ YL  
Sbjct: 132 IAHQVLELFSRFAPRH--ADYGLSTRERETLELMVQGFIRKEIADRLNLSLHTVDTYLRG 189

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+   R  A+AKA++ G +
Sbjct: 190 VYRKLEVNTRTGAVAKALKEGLV 212


>gi|29830997|ref|NP_825631.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608111|dbj|BAC72166.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 216

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS---AARN 173
           L    +G+++       L + V + A G          ++I D+    ++ +        
Sbjct: 94  LHAGASGFLLKDVRRDDLVHAVRVVAAGESLVAPSVARRLIADYTRRGRRTAPVSGRLDV 153

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L     G ++ EIA  + +S HTV  ++G+   KL   +R+QA+  A   G 
Sbjct: 154 LTARERETLLHLAHGLSNAEIAAAMVVSEHTVKTHVGNVLSKLALRDRVQAVICAYETGL 213

Query: 234 I 234
           +
Sbjct: 214 V 214


>gi|86357364|ref|YP_469256.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281466|gb|ABC90529.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 207

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT RE   + L   G +++ I  +L L   TV  ++     KL A NR +A  +    
Sbjct: 148 SLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGASNRTEAALQWRER 206


>gi|331694595|ref|YP_004330834.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|331696119|ref|YP_004332358.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949284|gb|AEA22981.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950808|gb|AEA24505.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 214

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
             V+                L+ +E   L L  DG T+++I  +L L+  TV  Y+ S  
Sbjct: 133 ASVLERLRRGEDTEDPRYAGLSPQERRILDLVADGLTNKQIGAELFLAEKTVKNYVSSLL 192

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL    R +A   A R 
Sbjct: 193 HKLGFSRRTEAAVYAERR 210


>gi|326940929|gb|AEA16825.1| two-component protein kinase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 595

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 508 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 568 YASTAYTKLGVRNKEEAVQKALEIGII 594


>gi|311897337|dbj|BAJ29745.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L G+G ++ EIA++L L   TV  ++ +   KL A NR+QA   A R G
Sbjct: 154 RLTGRELDVLALLGEGLSNAEIADRLFLGTGTVKDHISAILGKLGAANRVQAAVIAHRAG 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|313109354|ref|ZP_07795317.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310881819|gb|EFQ40413.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 875

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
            ++  E   E     +++         G   P+         ++      +        A
Sbjct: 737 AALHLEQGREREALATLQQAME-GAVGGALLPLHE-------LLVQQPEWLREQLQRFPA 788

Query: 150 HGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                ++     E   +   SA   L+ RE + L+L   G +++EI+E+L +S+HTV ++
Sbjct: 789 CPGAQRMRALLPEPPAEPAGSAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSH 848

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL    R QA+A+A   G +
Sbjct: 849 ARHINDKLGVERRTQAVARAKHMGLL 874


>gi|310657820|ref|YP_003935541.1| two-component response regulator yhcz [Clostridium sticklandii DSM
           519]
 gi|308824598|emb|CBH20636.1| Two-component response regulator yhcZ [Clostridium sticklandii]
          Length = 213

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++ LT+RE   + L   G +++ IA+ L +S  TV  ++ S   KL   +R Q    
Sbjct: 150 SQKLTKRELQVMSLISKGMSNKAIAKHLEISDKTVKNHVSSILRKLSLNDRTQIAVY 206


>gi|239934239|ref|ZP_04691192.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291442685|ref|ZP_06582075.1| two-component system regulatory protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345580|gb|EFE72536.1| two-component system regulatory protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   + L   G +++EIA ++ +S  T   ++  A  KL   +R Q +  A   
Sbjct: 153 EGLTDREREAVALVAQGLSNDEIAGRMVISPLTAKTHVNRAMTKLRVRDRAQLVVLAYES 212

Query: 232 GYI 234
           G +
Sbjct: 213 GLV 215


>gi|258650774|ref|YP_003199930.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553999|gb|ACV76941.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 230

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 34/68 (50%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+     LT RET  LQL   G+ + EIA  L L   TV  +LG    KL   +R +AIA
Sbjct: 152 RAPELDRLTPRETEVLQLVARGHNNAEIAALLHLGETTVKTHLGRVLDKLGLRDRNKAIA 211

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 212 FAYDSGLV 219


>gi|182415168|ref|YP_001820234.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842382|gb|ACB76634.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 238

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 36/84 (42%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           GA  + +         R  A   LT RE   L+   +G  S+EIA++L LS  TV  +  
Sbjct: 132 GASAKRLLQQEAHAAMRLGAGPALTNREREVLRYVAEGLGSKEIADRLALSTRTVENHRA 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   +    +  Q +  A R G I
Sbjct: 192 NILKRTGLRSVAQLVLYAARLGLI 215


>gi|171315760|ref|ZP_02904992.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria MEX-5]
 gi|171099059|gb|EDT43839.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria MEX-5]
          Length = 891

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 44/100 (44%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           T+       E +     AC             R      LT +E   LQL  +GY++  I
Sbjct: 791 TATRDPALTEYVTRLTQACGDFDESEDSTAGARPQLLDPLTPKEIRVLQLLAEGYSNSAI 850

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AEKL +S  TV  +L +   K+ A +R QA+A + R G I
Sbjct: 851 AEKLFVSDSTVRTHLRNINNKVGAHSRTQAVAISRRLGVI 890


>gi|188990306|ref|YP_001902316.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732066|emb|CAP50258.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 921

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 827 RALTIQALLDRLSGDDDPANDLFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 887 VYRKLDARSREGALAQALQRGLL 909


>gi|160875358|ref|YP_001554674.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160860880|gb|ABX49414.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315267557|gb|ADT94410.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 214

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  + +IAE L + + TV  +  +   KL+A N  + +    R G 
Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214


>gi|37520342|ref|NP_923719.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211335|dbj|BAC88714.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 301

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                +        + R     A +LT+RE   L L    YT+ EIA+ L +S  TV+++
Sbjct: 203 AIVRLIFEHAYLPEEPRKPGKLAISLTKREQEILGLIAQEYTNSEIAKHLYISPRTVDSH 262

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL   N    +  A++ G +
Sbjct: 263 RARLMQKLGTRNTAGLVRIAVQQGLL 288


>gi|307300268|ref|ZP_07580048.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307321145|ref|ZP_07600549.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306893220|gb|EFN24002.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904434|gb|EFN35018.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 262

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT RE   L L   G  ++ IA++LGLS +TV  ++ +   K++  NR +A ++  R 
Sbjct: 188 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRN 245


>gi|229030955|ref|ZP_04186971.1| Two-component protein Kinase [Bacillus cereus AH1271]
 gi|228730302|gb|EEL81266.1| Two-component protein Kinase [Bacillus cereus AH1271]
          Length = 592

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|269125106|ref|YP_003298476.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268310064|gb|ACY96438.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 954

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 51/157 (32%), Gaps = 14/157 (8%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
             Q           +           G  F       +            LA   + EA 
Sbjct: 796 EAQLARAHGRRDLAAWDAAAAAWERIGQPFARARALAEAAEAALAGGERDLAARRLQEAE 855

Query: 151 GACYQVITDFL-----------ELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAE 196
               ++    L            L     SAAR+   LT RE   L+L   G T+ EIAE
Sbjct: 856 ALAGRLRAAPLARRLEETARRGRLNGTAPSAARSPYGLTPRELEVLRLVAQGRTNREIAE 915

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L +S  TV+ ++ +   KL    R +A A A R G 
Sbjct: 916 VLFISAKTVSVHVSNILAKLQVPTRGEAAATAHRLGL 952


>gi|153802230|ref|ZP_01956816.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|124122254|gb|EAY40997.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
          Length = 214

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 1/121 (0%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
           RL    L   G    +       G++       ++  +  +  H +   +          
Sbjct: 89  RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           ++ A+ +LT RE   L+    G ++ +IAE L +S  TV ++L     KL+  NR++AIA
Sbjct: 148 QAQASVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207

Query: 227 K 227
            
Sbjct: 208 W 208


>gi|42782344|ref|NP_979591.1| response regulator receiver domain-containing protein [Bacillus
           cereus ATCC 10987]
 gi|42738269|gb|AAS42199.1| Response regulator receiver domain protein [Bacillus cereus ATCC
           10987]
          Length = 592

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETSQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|21232702|ref|NP_638619.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767223|ref|YP_241985.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114513|gb|AAM42543.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572555|gb|AAY47965.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 921

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 827 RALTIQALLDRLSGDDDPANDLFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 887 VYRKLDARSREGALAQALQRGLL 909


>gi|78049092|ref|YP_365267.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037522|emb|CAJ25267.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 923

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 827 RALTIQALLERLSGDDDPADDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 887 LYRKLDARSRESALAQALQRGLL 909


>gi|94985808|ref|YP_605172.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94556089|gb|ABF46003.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 221

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 140 MLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
             +++ + +A  A  +            L    +       LT +E   LQL   GY++ 
Sbjct: 113 DASSDTLADAIHAAARGEVRLHPEAARRLVRDFRTPEMRETLTPKEVIVLQLIARGYSNR 172

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +IA   G++  TV  ++     KL   +R QA   A+R G 
Sbjct: 173 DIARDQGVTEATVKTHVSRLLGKLGLESRTQAALYALRHGL 213


>gi|315123187|ref|YP_004065193.1| putative csg operon transcription regulator (LuxR family) protein
           [Pseudoalteromonas sp. SM9913]
 gi|315016947|gb|ADT70284.1| putative csg operon transcription regulator (LuxR family) protein
           [Pseudoalteromonas sp. SM9913]
          Length = 229

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT+RE S + L   G ++ +IA+KL +S HTV  +L SA  K ++ NR++    A R
Sbjct: 163 LTKREKSVIHLIAQGASNNKIADKLNISDHTVKTHLYSAFKKTNSRNRVELANWAQR 219


>gi|315128079|ref|YP_004070082.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016592|gb|ADT69930.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 218

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
             +++  A     Q   D L            LT+RE + + L  +G  ++EIAE+L +S
Sbjct: 123 RRDIMCNALNRMLQFNKDALHKLTDGDIEPIKLTKREKAIISLMSNGSKNKEIAEELSIS 182

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            HTV  +L SA  K    NRI+ ++ A + 
Sbjct: 183 PHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 225

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT  E   +Q    G  + EIAE+L +S  TV +++ +   K +  NR +    AI  
Sbjct: 164 QLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222


>gi|298243182|ref|ZP_06966989.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297556236|gb|EFH90100.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1019

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 173  NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             LT RE   L+L   G TS +IAEKL +S+ TVN ++ S   KL   +R  A   A+   
Sbjct: 957  GLTTREIEVLRLLATGMTSAQIAEKLVISILTVNTHVRSIYSKLGVTSRSAATRYALEHK 1016

Query: 233  YI 234
             +
Sbjct: 1017 LL 1018


>gi|289645094|ref|ZP_06477121.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289505091|gb|EFD26163.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 421

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +LT RE   L+    G T+ +IA  L ++  TV +++     KL A NR  A+A+
Sbjct: 348 SLTPRECEVLRSLASGKTNAQIASSLFVTEGTVKSHVKHILRKLGAANRTDAVAR 402


>gi|254393534|ref|ZP_05008669.1| luxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294811039|ref|ZP_06769682.1| LuxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326439619|ref|ZP_08214353.1| luxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197707156|gb|EDY52968.1| luxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294323638|gb|EFG05281.1| LuxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAG 186
           G  +  +   + + + +++        + + L   +     A  L   TERE   L+L G
Sbjct: 119 GSDLVAAVRTVASGQSMLDPATTAR--LMNSLRAPRTPDPEADRLGGLTEREREILELIG 176

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +G T+ +I  +L L+  TV  ++     KL    RIQA   A +F  
Sbjct: 177 EGLTNRQIGARLYLAEKTVKNHISRLLAKLGVERRIQAAVLATQFRL 223


>gi|54024864|ref|YP_119106.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016372|dbj|BAD57742.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 215

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           + A   ++       +  +     LTE+E + L L G+G T+ +IA ++ L+  TV  Y+
Sbjct: 127 NRAAAALMAKLRAEAEADTGPLAALTEQERTLLALLGEGLTNRQIAARMFLAEKTVKNYV 186

Query: 210 GSATVKLDAVNRIQAIAKAIRF 231
                KL    R QA   A + 
Sbjct: 187 SRLLTKLGVERRTQAAVLAAKL 208


>gi|13471370|ref|NP_102936.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099]
 gi|14022112|dbj|BAB48722.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099]
          Length = 206

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 19/158 (12%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-----------IFT 135
                I  +        +   ++   L        V    H  G +            F 
Sbjct: 47  FDVAIIGWKLADMDGADVLAEVQSRKLDVR---ITVFSNDHDIGILKQCVRLGAQGYCFQ 103

Query: 136 SEFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +   +  + I+  AHG       D  ++          LT RE   L +  DG+T+ +I
Sbjct: 104 FDDPAIIFDTILAVAHGRICIPYIDINKVNDT---PLAQLTVRERELLAVLSDGWTNLQI 160

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA-KAIRF 231
           A + G+S +TV  +L +   KLD  NR  A+A  A   
Sbjct: 161 ATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYARER 198


>gi|300698252|ref|YP_003748913.1| LuxR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074976|emb|CBJ54545.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 252

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 62/209 (29%), Gaps = 13/209 (6%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             ++  +  R+ A    +                +Y  +                +  + 
Sbjct: 28  ESVRPILNHRHLA--CGHGRTTSSGVAMDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWL 85

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           S   P+ +      +  E +  + +            A  V    +  G          +
Sbjct: 86  STRRPVYF---DAASPWEGTDPVWLEKFVKHDLHNCAADAVFDEANCVGTYFSFHALPTV 142

Query: 142 A--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                     ++    HGA  + +       ++ S A   LTERE     L G G ++ E
Sbjct: 143 EEGCLDATLRDLTPALHGALLRAVASVERDLQQASQALATLTEREREVALLIGQGRSNAE 202

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           IA+ +  S  TV  YL S   K    NR+
Sbjct: 203 IAQVVCKSESTVKHYLSSIMDKTGCENRV 231


>gi|297194807|ref|ZP_06912205.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720731|gb|EDY64639.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             S     LT RE   L L   G++++EIA +L +S  TV  ++  A  KL A +R Q +
Sbjct: 156 DLSERLSALTVREREVLVLVAGGHSNDEIATRLEVSPLTVKTHVNRAMAKLGARDRAQLV 215

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 216 VTAYESGLV 224


>gi|254388484|ref|ZP_05003718.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814098|ref|ZP_06772741.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326442500|ref|ZP_08217234.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702205|gb|EDY48017.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326697|gb|EFG08340.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 207

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               GY++       L   +   A G            + + R     +LTERE   L  
Sbjct: 97  AGATGYLLKAERPEELFAAIRAAAQGRTALSAPVATRVMDRMRGGGRPSLTERELDILGQ 156

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + EIA  L +S  TV  +LG    KL    R  A++ A     +
Sbjct: 157 LARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVSVAKEQRLL 206


>gi|46580981|ref|YP_011789.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450401|gb|AAS97049.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234669|gb|ADP87523.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris RCH1]
          Length = 216

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                +  +S    L++RE   L+L  +G+ ++ +AEKL +S  TV  +  +   KL   
Sbjct: 139 LRHGRRDEASMLDLLSDREKQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTA 198

Query: 220 NRIQAIAKAIRFGY 233
           +  + +  AI  G 
Sbjct: 199 STAELVTFAIEHGL 212


>gi|229046883|ref|ZP_04192515.1| Two-component protein Kinase [Bacillus cereus AH676]
 gi|228724428|gb|EEL75753.1| Two-component protein Kinase [Bacillus cereus AH676]
          Length = 592

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|229179482|ref|ZP_04306835.1| Two-component protein Kinase [Bacillus cereus 172560W]
 gi|228603983|gb|EEK61451.1| Two-component protein Kinase [Bacillus cereus 172560W]
          Length = 592

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +     +AA  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ +A+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQRALEIGII 591


>gi|229818603|ref|YP_002880129.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564516|gb|ACQ78367.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 221

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           K      +LT+RE   L    +G +++EIA KL LS  TV  ++     KL A +R Q +
Sbjct: 147 KAVPGLDHLTDREREVLVTVAEGLSNDEIAAKLFLSPSTVKTHVSRTMTKLAARDRAQLV 206

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 207 VAAYESGLV 215


>gi|256378301|ref|YP_003101961.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922604|gb|ACU38115.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--------ITDFLELFKKRSSAARNLTE 176
           G           E L+ A   +    G   Q               L     +    LT 
Sbjct: 98  GASGFVLKDCDPEDLVSAIRRLAAGQGLLDQAVTRRVIGEFARRAPLPAVDPAVEDLLTA 157

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   + L  +G ++ EIAE L +   TV ++LG A  K+ A +R+Q +  A + G 
Sbjct: 158 REKEVVVLLAEGRSNVEIAEALFIEPSTVKSHLGRAMTKIGARDRLQTVVWAYQNGL 214


>gi|77408114|ref|ZP_00784861.1| response regulator [Streptococcus agalactiae COH1]
 gi|77173298|gb|EAO76420.1| response regulator [Streptococcus agalactiae COH1]
          Length = 196

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+++E   L L   G TS+EIA  L LS  TV  Y  +   KL   NR++A+  A  
Sbjct: 133 SNPLSKQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIARE 192

Query: 231 FGYI 234
             ++
Sbjct: 193 KDWL 196


>gi|47564405|ref|ZP_00235450.1| two-component protein Kinase [Bacillus cereus G9241]
 gi|47558557|gb|EAL16880.1| two-component protein Kinase [Bacillus cereus G9241]
          Length = 592

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|332685604|ref|YP_004455378.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332369613|dbj|BAK20569.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 201

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G  +++IAE L LS  TV  Y+ +   K    +RI+AI  A   G
Sbjct: 140 PLTDREIEILNLLKKGANTKQIAENLFLSNGTVRNYISAILNKTGTKSRIEAINLANEQG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|300791111|ref|YP_003771402.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800625|gb|ADJ51000.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 151 GACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           G    V+ ++  +    S  A       LTERET  L+L   G T+ +IAE+L LS  TV
Sbjct: 132 GLAGLVLGEYRRMADASSEDAAGAEPPRLTERETDVLRLVAKGLTARQIAERLVLSHRTV 191

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++ S   KL   NR++    AI  G 
Sbjct: 192 ENHVQSTLRKLQLHNRVELARYAIEHGL 219


>gi|297160777|gb|ADI10489.1| putative two-component regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 262

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                  +   +++  +      A        + + K R     +LTERE   L     G
Sbjct: 117 AALFTVAAGDAVVSPGLARALIHAVRHGPRPEVPIAKGRL---EDLTERERDILVAVASG 173

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIA +L ++  TV +++     K+ A  R+QA+  A   G +
Sbjct: 174 RSNAEIAAQLSIATTTVKSHVSRILTKIGARARVQAVVFAYESGLV 219


>gi|302532669|ref|ZP_07285011.1| two component system response regulator [Streptomyces sp. C]
 gi|302441564|gb|EFL13380.1| two component system response regulator [Streptomyces sp. C]
          Length = 191

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G   ++I +F    ++ + A     LT+RE   + L G G ++EEIA +L +S  T   +
Sbjct: 100 GVTRRLIAEFAARSRRPAPAEGLERLTDREREVMALVGTGLSNEEIARRLVVSPLTAKTH 159

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    VKL A +R Q +  A   G +
Sbjct: 160 VSRTMVKLGARDRAQLVVLAYETGLV 185


>gi|256822565|ref|YP_003146528.1| two component LuxR family transcriptional regulator [Kangiella
           koreensis DSM 16069]
 gi|256796104|gb|ACV26760.1| two component transcriptional regulator, LuxR family [Kangiella
           koreensis DSM 16069]
          Length = 214

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           Q++        ++      LT RET  L+    G +++ IA KL ++  TV  ++     
Sbjct: 135 QILAKSFRPKAEKEEFLEALTNRETQILRYISQGDSNKVIARKLEIAESTVKVHVKHLLK 194

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           K++  +RI+A   A+    
Sbjct: 195 KINLKSRIEAALFAVENKL 213


>gi|218513962|ref|ZP_03510802.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 111

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+ + L      +S   +LT RE   + L   G +++ I  +L L   TV  ++  
Sbjct: 34  MSTKVMENSLH---DAASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQ 90

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL   NR +A  +    
Sbjct: 91  ILSKLGVSNRTEAALQWRER 110


>gi|323976153|gb|EGB71246.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 209

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147
           I      E+   L  RL      F  I   +          +       L      E ++
Sbjct: 53  IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDTPTFVQSALDAGASGYLTKRCGPEELV 112

Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +A        H  C   I   L   ++ + A   LT RE     L   G + +EIA KL 
Sbjct: 113 QAVRSVGMGGHYLCADAI-RALRGGEQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV+ +  +   KL+  + I+ +  A+    +
Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALNHHLL 206


>gi|312140713|ref|YP_004008049.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311890052|emb|CBH49370.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 222

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190
            +  +   +   + +IEA      +      L    + +   ++T RE   L+    G +
Sbjct: 110 ELLAAIRTVHRGDAVIEARSTRKLLQHVGPMLSDSAAPSLPEDMTPREIEVLEAMAHGLS 169

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA+K  +S  TV  ++G    K  + +R+QA+  A + G +
Sbjct: 170 NSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVGLV 213


>gi|256396913|ref|YP_003118477.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363139|gb|ACU76636.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 227

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L G G ++ E+A +L LS  TV  ++     KL   +R QA+  A   G
Sbjct: 160 ALTPREREILALMGRGLSNTELAARLVLSEATVKTHVAHIFTKLSLRDRAQAVVVAYETG 219

Query: 233 YI 234
            +
Sbjct: 220 LV 221


>gi|182437703|ref|YP_001825422.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778339|ref|ZP_08237604.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466219|dbj|BAG20739.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658672|gb|EGE43518.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 221

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 4/135 (2%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +         +            V               L  
Sbjct: 84  FDLDEYAYDGLRAGASGFLVKDALPEELLAGIRAVAAGDAVVAPTLTRRLLDAYVHHLPA 143

Query: 164 FKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                +AA      LTERE   L + G G+++ EIA +L L+  TV  ++     K  A 
Sbjct: 144 TPGAPAAADPRITALTEREREILTVIGQGWSNSEIAARLHLAESTVKTHVTRILAKTGAR 203

Query: 220 NRIQAIAKAIRFGYI 234
           +R+QA+  A     +
Sbjct: 204 DRVQAVILAYDTRLV 218


>gi|169630793|ref|YP_001704442.1| two-component LuxR family response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169242760|emb|CAM63788.1| Putative two-component system response regulator, LuxR family
           [Mycobacterium abscessus]
          Length = 215

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 3/123 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +          + +  +   A                     
Sbjct: 95  RAGARGYVTKTISGSELADAVRRVAGGDAVFSPRL---AGFVLDSFTGRSNAPEPALDPE 151

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE L +SV TV  +  +   K    NR      A  
Sbjct: 152 LDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHT 211

Query: 231 FGY 233
              
Sbjct: 212 RQL 214


>gi|119963767|ref|YP_948582.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119950626|gb|ABM09537.1| putative transcriptional regulator, LuxR family [Arthrobacter
           aurescens TC1]
          Length = 544

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 36/86 (41%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A         D LEL  + S  A  LT RE   L+L   G  +  IA +L LS  TV  +
Sbjct: 458 ADLGATPAAADVLELTGETSVDASPLTSRELEVLRLIAGGNANRTIARELYLSEKTVARH 517

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL   +R  A   A   G I
Sbjct: 518 VSNILSKLAVPSRAAATGYAFEHGLI 543


>gi|300790034|ref|YP_003770325.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799548|gb|ADJ49923.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           +++  +L   +     AR   LTERE   L L   G ++ EIA KL +   TV  ++G  
Sbjct: 133 RLLDRYLADERDPMDIARLGVLTEREKDVLGLIARGLSNSEIAAKLYIGETTVKTHVGRV 192

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R+ A+  A   G +
Sbjct: 193 LGKLRLRDRVHAVVFAYESGLV 214


>gi|325673029|ref|ZP_08152723.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325556282|gb|EGD25950.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 253

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 59/218 (27%), Gaps = 4/218 (1%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            ++ E   R+      +     A   +  + D          +  +  +           
Sbjct: 25  RTVPEFRTRIAAAMTDVFPVRVATCFVGDSYDSQFTDPDAALVGGHGWERNRPVYQEKWA 84

Query: 72  YGD-DFLFHFNSGLLPIIWQSIQEETVIES-SGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
             D          L      S+ +   + + +        G     +  A  + L     
Sbjct: 85  RHDIFATPEARRRLEHNRVASLGDLQDLPAGAAAYVRDYLGAWGLRSVSAMHLDLPGRAR 144

Query: 130 GYV-IFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGD 187
             V +F  +   L    +         +      L    R      LTER+    +L  D
Sbjct: 145 ALVGLFDGDDSALGTRDLATLRLLARHLSALTRNLETAPRRDPYAALTERQRDVARLVAD 204

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           G ++  IA +L L+  TV  Y+          +R Q  
Sbjct: 205 GMSNAAIARRLMLAEDTVKKYVSRILAATGCASRTQLA 242


>gi|209695795|ref|YP_002263725.1| nitrate/nitrite response regulator protein NarP [Aliivibrio
           salmonicida LFI1238]
 gi|208009748|emb|CAQ80054.1| nitrate/nitrite response regulator protein NarP [Aliivibrio
           salmonicida LFI1238]
          Length = 203

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDF 160
              L    +    +   V         +I              + +I       Q    +
Sbjct: 66  LHALRNEGVTCPIVILTVSDNKQDIKTLIKAGADGYLLKDSEPDELIALLKQAIQGDKAY 125

Query: 161 LE-----LFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            E     L + ++   +  +LT RE   LQ    G  ++++A+KL +S  TV  ++ S  
Sbjct: 126 SEQVKICLEEGKNGDDKLSSLTARELEILQNVAKGMRNKQVADKLFISEATVKVHMKSLL 185

Query: 214 VKLDAVNRIQA 224
            KL+  +R+ A
Sbjct: 186 KKLNVKSRVAA 196


>gi|168789970|ref|ZP_02814977.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli O157:H7 str. EC869]
 gi|189370464|gb|EDU88880.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli O157:H7 str. EC869]
          Length = 240

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|110596769|ref|ZP_01385059.1| regulatory protein, LuxR:Response regulator receiver [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341456|gb|EAT59916.1| regulatory protein, LuxR:Response regulator receiver [Chlorobium
           ferrooxidans DSM 13031]
          Length = 217

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D L         A  LT  E   ++L   G +++EIA K  +S HTV  +  +   KL  
Sbjct: 135 DILLKKDGPMEDASLLTTSEIEIVRLIAAGLSTKEIAVKKHISFHTVMTHRKNIFRKLSV 194

Query: 219 VNRIQAIAKAIRFGYI 234
            +  + +  AI+ G I
Sbjct: 195 SSSPELMMYAIKAGLI 210


>gi|86142105|ref|ZP_01060629.1| two-component response regulator [Leeuwenhoekiella blandensis
           MED217]
 gi|85831668|gb|EAQ50124.1| two-component response regulator [Leeuwenhoekiella blandensis
           MED217]
          Length = 216

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   L+    G +  +IAE L LS  TV  ++ +   KL   ++I+A+ KA +  
Sbjct: 155 SLSSREVEVLEQLSKGLSYTKIAENLFLSPSTVRKHIENIYKKLQVHSKIEAVEKARQNN 214

Query: 233 YI 234
            I
Sbjct: 215 II 216


>gi|330897589|gb|EGH29008.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 222

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +A            +++    E     ++    L  RE   L L   G+++ EI EKLG
Sbjct: 120 RVARGEEALNSAVSARLLRRMTERNTSGAALPETLPPRERQVLGLVAGGFSNREIGEKLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  T  A++     KL A +R QA  + +  G +
Sbjct: 180 ITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|307131286|ref|YP_003883302.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Dickeya dadantii 3937]
 gi|306528815|gb|ADM98745.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Dickeya dadantii 3937]
          Length = 215

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 16/142 (11%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY----- 154
             RL    L    + F V            +         M   ++++  H A       
Sbjct: 70  LARLRETPLSGRIVVFTVSNHEEDVISAFKSGADGYLLKDMEPEDLLVALHQAAAGKMVL 129

Query: 155 ------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                  +     E     +   + LT RE   L+L   G  ++ IA KL ++  TV  +
Sbjct: 130 SDALTPVLAASLRETRSSDTRDIQQLTPREKDILKLIAQGLPNKVIARKLTITESTVKVH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIR 230
           +     K+   +R++A    ++
Sbjct: 190 VKHLLKKMKLRSRVEAAVWVVQ 211


>gi|298385200|ref|ZP_06994759.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
 gi|298262344|gb|EFI05209.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
          Length = 258

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G  S+EIA+KL +S+HTVN +  +   KL   N I+AI      G
Sbjct: 196 PLTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQNSIEAIRIGYETG 255

Query: 233 YI 234
            +
Sbjct: 256 IL 257


>gi|171913285|ref|ZP_02928755.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 207

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 2/115 (1%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
             + L     GY+  T+    L   +   A G  Y        L   R      ++ RE 
Sbjct: 93  VQMALDAGAAGYLQKTASRDELLTALRRVAAGGSYLPPELEQRLADLRLCV--GISMRER 150

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L   G+ +++IA    +S  TV  ++     KL   +R QA A+AIR G +
Sbjct: 151 EILELIAKGHANKQIAALFAISEDTVKRHVSHILEKLGVHDRAQATAEAIRRGIV 205


>gi|126433026|ref|YP_001068717.1| LuxR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232826|gb|ABN96226.1| transcriptional regulator, LuxR family [Mycobacterium sp. JLS]
          Length = 544

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERE 178
             +R+           +  + L     +         +    E+     + A + LT RE
Sbjct: 429 VRLRMAQACRRMNDDDTAAMELDAARRVFEQLGAAPALAQVAEVSTNAPAGAPSGLTTRE 488

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+L   G T+ EIA  L +S  TV  +LG+   KLD  +R  A A A +   +
Sbjct: 489 LEVLRLLATGATNREIARTLVISEKTVARHLGNIFNKLDVSSRTAATAYAYQHDLV 544


>gi|22126270|ref|NP_669693.1| fimbrial Z protein; signal transducer [Yersinia pestis KIM 10]
 gi|45441481|ref|NP_993020.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596249|ref|YP_070440.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108807299|ref|YP_651215.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|145598492|ref|YP_001162568.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|149366138|ref|ZP_01888173.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|153947114|ref|YP_001401133.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|165927181|ref|ZP_02223013.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939732|ref|ZP_02228274.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009343|ref|ZP_02230241.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210811|ref|ZP_02236846.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401017|ref|ZP_02306520.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420230|ref|ZP_02311983.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167466513|ref|ZP_02331217.1| DNA-binding response regulator, LuxR family protein [Yersinia
           pestis FV-1]
 gi|170024496|ref|YP_001721001.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186895283|ref|YP_001872395.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218929039|ref|YP_002346914.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229894596|ref|ZP_04509777.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229897323|ref|ZP_04512479.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|21959244|gb|AAM85944.1|AE013841_9 fimbrial Z protein; probable signal transducer [Yersinia pestis KIM
           10]
 gi|4106621|emb|CAA21376.1| unnamed protein product [Yersinia pestis]
 gi|45436342|gb|AAS61897.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589531|emb|CAH21161.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108779212|gb|ABG13270.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|115347650|emb|CAL20563.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|145210188|gb|ABP39595.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|149292551|gb|EDM42625.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|152958609|gb|ABS46070.1| DNA-binding response regulator, LuxR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|165912320|gb|EDR30955.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920849|gb|EDR38097.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991898|gb|EDR44199.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207991|gb|EDR52471.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961925|gb|EDR57946.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049406|gb|EDR60814.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|169751030|gb|ACA68548.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186698309|gb|ACC88938.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229693660|gb|EEO83709.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229702351|gb|EEO90369.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262361879|gb|ACY58600.1| putative two-component response regulator [Yersinia pestis D106004]
 gi|262365982|gb|ACY62539.1| putative two-component response regulator [Yersinia pestis D182038]
          Length = 210

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|116671431|ref|YP_832364.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611540|gb|ABK04264.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24]
          Length = 545

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 5/180 (2%)

Query: 59  LDSGDIPNILIETYGD---DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP- 114
             +    + L     D     +   +      +  +  E    +   + +  L   L   
Sbjct: 364 AAARRSADELAAVAQDCAMPMVQAASCQAGGAVLLAEGEPARAQPVLRRAWMLWRELGVP 423

Query: 115 -FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             A     +     +       +E    A      A GA        LE    +   A  
Sbjct: 424 FEAARCRTLVGRACRASGDEDAAEMDFEAARAEFLALGAAPAAAWTSLEHTPVQEKDAGP 483

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L   G  +  IA +L LS  TV  ++ +  +KL   +R+ A   A   G 
Sbjct: 484 LTPREIEVLRLVAAGKANRVIAGELYLSEKTVARHISNIFLKLGLRSRVAATRYAFEHGL 543


>gi|332304832|ref|YP_004432683.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172161|gb|AEE21415.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 209

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 50/94 (53%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            ++E+I   H           EL          LT++E   L+LA DG ++E+IA KL L
Sbjct: 116 PSHELIAAIHKVHQGGAAIAPELMVGSWMEKDPLTDKERRALRLAKDGLSTEDIASKLFL 175

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV  YL SA+ KL+A NRI+A   A + G++
Sbjct: 176 STGTVRNYLSSASNKLNAKNRIEAARIAHQNGWL 209


>gi|299068412|emb|CBJ39636.1| putative response regulator, LuxR family [Ralstonia solanacearum
           CMR15]
          Length = 210

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCL 182
                GYV+  +    L   +     G  +      + + ++  +   A  LT RE   L
Sbjct: 98  RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVAPIPAEALTPRERDIL 157

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
                G++++ IA++LGLSV TV ++  S   KL    + + +  A+  G
Sbjct: 158 DGVAQGWSNKRIADELGLSVRTVESHRLSLKRKLGIEGQAELVKFAVEAG 207


>gi|254445671|ref|ZP_05059147.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259979|gb|EDY84287.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 213

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            +     + SS   +L+ RE   L+    G+T++EIA KL ++  TV+ +L +   KL  
Sbjct: 139 SYFRQEAQVSSDVDSLSNREREVLEFVAQGFTNKEIAAKLSVTPETVHWHLKNCYKKLHV 198

Query: 219 VNRIQAIAKAIR 230
             R +A  K  +
Sbjct: 199 RTRTEAAMKLRQ 210


>gi|170682157|ref|YP_001744145.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           SMS-3-5]
 gi|191172365|ref|ZP_03033906.1| transcriptional regulator CsgD [Escherichia coli F11]
 gi|312968892|ref|ZP_07783099.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 2362-75]
 gi|170519875|gb|ACB18053.1| transcriptional regulator CsgD [Escherichia coli SMS-3-5]
 gi|190907249|gb|EDV66847.1| transcriptional regulator CsgD [Escherichia coli F11]
 gi|312286294|gb|EFR14207.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 2362-75]
 gi|320178529|gb|EFW53494.1| Transcriptional regulator CsgD for 2nd curli operon [Shigella
           boydii ATCC 9905]
 gi|323174844|gb|EFZ60459.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli LT-68]
 gi|323185839|gb|EFZ71200.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1357]
 gi|333005785|gb|EGK25303.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-218]
          Length = 190

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 130 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184


>gi|71068215|gb|AAZ23070.1| possible response regulator [Streptomyces fradiae]
          Length = 241

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L G G ++ E+A +L LS  TV  ++     KL   +R QA+  A   G
Sbjct: 165 ALTPREREVLTLMGRGLSNAELARELTLSEATVKTHVSRIFAKLALRDRAQAVVLAYETG 224

Query: 233 YI 234
            +
Sbjct: 225 LV 226


>gi|70728347|ref|YP_258096.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342646|gb|AAY90252.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 848

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEK 197
            + + E       ++     L    S+         L+ RE   LQL   G ++++IAE+
Sbjct: 751 PQALHELRLRQPLLLAAGEALQTPSSAGPLENRESLLSLRELQVLQLIAQGCSNQQIAEQ 810

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +S+HTV  +      KL    R QA+AKA   G 
Sbjct: 811 LFISLHTVKTHGRRIHSKLGVERRTQAVAKAQALGL 846


>gi|239939391|ref|ZP_04691328.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 325

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G   ++I +F    K+ ++AA    LTERE   + L G G ++EEIA +L +S  T   +
Sbjct: 234 GVTRRLIAEFAARSKEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 293

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    VKL A +R Q +  A   G +
Sbjct: 294 VSRTMVKLGARDRAQLVVLAYESGLV 319


>gi|256390621|ref|YP_003112185.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356847|gb|ACU70344.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 365

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 17/227 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPNI 67
           ++   ++E+  RL  +  + +    AL         P ++          D         
Sbjct: 117 EELVGVEEVRTRLKTLSAQAQTEVIALV------PDPIQRPDTLAASKPLDAALLGRGVA 170

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           +   Y    L    +    I +         +     +V L   +        P+     
Sbjct: 171 MRTIY----LNSIRNDPASIAYTDWLAGVGGQVRTAPTVPLRLIVFDRTTALVPLDPRDT 226

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
             G  + T         V+        Q+      L        + L   E   L++  +
Sbjct: 227 SAGATVLTGIG------VVSAMCALFEQIWATANPLGLPNPPDTQGLGPEEREILRMLAN 280

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T E IA +LG+S  TV         +L   +R Q   +A   G++
Sbjct: 281 GETDEHIARRLGVSTRTVGRKASELMRRLGTRSRFQMGVRASELGWL 327


>gi|261365900|ref|ZP_05978783.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
 gi|288565546|gb|EFC87106.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
          Length = 220

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 + +         V +         + A   LT RE   L     G++++ IA K
Sbjct: 121 RKAAEGDNVFSPEMTARLVQSLIQPNTPPATRALDALTTRELEILGYLAAGHSNKIIARK 180

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L L+  T+  ++ S   KL+  +R+QA   A++ 
Sbjct: 181 LNLAESTIKVHVQSILRKLELSSRVQAAVYAVQH 214


>gi|146340687|ref|YP_001205735.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146193493|emb|CAL77509.1| putative transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 133

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 40/70 (57%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             R S A  LT RE   L L  +G +++EIA  LG+SVHT   ++GS   KLDA  R  A
Sbjct: 62  HGRDSDAFQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDA 121

Query: 225 IAKAIRFGYI 234
           +A A R G I
Sbjct: 122 VAHAARRGII 131


>gi|326331825|ref|ZP_08198112.1| putative LuxR-family transcriptional regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325950322|gb|EGD42375.1| putative LuxR-family transcriptional regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 972

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L    +                 + A      ++T      +  +  +  LT RE+  L 
Sbjct: 861 LRAGGDTVAARELADQARETAKRLGAQPLLDHLLTLGTTPQRSAAGPSGQLTARESEILA 920

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ EI ++L +S  TV+ ++ +   KL A  R +A A   R G +
Sbjct: 921 LVAAGRSNGEIGKQLFISTKTVSVHVSNILAKLGASGRTEAAAIGRRRGLV 971


>gi|301299416|ref|ZP_07205696.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853022|gb|EFK80626.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 218

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  +T+ E   +   G G +++EI+++L LS  TV  +L     KL+  +R Q    A++
Sbjct: 154 AALITDAEWRVIYQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQ 213

Query: 231 F 231
            
Sbjct: 214 N 214


>gi|300214009|gb|ADJ78425.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 218

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  +T+ E   +   G G +++EI+++L LS  TV  +L     KL+  +R Q    A++
Sbjct: 154 AALITDAEWRVIYQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQ 213

Query: 231 F 231
            
Sbjct: 214 N 214


>gi|300783203|ref|YP_003763494.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792717|gb|ADJ43092.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A     ++    L            LT RE   L L G G ++ +IA K+ +   TV A+
Sbjct: 130 AQRVIARLSGGQLARAAAARERIAALTPREREVLTLLGSGLSNADIAAKMFVVEGTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   +L A NR+QA   A   G +
Sbjct: 190 VSTILNRLGAKNRVQAAITAYEAGLV 215


>gi|312196246|ref|YP_004016307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227582|gb|ADP80437.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 230

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAAR------N 173
           +  G         + E L+ A  ++          IT  L      + S AAR       
Sbjct: 101 LTAGASGFLLKDVSPEHLVAAVRLVRMGDALLAPAITRRLVERFASRDSGAARLHRDLSA 160

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+    G ++ E+A +  LS  TV  ++     KL   +R QA+  A   G 
Sbjct: 161 LTPRELEVLEFLAQGLSNAELAARFQLSEATVKTHVARILAKLQVRDRAQAVIVAYETGL 220

Query: 234 I 234
           I
Sbjct: 221 I 221


>gi|257068341|ref|YP_003154596.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256559159|gb|ACU85006.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 225

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174
           L    +G+++  S    L + V + A G           +I DF+   ++ + A  +L  
Sbjct: 101 LRAGASGFLLKDSTPEELVHAVRVVADGQSLLAPPVTRALIADFVARPERSAGADASLAV 160

Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            TERE   L+    G  + EIA +L ++  TV  ++     KL   +R Q +  A   G 
Sbjct: 161 LTERELEVLRGVARGLANREIAAELVMAEQTVKTHVSRILGKLMLRDRTQLVVAAYESGL 220

Query: 234 I 234
           +
Sbjct: 221 V 221


>gi|227892373|ref|ZP_04010178.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|227865780|gb|EEJ73201.1| response regulator [Lactobacillus salivarius ATCC 11741]
          Length = 220

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  +T+ E   +   G G +++EI+++L LS  TV  +L     KL+  +R Q    A++
Sbjct: 156 AALITDAEWRVIYQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQ 215

Query: 231 F 231
            
Sbjct: 216 N 216


>gi|163754837|ref|ZP_02161958.1| two-component response regulator [Kordia algicida OT-1]
 gi|161324904|gb|EDP96232.1| two-component response regulator [Kordia algicida OT-1]
          Length = 225

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RET  L+L    +T++EI E+L +S  TV  +  +  +K    N    +  AI+ 
Sbjct: 153 DALTSRETDILKLLCQQFTTKEIGEQLFISPKTVETHKTNLLLKTGVKNTAGLVIYAIQN 212

Query: 232 GYI 234
             +
Sbjct: 213 KIV 215


>gi|90961071|ref|YP_534987.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820265|gb|ABD98904.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 218

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  +T+ E   +   G G +++EI+++L LS  TV  +L     KL+  +R Q    A++
Sbjct: 154 AALITDAEWRVIYQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQ 213

Query: 231 F 231
            
Sbjct: 214 N 214


>gi|58616223|ref|YP_195352.1| hypothetical protein p1B112 [Azoarcus sp. EbN1]
 gi|56315684|emb|CAI10328.1| hypothetical protein p1B112 [Aromatoleum aromaticum EbN1]
          Length = 228

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 12/180 (6%)

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                        D F+ H      PI+     +     S  +  ++   G L   G+  
Sbjct: 42  WMPRYARNNWALVDPFVLHTQHSNTPILVPYDVD--GESSGQKEFLKKLYGELFAYGVVV 99

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARN 173
           P+ L   +   +++      L+ + I EA      +       +    E+ ++       
Sbjct: 100 PIHL-AQERLALLYAGNNQELSRKTIEEAVPIVAAIGQEAAIWLEAQREVEERN--RVLP 156

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT  E   L LA  G+++++IA    ++  TVN     A  KL   +R  A   A R G 
Sbjct: 157 LTATELELLSLARRGFSTKDIAAMQKITTATVNNIFRRANEKLGTHSRQDAAITAERLGL 216


>gi|37528106|ref|NP_931451.1| hypothetical protein plu4274 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787543|emb|CAE16646.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 219

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 4/122 (3%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
                             +R        V    + L    +     +     +    L +
Sbjct: 93  YYHEFMQPNNIQDIAEIFIRQHNQIIAGVSLLRDTLFTPKDF----NRLSAILPLIELAV 148

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     LT +E   + L  +G +++ IA+ L +S+ TV  +L +   K    NR +
Sbjct: 149 RDLLPETPTILTAKEQEIINLIREGSSNKRIAQILNISLSTVKTHLRNIFAKTKVTNRTE 208

Query: 224 AI 225
            +
Sbjct: 209 LV 210


>gi|296388940|ref|ZP_06878415.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 268

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             +       N+A    + +                           +    D F     
Sbjct: 32  QTLGQSAPVDNWAALIFSDSSPLILSFMEEEIEEIEPDPLISRYITGLYL-QDPFYQVSR 90

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           +     ++      +    + +         +    + + V L   +   +         
Sbjct: 91  NCRRGGLFHLADIVSEDFETTEYYNAYFAHYVVTDEVQYNVPLDGERTLCLSL-GSESRF 149

Query: 142 ANEVIIEAHGACYQV---------ITDFLELFKKRSSAAR-----------NLTERETSC 181
             E I         V           D +    K  +AA             LT RE+  
Sbjct: 150 GAEQIALFELLRPWVIALMKKRIHFEDAVREEAKPIAAAEVEVQPWRGLISPLTARESDV 209

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           ++L  DGY+++EIA++L LS+ T+  +      KL+  +  +
Sbjct: 210 IRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLNVKSHSE 251


>gi|271961858|ref|YP_003336054.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505033|gb|ACZ83311.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           G    V+ ++  L  +R +     LT+RET  L+L   G +  ++AE+L LS  TV  ++
Sbjct: 130 GLAGLVLGEYRRLATQRPADDGPRLTDRETEVLRLVAKGLSYRQVAERLVLSHRTVQNHV 189

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
            +   KL   NR + +  AI  G 
Sbjct: 190 QNTLNKLQLHNRAELVRYAIERGL 213


>gi|284032390|ref|YP_003382321.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811683|gb|ADB33522.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 228

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + R   +  L+ R    ++    G T++EIA +L +S+ TV ++L +   KL   NR + 
Sbjct: 146 RGRGMPSPELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLAAIQAKLGVRNRTEI 205

Query: 225 IAKAIRFGYI 234
              A     +
Sbjct: 206 AVWAWENHLV 215


>gi|212640439|ref|YP_002316959.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561919|gb|ACJ34974.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 213

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             +++  +F +L KK      +LT+ E S L+L   GYT +EIA  L +S+ TV  ++  
Sbjct: 132 IAHKIRKEFCKLRKKEQMTC-SLTKTEISILKLIDQGYTQKEIANHLVISIQTVKNHVSR 190

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A N   A+ KA   G++
Sbjct: 191 ILKKLSAKNSKHAVCKAREMGFL 213


>gi|116251601|ref|YP_767439.1| two component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256249|emb|CAK07330.1| putative two component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 207

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+ + L      +    +LT RE   + L   G +++ I  +L L   TV  ++  
Sbjct: 130 MSAKVMENSLH---GGTPEKNSLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQ 186

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL A NR +A  +    
Sbjct: 187 ILSKLGASNRTEAALQWRER 206


>gi|300782878|ref|YP_003763169.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792392|gb|ADJ42767.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +  +  ++ + + ++ A     +++ +F  L     +    +T RE   L L   G
Sbjct: 106 RPADLLAAIEVVASGDALL-APSVTRRLVAEFARLPSGPVTRLDGVTAREQEVLTLIARG 164

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +++EIA +L L + TV  ++G    KL A +R Q +  A   G +
Sbjct: 165 LSNDEIAARLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV 210


>gi|326315443|ref|YP_004233115.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372279|gb|ADX44548.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 254

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               E        A  L+ RE   L+    G +++EIA  L ++  TV  ++     KL 
Sbjct: 178 AIACEPEAATPGGASPLSPREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLG 237

Query: 218 AVNRIQAIAKAIRF 231
             +R+QA   A   
Sbjct: 238 LSSRVQAAVYASER 251


>gi|329940271|ref|ZP_08289553.1| respose regulatory protein [Streptomyces griseoaurantiacus M045]
 gi|329301097|gb|EGG44993.1| respose regulatory protein [Streptomyces griseoaurantiacus M045]
          Length = 211

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 37/109 (33%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++       L   +   A G           L  +       L+ RE+  LQ  
Sbjct: 102 AGATGYLLKAERPEELFAAIRDAAAGRAALSPPVADRLLARLRDPRPALSARESEILQQL 161

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA  L +S  TV  +L     KL    R  A+A A     +
Sbjct: 162 SGGLGNREIARALFISEATVKTHLQRIYGKLGVETRAGAVAVAKERRLL 210


>gi|284042145|ref|YP_003392485.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946366|gb|ADB49110.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 151 GACYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                V    L  F  ++          LT+RE   L L   G T+ EIA +L + + TV
Sbjct: 127 LIAPNVTRRLLATFADQAPVVPVQPIDPLTKREEEVLALVARGRTNAEIATELFVGLSTV 186

Query: 206 NAYLGSATVKLDAVNRIQAIAKAI 229
             ++ S   KL A NR++    A 
Sbjct: 187 KTHVASLMTKLGARNRVEIAIWAY 210


>gi|271966918|ref|YP_003341114.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510093|gb|ACZ88371.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 226

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 151 GACYQVITDFLELFKKRSSAARNL-------TERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                V    +  F +R   ++ L       T RE   L L   G ++ EIA  L LS+ 
Sbjct: 126 LLAPTVTRRLIAEFARRPEPSQPLAGELGGVTGRERDVLALIARGLSNTEIAGHLRLSLA 185

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  ++G    KL A +R Q +  A   G +
Sbjct: 186 TVKTHVGRLLSKLGARDRAQLVILAYETGLV 216


>gi|222150392|ref|YP_002559545.1| two-component response regulator NreC [Macrococcus caseolyticus
           JCSC5402]
 gi|222119514|dbj|BAH16849.1| two-component response regulator NreC [Macrococcus caseolyticus
           JCSC5402]
          Length = 216

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L L   GY ++EIAE L +SV TV A+      KL+  ++ + +  A++   
Sbjct: 154 LTKRELEILPLIAKGYGNKEIAEMLYVSVKTVEAHKARIMDKLELKSKPELVEYALKKKL 213

Query: 234 I 234
           +
Sbjct: 214 L 214


>gi|327313696|ref|YP_004329133.1| LuxR family transcriptional regulator [Prevotella denticola F0289]
 gi|326945245|gb|AEA21130.1| transcriptional regulator, LuxR family [Prevotella denticola F0289]
          Length = 209

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G  ++EIAEKL +S+ TV  +  +   KL   +       A+  GY
Sbjct: 144 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGY 203

Query: 234 I 234
           I
Sbjct: 204 I 204


>gi|325860035|ref|ZP_08173162.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
 gi|325482561|gb|EGC85567.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
          Length = 203

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G  ++EIAEKL +S+ TV  +  +   KL   +       A+  GY
Sbjct: 138 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGY 197

Query: 234 I 234
           I
Sbjct: 198 I 198


>gi|311897623|dbj|BAJ30031.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 331

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 78/233 (33%), Gaps = 15/233 (6%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           +    + ++ S  + +  RL  +   ++           A      ++ +      +   
Sbjct: 110 TATDASSEQLSGPESIRERLAELAGSVRQE-----VATFAPGGAHSEEDLRASRTPNAAL 164

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
            +    +   Y D    H    L  + W     +   +      + +   +        P
Sbjct: 165 LERGVQMRTVYLDSVRNH-RPTLDHVTW---LNQQGGQVRTVPELPIRMIIFDRQQAVLP 220

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +     + G V+            +         V  + + +       A  +  +E + 
Sbjct: 221 IDTEDARAGAVVLRG------AGTVAALCALFESVWDNAIPVGDVPKCEADGMPPQELAV 274

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L++   GYT E IA+++G+S  T   +  +   +LDA +R +A   A++ G++
Sbjct: 275 LKMLSQGYTDEAIAKRMGVSPRTARRFAANLMERLDARSRFEAGVHAVQDGWL 327


>gi|300790735|ref|YP_003771026.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800249|gb|ADJ50624.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 221

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 4/106 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +      ++   V               LE           LT RE   L L    
Sbjct: 114 AAMRVAARGDALIDPSVTRRLVAK----FATVLEPAAAEPPELARLTSREREVLLLLAGA 169

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIA KL +   TV  ++     KL   +R+ A+  A R   +
Sbjct: 170 CSNAEIARKLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKLV 215


>gi|291518206|emb|CBK73427.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Butyrivibrio fibrisolvens 16/4]
          Length = 210

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            ++    E        +++++E+E   +QL  +G++++EIA+KL LS  TV  YL +   
Sbjct: 134 ALMNSATEEDSGFDYQSKDISEKEYEVIQLVAEGFSNKEIAQKLFLSEGTVRNYLSTILE 193

Query: 215 KLDAVNRIQAIAK 227
           KL+  +R Q    
Sbjct: 194 KLELRDRTQLAIF 206


>gi|282859564|ref|ZP_06268669.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
 gi|282587792|gb|EFB92992.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
          Length = 200

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G  ++EIAEKL +S+ TV  +  +   KL   +       A+  GY
Sbjct: 135 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 194

Query: 234 I 234
           +
Sbjct: 195 V 195


>gi|260591672|ref|ZP_05857130.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
 gi|260536472|gb|EEX19089.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
          Length = 204

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G  ++EIAEKL +S+ TV  +  +   KL   +       A+  GY
Sbjct: 139 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 198

Query: 234 I 234
           +
Sbjct: 199 V 199


>gi|228958760|ref|ZP_04120472.1| Response regulator receiver [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800899|gb|EEM47804.1| Response regulator receiver [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 537

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLE--LFKKRSSAAR-N 173
           +R G          S  L  +  ++        H   +++  +  E  LF+ RS      
Sbjct: 416 IRNGADGYVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGIEYG 475

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+L   G   + IA  L LS  TV  Y  +   KL   NR +A+ KA   G 
Sbjct: 476 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 535

Query: 234 I 234
           +
Sbjct: 536 L 536


>gi|111224287|ref|YP_715081.1| LuxR family transcriptional regulator [Frankia alni ACN14a]
 gi|111151819|emb|CAJ63539.1| Putative LuxR-family transcriptional regulator [Frankia alni
           ACN14a]
          Length = 349

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L     G ++ E A +L +S  TV AYL S   KL   NR  A+  A + G
Sbjct: 287 ALTPRELEVLAQVALGLSNVETARRLTVSPETVKAYLRSIMRKLGVRNRTAAVHAARQLG 346

Query: 233 YI 234
            +
Sbjct: 347 ML 348


>gi|329928337|ref|ZP_08282208.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937894|gb|EGG34299.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 599

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 36/68 (52%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + S+A +LT RE   LQ   +G   + IA KL LS  TV  Y  S  +KL   NR +A+ 
Sbjct: 531 KVSSAYDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQ 590

Query: 227 KAIRFGYI 234
           KA   G +
Sbjct: 591 KAREAGLL 598


>gi|302519560|ref|ZP_07271902.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302428455|gb|EFL00271.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 234

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L+L   G++ +EIA++L +SV TV +++ +   KL   NR +    A   
Sbjct: 172 DKLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNRHELTRWAAAR 231

Query: 232 GYI 234
             +
Sbjct: 232 RLV 234


>gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300075725|gb|ADJ65124.1| nitrate/nitrite response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+           +     LT RE + +     G +++EIA  L ++  TV  ++ +
Sbjct: 134 LVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEVAESTVKIHVQN 193

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL   +R+Q    A+  G 
Sbjct: 194 LLRKLQLSSRVQIAVYAVEHGL 215


>gi|226363539|ref|YP_002781321.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226242028|dbj|BAH52376.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 224

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 16/155 (10%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF---------------- 138
           E    S    + RL         +   +          +                     
Sbjct: 66  ELGDGSGVDATRRLLERHPALRVLVVTMHEDDESLVASVRAGARGYLVKGADPGEVERAV 125

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +AN  +I       + ++      +   +    LT+RE   L L   GY +  I+ +L
Sbjct: 126 RAVANGEMILGAAVAARAMSFMAASRRMEPAVFPELTDREREVLDLVARGYDNASISRRL 185

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            LS  TV  ++ +   KL   +R  AI +A   G 
Sbjct: 186 VLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 220


>gi|119776080|ref|YP_928820.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768580|gb|ABM01151.1| transcriptional regulator, LuxR family [Shewanella amazonensis
           SB2B]
          Length = 221

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 12/162 (7%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG-FHKNGYVIFTS 136
              ++  +P++   +     +     L       L   A +   +R   F      +  +
Sbjct: 56  AALDNKGIPLLASRLTPHVPV----ALYQVERHSLDQEAALLLGIRGLLFADQRMDLMLT 111

Query: 137 EFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERETSCLQLAGDGY 189
               +  + +        ++    +       ++     +  ++LT RE + +QL G G 
Sbjct: 112 GLRKMVADELWFDRPLISKMFRRLVNKLDTNSDVSPDAMAMLQSLTGRECTIIQLVGSGA 171

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            ++EIA++L +S HTV A++ S   K  + NR++ +  A   
Sbjct: 172 RNKEIADRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQSH 213


>gi|111223755|ref|YP_714549.1| transcriptional regulator [Frankia alni ACN14a]
 gi|111151287|emb|CAJ63001.1| Probable transcriptional regulator [Frankia alni ACN14a]
          Length = 252

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 15/168 (8%)

Query: 66  NILIETYGDDFLFH----FNSGLLPI-IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             L        + H     +   L +  W S++E    E+       +   +  +  IA 
Sbjct: 73  VTLRNMRRHPLIRHYVKTSDRRPLTVTDWISLREWKSSEAGS----DIYAAVNFYDHIAI 128

Query: 121 PVRLGFHKNGYVIFTSEF---LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           P+              +         E+I+  H     +      L ++R +    LT  
Sbjct: 129 PLDSPPGTMRSFALGRDDGPFTDQERELILALHPLLIAMDGKARRLQQQRPTP---LTIT 185

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           E   + L  DG TS +I  +L  S  TV  +LGS   KL   NRI A+
Sbjct: 186 EGRIMHLVRDGLTSRQIGIRLNRSHRTVEKHLGSIYGKLGVTNRIDAV 233


>gi|300782049|ref|YP_003762340.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791563|gb|ADJ41938.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +SA R +T+RE   L L   G +++EIA  L +S  T   ++     K+ A +R Q +  
Sbjct: 150 TSAVREITDREREVLGLVAGGMSNDEIAAHLVISTATARTHVSRIMTKIGARDRAQLVVL 209

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 210 AYESGLV 216


>gi|238024126|ref|YP_002908358.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878791|gb|ACR31123.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 520

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLS 201
           + +A      +I     + +  +  A      LT RE    +    G + ++IA+ L LS
Sbjct: 409 MQDASWFSRTLIEKLANVRRANAPDAGAHLSDLTARECDVFEQLCKGLSDKDIAKALELS 468

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             TV  ++ +   KLD  +R +AI  A   G
Sbjct: 469 PATVRNHVATIYAKLDVHSRAEAIVWAQTRG 499


>gi|229162147|ref|ZP_04290117.1| Two-component protein Kinase [Bacillus cereus R309803]
 gi|228621304|gb|EEK78160.1| Two-component protein Kinase [Bacillus cereus R309803]
          Length = 557

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 470 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRN 529

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 530 YASTAYTKLGVRNKEEAVQKALEIGII 556


>gi|256377110|ref|YP_003100770.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921413|gb|ACU36924.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 223

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +       E  ++ ++    LTERE   ++L   G T++E+A +L L V TV  +LG
Sbjct: 136 LLAHLAPERGAERAEESAALVEPLTERELEVVRLVALGRTNDEVAGELHLGVATVKTHLG 195

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +A  KL A NR++  A A R G +
Sbjct: 196 NAQRKLAARNRVEVAAWAWRTGLV 219


>gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 226

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +   LT  ET  +     G ++ EIAEKL +S  T+ +++ +   K    NR +    A
Sbjct: 161 PSHVELTPTETKVVSFVAQGLSNREIAEKLNVSQRTIESHVSNMLNKTSLNNRTELARWA 220

Query: 229 IRFGYI 234
           +    +
Sbjct: 221 MDSRLV 226


>gi|85708084|ref|ZP_01039150.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           NAP1]
 gi|85689618|gb|EAQ29621.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           NAP1]
          Length = 141

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L     G +++EIA  LG+S +TV  ++ +  +KL+   R +A+  A    
Sbjct: 79  GLTRRECEILDHLAKGASNKEIARSLGVSPNTVKTHIANLYMKLEVTGRGKAVEAARSLA 138

Query: 233 YI 234
            I
Sbjct: 139 LI 140


>gi|84494899|ref|ZP_00994018.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649]
 gi|84384392|gb|EAQ00272.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649]
          Length = 937

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKNGYVIFTSEFLMLANEVIIEA 149
            + +  +     +  +R    +    G    V         ++  +            EA
Sbjct: 786 GLLDSVLGREGAEDLLRSAVAMDQRMGAPLFVGYDLAAIVDHLRRSGAPTRRIEAARREA 845

Query: 150 HGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                Q+ T  L               LT RE   L+L  +G ++ +++E+L ++ +TV 
Sbjct: 846 VATASQLRTPRLRGRVGLDGPHSGPEGLTFRELEVLRLVAEGLSNRQLSERLFITENTVT 905

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ S   K    NR  A   A   G +
Sbjct: 906 NHVRSILQKTGVANRTMAARYAAEHGLL 933


>gi|297194274|ref|ZP_06911672.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152196|gb|EDY64473.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 256

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTE 176
           +R G             ++ A  ++ E     +      L      S+A        LTE
Sbjct: 136 LRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRSLAAEYGNSAARTAMERAALTE 195

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE + L+L   G ++ EIA +L +   TV  ++ +   KL A +R QA+  A   G++
Sbjct: 196 REAAVLRLMARGLSNSEIAAQLFVGTETVKTHVSAVLAKLGARDRTQAVIAAYESGFV 253


>gi|153825634|ref|ZP_01978301.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|149740664|gb|EDM54771.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
          Length = 214

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
           RL    L   G    +       G++       ++  +  +  H +   +          
Sbjct: 89  RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           ++ A  +LT RE   L+    G ++ +IAE L +S  TV ++L     KL+  NR++AIA
Sbjct: 148 QAQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207

Query: 227 K 227
            
Sbjct: 208 W 208


>gi|24372453|ref|NP_716495.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24346436|gb|AAN53940.1|AE015531_6 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1]
          Length = 255

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 16/161 (9%)

Query: 78  FHFNSGLLPIIWQSIQEETVIE----SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              ++  +P++   +     +         L       L    G+ F       +   ++
Sbjct: 90  AALDNKGIPLLASRLVPHIPVALYQVERNSLDQESAMLLGIR-GLLFT-----DQRMDLM 143

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGD 187
            T    M+A+E+  +             +L  +    A        LT RE + +Q    
Sbjct: 144 LTGLRKMVADELWYDRTLLSKMFRRVVQKLDGQNDMPADTVAMLQALTSRERTIIQFVSS 203

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           G  ++EIA +L +S HTV A++ S   K  + NR++ +  A
Sbjct: 204 GARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 244


>gi|298247093|ref|ZP_06970898.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297549752|gb|EFH83618.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 202

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +RE   L+L  +G +++EIA+ L ++  T+  YL     KL+A +R QAI  A + G+
Sbjct: 141 LNKRELEVLRLLAEGRSNQEIADTLIVAKSTIKWYLKQIYSKLNAHSRTQAIVCARQIGF 200

Query: 234 I 234
           +
Sbjct: 201 L 201


>gi|298250649|ref|ZP_06974453.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548653|gb|EFH82520.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 11/122 (9%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
                     R    +   +        L  EV           +               
Sbjct: 100 GVKGYWLKSARSSDIRQAVLDVADNKRTLDPEVREVLEKYEGHALIQV-----------E 148

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE + L+L   G  + EIA++L +S+ TV AYL S   KL   +R + IA A + G
Sbjct: 149 RLTNREFAVLRLIIQGTRNSEIAQRLAISIKTVEAYLTSLYGKLGVQSRAEVIALAQKQG 208

Query: 233 YI 234
            +
Sbjct: 209 LL 210


>gi|271969439|ref|YP_003343635.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512614|gb|ACZ90892.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                V    ++ F  R +         LT RE   ++L  +G ++++IA KL +S  T 
Sbjct: 125 LLSPSVTRRVVQQFAHRPAPVSGDGLAVLTVREREVVRLVAEGLSNDQIAAKLVISPLTA 184

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++  A +KL+A +R Q +  A   G +
Sbjct: 185 KTHVTRALMKLNARDRAQLVILAYETGLV 213


>gi|225028039|ref|ZP_03717231.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353]
 gi|224954639|gb|EEG35848.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353]
          Length = 223

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+ E   +Q  G G +++EIA +L LS  TV  YL S   KL+  +R Q    A++
Sbjct: 154 TEELTKTEWRVIQKIGCGMSNKEIASELALSEGTVRNYLSSVLSKLELRDRTQLAIWAVQ 213

Query: 231 FG 232
            G
Sbjct: 214 TG 215


>gi|167763457|ref|ZP_02435584.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC
           43183]
 gi|167698751|gb|EDS15330.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC
           43183]
          Length = 217

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              V        + R      LT RE   L+   +G  ++EIA++L +S +TV+ +    
Sbjct: 134 AEHVRAQMRRSDEGRR---EELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHL 190

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KLDA N    I  AI  G I
Sbjct: 191 MDKLDARNVADLIMTAISKGII 212


>gi|126740186|ref|ZP_01755875.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126718641|gb|EBA15354.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 215

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + G   F          +      A  +++  F+++ K +     +L+ +E + L+  
Sbjct: 99  AMQAGAAGFAPRSGEAEGLLETCLDVAAGKMVFPFIDVRKMQQDPIHSLSRKERAILESL 158

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             G ++ E+++ L +S +TV  +L +   KL   NR QAIA 
Sbjct: 159 AKGMSNRELSKALQISTNTVKFHLSNIYEKLSVKNRAQAIAY 200


>gi|317503562|ref|ZP_07961584.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315665304|gb|EFV04949.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 212

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            I +    C ++    L   + +      LT  ET  L+    G T+ EIAEK   S HT
Sbjct: 117 AIHDRRFICQRMAEMLLAPAQPQLE-HVKLTPTETEILKDIALGMTTREIAEKRFSSFHT 175

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           VN +  +   KL      +A   A+R G I
Sbjct: 176 VNTHRKNIFRKLGVNTIHEATKYALRAGLI 205


>gi|297197400|ref|ZP_06914797.1| LuxR family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|297146707|gb|EDY61643.2| LuxR family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 995

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 37/68 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +  A  LT RE   L+L   G ++ +I E+L ++  T + ++ +   KL A +R +A+A
Sbjct: 920 AAPTASPLTAREQDVLRLLARGRSNRQIGEELFITGKTASVHVSNILAKLGAASRTEAVA 979

Query: 227 KAIRFGYI 234
            A R G I
Sbjct: 980 VAYREGLI 987


>gi|218898278|ref|YP_002446689.1| Two-component protein Kinase [Bacillus cereus G9842]
 gi|218542184|gb|ACK94578.1| Two-component protein Kinase [Bacillus cereus G9842]
          Length = 595

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 508 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 568 YASTAYTKLGVRNKEEAVQKALEIGII 594


>gi|256395183|ref|YP_003116747.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361409|gb|ACU74906.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               +      + A E ++             +          +   + LTERE   L L
Sbjct: 109 EPADLLRGLRAVAAGEALLAPSVTRRLIAEFAVRSKRTGPNPAAEQIKALTEREREVLAL 168

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              G ++EEIA++L LS  T   ++  + VKL A +R Q +  A   G 
Sbjct: 169 VAAGLSNEEIADRLVLSPLTAKTHVSRSMVKLGARDRAQLVVLAYESGL 217


>gi|111024836|ref|YP_707256.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|29647414|dbj|BAC75412.1| response regulator [Rhodococcus sp. RHA1]
 gi|110823815|gb|ABG99098.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 209

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L+ RE   ++L   G T+ EIAE+L +S  TV ++  S   KL    R +    A   
Sbjct: 146 DSLSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDA 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLL 208


>gi|333009595|gb|EGK29047.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-272]
          Length = 216

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|332978107|gb|EGK14844.1| nitrate/nitrite response regulator protein NarL [Psychrobacter sp.
           1501(2011)]
          Length = 219

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 14/152 (9%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----------EFLM 140
           + +     S      ++         + F V          +              E + 
Sbjct: 63  LDQNMPGLSGLDTVKQIRDQGNQAKILMFTVSDSGDDIHNALKLGVNGYLLKDMQPEQVA 122

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEK 197
           L     +         +   L    +  +      NLT RE   +++   G +++ I  +
Sbjct: 123 LDIRKALRGELVVSSRLAAVLAQALRTPNLDDIVSNLTSRELQVVKMIAKGQSNKMIGNE 182

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           LG+S  TV  ++     K +   R+     A+
Sbjct: 183 LGISESTVKVHVKHILNKTNLRTRVDVAVWAV 214


>gi|331657961|ref|ZP_08358923.1| regulatory protein SdiA [Escherichia coli TA206]
 gi|331056209|gb|EGI28218.1| regulatory protein SdiA [Escherichia coli TA206]
          Length = 87

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 149 AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                 + +   + L  +   +   N ++RE   L+   +G TS EIA  L +S +TVN 
Sbjct: 1   MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 60

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   K++A N+ Q    A   G I
Sbjct: 61  HQKNMQKKINAPNKTQVACYAAATGLI 87


>gi|257790333|ref|YP_003180939.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|317489781|ref|ZP_07948280.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|257474230|gb|ACV54550.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|316911127|gb|EFV32737.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 213

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173
           +RLG          +        V+        +V+     L  +  + A N        
Sbjct: 94  LRLGAKGYLIKQEVATIAPALRTVMAGQSVLGGEVLDRMDVLMSRGPACAENAPGGEMRS 153

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LTERE++ ++L  +G  ++EIA +L LS  TV  ++ +   KLD  NR Q + +  R
Sbjct: 154 GLTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211


>gi|118617914|ref|YP_906246.1| two component transcriptional regulatory protein DevR
           [Mycobacterium ulcerans Agy99]
 gi|183981531|ref|YP_001849822.1| two-component transcriptional regulatory protein DevR
           [Mycobacterium marinum M]
 gi|118570024|gb|ABL04775.1| two component transcriptional regulatory protein DevR
           [Mycobacterium ulcerans Agy99]
 gi|183174857|gb|ACC39967.1| two-component transcriptional regulatory protein DevR
           [Mycobacterium marinum M]
          Length = 216

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                      +   L    +R      LT++E + L L  +G T+++IA+++ L+  TV
Sbjct: 122 RSLLDNRAAAALMSRLRGVVERPDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             Y+     KL    R QA   A   
Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFAAEL 207


>gi|297156704|gb|ADI06416.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 195

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   L L  +G ++ EIA +L +   TV  ++     K    +R QA+  A
Sbjct: 118 PLPDGLTPREAEVLTLVAEGLSNAEIARRLHIGPATVKTHIA----KAGVRDRAQAVRYA 173

Query: 229 IRFGY 233
            R G 
Sbjct: 174 YRSGI 178


>gi|290961078|ref|YP_003492260.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650604|emb|CBG73720.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS     LT RE   L     G +++EIAE+L +S  TV  ++     KL A +R Q + 
Sbjct: 156 RSERLATLTGREREVLVQVAGGLSNDEIAERLEVSPLTVKTHVNRGMAKLGARDRAQLVV 215

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 216 FAYESGLV 223


>gi|302552866|ref|ZP_07305208.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470484|gb|EFL33577.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 226

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDG 188
           +      + + E ++        +    L               +LT RE   + LA +G
Sbjct: 114 LLAGLRTVASGESLLSPVATRSLITRFLLAPAPGTHLAPPERLADLTVREREVMALAAEG 173

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIAE L LS  TV  ++  A  KL+A +R Q +  A + G +
Sbjct: 174 RSNTEIAEDLTLSPLTVRTHIHRAMTKLNARDRAQLVVIAYQTGLV 219


>gi|229145796|ref|ZP_04274176.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|296503725|ref|YP_003665425.1| two-component protein kinase [Bacillus thuringiensis BMB171]
 gi|228637627|gb|EEK94077.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|296324777|gb|ADH07705.1| two-component protein kinase [Bacillus thuringiensis BMB171]
          Length = 592

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|253991535|ref|YP_003042891.1| transcriptional regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638413|emb|CAR67035.1| transcriptional regulator of sqaz gene cluster [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782985|emb|CAQ86150.1| putative transcriptional regulator [Photorhabdus asymbiotica]
          Length = 236

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            +K+ ++ EL      + N I   +F  Y+I     +P   +    + N   ++    + 
Sbjct: 12  IQKAKTIPELE---KKVLNAINYLDFEFYSIYQEEKYPFTTKKYVLITNLHTETMGNYDK 68

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D  +       +P I+     +          +           I+  ++    
Sbjct: 69  NDNHDSDQLMNGDFIFSIPSIYDEKTSKH-----TDFMIEKPNENEIKNIISIKIKSYHG 123

Query: 128 KNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           +        +   +++  I+            C +   +      K       L+ RE  
Sbjct: 124 ERSIFSVARKEGPISHNEILNKAGMLGILANECIKTFNNLKNKEDKIIVPT--LSTREVE 181

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            ++   +G TS EIA  L +S  TVN ++ +   KL   N
Sbjct: 182 VIRWTCEGKTSAEIANILDISTRTVNFHINNIMEKLVVPN 221


>gi|83748008|ref|ZP_00945038.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551]
 gi|207738688|ref|YP_002257081.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609]
 gi|83725310|gb|EAP72458.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551]
 gi|206592056|emb|CAQ58962.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609]
          Length = 252

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 62/209 (29%), Gaps = 13/209 (6%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             ++  +  R+ A    +                +Y  +                +  + 
Sbjct: 28  ESVRPILNHRHLA--CGHGRTTSSGVAMDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWL 85

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           S   P+ +      +  E +  + +            A  V    +  G          +
Sbjct: 86  STRRPVYF---DAASPWEGTDPVWLEKFVKHDLRNCAADAVFDEANCVGTYFSFHALPTV 142

Query: 142 A--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                     ++    HGA  + +       ++ S A   LTERE     L G G ++ E
Sbjct: 143 EEGCLDATLRDLTPALHGALLRAVASIERDLQQASQALATLTEREREVALLIGQGRSNAE 202

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           IA+ +  S  TV  YL S   K    NR+
Sbjct: 203 IAQVVCKSESTVKHYLSSIMDKTGCENRV 231


>gi|238062419|ref|ZP_04607128.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237884230|gb|EEP73058.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 150

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAG 186
              +     ++ A E ++       ++I +F    +      R L   TERE   L L  
Sbjct: 38  PAELLAGIRVVAAGEGLLAPT-VTRRLIDEFARRPEPARPLPRRLEGVTEREREVLMLIA 96

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ E+AE+L LS+ TV  ++G    KL   +R Q +  A   G +
Sbjct: 97  RGLSNAELAEQLSLSLPTVKTHVGRLLTKLAVRDRAQLVIVAYETGLV 144


>gi|324111848|gb|EGC05828.1| luxR family protein regulatory protein [Escherichia fergusonii
           B253]
          Length = 200

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A    +  +     ++    D+L + +  S   + L+ R+   L +   G +++E
Sbjct: 102 PRDSGAETFALALNSVVMGMMFLPGDWLSMPETESRDIKTLSVRQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195


>gi|320086683|emb|CBY96454.1| Nitrate/nitrite response regulator protein homolog [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 215

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG-------AC 153
              L    +    I   V         +I              EV++EA           
Sbjct: 71  LNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVF 130

Query: 154 YQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ 
Sbjct: 131 SDRVNEYLRERERFGAQEDPFRILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIR 190

Query: 211 SATVKLDAVNRIQAIAK 227
           +    L+  +R+ A   
Sbjct: 191 NLLRNLNVRSRVAATIL 207


>gi|294630991|ref|ZP_06709551.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292834324|gb|EFF92673.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 244

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 126 IRGGARGYVTKTITGADLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 185

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 186 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 244


>gi|160938544|ref|ZP_02085898.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438531|gb|EDP16289.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC
           BAA-613]
          Length = 211

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   +   K ++  A +LT RE   ++L   G  + EIA  L L+  TV   +     KL
Sbjct: 133 MRRQMAPGKIKADMAGDLTPRERDIMRLVARGMDNREIAGALFLAEGTVRNNISRLLEKL 192

Query: 217 DAVNRIQAIAKAIRFGY 233
              +R Q    A++   
Sbjct: 193 KLKDRTQLAVFAVKHNL 209


>gi|116625514|ref|YP_827670.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228676|gb|ABJ87385.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 191

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   LQ+  +G T++EIA  L LSV+TV+A+ G    KL+  +  + +  A+
Sbjct: 126 PIDLLSSREREVLQMLAEGKTNKEIAVVLNLSVYTVDAHRGRIMEKLNLHSINELVRFAV 185

Query: 230 RFGYI 234
           R G +
Sbjct: 186 RNGLV 190


>gi|121605575|ref|YP_982904.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120594544|gb|ABM37983.1| transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 262

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 17/131 (12%)

Query: 114 PFAGIAFPVRLGFHKNG-----YVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK 166
                +  +     + G     YV+ +   +   +    I          +    +L ++
Sbjct: 124 LRNMRSVLIHGMRDERGQYECLYVLLSVHEIPAESASGAIKVLMPFIDSALRQVAQLPQQ 183

Query: 167 RSSAARN----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   A++          L+ERE   +     G T+ EI   L +S  TV  ++     KL
Sbjct: 184 QKPFAKSPRVVQEEIFGLSEREIQIMDWVAMGKTNSEIGSILNISGFTVKNHMQRIFQKL 243

Query: 217 DAVNRIQAIAK 227
           +  NR QA++K
Sbjct: 244 NVFNRAQAVSK 254


>gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 319

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVA 309


>gi|282801728|gb|ADB02831.1| AzicR2 [Kibdelosporangium sp. MJ126-NF4]
          Length = 214

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L   V   A G      +    L  + R+SAA  L++RE   L L
Sbjct: 97  AGATGYLLKDAPRDELLRAVRATARGEAVLAPSAAALLMSRVRASAAGPLSQRELEVLHL 156

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G T+ E A +L L+  T+ ++L +   KL   +R  A+      G +
Sbjct: 157 VAEGATNREAAARLFLTEATIKSHLLNIYGKLGVSDRAAAVTAGFNRGLL 206


>gi|315498474|ref|YP_004087278.1| two component transcriptional regulator, luxr family [Asticcacaulis
           excentricus CB 48]
 gi|315416486|gb|ADU13127.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 240

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 20/116 (17%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----------LTER 177
            G V F  +   L             + I+D LE     +  A             LT  
Sbjct: 130 FGAVGFIGKDQPLPR---------MQEAISDALEGRISDTPPADPEVDTVAAKVADLTPT 180

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +   L     G  +++IA  L +S  TV A++ +   KLD  NR QA+  A   G 
Sbjct: 181 QLRVLLGVLAGRLNKQIAYDLSISEATVKAHMTAIMRKLDVQNRTQAVLAARALGI 236


>gi|226304850|ref|YP_002764808.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183965|dbj|BAH32069.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 219

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E+ ++   +   L+ RE   L L   G +   IA +L L+  TV  ++     KL   +R
Sbjct: 146 EVRRRSEPSGPTLSAREREVLGLIAQGASIPTIASQLFLAPSTVKTHVQRLYEKLGVNDR 205

Query: 222 IQAIAKAIRFGYI 234
             A+A A+R G +
Sbjct: 206 GAAVAAAMRQGLL 218


>gi|126653823|ref|ZP_01725686.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905]
 gi|126589660|gb|EAZ83797.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905]
          Length = 229

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 11/232 (4%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALD-FPRRQQLICELHNYDLDSGDIPN--I 67
            S+L  +  R   +QN        ++ +   LD FP +   +         +  I     
Sbjct: 1   MSNLYTIQKRFDTVQNYSNHEELLIHILQVYLDSFPIKDAYLLRYSPIGFVAEGIIFLNE 60

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS-----VRLEGGLLPFAGIAFPV 122
              ++  +      S   PII+ +I E+     +G        ++        A +  P+
Sbjct: 61  EGGSHIGEIREEIRSF--PIIYSAIVEKKAKFCTGMDYLKNISIKYSISSQNNAFLIVPI 118

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
            +G +  GY+  T   +    E +++     +  +   L +  +       L++RE   +
Sbjct: 119 FIGHYVFGYICSTQIDMDKITEKLLD-DFTAFGNVIGQLIIQARDHKKGSILSKRELEVM 177

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    G +++E+A+ + LS  T+N Y+ SA  KL A NR  AI+   + G I
Sbjct: 178 RQIALGDSTKEMADFMNLSELTINQYVKSAIKKLQAKNRTHAISILYQEGVI 229


>gi|21224169|ref|NP_629948.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|3036890|emb|CAA18523.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 229

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RET  L L  +G T+ +IA +L +S  TV  ++ +   K    +R QA+  A   
Sbjct: 162 DGLTTRETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGK 221

Query: 232 GYI 234
           G +
Sbjct: 222 GLV 224


>gi|158313806|ref|YP_001506314.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158109211|gb|ABW11408.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 216

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 35/83 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              A    +   L        A+  L+ RE   L L  +G T+ +IA +L LS  TV  Y
Sbjct: 132 LDPAVTARVLARLREGTDVGRASAVLSTREREILVLIAEGLTNRQIAGRLHLSEKTVKNY 191

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           + S   KL   +R QA   A R 
Sbjct: 192 VSSILDKLGLSSRTQAAVYAARR 214


>gi|126174167|ref|YP_001050316.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|125997372|gb|ABN61447.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
          Length = 214

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  + +IAE L + + TV  +  +   KL+A N  + +    R G 
Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214


>gi|124266090|ref|YP_001020094.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258865|gb|ABM93859.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 933

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 72/225 (32%), Gaps = 12/225 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +    +H +   ++   +    +  A                    G +   +  +
Sbjct: 718 DSRDDAPHWIH-LAEDVEGSGYGWIRLAIARHDHADAAQRIARERARQT-GRVYRDIKLS 775

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK--N 129
             +  L     G      + +++   +   G+    L        G+   +R  +     
Sbjct: 776 VLETLLQQ-RMGARNAAHRCLRKALQLGRRGRYVRCLLDEG---DGVIELLREAYQNLLR 831

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G+            + I        +     L      ++    L+ERE   L+   DG 
Sbjct: 832 GHEPGGGTGTDPDRDYIELL----LEASGTDLGRQAAGNALTEALSEREKEMLRFLLDGT 887

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+ EIA +L +S +TV  +L +   KL   NR+QAI  A     I
Sbjct: 888 TNREIAGRLFVSENTVKFHLKNIYSKLGVGNRLQAINTARALRLI 932


>gi|312621234|ref|YP_004022847.1| LuxR family transcriptional regulator [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201701|gb|ADQ45028.1| transcriptional regulator, LuxR family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 74

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT+RE   ++L   GY+++EI+  L +S  TV  Y+    +KL+A +R++  A 
Sbjct: 10  ELTKREKEIIKLIAKGYSNKEISSFLNISEGTVKTYIKIIMLKLNARSRVEIAAY 64


>gi|296169094|ref|ZP_06850753.1| LuxR family DNA-binding response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896214|gb|EFG75876.1| LuxR family DNA-binding response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 223

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 34/83 (40%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   +   L    +R      LTE+E + L L  +G T+ +IA ++ L+  TV  Y
Sbjct: 125 LDNRAAAALMAKLRGAAEREDPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNY 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           +     KL    R QA   A + 
Sbjct: 185 VSRLLAKLGMERRTQAAVFASKL 207


>gi|253773935|ref|YP_003036766.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161147|ref|YP_003044255.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B str.
           REL606]
 gi|300928412|ref|ZP_07143945.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|242376846|emb|CAQ31561.1| CsgD transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253324979|gb|ACT29581.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973048|gb|ACT38719.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli B str. REL606]
 gi|253977262|gb|ACT42932.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BL21(DE3)]
 gi|300463575|gb|EFK27068.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|323962640|gb|EGB58218.1| luxR family protein regulatory protein [Escherichia coli H489]
 gi|323973370|gb|EGB68559.1| luxR family protein regulatory protein [Escherichia coli TA007]
          Length = 216

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|15597787|ref|NP_251281.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218891329|ref|YP_002440196.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235577|ref|ZP_04928900.1| hypothetical protein PACG_01504 [Pseudomonas aeruginosa C3719]
 gi|254241024|ref|ZP_04934346.1| hypothetical protein PA2G_01705 [Pseudomonas aeruginosa 2192]
 gi|9948655|gb|AAG05979.1|AE004688_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|66957912|gb|AAY59074.1| transcriptional regulatory protein [Pseudomonas sp. M18]
 gi|126167508|gb|EAZ53019.1| hypothetical protein PACG_01504 [Pseudomonas aeruginosa C3719]
 gi|126194402|gb|EAZ58465.1| hypothetical protein PA2G_01705 [Pseudomonas aeruginosa 2192]
 gi|218771555|emb|CAW27323.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 268

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             +       N+A    + +                           +    D F     
Sbjct: 32  QTLGQFAPVDNWAALIFSDSSPLILSFMEEEREEVEPDPLISRYITGLYL-QDPFYQVSR 90

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           +     ++      +    + +         +    + + V L   +   +         
Sbjct: 91  NCRRGGLFHLADIVSEDFETTEYYNTYFAHYVVTDEVQYNVPLDGERTLCLSL-GSESRF 149

Query: 142 ANEVIIEAHGACYQV---------ITDFLELFKKRSSAAR-----------NLTERETSC 181
             E I         V           D +    K  +AA             LT RE+  
Sbjct: 150 GAEQIALFELLRPWVIALMKKRIHFEDAVREEAKPIAAAEVEVQPWRGLISPLTARESDV 209

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           ++L  DGY+++EIA++L LS+ T+  +      KL+  +  +
Sbjct: 210 IRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLNVKSHSE 251


>gi|319644893|ref|ZP_07999126.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2]
 gi|317392702|gb|EFV73496.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2]
          Length = 214

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L+    GY ++EIA+KL +SV TV  +  +   KLD  ++ + I  AI
Sbjct: 146 PTSVLTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAI 205

Query: 230 RFGYI 234
           +  Y+
Sbjct: 206 KNKYL 210


>gi|297516127|ref|ZP_06934513.1| DNA-binding transcriptional regulator CsgD [Escherichia coli OP50]
          Length = 114

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 54  LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 108


>gi|209548992|ref|YP_002280909.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534748|gb|ACI54683.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 206

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE   + L   G +++ I  +L L   TV  ++     KL   NR +A  +  + 
Sbjct: 148 GLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQILSKLGVSNRTEAALQWRQH 206


>gi|52081142|ref|YP_079933.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52786522|ref|YP_092351.1| hypothetical protein BLi02787 [Bacillus licheniformis ATCC 14580]
 gi|52004353|gb|AAU24295.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52349024|gb|AAU41658.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 214

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L+    GY ++EIA+KL +SV TV  +  +   KLD  ++ + I  AI
Sbjct: 146 PTSVLTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAI 205

Query: 230 RFGYI 234
           +  Y+
Sbjct: 206 KNKYL 210


>gi|313497133|gb|ADR58499.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 905

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 42/87 (48%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A     +++     +    +     L+ RE + L+L   G ++++I+E+L +S+HTV  
Sbjct: 818 AACPVQAELLKHLPPVPVASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKT 877

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +      KL    R QA+AKA   G +
Sbjct: 878 HASHINSKLGVERRTQAVAKAKFLGLL 904


>gi|304390336|ref|ZP_07372289.1| possible response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326092|gb|EFL93337.1| possible response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 221

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +   LT RE   L L  +  T+ +IA +L +S +TV  ++ S   K DA +R  A+A  
Sbjct: 155 PSDTVLTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGAVAHG 214

Query: 229 IRFGYI 234
           IR G I
Sbjct: 215 IRQGII 220


>gi|300856053|ref|YP_003781037.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300436168|gb|ADK15935.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 224

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            NL++RE   L     GY+++EI ++L +S  TV  Y  +   K++  +R+ A   AI  
Sbjct: 153 DNLSKREIEVLSKISKGYSNKEIGKQLYISEKTVKNYATNLFKKINVDDRVHAAIVAIEN 212

Query: 232 GY 233
             
Sbjct: 213 NI 214


>gi|229820935|ref|YP_002882461.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566848|gb|ACQ80699.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 220

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +  +  R LT RE   L L   G ++ EIA +L ++  TV  ++ +   KL   +R+QA
Sbjct: 147 PRTEAELRVLTSREREVLSLIARGLSNAEIAGRLFVTEGTVKGHVSAILAKLGLRDRVQA 206

Query: 225 IAKAIRFGYI 234
           +  +   G +
Sbjct: 207 VIFSYECGLV 216


>gi|325066389|ref|ZP_08125062.1| two component LuxR family transcriptional regulator [Actinomyces
           oris K20]
          Length = 234

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             +           L+ERE   L L  D  T+++IA +L +S  TV  ++ +   KL   
Sbjct: 160 HAQQPPSPLPHGVTLSEREREVLTLVVDAKTNKQIATRLRVSEATVKTHVSAIIAKLGVQ 219

Query: 220 NRIQAIAKAIRFGYI 234
           +R+ A   A++   +
Sbjct: 220 DRVGAAVYALQHNLV 234


>gi|238752983|ref|ZP_04614443.1| Two-component response regulator [Yersinia rohdei ATCC 43380]
 gi|238708805|gb|EEQ01063.1| Two-component response regulator [Yersinia rohdei ATCC 43380]
          Length = 210

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 NHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|254467347|ref|ZP_05080758.1| nitrate/nitrite response regulator protein, putative
           [Rhodobacterales bacterium Y4I]
 gi|206688255|gb|EDZ48737.1| nitrate/nitrite response regulator protein, putative
           [Rhodobacterales bacterium Y4I]
          Length = 204

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V       G   F      +   +      A  +++  FL++   ++     L+ RE + 
Sbjct: 84  VPRKAMSAGAAGFAPRSSAVDGLLDTCLAVAAGKMVFPFLDVRGLQTDPIEQLSRRERTM 143

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+    G T++E++++L +S +TV  +L +   KL   NR QAIA 
Sbjct: 144 LEALSKGLTNKELSKELEISTNTVKFHLSNLYEKLSVKNRAQAIAF 189


>gi|198275681|ref|ZP_03208212.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135]
 gi|198271310|gb|EDY95580.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135]
          Length = 202

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            + +  ++ S   +L++RE   +     G T++EIAEKL +SVHTV  +  + T KL   
Sbjct: 119 LMNVANEKESDQDSLSQREKEIVGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIH 178

Query: 220 NRIQAIAKAIRFGYI 234
           +       AI    +
Sbjct: 179 SAAGLTIYAIVNKLV 193


>gi|146299747|ref|YP_001194338.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146154165|gb|ABQ05019.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 213

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K+ S    L+ RE   L L    Y + EIAEK  +S++TVN +  +   KL+A N    
Sbjct: 143 EKQVSNLTELSSREKEILVLIAHEYNTAEIAEKTFISLNTVNTHRRNLLSKLNAKNTAGL 202

Query: 225 IAKAIRFGYI 234
           +  A+  G +
Sbjct: 203 VKYAVENGLV 212


>gi|90407707|ref|ZP_01215886.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp.
           CNPT3]
 gi|90311176|gb|EAS39282.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp.
           CNPT3]
          Length = 211

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           NLT+RE   LQ    G +++EI+  L +S  TV  ++ S   KL A +R++A  
Sbjct: 151 NLTKRERQILQEIAKGQSNKEISINLHISEGTVKVHVKSLLKKLQAKSRVEAAI 204


>gi|297197881|ref|ZP_06915278.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|297146901|gb|EDY61655.2| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 256

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 5/161 (3%)

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
              +   P+  + +   +   S     +     +    GI  P          V  +   
Sbjct: 88  AGRADRAPVTARRVAGRSWSGSPTARLLDDLLDVDHVLGIPLPQSTTPVTGCLVYRSGRD 147

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
                  + E        +    +L ++ ++ +       LT RET+ L L GD  T+  
Sbjct: 148 FTDDELRLAEQLQPLLAAVEQQRQLLRRLNAPSEEAADLALTPRETTVLLLLGDALTAVS 207

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I  +LG+S  TV+ ++ +   KL   +R+  +  A R G +
Sbjct: 208 IGRRLGISERTVHKHIANIYRKLGTHDRVSTVLHAQRLGLV 248


>gi|258655128|ref|YP_003204284.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258558353|gb|ACV81295.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 982

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 16/188 (8%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107
           +    +L                               P +W++   E       +    
Sbjct: 803 RPRGGQLGPEGRGWVARARAE--------YSRLIGEPDPDLWRAAVTEFAYGYRYE---E 851

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KK 166
                     +A        ++G  +  S  L  A ++      A    +     L    
Sbjct: 852 ARSRWRLAEALA----ARGDRSGATVEASTALRAAQDMGARPLAAALIDLGRRARLDLPG 907

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +S+   LT RE   L+L   G T+ +I E+L +S  TV+ ++ +   KL    R +A+A
Sbjct: 908 STSSGGVLTGREEEVLRLVAAGLTNRQIGERLYISGKTVSVHISNVLGKLGVGGRAEAVA 967

Query: 227 KAIRFGYI 234
            A R G +
Sbjct: 968 VAHRRGLL 975


>gi|229083091|ref|ZP_04215495.1| Two-component protein Kinase [Bacillus cereus Rock4-2]
 gi|228700249|gb|EEL52831.1| Two-component protein Kinase [Bacillus cereus Rock4-2]
          Length = 592

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  +AA  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPQSKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+  A+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQMALEIGII 591


>gi|269925757|ref|YP_003322380.1| two component transcriptional regulator, LuxR family [Thermobaculum
            terrenum ATCC BAA-798]
 gi|269789417|gb|ACZ41558.1| two component transcriptional regulator, LuxR family [Thermobaculum
            terrenum ATCC BAA-798]
          Length = 1648

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 167  RSSAARNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            RSS+ + LT+RE   LQL  +G  ++++++ +LG+S HTV  +L +   KL   +R Q +
Sbjct: 1578 RSSSLQMLTDREQEILQLLVNGVTSTKDLSRQLGVSEHTVKYHLRNILSKLHLQSRAQVV 1637

Query: 226  AKAIRFGY 233
            A A++ G 
Sbjct: 1638 AWAVQHGL 1645


>gi|167646647|ref|YP_001684310.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167349077|gb|ABZ71812.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 222

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   +QL  +  +++ IA  L +SV TV ++ G+   KL A +    +  AIR
Sbjct: 157 AETLTTRELLIVQLLAESRSNKVIASMLDISVKTVESHRGNIMRKLGAHSLADIVRYAIR 216

Query: 231 FGYI 234
              I
Sbjct: 217 NKLI 220


>gi|86157284|ref|YP_464069.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773795|gb|ABC80632.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 211

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L  +G  ++ IA +LG+S HT   ++ +   KL A +R +AI +A R G
Sbjct: 148 PLTPREREVLALVAEGLGNKGIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 207

Query: 233 YI 234
            +
Sbjct: 208 LV 209


>gi|311894358|dbj|BAJ26766.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 226

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  + T+   + + + +++  GA  +++          +     LT+RE   L L G+G 
Sbjct: 114 GTDLVTAIRTVASGQSMLDP-GAATRLMARMRGESPAPAPEFPQLTDREREILALIGEGL 172

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           T+ +I E++ L+  TV  ++     KL    R+QA   A +
Sbjct: 173 TNRQIGERVYLAEKTVKNHISRLLAKLGVERRVQAAVIATQ 213


>gi|294498256|ref|YP_003561956.1| two-component response regulator DesR [Bacillus megaterium QM
           B1551]
 gi|295703606|ref|YP_003596681.1| two-component response regulator DesR [Bacillus megaterium DSM 319]
 gi|294348193|gb|ADE68522.1| two-component response regulator DesR [Bacillus megaterium QM
           B1551]
 gi|294801265|gb|ADF38331.1| two-component response regulator DesR [Bacillus megaterium DSM 319]
          Length = 200

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  S    LAN +     G          +L+ + +S    LT RE   L L 
Sbjct: 94  AGVSGYLLKDSPSEELANSIRSVMAGRRLYAPELVDDLYSESTSP---LTAREKEVLALV 150

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  ++EIA++L +   TV  Y+ +   KL+  NRI+AI +    G+
Sbjct: 151 ADGKNTKEIADELSIKTGTVRNYISTILDKLEVKNRIEAITRFKEKGW 198


>gi|282863211|ref|ZP_06272271.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562193|gb|EFB67735.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 216

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A  Q+  ++     + +     LTERE++ L+L   G ++ EIA +L + V TV  ++ 
Sbjct: 130 AAVRQLAAEYGTSEARAAMDRAALTERESAVLRLMARGLSNAEIAAELVVGVQTVKTHVS 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL A +R QA+  A   G++
Sbjct: 190 AVLAKLGARDRTQAVIAAYESGFV 213


>gi|270263814|ref|ZP_06192082.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042007|gb|EFA15103.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 252

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 19/221 (8%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  ++      N  +Y            + + +    + D+ +          D F  
Sbjct: 23  SLLAWMEAFFAFDNAIVYAFERGRA----PRCLLKTEQENSDAVNQIYQRGAYLQDPFYQ 78

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF--AGIAFPVRLGFHKNGYVIFTS 136
             N G    ++   Q                        AG+  P+        +     
Sbjct: 79  MLNGGGGGEVFSLRQLAPCGFYHTDYYRNFYRKTGWHDEAGVLLPLTPERGLGVFFGSAR 138

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQ 183
           + + +    + E   A   + +      +  ++                 LT RE   + 
Sbjct: 139 QTVGMRYPQLAELRSALTLLKSIARLHGEVVAAPVSPDTAEDKTRQVRYLLTPREREIVD 198

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           L   G  S++IA++L +S+ TV  +  +   KLD  ++ + 
Sbjct: 199 LILSGCGSQQIADRLFISLGTVKNHRKNIYGKLDIGSQAEL 239


>gi|238763420|ref|ZP_04624383.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238763501|ref|ZP_04624463.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238698283|gb|EEP91038.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238698364|gb|EEP91118.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
          Length = 210

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|228901714|ref|ZP_04065887.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222]
 gi|228857943|gb|EEN02430.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222]
          Length = 592

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|218672704|ref|ZP_03522373.1| probable two-component response regulator protein [Rhizobium etli
           GR56]
          Length = 207

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +S    LT RE   + L   G +++ I  +L L   TV  ++     KL   NR +A 
Sbjct: 141 GAASDKNGLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVSNRTEAA 200

Query: 226 AKAIRF 231
            +    
Sbjct: 201 LQWRER 206


>gi|148379355|ref|YP_001253896.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153934107|ref|YP_001383731.1| LuxR family DNA-binding response regulator [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937750|ref|YP_001387280.1| LuxR family DNA-binding response regulator [Clostridium botulinum A
           str. Hall]
 gi|148288839|emb|CAL82923.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152930151|gb|ABS35651.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933664|gb|ABS39163.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. Hall]
 gi|322805695|emb|CBZ03260.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 217

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     S   NLTERE + ++   +G +++EIAEK+ LS  T+   + +   KLD  +R
Sbjct: 144 ELNDDDISLRYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDR 203

Query: 222 IQAIAKAIRFGYI 234
            Q    A +   +
Sbjct: 204 TQIAIFAFKNNIV 216


>gi|330467467|ref|YP_004405210.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810438|gb|AEB44610.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 226

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L L G G  ++EI  +L LS  T   ++  A  KL A +R Q +  A + G 
Sbjct: 162 LTDREREVLALVGRGLNNDEIGGELFLSPATARTHVSRAMAKLGARDRAQLVVIAYQTGL 221

Query: 234 I 234
           +
Sbjct: 222 V 222


>gi|311896469|dbj|BAJ28877.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 170

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +  +  L    E ++                    + A   LT RE   L+L   G
Sbjct: 59  RPAEVVQAVRLAATGETLLFPAAIRRLAAARAGHAADGGAVARAGLTGREGEVLRLMARG 118

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EI  +L L V TV  ++ +   KL A +R QA+  A   G++
Sbjct: 119 LSNAEIGAQLHLGVQTVKTHVSAVLGKLGARDRTQAVIAAYESGFV 164


>gi|296269744|ref|YP_003652376.1| LuxR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296092531|gb|ADG88483.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM
           43833]
          Length = 228

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +     ++  +        + ++++ E   +  +++                L+ RE   
Sbjct: 118 LNRHVLEDALIRVARSETPMPSQIVAELFDSADRMLRR------GTHPRYVELSAREREA 171

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQL  DG +++EIA++L +SVH     +G+  +KL+  NR QA   A+R G +
Sbjct: 172 LQLLADGLSNKEIAQRLYISVHGAKRLVGNILLKLNCPNRTQAAVIAMRHGLV 224


>gi|285018517|ref|YP_003376228.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283473735|emb|CBA16238.1| probable two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 236

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 40/83 (48%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                +++++       +SA   LT RE   +QL  +G ++++IA +L +SV T+  +  
Sbjct: 129 ALSQSLVSEYRCPPGDAASAYTLLTSREREVVQLLSEGLSTKDIAARLHISVKTIGTHRE 188

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
              +KL   +  Q    AIR G 
Sbjct: 189 HIMLKLGMQSIAQLTRYAIREGL 211


>gi|238920403|ref|YP_002933918.1| csgAB operon transcriptional regulatory protein [Edwardsiella
           ictaluri 93-146]
 gi|238869972|gb|ACR69683.1| probable csgAB operon transcriptional regulatory protein
           [Edwardsiella ictaluri 93-146]
          Length = 206

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                   ++    E      +    LT RE   L+    G ++ +I+  L +S +TV  
Sbjct: 120 ALIRRLRTLLMAAQEEGPGYMTPTPRLTLRELEVLKAMQQGASNLDISRILYISKNTVRT 179

Query: 208 YLGSATVKLDAVNRIQAIAKA 228
           ++ +   K+   NRIQA+  A
Sbjct: 180 HVYNIFKKISVKNRIQAVIWA 200


>gi|229145112|ref|ZP_04273504.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|228638310|gb|EEK94748.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
          Length = 304

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVI-----IEAHGACYQVITDFLE--LFKKRSSAAR-N 173
           +R G          S  L  +  ++     +  H   +++  +  E  LF+ RS      
Sbjct: 183 IRNGADGYVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGIEYG 242

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L+L   G   + IA  L LS  TV  Y  +   KL   NR +A+ KA   G 
Sbjct: 243 LSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 302

Query: 234 I 234
           +
Sbjct: 303 L 303


>gi|212710861|ref|ZP_03318989.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM
           30120]
 gi|212686558|gb|EEB46086.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM
           30120]
          Length = 206

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +E H    + +   L    +       LT RE   L     G  ++EI++ L +S  TV 
Sbjct: 121 MEGHHVFSEKVYQHLITRHQTKDPLSTLTRRECEILHEMAAGLKNKEISQLLFISEETVK 180

Query: 207 AYLGSATVKLDAVNRIQA 224
            ++ +   KL   +R++A
Sbjct: 181 VHIRNVLKKLRVRSRLEA 198


>gi|167619378|ref|ZP_02388009.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           Bt4]
          Length = 74

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 5   DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 64

Query: 232 GY 233
           G 
Sbjct: 65  GL 66


>gi|289663521|ref|ZP_06485102.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 235

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      +  A +        H    V +        N+ +        
Sbjct: 86  AAGDGHEAGWLMPPRPVDIREARVPIHALGTTHGMLCVAWNESRPAPGNDDVQALQAFAL 145

Query: 155 QVITDFLELF-----KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E       ++R          L++RE   L L   G T+  +A +LG++  TV
Sbjct: 146 LLPAMVAEPAKPIATRRRKPVQDDRLGALSKRERQVLSLLPRGLTNATLAAELGIAPGTV 205

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++     KL+  +R QA   A++ G 
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|290962712|ref|YP_003493894.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260652238|emb|CBG75371.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 216

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 19/127 (14%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFLELFKKRSSAA 171
             + L     G+++        A  ++IEA  +  +        V    L L ++R+SAA
Sbjct: 89  LTIALRNGACGFLL-----KDAAPALLIEAVRSAARGDALVSPGVTVRLLRLLEERTSAA 143

Query: 172 R------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   L+ RE    +L   G T++EI+++L LS+ TV  +LG    KL   NR++  
Sbjct: 144 AGGVPGSALSARELEVARLVAVGRTNQEISDELCLSLSTVKTHLGHIHHKLGVRNRVEVA 203

Query: 226 AKAIRFG 232
           A A   G
Sbjct: 204 AWAWANG 210


>gi|290958798|ref|YP_003489980.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260648324|emb|CBG71435.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 256

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G ++ EIA +L +S HTV  ++G+   KL   +R+QA+  A   G 
Sbjct: 167 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRVQAVICAYETGL 226

Query: 234 I 234
           I
Sbjct: 227 I 227


>gi|297565170|ref|YP_003684142.1| LuxR family transcriptional regulator [Meiothermus silvanus DSM
           9946]
 gi|296849619|gb|ADH62634.1| transcriptional regulator, LuxR family [Meiothermus silvanus DSM
           9946]
          Length = 768

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 9/223 (4%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-GDD 75
           +   LH   +  +AR F    +  A     +  +     N  L               + 
Sbjct: 540 IGSVLHRRGDISQARTFFEEALALARPRHDKWLMSVVTRNLGLALASEDPAQALALLQES 599

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
               +  G   +  + ++    +++  + + +L G    F   AF ++ G     +V   
Sbjct: 600 LALAYEIGHRSLTVRGLEALAGLQAQAEAAAKLLGASEVFRD-AFGLKRGSSSEAWVAAV 658

Query: 136 SEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            E L  A        G            +     L   +      LT+RE   +     G
Sbjct: 659 RERLGPAAFEAAWNQGQAMTPGEAVALALGRGAPLPIAQVQRPGGLTDREIQVVWEIASG 718

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            T+ +IAEKL +S  TV+A++ +   KL    R Q    A R 
Sbjct: 719 LTNRQIAEKLEISQRTVDAHVQNILNKLGVEKRTQIAVWASRH 761


>gi|325269083|ref|ZP_08135704.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324988704|gb|EGC20666.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 217

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G  ++EIAEKL +S+ TV  +  +   KL   +       A+  GY
Sbjct: 152 LSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGY 211

Query: 234 I 234
           I
Sbjct: 212 I 212


>gi|300949995|ref|ZP_07163946.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300955336|ref|ZP_07167717.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|331644390|ref|ZP_08345519.1| transcriptional regulatory protein UhpA [Escherichia coli H736]
 gi|300317756|gb|EFJ67540.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300450640|gb|EFK14260.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|331036684|gb|EGI08910.1| transcriptional regulatory protein UhpA [Escherichia coli H736]
          Length = 217

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 95  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 151

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 152 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 211

Query: 227 K 227
           +
Sbjct: 212 R 212


>gi|302520045|ref|ZP_07272387.1| response regulatory protein [Streptomyces sp. SPB78]
 gi|318061142|ref|ZP_07979863.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318079227|ref|ZP_07986559.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|302428940|gb|EFL00756.1| response regulatory protein [Streptomyces sp. SPB78]
          Length = 220

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 36/110 (32%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++       L   +   A G           +     +    LT RE   L  
Sbjct: 110 NAGATGYLLKAERPEELFAAIHAAAQGRTALSPPVAHRVLAHLRAPRPELTPRERDILAQ 169

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + +IA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 170 LSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 219


>gi|291298070|ref|YP_003509348.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567290|gb|ADD40255.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             V         AG +  +    H    +            +   A           L  
Sbjct: 87  FDVDAYVYAGLRAGASGFLLKDSHAATLIAAVHTVASGNAVLSPWATSRLVSTFAPLLPE 146

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                   + LT RE   L L G G ++ EIA +LG+   TV ++L S   KL   +R+ 
Sbjct: 147 PLATPPRLKALTARERDVLSLTGRGLSNNEIATELGIGYETVKSHLRSVMTKLRLRDRVH 206

Query: 224 AIAKAIRFGYI 234
           A+  A   G +
Sbjct: 207 AVIVAYETGLL 217


>gi|228469458|ref|ZP_04054466.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas uenonis 60-3]
 gi|228309033|gb|EEK17676.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas uenonis 60-3]
          Length = 201

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   S    L++RE   +     G T++EIA+ L LS HTV  +  +   KLD  + 
Sbjct: 121 ELIESDESKQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSP 180

Query: 222 IQAIAKAIRFGYI 234
                 A+    I
Sbjct: 181 SGLTIYALMNNLI 193


>gi|189467258|ref|ZP_03016043.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM
           17393]
 gi|189435522|gb|EDV04507.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM
           17393]
          Length = 250

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 106 VRLEGGLLPFAGIA---FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162
           +R+      +  I    F +    + + ++        +   +   +           LE
Sbjct: 124 MRMRDHSGRYVHILHRMFYIASHSNGSVWLSLCLYNFSMDTSL---SCTILNSADGQTLE 180

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L K+       L+ERE   LQL   G  S++IA+ L +S++TVN +  +   KL   N I
Sbjct: 181 LEKQN--CNDLLSEREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEKLQVNNSI 238

Query: 223 QAIAKAIRFGYI 234
           +A   A     +
Sbjct: 239 EACRIAKELHLL 250


>gi|323180293|gb|EFZ65845.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1180]
          Length = 123

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS  T+  +  +   KLD  + I+ I 
Sbjct: 54  RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTIETHRLNIMKKLDVYSGIELIK 113

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 114 TALRMG-VC 121


>gi|311280576|ref|YP_003942807.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
 gi|308749771|gb|ADO49523.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
          Length = 210

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 4/114 (3%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK---KRSSAAR-NLTERETS 180
               NG+V    +   +   V +   G  +        L +   +R S     L+ RE  
Sbjct: 97  RAGANGFVSKRKDQNDIYKAVEMLLSGYSFFPADTLSALSRSHIRRGSKTELPLSNREVM 156

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+   +G T++EIA+KL LS  T++A+  +   KL     ++ I  A     +
Sbjct: 157 VLRYLANGLTNKEIADKLLLSNKTISAHKSNIFSKLGVRTIVELIDYAKAHELL 210


>gi|296137313|ref|YP_003644555.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|294341618|emb|CAZ90035.1| putative two-component system response regulator; CheY domain
           [Thiomonas sp. 3As]
 gi|295797435|gb|ADG32225.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 223

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA 171
            FP  L     GY++     + L  ++     G          +++  F  L +  S+ +
Sbjct: 93  LFPA-LQAGAFGYLLKDRPKIELRAQLRRIQDGEPPLSPSIARRMVQHFTHLHRTMSAPS 151

Query: 172 R--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     LTERE+  LQL G GYT  EIA +LGLS HTV  Y+     KL+  +R +
Sbjct: 152 SNLPQEEHIALTERESEVLQLVGKGYTLPEIAVQLGLSRHTVADYVKQIYRKLNISSRAE 211

Query: 224 AIAKAIRFGYI 234
           A  +A+R G +
Sbjct: 212 AALEAVRRGLV 222


>gi|238760517|ref|ZP_04621652.1| Two-component response regulator [Yersinia aldovae ATCC 35236]
 gi|238701269|gb|EEP93851.1| Two-component response regulator [Yersinia aldovae ATCC 35236]
          Length = 210

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|228997307|ref|ZP_04156929.1| Response regulator receiver [Bacillus mycoides Rock3-17]
 gi|229004932|ref|ZP_04162659.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228756280|gb|EEM05598.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228762399|gb|EEM11324.1| Response regulator receiver [Bacillus mycoides Rock3-17]
          Length = 578

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L    +G   +EIA KL LS  TV  Y  S  +KL    R +A+ KA+
Sbjct: 514 PPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQVSGRGEAVKKAL 573


>gi|226349997|ref|YP_002777110.1| two-component response regulator [Rhodococcus opacus B4]
 gi|226245909|dbj|BAH47173.1| two-component response regulator [Rhodococcus opacus B4]
          Length = 209

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L+ RE   ++L   G T+ EIAE+L +S  TV ++  S   KL    R +    A   
Sbjct: 146 DSLSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDA 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLL 208


>gi|213963027|ref|ZP_03391286.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
 gi|213954368|gb|EEB65691.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
          Length = 235

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L LA  G++S+EIAEKL +S +TVN +  +   K +A + I+AI  A + G 
Sbjct: 175 LTPREKEILTLASQGFSSKEIAEKLFISTYTVNRHRQNIREKFNAESLIEAIDIARKKGV 234

Query: 234 I 234
           +
Sbjct: 235 L 235


>gi|220908626|ref|YP_002483937.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219865237|gb|ACL45576.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 211

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LTERE   L L   G ++ EIA+ L +S  TV  ++ +   +L   +R QA   
Sbjct: 150 ELTERELEILDLIATGASNREIAQTLYISEKTVKNHVTNILSRLQLRDRTQAAIL 204


>gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 219

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +   LT  ET  +QL   G ++ ++AEKL +S  T+ +++ +   K +  NR +    A
Sbjct: 154 PSNVELTPTETKVVQLVAQGLSNRDVAEKLSVSQRTIESHVSNMLNKTNLHNRTELARWA 213

Query: 229 IRF 231
           I  
Sbjct: 214 IEN 216


>gi|170780573|ref|YP_001708905.1| LuxR family transcriptional regulator [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155141|emb|CAQ00241.1| putative LuxR-family transcriptional regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 540

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGD 187
                  +   +L   +  + H    +V+        +  ++    LT+RE   +    D
Sbjct: 428 FAVFPAAASHALLDRALARDQHPDVREVLEGVRAGQVRVEAAPVEPLTDRERIIVACLAD 487

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           G T  +IA +L +S +TV +++ +A  KLDA +R +A+ +A   G
Sbjct: 488 GLTVTQIAGRLFISPNTVKSHIRTAYRKLDARSRSEAVERARALG 532


>gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
 gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
          Length = 219

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +   LT  ET  +QL   G ++ ++AEKL +S  T+ +++ +   K +  NR +    A
Sbjct: 154 PSNVELTPTETKVVQLVAQGLSNRDVAEKLSVSQRTIESHVSNMLNKTNLHNRTELARWA 213

Query: 229 IRF 231
           I  
Sbjct: 214 IEN 216


>gi|89053110|ref|YP_508561.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862659|gb|ABD53536.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 203

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 14/186 (7%)

Query: 49  QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108
             +  ++ Y     ++    +    D  L    S      W  I             ++ 
Sbjct: 32  SPLIMVNTYPDVWQEVYTSKLYGLRDPTLAWGLSHTGTRRWSQIGLPDPFG-----ILQE 86

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
                   G+   +            +       ++ +   +   +++           S
Sbjct: 87  SADYGLRYGMIASI-GPMSSRTVAGASRADREFTDDEMELVYRIVHRMH--------DLS 137

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L++ +   L+   +G      A KLG+S     A L SA  KL A    +A+ +A
Sbjct: 138 EPPARLSKAQADALKCIAEGDRHAAAAAKLGISESAFKARLTSARQKLMARTTAEAVQRA 197

Query: 229 IRFGYI 234
             +G I
Sbjct: 198 KEYGLI 203


>gi|154244941|ref|YP_001415899.1| two component LuxR family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154159026|gb|ABS66242.1| two component transcriptional regulator, LuxR family [Xanthobacter
           autotrophicus Py2]
          Length = 210

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              +   +     A +LT R+   L+L   G +++EI   L LS  TV  ++ S    L 
Sbjct: 134 AAPVATSEAAEEPAPHLTTRQLEVLKLLSRGLSNKEIGNTLDLSEKTVKVHITSIFRSLH 193

Query: 218 AVNRIQAIAKAIRFGYI 234
            +NR QA + A +   I
Sbjct: 194 VINRTQAASAARQGNLI 210


>gi|124266442|ref|YP_001020446.1| response regulator [Methylibium petroleiphilum PM1]
 gi|124259217|gb|ABM94211.1| response regulator [Methylibium petroleiphilum PM1]
          Length = 245

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
                 +G +   S       +    A  A   V  +              LT RET  L
Sbjct: 146 HFRLGDSGSMALDSAHAPGDFQP---ARPAAPAVYAE---------PDHERLTPRETEVL 193

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                G+T +EIA  +G+   TVN ++ +   KL+  +R +A   A + G +
Sbjct: 194 TYLSKGFTIKEIAGLMGIKWFTVNDHIKAIYRKLNVSSRAEAAVLASKQGLV 245


>gi|317122922|ref|YP_004102925.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592902|gb|ADU52198.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 259

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              R      LT R+   L+L  +G ++ EIA +L LS  TV   +     +L   +R+Q
Sbjct: 174 RDPRLDGPEPLTARQREVLELLAEGLSNREIAARLHLSEGTVKNVVSEIYARLQVRDRVQ 233

Query: 224 AIAKAI 229
           A+ +A 
Sbjct: 234 AVLRAR 239


>gi|308067670|ref|YP_003869275.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
 gi|305856949|gb|ADM68737.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
          Length = 199

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              +GY++  S    LA+ +     G          EL     +    LTERE + L L 
Sbjct: 94  AGTHGYLLKDSPSEELASSIRSIMAGRRIYA----PELVDDAYAEVNPLTEREKTVLALI 149

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG  ++EIA +L L+  TV  Y+     KL   NRI+AI +    G+
Sbjct: 150 ADGKNTKEIAGELYLTTGTVRNYISVILDKLGVSNRIEAITRFNEKGW 197


>gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 245

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L++   G ++ EI  +L LS  TV  Y+ S   K    NR + +  AI  G
Sbjct: 183 SLTPREQEVLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHG 242

Query: 233 YI 234
            +
Sbjct: 243 LV 244


>gi|323156843|gb|EFZ42977.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli EPECa14]
          Length = 203

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 143 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 197


>gi|227823525|ref|YP_002827498.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
 gi|227342527|gb|ACP26745.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
          Length = 258

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++   A   LT RE   L L   G  ++ IA++LGLS +TV  ++ +   K++  NR +
Sbjct: 178 ERRGEGARGVLTTREVQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTE 237

Query: 224 AIAKAIRF 231
           A ++  R 
Sbjct: 238 AASRYFRH 245


>gi|157368857|ref|YP_001476846.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320621|gb|ABV39718.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 252

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 19/221 (8%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  ++      N  +Y      +  +  + + +    + D+ +          D F  
Sbjct: 23  SLLAWLEGFFAFDNAIVYA----FERGQAPRCLIKTEKENSDAVNQLYQQGAYLQDPFYQ 78

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF--AGIAFPVRLGFHKNGYVIFTS 136
             N G    +    Q                        AG+  P+        +     
Sbjct: 79  ALNGGGCGEVLTLRQLAPCGFYHTDYYRNFYRKTGWHDEAGVLLPLTAERGLGVFFGSAR 138

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQ 183
           + + + +  + +   A   + +      + R + A               LT RE   + 
Sbjct: 139 QSVGVRSPQLADLRDALTLLKSVARLHGEVRVAPATPDRVTDSAVQARYLLTPREREIVD 198

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           L  DG  S++IA++L +S+ TV  +  +   KLD  ++ + 
Sbjct: 199 LILDGCGSQQIADRLFISLGTVKNHRKNIYSKLDIGSQAEL 239


>gi|191165770|ref|ZP_03027608.1| transcriptional regulatory protein UhpA [Escherichia coli B7A]
 gi|193069199|ref|ZP_03050156.1| transcriptional regulatory protein UhpA [Escherichia coli E110019]
 gi|194428140|ref|ZP_03060684.1| transcriptional regulatory protein UhpA [Escherichia coli B171]
 gi|256021313|ref|ZP_05435178.1| DNA-binding transcriptional activator UhpA [Shigella sp. D9]
 gi|300815087|ref|ZP_07095312.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300822443|ref|ZP_07102583.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300903057|ref|ZP_07120998.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300917507|ref|ZP_07134166.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300925486|ref|ZP_07141364.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300932293|ref|ZP_07147564.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|301306297|ref|ZP_07212369.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301325360|ref|ZP_07218863.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|309795786|ref|ZP_07690201.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331679764|ref|ZP_08380434.1| transcriptional regulatory protein UhpA [Escherichia coli H591]
 gi|332282546|ref|ZP_08394959.1| DNA-binding transcriptional activator UhpA [Shigella sp. D9]
 gi|190904094|gb|EDV63805.1| transcriptional regulatory protein UhpA [Escherichia coli B7A]
 gi|192957523|gb|EDV87969.1| transcriptional regulatory protein UhpA [Escherichia coli E110019]
 gi|194413898|gb|EDX30176.1| transcriptional regulatory protein UhpA [Escherichia coli B171]
 gi|300404911|gb|EFJ88449.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300415265|gb|EFJ98575.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300418414|gb|EFK01725.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300459955|gb|EFK23448.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300525090|gb|EFK46159.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300531979|gb|EFK53041.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300838479|gb|EFK66239.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300847798|gb|EFK75558.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|308120665|gb|EFO57927.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|324019711|gb|EGB88930.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|331072936|gb|EGI44261.1| transcriptional regulatory protein UhpA [Escherichia coli H591]
 gi|332104898|gb|EGJ08244.1| DNA-binding transcriptional activator UhpA [Shigella sp. D9]
          Length = 217

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 95  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 151

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 152 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 211

Query: 227 K 227
           +
Sbjct: 212 R 212


>gi|325499075|gb|EGC96934.1| HTH-type transcriptional regulator YhjB [Escherichia fergusonii
           ECD227]
          Length = 196

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A    +  +     ++    D+L + +  S   + L+ R+   L +   G +++E
Sbjct: 98  PRDSGAETFALALNSVVMGMMFLPGDWLSMPETESRDIKTLSVRQREILTMLAAGESNKE 157

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 158 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 191


>gi|311694746|gb|ADP97619.1| HTH-type transcriptional regulator MalT [marine bacterium HP15]
          Length = 930

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L L   G+ ++EIA K+ ++  TV A++ +   KL    R +A+A+A   
Sbjct: 866 EPLSQRELEVLALIHAGHANKEIAAKMDVAPATVKAHIRNLYGKLGVGRRTEALARAREL 925

Query: 232 GYI 234
           G +
Sbjct: 926 GLL 928


>gi|282877369|ref|ZP_06286192.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC
           35310]
 gi|281300421|gb|EFA92767.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC
           35310]
          Length = 203

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L L   GY ++EIA++L + + TV  +  +   KL   +       A+  GY
Sbjct: 138 LSDREIEVLSLIVQGYINKEIADQLNIGMTTVITHRKNIMDKLGVKSVSALTIYAVMHGY 197

Query: 234 I 234
           +
Sbjct: 198 V 198


>gi|261253170|ref|ZP_05945743.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
 gi|260936561|gb|EEX92550.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
          Length = 212

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L  +G +S++IA  L +S  TV  +  +   KLD  +  +    A+  G
Sbjct: 150 PLSRREEAVLKLVAEGNSSKKIASLLDISYRTVETHRQNIKHKLDLHSTAELAKYAVEQG 209

Query: 233 YI 234
            +
Sbjct: 210 IV 211


>gi|255642661|gb|ACU21562.1| AhyR/asaR [Aeromonas hydrophila]
          Length = 88

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    L+ RE    + A +G    +IA+ LG++  TV  +L +   KL A ++ QAI+ A
Sbjct: 7   SPHDALSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWA 66

Query: 229 IRFGYI 234
           ++ G +
Sbjct: 67  LKQGMV 72


>gi|196232621|ref|ZP_03131473.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223383|gb|EDY17901.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTS 191
             E L+ A   ++         + + L     RS   +    L++RE    +L   G + 
Sbjct: 107 APEELVKAVRKVMAGGHYVSAALGEKLAADLGRSRNRAHHETLSDREYQVFRLMLGGKSL 166

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +E A +L +S  TV+ Y      KL   N I+    A+  G 
Sbjct: 167 KETAAELSVSPKTVSTYRTRIFEKLRVKNDIELARYAMEHGL 208


>gi|123442878|ref|YP_001006854.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332161274|ref|YP_004297851.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122089839|emb|CAL12695.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|325665504|gb|ADZ42148.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330864132|emb|CBX74201.1| fimbriae Z protein [Yersinia enterocolitica W22703]
          Length = 210

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|28898681|ref|NP_798286.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839650|ref|ZP_01992317.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|153841882|ref|ZP_01993448.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260364886|ref|ZP_05777457.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260879713|ref|ZP_05892068.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260898812|ref|ZP_05907253.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260900783|ref|ZP_05909178.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28806899|dbj|BAC60170.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149745434|gb|EDM56685.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149746824|gb|EDM57812.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308086611|gb|EFO36306.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093313|gb|EFO43008.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308106843|gb|EFO44383.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308111747|gb|EFO49287.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|328474754|gb|EGF45559.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 212

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G +S++IA  L +S  TV  +  +   KLD  +  +    A   G
Sbjct: 150 PLSRREEAVLRLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209

Query: 233 Y 233
            
Sbjct: 210 L 210


>gi|284042088|ref|YP_003392428.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946309|gb|ADB49053.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 196

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +     V           + D   +   R  +   L+ERE   L L  +G T+ +I   L
Sbjct: 102 IDRTWPVARLLTALRAAGLDDTAPIH--RPPSPTRLSERERQVLTLVSEGSTNAQIGRSL 159

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS HT+  +  S   KL A NR +A+ +A   G +
Sbjct: 160 CLSPHTIKQHTSSVYRKLHARNRAEAVTRARELGLL 195


>gi|282900664|ref|ZP_06308606.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194464|gb|EFA69419.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L    S    +++ RE   L+L   G ++ EI  KL LS  TV  Y+ S   K  + NR 
Sbjct: 159 LNHPDSHILMSISTREREVLELLTHGLSNAEIGSKLYLSPRTVEKYVSSLLRKTSSNNRA 218

Query: 223 QAIAKAIRFGYI 234
           + +  AI+ G +
Sbjct: 219 ELVRFAIKHGIV 230


>gi|257454885|ref|ZP_05620136.1| response regulator UvrY [Enhydrobacter aerosaccus SK60]
 gi|257447818|gb|EEV22810.1| response regulator UvrY [Enhydrobacter aerosaccus SK60]
          Length = 212

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    L+ERE     +  +  + ++IA++L +SV TVN Y      KL+  + ++    A
Sbjct: 145 SPFDALSEREMQVAMMVVNCKSPQQIADQLFVSVKTVNTYRYRIFEKLNIDSDVKLTHLA 204

Query: 229 IRFGYI 234
           +R G +
Sbjct: 205 MRHGLV 210


>gi|138895707|ref|YP_001126160.1| two-component response regulator ComA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250961|ref|ZP_03149644.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134267220|gb|ABO67415.1| Two-component response regulator ComA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209525|gb|EDY04301.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 223

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169
            L  +GI   V         +     +        V +       +V    +E  +  + 
Sbjct: 91  YLIESGITGFVSKTATSEQLITAIRCALRDEAVIPVHLLRQLQLCEVKARMVENEEHVA- 149

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L++ E   L    +G ++++IA+K  +S  +V  +L     KL   +RI+A+ KA 
Sbjct: 150 ----LSQLEQEILFEVANGLSNKDIAKKHYISQRSVERHLSRIFTKLHVSSRIEAVEKAR 205

Query: 230 RFGYI 234
           + G I
Sbjct: 206 QLGLI 210


>gi|160881748|ref|YP_001560716.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430414|gb|ABX43977.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 232

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               LT+RE     +  +G+T+ +IA  L +S  TV  Y+ S   KL   +R     
Sbjct: 167 PLSELTKREHEICAMIAEGFTNSQIASFLYISEGTVKNYISSIYDKLQIHDRAALAV 223


>gi|152989443|ref|YP_001346571.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964601|gb|ABR86626.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 906

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  + A   L+ RE + L+L   G +++EI+E+L +S+HTV ++      KL    R Q
Sbjct: 835 AEPAAVAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQ 894

Query: 224 AIAKAIRFGYI 234
           A+A+A   G +
Sbjct: 895 AVARAKHMGLL 905


>gi|29832167|ref|NP_826801.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609285|dbj|BAC73336.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 239

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLA 185
             G     +   ++A    + A G   ++I DF+   ++  +      +TERE   L L 
Sbjct: 107 DMGLDDILAAVRVVAAGDALIAPGVTRRLIQDFVASPEQPRARRELTEITEREREVLTLV 166

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G G T+ EIAE+L +SV T   YL     KLDA +R+Q +  A   G +
Sbjct: 167 GTGLTNTEIAERLFISVATAKTYLTRLLAKLDARDRVQLVIIAYEAGLV 215


>gi|300784381|ref|YP_003764672.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299793895|gb|ADJ44270.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 1004

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             ++   +   L     +      LT+RE   L+    G T+ ++ E+L +S  TV+ +L
Sbjct: 915 LAHRARVELAGLEPAPPARTVTDPLTDRERDVLERVALGRTNRQVGEELYISEKTVSVHL 974

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL A  R +A+A A   G +
Sbjct: 975 SRVMAKLGASRRAEAVAIAYDRGLL 999


>gi|295394380|ref|ZP_06804604.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972732|gb|EFG48583.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 221

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE    +L   G ++ EIA +L ++  TV  ++     KL+  +RI A+  A   
Sbjct: 159 ERLTAREREVFELVARGKSNAEIAGELFMAGPTVKTHVSHILTKLEVRDRIHAVIFAYEA 218

Query: 232 GYI 234
           G +
Sbjct: 219 GVV 221


>gi|294630515|ref|ZP_06709075.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|292833848|gb|EFF92197.1| two-component system, regulatory protein [Streptomyces sp. e14]
          Length = 225

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R LT RE   L+L   G T+ E A++L +S  TV  +L     KL+  +R QA+  A   
Sbjct: 157 RALTGREVEVLRLVARGLTNAEAADRLFISEATVKTHLNRTMTKLNLASRAQAVVVAYES 216

Query: 232 GYI 234
           G +
Sbjct: 217 GLV 219


>gi|302540779|ref|ZP_07293121.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458397|gb|EFL21490.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 239

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 37/80 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           GA  +V+                L+ RE   L+L GDG T+ +IAE+L L+  TV   + 
Sbjct: 152 GATARVMARLRGPQPSTPDELERLSPREREILELIGDGLTNRQIAERLFLAEKTVKNRIS 211

Query: 211 SATVKLDAVNRIQAIAKAIR 230
           S   KL    RIQA   A R
Sbjct: 212 SILSKLGVGRRIQAAVIAER 231


>gi|197118634|ref|YP_002139061.1| LuxR family helix-turn-helix transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087994|gb|ACH39265.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter bemidjiensis Bem]
          Length = 216

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             + +     +LT RE    +L   G   +EI  +L +S  TV  Y      KL+  N  
Sbjct: 139 ADEGKPLGKYSLTPREEQAYRLLVAGKNCKEIGYELKISSKTVETYRLKVMKKLNISNIA 198

Query: 223 QAIAKAIRFGYI 234
           Q +  A++ G +
Sbjct: 199 QLVNHAVQEGIV 210


>gi|325298451|ref|YP_004258368.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
 gi|324318004|gb|ADY35895.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
          Length = 202

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +            L++RE   +     G T++EIAEKL +SVHTV  +  + T KL   
Sbjct: 119 LMNFSDDEEDDQDALSQREKEIICCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIH 178

Query: 220 NRIQAIAKAIRFGYI 234
           +       AI    +
Sbjct: 179 SAAGLTIYAIVNKLV 193


>gi|319795110|ref|YP_004156750.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597573|gb|ADU38639.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 155

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--------FKKRSSAAR--NL 174
              +   ++F+ E         I  H                         +  A   +L
Sbjct: 28  REDELAALMFSMERSHSPGASRIARHMLALIAAAAKSRPPSAIATKPRTGAAPPAANVSL 87

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   LQL   G ++  IAE L  S +T++  + S   KLD  +R +A+  A+  G +
Sbjct: 88  SPRELQVLQLVSQGLSNRRIAEALSRSANTIDTQIKSIYRKLDVNSRTRAVRAAMEQGLL 147


>gi|302519506|ref|ZP_07271848.1| two component system response regulator [Streptomyces sp. SPB78]
 gi|302428401|gb|EFL00217.1| two component system response regulator [Streptomyces sp. SPB78]
          Length = 221

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L G G  +  IAEKL +S  TV  ++ +   K    +R +A+ +A+  G 
Sbjct: 161 LTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALTAGL 220


>gi|239929404|ref|ZP_04686357.1| two-component system DNA-binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291437730|ref|ZP_06577120.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340625|gb|EFE67581.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 241

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + E       ++    L+ F    +         LT
Sbjct: 123 IRGGARGYVTKTITGADLIDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 182

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 183 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 241


>gi|284035632|ref|YP_003385562.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814925|gb|ADB36763.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 218

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              R+     L+ +E   LQ   DG +S EIAEKL LSV TV+ +  +   +L   N  +
Sbjct: 148 RHGRAERQSKLSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHRANMMRRLQVRNAAE 207

Query: 224 AIAKAIRFGYI 234
            +  A+    I
Sbjct: 208 LVRMAVEDKLI 218


>gi|254441153|ref|ZP_05054646.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198251231|gb|EDY75546.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 204

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 1/113 (0%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETS 180
           V L     G+V  +     L N +   A G  Y  I     + +  ++  A  LTERE  
Sbjct: 91  VALKAGAAGFVPKSLPAKSLVNAIKFMAMGEQYAPIDFMTAVEQTPTNPLADKLTERELQ 150

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L+   +G +++EIA  L +   TV  ++ +   K+   NR QA         
Sbjct: 151 MLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALIGREANL 203


>gi|153809558|ref|ZP_01962226.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185]
 gi|149127803|gb|EDM19027.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185]
          Length = 254

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L      A + LT+RE   L L   G+ S+EIA KL LS++TVN +  +   KL+  N I
Sbjct: 182 LALAVVPADQQLTKREKEILLLIRQGFLSKEIASKLNLSIYTVNNHRKNILAKLNVDNVI 241

Query: 223 QAIAKAIRFGYI 234
           +AI +A  FG +
Sbjct: 242 EAINRAESFGIL 253


>gi|159898252|ref|YP_001544499.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891291|gb|ABX04371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 870

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                   +   + +    L+ERE   L L   G +++ IA++L LS++TV A++ +   
Sbjct: 791 AAFGQMPLMPSAQVALIEPLSERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRNIYG 850

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   NR  A+AKA     +
Sbjct: 851 KLSVNNRTLAVAKAQELAIL 870


>gi|16125332|ref|NP_419896.1| LuxR family transcriptional regulator [Caulobacter crescentus CB15]
 gi|221234071|ref|YP_002516507.1| LuxR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|13422382|gb|AAK23064.1| transcriptional regulator, LuxR family [Caulobacter crescentus
           CB15]
 gi|220963243|gb|ACL94599.1| LuxR family transcriptional regulator [Caulobacter crescentus
           NA1000]
          Length = 137

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 38/69 (55%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             + A+ +LT +E   L+    G +++EIA  LGLS +TV  ++G+   KL+   R QA+
Sbjct: 68  DAALASLSLTGQEIKVLERLAAGRSNKEIARDLGLSPNTVKTHVGNLYAKLEVSRRTQAV 127

Query: 226 AKAIRFGYI 234
            KA     I
Sbjct: 128 GKARELSLI 136


>gi|290955970|ref|YP_003487152.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645496|emb|CBG68584.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGY 189
           +  +   + A E ++ A      +        +  +     L   T RE   L L   G 
Sbjct: 114 LLAAIETVAAGEPMLSAAATAALMGRFQAHAPRNWAKETERLAELTPREREMLVLVASGL 173

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+++I+E+L LS HTV  ++  A  K+    R Q +  A   G +
Sbjct: 174 TNDDISERLQLSRHTVKTHVNRAMTKIGVSERAQLVTIAYESGLV 218


>gi|238028111|ref|YP_002912342.1| putative DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237877305|gb|ACR29638.1| Putative DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 276

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 18/225 (8%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           SS  E    L  +  +I              D    +Q +  +     D   +  +    
Sbjct: 7   SSDAERRDGLRALLRQIDRHG-------GHNDAKDWRQAMRLVRQQSFDLIVVDFLSAMR 59

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG--GLLPFAGIAFPVRLGFHKN 129
             D           P+    +   +   +  Q S  ++G       A +           
Sbjct: 60  LDDLRALCGACAPTPVA-MLVDTTSPAIAPDQFSTGVQGVVPRGMGAHLVI------RAF 112

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             V+    ++      +++A  A  +       +  +R  +   L+ R+   ++    G 
Sbjct: 113 EMVLLGGYYVPPCALNLLDADAAEQRATRRLGSIPLRRQPSIGTLSPRQAQIMRFVHMGN 172

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T++ IA  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 173 TNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 215


>gi|291298613|ref|YP_003509891.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567833|gb|ADD40798.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 207

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           + I+        +      +  +R      LTERE   L+   +G ++ EI   L +S  
Sbjct: 117 QAIMLICPRAAGLNGGQRRVPTQRGGPV-GLTEREMQVLRGMSEGKSNAEIGRDLFVSED 175

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+  +      KL A +R  A+A+  R G +
Sbjct: 176 TIKTHARRLFRKLGARDRAHAVAEGFRGGIV 206


>gi|332669029|ref|YP_004452037.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338067|gb|AEE44650.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484]
          Length = 965

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 60/195 (30%), Gaps = 13/195 (6%)

Query: 40  SALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIE 99
           +     R +     L           +                G  P  W++   E    
Sbjct: 780 ARTTAERGRPRGGVLGPEGRAWLARAHAEHG--------RLVGGNDPEAWRAALREFGYG 831

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
              +L              +   R           T+     A   +  A          
Sbjct: 832 HRYEL-----ARTRWRLAESLLERGERDAARDEAATALAEADAMGAVPLATAVRGLARRG 886

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            L+L   R++ A  LT RE   L L   G ++ +I EKL +S  TV+ ++ +   KL   
Sbjct: 887 RLDLPGVRAAGADVLTAREVEVLGLVAQGLSNRQIGEKLFISGKTVSVHISNLLAKLGVS 946

Query: 220 NRIQAIAKAIRFGYI 234
            R +A++ A + G I
Sbjct: 947 GRAEAVSVAHQRGLI 961


>gi|304408549|ref|ZP_07390170.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307305377|ref|ZP_07585125.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304352370|gb|EFM16767.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306911680|gb|EFN42105.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 214

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  + +IAE L + + TV  +  +   KL+A N  + +    R G 
Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214


>gi|238789482|ref|ZP_04633267.1| Two-component response regulator [Yersinia frederiksenii ATCC
           33641]
 gi|238722432|gb|EEQ14087.1| Two-component response regulator [Yersinia frederiksenii ATCC
           33641]
          Length = 210

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|237734801|ref|ZP_04565282.1| transcriptional regulator [Mollicutes bacterium D7]
 gi|229382129|gb|EEO32220.1| transcriptional regulator [Coprobacillus sp. D7]
          Length = 71

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           LT RE     L     ++ +IA+ LG+S  TV  ++ +   KL   +RIQA+
Sbjct: 9   LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 60


>gi|223936673|ref|ZP_03628583.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894524|gb|EEF60975.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 198

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L    ++      L++RE   L+L   G    EIA++L LSV T++ Y      K+
Sbjct: 121 LASYLSADTQK-PPQELLSDREFQVLRLIASGKIVSEIAKELSLSVKTISTYRTRILEKM 179

Query: 217 DAVNRIQAIAKAIRFGYI 234
              N  + +  AI+   +
Sbjct: 180 GMKNNAELMHYAIQHQLV 197


>gi|168180051|ref|ZP_02614715.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           NCTC 2916]
 gi|182669120|gb|EDT81096.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           NCTC 2916]
          Length = 217

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     S   NLTERE + ++   +G +++EIAEK+ LS  T+   + +   KLD  +R
Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDR 203

Query: 222 IQAIAKAIRFGYI 234
            Q    A +   +
Sbjct: 204 TQIAIFAFKNNIV 216


>gi|167755832|ref|ZP_02427959.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402]
 gi|167704771|gb|EDS19350.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402]
          Length = 67

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           LT RE     L     ++ +IA+ LG+S  TV  ++ +   KL   +RIQA+
Sbjct: 5   LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 56


>gi|153940488|ref|YP_001390741.1| LuxR family DNA-binding response regulator [Clostridium botulinum F
           str. Langeland]
 gi|152936384|gb|ABS41882.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           F str. Langeland]
 gi|295318814|gb|ADF99191.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           F str. 230613]
          Length = 217

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     S   NLTERE + ++   +G +++EIAEK+ LS  T+   + +   KLD  +R
Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDR 203

Query: 222 IQAIAKAIRFGYI 234
            Q    A +   +
Sbjct: 204 TQIAIFAFKNNIV 216


>gi|146309197|ref|YP_001189662.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145577398|gb|ABP86930.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 220

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 125 GFHKNGYVIFTSEF---LMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178
                GY++  +     +    +V          V    L    +R+   +    LT RE
Sbjct: 98  NAGAVGYLLKDASRQEVIDGLRQVAAGQCALNGMVSAQLLRRVVQRNQGGAPGSALTPRE 157

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+L   G+T+ EI E+LG++  T  A++     KL   +R QA  + I  G +
Sbjct: 158 HQVLELIAAGFTNREIGEELGIATGTAKAHVERVIGKLGVADRTQAAVQGIALGLV 213


>gi|86747337|ref|YP_483833.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86570365|gb|ABD04922.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 228

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
               +        LT RE   + L   G  +++IA +L LS  TV  + G+   K+   +
Sbjct: 136 AHRDESIRLRYEQLTPREREVMALVAAGLMNKQIAWRLSLSEITVKIHRGNMIRKMQVKS 195

Query: 221 RIQAIAKAIRFG 232
             + +  A + G
Sbjct: 196 VAELVRLADQLG 207


>gi|77362110|ref|YP_341684.1| LuxR family CSG operon transcriptional regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877021|emb|CAI89238.1| putative csg operon transcription regulator (LuxR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 229

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 39/80 (48%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                  +   E  + +    ++LT+RE S + L   G ++  IA+KL +S HTV  +L 
Sbjct: 139 LVATSSFSSLHEGIELKQDDYQHLTKRERSVIHLIAQGASNSVIADKLNISDHTVKTHLY 198

Query: 211 SATVKLDAVNRIQAIAKAIR 230
           SA  K  + NR++    A R
Sbjct: 199 SAFKKTSSRNRVELANWAQR 218


>gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 215

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT RE   ++L   G  + +IAE + +S  T+ +++ +   K    NR +    AI 
Sbjct: 154 ELTPRELKVVKLVAQGMANRDIAEIMEVSQRTIESHVSNMLGKTGLHNRTELARWAIE 211


>gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 319

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVA 309


>gi|194289452|ref|YP_002005359.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223287|emb|CAQ69292.1| putative Prolyl aminopeptidase, LuxR DNA binding domain C_term
           [Cupriavidus taiwanensis LMG 19424]
          Length = 366

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           +          +V          R  A   LT RE   ++L   G  + +IA  L L   
Sbjct: 272 DTEPAWRRWLEEVRAFLPSAQPARCPAFTALTRRERDIVELIAQGRDNAQIAAHLDLCEK 331

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  ++ S   KL+  NR QAI  A + G+
Sbjct: 332 TVRNHITSIFAKLEVENRGQAIVLARKAGF 361


>gi|253699733|ref|YP_003020922.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251774583|gb|ACT17164.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ------VITDFLELFKKRSSAA 171
           ++   R G          S  L+ A   +               V      L +  +   
Sbjct: 90  VSQAFRAGARGYLLKDCASAELVQAVRQVACGEMYVCHGIIGVVVHDYVTRLPESLTQPE 149

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   LQL  +G  ++  A +L ++V TV+ +      KL   +  +    AIR 
Sbjct: 150 VPLTPREREVLQLIAEGNNAKNAAYQLNINVKTVDTHRQQIMKKLKMRSVAELTKYAIRE 209

Query: 232 GYI 234
           G I
Sbjct: 210 GLI 212


>gi|163747623|ref|ZP_02154970.1| probable transcription regulator protein [Oceanibulbus indolifex
           HEL-45]
 gi|161379093|gb|EDQ03515.1| probable transcription regulator protein [Oceanibulbus indolifex
           HEL-45]
          Length = 241

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 33/70 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           +L    +    +LT R+   L    +G++++EIA  L LS  TV +++     KL   NR
Sbjct: 156 QLLAAENPDNPDLTRRQYEVLYALANGHSNKEIARDLELSEATVKSHVRQVMRKLHVDNR 215

Query: 222 IQAIAKAIRF 231
            QA   A   
Sbjct: 216 TQAALLARDL 225


>gi|146307690|ref|YP_001188155.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145575891|gb|ABP85423.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 213

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                Y++ +S    L   + + A G  +       EL +      + L+ RE   LQ A
Sbjct: 101 AGAQAYLLKSSLRKELVETIRLVAAGKRHIPAEIAAELAEHIG--QQCLSPREVEVLQAA 158

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             GY++ +IA +L ++  TV  ++     KL A NR  A+A A++ G +
Sbjct: 159 ALGYSNRDIALQLRITEDTVKGHMRLIMDKLGANNRTHAVAIAVQRGVL 207


>gi|82544494|ref|YP_408441.1| DNA-binding transcriptional regulator CsgD [Shigella boydii Sb227]
 gi|157160562|ref|YP_001457880.1| DNA-binding transcriptional regulator CsgD [Escherichia coli HS]
 gi|170020563|ref|YP_001725517.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ATCC
           8739]
 gi|188492464|ref|ZP_02999734.1| transcriptional regulator CsgD [Escherichia coli 53638]
 gi|300918637|ref|ZP_07135219.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|312971173|ref|ZP_07785351.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1827-70]
 gi|81245905|gb|ABB66613.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Shigella boydii Sb227]
 gi|157066242|gb|ABV05497.1| transcriptional regulator CsgD [Escherichia coli HS]
 gi|169755491|gb|ACA78190.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739]
 gi|188487663|gb|EDU62766.1| transcriptional regulator CsgD [Escherichia coli 53638]
 gi|300414180|gb|EFJ97490.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|309701312|emb|CBJ00613.1| probable csgab operon transcriptional regulator [Escherichia coli
           ETEC H10407]
 gi|310336375|gb|EFQ01561.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1827-70]
 gi|323937781|gb|EGB34045.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|332094032|gb|EGI99084.1| putative csgAB operon transcriptional regulatory protein [Shigella
           boydii 3594-74]
          Length = 216

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|163940925|ref|YP_001645809.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863122|gb|ABY44181.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 595

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 508 QGMSHKIFEKFDEQIETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 568 YASTAYTKLGVRNKEEAVQKALEIGII 594


>gi|329934424|ref|ZP_08284503.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329306020|gb|EGG49875.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 227

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETS 180
           V      +G  +  S   +LA           +      +      + AA   LT RE  
Sbjct: 107 VHAAELLSGIRVVASGESVLAPSATRRL--IGHYASGPGVRTPDPEAPAALETLTAREHD 164

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L+L   G T+ EIA  LG++V TV +++ +   KL+  +R+QA   A   G 
Sbjct: 165 VLRLIASGLTNAEIAGHLGIAVGTVKSHVNAVLRKLELRDRVQATILAYDLGL 217


>gi|317125093|ref|YP_004099205.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589181|gb|ADU48478.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 238

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 55/222 (24%), Gaps = 12/222 (5%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             +       +   +    F +            +    E      D   +   L    G
Sbjct: 21  ADDHPMWRDAVARDLVEAGFDVVATADDGHGAVNRTRATE-----PDVLVLDLHLPGLTG 75

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
            +       G  P   ++           +  +         AG    +     +  ++ 
Sbjct: 76  AEVCARLAQGSRPGRPRTRILILSASGDSKDVLEA-----VKAGALGYLVKSAGREEFLA 130

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTS 191
                            G                    A   LT+RET  L+    G   
Sbjct: 131 AVRSTAAGEPVFTARLAGLVLGEFRRVRSEAADSASRRAVPELTDRETEILKYVATGMGY 190

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +EIA  L LS  TV  ++ +   KL   NR++    A   G 
Sbjct: 191 KEIAAALFLSHRTVQNHVQNIFGKLHLNNRVELARFAYERGI 232


>gi|297161015|gb|ADI10727.1| transcriptional regulator, LuxR family protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 257

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 22/232 (9%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL---HNYDLDSGDIPNILIETYG 73
           ++     +   + A       +   +    R Q            L +G+I   +  +  
Sbjct: 24  VADLAEGLLRVVGAD-----CVCIDICRAWRTQTPSVTMAGEPNALSAGEIDQWMALSAD 78

Query: 74  DDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
           D ++ +  +   P  +++    T        +   +         +    R+       +
Sbjct: 79  DPYIGNLLATGDPRPYRTSDFMTFNRFRQTLVYQEVFAQYGMRHLLVMTPRITDEDLVLI 138

Query: 133 IFTSEFLMLANEVIIEAHGA-------------CYQVITDFLELFKKRSSAARNLTERET 179
             T      ++      H                  +  +              LTERE 
Sbjct: 139 GLTRRLHDFSDRETRALHPIRDLIATALDYQAKVTAIQAEISAGPPAAPPRRCTLTEREN 198

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L L   G+T+++ A KLG+S  T+  +L     K +  +R  A+A  +R 
Sbjct: 199 QVLALIATGHTNDQAARKLGISPRTIRKHLEGVFSKANVPSRAAAVAWWLRQ 250


>gi|256420776|ref|YP_003121429.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035684|gb|ACU59228.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 211

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               Q+I D     KK       LT RE   LQL  D +T++EIA+KL LS+HTV  +  
Sbjct: 129 ALNQQLIEDMFR-NKKSEKKNTALTRREKEVLQLIIDEHTNQEIADKLFLSLHTVENHRI 187

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KL+  N    +  A++ G +
Sbjct: 188 SLLHKLEVKNTAGLVKVALQTGLV 211


>gi|153835526|ref|ZP_01988193.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
 gi|148867896|gb|EDL67113.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
          Length = 212

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G++S++IA  L +S  TV  +  +   KLD  +  +    A   G
Sbjct: 150 PLSRREEAVLKLVAQGHSSKKIATLLDISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209

Query: 233 Y 233
            
Sbjct: 210 L 210


>gi|89093728|ref|ZP_01166675.1| two-component transcriptional regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
 gi|89082124|gb|EAR61349.1| two-component transcriptional regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
          Length = 303

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 31/56 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           TERE+  L    +G T+ EIAE LG+S  TVN +L     KL   NR  A   A+R
Sbjct: 242 TERESEVLHWIANGKTNREIAEILGMSPRTVNKHLEQLFPKLGVENRTAAAGVALR 297


>gi|317506347|ref|ZP_07964159.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255357|gb|EFV14615.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 225

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 3/118 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +             S   + +  +   A        +  +      +  
Sbjct: 106 RAGARGYVTKSISGDDLAESVRRVASGDAVFSPGL---AGFVLDAFASAAVAEEPVSNPD 162

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             +LT RE   L+L   GYT  EIA +L +SV TV  +  +   K    NR      A
Sbjct: 163 LDSLTPRELDVLRLLARGYTYREIASELFISVKTVETHTSNVLRKTQQSNRNALTWWA 220


>gi|302546395|ref|ZP_07298737.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464013|gb|EFL27106.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 223

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 44/121 (36%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG +  +      +  V          + +   A  A                +    
Sbjct: 100 LRAGASGFLLKRARADDLVQAVRLVARSDSLLFPAAVRALAAEHAAAAGGRDAARALRDR 159

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L+L   G ++ EIA +L +   TV  ++ +   KL   +R QA+  A   G+
Sbjct: 160 LSEREADVLRLMAAGLSNAEIAARLTVGPATVKTHVAAVLGKLGVRDRTQAVIAAYECGF 219

Query: 234 I 234
           +
Sbjct: 220 V 220


>gi|194428408|ref|ZP_03060948.1| transcriptional regulator CsgD [Escherichia coli B171]
 gi|260843280|ref|YP_003221058.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|194413460|gb|EDX29742.1| transcriptional regulator CsgD [Escherichia coli B171]
 gi|257758427|dbj|BAI29924.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|323163719|gb|EFZ49538.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli E128010]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|182439137|ref|YP_001826856.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467653|dbj|BAG22173.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 244

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L     G++++ IAE+L +S  TV  ++  A  KL A +R Q +  
Sbjct: 173 AERLAALTGREREVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVI 232

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 233 AYESGLV 239


>gi|83310970|ref|YP_421234.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945811|dbj|BAE50675.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 213

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 155 QVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            V  +F  L  K ++ A         T RE   L L   G +++EIA +L L   T+  +
Sbjct: 123 YVPAEFAALPSKPAAPATPTLDPSLFTSREMEVLALIVAGASNKEIARQLDLQEVTIKLH 182

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     KL   NR  A   A+R G +
Sbjct: 183 LTRIFQKLGVKNRSHAAVTAVRGGLV 208


>gi|291543163|emb|CBL16273.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus bromii L2-63]
          Length = 212

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+    G T+ EIA++L ++  TV  Y+     K    +R +   KA   G +
Sbjct: 144 TERELEVLRELTSGDTNTEIAKRLYIAPGTVKNYIQYMLEKTGFKSRTELAVKAREAGLV 203


>gi|325678873|ref|ZP_08158471.1| transcriptional regulator, LuxR family [Ruminococcus albus 8]
 gi|324109377|gb|EGC03595.1| transcriptional regulator, LuxR family [Ruminococcus albus 8]
          Length = 209

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 42/89 (47%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +++   A   V        K   + +   TERE   L++   G T++++AE+LG+S +T
Sbjct: 116 EVMDRTMAGDHVYPRSSPTVKLGLADSSEFTERELEILRVVTTGATNQQVAEQLGISENT 175

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V +++ S   K    +R +   KA   G 
Sbjct: 176 VKSHVRSMLDKTGFRSRTELAIKARVIGI 204


>gi|268610385|ref|ZP_06144112.1| response regulator [Ruminococcus flavefaciens FD-1]
          Length = 208

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERET  ++L  DG  ++EIA KL L+  TV   +     KL+  +R Q    AI+  
Sbjct: 147 GLTERETEFIRLICDGCDNKEIAAKLFLAEGTVRNGISRLLEKLELKDRTQLAVFAIKNN 206

Query: 233 YI 234
            +
Sbjct: 207 IV 208


>gi|255525483|ref|ZP_05392420.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296188583|ref|ZP_06856971.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255510848|gb|EET87151.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296046847|gb|EFG86293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 214

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ERET   ++   G+ +++IA  L +S  TV  Y+ +   KL   +R  A   
Sbjct: 155 ELSERETEIAKMLSMGFNNKQIASSLFISEGTVKNYISNIYSKLGTSDRTSAAIM 209


>gi|257056288|ref|YP_003134120.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256586160|gb|ACU97293.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 239

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            + + +   ++ S     L+E+E + L L G+G T+ EIA +L L+  TV  Y+     K
Sbjct: 133 ALMNRIRREREESDPVSGLSEQERAVLDLIGEGLTNREIAARLYLAEKTVKNYVSRLLGK 192

Query: 216 LDAVNRIQAIAKAIRF 231
           L    R QA   A   
Sbjct: 193 LGMQRRTQAAVLATEL 208


>gi|224369897|ref|YP_002604061.1| two-component response regulator protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223692614|gb|ACN15897.1| two-component response regulator protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 218

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLE-----LFKKRSSAARNLTER 177
               G+++ TS    L   +++ A      C + +   +E        K     + LT R
Sbjct: 100 AGAKGFLLKTSSLEDLHTAILMVASGKSYLCPEALNIMMEDIQTPGDTKLLCPLQRLTLR 159

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   +QL  +GYTS+EI+EKL +S  TV+ +  +   KL           A++ G I
Sbjct: 160 ERGVIQLIAEGYTSQEISEKLNISKRTVDVHRTNTMNKLKIHTIAGLTRFAVKEGLI 216


>gi|261408559|ref|YP_003244800.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. Y412MC10]
 gi|261285022|gb|ACX66993.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. Y412MC10]
          Length = 902

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L+L   G ++ +I+EKL +++ TV  +      KL A  R +A+A+A   
Sbjct: 840 EPLSRRELEVLRLIAQGLSNRQISEKLFVALSTVKGHNRIIFDKLQATRRTEAVARAREL 899

Query: 232 GYI 234
           G +
Sbjct: 900 GLL 902


>gi|149200778|ref|ZP_01877753.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149145111|gb|EDM33137.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 202

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            ++    +LTE+E   L+LA DG T++EIA  +G +  T+  ++ S   KL+A NR  A 
Sbjct: 134 DKAGPEHDLTEKELFVLRLAADGLTNKEIARDMGTNEVTIKMHMRSICKKLNARNRAHAA 193

Query: 226 AKAIRFGYI 234
             +     I
Sbjct: 194 MISRERALI 202


>gi|110833289|ref|YP_692148.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110646400|emb|CAL15876.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +          +       K  S +  +LT+RE   L++   G  + +IA  L LS HT
Sbjct: 129 ELWFPRAVLQTYLMKSRTFNKTFSRSEVSLTDREVEVLKVMATGAKNSDIACSLNLSPHT 188

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +  ++ +   K++A NR+QA+  A   
Sbjct: 189 IKTHIYNIFKKINASNRLQAVNWAQEN 215


>gi|86608718|ref|YP_477480.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557260|gb|ABD02217.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 198

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 9/162 (5%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           + +  S   PI    +              ++    LP   +                  
Sbjct: 42  VQYCRSC--PIDVAILDVRMPDGDGIAACQQITELGLPVVVVMMTTFQEPGLIEAARRAG 99

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSE 192
               L+ E          +VI   L   ++    AR     LT RE   LQL  +G  ++
Sbjct: 100 AKGYLSKETDPA---ELARVIRQILSNPERDWLPARQELPKLTPRELCVLQLMKEGLANK 156

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +IA +LGLS+ TV  Y  +A  KLDA +R+ A+ KA + G +
Sbjct: 157 QIARRLGLSIETVKEYASTAYRKLDASDRVTALLKAQQLGIL 198


>gi|332995301|gb|AEF05356.1| putative LuxR family transcriptional regulator [Alteromonas sp.
           SN2]
          Length = 103

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               L++RE    +   +G +++ IA +L +S  TV  +  +   KL   +R   IA
Sbjct: 34  PIDTLSKRELQVARKIMEGLSNKAIAAELFISERTVKFHCANIYKKLKISSRTALIA 90


>gi|284008488|emb|CBA74985.1| two-component system, NarL family, nitrate/nitrite response
           regulator [Arsenophonus nasoniae]
          Length = 206

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
              +LT+RE   L+   +G  + EI++ L +S  TV  ++ +   KL+  +R++A
Sbjct: 144 PLSSLTKREFEVLREIANGLKNREISKYLFISEETVKVHIRNLLKKLNVRSRLEA 198


>gi|260072623|gb|ACX30521.1| two-component system nitrate/nitrite response regulator [uncultured
           SUP05 cluster bacterium]
 gi|269468662|gb|EEZ80302.1| two component LuxR family transcriptional regulator [uncultured
           SUP05 cluster bacterium]
          Length = 209

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 155 QVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            V+   L         +  +LT RE         G++++ IA +LG+S  TV  ++ S  
Sbjct: 128 HVLAKVLRNELTDSEPSFDSLTNREKEVSCQVAIGHSNKVIARELGISDGTVKLHVKSIL 187

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KL   +R++        GY
Sbjct: 188 KKLSLSSRVEVAVMVTEKGY 207


>gi|302539071|ref|ZP_07291413.1| two component system response regulator [Streptomyces sp. C]
 gi|302447966|gb|EFL19782.1| two component system response regulator [Streptomyces sp. C]
          Length = 230

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 38/111 (34%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
             G       I  +       +  ++A                       +LT RE   L
Sbjct: 119 NAGRQDITRAIRAAAAGQSVLDREVQARLLATVKTQAPPPGGPLPLPLPEDLTRREREVL 178

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L G G  +  IAE+L +S  TV  ++ +   K    +R  A+ +AI  G 
Sbjct: 179 ALIGQGLPNRGIAEQLFISEATVKTHINNLFAKAGIRDRADAVRRAIASGL 229


>gi|297191286|ref|ZP_06908684.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718427|gb|EDY62335.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 18/160 (11%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152
                     + + ++         I              +       L  ++ ++   A
Sbjct: 55  DIRMPGTDGIEATRQITERHDGTHVIVLTTFDDDDCVYGALRAGAAGYLVKDMALDDILA 114

Query: 153 CYQVI------------TDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEI 194
             +V+               +  F  R + A        +T+RE   L L G G ++ EI
Sbjct: 115 AVRVVAAGDGLISPAVTRRLIREFAGRPAGAGPKRELAGITDREREVLTLVGSGLSNSEI 174

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L +SV T   Y+     KL A +R++ +  A   G +
Sbjct: 175 AEALFISVATAKTYVTRLLSKLGARDRVRLVIIAYETGLV 214


>gi|189402762|ref|ZP_03006834.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4486]
 gi|300938742|ref|ZP_07153464.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|189364696|gb|EDU83115.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4486]
 gi|300456315|gb|EFK19808.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|323975265|gb|EGB70369.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 94  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 150

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 151 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 210

Query: 227 K 227
           +
Sbjct: 211 R 211


>gi|307332414|ref|ZP_07611482.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306881948|gb|EFN13066.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 240

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ A   + E       ++    L+ F    +         LT
Sbjct: 122 IRGGARGYVTKTITGTDLVDAIFRVSEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 181

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 182 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 240


>gi|301017700|ref|ZP_07182371.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300400050|gb|EFJ83588.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 94  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 150

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 151 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 210

Query: 227 K 227
           +
Sbjct: 211 R 211


>gi|288920973|ref|ZP_06415266.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288347607|gb|EFC81891.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 226

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 10/127 (7%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
             G  +   G+   VR        +   +   ++A           +  I +        
Sbjct: 104 FLGKDVEADGLLAAVRTVAAGEALLSPAATRALIAQ----------FVAIPEPTATAAAS 153

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +A   LT RE   + LA +G++++EIA KL +S  T   ++  A  KLDA +R Q +  
Sbjct: 154 HAALDTLTAREREVMILAAEGHSNQEIAAKLVISPLTARTHVHRAMAKLDARDRAQLVVI 213

Query: 228 AIRFGYI 234
           A + G +
Sbjct: 214 AYQTGLL 220


>gi|55980999|ref|YP_144296.1| response regulator [Thermus thermophilus HB8]
 gi|55772412|dbj|BAD70853.1| response regulator [Thermus thermophilus HB8]
          Length = 192

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 153 CYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
             ++    L + +      +     LT RE   L+L  +G +++EIA  L LS  TV ++
Sbjct: 106 APELKRRLLRIRQGEERLTAPDIPALTPREEEVLRLLAEGLSTKEIARALRLSPETVRSH 165

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L S   KL+A NR++A+++A   G++
Sbjct: 166 LESLYAKLEARNRVEALSRARSLGFL 191


>gi|297563606|ref|YP_003682580.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848054|gb|ADH70074.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 252

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              T+RE   + L   G ++ EIA  LGLS  T+ +++ S   K    NR+Q +  A R 
Sbjct: 181 EQFTDREKDVVALVATGASNAEIAGVLGLSETTIKSHVSSVLAKRGLRNRVQLVVWAFRS 240

Query: 232 GYI 234
           G +
Sbjct: 241 GLV 243


>gi|239930346|ref|ZP_04687299.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291438691|ref|ZP_06578081.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341586|gb|EFE68542.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 219

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-RSSAARNLT 175
           LG   +GYV+ +     L         G       A   +I ++L+L +  R+   + +T
Sbjct: 99  LGAGASGYVLKSVADRDLVEACRATMRGEPFLYPGAVNALIRNYLDLARDGRNLPPKAIT 158

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L  +G TS++IA+ L +S  TV  +  +   KL   +R++    AIR G I
Sbjct: 159 DREEEILKLVAEGNTSQQIADLLVISPKTVERHRANLLSKLGLKDRLELTRYAIRVGLI 217


>gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900]
          Length = 319

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVA 309


>gi|120601720|ref|YP_966120.1| two component LuxR family transcriptional regulator [Desulfovibrio
           vulgaris DP4]
 gi|120561949|gb|ABM27693.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris DP4]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                +  +S    L++RE   L+L  +G+ ++ +AEKL +S  TV  +  +   KL   
Sbjct: 139 LRHGRRDEASMLDLLSDREKQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTA 198

Query: 220 NRIQAIAKAIRFGY 233
           +  + +  AI  G 
Sbjct: 199 STAELVTFAIEHGL 212


>gi|293400727|ref|ZP_06644872.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305753|gb|EFE46997.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 205

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L +RE   + L  +G  ++EIAE L LS  TV  YL +   KL   +R Q      + 
Sbjct: 146 LNDREQQFISLVANGLNNKEIAETLFLSEGTVRNYLSNLLDKLGLRDRTQLAIFFYQH 203


>gi|229110649|ref|ZP_04240214.1| Two-component protein Kinase [Bacillus cereus Rock1-15]
 gi|229128492|ref|ZP_04257471.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4]
 gi|228654995|gb|EEL10854.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4]
 gi|228672822|gb|EEL28101.1| Two-component protein Kinase [Bacillus cereus Rock1-15]
          Length = 592

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F    +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDAQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAVQKALEIGII 591


>gi|325277057|ref|ZP_08142715.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097807|gb|EGB95995.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 491

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFL---ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194
                V+ +A      +I        +   R   A   +LT RE   L L  +G   +EI
Sbjct: 390 EAIETVMQDASWFSQTLIEKLANAKRINTGRLPDASFTDLTRRERDVLALICEGLADKEI 449

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L L+++TV  ++ +   KLD  +R +AI  A     
Sbjct: 450 AARLNLALNTVRNHVATVYSKLDVHSRSEAIVWARERRL 488


>gi|293409411|ref|ZP_06652987.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469879|gb|EFF12363.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|302549213|ref|ZP_07301555.1| two-component system regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466831|gb|EFL29924.1| two-component system regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            +    E ++        +     +     S+A   LT RE   + LA  G ++++IA  
Sbjct: 118 RVAARGEALLAPSITRKLIHRYVTQPPPTTSAALEELTSREREAVALAARGLSNDQIAGH 177

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +S  T   ++  A  KL A +R Q +  A   G +
Sbjct: 178 MVISPMTAKTHINRAMTKLHAHDRAQLVVLAYESGLV 214


>gi|237722799|ref|ZP_04553280.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229447321|gb|EEO53112.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 257

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L+L   G  S+EIA+KL +S+HTVN +  +   KL   N I+AI      G +
Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256


>gi|146307562|ref|YP_001188027.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
 gi|145575763|gb|ABP85295.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
          Length = 904

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   + LA  G ++EEI ++L L++ TV  +L +   KL   NR QAI +A   
Sbjct: 840 EGLTEREREVVCLAAKGLSNEEIGQQLSLALGTVKWHLHNIYEKLKVRNRTQAIRRAREL 899

Query: 232 GYI 234
             +
Sbjct: 900 SLL 902


>gi|30021317|ref|NP_832948.1| two-component protein kinase [Bacillus cereus ATCC 14579]
 gi|218232352|ref|YP_002367934.1| Two-component protein Kinase [Bacillus cereus B4264]
 gi|29896871|gb|AAP10149.1| Two-component protein Kinase [Bacillus cereus ATCC 14579]
 gi|218160309|gb|ACK60301.1| Two-component protein Kinase [Bacillus cereus B4264]
          Length = 595

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F    +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 508 QGMSHKIFEKFDAQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 568 YASTAYTKLGVRNKEEAVQKALEIGII 594


>gi|16764498|ref|NP_460113.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62179660|ref|YP_216077.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614644|ref|YP_001588609.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167553080|ref|ZP_02346830.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993996|ref|ZP_02575088.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168234058|ref|ZP_02659116.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237217|ref|ZP_02662275.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168822574|ref|ZP_02834574.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469443|ref|ZP_03075427.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737293|ref|YP_002114139.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249466|ref|YP_002146903.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262382|ref|ZP_03162456.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243879|ref|YP_002215996.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389724|ref|ZP_03216335.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930806|ref|ZP_03221679.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|207857350|ref|YP_002244001.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584353|ref|YP_002638151.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911038|ref|ZP_04654875.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|6014730|sp|O54294|CSGD_SALTY RecName: Full=Probable csgAB operon transcriptional regulatory
           protein
 gi|2739237|emb|CAA05315.1| CsgD protein [Salmonella typhimurium]
 gi|16419657|gb|AAL20072.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127293|gb|AAX64996.1| putative transcriptional regulator (LuxR/UhpA family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364008|gb|ABX67776.1| hypothetical protein SPAB_02394 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455807|gb|EDX44646.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194712795|gb|ACF92016.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197213169|gb|ACH50566.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240637|gb|EDY23257.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197289893|gb|EDY29254.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938395|gb|ACH75728.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602169|gb|EDZ00715.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320265|gb|EDZ05469.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205322437|gb|EDZ10276.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328037|gb|EDZ14801.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205331948|gb|EDZ18712.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341044|gb|EDZ27808.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206709153|emb|CAR33486.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224468880|gb|ACN46710.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246354|emb|CBG24163.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992909|gb|ACY87794.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157683|emb|CBW17175.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912129|dbj|BAJ36103.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320086418|emb|CBY96191.1| Transcriptional regulatory protein uhpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223757|gb|EFX48820.1| Transcriptional regulator CsgD for 2nd curli operon [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322616512|gb|EFY13421.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619764|gb|EFY16639.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622541|gb|EFY19386.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629692|gb|EFY26467.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632588|gb|EFY29334.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636917|gb|EFY33620.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641545|gb|EFY38183.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644846|gb|EFY41380.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649699|gb|EFY46129.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653990|gb|EFY50313.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658522|gb|EFY54784.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663380|gb|EFY59582.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670114|gb|EFY66254.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674821|gb|EFY70912.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676708|gb|EFY72775.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682630|gb|EFY78649.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686312|gb|EFY82294.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322714130|gb|EFZ05701.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323129411|gb|ADX16841.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195731|gb|EFZ80907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199879|gb|EFZ84968.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203139|gb|EFZ88169.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209142|gb|EFZ94079.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209647|gb|EFZ94576.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217898|gb|EGA02613.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222185|gb|EGA06569.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224956|gb|EGA09214.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229700|gb|EGA13823.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232925|gb|EGA17021.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240660|gb|EGA24702.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242973|gb|EGA26994.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247665|gb|EGA31610.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252666|gb|EGA36504.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255707|gb|EGA39459.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261744|gb|EGA45316.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266904|gb|EGA50389.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269946|gb|EGA53395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326623745|gb|EGE30090.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628199|gb|EGE34542.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332988033|gb|AEF07016.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|16129003|ref|NP_415558.1| DNA-binding transcriptional activator for csgBA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107885|ref|AP_001665.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli str. K-12 substr. W3110]
 gi|170080692|ref|YP_001730012.1| DNA-binding transcriptional regulator of adhesion determinants
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238900295|ref|YP_002926091.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|256023262|ref|ZP_05437127.1| DNA-binding transcriptional regulator CsgD [Escherichia sp.
           4_1_40B]
 gi|300950131|ref|ZP_07164076.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300954426|ref|ZP_07166878.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301644945|ref|ZP_07244913.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|307137675|ref|ZP_07497031.1| DNA-binding transcriptional regulator CsgD [Escherichia coli H736]
 gi|331641579|ref|ZP_08342714.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H736]
 gi|1706166|sp|P52106|CSGD_ECOLI RecName: Full=CsgBAC operon transcriptional regulatory protein
 gi|1147562|emb|CAA62280.1| putative regulatory protein [Escherichia coli K-12]
 gi|1787277|gb|AAC74124.1| DNA-binding transcriptional activator for csgBA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062613|dbj|BAA35830.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli str. K12 substr. W3110]
 gi|169888527|gb|ACB02234.1| DNA-binding transcriptional regulator of adhesion determinants
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238860897|gb|ACR62895.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|260449819|gb|ACX40241.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|300318576|gb|EFJ68360.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300450478|gb|EFK14098.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|301076735|gb|EFK91541.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|323942508|gb|EGB38675.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|331038377|gb|EGI10597.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H736]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|145224429|ref|YP_001135107.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|145216915|gb|ABP46319.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                      +   L    +R+     LT++E   L L G+G T+++IA ++ L+  TV
Sbjct: 122 RSLLDNRAAAALMAKLRGEGERTDPLSGLTDQERVLLDLLGEGLTNKQIAARMFLAEKTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAK 227
             Y+     KL    R QA   
Sbjct: 182 KNYVSRLLAKLGMERRTQAAVF 203


>gi|296503059|ref|YP_003664759.1| two-component protein kinase [Bacillus thuringiensis BMB171]
 gi|296324111|gb|ADH07039.1| two-component protein kinase [Bacillus thuringiensis BMB171]
          Length = 319

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLE--LFKKRSSAAR-N 173
           +R G          S  L  +  ++        H   +++  +  E  LF+ RS      
Sbjct: 198 IRNGADGYVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGIEYG 257

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L+L   G   + IA  L LS  TV  Y  +   KL   NR +A+ KA   G 
Sbjct: 258 LSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 317

Query: 234 I 234
           +
Sbjct: 318 L 318


>gi|255264294|ref|ZP_05343636.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62]
 gi|255106629|gb|EET49303.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62]
          Length = 214

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE S L     G +++E+A  L +SV TV  +  +   KL           A+ 
Sbjct: 144 ASALTNREQSILLQLAQGKSNKEVAIDLEISVRTVETHRKNIKRKLGISTTAGLTRYAME 203

Query: 231 FGYI 234
            G +
Sbjct: 204 NGVL 207


>gi|238025165|ref|YP_002909397.1| response regulator, NarL family protein [Burkholderia glumae BGR1]
 gi|237879830|gb|ACR32162.1| Response regulator, NarL-family protein [Burkholderia glumae BGR1]
          Length = 238

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  +  +    L+ RE   L +   G T+ EI+E L LS  TV  ++ +   KL   +R 
Sbjct: 166 LPSRDGAPPVRLSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRT 225

Query: 223 QAIAKAIRFGYI 234
           QA+ +A   G +
Sbjct: 226 QAVFEARAHGLL 237


>gi|242280104|ref|YP_002992233.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242122998|gb|ACS80694.1| transcriptional regulator, LuxR family [Desulfovibrio salexigens
           DSM 2638]
          Length = 406

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE     L   G   +E+A +L ++ +T + Y      KL+  +  + I  A+R G 
Sbjct: 346 LSPREYQVFLLLIQGKRIKEVANELDITGNTASTYRSRIMKKLNISSITELIQYAMRQGL 405

Query: 234 I 234
           I
Sbjct: 406 I 406


>gi|325970171|ref|YP_004246362.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324025409|gb|ADY12168.1| two component transcriptional regulator, LuxR family [Spirochaeta
           sp. Buddy]
          Length = 227

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                      E  +      + LT +E   +QL G G +++EI  ++  S  TV  Y+ 
Sbjct: 139 RLATTPFRSMQEPDE----TFKALTAQELRIMQLIGKGLSNKEIMTEVNFSEGTVRNYIS 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KLD  +R Q    AI+ G 
Sbjct: 195 NILKKLDLRDRTQIAILAIQSGL 217


>gi|299141082|ref|ZP_07034220.1| transcriptional regulator [Prevotella oris C735]
 gi|298578048|gb|EFI49916.1| transcriptional regulator [Prevotella oris C735]
          Length = 212

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 42/98 (42%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           + +  A +  +       Q + + L +  + +S    LT  E   L+    G T+ EIAE
Sbjct: 108 QEIREALDYAVRGRRFICQRMAEMLLVPMETASNRAKLTPTENEILKDIALGMTTREIAE 167

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           K   S HTVN +  +   KL      +A   A+R G +
Sbjct: 168 KRFSSFHTVNTHRKNIFRKLGVNTIHEATKYALRAGLV 205


>gi|297160212|gb|ADI09924.1| erythropoiesis-stimulating protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 339

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 6   LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65
           +  ++ S +  +  RL  + +   +               +  +        D    +  
Sbjct: 114 VDVEELSGIDMVRIRLEELAHDCTSEIMEF-----TTGGGQSAESRQASRPIDQGLLERG 168

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ--LSVRLEGGLLPFAGIAFPVR 123
             +   Y +  + H      P     +   T +    +   S+ L   +        P  
Sbjct: 169 VRMRCVYLESVVNH------PQTVSYLDWLTGLGCRVRVVPSLPLRMVVFDRQAAVVPSN 222

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                 G ++     L+ A   + E                +        LT +  + L 
Sbjct: 223 PEDTAVGALLLRGSGLVSALCALFEHIWEEAPPFGATRRRDEDT-----GLTSQARAVLS 277

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G+T E +A K+G+SV T          +L A +R QA   A   G++
Sbjct: 278 LLAQGHTDEVVARKMGISVRTARRITAELMTQLGARSRFQAGVIAGERGWL 328


>gi|291299253|ref|YP_003510531.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568473|gb|ADD41438.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 228

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIA 195
            ++   E ++        V        +   ++     +TERE   L L   G ++ EIA
Sbjct: 121 RVVANGESLLAPSVTRRLVAEFVARPHESTVASTDLAAVTEREREVLTLVARGLSNTEIA 180

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+L LS+ TV  ++G    KL A +R Q +  A   G +
Sbjct: 181 ERLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGLV 219


>gi|170725009|ref|YP_001759035.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810356|gb|ACA84940.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 221

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIA 195
             E+  +             +L     +   +      LT RE + + L   G  ++EIA
Sbjct: 118 EGELYFDRQLISQVFSRLVRKLDSANDTLQDSAVMMQMLTSRERTIISLVSSGARNKEIA 177

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +L +S HTV A++ S   K  + NR++ +  A
Sbjct: 178 HRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|320333696|ref|YP_004170407.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754985|gb|ADV66742.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 214

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEK 197
            +   E +++A      V+ DF +  +   S     L ERET+ L+L   GY++++IA +
Sbjct: 116 RVAGGEALLDADM-AQNVLDDFRDKREVLPSEKHADLNERETTILKLLAQGYSNQDIALR 174

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +S  TV   L     KL   NR QA   AIR G 
Sbjct: 175 LDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|315444762|ref|YP_004077641.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315263065|gb|ADT99806.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                      +   L    +R+     LT++E   L L G+G T+++IA ++ L+  TV
Sbjct: 122 RSLLDNRAAAALMAKLRGEGERTDPLSGLTDQERVLLDLLGEGLTNKQIAARMFLAEKTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAK 227
             Y+     KL    R QA   
Sbjct: 182 KNYVSRLLAKLGMERRTQAAVF 203


>gi|302522327|ref|ZP_07274669.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302431222|gb|EFL03038.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 265

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G ++ +IA  L +S  TV  ++ +   K    +R QA+  A   G 
Sbjct: 197 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 256

Query: 234 I 234
           +
Sbjct: 257 V 257


>gi|228991209|ref|ZP_04151167.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
 gi|228768433|gb|EEM17038.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
          Length = 438

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              ++  ++  + KK       LT RE   L    +G   +EIA KL LS  TV  Y  S
Sbjct: 359 VATRLFKEYSSMPKK---PPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASS 415

Query: 212 ATVKLDAVNRIQAIAKAI 229
             +KL    R +A+ KA+
Sbjct: 416 IYMKLQVSGRGEAVKKAL 433


>gi|167837198|ref|ZP_02464081.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           thailandensis MSMB43]
          Length = 90

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 21  DQLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVYAVER 80

Query: 232 GY 233
           G 
Sbjct: 81  GL 82


>gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 226

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 9/223 (4%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +       +   ++   F +  +    +AL++         + +  +   D    L  
Sbjct: 8   VDDEPGVREAVSAYLEDSGFEVTAVANAQAALEYLETHVPDVIITDIMMPQMDGYAFLET 67

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
                 L H       +  + +  + +          L     P   +A  ++    +  
Sbjct: 68  VRQQPHLSHIPVIF--LTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAI-IKNLLRRQA 124

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
                 +        + +       ++    +          +LT RE S LQL   G  
Sbjct: 125 A---ARDEAEPNLAELAQQIAELRAMLVQQGKRHPTAPPIQLDLTPREASVLQLVVKGLM 181

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++EIA +L  SV  +  Y+    VK    +R + +  A+  G 
Sbjct: 182 NKEIASQLNTSVRNIEKYVSRLFVKTGTSSRTELVRFALEHGL 224


>gi|238795683|ref|ZP_04639197.1| Two-component response regulator [Yersinia mollaretii ATCC 43969]
 gi|238720409|gb|EEQ12211.1| Two-component response regulator [Yersinia mollaretii ATCC 43969]
          Length = 210

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|313887441|ref|ZP_07821130.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923083|gb|EFR33903.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 201

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           +  + +I+      Q  T+ LE  + + +    L++RE   +     G T++EIA+ L L
Sbjct: 103 IEPQSLIQLIQEAEQPDTESLESEEAKQTP---LSQRECEVVTWVARGLTNKEIADVLHL 159

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S HTV  +  +   KLD  +       A+    I
Sbjct: 160 SPHTVVTHRRNIAAKLDIHSPSGLTIYALMNNLI 193


>gi|238792677|ref|ZP_04636309.1| Two-component response regulator [Yersinia intermedia ATCC 29909]
 gi|238728033|gb|EEQ19555.1| Two-component response regulator [Yersinia intermedia ATCC 29909]
          Length = 210

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 NHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|238757839|ref|ZP_04619021.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236]
 gi|238703824|gb|EEP96359.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236]
          Length = 211

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   L+L  DGYT+  I E+L +SV TV  +  +   KL+     + +  + R
Sbjct: 147 AEILTPRERQILRLIADGYTNRLIGERLCISVKTVETHRLNIMRKLNVHKVTELLNCSRR 206

Query: 231 FGY 233
            G 
Sbjct: 207 LGL 209


>gi|291299028|ref|YP_003510306.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568248|gb|ADD41213.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 151 GACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           G   +VI  F      R+        +LT RET  L     G +++EIAE+L +S  TV 
Sbjct: 131 GVTRRVIDRFTRGRHARTGEPHPGLDSLTARETEILGWVATGLSNDEIAERLVVSPATVR 190

Query: 207 AYLGSATVKLDAVNRIQAIAKAIR 230
            ++G A +KL A +R Q +  A R
Sbjct: 191 THVGRAMMKLRARDRAQLVVIAYR 214


>gi|227549911|ref|ZP_03979960.1| possible nitrate/nitrite response regulator protein NarP
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078007|gb|EEI15970.1| possible nitrate/nitrite response regulator protein NarP
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 215

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   L+L   GYT +EI  +L +SV TV  +  +   K    NR Q    A
Sbjct: 150 PLVDALTRRELEVLRLLARGYTYKEIGAQLFISVKTVETHASNILRKTQTSNRHQLTRWA 209

Query: 229 IRFGY 233
                
Sbjct: 210 ADRAL 214


>gi|193064557|ref|ZP_03045637.1| transcriptional regulator CsgD [Escherichia coli E22]
 gi|192927809|gb|EDV82423.1| transcriptional regulator CsgD [Escherichia coli E22]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|119714199|ref|YP_919341.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526108|gb|ABL79478.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 215

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            EL  + ++   +LT RE   L L   G+++ EIA +L +   TV  ++     KL   +
Sbjct: 142 RELRPEVAARLADLTSRERDVLVLLAQGHSNAEIAARLVVGEGTVKTHVAHVLAKLGVRD 201

Query: 221 RIQAIAKAIRFGYI 234
           R+QA+  A   G +
Sbjct: 202 RLQAVVSAFNAGVV 215


>gi|157374008|ref|YP_001472608.1| response regulator [Shewanella sediminis HAW-EB3]
 gi|157316382|gb|ABV35480.1| Response regulator containing a CheY-like protein receiver domain
           and an HTH DNA-binding domain-like protein [Shewanella
           sediminis HAW-EB3]
          Length = 321

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                + D   +  +  +    LT RE   +     G T ++IA  L LS  TV+ +L  
Sbjct: 236 FNQTRMGDLYRISLRIKNQLDELTTREKQIVAGVCKGGTFKQIARDLELSPSTVSNHLYR 295

Query: 212 ATVKLDAVNRIQAIAKA 228
             +KL    R + I  A
Sbjct: 296 IYMKLGIHTRSELILIA 312


>gi|33867217|ref|NP_898775.1| putative response regulator (IpbT) [Rhodococcus erythropolis]
 gi|33669051|gb|AAP74045.1| putative response regulator (IpbT) [Rhodococcus erythropolis]
          Length = 209

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L+ RE   ++L   G T+ EIAE+L +S  TV ++  S   KL    R +    A   
Sbjct: 146 DSLSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDA 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLL 208


>gi|119773784|ref|YP_926524.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766284|gb|ABL98854.1| two component transcriptional regulator, LuxR family [Shewanella
           amazonensis SB2B]
          Length = 209

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153
              L    +    +   V         ++              ++++E        H   
Sbjct: 69  LNGLRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKHAMLGHRVI 128

Query: 154 YQVITDFL---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            + + ++L   +     +     LT RE   L+   +G ++  I+E+L +S  TV  ++ 
Sbjct: 129 SEAVEEYLFELKNATDENEWIDALTPRELQILEQLAEGLSNRLISEQLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|329948190|ref|ZP_08295062.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328522923|gb|EGF50028.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 215

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   +QL   G ++ EIA  L +   TV ++L     K+ A +R+QA+  A R G 
Sbjct: 155 LTEREREVIQLLASGMSNAEIAAALVVETSTVKSHLTRILPKIGARDRVQAVVWAYRNGL 214


>gi|326385152|ref|ZP_08206820.1| two-component transcriptional regulatory protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196117|gb|EGD53323.1| two-component transcriptional regulatory protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 217

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           + A   ++    +  ++ +    + T++E + L L G+G T+ +IA+++ L+  TV  Y+
Sbjct: 128 NRAAAVLMERLRKQQEQDAGPLADFTQQERTLLALLGEGLTNRQIADRMHLAEKTVKNYV 187

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
                KL    R QA   A R G
Sbjct: 188 SRLLTKLGMERRTQAAVFATRIG 210


>gi|291085584|ref|ZP_06571117.1| putative csgAB operon transcriptional regulatory protein
           [Citrobacter youngae ATCC 29220]
 gi|291071350|gb|EFE09459.1| putative csgAB operon transcriptional regulatory protein
           [Citrobacter youngae ATCC 29220]
          Length = 159

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 99  LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 153


>gi|284990973|ref|YP_003409527.1| LuxR family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284064218|gb|ADB75156.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus
           DSM 43160]
          Length = 316

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142
              P I   +                         +A P+R+G     YV+   +     
Sbjct: 114 SSAPQILGRVPRAVAGPRLRAEWSAFARPFGITHQLALPLRVGQGIESYVVSRPDDDYDD 173

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIA 195
            +  + A                +   A +        LT RE + L+L G+G T++ IA
Sbjct: 174 ADADLAALVVPALAALVRQHRVLRDVPAEQYDCAYGIRLTRREFAVLRLLGEGLTAQAIA 233

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L  S  TV+ +L     KL   +R+ A+ +A   G +
Sbjct: 234 RRLRTSPRTVHKHLEHLYRKLGVRDRLMAVQRARDAGLL 272


>gi|256381033|ref|YP_003104693.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925336|gb|ACU40847.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 219

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           +         +   V+ G         ++E L+ A              +   +    +R
Sbjct: 82  VLSASGEHDDVLEAVKAGASGYLVKSASAEELVEAVNRTAAGDAVFTSGLAGLVLGEYRR 141

Query: 168 SSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +AA        LT+RET  L+L   G T+ +IA +L +S  TV  ++ S   KL   NR
Sbjct: 142 MAAAPDEVDRPQLTDRETEVLRLVAKGLTARQIATRLVISHRTVENHVQSTLRKLQLHNR 201

Query: 222 IQAIAKAIRFGY 233
           ++    AI  G 
Sbjct: 202 VELARYAIEHGL 213


>gi|160895160|ref|ZP_02075933.1| hypothetical protein CLOL250_02720 [Clostridium sp. L2-50]
 gi|156863194|gb|EDO56625.1| hypothetical protein CLOL250_02720 [Clostridium sp. L2-50]
          Length = 260

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 29/220 (13%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  I+  I   +   Y  +S       +       N D D  DI   +  + G       
Sbjct: 44  LEQIKTVIDFDSADFYLASSNEKENLERP---VFLNCDEDLSDIYENMDYSRG------I 94

Query: 81  NSGLLPIIWQSIQEETVIES-SGQLSVRLEGGLLPFAGI--AFPVRLGFHKNGYVIFTSE 137
                 ++++     +  +    +   R+         +   F     F     +  T  
Sbjct: 95  MFSGRSMVYRETDIISDEKRVQTEYYQRVYKPNNWHYALQMIFGRNKHFLGVVTLYRTIG 154

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------------LTERETSCLQ 183
                 E +         +      L + R++   +              LT+RE + LQ
Sbjct: 155 KEDFTYEDVFLMDMLKDHM---AYRLSQDRNNQMTSQEKLTLTQAVKTYDLTKREQTILQ 211

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           L   G  + EI + L ++V+T+  ++ +   KL   NR+Q
Sbjct: 212 LLLQGMENTEICDHLSITVNTLKKHILNIYRKLGIRNRVQ 251


>gi|187478442|ref|YP_786466.1| two-component response regulator [Bordetella avium 197N]
 gi|115423028|emb|CAJ49559.1| putative two-component response regulator [Bordetella avium 197N]
          Length = 225

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +++ +F      ++     L+ RE   L+L   G  + EIAE+L LS +TV  ++ 
Sbjct: 141 FLARRLLHEFRTPLVGQADNTGPLSPREAQILRLVASGLGNREIAEQLHLSRYTVERHVK 200

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R QAI  A   G +
Sbjct: 201 HVYRKLLVSSRTQAIHAARVRGLL 224


>gi|160895667|ref|YP_001561249.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160361251|gb|ABX32864.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 339

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 141 LANEVIIEAHGACYQVITD--FLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEE 193
                ++  H     +      L     ++ AAR L     T RET  L     G T+ +
Sbjct: 236 ADGRQLLARHMGASGLGESMVLLSHEAPQTPAARRLQQVALTPRETEVLSWLSKGKTNRD 295

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           IA+ LG+S  TVN +L     KL    R  A A A + 
Sbjct: 296 IADILGMSPRTVNKHLEHIFEKLGVETRTAAAAVAGQL 333


>gi|91786900|ref|YP_547852.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696125|gb|ABE42954.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 177

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL  + ++    L++R+   L +   G ++ +IAE+L +S HTV  +L     +L+  +R
Sbjct: 105 ELEPESATPTEKLSKRQKQLLVMLDKGMSNRDIAEELQISEHTVKVHLWRLFRRLNVKSR 164

Query: 222 IQAIAKAIRFGYI 234
            QA   A   G +
Sbjct: 165 SQASHLARTQGLL 177


>gi|56413870|ref|YP_150945.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168244733|ref|ZP_02669665.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168264076|ref|ZP_02686049.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168467083|ref|ZP_02700925.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194444624|ref|YP_002040395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194450147|ref|YP_002045140.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197362793|ref|YP_002142430.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56128127|gb|AAV77633.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|154269337|gb|ABS72185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden]
 gi|194403287|gb|ACF63509.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194408451|gb|ACF68670.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195630363|gb|EDX48989.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197094270|emb|CAR59776.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205336437|gb|EDZ23201.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205347328|gb|EDZ33959.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|327481896|gb|AEA85206.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 836

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 154 YQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            +++    E    +++     L+ RE + L+L   G +++EIAE+L +S+HTV  +    
Sbjct: 755 QRLLRYEREPETTQAATEETVLSNRELTVLRLIAQGCSNQEIAEQLFISLHTVKTHARRI 814

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL    R QA+AKA    ++
Sbjct: 815 NTKLGVARRTQAVAKAKALAWL 836


>gi|313903315|ref|ZP_07836707.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466403|gb|EFR61925.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +     LT R+   LQL   G ++ EIA +L LS  TV   +     +L   +R+Q
Sbjct: 180 RPAPAEQGEPLTPRQVEVLQLLARGVSNREIAARLHLSEGTVKNLVSEIYARLQVRDRVQ 239

Query: 224 AIAKAIRFGYI 234
           A+ +A   G++
Sbjct: 240 AVLRA--RGWL 248


>gi|296330376|ref|ZP_06872857.1| two-component response regulator (YvfT) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676019|ref|YP_003867691.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152644|gb|EFG93512.1| two-component response regulator (YvfT) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414263|gb|ADM39382.1| two-component response regulator (paired with YvfT) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 200

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+LA  G T+++I  +L LS  TV  Y+     KLDA NR +A + A   G
Sbjct: 139 PLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLDAKNRTEAASIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|284992446|ref|YP_003411000.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065691|gb|ADB76629.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 217

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 20/162 (12%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148
                +      + RL         +A             +           ++ + ++E
Sbjct: 56  DLHMPVLDGIAATRRLRVEQPGVRVLALTTFDDDEDVFAALRAGALGYLLKDVSADRLVE 115

Query: 149 AHGACYQ------------VITDFLELFK----KRSSAARNLTERETSCLQLAGDGYTSE 192
           A  A  +            V+  F +L      +       L++RE   L+L  DG ++ 
Sbjct: 116 AVQAAARGESVLQPSVAAKVVARFAQLDDAPRSRPQPLVVPLSDRELDVLRLLADGRSNR 175

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  L L+  TV  ++ +   KL A +R QA  +A     +
Sbjct: 176 EIATALFLAEGTVKNHVTNVLGKLGARDRTQAALRARALDLL 217


>gi|54022748|ref|YP_116990.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014256|dbj|BAD55626.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 219

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +                 LT RE   L+L  +GY+S  IA+ L +SV TV+ +  +   K
Sbjct: 139 IREWLQRTRAGTPPPDNILTAREEEILKLVAEGYSSRGIADTLVISVKTVDRHRANILQK 198

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R+     AIR G I
Sbjct: 199 LGLRDRLALTRYAIRVGLI 217


>gi|332299624|ref|YP_004441545.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176687|gb|AEE12377.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 201

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           +  + +I+      Q  T+ LE  + + +    L++RE   +     G T++EIA+ L L
Sbjct: 103 IEPQSLIQLIQEAEQPDTESLESEEAKQTP---LSQRECEVVTWVARGLTNKEIADVLHL 159

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S HTV  +  +   KLD  +       A+    I
Sbjct: 160 SPHTVVTHRRNIAAKLDIHSPSGLTIYALMNNLI 193


>gi|319795298|ref|YP_004156938.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597761|gb|ADU38827.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 198

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           E   A   ++    E   +   A+  L++R+T  + +   G ++ +IA  L +S HTV  
Sbjct: 110 ELAAALRGLLMAGSEEADEPPLASSKLSKRQTQLIAMLDKGMSNRDIATDLEISEHTVKV 169

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L     +L   +R QA+  A   G +
Sbjct: 170 HLWRLFRRLGVKSRTQALHYARTNGLL 196


>gi|302867924|ref|YP_003836561.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315505671|ref|YP_004084558.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570783|gb|ADL46985.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412290|gb|ADU10407.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 222

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RET  L+L   G ++ E+AE L LS  TV  ++     KL   +R+QA+  A   G 
Sbjct: 155 LTRRETEVLRLLAGGLSNAELAEALHLSEATVKTHVARILAKLRLRDRVQAVVVAYETGL 214

Query: 234 I 234
           +
Sbjct: 215 V 215


>gi|330999811|ref|ZP_08323516.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329573814|gb|EGG55403.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 211

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE    +L  +G  +++IA++LG++  TV  +  +   K    N   A+  A +  
Sbjct: 145 SLSPREQETARLIAEGLLNKQIADRLGITERTVQVHRANVFSKFGVRN---AVQFAQKLM 201

Query: 233 YI 234
            I
Sbjct: 202 LI 203


>gi|306832609|ref|ZP_07465748.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304425217|gb|EFM28344.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 227

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ E   +Q  G G +++EIA KL LS  TV  YL S   KL+  +R Q    A++ G
Sbjct: 158 SKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTG 215


>gi|256378541|ref|YP_003102201.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922844|gb|ACU38355.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 226

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                       +     +T RE   + L   G +++ IA  L LS  TV  ++  A  K
Sbjct: 139 AFVAQSRPPAVAAPGLDLVTGREREVMVLVAHGMSNDAIARHLFLSPLTVRTHVNRAMAK 198

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L A +R Q +  A +   +
Sbjct: 199 LGARDRAQLVVIAYQNRLV 217


>gi|209518938|ref|ZP_03267749.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. H160]
 gi|209500661|gb|EEA00706.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. H160]
          Length = 913

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 13/163 (7%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA---------GIAFPVRLGFHKNGY 131
               L + W S  + +         V++      +          G          ++  
Sbjct: 752 LRTTLALAWMSAGQVSEAIEVFGEVVKVAAPAGIYQSILDQGAGIGTLLQAMRNAARSAA 811

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
                          +              +    R      L+ RE+  + L   G ++
Sbjct: 812 GDPARTKDAANYIERLCDGWRALYQPASHTQRDADR----EALSARESEIVGLIAQGQSN 867

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EIA  LG++  TV +++ S  +KL+   R  A+++A   G +
Sbjct: 868 KEIARSLGIAPETVKSHVKSIFLKLEVDKRAHAVSRAQALGLL 910


>gi|331646293|ref|ZP_08347396.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M605]
 gi|320196482|gb|EFW71105.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli WV_060327]
 gi|330910850|gb|EGH39360.1| transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli AA86]
 gi|331045045|gb|EGI17172.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M605]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|295394642|ref|ZP_06804861.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972535|gb|EFG48391.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 228

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           +A G    V+ +  E   +  +    LTERE + L     G ++ EIA  LG+S  TV  
Sbjct: 135 DAAGFSRAVVAN--EAPGQTPADLYGLTEREEAILTQLCRGQSNYEIARFLGISEGTVKV 192

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ S   K +  +R++ + +A   G
Sbjct: 193 HITSIMKKANVRSRLELVVQAFNSG 217


>gi|291537551|emb|CBL10663.1| ATP-dependent transcriptional regulator [Roseburia intestinalis
           M50/1]
          Length = 787

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 14/147 (9%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
            W+      +  ++    +R              V         +   +     A    +
Sbjct: 651 RWRERLTAALDAATEYRFIR-----------TVSVYGTAV-LPLLEALNWDGDKAWSKRL 698

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A          +    + R +    LT  E   L L     ++ EIA+ + + + TV  
Sbjct: 699 MAAVRMQAAF--YPHFLESRLAPGEELTPTELQILHLICADKSNAEIAQIMDVKLPTVKT 756

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++     KLD   R +A   A +   I
Sbjct: 757 HVSHILDKLDVKRRAEARTAAKKLRLI 783


>gi|302540802|ref|ZP_07293144.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458420|gb|EFL21513.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 221

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G   ++I +F    K+ + A+    LTERE   + L G G ++EEIA +L +S  T   +
Sbjct: 130 GVTRRLIAEFAARSKEPAPASVLAELTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    VKL A +R Q +  A   G +
Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|160934711|ref|ZP_02082097.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753]
 gi|156866164|gb|EDO59536.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753]
          Length = 212

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + + ++   K   AAR ++ RE   + L   G +++EIAE L LS  TV  YL +   KL
Sbjct: 133 LPELMQSGDKFDFAARGVSPRELDVISLVAKGLSNKEIAEALFLSEGTVRNYLSAVLDKL 192

Query: 217 DAVNRIQAIAK 227
           +  +R Q    
Sbjct: 193 ELRDRTQLAVF 203


>gi|119469813|ref|ZP_01612651.1| putative csg operon transcription regulator (LuxR family) protein
           [Alteromonadales bacterium TW-7]
 gi|119446796|gb|EAW28068.1| putative csg operon transcription regulator (LuxR family) protein
           [Alteromonadales bacterium TW-7]
          Length = 229

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LTERETSCLQLAGDGY 189
            + ++ +        +  +D L +    +S   +          LT+RE S + L   G 
Sbjct: 119 RVTSDELWFTRKVISKAFSDILLVASSFNSLKDDITLKQDDYAHLTKREKSVIHLIAQGA 178

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           ++  IA+KL +S HTV  +L SA  K ++ NRI+    A R
Sbjct: 179 SNNTIADKLNISDHTVKTHLYSAFKKTNSRNRIELANWAQR 219


>gi|15801157|ref|NP_287174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 EDL933]
 gi|15830671|ref|NP_309444.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. Sakai]
 gi|26247175|ref|NP_753215.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           CFT073]
 gi|30062564|ref|NP_836735.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a
           str. 2457T]
 gi|56479799|ref|NP_706950.2| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a
           str. 301]
 gi|91210188|ref|YP_540174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UTI89]
 gi|110641216|ref|YP_668946.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 536]
 gi|110805049|ref|YP_688569.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 5
           str. 8401]
 gi|117623229|ref|YP_852142.1| DNA-binding transcriptional regulator CsgD [Escherichia coli APEC
           O1]
 gi|157155649|ref|YP_001462271.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           E24377A]
 gi|168747192|ref|ZP_02772214.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754516|ref|ZP_02779523.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760623|ref|ZP_02785630.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767694|ref|ZP_02792701.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773880|ref|ZP_02798887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783565|ref|ZP_02808572.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|168799314|ref|ZP_02824321.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC508]
 gi|191166943|ref|ZP_03028767.1| transcriptional regulator CsgD [Escherichia coli B7A]
 gi|193069453|ref|ZP_03050407.1| transcriptional regulator CsgD [Escherichia coli E110019]
 gi|194432391|ref|ZP_03064678.1| transcriptional regulator CsgD [Shigella dysenteriae 1012]
 gi|195935427|ref|ZP_03080809.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809483|ref|ZP_03251820.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815293|ref|ZP_03256472.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822315|ref|ZP_03262634.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396459|ref|YP_002269887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209918293|ref|YP_002292377.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SE11]
 gi|215486249|ref|YP_002328680.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217328252|ref|ZP_03444334.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218553618|ref|YP_002386531.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI1]
 gi|218557921|ref|YP_002390834.1| DNA-binding transcriptional regulator CsgD [Escherichia coli S88]
 gi|218688993|ref|YP_002397205.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ED1a]
 gi|218694575|ref|YP_002402242.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 55989]
 gi|218704448|ref|YP_002411967.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           UMN026]
 gi|227886606|ref|ZP_04004411.1| LuxR family protein [Escherichia coli 83972]
 gi|237706978|ref|ZP_04537459.1| transcriptional regulator for 2nd curli operon [Escherichia sp.
           3_2_53FAA]
 gi|254792423|ref|YP_003077260.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. TW14359]
 gi|256018703|ref|ZP_05432568.1| DNA-binding transcriptional regulator CsgD [Shigella sp. D9]
 gi|260854523|ref|YP_003228414.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|260867403|ref|YP_003233805.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|261227055|ref|ZP_05941336.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256289|ref|ZP_05948822.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282059|ref|YP_003498877.1| CsgD [Escherichia coli O55:H7 str. CB9615]
 gi|293404327|ref|ZP_06648321.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1412]
 gi|293433333|ref|ZP_06661761.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088]
 gi|298380106|ref|ZP_06989711.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1302]
 gi|300816738|ref|ZP_07096958.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300821183|ref|ZP_07101332.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300899554|ref|ZP_07117793.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300902427|ref|ZP_07120409.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300922561|ref|ZP_07138662.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300935178|ref|ZP_07150204.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300974342|ref|ZP_07172554.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300982659|ref|ZP_07176243.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|301023209|ref|ZP_07187008.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|301051178|ref|ZP_07198008.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|301305026|ref|ZP_07211128.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|301328594|ref|ZP_07221655.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|306814112|ref|ZP_07448285.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101]
 gi|307310181|ref|ZP_07589831.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|309794973|ref|ZP_07689393.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331652090|ref|ZP_08353109.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M718]
 gi|331657094|ref|ZP_08358056.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA206]
 gi|331662440|ref|ZP_08363363.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA143]
 gi|331667434|ref|ZP_08368298.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA271]
 gi|331672560|ref|ZP_08373349.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA280]
 gi|331676827|ref|ZP_08377523.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H591]
 gi|331682538|ref|ZP_08383157.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H299]
 gi|332279774|ref|ZP_08392187.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9]
 gi|12514569|gb|AAG55786.1|AE005314_14 putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. EDL933]
 gi|26107576|gb|AAN79775.1|AE016759_49 Probable csgAB operon transcriptional Regulatory protein
           [Escherichia coli CFT073]
 gi|13360877|dbj|BAB34840.1| transcriptional regulator for 2nd curli operon [Escherichia coli
           O157:H7 str. Sakai]
 gi|30040810|gb|AAP16541.1| probable csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 2457T]
 gi|56383350|gb|AAN42657.2| probable csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 301]
 gi|91071762|gb|ABE06643.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli UTI89]
 gi|110342808|gb|ABG69045.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli 536]
 gi|110614597|gb|ABF03264.1| Probable csgAB operon transcriptional Regulatory protein [Shigella
           flexneri 5 str. 8401]
 gi|115512353|gb|ABJ00428.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli APEC O1]
 gi|157077679|gb|ABV17387.1| transcriptional regulator CsgD [Escherichia coli E24377A]
 gi|171986605|gb|ACB59284.1| CsgD [Escherichia coli]
 gi|171986613|gb|ACB59291.1| CsgD [Escherichia coli]
 gi|171986621|gb|ACB59298.1| CsgD [Escherichia coli]
 gi|171986629|gb|ACB59305.1| CsgD [Escherichia coli]
 gi|187770420|gb|EDU34264.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018009|gb|EDU56131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999071|gb|EDU68057.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358200|gb|EDU76619.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363208|gb|EDU81627.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368715|gb|EDU87131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|189378335|gb|EDU96751.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC508]
 gi|190903055|gb|EDV62780.1| transcriptional regulator CsgD [Escherichia coli B7A]
 gi|192957201|gb|EDV87650.1| transcriptional regulator CsgD [Escherichia coli E110019]
 gi|194419278|gb|EDX35360.1| transcriptional regulator CsgD [Shigella dysenteriae 1012]
 gi|208729284|gb|EDZ78885.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731941|gb|EDZ80629.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737800|gb|EDZ85483.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157859|gb|ACI35292.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209773728|gb|ACI85176.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773730|gb|ACI85177.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773732|gb|ACI85178.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773734|gb|ACI85179.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773736|gb|ACI85180.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209911552|dbj|BAG76626.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|215264321|emb|CAS08678.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli O127:H6 str. E2348/69]
 gi|217318679|gb|EEC27105.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218351307|emb|CAU97012.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli 55989]
 gi|218360386|emb|CAQ97938.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli IAI1]
 gi|218364690|emb|CAR02380.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli S88]
 gi|218426557|emb|CAR07385.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli ED1a]
 gi|218431545|emb|CAR12423.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli UMN026]
 gi|222032794|emb|CAP75533.1| csgAB operon transcriptional regulatory [Escherichia coli LF82]
 gi|226898188|gb|EEH84447.1| transcriptional regulator for 2nd curli operon [Escherichia sp.
           3_2_53FAA]
 gi|227836810|gb|EEJ47276.1| LuxR family protein [Escherichia coli 83972]
 gi|254591823|gb|ACT71184.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. TW14359]
 gi|257753172|dbj|BAI24674.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|257763759|dbj|BAI35254.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|281178149|dbj|BAI54479.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|281600449|gb|ADA73433.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2002017]
 gi|284920864|emb|CBG33927.1| probable csgab operon transcriptional regulator [Escherichia coli
           042]
 gi|290761932|gb|ADD55893.1| CsgD [Escherichia coli O55:H7 str. CB9615]
 gi|291324152|gb|EFE63574.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088]
 gi|291428913|gb|EFF01938.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1412]
 gi|294494087|gb|ADE92843.1| transcriptional regulator CsgD [Escherichia coli IHE3034]
 gi|298279804|gb|EFI21312.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1302]
 gi|300297199|gb|EFJ53584.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|300307124|gb|EFJ61644.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|300356825|gb|EFJ72695.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300397133|gb|EFJ80671.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|300405459|gb|EFJ88997.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300410585|gb|EFJ94123.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300421107|gb|EFK04418.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300459572|gb|EFK23065.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300526482|gb|EFK47551.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300530512|gb|EFK51574.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300839744|gb|EFK67504.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|300844986|gb|EFK72746.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|305852749|gb|EFM53197.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101]
 gi|306909899|gb|EFN40393.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|307553043|gb|ADN45818.1| csgAB operon transcriptional regulatory protein [Escherichia coli
           ABU 83972]
 gi|307627490|gb|ADN71794.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UM146]
 gi|308121277|gb|EFO58539.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|312945603|gb|ADR26430.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313650706|gb|EFS15107.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 2457T]
 gi|315060319|gb|ADT74646.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli W]
 gi|315253837|gb|EFU33805.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|315287407|gb|EFU46818.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3]
 gi|315291086|gb|EFU50449.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1]
 gi|315296668|gb|EFU55963.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3]
 gi|320189720|gb|EFW64376.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. EC1212]
 gi|320200932|gb|EFW75516.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli EC4100B]
 gi|320637492|gb|EFX07292.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. G5101]
 gi|320643053|gb|EFX12254.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H- str. 493-89]
 gi|320648510|gb|EFX17165.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H- str. H 2687]
 gi|320653825|gb|EFX21899.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659305|gb|EFX26874.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664439|gb|EFX31590.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323175733|gb|EFZ61327.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1180]
 gi|323190548|gb|EFZ75820.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli RN587/1]
 gi|323379120|gb|ADX51388.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|323947348|gb|EGB43354.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           H120]
 gi|323953272|gb|EGB49138.1| luxR family protein regulatory protein [Escherichia coli H252]
 gi|323958052|gb|EGB53762.1| luxR family protein regulatory protein [Escherichia coli H263]
 gi|323966982|gb|EGB62408.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|323976586|gb|EGB71674.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|324007878|gb|EGB77097.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2]
 gi|324013311|gb|EGB82530.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1]
 gi|324017459|gb|EGB86678.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|324117387|gb|EGC11294.1| luxR family protein regulatory protein [Escherichia coli E1167]
 gi|326339260|gb|EGD63074.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. 1125]
 gi|326344780|gb|EGD68528.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. 1044]
 gi|327253435|gb|EGE65073.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli STEC_7v]
 gi|331050368|gb|EGI22426.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M718]
 gi|331055342|gb|EGI27351.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA206]
 gi|331060862|gb|EGI32826.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA143]
 gi|331065019|gb|EGI36914.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA271]
 gi|331070203|gb|EGI41569.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA280]
 gi|331075516|gb|EGI46814.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H591]
 gi|331080169|gb|EGI51348.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H299]
 gi|332088801|gb|EGI93913.1| putative csgAB operon transcriptional regulatory protein [Shigella
           boydii 5216-82]
 gi|332092876|gb|EGI97944.1| putative csgAB operon transcriptional regulatory protein [Shigella
           dysenteriae 155-74]
 gi|332102126|gb|EGJ05472.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9]
 gi|332758809|gb|EGJ89125.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 4343-70]
 gi|332759950|gb|EGJ90251.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2747-71]
 gi|332762241|gb|EGJ92509.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-671]
 gi|332767834|gb|EGJ98025.1| bacterial regulatory s, luxR family protein [Shigella flexneri
           2930-71]
 gi|333005819|gb|EGK25336.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri VA-6]
 gi|333019711|gb|EGK38984.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-304]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|331699219|ref|YP_004335458.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
            CB1190]
 gi|326953908|gb|AEA27605.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans
            CB1190]
          Length = 1033

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 126  FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183
              +    +  +    +       A           L L       A    LT RE S L 
Sbjct: 918  RGEAAAELRCALATAVELGARPLAEAVRDLAGRAGLALDDAVRPRAGGAVLTPRERSVLG 977

Query: 184  LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   G T+ ++  +L +S  TV+ +L     KL A +R +A++ A   G +
Sbjct: 978  LVAGGLTNRQVGAELFISEKTVSVHLSRVMAKLGAGSRTEAVSLAWSRGLL 1028


>gi|300694626|ref|YP_003750599.1| transcription regulator protein, luxr family [Ralstonia
           solanacearum PSI07]
 gi|299076663|emb|CBJ36001.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 252

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 13/207 (6%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           ++  +   + A    +                +Y  +                +  + + 
Sbjct: 30  VRPIVGHHHLA--CGHGRTTSSGVAMDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWLAT 87

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA- 142
             P+ +      +  E +  + +            A  V    +  G          +A 
Sbjct: 88  RRPVYF---DAASPWEGTDPVWLEKFVKHGLRNCAADAVFDEANCVGTYFSFHALPTIAE 144

Query: 143 -------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                   ++    HGA  + +       +K S A   LTERE     L G G ++ EIA
Sbjct: 145 GCLDATLRDLTPVLHGALLRAVASVENDLQKASQALATLTEREREVALLIGQGRSNAEIA 204

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + +  S  TV  YL S   K    NR+
Sbjct: 205 QLVCKSESTVKHYLSSIMDKTGCENRV 231


>gi|318058792|ref|ZP_07977515.1| two-component system DNA-binding response regulator [Streptomyces
           sp. SA3_actG]
 gi|318075476|ref|ZP_07982808.1| two-component system DNA-binding response regulator [Streptomyces
           sp. SA3_actF]
 gi|333026609|ref|ZP_08454673.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746461|gb|EGJ76902.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 218

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L+L   G++ +EIA++L +SV TV +++ +   KL   NR +    A   
Sbjct: 156 DKLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNRHELTRWAAAR 215

Query: 232 GYI 234
             +
Sbjct: 216 RLV 218


>gi|153010196|ref|YP_001371410.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562084|gb|ABS15581.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           +   + + A           +EL  +      +L+ RET  L+  GDG+ + EIA KLGL
Sbjct: 124 IRARLNLVARVKAISAHPAAMELEGEFI----HLSRRETEVLKEIGDGHKNGEIARKLGL 179

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S HTV+ Y+ +   KL   +R +A  +AIR G +
Sbjct: 180 SEHTVSDYVKAIYQKLSVSSRAEATREAIRRGLV 213


>gi|33863672|ref|NP_895232.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33635255|emb|CAE21580.1| possible DNA-binding response regulator [Prochlorococcus marinus
           str. MIT 9313]
          Length = 232

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNLTE 176
           +                 +LA    IE            V+        K S    NL+ 
Sbjct: 105 IEAHCDGLCAHELVGSGTLLAALSAIESDGTYLDSVVAGVLRHGRLGNGKSSRQIDNLSL 164

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+    G +++ IA++L LS+ TV +++ +   KL A +R  A+  A R G +
Sbjct: 165 REGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAVVVAFRDGLV 222


>gi|312197193|ref|YP_004017254.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228529|gb|ADP81384.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 278

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT+RE   L L  +G ++ E A++L +S  TV AYL S   KL   NR  A+  A 
Sbjct: 213 AGYALTQRELEVLGLVAEGLSNAEAAQRLVVSPETVKAYLRSIRSKLGVSNRTAAVTVAR 272

Query: 230 RFGYI 234
           R G +
Sbjct: 273 RSGLL 277


>gi|229018500|ref|ZP_04175361.1| Two-component protein Kinase [Bacillus cereus AH1273]
 gi|229024758|ref|ZP_04181196.1| Two-component protein Kinase [Bacillus cereus AH1272]
 gi|228736532|gb|EEL87089.1| Two-component protein Kinase [Bacillus cereus AH1272]
 gi|228742774|gb|EEL92913.1| Two-component protein Kinase [Bacillus cereus AH1273]
          Length = 592

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +AI KA+  G I
Sbjct: 565 YASTAYTKLGVRNKEEAILKALEIGII 591


>gi|167581294|ref|ZP_02374168.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           TXDOH]
          Length = 86

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++    G +++EIA +  ++  TV  ++ +   KL+  +R+Q    A+  
Sbjct: 17  DQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVER 76

Query: 232 GY 233
           G 
Sbjct: 77  GL 78


>gi|157962120|ref|YP_001502154.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157847120|gb|ABV87619.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 221

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT R+   LQL  +GY++ EIA ++ +S+ TV  +      +L+  +    +  AIR 
Sbjct: 152 ELLTSRQRQILQLIAEGYSTREIALRMNVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRS 211

Query: 232 GYIC 235
             IC
Sbjct: 212 KLIC 215


>gi|37524816|ref|NP_928160.1| two-component response regulator. hexose phosphate transport system
           regulatory protein UhpA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784241|emb|CAE13110.1| Two-component response regulator. Hexose phosphate transport system
           regulatory protein UhpA [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 210

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 11/160 (6%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFL 139
           PI    +      ES   L  RL      F  I   +             G   + ++  
Sbjct: 47  PIDVAVMDIAMPDESGLHLLTRLRQKRPDFRTIILSIYDTTAFVQSALDAGACGYLTKRC 106

Query: 140 MLAN--EVIIEAHGACYQVITDFL---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                 + +   H     +  D L       ++ +A + LT RE     L  +G   + I
Sbjct: 107 GPEELVQAVRSVHQGGCYLCADALKALRQTSQKVTALQVLTPREREIFDLLINGINVKTI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+L LS  TV+ +  +   KL   + I  +  A++   +
Sbjct: 167 AEQLYLSHKTVHVHRANILSKLQCDSTIDLVHYALQHQIL 206


>gi|330809571|ref|YP_004354033.1| LuxR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377679|gb|AEA69029.1| putative transcriptional regulator, LuxR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 219

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 8/207 (3%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79
           LH     +     A Y ++  L           LH    +             D     H
Sbjct: 14  LHAFTQLVPVSRAAFYCVDRQLQV-----HDFSLHKMSGEMHRDYLD-NYRQFDPLHPRH 67

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI-AFPVRLGFHKNGYVIFTSEF 138
             S  L ++   +                         +  F  R G  +    +  +  
Sbjct: 68  CMSSELAVVPLGLAMARQPRRDNHRYHDFLQRYGVVDVVEVFAHRDGQPQAAISLLRTAE 127

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +     +    A   ++   +           +LT +E     L   G +++++A +L
Sbjct: 128 QGVFTSQQLSQLSALQALLQLAVAHLPAHGDPLGDLTPKERQIAWLLRQGVSNKQLAREL 187

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAI 225
            + + T+  +L     K+   +R + +
Sbjct: 188 EVGLPTIKTHLIHLFRKVGVSSRTELV 214


>gi|291085787|ref|ZP_06354060.2| transcriptional regulatory protein UhpA [Citrobacter youngae ATCC
           29220]
 gi|291069848|gb|EFE07957.1| transcriptional regulatory protein UhpA [Citrobacter youngae ATCC
           29220]
          Length = 230

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 13/154 (8%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIE 148
                 E+   L  RL      F  I   +          +       L      E +++
Sbjct: 75  DIAMPDENGLSLLKRLRAQKPGFRAIILSIYDSPTFVQSALDAGASGYLTKRCGPEELVQ 134

Query: 149 A--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           A        H  C   +   L   ++ +     LT RE     L   G + +EIA KL L
Sbjct: 135 AVRSVGMGGHYLCADAL-RALRGGEQPAQVLEVLTPREREVFDLLVKGDSVKEIAFKLDL 193

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV+ +  +   KL   + I  +  A+    +
Sbjct: 194 SHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 227


>gi|282898145|ref|ZP_06306138.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Raphidiopsis brookii D9]
 gi|281196969|gb|EFA71872.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Raphidiopsis brookii D9]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 65/232 (28%), Gaps = 34/232 (14%)

Query: 11  SSSLQELSPRL------HLIQNRIK---ARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           + +L  +   +        +Q  +    + +F ++    +     +     E+       
Sbjct: 2   AKTLHSIFEAIAHVETEQELQQALMETISLHFGVHHWGISF-IEEQFLTGIEIPEIPAVC 60

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
            +   +         +         ++      +        +                P
Sbjct: 61  LEANPVGSY-----VVERHAPTHELLVLAPEDWKNFCTRHEHVM-------------TGP 102

Query: 122 VRLGFHKNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKK----RSSAARNLT 175
           +       G + F  +          + +    C  +      L  K    ++     LT
Sbjct: 103 IVCDGRLVGTLNFARDPGSPPFNNNDLADLSALCIHLSAKIATLRVKWNMVKTMTECPLT 162

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            RE    QL   G T+ EIA +L +S +TV   L     KL    R + +AK
Sbjct: 163 ARELEIAQLVAQGLTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVAK 214


>gi|320012105|gb|ADW06955.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTE 176
           +R G             ++ A  ++ E     +      L      S A        LT 
Sbjct: 96  LRAGADGFLLKRARPAEIVNAVRLVAEGETLLFPAAVRQLAAEYGTSKAHAAMDRAALTT 155

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE + L+L   G ++ EIA +L + V TV  ++ S   KL A +R QA+  A   G++
Sbjct: 156 REAAVLRLMARGLSNSEIAAELVVGVETVKTHVSSVLAKLGARDRTQAVIAAYESGFV 213


>gi|205353119|ref|YP_002226920.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272900|emb|CAR37830.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|254382064|ref|ZP_04997426.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340971|gb|EDX21937.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 222

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 47/133 (35%)

Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161
               V           +   VR     +   +  +   +LA  V                
Sbjct: 86  ADEYVYEALHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLIEEYTAATARPA 145

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +     LT RE   L   G G ++ EIA +L +S HTV +++G+   KL   +R
Sbjct: 146 GGPALSAERLEVLTARERETLLHLGRGRSNAEIAAELTVSEHTVKSHVGNVLAKLGLRDR 205

Query: 222 IQAIAKAIRFGYI 234
           IQA+  A   G I
Sbjct: 206 IQAVICAYETGLI 218


>gi|15077445|gb|AAK83172.1|AF333038_14 putative two-component regulator [Streptomyces viridochromogenes]
          Length = 206

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE     L   GY++ EIA  LG++  TV A++     KL   +R+QA   A   G 
Sbjct: 127 LSDRELQVFLLLSHGYSNREIAALLGVTERTVKAHMAQILAKLGVESRLQAGLVAFAHGL 186


>gi|21219585|ref|NP_625364.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|8744963|emb|CAB95289.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 221

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G   ++I +F    K+ ++      LTERE   + L G G ++EEIA +L +S  T   +
Sbjct: 130 GVTRRLIAEFAVRSKEPAAPGEMARLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    VKL A +R Q +  A   G +
Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|332533470|ref|ZP_08409333.1| nitrate/nitrite response regulator protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037017|gb|EGI73475.1| nitrate/nitrite response regulator protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 218

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 142 ANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
             +++  A     Q   D L  L +        LT+RE + + L   G  ++EIAE L +
Sbjct: 123 RRDIMCNALNRMLQFNKDALHKLTEGDIEPV-KLTKREKAIISLMSKGSKNKEIAEDLSI 181

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           S HTV  +L SA  K    NRI+ ++ A + 
Sbjct: 182 SPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|318059560|ref|ZP_07978283.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079903|ref|ZP_07987235.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 265

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G ++ +IA  L +S  TV  ++ +   K    +R QA+  A   G 
Sbjct: 197 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 256

Query: 234 I 234
           +
Sbjct: 257 V 257


>gi|317507118|ref|ZP_07964879.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254612|gb|EFV13921.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 214

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  + ++   + +   +++      + +   L           +LTE+E   L L G+G 
Sbjct: 113 GMELVSAVRAVGSGRSLLD--NRAAEALIRQLRAGTPDPGPLASLTEQERVLLDLIGEGL 170

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           T+ +IAE++ L+  TV  Y+     KL    R QA   A+R
Sbjct: 171 TNRQIAERMFLAEKTVRNYVSKLLAKLGVERRTQAAVLAVR 211


>gi|311893888|dbj|BAJ26296.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 117

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L G G ++ E+A +L LS  TV  ++     KL   +R QA+  A   G
Sbjct: 49  ALTPRELEVLALLGRGLSTTELAGELTLSEATVKTHVARIFAKLGLRDRAQAVVVAYETG 108

Query: 233 YI 234
            +
Sbjct: 109 LV 110


>gi|298251645|ref|ZP_06975448.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546237|gb|EFH80105.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1081

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 3/154 (1%)

Query: 84   LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
            LL ++ + + E  + +      +         + +   + L       +  +S  + ++ 
Sbjct: 928  LLAVVHEMLGEHALAQDFFSAVLEYVRLEGYRSSVVRELPLLEPLLRTIAESSPAMSMSL 987

Query: 144  EVIIEAHGACY--QVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGL 200
            + I+ A        +  D L L ++R+ A    L+ RE   L L   G +++EIA +L +
Sbjct: 988  QSILTAGSLNAPSTIQPDHLALLRERTRAGEQILSPREREVLLLLSTGASNQEIANQLII 1047

Query: 201  SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ TV  ++ +    L   NR QA+A+A     +
Sbjct: 1048 TLGTVKRHVNTILATLQVSNRTQAVARARELSLL 1081


>gi|261345944|ref|ZP_05973588.1| nitrate/nitrite response regulator protein NarL [Providencia
           rustigianii DSM 4541]
 gi|282566031|gb|EFB71566.1| nitrate/nitrite response regulator protein NarL [Providencia
           rustigianii DSM 4541]
          Length = 206

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           IE H    + +   L    +       LT RE   L     G  + EI++ L +S  TV 
Sbjct: 121 IEGHHVFSEKVYQHLITRHQSKDPLSTLTRRECEILHEMAAGLKNREISQLLFISEETVK 180

Query: 207 AYLGSATVKLDAVNRIQA 224
            ++ +   KL   +R++A
Sbjct: 181 VHIRNVLKKLRVRSRLEA 198


>gi|212638135|ref|YP_002314655.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559615|gb|ACJ32670.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 213

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            +  + LE           LT RE   ++L   GYT+ +IA KL +S  TV  +  +   
Sbjct: 131 HIPEERLEKMFAEKEPRSPLTNREREIVRLTFLGYTNNQIANKLKISPKTVENHKTNIMQ 190

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL    + + I  A++   
Sbjct: 191 KLGIKEKHELIQYALKNHI 209


>gi|254438204|ref|ZP_05051698.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198253650|gb|EDY77964.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 204

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  A  LTERE   L+   +G +++EIA  L +   TV  ++ +   K+   NR QA   
Sbjct: 138 NPLADKLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALI 197

Query: 228 AIRFGY 233
                 
Sbjct: 198 GREANL 203


>gi|153215381|ref|ZP_01949979.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153829298|ref|ZP_01981965.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|229512672|ref|ZP_04402141.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21]
 gi|124114752|gb|EAY33572.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|148875198|gb|EDL73333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|229350349|gb|EEO15300.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21]
          Length = 214

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
           RL    L   G    +       G++       ++  +  +  H +   +          
Sbjct: 89  RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           ++ A  +LT RE   L+    G ++ +IAE L +S  TV ++L     KL+  NR++AIA
Sbjct: 148 QAQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207

Query: 227 K 227
            
Sbjct: 208 W 208


>gi|330470082|ref|YP_004407825.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813053|gb|AEB47225.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 225

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 164 FKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              R   A      LTERE   L    +G ++ EI  +L +S  TV  +      KL A 
Sbjct: 150 SAARPPRADRSTIGLTERELQVLLGMAEGRSNAEIGRELFVSEDTVKTHARRLFRKLGAR 209

Query: 220 NRIQAIAKAIRFGYI 234
           +R  A+A   R G +
Sbjct: 210 DRAHAVAAGFRAGLV 224


>gi|283781707|ref|YP_003372462.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440160|gb|ADB18602.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 211

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
               + ++  +    LT+RE   L+    G T+++IAE LG+S  TV  ++     K+  
Sbjct: 139 AAARIDQQIEAP---LTQREGEVLKHVCSGRTNQQIAELLGISYETVKEHVQHLLEKIGV 195

Query: 219 VNRIQAIAKAIRFGY 233
            +R QA   A+R G 
Sbjct: 196 ADRTQAAIWAVRAGL 210


>gi|94314237|ref|YP_587446.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93358089|gb|ABF12177.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 247

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 120 FPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
            P+ +   K G V F    F        ++      +   +     ++       LT RE
Sbjct: 127 VPMTVAAMKAGAVNFIAKPFRDQDLLDAVDEALQRDRAQREAEAQSRQLRDHFDTLTGRE 186

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              +QLA  G  +++IA+ LG+S  TV  Y G A  K+ A    + +  A   G +
Sbjct: 187 QEVMQLAARGLMNKQIADDLGISEATVKIYRGHAMRKMQARTFAELVIMAQSLGLV 242


>gi|326779789|ref|ZP_08239054.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660122|gb|EGE44968.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 244

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L     G++++ IAE+L +S  TV  ++  A  KL A +R Q +  
Sbjct: 173 AERLAALTGREREVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVI 232

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 233 AYESGLV 239


>gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 221

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G ++ +I ++L LS  T+  Y+ S   K +  NR + +  A+   
Sbjct: 152 GLTQREQEVLTLLTKGLSNAQIGDRLHLSARTIEKYVSSLLQKTEVHNRAELVRFALEHH 211

Query: 233 YI 234
            +
Sbjct: 212 LL 213


>gi|16080459|ref|NP_391286.1| two-component response regulator YvfT [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311357|ref|ZP_03593204.1| hypothetical protein Bsubs1_18471 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315684|ref|ZP_03597489.1| hypothetical protein BsubsN3_18387 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320599|ref|ZP_03601893.1| hypothetical protein BsubsJ_18350 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324884|ref|ZP_03606178.1| hypothetical protein BsubsS_18506 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312958|ref|YP_004205245.1| two-component response regulator YvfT [Bacillus subtilis BSn5]
 gi|81814911|sp|O07019|YVFU_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yvfU
 gi|1945721|emb|CAB07991.1| hypothetical protein [Bacillus subtilis]
 gi|2635919|emb|CAB15411.1| two-component response regulator [YvfT] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320019232|gb|ADV94218.1| two-component response regulator (YvfT) [Bacillus subtilis BSn5]
          Length = 200

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+LA  G T+++I  +L LS  TV  Y+     KL+A NR +A + A   G
Sbjct: 139 PLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLNAKNRTEAASIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|94311470|ref|YP_584680.1| ATP-dependent transcription regulator LuxR [Cupriavidus
           metallidurans CH34]
 gi|93355322|gb|ABF09411.1| putative ATP-dependent transcriptional regulator, LuxR-family
           [Cupriavidus metallidurans CH34]
          Length = 925

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 9/224 (4%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +    +    R   +     A   +++ I+          L    H+YD     +  +L 
Sbjct: 688 EIDLAEATVARAQKLSTEAGAGRASVWEIDVVAQLSASG-LALHRHDYDGAMARLRPLLD 746

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF-HK 128
                    HF + L  +     ++      + +  +          G+   +       
Sbjct: 747 SVELAARGRHFATVL--VQCAVAEDGRGNARAAREHLCGALRHGQRFGLVRSLLDAATGG 804

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----FKKRSSAARNLTERETSCLQ 183
            G +    +   L   V   A                     +RS+  R L+ERE   L+
Sbjct: 805 QGLMRRLLDEQGLDPVVAFYARRLLEASSRWRGRAVAPASAVRRSTPIRTLSEREAEVLK 864

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L     +++ +A  L +S  TV  +L +  +KL    R +A+A 
Sbjct: 865 LIAQAMSNKMVARTLSISPETVKWHLKNIYIKLGVSGRDEAVAL 908


>gi|288801178|ref|ZP_06406633.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288331789|gb|EFC70272.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 318

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + + AA NL+ERE   +     G +++EIAE L +S++TV  +  +   KL   +     
Sbjct: 243 RGTEAADNLSERERDVIVSLVQGMSNKEIAEHLCISINTVITHRRNIARKLQIHSPAGLT 302

Query: 226 AKAI 229
             AI
Sbjct: 303 IYAI 306


>gi|239927189|ref|ZP_04684142.1| LuxR family two-component response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291435532|ref|ZP_06574922.1| luxR family two-component response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291338427|gb|EFE65383.1| luxR family two-component response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 230

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFL--ELFKKRSSAARN 173
            +  G             L+ A   +             +++      +  ++   A   
Sbjct: 104 SIMAGASGYVLKQIRGSDLVAAVRTVARGQSLLDPSATTKLMARLRGGQQKEEEPDALPG 163

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT+RE   L L G+G T+ +I ++L L+  TV  ++     KL    RIQA   A   
Sbjct: 164 LTDREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATEA 221


>gi|238786248|ref|ZP_04630193.1| Two-component response regulator [Yersinia bercovieri ATCC 43970]
 gi|238712839|gb|EEQ04906.1| Two-component response regulator [Yersinia bercovieri ATCC 43970]
          Length = 210

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                + AR L+ERE + L+   +G ++++IA+++ +S  TV+ Y      KL   + I+
Sbjct: 140 SHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIE 199

Query: 224 AIAKAIRFGYI 234
               A     +
Sbjct: 200 LADYAHTHNLV 210


>gi|256832826|ref|YP_003161553.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256686357|gb|ACV09250.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 226

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 148 EAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
                  +V+ + L   + R +         +LT+RE     L  +G+++ EIA +L L 
Sbjct: 131 ALSRRAARVVVERLRAAETRPAQQFAQSLLASLTDREREITALVAEGFSTAEIATRLYLG 190

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             TV  +L SA  K    NR +    A + G 
Sbjct: 191 EATVKTHLKSAMNKTGTDNRTRLAVLAAKAGL 222


>gi|254467544|ref|ZP_05080954.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
 gi|206684545|gb|EDZ45028.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
          Length = 265

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 50/189 (26%), Gaps = 20/189 (10%)

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
            +          D       +G  P  ++ +          +        +     I   
Sbjct: 74  VEFYASGPYLL-DPLYQACRNGCAPGAYRLMDLAPEAFYRSEYYRAFYRKINISDEIGVL 132

Query: 122 VRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--- 173
           V+ G  +   V          F     + +          +       +      +    
Sbjct: 133 VQDGPERWFIVSLARFARQQRFEAADTDRLNAVFKVISAAVRRQWGQAEAAVQGGQPDGW 192

Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                      L+ RE   +QL   G+++   A  LG++  TV  +   A  KL   ++ 
Sbjct: 193 EDRMQTFGAGVLSPREQEIVQLILQGHSTPSAAAYLGIAEGTVKVHRHHAYSKLGISSQA 252

Query: 223 QAIAKAIRF 231
           +  + A R 
Sbjct: 253 ELFSMATRH 261


>gi|167840151|ref|ZP_02466835.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 214

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTE 176
           +RLG      + + S   ++     + A         D   +      +   S    LT 
Sbjct: 91  IRLGASGY-LLKWCSPDGIVQAVRRVMAGRVHIDPSLDGARIASAAGGRTPPSPVDELTR 149

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   L+L  DG  + EIA  L +S  TV+ +      KL A N    I  A R+GY
Sbjct: 150 REKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206


>gi|70730322|ref|YP_260061.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344621|gb|AAY92227.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 208

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G T+ EIAEKL LS  TV+ +  +   KL   + +  +  A +  
Sbjct: 147 ALTNRELEVLKLLAEGLTNLEIAEKLHLSNKTVSGHKINILSKLGVTSVVDLVNIARQNE 206

Query: 233 YI 234
            +
Sbjct: 207 LV 208


>gi|332701939|ref|ZP_08422027.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552088|gb|EGJ49132.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 215

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGY 189
           ++      +L  E+         ++  + L     ++++A    L+ RE   L L   G 
Sbjct: 111 LLMRGITAVLEGELWYSRRAISERLRQNQLTQASPKAASAGKEMLSAREREVLLLIAQGL 170

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +++E+ +KL +S+ TV  +L +   KL   NRIQA   A++ 
Sbjct: 171 SNDEVGDKLCISLSTVKKHLCNIYAKLKISNRIQAAFWAVQN 212


>gi|302036456|ref|YP_003796778.1| hypothetical protein NIDE1093 [Candidatus Nitrospira defluvii]
 gi|300604520|emb|CBK40852.1| protein of unknown function, putative Response regulator, LuxR
           family [Candidatus Nitrospira defluvii]
          Length = 117

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 39/77 (50%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              ++    R+  +  LT R+   L+L   G T+ +IA +L +SV TV  +  +   +L 
Sbjct: 34  ARVVKPAPVRTKRSEGLTPRQKEILKLVSQGNTNRDIARRLDISVRTVEVHRFNLMRRLK 93

Query: 218 AVNRIQAIAKAIRFGYI 234
             N  Q + +A++ G++
Sbjct: 94  VRNVAQLLRQALQQGFL 110


>gi|312197189|ref|YP_004017250.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228525|gb|ADP81380.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 285

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            A  LT RE   ++   +G+++ E A+ L +   TV +YL S   KL   NR  A+  A 
Sbjct: 220 TAFGLTPRELEVVRFIAEGHSNAEAAKHLTVKPETVKSYLRSIMQKLGVHNRTAAVNVAR 279

Query: 230 RFGYI 234
           R G +
Sbjct: 280 RAGLL 284


>gi|240170339|ref|ZP_04748998.1| transcriptional regulator, LuxR family protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 528

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 1/101 (0%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           ++   +       E      + +         + S     LT RE   L L   G +++E
Sbjct: 425 SATRRLRRQVQAGELDAVAAEAVLHAAGHRADRSSLRPHGLTPREVEVLCLVARGASNKE 484

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA  L +S  T   ++     K+   NRI A   A+R G +
Sbjct: 485 IAAALVISEKTARNHVERTYAKIGVTNRIGASMYALRNGLV 525


>gi|148272041|ref|YP_001221602.1| putative transcriptional regulator [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829971|emb|CAN00898.1| putative transcriptional regulator [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 539

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
           +    +           G+   +R           T     LA + + +       V   
Sbjct: 405 ARSDHAFDRAALHAVSTGV---LRPFAVFPAAASHTLLDRALARDQLPDVRAVLEGVRAG 461

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            + +    ++    LT+RE   +    DG T  +IA +L +S +TV +++ SA  KLDA 
Sbjct: 462 QVPVE---AAPVDPLTDRERLIVACLADGLTVTQIAARLFISPNTVKSHVRSAYRKLDAT 518

Query: 220 NRIQAIAKAIRFG 232
           +R +A+ +A   G
Sbjct: 519 SRSEAVERARALG 531


>gi|118471878|ref|YP_884521.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173165|gb|ABK74061.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 216

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E+ ++       L+ RE   L L   G +   +A++L L+  TV  ++     KL   +R
Sbjct: 143 EIRRRNEPDVPVLSPREREVLNLIAQGRSIPAMAKELYLAPSTVKTHVQRLYEKLGVSDR 202

Query: 222 IQAIAKAIRFGYI 234
             A+A+A+R   +
Sbjct: 203 AAAVAEAMRRHLL 215


>gi|160872211|ref|ZP_02062343.1| response regulator UvrY [Rickettsiella grylli]
 gi|159121010|gb|EDP46348.1| response regulator UvrY [Rickettsiella grylli]
          Length = 225

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               ++     S    L+ERE   + +   G     IA+KL LS  TVN Y      KL 
Sbjct: 133 MALRQVSDASKSPFAQLSERELQVMYMVTHGTKVNGIAKKLCLSPKTVNTYRYRLYEKLG 192

Query: 218 AVNRIQAIAKAIRFGYI 234
             N ++    A+R+G +
Sbjct: 193 VHNDVELTHLALRYGLL 209


>gi|229520043|ref|ZP_04409472.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80]
 gi|229525089|ref|ZP_04414494.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis
           VL426]
 gi|229338670|gb|EEO03687.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis
           VL426]
 gi|229342992|gb|EEO07981.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80]
 gi|327483254|gb|AEA77661.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 214

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
           RL    L   G    +       G++       ++  +  +  H +   +          
Sbjct: 89  RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +  A  +LT RE   L+    G ++ +IAE L +S  TV ++L     KL+  NR++AIA
Sbjct: 148 QVQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207

Query: 227 K 227
            
Sbjct: 208 W 208


>gi|318061834|ref|ZP_07980555.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 221

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA---- 171
           +    LG    GY+   +    +   +   A G      +V    L   + R +A+    
Sbjct: 98  SILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVLDREVQDRLLATVRARPTASGQGL 157

Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L G G  +  IAEKL +S  TV  ++ +   K    +R +A+ +A+ 
Sbjct: 158 PADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALT 217

Query: 231 FGY 233
            G 
Sbjct: 218 AGL 220


>gi|167842293|ref|ZP_02468977.1| probable two-component response regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 217

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              NGYV+  S   +L   +  +   H A    +          + A   LT RE   L+
Sbjct: 107 AGANGYVLKNSSQQVLLETLWKVWRGHTALDPALNAAQLGTPSAAPAEVALTPRERQVLK 166

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L  +G  + ++AE+L +++ TV  +  +   KLDA N       A R G 
Sbjct: 167 LIAEGCRNRDVAERLTITIKTVETHRLNLMRKLDAHNAADLTNWAHRLGL 216


>gi|152996834|ref|YP_001341669.1| response regulator receiver protein [Marinomonas sp. MWYL1]
 gi|150837758|gb|ABR71734.1| response regulator receiver protein [Marinomonas sp. MWYL1]
          Length = 211

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            ++ +  I        Q+I          +    +L+ERE         G ++++IA ++
Sbjct: 115 SVVDSGEIWGGKAFIQQLIMQSATSEPLHNDELDDLSERELKVSSFVSKGLSNKQIALEM 174

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           G++  TV A+L S   K +  +R+     A
Sbjct: 175 GITERTVKAHLTSIFKKTNTKDRLALALLA 204


>gi|307327922|ref|ZP_07607104.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886440|gb|EFN17444.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L     +A  +LT RE   L   G G ++ +IA +L ++  TV  ++     KL+  +R
Sbjct: 154 SLNTPSPAALASLTPREREVLACLGQGLSNAQIAARLSMAEATVKTHVSRLLSKLELRSR 213

Query: 222 IQAIAKAIRFG 232
           +QA   A   G
Sbjct: 214 VQAAVLAQELG 224


>gi|299147639|ref|ZP_07040703.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
 gi|298514426|gb|EFI38311.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
          Length = 257

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L+L   G  S+EIA+KL +S+HTVN +  +   KL   N I+AI      G +
Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256


>gi|288927582|ref|ZP_06421429.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330416|gb|EFC69000.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 198

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 157 ITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +  +     +      +      L++RE   L L   G  ++EIA++L + + TV  +  
Sbjct: 110 LEQYAHAHGRNLPPLPHALQMKILSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRK 169

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +       A+  GY+
Sbjct: 170 NIMDKLGMKSVSALTIYAVMHGYV 193


>gi|260911715|ref|ZP_05918291.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634140|gb|EEX52254.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 206

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 157 ITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +  +     +      +      L++RE   L L   G  ++EIA++L + + TV  +  
Sbjct: 118 LEQYAHAHGRNLPPLPHALQMKVLSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRK 177

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +       A+  GY+
Sbjct: 178 NIMDKLGMKSVSALTIYAVMHGYV 201


>gi|297563838|ref|YP_003682811.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848287|gb|ADH70305.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 206

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L   V     G      T    L  + R  A ++L++RE   L L
Sbjct: 96  AGATGYLLKDASPDELLRGVRAVHRGESVLAPTAVRHLMGQVRRPAGQSLSDRELQVLGL 155

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG ++   A +L +S  ++  +L     KL   +R  A+A+A R G +
Sbjct: 156 VADGASNRAAAARLFISEASIKTHLQHVYNKLGVRDRAAAVAEAYRRGLL 205


>gi|239816565|ref|YP_002945475.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803142|gb|ACS20209.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 235

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L   G ++ ++AE L +S  TV  +  +   KL   +R +A+ +A R G
Sbjct: 173 ALTPRERRILELVAQGLSNRDMAESLSISRLTVECHTKNIYRKLAVSSRTEAVYQARRHG 232

Query: 233 YI 234
            +
Sbjct: 233 LL 234


>gi|212691634|ref|ZP_03299762.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855]
 gi|212665823|gb|EEB26395.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855]
          Length = 256

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +LT RE   L+L   G+ S+EIA+KL +S++TV+ +  +   KL   N ++AI    
Sbjct: 191 PVVSLTGREMEILRLIQRGFLSKEIADKLCISIYTVHIHRQNLLRKLGVHNSLEAIRLGQ 250

Query: 230 RFGYI 234
             G +
Sbjct: 251 ESGLL 255


>gi|327405906|ref|YP_004346744.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327321414|gb|AEA45906.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 226

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERET  + +  +G T+  IA+ L LS HT+N +  +   KL   N    +  A++   
Sbjct: 153 LSERETEIITMISEGLTNIMIADSLCLSNHTINTHRKNIMAKLGVKNTAGIVIYAVKTNL 212

Query: 234 I 234
           +
Sbjct: 213 V 213


>gi|325961668|ref|YP_004239574.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467755|gb|ADX71440.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 416

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +A  NL ERE   LQL   G  +  IA KL +S +TV  +L +   K+ A +R +A+A A
Sbjct: 351 AADWNLGERELEVLQLLAAGQRNRSIAAKLHISENTVKFHLRNLYRKIGASSRTEAMALA 410

Query: 229 IRFGY 233
              G 
Sbjct: 411 HSNGL 415


>gi|297158223|gb|ADI07935.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 212

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    LA+ +   A G          +L  + R      LT RET  L  
Sbjct: 100 AGAIGYLLKDTTREQLADAIRSAARGETVLAPRVAEKLIARMRRPVQDPLTARETDVLNA 159

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG T+ EI ++L ++  TV  +L     KLD  +R +A+  A+  G +
Sbjct: 160 VADGLTNAEIGKRLVITEATVKTHLLRLFAKLDVNDRTRAVVVALERGLL 209


>gi|297195878|ref|ZP_06913276.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152976|gb|EFH32075.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 221

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 160 FLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             E   +    A       LTERE   + L G G ++EEIA +L +S  T   ++    V
Sbjct: 136 IAEFAARSKGPAEAQGLGELTEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMV 195

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A +R Q +  A   G +
Sbjct: 196 KLGARDRAQLVVLAYESGLV 215


>gi|302531524|ref|ZP_07283866.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440419|gb|EFL12235.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 208

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 163 LFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           L K R         LT+RE   L+L G G ++ EIAE+L L+  TV  Y+ S   KL   
Sbjct: 135 LDKLRHPPTDELAALTDRERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQ 194

Query: 220 NRIQAIAKAIRFG 232
            R QA A   R G
Sbjct: 195 RRTQAAAWIARRG 207


>gi|196229624|ref|ZP_03128488.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225950|gb|EDY20456.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L  RE   L L   GY  +EI E LG+S HTVN+++     KL   +R QA+AK    G
Sbjct: 153 GLAGREVEVLGLLAQGYLYKEIGESLGISTHTVNSHIRRIYEKLHVRSRSQAVAKY--RG 210

Query: 233 YI 234
            I
Sbjct: 211 LI 212


>gi|220910558|ref|YP_002485869.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219867169|gb|ACL47508.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT  E   +QL   G  +++IAE+L +S  TV +++ +   K    NR +    A
Sbjct: 152 PLDVTLTATELKVVQLVAKGMANQKIAEELHVSQRTVESHVSNMLGKTGLKNRTELARWA 211

Query: 229 IRFGY 233
           I    
Sbjct: 212 IERRL 216


>gi|118592487|ref|ZP_01549878.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118434834|gb|EAV41484.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 207

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDG 188
           ++    ++      ++EA G   ++      +  + SS A    +LT RE   L L   G
Sbjct: 98  MLQGGSYMPPDLVELLEA-GPSMRLEKARNLVDARNSSGADLISSLTPRELEVLALIAQG 156

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + ++ IA  L LS HT+  ++     K+   NR +A A
Sbjct: 157 HQNKNIAANLSLSEHTIKLHIHHIISKMGVSNRTEAAA 194


>gi|91213197|ref|YP_543183.1| DNA-binding transcriptional activator UhpA [Escherichia coli UTI89]
 gi|117625950|ref|YP_859273.1| DNA-binding transcriptional activator UhpA [Escherichia coli APEC
           O1]
 gi|218560750|ref|YP_002393663.1| DNA-binding transcriptional activator UhpA [Escherichia coli S88]
 gi|237703473|ref|ZP_04533954.1| response regulator for uhpBA two component regulatory system
           [Escherichia sp. 3_2_53FAA]
 gi|91074771|gb|ABE09652.1| response regulator for uhpBA two component regulatory system
           [Escherichia coli UTI89]
 gi|115515074|gb|ABJ03149.1| response regulator for uhpBA two component regulatory system
           [Escherichia coli APEC O1]
 gi|218367519|emb|CAR05301.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli S88]
 gi|226902737|gb|EEH88996.1| response regulator for uhpBA two component regulatory system
           [Escherichia sp. 3_2_53FAA]
 gi|294489575|gb|ADE88331.1| transcriptional regulatory protein UhpA [Escherichia coli IHE3034]
 gi|307628751|gb|ADN73055.1| DNA-binding transcriptional activator UhpA [Escherichia coli UM146]
 gi|315285483|gb|EFU44928.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|323949916|gb|EGB45800.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323955033|gb|EGB50811.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
          Length = 196

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|84685388|ref|ZP_01013286.1| Possible LuxR family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666545|gb|EAQ13017.1| Possible LuxR family protein [Rhodobacterales bacterium HTCC2654]
          Length = 197

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 14/183 (7%)

Query: 52  CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111
             +  YD    +I         D  +F        I W  I     +       +     
Sbjct: 29  LMIQTYDPRWTEIYTEKGYMLADPMVFWGFGNDGAIRWSDIDLPDPLN-----IMGQARR 83

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
                G+A              F  +     +  I         +          R++  
Sbjct: 84  FGLTFGVAVS-TGLTSSRTIGGFARDDREFTDTEIARIRSVVETLHE--------RATPP 134

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  +   L+L   G    E +  LG+S     A L +A   L      +A+ +A  +
Sbjct: 135 DRLTPAQRMALRLVAKGNRHAEASAVLGISESAFKARLRAAREALFVRTTAEAVQRAHEY 194

Query: 232 GYI 234
             +
Sbjct: 195 NLL 197


>gi|302539653|ref|ZP_07291995.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457271|gb|EFL20364.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                +               R +T+RE   L+L  +G+TS++IA+ L +SV TV  +  
Sbjct: 134 AVNALIRNHLDRARHGEPLPERAITDREEEILKLVAEGHTSQQIADMLVISVKTVERHRA 193

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   +R++    AIR G I
Sbjct: 194 NLLQKLGLKDRLELTRYAIRAGLI 217


>gi|229821513|ref|YP_002883039.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567426|gb|ACQ81277.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 232

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 5/124 (4%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +  V       + +  +      A   +  D     +     
Sbjct: 114 RAGARGYVTKSITGTDLSDAVVRVAGGDAVFSPRLAGFVLDAFGAIGGDVATGDE----- 168

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   ++L   GYT  E+A +L +S+ TV  ++ +   KL   +R +    A +
Sbjct: 169 LDKLTAREREVMRLIARGYTYREVASELFISIKTVETHVSAVLRKLQLSSRHELTRWAAQ 228

Query: 231 FGYI 234
              +
Sbjct: 229 RRLL 232


>gi|94501729|ref|ZP_01308243.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Oceanobacter sp. RED65]
 gi|94426129|gb|EAT11123.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Oceanobacter sp. RED65]
          Length = 198

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT R+   LQL   G  ++ I  +L +S  TV  +L +    L+   R Q +  A 
Sbjct: 134 PNIELTPRQREVLQLLAQGLPNKAICRELNMSEATVKTHLRTIFALLNVNTRTQCVNVAQ 193

Query: 230 RFGYI 234
           ++  I
Sbjct: 194 QYSLI 198


>gi|108797407|ref|YP_637604.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866491|ref|YP_936443.1| LuxR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767826|gb|ABG06548.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS]
 gi|119692580|gb|ABL89653.1| transcriptional regulator, LuxR family [Mycobacterium sp. KMS]
          Length = 544

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERE 178
             +R+           +  + L     +         +    E+     + A + LT RE
Sbjct: 429 VRLRMAQACRRMNDDDTAAMELDAARRVFEQLGAAPALAQVAEVSTNAPAGAPSGLTTRE 488

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+L   G T+ EIA  L +S  TV  +LG+   KLD  +R  A A A +   +
Sbjct: 489 LEVLRLLATGATNREIAHTLVISEKTVARHLGNIFNKLDVSSRTAATAYAYQHDLV 544


>gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 249

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 148 EAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           E      QV      L +K            + T RE S L L   G  ++EIA +L  S
Sbjct: 156 ELEKIAKQVAEIRAMLDQKNGIVQTPPPLRIDFTAREQSVLDLVAQGLMNKEIARRLETS 215

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V  V  Y+     K    +R + +  A+  G 
Sbjct: 216 VRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 247


>gi|307328434|ref|ZP_07607610.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886007|gb|EFN17017.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 234

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 31/67 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              + R      L+ RE   L L GDG T+ +I ++L LS  TV  ++     KL    R
Sbjct: 155 APQEPRDEVLAGLSPREREILVLIGDGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERR 214

Query: 222 IQAIAKA 228
           IQA   A
Sbjct: 215 IQAAVLA 221


>gi|293414338|ref|ZP_06656987.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185]
 gi|291434396|gb|EFF07369.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185]
          Length = 216

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|302554590|ref|ZP_07306932.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472208|gb|EFL35301.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 217

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L        R +TERE   L+L  +G+TS+EI E L +S  TV  +  +   KL   +R
Sbjct: 143 RLHAGGGLPERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGMRDR 202

Query: 222 IQAIAKAIRFGYI 234
           ++    AIR G I
Sbjct: 203 LELTRYAIRAGLI 215


>gi|262202074|ref|YP_003273282.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085421|gb|ACY21389.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 218

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                +   L   K R      LT +E     L G+G T+ +IAE++ L+  T+  Y+  
Sbjct: 133 RSTAALLAKLRDGKDRPDPLAELTSQEREVFNLIGEGMTNRQIAERMFLAEKTIKNYVSR 192

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KLD   R Q    A + 
Sbjct: 193 ILAKLDMQRRTQVAVMATKL 212


>gi|218258047|ref|ZP_03474480.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225811|gb|EEC98461.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii
           DSM 18315]
          Length = 202

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           +   E      ++ T+ +   +  S   + L+ RE   +     G T+ EIA++L LS H
Sbjct: 105 DSADELKHKLERLNTEEVPPEEGESDDQQTLSSREKEIVVCVVKGMTNREIADRLYLSTH 164

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +  +   KL   +       AI    I
Sbjct: 165 TVITHRRNIARKLQVHSASGLTVYAIVNKLI 195


>gi|187920845|ref|YP_001889877.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719283|gb|ACD20506.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 267

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 68/247 (27%), Gaps = 34/247 (13%)

Query: 5   TLTGKKSSSLQELS---PRLHLIQNRIKARNFA--LYTINSALDFPRRQQLICELHNYDL 59
              G+    L +       + L++  +   N+   ++  N         Q      +   
Sbjct: 12  QRLGRLVEKLDDKQFWHALIDLLRKVVHFDNWVAMIFWPNGKPQLIAETQTRTPHDDLFK 71

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
                         D F       + P ++   +         +   R     +    + 
Sbjct: 72  GYL-----NSVYLLDPFYQFSLGAISPGVYCLDEVAPDHFRETEYFRRYFSVNVLEDEVQ 126

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAA- 171
               L       V   SE    + +V              C+ +      L    SSAA 
Sbjct: 127 LLAPLPLGGTLSVSLGSERRFSSADVGTLCLYGAWLLPLMCHALSAQTAILPPPASSAAG 186

Query: 172 ----------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                            +LT RE     +   G++++ +A +LG+S  T   +  +   K
Sbjct: 187 GDRRLHFEQALRKRSNASLTHREIEVALMILAGHSTKNMARELGVSPATAKVHRRNLYRK 246

Query: 216 LDAVNRI 222
           L+  ++ 
Sbjct: 247 LNISSQA 253


>gi|46198976|ref|YP_004643.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46196600|gb|AAS81016.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 192

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 153 CYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
             ++    L + +      +     LT RE   L+L  +G +++EIA  L LS  TV ++
Sbjct: 106 APELKRRLLRIRQGEERLTAPDIPALTPREEEVLRLLAEGLSTKEIARALRLSPETVRSH 165

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L S   KL+A NR++A+++A   G++
Sbjct: 166 LESLYAKLEARNRVEALSRARSLGFL 191


>gi|325922114|ref|ZP_08183907.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC
           19865]
 gi|325547411|gb|EGD18472.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC
           19865]
          Length = 923

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 827 RALTIQALLERLSGDEDPAGDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 887 LYRKLDARSRESALAQALQRGLL 909


>gi|312143766|ref|YP_003995212.1| transcriptional regulator, LuxR family [Halanaerobium sp.
           'sapolanicus']
 gi|311904417|gb|ADQ14858.1| transcriptional regulator, LuxR family [Halanaerobium sp.
           'sapolanicus']
          Length = 255

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           NLT+RE   L+L   G +++EIA +L +S++TV  ++     K    +RI+ I
Sbjct: 197 NLTDREKQVLKLIIQGMSNQEIAAELFISINTVKKHISHLFNKCKVSSRIELI 249


>gi|270263820|ref|ZP_06192088.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042013|gb|EFA15109.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 215

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 7/133 (5%)

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE--FLMLANEVIIEAHGAC 153
             I ++                    +R        V    +  F  +    +       
Sbjct: 81  AAIANNRHYYHDFMLPNDMRDMTEIFIRQRKRIIAGVSLIRDTPFTEVERGRLRAVLPLI 140

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                D L   +     A+ LT +E   + +  +G +++ IA KLG+S+ TV  ++ +  
Sbjct: 141 ELATRDLLPGCE-----AQLLTAKEQEIVNMVREGASNKRIALKLGISLSTVKTHMRNIF 195

Query: 214 VKLDAVNRIQAIA 226
            K +  NR + +A
Sbjct: 196 AKTEVANRTELVA 208


>gi|262172512|ref|ZP_06040190.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451]
 gi|261893588|gb|EEY39574.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 38/78 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H +   +          ++ A  +LT RE   L+    G ++ +IAE L +S  TV ++L
Sbjct: 131 HVSSQLLHYYRYAFQTHQTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHL 190

Query: 210 GSATVKLDAVNRIQAIAK 227
                KL+  NR++AIA 
Sbjct: 191 YQIFKKLNVKNRVKAIAW 208


>gi|170768176|ref|ZP_02902629.1| transcriptional regulator CsgD [Escherichia albertii TW07627]
 gi|170122942|gb|EDS91873.1| transcriptional regulator CsgD [Escherichia albertii TW07627]
          Length = 216

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|73537995|ref|YP_298362.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72121332|gb|AAZ63518.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia
           eutropha JMP134]
          Length = 960

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 80/232 (34%), Gaps = 13/232 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICEL--HNYDLDSGDIPNIL 68
             + + +  RL  +   ++  +     +++      R  ++  L  +  D     +  +L
Sbjct: 729 IDTAEAVLSRLRAVA--LRHEHAPRGVLDAIHLSAERASILVSLAHNELDDAWRRVMGLL 786

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                  +  H       I+   I        + Q    +   L    G+   +   +  
Sbjct: 787 AYCEARGWQRHATQQH--ILAAVIASRRGDTETAQDHAMIALRLGHKLGLVRALMDTYPG 844

Query: 129 NGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +  ++  +      +       E +  A     Q+ +   E      +    L++RE   
Sbjct: 845 SLDLLVAAAANEPQDPVLGFYVERLQAAAQVLPQMASGNTESTDHALAGQEELSDREADV 904

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++L      +++IA  LGLS  TV  +L +   KL+  +R +A+A+    G 
Sbjct: 905 VRLLAQALPNKKIARTLGLSPETVKWHLRNIFRKLNVSSRDEAVARMRDRGL 956


>gi|297154246|gb|ADI03958.1| putative two-component regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 222

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
             +         AG + F ++    +    G     +   ++A  +      A    +  
Sbjct: 84  FDLDEYAYEGLRAGASGFLLKDARPEELVAGIHAVATGDAVVAPSLTRRLLDAYAHRVLA 143

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             +         R L++RE   L   G G+T+ EIAE+L L+  TV  ++G    K+ A 
Sbjct: 144 PADAHAPADPRLRTLSDREREVLVAIGQGWTNTEIAERLVLTESTVKKHVGRVLAKIGAR 203

Query: 220 NRIQAIAKAIRFGYI 234
           +RIQA+  A   G +
Sbjct: 204 DRIQAVIMAYDAGLV 218


>gi|228970024|ref|ZP_04130734.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228789688|gb|EEM37560.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 86

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 33/66 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + A  LT RE   LQL   G     IA +L LS  TV  Y  +A  KL   N+ +A+ KA
Sbjct: 20  ATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKA 79

Query: 229 IRFGYI 234
           +  G I
Sbjct: 80  LEIGII 85


>gi|119960584|ref|YP_948678.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119947443|gb|ABM06354.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 224

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 17/136 (12%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEF-----------------LMLANEVIIEAHGACYQVIT 158
           + +A  V         VI                       +   + +     A + +  
Sbjct: 89  SFLALSVSDAAEDVVSVIRAGARGYVTKTISGKEISDAVIRVADGDAVFSPRLAGFVLDA 148

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                          L+ RE   ++L   GY+ +E+A++L +S+ TV  ++ +   KL  
Sbjct: 149 FGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSAVLRKLQL 208

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +    A     +
Sbjct: 209 SSRHELTKWAAERRLL 224


>gi|50120435|ref|YP_049602.1| two-component system response regulator protein [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610961|emb|CAG74406.1| two-component system response regulator protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 209

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 11/184 (5%)

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
            +    ++  YG       +    PI    I      ES   L  RL      F  I   
Sbjct: 23  LENDIQVVGQYGSAAQAWPHLLKQPIDVAVIDIAMPDESGLSLLTRLRQQRPNFRAIILS 82

Query: 122 VRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR 172
           +          +       L      E +++A                  +  ++     
Sbjct: 83  IYDTTAFVQSALDAGAGGYLTKRCGPEELVQAVRVVSSGGLYLCADALHAIRHQQQPPKE 142

Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE     L  +G + + IAE+L LS  TV+ +  +   KL   + ++ +  A++
Sbjct: 143 LLTLTPREREIFSLLINGISVKSIAEQLELSHKTVHVHRANILSKLQCESTVELVHFALQ 202

Query: 231 FGYI 234
              +
Sbjct: 203 HQLL 206


>gi|33865919|ref|NP_897478.1| DNA-binding response regulator [Synechococcus sp. WH 8102]
 gi|33633089|emb|CAE07900.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102]
          Length = 235

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACY 154
           +E   +  VR         G+ F   LG  +    G +   ++  +     I     A  
Sbjct: 102 LERETKALVREALDAF-ADGVIFKSSLGTGRGDLIGALHTLADGGVYYPAEIRRLAAAAP 160

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           Q                  LT+RE         G  S  IA+ LG+S+ TV  ++G+A  
Sbjct: 161 Q---------PDLPPLVEELTQRELDVAAAVARGLKSNAIADLLGISLETVKTHVGNAMD 211

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A +R Q    A+ +G I
Sbjct: 212 KLGARDRTQMAVTALLYGLI 231


>gi|84503539|ref|ZP_01001590.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84388029|gb|EAQ01077.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 196

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           LA + +I A      V        +  +  + +LT RE   ++    GY+++EIA +LG+
Sbjct: 105 LAPDELIRAVDRL--VAGGTFLPDEAVARMSFSLTPREVEVVRGIAAGYSNKEIARELGV 162

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              TV  ++ + + KL+A NR  A  +A   G +
Sbjct: 163 QEVTVKLHVKTLSRKLEARNRTHAAMRARDLGLV 196


>gi|152968206|ref|YP_001363990.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362723|gb|ABS05726.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 230

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +  H A   V     E  ++ +     LTERE   L   G G ++ E+ ++L +S  TV
Sbjct: 144 RLVGHYAADAVNPRRREAAERLT----TLTEREREVLACVGRGMSNAEVGKELFMSEATV 199

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++     KL A NR+Q    A   G +
Sbjct: 200 KTHVSRLLTKLQAHNRVQVAIVAHDAGLL 228


>gi|318076428|ref|ZP_07983760.1| two component system response regulator [Streptomyces sp. SA3_actF]
 gi|333026664|ref|ZP_08454728.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746516|gb|EGJ76957.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 209

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA---- 171
           +    LG    GY+   +    +   +   A G      +V    L   + R +A+    
Sbjct: 86  SILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVLDREVQDRLLATVRARPTASGQGL 145

Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L G G  +  IAEKL +S  TV  ++ +   K    +R +A+ +A+ 
Sbjct: 146 PADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALT 205

Query: 231 FGY 233
            G 
Sbjct: 206 AGL 208


>gi|315657544|ref|ZP_07910426.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492016|gb|EFU81625.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 221

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +   LT RE   L L  +  T+ +IA +L +S +TV  ++ S   K DA +R  A+A  
Sbjct: 155 PSDTVLTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGAVAHG 214

Query: 229 IRFGYI 234
           IR G I
Sbjct: 215 IRQGII 220


>gi|302549097|ref|ZP_07301439.1| LuxR family transcriptional regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466715|gb|EFL29808.1| LuxR family transcriptional regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 981

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 46/145 (31%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
            +     V+ + G   V            A        +                 +   
Sbjct: 829 DAAAWAQVVTAFGYGDVYERARCRLRYAEALVAAGRREEAVAEARAVRETADDLGALPLR 888

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                 V    L         A  LT RE   L+L   G ++  I E+L +S  T + ++
Sbjct: 889 EQVDALVRRGRLADTPGSGDRAGVLTAREQEVLRLLALGRSNRRIGEELFISGKTASVHV 948

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL A +R +A+A A R G I
Sbjct: 949 SNILAKLGASSRGEAVAVAYREGLI 973


>gi|325679856|ref|ZP_08159425.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108294|gb|EGC02541.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 208

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + + +   ++   AA  ++++E   ++    G +++EIA +L L   TV  Y+ +   KL
Sbjct: 131 LPELMTRREEFDFAAHGISDKERDIMEAVASGLSNKEIAAELFLGEGTVRNYISNLLDKL 190

Query: 217 DAVNRIQAIAK 227
              +R Q    
Sbjct: 191 GLRDRTQLAVY 201


>gi|281424125|ref|ZP_06255038.1| transcriptional regulator [Prevotella oris F0302]
 gi|281401782|gb|EFB32613.1| transcriptional regulator [Prevotella oris F0302]
          Length = 212

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 42/98 (42%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           + +  A +  +       Q + + L +  + +S    LT  E   L+    G T+ EIAE
Sbjct: 108 QEIREALDYAVRGRRFICQRMAEMLLVPMETASNRAKLTPTENEILKDIALGMTTREIAE 167

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           K   S HTVN +  +   KL      +A   A+R G +
Sbjct: 168 KRFSSFHTVNTHRKNIFRKLGVNTIHEATKYALRAGLV 205


>gi|15890219|ref|NP_355891.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15158405|gb|AAK88676.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 218

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTE 176
            P+ +   K G V F ++      + I++A  A  +            +  +S A  LT 
Sbjct: 97  IPMSVRAMKAGAVDFLTK--PFKEQDILDAVAAAMERDASRRRESAQNEAVTSLAGQLTP 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           RE   +     G  +++IA +LG+S  TV  + G+   K++A +    + KA
Sbjct: 155 REREVMGAVVRGLMNKQIAYELGISEVTVKLHRGNVMRKMEARSVADLVRKA 206


>gi|238792683|ref|ZP_04636315.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
 gi|238728039|gb|EEQ19561.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
          Length = 209

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 13/160 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      ES   L  RL   +  F  I   +             G   + ++   
Sbjct: 48  VHVAVMDISMPDESGLSLLKRLRQTMPNFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107

Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              E++                    L    +       LT RE    QL  +G + + I
Sbjct: 108 PD-ELVQALRTVSGGGLYLCADALRALRYMPQHPPQLAILTPREKEVFQLLINGVSVKSI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L LS  TV+ +  +   KL     ++ +  A++   +
Sbjct: 167 ADQLSLSHKTVHVHRANILGKLHCETTVELVHFALQHQLL 206


>gi|314924490|gb|EFS88321.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|315094740|gb|EFT66716.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315102902|gb|EFT74878.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328589|gb|EGE70349.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 242

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L   G+G T+ EIAE+L L+  TV  ++G    KL   +R+  +  A   
Sbjct: 176 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 235

Query: 232 GYI 234
           G +
Sbjct: 236 GLV 238


>gi|242239203|ref|YP_002987384.1| transcriptional regulator NarL [Dickeya dadantii Ech703]
 gi|242131260|gb|ACS85562.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech703]
          Length = 216

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 160 FLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
              L + R       + LT RE   L+L   G  ++ IA KL ++  TV  ++     K+
Sbjct: 139 AASLRENRHPGDRDIQQLTPREKDILKLIAQGLPNKVIARKLNITESTVKVHVKHLLKKM 198

Query: 217 DAVNRIQAIAKAIR 230
              +R++A    ++
Sbjct: 199 KLRSRVEAAVWVLQ 212


>gi|297199555|ref|ZP_06916952.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713519|gb|EDY57553.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L L   G  + EIAE LGLS  T   ++     KL A +R Q +  A   
Sbjct: 154 ECLSDREREVLALVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYES 213

Query: 232 G 232
           G
Sbjct: 214 G 214


>gi|111017210|ref|YP_700182.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110816740|gb|ABG92024.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 287

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 2/166 (1%)

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                          ++    +  +E  + +   +    L        G   P  +   +
Sbjct: 123 GLRANRPLGDRVTDRVMRGAARLARELDIRDEVDRRLAMLAASSGVDRG--VPRDVRVSE 180

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                + +   +               V      L      +   L+ RE+  L     G
Sbjct: 181 AITESYLALRDIADRLGDDGLGAEVQAVEQKLRRLTAPGDPSTVTLSRRESDVLAHVALG 240

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             + EIA++L LSV TV +Y+ +   KL+  +R +A+ +A R G +
Sbjct: 241 CRNAEIADRLSLSVETVKSYMRNLMGKLEVRSRQEAVVEARRQGLL 286


>gi|15613614|ref|NP_241917.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173666|dbj|BAB04770.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 212

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +V+   L             LT+RE + ++L G+G +++EIA+ L LSV TV  Y+ 
Sbjct: 129 VAAKVLPRLLHQQTGEVEERTARLTKRELAVVKLVGEGKSNQEIADALFLSVGTVKNYIS 188

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
            A  KL+  +R Q    A++   
Sbjct: 189 QALDKLELRDRTQLAIYAVKQQL 211


>gi|329957350|ref|ZP_08297870.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
 gi|328523063|gb|EGF50166.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
          Length = 215

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARNLTE 176
           L       V+F S       E +               Q+  +      +        T 
Sbjct: 94  LRHPDINAVVFKSSGTEALREAVCAVMVDENYYCQRYQQLYKEKNRPDDETELPDMLPTS 153

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+    G ++ EI+  L +S +TV  +  +  +K  A N    + KA+  GY+
Sbjct: 154 RELDVLKAIAQGMSTHEISRHLFISENTVEWHRKNLMLKFAARNATDLVIKALTKGYL 211


>gi|291299270|ref|YP_003510548.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568490|gb|ADD41455.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 993

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 3/164 (1%)

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D           P +W+            + ++         A +A   R    +   
Sbjct: 830 QIDAETARLRGASDPALWREAVAAFGYGEIYRQAIGRWRLA--EALLAGGNRADREEAAT 887

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYT 190
            +  +       +                L      ++ A  L T+RE + L+L   G+T
Sbjct: 888 QLALAAKTADKLDAAPLRKAVAALTRRARLRGEASAAAPANGLLTDRELAVLKLVAVGHT 947

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++++  +L +S  TV+ +L     KL   +R +A++ A   G +
Sbjct: 948 NKQVGAELFISDKTVSVHLSRVMAKLGVTSRTEAVSAAYTAGLL 991


>gi|198245542|ref|YP_002217566.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207858844|ref|YP_002245495.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197940058|gb|ACH77391.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206710647|emb|CAR35005.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|326625348|gb|EGE31693.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 200

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195


>gi|83747164|ref|ZP_00944207.1| Two-component response regulator [Ralstonia solanacearum UW551]
 gi|207727505|ref|YP_002255899.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207741890|ref|YP_002258282.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum IPO1609]
 gi|83726139|gb|EAP73274.1| Two-component response regulator [Ralstonia solanacearum UW551]
 gi|206590742|emb|CAQ56354.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206593276|emb|CAQ60203.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum IPO1609]
          Length = 210

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182
                GYV+  +    L   +     G  +      + + ++  +      LT RE   L
Sbjct: 98  RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVAPTPVEALTPREHDIL 157

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
                G++++ IA++LGLSV TV ++  +   KL    + + +  A+  G
Sbjct: 158 DGVAQGWSNKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVEAG 207


>gi|258623350|ref|ZP_05718354.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM573]
 gi|258584316|gb|EEW09061.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM573]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 38/78 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H +   +          ++ A  +LT RE   L+    G ++ +IAE L +S  TV ++L
Sbjct: 131 HVSSQLLHYYRYAFQTHQTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHL 190

Query: 210 GSATVKLDAVNRIQAIAK 227
                KL+  NR++AIA 
Sbjct: 191 YQIFKKLNVKNRVKAIAW 208


>gi|254441976|ref|ZP_05055460.1| transcriptional regulator, LuxR family protein [Octadecabacter
           antarcticus 307]
 gi|198250584|gb|EDY74908.1| transcriptional regulator, LuxR family protein [Octadecabacter
           antarcticus 307]
          Length = 146

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  A  LTERE   L+   +G +++EIA  L +   TV  ++ +   K+   NR QA   
Sbjct: 80  NPLADKLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALI 139

Query: 228 AIRFGY 233
                 
Sbjct: 140 GREANL 145


>gi|332716915|ref|YP_004444381.1| nodulation protein W [Agrobacterium sp. H13-3]
 gi|325063600|gb|ADY67290.1| nodulation protein W [Agrobacterium sp. H13-3]
          Length = 213

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNLTE 176
            P+ +   K G + F ++     ++ I++A    +Q    +             A+ LT 
Sbjct: 99  IPMTVRAMKAGAIDFLTK--PFRDQDILDAVSVAFQKDREMRQQSAANGAVVELAKTLTR 156

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   +     G  +++IA  LG+S  TV  + G+   K++A +  + + KA   G 
Sbjct: 157 REHEVMTAVVQGLMNKQIAFNLGISEITVKLHRGNVMRKMEARSVAELVRKAELLGL 213


>gi|218700457|ref|YP_002408086.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI39]
 gi|218370443|emb|CAR18250.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli IAI39]
          Length = 216

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|182413103|ref|YP_001818169.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840317|gb|ACB74569.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 209

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 11/156 (7%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEF 138
               +     + S  +   ++         +              L     GYV+ +S  
Sbjct: 54  DVALLDLRMPVRSGTEAIEQIRRDHPHARILVLTAFSGDEDIRKALRAGARGYVLKSSTG 113

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             L   +   A G  +        L  + S     LT RE   LQ    G  ++EIA  L
Sbjct: 114 EGLIPAIRAVAAGEPWIPNDVATRLAMRSS--YEELTSREIQVLQEIAKGKANKEIAAVL 171

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S +TV  +L +   KL    R +A+  A++ G I
Sbjct: 172 AISEYTVKDHLKNIMGKLHVAVRTEAVTAAVQRGII 207


>gi|110835015|ref|YP_693874.1| transcriptional regulator DegU [Alcanivorax borkumensis SK2]
 gi|110648126|emb|CAL17602.1| transcriptional regulatory protein degu (protease production
           enhancer protein) [Alcanivorax borkumensis SK2]
          Length = 216

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             + +   L      S    +LT ++   + +  +G  ++ IA +L +S  TV A++ + 
Sbjct: 130 ARRAMPPTLPDHSAMSDRITSLTPQQFRVMGMLMEGMQNKVIAYELDVSEATVKAHMTAI 189

Query: 213 TVKLDAVNRIQAI 225
             KL   NR QA+
Sbjct: 190 FRKLGVRNRTQAV 202


>gi|298485722|ref|ZP_07003801.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159748|gb|EFI00790.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 909

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   L L   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 845 SDCLSVRELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKA 904

Query: 231 FGYI 234
            G +
Sbjct: 905 LGLL 908


>gi|218549230|ref|YP_002383021.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii
           ATCC 35469]
 gi|218356771|emb|CAQ89399.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia fergusonii ATCC 35469]
 gi|324113838|gb|EGC07812.1| luxR family protein regulatory protein [Escherichia fergusonii
           B253]
 gi|325497648|gb|EGC95507.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii
           ECD227]
          Length = 216

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKISVKNRTQAVSWA 210


>gi|116626901|ref|YP_829057.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230063|gb|ABJ88772.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 224

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS     LT+RE   L++  +G + +EIA    LSV TV A+  +   KLD  N+ Q + 
Sbjct: 149 RSPRFGTLTKREREILKMLAEGKSVKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQ 208

Query: 227 KAIRFGYI 234
            AI+   I
Sbjct: 209 YAIQKKII 216


>gi|145294782|ref|YP_001137603.1| hypothetical protein cgR_0730 [Corynebacterium glutamicum R]
 gi|140844702|dbj|BAF53701.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 230

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   L+L   GYT +EI ++L +SV TV  +  +   K    NR      A
Sbjct: 165 PVVDALTRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQSNRHALTRWA 224

Query: 229 IRFGY 233
                
Sbjct: 225 HSRDL 229


>gi|19551845|ref|NP_599847.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389503|ref|YP_224905.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323377|dbj|BAB98005.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324837|emb|CAF19319.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 230

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   L+L   GYT +EI ++L +SV TV  +  +   K    NR      A
Sbjct: 165 PVVDALTRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQSNRHALTRWA 224

Query: 229 IRFGY 233
                
Sbjct: 225 HSRDL 229


>gi|262381581|ref|ZP_06074719.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296758|gb|EEY84688.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 254

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 40/72 (55%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L      A + LT+RE   L L   G+ S+EIA KL LS++TVN +  +   KL   N I
Sbjct: 182 LASAVVPADQQLTKREKEILLLIRQGFLSKEIASKLNLSIYTVNNHRKNILAKLKVDNVI 241

Query: 223 QAIAKAIRFGYI 234
           +AI +A  FG +
Sbjct: 242 EAINRAESFGIL 253


>gi|262195078|ref|YP_003266287.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078425|gb|ACY14394.1| two component transcriptional regulator, LuxR family [Haliangium
           ochraceum DSM 14365]
          Length = 212

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                    +    ++      L++RE   +     G T+ EIA  L +SV TV+ +   
Sbjct: 129 IATSFAERHIRPDAEK-PLVETLSKREFQVMTHLAQGMTNREIAGVLQISVKTVDTHRSH 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  N       AI+ GYI
Sbjct: 188 VLKKLELRNNSDITRFAIQHGYI 210


>gi|134093850|ref|YP_001098925.1| putative two-component system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737753|emb|CAL60798.1| putative two-component system response regulator LuxR family
           [Herminiimonas arsenicoxydans]
          Length = 232

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL--ELFKKRSSAARNL 174
           L     GYV+   + + +A  +                ++I +     +  +++     L
Sbjct: 112 LRAGATGYVLKERDDMEVALSIRSVLRGGAPIDPFIARRIIDELRPKTMPHEKAPNNETL 171

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE+  L L   G  + EI+E+L LS +T+  ++     KL   +R +AI +A   G +
Sbjct: 172 SPRESEILGLVAQGLANREISEQLHLSRYTIECHIKHIYRKLAVSSRTKAIHEARSRGLL 231


>gi|187930792|ref|YP_001901279.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|309780211|ref|ZP_07674962.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
 gi|187727682|gb|ACD28847.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|308920914|gb|EFP66560.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCL 182
                GYV+  +    L   +     G  +      + + ++    +    LT RE   L
Sbjct: 102 RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVMPTPVEALTPRERDIL 161

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +    GY ++ IA++LGLSV TV ++  +   KL    + + +  A+  G
Sbjct: 162 EGIAKGYANKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVELG 211


>gi|91774800|ref|YP_544556.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91708787|gb|ABE48715.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 212

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 19/146 (13%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-----------A 149
             R + G L    +   V          +           +  E + +            
Sbjct: 66  LRRFKAGSLRARFVVLTVSDAEDDLLEALRAGADGYLLKDMEPEQLCDSLKKIAEGVTVI 125

Query: 150 HGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                +V+   L+    +   A      LT+RE   LQ   DG +++ IA KLG+S  TV
Sbjct: 126 QDRLTEVLRQALQEQGSKPGPATPDQVSLTDREQEILQFLADGLSNKAIARKLGISDTTV 185

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             ++     KL   +R++A   A R 
Sbjct: 186 KVHVKHLLSKLRLTSRLEAAVWAHRQ 211


>gi|315103380|gb|EFT75356.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
          Length = 210

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 46/109 (42%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L + +   A G           L  +  S   +LT RE   L+ +
Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMVRMRSPRTSLTAREFDVLEAS 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G ++ +IAE L +S  TV   L     KL   +R  A+AKA   G+I
Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTDLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|237730333|ref|ZP_04560814.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905872|gb|EEH91790.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 209

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 13/160 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---- 142
           +    +      E+   L  RL      F  I   +          +       L     
Sbjct: 48  VSVAVMDIAMPDENGLSLLKRLRAQKPGFRAIILSIYDSPTFVQSALDAGASGYLTKRCG 107

Query: 143 NEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            E +++A        H  C   +   L   ++ +     LT RE     L   G + +EI
Sbjct: 108 PEELVQAVRSVGMGGHYLCADAL-RALRGGEQPAQVLEVLTPREREVFDLLVKGDSVKEI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A KL LS  TV+ +  +   KL   + I  +  A+    +
Sbjct: 167 AFKLDLSHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 206


>gi|108797570|ref|YP_637767.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119866657|ref|YP_936609.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126433193|ref|YP_001068884.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|108767989|gb|ABG06711.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119692746|gb|ABL89819.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126232993|gb|ABN96393.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 215

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 40/102 (39%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +  +    L  E  + A      +                 LT RE   L+L  +GY++ 
Sbjct: 112 LLAACRATLRGEPFLYAGAVTALIRDYLHRARSGDELPDTILTPREEEVLKLVAEGYSTR 171

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  L +S  TV+ +  +   KL   +R+     AIR G I
Sbjct: 172 EIAATLSISAKTVDRHRANILAKLGLRDRLALTRYAIRAGLI 213


>gi|294630526|ref|ZP_06709086.1| response regulator, two-component system [Streptomyces sp. e14]
 gi|292833859|gb|EFF92208.1| response regulator, two-component system [Streptomyces sp. e14]
          Length = 224

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERET  L L   G ++ EI+E+L ++  TV  ++    VKL   +R QA   A     
Sbjct: 161 LTERETEVLVLIAQGLSNGEISERLVVAESTVKTHVSRVLVKLGLRDRTQAAVFAYEARL 220

Query: 234 I 234
           +
Sbjct: 221 V 221


>gi|224539069|ref|ZP_03679608.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519314|gb|EEF88419.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 250

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 106 VRLEGGLLPFAGIA---FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162
           +R+      +  I    F +    + + ++        +   +   +           LE
Sbjct: 124 MRMRDHSGRYVHILHRMFYIASHSNGSVWLSLCLYNFSMDTSL---SCTILNSADGQTLE 180

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L K+       L++RE   LQL   G  S++IA+ L +S++TVN +  +   KL   N I
Sbjct: 181 LEKQN--CNDLLSDREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEKLQVNNSI 238

Query: 223 QAIAKAIRFGYI 234
           +A   A     +
Sbjct: 239 EACRIAKELHLL 250


>gi|37521368|ref|NP_924745.1| transcriptional regulator [Gloeobacter violaceus PCC 7421]
 gi|35212365|dbj|BAC89740.1| gsr1799 [Gloeobacter violaceus PCC 7421]
          Length = 74

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +   +A   LT RE     L   G ++ EIA  L +S  TV  ++     +L   +R Q
Sbjct: 3   SQPPPAALTALTPRERQVSGLIARGASNAEIARSLYISEGTVKFHITKILSRLGVRDRTQ 62

Query: 224 AIAKA 228
           A   A
Sbjct: 63  AAILA 67


>gi|16265098|ref|NP_437890.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|307309480|ref|ZP_07589136.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307320609|ref|ZP_07600023.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|15141237|emb|CAC49750.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|306893759|gb|EFN24531.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306900065|gb|EFN30685.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 219

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + + E  +    +   +          +S+    LT RE   L L   G ++++IA K
Sbjct: 118 RTVASGESYVAPTLSAKLLTGQLANSAPAKSNLVAELTRREQEVLHLVASGMSNKQIARK 177

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           L L   TV  ++     KLD  NR +A 
Sbjct: 178 LDLHEKTVKHHMTQIMAKLDVANRTEAA 205


>gi|118619050|ref|YP_907382.1| two component transcriptional regulatory protein [Mycobacterium
           ulcerans Agy99]
 gi|118571160|gb|ABL05911.1| two component transcriptional regulatory protein [Mycobacterium
           ulcerans Agy99]
          Length = 218

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 15/220 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +    FA+      +   +R+  I +     +D        ++   
Sbjct: 12  VDDHPIWRDAVARDLSDDGFAVVATADGVATAQRRAAIVKPDVVVMDMRLADGDGVQA-- 69

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
                             +   +  +    +   ++ G     G              V 
Sbjct: 70  --TTEVLKVSPA----TRVLVLSTSDEREDVLEAVKTGA---TGYLVKSASKAELADAVR 120

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
            T+    +    +       Y+ I    +  + R     +LTERET  L+    G ++++
Sbjct: 121 ATAAGRAVFTPSLAGLVLGEYRRIAQTADSSQDRP----SLTERETEILRYVAKGLSAKQ 176

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IAEKL LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 177 IAEKLSLSHRTVENHVQATFRKLQLANRVELTRYAIEHGL 216


>gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
 gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
          Length = 304

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT+RE   L     G ++++I E LGLS  TVN +L    VKL   NR  A  +A  
Sbjct: 242 ELTQREAEVLIWIAKGKSNKDIGEILGLSPRTVNKHLEQIFVKLGVENRASAAVRAAE 299


>gi|158315520|ref|YP_001508028.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158110925|gb|ABW13122.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 226

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 11/128 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----------ELFKK 166
           +   + +G          ++ L+ A   I           T  L              + 
Sbjct: 93  VTQALHVGASGFLGKDVGTDELLTAIRTIAGGDALLSPAATRALIARFLATPEPTATART 152

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             +    LT RE   + L  +GY++ +IA +L +S  T   ++  A  KL+A +R Q + 
Sbjct: 153 NPAVLTTLTAREREVMVLVAEGYSNHDIARRLVISPLTARTHVHRAMTKLEARDRAQLVV 212

Query: 227 KAIRFGYI 234
            A + G +
Sbjct: 213 IAYQSGLL 220


>gi|329936313|ref|ZP_08286078.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304109|gb|EGG47990.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                   L    +          I           S    LT RE + L L  +G ++ 
Sbjct: 128 SMAEALRRLERGKLPIPDTLARLFIRHAGRSRGTHRSPRVQLTPREQAVLGLIAEGLSNR 187

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            IA + G+S H V  ++ +   K +  NR QA++ A++ G +
Sbjct: 188 MIAHRFGISEHGVKRHVANLLAKFNCSNRAQAVSVALQQGLL 229


>gi|313107624|ref|ZP_07793809.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
 gi|310880311|gb|EFQ38905.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
          Length = 268

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             +       N+A    + +                           +    D F     
Sbjct: 32  QTLGQFAPVHNWAALIFSDSSPLILSFMEEEIEEIEPDPLISRYITGLYL-QDPFYQVSR 90

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           +     ++      +    + +         +    + + V L   +   +         
Sbjct: 91  NCRRGGLFHLADIVSEDFETTEYYNAYFAHYVVTDEVQYNVPLDGERTLCLSL-GSESRF 149

Query: 142 ANEVIIEAHGACYQV---------ITDFLELFKKRSSAAR-----------NLTERETSC 181
             E I         V           D +    K  +AA             LT RE+  
Sbjct: 150 GAEQIALFELLRPWVIALMKKRIHFEDAVREEAKPIAAAEVEVQPWRGLISPLTARESDV 209

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           ++L  DGY+++EIA++L LS+ T+  +      KL+  +  +
Sbjct: 210 IRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLNVKSHSE 251


>gi|307946995|ref|ZP_07662330.1| putative transcriptional regulatory protein SgaR [Roseibium sp.
           TrichSKD4]
 gi|307770659|gb|EFO29885.1| putative transcriptional regulatory protein SgaR [Roseibium sp.
           TrichSKD4]
          Length = 216

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 48/99 (48%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G   F+     +   +   A  A  Q++  FL++ +  S     LT+RE + L+    G
Sbjct: 104 AGAAGFSPRNGPVEGLLETCAAVAAGQMVFPFLDVRELHSDPIHLLTKREKALLEALSKG 163

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            ++ ++A + G+S +TV  +L +   KL   +R QA+A 
Sbjct: 164 LSNRQLASEFGISANTVKFHLSNLYEKLSVTSRTQAVAF 202


>gi|294013470|ref|YP_003546930.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676800|dbj|BAI98318.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 250

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +R   A  L++RE   L+    G  ++ I++++ +S  TV  ++ +   KL   NR
Sbjct: 146 ALEVERPVDAACLSDRELEILRWLIMGCPNKVISKRMDISEATVKVHVKAVLRKLRVKNR 205

Query: 222 IQAIAKAIRFGY 233
            QA   A   G 
Sbjct: 206 TQAAIWAANHGM 217


>gi|284031285|ref|YP_003381216.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283810578|gb|ADB32417.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L L G G ++ EIA +L L   TV AY+ +   +L   NR+QA   A   
Sbjct: 157 DVLSPRELEVLSLVGAGLSNAEIAARLFLVEGTVKAYVSAVLTRLGVKNRVQAAIIAYEA 216

Query: 232 GYI 234
           G +
Sbjct: 217 GLV 219


>gi|218550792|ref|YP_002384583.1| HTH-type transcriptional regulator YhjB [Escherichia fergusonii
           ATCC 35469]
 gi|218358333|emb|CAQ90980.1| putative HTH-type transcriptional regulator YhjB [Escherichia
           fergusonii ATCC 35469]
          Length = 227

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A    +  +     ++    D+L + +  S   + L+ R+   L +   G +++E
Sbjct: 129 PRDSGAETFALALNSVVMGMMFLPGDWLSMPETESRDIKTLSVRQREILTMLAAGESNKE 188

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 189 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 222


>gi|34496978|ref|NP_901193.1| nitrate/nitrite response regulator protein [Chromobacterium
           violaceum ATCC 12472]
 gi|34102834|gb|AAQ59198.1| nitrate/nitrite response regulator protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 212

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G+ + EIA+ LG S  T+  ++ S   KL   +R++A+ + +  
Sbjct: 150 ERLTGREVEVLALMAGGFNNREIADALGPSEGTIKNHVSSILSKLGVRDRVRAVLRGLEL 209

Query: 232 GYI 234
           GYI
Sbjct: 210 GYI 212


>gi|333024002|ref|ZP_08452066.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332743854|gb|EGJ74295.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 260

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G ++ +IA  L +S  TV  ++ +   K    +R QA+  A   G 
Sbjct: 192 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 251

Query: 234 I 234
           +
Sbjct: 252 V 252


>gi|312884591|ref|ZP_07744295.1| transcriptional regulator, LuxR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367903|gb|EFP95451.1| transcriptional regulator, LuxR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 215

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  + +IAE L + + TV  +  +   KLDA N    +  A R G 
Sbjct: 155 LTPREKQVLKLIFEGKRNRDIAEALLIGLKTVETHRMNIMRKLDAHNVADLMKWAHRMGI 214


>gi|307325965|ref|ZP_07605164.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888457|gb|EFN19444.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 259

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 38/80 (47%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           GA  +V+               NL+ RE   LQL GDG T+ +IAE+L L+  TV   + 
Sbjct: 172 GATARVMARLRGPAPSGPVELENLSPREREILQLIGDGLTNRQIAERLFLAEKTVKNRIS 231

Query: 211 SATVKLDAVNRIQAIAKAIR 230
           +   KL    RIQA   A R
Sbjct: 232 AILSKLGVGRRIQAAVIAER 251


>gi|304410764|ref|ZP_07392382.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307304859|ref|ZP_07584609.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304351248|gb|EFM15648.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306912261|gb|EFN42685.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 209

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE---AHGACYQVI 157
              +    +    +   V         ++              ++++E        ++VI
Sbjct: 69  LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVI 128

Query: 158 TDFLE--LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +D +E  L++ + +        +LT RE   L+   +G ++  I+E L +S  TV  ++ 
Sbjct: 129 SDEVEEYLYELKDATDEQEWISSLTPRELQILEQLAEGLSNRMISEHLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|297159648|gb|ADI09360.1| putative response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 221

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 4/136 (2%)

Query: 99  ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT 158
           E+   ++  L  G   F G              V      L       +           
Sbjct: 88  ETEEYVARALRAGASGFLGKDVTADALLTAIRTVASGDALLSPLATRALITRFLATPAPG 147

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L   ++ +     LT RE   + LA +G ++ EIAE+L +S  TV +++  A  KL A
Sbjct: 148 NHLAPPERLA----VLTAREREVMALAAEGMSNHEIAERLVVSPLTVRSHIHRAMTKLHA 203

Query: 219 VNRIQAIAKAIRFGYI 234
            +R Q +  A + G +
Sbjct: 204 RDRAQLVVVAYQSGLV 219


>gi|291301776|ref|YP_003513054.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570996|gb|ADD43961.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 132

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 36/89 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +  +      I    +           LTERE + +    +G ++  I  +L +S  TV
Sbjct: 43  RVLLNALAAAGIDLEPKPPVVVRPPGCRLTERELTVVIGMSNGKSNARIGRELHISEDTV 102

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             Y      KL   +R QA+A A+R G I
Sbjct: 103 KTYARRLFRKLGVGDRTQAVAVALRTGLI 131


>gi|284043606|ref|YP_003393946.1| GAF modulated LuxR family transcriptional regulator [Conexibacter
           woesei DSM 14684]
 gi|283947827|gb|ADB50571.1| GAF modulated transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 277

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 152 ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +     + +  +  SA     L+ RE    +L  DG T+ EI  +LG++++TV  ++
Sbjct: 193 RFSEAQRAAVRMAHRNVSAEVRDALSARELQVFELLVDGLTNAEIGHELGIALNTVKQHV 252

Query: 210 GSATVKLDAVNRIQAIAK 227
                KL A +R++A+  
Sbjct: 253 RHIYEKLGARSRVEAVRM 270


>gi|261218338|ref|ZP_05932619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320813|ref|ZP_05960010.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923427|gb|EEX89995.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293503|gb|EEX96999.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 157

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   +  R LT ++T  L +  +G  +++IA +LG+S  TV A++ +   KL   +R QA
Sbjct: 84  ESPIARLRTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 143

Query: 225 IAKAIRFG 232
           +    R G
Sbjct: 144 VILLSRIG 151


>gi|258654847|ref|YP_003204003.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558072|gb|ACV81014.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 233

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT----DFLELFKKRSSAARNLTER 177
           +  G             L+ +   +          +T    + +    +   A   LTE+
Sbjct: 116 IMAGAAGYVLKQIRGSDLVDSVRRVAAGQSLLDPAVTARVLERVRKGPELDPALAPLTEQ 175

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E   L L G+G T+ +IAE + L+  TV  Y+ S   KL    R QA   A +   
Sbjct: 176 ERRVLALIGEGMTNRQIAEAMFLAEKTVKNYVSSLLAKLGLQRRTQAALFAAKHHL 231


>gi|238059874|ref|ZP_04604583.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881685|gb|EEP70513.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 217

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               V+   +E  +  +SA   LT+RE   L    DG ++ EI  ++ LS  TV  ++ +
Sbjct: 128 VSRTVVDWRVENGEDAASAIARLTDREREILVHVADGLSNAEIGTRMYLSGGTVKDHVSA 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R+QA   A R G +
Sbjct: 188 ILTKLKVTSRVQAALIAQRAGLL 210


>gi|222085009|ref|YP_002543538.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722457|gb|ACM25613.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 213

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           +         I+  +  G         +++ ++ A E +          + D L   +  
Sbjct: 84  MLSMHDSREYISSSIMHGAVGYILKDVSTDEVVCAIETVASGGTYFSSGVRDILMADEAG 143

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             A+  LT RE   L L   G ++ EIAE+LG++  T   +  +   KL        I  
Sbjct: 144 MEAS-PLTPREHHILGLIVTGRSNREIAEELGITPATAETHRKNLKRKLGIATTAGLIRY 202

Query: 228 AIRFGY 233
           A+  G 
Sbjct: 203 ALDHGI 208


>gi|170756196|ref|YP_001781032.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           B1 str. Okra]
 gi|169121408|gb|ACA45244.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           B1 str. Okra]
          Length = 217

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     S   NLTERE + ++   +G++++EIAE++ LS  T+   + +   KLD  +R
Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDR 203

Query: 222 IQAIAKAIRFGYI 234
            Q    A +   +
Sbjct: 204 TQIAIFAFKNNIV 216


>gi|251795693|ref|YP_003010424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
 gi|247543319|gb|ACT00338.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
          Length = 866

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
               L  E+   A+    ++          + + +    LT RE   L+  G+G ++EEI
Sbjct: 767 SEASLDEEMAAYANLLRERISEGGWTASYARMKDNLTVKLTGREREVLRKIGEGLSNEEI 826

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L LS  TV  Y  +   KL   NR+QAI++A   G +
Sbjct: 827 GGQLFLSTGTVKKYAYNIYEKLQVKNRVQAISRAKEMGLL 866


>gi|149914006|ref|ZP_01902538.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149812290|gb|EDM72121.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 97  VIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNGYVIFTSEFLMLANEVII 147
              S  +              +   +                GY++  ++   +  +++ 
Sbjct: 60  PDGSGVEAVHACAAADWLVDAVVVSIFGDEARVLEAIQAGAKGYLLKGADLGQIGTDILS 119

Query: 148 EAHG---ACYQVITDFLELFKK-----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
              G       +    L + K             LTERE   LQ    GY   EIA+ LG
Sbjct: 120 VLDGGSPISPGIARHLLAVVKDGGTGSVEPGLSPLTEREAEILQAVARGYKRHEIAQHLG 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TV  ++ S   KL+    ++A+A+A + G++
Sbjct: 180 ISAGTVGNHITSIYRKLEVSTNMEAVARASKKGFL 214


>gi|159039733|ref|YP_001538986.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157918568|gb|ABV99995.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 228

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 18/161 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +   +         +A  V         +I +         ++ + + 
Sbjct: 68  LDVHMPEGGGRAVLEAIRRTHPHVRFLALSVSDAAEDVIGLIRSGARGYVTKTISPDDLA 127

Query: 148 EAHGA--------CYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEE 193
            A             ++    L+ F  R            LT RE   L+L   GY  +E
Sbjct: 128 AAVRRVADGDAVFSPRLAGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKE 187

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA++L +S+ TV  ++ +   KL   +R +    A     +
Sbjct: 188 IAKELYISIKTVETHVSNVLRKLQMSSRYELSRWAADRRLV 228


>gi|330467583|ref|YP_004405326.1| two component system response regulator [Verrucosispora maris
           AB-18-032]
 gi|328810554|gb|AEB44726.1| two component system response regulator [Verrucosispora maris
           AB-18-032]
          Length = 227

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                    S     LT RE   L L   G T++E+AE++  SV T   ++    +KL A
Sbjct: 140 AARSHEPPASPGLDQLTAREREVLMLIARGLTNQELAERMSCSVATAKTHVSRVMMKLGA 199

Query: 219 VNRIQAIAKAIRFGYI 234
            +R+Q +  A  +G +
Sbjct: 200 RDRVQVVVLAYEWGLV 215


>gi|326559661|gb|EGE10074.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 46P47B1]
 gi|326559921|gb|EGE10320.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 103P14B1]
 gi|326561209|gb|EGE11574.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 7169]
 gi|326566300|gb|EGE16451.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 12P80B1]
 gi|326567904|gb|EGE18001.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC1]
 gi|326569517|gb|EGE19577.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC8]
 gi|326572718|gb|EGE22704.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC7]
 gi|326573892|gb|EGE23844.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 101P30B1]
 gi|326577343|gb|EGE27230.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis O35E]
          Length = 218

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           ++ ++  LTERE    ++   G +++ I  KLG++  TV  ++     K+    R++   
Sbjct: 152 KTDSSHELTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAV 211

Query: 227 KAI 229
            A+
Sbjct: 212 WAV 214


>gi|313836389|gb|EFS74103.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928854|gb|EFS92685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971268|gb|EFT15366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906399|gb|EGG26174.1| putative two-component response regulator [Propionibacterium sp.
           P08]
          Length = 224

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L   G+G T+ EIAE+L L+  TV  ++G    KL   +R+  +  A   
Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217

Query: 232 GYI 234
           G +
Sbjct: 218 GLV 220


>gi|300897182|ref|ZP_07115632.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300359034|gb|EFJ74904.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
          Length = 216

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 94  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELISAVHTVATGGCYLTPDI--AIKL 150

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 151 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 210

Query: 227 K 227
           +
Sbjct: 211 R 211


>gi|298241349|ref|ZP_06965156.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554403|gb|EFH88267.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
               + L  EV+                  + ++     LTERE   L+    G  S+EI
Sbjct: 126 ARGDIFLQPEVMARILVRTTDAF--HPTPSRSQAEGESELTERERDVLEAVACGERSKEI 183

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +LG+S+ TV ++L S   KL   +R  A+A  I+ G +
Sbjct: 184 ASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGIKRGLL 223


>gi|291297909|ref|YP_003509187.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567129|gb|ADD40094.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 134

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R L+ERET  L     G ++ EI  +L ++  TV  +      KL A +R  A+A+A R 
Sbjct: 71  RGLSERETQVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRI 130

Query: 232 GYI 234
           G +
Sbjct: 131 GIL 133


>gi|256380091|ref|YP_003103751.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924394|gb|ACU39905.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H      +   L           +L+ +E   L L  +G T+ +IA +L L+  TV  Y
Sbjct: 127 LHAGVTATVLQRLRGGPVEDPRYASLSPQERRILDLIAEGLTNRQIAGRLFLAEKTVKNY 186

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           + S   KL    R +A   A + 
Sbjct: 187 VSSLLHKLGFDRRTEAGVYAAKR 209


>gi|226228812|ref|YP_002762918.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226092003|dbj|BAH40448.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 207

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G +++ I   L +S  TV  ++ +   KLDA +R  A+  AIR 
Sbjct: 143 EGLTSRELQILHLVAGGLSNKRITSSLAISEDTVKGHVSNILSKLDANDRTHAVTLAIRR 202

Query: 232 GYI 234
           G I
Sbjct: 203 GVI 205


>gi|209696260|ref|YP_002264190.1| probable CsgAB operon transcriptional regulatory protein
           [Aliivibrio salmonicida LFI1238]
 gi|208010213|emb|CAQ80542.1| probable CsgAB operon transcriptional regulatory protein
           [Aliivibrio salmonicida LFI1238]
          Length = 215

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +LT RE   L+L   G ++ +IA  L +S +TV  +L +   KL+  NR+QA+  
Sbjct: 150 SLTTREKEILKLLSLGASNIDIANTLFVSENTVKTHLHNVFKKLNVKNRLQAMIW 204


>gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L L   G ++ +I ++L LS  T+  ++ S   K    NR + +  AI  G 
Sbjct: 146 LTQREKDVLALLVAGLSNAQIGDRLHLSARTIEKHVSSLFQKTAVHNRAELVRLAIEQGL 205

Query: 234 I 234
           +
Sbjct: 206 V 206


>gi|332291578|ref|YP_004430187.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169664|gb|AEE18919.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 476

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 37/70 (52%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              L+    + S   NL++RET  L     GYT+++I E+L +S+ TV  +  +   KLD
Sbjct: 405 ERTLQESVAQLSTTHNLSKRETEVLLELSKGYTNKQIGEELHISIATVKFHTSNIYAKLD 464

Query: 218 AVNRIQAIAK 227
             NR + I K
Sbjct: 465 VSNRSEVIEK 474


>gi|323160954|gb|EFZ46875.1| transcriptional regulatory protein uhpA domain protein [Escherichia
           coli E128010]
          Length = 145

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 23  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 79

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 80  ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 139

Query: 227 K 227
           +
Sbjct: 140 R 140


>gi|312138551|ref|YP_004005887.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311887890|emb|CBH47202.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 245

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   +   +   ++ +     L+++E +   L G G T+ EIAE+L L+  T+  Y
Sbjct: 160 LDSRATAALMQRMR-SERTADPLAELSDQERAVFDLIGQGLTNREIAERLFLAEKTIKNY 218

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           +     KL    R QA   A   
Sbjct: 219 VSRLLAKLGMQRRTQAAVLATEL 241


>gi|260433757|ref|ZP_05787728.1| transcriptional regulatory protein DegU [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417585|gb|EEX10844.1| transcriptional regulatory protein DegU [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 213

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 156 VITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                L + K  +          LT RE   L+    G +++EIA +L +   TV  Y+ 
Sbjct: 130 ASRVLLAIQKGNTPTGDRGVLGDLTHREEEILRRVAKGLSNKEIAAELSIQEKTVKHYMT 189

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           S   KL A NR++A   A   
Sbjct: 190 SILSKLHARNRVEAALIAHEA 210


>gi|209863937|gb|ACI88882.1| AlnR5 two component response regulator [Streptomyces sp. CM020]
          Length = 201

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           + L       I    A  +VI   L L       A+ LT RE   L+LA  G     IA+
Sbjct: 105 DALPSELAQAIRKVAAGQRVIDPQLALM-AWDGPAQQLTPREVDVLRLAAAGEDVRVIAK 163

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LS+ TV  YL +   KL A NR+ A+  A   G I
Sbjct: 164 ELHLSIGTVRNYLTTIVHKLGARNRVDAVRIARDNGVI 201


>gi|148240284|ref|YP_001225671.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848823|emb|CAK24374.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 241

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 5/118 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLELFKKRSSAARNLTE 176
           +  G H    V       +      I+            V+         +S   + LT 
Sbjct: 114 IEAGCHGICAVQSAGTGAVATAFTAIDSDGQYLDPLISGVLHHSRLPSSGQSLPLQELTM 173

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+    G ++E IA  L +S+ TV +++ S   KL A +R  A+  A R G +
Sbjct: 174 REEDVLRGLCRGMSNEAIANDLVVSIETVKSHVSSLLRKLAAKDRTAAVVTAFREGLV 231


>gi|145594340|ref|YP_001158637.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303677|gb|ABP54259.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 230

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 39/121 (32%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG +  +         V            +  E                   + A  +
Sbjct: 106 LRAGASGFLLKNGTPEALVAAIRVVARGEGLIAPELTRRVIAAFARPGGEPTTTAVALSD 165

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G ++ EIA  L L   TV  ++     KL   +R+QA+  A   G 
Sbjct: 166 LTPREHEVLVLVASGASNAEIAANLRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGV 225

Query: 234 I 234
           +
Sbjct: 226 V 226


>gi|302525609|ref|ZP_07277951.1| predicted protein [Streptomyces sp. AA4]
 gi|302434504|gb|EFL06320.1| predicted protein [Streptomyces sp. AA4]
          Length = 1006

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 169  SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                 LT+RE   L+    G T+ ++ E+L +S  TV+ +L     KL A  R +A+A A
Sbjct: 937  PQVDPLTDRERDVLERVALGRTNRQVGEELYISEKTVSVHLSRVMAKLGASRRAEAVAIA 996

Query: 229  IRFGYI 234
               G +
Sbjct: 997  YDRGLL 1002


>gi|300855506|ref|YP_003780490.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435621|gb|ADK15388.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 824

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NL++RE   L L   G    ++A KLG+S  T   +L +   KL    + +A+  A  +G
Sbjct: 763 NLSQRELEVLSLTAKGLKRTQVACKLGISESTAKTHLQNIYKKLQVSGKFEAVKIARMYG 822

Query: 233 YI 234
            I
Sbjct: 823 II 824


>gi|240948096|ref|ZP_04752506.1| CitB protein [Actinobacillus minor NM305]
 gi|240297576|gb|EER48068.1| CitB protein [Actinobacillus minor NM305]
          Length = 201

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  + +S    LT+RE    +L   G+ ++EIA+KL LS  TV+ +  +A  KL+  N +
Sbjct: 131 VSSRNNSPIEQLTKREREICELLIQGFDAKEIADKLNLSFKTVHVHRANAMSKLNVKNNV 190

Query: 223 QAI 225
           +  
Sbjct: 191 ELA 193


>gi|256423275|ref|YP_003123928.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038183|gb|ACU61727.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 213

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   LQL  +G  S  IAE+L +S  TV  +  +   K    N +  + +A 
Sbjct: 149 TIPELTKREKQILQLLAEGRKSAAIAEELFISPLTVKTHRATLLHKFQVSNIVTLVNRAK 208

Query: 230 RFGYI 234
             G I
Sbjct: 209 ETGLI 213


>gi|182413500|ref|YP_001818566.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840714|gb|ACB74966.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 220

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +       L   V  +      ++        K     A  L+ RE   L L  +G
Sbjct: 115 AAIRLTARGESFLEPSVTAKVLAHFSRLAQQAPRPPKPPPPLAEPLSVREREVLGLLAEG 174

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +++EIA  L ++  TV  ++ +   KL A++R QA  +    G +
Sbjct: 175 RSNKEIASALAIAEGTVKNHMSNVLGKLGALDRTQAALRGRELGLV 220


>gi|209547437|ref|YP_002279355.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538681|gb|ACI58615.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 959

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 5/150 (3%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIE 148
                E   +S   LS             +  V  G    G   F     L  +    + 
Sbjct: 807 DLDAWEAAAQSWADLSQPFRQAYALMQAGSAAVNAGKRARGADHFGRAADLAHSIGARLL 866

Query: 149 AHGA---CYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           A+       +   D     +  +  A+  LT+RE   L+L   G ++ EIA+ L +S  T
Sbjct: 867 ANQIETLAAKARIDLRGGKEGSTPKAKLGLTDREFEVLRLVAAGQSNREIADNLFISSKT 926

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + ++ +   KL   +R  A A A R   +
Sbjct: 927 ASVHVSNILSKLAVPSRGAAAAMAHRLRIV 956


>gi|56459266|ref|YP_154547.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56178276|gb|AAV80998.1| Response regulator, LuxR family (CheY-HTH) [Idiomarina loihiensis
           L2TR]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +LT +E   ++L   G  ++EIAE L +S HTV  +L S   K  A NR++ +  
Sbjct: 153 SLTPQELKVIELVATGARNKEIAEHLNISAHTVKTHLSSIFRKTGARNRVELLKW 207


>gi|288924538|ref|ZP_06418483.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344115|gb|EFC78699.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 72/214 (33%), Gaps = 17/214 (7%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L +     + ++  + AR+  +  +  A       + I  LH +                
Sbjct: 12  LDDHEIVRNGLRQTL-ARHDDIEVVGEAGLAAEALRRIPALHPHVAVLDGRLPDGSGIDV 70

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +     G+  +I  S  ++  + S+    +    G +        +R          
Sbjct: 71  CREIRSALPGVACLILTSYDDDEALFSA---IMAGAAGYVLKE-----IRGNDLVGAIRT 122

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
             S   +LA  V         + + + L        A   L +RE   LQL  DG T+ +
Sbjct: 123 VASGQSLLAPSV--------TRRVLERLRDGPHEDPAMATLNQREREILQLIADGLTNRQ 174

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I  +LGLS  TV  Y+ S   KL   +R QA   
Sbjct: 175 IGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVY 208


>gi|226315402|ref|YP_002775298.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226098352|dbj|BAH46794.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 596

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 150 HGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                +V  +     ++      +    LT+RE   LQL  DG   + IA KL LS  TV
Sbjct: 508 QLIATRVFEEMKRQREQLEKYSPNDPYGLTKREREILQLLSDGLRYKSIATKLYLSEGTV 567

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             Y  +   KL   NR +AI  A     +
Sbjct: 568 RNYCSTLYSKLGVSNREEAIELARTENIL 596


>gi|91227214|ref|ZP_01261673.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269967094|ref|ZP_06181162.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|91188742|gb|EAS75030.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269828353|gb|EEZ82619.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
          Length = 212

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G +S++IA  L +S  TV  +  +   KLD  +  +    A   G
Sbjct: 150 PLSRREEAVLKLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209

Query: 233 Y 233
            
Sbjct: 210 L 210


>gi|254228131|ref|ZP_04921560.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262393907|ref|YP_003285761.1| transcriptional regulator LuxR family protein [Vibrio sp. Ex25]
 gi|151939204|gb|EDN58033.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262337501|gb|ACY51296.1| transcriptional regulator LuxR family protein [Vibrio sp. Ex25]
          Length = 212

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+L   G +S++IA  L +S  TV  +  +   KLD  +  +    A   G
Sbjct: 150 PLSRREEAVLKLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAFETG 209

Query: 233 Y 233
            
Sbjct: 210 L 210


>gi|116621908|ref|YP_824064.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225070|gb|ABJ83779.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+R+   LQL  +G  ++EI E   +SV TV  +      +L A +  +    AI+ 
Sbjct: 148 PALTDRQRHILQLLAEGKQNKEIGEIAHISVRTVEFHRSRLMSRLGAHSVAELTRFAIQE 207

Query: 232 GYI 234
           G I
Sbjct: 208 GLI 210


>gi|297563175|ref|YP_003682149.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847623|gb|ADH69643.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 225

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 44/127 (34%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                   +G              +   +E     +  +              L      
Sbjct: 99  ARALSGGASGFVLKSGDPRQLVEGLRAVAEGGAYLSPEVARRVIDELDASGGRLSRASAA 158

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LTERE   L L G G +++EIA +L ++  TV  ++GS   +LD  NR+QA   
Sbjct: 159 RERVGRLTERERGVLALVGQGCSNDEIARRLAIAPGTVKVHVGSILTRLDVRNRVQAAVV 218

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 219 AYEAGLV 225


>gi|256787147|ref|ZP_05525578.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289771044|ref|ZP_06530422.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289701243|gb|EFD68672.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARN--- 173
           L     G+++  S+   L + V   A            +++T+       RS  +     
Sbjct: 94  LDQGVAGFLLKASDPRDLISGVRAVASGGSCLSPLVARRLMTELRRAPSPRSEVSGERTT 153

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L + G G ++ EIA++L L   T+  Y+ +   +L+  NR+QA   A   G
Sbjct: 154 LLTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAG 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|239945267|ref|ZP_04697204.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991728|ref|ZP_04712392.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448730|ref|ZP_06588120.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351677|gb|EFE78581.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 250

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
              +         +                 +LT RE     L   G ++ E+A +L L+
Sbjct: 138 DALLAPAITRRLVRRFAQHGSGTAALHRDLASLTPRELEVFGLLARGLSNAELAARLHLA 197

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  ++     KL   +R+QA+  A   G +
Sbjct: 198 EATVKTHVARILAKLGLRDRVQAVIVAYETGLV 230


>gi|170760443|ref|YP_001786768.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407432|gb|ACA55843.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 217

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     +   NLTERE + ++   +G +++EIAEK+ LS  T+   + +   KLD  +R
Sbjct: 144 ELNDDDINLKYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDR 203

Query: 222 IQAIAKAIRFGYI 234
            Q    A +   +
Sbjct: 204 TQIAIFAFKNNIV 216


>gi|118581564|ref|YP_902814.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118504274|gb|ABL00757.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 203

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 8/123 (6%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY---QVITDFLELFKKRSS 169
           I   +       G  +               E++            +         +   
Sbjct: 79  IILTMHDDPLMYGRAVSAGAHGFILKDDAYEELLSALRTVAAGGTAISRAIQHAAIEPEP 138

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LTERE   L L   G T+  IA+ LG+S+ TVN +  +   KL+  +  + +  ++
Sbjct: 139 PVAELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRTNLMGKLNLHSTAELVRYSL 198

Query: 230 RFG 232
             G
Sbjct: 199 LTG 201


>gi|94311025|ref|YP_584235.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93354877|gb|ABF08966.1| transcriptional regulator, luxR family [Cupriavidus metallidurans
           CH34]
          Length = 217

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   ++    G +++ IA  LG++  TV  ++ +   KL+  +R+Q    A+ 
Sbjct: 153 AAPLTARERDIVRGLVRGESNKMIARALGVAESTVKIHVQNILKKLNLASRVQVAVYAVE 212

Query: 231 FGY 233
            G 
Sbjct: 213 HGL 215


>gi|323155344|gb|EFZ41527.1| transcriptional regulatory protein uhpA [Escherichia coli EPECa14]
          Length = 173

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 51  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 107

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 108 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 167

Query: 227 K 227
           +
Sbjct: 168 R 168


>gi|239930061|ref|ZP_04687014.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438397|ref|ZP_06577787.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341292|gb|EFE68248.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 227

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETS 180
           V      +G  +  +   +LA           +        +    +      LT RE S
Sbjct: 107 VHAAELLHGIRVVAAGESVLAPSATRRL--IGHYASGAVTGIGGGSTPRELDGLTARERS 164

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L L   G T+ EI  +LG++V TV +++ +   KL   +R+QA   A   G 
Sbjct: 165 VLALVASGLTNAEIGGQLGITVGTVKSHVNALLRKLGLRDRVQATILAYDLGL 217


>gi|168184300|ref|ZP_02618964.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Bf]
 gi|237794731|ref|YP_002862283.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           Ba4 str. 657]
 gi|182672663|gb|EDT84624.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Bf]
 gi|229261330|gb|ACQ52363.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Ba4 str. 657]
          Length = 217

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     S   NLTERE + ++   +G +++EIAE++ LS  T+   + +   KLD  +R
Sbjct: 144 ELNDDDISLKYNLTEREINIIRQIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDR 203

Query: 222 IQAIAKAIRFGY 233
            Q    A +   
Sbjct: 204 TQIAIFAFKNNI 215


>gi|159898031|ref|YP_001544278.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891070|gb|ABX04150.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 876

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +       +L+    S    L++RE   L L   G++++ I ++L L++ TV  + 
Sbjct: 790 QILAHFTTERMPQLYPTTPSLPEMLSQRELEILSLIAQGHSNQAICQQLHLALDTVKGHN 849

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL    R +A+A+A   G +
Sbjct: 850 RRIFEKLQVQRRTEAVARARELGLL 874


>gi|297580291|ref|ZP_06942218.1| transcriptional regulator UhpA [Vibrio cholerae RC385]
 gi|297535937|gb|EFH74771.1| transcriptional regulator UhpA [Vibrio cholerae RC385]
          Length = 208

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +    +    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALTQSE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + S+    +        V       C   + +        ++   +LT+RE     L 
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G   +EIA+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 157 VQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|333029774|ref|ZP_08457835.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM
           18011]
 gi|332740371|gb|EGJ70853.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM
           18011]
          Length = 206

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           I++ H   ++       +    +     L+ RE   + L   G T++EIA+KL +S  TV
Sbjct: 114 IMDLHRNAHEP-NHSKNMEAINAHQVHELSPREIDVISLIAVGKTNKEIAKKLSISQTTV 172

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +  + T KL   +       A+  GYI
Sbjct: 173 ITHRKNITDKLGIKSVSGLTIYAVINGYI 201


>gi|326331931|ref|ZP_08198217.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325950244|gb|EGD42298.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 219

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RET  L+L   G +  +IA++L LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 156 LTDRETEILKLVAKGLSYRQIADRLVLSHRTVQNHVQNTLRKLQMHNRVELTRYAIEQGL 215


>gi|296112985|ref|YP_003626923.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis RH4]
 gi|295920679|gb|ADG61030.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis RH4]
 gi|326574060|gb|EGE24009.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis CO72]
          Length = 218

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           ++ ++  LTERE    ++   G +++ I  KLG++  TV  ++     K+    R++   
Sbjct: 152 KTDSSHELTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAV 211

Query: 227 KAI 229
            A+
Sbjct: 212 WAV 214


>gi|222106444|ref|YP_002547235.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737623|gb|ACM38519.1| two component response regulator [Agrobacterium vitis S4]
          Length = 216

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTER 177
           V+ G           + L+     +++        +   +     R+S A      LT R
Sbjct: 96  VKAGASGYALKDVRRDTLLRMIRAVLDGQEFFDTGLVRRMLTRVSRTSPAEDAISQLTTR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQ    G T++EIA +L ++  TV  ++     KL   +R QA   A + G +
Sbjct: 156 EREILQEVARGATNKEIARRLSIAPGTVKVHVERIIAKLRVGDRTQAAVLAAQAGLV 212


>gi|222106434|ref|YP_002547225.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737613|gb|ACM38509.1| two component response regulator [Agrobacterium vitis S4]
          Length = 779

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 146 IIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           I+E   A          L + R    ++A   LT++E   L +  +G +++ IA   G+S
Sbjct: 686 IVEFVMAATPARAILRRLDRGRHSSLAAARTRLTQQELKILTMLAEGASNKLIARNSGIS 745

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  +L +   KL    R +AIA A   G++
Sbjct: 746 EPTVKFHLKNVYRKLGCSRRHEAIAAAKALGWV 778


>gi|167763338|ref|ZP_02435465.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC
           43183]
 gi|167698632|gb|EDS15211.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC
           43183]
          Length = 203

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 151 GACYQVITDFLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
             C  V    L    + ++    L     T  E S L+    G T++EIA +  LS HTV
Sbjct: 108 FICNHVSNLLLSGNNQSAAPHPTLQNALLTPAERSILKEIALGKTTKEIAAERNLSFHTV 167

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           N++  +   KL+  N  +A   A++ G +
Sbjct: 168 NSHRKNIFRKLNVNNAHEATKYAMKAGIV 196


>gi|149203886|ref|ZP_01880855.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149143003|gb|EDM31045.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 202

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCL 182
              ++G   F  + L   + V    H    +  T  DFLE  +  +     LT RET  L
Sbjct: 91  RALRSGAAGFLPKTLDPQSLVAAVHHMLLGETYTPLDFLETGESEAEGPVRLTPRETDVL 150

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
                G +++EIA  L +   TV  +L + + KL A NR  A   A   G 
Sbjct: 151 VGILHGKSNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTHAAMIARDMGL 201


>gi|126173037|ref|YP_001049186.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|153002219|ref|YP_001367900.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|160876940|ref|YP_001556256.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|125996242|gb|ABN60317.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
 gi|151366837|gb|ABS09837.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
 gi|160862462|gb|ABX50996.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315269144|gb|ADT95997.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 209

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE---AHGACYQVI 157
              +    +    +   V         ++              ++++E        ++VI
Sbjct: 69  LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVI 128

Query: 158 TDFLE--LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +D +E  L++ + +        +LT RE   L+   +G ++  I+E L +S  TV  ++ 
Sbjct: 129 SDEVEEYLYELKDATDEQEWISSLTPRELQILEQLAEGLSNRMISEHLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|327438849|dbj|BAK15214.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 217

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT +E   +Q  G GY++++IA  L +S +TV  ++     KL+  +R Q    A   G 
Sbjct: 149 LTTKEKEVMQKLGMGYSNKQIAHSLYISENTVKKHVSQVLSKLELGDRTQVALFANETGL 208

Query: 234 I 234
           +
Sbjct: 209 V 209


>gi|302540485|ref|ZP_07292827.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302458103|gb|EFL21196.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 215

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 13/152 (8%)

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-------EFLMLANEVIIE 148
                  +L   L   L     + F            +          +   L     + 
Sbjct: 57  PGAMPPEELCRELRELLPNAVIVIFSACSDASVLHSCLVAGANGCLLKDASELDVGAALR 116

Query: 149 AHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           A  A   V+   +      E+ K R+     LT+RE   L L   G ++ +IA++L LS 
Sbjct: 117 ALLAGQFVLDPRVAKQLAPEIIKPRTGGTVRLTDREQEVLTLLAHGCSNRKIAQQLCLSE 176

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  Y+     KLDA +R++A+ +    G +
Sbjct: 177 TTVKGYVTDLLQKLDASSRLEAVVRGCELGLV 208


>gi|227894641|ref|ZP_04012446.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863536|gb|EEJ70957.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 223

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +NL++ E   +Q  G G T++EIA+KL LS  TV  Y+      L   +R Q    A++ 
Sbjct: 155 KNLSKSEWQVIQQVGLGRTNKEIAQKLFLSEGTVRNYISKILSCLQLRDRTQLAIWAVQK 214

Query: 232 GYI 234
           G I
Sbjct: 215 GVI 217


>gi|223935142|ref|ZP_03627060.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896026|gb|EEF62469.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLTERE   LQL  +G  +++IA +LG+S+ TV  +      KL+  +       AI  G
Sbjct: 155 NLTEREAEVLQLIAEGQANKQIASELGISIKTVEKHRQQVMNKLNIHDVAGLTRYAISKG 214

Query: 233 YI 234
            I
Sbjct: 215 VI 216


>gi|330821495|ref|YP_004350357.1| Response regulator, NarL-family protein [Burkholderia gladioli
           BSR3]
 gi|327373490|gb|AEA64845.1| Response regulator, NarL-family protein [Burkholderia gladioli
           BSR3]
          Length = 236

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  +  +    L+ RE   L +   G T+ EI+E L LS  TV  ++ +   KL   +R 
Sbjct: 164 LPSRNGAPPVRLSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRT 223

Query: 223 QAIAKAIRFGYI 234
           QA+ +A   G +
Sbjct: 224 QAVFEARAHGLL 235


>gi|94312507|ref|YP_585717.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93356359|gb|ABF10448.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 228

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GYV+  +    L   +     G  +        +  +  S    LT RE   L  
Sbjct: 114 RAGARGYVLKDAPADELLAAIQAVLAGRVFYSARIARGMAAQAVSPLDALTPRERDILHG 173

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RFGY 233
            G G  +++IA +LG+SV TV  +  +   KL    R + +  A+ + G 
Sbjct: 174 IGRGQANKDIAVQLGVSVRTVETHRLNLKRKLGIEGRAELVKYAVQQLGL 223


>gi|327406023|ref|YP_004346861.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327321531|gb|AEA46023.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 205

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 144 EVIIEAH----GACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           E I+E H        ++    L    K  +   + +++RE   L L   GY  +EIA+KL
Sbjct: 113 EAILELHEGGSPMSPKIARKVLQSFNKAENPVLQLISKREREVLDLLSKGYLYKEIADKL 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +++ TV  +L     KL   N+ +A+ K
Sbjct: 173 NITLSTVKRHLNHIYEKLQVQNKTEAVNK 201


>gi|327254678|gb|EGE66294.1| transcriptional regulatory protein uhpA [Escherichia coli STEC_7v]
          Length = 205

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147
           I      E+   L  RL      F  I   +          +       L      E ++
Sbjct: 49  IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 108

Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +A        H  C   I   L    + + A   LT RE     L   G + +EIA KL 
Sbjct: 109 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 167

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV+ +  +   KL+  + I+ +  A+    +
Sbjct: 168 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 202


>gi|269148498|gb|ACZ28637.1| two component transcriptional regulator LuxR family [uncultured
           organism]
          Length = 203

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 137 EFLMLANEVIIEAHGACYQVI-----TDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           +F+    E  +        ++         E           LT RE   +Q   DG ++
Sbjct: 101 DFIEKPFEDEVLLESIHDAIVLDAKNRQLAEREADIRRRCERLTPREKEVMQHIADGKSN 160

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           +EIA  L LS  TV  +      K++  +  + +  A+
Sbjct: 161 KEIAALLELSHRTVEVHRARLMEKMEVKSLAELVPMAL 198


>gi|302538423|ref|ZP_07290765.1| response regulator [Streptomyces sp. C]
 gi|302447318|gb|EFL19134.1| response regulator [Streptomyces sp. C]
          Length = 223

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           E      +++         +     +LT RE   L+L   G+ +  IA +L LS  TV  
Sbjct: 135 EIAARLSELLAGGRRRDAGQLFP--SLTSREVEVLELIARGHDNRRIARELVLSEKTVRN 192

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++     KL   +R +A+A+A   G 
Sbjct: 193 HITHVFEKLQVTSRAEAVARARDAGL 218


>gi|284045220|ref|YP_003395560.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949441|gb|ADB52185.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 223

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193
             + ++             + +  D               LT RE   L     G T+ E
Sbjct: 121 GGDAVVAPRVTRALLDTFAHHLPADAAAPVPPHEHPRLSELTAREHEVLLELAAGRTNAE 180

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IAE+L LS  TV  ++G    KL   +R+QA+  A + G +
Sbjct: 181 IAERLVLSEATVKTHVGRILGKLALRDRVQAVILAYQIGLV 221


>gi|255692220|ref|ZP_05415895.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
 gi|260622084|gb|EEX44955.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
          Length = 219

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+ E + L+    G T++EIA +  LS HT+N++  +   KL   N  +A   A+R G 
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 234 I 234
           +
Sbjct: 212 V 212


>gi|237799774|ref|ZP_04588235.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022629|gb|EGI02686.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 534

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--------LFKKRSSAARN 173
           +            T                   +V    LE        L  + +  +  
Sbjct: 413 LHAAAGGALLPFRTLLGEHAQWLHEQLLQAPHCKVRNALLEKFPACFIPLTPEPAHGSDC 472

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R QA+A+A   G 
Sbjct: 473 LSVRELGVLQLIAKGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 532

Query: 234 I 234
           +
Sbjct: 533 L 533


>gi|228918188|ref|ZP_04081692.1| Response regulator receiver [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841468|gb|EEM86607.1| Response regulator receiver [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 592

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQVITDFLE---LFKKRSSAARN 173
           +R G          S  L  +  ++        H   +++  D  E   +  +       
Sbjct: 471 IRNGADGYLLKSIDSRELAESIRLVYRGGTMINHDLFHRMWEDKEETGLVESRLDGIEYG 530

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+L   G   + IA  L LS  TV  Y  +   KL   NR +A+ KA   G 
Sbjct: 531 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDKGL 590

Query: 234 I 234
           +
Sbjct: 591 L 591


>gi|170766690|ref|ZP_02901143.1| transcriptional regulator, LuxR family [Escherichia albertii
           TW07627]
 gi|170124128|gb|EDS93059.1| transcriptional regulator, LuxR family [Escherichia albertii
           TW07627]
          Length = 200

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K     ++L+ R+   L +   G +++EI   L +S  TV A+L S   +L+  NR QA
Sbjct: 133 EKDMKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQA 192

Query: 225 IAK 227
              
Sbjct: 193 AMM 195


>gi|200387363|ref|ZP_03213975.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604461|gb|EDZ03006.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 200

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195


>gi|167573291|ref|ZP_02366165.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 205

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARNLTE 176
           +R G      + + S   ++     + A          +         +  +     LT 
Sbjct: 82  IRFGASGY-LLKWCSPDGIVQAVRRVMAGRVHIDPSLDEARVASAAGGRTLAPPVDKLTR 140

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   L+L  DG  + EIA  L +S  TV+ +      KL A N    I  A R+GY
Sbjct: 141 REKQILKLIADGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 197


>gi|152981542|ref|YP_001354963.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281619|gb|ABR90029.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 320

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 18/126 (14%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--------ACYQVITDFLELFKKRSSAARN---- 173
              +GYV+  ++ L +    +++ H            +V+    +  K   + +      
Sbjct: 187 AGASGYVLKDADRLDIVR-ALLDLHAGGSPISPTIARKVLGRVRDGKKAPDAVSDASGAE 245

Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE++ L L   G +  E+A +L LSV T+  ++ +   KL   +R +A+ +A
Sbjct: 246 TEQVALTKRESTILDLIARGDSYGEVARQLSLSVGTIQTHIKNIYDKLSVHSRGEAVYEA 305

Query: 229 IRFGYI 234
            R G +
Sbjct: 306 NRRGLL 311


>gi|1066155|dbj|BAA09943.1| ESA36 [Streptomyces thermoviolaceus]
          Length = 334

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 76/228 (33%), Gaps = 15/228 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             ++   L+ +  RL  +    +           A      ++ +      + D  +   
Sbjct: 118 DSEQLIGLEAIRVRLAELARSARVE-----VATFAPGGAHDEEDLAASREPNADLLERGV 172

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
            +   Y D    H    L  + W     +   +      + +   +        P+    
Sbjct: 173 RMRTVYLDSVRNHP-PTLQHVRW---LHQHGGQVRTVPDLPIRMVIFDRKQAVLPIDTAD 228

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
            + G V+            +         V    + L       A+++  +E + L++  
Sbjct: 229 ARAGGVVCA------ERVTVAALCALFESVWQTAVPLGTVPKCGAKDMPPQERAVLKMLA 282

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            GYT E IA++LG+S  T      S   +LDA +R +A   A++ G++
Sbjct: 283 QGYTDEAIAKRLGVSPRTARRIAASLMERLDARSRFEAACYAVQDGWL 330


>gi|85702824|ref|ZP_01033928.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
 gi|85671752|gb|EAQ26609.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
          Length = 202

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSAARNLTERETSC 181
           +     + + FL    +         + ++       DFLE     +    +LT RET  
Sbjct: 90  RRALRSWAAGFLPKTLDPQSLVAAVHHMLLGETYTPLDFLESGDTEAEGKVHLTPRETDV 149

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L    DG +++EIA  L +   TV  +L + + KL A NR QA   A   G 
Sbjct: 150 LVGVLDGKSNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTQAAMIARDMGL 201


>gi|298251729|ref|ZP_06975532.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546321|gb|EFH80189.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
              AG    +     +             +   I        +++    + F    S ++
Sbjct: 100 GLRAGACGYLLKDTDRETLFHAIRT---ASRGDIFLQPEVMARILVRTTDAFHPTPSRSQ 156

Query: 173 N-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LTERE   L+    G  S+EIA +LG+S+ TV ++L S   KL   +R  A+A 
Sbjct: 157 AEGESELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAV 216

Query: 228 AIRFGYI 234
            I+ G +
Sbjct: 217 GIKRGLL 223


>gi|260590788|ref|ZP_05856246.1| transcriptional regulator [Prevotella veroralis F0319]
 gi|260537274|gb|EEX19891.1| transcriptional regulator [Prevotella veroralis F0319]
          Length = 217

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 33/85 (38%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H  C       L            LT+ E   L+    G  + EIAEK   S HTVN + 
Sbjct: 126 HYLCQHAANMLLAPVAIPEKERVRLTKTEIEVLKDIALGMKTREIAEKRISSFHTVNTHR 185

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   K+   N  +A   AIR G +
Sbjct: 186 KNIFRKIGVNNAHEATRYAIRTGLV 210


>gi|254777627|ref|ZP_05219143.1| hypothetical protein MaviaA2_23561 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 218

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKK-RSSA 170
                L     G+V+  S    L   V   A            +V+T + +     R +A
Sbjct: 92  LLSAALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPRGAA 151

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   L L G G ++ EIA++L +S  TV +++G    KLD  +R  AI  A  
Sbjct: 152 IAELTTRELDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYD 211

Query: 231 FGYI 234
            G +
Sbjct: 212 NGIV 215


>gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9902]
 gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9902]
          Length = 245

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F       + +       ++     L   +   A + T RE S LQL  +G  ++EI
Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEAL-PSKDPVAHSFTPREASVLQLVAEGLMNKEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+     K    +R + +  A+    +
Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|16766892|ref|NP_462507.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167549170|ref|ZP_02342929.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990827|ref|ZP_02571926.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168465108|ref|ZP_02699000.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197265905|ref|ZP_03165979.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16422168|gb|AAL22466.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195632478|gb|EDX50962.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197244160|gb|EDY26780.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205325818|gb|EDZ13657.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330641|gb|EDZ17405.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248759|emb|CBG26609.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995841|gb|ACY90726.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160145|emb|CBW19665.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914630|dbj|BAJ38604.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226657|gb|EFX51707.1| Putative regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323131966|gb|ADX19396.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990457|gb|AEF09440.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 200

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195


>gi|332307927|ref|YP_004435778.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175256|gb|AEE24510.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 916

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L L  +G ++ EIA++L ++ +TV  ++ +   KL   NR++ I  AI  G +
Sbjct: 857 TKRELEILTLVVEGASNTEIADRLFVTANTVKFHMKNLYSKLAVNNRVKLITTAIHLGLV 916


>gi|327194435|gb|EGE61295.1| two-component nodulation response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 208

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTE 176
            P+ +   K G + F ++   L  + +++A  A  +        + L  +  S   +LT 
Sbjct: 86  IPISVRAMKAGAIEFLTK--PLREQELLDAAYAGIERDCARRQEVALIAELRSRYDSLTP 143

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   + L   G  +++IA ++GLS  TV  + G    K+ A + +  +  A   G 
Sbjct: 144 REREIMNLVVAGSVNKQIAAQVGLSEVTVKVHRGHVMQKMQARSLVDLVRMADGLGL 200


>gi|307328094|ref|ZP_07607274.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886213|gb|EFN17219.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 238

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERETSCL 182
           L     GY++  +    L   V   + G            L + R      L++RE   L
Sbjct: 126 LAAGATGYLLKDTPREELTRAVRSASSGQSVLSPAVTGRVLGQVRKPTQGPLSDRELQVL 185

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +L  DG T+ + A  L +S  TV  +L     KL   +R  A+++A +   
Sbjct: 186 RLIADGATNRQAAAALFISQATVKTHLLHVYEKLGVKDRAAAVSEAHKRHL 236


>gi|72162216|ref|YP_289873.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71915948|gb|AAZ55850.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 236

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             ++    LT RE   L+L G G T+ EIA +L L   TV  ++G    KL   +R+QA+
Sbjct: 153 GPAAEVARLTRREREVLRLLGRGLTNAEIARQLVLGETTVKTHVGRVLAKLGLRDRVQAV 212

Query: 226 AKAIRFGYI 234
                 G +
Sbjct: 213 VYTYEHGLV 221


>gi|56962510|ref|YP_174236.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908748|dbj|BAD63275.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 199

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++  S    LA  +     G           ++   +     LTERE   L+L
Sbjct: 93  RAGVEGYLLKDSPSEDLAAAIRTIMDGRRVYAPELVDMVYHNETP----LTEREEQVLKL 148

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G T+++IA++L ++  TV  Y+     KL+  NRI+AI+   + G++
Sbjct: 149 IAEGRTTQQIADELKITNGTVRNYVSVILDKLEVGNRIEAISYYQKKGWL 198


>gi|318041781|ref|ZP_07973737.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 228

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 39/91 (42%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           E  + A    +   +  L   +    +   LT RE   L L   G T  EIAE+L +S  
Sbjct: 136 EAAVMAVMGHHSYRSPSLRSGQLPYLSCPRLTPREYEVLDLLASGLTDREIAEQLVVSEE 195

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T   Y       L+  NR+QA+ K +R G +
Sbjct: 196 TARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226


>gi|300782102|ref|YP_003762393.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791616|gb|ADJ41991.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 208

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 157 ITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           ++    L K R      L   TERE   L+L G G ++ EIAE+L L+  TV  Y+ S  
Sbjct: 129 VSTARVLDKMRHPPTDELATLTERERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVL 188

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL    R QA A  +R 
Sbjct: 189 AKLGMQRRTQAAAWIVRR 206


>gi|297157878|gb|ADI07590.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 222

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 5/136 (3%)

Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVIT 158
             +         AG + F V+    +          T + ++             + +  
Sbjct: 84  FDLDEYAHAGLRAGASGFLVKDARPEELLAGIRAVATGDAVVAPALTRRLLDRYAHHLPA 143

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                          LT RE   L   G G+T+ EIA++L ++  TV  ++G    K+  
Sbjct: 144 PDASTADGTDPRLAALTGREREVLTAIGRGWTNGEIAQRLVVAESTVKTHVGRILAKIGG 203

Query: 219 VNRIQAIAKAIRFGYI 234
            +R+QA+  A     +
Sbjct: 204 RDRVQAVIFAYDTRLV 219


>gi|295838096|ref|ZP_06825029.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295826844|gb|EFG65089.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 219

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 36/110 (32%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++       L   +   A G           +     +    LT RE   L  
Sbjct: 109 NAGATGYLLKAERPEELFAAIHAAARGRTALSPPVAHRVLAHLRAPRPELTPRERDILAQ 168

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + +IA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 169 LSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 218


>gi|260175087|ref|ZP_05761499.1| LuxR family transcriptional regulator [Bacteroides sp. D2]
 gi|293371808|ref|ZP_06618218.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|315923316|ref|ZP_07919556.1| transcriptional regulator [Bacteroides sp. D2]
 gi|292633260|gb|EFF51831.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|313697191|gb|EFS34026.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 257

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L+L   G  S+EIA+KL +S+HTVN +  +   KL   N I+AI      G +
Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256


>gi|258626995|ref|ZP_05721793.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM603]
 gi|258580669|gb|EEW05620.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM603]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 38/78 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H +   +          ++ A  +LT RE   L+    G ++ +IAE L +S  TV ++L
Sbjct: 131 HVSSQLLHYYRYAFQTHQTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHL 190

Query: 210 GSATVKLDAVNRIQAIAK 227
                KL+  NR++AIA 
Sbjct: 191 YQIFKKLNVKNRVKAIAW 208


>gi|237745463|ref|ZP_04575943.1| two-component system response regulator [Oxalobacter formigenes
           HOxBLS]
 gi|229376814|gb|EEO26905.1| two-component system response regulator [Oxalobacter formigenes
           HOxBLS]
          Length = 219

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    +    +LT RE    +L   G  ++ IA KL +S  TV A+L S   KL   +R+
Sbjct: 150 VAAGWAERLNSLTRREHEIARLVATGENNKNIARKLDISERTVKAHLTSIFDKLQIRDRL 209

Query: 223 QAIAK 227
           Q +  
Sbjct: 210 QLVVY 214


>gi|159037739|ref|YP_001536992.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916574|gb|ABV98001.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 240

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKR----SSAAR 172
           VR G +       +   L++A   +   H         +++               + A 
Sbjct: 97  VRAGANGVLAEDASKAELLIAVRAVASGHAMLGPPVARRMLDWLRSSDDPVGVPYPAVAN 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLT RE   L L   G +++EIA +L +SV TV  +L     KL   +R Q +  A + G
Sbjct: 157 NLTGREREILLLTARGLSADEIAGRLFISVATVRTHLYRLRCKLQLKDRAQLVTFAYQTG 216

Query: 233 Y 233
            
Sbjct: 217 L 217


>gi|15640423|ref|NP_230050.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587593|ref|ZP_01677358.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121727264|ref|ZP_01680423.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147675776|ref|YP_001218664.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153818257|ref|ZP_01970924.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153822263|ref|ZP_01974930.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|227080607|ref|YP_002809158.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229507036|ref|ZP_04396542.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286]
 gi|229508809|ref|ZP_04398301.1| hypothetical protein VCE_000215 [Vibrio cholerae B33]
 gi|229519797|ref|ZP_04409240.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9]
 gi|229530241|ref|ZP_04419629.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)]
 gi|229606322|ref|YP_002876970.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236]
 gi|254850628|ref|ZP_05239978.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255743782|ref|ZP_05417739.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101]
 gi|262153605|ref|ZP_06028733.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE
           91/1]
 gi|262167639|ref|ZP_06035343.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27]
 gi|262191516|ref|ZP_06049700.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT
           5369-93]
 gi|297580534|ref|ZP_06942460.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298501071|ref|ZP_07010872.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9654817|gb|AAF93569.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548166|gb|EAX58238.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121630383|gb|EAX62778.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|126511216|gb|EAZ73810.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126520219|gb|EAZ77442.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146317659|gb|ABQ22198.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|227008495|gb|ACP04707.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227012251|gb|ACP08461.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229332014|gb|EEN97502.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)]
 gi|229344486|gb|EEO09461.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9]
 gi|229354212|gb|EEO19143.1| hypothetical protein VCE_000215 [Vibrio cholerae B33]
 gi|229355781|gb|EEO20701.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286]
 gi|229368977|gb|ACQ59400.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236]
 gi|254846333|gb|EET24747.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255738531|gb|EET93919.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101]
 gi|262023975|gb|EEY42672.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27]
 gi|262030632|gb|EEY49268.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE
           91/1]
 gi|262032614|gb|EEY51168.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT
           5369-93]
 gi|297534950|gb|EFH73785.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297540319|gb|EFH76379.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
           RL    L   G    +       G++       ++  +  +  H +   +          
Sbjct: 89  RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPRHVSSQLLHYYRYAFQSH 147

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +  A  +LT RE   L+    G ++ +IAE L +S  TV ++L     KL+  NR++AIA
Sbjct: 148 QVQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207

Query: 227 K 227
            
Sbjct: 208 W 208


>gi|330466893|ref|YP_004404636.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328809864|gb|AEB44036.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 238

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              +A R+LT RE   L L   G ++ EIA  L L   TV +++     KL+  +R+QA+
Sbjct: 166 DPQAALRDLTPREREVLVLVAGGASNAEIATALHLGEATVKSHVSRVLAKLELRDRVQAV 225

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 226 VFAYEQGVV 234


>gi|325291416|ref|YP_004267597.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966817|gb|ADY57596.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 208

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           I         ++  L   KK +     ++ RE + L+L G+G ++ EI  +L +S  TV 
Sbjct: 122 IVLEREVATALSSMLREGKKTTPEQLAISPREFAILKLVGEGCSNREIGRELKISEGTVR 181

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231
            Y+ +   KL   +R Q     I+ 
Sbjct: 182 NYVTALLEKLGFRDRTQLAIFYIKN 206


>gi|296123119|ref|YP_003630897.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296015459|gb|ADG68698.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 284

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                   +    LT R+   L+   +G + +EIA  + LS  +V+++      KL   +
Sbjct: 209 RRFSLPADTPLTGLTGRQLEVLRHLANGASVKEIARLMHLSQKSVDSHKYRIMHKLGIHD 268

Query: 221 RIQAIAKAIRFGY 233
           R++    AIR G 
Sbjct: 269 RVELARFAIREGL 281


>gi|291299247|ref|YP_003510525.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568467|gb|ADD41432.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 188

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++ + +   + +S+    L+ERE   + L   G T+ EIAEKL +S  T   +L +   
Sbjct: 106 RLLREMMRP-EPKSADTSVLSERELEVVALVAQGLTNAEIAEKLFISAGTAKNHLANVQA 164

Query: 215 KLDAVNRIQAIAKAIRFG 232
           KL   NR+   A A   G
Sbjct: 165 KLGVGNRVGIAAWAWETG 182


>gi|167577459|ref|ZP_02370333.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V+     +  + +    A  A  + +          +S    LT RE   L+L  DG  +
Sbjct: 115 VMAGRVHIDPSLDEARVASAAGGRAL----------ASPVDELTRREKQVLKLIADGMRN 164

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            EIA  L +S  TV+ +      KL A N    I  A R+GY
Sbjct: 165 REIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206


>gi|284042733|ref|YP_003393073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946954|gb|ADB49698.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 226

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 151 GACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
               +V    +  F + S AA        L+ RE   L     G ++ EIA  L +   T
Sbjct: 127 LIAPEVTRRLIARFAEVSPAAERATELEELSPREHEVLLQIARGRSNAEIAAALVVEEST 186

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +++     KL   +R+QA+  A   G +
Sbjct: 187 IKSHVSRLLSKLGCSSRVQAVILAYEVGLV 216


>gi|316935769|ref|YP_004110751.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603483|gb|ADU46018.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 203

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               +  S+F+    +      +IE      Q       + +  +   ++L+ RE   + 
Sbjct: 91  EAMKLGASDFIEKPFDDDRLIGLIELALKQAQEGARSEAVTQDIALRIQSLSPRERQVMD 150

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G +++ IA +  +S  T+  Y  +   K+ A +  + +  A+R G I
Sbjct: 151 GLVAGMSNKVIAREFDISPRTIEVYRANVMTKMQASSLSELVRMAMRGGVI 201


>gi|197285381|ref|YP_002151253.1| response regulator [Proteus mirabilis HI4320]
 gi|227355815|ref|ZP_03840208.1| response regulator [Proteus mirabilis ATCC 29906]
 gi|194682868|emb|CAR43196.1| response regulator [Proteus mirabilis HI4320]
 gi|227164134|gb|EEI49031.1| response regulator [Proteus mirabilis ATCC 29906]
          Length = 219

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            +   L   +   +   +L+ERE   + +   G    +IA++L +S  TVN+Y      K
Sbjct: 129 AMDIALTKVQADLNPLHHLSERELQIMSMIIRGKKIAQIAQELNISTKTVNSYRYRMFSK 188

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L     ++    A+R+G I
Sbjct: 189 LKISGDVELTHIAVRYGLI 207


>gi|161616659|ref|YP_001590624.1| hypothetical protein SPAB_04476 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168232438|ref|ZP_02657496.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235205|ref|ZP_02660263.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241764|ref|ZP_02666696.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260660|ref|ZP_02682633.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168818573|ref|ZP_02830573.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194449703|ref|YP_002047634.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194468644|ref|ZP_03074628.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194737459|ref|YP_002116543.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250551|ref|YP_002148534.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204928537|ref|ZP_03219736.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|224585403|ref|YP_002639202.1| hypothetical protein SPC_3680 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238910366|ref|ZP_04654203.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|161366023|gb|ABX69791.1| hypothetical protein SPAB_04476 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408007|gb|ACF68226.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455008|gb|EDX43847.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712961|gb|ACF92182.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197214254|gb|ACH51651.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197291362|gb|EDY30714.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204321970|gb|EDZ07168.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205333300|gb|EDZ20064.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339085|gb|EDZ25849.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344401|gb|EDZ31165.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350320|gb|EDZ36951.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224469931|gb|ACN47761.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|320088025|emb|CBY97787.1| putative HTH-type transcriptional regulator yhjB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322614001|gb|EFY10937.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617893|gb|EFY14786.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625492|gb|EFY22318.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629957|gb|EFY26730.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632154|gb|EFY28905.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636496|gb|EFY33203.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643130|gb|EFY39704.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644649|gb|EFY41185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651327|gb|EFY47711.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652757|gb|EFY49096.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659058|gb|EFY55310.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663240|gb|EFY59444.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668726|gb|EFY64879.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674470|gb|EFY70563.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678323|gb|EFY74384.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682419|gb|EFY78440.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684133|gb|EFY80139.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192311|gb|EFZ77543.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196261|gb|EFZ81413.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201409|gb|EFZ86475.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206481|gb|EFZ91442.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212073|gb|EFZ96900.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216978|gb|EGA01701.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220343|gb|EGA04797.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224391|gb|EGA08680.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228320|gb|EGA12451.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233413|gb|EGA17506.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237126|gb|EGA21193.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243659|gb|EGA27675.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246097|gb|EGA30084.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250877|gb|EGA34755.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257630|gb|EGA41316.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261837|gb|EGA45404.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266106|gb|EGA49597.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268650|gb|EGA52117.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 200

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195


>gi|148245043|ref|YP_001219737.1| two-component system, nitrate/nitrite response regulator
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326870|dbj|BAF62013.1| two-component system, nitrate/nitrite response regulator
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 209

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           +      + + D L   +    +  +LT RE         GY+++ IA +LG+S  TV  
Sbjct: 125 DMRYILAKALRDELTDNE---PSFGSLTSREKEVACQVSSGYSNKVIARELGISDGTVKL 181

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ S   KL   +R++      + GY
Sbjct: 182 HVKSILKKLSLSSRVEVAVMVTQKGY 207


>gi|302559865|ref|ZP_07312207.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477483|gb|EFL40576.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 228

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 44/142 (30%), Gaps = 11/142 (7%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +         +            V               L  
Sbjct: 84  FDLDEYAYAGLRAGASGFLVKDAQPEELLSGIRSVASGDAVVAPSLTRRLLDAYARHLPT 143

Query: 164 FKKRS-----------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
               S           +    LTERE   L + G G+T+ EIA +L L+  TV  ++G  
Sbjct: 144 PGPDSDSDAPTAGHTDARLDALTEREREILTVVGRGWTNTEIATRLHLAESTVKTHVGRI 203

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             K  + +RIQA+  A     +
Sbjct: 204 LAKTGSRDRIQAVILAYDTKLV 225


>gi|167615608|ref|ZP_02384243.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257142156|ref|ZP_05590418.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 214

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V+     +  + +    A  A  + +          +S    LT RE   L+L  DG  +
Sbjct: 115 VMAGRVHIDPSLDEARVASAAGGRAL----------ASPVDELTRREKQVLKLIADGMRN 164

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            EIA  L +S  TV+ +      KL A N    I  A R+GY
Sbjct: 165 REIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206


>gi|144898601|emb|CAM75465.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 217

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT R+   L L G+G +++EIA  L L+  TV  ++ +    L+  NR +A+  A + G 
Sbjct: 153 LTPRQREVLGLLGEGKSNKEIARILELAEGTVKLHVTAILKALNVNNRTRAVVAAAQMGL 212


>gi|83716526|ref|YP_439048.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83650351|gb|ABC34415.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 223

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V+     +  + +    A  A  + +          +S    LT RE   L+L  DG  +
Sbjct: 124 VMAGRVHIDPSLDEARVASAAGGRAL----------ASPVDELTRREKQVLKLIADGMRN 173

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            EIA  L +S  TV+ +      KL A N    I  A R+GY
Sbjct: 174 REIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 215


>gi|54026123|ref|YP_120365.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54017631|dbj|BAD59001.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 285

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
             +      +         HG C ++      L  + S  A  L+ RE   L     G T
Sbjct: 184 AELRGLAGTVRDERTRERLHGVCARL---TRMLTGETSPTAPKLSRRELDVLSEVALGCT 240

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++E+A++L L   TV +YL +A  KLDA +R +A+  A R G +
Sbjct: 241 NQEVAQRLSLGPETVKSYLRNAMTKLDAHSRHEAVVTARRLGLL 284


>gi|324997306|ref|ZP_08118418.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 226

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 19/162 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +          ++  R          +A  V         VI +         ++   + 
Sbjct: 65  LDVHLPGGGGAEILRRTRAAGTESVFLALSVSDAAEDVISVIRSGARGYVTKTISGRDLA 124

Query: 148 EAHGA--------CYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSE 192
           +A             ++    L+ F  R  AA         LT+RE   L+L   GY  +
Sbjct: 125 DAVRRVRVGDAVFSPRLAGFVLDAFSDRPGAAPPVDPEVDQLTKRERDVLRLLARGYAYK 184

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L +SV TV  ++ S   K    NR +    A     +
Sbjct: 185 EIAGELFISVKTVETHVSSVLRKTQTSNRHELSRWASDRRLV 226


>gi|226363249|ref|YP_002781031.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226241738|dbj|BAH52086.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 276

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 40/99 (40%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    L   V   + G          +L  +    A +L+ RE   L L 
Sbjct: 97  AGAAGYLLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTRVRRPATSLSPREIQVLTLV 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             G ++ EI ++L LS  TV ++L     KL   +R  A
Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSA 195


>gi|213967183|ref|ZP_03395332.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301381082|ref|ZP_07229500.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060741|ref|ZP_07252282.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302133226|ref|ZP_07259216.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928025|gb|EEB61571.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 910

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   L+L   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 846 SDCLSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 905

Query: 231 FGYI 234
            G +
Sbjct: 906 LGLL 909


>gi|196234323|ref|ZP_03133152.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196221590|gb|EDY16131.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVII 147
                ++   Q +  +             V          I           +   +++ 
Sbjct: 59  DVRLPLQDGVQAARTIRNDHPQARIAMLTVSDAEEDILGAIDAGVVGYLPKSVEREQLLT 118

Query: 148 EAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
             H      +     +E   + ++   +LT+RET  L     G +++EI   LG++  TV
Sbjct: 119 AIHRLAEGGEYFAPEIEAKLRSTNRV-SLTKRETEVLTQIVKGRSNKEIGYDLGIAEPTV 177

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L     KL  ++R QA   A++ G +
Sbjct: 178 RLHLTHLFKKLHVMDRTQAAMVAVQRGLV 206


>gi|169630970|ref|YP_001704619.1| LuxR family transcriptional regulator [Mycobacterium abscessus ATCC
           19977]
 gi|169242937|emb|CAM63965.1| Probable transcriptional regulator, LuxR family [Mycobacterium
           abscessus]
          Length = 216

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  + ++   + A   +++        + + L       S    LT +E + L+L G+G 
Sbjct: 108 GMELISAVRTVGAGRSLLD--NRAAAALMNRLRAAADNPSPLAGLTAQERTLLELIGEGL 165

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           T+ +IAE++ L+  TV  Y+     KLD   R Q    A + 
Sbjct: 166 TNRQIAERMFLAEKTVKNYVSRLLTKLDLERRTQVAVLATKL 207


>gi|15966696|ref|NP_387049.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075968|emb|CAC47522.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
          Length = 237

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT RE   L L   G  ++ IA++LGLS +TV  ++ +   K++  NR +A ++  R 
Sbjct: 163 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRN 220


>gi|15595232|ref|NP_248724.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107099028|ref|ZP_01362946.1| hypothetical protein PaerPA_01000036 [Pseudomonas aeruginosa PACS2]
 gi|116053755|ref|YP_788190.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152985987|ref|YP_001345432.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218888780|ref|YP_002437644.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254237723|ref|ZP_04931046.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719]
 gi|254243146|ref|ZP_04936468.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192]
 gi|296386510|ref|ZP_06876009.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|13959718|sp|P24908|TRPO_PSEAE RecName: Full=Putative transcriptional regulator
 gi|9945855|gb|AAG03424.1|AE004443_2 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115588976|gb|ABJ14991.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169654|gb|EAZ55165.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719]
 gi|126196524|gb|EAZ60587.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192]
 gi|150961145|gb|ABR83170.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218769003|emb|CAW24761.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 207

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTER 177
              + G + F S+   L+  ++         +      L           +    +L++R
Sbjct: 91  RCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDR 150

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E + LQ   +G T++ IA++L LS  TV+ Y     +KL+A +    I  A R   I
Sbjct: 151 EMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI 207


>gi|282898699|ref|ZP_06306687.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196567|gb|EFA71476.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 216

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 34/232 (14%)

Query: 11  SSSLQELSPRL------HLIQNRIK---ARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           + +L  +   +        +Q  +    + +F ++    +     +     E+       
Sbjct: 2   AKTLHSIFEAIAHVETEQELQQALMETISLHFGVHHWGISF-REHQFLTGMEIPEIPAVC 60

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
            +   +         +         ++      +        +                P
Sbjct: 61  LEANPVGSY-----VVERHAPTHELLVLAPEDWKNFCTRHEHVM-------------TGP 102

Query: 122 VRLGFHKNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKRSSAAR----NLT 175
           +       G + F  +          + +    C  +      L  K +         LT
Sbjct: 103 IVCDGRLVGTLNFARDPGSPPFNNNDLADLSALCIHLSAKIATLQAKWNMVKPITECPLT 162

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            RE    +L   G T+ EIA +L +S +TV   L     KL    R + +AK
Sbjct: 163 ARELEIAKLVAQGLTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVAK 214


>gi|239943663|ref|ZP_04695600.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 183

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            GY+   +    L   V        +++    L   +  ++    LT RE   L+    G
Sbjct: 79  RGYLHKDASRAELRATVTQALADPTWRLAPRRLRSAEMGAAPT--LTAREIQVLEGMSHG 136

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EI  +L LS  TV  +      KL A +R  A+A   R+G +
Sbjct: 137 RSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 182


>gi|158315847|ref|YP_001508355.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111252|gb|ABW13449.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 216

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 32/69 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L        A   L +RE   LQL  DG T+ +I  +LGLS  TV  Y+ S   KL  
Sbjct: 141 ERLRDGPSEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGL 200

Query: 219 VNRIQAIAK 227
            +R QA   
Sbjct: 201 ASRTQAAVY 209


>gi|83312959|ref|YP_423223.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947800|dbj|BAE52664.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 225

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 40/82 (48%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              V+    E      SA   L+ RE   L+L  +GYT++++A  LG+SV TV+ +  + 
Sbjct: 143 AGLVVDGGEEGGLAAGSAVAPLSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENI 202

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL     +   A A+R G +
Sbjct: 203 MNKLGVRTPVALAAIALREGLV 224


>gi|331018080|gb|EGH98136.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 910

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   L+L   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 846 SDCLSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 905

Query: 231 FGYI 234
            G +
Sbjct: 906 LGLL 909


>gi|300705575|ref|YP_003747178.1| response regulator, luxr family [Ralstonia solanacearum CFBP2957]
 gi|299073239|emb|CBJ44598.1| putative response regulator, LuxR family [Ralstonia solanacearum
           CFBP2957]
          Length = 210

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182
                GYV+  +    L   +     G  +      + + ++  +      LT RE   L
Sbjct: 98  RAGARGYVLKDAPASELVEAIDAVLAGRPFYSTQLAMRMAEQAVAPTPVEALTPREHDIL 157

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
                G++++ IA++LGLSV TV ++  +   KL    + + +  A+  G
Sbjct: 158 DGIAQGWSNKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVEAG 207


>gi|295838240|ref|ZP_06825173.1| two component transcriptional regulatory protein devr [Streptomyces
           sp. SPB74]
 gi|295826930|gb|EDY45148.2| two component transcriptional regulatory protein devr [Streptomyces
           sp. SPB74]
          Length = 155

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERET 179
           R    +      T               G   +V+  F       +        LT+RE 
Sbjct: 39  RPPTPRALPSPATHGRRRAPGNSRRRRTGPAGRVMAHFARTGNTLQSSPEGLDRLTDRER 98

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             L   G+G +++EIA +L ++  TV +++     KL   +R+QA       G
Sbjct: 99  DVLDCLGEGLSNQEIAHRLYITEATVKSHVSHILAKLGVRSRVQAAILVQDHG 151


>gi|282865307|ref|ZP_06274359.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559780|gb|EFB65330.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 381

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   + L   G T+++IA    +S  TV  ++     KL+A +R +AIA   R 
Sbjct: 313 DELSEREREVMGLIASGMTNQQIAATCFISQKTVKNHINRIFAKLNAGSRGEAIALWHRL 372


>gi|332142663|ref|YP_004428401.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552685|gb|AEA99403.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 225

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT+RE +  +   DG  ++EIA+ L +SV+TV  ++ S   K D  NR++ I  
Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNRVELIKW 212


>gi|238787448|ref|ZP_04631246.1| hypothetical protein yfred0001_19670 [Yersinia frederiksenii ATCC
           33641]
 gi|238724235|gb|EEQ15877.1| hypothetical protein yfred0001_19670 [Yersinia frederiksenii ATCC
           33641]
          Length = 209

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  +  IA++L +S  TV  +  +   KLD     + I  + R G 
Sbjct: 149 LTPRERQVLKLITEGSCNRIIADQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|152966492|ref|YP_001362276.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361009|gb|ABS04012.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 242

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +  +    LT RE   +     G  + +I E+L +S  TV  ++  A  KL   +R Q +
Sbjct: 170 RLRARVELLTARERDVVVAVARGLDNTQIGEELFISPLTVKTHVSRAMTKLRVRDRAQLV 229

Query: 226 AKAIRFGY 233
           A A R G 
Sbjct: 230 AIAYRAGI 237


>gi|330961775|gb|EGH62035.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 910

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEA------HGACYQVITDFLELFKKRSSAAR 172
             PV  G     + +   E     +E +++A           ++         + +    
Sbjct: 788 CLPVAAGGALLPFRVLLGEHARWLHEQLLQAPPGTVRDALLEKLPPCTAPALPEPAHGND 847

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R QA+A+A   G
Sbjct: 848 CLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILG 907

Query: 233 YI 234
            +
Sbjct: 908 LL 909


>gi|298241311|ref|ZP_06965118.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554365|gb|EFH88229.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 214

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 17/133 (12%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAH------------GACYQVITDFL 161
           +   +          +              + ++ A                 ++I  F 
Sbjct: 81  LVVTMFEDDDSVFAAMRAGARGYLLKDADQDELLRAVKAVSRGEAIFSPAIAQRMIHYFS 140

Query: 162 ELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            L +  S+ A  +LTERE   L L   G ++  IA+   LS+ TV  ++ +   KL   +
Sbjct: 141 ALPQTASAIAFPDLTEREREILLLIAQGESNAAIAKHFTLSLKTVQNHVSNIFSKLQVAD 200

Query: 221 RIQAIAKAIRFGY 233
           R QAI +A   G 
Sbjct: 201 RAQAIVRARDAGL 213


>gi|298244378|ref|ZP_06968184.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551859|gb|EFH85724.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 212

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 153 CYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              V+   L    + +   +  +L+ ++   L+    G +S EIA+KL LS +T+  Y+ 
Sbjct: 129 AAAVLMTQLRRAPQTNPELSLESLSSQQLVILRFVAQGLSSREIAKKLYLSENTIKGYVQ 188

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               +L+  NR +A+  A++ G++
Sbjct: 189 EILHRLNVKNRTEAVMVAVKHGWL 212


>gi|296101648|ref|YP_003611794.1| two-component system, NarL family, response regulator, fimbrial Z
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056107|gb|ADF60845.1| two-component system, NarL family, response regulator, fimbrial Z
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 210

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            ++   L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  
Sbjct: 144 MASDMPLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKSNIYSKLGVQSIVELIDY 203

Query: 228 AIRFGYI 234
           A     +
Sbjct: 204 AKAHELL 210


>gi|288958809|ref|YP_003449150.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911117|dbj|BAI72606.1| two-component response regulator [Azospirillum sp. B510]
          Length = 226

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H A   V     ++  +  +  + L++RE   L+    G +++ IA  L ++  TV  +L
Sbjct: 130 HLAELLVSGRTEDVSAELPTRRKGLSQREVQILRCLLSGNSNKMIANHLNITEATVKVHL 189

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
            S   K++A NR QA   A+  G 
Sbjct: 190 KSLLRKINASNRTQAAIWALNNGI 213


>gi|254822986|ref|ZP_05227987.1| hypothetical protein MintA_23864 [Mycobacterium intracellulare ATCC
           13950]
          Length = 518

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A   V+    +  ++ +     LT RE   L L   G +++EIA  L +S  T   ++  
Sbjct: 431 AVEAVLHAAGQPAQRPNLRPDRLTPREVEVLCLVARGASNKEIAASLVISEKTARNHVER 490

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              K+   NRI A   A+R G +
Sbjct: 491 TYAKIGVSNRIGASMYALRHGLV 513


>gi|238060490|ref|ZP_04605199.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237882301|gb|EEP71129.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 226

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              + +    E   +       LT RE   + L   G +++EIAE++ LS  TV A++  
Sbjct: 136 LVARFLATPDEPAHQHPEQLGVLTAREREMVALVATGLSNQEIAERMFLSPFTVRAHVQR 195

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
           A  KL+A +R Q +  A + G 
Sbjct: 196 AMTKLEARDRAQLVVIAYQTGL 217


>gi|209517666|ref|ZP_03266503.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501841|gb|EEA01860.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 210

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 46/156 (29%), Gaps = 13/156 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       S   L  R+         +   +          +       L  +   E   
Sbjct: 53  LDMTMPGISGVALIRRVRAEYPSLPVLVLSIHDEAQVASRALRAGATGYLTKDSDPEVLL 112

Query: 152 ACYQVITDFLEL-------------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           A  + I D                  +        L++RE   LQ+   G +  EIA+  
Sbjct: 113 AAIRKIADGGRFIDPKLVDALVFDAPRGDVPPHEVLSDREFQVLQMLAAGRSINEIAQAC 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  T++ +      KL   N  + I  AIR G I
Sbjct: 173 SLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGMI 208


>gi|28868366|ref|NP_790985.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851603|gb|AAO54680.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 910

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   L+L   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 846 SDCLSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 905

Query: 231 FGYI 234
            G +
Sbjct: 906 LGLL 909


>gi|95928587|ref|ZP_01311334.1| two component transcriptional regulator, LuxR family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135377|gb|EAT17029.1| two component transcriptional regulator, LuxR family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 263

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 38/88 (43%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
            E + A  Q   D  E    + S  + LT+RE    +L  +G  + EI+E L +S  TV 
Sbjct: 160 AELNPAIIQFYLDHRENASDQLSEYQLLTDREKQVFRLLANGKQTHEISEILCISPKTVA 219

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  +   KL      +    AI+ G I
Sbjct: 220 KHRAAVKKKLSLNTTAEMAKYAIQIGVI 247


>gi|323496086|ref|ZP_08101146.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323318830|gb|EGA71781.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 214

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 152 ACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              Q++  +  + + + + A  +LT RE   L+    G ++ +IAE+  +S  TV ++L 
Sbjct: 131 VAAQLLYHYRNIVEVQSTPATVDLTTREIHILRSLMTGASNSQIAEEQFISEFTVKSHLY 190

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
               KL   NR+QA A A + 
Sbjct: 191 QIFKKLCVKNRVQASAWARQN 211


>gi|303242530|ref|ZP_07329009.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302589948|gb|EFL59717.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 214

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+A   L ERE   +QL  DG ++ +IAE+L L+  +V   + S   KLD  +R+Q   
Sbjct: 147 ESTALAKLNEREIKVIQLVVDGKSNNQIAEELFLTEGSVRNIVSSLLRKLDLKDRVQLAV 206

Query: 227 KAIRFGYI 234
            A+R   +
Sbjct: 207 FAVRNKLV 214


>gi|258652221|ref|YP_003201377.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555446|gb|ACV78388.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 219

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  + ++   + +   +++        +   +    +       LTE+E   L L G G 
Sbjct: 108 GMELVSAVRTVGSGRSLLDT--RAAAALMSKIRAEAQDPGPLAGLTEQERVVLDLIGQGM 165

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           T+ +I E++ L+  TV  Y+ S   KL    R Q    A   
Sbjct: 166 TNRQIGERMFLAEKTVKNYVSSVLAKLGMQRRTQVAVLATEL 207


>gi|196232652|ref|ZP_03131504.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223414|gb|EDY17932.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 5/135 (3%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
              +  VR          I          N            A+ +      A       
Sbjct: 89  HETEQFVREALAAGVRGYILKTDAGRDLANAVDALIRGETFFASRL-----AATIYAAEF 143

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                ++RS +   LT RE   LQL  +G  + ++ + L +SV T   +      KL   
Sbjct: 144 AGMGRRRRSKSQAGLTPREREILQLLAEGRKNRDVGKALNISVKTAETHRARIMAKLGID 203

Query: 220 NRIQAIAKAIRFGYI 234
           +    +  AIR G I
Sbjct: 204 SVADLVRYAIRNGLI 218


>gi|169349619|ref|ZP_02866557.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552]
 gi|169293694|gb|EDS75827.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552]
          Length = 227

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +++ E   +Q  G G++++EIA+KL LS  TV  YL S   KL+  +R Q    A++ 
Sbjct: 158 DEISKPEWKVIQQVGYGFSNKEIAQKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQT 217

Query: 232 G 232
           G
Sbjct: 218 G 218


>gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 227

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L+L   G+++ ++  +L LS  TV  Y+ S   K    NR + +  A++ G
Sbjct: 165 SLTPREQEVLELLTHGFSNADMGHQLHLSPRTVEKYVSSLLRKTATSNRAELVRFAMKHG 224

Query: 233 YI 234
            +
Sbjct: 225 LV 226


>gi|94499701|ref|ZP_01306238.1| two-component system regulatory protein [Oceanobacter sp. RED65]
 gi|94428455|gb|EAT13428.1| two-component system regulatory protein [Oceanobacter sp. RED65]
          Length = 211

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+  ET  L+L   GY++ EIA  +  +  TV   + S   KLD  +R QA+ +AI  G
Sbjct: 150 ELSTSETQVLRLVAAGYSNNEIASTVFKAQGTVRNQISSILEKLDVRDRTQAVMRAIELG 209

Query: 233 YI 234
            I
Sbjct: 210 LI 211


>gi|326773342|ref|ZP_08232625.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326636572|gb|EGE37475.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 255

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT RE + L L   G ++  I E+L ++  TV +++ +   K    NR++ + 
Sbjct: 185 PSGPYEALTGREDAVLALVCQGLSNASIGERLHVAESTVKSHVKTILGKTGCHNRVELVI 244

Query: 227 KAIRFGYI 234
            A+  G +
Sbjct: 245 YALTTGLV 252


>gi|269962474|ref|ZP_06176823.1| Transcriptional regulator [Vibrio harveyi 1DA3]
 gi|269832770|gb|EEZ86880.1| Transcriptional regulator [Vibrio harveyi 1DA3]
          Length = 211

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|261209952|ref|ZP_05924252.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|260841017|gb|EEX67549.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
          Length = 214

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 37/78 (47%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H +   +          ++    +LT RE   L+    G ++ +IAE L +S  TV ++L
Sbjct: 131 HVSNQLLHYYRYAFQTHQTQVTIDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHL 190

Query: 210 GSATVKLDAVNRIQAIAK 227
                KL+  NR++AIA 
Sbjct: 191 YQIFKKLNVKNRVKAIAW 208


>gi|237808386|ref|YP_002892826.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
 gi|237500647|gb|ACQ93240.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
          Length = 298

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           +   A  +++T      ++      NLT+RE+  L     G T+ EIA  L +S  TVN 
Sbjct: 213 DQLHALIRLVTPKKRGTEEDLQRELNLTKRESQVLYWLSFGKTNWEIATILEMSPRTVNK 272

Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231
           +L     KL+  NR  A + ++R 
Sbjct: 273 HLEQIYKKLNVDNRTAAASISLRL 296


>gi|153834921|ref|ZP_01987588.1| response regulator [Vibrio harveyi HY01]
 gi|156972525|ref|YP_001443432.1| transcriptional regulator LuxR [Vibrio harveyi ATCC BAA-1116]
 gi|148868647|gb|EDL67731.1| response regulator [Vibrio harveyi HY01]
 gi|156524119|gb|ABU69205.1| hypothetical protein VIBHAR_00157 [Vibrio harveyi ATCC BAA-1116]
          Length = 211

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|333026198|ref|ZP_08454262.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746050|gb|EGJ76491.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 205

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 36/110 (32%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GY++       L   +   A G           +     +    LT RE   L  
Sbjct: 95  NAGATGYLLKAERPEELFAAIHAAAQGRTALSPPVAHRVLAHLRAPRPELTPRERDILAQ 154

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + +IA  L +S  TV  +LG    KL    R  A+A A     +
Sbjct: 155 LSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 204


>gi|317128012|ref|YP_004094294.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472960|gb|ADU29563.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 203

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             LT RE    +L   G ++ EIAE+L +   TV   L     KLD  +R Q    
Sbjct: 142 DQLTPREKDIAELVAQGLSNREIAEQLYIGEGTVRNNLSIILEKLDLRDRTQLAIY 197


>gi|223041628|ref|ZP_03611826.1| transcriptional regulatory protein UhpA [Actinobacillus minor 202]
 gi|223017557|gb|EEF15970.1| transcriptional regulatory protein UhpA [Actinobacillus minor 202]
          Length = 201

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  + +S    LT+RE    +L   G+ ++EIA+KL LS  TV+ +  +A  KL+  N +
Sbjct: 131 VSSRHNSPIEQLTKREREICELLIQGFDAKEIADKLNLSFKTVHVHRANAMSKLNVKNNV 190

Query: 223 QAI 225
           +  
Sbjct: 191 ELA 193


>gi|184201310|ref|YP_001855517.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581540|dbj|BAG30011.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 270

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +++   LT RET  L     G ++EEIA +L +   TV  ++ +   K  A +R+ 
Sbjct: 198 ENGAAASPAGLTARETEVLTAMARGLSNEEIARELVVGRATVKTHVSNVLQKTGARDRVH 257

Query: 224 AIAKAIRFGY 233
           A+  A   G 
Sbjct: 258 AVIWAFEHGL 267


>gi|241204229|ref|YP_002975325.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858119|gb|ACS55786.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 207

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT RE   + L   G +++ I  +L L   TV  ++     KL A NR +A  +    
Sbjct: 148 SLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQILSKLGASNRTEAALQWRER 206


>gi|331669588|ref|ZP_08370434.1| putative 2-component transcriptional regulator [Escherichia coli
           TA271]
 gi|331063256|gb|EGI35169.1| putative 2-component transcriptional regulator [Escherichia coli
           TA271]
          Length = 148

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R S+   LT RE+  LQL  DG T++EIA  L LS   V  +  +   KLD  + I+ I 
Sbjct: 79  RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKKVETHRLNIMKKLDVHSGIELIK 138

Query: 227 KAIRFGYIC 235
            A+R G +C
Sbjct: 139 TALRMG-VC 146


>gi|291008395|ref|ZP_06566368.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 340

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           L      +  +   V     +  ++     F  +             +     + + ++ 
Sbjct: 214 LRSEGPLWPLLLTSVPHRDGRYIWIDEAGTFHRID----------LTRCAGATVLVAERE 263

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + A  +LT RE   + L   G ++ EIA+ L +S  TV+ ++     KL   +R +  A 
Sbjct: 264 TPAPYDLTVRELQIVTLLAVGASNPEIADALVVSRRTVSTHVEHILAKLAVASRAEVAAL 323

Query: 228 AIRFGY 233
           A R G 
Sbjct: 324 AAREGL 329


>gi|238763427|ref|ZP_04624390.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238763508|ref|ZP_04624470.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238698290|gb|EEP91045.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238698371|gb|EEP91125.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
          Length = 209

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      ES   L  RL   +  F  I   +             G   + ++   
Sbjct: 48  VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107

Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              E++                    L    ++      LT RE    QL  +G + + I
Sbjct: 108 PD-ELVQALRTVNGGGLYLCADALRALRHMPQQPQQLAVLTPREKEIFQLLINGISVKSI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L LS  TV+ +  +   KL+    ++ +  A++   +
Sbjct: 167 ADQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|238059474|ref|ZP_04604183.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881285|gb|EEP70113.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 204

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S  A  LT RE   L+ A +G   +EIA +L L+  TV  +L +   K  A NR++A+  
Sbjct: 138 SPPANPLTRREREVLREAAEGVPLKEIARRLFLAHGTVRNHLSAIMHKTGARNRMEAVRL 197

Query: 228 AIRFGYI 234
           A   G++
Sbjct: 198 AQHEGWL 204


>gi|300361177|ref|ZP_07057354.1| two component system response regulator [Lactobacillus gasseri
           JV-V03]
 gi|300353796|gb|EFJ69667.1| two component system response regulator [Lactobacillus gasseri
           JV-V03]
          Length = 227

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ E   +Q  G G +++EIA KL LS  TV  Y+     KLD  +R Q    A++ G
Sbjct: 161 SKSEWCVIQQVGLGLSNKEIAAKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQTG 218


>gi|284042697|ref|YP_003393037.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946918|gb|ADB49662.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL-ELFKKRSSAARNLTER 177
              +GYV+ T+    L                 A   ++ D+L             LT R
Sbjct: 102 AGASGYVLKTAADRDLVEAARAAMRGESFLYPAAITALVRDYLERASAGEDVPEDPLTPR 161

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  + +T+++IA +L ++  TV  +  +   KL   +R++    AIR G +
Sbjct: 162 EREVLKLIAEAHTNDQIALELQIARRTVERHRANILAKLHMRDRVELTRYAIRRGLV 218


>gi|271966129|ref|YP_003340325.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509304|gb|ACZ87582.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTE 176
               L     GY++  +    L   V   A G      ++ +  L+ F ++  A+   + 
Sbjct: 94  VSRALAAGVAGYLLKDAPREELQAAVRTAAAGGRILAQRITSQLLDGFGRKRRASP--SP 151

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+L   G  ++E+A  L +S  TV  +L     KL   NR  A+  A+    I
Sbjct: 152 RELEVLRLIARGAANKEVARALLISETTVKTHLKHVFAKLGVDNRAAAVVVAMEQRLI 209


>gi|284033583|ref|YP_003383514.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812876|gb|ADB34715.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 225

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +     L   ++      +LT RE   L     G ++ EIA    LS  TV  ++G
Sbjct: 138 RRLLEHFAGSLPDGEREVPDLADLTAREREVLVEVARGLSNTEIARLFTLSEATVKTHIG 197

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               K    +R+  +      G +
Sbjct: 198 RILAKTGLRDRVALVVLGYETGLV 221


>gi|261341125|ref|ZP_05968983.1| positive transcription regulator EvgA [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316417|gb|EFC55355.1| positive transcription regulator EvgA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 210

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  
Sbjct: 144 AAVDMPLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKSNIYSKLGVQSIVELIDY 203

Query: 228 AIRFGYI 234
           A     +
Sbjct: 204 AKAHELL 210


>gi|297197789|ref|ZP_06915186.1| two component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197716622|gb|EDY60656.1| two component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                  +   A   LTERE   + L G G ++EEIA +L +S  T   ++    VKL A
Sbjct: 140 AARSKEPEAEGALAGLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGA 199

Query: 219 VNRIQAIAKAIRFGYI 234
            +R Q +  A   G +
Sbjct: 200 RDRAQLVVLAYESGLV 215


>gi|149914298|ref|ZP_01902829.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149811817|gb|EDM71650.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 223

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +        LT RE   LQLA DG T++EIA++LG++   V   + +   KL A NR  A
Sbjct: 154 EPARPRNEALTHREKRILQLASDGGTNKEIAQELGITESQVKMVMRTLCAKLQAKNRTHA 213

Query: 225 IAKAIRFGYI 234
           + +A R   I
Sbjct: 214 VVRANRLDLI 223


>gi|25027179|ref|NP_737233.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259506684|ref|ZP_05749586.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|23492460|dbj|BAC17433.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259165729|gb|EEW50283.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
          Length = 230

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 48/179 (26%), Gaps = 37/179 (20%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +  R+    +    +A  V         +I           ++ E ++
Sbjct: 51  LDVHMPDGGGLAVIRRVLEAGVETIFLALSVSDAAEDVIAIIRAGARGYVTKSISGEELV 110

Query: 148 EAH------------GACYQVITDFLELFKKR---------------------SSAARNL 174
           EA                  V+  F     +                            L
Sbjct: 111 EAINRVNSGDAFFSPRLAGFVLDAFAAPDSRAGAGIVDAPEKDAAVEKGAVIDDPIVDAL 170

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           T RE   L+L   GYT +EI ++L +SV TV  +  +   K    NR      A     
Sbjct: 171 TRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQSNRHALTRWAHSRDL 229


>gi|212640042|ref|YP_002316562.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561522|gb|ACJ34577.1| DNA-binding response regulator, NarL family, with truncated
           N-terminal REC domain [Anoxybacillus flavithermus WK1]
          Length = 165

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L + E   LQ+  + +T+ +I+EKL +S  TV  +L S   KL A +R  AIA A
Sbjct: 99  PPLCKLNDTEIRILQMVSNDFTNRQISEKLNISKRTVERHLSSCFEKLGAHSRAGAIAAA 158

Query: 229 IRFGYI 234
           +R   I
Sbjct: 159 MRLKLI 164


>gi|297203494|ref|ZP_06920891.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714467|gb|EDY58501.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 236

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +   +I E            L+           +T+RE   L L   G ++ EI+ +L
Sbjct: 134 PAVTRRLIAEFCRRPEARPEGRLDGLASAPRGLDGVTDREREVLLLIAGGLSNTEISNRL 193

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  TV  ++G    KL+A +R Q +  A   G +
Sbjct: 194 HLSHGTVKTHVGRLLAKLEARDRAQLVIAAYESGLV 229


>gi|150249482|gb|ABR67760.1| CmnR [Saccharothrix mutabilis subsp. capreolus]
          Length = 237

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             + L    + A  +LTERE   L+  G G ++ EIA +  +S  TV +++     KL+ 
Sbjct: 146 QIIPLPDPSAPALLSLTEREGQVLRAIGQGRSNREIAREFEVSETTVKSHVSRVLAKLEL 205

Query: 219 VNRIQAIAKAIRFGYI 234
            +R+QA   A R G +
Sbjct: 206 RDRVQAALLAWRLGLV 221


>gi|15893532|ref|NP_346881.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023075|gb|AAK78221.1|AE007537_6 Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325507651|gb|ADZ19287.1| Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 208

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 32/55 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           NLTERE   L+  GDG +++EIA KL LS  TV  Y+ S   KL+  +R Q    
Sbjct: 149 NLTEREMEVLRNIGDGLSNKEIASKLYLSEGTVRNYITSLLEKLELRDRTQLAIF 203


>gi|113969064|ref|YP_732857.1| LuxR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883748|gb|ABI37800.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4]
          Length = 221

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL--GFHKNGYVIFT 135
              ++  +P++   +     +     L       L   + +   +R      +   ++ T
Sbjct: 56  AALDNKGIPLLASRLVPHVPV----ALYQVERNSLDQESAMLLGIRGLLFADQRMDLMLT 111

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGY 189
               M+A+E+  +             +L  +    A        LT RE + +Q    G 
Sbjct: 112 GLRKMVADELWYDRTLLSKMFRRVVQKLDGQNDMPADTVAMLQALTSRERTIIQFVSSGA 171

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            ++EIA +L +S HTV A++ S   K  + NR++ +  A
Sbjct: 172 RNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|329944904|ref|ZP_08292931.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529715|gb|EGF56611.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 240

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             R  A  +LT RE   L     G ++E IA  L ++  TV  ++     KL   +R QA
Sbjct: 150 DDRFRALADLTAREREVLARVARGLSNEAIAHDLCVAEGTVRVHVSRILGKLGLRDRAQA 209

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 210 VVLAYESGLV 219


>gi|229012429|ref|ZP_04169604.1| Two-component protein Kinase [Bacillus mycoides DSM 2048]
 gi|228748788|gb|EEL98638.1| Two-component protein Kinase [Bacillus mycoides DSM 2048]
          Length = 592

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 505 QGMSHKIFEKFDEQIETPQSKATAYELTTREIEILQLVAKGLRYTTIASRLYLSSGTVRN 564

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  SA  KL   N+ +A+ KA+  G I
Sbjct: 565 YASSAYTKLGVRNKEEAVQKALEIGVI 591


>gi|223934800|ref|ZP_03626720.1| transcriptional regulator, LuxR family [bacterium Ellin514]
 gi|223896755|gb|EEF63196.1| transcriptional regulator, LuxR family [bacterium Ellin514]
          Length = 122

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 35/63 (55%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +S A  L+ RE   L L   GY  +EIAE L +SV TVN Y+     KL   +R QA
Sbjct: 45  RPHASEADELSNREQEVLDLLARGYLYKEIAENLNISVATVNTYIRRVYEKLHVRSRAQA 104

Query: 225 IAK 227
           +AK
Sbjct: 105 VAK 107


>gi|223934694|ref|ZP_03626614.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896649|gb|EEF63090.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 229

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTERETSCLQLAGDGYTSEE 193
           +     V+        ++    LELF        SS   NLT+RE    +L G+G +++E
Sbjct: 123 MQAIRHVLSGQIFVSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEGLSTKE 182

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           IA  + +S  TV  +  +   KL      + I   +R
Sbjct: 183 IAANMHVSAKTVEVHRMNIKTKLGLKTAAELIRYTVR 219


>gi|152994993|ref|YP_001339828.1| response regulator receiver protein [Marinomonas sp. MWYL1]
 gi|150835917|gb|ABR69893.1| response regulator receiver protein [Marinomonas sp. MWYL1]
          Length = 304

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 160 FLELFKKRSSAARNL-------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            L L          L       T+RE+  L    +G T+ EIAE L +S  TVN +L   
Sbjct: 221 LLRLEDGDKPTGPALLKKELDLTDRESEVLHWIANGKTNREIAEILEMSPRTVNKHLEQI 280

Query: 213 TVKLDAVNRIQAIAKAIR 230
             KL   NR  A   A+R
Sbjct: 281 FPKLGVENRTSAAGVALR 298


>gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regulator protein [Herminiimonas
           arsenicoxydans]
 gi|133738764|emb|CAL61811.1| nitrate/nitrite response regulator protein [Herminiimonas
           arsenicoxydans]
          Length = 235

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L     G +++ IA  L ++  TV  ++ +   KL+  +R+QA   A+  
Sbjct: 167 DKLTPRERDILACLARGESNKLIARTLDVADSTVKIHVQNILKKLNLSSRVQAAIFAVGH 226

Query: 232 G 232
           G
Sbjct: 227 G 227


>gi|296132098|ref|YP_003639345.1| transcriptional regulator, LuxR family [Thermincola sp. JR]
 gi|296030676|gb|ADG81444.1| transcriptional regulator, LuxR family [Thermincola potens JR]
          Length = 285

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 43/131 (32%), Gaps = 12/131 (9%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAA-- 171
           + IA P+R         +  S          I       + I       L  K       
Sbjct: 154 SCIAAPLRGPGGDIIGYLDVSMDSEEELGHTIALVELAVKYIEKLFAEQLSDKTMPKTIT 213

Query: 172 --------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     L+ RE     L   G T+ EIA  +G+SV TV  Y      KL   N+I 
Sbjct: 214 SPESLSRFVTLSNRERQIFSLIAKGQTAGEIAGTIGISVTTVKTYRKRIYKKLGIKNKID 273

Query: 224 AIAKAIRFGYI 234
            + KA   GY+
Sbjct: 274 CLNKARELGYL 284


>gi|271963099|ref|YP_003337295.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270506274|gb|ACZ84552.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 916

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 7/152 (4%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
              +       +   + R               R  +     ++ + E +    E     
Sbjct: 765 AEAEWHRAHGRADVEAWRAVVEAFDVGFAYEAARSRWRLAEALLASGERVAALKEWERAV 824

Query: 150 HGACY-------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
             A           + +     +   +    LT RE   L L  +G  + EI E+L ++ 
Sbjct: 825 EVAASLGARPLSAALAELGRRARFAPAQPGLLTGREREVLALVAEGLPNREIGERLFIAQ 884

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV+ ++ +   KL   +R QA A A +   +
Sbjct: 885 KTVSVHVSNILGKLGVSSRTQAAAVARKDDLL 916


>gi|269954998|ref|YP_003324787.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303679|gb|ACZ29229.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 219

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + A   +++ H A  +V+       +       +LT +E   L L G G T+ +I  +
Sbjct: 120 RTVAAGGSMLDPH-AAERVMARMRAQARHDDDPLASLTPQEQRILSLIGQGMTNRQIGAE 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           L L+  TV  Y+ +   KL    R+Q    A + G
Sbjct: 179 LFLAEKTVKNYVSNLLAKLGMERRVQVAVLATKLG 213


>gi|226314223|ref|YP_002774119.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226097173|dbj|BAH45615.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 858

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K+++     LT +E   L +  +G +++ IA++LG ++ TV  YL     KL   NR 
Sbjct: 781 MEKRKAPLIEPLTGKEMIILSMLAEGASNKMIADELGNTLGTVKVYLHRIYGKLGVTNRT 840

Query: 223 QAIAKAIRFGYI 234
           QA+ KA     +
Sbjct: 841 QALLKAQEISLL 852


>gi|218692578|ref|YP_002400790.1| putative response regulator [Escherichia coli ED1a]
 gi|218430142|emb|CAR11000.1| putative response regulator similar to uhpA; hexosephosphate
           transport [Escherichia coli ED1a]
          Length = 209

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147
           I      E+   L  RL      F  I   +          +       L      E ++
Sbjct: 53  IDIAMPDENGLSLVKRLRAQKPQFRAIILSIYDTPTFVQSALDAGASGYLTKRCGPEELV 112

Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +A        H  C   I   L    + + A   LT RE     L   G + +EIA KL 
Sbjct: 113 QAVRSVGMGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV+ +  +   KL+  + I+ +  A+    +
Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALNHHLL 206


>gi|26990830|ref|NP_746255.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148546967|ref|YP_001267069.1| LuxR family transcriptional regulator [Pseudomonas putida F1]
 gi|24985838|gb|AAN69719.1|AE016608_5 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
 gi|148511025|gb|ABQ77885.1| regulatory protein, LuxR [Pseudomonas putida F1]
 gi|313498014|gb|ADR59380.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 82

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            +     +  + A   LT RE   L     G +S EI + L     TVN ++ +   K +
Sbjct: 3   DNARHSQQPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILECKESTVNFHVSNILRKFE 62

Query: 218 AVNRIQAIAKAIRFGYI 234
              R+ A+ KAIR+G +
Sbjct: 63  VPTRVAAVIKAIRYGML 79


>gi|311896508|dbj|BAJ28916.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 203

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEI 194
               +   +           T  L   + RS    AA  LT RE   L+    G ++ EI
Sbjct: 103 HKDASRAELRATVTQALADPTWRLAPRRLRSPDMGAAPTLTAREIQVLEGMSHGRSNAEI 162

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L LS  TV  +      KL A +R  A+A   R+G +
Sbjct: 163 GRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202


>gi|227505299|ref|ZP_03935348.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198097|gb|EEI78145.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 217

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 29/72 (40%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              +    A   LT RE   L+L   GYT  EI E+L +SV TV  +  +   K    NR
Sbjct: 145 APDESVDPAVDALTRRELEVLRLLARGYTYREIGERLFISVKTVETHASNILRKTQQSNR 204

Query: 222 IQAIAKAIRFGY 233
            Q    A     
Sbjct: 205 HQLTRWAASHDL 216


>gi|167765400|ref|ZP_02437513.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC
           43183]
 gi|167697028|gb|EDS13607.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC
           43183]
          Length = 256

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G +   S+   L        +    ++ + +     K       LT RE   LQL   G 
Sbjct: 156 GVMDIASDQRPLDGVKCTVLNLKTGELFSPYTSAEIKP-----ELTNREIEILQLIKQGL 210

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            S+EIA  LG+S+HTVN +  +   KL   N I+AI    + G I
Sbjct: 211 LSKEIAYTLGVSIHTVNIHRQNLLRKLGVQNSIEAINIGSKTGLI 255


>gi|163943040|ref|YP_001647924.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865237|gb|ABY46296.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 200

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 38/72 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NR
Sbjct: 128 ELMFGLWQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNR 187

Query: 222 IQAIAKAIRFGY 233
           I+AI  A   G+
Sbjct: 188 IEAITIAEEKGW 199


>gi|300791071|ref|YP_003771362.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800585|gb|ADJ50960.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             +  LT RE   ++ A  G T+ EI  +L +S+ TV  +L S   K+ A NR++  A A
Sbjct: 151 PPSEPLTARELDVVKAAARGLTNTEIGAELFMSLSTVKTHLASVQSKIGARNRVETAAWA 210

Query: 229 IRFGYI 234
            R G +
Sbjct: 211 WRSGVV 216


>gi|83312988|ref|YP_423252.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947829|dbj|BAE52693.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 290

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA  +LT R+   L L G G +++EIA  L L+  TV  ++ +    L+  NR +A+  A
Sbjct: 219 SAIASLTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAA 278

Query: 229 IRFGY 233
              G 
Sbjct: 279 SHLGL 283


>gi|28899640|ref|NP_799245.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840435|ref|ZP_01993102.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260361511|ref|ZP_05774558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260879130|ref|ZP_05891485.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895483|ref|ZP_05903979.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260903309|ref|ZP_05911704.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28807892|dbj|BAC61129.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149745902|gb|EDM57032.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308088067|gb|EFO37762.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308091599|gb|EFO41294.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308109554|gb|EFO47094.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308112848|gb|EFO50388.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|328472235|gb|EGF43105.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 209

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIM 203


>gi|21221661|ref|NP_627440.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|1293660|gb|AAB08053.1| AbsA2 [Streptomyces coelicolor]
 gi|4490635|emb|CAB38597.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 222

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 11/122 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARN--- 173
           L     G+++  S+   L + V   A            +++T+       RS  +     
Sbjct: 94  LDQGVAGFLLKASDPRDLISGVRAVASGGSCLSPLVARRLMTELRRAPSPRSEVSGERTT 153

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L + G G ++ EIA++L L   T+  Y+ +   +L+  NR+QA   A   G
Sbjct: 154 LLTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAG 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|325917865|ref|ZP_08180041.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535911|gb|EGD07731.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 210

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F+ +   +   +ERE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 135 RARYQFRDQQPPSETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 195 RDRTRAVLKAITLRVI 210


>gi|255523094|ref|ZP_05390066.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|255513209|gb|EET89477.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 242

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           LT RE         G +++EI EKL +S +TV  ++ +   K++  N+++ I
Sbjct: 184 LTNREKEIAGYICMGLSNKEIGEKLFISANTVKNHVYNIYKKVNVKNKVELI 235


>gi|148555884|ref|YP_001263466.1| response regulator receiver protein [Sphingomonas wittichii RW1]
 gi|148501074|gb|ABQ69328.1| response regulator receiver protein [Sphingomonas wittichii RW1]
          Length = 208

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L    DG  ++ IA +L +S  TV  Y  +   KL   +  +A+  A   
Sbjct: 141 DRLTPRERDVLLGLIDGKANKIIAYELDISPRTVEIYRANLMDKLGVRSVAEAVRIAFAA 200

Query: 232 GYI 234
           G +
Sbjct: 201 GLV 203


>gi|15895522|ref|NP_348871.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025256|gb|AAK80211.1|AE007726_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325509670|gb|ADZ21306.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 213

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LTERE    +L   G +++EI+E L +S  TV  Y+     KL    R Q +A 
Sbjct: 154 LTEREMEITKLVTSGKSNKEISETLFISEGTVKNYISKILKKLKLQRRTQLLAI 207


>gi|51891164|ref|YP_073855.1| two-component response regulator variant [Symbiobacterium
           thermophilum IAM 14863]
 gi|51854853|dbj|BAD39011.1| two-component response regulator variant [Symbiobacterium
           thermophilum IAM 14863]
          Length = 78

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +S    LT RE    +L  DGYTS+ IA  L +S  T + +  S   KL+     + + 
Sbjct: 2   ATSRYEELTPREQEVFRLLVDGYTSKAIARALYISPKTADKHRASIMRKLEVNTFPELVR 61

Query: 227 KAIRFGYI 234
            A+  G +
Sbjct: 62  YAVSIGLL 69


>gi|313106484|ref|ZP_07792714.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310879216|gb|EFQ37810.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 268

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 68/226 (30%), Gaps = 23/226 (10%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            + L++  +   N       +       ++   E H           +      D F   
Sbjct: 30  LILLLRQHLPFDNALAIFYPANGVPVALEEYDAEPHAGPASMLAY--LNGLYLLDPFYQA 87

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
              GL   +++  +         +  +      +    + F +++       +    + +
Sbjct: 88  CREGLASGLYRLEEIAPDHFRQSEYYLSYFHDNVLEDEVQFILQVPDRGALSLSLGMQRI 147

Query: 140 MLANE--VIIEAHGACYQVITDFLELFKKRSSAARN-------------------LTERE 178
               E  ++         ++    +   +R   A                     L+ERE
Sbjct: 148 FADEECGMLGLLSSWVLALMQQHWQQRSQRLLPAAPQEEMATQIRDALSHFGASVLSERE 207

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +L   GY+S+ +AE+L +S  T+  +      KLD  ++ + 
Sbjct: 208 LEIARLILRGYSSKAMAERLAISPETIKVHRRHLYAKLDISSQPEL 253


>gi|312200374|ref|YP_004020435.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231710|gb|ADP84565.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + A  +LT RE   L+L   G ++ EIA  L +   TV  +      KL   +RIQA+  
Sbjct: 148 TRALADLTPREREVLELMAQGLSNREIARHLVVEESTVRTHAKRVLAKLGLRDRIQAVIF 207

Query: 228 AIRFGY 233
           A   G 
Sbjct: 208 AYENGI 213


>gi|254693110|ref|ZP_05154938.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|261213346|ref|ZP_05927627.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260914953|gb|EEX81814.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 213

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   +  R LT ++T  L +  +G  +++IA +LG+S  TV A++ +   KL   +R QA
Sbjct: 140 ESLIARLRTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 199

Query: 225 IAKAIRFG 232
           +    R G
Sbjct: 200 VILLSRIG 207


>gi|206559746|ref|YP_002230510.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198035787|emb|CAR51678.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 265

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 68/246 (27%), Gaps = 29/246 (11%)

Query: 8   GKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
           G+   +L +       + LI+  +   ++    +      P+                  
Sbjct: 15  GRLIETLDQPGFWLSLIRLIEEYVAVDSWV--ALMFGDGRPQVFAECAYEGGGPDPLFRD 72

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
               +    D F           +++            +   R     +    + F V L
Sbjct: 73  YVQGLYLL-DPFYIANRDAPTSGLFRLSDVAPECFRDTEYYTRYFTHNVVEDEVQFNVVL 131

Query: 125 GFHKNGYVIFTSEFL-MLANEVIIEAHGACYQVITD--------FLELFKKRSSAAR--- 172
              +   +   S+      +  +++        +            E    R   A    
Sbjct: 132 DDTRTLCLSLGSKRRFSPEHVALLDLVRPWVAALMRQRFAYEPMLAEPAPSRRPGADAGN 191

Query: 173 -----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                       LT RE   ++L   G +++E+A KL +S  TV  +  +   KL   ++
Sbjct: 192 GFEHAMARLGTPLTARELDVIRLILSGRSNKEVASKLDISAETVKVHRRNIYAKLAINSQ 251

Query: 222 IQAIAK 227
            +  A 
Sbjct: 252 SELFAL 257


>gi|46201852|ref|ZP_00208275.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 238

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA   LT R+   L L G G +++EIA  L L+  TV  ++ +    L+  NR +A+  A
Sbjct: 167 SAIAALTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAA 226

Query: 229 IRFGY 233
              G 
Sbjct: 227 SHLGL 231


>gi|291300883|ref|YP_003512161.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570103|gb|ADD43068.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 427

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R +    L  RE   L     G  +  IAE+L +S +TV  ++G+   KL   +R +A  
Sbjct: 353 RPAPLPELNPRELDVLAKLAGGLRNRRIAEELHISENTVKFHVGNILQKLGVASRNEAAV 412

Query: 227 KAIRFGY 233
            A   G 
Sbjct: 413 LARDAGI 419


>gi|225175001|ref|ZP_03728998.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169641|gb|EEG78438.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 205

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L +K       LT RE   L+    G  +++IAE L +S HTV  ++G    KL+  +R
Sbjct: 132 ALEEKNEDKLSELTTREMEVLKFLSRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDR 191

Query: 222 IQAIAKAI 229
            QA    +
Sbjct: 192 TQAALYGV 199


>gi|196231768|ref|ZP_03130625.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224240|gb|EDY18753.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 216

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R +   +LT RE   ++   +G T++E+A+ LG+S+ T  ++  +   KL      + I 
Sbjct: 147 RPAPGNSLTSREREAVKFIAEGRTNKELADVLGVSLRTAESHRAAVMQKLGLKTIGELIR 206

Query: 227 KAIRFGYI 234
            A+R G I
Sbjct: 207 YALRNGII 214


>gi|52222873|gb|AAU34214.1| two component response regulator MppU [Streptomyces hygroscopicus]
          Length = 222

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE        +G T+ +IA +L +S  TV  ++ S   KL   NR+    +A   GY
Sbjct: 156 LTEREVEIAGKVAEGKTNSDIARELFISAGTVKTHVASIQRKLQVRNRVGVAVRAWELGY 215


>gi|51244367|ref|YP_064251.1| two-component system response regulator [Desulfotalea psychrophila
           LSv54]
 gi|50875404|emb|CAG35244.1| related to two-component system response regulator [Desulfotalea
           psychrophila LSv54]
          Length = 197

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            L++RE        +G +++EIA+K+ +S+ TV A+L S   K    NR++ 
Sbjct: 139 KLSKREQEVASCVAEGMSNQEIADKMYVSLRTVKAHLSSIYEKTGLRNRLEL 190


>gi|307325089|ref|ZP_07604293.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889235|gb|EFN20217.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 222

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 14/147 (9%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
                     +   +    ++        AG    +      +  +       +L     
Sbjct: 84  FDVDEYVHAALRAGASGFLLKDARPEELLAG----IHAVAGGDAVIAPALTRRILDEYAR 139

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                                     +LTERE   L   G G+T+ EIA +  ++  TV 
Sbjct: 140 ----------HVPARRGDPGEDPRVASLTEREREILVAIGKGWTNGEIAARFVVAESTVK 189

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++G    K+ A +RIQA+  A   G 
Sbjct: 190 THVGRVLAKIGARDRIQAVIFAYDRGL 216


>gi|325676385|ref|ZP_08156064.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325552946|gb|EGD22629.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 236

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   +   +   ++ +     L+++E +   L G G T+ EIAE+L L+  T+  Y
Sbjct: 151 LDSRATAALMQRMR-SERTADPLAELSDQERAVFDLIGQGLTNREIAERLFLAEKTIKNY 209

Query: 209 LGSATVKLDAVNRIQAIAKAIRF 231
           +     KL    R QA   A   
Sbjct: 210 VSRLLAKLGMQRRTQAAVLATEL 232


>gi|291448479|ref|ZP_06587869.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291351426|gb|EFE78330.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 168

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT R+   L L   G ++  I   L ++  TV A+L     KL   +R +A+  A+R G
Sbjct: 97  PLTRRQKEVLNLLAQGLSNRRIGRALHITEQTVKAHLHMVYHKLGVADRTEAVVIALRQG 156

Query: 233 YI 234
            +
Sbjct: 157 LV 158


>gi|284047162|ref|YP_003397502.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951383|gb|ADB54127.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 31/174 (17%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +           +   +         +A  V         VI +         +A + ++
Sbjct: 55  LDVHLPDGGGQAVIPAVHAERPGVRFLALSVSDAAEDVVAVIRSGARGYVTKSIAPDELV 114

Query: 148 EAH------------GACYQVITDFLELFKKRS---------------SAARNLTERETS 180
           +A                  V+  F                            LT RE  
Sbjct: 115 DAIHRVADGDAVFSPWLAGFVLDAFGGGGGGGEGGGRGAGAAGAGGGDPELDQLTAREQD 174

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L   GY  +EI  +L +SV TV +++ +   KL   +R +    A +   I
Sbjct: 175 VLLLIARGYMYKEIGARLHISVKTVESHVSNVLRKLQLSSRHELTRWAAQRRMI 228


>gi|297193492|ref|ZP_06910890.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718233|gb|EDY62141.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 7/138 (5%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-- 161
             +         AG +  +         +            V               L  
Sbjct: 84  FDLDEYAYKGLRAGASGFLIKDAMPEELLSGIRAVAAGDAVVAPSLTRRLLDTYVQHLPE 143

Query: 162 -----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                 +          LTERE   L + G G+T+ EIA +  L+  TV  ++     K 
Sbjct: 144 STAAGTVEPVPDERLARLTEREREILTVIGQGWTNTEIASRFHLAESTVKTHVSRILAKT 203

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A +R+QA+  A     +
Sbjct: 204 GARDRVQAVILAYDTRLV 221


>gi|326793852|ref|YP_004311672.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544616|gb|ADZ89836.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 217

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           F+ + K+  + A  LT+RET  L     G  ++E+A  L +SV TV  +  +   KL+  
Sbjct: 143 FVAVEKESDTQAEALTKRETDVLVELASGRANKEVARSLNISVRTVETHRQNIKNKLNIH 202

Query: 220 NRIQAIAKAIRFGY 233
                   AI  G 
Sbjct: 203 TTAGLTKYAIDKGL 216


>gi|302528552|ref|ZP_07280894.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302437447|gb|EFL09263.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 216

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKK 166
           +       AG            G V   ++   +L+                   E  ++
Sbjct: 91  IRALRAGAAGFLVKSTPPEDLIGLVRVAADGHTVLSPSAARRLVALSADGHRRDDEARRR 150

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LTERE   L   G+G ++ +IA +L L+  TV +Y+    VKLD  NR QA  
Sbjct: 151 TA----GLTERERDVLACLGEGLSNADIAARLHLAEATVKSYVSRMLVKLDCTNRTQAGL 206

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 207 LAHEAGLV 214


>gi|291303233|ref|YP_003514511.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572453|gb|ADD45418.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 14/166 (8%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNG 130
                  +    +  +        L  RL       A +                    G
Sbjct: 45  ALLATTTVDVALVDAKMPGMDGVALIRRLAAEHPSVACVILTTFDDDEYIFGGLAAGARG 104

Query: 131 YVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAA-RNLTERETSCLQLA 185
           +++  +    L   +   A G               L           L+ RE     L 
Sbjct: 105 FLLKDTPPDELVTTLRRAAAGETVLGSPAAERVVARLRTDPHGTGLEALSAREREVGDLI 164

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             G  + EIA +L ++  TV  ++ +   KL   +R Q      + 
Sbjct: 165 AQGAHNREIARRLFITEGTVKNHVTALLRKLGMRDRTQLALFLAKH 210


>gi|227115196|ref|ZP_03828852.1| two-component system response regulator protein [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 209

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 11/160 (6%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--- 142
           PI    I      ES   L  RL      F  I   +          +       L    
Sbjct: 47  PIDVAVIDIAMPDESGLSLLTRLRQQRPNFRAIILSIYDTTAFVQSALDAGAGGYLTKRC 106

Query: 143 -NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194
             E +++A                  +  ++        LT RE     L  +G + + I
Sbjct: 107 GPEELVQAVRVVSSGGLYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+L LS  TV+ +  +   KL   + ++ +  A++   +
Sbjct: 167 AEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206


>gi|17546614|ref|NP_520016.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428913|emb|CAD15597.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 252

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 11/188 (5%)

Query: 49  QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108
                  ++ ++       +        +  + +   P+ +           + ++ +  
Sbjct: 53  MDHIVTVDFPIEYLAAIQNVAGGIDTPLMRRWFATRSPVYF---DAAAPTAETDRVWLAK 109

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--------NEVIIEAHGACYQVITDF 160
                    +A  +    H  G          +          ++    H    + + D 
Sbjct: 110 FIMHDLRNAVADGIYDEGHCIGTYFSFHRLPSINAPFLTSVLRDLTPVLHRTLMRAVADT 169

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            + +         L+ERE       G G ++ EIA    +S +TV  +L     K    N
Sbjct: 170 EKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCAN 229

Query: 221 RIQAIAKA 228
           R+     A
Sbjct: 230 RVGVAVLA 237


>gi|117927726|ref|YP_872277.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648189|gb|ABK52291.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 225

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 155 QVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           +V+    +  ++         LTE+E   L+L G+G T+ +I E+L L+  TV  Y+ S 
Sbjct: 138 RVLQRLRDQAERPEPGNPYAALTEQERRVLELIGEGLTNRQIGERLFLAEKTVKNYVSSI 197

Query: 213 TVKLDAVNRIQAIAKAIRF 231
             KL    R QA   A+  
Sbjct: 198 LAKLGLQRRTQAAVLAVEH 216


>gi|330809798|ref|YP_004354260.1| two-component system response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377906|gb|AEA69256.1| putative two-component system response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 222

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++    E     ++  + LT RE   L L   G+++ EI EKLG++  T  A++  
Sbjct: 132 VSARLLRRMTERGANGATQVQALTARERQVLGLVAGGFSNREIGEKLGIAPGTAKAHVER 191

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A +R QA  + +  G +
Sbjct: 192 VIGKLGAADRTQAAVRGVALGLV 214


>gi|326381911|ref|ZP_08203604.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199337|gb|EGD56518.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 221

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 41/134 (30%), Gaps = 20/134 (14%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY---QVITDFLE-------- 162
           +A  V          I           +    + +A         V +  L         
Sbjct: 85  LALSVSDAATDVIATIRAGARGYVTKTIDGGELADAVRRVAEGDAVFSPRLAGFVLDSFT 144

Query: 163 -----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                   +      +LT RE   L+L   GYT  EIAE+L +SV TV  +  +   K  
Sbjct: 145 GRSPVPEPQLDPELDSLTRREMEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQ 204

Query: 218 AVNRIQAIAKAIRF 231
             NR      A+  
Sbjct: 205 QSNRNALTRWAVNR 218


>gi|253999547|ref|YP_003051610.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986226|gb|ACT51083.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4]
          Length = 265

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RE   ++   +G T++EI   L +S  TV  +L     KLD +NR QA++K
Sbjct: 203 QLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNHLQRIFKKLDVLNRAQAVSK 257


>gi|237654658|ref|YP_002890972.1| transcriptional regulator NarL [Thauera sp. MZ1T]
 gi|237625905|gb|ACR02595.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 214

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 16/156 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +           +   L         +   V          +       L  ++  EA  
Sbjct: 56  LDLNMRDGDGLDMLRGLRAARSEARVVMVTVSDSGEDVVAALRGGAEGYLLKDMEPEAML 115

Query: 152 ACY---------------QVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIA 195
                              ++   L    +  SA A  LTE+E   L+    G  +++I 
Sbjct: 116 EALQAVAAGRVVIPPQLNHLLAAALRGESRPQSAGAAGLTEQELRILEKIAAGLPNKQIG 175

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L ++  TV  ++     KL+  +R++A   A+  
Sbjct: 176 RELDIAEGTVKVHVKHILRKLELRSRVEAAVWAVEH 211


>gi|148273146|ref|YP_001222707.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831076|emb|CAN02021.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 224

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                ++  +        ++A   LT+RE         G ++ EIA  L ++  TV  ++
Sbjct: 139 QRLLERLAVERTAPPDPDTAALDVLTDRERVVFTRLVTGASNPEIARDLSIAEVTVKTHV 198

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
           G    KL   +R+  +  A R G 
Sbjct: 199 GHILTKLAVRDRVHLVIWAHRRGL 222


>gi|300691151|ref|YP_003752146.1| transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
 gi|299078211|emb|CBJ50858.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 252

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 11/188 (5%)

Query: 49  QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108
                  ++ ++       +        +  + +   P+ +   +         ++ +  
Sbjct: 53  MDHIVTVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---EATAPTAEVDRVWLAK 109

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE--------AHGACYQVITDF 160
                    +A  V    H  G          +    +           H    + + D 
Sbjct: 110 FVAHDLRNAVADGVYDEGHCIGTYFSFHRLPSIDAPFLASVLRDLTPVLHRTLMRAVADS 169

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
              +         L+ERE       G G ++ EIA    +S +TV  +L     K    N
Sbjct: 170 ERTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCAN 229

Query: 221 RIQAIAKA 228
           R+     A
Sbjct: 230 RVGVAVLA 237


>gi|217974804|ref|YP_002359555.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217499939|gb|ACK48132.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 209

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE---AHGACYQVI 157
              +    +    +   V         ++              ++++E        ++VI
Sbjct: 69  LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVI 128

Query: 158 TDFLE--LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +D +E  L++ + +        +LT RE   L+   +G ++  I+E L +S  TV  ++ 
Sbjct: 129 SDEVEEYLYELKDATDEQEWISSLTPRELQILEQLAEGLSNRMISEHLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|126641440|ref|YP_001084424.1| putative two-component response regulator protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 257

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 193 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 247


>gi|37528119|ref|NP_931464.1| hypothetical protein plu4288 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787556|emb|CAE16660.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 251

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 63/224 (28%), Gaps = 28/224 (12%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            L  ++  I   N  +Y            + + +    + D+ +          D F   
Sbjct: 24  LLTWLEQFITFDNAIVYAFEQGSP----PRCLSKTEKKNSDAINQIYQQGAYLQDPFYQA 79

Query: 80  FNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              G        + +             +               ++L   +   + F  E
Sbjct: 80  LIDGAGTDLFTLRELVPSGFY--HTDYYLNFYRKTGWQDETGVLLKLSPQRQLGLFFGKE 137

Query: 138 FLMLANEVIIEAHGACYQ----VITDFLELFKK---RSSAAR----------NLTERETS 180
                   I + H    +    +I     L      +  AA            LT RE  
Sbjct: 138 NQPF---FIQKPHWKNLKTVLEIIRSVARLHDDMTQQPPAAEMVCLDTQTRYALTPRECE 194

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            ++L   G  S +IAEKL +S  TV  +  +   KL   ++ + 
Sbjct: 195 IVELILQGKGSPQIAEKLFISTGTVKNHRKNIYQKLQIRSQAEL 238


>gi|323965314|gb|EGB60772.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
          Length = 209

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147
           I      E+   L  RL      F  I   +          +       L      E ++
Sbjct: 53  IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112

Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +A        H  C   I   L    + + A   LT RE     L   G + +EIA KL 
Sbjct: 113 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV+ +  +   KL+  + I+ +  A+    +
Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|320450456|ref|YP_004202552.1| DNA-binding response regulator, LuxR family [Thermus scotoductus
           SA-01]
 gi|320150625|gb|ADW22003.1| DNA-binding response regulator, LuxR family [Thermus scotoductus
           SA-01]
          Length = 206

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 153 CYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
             ++    L + +     +     +LT RE   L+L   G + +E+A+ LGLS  TV  +
Sbjct: 118 APELKRRLLRVAQGEEKLKPPDLPSLTSREEEVLRLLAQGLSVKEMAKALGLSPDTVKDH 177

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L S   KL A NR++A+ KA   G++
Sbjct: 178 LESLYGKLLARNRVEALEKARSLGFL 203


>gi|311899923|dbj|BAJ32331.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 243

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 33/78 (42%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                E   + +     LT RE   L+L   G  +  +A+ L LSV TV  ++     KL
Sbjct: 143 FAGRHEPPPRLARELAGLTPREREVLRLVARGLPNPAVADHLELSVATVKTHVRRLLAKL 202

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A +R Q +  A   G +
Sbjct: 203 HAHDRAQLVVIAYETGLV 220


>gi|281419800|ref|ZP_06250799.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
 gi|281406176|gb|EFB36856.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
          Length = 318

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIA+ L +S++TV  +  +   KL   +       AI  
Sbjct: 249 EQLSDREKDVIVALVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 NLV 311


>gi|163747813|ref|ZP_02155152.1| putative GerE family transcriptional regulator [Oceanibulbus
           indolifex HEL-45]
 gi|161378921|gb|EDQ03351.1| putative GerE family transcriptional regulator [Oceanibulbus
           indolifex HEL-45]
          Length = 186

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 156 VITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            +   L L       A   LT RE   L    +G  ++ IA  LGLS HTV  ++     
Sbjct: 102 AVQASLSLHDPALKVAKDELTNREMQVLTCVAEGKQNKVIANSLGLSEHTVKLHIHHVIS 161

Query: 215 KLDAVNRIQAIAK 227
           KL   NR +A   
Sbjct: 162 KLGVNNRTEAAVW 174


>gi|170726595|ref|YP_001760621.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169811942|gb|ACA86526.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 218

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +LT R+   L+    G  +++IA  L +S  TV +++ S   KL   NR+QA+ 
Sbjct: 152 SLTRRQLMVLKCMTKGEANKQIAYNLNVSETTVKSHVSSILKKLGVSNRVQAVV 205


>gi|39937308|ref|NP_949584.1| response regulator FixJ [Rhodopseudomonas palustris CGA009]
 gi|192293088|ref|YP_001993693.1| response regulator FixJ [Rhodopseudomonas palustris TIE-1]
 gi|39651166|emb|CAE29689.1| two-component nitrogen fixation transcriptional regulator fixJ,
           LuxR family [Rhodopseudomonas palustris CGA009]
 gi|192286837|gb|ACF03218.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 203

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 129 NGYVIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
               +  S+F+    +      +IE      Q       + +  ++  ++L+ RE   + 
Sbjct: 91  EAMKLGASDFIEKPFDDDRLIGLIELALKQAQEGAKSEAVTQDIATRIQSLSPRERQVMD 150

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               G +++ IA +  +S  T+  Y  +   K+ A +  + +  A+R G I
Sbjct: 151 GLIAGMSNKVIAREFDISPRTIEVYRANVMTKMQATSLSELVRMAMRGGVI 201


>gi|15804265|ref|NP_290304.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 EDL933]
 gi|15833860|ref|NP_312633.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. Sakai]
 gi|16131539|ref|NP_418125.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. MG1655]
 gi|26250413|ref|NP_756453.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           CFT073]
 gi|30064982|ref|NP_839153.1| DNA-binding transcriptional activator UhpA [Shigella flexneri 2a
           str. 2457T]
 gi|56480419|ref|NP_709525.2| DNA-binding transcriptional activator UhpA [Shigella flexneri 2a
           str. 301]
 gi|74313989|ref|YP_312408.1| DNA-binding transcriptional activator UhpA [Shigella sonnei Ss046]
 gi|82546057|ref|YP_410004.1| DNA-binding transcriptional activator UhpA [Shigella boydii Sb227]
 gi|89110343|ref|AP_004123.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. W3110]
 gi|110644017|ref|YP_671747.1| DNA-binding transcriptional activator UhpA [Escherichia coli 536]
 gi|110807635|ref|YP_691155.1| DNA-binding transcriptional activator UhpA [Shigella flexneri 5
           str. 8401]
 gi|157156118|ref|YP_001465154.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           E24377A]
 gi|157163151|ref|YP_001460469.1| DNA-binding transcriptional activator UhpA [Escherichia coli HS]
 gi|168748618|ref|ZP_02773640.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4113]
 gi|168753555|ref|ZP_02778562.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4401]
 gi|168759852|ref|ZP_02784859.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4501]
 gi|168772299|ref|ZP_02797306.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4196]
 gi|168779887|ref|ZP_02804894.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4076]
 gi|168785620|ref|ZP_02810627.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC869]
 gi|168798701|ref|ZP_02823708.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC508]
 gi|170018090|ref|YP_001723044.1| DNA-binding transcriptional activator UhpA [Escherichia coli ATCC
           8739]
 gi|170083176|ref|YP_001732496.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. DH10B]
 gi|170684214|ref|YP_001745997.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           SMS-3-5]
 gi|187730907|ref|YP_001882486.1| DNA-binding transcriptional activator UhpA [Shigella boydii CDC
           3083-94]
 gi|188493334|ref|ZP_03000604.1| transcriptional regulatory protein UhpA [Escherichia coli 53638]
 gi|191170357|ref|ZP_03031910.1| transcriptional regulatory protein UhpA [Escherichia coli F11]
 gi|193063810|ref|ZP_03044897.1| transcriptional regulatory protein UhpA [Escherichia coli E22]
 gi|194435875|ref|ZP_03067978.1| transcriptional regulatory protein UhpA [Escherichia coli 101-1]
 gi|195936288|ref|ZP_03081670.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808592|ref|ZP_03250929.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4206]
 gi|208813985|ref|ZP_03255314.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4045]
 gi|208819791|ref|ZP_03260111.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4042]
 gi|209398144|ref|YP_002273200.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4115]
 gi|209921144|ref|YP_002295228.1| DNA-binding transcriptional activator UhpA [Escherichia coli SE11]
 gi|217324810|ref|ZP_03440894.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. TW14588]
 gi|218551201|ref|YP_002384992.1| DNA-binding transcriptional activator UhpA [Escherichia fergusonii
           ATCC 35469]
 gi|218556234|ref|YP_002389147.1| DNA-binding transcriptional activator UhpA [Escherichia coli IAI1]
 gi|218697391|ref|YP_002405058.1| DNA-binding transcriptional activator UhpA [Escherichia coli 55989]
 gi|218702513|ref|YP_002410142.1| DNA-binding transcriptional activator UhpA [Escherichia coli IAI39]
 gi|227883891|ref|ZP_04001696.1| response regulator [Escherichia coli 83972]
 gi|238902760|ref|YP_002928556.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli BW2952]
 gi|253771468|ref|YP_003034299.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038887|ref|ZP_04872939.1| transcriptional regulatory protein UhpA [Escherichia sp. 1_1_43]
 gi|254163622|ref|YP_003046730.1| DNA-binding transcriptional activator UhpA [Escherichia coli B str.
           REL606]
 gi|254795677|ref|YP_003080514.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. TW14359]
 gi|256025599|ref|ZP_05439464.1| DNA-binding transcriptional activator UhpA [Escherichia sp.
           4_1_40B]
 gi|260846545|ref|YP_003224323.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O103:H2 str. 12009]
 gi|260857919|ref|YP_003231810.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O26:H11 str. 11368]
 gi|260870399|ref|YP_003236801.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O111:H- str. 11128]
 gi|261225825|ref|ZP_05940106.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258870|ref|ZP_05951403.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O157:H7 str. FRIK966]
 gi|291285092|ref|YP_003501910.1| transcriptional regulatory protein UhpA [Escherichia coli O55:H7
           str. CB9615]
 gi|293413120|ref|ZP_06655786.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417148|ref|ZP_06659775.1| two-component system [Escherichia coli B185]
 gi|293463994|ref|ZP_06664408.1| two-component system [Escherichia coli B088]
 gi|297522028|ref|ZP_06940414.1| DNA-binding transcriptional activator UhpA [Escherichia coli OP50]
 gi|300984793|ref|ZP_07177116.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300988789|ref|ZP_07178831.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301028450|ref|ZP_07191696.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301047486|ref|ZP_07194563.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|301644338|ref|ZP_07244339.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306815974|ref|ZP_07450112.1| DNA-binding transcriptional activator UhpA [Escherichia coli NC101]
 gi|307140369|ref|ZP_07499725.1| DNA-binding transcriptional activator UhpA [Escherichia coli H736]
 gi|307313261|ref|ZP_07592886.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|312972039|ref|ZP_07786213.1| transcriptional regulatory protein uhpA [Escherichia coli 1827-70]
 gi|331649497|ref|ZP_08350583.1| transcriptional regulatory protein UhpA [Escherichia coli M605]
 gi|331655325|ref|ZP_08356324.1| transcriptional regulatory protein UhpA [Escherichia coli M718]
 gi|331660015|ref|ZP_08360953.1| transcriptional regulatory protein UhpA [Escherichia coli TA206]
 gi|331670512|ref|ZP_08371351.1| transcriptional regulatory protein UhpA [Escherichia coli TA271]
 gi|331675164|ref|ZP_08375917.1| transcriptional regulatory protein UhpA [Escherichia coli TA280]
 gi|331685397|ref|ZP_08385983.1| transcriptional regulatory protein UhpA [Escherichia coli H299]
 gi|84029410|sp|P0AGA8|UHPA_ECO57 RecName: Full=Transcriptional regulatory protein uhpA
 gi|84029411|sp|P0AGA7|UHPA_ECOL6 RecName: Full=Transcriptional regulatory protein uhpA
 gi|84029412|sp|P0AGA6|UHPA_ECOLI RecName: Full=Transcriptional regulatory protein uhpA
 gi|84029413|sp|P0AGA9|UHPA_SHIFL RecName: Full=Transcriptional regulatory protein uhpA
 gi|12518501|gb|AAG58868.1|AE005598_12 response regulator, positive activator of uhpT transcription
           (sensor, uhpB) [Escherichia coli O157:H7 str. EDL933]
 gi|26110843|gb|AAN83027.1|AE016769_142 Transcriptional Regulatory protein uhpA [Escherichia coli CFT073]
 gi|148112|gb|AAA24720.1| UhpA protein [Escherichia coli]
 gi|148117|gb|AAA24724.1| hexosephosphate utilization protein [Escherichia coli]
 gi|290518|gb|AAA62021.1| hexosephosphate utilization protein [Escherichia coli]
 gi|1790102|gb|AAC76692.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. MG1655]
 gi|13364081|dbj|BAB38029.1| response regulator UhpA [Escherichia coli O157:H7 str. Sakai]
 gi|30043243|gb|AAP18964.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|56383970|gb|AAN45232.2| response regulator [Shigella flexneri 2a str. 301]
 gi|73857466|gb|AAZ90173.1| response regulator, positive activator of uhpT transcription
           (sensor, uhpB) [Shigella sonnei Ss046]
 gi|81247468|gb|ABB68176.1| UhpA [Shigella boydii Sb227]
 gi|85676374|dbj|BAE77624.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K12 substr. W3110]
 gi|110345609|gb|ABG71846.1| transcriptional regulatory protein UhpA [Escherichia coli 536]
 gi|110617183|gb|ABF05850.1| Transcriptional Regulatory protein uhpA [Shigella flexneri 5 str.
           8401]
 gi|157068831|gb|ABV08086.1| transcriptional regulatory protein UhpA [Escherichia coli HS]
 gi|157078148|gb|ABV17856.1| transcriptional regulatory protein UhpA [Escherichia coli E24377A]
 gi|169753018|gb|ACA75717.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|169891011|gb|ACB04718.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. DH10B]
 gi|170521932|gb|ACB20110.1| transcriptional regulatory protein UhpA [Escherichia coli SMS-3-5]
 gi|187427899|gb|ACD07173.1| transcriptional regulatory protein UhpA [Shigella boydii CDC
           3083-94]
 gi|187771641|gb|EDU35485.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4196]
 gi|188016946|gb|EDU55068.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4113]
 gi|188488533|gb|EDU63636.1| transcriptional regulatory protein UhpA [Escherichia coli 53638]
 gi|189002329|gb|EDU71315.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4076]
 gi|189358985|gb|EDU77404.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4401]
 gi|189369800|gb|EDU88216.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4501]
 gi|189374507|gb|EDU92923.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC869]
 gi|189378793|gb|EDU97209.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC508]
 gi|190909165|gb|EDV68751.1| transcriptional regulatory protein UhpA [Escherichia coli F11]
 gi|192930525|gb|EDV83132.1| transcriptional regulatory protein UhpA [Escherichia coli E22]
 gi|194425418|gb|EDX41402.1| transcriptional regulatory protein UhpA [Escherichia coli 101-1]
 gi|208728393|gb|EDZ77994.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4206]
 gi|208735262|gb|EDZ83949.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4045]
 gi|208739914|gb|EDZ87596.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4042]
 gi|209159544|gb|ACI36977.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4115]
 gi|209754358|gb|ACI75486.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209754360|gb|ACI75487.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209754362|gb|ACI75488.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209754364|gb|ACI75489.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209754366|gb|ACI75490.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209914403|dbj|BAG79477.1| two-component response regulator [Escherichia coli SE11]
 gi|217321031|gb|EEC29455.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. TW14588]
 gi|218354123|emb|CAV00698.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli 55989]
 gi|218358742|emb|CAQ91400.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia fergusonii ATCC 35469]
 gi|218363002|emb|CAR00640.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli IAI1]
 gi|218372499|emb|CAR20375.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli IAI39]
 gi|222035387|emb|CAP78132.1| Transcriptional regulatory protein uhpA [Escherichia coli LF82]
 gi|226838852|gb|EEH70879.1| transcriptional regulatory protein UhpA [Escherichia sp. 1_1_43]
 gi|227839169|gb|EEJ49635.1| response regulator [Escherichia coli 83972]
 gi|238860874|gb|ACR62872.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli BW2952]
 gi|242379208|emb|CAQ34012.1| UhpA transcriptional activator [Escherichia coli BL21(DE3)]
 gi|253322512|gb|ACT27114.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975523|gb|ACT41194.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli B str. REL606]
 gi|253979679|gb|ACT45349.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli BL21(DE3)]
 gi|254595077|gb|ACT74438.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli O157:H7 str. TW14359]
 gi|257756568|dbj|BAI28070.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O26:H11 str. 11368]
 gi|257761692|dbj|BAI33189.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O103:H2 str. 12009]
 gi|257766755|dbj|BAI38250.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O111:H- str. 11128]
 gi|260447310|gb|ACX37732.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|281180726|dbj|BAI57056.1| two-component response regulator [Escherichia coli SE15]
 gi|281603100|gb|ADA76084.1| Transcriptional regulatory protein uhpA [Shigella flexneri 2002017]
 gi|284923751|emb|CBG36848.1| two-component system response regulator [Escherichia coli 042]
 gi|290764965|gb|ADD58926.1| transcriptional regulatory protein UhpA [Escherichia coli O55:H7
           str. CB9615]
 gi|291321626|gb|EFE61062.1| two-component system [Escherichia coli B088]
 gi|291431179|gb|EFF04172.1| two-component system [Escherichia coli B185]
 gi|291468253|gb|EFF10748.1| conserved hypothetical protein [Escherichia coli B354]
 gi|299878561|gb|EFI86772.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300300601|gb|EFJ56986.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300305857|gb|EFJ60377.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300408343|gb|EFJ91881.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301077279|gb|EFK92085.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|305850370|gb|EFM50827.1| DNA-binding transcriptional activator UhpA [Escherichia coli NC101]
 gi|306906944|gb|EFN37453.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|307555813|gb|ADN48588.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli ABU 83972]
 gi|309704120|emb|CBJ03467.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310334416|gb|EFQ00621.1| transcriptional regulatory protein uhpA [Escherichia coli 1827-70]
 gi|312948240|gb|ADR29067.1| DNA-binding transcriptional activator UhpA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313647672|gb|EFS12120.1| transcriptional regulatory protein uhpA [Shigella flexneri 2a str.
           2457T]
 gi|315062977|gb|ADT77304.1| DNA-binding response regulator in two-component regulatory system
           with uhpB [Escherichia coli W]
 gi|315138251|dbj|BAJ45410.1| transcriptional regulatory protein UhpA [Escherichia coli DH1]
 gi|315254644|gb|EFU34612.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315292893|gb|EFU52245.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315296912|gb|EFU56199.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|315618626|gb|EFU99212.1| transcriptional regulatory protein uhpA [Escherichia coli 3431]
 gi|320185558|gb|EFW60324.1| Transcriptional regulatory protein UhpA [Shigella flexneri CDC
           796-83]
 gi|320191227|gb|EFW65877.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC1212]
 gi|320193778|gb|EFW68411.1| Transcriptional regulatory protein UhpA [Escherichia coli
           WV_060327]
 gi|320639396|gb|EFX09011.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. G5101]
 gi|320644841|gb|EFX13877.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H- str. 493-89]
 gi|320650105|gb|EFX18601.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H- str. H 2687]
 gi|320655452|gb|EFX23387.1| DNA-binding transcriptional activator UhpA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661078|gb|EFX28514.1| DNA-binding transcriptional activator UhpA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666203|gb|EFX33209.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323164723|gb|EFZ50518.1| transcriptional regulatory protein uhpA [Shigella sonnei 53G]
 gi|323173283|gb|EFZ58912.1| transcriptional regulatory protein uhpA [Escherichia coli LT-68]
 gi|323177678|gb|EFZ63262.1| transcriptional regulatory protein uhpA [Escherichia coli 1180]
 gi|323182462|gb|EFZ67866.1| transcriptional regulatory protein uhpA [Escherichia coli 1357]
 gi|323376430|gb|ADX48698.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|323934785|gb|EGB31167.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323939146|gb|EGB35360.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323944138|gb|EGB40218.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323959735|gb|EGB55385.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323971147|gb|EGB66393.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324008070|gb|EGB77289.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324012667|gb|EGB81886.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324111568|gb|EGC05549.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|324115979|gb|EGC09905.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|325499479|gb|EGC97338.1| transcriptional regulatory protein UhpA [Escherichia fergusonii
           ECD227]
 gi|326337278|gb|EGD61113.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. 1044]
 gi|326341650|gb|EGD65439.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. 1125]
 gi|331041995|gb|EGI14139.1| transcriptional regulatory protein UhpA [Escherichia coli M605]
 gi|331047340|gb|EGI19418.1| transcriptional regulatory protein UhpA [Escherichia coli M718]
 gi|331053230|gb|EGI25263.1| transcriptional regulatory protein UhpA [Escherichia coli TA206]
 gi|331062574|gb|EGI34494.1| transcriptional regulatory protein UhpA [Escherichia coli TA271]
 gi|331067609|gb|EGI39011.1| transcriptional regulatory protein UhpA [Escherichia coli TA280]
 gi|331077768|gb|EGI48980.1| transcriptional regulatory protein UhpA [Escherichia coli H299]
 gi|332089563|gb|EGI94667.1| transcriptional regulatory protein uhpA [Shigella boydii 3594-74]
 gi|332345659|gb|AEE58993.1| transcriptional regulatory protein UhpA [Escherichia coli UMNK88]
 gi|332750484|gb|EGJ80893.1| transcriptional regulatory protein uhpA [Shigella flexneri K-671]
 gi|332750657|gb|EGJ81065.1| transcriptional regulatory protein uhpA [Shigella flexneri 4343-70]
 gi|332751700|gb|EGJ82098.1| transcriptional regulatory protein uhpA [Shigella flexneri 2747-71]
 gi|332764035|gb|EGJ94272.1| uhpA transcriptional activator [Shigella flexneri 2930-71]
 gi|332996079|gb|EGK15706.1| transcriptional regulatory protein uhpA [Shigella flexneri VA-6]
 gi|332997128|gb|EGK16744.1| transcriptional regulatory protein uhpA [Shigella flexneri K-218]
 gi|332997703|gb|EGK17314.1| transcriptional regulatory protein uhpA [Shigella flexneri K-272]
 gi|333013233|gb|EGK32606.1| transcriptional regulatory protein uhpA [Shigella flexneri K-304]
 gi|333013625|gb|EGK32990.1| transcriptional regulatory protein uhpA [Shigella flexneri K-227]
          Length = 196

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|330887817|gb|EGH20478.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str.
           301020]
          Length = 903

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 839 SDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKV 898

Query: 231 FGYI 234
            G +
Sbjct: 899 LGLL 902


>gi|326332686|ref|ZP_08198949.1| putative transcriptional regulatory protein DegU [Nocardioidaceae
           bacterium Broad-1]
 gi|325949514|gb|EGD41591.1| putative transcriptional regulatory protein DegU [Nocardioidaceae
           bacterium Broad-1]
          Length = 219

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + R      LT RE   L L   G ++ +IAEKL +SV+T+ +++  A  K++   R Q
Sbjct: 121 REDRLGTVAGLTTREVEVLALITQGLSNADIAEKLVVSVNTLKSHIRQAYRKIEVTTRSQ 180

Query: 224 AIAKAIRFGY 233
           A++ AI  G+
Sbjct: 181 AVSWAITHGF 190


>gi|284046302|ref|YP_003396642.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950523|gb|ADB53267.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 244

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               G +  +    ++A    +    A      D        +     LT+RE   + L 
Sbjct: 130 AAGEGLLAPSVTRRLIARFAALAPPPADAAGTADDGAAALPAAERLEVLTDREREVVALV 189

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G G T+ E+AE+L +S  T   ++  A  KLDA +R Q +  A   G +
Sbjct: 190 GAGLTNHELAERLVISPATAKTHVSRAMGKLDARDRAQLVVLAYESGLV 238


>gi|284041733|ref|YP_003392073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945954|gb|ADB48698.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 225

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L+L   G ++ ++A++L L+VHTV  ++     KL   +R QA+  A   G+
Sbjct: 160 LTEREAEILRLVARGMSNADVADELVLAVHTVKTHVARILAKLAVRDRTQAVVVAYESGF 219

Query: 234 I 234
           +
Sbjct: 220 V 220


>gi|166368457|ref|YP_001660730.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166090830|dbj|BAG05538.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 226

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYT 190
               E ++    +  +     L+   +  S             LT  E   +QL   G  
Sbjct: 120 PFEPEELVARVESSLKQAGRLLKRSTRIHSPDVTPVQVQGNVELTPTELKVVQLVAQGLA 179

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           + EIA KL +S  T+ +++ +   K    NR +    AI 
Sbjct: 180 NREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELSQWAIE 219


>gi|329938540|ref|ZP_08287965.1| luxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302513|gb|EGG46404.1| luxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAARNLTERETSCLQLAGD 187
            G  + ++   + A + +++A+     +      +  ++ + A   LT RE   L L G+
Sbjct: 118 QGSDLVSAVRTVAAGQSLLDANATARLLARLRGGQEQEEEAEALPGLTPREREILALIGE 177

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G T+ +I ++L L+  TV  ++     KL    R+QA   A + 
Sbjct: 178 GLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRVQAAVIATQA 221


>gi|258653619|ref|YP_003202775.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556844|gb|ACV79786.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Nakamurella multipartita DSM 44233]
          Length = 901

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G   +      +  + +                      + +  LT RE   L++ G G
Sbjct: 805 AGTRAWARAHPDVPRDWLAALVAQA----------GDDPETPSSGLTARELDILRMVGSG 854

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            T+++IA  L ++V+TV  YL +   KL A NR +A A A R G 
Sbjct: 855 RTNQQIATSLTVTVNTVKWYLKNIYTKLGATNRTEATAIARREGL 899


>gi|229514137|ref|ZP_04403598.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21]
 gi|229348117|gb|EEO13075.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21]
          Length = 208

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +    +    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALTQSE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + S+    +        V       C   + +        ++   +LT+RE     L 
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G   +EIA+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 157 VQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHQLL 205


>gi|194446637|ref|YP_002042854.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194405300|gb|ACF65522.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 200

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 102 PRDSDAETFVLALNAVARGMMFLPWDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195


>gi|167755537|ref|ZP_02427664.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402]
 gi|237734285|ref|ZP_04564766.1| response regulator [Mollicutes bacterium D7]
 gi|167704476|gb|EDS19055.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402]
 gi|229382515|gb|EEO32606.1| response regulator [Coprobacillus sp. D7]
          Length = 224

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R L + E   +Q  G G +++EIA+KL LS  TV  YL S   KL+  +R Q    A++ 
Sbjct: 155 RELNKPEWKVIQQVGFGLSNKEIAQKLFLSEGTVRNYLSSILSKLELRDRTQLAIWAVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|91790134|ref|YP_551086.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91699359|gb|ABE46188.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 214

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +A  +L++RE    +L   G +  EIA +L LSV TV+ +  +   K+   N+ + I  A
Sbjct: 144 AAHGSLSDREFEVFRLLVAGVSVTEIAGRLNLSVKTVSTHKANLMHKMGLHNQSELIRYA 203

Query: 229 IRFGY 233
           +R G 
Sbjct: 204 MRHGL 208


>gi|88807322|ref|ZP_01122834.1| response regulator like protein [Synechococcus sp. WH 7805]
 gi|88788536|gb|EAR19691.1| response regulator like protein [Synechococcus sp. WH 7805]
          Length = 234

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  + S  A  L++RE   LQ   +G T+ EI E L ++  T   ++ S   KL+  +R
Sbjct: 161 ALQSRNSGQAHALSDRERMVLQQLCNGLTNREIGEALTIAETTARGHVQSIMRKLNVKDR 220

Query: 222 IQAIAKAIRFGYI 234
             A  +AIR  ++
Sbjct: 221 TAAAVEAIRRHWV 233


>gi|307292976|ref|ZP_07572822.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306881042|gb|EFN12258.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 204

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVI------IEAHGACYQVITDFLELFKKRSS 169
            GIA PV +        I  S     A + I           A         ++  + + 
Sbjct: 73  RGIAMPVIILTGHGDVSIAVSAMKAGAVDFIEKPFEKAVLLAAIESAFERLADVEGRATR 132

Query: 170 AARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           AA        L+ RE   L+    G  ++ IA  LG+S  TV  +  +   KL   +  +
Sbjct: 133 AADATIRIAALSGREQDVLKGLARGLPNKTIAYDLGISPRTVEVHRANLMTKLGVRSLSE 192

Query: 224 AIAKAIRFGY 233
           A+  A   G 
Sbjct: 193 ALRIAFSAGI 202


>gi|295695280|ref|YP_003588518.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295410882|gb|ADG05374.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 223

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L     GY + E+A++L +SV TV  +  +   KL      + I    R   
Sbjct: 159 LTEREREVLVFLARGYQNREVAKELNISVKTVENHKANMMRKLGVSTVRELIEYGRRNRL 218

Query: 234 I 234
           +
Sbjct: 219 L 219


>gi|295096704|emb|CBK85794.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 210

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    L+ RE + L+   +G +++EIA++L LS  T++A+  +   KL   + ++ I  
Sbjct: 144 AAVDMPLSNREVTVLRYLANGLSNKEIADQLLLSNKTISAHKSNIFSKLGVQSIVELIDY 203

Query: 228 AIRFGYI 234
           A     +
Sbjct: 204 AKAHELL 210


>gi|254444518|ref|ZP_05057994.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258826|gb|EDY83134.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 216

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               QV+   +       +S    LT+RE   +QL G G ++ EIAE L LSV T+ ++ 
Sbjct: 129 RVADQVLHQIVSGPSNASASPVDRLTDRELEVVQLIGRGLSTREIAESLHLSVKTIESHR 188

Query: 210 GSATVKLDAVNRIQAIAKAIR 230
                KL+  N  + +  +++
Sbjct: 189 AHVKEKLNLRNATELVQFSVQ 209


>gi|87123676|ref|ZP_01079526.1| possible DNA-binding response regulator [Synechococcus sp. RS9917]
 gi|86168245|gb|EAQ69502.1| possible DNA-binding response regulator [Synechococcus sp. RS9917]
          Length = 261

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   L+    G +++EIA+ L +S+ TV +++ S   KL A +R  A+  A 
Sbjct: 181 PLAELSLREEDVLRGLCRGMSNQEIADALVVSIDTVKSHVSSLLRKLPANDRTHAVVVAF 240

Query: 230 RFGYI 234
           R G +
Sbjct: 241 REGLV 245


>gi|83951937|ref|ZP_00960669.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           nubinhibens ISM]
 gi|83836943|gb|EAP76240.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           nubinhibens ISM]
          Length = 218

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE + L     G +++++A  L +SV TV  +  +   KL   +       A+  
Sbjct: 149 EQLTNREQTILLQLAQGRSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEH 208

Query: 232 GYI 234
           G +
Sbjct: 209 GVL 211


>gi|146277025|ref|YP_001167184.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555266|gb|ABP69879.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 247

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            + + + I     +   +     +  +   +   +LTER+ +       G +++ IA +L
Sbjct: 146 RLASFDGIFLPTASLTALRGALPDREESHMAVNEHLTERQRAVCDALRRGKSNKIIAGEL 205

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L   TV  ++ +   KL A NR +A  K
Sbjct: 206 NLCESTVKVHIRNIMKKLGAKNRTEAAFK 234


>gi|326330507|ref|ZP_08196815.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951782|gb|EGD43814.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 226

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
             +    +  H A     T      ++R +    LTERE   L L G G ++ EIAE   
Sbjct: 133 APSTTRRLLEHFAASAPSTSTPAAAEQRLAV---LTEREREVLTLVGRGLSNTEIAETFV 189

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  TV  ++G    K  + +R+Q +  A   G +
Sbjct: 190 VAEATVKTHVGRLLAKTGSRDRVQLVVLAYETGLV 224


>gi|325277459|ref|ZP_08143066.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097402|gb|EGB95641.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 82

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            +        + A   LT RE   L     G +S EI + L     TVN ++ +   K D
Sbjct: 3   DNARHSQHPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILACKESTVNFHVSNILRKFD 62

Query: 218 AVNRIQAIAKAIRFGYI 234
              R+ A+ KAIR+G +
Sbjct: 63  VPTRVAAVIKAIRYGML 79


>gi|225873102|ref|YP_002754561.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794212|gb|ACO34302.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 237

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 32/79 (40%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            + D ++           LT RE   +    +G ++ +IA++  LS  TV  +L +   K
Sbjct: 155 ALHDLMQKAATPERKTYGLTPREMEVVGCIVEGCSNRDIAKQFTLSEETVKRHLSNIFDK 214

Query: 216 LDAVNRIQAIAKAIRFGYI 234
                R++    AI    +
Sbjct: 215 TGVSTRLELAMFAIAHHLV 233


>gi|255621530|ref|XP_002540217.1| Transcriptional regulatory protein uhpA, putative [Ricinus
           communis]
 gi|223498115|gb|EEF22167.1| Transcriptional regulatory protein uhpA, putative [Ricinus
           communis]
          Length = 179

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                   +       LT+RE   L    +G ++++IA +L LSV TV  +  +   KL+
Sbjct: 99  AALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLN 158

Query: 218 AVNRIQAIAKAIR 230
              + + I  A+ 
Sbjct: 159 IDGQAELIKFAVE 171


>gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 201

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 36/75 (48%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                   +     L+ERE   L  +  G TS EIA  LGLS  TV+ ++ +A  KL   
Sbjct: 125 ARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVA 184

Query: 220 NRIQAIAKAIRFGYI 234
            RI+A+ +A   G I
Sbjct: 185 TRIEAVVRASSSGII 199


>gi|82779201|ref|YP_405550.1| DNA-binding transcriptional activator UhpA [Shigella dysenteriae
           Sd197]
 gi|309784293|ref|ZP_07678932.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617]
 gi|81243349|gb|ABB64059.1| response regulator, positive activator of uhpT transcription
           [Shigella dysenteriae Sd197]
 gi|308927800|gb|EFP73268.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617]
          Length = 196

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I+  H        +  D     K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIVAVHTVATGGCYLTPDI--AIKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|94313908|ref|YP_587117.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357760|gb|ABF11848.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 237

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             A   L+ RE+  L L   GYT  EIA  L +SV+TV A++ +   KL   +R +A+ +
Sbjct: 168 PEAVVALSARESEILDLVARGYTYAEIARHLSISVNTVAAHIRNIYGKLAVNSRSEAVFE 227

Query: 228 AIRFGYI 234
           A + G +
Sbjct: 228 AHKLGLL 234


>gi|323492083|ref|ZP_08097245.1| transcriptional regulator LuxR [Vibrio brasiliensis LMG 20546]
 gi|323313644|gb|EGA66746.1| transcriptional regulator LuxR [Vibrio brasiliensis LMG 20546]
          Length = 211

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+    + 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207


>gi|229819768|ref|YP_002881294.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565681|gb|ACQ79532.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM
           12333]
          Length = 967

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              L +   R   +  LT+RE   L+L  DG ++ +I E+L +S  TV+ ++ +   KL 
Sbjct: 887 RARLAVPGVRLETSGVLTDRERDVLRLVADGLSNRQIGERLYISPKTVSVHISNLLAKLG 946

Query: 218 AVNRIQAIAKAIRFGYI 234
              R +A+  A R G +
Sbjct: 947 VARRAEAVDVAHRRGLL 963


>gi|159037407|ref|YP_001536660.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916242|gb|ABV97669.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 230

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 37/121 (30%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG +  +         V            +  E                   + A   
Sbjct: 106 LRAGASGFLLKNGTPEALVAAIRVVARGDGLIAPELTRRVIAAFAGPGGEPTTTAVALPE 165

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G  + EIA  L L   TV  ++     KL   +R+QA+  A   G 
Sbjct: 166 LTPREHEVLVLVASGANNAEIAAALRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGV 225

Query: 234 I 234
           +
Sbjct: 226 V 226


>gi|62182110|ref|YP_218527.1| putative transcriptional regulator (LuxR/UhpA familiy) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129743|gb|AAX67446.1| putative transcriptional regulator (LuxR/UhpA familiy) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716598|gb|EFZ08169.1| Putative HTH-type transcriptional regulator yhjB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 185

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 87  PRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 146

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 147 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 180


>gi|324997346|ref|ZP_08118458.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 222

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                +    L       +          L+ RE   L+L   GY + EIA+ L L+  T
Sbjct: 125 LISPAITERLLRAVHGVPAPPDDGAPLQELSGRELEVLRLLAAGYANREIAQVLVLAEGT 184

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++ +  +KL   +R +A+ +A+  G +
Sbjct: 185 VKNHVSNVLLKLGTRDRTRAVLRALHHGLL 214


>gi|323345346|ref|ZP_08085569.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323093460|gb|EFZ36038.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 203

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           +   +++                L       +++    + LT RE   L L   G+ ++E
Sbjct: 98  VPEEQLVRSVLMLVQYAHVGGKRLPAEPKKMQEKMLRTKILTGREIEVLSLIVQGFINKE 157

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA +L +S+ TV  +  +   KL   +       A+  GY+
Sbjct: 158 IAGRLNISITTVITHRKNIMEKLGMKSVSALTIYAVMHGYV 198


>gi|300723547|ref|YP_003712852.1| response regulator in two-component regulatory system with NarQ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630069|emb|CBJ90706.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus nematophila ATCC 19061]
          Length = 211

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           I+ H    + +  +L            LT+RE   L+   +G T++EIA+ L +S  TV 
Sbjct: 121 IDGHAVFSEKVHQYLSTRHLYIDPLSKLTKRELDVLKEISEGMTNKEIADFLFISEETVK 180

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231
            +  +   KL + +R++A    ++ 
Sbjct: 181 VHTRNLLKKLKSRSRLEATIIYLKH 205


>gi|260174355|ref|ZP_05760767.1| LuxR family transcriptional regulator [Bacteroides sp. D2]
 gi|315922623|ref|ZP_07918863.1| luxR family transcriptional regulator [Bacteroides sp. D2]
 gi|313696498|gb|EFS33333.1| luxR family transcriptional regulator [Bacteroides sp. D2]
          Length = 200

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L L   G  ++EIA+KL +S+ TV  +  +   KL   +       A+  
Sbjct: 133 EILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIMEKLGIKSVSGLTIYAVMN 192

Query: 232 GYI 234
           GYI
Sbjct: 193 GYI 195


>gi|291300770|ref|YP_003512048.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569990|gb|ADD42955.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT RE   + L   G T++EIA+ + +S  T   ++  A  K  A +R Q +  A   
Sbjct: 153 EDLTNREREAVALVAQGLTNDEIADHMAISPMTAKTHINRAMAKTAARDRAQLVVLAYES 212

Query: 232 GYI 234
           G +
Sbjct: 213 GLV 215


>gi|227523758|ref|ZP_03953807.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227089073|gb|EEI24385.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 209

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++A   L+++E   L+ A DG T++EIAEKL LS  TV  YL +   KL   NR++A+  
Sbjct: 143 NAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNM 202

Query: 228 AIRFGY 233
           A    +
Sbjct: 203 AKNNKW 208


>gi|163858791|ref|YP_001633089.1| virulence factors transcription regulator [Bordetella petrii DSM
           12804]
 gi|163262519|emb|CAP44822.1| virulence factors transcription regulator [Bordetella petrii]
          Length = 208

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 33/79 (41%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                       ++    L+++E   +Q+   G ++++I + L +S  TV+ Y      K
Sbjct: 129 AHRPVPSSDADAANKIERLSDKEIIVMQMLVRGMSNKDIGDALFISNKTVSTYKTRLMAK 188

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   + ++ +  A R   +
Sbjct: 189 LGVGSLVELVDFARRHQIV 207


>gi|294672981|ref|YP_003573597.1| LuxR family transcriptional regulator [Prevotella ruminicola 23]
 gi|294473471|gb|ADE82860.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23]
          Length = 320

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G +++EIA+ L +S++TV  +  +   KL   +       AI  
Sbjct: 251 DALSDREKDVIISLVQGMSNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVN 310

Query: 232 GYI 234
           G +
Sbjct: 311 GLV 313


>gi|56752243|ref|YP_172944.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300669|ref|YP_400877.1| two component LuxR family transcriptional regulator [Synechococcus
           elongatus PCC 7942]
 gi|56687202|dbj|BAD80424.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169550|gb|ABB57890.1| two component transcriptional regulator, LuxR family [Synechococcus
           elongatus PCC 7942]
          Length = 235

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 43/111 (38%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
            L   +   +   ++        +         ++    +L  + +  A +LT RE S L
Sbjct: 123 NLLRRRRETIAAVADTGNPDLAEVARQVAEIRAMLQQKPQLQTQATPLALDLTPREESVL 182

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +L   G  ++EIA +L  SV  +  Y+     K    +R + +  ++  G 
Sbjct: 183 KLVAQGLMNKEIARELDTSVRNIEKYVSRLFSKTGTNSRTELVRFSLEHGL 233


>gi|88800064|ref|ZP_01115634.1| DNA-binding response regulator GacA [Reinekea sp. MED297]
 gi|88777190|gb|EAR08395.1| DNA-binding response regulator GacA [Reinekea sp. MED297]
          Length = 214

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            L  F    +   +L++RE     +       +EI++KL LS  TVN Y      KL   
Sbjct: 134 ALTRFDGSDNPFSDLSDREMQIATMICSCKKVQEISDKLCLSPKTVNTYRYRVFEKLSVS 193

Query: 220 NRIQAIAKAIRFGYI 234
           + ++    AIR G +
Sbjct: 194 SDVELTHLAIRHGLL 208


>gi|325924567|ref|ZP_08186081.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325544945|gb|EGD16285.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 210

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F+ +       +ERE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 135 RARYQFRDQQPPRETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 195 RDRTRAVLKAITLRVI 210


>gi|282859563|ref|ZP_06268668.1| hemerythrin HHE cation binding domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282587791|gb|EFB92991.1| hemerythrin HHE cation binding domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 318

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           KR      L++RE   +     G +++EIAE L +S +TV  +  +   KL   +     
Sbjct: 243 KRPDRGDTLSDREKDVIVALVQGMSNKEIAEHLCISTNTVITHRRNIAKKLKIHSPAGLT 302

Query: 226 AKAIRFGYI 234
             AI    +
Sbjct: 303 IYAIVNNLV 311


>gi|239816522|ref|YP_002945432.1| LuxR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803099|gb|ACS20166.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 1022

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%)

Query: 146  IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +      C  +  +        S++   L+ RE + L+L   G +++ IAE+L +S HTV
Sbjct: 928  MASLARRCEALQRELAGAGAMPSASPEGLSRRELAVLRLLCAGCSNQAIAERLFISPHTV 987

Query: 206  NAYLGSATVKLDAVNRIQAIAKAIRF 231
              ++     K D  +R +A A A R 
Sbjct: 988  AHHVRHILSKTDCRSRTEAAAWAHRH 1013


>gi|227364555|ref|ZP_03848616.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325682330|ref|ZP_08161847.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|227070392|gb|EEI08754.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324978169|gb|EGC15119.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 223

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L   GYT++EIA K+ +S  TV A+      KL+  +  + +  A++  
Sbjct: 160 ALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHR 219

Query: 233 YI 234
            +
Sbjct: 220 LV 221


>gi|224026499|ref|ZP_03644865.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM
           18228]
 gi|224019735|gb|EEF77733.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM
           18228]
          Length = 194

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 141 LANEVIIEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           L  + +++A     +   +       ++      L+ RE   L L   G  ++EIA+KL 
Sbjct: 95  LPQDQLVQAIMQLRKYGHSMHPHPSTQQQDTEHELSPREIEVLVLITKGLINKEIADKLN 154

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S+ TV ++  + T KL   +       A+  GYI
Sbjct: 155 ISLTTVISHRKNITEKLGIKSVSGLAIYAVMRGYI 189


>gi|163839729|ref|YP_001624134.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953205|gb|ABY22720.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 209

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA---ARNLTERE 178
                GYV   +    ++  V   A G      ++    L+ F            L+ RE
Sbjct: 94  RAGARGYVTKAASGAEISAAVRTAASGDAVFSPRLAGFVLDAFGGAVPVDDELDRLSARE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              ++L   GY+ +E A++L +SV TV  ++ +   KL   +R +    A     +
Sbjct: 154 REVMRLIARGYSYKETAKELFISVKTVETHVSAVLRKLQLSSRHELTRWAANRRLL 209


>gi|157374068|ref|YP_001472668.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157316442|gb|ABV35540.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 209

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153
              L    +    +   V         ++              ++++E        H   
Sbjct: 69  LNGLRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKNAMQGHRVI 128

Query: 154 YQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            + + DFL   K  +       NLT RE   LQ   +G ++  I+E L +S  TV  ++ 
Sbjct: 129 SESVEDFLYELKDAAEEEEWLNNLTPRELQILQQVAEGKSNRVISELLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|17987890|ref|NP_540524.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M]
 gi|23501222|ref|NP_697349.1| LuxR family DNA-binding response regulator [Brucella suis 1330]
 gi|62289309|ref|YP_221102.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|82699239|ref|YP_413813.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|161618298|ref|YP_001592185.1| two component LuxR family transcriptional regulator [Brucella canis
           ATCC 23365]
 gi|163842602|ref|YP_001627006.1| two component LuxR family transcriptional regulator [Brucella suis
           ATCC 23445]
 gi|189023562|ref|YP_001934330.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225626842|ref|ZP_03784881.1| glycerol metabolism activator [Brucella ceti str. Cudo]
 gi|225851861|ref|YP_002732094.1| LuxR family two component transcriptional regulator [Brucella
           melitensis ATCC 23457]
 gi|237814800|ref|ZP_04593798.1| glycerol metabolism activator [Brucella abortus str. 2308 A]
 gi|254688629|ref|ZP_05151883.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 6 str. 870]
 gi|254696752|ref|ZP_05158580.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701135|ref|ZP_05162963.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 5 str. 513]
 gi|254707944|ref|ZP_05169772.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M163/99/10]
 gi|254709478|ref|ZP_05171289.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis B2/94]
 gi|254718509|ref|ZP_05180320.1| two component transcriptional regulator, LuxR family protein
           [Brucella sp. 83/13]
 gi|254729661|ref|ZP_05188239.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 4 str. 292]
 gi|256030972|ref|ZP_05444586.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M292/94/1]
 gi|256044043|ref|ZP_05446954.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060463|ref|ZP_05450634.1| two component transcriptional regulator, LuxR family protein
           [Brucella neotomae 5K33]
 gi|256112839|ref|ZP_05453760.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|256159018|ref|ZP_05456855.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M490/95/1]
 gi|256254376|ref|ZP_05459912.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti B1/94]
 gi|256256876|ref|ZP_05462412.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 9 str. C68]
 gi|256264624|ref|ZP_05467156.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368775|ref|YP_003106281.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260168107|ref|ZP_05754918.1| DNA-binding response regulator, LuxR family protein [Brucella sp.
           F5/99]
 gi|260545936|ref|ZP_05821677.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260563402|ref|ZP_05833888.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260567065|ref|ZP_05837535.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260754100|ref|ZP_05866448.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757320|ref|ZP_05869668.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761144|ref|ZP_05873487.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883126|ref|ZP_05894740.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261221537|ref|ZP_05935818.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315435|ref|ZP_05954632.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317000|ref|ZP_05956197.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261324454|ref|ZP_05963651.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751668|ref|ZP_05995377.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261757557|ref|ZP_06001266.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265983478|ref|ZP_06096213.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|265988037|ref|ZP_06100594.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265990454|ref|ZP_06103011.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994282|ref|ZP_06106839.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265997500|ref|ZP_06110057.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|294851704|ref|ZP_06792377.1| two component LuxR family transcriptional regulator [Brucella sp.
           NVSL 07-0026]
 gi|297247726|ref|ZP_06931444.1| two component LuxR family transcriptional regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306838316|ref|ZP_07471162.1| two component LuxR family transcriptional regulator [Brucella sp.
           NF 2653]
 gi|306842417|ref|ZP_07475069.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306844955|ref|ZP_07477536.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO1]
 gi|17983624|gb|AAL52788.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M]
 gi|23347103|gb|AAN29264.1| DNA-binding response regulator, LuxR family [Brucella suis 1330]
 gi|62195441|gb|AAX73741.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1
           str. 9-941]
 gi|82615340|emb|CAJ10301.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Brucella melitensis biovar Abortus 2308]
 gi|161335109|gb|ABX61414.1| two component transcriptional regulator, LuxR family [Brucella
           canis ATCC 23365]
 gi|163673325|gb|ABY37436.1| two component transcriptional regulator, LuxR family [Brucella suis
           ATCC 23445]
 gi|189019134|gb|ACD71856.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225618499|gb|EEH15542.1| glycerol metabolism activator [Brucella ceti str. Cudo]
 gi|225640226|gb|ACO00140.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis ATCC 23457]
 gi|237789637|gb|EEP63847.1| glycerol metabolism activator [Brucella abortus str. 2308 A]
 gi|255998933|gb|ACU47332.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260097343|gb|EEW81218.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260153418|gb|EEW88510.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156583|gb|EEW91663.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260667638|gb|EEX54578.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671576|gb|EEX58397.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674208|gb|EEX61029.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872654|gb|EEX79723.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260920121|gb|EEX86774.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261296223|gb|EEX99719.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300434|gb|EEY03931.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304461|gb|EEY07958.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737541|gb|EEY25537.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261741421|gb|EEY29347.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262551968|gb|EEZ07958.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|262765395|gb|EEZ11184.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001238|gb|EEZ13813.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094991|gb|EEZ18699.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660234|gb|EEZ30495.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|264662070|gb|EEZ32331.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|294820293|gb|EFG37292.1| two component LuxR family transcriptional regulator [Brucella sp.
           NVSL 07-0026]
 gi|297174895|gb|EFH34242.1| two component LuxR family transcriptional regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306274587|gb|EFM56376.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO1]
 gi|306287439|gb|EFM58916.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306406607|gb|EFM62840.1| two component LuxR family transcriptional regulator [Brucella sp.
           NF 2653]
 gi|326408357|gb|ADZ65422.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326538072|gb|ADZ86287.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis M5-90]
          Length = 213

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   +  R LT ++T  L +  +G  +++IA +LG+S  TV A++ +   KL   +R QA
Sbjct: 140 ESLIARLRTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 199

Query: 225 IAKAIRFG 232
           +    R G
Sbjct: 200 VILLSRIG 207


>gi|148544128|ref|YP_001271498.1| two component LuxR family transcriptional regulator [Lactobacillus
           reuteri DSM 20016]
 gi|148531162|gb|ABQ83161.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri DSM 20016]
          Length = 217

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L   GYT++EIA K+ +S  TV A+      KL+  +  + +  A++  
Sbjct: 154 ALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHR 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|15596681|ref|NP_250175.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100918|ref|ZP_01364836.1| hypothetical protein PaerPA_01001948 [Pseudomonas aeruginosa PACS2]
 gi|116049428|ref|YP_791769.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892642|ref|YP_002441511.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234581|ref|ZP_04927904.1| hypothetical protein PACG_00443 [Pseudomonas aeruginosa C3719]
 gi|254239833|ref|ZP_04933155.1| hypothetical protein PA2G_00461 [Pseudomonas aeruginosa 2192]
 gi|9947438|gb|AAG04873.1|AE004577_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584649|gb|ABJ10664.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166512|gb|EAZ52023.1| hypothetical protein PACG_00443 [Pseudomonas aeruginosa C3719]
 gi|126193211|gb|EAZ57274.1| hypothetical protein PA2G_00461 [Pseudomonas aeruginosa 2192]
 gi|218772870|emb|CAW28682.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 268

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 68/226 (30%), Gaps = 23/226 (10%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            + L++  +   N       +       ++   E H           +      D F   
Sbjct: 30  LILLLRQHLPFDNALAIFYPANGVPVALEEYDAEPHAGPASMLAY--LNGLYLLDPFYQA 87

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
              GL   +++  +         +  +      +    + F +++       +    + +
Sbjct: 88  CREGLASGLYRLEEIAPDHFRQSEYYLSYFHDNVLEDEVQFILQVPGQGALSLSLGMQRM 147

Query: 140 MLANE--VIIEAHGACYQVITDFLELFKKRSSAARN-------------------LTERE 178
               E  ++         ++    +   +R   A                     L+ERE
Sbjct: 148 FADEECGMLGLLSSWVLALMQQHWQQRSQRLLPAAPQEEMATQIRDALSHFGASVLSERE 207

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +L   GY+S+ +AE+L +S  T+  +      KLD  ++ + 
Sbjct: 208 LEIARLILRGYSSKAMAERLAISPETIKVHRRHLYAKLDISSQPEL 253


>gi|320534062|ref|ZP_08034606.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133731|gb|EFW26135.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 251

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT RE + L L   G ++  I E+L ++  TV +++ +   K    NR++ + 
Sbjct: 181 PSGPYEALTGREDAVLALVCQGLSNARIGERLHVAESTVKSHVKTILGKTGCRNRVELVI 240

Query: 227 KAIRFGYI 234
            A+  G +
Sbjct: 241 YALTTGLV 248


>gi|317130513|ref|YP_004096795.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475461|gb|ADU32064.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 155

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             L++RE   +     G  +  I E LG+S HTV  ++ +   KL+  +R+Q I
Sbjct: 97  DILSQREKEVIIHICKGLDNASIGESLGISPHTVKNHISNIYQKLNVKDRLQLI 150


>gi|228995222|ref|ZP_04154940.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
 gi|228764519|gb|EEM13350.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
          Length = 570

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G   + IA KL LS  TV  Y  +   KL   NR +A+ KA   G
Sbjct: 508 GLTKRELEVLNLLSQGSRYKTIASKLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDTG 567

Query: 233 YI 234
            +
Sbjct: 568 LL 569


>gi|13473938|ref|NP_105506.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14024689|dbj|BAB51292.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 215

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 124 LGFHKNGYVIFTSEFLMLANE---VIIEAHGACYQVITDFLE--LFKKRSSAARNLTERE 178
           L     GY++   +   L      +I        +V    L+  L  +    +RNLT RE
Sbjct: 98  LRAGARGYLLKIEDDSELVAAVAALIRGQTYFSPRVSECVLQDFLDGQSDVTSRNLTNRE 157

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              ++   +G +++ IA +LG+SV TV+++  +A  KL   N +  +  AIR   
Sbjct: 158 REVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKLGLRNAVDLVRYAIRNKL 212


>gi|84684209|ref|ZP_01012111.1| two component transcriptional regulator, LuxR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667962|gb|EAQ14430.1| two component transcriptional regulator, LuxR [Rhodobacterales
           bacterium HTCC2654]
          Length = 177

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
              S  A+ L++RE   L     G  ++EIA    +   TV  ++ +   KLDA NR  A
Sbjct: 107 PDPSVVAQKLSDRELQVLAGVCKGLQNKEIAHDFNIKEVTVKMHVRAVIRKLDAKNRTHA 166

Query: 225 IAKAIRFGYI 234
              A   G +
Sbjct: 167 AMIARDLGLV 176


>gi|117921851|ref|YP_871043.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614183|gb|ABK49637.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3]
          Length = 221

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL--GFHKNGYVIFT 135
              ++  +P++   +     +     L       L   + +   +R      +   ++ T
Sbjct: 56  AALDNKGIPLLASRLVPHVPV----ALYQVERNSLDQESAMLLGIRGLLFADQRMDLMLT 111

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGY 189
               M+A+E+  +             +L  +    A        LT RE + +Q    G 
Sbjct: 112 GLRKMVADELWYDRTLLSKMFRRVVQKLDGQNEMPADTVAMLQALTSRERTIIQFVSSGA 171

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            ++EIA +L +S HTV A++ S   K  + NR++ +  A
Sbjct: 172 RNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|315618207|gb|EFU98797.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 3431]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L S   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYSLFKKIAVKNRTQAVSWA 210


>gi|313111442|ref|ZP_07797244.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310883746|gb|EFQ42340.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 204

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTER 177
              + G + F S+   L+  ++         +      L           +    +L++R
Sbjct: 88  RCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDR 147

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E + LQ   +G T++ IA++L LS  TV+ Y     +KL+A +    I  A R   I
Sbjct: 148 EMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI 204


>gi|308176496|ref|YP_003915902.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743959|emb|CBT74931.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 220

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++   L      +     LT RE   L    +G ++ ++A++LG+   TV  ++     
Sbjct: 128 RILARALAPEPGTAKLPDGLTGREREVLDGLAEGLSNPQLAQRLGIGQSTVKTHVSQVLA 187

Query: 215 KLDAVNRIQAIAKAI 229
           KL    R+QA   A 
Sbjct: 188 KLGVSTRLQAAKIAY 202


>gi|282854807|ref|ZP_06264141.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282581953|gb|EFB87336.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314967298|gb|EFT11397.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981731|gb|EFT25824.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092496|gb|EFT64472.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
          Length = 224

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L   G+G T+ EIAE+L L+  TV  ++G    KL   +R+  +  A   
Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217

Query: 232 GYI 234
           G +
Sbjct: 218 GLV 220


>gi|255320985|ref|ZP_05362158.1| response regulator UvrY [Acinetobacter radioresistens SK82]
 gi|262379925|ref|ZP_06073080.1| response regulator [Acinetobacter radioresistens SH164]
 gi|255301949|gb|EET81193.1| response regulator UvrY [Acinetobacter radioresistens SK82]
 gi|262298119|gb|EEY86033.1| response regulator [Acinetobacter radioresistens SH164]
          Length = 211

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S    L+ERE     +  +  +++EIA+KL +SV TVN Y      KLD  + +
Sbjct: 138 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLDIDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 198 KLTHLAIRYGLI 209


>gi|149375829|ref|ZP_01893597.1| putative glycerol regulatory protein [Marinobacter algicola DG893]
 gi|149359954|gb|EDM48410.1| putative glycerol regulatory protein [Marinobacter algicola DG893]
          Length = 257

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 157 ITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                      S     +LT R+   L+    G ++++IA  L ++  TV A++ +   K
Sbjct: 174 HRRSRHEDNPISPELLNSLTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRK 233

Query: 216 LDAVNRIQAIAKA 228
           L   NR+QAI  A
Sbjct: 234 LGVHNRVQAILSA 246


>gi|56415510|ref|YP_152585.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364436|ref|YP_002144073.1| hypothetical protein SSPA3234 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129767|gb|AAV79273.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197095913|emb|CAR61490.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 200

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 102 PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQ 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 162 IGRALNISTRTVKAHLESLYRRLDVKNRTQAAMM 195


>gi|330822272|ref|YP_004362493.1| hypothetical protein bgla_1p0580 [Burkholderia gladioli BSR3]
 gi|327374109|gb|AEA65463.1| hypothetical protein bgla_1p0580 [Burkholderia gladioli BSR3]
          Length = 474

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 69/245 (28%), Gaps = 19/245 (7%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDLD 60
           +   T     S  EL   +  +  R+ A  F       +     P   +    L + D  
Sbjct: 107 DPLQTLAAVRSEAELRRTISELTTRLGAVAFCAMYVNFDPQTRQP---RTHVALVDGDRG 163

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
              +         D  L H  +   PI   +      ++ S              +   F
Sbjct: 164 FFQLYVQRRWFAIDALLTHALASNRPIYSSTTGLLENLQGSWYDMGVAARQHGLCSWAGF 223

Query: 121 PVRLG-FHKNGYVIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARN 173
           P      H  G +   S  L          E  +   G   ++    L   + R   A +
Sbjct: 224 PTHRPGTHDFGVLYLASPVLPADGGERPFQESAMYLRGLAAEIFDWQLAARRARDIEACD 283

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT----VKLDAVNRIQAIAKAI 229
              R+   L+    G T+++IA  L LS   V   L         K  + N   A   A 
Sbjct: 284 FNSRDLRVLKAVAAGNTAKDIASVLELSERDV---LKRIFPEVVAKSGSRNIRDAARYAA 340

Query: 230 RFGYI 234
             G +
Sbjct: 341 DRGLL 345


>gi|326334307|ref|ZP_08200525.1| putative two-component response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325947916|gb|EGD40038.1| putative two-component response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 224

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
               ++  +++   L   +                E    R  AA  LT RE   L+L  
Sbjct: 96  GARAWISMSADAAELVRSIER------TAAGEPINEPPSDRQGAAAGLTVREIEVLKLIT 149

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            G  ++EIA++L +S +T+ +++  A  K+    R QA++ AI  G 
Sbjct: 150 QGLPNQEIAKRLAMSGNTLKSHIRRAYRKIHVTTRSQAVSWAIAHGL 196


>gi|300782900|ref|YP_003763191.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792414|gb|ADJ42789.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            + A    + A     ++I  ++       +    LT RE   + L   G ++EEIA ++
Sbjct: 118 RVAARGDALLAPSITRKLIDRYVTQPLVPGAGLAELTNREREAVSLVARGLSNEEIAGRM 177

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S  T   ++  A +KL A +R Q +  A   G +
Sbjct: 178 VISPLTAKTHVNRAMMKLHARDRAQLVVFAYESGLV 213


>gi|238752346|ref|ZP_04613824.1| hypothetical protein yrohd0001_8030 [Yersinia rohdei ATCC 43380]
 gi|238709387|gb|EEQ01627.1| hypothetical protein yrohd0001_8030 [Yersinia rohdei ATCC 43380]
          Length = 210

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  +  IAE+L +S  TV  +  +   KLD     + I  + R G 
Sbjct: 149 LTPRERQILKLITEGSCNRIIAEQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|218508735|ref|ZP_03506613.1| two-component nodulation response regulator protein [Rhizobium etli
           Brasil 5]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTE 176
            P+ +   K G + F ++   L  + +++A  A  +        + L  +  S   +LT 
Sbjct: 86  IPISVRAMKAGAIEFLTK--PLREQELLDAAYAGIERDCARRQEVALIAELRSRYDSLTP 143

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   + L   G  +++IA ++GLS  TV  + G    K+ A + +  +  A   G 
Sbjct: 144 REREIMNLVVAGSVNKQIAAQVGLSEVTVKVHRGHVMQKMQARSLVDLVRMADGLGL 200


>gi|115372616|ref|ZP_01459923.1| two-component system regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823849|ref|YP_003956207.1| two-component system, regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370337|gb|EAU69265.1| two-component system regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396921|gb|ADO74380.1| Two-component system, regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 213

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   ++L   G ++ EIA  LG +  TV     +   KL   +R +A+ +A+  
Sbjct: 151 EGLTRRELEVMRLIARGLSNREIATVLGTAEGTVKNQTSNILAKLGVRDRTRAVLRAMEL 210

Query: 232 G 232
           G
Sbjct: 211 G 211


>gi|86360140|ref|YP_472029.1| two-component nodulation response regulator protein [Rhizobium etli
           CFN 42]
 gi|86284242|gb|ABC93302.1| two-component nodulation response regulator protein [Rhizobium etli
           CFN 42]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTE 176
            P+ +   K G + F ++   L  + +++A  A  +        + L  +  S   +LT 
Sbjct: 86  IPISVRAMKAGAIEFLTK--PLREQELLDAAYAGIERDCARRQEVALIAELRSRYDSLTP 143

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   + L   G  +++IA  +GLS  TV  + G    K+ A + +  +  A   G 
Sbjct: 144 REREIMNLVVAGSVNKQIAAHVGLSEVTVKVHRGHVMQKMQARSLVDLVRMADSLGL 200


>gi|50843473|ref|YP_056700.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289425764|ref|ZP_06427519.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289427938|ref|ZP_06429642.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|50841075|gb|AAT83742.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289153870|gb|EFD02576.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158821|gb|EFD07021.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|313763833|gb|EFS35197.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313793774|gb|EFS41805.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803088|gb|EFS44296.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808301|gb|EFS46772.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313813848|gb|EFS51562.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313817004|gb|EFS54718.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818081|gb|EFS55795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820939|gb|EFS58653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823990|gb|EFS61704.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827075|gb|EFS64789.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829809|gb|EFS67523.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313839286|gb|EFS77000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916571|gb|EFS80402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918956|gb|EFS82787.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920977|gb|EFS84808.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926967|gb|EFS90798.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932382|gb|EFS96213.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956691|gb|EFT00943.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959601|gb|EFT03703.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961786|gb|EFT05887.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964770|gb|EFT08870.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968723|gb|EFT12821.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314979700|gb|EFT23794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314988252|gb|EFT32343.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990339|gb|EFT34430.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079262|gb|EFT51265.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082275|gb|EFT54251.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083754|gb|EFT55730.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087395|gb|EFT59371.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089812|gb|EFT61788.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315100153|gb|EFT72129.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102475|gb|EFT74451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315107818|gb|EFT79794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327326525|gb|EGE68313.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327335184|gb|EGE76894.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
 gi|327449654|gb|EGE96308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455799|gb|EGF02454.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456107|gb|EGF02762.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327457944|gb|EGF04599.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757114|gb|EGF70730.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757308|gb|EGF70924.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757492|gb|EGF71108.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|332676424|gb|AEE73240.1| putative two-component response regulator [Propionibacterium acnes
           266]
          Length = 224

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L   G+G T+ EIAE+L L+  TV  ++G    KL   +R+  +  A   
Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217

Query: 232 GYI 234
           G +
Sbjct: 218 GLV 220


>gi|17233235|ref|NP_490325.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135757|dbj|BAB78303.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 218

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L+  E   + L   G++++ IAE+L ++  TV  ++     KLD  +R+ A+  A + 
Sbjct: 148 DHLSNTEMQIISLMAAGFSNKHIAEQLFITQSTVKGHINKIFAKLDVADRVNALIVASKL 207

Query: 232 GYI 234
           GYI
Sbjct: 208 GYI 210


>gi|21223862|ref|NP_629641.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|4467257|emb|CAB37582.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 1091

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 51/167 (30%), Gaps = 11/167 (6%)

Query: 77   LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE----------GGLLPFAGIAFPVRLGF 126
            L        P +W                 R+           GG    A     +RL  
Sbjct: 914  LHRARGRDTPRLWSEAVTAFECLERPYDLARVRYRLADALLAAGGDDERARATELLRLAR 973

Query: 127  HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                ++            +   A     +             + A  LT RE   L+L  
Sbjct: 974  TVADHLG-ARPLSDAVAVLGRRARLTLGRAAGPVPASGPADPADALGLTGRERDVLRLVS 1032

Query: 187  DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            DG T+ +IAE+L +S  T + ++ +   KL    R +A A A R   
Sbjct: 1033 DGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRLAL 1079


>gi|84497395|ref|ZP_00996217.1| putative LuxR-family transcriptional regulator [Janibacter sp.
           HTCC2649]
 gi|84382283|gb|EAP98165.1| putative LuxR-family transcriptional regulator [Janibacter sp.
           HTCC2649]
          Length = 972

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 8/154 (5%)

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148
           W++   E     +   + +         G  +       +    +  S     +      
Sbjct: 818 WRTNDVEPPTTEAMVQAWQESVAAFERYGHVYETARSRARLAAALRASGDAAGSRHEAEL 877

Query: 149 AHGACYQV--------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           A     ++        + D        +++  +LT RE   L+L   G ++ ++ ++L +
Sbjct: 878 ARAVATRLGAAPLLAELDDLTAPSAATAASPDHLTRREQEVLELVARGLSNGQVGQQLFI 937

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  T + ++     KL A +R QA A A   G +
Sbjct: 938 STKTASVHVSRILAKLGAASRTQAAAIARDRGLV 971


>gi|328885722|emb|CCA58961.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 221

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                     R +TERE   L+L  +G++S+EI + L +S  TV  +  +   KL   +R
Sbjct: 147 RARTGGPIPDRAITEREEEILKLVAEGHSSKEIGDLLVISPKTVERHRANLLQKLGLRDR 206

Query: 222 IQAIAKAIRFGYI 234
           ++    AIR G I
Sbjct: 207 LELTRYAIRVGLI 219


>gi|307308356|ref|ZP_07588061.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306901157|gb|EFN31764.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 213

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLT RE     L   G  +++IA+ LG S  TV A+  +   KL   +  + ++ A R G
Sbjct: 143 NLTPREFEVFGLIVRGKLNKQIAQALGTSERTVKAHRHNLMEKLGTRSLAETVSIAERLG 202

Query: 233 YI 234
            +
Sbjct: 203 LV 204


>gi|303238745|ref|ZP_07325277.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593624|gb|EFL63340.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLT+RE S ++L  DG +++EIA  + ++  +V   + +   KL+  +R Q    A++  
Sbjct: 155 NLTDRELSIIKLIVDGKSNKEIALSIFITEGSVKNIITNILEKLNLKDRTQLAVFAVKNN 214

Query: 233 YI 234
            +
Sbjct: 215 IV 216


>gi|255037324|ref|YP_003087945.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
 gi|254950080|gb|ACT94780.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + +   S    L++RE   L+L    Y++ +IA +L +S  TV  +  +   KL   N +
Sbjct: 145 MQEPAPSTRDFLSKREIEILRLVASEYSTNKIASELCISDKTVETHRRNLFQKLGVRNSV 204

Query: 223 QAIAKAIRFGYI 234
                A+R G +
Sbjct: 205 GLTKIAVRMGVV 216


>gi|237747660|ref|ZP_04578140.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379022|gb|EEO29113.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 206

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAE 196
             ++   H +      +  +  +  S  A        LT RE    +L   G +++ +A+
Sbjct: 111 PALMARLHESAVHTNPESQKNEETDSFTAAETNPLSCLTRRELEIARLVNKGCSNKAVAK 170

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +L ++  TV A+L S   KLD  +R+Q +  
Sbjct: 171 ELDIAERTVKAHLSSIFEKLDVKDRLQLVVF 201


>gi|256392927|ref|YP_003114491.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359153|gb|ACU72650.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 236

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             S     LT+RE     L  DG ++ +IA +L LS  TV  ++  A  KL A +R Q +
Sbjct: 161 HPSPLLTTLTDRERELTALVADGMSNTDIARQLTLSPLTVKTHVNHAMTKLGARDRAQLV 220

Query: 226 AKAIRFGY 233
             A + G 
Sbjct: 221 VLAYQTGL 228


>gi|24114788|ref|NP_709298.1| putative regulator [Shigella flexneri 2a str. 301]
 gi|30065198|ref|NP_839369.1| putative regulator [Shigella flexneri 2a str. 2457T]
 gi|110807384|ref|YP_690904.1| putative regulator [Shigella flexneri 5 str. 8401]
 gi|24054012|gb|AAN45005.1| putative regulator [Shigella flexneri 2a str. 301]
 gi|30043460|gb|AAP19180.1| putative regulator [Shigella flexneri 2a str. 2457T]
 gi|110616932|gb|ABF05599.1| putative regulator [Shigella flexneri 5 str. 8401]
 gi|281602877|gb|ADA75861.1| putative HTH-type transcriptional regulator yhjB [Shigella flexneri
           2002017]
 gi|313647630|gb|EFS12080.1| bacterial regulatory s, luxR family protein [Shigella flexneri 2a
           str. 2457T]
 gi|332750052|gb|EGJ80464.1| transcriptional regulator, LuxR family [Shigella flexneri K-671]
 gi|332750208|gb|EGJ80619.1| transcriptional regulator, LuxR family [Shigella flexneri 4343-70]
 gi|332751272|gb|EGJ81675.1| transcriptional regulator, LuxR family [Shigella flexneri 2747-71]
 gi|332997514|gb|EGK17130.1| transcriptional regulator, LuxR family [Shigella flexneri K-218]
 gi|333012477|gb|EGK31858.1| transcriptional regulator, LuxR family [Shigella flexneri K-304]
          Length = 200

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|89092871|ref|ZP_01165823.1| probable transcriptional regulator [Oceanospirillum sp. MED92]
 gi|89082896|gb|EAR62116.1| probable transcriptional regulator [Oceanospirillum sp. MED92]
          Length = 222

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 158 TDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                    +       +LT R+   L+    G ++++IA  L ++  TV A++ +   K
Sbjct: 139 RRSQRKDDNQIPPELLSSLTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRK 198

Query: 216 LDAVNRIQAIAKA 228
           L   NRIQA+  A
Sbjct: 199 LGVHNRIQAVLSA 211


>gi|255525021|ref|ZP_05391967.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296187376|ref|ZP_06855771.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511277|gb|EET87571.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296047898|gb|EFG87337.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 220

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             LT+RE    +L  +G ++++I + L LS  TV  Y+     KL   +R +    
Sbjct: 158 DLLTKREMDVAKLVAEGKSNKDICKVLFLSEGTVKNYVTKIFEKLQLNSRTELAVF 213


>gi|222870082|gb|EEF07213.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                GYV+  +    L   +     G  +        +  +  S    LT RE   L  
Sbjct: 212 RAGARGYVLKDAPADELLAAIQAVLAGRVFYSARIARGMAAQAVSPLDALTPRERDILHG 271

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RFGY 233
            G G  +++IA +LG+SV TV  +  +   KL    R + +  A+ + G 
Sbjct: 272 IGRGQANKDIAVQLGVSVRTVETHRLNLKRKLGIEGRAELVKYAVQQLGL 321


>gi|163802887|ref|ZP_02196775.1| excinuclease ABC subunit A [Vibrio sp. AND4]
 gi|159173294|gb|EDP58120.1| excinuclease ABC subunit A [Vibrio sp. AND4]
          Length = 214

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    + A  +LT RE   L+    G ++ ++AE L +S  T+ ++L     K+   NR+
Sbjct: 143 ISTHTAPATVDLTIRELQVLRCLQAGTSNIQMAEDLYVSESTIKSHLSQIFKKISVKNRV 202

Query: 223 QAIAKA 228
           QAIA A
Sbjct: 203 QAIAWA 208


>gi|326381846|ref|ZP_08203539.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199272|gb|EGD56453.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 210

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             +L  + +    +LT RE   + L   G T+ EIA++L +S  TV ++L     KLD  
Sbjct: 135 AAKLLTRVTDTRPSLTARELEVVVLLDAGLTNREIAKRLFISEATVKSHLVHIFDKLDVT 194

Query: 220 NRIQAIAKAIRFGYI 234
           +R + +A A + G I
Sbjct: 195 SRSKVVATARQRGLI 209


>gi|315109607|gb|EFT81583.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
          Length = 224

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L   G+G T+ EIAE+L L+  TV  ++G    KL   +R+  +  A   
Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217

Query: 232 GYI 234
           G +
Sbjct: 218 GLV 220


>gi|291300583|ref|YP_003511861.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569803|gb|ADD42768.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 222

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            + + L   + +      L+++E   L+L G G T+ +IA ++ L+  TV  Y+     K
Sbjct: 136 ALMNRLRREQSQVDPLCELSQQERKVLELIGLGLTNRQIAGRMFLAEKTVKNYVSHLLAK 195

Query: 216 LDAVNRIQAIAKAIR 230
           L   +R QA   A  
Sbjct: 196 LGMTSRTQAAVLATE 210


>gi|302549920|ref|ZP_07302262.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467538|gb|EFL30631.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA +L +   TV +++ +   KL A +R QA+  A   G
Sbjct: 156 QLTEREAEVLRLMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215

Query: 233 YI 234
           ++
Sbjct: 216 FV 217


>gi|91975978|ref|YP_568637.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682434|gb|ABE38736.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 209

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           F  + ++   E  I+A+     V    ++           LT RE   L+L   G T++E
Sbjct: 110 FRGKEIVTRVEEAIDAYSR-RSVSGKAVKAPSYIFPGKEPLTLREREVLELFASGNTNKE 168

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              +LG+S  T+  +  +   KL A N    +  
Sbjct: 169 AGRQLGISPRTIEYHRANIMKKLGARNATDLVRI 202


>gi|325104166|ref|YP_004273820.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
 gi|324973014|gb|ADY51998.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
          Length = 217

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L  +G T+ EIA KL LS  TV  +  +   K    N    I  A++ G
Sbjct: 156 ELSDRELEVLGLISEGLTNIEIANKLFLSKRTVEGHRQNLINKTKVKNSAALIKYAVKNG 215

Query: 233 YI 234
            I
Sbjct: 216 LI 217


>gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 214

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 10/138 (7%)

Query: 97  VIESSGQLSVRLEGGLLPFAGIAF-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155
            + +  +L  R++G  L        P              +    +  ++ +    A  +
Sbjct: 80  FLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKIEAQLARADRIRFQIELALQNAHPR 139

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +  +   L          LT  E         GYT+++I   L +S  TV  +L S   K
Sbjct: 140 LGREKSPL---------PLTPAEEKVFWEVIQGYTNKKIGTHLFISPRTVQTHLSSILSK 190

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L+  NR Q I  A   GY
Sbjct: 191 LELENRSQLIRYAFENGY 208


>gi|152994713|ref|YP_001339548.1| two component LuxR family transcriptional regulator [Marinomonas
           sp. MWYL1]
 gi|150835637|gb|ABR69613.1| two component transcriptional regulator, LuxR family [Marinomonas
           sp. MWYL1]
          Length = 213

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           + +LT+RE + L+    G +++EIA+ L +SV TV  +  +   KLD       I  A+ 
Sbjct: 149 SDDLTKREVAVLKALAAGLSNKEIAQLLNISVRTVETHRQNLKNKLDIHTSAGLIKYALA 208

Query: 231 FGYI 234
              I
Sbjct: 209 NQLI 212


>gi|114777603|ref|ZP_01452584.1| regulatory protein, LuxR:Response regulator receiver [Mariprofundus
           ferrooxydans PV-1]
 gi|114552074|gb|EAU54591.1| regulatory protein, LuxR:Response regulator receiver [Mariprofundus
           ferrooxydans PV-1]
          Length = 217

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 14/146 (9%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162
           ++  R+         +   +  G      +   +   +           A ++V+     
Sbjct: 69  EVMRRILLAHPEARILMLSMHSGMVAERAMQMGARGFVCKRSGARLLISAIHEVMAGRRY 128

Query: 163 LF--------------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           L               +       +LT RE     L  DG +  +IA  L LS  TV ++
Sbjct: 129 LDDETGVQLPLLHSASETLKPLPSSLTRRELEVCLLLTDGRSVSDIAAALHLSEKTVYSH 188

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL      + +  A R G +
Sbjct: 189 RQHIMEKLGVATMAELVQVATRMGIL 214


>gi|330873242|gb|EGH07391.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 910

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 846 SDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 905

Query: 231 FGYI 234
            G +
Sbjct: 906 LGLL 909


>gi|322436726|ref|YP_004218938.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164453|gb|ADW70158.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 209

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                 + ++       LT+RE   L+L  DG  +++IA  L ++  TVN ++ + + KL
Sbjct: 132 HEFAARMAER--FGDEKLTDRELDVLKLIRDGRRNKQIASDLKIAEATVNFHIKNISQKL 189

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A +R  A+  A+R G +
Sbjct: 190 QANDRTHAVMIALRRGLL 207


>gi|254384266|ref|ZP_04999609.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343154|gb|EDX24120.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTE 176
           +R G             ++ A  ++ E     +      L         +       LTE
Sbjct: 96  LRAGADGFLLKRSRPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNRGARAVLERAALTE 155

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE + L+L   G T+ EIA +L +   TV +++ +   KL A +R QA+  A   G++
Sbjct: 156 REEAVLRLMARGLTNVEIASELIVGTETVKSHVSAILAKLGARDRTQAVIMAYESGFV 213


>gi|228953499|ref|ZP_04115544.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806238|gb|EEM52812.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 500

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 413 QGMSHKIFEKFDEKKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 472

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 473 YASTAYTKLGVSNKEEAVQKALEIGII 499


>gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
 gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
          Length = 273

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +   + F       +         ++    +  K   S     T RE S LQL  +G  
Sbjct: 169 LLAEAARFADADIGQMARQITEIRSLLATGGQAKKPAGSTDLVFTPREASVLQLVAEGLM 228

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++EIA +L  S+  V  Y+    +K    +R + +  A+  G +
Sbjct: 229 NKEIARRLETSIRNVEKYVSRLFIKTGTASRTELVRYALEHGLV 272


>gi|295394806|ref|ZP_06805021.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972402|gb|EFG48262.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 202

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 8/155 (5%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLA 142
           +       E    +  + +  L         +              +             
Sbjct: 49  VDVALFDIEMPGLNGIEATRELHDKGCDTKVLIVTTFGRPGYLQRALAAGAKGFVVKDAP 108

Query: 143 NEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            E + EA        Q +   L +       +  LTERE   L +A  G +   IA+ L 
Sbjct: 109 AEELAEAIRKVHRGEQAVDPSLAIESISLGPS-PLTEREREVLAVAHTGASVRTIADSLF 167

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV  +L SA  KL   NR  A  +A + G++
Sbjct: 168 LSEGTVRNHLSSAISKLGVDNRSTAAIEAAKRGWL 202


>gi|315504459|ref|YP_004083346.1| transcriptional regulator, luxr family [Micromonospora sp. L5]
 gi|315411078|gb|ADU09195.1| transcriptional regulator, LuxR family [Micromonospora sp. L5]
          Length = 978

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +   + L          LT RE   L+L  +G+++  IAE+L +S  T + ++    
Sbjct: 885 AATLARRVGLRGTGRPGPDLLTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRII 944

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KLD  NR++A A A R G +
Sbjct: 945 AKLDVTNRVEAAALAHRLGLL 965


>gi|227508573|ref|ZP_03938622.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191905|gb|EEI71972.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 209

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++A   L+++E   L+ A DG T++EIAEKL LS  TV  YL +   KL   NR++A+  
Sbjct: 143 NAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNM 202

Query: 228 AIRFGY 233
           A    +
Sbjct: 203 AKNNKW 208


>gi|170767047|ref|ZP_02901500.1| transcriptional regulatory protein UhpA [Escherichia albertii
           TW07627]
 gi|170124485|gb|EDS93416.1| transcriptional regulatory protein UhpA [Escherichia albertii
           TW07627]
          Length = 196

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166
           A I   V             G   F S+      E+I   H         +L      K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVA--AGGCYLTPDIAVKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281564|gb|ABR89974.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 213

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +S    LT R+   L+L  DG  + EIA++LG++  TV A++ +    L  +NR QA 
Sbjct: 141 DDASLLSRLTPRQMEVLRLMCDGLRNGEIADQLGMTEKTVKAHVSAVLSGLGVLNRTQAT 200

Query: 226 AKAIRFGYI 234
             A R G +
Sbjct: 201 VVARRAGLL 209


>gi|254291301|ref|ZP_04962095.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|150422757|gb|EDN14710.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
          Length = 214

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
           RL    L   G    +       G++       ++  +  +  H +   +          
Sbjct: 89  RLRTEDLLTFGNLKGLFYANEDTGFIAH-GLGEIINGQNWLPHHVSSQLLHYYRYAFQSH 147

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +  A  +LT RE   L+    G ++ +IAE L +S  TV ++L     KL+  NR++AIA
Sbjct: 148 QVQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207

Query: 227 K 227
            
Sbjct: 208 W 208


>gi|41410415|ref|NP_963251.1| hypothetical protein MAP4317c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41399249|gb|AAS06867.1| hypothetical protein MAP_4317c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 218

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKK-RSSAARNLT 175
           L     G+V+  S    L   V   A            +V+T + +     R +A   LT
Sbjct: 97  LRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPRGAAIAELT 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L L G G ++ EIA++L +S  TV +++G    KLD  +R  AI  A   G +
Sbjct: 157 TRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215


>gi|226946038|ref|YP_002801111.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter
           vinelandii DJ]
 gi|226720965|gb|ACO80136.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter
           vinelandii DJ]
          Length = 900

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN-GYVIFTSEFLMLANEVI 146
           +W     +     +   ++     L     +   +          +   +     + E+ 
Sbjct: 758 LWAIALWQGDERDAAVATLLPALQLGQRENLLCSLTDAGRALLPLLSRCASAEAGSGELA 817

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                   ++  D        +    +L+ERE+  L+L   G +++EIA  L +SV TV 
Sbjct: 818 GYLAILRERLGGD------DCAEPPFSLSERESQTLRLVAAGQSNKEIARTLDISVETVK 871

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L +   KL   +R +A+++A     +
Sbjct: 872 WHLKNLYGKLQVTSRTRAMSRARELSLL 899


>gi|326789547|ref|YP_004307368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
 gi|326540311|gb|ADZ82170.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
          Length = 252

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 18/192 (9%)

Query: 49  QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS-GQLSVR 107
             I    N   +       +            +     + ++             +    
Sbjct: 64  SFIFSDDNSVDEYLKHYYHVDYLKY-----VSDFTKKTVTYRDTDILDEDIRKKTEFYRE 118

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV----IIE---AHGACYQVITDF 160
                    G    +       G +       +         I++    H    Q     
Sbjct: 119 FLRPKNIPYGCGIILLKEEKIIGIINLFRSSELGDFSDKDLYILDNLKLHLRNIQYHLCA 178

Query: 161 LELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            E+  K S         +L+ERE   +QL  DG ++ EI EKL +S+ TV  +  +   K
Sbjct: 179 KEIEGKESKLDSVCKQYDLSEREGEVVQLVNDGCSNSEIGEKLSISISTVKKHFYNIYNK 238

Query: 216 LDAVNRIQAIAK 227
               NR Q +  
Sbjct: 239 TGVKNRTQLLVL 250


>gi|283836093|ref|ZP_06355834.1| hypothetical protein CIT292_10512 [Citrobacter youngae ATCC 29220]
 gi|291068280|gb|EFE06389.1| transcriptional regulatory protein UhpA [Citrobacter youngae ATCC
           29220]
          Length = 197

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 12/119 (10%)

Query: 118 IAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRS 168
           I   V             G   F S+      E+I   H         +L      K  +
Sbjct: 76  IMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKLAA 132

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   +
Sbjct: 133 GRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|229522252|ref|ZP_04411668.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM
           11079-80]
 gi|229340237|gb|EEO05243.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM
           11079-80]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +    +    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALTQSE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + S+    +        V       C   + +        ++   +LT+RE     L 
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G   +EIA+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 157 VKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|256821224|ref|YP_003142423.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
 gi|256799204|gb|ACV29858.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
          Length = 197

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+RE   L+    G + + IA +L +S  T+  ++ +   KL + N ++A  KA+ 
Sbjct: 130 ADPLTKREIEVLKELIKGESKKNIAGRLYISERTLYNHIANIYDKLQSKNIVEAYNKAME 189

Query: 231 FGYI 234
            GYI
Sbjct: 190 LGYI 193


>gi|78060780|ref|YP_367355.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77965330|gb|ABB06711.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 209

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                    ++    LT+R+   L+   +G  ++ IA+KLGLS  T+ A++ +    L+ 
Sbjct: 134 ALQHPDGAAAARGSMLTQRQIEVLRYLAEGVPNKVIADKLGLSEKTIKAHITAIFKALNV 193

Query: 219 VNRIQAIAKAIRFGYI 234
           +NR QA A   + G I
Sbjct: 194 INRTQAAAAGRKAGLI 209


>gi|328883517|emb|CCA56756.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + ++A   LT RE   ++L  +G +++EIA  L +S  T   ++  A  KL   +R+Q
Sbjct: 141 RPRPAAALHALTARENEVVRLVAEGRSNDEIAAALVISPLTAKTHISRAITKLGLRDRVQ 200

Query: 224 AIAKAIRFGYI 234
            +  A   G +
Sbjct: 201 LVITAYEHGLV 211


>gi|325262648|ref|ZP_08129385.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032480|gb|EGB93758.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 206

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +RE   ++L  DG +++EIA  L LS  TV  YL S   KL+  +R Q      + 
Sbjct: 150 DRELEIIRLIADGLSNKEIASTLFLSEGTVRNYLSSILDKLELRDRTQVAVFYYQH 205


>gi|319782058|ref|YP_004141534.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167946|gb|ADV11484.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                +   +L+ RE   L L  +G  ++ IA +L +SVHT   ++ +  +KL A NR  
Sbjct: 136 ASDEHAVRPSLSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTD 195

Query: 224 AIAKAIRFGYI 234
           AIA A+R G +
Sbjct: 196 AIATAMRQGLV 206


>gi|302525216|ref|ZP_07277558.1| predicted protein [Streptomyces sp. AA4]
 gi|302434111|gb|EFL05927.1| predicted protein [Streptomyces sp. AA4]
          Length = 511

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 1/111 (0%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCL 182
           LG  +        +           A       +   L    +R       LT RE   L
Sbjct: 399 LGEPRPHRAPLAPDATARQLTAEARAGRLDPDAVNAVLAAAGRRVRRTSGGLTGREVEVL 458

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
                G ++ EIA  L +S  TV+ +L     KL    R QA   A+R G 
Sbjct: 459 LQLAQGLSNPEIAAALTVSRKTVSTHLEHIYAKLGVTTRTQAALVAMRRGL 509


>gi|167949597|ref|ZP_02536671.1| response regulator [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 181

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  ++  + L+ RET  + +  +G  ++EI++ L LS  TV+ Y      KLD  N ++ 
Sbjct: 105 RHSATPFQGLSSRETQVMLMILEGQRNQEISDGLSLSPKTVSTYRQRIYEKLDVRNDVEL 164

Query: 225 IAKAIRFGYI 234
              A R G +
Sbjct: 165 TRLAYRHGIL 174


>gi|111022239|ref|YP_705211.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821769|gb|ABG97053.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 226

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 15/155 (9%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
            +    +  +    L +         +G      L     G+++  S    L   V   A
Sbjct: 69  ATRDLRSGAQPPPVLVLTTFDDDELLSG-----SLRAGAAGFILEDSPAEDLIRAVRTVA 123

Query: 150 HGACY---QVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLG 199
            G       V    L  ++  + ++         LT RE   L L G G+++ EI  +LG
Sbjct: 124 EGGACLDPAVTGRVLATYRTVAPSSDGGRNHLTELTARELDVLALIGRGHSNSEIGRELG 183

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TV +++G   +KLD  +R  AI  A   G +
Sbjct: 184 ISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIV 218


>gi|329941026|ref|ZP_08290306.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300320|gb|EGG44218.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 227

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +R+       +   +   ++A      A G   +   D +   +        LT RE   
Sbjct: 118 IRVAAGGEALLSPAATKGLIAR---FLAQGDADEDGRDRVHAER-----LAALTGREREV 169

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G++++EIAE+L +S  TV  ++  A  KL A +R Q +  A   G +
Sbjct: 170 LVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMSKLGARDRAQLVFIAYESGLV 222


>gi|311894385|dbj|BAJ26793.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 6/137 (4%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +         +    +       +         + +   L  
Sbjct: 86  FDLDEYAFAGLAAGASGFLLKNTRPEQLLAAIRDVAAGDAVLSPRITRRLLEDVRPHLPA 145

Query: 164 F------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                  +     +  L+ RE   L   G G ++ EIA  L L+  TV ++LG    KL 
Sbjct: 146 APDHRDHRDLPDPSARLSAREHEVLVQVGRGLSNAEIAAALHLAEATVKSHLGRILPKLG 205

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R+QA+  A R G +
Sbjct: 206 LRDRVQAVVLAHRAGLV 222


>gi|307325986|ref|ZP_07605185.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888478|gb|EFN19465.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 230

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   + L G G +++EIA +L +S  T   ++    VKL   +R Q +  A   G +
Sbjct: 165 TEREREVMALVGMGLSNQEIARRLVVSPLTAKTHVSRTMVKLGVRDRAQLVVLAYESGLV 224


>gi|269954904|ref|YP_003324693.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303585|gb|ACZ29135.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 220

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                     + L++RE   ++L   G ++++IA++L LS+ TV  YL     KLD  +R
Sbjct: 144 RPDHPHPFVGKVLSQREVDVVRLVALGRSNQQIADELVLSLETVRTYLRRMFAKLDVNDR 203

Query: 222 IQAIAKAIRFGYI 234
            Q    A R G +
Sbjct: 204 TQLAVLAYRAGLL 216


>gi|237728994|ref|ZP_04559475.1| DNA-binding transcriptional activator UhpA [Citrobacter sp. 30_2]
 gi|226909616|gb|EEH95534.1| DNA-binding transcriptional activator UhpA [Citrobacter sp. 30_2]
          Length = 197

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 12/119 (10%)

Query: 118 IAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRS 168
           I   V             G   F S+      E+I   H         +L      K  +
Sbjct: 76  IMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKLAA 132

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   +
Sbjct: 133 GRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|254381629|ref|ZP_04996993.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
 gi|194340538|gb|EDX21504.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
          Length = 234

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 154 YQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            +++    +    ++     L   +ERE S L+L G+G T+ +IA++L LS  TV  ++ 
Sbjct: 142 ARLMHSLRDPEAVKAPDDDRLAALSERERSVLELIGEGLTNAQIAKRLYLSEKTVKNHIS 201

Query: 211 SATVKLDAVNRIQAIAKAIR 230
               KL    R+QA   A +
Sbjct: 202 RLLDKLGVERRVQAAVIAAQ 221


>gi|254381144|ref|ZP_04996509.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340054|gb|EDX21020.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 219

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173
           +  G           E ++ A  ++          +T  L        AA          
Sbjct: 95  LHAGASGFLVKDMALEDILSAIRIVAAGDALIAPAVTRRLIKEFTARPAASPPRRAELGA 154

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +T RE   L L G G ++ EIA +L +S+ T   YL     KLDA +R+Q +  A   G 
Sbjct: 155 ITAREREVLTLVGRGLSNTEIAGELCISIATAKTYLTRLLAKLDARDRVQLVILAYEAGL 214

Query: 234 I 234
           +
Sbjct: 215 V 215


>gi|171912646|ref|ZP_02928116.1| methyl-accepting chemotaxis sensory transducer [Verrucomicrobium
           spinosum DSM 4136]
          Length = 331

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L     +    LT RE   L+   +G ++ EI   LG+S HTV  ++     KL   NR+
Sbjct: 257 LDGSPQAPDETLTAREKEVLEWMQEGKSNPEIGVILGISTHTVKRHVERVLAKLGVENRV 316

Query: 223 QAIAK 227
            A   
Sbjct: 317 AAALY 321


>gi|170682867|ref|YP_001745790.1| LuxR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|218707149|ref|YP_002414668.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli UMN026]
 gi|293407137|ref|ZP_06651061.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298382887|ref|ZP_06992482.1| HTH-type transcriptional regulator yhjB [Escherichia coli FVEC1302]
 gi|300897310|ref|ZP_07115744.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300936733|ref|ZP_07151631.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|301025850|ref|ZP_07189340.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|170520585|gb|ACB18763.1| transcriptional regulator, LuxR family [Escherichia coli SMS-3-5]
 gi|218434246|emb|CAR15164.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli UMN026]
 gi|284923545|emb|CBG36640.1| transcriptional regulator [Escherichia coli 042]
 gi|291425948|gb|EFE98982.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298276723|gb|EFI18241.1| HTH-type transcriptional regulator yhjB [Escherichia coli FVEC1302]
 gi|300358916|gb|EFJ74786.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300395816|gb|EFJ79354.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|300458148|gb|EFK21641.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
          Length = 200

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 247

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGY 189
            S   ++A E+         + +           +         LT RE   L+   +G 
Sbjct: 141 ASPSEVVARELASIRALLSERTLATATPAQTSAPTPLPPPIKVELTPREQQVLEKVAEGL 200

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++EIA++L  SV  V  Y+     K    +R + +  A+ +G I
Sbjct: 201 MNKEIAKQLQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 245


>gi|15800094|ref|NP_286106.1| putative response regulator; hexosephosphate transport [Escherichia
           coli O157:H7 EDL933]
 gi|15829672|ref|NP_308445.1| transcription regulator [Escherichia coli O157:H7 str. Sakai]
 gi|168761556|ref|ZP_02786563.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4501]
 gi|168786197|ref|ZP_02811204.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC869]
 gi|168800234|ref|ZP_02825241.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC508]
 gi|217324617|ref|ZP_03440701.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. TW14588]
 gi|261223843|ref|ZP_05938124.1| putative transcription regulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256051|ref|ZP_05948584.1| putative transcription regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281271|ref|YP_003498089.1| putative response regulator [Escherichia coli O55:H7 str. CB9615]
 gi|12513205|gb|AAG54714.1|AE005216_2 putative response regulator; hexosephosphate transport [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359875|dbj|BAB33841.1| putative transcription regulator [Escherichia coli O157:H7 str.
           Sakai]
 gi|189368080|gb|EDU86496.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4501]
 gi|189373654|gb|EDU92070.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC869]
 gi|189377424|gb|EDU95840.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC508]
 gi|217320838|gb|EEC29262.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. TW14588]
 gi|290761144|gb|ADD55105.1| Putative response regulator [Escherichia coli O55:H7 str. CB9615]
 gi|320192773|gb|EFW67413.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC1212]
 gi|320638355|gb|EFX08069.1| putative response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320643736|gb|EFX12859.1| putative response regulator [Escherichia coli O157:H- str. 493-89]
 gi|320649086|gb|EFX17664.1| putative response regulator [Escherichia coli O157:H- str. H 2687]
 gi|320655979|gb|EFX23895.1| putative response regulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320662536|gb|EFX29925.1| putative response regulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665106|gb|EFX32199.1| putative response regulator [Escherichia coli O157:H7 str. LSU-61]
 gi|326341121|gb|EGD64913.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. 1044]
 gi|326346104|gb|EGD69843.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. 1125]
          Length = 209

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147
           I      E+   L  RL      F  I   +          +       L      E ++
Sbjct: 53  IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112

Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +A        H  C   I   L    + + A   LT RE    +L   G + +EIA KL 
Sbjct: 113 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFELLVKGDSVKEIAFKLE 171

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV+ +  +   KL+  + I+ +  A+    +
Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|158316449|ref|YP_001508957.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111854|gb|ABW14051.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 223

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERE 178
            LG       +  +  ++   + ++        +I  +L      + A       LT+RE
Sbjct: 103 FLGKGVEPDELVAAIRVVARGDALLSPQAT-RHLIEQYLRQPATPAPAVTAGLDLLTKRE 161

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              ++L   G T++EIAE+L LS  TV  +   A  K+ A +R Q +  A + G 
Sbjct: 162 NEIVRLIAYGLTNDEIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGL 216


>gi|332666500|ref|YP_004449288.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335314|gb|AEE52415.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 209

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++R+     L+ RE   LQ   +G + + IA  LG+S+ TV  ++     KL   +  +A
Sbjct: 142 QQRALELERLSPREKEILQHLANGDSQKMIAYDLGISLETVKTHIKRIYEKLQVHSLAEA 201

Query: 225 IAK 227
           IAK
Sbjct: 202 IAK 204


>gi|284991855|ref|YP_003410409.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065100|gb|ADB76038.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 248

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL-ELFKKRSSAARNLTERETSC 181
               G++  T     +   V   A G      +++T  L  L ++       LTERE   
Sbjct: 133 AGAAGFIAKTQRLDDVIEGVRAAAQGESVVNVKLLTRLLPRLHRQSGGGGAVLTEREREI 192

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L   G ++ +IA++L +SVHTV  ++ + + KL A ++++ ++ A+R G +
Sbjct: 193 LDLLARGLSNADIAQQLTISVHTVRNHVANLSAKLGAHSKLEVLSIAVRDGLV 245


>gi|257057243|ref|YP_003135075.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587115|gb|ACU98248.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
              D             +L++RE   + L G G ++ EI  +L LS  TV  Y+ +   K
Sbjct: 137 AHRDGQRASAPARELLASLSDREREVVTLIGQGLSNAEIGGRLHLSEATVKGYVSAVLSK 196

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           + A NR+QA   A R G +
Sbjct: 197 IGAANRVQAALLAYRGGLV 215


>gi|229820312|ref|YP_002881838.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566225|gb|ACQ80076.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A   +I          ++ A +L+ RE   L L   G+++ EIA +L ++  TV  ++ 
Sbjct: 133 RATRALIDRIARAAPDAAAVAADLSPRERDVLALLARGFSNAEIARELFVAESTVKTHVS 192

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           S T K+   +R+  +  A R G 
Sbjct: 193 SLTRKVGVRDRLHVVVWAYRNGI 215


>gi|146343657|ref|YP_001208705.1| CheY/LuxR family two-component transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146196463|emb|CAL80490.1| Two-component transcriptional regulator, CheY-LuxR families
           (two-component signal transduction system)
           [Bradyrhizobium sp. ORS278]
          Length = 305

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 28/56 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            LT RE   L     G T+ +IA+ LGLS  TV+ +L     KL   NR  A A A
Sbjct: 242 GLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 297


>gi|72163349|ref|YP_291006.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71917081|gb|AAZ56983.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 221

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 18/167 (10%)

Query: 83  GLLPI---IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNG 130
             +P+       +       S  ++   +       A +                    G
Sbjct: 49  SRIPVVKPDVAILDVRLPDGSGVEVCREIRSSHPDIACLMLTSFADDDALFKAVMAGAAG 108

Query: 131 YVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
           YV+       L   V   A G           + + L     +      LT +E   L L
Sbjct: 109 YVLKQIHGSDLVGAVRTVASGGSLLDPRSTGRMLERLRQNGGKPDPLAALTPQERQILDL 168

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            G+G T+ +I E+L L+  TV  Y+ S   KLD   R QA     + 
Sbjct: 169 IGEGLTNRQIGERLFLAEKTVKNYVSSLLGKLDLKRRTQAAVLVAQL 215


>gi|284045440|ref|YP_003395780.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949661|gb|ADB52405.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L     +    LT RE   L L   G ++ EI + L +   TV +++     KL   +R+
Sbjct: 150 LRPSSDARLSELTPREQEVLLLMAQGLSNREIVDALAVEETTVKSHVRRVLSKLGVRDRV 209

Query: 223 QAIAKAIRFGYI 234
            A+  A   G +
Sbjct: 210 HAVILAYESGLV 221


>gi|229591752|ref|YP_002873871.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229363618|emb|CAY50939.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 89

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            + ++ + A + LT  E   L+ A +G T  EI++    S  TV  +L +   KL+  NR
Sbjct: 17  AVRRRLNLAGKPLTPAELEILRWASEGKTVWEISQIRTTSEATVKFHLRNIYGKLEVSNR 76

Query: 222 IQAIAKAIRFGY 233
           +QA+ +A R G 
Sbjct: 77  VQAMNEAARQGL 88


>gi|256420485|ref|YP_003121138.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035393|gb|ACU58937.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L  +G T+ EIAEKL +S  TVN++      KL+  N    I  A+  
Sbjct: 145 PPLTRREKEVLSLISEGNTNAEIAEKLFISADTVNSHRKKLLAKLEVKNTAMLIKYAVDN 204

Query: 232 GYI 234
             +
Sbjct: 205 KLL 207


>gi|298244448|ref|ZP_06968254.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297551929|gb|EFH85794.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1024

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 173  NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             L+ RE   L L   G  + EIA +L +   TV A++ +   KL+  +R+QAIA+A    
Sbjct: 963  PLSWREREVLYLMATGRKNREIARELFVVTGTVKAHINNIYRKLNVNSRVQAIARAKTLH 1022

Query: 233  YI 234
             +
Sbjct: 1023 LL 1024


>gi|300088612|ref|YP_003759134.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528345|gb|ADJ26813.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 227

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 33/66 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S     L  RE   L L   G T++EIA KLGL+  TV   +G    KL+A NR QA   
Sbjct: 161 SGPEILLKSREKQVLDLIVKGLTNKEIAMKLGLAEVTVKKIIGHLLHKLNAANRTQAALA 220

Query: 228 AIRFGY 233
           A + G 
Sbjct: 221 AKQLGL 226


>gi|225020543|ref|ZP_03709735.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679908|ref|ZP_07402718.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224946673|gb|EEG27882.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660528|gb|EFM50025.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 232

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   L+L   GYT +EIA +L +S+ TV  +  +   K    NR      A
Sbjct: 167 PIVDALTRRELEVLRLLARGYTYKEIAGQLFISIKTVETHASNILRKTQQSNRHALTRWA 226

Query: 229 IRFGY 233
                
Sbjct: 227 HSRDL 231


>gi|153807885|ref|ZP_01960553.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185]
 gi|149129494|gb|EDM20708.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185]
          Length = 219

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+ E + L+    G T++EIA +  LS HT+N++  +   KL   N  +A   A+R G 
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 234 I 234
           +
Sbjct: 212 V 212


>gi|126727851|ref|ZP_01743680.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126702873|gb|EBA01977.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 232

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S   +LT ++   L+L  +G  +++IA +L ++  TV A++ +   KL   +R QA+  A
Sbjct: 161 SRLASLTNQQARILELICEGKLNKQIAFELTIAETTVKAHVTAIMRKLQVHSRTQAVLVA 220

Query: 229 IRF 231
              
Sbjct: 221 QEA 223


>gi|16762696|ref|NP_458313.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144183|ref|NP_807525.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052820|ref|ZP_03345698.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213419230|ref|ZP_03352296.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213426509|ref|ZP_03359259.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580128|ref|ZP_03361954.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647458|ref|ZP_03377511.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289824322|ref|ZP_06543915.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25298761|pir||AG0986 hypothetical luxR-family transcription regulator STY4197 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505002|emb|CAD08019.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139820|gb|AAO71385.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 200

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 102 PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 195


>gi|330988560|gb|EGH86663.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 909

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 845 SDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKV 904

Query: 231 FGYI 234
            G +
Sbjct: 905 LGLL 908


>gi|320199699|gb|EFW74289.1| Putative regulator [Escherichia coli EC4100B]
          Length = 200

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|304406021|ref|ZP_07387679.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345264|gb|EFM11100.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 201

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 4/104 (3%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           GY++  S    LA+ + I A G          EL  +       LTERE + L L  DG 
Sbjct: 100 GYLLKDSPSEELASSIRIIAGGRRLYA----PELMDEAYGEENPLTEREKAVLVLIADGK 155

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +++EI+++L ++  T+  Y+     KL   NR++AI +    G+
Sbjct: 156 STKEISKELFITTGTIRNYISVILNKLGVGNRVEAIKQFKEKGW 199


>gi|291298136|ref|YP_003509414.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567356|gb|ADD40321.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L            L++RE   ++    G T++E+A +L +S+ TV +++ S   KL
Sbjct: 136 LLSHLAPGAGEPEPDHRLSDRELEVVRAIAIGRTNQEVAAELFISLSTVKSHVSSIQAKL 195

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A NR+   A A     +
Sbjct: 196 GARNRVAIAAWAWEHRVV 213


>gi|229494594|ref|ZP_04388357.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229318956|gb|EEN84814.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 220

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                       +   RS +   L+ RE   +QL   G  + +IA+ L L   TV +++ 
Sbjct: 133 LIVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHIS 192

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL    R+Q +  A R   I
Sbjct: 193 NICKKLQVRTRVQIVIWAYRNNVI 216


>gi|256396087|ref|YP_003117651.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362313|gb|ACU75810.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 213

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L   +   A G          +L  + R  A   LT RE   L  
Sbjct: 100 AGAIGYLLKDTTREQLVEAIRGAARGETVLAPRIAAKLVARMRQPAPVVLTTREVDVLNG 159

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG ++ +I ++L ++  TV  +L     KLD  +R  A+  A+  G +
Sbjct: 160 VADGLSNADIGKRLVIAEATVKTHLLRVFAKLDVSDRTHAVVTALERGLL 209


>gi|91794445|ref|YP_564096.1| regulatory protein, LuxR [Shewanella denitrificans OS217]
 gi|91716447|gb|ABE56373.1| transcriptional regulator, LuxR family [Shewanella denitrificans
           OS217]
          Length = 222

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG--FHKNGYVIFT 135
              ++  +P++   +     +     L     G L   + +   VR      +   ++ T
Sbjct: 57  AALDNKGIPLLVSRLVNHVPV----ALYQVERGSLDQESALLLGVRGLLYADQRMDLMLT 112

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGY 189
               M+ANE+  +             +L       A        LT RE + +QL   G 
Sbjct: 113 GLRKMVANELWYDRPLISRIFRRLVQKLDANNDMPADTIAMLQMLTNRERTIIQLVSSGA 172

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            ++EIA +L +S HTV A+L S   K  + NR++ +  A
Sbjct: 173 RNKEIAHRLCISEHTVKAHLSSVFRKTQSRNRVELLRWA 211


>gi|332996217|gb|EGK15844.1| transcriptional regulator, LuxR family [Shigella flexneri VA-6]
          Length = 196

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 98  PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 158 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191


>gi|323435982|ref|ZP_01049465.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis
           MED134]
 gi|321496297|gb|EAQ39437.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis
           MED134]
          Length = 537

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              L+    + S + NL++RET  L     G+T+++I E L +S+ TV  +  +   KLD
Sbjct: 466 EQTLQESVDQISTSHNLSKRETEVLLELSKGFTNKQIGEALHISIATVKFHTSNIYAKLD 525

Query: 218 AVNRIQAIAK 227
             NR + I K
Sbjct: 526 VSNRSEVIKK 535


>gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 319

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|227486353|ref|ZP_03916669.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227235764|gb|EEI85779.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 196

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+    G T+ +IA+ L +S  T+  ++ +   KL   N+++   KA+  G
Sbjct: 132 PLTKREEEVLKALITGKTNTQIAKDLYISERTLYHHIENIYEKLKVENKVELYGKALELG 191

Query: 233 YI 234
           Y+
Sbjct: 192 YV 193


>gi|218691961|ref|YP_002400173.1| DNA-binding transcriptional activator UhpA [Escherichia coli ED1a]
 gi|218429525|emb|CAR10348.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli ED1a]
          Length = 196

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|254472068|ref|ZP_05085469.1| two component transcriptional regulator, LuxR family [Pseudovibrio
           sp. JE062]
 gi|211959270|gb|EEA94469.1| two component transcriptional regulator, LuxR family [Pseudovibrio
           sp. JE062]
          Length = 219

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K +    +LT ++   L +   G  +++IA +L +S  TV A++ +   KL   +R Q
Sbjct: 142 ATKMAQRLASLTPQQVRVLMMLSQGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQ 201

Query: 224 AIAKAIR 230
           A+  A +
Sbjct: 202 AVIAAAK 208


>gi|170782617|ref|YP_001710951.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157187|emb|CAQ02370.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 232

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAARNLTE 176
               G+V+  +E       V   A G          +V+ +F    +          LT 
Sbjct: 114 AGARGFVLKDAEPEEFIQAVRALAEGRAALDGVTTRRVMDEFTRRRVASAVHPGVEVLTP 173

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   ++L GDG +++EI  +L +   TV ++L     KL   +R+Q +    R G +
Sbjct: 174 REQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL 231


>gi|332763477|gb|EGJ93716.1| putative regulator [Shigella flexneri 2930-71]
          Length = 196

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 98  PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 158 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191


>gi|302036415|ref|YP_003796737.1| LuxR family response regulator (fragment) [Candidatus Nitrospira
           defluvii]
 gi|300604479|emb|CBK40811.1| Response regulator, LuxR family (fragment) [Candidatus Nitrospira
           defluvii]
          Length = 106

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQL   G T+  IAE+L +S+ T  A+  +   KL   N  Q +  A+
Sbjct: 37  RPEELTPREQEILQLVWAGLTNRTIAEQLHISIKTAEAHRANMMKKLRVSNIAQLLKTAL 96

Query: 230 RFGYI 234
             G +
Sbjct: 97  EEGLL 101


>gi|57864907|gb|AAW57081.1| 2-component response regulator [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 224

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L   G ++ +I +KL LS  TV  Y+ S   K +  NR + +  A+    I
Sbjct: 163 TPREVQVLNLLTTGLSNGDIGQKLHLSPRTVEKYVSSLLRKTETNNRAELVRFALDHHLI 222


>gi|328885169|emb|CCA58408.1| transcriptional regulator, LuxR family [Streptomyces venezuelae
           ATCC 10712]
          Length = 327

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 15/227 (6%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            +   ++ ++  RL  +     A + A +           ++ +      +  + +    
Sbjct: 116 AEHLDNVDDIRTRLEALAESCTAESLAFH-----PGKALTEESVEAGRPLNERAMERGVR 170

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
               Y D      +             E   E     ++ +   ++  A        G  
Sbjct: 171 FRTIYLDSV--AGDRVTRA--HAQWMAERGSEIRTSPTLPMRLLIVDTAAAVVAGLPGQA 226

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +   ++F+S+ ++LA   + EA+            L     +    LT +E   LQL   
Sbjct: 227 RPSALLFSSQPVVLAMRALFEAYWEHAS------PLDGPGDALPGGLTPQERKLLQLLAS 280

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T E +A  LG+ V T    +     +L A +R +A  +A R  +I
Sbjct: 281 GLTDEAVARALGIGVRTERRIVADLMERLGASSRFEAGVQATRREWI 327


>gi|315618449|gb|EFU99036.1| bacterial regulatory s, luxR family protein [Escherichia coli 3431]
          Length = 185

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 87  PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 146

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 147 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 180


>gi|297162582|gb|ADI12294.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 235

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDG 188
               +   ++     + A     +++  F        +       LT RE     L G G
Sbjct: 117 EHLAAAVRLVDTGDALLAPSITRRLVERFASPSAPAPAQHADLAALTPRELEVPGLLGRG 176

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ E+A +L LS  TV +++     KL   +R QA+  A   G +
Sbjct: 177 LSNAELAVELTLSEATVKSHVARIFAKLALRDRAQAVVLAYETGLV 222


>gi|300779885|ref|ZP_07089741.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533995|gb|EFK55054.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 222

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L      A   LT RE   L     G T+ EI+++L ++  TV  ++ +  VKL A +R
Sbjct: 149 ALSDYERQALSMLTAREVEVLAEIAAGATNAEISQRLFIAPTTVKTHVKNLLVKLGARDR 208

Query: 222 IQAIAKAIRFGY 233
           +  +  A R G 
Sbjct: 209 VALVLLAHRAGI 220


>gi|239994578|ref|ZP_04715102.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 225

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT+RE +  +   DG  ++EIA+ L +SV+TV  ++ S   K D  NR++ I  
Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNRVELIKW 212


>gi|225021681|ref|ZP_03710873.1| hypothetical protein CORMATOL_01709 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681258|ref|ZP_07404065.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945672|gb|EEG26881.1| hypothetical protein CORMATOL_01709 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659463|gb|EFM48963.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 200

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 140 MLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
               + +  A    +    V  + L +   R +    LT RE      A D  +  +IA 
Sbjct: 104 DTPPDELAAAVRRVHHGLRVFDNHL-VEAARRAGNNPLTPREIEICNAAKDHASVAQIAN 162

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ LS  TV  +L +   K  A N  +AI  AI  G++
Sbjct: 163 RIFLSEGTVRNHLSNVMAKTGARNYHEAIHAAITKGWL 200


>gi|260905348|ref|ZP_05913670.1| two-component system response regulator [Brevibacterium linens BL2]
          Length = 224

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            ++   E ++      Y +    L L  + +     LT+RE   L L G G +++EIA +
Sbjct: 120 RVVAEGEALLSPEVTRYLLSRMSLGLRAEPAKHLDVLTQREREVLALVGQGLSNDEIAAQ 179

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  T   ++     K+ A +R+  +  A   G +
Sbjct: 180 LVLSPLTAKTHVSRIMSKVAARDRVHLVVLAYESGLV 216


>gi|109898765|ref|YP_662020.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109701046|gb|ABG40966.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 214

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L     +   +L+ERE     +   G    +IA+ L +S  TVN +      KL+    
Sbjct: 137 ALDFSDGNPFESLSERELEITLMLTKGSKVPDIAKFLNISAKTVNTHRYRMFEKLNVSTD 196

Query: 222 IQAIAKAIRFGYI 234
           ++    A+R   I
Sbjct: 197 VELTHLALRHKLI 209


>gi|330503564|ref|YP_004380433.1| regulatory protein LuxR [Pseudomonas mendocina NK-01]
 gi|328917850|gb|AEB58681.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01]
          Length = 907

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L +  +     ++++ RE   L+L   G ++ +IA+ + LS  T+  +L +   KL  
Sbjct: 829 RRLSIDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHLHNLFSKLGV 888

Query: 219 VNRIQAIAKAIRFGYI 234
            +R QA+ K    G +
Sbjct: 889 RSRTQAVLKGKSLGLL 904


>gi|311103650|ref|YP_003976503.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758339|gb|ADP13788.1| bacterial regulatory protein, LuxR family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 212

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 126 FHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVIT-DFLELFKKRSSAARNLTERETSCL 182
               G++  ++    LA   E + EA  A   V +   L   +  ++  R LT R+   L
Sbjct: 97  AGAQGFLNKSASCQELAAALEAVSEAQPAHRSVSSSALLAGGQDEAALLRALTPRQNEVL 156

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L  DG  ++EI+E+L ++  TV  ++ +    L  +NR QA   A R G
Sbjct: 157 CLMCDGLRNKEISERLNMTEKTVKTHVSAILGTLGVLNRTQATLVARRGG 206


>gi|298252028|ref|ZP_06975831.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546620|gb|EFH80488.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1079

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query: 162  ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
             +     +    LT RE   L+L  +G ++++IA  L + + TV  ++GS   KL A +R
Sbjct: 1007 RVASASPAPVEPLTRRELEVLRLLAEGASNQQIAAVLVIQLSTVKKHVGSLLAKLGAESR 1066

Query: 222  IQAIAKAIRFGYI 234
             QA+ KA  F  +
Sbjct: 1067 TQALVKARAFSLL 1079


>gi|261250453|ref|ZP_05943028.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
 gi|260939022|gb|EEX95009.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
          Length = 211

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+    + 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207


>gi|224026836|ref|ZP_03645202.1| hypothetical protein BACCOPRO_03593 [Bacteroides coprophilus DSM
           18228]
 gi|224020072|gb|EEF78070.1| hypothetical protein BACCOPRO_03593 [Bacteroides coprophilus DSM
           18228]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  +L+   K + A   LT  E   L+    G ++++IA +  LS++TV  +  +   KL
Sbjct: 132 VAAWLKQSGKTTDAVSPLTTTEKEILRAMALGKSTKDIASERFLSIYTVMTHRKNIFRKL 191

Query: 217 DAVNRIQAIAKAIRFGYI 234
              N  +AI  A+R G +
Sbjct: 192 GVNNAHEAIRHALRSGLV 209


>gi|239817406|ref|YP_002946316.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803983|gb|ACS21050.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 224

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSAARN---LTERE 178
              +  +++ + E      +  I                + +    +S A     L+ RE
Sbjct: 108 DDAELAFLLRSIERGGAPVDSRIARRILGLFAASAQPKPIAIHPVPASLAEGKPLLSPRE 167

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L+L   G+++++IAE + LSV+T+  +  +   KL   +R QA+ +A + G 
Sbjct: 168 LKVLRLIAQGWSNQQIAEAVSLSVNTIEFHAKNIYRKLSVKSRTQAVHQATQQGL 222


>gi|217978159|ref|YP_002362306.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503535|gb|ACK50944.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 306

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +R   A  LT RE   L     G ++ +I+  L +S  TVN +L     KL   NR  A 
Sbjct: 236 QRLKEAMTLTSREAEVLVWLAAGKSNRDISAILSISPRTVNKHLEQIFRKLGVENRAAAA 295

Query: 226 AKAIR 230
             A++
Sbjct: 296 VMAVQ 300


>gi|111019249|ref|YP_702221.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110818779|gb|ABG94063.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 211

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTER 177
           +  G             L+ A   + E            + + +   ++    A  L+E+
Sbjct: 95  IMAGASGFVLKQILGTDLVAAVRTVGEGGSLLDSRATSALMNRIRSARREDPLAE-LSEQ 153

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E +  +L G+G T+ EIAE+L L+  T+  Y+     KL    R QA   A   
Sbjct: 154 ERAVFELIGEGLTNREIAERLFLAEKTIKNYVSRLLSKLGMQRRTQAAVLATEL 207


>gi|21223147|ref|NP_628926.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|29831541|ref|NP_826175.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|182436552|ref|YP_001824271.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239929430|ref|ZP_04686383.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|239979981|ref|ZP_04702505.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|239990114|ref|ZP_04710778.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|254383110|ref|ZP_04998464.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|254392007|ref|ZP_05007198.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|256785756|ref|ZP_05524187.1| putative two-component system response regulator [Streptomyces
           lividans TK24]
 gi|282860879|ref|ZP_06269945.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|289769648|ref|ZP_06529026.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|290958081|ref|YP_003489263.1| luxR family regulator [Streptomyces scabiei 87.22]
 gi|291437756|ref|ZP_06577146.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291447128|ref|ZP_06586518.1| whiK [Streptomyces roseosporus NRRL 15998]
 gi|291451838|ref|ZP_06591228.1| whiK [Streptomyces albus J1074]
 gi|294630967|ref|ZP_06709527.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|294814529|ref|ZP_06773172.1| Two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|295838473|ref|ZP_06825406.1| two-component system, regulatory protein [Streptomyces sp. SPB74]
 gi|297192634|ref|ZP_06910032.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297201810|ref|ZP_06919207.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|302519583|ref|ZP_07271925.1| whiK [Streptomyces sp. SPB78]
 gi|302536316|ref|ZP_07288658.1| whiK [Streptomyces sp. C]
 gi|302543269|ref|ZP_07295611.1| two-component system, regulatory protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302553613|ref|ZP_07305955.1| two-component system, regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302558923|ref|ZP_07311265.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|307331078|ref|ZP_07610207.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|318058051|ref|ZP_07976774.1| luxR family regulator [Streptomyces sp. SA3_actG]
 gi|318080229|ref|ZP_07987561.1| luxR family regulator [Streptomyces sp. SA3_actF]
 gi|326442919|ref|ZP_08217653.1| luxR family regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326777175|ref|ZP_08236440.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|329938172|ref|ZP_08287623.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|333026588|ref|ZP_08454652.1| putative two-component regulator [Streptomyces sp. Tu6071]
 gi|3449280|emb|CAA20424.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3618247|emb|CAA09263.1| whiK [Streptomyces coelicolor A3(2)]
 gi|29608657|dbj|BAC72710.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
 gi|178465068|dbj|BAG19588.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|194342009|gb|EDX22975.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|197695725|gb|EDY42658.1| two-component system, regulatory protein [Streptomyces sp. SPB74]
 gi|197705685|gb|EDY51497.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197717529|gb|EDY61563.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197722965|gb|EDY66873.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|260647607|emb|CBG70712.1| putative luxR family regulator [Streptomyces scabiei 87.22]
 gi|282564615|gb|EFB70151.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|289699847|gb|EFD67276.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|291340651|gb|EFE67607.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291350075|gb|EFE76979.1| whiK [Streptomyces roseosporus NRRL 15998]
 gi|291354787|gb|EFE81689.1| whiK [Streptomyces albus J1074]
 gi|292834300|gb|EFF92649.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|294327128|gb|EFG08771.1| Two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|297159676|gb|ADI09388.1| putative luxR family regulator [Streptomyces bingchenggensis BCW-1]
 gi|302428478|gb|EFL00294.1| whiK [Streptomyces sp. SPB78]
 gi|302445211|gb|EFL17027.1| whiK [Streptomyces sp. C]
 gi|302460887|gb|EFL23980.1| two-component system, regulatory protein [Streptomyces
           himastatinicus ATCC 53653]
 gi|302471231|gb|EFL34324.1| two-component system, regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302476541|gb|EFL39634.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|306883289|gb|EFN14346.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|320009036|gb|ADW03886.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
 gi|326657508|gb|EGE42354.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|328884500|emb|CCA57739.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
 gi|329302661|gb|EGG46551.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|332746440|gb|EGJ76881.1| putative two-component regulator [Streptomyces sp. Tu6071]
          Length = 203

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            GY+   +    L   V        +++    L   +  ++    LT RE   L+    G
Sbjct: 99  RGYLHKDASRAELRATVTQALADPTWRLAPRRLRSAEMGAAPT--LTAREIQVLEGMSHG 156

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EI  +L LS  TV  +      KL A +R  A+A   R+G +
Sbjct: 157 RSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202


>gi|261211265|ref|ZP_05925554.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|262190930|ref|ZP_06049145.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|260839766|gb|EEX66377.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|262033197|gb|EEY51720.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
          Length = 209

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|300776299|ref|ZP_07086157.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300501809|gb|EFK32949.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 225

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ERE   ++L     T+ EI EKL +S  TV ++      K+ A N +  +  AI
Sbjct: 156 TEDELSEREKDVVKLICQELTNNEIGEKLFISPRTVESHRQRILEKIGAKNTVGIVIYAI 215


>gi|261345362|ref|ZP_05973006.1| DNA-binding response regulator UhpA [Providencia rustigianii DSM
           4541]
 gi|282566405|gb|EFB71940.1| DNA-binding response regulator UhpA [Providencia rustigianii DSM
           4541]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 11/159 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           I    +      ES  QL  RL      F  I   +             G   + ++   
Sbjct: 48  IDVAIMDISMPDESGLQLLTRLRKKKPDFRTIILSIYDTPAFVQSALDAGASAYLTKCCG 107

Query: 141 LAN--EVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIA 195
                + +   H     +  D +   ++        + LT RE     L   G + + IA
Sbjct: 108 PEELVQAVRSVHQGGCYLCADAMRALRQTPQQQHGIQELTNREREVFDLLVSGLSVKVIA 167

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+L LS  TV+ +  +   KL   + I+ +  A+    I
Sbjct: 168 EQLNLSHKTVHVHRANVLGKLQCDSTIELVHYALEHNII 206


>gi|71280792|ref|YP_268003.1| putative nitrate/nitrite DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71146532|gb|AAZ27005.1| putative nitrate/nitrite DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
          Length = 206

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           T RE   L+L   G  ++ IA++L +SV TV  +  +   KL   + +  +  AI +G 
Sbjct: 146 TRREQLVLRLISQGLNNKRIAQELNVSVRTVETHKRNIKQKLGIDSTVGLMRYAIDYGL 204


>gi|21220239|ref|NP_626018.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256788647|ref|ZP_05527078.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289772542|ref|ZP_06531920.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|5531455|emb|CAB50960.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289702741|gb|EFD70170.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                   + R +    LT RE   L L   G ++ EIA +L ++  TV +++GS   KL
Sbjct: 138 YATRAAPVRPREAVLAGLTPREREILLLVARGLSNPEIAARLVVTEATVKSHVGSMFAKL 197

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+  A     +
Sbjct: 198 HLRDRAQAVVFAYENAIV 215


>gi|121725788|ref|ZP_01679088.1| transcriptional regulator UhpA [Vibrio cholerae V52]
 gi|147671836|ref|YP_001215461.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|153211907|ref|ZP_01947754.1| transcriptional regulator UhpA [Vibrio cholerae 1587]
 gi|153830962|ref|ZP_01983629.1| transcriptional regulator UhpA [Vibrio cholerae 623-39]
 gi|229528490|ref|ZP_04417881.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)]
 gi|254285705|ref|ZP_04960668.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226]
 gi|262168530|ref|ZP_06036226.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27]
 gi|262191666|ref|ZP_06049843.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT
           5369-93]
 gi|121631553|gb|EAX63921.1| transcriptional regulator UhpA [Vibrio cholerae V52]
 gi|124116983|gb|EAY35803.1| transcriptional regulator UhpA [Vibrio cholerae 1587]
 gi|146314219|gb|ABQ18759.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|148873558|gb|EDL71693.1| transcriptional regulator UhpA [Vibrio cholerae 623-39]
 gi|150424202|gb|EDN16140.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226]
 gi|227015255|gb|ACP11464.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|229334852|gb|EEO00338.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)]
 gi|262023059|gb|EEY41764.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27]
 gi|262032455|gb|EEY51016.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT
           5369-93]
 gi|327485694|gb|AEA80100.1| Transcriptional regulatory protein UhpA [Vibrio cholerae LMA3894-4]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +    +    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALTQAE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + S+    +        V       C   + +        ++   +LT+RE     L 
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G   +EIA+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 157 VQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|223939687|ref|ZP_03631560.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891644|gb|EEF58132.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSE 192
           +S+ L    +V         Q+    ++ F K    S    L+  E   LQL   GY  +
Sbjct: 109 SSKLLEAVRDVHAGGSPMSPQLARRLVQFFSKPQDVSPVSQLSPGEREFLQLLSKGYVYK 168

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           EIAEK+G+S  TV  Y+ +   KL   +R +A+ K
Sbjct: 169 EIAEKMGISTDTVRYYVRTVYEKLHVHSRTEAVVK 203


>gi|87120553|ref|ZP_01076447.1| putative regulator in two-component regulatory system; LuxR family
           protein [Marinomonas sp. MED121]
 gi|86164196|gb|EAQ65467.1| putative regulator in two-component regulatory system; LuxR family
           protein [Marinomonas sp. MED121]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT  +   L    +G  +++IA +L +S  TV A++ +   KL   NR QA+  A    
Sbjct: 150 ELTPSQYKVLCYLHEGLLNKQIAYELNISEATVKAHITAIFKKLSINNRTQAVLIASELK 209

Query: 233 Y 233
            
Sbjct: 210 L 210


>gi|328887358|emb|CCA60597.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 226

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 20/137 (14%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-------------- 163
           +              +       L  ++ ++   A  +V+     L              
Sbjct: 87  VVLTTFDDDDHVYGALHAGASGFLVKDMALDDILAAVRVVAAGDALIAPGVTRRLIKEFT 146

Query: 164 FKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            + R++ A        +T+RE   L L G G ++ E+A +L +SV T   Y+     KL+
Sbjct: 147 DRPRTAPAVPRRRAEGITDREREVLTLVGRGLSNTEVAAELHISVATAKTYVTRLLAKLN 206

Query: 218 AVNRIQAIAKAIRFGYI 234
           A +R+Q +  A   G +
Sbjct: 207 ARDRVQLVIIAYEAGLV 223


>gi|292491684|ref|YP_003527123.1| LuxR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580279|gb|ADE14736.1| regulatory protein LuxR [Nitrosococcus halophilus Nc4]
          Length = 229

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            + A     Q   +  +  ++  +    LT RE   ++L   G  ++ IA +LG+S+ TV
Sbjct: 138 RLWACMEKDQYARENKKKQEEIIARMARLTPREWEVMELVVKGRLNKVIAFELGISLKTV 197

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235
             +      KL    +   I  A     +C
Sbjct: 198 ENHRAQVMKKLQVKTQADLIRLA----LLC 223


>gi|262376982|ref|ZP_06070208.1| response regulator [Acinetobacter lwoffii SH145]
 gi|262308020|gb|EEY89157.1| response regulator [Acinetobacter lwoffii SH145]
          Length = 211

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S    L+ERE     +  +  +++EIA+KL +SV TVN Y      KL+  + +
Sbjct: 138 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLNIDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    A+R+G I
Sbjct: 198 KLTHLAMRYGLI 209


>gi|262273261|ref|ZP_06051076.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
 gi|262222634|gb|EEY73944.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
          Length = 212

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +       +LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR Q
Sbjct: 141 EESLMDKISSLTPQQYKVLNMLNDGLLNKQIAYELDVSEATIKAHMTAIFRKLGVKNRTQ 200

Query: 224 AIAK 227
           A+  
Sbjct: 201 AVIL 204


>gi|114571288|ref|YP_757968.1| two component LuxR family transcriptional regulator [Maricaulis
           maris MCS10]
 gi|114341750|gb|ABI67030.1| two component transcriptional regulator, LuxR family [Maricaulis
           maris MCS10]
          Length = 201

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +NG   F  + +     V         QV +         +  A +LT RE   L     
Sbjct: 95  ENGARGFIPKTMPADGLVAAVRLILAGQVFSPIHHTTDPENEPA-SLTPREREVLFCLQR 153

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G  ++EIA  L +   TV  +L S ++KLDA NR + + KAI+ G++
Sbjct: 154 GEANKEIARSLEIQETTVKLHLRSLSLKLDARNRTEVVVKAIQAGFL 200


>gi|74318482|ref|YP_316222.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057977|gb|AAZ98417.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 221

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   S    LT RE   L     G +++ IA  L +S  TV  ++     KL+  +R++A
Sbjct: 144 QDAGSLLDALTPREREILSHLSRGESNKAIARTLDISHDTVKLHVRHILAKLNLSSRVEA 203

Query: 225 IAKAIRF 231
              A+  
Sbjct: 204 AVFAVEH 210


>gi|16125402|ref|NP_419966.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234145|ref|YP_002516581.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13422468|gb|AAK23134.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963317|gb|ACL94673.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 201

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LT+RE   L+LA +G ++++IA+ L LS  TV  YL  A  KL A NR++A   A
Sbjct: 136 AEPDPLTDREREILRLAEEGRSNKDIADVLDLSPGTVRNYLSEAAQKLGAANRVEAGRIA 195

Query: 229 IRFGYI 234
              G++
Sbjct: 196 RSNGWL 201


>gi|16263379|ref|NP_436172.1| Two-component response regulator [Sinorhizobium meliloti 1021]
 gi|307321169|ref|ZP_07600572.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|14524065|gb|AAK65584.1| Two-component response regulator [Sinorhizobium meliloti 1021]
 gi|306893160|gb|EFN23943.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 213

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLT RE     L   G  +++IA+ LG S  TV A+  +   KL   +  + ++ A R G
Sbjct: 143 NLTPREFEVFGLIVRGKLNKQIAQALGTSERTVKAHRHNLMEKLGTRSLAETVSIAERLG 202

Query: 233 YI 234
            +
Sbjct: 203 LV 204


>gi|254230090|ref|ZP_04923487.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262392985|ref|YP_003284839.1| transcriptional regulator LuxR family [Vibrio sp. Ex25]
 gi|151937379|gb|EDN56240.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262336579|gb|ACY50374.1| transcriptional regulator LuxR family [Vibrio sp. Ex25]
          Length = 209

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +     LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+
Sbjct: 142 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 201

Query: 226 AK 227
             
Sbjct: 202 IM 203


>gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 227

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L+L   G ++ ++  +L LS  TV  Y+ S   K    NR + +  A++ G
Sbjct: 165 SLTHREQEVLELLTHGLSNADMGHQLHLSPRTVEKYVSSLLRKTSTSNRAELVRFAMKHG 224

Query: 233 YI 234
            +
Sbjct: 225 LV 226


>gi|299137741|ref|ZP_07030922.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600382|gb|EFI56539.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 212

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 44/88 (50%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +    A ++ +   +           +L++RE   LQL   G ++ EIAE+L +   TV 
Sbjct: 123 LYRVHAGHRFLPQVVSQALSSRVPGSHLSQREQEVLQLLFAGKSNREIAEELAIKEATVK 182

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +++    ++L+  +R QA+ + ++ G +
Sbjct: 183 SHVSVILMRLNVSDRTQAVVEGLKRGLV 210


>gi|298244504|ref|ZP_06968310.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551985|gb|EFH85850.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 232

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 51/113 (45%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +RL    N         +++ ++++        +          +   ++ +LTERE   
Sbjct: 110 IRLDTLLNAIRAAARGEILMQSDIMARLLSYTTKSAPFEPRASNQSHQSSIDLTEREREV 169

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G  S++IA  LG++  TV AYL S   KL+  +R  AI  AIR+G +
Sbjct: 170 LIAVARGDRSKDIARHLGIAERTVRAYLTSIYTKLNVTSRASAITVAIRYGIL 222


>gi|289668036|ref|ZP_06489111.1| transcriptional regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 923

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L           +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 827 RALTIQALLERLSGDDDPTCDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKN 886

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A+  G +
Sbjct: 887 LYRKLDARSRENALAQALERGLL 909


>gi|295690124|ref|YP_003593817.1| LuxR family two component transcriptional regulator [Caulobacter
           segnis ATCC 21756]
 gi|295432027|gb|ADG11199.1| two component transcriptional regulator, LuxR family [Caulobacter
           segnis ATCC 21756]
          Length = 201

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 39/66 (59%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LT+RE   L+LA +G ++++IAE L LS  TV  YL  A  KL A NR++A   A
Sbjct: 136 AEPDPLTDREREILRLAEEGRSNKDIAEVLELSPGTVRNYLSEAAQKLGAANRVEAGRIA 195

Query: 229 IRFGYI 234
              G++
Sbjct: 196 RSNGWL 201


>gi|212635701|ref|YP_002312226.1| regulatory protein LuxR [Shewanella piezotolerans WP3]
 gi|212557185|gb|ACJ29639.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3]
          Length = 211

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +  LT RE   LQ+   G T+ +IA +L +S  T+  +L  A  K+   +R QAIA A
Sbjct: 145 SDTLTMREREVLQVLRSGSTNIDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202


>gi|190895071|ref|YP_001985364.1| two-component nodulation response regulator protein [Rhizobium etli
           CIAT 652]
 gi|218513916|ref|ZP_03510756.1| two-component nodulation response regulator protein [Rhizobium etli
           8C-3]
 gi|190700732|gb|ACE94814.1| two-component nodulation response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTE 176
            P+ +   K G + F ++   L  + +++A  A  +        + L  +  S   +LT 
Sbjct: 86  IPISVRAMKAGAIEFLTK--PLREQELLDAAYAGIERDCARRQEVALIAELRSRYDSLTP 143

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   + L   G  +++IA ++GLS  TV  + G    K+ A + +  +  A   G 
Sbjct: 144 REREIMNLVVAGSVNKQIAAQVGLSEVTVKVHRGHVMQKMQARSLVDLVRMADGLGL 200


>gi|157146272|ref|YP_001453591.1| DNA-binding transcriptional regulator CsgD [Citrobacter koseri ATCC
           BAA-895]
 gi|157083477|gb|ABV13155.1| hypothetical protein CKO_02029 [Citrobacter koseri ATCC BAA-895]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|160894495|ref|ZP_02075271.1| hypothetical protein CLOL250_02047 [Clostridium sp. L2-50]
 gi|156863806|gb|EDO57237.1| hypothetical protein CLOL250_02047 [Clostridium sp. L2-50]
          Length = 500

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+ E    +L   G ++++IA +LG    TV  +  +   KL    R +A+ +    
Sbjct: 438 EPLTQMEEKVFRLMAQGLSNDDIARQLGKKTGTVKFHSCNIFRKLQVPTRQEAVERGREI 497

Query: 232 GYI 234
           G +
Sbjct: 498 GLL 500


>gi|118470159|ref|YP_884886.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171446|gb|ABK72342.1| transcriptional regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 272

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               ++     L  +R  A   L  T RE   L++   G T+ EIAE+L ++VHTV +++
Sbjct: 182 VSAILLRRLSTLAAQREPAPTELVLTRREIEILRMLEAGRTNREIAEQLCIAVHTVKSHV 241

Query: 210 GSATVKLDAVNRIQAIAK 227
            +   KL    R QA A 
Sbjct: 242 HNLLAKLGVSTRAQAAAL 259


>gi|254254306|ref|ZP_04947623.1| Transcriptional regulator LuxR family [Burkholderia dolosa AUO158]
 gi|124898951|gb|EAY70794.1| Transcriptional regulator LuxR family [Burkholderia dolosa AUO158]
          Length = 251

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 54/235 (22%), Gaps = 24/235 (10%)

Query: 14  LQELSPRLHLIQNRIKA----RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
             +    L    +   A         Y ++ +   P   +L     +           L 
Sbjct: 13  AADWHRALRACVDAFDAFASPSAVVFYRLDDS-GEPADFELFGMPESMHRAYVARYRTLD 71

Query: 70  ETYGDDFLFHFN------------SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117
             +                            W             ++ +R  G  +    
Sbjct: 72  PLHPSRCAAGARAVVTLASELPDERRDASAYWTRFLRRHGAADVVEIWLRDAGRTVGAFS 131

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLAN-----EVIIEAHGACYQVITDFLELFKK--RSSA 170
           +                  +           + +          +   L   +   R   
Sbjct: 132 LLRFATDRARGRAACTGADDGTTARFAPGEIDALARLQPVAEAALGPLLRARRGIHRIGC 191

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++EIA  L L   TV  +L     KL   NR   +
Sbjct: 192 EARLTYREEQIARLVRDGRSNKEIARDLALGQPTVKTHLMRMYRKLGVSNRTGLV 246


>gi|108802949|ref|YP_642886.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764192|gb|ABG03074.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 222

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +      +   +++ + + E      +   +   L +     A  LT RE   LQ   +G
Sbjct: 115 DAARRLAAGEPLMSPQEVAEMIRLAGRSREEERGLREN----AARLTPREREVLQALAEG 170

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ EIAE+L +SV T   ++ +   KL A +R+QA+  A R G +
Sbjct: 171 LSNREIAERLHMSVDTERTHMVNILSKLGAHSRLQALVLAARAGVV 216


>gi|302531199|ref|ZP_07283541.1| predicted protein [Streptomyces sp. AA4]
 gi|302440094|gb|EFL11910.1| predicted protein [Streptomyces sp. AA4]
          Length = 295

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 21/117 (17%)

Query: 139 LMLANEVIIEAHGACYQ-------VITDFLELFKKRSSA--------------ARNLTER 177
             + +  + EA    +         ++      K+  S               A  L+ R
Sbjct: 156 RAVDSRRLAEAVRRAHHDRRYIDPALSALTARPKREPSPRAAPVDGQLVQPKGAMPLSRR 215

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   LQL  +G  +  IA+ L LSV TV  ++ S   KL A +R  A+  A R G +
Sbjct: 216 EYQVLQLVAEGLENSGIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRSGIL 272


>gi|271966618|ref|YP_003340814.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509793|gb|ACZ88071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 9/189 (4%)

Query: 46  RRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS 105
             ++ +  +     D   +   + +  G +      +   P     +    V E+     
Sbjct: 36  DGREAVALVERLRPDVVLMDVRMPDVDGLEATRRIVASGSPARVVILTTYDVDEAVFAAL 95

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
                  L        VR         +      +LA  V          V+ D      
Sbjct: 96  RAGASAFLLKD-----VRPAELVEAVRVVARGDALLAPSVTRRLLDRFASVLPD----PA 146

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              +    L+ERE   L+L     ++ EIAE+L L+  TV  ++ +   KL   +R+QA+
Sbjct: 147 GPPADLGRLSEREVEVLRLVALALSNAEIAERLVLTEATVKTHVSAVLRKLGLRDRVQAV 206

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 207 VLAYDVGLV 215


>gi|92112994|ref|YP_572922.1| two component LuxR family transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91796084|gb|ABE58223.1| two component transcriptional regulator, LuxR family
           [Chromohalobacter salexigens DSM 3043]
          Length = 220

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++ +  E   + + A  +LT ++   L +  +G  +++IA +L +S  T+ A++ +   K
Sbjct: 136 ILGESNEEEARFAEAIASLTPQQFRVLNMLNEGLLNKQIAYELNVSEATIKAHVTAILRK 195

Query: 216 LDAVNRIQAIAKAIRF 231
           L   +R QA+  A + 
Sbjct: 196 LGVHSRTQAVIAAQKL 211


>gi|302869068|ref|YP_003837705.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302571927|gb|ADL48129.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 978

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +   + L          LT RE   L+L  +G+++  IAE+L +S  T + ++    
Sbjct: 885 AATLARRVGLRGTGRPGPDLLTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRII 944

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KLD  NR++A A A R G +
Sbjct: 945 AKLDVTNRVEAAALAHRLGLL 965


>gi|256392814|ref|YP_003114378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359040|gb|ACU72537.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 525

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               +R +    LT RE   L+L   G ++ EIAE+L +S  TV+ ++     K    NR
Sbjct: 450 HRATRRPAWPGGLTRREVQVLRLLARGLSNGEIAEQLVISRKTVSHHVEHIYAKTGTANR 509

Query: 222 IQAIAKAIRFGY 233
             A   A+R G 
Sbjct: 510 AMAGLYAVRHGL 521


>gi|21219837|ref|NP_625616.1| multidomain-containing protein family [Streptomyces coelicolor
           A3(2)]
 gi|8977921|emb|CAB95788.1| putative multi-domain regulatory protein [Streptomyces coelicolor
           A3(2)]
          Length = 780

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 40/122 (32%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
              +         +   + LG     +    +    L    +I+                
Sbjct: 649 LWGVRALSAQHTQVENTLMLGLGAERFTQVYTFGTRLPVPQLIDVACGNAHADDAAPPRH 708

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               S    LT RE     L G+G T+ +IAE+L +S  T + ++     KL   +R Q 
Sbjct: 709 PHDGSPLGPLTPREREVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQI 768

Query: 225 IA 226
            A
Sbjct: 769 AA 770


>gi|16131392|ref|NP_417977.1| predicted two-component system response regulator, LuxR-like HTH
           domain, function unknown [Escherichia coli str. K-12
           substr. MG1655]
 gi|74314226|ref|YP_312645.1| putative regulator [Shigella sonnei Ss046]
 gi|82545884|ref|YP_409831.1| regulator [Shigella boydii Sb227]
 gi|89110493|ref|AP_004273.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli str. K-12 substr.
           W3110]
 gi|157155556|ref|YP_001464990.1| LuxR family transcriptional regulator [Escherichia coli E24377A]
 gi|157162999|ref|YP_001460317.1| LuxR family transcriptional regulator [Escherichia coli HS]
 gi|170018251|ref|YP_001723205.1| two component LuxR family transcriptional regulator [Escherichia
           coli ATCC 8739]
 gi|170083031|ref|YP_001732351.1| DNA-binding response regulator in two-component regulatory system
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187732835|ref|YP_001882209.1| LuxR family transcriptional regulator [Shigella boydii CDC 3083-94]
 gi|188493563|ref|ZP_03000833.1| transcriptional regulator, LuxR family [Escherichia coli 53638]
 gi|191165327|ref|ZP_03027170.1| transcriptional regulator, LuxR family [Escherichia coli B7A]
 gi|193068515|ref|ZP_03049477.1| transcriptional regulator, LuxR family [Escherichia coli E110019]
 gi|194431218|ref|ZP_03063511.1| transcriptional regulator, LuxR family [Shigella dysenteriae 1012]
 gi|194435746|ref|ZP_03067849.1| transcriptional regulator, LuxR family [Escherichia coli 101-1]
 gi|218556070|ref|YP_002388983.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli IAI1]
 gi|218697229|ref|YP_002404896.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli 55989]
 gi|218702285|ref|YP_002409914.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli IAI39]
 gi|238902609|ref|YP_002928405.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|253771649|ref|YP_003034480.1| LuxR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038698|ref|ZP_04872754.1| transcriptional regulator [Escherichia sp. 1_1_43]
 gi|254163442|ref|YP_003046550.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli B str. REL606]
 gi|260857624|ref|YP_003231515.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli O26:H11 str. 11368]
 gi|260870246|ref|YP_003236648.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli O111:H- str. 11128]
 gi|291284892|ref|YP_003501710.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293416965|ref|ZP_06659602.1| HTH-type transcriptional regulator yhjB [Escherichia coli B185]
 gi|293453825|ref|ZP_06664244.1| HTH-type transcriptional regulator yhjB [Escherichia coli B088]
 gi|297516998|ref|ZP_06935384.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           OP50]
 gi|300815266|ref|ZP_07095491.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300822085|ref|ZP_07102228.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300907585|ref|ZP_07125221.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300916753|ref|ZP_07133464.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|300922344|ref|ZP_07138466.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300927986|ref|ZP_07143543.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|300950857|ref|ZP_07164739.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300955003|ref|ZP_07167413.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301028224|ref|ZP_07191493.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|301306826|ref|ZP_07212876.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|301326665|ref|ZP_07219992.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|301646057|ref|ZP_07245962.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|307140209|ref|ZP_07499565.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           H736]
 gi|309796157|ref|ZP_07690568.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331644228|ref|ZP_08345357.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H736]
 gi|331655145|ref|ZP_08356144.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           M718]
 gi|331659827|ref|ZP_08360765.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA206]
 gi|331665140|ref|ZP_08366041.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA143]
 gi|331679596|ref|ZP_08380266.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H591]
 gi|331685175|ref|ZP_08385761.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H299]
 gi|586682|sp|P37640|YHJB_ECOLI RecName: Full=Putative HTH-type transcriptional regulator yhjB
 gi|466657|gb|AAB18496.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]
 gi|1789937|gb|AAC76545.1| predicted two-component system response regulator, LuxR-like HTH
           domain, function unknown [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857703|gb|AAZ90410.1| putative regulator [Shigella sonnei Ss046]
 gi|81247295|gb|ABB68003.1| putative regulator [Shigella boydii Sb227]
 gi|85676524|dbj|BAE77774.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli str. K12 substr.
           W3110]
 gi|157068679|gb|ABV07934.1| transcriptional regulator, LuxR family [Escherichia coli HS]
 gi|157077586|gb|ABV17294.1| transcriptional regulator, LuxR family [Escherichia coli E24377A]
 gi|169753179|gb|ACA75878.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|169890866|gb|ACB04573.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187429827|gb|ACD09101.1| transcriptional regulator, LuxR family [Shigella boydii CDC
           3083-94]
 gi|188488762|gb|EDU63865.1| transcriptional regulator, LuxR family [Escherichia coli 53638]
 gi|190904729|gb|EDV64435.1| transcriptional regulator, LuxR family [Escherichia coli B7A]
 gi|192958166|gb|EDV88607.1| transcriptional regulator, LuxR family [Escherichia coli E110019]
 gi|194420673|gb|EDX36749.1| transcriptional regulator, LuxR family [Shigella dysenteriae 1012]
 gi|194425289|gb|EDX41273.1| transcriptional regulator, LuxR family [Escherichia coli 101-1]
 gi|209755518|gb|ACI76071.1| putative regulator [Escherichia coli]
 gi|209755524|gb|ACI76074.1| putative regulator [Escherichia coli]
 gi|218353961|emb|CAV00418.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli 55989]
 gi|218362838|emb|CAR00468.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli IAI1]
 gi|218372271|emb|CAR20134.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli IAI39]
 gi|226839204|gb|EEH71227.1| transcriptional regulator [Escherichia sp. 1_1_43]
 gi|238862250|gb|ACR64248.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli BW2952]
 gi|242379039|emb|CAQ33838.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli BL21(DE3)]
 gi|253322693|gb|ACT27295.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975343|gb|ACT41014.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli B str. REL606]
 gi|253979499|gb|ACT45169.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli BL21(DE3)]
 gi|257756273|dbj|BAI27775.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|257766602|dbj|BAI38097.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|260447465|gb|ACX37887.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|290764765|gb|ADD58726.1| Putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291321951|gb|EFE61382.1| HTH-type transcriptional regulator yhjB [Escherichia coli B088]
 gi|291431541|gb|EFF04526.1| HTH-type transcriptional regulator yhjB [Escherichia coli B185]
 gi|299878710|gb|EFI86921.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|300318045|gb|EFJ67829.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300400702|gb|EFJ84240.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300415975|gb|EFJ99285.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|300421284|gb|EFK04595.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300449833|gb|EFK13453.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300463993|gb|EFK27486.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|300525448|gb|EFK46517.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300532158|gb|EFK53220.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300837945|gb|EFK65705.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|300846669|gb|EFK74429.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|301075728|gb|EFK90534.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|308120218|gb|EFO57480.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|309703926|emb|CBJ03267.1| transcriptional regulator [Escherichia coli ETEC H10407]
 gi|315138096|dbj|BAJ45255.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           DH1]
 gi|315252577|gb|EFU32545.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|315295796|gb|EFU55113.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3]
 gi|320182580|gb|EFW57470.1| Putative regulator [Shigella boydii ATCC 9905]
 gi|320183472|gb|EFW58321.1| Putative regulator [Shigella flexneri CDC 796-83]
 gi|320639836|gb|EFX09430.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645336|gb|EFX14352.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650647|gb|EFX19113.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O157:H- str. H 2687]
 gi|320655841|gb|EFX23764.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661623|gb|EFX29038.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666646|gb|EFX33629.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154025|gb|EFZ40231.1| bacterial regulatory s, luxR family protein [Escherichia coli
           EPECa14]
 gi|323174168|gb|EFZ59796.1| transcriptional regulator, LuxR family protein [Escherichia coli
           LT-68]
 gi|323179531|gb|EFZ65098.1| transcriptional regulator, LuxR family [Escherichia coli 1180]
 gi|323182990|gb|EFZ68391.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1357]
 gi|323939500|gb|EGB35709.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|323944483|gb|EGB40556.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           H120]
 gi|323971378|gb|EGB66617.1| luxR family protein regulatory protein [Escherichia coli TA007]
 gi|323975078|gb|EGB70187.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|324116609|gb|EGC10526.1| luxR family protein regulatory protein [Escherichia coli E1167]
 gi|331036522|gb|EGI08748.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H736]
 gi|331047160|gb|EGI19238.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           M718]
 gi|331053042|gb|EGI25075.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA206]
 gi|331057650|gb|EGI29636.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA143]
 gi|331072768|gb|EGI44093.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H591]
 gi|331077546|gb|EGI48758.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H299]
 gi|332084020|gb|EGI89227.1| transcriptional regulator, LuxR family [Shigella dysenteriae
           155-74]
 gi|332084586|gb|EGI89780.1| transcriptional regulator, LuxR family [Shigella boydii 5216-82]
 gi|332095823|gb|EGJ00831.1| transcriptional regulator, LuxR family [Shigella boydii 3594-74]
 gi|332345483|gb|AEE58817.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 200

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|84497905|ref|ZP_00996702.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
 gi|84381405|gb|EAP97288.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
          Length = 218

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAG 186
                       +      +   G   Q+I +  +  +    S    L++RE   LQL G
Sbjct: 104 DFPAQQIIESLRLAHRGQALIPLGMSSQLIRELSQPRQTPGESTTPRLSDRELGVLQLVG 163

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            G  ++EIA +L +S +TV  ++ +   KL+  +RI+        
Sbjct: 164 QGKGNKEIAAQLFISQNTVKNHIQNIRNKLNVGSRIELAMHGAEQ 208


>gi|315502130|ref|YP_004081017.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315408749|gb|ADU06866.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 220

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 32/84 (38%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+                LT RE   L   G G ++ EI + L LS  T   Y+ 
Sbjct: 132 AVTRRVLAAAARSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQALFLSPDTARTYVS 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+A +R Q +  A   G +
Sbjct: 192 RLLQKLNARDRAQLVVIAYESGLV 215


>gi|153800849|ref|ZP_01955435.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3]
 gi|124123559|gb|EAY42302.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +    +    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALTQAE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + S+    +        V       C   + +        ++    LT+RE     L 
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLAELTKREVEVFDLL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G   +EIA+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 157 VKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|77457134|ref|YP_346639.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens
           Pf0-1]
 gi|77381137|gb|ABA72650.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 850

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 143 NEVIIEAHGACYQV-----ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            +++ E +  C ++     I +  E   ++S+    L++RE   LQL   G ++ +IAEK
Sbjct: 754 QQMLAELYIRCVEMPSRWRIDEAAEQVDEQSTTINPLSQRELKVLQLIAFGDSNLQIAEK 813

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +S+HTV  ++     KL    R QA+AKA     
Sbjct: 814 LFISLHTVKTHVRRIHSKLGVERRTQAVAKAKLLNL 849


>gi|51894231|ref|YP_076922.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857920|dbj|BAD42078.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 211

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                +A   +         ++         +      L  ++ + ++L   GYT+ EIA
Sbjct: 114 RSIRAVARGEVAMDPKVVGYLMQQMRSPSADKEERI-PLNRQQLAIIRLVAQGYTNREIA 172

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E++ LS  TV  YL  A  ++   NR++A   A + G+I
Sbjct: 173 ERMFLSEKTVKGYLAEAMRRMGVKNRVEAAMVASKNGWI 211


>gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0101]
          Length = 248

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           K+ ++     T RE S LQL  +G  ++EIA +L  S+  V  Y+     K    +R + 
Sbjct: 178 KQSAAVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTEL 237

Query: 225 IAKAIRFGYI 234
           +  A+  G +
Sbjct: 238 VRYALEHGLV 247


>gi|297162504|gb|ADI12216.1| LuxR family two-component response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 157 ITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           +   L                L+ RE   L L G+G T+ EI ++L LS  TV  ++   
Sbjct: 130 LMSTLRGESAEPQPRDESLAGLSTREREILTLIGEGMTNREIGKRLYLSEKTVKNHISRL 189

Query: 213 TVKLDAVNRIQAIAKA 228
             KL    R+QA   A
Sbjct: 190 LSKLGVERRVQAAVIA 205


>gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606]
          Length = 319

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|218707313|ref|YP_002414832.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           UMN026]
 gi|293407309|ref|ZP_06651231.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           FVEC1412]
 gi|298383051|ref|ZP_06992646.1| transcriptional regulatory protein uhpA [Escherichia coli FVEC1302]
 gi|331665313|ref|ZP_08366214.1| transcriptional regulatory protein UhpA [Escherichia coli TA143]
 gi|218434410|emb|CAR15338.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli UMN026]
 gi|291425600|gb|EFE98636.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           FVEC1412]
 gi|298276887|gb|EFI18405.1| transcriptional regulatory protein uhpA [Escherichia coli FVEC1302]
 gi|331057823|gb|EGI29809.1| transcriptional regulatory protein UhpA [Escherichia coli TA143]
          Length = 196

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|182437063|ref|YP_001824782.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777678|ref|ZP_08236943.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465579|dbj|BAG20099.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658011|gb|EGE42857.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              +A + +I        +         + +     LT RET   +L   G T+ EI  +
Sbjct: 119 RAAMAGDTLISPSLTVSLLRHHRDAGRPRAAEPLDALTGRETEIARLVAKGMTNAEIGAE 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +S  T   ++ +   KLD  NR+   A     G 
Sbjct: 179 LFISAGTAKTHVANVQRKLDVRNRVGIAAWIWGNGL 214


>gi|126651238|ref|ZP_01723448.1| probable transcriptional regulator, luxR family protein [Bacillus
           sp. B14905]
 gi|126592076|gb|EAZ86142.1| probable transcriptional regulator, luxR family protein [Bacillus
           sp. B14905]
          Length = 830

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 163 LFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           L +  +  A+    LT+RE     L  DG T+ EIA++L LS  TV  YL +   KL   
Sbjct: 760 LKEGTAFPAKAPSMLTQREKDIYDLLVDGITNREIAKRLHLSEGTVRVYLSTIYSKLGVN 819

Query: 220 NRIQAIAK 227
           +R +AIA 
Sbjct: 820 SRAKAIAL 827


>gi|126348327|emb|CAJ90048.1| putative two component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 221

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           ++I +F    K+ ++A     LTERE   + L G G ++EEIA +L +S  T   ++   
Sbjct: 134 RLIAEFAARSKEPAAAGELARLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRT 193

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
            VKL A +R Q +  A   G +
Sbjct: 194 MVKLGARDRAQLVVLAYESGLV 215


>gi|146311212|ref|YP_001176286.1| DNA-binding transcriptional regulator CsgD [Enterobacter sp. 638]
 gi|145318088|gb|ABP60235.1| response regulator receiver protein [Enterobacter sp. 638]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGSSNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|17233032|ref|NP_490122.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17135554|dbj|BAB78100.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 255

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 27/182 (14%)

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               +    +      P+    +        + ++    +      AG   P+       
Sbjct: 63  SIEHNPIAHYLVERHAPVHEALVM----SPKAWKVICPRQDHWHVMAG---PIINRNQIV 115

Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARN-------------- 173
           G V  T E  M A +   + +    C  +      +  + ++ A++              
Sbjct: 116 GVVGCTREKSMPAFDTQNLTDLSSICLHLSVWAATVDSQSTATAKSHHYPFQSDACGGLR 175

Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA--KAI 229
             LT RE    QL   G T+ EI  +L ++ ++V   L     KL   +R + +A   A 
Sbjct: 176 QHLTPRELQIAQLVALGLTNAEIGHQLWITENSVKQALKRMFRKLKVSSRAEMVAQLLAR 235

Query: 230 RF 231
           + 
Sbjct: 236 KH 237


>gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
 gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
          Length = 201

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 36/75 (48%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                   +     L+ERE   L  +  G TS EIA  LGLS  TV+ ++ +A  KL   
Sbjct: 125 ARRPRTHTAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVA 184

Query: 220 NRIQAIAKAIRFGYI 234
            RI+A+ +A   G I
Sbjct: 185 TRIEAVVRASSSGII 199


>gi|289772962|ref|ZP_06532340.1| multidomain-containing protein family [Streptomyces lividans TK24]
 gi|289703161|gb|EFD70590.1| multidomain-containing protein family [Streptomyces lividans TK24]
          Length = 780

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 40/122 (32%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
              +         +   + LG     +    +    L    +I+                
Sbjct: 649 LWGVRALSAQHTQVENTLMLGLGAERFTQVYTFGTRLPVPQLIDVACGNAHADDAAPPRH 708

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               S    LT RE     L G+G T+ +IAE+L +S  T + ++     KL   +R Q 
Sbjct: 709 PHDGSPLGPLTPREREVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQI 768

Query: 225 IA 226
            A
Sbjct: 769 AA 770


>gi|305680225|ref|ZP_07403033.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659756|gb|EFM49255.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L   G+G T+ EIA +L +S  TV  ++ +   K+ A +R+     A + G 
Sbjct: 157 LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDRVALAIIARKVGL 216


>gi|237730973|ref|ZP_04561454.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2]
 gi|226906512|gb|EEH92430.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|116070777|ref|ZP_01468046.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116066182|gb|EAU71939.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 228

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           E  + A    +   +  L   +    +   LT RE   L     G T +EIAE L +S  
Sbjct: 136 EAAVLAVMGHHSYRSPSLRGGELPYLSCPRLTPREYEVLDRLARGMTDKEIAEALVVSEQ 195

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T   Y       L+  NR+QA+ K +R G +
Sbjct: 196 TARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226


>gi|94500129|ref|ZP_01306663.1| regulatory protein, LuxR [Oceanobacter sp. RED65]
 gi|94427702|gb|EAT12678.1| regulatory protein, LuxR [Oceanobacter sp. RED65]
          Length = 753

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 3/162 (1%)

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D+ L H       +    I            S  L    + F G     R  F +   
Sbjct: 585 LRDELLKHDYHVRALVAEAQIIVAHWYLGKRARSKILLKQAVQFYGWLLFNRTLFDEAPL 644

Query: 132 VIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +I     L+   E+             +   +       ++    LT +E   L L   G
Sbjct: 645 IIPILSNLISMGELQPSKQYLSTYRNILFPRYATDADDITARYNELTNKEKEVLMLLAQG 704

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            +++EIA+ + ++  T+  +L +   KL   +R  A+A   R
Sbjct: 705 LSNQEIADDMAVAATTIKWHLKNIYRKLSLDSRSAAVAYMHR 746


>gi|322833700|ref|YP_004213727.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321168901|gb|ADW74600.1| two component transcriptional regulator, LuxR family [Rahnella sp.
           Y9602]
          Length = 218

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            ++ +     A     Q+     ++  +  +   +L+ERE   + +   G    EI+E+L
Sbjct: 116 RLVDSGQRYIASDIAQQM--ALSQIEPQSETPFDSLSERELQIMLMITKGQKVNEISEQL 173

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 174 NLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|297537662|ref|YP_003673431.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257009|gb|ADI28854.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 219

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S   ++T RE   L+L  +G+ ++ IA  L +SV T+  +  +   KLD  N       
Sbjct: 150 TSTWDSITLREREVLKLIAEGHPNKFIANYLCVSVKTIEKHRSNLMKKLDMHNAASLAVF 209

Query: 228 AIRFGYI 234
           AI  G I
Sbjct: 210 AIEKGLI 216


>gi|227833142|ref|YP_002834849.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182367|ref|ZP_06041788.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454158|gb|ACP32911.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 202

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               + + +A    +  +   D         +    L++RE    +L   G  S +IA +
Sbjct: 106 DTPPDELADAIRRVHSGLRVIDPQLAQDILFTPDNPLSDREAEVCRLLLRGLGSADIASQ 165

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  ++ +   K  A NR +A  +A   G+I
Sbjct: 166 LHLSGGTVRNHVSAIMAKTRAGNRFEAARRAEANGWI 202


>gi|225022240|ref|ZP_03711432.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944963|gb|EEG26172.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L   G+G T+ EIA +L +S  TV  ++ +   K+ A +R+     A + G 
Sbjct: 157 LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDRVALAIIARKVGL 216


>gi|31790496|emb|CAD56673.1| putative regulatory protein [Citrobacter freundii]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|15601439|ref|NP_233070.1| transcriptional regulator UhpA [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121585560|ref|ZP_01675356.1| transcriptional regulatory protein UhpA [Vibrio cholerae 2740-80]
 gi|153818102|ref|ZP_01970769.1| transcriptional regulator UhpA [Vibrio cholerae NCTC 8457]
 gi|153820706|ref|ZP_01973373.1| transcriptional regulator UhpA [Vibrio cholerae B33]
 gi|227812249|ref|YP_002812259.1| transcriptional regulator UhpA [Vibrio cholerae M66-2]
 gi|229506156|ref|ZP_04395665.1| transcriptional regulatory protein UhpA [Vibrio cholerae BX 330286]
 gi|229509986|ref|ZP_04399466.1| transcriptional regulatory protein UhpA [Vibrio cholerae B33]
 gi|229516453|ref|ZP_04405900.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC9]
 gi|229605695|ref|YP_002876399.1| transcriptional regulatory protein UhpA [Vibrio cholerae MJ-1236]
 gi|254849842|ref|ZP_05239192.1| transcriptional regulatory protein UhpA [Vibrio cholerae MO10]
 gi|255746549|ref|ZP_05420496.1| transcriptional regulatory protein UhpA [Vibrio cholera CIRS 101]
 gi|262158861|ref|ZP_06029974.1| transcriptional regulatory protein UhpA [Vibrio cholerae INDRE
           91/1]
 gi|298499483|ref|ZP_07009289.1| transcriptional regulatory protein UhpA [Vibrio cholerae MAK 757]
 gi|9658099|gb|AAF96582.1| transcriptional regulator UhpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121550177|gb|EAX60191.1| transcriptional regulatory protein UhpA [Vibrio cholerae 2740-80]
 gi|126511370|gb|EAZ73964.1| transcriptional regulator UhpA [Vibrio cholerae NCTC 8457]
 gi|126521749|gb|EAZ78972.1| transcriptional regulator UhpA [Vibrio cholerae B33]
 gi|227011391|gb|ACP07602.1| transcriptional regulator UhpA [Vibrio cholerae M66-2]
 gi|229346334|gb|EEO11305.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC9]
 gi|229352431|gb|EEO17371.1| transcriptional regulatory protein UhpA [Vibrio cholerae B33]
 gi|229356507|gb|EEO21425.1| transcriptional regulatory protein UhpA [Vibrio cholerae BX 330286]
 gi|229372181|gb|ACQ62603.1| transcriptional regulatory protein UhpA [Vibrio cholerae MJ-1236]
 gi|254845547|gb|EET23961.1| transcriptional regulatory protein UhpA [Vibrio cholerae MO10]
 gi|255736303|gb|EET91701.1| transcriptional regulatory protein UhpA [Vibrio cholera CIRS 101]
 gi|262029434|gb|EEY48085.1| transcriptional regulatory protein UhpA [Vibrio cholerae INDRE
           91/1]
 gi|297541464|gb|EFH77515.1| transcriptional regulatory protein UhpA [Vibrio cholerae MAK 757]
          Length = 208

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGYVIFTSEFLM 140
           +    I      E+   L  RL      F  I   +             G   + S+   
Sbjct: 48  VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGAQGYLSKRCG 107

Query: 141 LA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +        V       C   + +        ++   +LT+RE     L   G   +EI
Sbjct: 108 PSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLLVQGKEVKEI 165

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 166 AQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHQLL 205


>gi|330720530|gb|EGG98815.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [gamma proteobacterium IMCC2047]
          Length = 238

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++   +L+ R+   L L   G +++ IAE+LGL+  TV  ++     KL+  NR +A+AK
Sbjct: 169 AAQISSLSRRQLEVLGLIISGKSNQAIAEELGLTTPTVKMHVSGIFKKLNVSNRTEAVAK 228


>gi|294677045|ref|YP_003577660.1| LuxR family two component transcriptional regulator [Rhodobacter
           capsulatus SB 1003]
 gi|294475865|gb|ADE85253.1| two component transcriptional regulator, LuxR family [Rhodobacter
           capsulatus SB 1003]
          Length = 206

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 38/83 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A   V   F  L ++       LT RET  L+    G T++EIA ++ L   TV  ++ 
Sbjct: 123 MASGSVFAPFDFLKQEEPPVQGGLTARETEVLRGICAGRTNKEIAREMDLQEVTVKLHVR 182

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           + T K+ A NR  A   A   G+
Sbjct: 183 TLTRKIGARNRTHAAMIARENGW 205


>gi|291300164|ref|YP_003511442.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569384|gb|ADD42349.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 ++    LT+RE + L    DG ++ +IA +L L V TV  ++ +   KL+  NR
Sbjct: 141 RRQSADTALIDTLTDRERAVLVHLADGLSNADIAARLYLGVGTVKDHVSAILAKLEVANR 200

Query: 222 IQAIAKAIRFGYI 234
           +QA   A R G +
Sbjct: 201 VQAALLAERAGLL 213


>gi|312195736|ref|YP_004015797.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227072|gb|ADP79927.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 216

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 37/123 (30%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +         ++ +  +      A                + 
Sbjct: 93  RAGARGYVTKTISADELADAVERVAGGDVVFSPRLAGFVLDAFRDASNAPPAAAAAPDAD 152

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   L+L   GY  +EIA +L +SV TV  +  +   KL   +R Q    A  
Sbjct: 153 FDQLTPREREVLRLLARGYAYKEIAAELFISVKTVETHASNVLRKLRLSSRHQLTRWAAD 212

Query: 231 FGY 233
              
Sbjct: 213 RRI 215


>gi|209863940|gb|ACI88885.1| AlnR6 two component response regulator [Streptomyces sp. CM020]
          Length = 218

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYT 190
                + + + +I A G   ++I  F       + A       LT RE   L     G++
Sbjct: 113 AGIRAVASGDAVI-APGLTRKLIDAFSAHLPGTTPAQDRQLTALTTREREVLTAIATGWS 171

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + EIA +  L+  TV +++     K+ A +R+QA+  A   G +
Sbjct: 172 NTEIANRFSLAESTVKSHVSHILAKIGARDRVQAVIFAYDMGLV 215


>gi|71065169|ref|YP_263896.1| nitrate/nitrite response regulator [Psychrobacter arcticus 273-4]
 gi|71038154|gb|AAZ18462.1| nitrate/nitrite response regulator, possibly NarL [Psychrobacter
           arcticus 273-4]
          Length = 219

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A +LT RE   +Q+  +G +++ IA KL ++  TV  ++     K     R+ A   
Sbjct: 156 AGSLTGRELQVIQMIAEGLSNKMIANKLDIAESTVKVHVKHILNKTGLRTRVDAAVW 212


>gi|60683534|ref|YP_213678.1| transcriptional regulator GerE [Bacteroides fragilis NCTC 9343]
 gi|60494968|emb|CAH09784.1| putative transcriptional regulator GerE, LuxR family [Bacteroides
           fragilis NCTC 9343]
          Length = 278

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 22/181 (12%)

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
           +  D  +     +  Y                 + I  +   +      +R+      + 
Sbjct: 116 HPDDLVEKYVQELRFYH--------------FLKQIPHKKRADYFLMSKLRMRDPSGKYI 161

Query: 117 GIA---FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
            I    F V    + + ++      L +   +   +           +EL K+  S    
Sbjct: 162 PILHRMFYVATHSNDSMWLALCLYNLSVDPTM---SCRVINSTNGQVIELEKQDCSRL-- 216

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE + LQL   G TS EIA +L +S +TV+ +  +   KL   N I+A   A     
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 234 I 234
           +
Sbjct: 277 L 277


>gi|51594665|ref|YP_068856.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|186893668|ref|YP_001870780.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587947|emb|CAH19550.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|186696694|gb|ACC87323.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 210

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L +  ++    LT RE   L+L  +G  +  IA +L +S  TV  +  +   KLD     
Sbjct: 138 LTQGPANTPTVLTPRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVA 197

Query: 223 QAIAKAIRFGY 233
           + I  + R G 
Sbjct: 198 ELIHWSYRLGL 208


>gi|323965835|gb|EGB61285.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|327250808|gb|EGE62510.1| transcriptional regulatory protein uhpA [Escherichia coli STEC_7v]
          Length = 196

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|294139532|ref|YP_003555510.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea
           DSS12]
 gi|224613098|dbj|BAH24209.1| regulator protein [Shewanella violacea]
 gi|293326001|dbj|BAJ00732.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea
           DSS12]
          Length = 209

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA---HGACYQVITD- 159
           L    +    +   V         +I              ++++E        ++V+++ 
Sbjct: 72  LRQEGVTSRIVILTVSDAKQDVIRLIRAGADGYLLKDTEPDLLLEKLKKAMLGHRVMSES 131

Query: 160 ------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                  L+          NLT RE   LQL   G ++  ++E L +S  TV  ++ +  
Sbjct: 132 VENYLYELKDASDEFDWLDNLTPRELQILQLVAQGKSNRTLSEHLHISEGTVKVHVKNLL 191

Query: 214 VKLDAVNRIQAIAKAIRF 231
            K +A +R +   + ++ 
Sbjct: 192 RKANAKSRTEMAVRYLKH 209


>gi|297204156|ref|ZP_06921553.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714163|gb|EDY58197.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 232

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 2/130 (1%)

Query: 107 RLEGGLL-PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
                     AG A  +R     +  V            V      A    + +   +  
Sbjct: 93  DDAHPYGALRAGAAGHLREDATADELVAAVRVVAAGDVVVSPGLARALIDAVRNRRAVEN 152

Query: 166 KRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                    LT RE   L     G ++ EIA++L ++  TV +++ +   K+ A  R+QA
Sbjct: 153 SVPGNRLGTLTGRERDVLTAVASGESNAEIADRLCIAPTTVKSHVSNILTKIGARGRVQA 212

Query: 225 IAKAIRFGYI 234
           +  A   G +
Sbjct: 213 VVFAYESGLV 222


>gi|289422732|ref|ZP_06424572.1| response regulator [Peptostreptococcus anaerobius 653-L]
 gi|289156911|gb|EFD05536.1| response regulator [Peptostreptococcus anaerobius 653-L]
          Length = 199

 Score = 82.6 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     +    LT +E   L+    G +++EIA    LS  TV  Y+     KLDA NR
Sbjct: 127 ELMDIVINDHSPLTSQEEELLRKVAQGLSNKEIARISYLSDGTVRNYISIILQKLDAENR 186

Query: 222 IQAIAKAIRFGYI 234
             A+  A    +I
Sbjct: 187 TDAVRIAQEKNWI 199


>gi|84683702|ref|ZP_01011605.1| Possible LuxR family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84668445|gb|EAQ14912.1| Possible LuxR family protein [Rhodobacterales bacterium HTCC2654]
          Length = 203

 Score = 82.6 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 55/221 (24%), Gaps = 24/221 (10%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +L   L  +     A  F    I  A               Y+    D          
Sbjct: 7   IDDLLSELGGVAP---AGYFLALHIRFAAPL-------MMFQTYNPAWTDHYTRNAYALR 56

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D  +    S      W  I             +          G+               
Sbjct: 57  DPMVAWGISRSGATRWSDIDLPDPFG-----IMAEAASFGLVYGVCVSC-GPMTSRTVAG 110

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                     E +    G   ++  +        +    +LT+ E   L +   G     
Sbjct: 111 VARGDREFNEEEMSAVTGCVLRLHHE--------TQPPDHLTKAEKQALLVIASGDRYAA 162

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            A +LG+S     A L +A  KL A    +A+ +A  +  I
Sbjct: 163 GAARLGISESAFKARLSAARRKLFARTTAEALQRAKDYRLI 203


>gi|148252241|ref|YP_001236826.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146404414|gb|ABQ32920.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 305

 Score = 82.6 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 29/56 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            LT RE+  L     G T+ +IA+ LGLS  TV+ +L     KL   NR  A A A
Sbjct: 242 GLTVRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 297


>gi|238796161|ref|ZP_04639672.1| hypothetical protein ymoll0001_5030 [Yersinia mollaretii ATCC
           43969]
 gi|238720106|gb|EEQ11911.1| hypothetical protein ymoll0001_5030 [Yersinia mollaretii ATCC
           43969]
          Length = 211

 Score = 82.6 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  +  IA++L +S  TV  +  +   KLD     + I  + R G 
Sbjct: 150 LTPRERQILKLITEGACNRIIADRLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 209


>gi|320333213|ref|YP_004169924.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754502|gb|ADV66259.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 194

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
              + G   + S+      ++  +      +   D L            LT RE   L+L
Sbjct: 90  SARRAGARAYLSKETPP-QDLARQLRALMDRPFDDHL-----PHVTVPTLTPREGDVLRL 143

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG +++EIA  LG+S  TV  +L    VKLDA +R+ A+ KA   G I
Sbjct: 144 LADGQSNKEIARSLGVSPETVKEHLARMYVKLDAPDRVSALNKARTLGLI 193


>gi|269957966|ref|YP_003327755.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306647|gb|ACZ32197.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 876

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 38/95 (40%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G     +         + E      +V  D      + ++    LT RE    +LA  G
Sbjct: 775 AGLAALRASGGAARAGQVHEDARRRLEVWGDEAAAGLRSAAEGAELTAREDEIARLAASG 834

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            T+++IA +L +SV TV  +L     KL   NR +
Sbjct: 835 MTNQDIARRLLISVRTVENHLHRVFRKLGVDNRAE 869


>gi|254447404|ref|ZP_05060870.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
 gi|198262747|gb|EDY87026.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
          Length = 213

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD------FLELFKKRSSAA 171
           +   +RLG         T + L+ + E+++         I             +     A
Sbjct: 91  LQQAIRLGAKGYLLKDVTLDNLLASLELVMAGQSVFDNRINHRTDDVSAASRSQASLGDA 150

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT RE + ++L  +G +++EIA +L L + TV  Y+ S  +KL   +R QA+ K    
Sbjct: 151 YDLTAREVNIIELMSEGASNKEIAFRLDLKMGTVKNYVSSVLLKLGVRDRTQAVIKIKEE 210

Query: 232 GY 233
           G+
Sbjct: 211 GW 212


>gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 233

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L L  +G  ++EIA +LG +V  V  Y+     K    +R + +  A+  G +
Sbjct: 172 TPREQDVLNLVAEGLMNKEIASRLGTTVRNVEKYVSRLFGKTGTNSRTELVRYALENGLV 231


>gi|120600280|ref|YP_964854.1| two component LuxR family transcriptional regulator [Shewanella sp.
           W3-18-1]
 gi|146291788|ref|YP_001182212.1| two component LuxR family transcriptional regulator [Shewanella
           putrefaciens CN-32]
 gi|120560373|gb|ABM26300.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
 gi|145563478|gb|ABP74413.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens CN-32]
 gi|319425025|gb|ADV53099.1| two component transcriptional regulator for nitrate/nitrite
           response, NarP [Shewanella putrefaciens 200]
          Length = 209

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153
              +    +    +   V         ++              ++++E        H   
Sbjct: 69  LNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVI 128

Query: 154 YQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            + I ++L   K  +       +LT RE   LQ   +G ++  I+E L +S  TV  ++ 
Sbjct: 129 SEEIEEYLYELKNVADEQEWISSLTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K +A +R +   +
Sbjct: 189 NLLRKANAKSRTEMAVR 205


>gi|194467990|ref|ZP_03073976.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
 gi|194452843|gb|EDX41741.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
          Length = 217

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L   GYT++EIA K+ +S  TV A+      KL+  +  + +  A++  
Sbjct: 154 ALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHQ 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|300692972|ref|YP_003753967.1| response regulator, LuxR family [Ralstonia solanacearum PSI07]
 gi|299080032|emb|CBJ52706.1| putative response regulator, LuxR family [Ralstonia solanacearum
           PSI07]
          Length = 210

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCL 182
                GYV+  +    L   +     G  +      + + ++  +      LT RE   L
Sbjct: 98  RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVAPTPVEALTPREHDIL 157

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
                G++++ IA++LGLSV TV ++  +   KL    + + +  A+  G
Sbjct: 158 DGVAQGWSNKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVEVG 207


>gi|297627348|ref|YP_003689111.1| Two component transcriptional regulator, LuxR family
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923113|emb|CBL57700.1| Two component transcriptional regulator, LuxR family
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 220

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             + ++  +            +     E  ++       LT+RE   L     G T+ EI
Sbjct: 123 AGDSVVAPSATRRLLDHVAPTLPDHVGEPDER----LDVLTDREREVLVEVAKGATNAEI 178

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A  L ++  TV  ++G    KL   +R+  +  A   G 
Sbjct: 179 ATNLFMAEGTVKTHIGRLLAKLHCRDRVGLVLFAYETGL 217


>gi|223937111|ref|ZP_03629018.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894133|gb|EEF60587.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A+ L  RE   L L   GY  +EI  KLGLSV TV  Y+ +A  K+   +RI+A+AK
Sbjct: 148 AKPLAPREEQVLTLLASGYLYKEIGAKLGLSVETVRTYVKNACTKMHVRSRIEAVAK 204


>gi|104781646|ref|YP_608144.1| PAS domain-containing protein [Pseudomonas entomophila L48]
 gi|95110633|emb|CAK15344.1| putative PAS domain containing response regulator, LuxR family
           [Pseudomonas entomophila L48]
          Length = 190

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++    E   ++ +    LT RE        +G T +E+A +LG+S  TV  +      
Sbjct: 113 ELMIWHFERLDRQPAPTVQLTPREREISLHIVNGLTCKEVARQLGISHRTVEVHRARLMK 172

Query: 215 KLDAVNRIQAIAK 227
           KL A N  + ++K
Sbjct: 173 KLQAKNSAELVSK 185


>gi|325000860|ref|ZP_08121972.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 222

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R L+ RE   LQL  DG +++EI E L LS  TV ++L     KL   +R Q +A A+
Sbjct: 157 TPRELSAREVEVLQLVADGQSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAM 216

Query: 230 RFGYI 234
           R G I
Sbjct: 217 RAGVI 221


>gi|121603701|ref|YP_981030.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120592670|gb|ABM36109.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 214

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++A   LT+RE    +L   G +  +IA +L LS  T++ +  +   K++  N+ + I  
Sbjct: 143 AAAHEKLTDREFEVFRLIAIGMSVTDIAGRLNLSAKTISTHKANLMQKMNLQNQSELIRY 202

Query: 228 AIRFG 232
           AI+ G
Sbjct: 203 AIKHG 207


>gi|326330563|ref|ZP_08196870.1| two-component system, regulatory protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951638|gb|EGD43671.1| two-component system, regulatory protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 219

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 39/84 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+T         +  +  LT RE   L    +G ++EEIA+ L L V TV ++L 
Sbjct: 134 RVLREVVTRRRTQPVTAARGSELLTTRELDILLHLAEGMSNEEIAQALVLEVSTVKSHLA 193

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   +R+QA   A + G I
Sbjct: 194 RMMPKLGVKSRLQAAVWAYQSGLI 217


>gi|317970291|ref|ZP_07971681.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 228

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 97  VIESSGQLSVRLEGGLLPFAGIAFPV-RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155
            +    +        ++   G A PV          V+  ++F+     +          
Sbjct: 86  DLARKAKALQPQLKVVMLALGDAIPVEHAEASWLEAVVAEADFIEDQKPLEAAVLAVMGH 145

Query: 156 VITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                  L   +    +   LT RE   L L   G T  EIAE+L +S  T   Y     
Sbjct: 146 HAYRSPSLRSGQLPYLSCPRLTPREYEVLDLLASGLTDREIAEQLVVSEETARTYTKRLL 205

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
             L+  NR+QA+ K +R G +
Sbjct: 206 KTLEVNNRVQAVLKGMRCGMV 226


>gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1]
 gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1]
          Length = 319

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|302531478|ref|ZP_07283820.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302440373|gb|EFL12189.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 225

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIA 195
            ++ A E ++        +         +R  +SA R +TERE   L L   G +++EIA
Sbjct: 119 RVVAAGEALLAPTVTRRLIAEIVGRPEHRRIDTSAVREVTEREREVLALVAGGLSNDEIA 178

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L +S  T   ++     K+ A +R Q +  A   G +
Sbjct: 179 AHLVISAATARTHVSRIMTKIGARDRAQLVVLAYESGLV 217


>gi|218514343|ref|ZP_03511183.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 113

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
               + L+L +   SA   LT RE   L L   G  ++ IA+KL LS +TV  ++ +   
Sbjct: 26  AARNNALKLRRDSISA---LTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYK 82

Query: 215 KLDAVNRIQAIAK 227
           K++  NR +A ++
Sbjct: 83  KMNVRNRTEAASR 95


>gi|241664982|ref|YP_002983342.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|240867009|gb|ACS64670.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 214

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCL 182
                GYV+  +    L   +     G  +      + + ++    +    LT RE   L
Sbjct: 102 RAGARGYVLKDAPASELVEAIDAVLAGRPFYSAQLAMRMAEQAVMPTPVEALTPRERDIL 161

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
                GY ++ IA++LGLSV TV ++  +   KL    + + +  A+  G
Sbjct: 162 DGIAKGYANKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVELG 211


>gi|323167000|gb|EFZ52739.1| bacterial regulatory s, luxR family protein [Shigella sonnei 53G]
          Length = 185

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 87  PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 146

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 147 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 180


>gi|307546152|ref|YP_003898631.1| LuxR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218176|emb|CBV43446.1| two component transcriptional regulator, LuxR family [Halomonas
           elongata DSM 2581]
          Length = 221

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 40/78 (51%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            + + +  E   + + A  +LT ++   L +  +G  +++IA +L +S  T+ A++ +  
Sbjct: 134 AEALGEADEEDTRFAEAIASLTPQQFRVLNMLTEGLLNKQIAFELNVSEATIKAHVTAIL 193

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL   +R QA+  A + 
Sbjct: 194 RKLGVHSRTQAVIAAQKL 211


>gi|325673433|ref|ZP_08153124.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325555454|gb|EGD25125.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 306

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 38/239 (15%)

Query: 29  KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGL---- 84
             R  A+   +        ++    +H+Y          +   Y    L      +    
Sbjct: 72  GLRGLAVSESSGLGGHVVARRNPAAVHDYG-----RARTITHHYDGPVLAEGLCSVLAVP 126

Query: 85  -------LPIIWQSIQEETVIESSGQLSV-----------------RLEGGLLPFAGIAF 120
                    +++ +I+E   +       +                      LL  A    
Sbjct: 127 VVVRGNSRAVMYAAIRERVRLGDRIADVMMQAGRRLANEIAIRDEVDRRVALLDAAAAEV 186

Query: 121 PVRLGF-----HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           P   G            + +    +    +  +      ++          R +    L+
Sbjct: 187 PAPGGADAEEIRDVHAELRSIAQTVDDPALQEQLRALSNRLAGVGAADDTDRPTPPVALS 246

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L  A  G ++  IAE+L +   TV +YL SA  KLDA +R +A+  A R G +
Sbjct: 247 PREVDVLSHAALGCSNVVIAERLSVKPETVKSYLRSAMSKLDAHSRREAVVAARRLGLL 305


>gi|228949758|ref|ZP_04111975.1| Response regulator receiver [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809915|gb|EEM56319.1| Response regulator receiver [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 503

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDFLE--LFKKRSSAAR-N 173
           +R G          S  L  +  ++        H   +++  +  E  LF+ +S      
Sbjct: 382 IRNGADGYVLKSIDSRELAESIRLVYRGSTMITHDLFHRMWEENEETGLFESQSDGIEYG 441

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+L   G   + IA  L LS  TV  Y  +   KL   NR +A+ KA   G 
Sbjct: 442 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 501

Query: 234 I 234
           +
Sbjct: 502 L 502


>gi|312972209|ref|ZP_07786383.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
 gi|310334586|gb|EFQ00791.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
          Length = 196

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 98  PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 158 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191


>gi|302522670|ref|ZP_07275012.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78]
 gi|318057801|ref|ZP_07976524.1| response regulator [Streptomyces sp. SA3_actG]
 gi|302431565|gb|EFL03381.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78]
          Length = 290

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              G  +      +    +  E  G C ++     +    R + A  LT RE   L +  
Sbjct: 184 RDTGAHLRGLADRLTDPALRAELLGVCARL--AAADAGPPRGAQAPPLTPREVEVLVIVA 241

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G T+  +A +LGL   TV AYL +A  KL A  R +A+A A R G +
Sbjct: 242 EGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGVV 289


>gi|256025755|ref|ZP_05439620.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia sp. 4_1_40B]
          Length = 200

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|239985867|ref|ZP_04706531.1| two component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 221

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G   ++I +F    K+ ++AA    LTERE   + L G G ++EEIA +L +S  T   +
Sbjct: 130 GVTRRLIAEFAARSKEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    VKL A +R Q +  A   G +
Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|254502437|ref|ZP_05114588.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222438508|gb|EEE45187.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 203

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 3/114 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERE 178
            P+ +   +NG   F       + E ++E        +                 LT RE
Sbjct: 89  IPLAVEAIRNGAHDFI--EKPFSAESVLERVREGINAMKQRQSSDDGMQFEGVDLLTRRE 146

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              L+   DG +++E    LG+S  TV  +      KL A N  + +   +  G
Sbjct: 147 LEVLKEITDGASNKEAGRTLGISPRTVEVHRARIMEKLGARNAAELVRIVLGHG 200


>gi|114799510|ref|YP_759982.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739684|gb|ABI77809.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC
           15444]
          Length = 213

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            + +     +  + I D   L    ++   +LT RE   L L G G  + E+A  L LS 
Sbjct: 119 ADGVPALSPSIARRIMDHFRL-TGPAAPDDDLTARERDVLALIGRGMRNGEVARALDLSE 177

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +TV +Y+     KL   +R +A   A R G 
Sbjct: 178 NTVASYIKGIYRKLGISSRAEASWHATRMGL 208


>gi|111022138|ref|YP_705110.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821668|gb|ABG96952.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 222

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 151 GACYQVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           G    V+ ++  +    +     A   LTERET  L+    G ++++IA KL LS  TV 
Sbjct: 135 GLAGLVLGEYRRMSSAPADEQGLAVPRLTERETEVLRFVAKGLSAKQIATKLSLSHRTVE 194

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ +   KL   NR++    AI  G 
Sbjct: 195 NHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|91228457|ref|ZP_01262381.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269966819|ref|ZP_06180892.1| Transcriptional regulator [Vibrio alginolyticus 40B]
 gi|91187992|gb|EAS74300.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269828486|gb|EEZ82747.1| Transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 209

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +     LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+
Sbjct: 142 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 201

Query: 226 AK 227
             
Sbjct: 202 IM 203


>gi|313677708|ref|YP_004055704.1| ATP-dependent transcriptional regulator, malt-like, luxr family
           [Marivirga tractuosa DSM 4126]
 gi|312944406|gb|ADR23596.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Marivirga tractuosa DSM 4126]
          Length = 548

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            L+ RE   L  A    T++EIA+K+ +SV+TV  +L +   KL   NR + I  A+
Sbjct: 485 PLSTREIEVLTYALSDLTNQEIADKVFVSVNTVKFHLKNIYEKLGVSNRKEVIKFAL 541


>gi|294633266|ref|ZP_06711825.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
 gi|292831047|gb|EFF89397.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
          Length = 230

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFL--ELFKKRSSAARN 173
            +  G             L+ A   +             +++      +  +++  A   
Sbjct: 104 SIMAGASGYVLKQIQGSDLVSAVRTVARGQSLLDPSATTKLMARLRGGQQQEEQPDALPG 163

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LTERE   L L G+G T+ +I ++L L+  TV  ++     KL    RIQA   A + 
Sbjct: 164 LTEREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 221


>gi|256789068|ref|ZP_05527499.1| multidomain-containing protein family [Streptomyces lividans TK24]
          Length = 772

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 40/122 (32%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
              +         +   + LG     +    +    L    +I+                
Sbjct: 641 LWGVRALSAQHTQVENTLMLGLGAERFTQVYTFGTRLPVPQLIDVACGNAHADDAAPPRH 700

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               S    LT RE     L G+G T+ +IAE+L +S  T + ++     KL   +R Q 
Sbjct: 701 PHDGSPLGPLTPREREVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQI 760

Query: 225 IA 226
            A
Sbjct: 761 AA 762


>gi|258650739|ref|YP_003199895.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553964|gb|ACV76906.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 215

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             E+  +       L+ERE   L+    G +  ++A++L +   TV  +      KL   
Sbjct: 140 AQEIRLRAQPTGPVLSERELQVLRGFARGQSIPQLAKELYIGASTVKTHTQRLYEKLGVS 199

Query: 220 NRIQAIAKAIRFGYI 234
           +R  A+A+A+R G +
Sbjct: 200 DRAAAVAEAMRRGLL 214


>gi|297198347|ref|ZP_06915744.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714401|gb|EDY58435.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 209

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183
               GY++       LA  V   A G      T    L    +       L+ RET+ L+
Sbjct: 98  AGAAGYLLKDLPRAELARSVRAAARGETVLAPTVAARLVDQLRTRPERPRLSARETAVLR 157

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  DG T+ EI  +L +   TV  +L     KL   +R  A+  A+RFG +
Sbjct: 158 LVADGCTNAEIGRRLYIGESTVKTHLLRVFGKLGVDDRTAAVTSAMRFGLL 208


>gi|91787753|ref|YP_548705.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91696978|gb|ABE43807.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 270

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 167 RSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           RS+   +  L+ERET  +     G T+ EI   L +S  TV  ++     KL+  NR QA
Sbjct: 200 RSAPEDSCGLSERETQIMAWVAMGKTNSEIGTILNISGFTVKNHMQRIFQKLNVFNRTQA 259

Query: 225 IAKAIR 230
           ++K  R
Sbjct: 260 VSKVTR 265


>gi|148262835|ref|YP_001229541.1| two component LuxR family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146396335|gb|ABQ24968.1| two component transcriptional regulator, LuxR family [Geobacter
           uraniireducens Rf4]
          Length = 217

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL--FKKRSSAARNLTE 176
               GY++       +   V   A G           V  +F  L   ++       LT 
Sbjct: 98  AGARGYLLKDGSGDDVVAAVRSVAQGGVILPPDMASLVFEEFRRLAGDEQDGVPDERLTP 157

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            E   L     G  + +IA  L ++  TV   L     KL   NR QA   A+R G+
Sbjct: 158 GEMDVLLRIAQGDDNRQIAAALNVTTKTVANRLSEIFSKLHVKNRTQAALTALRKGW 214


>gi|313149427|ref|ZP_07811620.1| response regulator receiver protein [Bacteroides fragilis 3_1_12]
 gi|313138194|gb|EFR55554.1| response regulator receiver protein [Bacteroides fragilis 3_1_12]
          Length = 251

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE + LQL   G TS EIA +L +S +TV+ +  +   KL   N I+A   A     
Sbjct: 190 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 249

Query: 234 I 234
           +
Sbjct: 250 L 250


>gi|301165031|emb|CBW24597.1| putative transcriptional regulator GerE, LuxR family [Bacteroides
           fragilis 638R]
          Length = 278

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE + LQL   G TS EIA +L +S +TV+ +  +   KL   N I+A   A     
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 234 I 234
           +
Sbjct: 277 L 277


>gi|265767479|ref|ZP_06095145.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16]
 gi|263252784|gb|EEZ24296.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16]
          Length = 278

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE + LQL   G TS EIA +L +S +TV+ +  +   KL   N I+A   A     
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 234 I 234
           +
Sbjct: 277 L 277


>gi|255011592|ref|ZP_05283718.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 278

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE + LQL   G TS EIA +L +S +TV+ +  +   KL   N I+A   A     
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 234 I 234
           +
Sbjct: 277 L 277


>gi|254496316|ref|ZP_05109202.1| two-component response regulator [Legionella drancourtii LLAP12]
 gi|254354477|gb|EET13126.1| two-component response regulator [Legionella drancourtii LLAP12]
          Length = 212

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +    +LTERE   + L  +G  ++EIA +L +S+ TV A+  +   K+ A N    
Sbjct: 131 EYINERINSLTERERQIIDLISEGKLNKEIAYELTISISTVEAHRANIMRKMQAKNLAHL 190

Query: 225 IAKAIRFGY 233
           I    +  +
Sbjct: 191 IKLYYKSQW 199


>gi|253566600|ref|ZP_04844053.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5]
 gi|251944772|gb|EES85247.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5]
          Length = 278

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE + LQL   G TS EIA +L +S +TV+ +  +   KL   N I+A   A     
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 234 I 234
           +
Sbjct: 277 L 277


>gi|291302684|ref|YP_003513962.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290571904|gb|ADD44869.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 134

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+S  R L+ RE+  L     G ++ EI  +L ++  TV  +      KL A +R  A+A
Sbjct: 66  RTSIQRGLSARESQVLLAIASGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVA 125

Query: 227 KAIRFGYI 234
           +A R G +
Sbjct: 126 EAFRVGIL 133


>gi|226366040|ref|YP_002783823.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226244530|dbj|BAH54878.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 287

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                 + +    +    +     G   ++                 LT RE   L    
Sbjct: 179 RDIHAELRSVAQTVTDTSLQARLRGLSQRLAGILRPDAVADEDPGVRLTPREIDVLSHVA 238

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T+ E A++L +   TV +YL SA  KLDA +R +A+  A R G +
Sbjct: 239 LGCTNGEAAQRLSVGPETVKSYLRSAMSKLDARSRHEAVVTARRLGLL 286


>gi|260642682|ref|ZP_05859490.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           finegoldii DSM 17565]
 gi|260621023|gb|EEX43894.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           finegoldii DSM 17565]
          Length = 200

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           I++ H   +       ++      A     L+ RE   L L   G  ++EIA+KL +S+ 
Sbjct: 105 ILKLHQHAHHKGYPVKDMPPMIPPAHHQELLSAREIEVLVLITKGLINKEIADKLNISLT 164

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  +  + T KL   +       A+  GYI
Sbjct: 165 TVITHRKNITEKLGIKSVSGLTIYAVMNGYI 195


>gi|118465118|ref|YP_884392.1| two-component system response regulator [Mycobacterium avium 104]
 gi|118166405|gb|ABK67302.1| two-component system response regulator [Mycobacterium avium 104]
          Length = 218

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAA-RNLT 175
           L     G+V+  S    L   V   A            +V+T + +       AA   LT
Sbjct: 97  LRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPHGAAIAELT 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L L G G ++ EIA++L +S  TV +++G    KLD  +R  AI  A   G +
Sbjct: 157 TRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215


>gi|53715583|ref|YP_101575.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
 gi|52218448|dbj|BAD51041.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
          Length = 278

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE + LQL   G TS EIA +L +S +TV+ +  +   KL   N I+A   A     
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 234 I 234
           +
Sbjct: 277 L 277


>gi|15827939|ref|NP_302202.1| transcriptional regulator [Mycobacterium leprae TN]
 gi|221230416|ref|YP_002503832.1| putative transcriptional regulator [Mycobacterium leprae Br4923]
 gi|13093492|emb|CAC30706.1| possible transcriptional regulator [Mycobacterium leprae]
 gi|219933523|emb|CAR71848.1| possible transcriptional regulator [Mycobacterium leprae Br4923]
          Length = 1106

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 39/68 (57%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ ++   +LT  E + ++L  +G  +++IA +L +SV TV+ +L     KL   +R+Q
Sbjct: 1038 RKRPTTGWESLTPAEHNVIRLVSEGLDTKDIAARLFVSVRTVHTHLTRIYSKLGLTSRVQ 1097

Query: 224  AIAKAIRF 231
             + +A R 
Sbjct: 1098 LVQEAARH 1105


>gi|302521952|ref|ZP_07274294.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. SPB78]
 gi|302430847|gb|EFL02663.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. SPB78]
          Length = 194

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAAR---- 172
           L     G+++ T+E   L   V   A            +++ +F      R   A     
Sbjct: 74  LRAGAAGFLLKTAEAGELVAAVRTVAAGDGVVDPAVTRRLLAEFARGGTGRERPAPEGLA 133

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L   G+G  + EIAE++ ++  TV +++     KL   NR+QA   A   G
Sbjct: 134 RLTPREREVLSCLGEGLGNAEIAERIDVAEGTVKSHVRRLLAKLGLRNRLQASLLARDLG 193

Query: 233 Y 233
            
Sbjct: 194 L 194


>gi|297193150|ref|ZP_06910548.1| response regulator receiver protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151658|gb|EDY65235.2| response regulator receiver protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 557

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 11/170 (6%)

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +     G + +     +   +     +L  R        A +   +       G     
Sbjct: 388 VMAAAARGSVDLAAGDARSALIALRRAELGWRELDAPYETAHVRMLIGRACRALGDDETA 447

Query: 136 SEFLMLAN------EVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQL 184
              L  A           +             E   + + A        LT RE + L+L
Sbjct: 448 GIELEAARVGFERLRAAPDLARLDPFPRDAAAEQAPRHAPAHGPGGVLRLTPREQAVLRL 507

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + EIA +L +S HTV  ++ +   KLD  +R  A   A     +
Sbjct: 508 VAAGKHNREIASELVISEHTVARHIQNIFAKLDVSSRTAASVFAYEHHLV 557


>gi|254513468|ref|ZP_05125533.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
 gi|221532472|gb|EEE35468.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
          Length = 204

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +R L++RE   L+    G +++EIA  L L   T+  ++ +   KL+A NR QA   A  
Sbjct: 141 SRQLSQREKQVLRGLCRGQSNKEIARALDLQEVTIKLHVRTLCKKLNAKNRTQAALIARD 200

Query: 231 FGY 233
            G+
Sbjct: 201 AGF 203


>gi|91774802|ref|YP_544558.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91708789|gb|ABE48717.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 244

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L L   G  + EIAE+L LS +TV  ++     KL   +R +A+ +A   
Sbjct: 181 ETLSPREGEILGLVAQGMANREIAEQLHLSRYTVECHIKHIYRKLAVSSRTKAVHEARSR 240

Query: 232 GYI 234
           G +
Sbjct: 241 GLL 243


>gi|317125782|ref|YP_004099894.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589870|gb|ADU49167.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM
           43043]
          Length = 978

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 43/139 (30%), Gaps = 5/139 (3%)

Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-----HGACYQ 155
              L++    G +                              +          H A  +
Sbjct: 836 ERALAMDRRMGAVTHQAETLAAWSRHRARVSGTTAGPSAAGLADEAGALARRIGHWAVLR 895

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            +                LTERE   L+L  +G ++ EI E+L LS +T   ++ S   K
Sbjct: 896 DLDTVPAPDAVHPPLPNGLTEREVDVLRLVAEGLSNREIGERLFLSANTAANHVRSILGK 955

Query: 216 LDAVNRIQAIAKAIRFGYI 234
             A NR +A   A   G +
Sbjct: 956 TAAPNRTKAAIFATEHGLL 974


>gi|298290097|ref|YP_003692036.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926608|gb|ADH87417.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 222

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LT ++   L +  +G  +++IA +LG+S  TV A++ +   KL   +R QA+  A
Sbjct: 150 ARLATLTPQQVRVLMMLSEGLLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVIAA 209


>gi|291485935|dbj|BAI87010.1| hypothetical protein BSNT_05150 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 200

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+LA  G T+++I  +L LS  TV  Y+     KL A NR +A + A   G
Sbjct: 139 PLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLHAKNRTEAASIAEEKG 198

Query: 233 YI 234
           +I
Sbjct: 199 WI 200


>gi|291301112|ref|YP_003512390.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570332|gb|ADD43297.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 215

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 155 QVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           ++I  F +            LT RE   L     G T+ EIA +L ++  TV A+L S  
Sbjct: 135 RLIAAFAQTHTSPPPQPIERLTAREEEVLVSVAQGRTNNEIASELYITQSTVKAHLASLM 194

Query: 214 VKLDAVNRIQAIAKAIRFG 232
            KL A NR++    A   G
Sbjct: 195 RKLGARNRVEVAMWAHETG 213


>gi|207722648|ref|YP_002253084.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 201

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE   L  +  G TS EIA  LGLS  TV+ ++ +A  KL    RI+A+ KA   G
Sbjct: 138 PLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAG 197

Query: 233 YI 234
            I
Sbjct: 198 II 199


>gi|254382674|ref|ZP_04998032.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194341577|gb|EDX22543.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 233

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           + A         +        +     LT RE   L     G +++ IA +L +S  TV 
Sbjct: 141 LIATFLAQGGREERAAATGAHAQQLAALTVREREVLVHVAAGLSNDGIAGRLEVSPLTVK 200

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  A  KL A +R Q +  A   G +
Sbjct: 201 THVNRAMAKLGARDRAQLVVIAYESGLV 228


>gi|134099595|ref|YP_001105256.1| putative transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291009580|ref|ZP_06567553.1| putative transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133912218|emb|CAM02331.1| putative transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 285

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                +GDD L      +  +      E+ V+    +++            ++       
Sbjct: 126 RQRTHFGDDVLRAAERVVRRVERDIAVEQEVLRRLARMTAPATEP---RTALS---PGEA 179

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
            +    +      +            C +V             A   L+ RET  L L  
Sbjct: 180 DELCTELLAIAATIEDEGTRGRLLEVCRRVKAHDGRYRHGTRPA---LSPRETEVLALVA 236

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T++ +A +LGL  +TV +YL SA  KLDA NR+QA+ +A + G I
Sbjct: 237 TGCTNDAVARRLGLLPNTVKSYLKSAMKKLDATNRVQAVNRARQAGLI 284


>gi|146310654|ref|YP_001175728.1| transcriptional regulator FimZ [Enterobacter sp. 638]
 gi|145317530|gb|ABP59677.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 210

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDF----LELFKKRSSAARNLTE 176
               + G   F S+   L+   N V +   G  +               K +     L+ 
Sbjct: 93  GRAMRAGANGFVSKRKDLSDIYNAVEMLLSGYSFFPYETLSFINHHGSHKGALNDMPLSN 152

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE + L+   +G +++EIAE+L LS  T++A+  +   KL     ++ I  A     +
Sbjct: 153 REVTVLRFLANGLSNKEIAEQLLLSNKTISAHKSNIYTKLGVQTIVELIDYAKAHELL 210


>gi|118602974|ref|YP_904189.1| two component LuxR family transcriptional regulator [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567913|gb|ABL02718.1| two component transcriptional regulator, LuxR family [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 209

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           +      + + D L   +    +  +LT RE         GY+++ IA +LG+S  TV  
Sbjct: 125 DMTYILAKALRDELTDNE---PSFDSLTSREKEVACQVSSGYSNKVIARELGISDGTVKL 181

Query: 208 YLGSATVKLDAVNRIQAIAK 227
           ++ S   KL   +R++    
Sbjct: 182 HVKSILKKLSLSSRVEVAVM 201


>gi|56459425|ref|YP_154706.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56178435|gb|AAV81157.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 198

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           E+I      C        EL  +       LTE+E   L+LA  G +++ IAE+L ++  
Sbjct: 108 ELIASLQRVCLGEQVISNELLLQALGQHDPLTEKERKALRLASQGLSTQAIAEQLFIAPG 167

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T   YL  A  KL A NR +A   A + G++
Sbjct: 168 TARNYLSEAINKLHASNRTEAARIAHQKGWL 198


>gi|88855004|ref|ZP_01129669.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88815532|gb|EAR25389.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 221

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L L G G T+ EI  KL LS  T   ++     KL A +R+Q +  A   G +
Sbjct: 156 TDREREVLALVGQGLTNAEIGVKLFLSPLTAKTHVSRIMAKLAARDRVQLVVIAYETGLV 215


>gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 201

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE   L  +  G TS EIA  LGLS  TV+ ++ +A  KL    RI+A+ KA   G
Sbjct: 138 PLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAG 197

Query: 233 YI 234
            I
Sbjct: 198 II 199


>gi|293605159|ref|ZP_06687548.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292816415|gb|EFF75507.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 218

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 10/138 (7%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD--- 159
           +L+ +L       A +   +          +       L  +   E        + +   
Sbjct: 79  ELTAQLHERYPQIAVLVLTMHNNPEYMVQAVKAGARGYLLKDEPAEEIVTAISAVMEGRS 138

Query: 160 ------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                  L L +  S+ A  LT+RE   L+    G  +++IA  LGLSV TV  +  +  
Sbjct: 139 YFSASVALRLSQ-ASAPATLLTQRERDVLRHIASGQANKQIAHALGLSVRTVETHRLNIK 197

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL    + + I  A+  
Sbjct: 198 RKLGIDGQAELIKYAVEN 215


>gi|293369467|ref|ZP_06616050.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|292635465|gb|EFF53974.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
          Length = 219

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+ E + L+    G T++EIA +  LS HT+N++  +   KL   N  +A   A+R G 
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 234 I 234
           +
Sbjct: 212 V 212


>gi|288919627|ref|ZP_06413956.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349025|gb|EFC83273.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 218

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K+R+     LT+RE   L+L   G T+ EIA +L +S+ T   ++ S   K+ A NR++
Sbjct: 146 SKRRTQPIEPLTQREEEVLKLVAVGRTNAEIAAELFISLTTAKTHVASLLAKIGARNRVE 205

Query: 224 AIAKAIRFG 232
               A   G
Sbjct: 206 IAMWAYDTG 214


>gi|237722378|ref|ZP_04552859.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|260171068|ref|ZP_05757480.1| transcriptional regulator [Bacteroides sp. D2]
 gi|299146395|ref|ZP_07039463.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|315919388|ref|ZP_07915628.1| transcriptional regulator [Bacteroides sp. D2]
 gi|229448188|gb|EEO53979.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|298516886|gb|EFI40767.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|313693263|gb|EFS30098.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 219

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+ E + L+    G T++EIA +  LS HT+N++  +   KL   N  +A   A+R G 
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 234 I 234
           +
Sbjct: 212 V 212


>gi|228942499|ref|ZP_04105035.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975433|ref|ZP_04135988.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982066|ref|ZP_04142358.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777604|gb|EEM25879.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784227|gb|EEM32251.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817182|gb|EEM63271.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 189

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 36/61 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 128 PLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 187

Query: 233 Y 233
           +
Sbjct: 188 W 188


>gi|134288318|ref|YP_001110481.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134132968|gb|ABO59678.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 353

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    LT +E    +L   G T + IA++LG+S  TV  +L S   KL   N+ Q    
Sbjct: 291 NAPLDGLTPKELQVSRLFAQGMTYKAIAKQLGMSPATVRHHLRSIYTKLSINNKTQIARL 350


>gi|119490748|ref|ZP_01623080.1| regulatory protein, LuxR:Tetratricopeptide [Lyngbya sp. PCC 8106]
 gi|119453732|gb|EAW34890.1| regulatory protein, LuxR:Tetratricopeptide [Lyngbya sp. PCC 8106]
          Length = 121

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NL+ RE S  +L   G  ++ I ++LG+S  TV  ++     KLD  +R +  A+ I   
Sbjct: 58  NLSPREQSIARLVAQGLPNKCIGKELGISPWTVATHIRRVFKKLDVNSRAEMTARLIHSN 117

Query: 233 YI 234
            +
Sbjct: 118 LL 119


>gi|37681305|ref|NP_935914.1| LuxR family transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200056|dbj|BAC95885.1| transcriptional regulator, LuxR family [Vibrio vulnificus YJ016]
          Length = 215

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +     LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+
Sbjct: 146 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 205

Query: 226 AKAIRF 231
               + 
Sbjct: 206 ILLQQL 211


>gi|312129464|ref|YP_003996804.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311906010|gb|ADQ16451.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 212

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            L+ RE    +L  +G T+ EIA+KL LSV TV  +  +   KL+  N    +   +  
Sbjct: 148 KLSSREVDIARLIMEGLTNIEIADKLFLSVRTVETHRKNILAKLNLKNTASLVKYLMEN 206


>gi|299536275|ref|ZP_07049588.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis
           ZC1]
 gi|298728261|gb|EFI68823.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis
           ZC1]
          Length = 243

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            +T+RE   L+    G  + EIA++L +S +T+  +L +   K    NR Q +AK ++
Sbjct: 181 EMTDREREVLKFVFKGLKNIEIAKQLFVSENTIKKHLQNLYRKFQVTNRTQLLAKCLK 238


>gi|298717364|ref|YP_003730006.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Pantoea vagans C9-1]
 gi|298361553|gb|ADI78334.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Pantoea vagans C9-1]
          Length = 206

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175
             PV +   K G   F ++   +  + +++A     ++    +   ++R       + LT
Sbjct: 85  TIPVTVRAMKTGAYEFLTK--PVDPDRMLQAVAEALRIAEQNMASSEERREIFQRHQTLT 142

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE+  + LA  G  +++IA ++G+S  T   +      K++A +    +  A R   
Sbjct: 143 PRESEVMLLAISGLLNKQIAAEMGVSEITAKVHKRRVMEKMNARSLTDLVRAAERLNI 200


>gi|296102946|ref|YP_003613092.1| sgAB operon transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057405|gb|ADF62143.1| sgAB operon transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 216

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|294054984|ref|YP_003548642.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614317|gb|ADE54472.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 215

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 37/79 (46%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++ D +   K + S    LT+RE   LQL  +  ++ EIA KL +SV T   +  +   K
Sbjct: 132 LLRDAMADPKSKESGINILTKRERQILQLIAESNSTREIASKLDISVKTAENHRTNLMRK 191

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           LD  +       AI  G I
Sbjct: 192 LDLHDVASLTRYAINHGLI 210


>gi|291298065|ref|YP_003509343.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567285|gb|ADD40250.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 204

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 46/103 (44%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V F       A  +      AC  ++ D         +    LT RE   L +   G T 
Sbjct: 102 VSFMGTCASAAQFLESVRQIACGHLVMDSDVALGLLRANHSPLTAREREVLSITHGGATP 161

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EIA KL LSV TV  YL +A  KL A NRI+AI  A   G+I
Sbjct: 162 KEIASKLQLSVGTVRNYLANACAKLGARNRIEAIRVAQSAGWI 204


>gi|289626196|ref|ZP_06459150.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648347|ref|ZP_06479690.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330868455|gb|EGH03164.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 909

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   L L   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 845 SDCLSVRELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKV 904

Query: 231 FGYI 234
            G +
Sbjct: 905 LGLL 908


>gi|229819214|ref|YP_002880740.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565127|gb|ACQ78978.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 209

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFL-ELFKKRSSAARNLTERET 179
           L     GYV+  +    L   V   A         V    +  +  ++  A   L+ RE 
Sbjct: 94  LDAGARGYVLKDAPREELFRAVRAVADGETFLAPSVAGLLVSRVRARQQPAPAALSGREV 153

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L  DG T+ + A+ LG++  TV  +L     KL   +R  A+A   R G +
Sbjct: 154 DVLRLVADGRTNRQAAQLLGVTEATVKTHLLHVYAKLGVPDRAAAVAAGYRSGLL 208


>gi|219850507|ref|YP_002464940.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219544766|gb|ACL26504.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 213

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 15/158 (9%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-----LMLANEVI 146
           +       S       L         +   +          +               E+I
Sbjct: 53  LDLSLTNSSGLAAIQSLRAAAPQARILVLTMHDDEGYVRQALAAGAHGYVLKRAADAELI 112

Query: 147 IEAH-------GACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
                           +    LE      + ++   +L+ERE   L L   GYT+ EIA 
Sbjct: 113 AAIRAVLRGELYIHPALTRRLLEDILPQPQPTNPWESLSEREREVLVLVARGYTAAEIAG 172

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LS  TV  Y      KL   +R   +  A+    +
Sbjct: 173 QLNLSPKTVETYRTRGMEKLGLRSRAALVQFALDHNLL 210


>gi|88191939|pdb|1ZLK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain-Dna
           Complex
 gi|88191940|pdb|1ZLK|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain-Dna
           Complex
 gi|185177931|pdb|3C57|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
           Crystal Form Ii
 gi|185177932|pdb|3C57|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
           Crystal Form Ii
          Length = 95

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT++E + L L  +G T+++IA+++ L+  TV  Y+     KL    R QA   A 
Sbjct: 24  PLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFAT 83

Query: 230 RF 231
             
Sbjct: 84  EL 85


>gi|304321086|ref|YP_003854729.1| putative two-component response regulator protein [Parvularcula
           bermudensis HTCC2503]
 gi|303299988|gb|ADM09587.1| putative two-component response regulator protein [Parvularcula
           bermudensis HTCC2503]
          Length = 217

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 154 YQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             ++   L               LT+RE   L+L  +G T++ IA +L +S  TV A++ 
Sbjct: 132 QALLAAVLTPKAAAPPEYHLVERLTDREREVLRLISEGKTNKAIARELVISPATVKAHVE 191

Query: 211 SATVKLDAVNRIQAIAKAIR 230
               KL A +R QA    +R
Sbjct: 192 RCLAKLGAADRTQAAVMMVR 211


>gi|320173627|gb|EFW48819.1| Transcriptional regulatory protein UhpA [Shigella dysenteriae CDC
           74-1112]
          Length = 196

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169
           A I   V             G   F S+      E+I   H         +L        
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAIKL 130

Query: 170 AA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           A+     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGHQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|269127816|ref|YP_003301186.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268312774|gb|ACY99148.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 201

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +    A  +VI   L   +  ++A   LT RE   L+LAG+G +  +IA+ L L++ TV 
Sbjct: 115 LRRVAAGERVIDADLAFAE-LAAADSPLTPRELEVLRLAGEGASVAQIADTLVLTIGTVR 173

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L     K+ A NR+ AI  A   G++
Sbjct: 174 NHLSRINRKIGARNRVHAIRIAESAGWL 201


>gi|300784547|ref|YP_003764838.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794061|gb|ADJ44436.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 186

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R L+ RE   LQL  DG +++EI E+L LS  TV ++L     KL   +R Q +A A+
Sbjct: 121 TPRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALAM 180

Query: 230 RFGYI 234
           R G I
Sbjct: 181 RAGVI 185


>gi|220904084|ref|YP_002479396.1| LuxR family two component transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868383|gb|ACL48718.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 223

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE    +L  DG++ + IA  L +S  TV  +  +   KL A +    +  AIR G
Sbjct: 160 ALSPREKEIFRLLADGHSVKAIAGDLHISPKTVETHKYNLLTKLQAGSVGDLVKIAIRHG 219

Query: 233 YI 234
            +
Sbjct: 220 LV 221


>gi|223934862|ref|ZP_03626781.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896315|gb|EEF62757.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 213

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +LT RE   LQL  +G T+++IA +LG+S  TV  +      KL   +       A+
Sbjct: 140 RTEHLTSREAEVLQLIAEGQTNKQIAFELGISAKTVEKHRQQVMNKLKIHDVAGLTRYAL 199

Query: 230 RFGYI 234
             G I
Sbjct: 200 SKGII 204


>gi|186474727|ref|YP_001863698.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184198686|gb|ACC76648.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 210

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 15/172 (8%)

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +    S +  +    +       S   L  R+         +   +          +  
Sbjct: 39  VIDRLRSCV--VDLLLLDMTMPGISGVDLIRRVRVEQPSLPVLVLSIHDEAQVASRALRA 96

Query: 136 SEFLMLANEVIIEAHGACYQVITD-------------FLELFKKRSSAARNLTERETSCL 182
                L  +   +   A  + +TD               E  +        L++RE   L
Sbjct: 97  GATGYLTKDSDPDVLLAAIRKLTDGGRFIDPKLVDGMIFETQRGDVPPHEVLSDREFQVL 156

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Q+   G +  EIA+   LS  T++ Y      KL   N  + I  AIR G I
Sbjct: 157 QMLAAGRSINEIADACALSAKTISTYKTRLMQKLGFSNNAEVIRYAIRHGLI 208


>gi|150377712|ref|YP_001314307.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150032259|gb|ABR64374.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 218

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEI 194
               + E ++EA     +        + +  +      +LT RE     L   G  +++I
Sbjct: 102 EKPASREALLEAVDRALRRCDARRAEYDRIHALKARLVSLTPREFEVFGLITRGRRNKQI 161

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  L  S  TV A+  SA  KL   +  +A++ A R G +
Sbjct: 162 AYDLSTSERTVKAHRRSAMEKLGVGSLAEAVSIAERLGLL 201


>gi|127512655|ref|YP_001093852.1| LuxR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637950|gb|ABO23593.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4]
          Length = 208

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           ++         +       +++   A NLT RE   LQ    G T+ +IA +L +S  T+
Sbjct: 118 VLRGQTVIPHALLSA-SADQEQLDGADNLTIREREVLQALLSGSTNVDIANQLFVSESTI 176

Query: 206 NAYLGSATVKLDAVNRIQAIAKA 228
             +L     K+   +R QAIA A
Sbjct: 177 KTHLYRVFRKIGVSSRGQAIAWA 199


>gi|331649340|ref|ZP_08350426.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           M605]
 gi|330909574|gb|EGH38088.1| putative regulator [Escherichia coli AA86]
 gi|331041838|gb|EGI13982.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           M605]
          Length = 200

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|226304519|ref|YP_002764477.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183634|dbj|BAH31738.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 220

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                       +   RS +   L+ RE   +QL   G  + +IA+ L L   TV +++ 
Sbjct: 133 LIVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHIS 192

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL    R+Q +  A R   I
Sbjct: 193 NICKKLQVRTRVQIVIWAYRNNVI 216


>gi|222152374|ref|YP_002561549.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113185|emb|CAR40638.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 226

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L++ E   +Q  G G ++ EIA+KL LS  TV  YL +   KL   +R Q    +++ 
Sbjct: 155 ESLSKAEWKIIQQVGFGLSNREIAQKLFLSEGTVRNYLSNVLAKLQLRDRTQLAIWSVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|193061833|ref|ZP_03042930.1| transcriptional regulator, LuxR family [Escherichia coli E22]
 gi|194428712|ref|ZP_03061249.1| transcriptional regulator, LuxR family [Escherichia coli B171]
 gi|209920980|ref|YP_002295064.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|256020867|ref|ZP_05434732.1| putative transcriptional regulator [Shigella sp. D9]
 gi|260846309|ref|YP_003224087.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli O103:H2 str. 12009]
 gi|307314352|ref|ZP_07593959.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|331670350|ref|ZP_08371189.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA271]
 gi|332282081|ref|ZP_08394494.1| transcriptional regulator [Shigella sp. D9]
 gi|192932623|gb|EDV85220.1| transcriptional regulator, LuxR family [Escherichia coli E22]
 gi|194413295|gb|EDX29580.1| transcriptional regulator, LuxR family [Escherichia coli B171]
 gi|209914239|dbj|BAG79313.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|257761456|dbj|BAI32953.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|306906067|gb|EFN36587.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|315062799|gb|ADT77126.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli W]
 gi|323376613|gb|ADX48881.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|324021178|gb|EGB90397.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|331062412|gb|EGI34332.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA271]
 gi|332104433|gb|EGJ07779.1| transcriptional regulator [Shigella sp. D9]
          Length = 200

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I+  L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 ISRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|183221890|ref|YP_001839886.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911960|ref|YP_001963515.1| two component response regulator receiver protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776636|gb|ABZ94937.1| Receiver component of a two-component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167780312|gb|ABZ98610.1| Putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 212

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 40/79 (50%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            +  F    K +++   +LT+RET  LQL   G     IAE L LS HTV+ Y+ S   K
Sbjct: 134 ALRVFSSFRKVKTNEEESLTDRETQILQLLVKGKKISSIAELLLLSEHTVHGYVKSIYKK 193

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   NR++   KA +   +
Sbjct: 194 LMVHNRVELTLKAQKLSLL 212


>gi|325282407|ref|YP_004254948.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314216|gb|ADY25331.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 222

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 43/96 (44%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + A E ++    A   +     +  +       +L ERET  L+L   G+++++IA +
Sbjct: 123 RRVAAGEALLNPDMAQNVLDDFRDKREELPQEKHNDLNERETMILKLLAQGFSNQDIALR 182

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +S  TV   L     KL   NR QA   AIR G 
Sbjct: 183 LDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 218


>gi|282879611|ref|ZP_06288342.1| hemerythrin HHE cation binding domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306559|gb|EFA98588.1| hemerythrin HHE cation binding domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 318

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   +     G T++EIA+ L +S++TV  +  +   KL   +       AI  
Sbjct: 249 EILSEREKEVIVSLVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPSGLTIYAIVN 308

Query: 232 GYI 234
             I
Sbjct: 309 NLI 311


>gi|271969982|ref|YP_003344178.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513157|gb|ACZ91435.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                +         +    A+ LT RET  +Q    G T++EIA++L +S+ TV  Y+ 
Sbjct: 131 RLLRHLADRGARAKARM--PAQPLTARETEIVQAIARGRTNQEIADELFISLSTVKGYVS 188

Query: 211 SATVKLDAVNRIQAIAKAIR 230
               KL   +R++ +A A  
Sbjct: 189 GIMAKLGVRSRVKIVAWAWE 208


>gi|160947148|ref|ZP_02094315.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270]
 gi|158446282|gb|EDP23277.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270]
          Length = 199

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             LT++E   L+    G +++EI+EKL LS  TV  Y+     KL+  +R Q    
Sbjct: 140 ELLTQKEIEILEQIAKGLSNKEISEKLFLSEGTVRNYISGILEKLELRDRTQLAIY 195


>gi|297625366|ref|YP_003687129.1| LuxR family transcriptional regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921131|emb|CBL55678.1| two-component response regulator LuxR [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 236

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 30/65 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   L L G G  + EIAE L L   TV  ++G    KL   +R+  +  A 
Sbjct: 168 RLEALTDREREVLTLVGQGLNNTEIAETLFLGSATVKTHIGHILAKLQLRDRVHMVVFAY 227

Query: 230 RFGYI 234
             G +
Sbjct: 228 DAGLV 232


>gi|271962179|ref|YP_003336375.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505354|gb|ACZ83632.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSS------AARNL 174
           L     G+++  +   ML+  +   A+        +    L  F               L
Sbjct: 97  LRAGARGFLLKNAGAEMLSQAIHAAANGDALIAPSITARLLSAFAGSGPVSPPAKPVETL 156

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           T+RE   L     G T+ EIA++  +S+ TV +++ S   KL A NR++    A  
Sbjct: 157 TDREEQILATVARGRTNSEIADEFYISLSTVKSHIASLMAKLGARNRVEIAMWAYE 212


>gi|260779547|ref|ZP_05888437.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604356|gb|EEX30660.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 211

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+    + 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207


>gi|238757449|ref|ZP_04618634.1| hypothetical protein yaldo0001_29430 [Yersinia aldovae ATCC 35236]
 gi|238704211|gb|EEP96743.1| hypothetical protein yaldo0001_29430 [Yersinia aldovae ATCC 35236]
          Length = 210

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I+    L +   ++   LT RE   L+L  +G  +  IA++L +S  TV  +  +   KL
Sbjct: 132 ISRVNRLTQNSDNSRTALTPRERQVLKLITEGACNRIIADRLSISKKTVETHRLNMMKKL 191

Query: 217 DAVNRIQAIAKAIRFGY 233
           D     + I  + R G 
Sbjct: 192 DVHKVAELINWSYRLGM 208


>gi|227511558|ref|ZP_03941607.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227085203|gb|EEI20515.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 202

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++A   L+++E   L+ A DG T++EIAEKL LS  TV  YL +   KL   NR++A+  
Sbjct: 135 NAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNM 194

Query: 228 AIRFGY 233
           A    +
Sbjct: 195 AKNNKW 200


>gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 319

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|153806156|ref|ZP_01958824.1| hypothetical protein BACCAC_00411 [Bacteroides caccae ATCC 43185]
 gi|149130833|gb|EDM22039.1| hypothetical protein BACCAC_00411 [Bacteroides caccae ATCC 43185]
          Length = 203

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +   +    +   L++RE   +     G T++EIAEKL LS+HTV  +  + + KL   +
Sbjct: 122 MSSEEDEVDSQDALSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHS 181

Query: 221 RIQAIAKAIRFGYI 234
                  AI    +
Sbjct: 182 AAGLTIYAIVNKLV 195


>gi|31790500|emb|CAD56676.1| putative regularory protein [Enterobacter sakazakii]
          Length = 216

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|186682209|ref|YP_001865405.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464661|gb|ACC80462.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 232

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +  +         S  +  +T RE   L L G G T+ EIA++L ++  TV  ++ 
Sbjct: 140 LLVTEAASASANQNSASSKPSE-ITAREQEVLCLIGVGATNREIAQQLYITEGTVKTHVT 198

Query: 211 SATVKLDAVNRIQAIAKA 228
           S   +L+  NR Q    A
Sbjct: 199 SILSRLNLKNRSQLAIYA 216


>gi|298246648|ref|ZP_06970453.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549307|gb|EFH83173.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 920

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             S     LT RE   L L  +G +++ IAE+L +S+ TV  ++GS  +KL A NR  A+
Sbjct: 852 PASPLLEPLTPREQEVLYLLAEGASNQVIAERLVVSLTTVKKHVGSLFLKLAADNRTHAV 911

Query: 226 AKAIRFGYI 234
           A A     +
Sbjct: 912 ALARELSLL 920


>gi|254786770|ref|YP_003074199.1| positive regulator AgmR [Teredinibacter turnerae T7901]
 gi|237687202|gb|ACR14466.1| positive regulator AgmR [Teredinibacter turnerae T7901]
          Length = 212

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT ++ + L+   +G +++EIA +LG+S  T   Y+     +LDA NR QA+  A R G 
Sbjct: 144 LTTQQRATLRYLAEGLSNKEIAIQLGVSPSTAKEYVSKVIERLDATNRTQAVLAAQREGL 203

Query: 234 I 234
           +
Sbjct: 204 L 204


>gi|223940236|ref|ZP_03632096.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891123|gb|EEF57624.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 222

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            +    + I         RS     L+ RE   L+L   G   +EIA+ LG+++ TV  +
Sbjct: 145 LNSLIARKIVQHFHHQPSRSGKEHPLSVREREVLELLSKGLPYKEIADMLGVNIETVRKH 204

Query: 209 LGSATVKLDAVNRIQAIA 226
             +   KL   +R +A+ 
Sbjct: 205 CHNIYEKLQVSSRTEAVV 222


>gi|87200639|ref|YP_497896.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87136320|gb|ABD27062.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 207

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 126 FHKNGYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               G V F  +   L   E  I A            E  ++       LT  +   L  
Sbjct: 95  ARAFGAVGFLRKDADLTRIEDAICAALDGGAAPAAAAEPIEQVRREVAGLTPTQLKVLLA 154

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             +G  +++IA  LG+S  TV A++ +   KLD  NR QA   A   G 
Sbjct: 155 VLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQNRTQAALVARSLGL 203


>gi|91793679|ref|YP_563330.1| regulatory protein, LuxR [Shewanella denitrificans OS217]
 gi|91715681|gb|ABE55607.1| transcriptional regulator, LuxR family [Shewanella denitrificans
           OS217]
          Length = 210

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L         +LT RE   LQ    G T+ +IA +L +S  T+  +L  A  K+   +R 
Sbjct: 136 LHDDTEDETDSLTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRAFRKIGVSSRG 195

Query: 223 QAIAKA 228
           QAIA A
Sbjct: 196 QAIAWA 201


>gi|302536520|ref|ZP_07288862.1| predicted protein [Streptomyces sp. C]
 gi|302445415|gb|EFL17231.1| predicted protein [Streptomyces sp. C]
          Length = 224

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + A   L+ RE   L L     ++ +IA +LG++  TV  +L +   KL+AV+R+ A+ K
Sbjct: 148 APAPSGLSPREREVLTLVAHAMSNRQIASELGVAEGTVKRHLRNIFEKLEAVSRVDAVNK 207

Query: 228 AIRFGYI 234
           AI    I
Sbjct: 208 AIDAQLI 214


>gi|291303040|ref|YP_003514318.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572260|gb|ADD45225.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 215

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A     +  TD L            LT RE   L L   G +++EI  +L L+  TV A+
Sbjct: 130 AGRVIAEFDTDRLTRGTGAQRKVAELTPRENEVLGLIASGLSNQEIGRRLHLTEGTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   +L   NR++A     + G 
Sbjct: 190 VSAILQRLGVRNRVEAAIIGYQAGL 214


>gi|160888907|ref|ZP_02069910.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492]
 gi|270293670|ref|ZP_06199872.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479365|ref|ZP_07938499.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|156861806|gb|EDO55237.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492]
 gi|270275137|gb|EFA20997.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904439|gb|EFV26259.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 220

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 151 GACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
             C  V    L      S          LT  E S L+    G T++EIA +  LS HTV
Sbjct: 125 FICNHVSNLLLAGNGSSSPTHPTIKDDLLTTAERSILKEIALGKTTKEIAAERNLSFHTV 184

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           N++  +   KL   N  +A   A++ G +
Sbjct: 185 NSHRKNIFRKLGVNNAHEATKYAMKAGIV 213


>gi|50954584|ref|YP_061872.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951066|gb|AAT88767.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 225

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 4/135 (2%)

Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
             +         AG + F ++               +    ++  V           +  
Sbjct: 89  FDLDEYAFGGLRAGASGFLLKDARPDDLTAAIRAVAAGDAAVSGRVTRAMLELFADRLPT 148

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             E        A  LT RE   L    DG T+ EI     L+  TV  ++G    KL   
Sbjct: 149 TTESAAPGGDPAAALTPREREILLAIADGLTNGEIGATFHLTESTVKTHVGRVLSKLHLR 208

Query: 220 NRIQAIAKAIRFGYI 234
           +R+ A+  A   G I
Sbjct: 209 DRVHAVIFAYDNGLI 223


>gi|319793244|ref|YP_004154884.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315595707|gb|ADU36773.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 229

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
            L    +      +  L+   +   +A              F   +     L+ RE+  L
Sbjct: 119 NLRAGGSPMSPVIARQLLRRWQTRADASQPAPASPGASAARFSTVAP--ERLSPRESEVL 176

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   G+T  E+  ++G+S  TV +++ +   KLD  N+ +A+ +A   G++
Sbjct: 177 GLVSRGFTYVEVGAQMGVSASTVQSHIRNIYGKLDVHNKSEAVFEARNLGWL 228


>gi|290955347|ref|YP_003486529.1| two-component system regulator [Streptomyces scabiei 87.22]
 gi|260644873|emb|CBG67959.1| putative two-component system regulator [Streptomyces scabiei
           87.22]
          Length = 236

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                 +  R LT RE   L+L  +G ++ E+AE LG++  T   ++     K+ A +R 
Sbjct: 157 ADAADLAGLRGLTAREAQVLRLIAEGLSNAELAELLGIAESTAKTHVKRVLHKIGARDRA 216

Query: 223 QAIAKAIRFGY 233
           QA+  A R G 
Sbjct: 217 QAVVLAYRSGL 227


>gi|253989299|ref|YP_003040655.1| nitrate/nitrite response regulator protein narp [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780749|emb|CAQ83911.1| nitrate/nitrite response regulator protein narp [Photorhabdus
           asymbiotica]
          Length = 211

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L    K       LT+RE   L+    G T++E+A+ L +S  TV  ++ +   KL+ 
Sbjct: 133 QHLANRHKHVDPLSELTKRELDVLKEVSSGMTNKEVADVLFISEETVKVHIRNLLKKLNV 192

Query: 219 VNRIQAIAKAIRF 231
            +R+ A    ++ 
Sbjct: 193 RSRLAATIMYLQH 205


>gi|215489014|ref|YP_002331445.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215267086|emb|CAS11532.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|323189591|gb|EFZ74871.1| transcriptional regulatory protein uhpA [Escherichia coli RN587/1]
          Length = 196

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter
           baumannii 1656-2]
 gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 319

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|163735876|ref|ZP_02143304.1| transcriptional regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161390812|gb|EDQ15153.1| transcriptional regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 239

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             + +      LT ++   ++L   G  +++IA +L L+  TV A++ +   +L   NR 
Sbjct: 154 ADEFQHPKLAELTPQQQRIMRLICFGKPNKQIAYELDLAEATVKAHITALLRRLGVRNRT 213

Query: 223 QAI-----AKAIRFG 232
           QA+     A A + G
Sbjct: 214 QAVVLVEGAMAAQRG 228


>gi|26250153|ref|NP_756193.1| putative transcriptional regulator YhjB [Escherichia coli CFT073]
 gi|110643767|ref|YP_671497.1| transcriptional regulator YhjB [Escherichia coli 536]
 gi|191170596|ref|ZP_03032149.1| transcriptional regulator, LuxR family [Escherichia coli F11]
 gi|227883679|ref|ZP_04001484.1| transcriptional regulator YhjB [Escherichia coli 83972]
 gi|300971326|ref|ZP_07171407.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300976738|ref|ZP_07173557.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|301046587|ref|ZP_07193728.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|26110582|gb|AAN82767.1|AE016768_185 Hypothetical transcriptional regulator yhjB [Escherichia coli
           CFT073]
 gi|110345359|gb|ABG71596.1| hypothetical transcriptional regulator YhjB [Escherichia coli 536]
 gi|190909404|gb|EDV68990.1| transcriptional regulator, LuxR family [Escherichia coli F11]
 gi|222035230|emb|CAP77975.1| HTH-type transcriptional regulator yhjB [Escherichia coli LF82]
 gi|227839259|gb|EEJ49725.1| transcriptional regulator YhjB [Escherichia coli 83972]
 gi|281180558|dbj|BAI56888.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|300301451|gb|EFJ57836.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|300308475|gb|EFJ62995.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|300411311|gb|EFJ94849.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|307555623|gb|ADN48398.1| hypothetical transcriptional regulator YhjB [Escherichia coli ABU
           83972]
 gi|312948079|gb|ADR28906.1| transcriptional regulator YhjB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315295417|gb|EFU54747.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1]
 gi|323966038|gb|EGB61478.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|324007328|gb|EGB76547.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2]
 gi|324014189|gb|EGB83408.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1]
 gi|327251163|gb|EGE62856.1| transcriptional regulator, LuxR family protein [Escherichia coli
           STEC_7v]
          Length = 200

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|37526610|ref|NP_929954.1| nitrate/nitrite response regulator protein NarP [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786042|emb|CAE15094.1| Nitrate/nitrite response regulator protein NarP [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 211

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L    K       LT+RE   L+    G T++E+A+ L +S  TV  ++ +   KL+ 
Sbjct: 133 QHLANRHKHVDPLSELTKRELDVLKEVSSGMTNKEVADVLFISEETVKVHIRNLLKKLNV 192

Query: 219 VNRIQAIAKAIRF 231
            +R+ A    ++ 
Sbjct: 193 RSRLAATIMYLQH 205


>gi|91975822|ref|YP_568481.1| response regulator FixJ [Rhodopseudomonas palustris BisB5]
 gi|91682278|gb|ABE38580.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 205

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL---ELFKKRSSAARNLTE 176
            P+ +   K G + F        ++ +I       ++  +      + +   +  ++L+ 
Sbjct: 88  VPLAVEAMKLGAIDFI--EKPFDDDRLIGMIETSLKLAGEEAKSEAVSQDIVARIQSLSP 145

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   ++    G +++ IA +  +S  T+  Y  +   K+ A +  + +  A+R G I
Sbjct: 146 RELQVMEGLIAGMSNKAIAREFDISPRTIEVYRANVMTKMQASSLSELVRMAMRGGVI 203


>gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624]
          Length = 319

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|297562938|ref|YP_003681912.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847386|gb|ADH69406.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 231

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +      A  +LT RE   L     GYT+ EI E+L LS+ TV  ++G    K  + +R+
Sbjct: 151 IDGDTRRAVASLTPREQEVLVAVALGYTNTEICERLVLSMPTVKTHVGHVLAKTGSRDRV 210

Query: 223 QAIAKAIRFGYI 234
           QA+  A R G +
Sbjct: 211 QAVLFAFRAGLV 222


>gi|254430257|ref|ZP_05043960.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197624710|gb|EDY37269.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 291

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   L     G ++ EIA  L LSV TV  +L +   KL A +R  A    +
Sbjct: 222 PLEPLTPRELEVLAQVARGCSNVEIAGSLYLSVDTVKTHLQNVLRKLPARDRAHAAVLGV 281

Query: 230 RFGYI 234
            +G I
Sbjct: 282 CWGLI 286


>gi|159028166|emb|CAO89773.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT  E   +QL   G  + EIA KL +S  T+ +++ +   K    NR +    AI 
Sbjct: 162 ELTPTELKVVQLVAQGLANREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELSQWAIE 219


>gi|315646876|ref|ZP_07899991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Paenibacillus vortex V453]
 gi|315277806|gb|EFU41130.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Paenibacillus vortex V453]
          Length = 100

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L L  +G ++EEIA+ L +S  TV  Y+ +   KL+  NR+QA+ K      I
Sbjct: 36  TKRELELLVLIMEGSSNEEIAQMLMISTGTVKRYIHNIYQKLEVKNRVQAVKKIKENHLI 95


>gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074670|gb|ADJ64069.1| LuxR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               + + ++++   +  +    LT R+   LQL  +G  ++EIA +L +S  T+  +  
Sbjct: 129 HISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTIETHRA 188

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               +LD  +    +  AIR G 
Sbjct: 189 QLMERLDIRDVPGLVRYAIRTGI 211


>gi|295131556|ref|YP_003582219.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|291375244|gb|ADD99098.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313771696|gb|EFS37662.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313810519|gb|EFS48233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313831559|gb|EFS69273.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313832545|gb|EFS70259.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314974910|gb|EFT19005.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977995|gb|EFT22089.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984592|gb|EFT28684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315095475|gb|EFT67451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327332792|gb|EGE74524.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327448413|gb|EGE95067.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448489|gb|EGE95143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328762067|gb|EGF75572.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
          Length = 224

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L   G+G T+ EIAE+L L+  TV  ++G    KL   +R+  +  A   
Sbjct: 158 ETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDA 217

Query: 232 GYI 234
           G +
Sbjct: 218 GLV 220


>gi|329667775|gb|AEB93723.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 224

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +  E   +Q  G G +++EIA KL LS  TV  Y+     KLD  +R Q    A++ G
Sbjct: 158 SRSEWCVIQQVGLGLSNKEIATKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQTG 215


>gi|288927583|ref|ZP_06421430.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330417|gb|EFC69001.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 318

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            NL+ERE   +     G T++EIA+ L +S++TV  +  +   KL   +       AI  
Sbjct: 249 DNLSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 NLV 311


>gi|260911714|ref|ZP_05918290.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634139|gb|EEX52253.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 318

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            NL+ERE   +     G T++EIA+ L +S++TV  +  +   KL   +       AI  
Sbjct: 249 DNLSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 NLV 311


>gi|171058086|ref|YP_001790435.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775531|gb|ACB33670.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 211

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 16/164 (9%)

Query: 87  IIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVI-- 133
             W    +      +    L   L         +   V          L     GY+   
Sbjct: 47  FAWDVAVLDYRMPGKGGIDLIKELRQRFPDRPVLVLSVCPEDQYAMRVLRAGAAGYLTKE 106

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYT 190
              E L+ A   +          + + L L             L++RE   + L   G  
Sbjct: 107 SAPEDLVNAIRKVARGGRFVSAALGEQLALSLSTGGDEPLHCRLSDREYQIMWLLASGKK 166

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             EIA++L LS +T++ Y      KLD  +  + +  AI    +
Sbjct: 167 VGEIAQQLFLSPNTISTYRKRILEKLDLKSNAELMRYAIGHQLV 210


>gi|110678226|ref|YP_681233.1| LuxR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109454342|gb|ABG30547.1| transcriptional regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 239

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             + +      LT ++   ++L   G  +++IA +L L+  TV A++ +   +L   NR 
Sbjct: 154 ADEFQHPKLAELTPQQQRIMRLICCGKPNKQIAYELDLAEATVKAHITALLRRLGVRNRT 213

Query: 223 QAI-----AKAIRFG 232
           QA+     A A + G
Sbjct: 214 QAVVLVEGALAAQRG 228


>gi|15596957|ref|NP_250451.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9947738|gb|AAG05149.1|AE004601_14 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 907

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183
                 +     +     +      G    +     +L     S   N  ++ RE   L+
Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ +IA+ + LS  T+  +L +   KL   +R QA+ K    G +
Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 245

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F       + +       ++     L  K      + T RE S LQL  +G  ++EI
Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEALPSKE-PVVHSFTPREASVLQLVAEGLMNKEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+     K    +R + +  A+    +
Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|327313477|ref|YP_004328914.1| LuxR family transcriptional regulator [Prevotella denticola F0289]
 gi|326945945|gb|AEA21830.1| transcriptional regulator, LuxR family [Prevotella denticola F0289]
          Length = 214

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             C       L            LT+ ET  L+    G T+ EIAEK   S HTVN +  
Sbjct: 124 FLCQHAADLLLAPAASLDRDVVKLTKTETEILKEIALGLTTREIAEKRFSSFHTVNTHRK 183

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N  +A+  A+R G +
Sbjct: 184 NIFRKLGVNNVHEAMRYAMRSGLV 207


>gi|307727191|ref|YP_003910404.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587716|gb|ADN61113.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 210

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 13/156 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       S   L  R+         +   +          +       +  +   +   
Sbjct: 53  LDMTMPGISGVDLIRRVRAERPSLPLLVLSIHNEAQVVSRALRAGATGYVTKDSNPDVLL 112

Query: 152 ACYQVITDFLELFKKR-------------SSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           A  + + +       +             +     L++RE   LQ+   G +  EIAE  
Sbjct: 113 AAIRRLAEGGRFIDPKLVEGIVFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIAEAF 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  T++ +      KL   N    I  AIR G +
Sbjct: 173 ALSAKTISTHKMRLMQKLGLANNADLIRYAIRHGLV 208


>gi|255323701|ref|ZP_05364829.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
 gi|255299191|gb|EET78480.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
          Length = 217

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173
           L     G+++ T+    L   V   A G      +V+ + + L        +        
Sbjct: 98  LRAGAVGFLLKTTAPEALVASVRAAAQGQQQLSPKVLENLVGLAATPPQPEQEMIQPSGL 157

Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE    QL   G ++ EIAE+L +S+ TV  ++     K+D  NR+  IA A+  
Sbjct: 158 AELSERENEIAQLVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IAIAVLG 216

Query: 232 G 232
           G
Sbjct: 217 G 217


>gi|237715864|ref|ZP_04546345.1| transcriptional regulator [Bacteroides sp. D1]
 gi|229443511|gb|EEO49302.1| transcriptional regulator [Bacteroides sp. D1]
          Length = 221

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             C  V    L       +A+      LT+ E + L+    G T++EIA +  LS HT+N
Sbjct: 127 YICNHVSNLLLSGASSPLAASSVDDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTIN 186

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  +   KL   N  +A   A+R G +
Sbjct: 187 SHRKNIFRKLGVNNVHEATKYAMRAGIV 214


>gi|182412651|ref|YP_001817717.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839865|gb|ACB74117.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 219

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 152 ACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               V+  F +  +  R+   + LT R    +QL  +G +++EIA  L LSV T+  +  
Sbjct: 132 ISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVKTIETHRM 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               +L   +    +  A+R G I
Sbjct: 192 HLMARLGLHDVAGVVRYALRTGLI 215


>gi|21230300|ref|NP_636217.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769706|ref|YP_244468.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992921|ref|YP_001904931.1| Putative transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21111849|gb|AAM40141.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575038|gb|AAY50448.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734681|emb|CAP52891.1| Putative transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 235

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      +  A +   +         V +    L   ++ +        
Sbjct: 86  APGDSHEATWLMPPRPAEMRDARLPIQLLGTTLGMVCVAWNDGRLAPGSDDLQALQAFAL 145

Query: 155 QVITDFLELFKKRS---------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E  +  +              L++RE   L L   G T+  +A +LG+S  TV
Sbjct: 146 LLPAMVAEPARPVATRRRKAVQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++     KL+  +R QA   A+  G 
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVHAGL 233


>gi|153947769|ref|YP_001402787.1| DNA-binding response regulator EsrB [Yersinia pseudotuberculosis IP
           31758]
 gi|170026132|ref|YP_001722637.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|152959264|gb|ABS46725.1| putative DNA-binding response regulator EsrB [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752666|gb|ACA70184.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
          Length = 210

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L      +     LT RE   L+L  +G  +  IA +L +S  TV  +  +   KL
Sbjct: 134 MVIKLTQGSDNTPPV--LTPRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKL 191

Query: 217 DAVNRIQAIAKAIRFGY 233
           D     + I  + R G 
Sbjct: 192 DVHKVAELIHWSYRLGL 208


>gi|126175697|ref|YP_001051846.1| response regulator receiver protein [Shewanella baltica OS155]
 gi|125998902|gb|ABN62977.1| transcriptional regulator, LuxR family [Shewanella baltica OS155]
          Length = 249

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 108 LEGGLLPFAGIAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
               L   + +   +R      +   ++ T    M+A E+  +             +L  
Sbjct: 110 ERDSLDQESAMLLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDG 169

Query: 166 KRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                + +      LT RE + +Q    G  ++EIA +L +S HTV A++ S   K  + 
Sbjct: 170 NNEMPSDSVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSR 229

Query: 220 NRIQAIAKA 228
           NR++ +  A
Sbjct: 230 NRVELLRWA 238


>gi|257054193|ref|YP_003132025.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584065|gb|ACU95198.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 214

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 35/68 (51%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +R      L+ERE S L+L G G ++ EIAE+L L+  TV  Y+ S   KL    R Q
Sbjct: 142 SPERPDPLDKLSERERSVLELIGQGLSNREIAERLFLAEKTVKNYVTSLLSKLGMRRRTQ 201

Query: 224 AIAKAIRF 231
           A A   R 
Sbjct: 202 AAAWVARH 209


>gi|170721339|ref|YP_001749027.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759342|gb|ACA72658.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 491

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFL---ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194
                V+ +A      +I        +   R   A   +LT RE   L L  +G   +EI
Sbjct: 390 EAIETVMQDASWFSQTLIEKLANAKRINTGRLPDASFTDLTRRERDVLALICEGLADKEI 449

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L L+++TV  ++ +   KLD  +R +AI  A     
Sbjct: 450 ATRLNLALNTVRNHVATVYSKLDVHSRSEAIVWARERRL 488


>gi|303237715|ref|ZP_07324275.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
 gi|302482167|gb|EFL45202.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
          Length = 203

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   GY ++EIA KL +S+ TV  +  +   KL   +       A+  GY
Sbjct: 138 LSNREIEVLSLVVQGYINKEIASKLCISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 197

Query: 234 I 234
           +
Sbjct: 198 V 198


>gi|296101486|ref|YP_003611632.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055945|gb|ADF60683.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 209

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 17/162 (10%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           I    +      E+   L  RL      F  I   +             G   + ++   
Sbjct: 48  IDVAVMDVAMPDENGLSLLKRLRQQRPTFRAIILSIYDTPAFVQSALDAGASGYLTKRCG 107

Query: 141 LANEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
              E +++A        H  C   +   L   +        LT RE    +L   G + +
Sbjct: 108 P--EELVQAVRTVGMGGHYLCADAV-KALRGGEPMPKVLEALTPREREVFELLVKGESVK 164

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  L LS  TV+ +  +   KL   + I  +  A+    +
Sbjct: 165 EIAYTLALSHKTVHVHRANVLGKLQCNSTIDLVHFALDNQLL 206


>gi|226311198|ref|YP_002771092.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226094146|dbj|BAH42588.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 228

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 12/181 (6%)

Query: 57  YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116
            D +   I NI ++      +         ++   +  E + E    L            
Sbjct: 58  LDQELCSIRNIRVDLRNMPLIQQAIREQRAVL---LDSEAIRELPPHLV------YGAPY 108

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNL 174
            +  P+  G +  GY   +      +               ++   L     R      L
Sbjct: 109 ALILPISYGPNVLGYAGISWHQDGCSGINHPLVQSLSAYCSMLGKVLATDSLR-PKTVKL 167

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   +Q    G + +E+A  +G+S  TV  Y+ SA  KL   NR Q +A AIR   I
Sbjct: 168 SRREVEVMQRMSWGESVKEMASWMGISEFTVQDYIKSALKKLGVQNRAQGVADAIRQRII 227

Query: 235 C 235
           C
Sbjct: 228 C 228


>gi|183600894|ref|ZP_02962387.1| hypothetical protein PROSTU_04501 [Providencia stuartii ATCC 25827]
 gi|188019220|gb|EDU57260.1| hypothetical protein PROSTU_04501 [Providencia stuartii ATCC 25827]
          Length = 256

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            L  + + I   N  +Y+          + L             I         D F   
Sbjct: 24  LLSWLSSFIAFDNAIVYSFEKDAPP---RFLSKVEKRNSDSVNRIYQRGAYLM-DPFYQE 79

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
              G    +    +            +               + +   +   + F +E  
Sbjct: 80  LQKGGGSQVLTLKELAPKGFYHTDYYLNFYRKTGWCDEAGLLLEITADRQLGIFFGNEDE 139

Query: 140 M-LANEVIIEAHGACYQVITDFLELFKKRSS-------------AARNLTERETSCLQLA 185
             L+ +         +++I    +L K+ S                  LT RE   ++L 
Sbjct: 140 PFLSEKSTQAPLKEAFEIIRSMAKLHKEISPNDVSSHYRLADMQTRFGLTPRECEIVELI 199

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +G  S +IA+ L +S+ TV  +  +   KLD  ++ + 
Sbjct: 200 LEGKGSPQIAQSLFISLGTVKNHRKNIYQKLDINSQAEL 238


>gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056]
 gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058]
 gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059]
 gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 319

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             LT+RE   +     G T+++IAE L LS  TVN +L     KL   NR  A+A
Sbjct: 255 PQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|145559614|gb|ABP73639.1| SalRII [Salinispora tropica]
          Length = 225

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            R+L+ RE   ++L   G ++ +IA +L +S  TV  +L +   KLD  +R+ A+ +   
Sbjct: 149 TRSLSGREFEVIELVAAGLSNAQIAGRLSISEGTVKRHLTNTYDKLDVRSRVAAVNRLAA 208

Query: 231 FGYI 234
            G I
Sbjct: 209 MGLI 212


>gi|326381413|ref|ZP_08203107.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326199660|gb|EGD56840.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 212

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 1/126 (0%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           +    +   G              +          +  +  A      V           
Sbjct: 87  VRALAVGADGFLLKDTPPAEIVAAIGRVRSGEPALSPSVTAA-LIKQVVDGRDATREPAG 145

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             A   LT+RE         G ++ EIA +L +SV TV A++     KLDA NR+Q   +
Sbjct: 146 CDAVDMLTDREREVAVCLARGASNAEIAAELYMSVATVKAHISHIFTKLDASNRVQVAIR 205

Query: 228 AIRFGY 233
               G 
Sbjct: 206 MHDAGL 211


>gi|297160587|gb|ADI10299.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 237

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++RE   L L   G  + EIAE LGLS  T   ++     KLDA +R Q +  A   G +
Sbjct: 170 SDRERQVLTLVARGLNNAEIAEALGLSPLTAKTHVSRIMGKLDARDRAQLVIAAYECGLV 229


>gi|260576451|ref|ZP_05844441.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sp. SW2]
 gi|259021334|gb|EEW24640.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sp. SW2]
          Length = 214

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +++         K ++   +L++RE   L+L  +G +++E+   L L   TV  Y+
Sbjct: 130 ALAGRILNAMRSGAAAKTANPIDDLSKREEDILRLVAEGKSNKEVGLVLDLQEKTVKHYM 189

Query: 210 GSATVKLDAVNRIQAIAKAIRF 231
            S   KL   NR++A   A   
Sbjct: 190 TSILQKLHVRNRVEAAVFAREH 211


>gi|149187161|ref|ZP_01865459.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148838697|gb|EDL55636.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 227

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           + +    +LA E+ +        V         K S     LT+RE   ++L GDG ++ 
Sbjct: 121 LVSGFERILAGELWMSRKLVYEYVNFYRRRQCSKTSPYYTKLTKREQQIIKLLGDGASNT 180

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           EIA+ L +S +TV A+L +A  K+   NR+QA+  
Sbjct: 181 EIADTLFVSENTVKAHLHNAFKKIKVKNRLQALLW 215


>gi|158318665|ref|YP_001511173.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114070|gb|ABW16267.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 244

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 32/69 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L        A   L +RE   LQL  DG T+ +I  +LGLS  TV  Y+ S   KL  
Sbjct: 169 ERLRDGPSEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGL 228

Query: 219 VNRIQAIAK 227
            +R QA   
Sbjct: 229 ASRTQAAVY 237


>gi|321157306|emb|CBW39288.1| Response regulator [Streptococcus pneumoniae]
          Length = 198

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L  +G T +++ +K+ +S  TV+ +L +   KL   NR +AI  A + 
Sbjct: 133 EVLTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIAEQL 192

Query: 232 GY 233
           GY
Sbjct: 193 GY 194


>gi|319794441|ref|YP_004156081.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596904|gb|ADU37970.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 504

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +++A  AC            ++    + L+ERE   L+    G  ++E+A  LG+S  TV
Sbjct: 416 VVDALLACAMSHAPSRSAAPQQQRGEQALSERELEVLRCISKGENTKEVARALGISPRTV 475

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++    +KL+   R  A  KA   G I
Sbjct: 476 RTHVERVFLKLECSTRAAATLKAATRGLI 504


>gi|307706263|ref|ZP_07643077.1| competence protein A [Streptococcus mitis SK321]
 gi|307618354|gb|EFN97507.1| competence protein A [Streptococcus mitis SK321]
          Length = 198

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L  +G T +++ +K+ +S  TV+ +L +   KL   NR +AI  A + 
Sbjct: 133 EVLTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIAEQL 192

Query: 232 GY 233
           GY
Sbjct: 193 GY 194


>gi|294054526|ref|YP_003548184.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613859|gb|ADE54014.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 210

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 8/150 (5%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVII 147
             +   E+  + + R+         +   V          +               E++I
Sbjct: 57  DYQMPGENGLKCTERILAEDPEAKVVLISVFDLEEDVWNAVQCGVVGYLTKKAGNAEILI 116

Query: 148 EAHGACYQ---VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           +A              +     R   A++LT+RE   L+L   G +++EI +++ L++  
Sbjct: 117 DAIREVAAGEEFFPAVIAKKLNRRKEAKDLTDRELKVLELLARGCSNKEIMDEMNLTLTM 176

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++     KL A++R QA+ KA   G +
Sbjct: 177 VKYHIVQTREKLGALDRTQAVVKAFERGIL 206


>gi|257865603|ref|ZP_05645256.1| LuxR family transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257871940|ref|ZP_05651593.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
 gi|257799537|gb|EEV28589.1| LuxR family transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257806104|gb|EEV34926.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
          Length = 205

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L +  +S    L+ RE    +L   G T++EIA +L LS  T+     +   KL   NR
Sbjct: 131 HLTRPETSLLEKLSPRECDIARLVAQGLTNKEIANQLFLSEGTIRNKTITIMEKLAVSNR 190

Query: 222 IQA 224
            Q 
Sbjct: 191 TQL 193


>gi|195940868|ref|ZP_03086250.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. EC4024]
          Length = 197

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT RE    +    G + +EIA +LGLS  TV+ +  +   KL+  N ++   
Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMSVKEIAVELGLSPKTVHVHRANLMEKLNVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|323160586|gb|EFZ46527.1| transcriptional regulator, LuxR family [Escherichia coli E128010]
          Length = 196

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 98  PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I+  L +S  TV A+L S   +L+  NR QA   
Sbjct: 158 ISRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191


>gi|313679321|ref|YP_004057060.1| LuxR family transcriptional regulator [Oceanithermus profundus DSM
           14977]
 gi|313152036|gb|ADR35887.1| two component transcriptional regulator, LuxR family [Oceanithermus
           profundus DSM 14977]
          Length = 213

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +        +K       LTERE S ++    G T ++IA  L LS  TV  Y   A  K
Sbjct: 132 LYAMIQHRQEKPEPTPEVLTERERSVVRGIAMGMTYKQIAADLELSEKTVATYRERAASK 191

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R      A+  G +
Sbjct: 192 LGLSSRAALTRWALEVGLL 210


>gi|326315054|ref|YP_004232726.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323371890|gb|ADX44159.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 308

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYT 190
             L     + A       + + + L   +++ A          LT RET  L     G T
Sbjct: 204 TALEPGQRLLARPLGASGLGETMLLLSVQAAGAEPAARLPRVDLTPRETEVLSWIAKGKT 263

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + +IA+ LG+S  TVN +L     KL    R  A A A
Sbjct: 264 NRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAALA 301


>gi|284029283|ref|YP_003379214.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808576|gb|ADB30415.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 215

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +++  F +    R++    LTERE   ++    G T+ EI E+L +S+ TV ++L SA 
Sbjct: 134 ARLLEHFTQAAAPRTARPHPLTEREADVVRAVARGRTNGEITEELVVSLSTVKSHLASAQ 193

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL   NR +    A     +
Sbjct: 194 RKLGLRNRTELAVWAWENRLV 214


>gi|170782105|ref|YP_001710438.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156674|emb|CAQ01832.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 228

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 14/108 (12%)

Query: 140 MLANEVIIEAHG--------ACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185
               E ++ A                   LE F           A  +LT RE     LA
Sbjct: 114 DADPEFLLAAIRTVHAGNSVIAASATRQLLEHFDPGSRPRVAPPAFASLTSREREIFVLA 173

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             G ++ EIA+   LS  TV  ++     KL   +R+Q +  A     
Sbjct: 174 ARGLSNAEIAQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAFEHRL 221


>gi|92112197|ref|YP_572125.1| LuxR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91795287|gb|ABE57426.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 275

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 65/237 (27%), Gaps = 23/237 (9%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFA-LYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           ++SL      L  ++       F     +      P R     +  +   ++        
Sbjct: 30  AASLDAPDFWLAAVRTIGAHLAFDTWVALIFHHHRPPRILAESDEDDGADEALFQDYQRG 89

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               D F           ++             +   R     +    + F   L   + 
Sbjct: 90  LYLLDPFYIDAKGRAREGLYTLADVAPQRFRHTEYYQRYFQRNIVADEVQFNCPLDAERT 149

Query: 130 GYVIF--TSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAAR------------ 172
             +    T  F   A  ++         ++   +      +  +                
Sbjct: 150 LCLSLGSTRAFDHAALGLLSLIQPWMLALMRQRMHFEFEGEDGTPPGPHPWHPRPGTPRE 209

Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                 LTERE    QL   G +++EIA +L +SV TV A+      KL   ++ + 
Sbjct: 210 LDSRYALTEREREVSQLMLGGSSTKEIARRLAISVETVRAHKKHLYAKLGINSQSEL 266


>gi|302549529|ref|ZP_07301871.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467147|gb|EFL30240.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 221

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                    + A  +LTERE   + L G G ++ EIA +L +S  T   ++    VKL+A
Sbjct: 140 AARSKEPAAADALASLTEREREVMALVGIGLSNGEIARRLVVSPLTAKTHVSRTMVKLNA 199

Query: 219 VNRIQAIAKAIRFGYI 234
            +R Q +  A   G +
Sbjct: 200 RDRAQLVVLAYESGLV 215


>gi|239932032|ref|ZP_04688985.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440400|ref|ZP_06579790.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343295|gb|EFE70251.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARN-----LTE 176
           L     G+++  ++   L   V + A      +      L     R+S A       LT 
Sbjct: 100 LRAGAAGFLLKRTDADTLVGAVRLVARSDTLLFPAAVRTLATEHARTSPAPPAWVARLTG 159

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE+  L+    G T+ EIA ++ +   TV  ++ S   K  A +R QA+  A   G++
Sbjct: 160 RESEVLRHVAAGLTNAEIARRMEVGPATVKTHVASVLAKTGARDRTQAVIAAYEAGFL 217


>gi|213850451|ref|ZP_03381349.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 181

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 83  PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 142

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 143 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 176


>gi|212709063|ref|ZP_03317191.1| hypothetical protein PROVALCAL_00095 [Providencia alcalifaciens DSM
           30120]
 gi|212687975|gb|EEB47503.1| hypothetical protein PROVALCAL_00095 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 14/206 (6%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL-FH 79
           L+ I + I       Y +N        Q     L+       +        + D     H
Sbjct: 19  LNTIAHIIPISAAVYYLVNEQW-----QPESHVLYGISTRMHEQYLSAFSQH-DPLHPDH 72

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
           F    L ++   +  E   +                      +R        +       
Sbjct: 73  FRGEDLRLV--KMPVEMRQQDKT-FFHDFMQPNHIADMAEIFIRRKNKIVAGISVLR-DT 128

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
               + ++  +          L  F  +  +  + T +E   + L  +G +++ IA  LG
Sbjct: 129 PFTPQEVVRLNAILPIA---ELMTFDVKPDSLVSYTPKEQEIIHLVREGASNKRIALLLG 185

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAI 225
           +S+ TV  +L +   K +  NR + +
Sbjct: 186 VSLSTVKTHLRNIFTKANVNNRTELV 211


>gi|297201229|ref|ZP_06918626.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197712908|gb|EDY56942.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L     +A  +LT+RET  L L   G +++E+AE+L ++  T+  ++    VKL   +R
Sbjct: 146 RLMAAAHTAYGDLTDRETEVLILIAQGLSNQEMAERLLVAESTIKTHVSRILVKLGLRDR 205

Query: 222 IQAIAKAIRFGYI 234
            QA   A     +
Sbjct: 206 TQAAVFAYEARLV 218


>gi|107101191|ref|ZP_01365109.1| hypothetical protein PaerPA_01002223 [Pseudomonas aeruginosa PACS2]
 gi|218892288|ref|YP_002441155.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234855|ref|ZP_04928178.1| hypothetical protein PACG_00729 [Pseudomonas aeruginosa C3719]
 gi|313110449|ref|ZP_07796334.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|126166786|gb|EAZ52297.1| hypothetical protein PACG_00729 [Pseudomonas aeruginosa C3719]
 gi|218772514|emb|CAW28296.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310882836|gb|EFQ41430.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 907

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183
                 +     +     +      G    +     +L     S   N  ++ RE   L+
Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ +IA+ + LS  T+  +L +   KL   +R QA+ K    G +
Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|327403986|ref|YP_004344824.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327319494|gb|AEA43986.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 224

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   +QL  +  T++EIA+KL ++  TV  +  +   K  A N    I  AI+ 
Sbjct: 154 ELLSERELEIIQLICEQKTAKEIADKLFINQRTVEGHKNNMFAKTGAKNIAGLIIYAIQN 213

Query: 232 GYI 234
             I
Sbjct: 214 NII 216


>gi|331651293|ref|ZP_08352318.1| transcriptional regulator UhpA [Escherichia coli M718]
 gi|331051034|gb|EGI23086.1| transcriptional regulator UhpA [Escherichia coli M718]
          Length = 209

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147
           I      E+   L  RL      F  I   +          +       L      E ++
Sbjct: 53  IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112

Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +A        H  C   I   L    + + A   LT RE     L   G + +EIA KL 
Sbjct: 113 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV+ +  +   KL+  + I+ +  A+    +
Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|256789144|ref|ZP_05527575.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 216

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+L   G ++ EIA +L +   TV +++ +   KL A +R QA+  A   G++
Sbjct: 154 TEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFV 213


>gi|228998002|ref|ZP_04157603.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229005552|ref|ZP_04163264.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228755739|gb|EEM05072.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228761735|gb|EEM10680.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
          Length = 96

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+ E   LQL   GY  +EIA  L  S  T++ ++     KLD  + ++A+ K I+ 
Sbjct: 27  EELTDSEKQILQLLCGGYKRKEIATMLYASERTISNHIQHIFDKLDVSSSLEAVTKGIQL 86

Query: 232 GYI 234
           GYI
Sbjct: 87  GYI 89


>gi|222096651|ref|YP_002530708.1| response regulator of salavaricin regulon [Bacillus cereus Q1]
 gi|221240709|gb|ACM13419.1| response regulator of salavaricin regulon [Bacillus cereus Q1]
          Length = 191

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ 
Sbjct: 120 PTETIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHIFDKLNVSSSLEAVT 179

Query: 227 KAIRFGYI 234
           K I+ GYI
Sbjct: 180 KGIKLGYI 187


>gi|295839362|ref|ZP_06826295.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197699050|gb|EDY45983.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 226

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-------RNLT 175
            LG       +  +     A E ++    A   +IT FL        AA         LT
Sbjct: 104 FLGKGAEPAELLGAIRTAAAGEALLSP-AATRSLITRFLAQAPGTGPAAGVDSARLAALT 162

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L     G +++EIAE+L +S  TV  ++  A  K+ A +R Q +  A   G +
Sbjct: 163 GREREVLVQVAAGLSNDEIAERLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 221


>gi|74318804|ref|YP_316544.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058299|gb|AAZ98739.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 210

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I   +   +  +SA   LT RE   +    +G +++ IA K+ LS +TV  +L +   KL
Sbjct: 131 IMQKMARGELNNSALSALTAREMEIVDHVKEGLSNKAIAYKMTLSENTVRNHLRNIMEKL 190

Query: 217 DAVNRIQAIAKAIR 230
              NR+Q    A++
Sbjct: 191 GLRNRVQVATLALK 204


>gi|86604925|ref|YP_473688.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553467|gb|ABC98425.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 198

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           + +      P+    +              ++    LP   +                  
Sbjct: 42  VEYCRRC--PVEVALLDVRMPDGDGILACQQIVELGLPVVVVMMTTFQEPGLIEAARRAG 99

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSE 192
               L+ E          +VI   L   ++    AR     LT RE   LQL  +G  ++
Sbjct: 100 AKGYLSKETDPA---ELARVIRQILSNPERDWLPARQELPKLTPRELCVLQLMKEGLANK 156

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +IA +LGLS+ TV  Y  +A  KLDA +R+ A+ KA + G +
Sbjct: 157 QIARRLGLSIETVKEYASAAYRKLDASDRVTALLKAQQLGIL 198


>gi|24213516|ref|NP_710997.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45658638|ref|YP_002724.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24194296|gb|AAN48015.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601882|gb|AAS71361.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 233

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 151 GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               ++I  F +  + ++   +N   LT+R+   L     G T  +IA++L +S HTV+ 
Sbjct: 140 RIADKIIRKFTKKEESKNQPIQNTLGLTKRKLQILNFIALGMTVSDIADELDISSHTVSR 199

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++     K++  ++ +AI +  R G I
Sbjct: 200 HIEKIYKKMEVHSKSEAIIRGRRMGII 226


>gi|21219768|ref|NP_625547.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289773037|ref|ZP_06532415.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|9368908|emb|CAB99140.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289703236|gb|EFD70665.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 220

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE   L+L   G ++ EIA +L +   TV +++ +   KL A +R QA+  A   G++
Sbjct: 158 TEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFV 217


>gi|119716860|ref|YP_923825.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119537521|gb|ABL82138.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 207

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 37/76 (48%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L  +  S    LT RET  L L  +G  +++IA +L +S  TV A+L SA  ++ 
Sbjct: 132 AARALLGVRAGSPQVQLTSRETEVLTLVREGLANKQIARRLDISERTVKAHLTSAFARIG 191

Query: 218 AVNRIQAIAKAIRFGY 233
             +R QA   A R G 
Sbjct: 192 VADRTQAALWAERNGL 207


>gi|126174023|ref|YP_001050172.1| response regulator receiver protein [Shewanella baltica OS155]
 gi|153000313|ref|YP_001365994.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|160874947|ref|YP_001554263.1| LuxR family transcriptional regulator [Shewanella baltica OS195]
 gi|217973656|ref|YP_002358407.1| LuxR family transcriptional regulator [Shewanella baltica OS223]
 gi|304411428|ref|ZP_07393042.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|307305250|ref|ZP_07584998.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
 gi|125997228|gb|ABN61303.1| transcriptional regulator, LuxR family [Shewanella baltica OS155]
 gi|151364931|gb|ABS07931.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|160860469|gb|ABX49003.1| transcriptional regulator, LuxR family [Shewanella baltica OS195]
 gi|217498791|gb|ACK46984.1| transcriptional regulator, LuxR family [Shewanella baltica OS223]
 gi|304350283|gb|EFM14687.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|306911553|gb|EFN41978.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
 gi|315267183|gb|ADT94036.1| transcriptional regulator, LuxR family [Shewanella baltica OS678]
          Length = 211

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
              Y+      + L    I+  H      + + +            LT RE   LQ    
Sbjct: 102 GVFYLDAGLTEISLGFSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLT 161

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           G T+ +IA +L +S  T+  +L     K+   +R QAIA A
Sbjct: 162 GSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|284007635|emb|CBA73286.1| type III secretion two-component response regulator [Arsenophonus
           nasoniae]
          Length = 214

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  + +IAE L + + TV  +  +   KLDA N    +  A R G+
Sbjct: 155 LTHREKQVLKLIFEGKRNRDIAEALVIGLKTVETHRMNIMRKLDAHNVADLMKWAHRMGF 214


>gi|262407478|ref|ZP_06084026.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|262354286|gb|EEZ03378.1| transcriptional regulator [Bacteroides sp. 2_1_22]
          Length = 219

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             C  V    L       +A+      LT+ E + L+    G T++EIA +  LS HT+N
Sbjct: 125 YICNHVSNLLLSGASSPLAASSVDDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTIN 184

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  +   KL   N  +A   A+R G +
Sbjct: 185 SHRKNIFRKLGVNNVHEATKYAMRAGIV 212


>gi|153824418|ref|ZP_01977085.1| transcriptional regulator UhpA [Vibrio cholerae MZO-2]
 gi|149741972|gb|EDM56001.1| transcriptional regulator UhpA [Vibrio cholerae MZO-2]
          Length = 208

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +    +    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALTQAE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + S+    +        V       C   + +        ++   +LT+RE     L 
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G   +EIA+ L LS  TV+ +  +   KL+  N +  I  A++   +
Sbjct: 157 VKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|150388326|ref|YP_001318375.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948188|gb|ABR46716.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 205

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + +S    LT RE   L   G G ++ EI ++L +S HTV  ++ +   KL+  +R Q
Sbjct: 135 DIRENSHLDELTPRERDVLTELGKGLSNFEIGKQLFISEHTVKKHVSNILSKLELNHRTQ 194

Query: 224 AIAK 227
           A   
Sbjct: 195 AALF 198


>gi|108803548|ref|YP_643485.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764791|gb|ABG03673.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 220

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ERE   L L   G ++ ++A +L L+  TV  +L +   KL+  +R +A+ KA
Sbjct: 147 PEGCELSERELEILLLVARGLSNRQVASELHLAEATVKRHLANVYAKLNVGSRGEAVRKA 206

Query: 229 IRFGY 233
           +  G+
Sbjct: 207 LSKGW 211


>gi|310659628|ref|YP_003937349.1| transcriptional regulator yhcz [Clostridium sticklandii DSM 519]
 gi|308826406|emb|CBH22444.1| putative transcriptional regulator YhcZ [Clostridium sticklandii]
          Length = 222

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             LT RE   + L   G ++ EIA+ L LS  TV  ++ +   K++  +R Q IA A
Sbjct: 155 DLLTRREYEIVGLISQGKSNLEIADDLFLSERTVKNHIHNILKKVNLQDRTQ-IAIA 210


>gi|307277198|ref|ZP_07558302.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
 gi|306506128|gb|EFM75294.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
          Length = 197

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 39/66 (59%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    L++RE   L+ A +G+  +EIAE+L +S  TVN +L S   KL+  + I AI +A
Sbjct: 127 STLDVLSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQA 186

Query: 229 IRFGYI 234
           I  G I
Sbjct: 187 IELGII 192


>gi|296130423|ref|YP_003637673.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022238|gb|ADG75474.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 223

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                   +  ++      LT+RE   L     G ++ +I ++L LS  TV  +      
Sbjct: 143 HAARADAGVAPRQVDTGPVLTKREIEVLVGMSHGRSNAQIGQELFLSEDTVKTHARRLFR 202

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A +R QA+A  +R G I
Sbjct: 203 KLGASDRAQAVAIGLRRGII 222


>gi|256617156|ref|ZP_05474002.1| salavaricin two-component system response regulator [Enterococcus
           faecalis ATCC 4200]
 gi|257087415|ref|ZP_05581776.1| salavaricin two-component system response regulator [Enterococcus
           faecalis D6]
 gi|312899812|ref|ZP_07759131.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|256596683|gb|EEU15859.1| salavaricin two-component system response regulator [Enterococcus
           faecalis ATCC 4200]
 gi|256995445|gb|EEU82747.1| salavaricin two-component system response regulator [Enterococcus
           faecalis D6]
 gi|295113419|emb|CBL32056.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterococcus sp. 7L76]
 gi|311293062|gb|EFQ71618.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|315025432|gb|EFT37364.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2137]
 gi|315166424|gb|EFU10441.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1341]
          Length = 197

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 39/66 (59%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    L++RE   L+ A +G+  +EIAE+L +S  TVN +L S   KL+  + I AI +A
Sbjct: 127 STLDVLSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQA 186

Query: 229 IRFGYI 234
           I  G I
Sbjct: 187 IELGII 192


>gi|90411062|ref|ZP_01219075.1| two-component response regulator of nitrate reduction
           [Photobacterium profundum 3TCK]
 gi|90327908|gb|EAS44229.1| two-component response regulator of nitrate reduction
           [Photobacterium profundum 3TCK]
          Length = 197

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 105 SVRLEGGLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             RL         I   +     +  G +   +   +L ++   E   A   V+     +
Sbjct: 64  VARLRRDFKSVKMICLTMHDEPEYAEGAIAAGANGYVLKHQAGEELVKAVDTVMNGGRYI 123

Query: 164 FKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                  +    LT R+ S LQL   G +++++AE+L +S  TV  +  +    L+    
Sbjct: 124 SNSIDMTSEKPTLTARQLSVLQLLVKGRSAKQVAEELFISSRTVEFHKYAMMRLLNVKTS 183

Query: 222 IQAIAKAIRFGYI 234
            + I  AI  G I
Sbjct: 184 AELIQYAINHGLI 196


>gi|298250029|ref|ZP_06973833.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297548033|gb|EFH81900.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 855

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTERETSCLQ 183
           Y+          +  +  A G    ++  F    + +     +       L++RE   L 
Sbjct: 745 YIAHLGTQSDQQSLTLAYAEGQNLPLVEAFTARHRGQPVPQDSPMAHSTDLSQRELEVLH 804

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L   G ++++IA +L +S  TV+A++ S   KL   +R      A+    
Sbjct: 805 LLSQGLSNKQIAAQLVISPRTVDAHVRSIYNKLALNSRAAVARYALEHHL 854


>gi|260220323|emb|CBA27745.1| hypothetical protein Csp_A03820 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 267

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 34/76 (44%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H A  QVI           + A  LTERE   L+    G T+ EI   L +S  TV  ++
Sbjct: 182 HQAPGQVIAPVTYTNGNLPTEADVLTEREAEILKWVALGKTNPEIGSILEISAFTVKNHM 241

Query: 210 GSATVKLDAVNRIQAI 225
                KLD  NR QA+
Sbjct: 242 QRVFKKLDVSNRAQAV 257


>gi|229174002|ref|ZP_04301538.1| Response regulator [Bacillus cereus MM3]
 gi|228609334|gb|EEK66620.1| Response regulator [Bacillus cereus MM3]
          Length = 566

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+   +G   + IA KL LS  T+  Y  +   KL   NR +AI KA    
Sbjct: 505 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNREEAIKKARTEN 564

Query: 233 YI 234
            +
Sbjct: 565 IL 566


>gi|154493926|ref|ZP_02033246.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC
           43184]
 gi|154086186|gb|EDN85231.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC
           43184]
          Length = 202

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  +   + L+ RE   +     G T+ EIA++L LS HTV  +  +   KL   +   
Sbjct: 125 EEGENEDQQTLSSREKEIVICVVKGMTNREIADRLYLSTHTVITHRRNIARKLQVHSASG 184

Query: 224 AIAKAIRFGYI 234
               AI    I
Sbjct: 185 LTVYAIVNKLI 195


>gi|157962375|ref|YP_001502409.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157847375|gb|ABV87874.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 219

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-------KRSSA 170
           +     + +  +G++  +S    LA    +EA       +   +EL +       + +S 
Sbjct: 94  LTISRAIHYGSSGFIPKSSSMETLA--EALEAVLFGDVWLPQGVELQEIDEDDTNQMASK 151

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA+  A++
Sbjct: 152 LADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV-IALQ 210

Query: 231 F 231
            
Sbjct: 211 Q 211


>gi|152988849|ref|YP_001348901.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964007|gb|ABR86032.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 907

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183
                 +     +     +      G    +     +L     S   N  ++ RE   L+
Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ +IA+ + LS  T+  +L +   KL   +R QA+ K    G +
Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|73538584|ref|YP_298951.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
 gi|72121921|gb|AAZ64107.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
          Length = 913

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           + +LT RE   LQ+   G  +  IAEKL LS  TV ++L     KL A NR +A+A    
Sbjct: 849 SDSLTARELEVLQMLSAGLRNRAIAEKLFLSELTVKSHLRKINAKLGAQNRTEAVAIGRS 908

Query: 231 FGYI 234
            G I
Sbjct: 909 RGLI 912


>gi|113970651|ref|YP_734444.1| LuxR family transcriptional regulator [Shewanella sp. MR-4]
 gi|114047880|ref|YP_738430.1| LuxR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113885335|gb|ABI39387.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4]
 gi|113889322|gb|ABI43373.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7]
          Length = 211

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
              Y+      + L    I+  H      + + +            LT RE   LQ    
Sbjct: 102 GVFYLDAGLTEISLGLSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLS 161

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           G T+ +IA +L +S  T+  +L     K+   +R QAIA A
Sbjct: 162 GSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|238793307|ref|ZP_04636933.1| hypothetical protein yinte0001_34000 [Yersinia intermedia ATCC
           29909]
 gi|238727276|gb|EEQ18804.1| hypothetical protein yinte0001_34000 [Yersinia intermedia ATCC
           29909]
          Length = 210

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L +   +    LT RE   L+L  +G  +  IA  L +S  TV  +  +   KLD     
Sbjct: 138 LAQGTDARQPVLTPRERQILKLITEGACNRIIAAHLSISQKTVETHRLNMMKKLDVHKVA 197

Query: 223 QAIAKAIRFGY 233
           + I  + R G 
Sbjct: 198 ELIHWSYRLGL 208


>gi|268592194|ref|ZP_06126415.1| transcriptional regulator, LuxR family [Providencia rettgeri DSM
           1131]
 gi|291312597|gb|EFE53050.1| transcriptional regulator, LuxR family [Providencia rettgeri DSM
           1131]
          Length = 247

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 18/219 (8%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            L  + + I   N  +Y+           + + ++   + DS +          D F   
Sbjct: 24  LLSWLSSLIAFDNAIVYSFEKGAP----PRFLSKVERRNSDSINRIYQRGAYLMDPFYQE 79

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
              G    +    +            +               + +  ++   + F +E  
Sbjct: 80  IQKGGASKVLTLKELAPKGFYHTDYYLNFYRKTGWCDEAGLLLDISTNRQLGIFFGNEDR 139

Query: 140 MLANEVIIEAHGA-CYQVITDFLELFKKRSSAARN-------------LTERETSCLQLA 185
              +E   +A     + +I   ++L K  S ++ +             LT RE   ++L 
Sbjct: 140 PFFSEKYTQAPLKDAFDIIRSMVKLHKDVSPSSVSNHYQNTDMQTRFGLTPRECEVVELI 199

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             G  S +IA+ L +S+ TV  +  +   KL   ++++ 
Sbjct: 200 LAGKGSPQIAQALFISLGTVKNHRKNIYQKLSINSQVEL 238


>gi|254240102|ref|ZP_04933424.1| hypothetical protein PA2G_00742 [Pseudomonas aeruginosa 2192]
 gi|126193480|gb|EAZ57543.1| hypothetical protein PA2G_00742 [Pseudomonas aeruginosa 2192]
          Length = 907

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183
                 +     +     +      G    +     +L     S   N  ++ RE   L+
Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ +IA+ + LS  T+  +L +   KL   +R QA+ K    G +
Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|116049710|ref|YP_791485.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584931|gb|ABJ10946.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 907

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183
                 +     +     +      G    +     +L     S   N  ++ RE   L+
Sbjct: 794 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 853

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ +IA+ + LS  T+  +L +   KL   +R QA+ K    G +
Sbjct: 854 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|331001433|ref|ZP_08325053.1| putative transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
 gi|329568315|gb|EGG50126.1| putative transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
          Length = 218

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 13/124 (10%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKR 167
           G          ++ G               +  + +  A     Q   +     +  +  
Sbjct: 98  GHGDVDMAVLALKHGAQDFML-------KPVDPQRLKGAVFQACQSDLLHFLRSQKEEAE 150

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             A  +L++RE    QL   G   ++IAE+LG S  TV  +      KL      +    
Sbjct: 151 REATSSLSQREREVAQLLAQGLLYKQIAERLGCSERTVKFHKARIAEKLGVKTSAE---I 207

Query: 228 AIRF 231
           A+R 
Sbjct: 208 ALRL 211


>gi|325918348|ref|ZP_08180482.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535427|gb|EGD07289.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 922

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 41/83 (49%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A+   +ERE   L     GY++++IA  L LS +TV  +L +
Sbjct: 826 RALTIQALLERLSGDEDPASDVFSERELEVLAQLARGYSNKQIARHLHLSQNTVKFHLKN 885

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 886 LYRKLDARSRESALAQALQRGVL 908


>gi|307328780|ref|ZP_07607951.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885588|gb|EFN16603.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 217

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 36/85 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 Q +             A  +T RE   L L G G +++EIA++L L V TV  +
Sbjct: 130 LDRIVAQAVHTRSASDAGPDIPAPAITPREREVLGLLGVGLSNKEIADRLHLGVTTVKTH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + S   K    NRI+    A+R G 
Sbjct: 190 VASLMTKTGRDNRIRLAVLAVRAGI 214


>gi|308070133|ref|YP_003871738.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305859412|gb|ADM71200.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa
           E681]
          Length = 216

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L++RE   L L   GY ++E+AEKL +SV TV A       KL+  +R + +  A+
Sbjct: 150 PYEILSKRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLRSRPELVQYAL 209

Query: 230 RFGYI 234
           +   +
Sbjct: 210 KKKML 214


>gi|288958203|ref|YP_003448544.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910511|dbj|BAI72000.1| two-component response regulator [Azospirillum sp. B510]
          Length = 254

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 17/159 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +  +   +       RL   L     +     L   +    +       L  ++  +A  
Sbjct: 80  LDLQNGGDEEADGMRRLRALLPETRMVILTSDLCTRRLANALEAGADGYLMKDLSSDALA 139

Query: 152 ACYQVITDFLELFKKRSSAA-----------------RNLTERETSCLQLAGDGYTSEEI 194
              +++    ++F    +A                  + L++RE   L+   +G +++ I
Sbjct: 140 QSLKLVMMGEKVFPTHLAALLISGRVNGNGTEMPVSRKGLSQREVQILRCLLNGDSNKMI 199

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A  L ++  TV  +L S   K++A NR QA   A+  G 
Sbjct: 200 ANHLNITEATVKVHLKSLLRKINASNRTQAAIWALNNGI 238


>gi|258647693|ref|ZP_05735162.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
 gi|260852526|gb|EEX72395.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
          Length = 315

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   +     G +++EIAE L +S +TV  +  +   KL           AI  
Sbjct: 246 EELSARERDVIISIVQGMSNKEIAEHLCISTNTVITHRRNIARKLQIHTPAGLTIYAIVN 305

Query: 232 GYI 234
           G +
Sbjct: 306 GLV 308


>gi|239989357|ref|ZP_04710021.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446370|ref|ZP_06585760.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349317|gb|EFE76221.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 229

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              G     +         R      LT RE   L   G G ++ EIA +L L   TV A
Sbjct: 139 RVAGRVIAGMRAHRAAHPHR--PLERLTGREREVLAGIGTGLSNAEIAGRLHLVEGTVKA 196

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   NR++A   A   G +
Sbjct: 197 HVSAVLAKLGVRNRVEAAIAAHEAGLL 223


>gi|261339343|ref|ZP_05967201.1| putative csgAB operon transcriptional regulatory protein
           [Enterobacter cancerogenus ATCC 35316]
 gi|288318141|gb|EFC57079.1| putative csgAB operon transcriptional regulatory protein
           [Enterobacter cancerogenus ATCC 35316]
          Length = 216

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|168749814|ref|ZP_02774836.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4113]
 gi|168756893|ref|ZP_02781900.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4401]
 gi|168768302|ref|ZP_02793309.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4486]
 gi|168776343|ref|ZP_02801350.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4196]
 gi|168783217|ref|ZP_02808224.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4076]
 gi|195938573|ref|ZP_03083955.1| putative transcription regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808046|ref|ZP_03250383.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4206]
 gi|208815487|ref|ZP_03256666.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4045]
 gi|208822917|ref|ZP_03263235.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4042]
 gi|209400645|ref|YP_002269004.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4115]
 gi|254791544|ref|YP_003076381.1| putative response regulator; hexosephosphate transport [Escherichia
           coli O157:H7 str. TW14359]
 gi|187768261|gb|EDU32105.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4196]
 gi|188015874|gb|EDU53996.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4113]
 gi|188999335|gb|EDU68321.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4076]
 gi|189356031|gb|EDU74450.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4401]
 gi|189362357|gb|EDU80776.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4486]
 gi|208727847|gb|EDZ77448.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4206]
 gi|208732135|gb|EDZ80823.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4045]
 gi|208737110|gb|EDZ84794.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4042]
 gi|209162045|gb|ACI39478.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4115]
 gi|254590944|gb|ACT70305.1| putative response regulator; hexosephosphate transport [Escherichia
           coli O157:H7 str. TW14359]
          Length = 209

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 17/157 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLANEV 145
           I      E+   L  RL      F  I   +             G   + ++      E 
Sbjct: 53  IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPIFVQSALDAGASGYLTKRCGP--EE 110

Query: 146 IIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
           +++A        H  C   I   L    + + A   LT RE    +L   G + +EIA K
Sbjct: 111 LVQAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFELLVKGDSVKEIAFK 169

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV+ +  +   KL+  + I+ +  A+    +
Sbjct: 170 LELSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|148652475|ref|YP_001279568.1| two component LuxR family transcriptional regulator [Psychrobacter
           sp. PRwf-1]
 gi|148571559|gb|ABQ93618.1| two component transcriptional regulator, LuxR family [Psychrobacter
           sp. PRwf-1]
          Length = 219

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEE 193
           E + L     +         +   L    +  +      NLT RE   +++   G++++ 
Sbjct: 119 EQVALDIRKALRGELVVSSRLAAVLAQALRTPNLDDIVSNLTSRELQVVKMIAKGHSNKM 178

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           I  +LG+S  TV  ++     K +   R+     A+
Sbjct: 179 IGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAV 214


>gi|4218542|emb|CAA09631.1| putative two-component response regulator [Streptomyces
           violaceoruber]
          Length = 202

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +         +    A ++ I   L L     SA   LTERE   L+L  +G  + EIA 
Sbjct: 105 DASPQDLAEAVRRIAAGHRAIDPQLALA-AWDSAESPLTEREMEVLRLTAEGDEAPEIAA 163

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LS  TV  YL S   KL+A NR+ A+  A   G++
Sbjct: 164 RLHLSTGTVRNYLTSVVTKLNARNRVDAVRIAHESGWL 201


>gi|312967916|ref|ZP_07782128.1| transcriptional regulatory protein uhpA [Escherichia coli 2362-75]
 gi|312287477|gb|EFR15385.1| transcriptional regulatory protein uhpA [Escherichia coli 2362-75]
          Length = 196

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK 166
           A I   V             G   F S+      E+I   H        +  D     K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDI--AIKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|303238514|ref|ZP_07325048.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593912|gb|EFL63626.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 215

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT RE   + L  DG  + +IA  L +S  TV   +     KL+  +RIQ    A++ 
Sbjct: 155 LTPREIEIINLVVDGKDNRDIANSLFISEGTVRNTISLILKKLNLRDRIQLAVYAVKN 212


>gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae
           SmR1]
 gi|300074066|gb|ADJ63465.1| LuxR family response regulator protein [Herbaspirillum seropedicae
           SmR1]
          Length = 217

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                   +       LT+RE   L    +G ++++IA +L LSV TV  +  +   KL+
Sbjct: 137 AALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLN 196

Query: 218 AVNRIQAIAKAIR 230
              + + I  A+ 
Sbjct: 197 IDGQAELIKFAVE 209


>gi|298251835|ref|ZP_06975638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546427|gb|EFH80295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1065

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 163  LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
            +  +  +   +LT RE   L L   G +++EIA+ L +S+ TV  ++G    KL A NR 
Sbjct: 994  MASREPALVVSLTRREQEVLCLLAAGASNQEIAQTLVISLDTVKKHVGRLLDKLGATNRT 1053

Query: 223  QAIAKAIRFGYI 234
            QAIA+A     +
Sbjct: 1054 QAIAQARARSLL 1065


>gi|239820081|ref|YP_002947266.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239804934|gb|ACS22000.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 206

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDFL-- 161
           + GG      I    R    +    I +              +++A     +  + +L  
Sbjct: 70  VAGGFRMPRVIVLTRRDKEGEVMRAIASGAHGYVRQDADPAELMDAIRHVARGGSLYLCK 129

Query: 162 --ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             +   +        T RE   L+    G  ++ IA +L +S +TV A++     KL   
Sbjct: 130 GTKALIRHGKPCVGFTAREEDVLRYLVKGDCNKGIARELDISANTVKAHVARICEKLHVG 189

Query: 220 NRIQAIAKAIRFGYI 234
           +R Q  AKA + G +
Sbjct: 190 SRAQVAAKATQRGLV 204


>gi|209883854|ref|YP_002287710.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
 gi|209872050|gb|ACI91846.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
          Length = 224

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIVAAK 211


>gi|149374681|ref|ZP_01892455.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
 gi|149361384|gb|EDM49834.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
          Length = 221

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           ++ +D  +  +K +    +LT ++   L +  +G  +++IA  L +S  T+ A++ +   
Sbjct: 137 RMHSDMTDFSEKLA----SLTPQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFR 192

Query: 215 KLDAVNRIQAIAKAIRF 231
           KL   NR QA+  AI+ 
Sbjct: 193 KLGVRNRTQAV-IAIQQ 208


>gi|111026189|ref|YP_708472.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|40787202|gb|AAR90120.1| response regulator [Rhodococcus sp. DK17]
 gi|110825032|gb|ABH00314.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 209

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L+ RE   L++   G T+ EIAE+L +S  TV ++  S   KL    R +    A   
Sbjct: 146 DSLSSRELDVLKMIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDA 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLL 208


>gi|88801325|ref|ZP_01116853.1| putative nitrate/nitrite DNA-binding response regulator
           [Polaribacter irgensii 23-P]
 gi|88781983|gb|EAR13160.1| putative nitrate/nitrite DNA-binding response regulator
           [Polaribacter irgensii 23-P]
          Length = 221

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LTERE + L+L     ++ EIAEK+ +S HTV +Y      KL+  N +     A+++
Sbjct: 159 DSLTEREKNVLRLVSKELSTSEIAEKMNISHHTVESYRKKLLRKLNVKNSVGLAIYAVKY 218

Query: 232 GYI 234
             +
Sbjct: 219 NLV 221


>gi|294646863|ref|ZP_06724484.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294808898|ref|ZP_06767627.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|292637808|gb|EFF56205.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443940|gb|EFG12678.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 233

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             C  V    L       +A+      LT+ E + L+    G T++EIA +  LS HT+N
Sbjct: 139 YICNHVSNLLLSGASSPLAASSVDDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTIN 198

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  +   KL   N  +A   A+R G +
Sbjct: 199 SHRKNIFRKLGVNNVHEATKYAMRAGIV 226


>gi|296136908|ref|YP_003644150.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|294341079|emb|CAZ89476.1| putative Nitrate/nitrite response regulator protein narL [Thiomonas
           sp. 3As]
 gi|295797030|gb|ADG31820.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 225

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE         G +++ IA +L ++  TV  ++ S   KLD  +R+Q    A   G
Sbjct: 163 PLSPRERQIAAAIARGASNKVIARELDIAETTVKVHVQSILRKLDLSSRVQIAVYASEHG 222

Query: 233 Y 233
            
Sbjct: 223 L 223


>gi|94309557|ref|YP_582767.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93353409|gb|ABF07498.1| Two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 231

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
              I++  G     +    E+    +  A  L+ RE   L L   G T+ EIAE L LS 
Sbjct: 140 ARRILDLAGK-MAPLAGGAEVQAGPTVGAPPLSAREIEILSLVSKGLTNREIAEVLSLSK 198

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  ++ ++  KL   +R QA+ +A   G +
Sbjct: 199 LTVECHIRNSYKKLAVHSRTQAVFEARASGLL 230


>gi|89902955|ref|YP_525426.1| ATP-dependent transcription regulator LuxR [Rhodoferax
           ferrireducens T118]
 gi|89347692|gb|ABD71895.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Rhodoferax ferrireducens T118]
          Length = 894

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 7/145 (4%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
           +  +      + +  +     +     I             ++    FL+ ++     A 
Sbjct: 754 ADDDRDGAFETLREVILTAQRIGVHRSIL----DAGGDLQALLP--RFLVSSHCNAELAI 807

Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                +  D  E  K  ++  A  LTERE   L L   G +++E+A  + +S  TV  +L
Sbjct: 808 SVRRLLAVDANEADKANKTGVAGTLTERERDVLMLVASGQSNKEVARSMNISAETVKTHL 867

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   KL    R QA+  A   G I
Sbjct: 868 KSIFGKLGVQQREQAVVLARAVGLI 892


>gi|116670683|ref|YP_831616.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116610792|gb|ABK03516.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 254

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 18/214 (8%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L +       +Q  ++   F +  + S+       + I  LH                  
Sbjct: 24  LDDHELVRRGLQELLEGEGFQV--VGSSGSAVEATRRIPALHPDVSVLDARLPDGTGIEV 81

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +   +  L  +I  S  +E  +   G +     G +L   G            G  +
Sbjct: 82  CRDVRSVDPNLNCLILTSFDDEQAL--RGAVLAGARGYVLKEIG------------GTDL 127

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
             +     A E + +  G    ++   +   ++       LT +E   L+L G G T+ +
Sbjct: 128 IGALRRAAAGESLFD-DGVAASIVESLVTP-QQVDPRIAGLTPQERRVLELVGGGLTNRQ 185

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           IA ++ L+  TV  Y+ S   KL    R QA   
Sbjct: 186 IAAEMFLAEKTVKNYVSSLLAKLGFERRTQAAVY 219


>gi|323934698|gb|EGB31088.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
          Length = 200

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|302391963|ref|YP_003827783.1| LuxR family transcriptional regulator [Acetohalobium arabaticum DSM
           5501]
 gi|302204040|gb|ADL12718.1| transcriptional regulator, LuxR family [Acetohalobium arabaticum
           DSM 5501]
          Length = 259

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 24/226 (10%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            L LI+  I   +   +  N       +   +        D  +        Y D     
Sbjct: 32  VLELIKALIAYDSSNFFVYNKLNSQFEKTTSVNVDSRVIDDYINY-----FQYIDGLKEK 86

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
             +   P     + + +      +           +      +       G + F  +  
Sbjct: 87  TFNQPHPSKSTQVMDYSK-WKKTEFFNDFLRVNGCYYLCGVDLHYNDQLLGTLSFYRDEH 145

Query: 140 MLAN-----------EVIIEAHGACYQVITDFLELFK-------KRSSAARNLTERETSC 181
                             +        V+    E+ +       +        + RE   
Sbjct: 146 SPDFNLKELLYLELLRPHLSNQLHKLIVLEKRSEIEEVDYSKLIEIEGLLYKFSNREIEV 205

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +L   G  +EEIA +L +S++TV  +L S   K+   +R Q  +K
Sbjct: 206 AKLVVSGLNNEEIAGELFISINTVKKHLYSIFRKIGVNSRAQLTSK 251


>gi|271966802|ref|YP_003340998.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509977|gb|ACZ88255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   L+L   G ++ EIA +L +S+ TV  ++G+   KL+A +R +A+  A
Sbjct: 145 PGIDRLTSREADVLRLMTRGLSNGEIAGELVISMETVKTHVGNVLAKLEARDRTRAVITA 204

Query: 229 IRFGYI 234
              G++
Sbjct: 205 YESGFV 210


>gi|297192036|ref|ZP_06909434.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719515|gb|EDY63423.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR      G +       ++A           +              +    LT R
Sbjct: 122 LLQAVRTVARGEGMIAPAVTRRLIAE----------FAAPGPVRSADAPDPAVLDTLTRR 171

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E   L   G+G ++ EIA +L ++  TV  ++     KL+  +R+QA   A   G 
Sbjct: 172 EREVLSCLGEGMSNAEIAARLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 227


>gi|170726233|ref|YP_001760259.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169811580|gb|ACA86164.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 210

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + +LT RE   LQ    G T+ +IA +L +S  T+  +L  A  K+   +R QAIA A
Sbjct: 144 SESLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 201


>gi|91213026|ref|YP_543012.1| transcriptional regulator YhjB [Escherichia coli UTI89]
 gi|117625803|ref|YP_859126.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli APEC O1]
 gi|218560595|ref|YP_002393508.1| DNA-binding response regulator in two-component regulatory system
           [Escherichia coli S88]
 gi|237703288|ref|ZP_04533769.1| transcriptional regulator YhjB [Escherichia sp. 3_2_53FAA]
 gi|306816128|ref|ZP_07450266.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli NC101]
 gi|91074600|gb|ABE09481.1| hypothetical transcriptional regulator YhjB [Escherichia coli
           UTI89]
 gi|115514927|gb|ABJ03002.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli APEC O1]
 gi|218367364|emb|CAR05143.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli S88]
 gi|226902552|gb|EEH88811.1| transcriptional regulator YhjB [Escherichia sp. 3_2_53FAA]
 gi|294489845|gb|ADE88601.1| transcriptional regulator, LuxR family [Escherichia coli IHE3034]
 gi|305850524|gb|EFM50981.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli NC101]
 gi|307628599|gb|ADN72903.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli UM146]
 gi|315286211|gb|EFU45647.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3]
 gi|323949761|gb|EGB45645.1| luxR family protein regulatory protein [Escherichia coli H252]
 gi|323954938|gb|EGB50718.1| luxR family protein regulatory protein [Escherichia coli H263]
          Length = 200

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            + T RE S LQL  +G  ++EIA +L  S+  V  Y+    +K    +R + +  A+  
Sbjct: 179 PSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALEN 238

Query: 232 GYI 234
             +
Sbjct: 239 NLV 241


>gi|22124427|ref|NP_667850.1| response regulator/transcription activator [Yersinia pestis KIM 10]
 gi|45440263|ref|NP_991802.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108810019|ref|YP_653935.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|108813574|ref|YP_649341.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|145600963|ref|YP_001165039.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|150260698|ref|ZP_01917426.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|162420249|ref|YP_001608242.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           Angola]
 gi|165926713|ref|ZP_02222545.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936411|ref|ZP_02224979.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010556|ref|ZP_02231454.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213920|ref|ZP_02239955.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167402479|ref|ZP_02307934.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167418702|ref|ZP_02310455.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426185|ref|ZP_02317938.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469425|ref|ZP_02334129.1| putative DNA-binding response regulator EsrB [Yersinia pestis FV-1]
 gi|218927460|ref|YP_002345335.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229836506|ref|ZP_04456672.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229840115|ref|ZP_04460274.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842196|ref|ZP_04462351.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904063|ref|ZP_04519176.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|270488948|ref|ZP_06206022.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294502330|ref|YP_003566392.1| putative two-component response regulator [Yersinia pestis Z176003]
 gi|21957213|gb|AAM84101.1|AE013653_1 response regulator/transcription activator [Yersinia pestis KIM 10]
 gi|45435119|gb|AAS60679.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777222|gb|ABG19741.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|108781932|gb|ABG15990.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|115346071|emb|CAL18939.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|145212659|gb|ABP42066.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|149290106|gb|EDM40183.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|162353064|gb|ABX87012.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           Angola]
 gi|165915527|gb|EDR34136.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921336|gb|EDR38560.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990646|gb|EDR42947.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204895|gb|EDR49375.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962696|gb|EDR58717.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048129|gb|EDR59537.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054896|gb|EDR64698.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229679833|gb|EEO75936.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|229690506|gb|EEO82560.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696481|gb|EEO86528.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706190|gb|EEO92198.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262360410|gb|ACY57131.1| putative two-component response regulator [Yersinia pestis D106004]
 gi|262364360|gb|ACY60917.1| putative two-component response regulator [Yersinia pestis D182038]
 gi|270337452|gb|EFA48229.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294352789|gb|ADE63130.1| putative two-component response regulator [Yersinia pestis Z176003]
 gi|320013881|gb|ADV97452.1| putative two-component response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 210

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L +   +    LT RE   L+L  +G  +  IA +L +S  TV  +  +   KLD     
Sbjct: 138 LTQGSDNTPPVLTPRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVA 197

Query: 223 QAIAKAIRFGY 233
           + I  + R G 
Sbjct: 198 ELIHWSYRLGL 208


>gi|329954342|ref|ZP_08295434.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328527610|gb|EGF54603.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 233

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 151 GACYQVITDFLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
             C  V    L    + ++    L     T  E S L+    G T++EIA +  LS HTV
Sbjct: 138 FICNHVSNLLLSGNNQPAAPHPALQDALLTPAERSILKEIALGKTTKEIAAERNLSFHTV 197

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           N++  +   KL   N  +A   A++ G +
Sbjct: 198 NSHRKNIFRKLSVNNAHEATKYAMKAGIV 226


>gi|256421426|ref|YP_003122079.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036334|gb|ACU59878.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 207

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   +T RE   LQL G G T+ +IA++L +S HTV ++  +   K    N    +  A 
Sbjct: 143 AIPRITRREKEILQLIGKGLTTMQIADQLFISTHTVESHRKNLMEKFGVNNTTSVVKLAS 202

Query: 230 RFGYI 234
            +  +
Sbjct: 203 EYKLL 207


>gi|147675562|ref|YP_001218191.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|146317445|gb|ABQ21984.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|227014589|gb|ACP10799.1| transcriptional regulator,LuxR family [Vibrio cholerae O395]
          Length = 209

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|262370175|ref|ZP_06063502.1| response regulator [Acinetobacter johnsonii SH046]
 gi|262315214|gb|EEY96254.1| response regulator [Acinetobacter johnsonii SH046]
          Length = 211

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   ++S    L+ERE     +  +  +++EI++KL +SV TVN Y      KL+  + +
Sbjct: 138 LSDTQTSPFDALSEREMQVAMMVVNCISAQEISDKLFVSVKTVNTYRYRIFEKLNIDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 198 KLTHLAIRYGLI 209


>gi|215488797|ref|YP_002331228.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218691804|ref|YP_002400016.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli ED1a]
 gi|312968158|ref|ZP_07782368.1| bacterial regulatory s, luxR family protein [Escherichia coli
           2362-75]
 gi|215266869|emb|CAS11310.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218429368|emb|CAR10185.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli ED1a]
 gi|312286983|gb|EFR14893.1| bacterial regulatory s, luxR family protein [Escherichia coli
           2362-75]
          Length = 200

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|15894734|ref|NP_348083.1| two-component system regulatory protein [Clostridium acetobutylicum
           ATCC 824]
 gi|15024399|gb|AAK79423.1|AE007657_3 Two-component system regulator (CheY domain and HTH-like
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325508872|gb|ADZ20508.1| Two-component system regulator (CheY domain and HTH-like
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 225

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E + ++  G G +++EIA+KL LS  TV  YL +   KL+  +R Q    A++ G I
Sbjct: 162 EWNIIKCVGFGLSNKEIAKKLRLSEGTVRNYLSNILNKLNFRDRTQLAIWAVQTGVI 218


>gi|86147901|ref|ZP_01066206.1| Response regulator [Vibrio sp. MED222]
 gi|85834328|gb|EAQ52481.1| Response regulator [Vibrio sp. MED222]
          Length = 209

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182
                G++  +S+   L + +    +G     + +          +     LT ++   L
Sbjct: 99  SHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVL 158

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +  DG  +++IA +L +S  T+ A++ +   KLD  NR QA+  
Sbjct: 159 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203


>gi|323528532|ref|YP_004230684.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323385534|gb|ADX57624.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 210

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 13/156 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       S   L  R+         +   +          +       +  +   +   
Sbjct: 53  LDMTMPGISGVDLIRRVRAERPSLPVLVLSIHNEAQVVSRALRAGATGYVTKDSNPDVLL 112

Query: 152 ACYQVITDFLELFKKR-------------SSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           A  + + +       +             +     L++RE   LQ+   G +  EIA+  
Sbjct: 113 AAIRKLAEGGRFIDPKLVEGIVFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIADAF 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  T++ +      KL   N    I  AIR G +
Sbjct: 173 ALSAKTISTHKMRLMQKLGLANNADLIRYAIRHGLV 208


>gi|239928878|ref|ZP_04685831.1| chitinase two-component response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437205|ref|ZP_06576595.1| response-regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291340100|gb|EFE67056.1| response-regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 213

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +         +   +   +LT RE   L   G+G ++  IA++L ++  TV  ++ 
Sbjct: 131 RLIAEFAAKPARRTEADPAVLESLTRREREVLSCLGEGLSNAGIADRLDMAEATVKTHVS 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               KL   +R+QA   A   G 
Sbjct: 191 RLLGKLGLRSRVQAAVLAQELGI 213


>gi|193782620|ref|NP_435754.2| Response regulator [Sinorhizobium meliloti 1021]
 gi|193073076|gb|AAK65166.2| Response regulator [Sinorhizobium meliloti 1021]
          Length = 204

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173
            G    G  +   +           +  A  + +   L+L + R                
Sbjct: 80  TGRGDIGITVRAMKAGAHDFLEKPASSAAVLEAVERALQLCETRRKEHDRAQALHTLLAS 139

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE+        G  +++IA +L  S  TV A+      KL   +  + ++ A R G 
Sbjct: 140 LTPRESQVSDQIVRGKRNKQIAFELNTSERTVKAHRHKVMEKLGVRSLAEVVSMAERLGL 199

Query: 234 I 234
           +
Sbjct: 200 L 200


>gi|124268678|ref|YP_001022682.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124261453|gb|ABM96447.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 226

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
              +     L+ RE     L   G +  EIAE+L LS +TV+ Y      K    N ++ 
Sbjct: 155 DDEAPLHERLSHREYQVFGLLAAGKSVGEIAEQLVLSSNTVSTYRARILEKTGVRNDVEL 214

Query: 225 IAKAIRFGY 233
              A+R   
Sbjct: 215 ALYAVRQEL 223


>gi|302530377|ref|ZP_07282719.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439272|gb|EFL11088.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 217

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 37/78 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             D     +       +L+ERE   + L G G ++ EI  +L LS  TV  Y+ +   K+
Sbjct: 138 HRDEQRAAQPARKLLASLSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVSAVLSKI 197

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A NR+QA   A R G +
Sbjct: 198 GAANRVQAALLAYRGGLL 215


>gi|256423166|ref|YP_003123819.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038074|gb|ACU61618.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 215

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLT RE   L    +G + + IA  L +S  TV +++     KL   +  +A+A AI   
Sbjct: 154 NLTAREKEVLTCIVNGQSYKMIASDLNISYETVRSHVKKIYEKLHVASLTEAVALAINQR 213

Query: 233 YI 234
            +
Sbjct: 214 IV 215


>gi|167623632|ref|YP_001673926.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167353654|gb|ABZ76267.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 219

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 9/116 (7%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-------KRSSA 170
           +     + +  +G++  +S    LA    +EA       +   +EL +       + +S 
Sbjct: 94  LTISRAIHYGSSGFIPKSSSMETLA--EALEAVLFGDIWLPQGVELQEINEDETNQMASK 151

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA+ 
Sbjct: 152 LADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|149280407|ref|ZP_01886527.1| DNA-binding response regulator, LuxR family protein [Pedobacter sp.
           BAL39]
 gi|149228821|gb|EDM34220.1| DNA-binding response regulator, LuxR family protein [Pedobacter sp.
           BAL39]
          Length = 211

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L ++       LT RE   L  A  G T+ ++AE L +S HTV ++  +   K    +  
Sbjct: 138 LKEEVLQNVPKLTRREKEILHEAARGLTTAQMAETLFISPHTVESHRKNLIEKFGVKSIA 197

Query: 223 QAIAKAIRFGYI 234
             I  A+ +G I
Sbjct: 198 SVIKLALEYGII 209


>gi|90413366|ref|ZP_01221359.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium profundum 3TCK]
 gi|90325608|gb|EAS42077.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium profundum 3TCK]
          Length = 211

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 SLTPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|27364647|ref|NP_760175.1| LuxR family transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|320155042|ref|YP_004187421.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|27360792|gb|AAO09702.1| Transcriptional regulator, LuxR family [Vibrio vulnificus CMCP6]
 gi|319930354|gb|ADV85218.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +     LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+
Sbjct: 142 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 201

Query: 226 AKAIRF 231
               + 
Sbjct: 202 ILLQQL 207


>gi|307326516|ref|ZP_07605711.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
            Tu 4113]
 gi|306887924|gb|EFN18915.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
            Tu 4113]
          Length = 1086

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%)

Query: 162  ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                   +    LT RE   L+L   G ++ +IAE+L +S  T + ++ +   KL    R
Sbjct: 1004 AAEPADPAEELGLTPRERDVLRLVAAGRSNRQIAEELFISPKTASVHVSNILAKLGVSGR 1063

Query: 222  IQAIAKAIRFGYI 234
             +A A A R   +
Sbjct: 1064 GEAAAVAHRLRLV 1076


>gi|283784837|ref|YP_003364702.1| CsgAB operon transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948291|emb|CBG87871.1| probable CsgAB operon transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 216

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|284992816|ref|YP_003411370.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066061|gb|ADB76999.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 253

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R  A  +L+ RE   L     G ++ +I  +L LS  T+  +      KL A +R +A+A
Sbjct: 185 REPAPVSLSMREMQVLTGMSQGKSNAQIGRELYLSEDTIKTHARRLFRKLGAKDRAEAVA 244

Query: 227 KAIRFGY 233
              R G 
Sbjct: 245 TGFRRGM 251


>gi|226951745|ref|ZP_03822209.1| response regulator [Acinetobacter sp. ATCC 27244]
 gi|294648987|ref|ZP_06726435.1| response regulator [Acinetobacter haemolyticus ATCC 19194]
 gi|226837535|gb|EEH69918.1| response regulator [Acinetobacter sp. ATCC 27244]
 gi|292825122|gb|EFF83877.1| response regulator [Acinetobacter haemolyticus ATCC 19194]
          Length = 227

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S    L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 154 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDV 213

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 214 KLTHLAIRYGLI 225


>gi|149914675|ref|ZP_01903205.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b]
 gi|149811468|gb|EDM71303.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b]
          Length = 224

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              L+ RE   L L  DG T+ +I+ +LGLS +TV  YL +   KLD  +R  AIAK
Sbjct: 162 TDTLSRREHEILALLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGAAIAK 218


>gi|153006507|ref|YP_001380832.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030080|gb|ABS27848.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
          Length = 541

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 157 ITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +     + ++ + A R  LT RE   L+L   G T++ IA +L LS  T++ ++ +   K
Sbjct: 463 LARLDAIRERSTPAGRSPLTPRELQVLRLVAAGRTNKAIAAELFLSERTIDRHISNIFRK 522

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L+  +R  A A A     +
Sbjct: 523 LNVPSRAAATAHAYDRKLL 541


>gi|4322356|gb|AAD16025.1| regulatory protein CsgD [Escherichia coli]
          Length = 83

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 23  LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 77


>gi|327313695|ref|YP_004329132.1| hemerythrin HHE cation binding domain-containing protein
           [Prevotella denticola F0289]
 gi|326944895|gb|AEA20780.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           F0289]
          Length = 318

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIA+ L +S +TV  +  +   KL   +       AI  
Sbjct: 249 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 NLV 311


>gi|326329878|ref|ZP_08196194.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325952315|gb|EGD44339.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 221

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           +G              V   ++   L    +        +V +       +       LT
Sbjct: 98  SGFLLKNADPDSLAEAVRAAADGHALLAPEVTM--RVIGRVTSHNAPTAPRPPKELDLLT 155

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L L G+G ++ EIA +L L+  TV  ++ +   KL   +R+Q +    R G +
Sbjct: 156 AREREVLLLIGEGLSNNEIARRLYLTEATVKTHVSACLAKLQLRDRVQTVVFIHRHGLL 214


>gi|325859996|ref|ZP_08173123.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|325482522|gb|EGC85528.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           CRIS 18C-A]
          Length = 336

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIA+ L +S +TV  +  +   KL   +       AI  
Sbjct: 267 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 326

Query: 232 GYI 234
             +
Sbjct: 327 NLV 329


>gi|325269082|ref|ZP_08135703.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324988703|gb|EGC20665.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 318

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIA+ L +S +TV  +  +   KL   +       AI  
Sbjct: 249 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 NLV 311


>gi|302345391|ref|YP_003813744.1| hemerythrin HHE cation binding domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149568|gb|ADK95830.1| hemerythrin HHE cation binding domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 318

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIA+ L +S +TV  +  +   KL   +       AI  
Sbjct: 249 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 NLV 311


>gi|295095310|emb|CBK84400.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 197

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT RE    +    G + +EIA +LGLS  TV+ +  +   KL+  N ++   
Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMSVKEIAVELGLSPKTVHVHRANLMEKLNVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|262374576|ref|ZP_06067850.1| nitrate/nitrite response regulator [Acinetobacter junii SH205]
 gi|262310572|gb|EEY91662.1| nitrate/nitrite response regulator [Acinetobacter junii SH205]
          Length = 219

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           NLT RE   +Q+  +G +++ IA KL ++  TV  ++     K     R++A   
Sbjct: 158 NLTSRELQVIQMISEGLSNKMIAHKLSITESTVKVHVKHILNKTGLRTRVEAAVW 212


>gi|227494727|ref|ZP_03925043.1| possible response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831727|gb|EEH64110.1| possible response regulator [Actinomyces coleocanis DSM 15436]
          Length = 221

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 17/146 (11%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI---IEAHGACYQVIT 158
           V      +    +A  V         VI           ++ E +   I   GA     +
Sbjct: 76  VAARCRNMQTKFLALSVSDSAEDVVAVIRAGARGYVTKTISTEELVQSILRVGAGDAAFS 135

Query: 159 DFLELF----------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
             L  F           +       L+ RE   ++L   GYT +E A +L +S+ TV  +
Sbjct: 136 PRLAGFVLDAFGTAQVSETDEELDLLSAREQEVMRLIARGYTYKETAAELFISIKTVETH 195

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL   NR +    A     +
Sbjct: 196 VSAVLRKLQLSNRNELTHWATVRNLV 221


>gi|298490188|ref|YP_003720365.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298232106|gb|ADI63242.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 227

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H    Q+    L           +LT RE   L+L   G ++ +I  +L LS  TV  Y+
Sbjct: 151 HALSTQIHAPKL---------LSSLTTREQEVLELLTHGLSNADIGNQLHLSPRTVEKYV 201

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   K    NR + +  A++ G +
Sbjct: 202 SSLLRKTLTSNRAELVRFAMKHGLV 226


>gi|188995237|ref|YP_001929489.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC
           33277]
 gi|188594917|dbj|BAG33892.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC
           33277]
          Length = 199

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +  +  +  + E      ++    LE  +      + LT RE   +     G T++EIAE
Sbjct: 96  DDTLSVHATVEELRQLLERLYQKTLEPEE-SGEEQQTLTNREKEIVVGVVKGMTNKEIAE 154

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LS HTV  +  +   KL   +       AI    +
Sbjct: 155 ELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKLV 192


>gi|302865580|ref|YP_003834217.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302568439|gb|ADL44641.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 220

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 32/84 (38%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+                LT RE   L   G G ++ EI + L LS  T   Y+ 
Sbjct: 132 AVTRRVLAAAARSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQALFLSPDTARTYVS 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+A +R Q +  A   G +
Sbjct: 192 RLLQKLNARDRAQLVVIAYESGLV 215


>gi|187933177|ref|YP_001885914.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B]
 gi|187721330|gb|ACD22551.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B]
          Length = 243

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +        LT RE   ++L   G T++EI  KL +S  TV  ++ +   KL   +R+
Sbjct: 171 FDEDLFFLENKLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRL 230

Query: 223 QAIAK 227
           + +  
Sbjct: 231 EVVIF 235


>gi|152969100|ref|YP_001334209.1| LuxR transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953949|gb|ABR75979.1| putative bacterial regulatory protein, LuxR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 182

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 1/132 (0%)

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155
            + + +                    +R        +      +  ++E    A      
Sbjct: 40  RLCDRNRHYYHEFMLPNNVRDMTEIFIRRERRIVAGISLMR-DVPFSSEERQRAQAVLPL 98

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           V     +  ++       LT +E   + +  +G +++ IA +L +S+ TV  +L +   K
Sbjct: 99  VELAIRDCLQEEDDLPAILTAKEREIVGMVREGASNKLIARQLDISLSTVKTHLRNIFAK 158

Query: 216 LDAVNRIQAIAK 227
            + VNR + +++
Sbjct: 159 TEVVNRTELVSR 170


>gi|145593585|ref|YP_001157882.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145302922|gb|ABP53504.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 225

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            R+L+ RE   ++L   G ++ +IA +L +S  TV  +L +   KLD  +R+ A+ +   
Sbjct: 149 TRSLSGREFEVIELVAAGLSNAQIAGRLSISEGTVKRHLTNTYDKLDVRSRVAAVNRLAA 208

Query: 231 FGYI 234
            G I
Sbjct: 209 MGLI 212


>gi|29899136|gb|AAP03103.1| putative 2-component system response regulator [Streptomyces
           griseochromogenes]
          Length = 222

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +++ +    ++      A+ L+ERET  ++    G T++E+A +L +S+ TV ++L 
Sbjct: 132 ITLRLLRNLAPAWRTTVPKPAQQLSERETQVIRAIARGRTNQEVAAELFISLSTVKSHLA 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   NR++  A A     
Sbjct: 192 TIQNKLQVRNRVEIAAWAWESRL 214


>gi|50954652|ref|YP_061940.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951134|gb|AAT88835.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 203

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 41/80 (51%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++       +  ++A   LT RE     L G G T+ EI  +L +++ TV ++L S  +
Sbjct: 122 RLLRHLSPRPEVTTAAGPQLTPRERETAALVGRGLTNAEICVELVIALGTVKSHLSSLQL 181

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   NR++  A A R G +
Sbjct: 182 KLGVRNRVEIAAWAWRNGLL 201


>gi|24374266|ref|NP_718309.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24348793|gb|AAN55753.1|AE015711_10 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1]
          Length = 211

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
              Y+      + L    I+  H      + + +            LT RE   LQ    
Sbjct: 102 GVFYLDAGLTEISLGLSNILRGHRVIPIQLVNGVNDDFGLYEDTEPLTIREREVLQALLS 161

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           G T+ +IA +L +S  T+  +L     K+   +R QAIA A
Sbjct: 162 GSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|117920952|ref|YP_870144.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117613284|gb|ABK48738.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3]
          Length = 211

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
              Y+      + L    I+  H      + + +            LT RE   LQ    
Sbjct: 102 GVFYLDAGLTEISLGLSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLS 161

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           G T+ +IA +L +S  T+  +L     K+   +R QAIA A
Sbjct: 162 GSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|320534244|ref|ZP_08034759.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133549|gb|EFW25982.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 232

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                    + +   L++RE   + L G   ++ EIA+ L L+  T+ ++L     KL+ 
Sbjct: 153 SVRRADAVHTESIDALSDREKEIVTLVGRAMSNTEIAQHLVLAESTIKSHLNRILHKLEL 212

Query: 219 VNRIQAIAKAIRFGYI 234
            +R Q I  A   G +
Sbjct: 213 RDRAQLIVLAYESGLV 228


>gi|312138951|ref|YP_004006287.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311888290|emb|CBH47602.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 214

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 5/147 (3%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       S   +  +L   +     +              +       L  ++      
Sbjct: 56  LDVRLPDGSGIDVCRQLRADMPDLRCLMITAFPDERAVREAVAAGAKGYLVKDIRGMQLV 115

Query: 152 ACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
              + +    E+    +   +      LT +E   L L G+G T+ +IA ++ L+  TV 
Sbjct: 116 QAVREVGAGHEIPFPVTPTRQPGAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVK 175

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            Y+     KL    R QA   A R G 
Sbjct: 176 NYVSRLLEKLGVERRAQAAVLAARSGL 202


>gi|298250271|ref|ZP_06974075.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297548275|gb|EFH82142.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1070

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 172  RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +LTERE   L+    G T+ +IAE+L +S  TV A+L S   K+   +R  A   A+  
Sbjct: 1008 DDLTEREVEVLRSLATGLTNAQIAEQLVISPRTVQAHLSSIYNKIGVSSRSAATRYALEH 1067

Query: 232  GY 233
              
Sbjct: 1068 HL 1069


>gi|293412951|ref|ZP_06655619.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468598|gb|EFF11091.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 200

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLRSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|282861134|ref|ZP_06270199.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563792|gb|EFB69329.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 215

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 11/112 (9%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR      G +                                    +    LT RE   
Sbjct: 115 VRTVAGGEGMIAPAVTRR-----------LIAEFAGATAARDGAPDPAVLDALTRREREV 163

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L   G G ++ EIA +L ++  TV  ++     KL+  +R+QA   A   G 
Sbjct: 164 LGCLGQGLSNAEIAGRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGL 215


>gi|215412247|ref|ZP_03421007.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           94_M4241A]
 gi|298525962|ref|ZP_07013371.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495756|gb|EFI31050.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
          Length = 183

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 95  AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 154

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL   +R+Q   +A R G
Sbjct: 155 YTKLGLSSRLQLAQQAARRG 174


>gi|254428002|ref|ZP_05041709.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196194171|gb|EDX89130.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 216

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             + +   L      S    +LT ++   + +  +G  ++ IA +L +S  TV A++ + 
Sbjct: 130 ARRAMPPTLPDHSAMSERITSLTPQQFRVMGMLMEGMQNKVIAYELDVSEATVKAHMTAI 189

Query: 213 TVKLDAVNRIQAI 225
             KL   NR QA+
Sbjct: 190 FRKLGVRNRTQAV 202


>gi|297158191|gb|ADI07903.1| two-component system DNA-binding response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 243

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ A   + E       ++    L+ F    +         LT
Sbjct: 125 IRGGARGYVTKTITGTDLVDAIFRVSEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 184

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +EIA++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 185 QREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 243


>gi|291446355|ref|ZP_06585745.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349302|gb|EFE76206.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +     LT+RE   L L G G ++ EIA +L LS  TV  ++ S   KL  VNR+Q
Sbjct: 151 DSGAADRTGALTDREGQVLALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQ 210

Query: 224 AIAKAIRFGYI 234
           A   A R G I
Sbjct: 211 AAVLADRAGLI 221


>gi|256390270|ref|YP_003111834.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356496|gb|ACU69993.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 205

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 2/109 (1%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSC 181
                        +   +    I         +     E  +  K      +LT+RE   
Sbjct: 96  GAAGSALIRRNAPDEASIDEREIALMELLAQYLSPRLREYFVRSKEVRDGSSLTDREAQV 155

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           ++L   G ++  IA +L + V TV  ++ SA  K  A NR Q     +R
Sbjct: 156 VRLVAQGMSNRLIAAELHIRVDTVKKHVMSAMQKTGAGNRTQLALIHLR 204


>gi|227544258|ref|ZP_03974307.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300910231|ref|ZP_07127691.1| transcriptional regulator [Lactobacillus reuteri SD2112]
 gi|227185771|gb|EEI65842.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300892879|gb|EFK86239.1| transcriptional regulator [Lactobacillus reuteri SD2112]
          Length = 223

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L   GYT++EIA K+ +S  TV A+      KL+  +  + +  A++  
Sbjct: 160 ALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHQ 219

Query: 233 YI 234
            +
Sbjct: 220 LV 221


>gi|198275756|ref|ZP_03208287.1| hypothetical protein BACPLE_01931 [Bacteroides plebeius DSM 17135]
 gi|198271385|gb|EDY95655.1| hypothetical protein BACPLE_01931 [Bacteroides plebeius DSM 17135]
          Length = 262

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A+ L++RE   L+L   G  S+EIA +L +SVHTV+ +      KL   + I+A   A  
Sbjct: 199 AQILSDREKQILRLIDKGLMSKEIASQLSISVHTVSRHRQEILGKLQVKSSIEACRVAKE 258

Query: 231 FGYI 234
            G +
Sbjct: 259 LGIL 262


>gi|153007753|ref|YP_001368968.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559641|gb|ABS13139.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 214

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   +  R LT ++T  L +  +G  +++IA +LG+S  TV A++ +   KL   +R QA
Sbjct: 140 EALIARLRTLTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQA 199

Query: 225 IAKAIRFG 232
           +    R G
Sbjct: 200 VILLSRIG 207


>gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 242

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +   + F       + +       +++   +   ++  +  N T RE S LQL  +G  
Sbjct: 138 LLTEAARFANADVGQMAKQITEIKSMLSHGDKHHSRKDDSIPNFTPREASVLQLVAEGLM 197

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++EIA +L  S+  V  Y+    +K    +R + +  A+    +
Sbjct: 198 NKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|77745297|gb|ABB02549.1| response regulator [Lactobacillus reuteri]
          Length = 217

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L   GYT++EIA K+ +S  TV A+      KL+  +  + +  A++  
Sbjct: 154 ALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHQ 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|300088572|ref|YP_003759094.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528305|gb|ADJ26773.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 220

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   L L   G  + EIAE L +   TV  ++     KL   +R +AI+  +R
Sbjct: 156 AEPLTAREIEILTLIAAGKGNREIAETLFIEEKTVKNHINVIYSKLRIKSRYEAISYMLR 215

Query: 231 F 231
            
Sbjct: 216 Q 216


>gi|312114265|ref|YP_004011861.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219394|gb|ADP70762.1| two component transcriptional regulator, LuxR family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 219

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                +   L+   + ++A  +L+ERE   L+ A  G++++ IA  L +SV +V  Y   
Sbjct: 134 IAAHAVDRTLDSPSENATAGADLSEREVEVLRFASVGHSNKAIANILTISVRSVETYKAR 193

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
           A  KL   NR+  +  AI  G++
Sbjct: 194 AMDKLGLDNRVGLVGYAIEKGWL 216


>gi|26990552|ref|NP_745977.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985531|gb|AAN69441.1|AE016579_12 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
          Length = 265

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 26/228 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             +  +   I   ++ +  +  +   P+                      +    D F  
Sbjct: 33  ALVRQLDRYIPVDSWVV--LIFSSGRPQVLAECPGKDGGPDPLFQDYLKGLYLL-DPFYL 89

Query: 79  HFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                    + W                 R     +        V+L   +   +   SE
Sbjct: 90  ANREAPQSGLFW-LADVAPECFEQTDYYQRYFRLNVVADEAHINVQLDTERTLSLSLGSE 148

Query: 138 --FLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR---------------NLTE 176
             F      ++         ++   +       ++ +S A                 L+ 
Sbjct: 149 CLFNAEQTALLTLIQSWVAALMRQRMAFEREALEQNTSPAPSWQSWLDSTDQQLDTPLSA 208

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           RE    +L   G +++EIA KL +S  TV  +      KL   ++ + 
Sbjct: 209 RELEVGRLMLSGCSNKEIARKLAISAETVKVHRKHMYSKLGIKSQSEL 256


>gi|298247256|ref|ZP_06971061.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297549915|gb|EFH83781.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1002

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query: 166  KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
               S  R L+ERE   LQL   G ++++IA+ L ++V T+  ++     KLD  NRIQ +
Sbjct: 934  DLPSRPRGLSEREYEILQLVARGMSNQDIADTLIVAVSTIKVHVRHLCQKLDVQNRIQMV 993

Query: 226  AKAIRFGYI 234
            A+A   G +
Sbjct: 994  ARAREKGIV 1002


>gi|164511465|emb|CAN89666.1| putative LuxR family regulator [Streptomyces collinus]
          Length = 109

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 32/72 (44%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                   +A  L+ RE   L     G T   IA ++GLS HTV+ Y+     K   VNR
Sbjct: 34  SAMSATDPSALTLSPREQEVLAHLAQGCTYRIIARRMGLSPHTVDTYVRRLRGKTGLVNR 93

Query: 222 IQAIAKAIRFGY 233
           IQ    A + GY
Sbjct: 94  IQLAHLAFQLGY 105


>gi|307331390|ref|ZP_07610509.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306882949|gb|EFN14016.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 201

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
              I A     +VI   L L        + LT RE   L+ A  G  S +IA KL LSV 
Sbjct: 112 SDAIRAVAQGERVIDPQLALAALDDGP-QPLTPRELEVLRFAAKGEESAQIAAKLFLSVG 170

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  YL SA  KLDA NR+ AI  A   G++
Sbjct: 171 TVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201


>gi|297571832|ref|YP_003697606.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932179|gb|ADH92987.1| two component transcriptional regulator, LuxR family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 222

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 19/151 (12%)

Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-------------------MLA 142
            +++ R+    +    +A  V    +    VI                            
Sbjct: 71  AEVARRVLAAGVSTRFLALSVSDAANDVVAVIRAGARGYVTKAVNVDELVEAIKRVAGGD 130

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                   G              +R      L+ERE   ++L   GYT  E A +L +S+
Sbjct: 131 AAFSPRLAGFVLDAFGSQTTDIAERDEELDRLSEREQEVMRLIARGYTYRETATELFISI 190

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            TV  ++ +   KL   NR +    A   G 
Sbjct: 191 KTVETHVSAVLRKLQLSNRHELSRWAALRGI 221


>gi|295395258|ref|ZP_06805465.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971893|gb|EFG47761.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 226

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   L L   G T++EI ++L L++ T+  ++G+   K  A +R+Q +  A+R
Sbjct: 160 ADELTPRERDILALIARGRTNQEICDELWLTMPTIKTHIGNLRAKTQARDRVQLVLFALR 219

Query: 231 FGY 233
            G 
Sbjct: 220 VGI 222


>gi|297198108|ref|ZP_06915505.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714199|gb|EDY58233.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G ++ EIA +L +   TV +++     KL A +R QA+  A   G
Sbjct: 157 QLTEREAEVLRLMTRGLSNAEIAARLVVGTETVKSHVSGVLAKLGARDRTQAVIAAYESG 216

Query: 233 YI 234
           ++
Sbjct: 217 FV 218


>gi|77463692|ref|YP_353196.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462525|ref|YP_001043639.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|77388110|gb|ABA79295.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126104189|gb|ABN76867.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 219

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 27/209 (12%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L ++      I        F    +      P  +     L+ +     ++         
Sbjct: 22  LSDMKEAFLQIAQA----GF-YVALRLGFYSPEDE-----LNTFPEQFVELYTARGLALQ 71

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHKNGY 131
           D  +    +    + W ++ +   +    +             G    +  R    K  +
Sbjct: 72  DPLMRWTFTNHGALRWSAVDQPDPLGVIARY-----RQYGMRYGATICLAGRGPVPKKSF 126

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            IF       ++  I++       +  +            ++LTE +   L++   G   
Sbjct: 127 GIFARADREFSDAEIVDLRELLTTLHVN----------EPQSLTESQVEVLRMLSTGMRY 176

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +++A  LG+S   V A L  A  +++A  
Sbjct: 177 KQMAYALGISESAVKARLKGAAQRMNAKT 205


>gi|326796056|ref|YP_004313876.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326546820|gb|ADZ92040.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 213

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    L+ERE    Q+  D   S EIA++L +S  TV+ Y      KL+  + ++    A
Sbjct: 145 SPLHALSERELQVAQMIVDCKKSNEIADQLNVSPKTVSTYRARIFSKLNIESDVELARLA 204

Query: 229 IRFGYI 234
           +R+  +
Sbjct: 205 MRYNIL 210


>gi|320201302|gb|EFW75883.1| Transcriptional regulatory protein UhpA [Escherichia coli EC4100B]
          Length = 85

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 20  ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 79

Query: 227 K 227
           +
Sbjct: 80  R 80


>gi|311106078|ref|YP_003978931.1| response regulator 7 [Achromobacter xylosoxidans A8]
 gi|310760767|gb|ADP16216.1| response regulator 7 [Achromobacter xylosoxidans A8]
          Length = 215

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQ 155
           +L+  L       A +   +          +       L  +         I+A  A   
Sbjct: 76  ELTALLHERYPQIAVLVLSMHDNPEYMVQAVKAGARGYLLKDEPAQEIVTAIDAVMAGRS 135

Query: 156 VITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             +  + +   + ++ A  LT+RE   L+    G  +++IA+ LGLSV TV  +  +   
Sbjct: 136 YFSAAVAVRLSQATAPATMLTQRERDVLRHIASGEANKQIAQALGLSVRTVETHRLNIKR 195

Query: 215 KLDAVNRIQAIAKAIRF 231
           KL    + + I  A+  
Sbjct: 196 KLGIDGQAELIKYAVEN 212


>gi|302542220|ref|ZP_07294562.1| nitrate/nitrite response regulator protein NarL [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459838|gb|EFL22931.1| nitrate/nitrite response regulator protein NarL [Streptomyces
           himastatinicus ATCC 53653]
          Length = 258

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LT 175
           VR G           + ++ A   +          + + L +    S AA        LT
Sbjct: 138 VRAGARGYLLKGAGRDEILRALHTVARGGAVFSPRMAERLGVLLGASGAASAKEAFPTLT 197

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE   L L   G    +IA++L ++  TV  ++GS   KL   +R QAI +A   G 
Sbjct: 198 AREREVLDLLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVHDRAQAIVRAREAGL 255


>gi|298483763|ref|ZP_07001936.1| transcriptional regulator [Bacteroides sp. D22]
 gi|295087553|emb|CBK69076.1| transcriptional regulator [Bacteroides xylanisolvens XB1A]
 gi|298270057|gb|EFI11645.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 233

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             C  V    L       +A+      LT+ E + L+    G T++EIA +  LS HT+N
Sbjct: 139 YICNHVSNLLLSGASSPLAASSVDDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTIN 198

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  +   KL   N  +A   A+R G +
Sbjct: 199 SHRKNIFRKLGVNNVHEATKYAMRAGIV 226


>gi|289168290|ref|YP_003446559.1| response regulator [Streptococcus mitis B6]
 gi|288907857|emb|CBJ22697.1| response regulator [Streptococcus mitis B6]
          Length = 198

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L  +G T +++ +K+ +S  TV+ +L +   KL   NR +AI  A + 
Sbjct: 133 EMLTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIAEQL 192

Query: 232 GY 233
           GY
Sbjct: 193 GY 194


>gi|171910618|ref|ZP_02926088.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 213

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +  A         +      +       LT RE   L     G   +EIA++LG+S  TV
Sbjct: 128 VPIARKVVSHFHNESRR-DVRDRPEFSGLTPREFEILTQLAKGLQYKEIADQLGISTSTV 186

Query: 206 NAYLGSATVKLDAVNRIQAIAK 227
             +L     KL    R +A+ K
Sbjct: 187 RGHLHVIYGKLHVQTRTEAVIK 208


>gi|118592081|ref|ZP_01549475.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118435377|gb|EAV42024.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 257

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 59/219 (26%), Gaps = 23/219 (10%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83
           + + ++A  FA +                   N D  +          + D     F   
Sbjct: 37  LLDLLEADYFASFVWTRTEGDTDA-----VFLNMDERNLAAY-QHHFQHCDPITPRFRMC 90

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EF 138
                   I          +             G+ F         G +          F
Sbjct: 91  RRATHLDQIISREDFLR-TEFYNDFLARDGLHQGMNFHAYAATGHLGDLRIWRGAGKDTF 149

Query: 139 LMLANEVIIEAHGACYQVITDFL-----------ELFKKRSSAARNLTERETSCLQLAGD 187
                +++     A  Q + +              L     +A   LT RE   L L  +
Sbjct: 150 QQRDLDILNAIGTAFGQALANMRTNEQKQREADPRLRLAAWAARHQLTGREQDVLCLVSE 209

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           G    EIA  L +SV TV ++L +   K    +R + +A
Sbjct: 210 GKRDREIALDLNISVTTVRSHLKAVFQKSGVTSRAELLA 248


>gi|154509662|ref|ZP_02045304.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799296|gb|EDN81716.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC
           17982]
          Length = 216

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A  L +S+ TV  ++ S   KL   NR +    A++ 
Sbjct: 154 DLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHVSSVLRKLQLSNRNELTRWAMQR 213

Query: 232 GYI 234
             +
Sbjct: 214 HIV 216


>gi|89056006|ref|YP_511457.1| two component LuxR family transcriptional regulator [Jannaschia sp.
           CCS1]
 gi|88865555|gb|ABD56432.1| two component transcriptional regulator, LuxR family [Jannaschia
           sp. CCS1]
          Length = 214

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 94  EETVIESSGQLSVRLE--GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-H 150
           +     +    +V           A +   +R G             +    + ++    
Sbjct: 66  DAVRAAAQADWTVDALVISIFGDEARVIEAIRAGAKGYVLKGGDLSHIGEDIQSVLAGGS 125

Query: 151 GACYQVITDFLEL--FKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                +    L +    + + A   A  LT RET  L+    GY   EIA +LG+S  TV
Sbjct: 126 PISPSIARHLLAVLNDPRDAPAMQDAPALTNRETEILRSVSRGYKRHEIAAQLGISAGTV 185

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++ S   KL+  + I+A+A A R G +
Sbjct: 186 GNHITSIYRKLEVSSNIEAVAIASRSGML 214


>gi|34498054|ref|NP_902269.1| LuxR family two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|34103909|gb|AAQ60269.1| probable two-component response regulator, LuxR family
           [Chromobacterium violaceum ATCC 12472]
          Length = 217

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G  + +IAE L +++ TV  +  +   KLDA N ++    AIR G
Sbjct: 156 RLTMRENQVLKLIAEGMRNRDIAESLKITIKTVETHRLNLMRKLDAHNAVELTNWAIRLG 215

Query: 233 Y 233
            
Sbjct: 216 I 216


>gi|77462285|ref|YP_351789.1| LuxR family protein [Rhodobacter sphaeroides 2.4.1]
 gi|77386703|gb|ABA77888.1| Possible LuxR family protein [Rhodobacter sphaeroides 2.4.1]
          Length = 203

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 56/214 (26%), Gaps = 21/214 (9%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           +  ++    A  F    +         Q       +Y  D  +          D  +   
Sbjct: 11  ISQLRRMATAGYFLGLHVRFTSPLITMQ-------SYREDWIEYYTEKGYVIYDPTIRWA 63

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
            S      W  + E+                     G+               F      
Sbjct: 64  LSETGHRRWSDLAEQDSRG-----VFAAAAQFDLRFGVTCS-WGTRESRSLGSFARSDRE 117

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
             +  +         + + F  L +        LT+ +   L+    G      A KLG+
Sbjct: 118 FTDREV-------ELIFSLFQRLHELTQPPQE-LTQPQIEALRCIAGGDRHAAAAMKLGI 169

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S   + A + SA  +L A    +AI +A  +  I
Sbjct: 170 SESALKARIASARQRLGARTTAEAIQRAKEYRLI 203


>gi|293189077|ref|ZP_06607804.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           odontolyticus F0309]
 gi|292821991|gb|EFF80923.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           odontolyticus F0309]
          Length = 216

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A  L +S+ TV  ++ S   KL   NR +    A++ 
Sbjct: 154 DLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHVSSVLRKLQLSNRNELTRWAMQR 213

Query: 232 GYI 234
             +
Sbjct: 214 HIV 216


>gi|221369141|ref|YP_002520237.1| Two-component response regulator [Rhodobacter sphaeroides KD131]
 gi|221162193|gb|ACM03164.1| Two-component response regulator [Rhodobacter sphaeroides KD131]
          Length = 220

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 152 ACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +V+T       +  ++    LT RE   L+L  +G +++E+A  L L   TV  Y+ 
Sbjct: 136 LAAKVLTRLKSPRAQGAAAPIDQLTAREEDILRLVAEGCSNKEVALALDLQEKTVKHYMT 195

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           +   KL   NR +A   A R 
Sbjct: 196 AILQKLQVRNRTEAALMAQRH 216


>gi|156744240|ref|YP_001434369.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii
            DSM 13941]
 gi|156235568|gb|ABU60351.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Roseiflexus castenholzii DSM 13941]
          Length = 1021

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 170  AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            A   LT RE   L+L   G T +EIA  L ++V TV +++     K++A NR QA A+A 
Sbjct: 956  ANEPLTAREIQVLRLLATGRTDQEIATSLVIAVSTVRSHIKRIYAKINARNRTQAAARAH 1015

Query: 230  RFGYI 234
              G I
Sbjct: 1016 DLGII 1020


>gi|50083538|ref|YP_045048.1| response regulator [Acinetobacter sp. ADP1]
 gi|49529514|emb|CAG67226.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Acinetobacter sp. ADP1]
          Length = 211

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S    L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 138 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLSIDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 198 KLTHLAIRYGLI 209


>gi|332296786|ref|YP_004438708.1| two component transcriptional regulator, LuxR family [Treponema
           brennaborense DSM 12168]
 gi|332179889|gb|AEE15577.1| two component transcriptional regulator, LuxR family [Treponema
           brennaborense DSM 12168]
          Length = 225

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
            T         +   + LT RE     L   GY++E+IAEKL L++ TV   + +   K 
Sbjct: 146 FTPASRPDPDDAPWLKELTNREREIATLLVTGYSNEQIAEKLHLAIQTVRNQVSAIYFKT 205

Query: 217 DAVNRIQAIAKAIRF 231
              +R + I  A R 
Sbjct: 206 GVKDRFEMIRLANRN 220


>gi|304406485|ref|ZP_07388141.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344543|gb|EFM10381.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 7/121 (5%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           +EG     +GI                T          ++       ++      +    
Sbjct: 95  VEGLAGGASGILL------KDFTANKLTGALREAMRGELLLPASIAAKLAMRLRSVTSPT 148

Query: 168 SSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            + A   LT RE     L      + EIAE L ++  TV  Y+     K+   +R + IA
Sbjct: 149 FAGADFALTPREIEIATLLIAYKNNREIAEALFITEGTVKNYISVIYEKVGMNDRAKVIA 208

Query: 227 K 227
           +
Sbjct: 209 R 209


>gi|262401983|ref|ZP_06078548.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262351955|gb|EEZ01086.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 209

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|114769185|ref|ZP_01446811.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550102|gb|EAU52983.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
          Length = 205

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + RE   L+    G +++EIA  L +   TV  ++ +   KL   NR QA   A   
Sbjct: 146 SAREMQTLEQLCIGLSNKEIARNLDIQEVTVKLHVKNIFSKLGVSNRTQAALFAKER 202


>gi|331698102|ref|YP_004334341.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952791|gb|AEA26488.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 522

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
                            +    +  +A  A        +    +R +    LT RE   L
Sbjct: 405 HRPATDPDAAATGLRDDVRRGALDADAVEAVLSAAGHRVR---RRRAWPAGLTTREVEVL 461

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +L   G ++ +IA +L LS  TV A++     K  A NR  A   A+R G 
Sbjct: 462 RLLARGLSNRDIAGRLVLSPKTVGAHVEHIYAKTGANNRATAGLFAMRHGL 512


>gi|317499014|ref|ZP_07957295.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893664|gb|EFV15865.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 222

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +TE E   ++L G G +++EI+ +L LS  TV  YL +   KLD  +R Q     ++ 
Sbjct: 155 EEITEAEWEIIKLVGRGLSNKEISAELSLSEGTVRNYLSTILNKLDLRDRTQLAIWEVQS 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|311111869|ref|YP_003983091.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943363|gb|ADP39657.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 210

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L    +G+++  +    LA    I    A   V+   L   +  +     LTERET  L+
Sbjct: 103 LAAGASGFMVKDTSASQLAEG--IRRVHAGMHVVDPALA-AESLAYGESPLTERETEILR 159

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +AG G T+  I E+L LS  TV  +L SA  KL+A NR +AI  A   G++
Sbjct: 160 VAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGWL 210


>gi|284042019|ref|YP_003392359.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946240|gb|ADB48984.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           +++  F+     R+  +    LT RE   L     G ++ EIA  L L   TV  ++G  
Sbjct: 132 RLLEQFVSAAPARAGDATLAELTPRERDVLLGIAAGRSNAEIAALLQLEESTVKGHVGRM 191

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R+QA+  A   G +
Sbjct: 192 LAKLGLHSRVQAVIYAYETGLV 213


>gi|54310461|ref|YP_131481.1| LuxR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46914904|emb|CAG21679.1| putative transcriptional regulator, LuxR family [Photobacterium
           profundum SS9]
          Length = 268

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   +R QA+  
Sbjct: 206 SLTPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKSRTQAVIL 260


>gi|84684966|ref|ZP_01012866.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667301|gb|EAQ13771.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 253

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 58/209 (27%), Gaps = 9/209 (4%)

Query: 28  IKARNFALYTINSALDFPRRQQL-ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86
                        A      + +    L N++                            
Sbjct: 4   FGFDRLIYGYTRFATPNSVGELIDALFLTNHNPTYFRQFIEERMFLHAPLTRWARENESG 63

Query: 87  -IIWQSIQEET-VIESSGQLSVRLEGGLLPFAGIAFPV---RLGFHKNGYVIFTSEFLML 141
              W ++      +       +     +   AG    V       H    +         
Sbjct: 64  YCSWGALWTRPEDLTEKELEVIAFNRAMNVTAGYTVAVPTASDRSHALFALTGAHGLTQQ 123

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKL 198
             + I   +G    V+ + + L             L++R+   L+   +G +++++A  +
Sbjct: 124 DLDEIWAENGKEIDVLCNIVHLKIASLPIETNRPKLSKRQLEVLEWVSEGKSNQDVATIM 183

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +SV T+  +L  A  KL      QAIAK
Sbjct: 184 DVSVPTIEKHLRLAREKLGVDTTAQAIAK 212


>gi|323189334|gb|EFZ74617.1| transcriptional regulator, LuxR family protein [Escherichia coli
           RN587/1]
          Length = 196

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 98  PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 157

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 158 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 191


>gi|325104954|ref|YP_004274608.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM
           12145]
 gi|324973802|gb|ADY52786.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM
           12145]
          Length = 235

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   + L  DG +S EIA+ L +S +TV  +  +   KL   +    +  A
Sbjct: 168 PNFAKLTKREKEIISLLSDGKSSPEIADMLFISANTVITHRKNIVKKLGMKSFAHLVRFA 227

Query: 229 IRFGYI 234
           I F  +
Sbjct: 228 IAFDLV 233


>gi|289662128|ref|ZP_06483709.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 923

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 40/83 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA  L LS +T+  +L +
Sbjct: 827 RALTIQAVLERLSGDDDPACDIFSERELEVLAQLARGYSNKQIARCLHLSENTIKFHLKN 886

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA +R  A+A+A++ G +
Sbjct: 887 LYRKLDARSRENALAQALQRGLL 909


>gi|254703683|ref|ZP_05165511.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 3 str. 686]
 gi|261754322|ref|ZP_05998031.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261744075|gb|EEY32001.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 213

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   +  R LT ++T  L +  +G  +++IA +LG+S  TV A++ +   KL   +R QA
Sbjct: 140 ESLIARLRILTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 199

Query: 225 IAKAIRFG 232
           +    R G
Sbjct: 200 VILLSRIG 207


>gi|148977193|ref|ZP_01813820.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145963475|gb|EDK28738.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 209

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182
                G++  +S+   L + +    +G     + +          +     LT ++   L
Sbjct: 99  SHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKIATLTPQQYKVL 158

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +  DG  +++IA +L +S  T+ A++ +   KLD  NR QA+  
Sbjct: 159 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203


>gi|194431335|ref|ZP_03063628.1| transcriptional regulatory protein UhpA [Shigella dysenteriae 1012]
 gi|194420790|gb|EDX36866.1| transcriptional regulatory protein UhpA [Shigella dysenteriae 1012]
 gi|320180011|gb|EFW54953.1| Transcriptional regulatory protein UhpA [Shigella boydii ATCC 9905]
 gi|332084474|gb|EGI89669.1| transcriptional regulatory protein uhpA [Shigella dysenteriae
           155-74]
 gi|332084858|gb|EGI90041.1| transcriptional regulatory protein uhpA [Shigella boydii 5216-82]
          Length = 196

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL-ELFK 165
           A I   V             G   F S+      E+I   H        +  D   +L  
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATGGCYLTPDIAIKLAS 132

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R      LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++  
Sbjct: 133 GRQGP---LTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELA 189

Query: 226 AK 227
            +
Sbjct: 190 RR 191


>gi|326330415|ref|ZP_08196723.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951690|gb|EGD43722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 362

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 16/110 (14%)

Query: 139 LMLANEVIIEAHGACYQVITDF------------LELFKKRSSAARN----LTERETSCL 182
           L      I  A     Q + D               L   R  AAR     LT RE    
Sbjct: 246 LDEQRRQISAALARAGQAVGDLCDAPLILASEATATLPPPRQPAARGAMSGLTAREQDVF 305

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L   G T+ EIA++L +S  TV +++     KL   NR +AIAK +R G
Sbjct: 306 ALLVSGATNPEIADRLTVSETTVKSHVKHILRKLRVSNRAEAIAKYVRGG 355


>gi|325697781|gb|EGD39665.1| two component system response regulator [Streptococcus sanguinis
           SK160]
 gi|332358540|gb|EGJ36364.1| two component system response regulator [Streptococcus sanguinis
           SK1056]
          Length = 227

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +++  E   +Q  G G +++EIA KL LS  TV  YL     KL+  +R Q    A++ 
Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|325860330|ref|ZP_08173452.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
 gi|325482209|gb|EGC85220.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
          Length = 214

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 34/84 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             C       L            LT+ E   L+    G T+ EIAEK   S HTVN +  
Sbjct: 124 FLCQHAADLLLAPAASLDRDVVKLTKTEAEILKEIALGLTTREIAEKRFSSFHTVNTHRK 183

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N  +A+  A+R G +
Sbjct: 184 NIFRKLGVNNVHEAMRYAMRSGLV 207


>gi|307708433|ref|ZP_07644899.1| SalR [Streptococcus mitis NCTC 12261]
 gi|307615532|gb|EFN94739.1| SalR [Streptococcus mitis NCTC 12261]
          Length = 198

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L  +G T +++ +K+ +S  TV+ +L +   KL   NR +AI  A + 
Sbjct: 133 EVLTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIAEQL 192

Query: 232 GY 233
           GY
Sbjct: 193 GY 194


>gi|298241134|ref|ZP_06964941.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554188|gb|EFH88052.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +  S A  LTERE   L     G++++ I ++L L+  TV  +      KL A NR QA+
Sbjct: 144 RSGSIAEMLTERERMILTYMAQGFSNKMIGQELHLAERTVKFHTTILFQKLQASNRAQAV 203

Query: 226 AKAIRFGYI 234
           AKA++   I
Sbjct: 204 AKALQERLI 212


>gi|271968827|ref|YP_003343023.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512002|gb|ACZ90280.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 214

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180
           L    +G+++  S    L   +     G       V    +  +    +    +T RE  
Sbjct: 95  LRAGVSGFLLKVSPPEQLFAAIRTAVSGLATLDPAVTARVMAGYVGAPAIPGTVTPRERE 154

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L G G T+ EI   L ++  TV  ++     KL   +R +A+  A   G +
Sbjct: 155 VLTLIGRGLTNREITAALSVTESTVGTHINRLLAKLHLRDRAEAVRYAYEHGLV 208


>gi|229015004|ref|ZP_04172081.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
 gi|228746271|gb|EEL96197.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
          Length = 188

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E   L L     T+ EI+  L +S  TV  ++ S   KL   +R+ A+ K I+ 
Sbjct: 123 EALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVVKGIKK 182

Query: 232 GYI 234
           G I
Sbjct: 183 GLI 185


>gi|229021072|ref|ZP_04177731.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
 gi|229024513|ref|ZP_04180960.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228736801|gb|EEL87349.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228740232|gb|EEL90571.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
          Length = 188

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E   L L     T+ EI+  L +S  TV  ++ S   KL   +R+ A+ K I+ 
Sbjct: 123 EALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVVKGIKK 182

Query: 232 GYI 234
           G I
Sbjct: 183 GLI 185


>gi|300778185|ref|ZP_07088043.1| LuxR family two component transcriptional regulator
           [Chryseobacterium gleum ATCC 35910]
 gi|300503695|gb|EFK34835.1| LuxR family two component transcriptional regulator
           [Chryseobacterium gleum ATCC 35910]
          Length = 209

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L  A  G T+ ++AEKL +S HTV ++  +   K    N   AI  AI +
Sbjct: 145 PKLTRREKEILAEAAKGLTTNQMAEKLFISPHTVESHRKNLIEKFQTSNLSSAIRLAIEY 204

Query: 232 GYI 234
           G I
Sbjct: 205 GLI 207


>gi|157150357|ref|YP_001451161.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075151|gb|ABV09834.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 227

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +++  E   +Q  G G +++EIA KL LS  TV  YL     KL+  +R Q    A++ 
Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|125717095|ref|YP_001034228.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|262283716|ref|ZP_06061480.1| two-component response transcriptional regulator [Streptococcus sp.
           2_1_36FAA]
 gi|323353591|ref|ZP_08088124.1| two component system response regulator [Streptococcus sanguinis
           VMC66]
 gi|125497012|gb|ABN43678.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           sanguinis SK36]
 gi|262260562|gb|EEY79264.1| two-component response transcriptional regulator [Streptococcus sp.
           2_1_36FAA]
 gi|322121537|gb|EFX93300.1| two component system response regulator [Streptococcus sanguinis
           VMC66]
 gi|324990443|gb|EGC22381.1| two component system response regulator [Streptococcus sanguinis
           SK353]
 gi|324992278|gb|EGC24200.1| two component system response regulator [Streptococcus sanguinis
           SK405]
 gi|324994360|gb|EGC26274.1| two component system response regulator [Streptococcus sanguinis
           SK678]
 gi|325688533|gb|EGD30550.1| two component system response regulator [Streptococcus sanguinis
           SK72]
 gi|325689555|gb|EGD31560.1| two component system response regulator [Streptococcus sanguinis
           SK115]
 gi|325693874|gb|EGD35793.1| two component system response regulator [Streptococcus sanguinis
           SK150]
 gi|327459586|gb|EGF05932.1| two component system response regulator [Streptococcus sanguinis
           SK1]
 gi|327466995|gb|EGF12509.1| two component system response regulator [Streptococcus sanguinis
           SK330]
 gi|327473049|gb|EGF18476.1| two component system response regulator [Streptococcus sanguinis
           SK408]
 gi|327490831|gb|EGF22612.1| two component system response regulator [Streptococcus sanguinis
           SK1058]
 gi|328945374|gb|EGG39527.1| two component system response regulator [Streptococcus sanguinis
           SK1087]
 gi|332358394|gb|EGJ36219.1| two component system response regulator [Streptococcus sanguinis
           SK49]
 gi|332364228|gb|EGJ42003.1| two component system response regulator [Streptococcus sanguinis
           SK1059]
 gi|332364532|gb|EGJ42303.1| two component system response regulator [Streptococcus sanguinis
           SK355]
          Length = 227

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +++  E   +Q  G G +++EIA KL LS  TV  YL     KL+  +R Q    A++ 
Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|42523606|ref|NP_968986.1| two-component response regulator [Bdellovibrio bacteriovorus HD100]
 gi|39575812|emb|CAE79979.1| two-component response regulator [Bdellovibrio bacteriovorus HD100]
          Length = 204

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 151 GACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               +    FL    + +   +    LT+RE    ++   G +++EIAE LG S  T+  
Sbjct: 118 LLALKRGERFLSANIREAIDKAGVEVLTKREIEVARMIATGRSNKEIAEVLGCSDQTIKT 177

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  +   KL     ++      + G 
Sbjct: 178 HKTNIMTKLGVNTSVEVAMWVTKQGL 203


>gi|307610791|emb|CBX00405.1| hypothetical protein LPW_21241 [Legionella pneumophila 130b]
          Length = 267

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE  CL L   G T ++I+E L LS  TVN +  S   K+  VN  +A++KA 
Sbjct: 202 PLAQLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAF 261

Query: 230 RFGYI 234
           R G +
Sbjct: 262 RLGLL 266


>gi|284991540|ref|YP_003410094.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064785|gb|ADB75723.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 215

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 12/146 (8%)

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY-VIFTSEFLML----ANEVIIEAHGA 152
               G   +R+         +      G        +       L      E I++A   
Sbjct: 58  PGRDGVTVIRVLRERGHRTPVLVLTSFGEPDLVVPALVAGADGYLLKYQDGESILDAVRC 117

Query: 153 CYQ-------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                     ++T  +    +       LT+RE   L+L   G  ++ IA +L +S  TV
Sbjct: 118 IAAGGAPVDPMVTAAVLADLRDRGQGDLLTDREKEVLELVRQGLPNKVIARRLRISEATV 177

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             ++     ++ A +R QA   A R 
Sbjct: 178 KTHVTRILQRIGATDRTQAALWAERR 203


>gi|54298259|ref|YP_124628.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris]
 gi|53752044|emb|CAH13470.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris]
          Length = 267

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE  CL L   G T ++I+E L LS  TVN +  S   K+  VN  +A++KA 
Sbjct: 202 PLAQLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAF 261

Query: 230 RFGYI 234
           R G +
Sbjct: 262 RLGLL 266


>gi|330468305|ref|YP_004406048.1| NarL family two-component response regulator [Verrucosispora maris
           AB-18-032]
 gi|328811276|gb|AEB45448.1| NarL family two-component response regulator [Verrucosispora maris
           AB-18-032]
          Length = 219

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   L     G  +  IA +L LS  TV  +L +  VK+   +R QAI +A 
Sbjct: 153 PFPQLTDREREILDHVAQGLDNATIAHRLALSPKTVRNHLSNILVKIGVGDRAQAIVRAR 212

Query: 230 RFGY 233
             G 
Sbjct: 213 EQGL 216


>gi|313204085|ref|YP_004042742.1| transcriptional regulator, luxr family [Paludibacter
           propionicigenes WB4]
 gi|312443401|gb|ADQ79757.1| transcriptional regulator, LuxR family [Paludibacter
           propionicigenes WB4]
          Length = 220

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 40/82 (48%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             Q+I D     K+ S     LT  E   +QL   G T++EIA+   LS HT+N +  + 
Sbjct: 132 ALQIIMDGHNRKKESSGKRDLLTHTELELIQLFTQGKTAKEIADSRCLSHHTINTHRKNI 191

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL+  N  + I  A++ G +
Sbjct: 192 FRKLEINNVQELIKFALKNGLV 213


>gi|312886495|ref|ZP_07746104.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311301123|gb|EFQ78183.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 263

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L    +G +S++IA+KL +S +T+  +  +   K +A N  + +  A+R   I
Sbjct: 204 TKREKGVLVYIAEGLSSKQIADKLNISENTIVNHKQNMLRKTNAKNVTELVVMAVRNRVI 263


>gi|292491541|ref|YP_003526980.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291580136|gb|ADE14593.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 202

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 5/132 (3%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT---- 158
           Q  +   G  LP   I     +            +F+                +      
Sbjct: 67  QELLPQRGIHLPVIMITGHADVPMAVQAMKSGAEDFIEKPFRAQALLDRIHKALSEGNHQ 126

Query: 159 -DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
             F +  ++  +   +LT+RE    +L  +G  ++ IA +L +S+ TV A+      KL 
Sbjct: 127 GQFQDPQREFLTQLESLTKRERQVFELLAEGKMNKHIAAELSISIRTVEAHRAKVMEKLK 186

Query: 218 AVNRIQAIAKAI 229
           A +    I  AI
Sbjct: 187 AKSLADLIRLAI 198


>gi|260769447|ref|ZP_05878380.1| two component transcriptional regulator LuxR family [Vibrio
           furnissii CIP 102972]
 gi|260614785|gb|EEX39971.1| two component transcriptional regulator LuxR family [Vibrio
           furnissii CIP 102972]
          Length = 159

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERET 179
           + +G             ++ A+  I+  H              L  + S   + L++RE 
Sbjct: 45  LHMGASGFVSKSEDITNIIDASRAILSGHSYFPVASFHHQNAALSGQESEMLKLLSDREM 104

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LQ    G T++EIA+K+ LS  T++ Y      KL + + ++ I  A R G +
Sbjct: 105 MVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGVV 159


>gi|269926246|ref|YP_003322869.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789906|gb|ACZ42047.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 214

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                 ++   + + + I E      +   +      K       LT+RE   LQ   +G
Sbjct: 111 QAIRCISAGGSIHSPQEIAELLLLAGRARIEDANARDKIG----QLTDREREILQAIAEG 166

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + +EIA +  ++V T + +  +   KLD  +R+QA+  A+R G I
Sbjct: 167 LSDKEIAARFNITVDTAHKHANNILRKLDTNSRLQAVLFALRHGAI 212


>gi|223934727|ref|ZP_03626647.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896682|gb|EEF63123.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 210

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              L       A NL+ RE   L+L   G+  +EI +KL +   TV  Y+ +   K+   
Sbjct: 137 HFHLIGSSPREAENLSPREQEVLELLALGFIYKEIGDKLNIGTETVRTYVKNICQKMHVR 196

Query: 220 NRIQAIAK 227
           +R++A+AK
Sbjct: 197 SRLEAVAK 204


>gi|15804064|ref|NP_290100.1| putative regulator [Escherichia coli O157:H7 EDL933]
 gi|15833654|ref|NP_312427.1| regulator [Escherichia coli O157:H7 str. Sakai]
 gi|168746942|ref|ZP_02771964.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168753332|ref|ZP_02778339.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168759603|ref|ZP_02784610.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168765927|ref|ZP_02790934.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168772526|ref|ZP_02797533.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168779663|ref|ZP_02804670.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168785385|ref|ZP_02810392.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC869]
 gi|168797350|ref|ZP_02822357.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|195935048|ref|ZP_03080430.1| putative regulator [Escherichia coli O157:H7 str. EC4024]
 gi|208808308|ref|ZP_03250645.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208814475|ref|ZP_03255804.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208820374|ref|ZP_03260694.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209396704|ref|YP_002272999.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217326332|ref|ZP_03442416.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254795473|ref|YP_003080310.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli O157:H7 str. TW14359]
 gi|261224835|ref|ZP_05939116.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254268|ref|ZP_05946801.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12518232|gb|AAG58661.1|AE005577_6 putative regulator [Escherichia coli O157:H7 str. EDL933]
 gi|13363874|dbj|BAB37823.1| putative regulator [Escherichia coli O157:H7 str. Sakai]
 gi|187771689|gb|EDU35533.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188018429|gb|EDU56551.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189002306|gb|EDU71292.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189359150|gb|EDU77569.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189364558|gb|EDU82977.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189369942|gb|EDU88358.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189374520|gb|EDU92936.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC869]
 gi|189379929|gb|EDU98345.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|208728109|gb|EDZ77710.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208735752|gb|EDZ84439.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208740497|gb|EDZ88179.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209158104|gb|ACI35537.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209755520|gb|ACI76072.1| putative regulator [Escherichia coli]
 gi|209755522|gb|ACI76073.1| putative regulator [Escherichia coli]
 gi|209755526|gb|ACI76075.1| putative regulator [Escherichia coli]
 gi|217322553|gb|EEC30977.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254594873|gb|ACT74234.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O157:H7 str.
           TW14359]
 gi|320191433|gb|EFW66083.1| Putative regulator [Escherichia coli O157:H7 str. EC1212]
 gi|326337482|gb|EGD61317.1| Putative regulator [Escherichia coli O157:H7 str. 1044]
 gi|326340008|gb|EGD63815.1| Putative regulator [Escherichia coli O157:H7 str. 1125]
          Length = 200

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 140 MLANEVIIEAHGACYQVIT-DFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              + V   A       +   FL    + +         +L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGIMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|302327479|gb|ADL26680.1| transcriptional regulator, LuxR family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 450

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + LT R+   L L   G T+ EI   LG+S +TV  +L +    L+  NRI+A+
Sbjct: 8   QELTPRQKEILSLLRKGLTNAEICRTLGISANTVKVHLANIYKILEVTNRIEAV 61


>gi|294142434|ref|YP_003558412.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328903|dbj|BAJ03634.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 221

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 143 NEVIIEAHGACYQVITDFLEL-------FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            + +        ++    +          +  ++  + LT RE + ++L   G  ++EIA
Sbjct: 118 ADELWYDRTLISKMFRQLVSRLDKTNDYSQDNAAMLQMLTNRERTIIKLVSSGARNKEIA 177

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +L +S HTV A++ S   K  + NR++ +  A
Sbjct: 178 HQLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|260199910|ref|ZP_05767401.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis T46]
 gi|289442302|ref|ZP_06432046.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           T46]
 gi|289415221|gb|EFD12461.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           T46]
          Length = 882

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIA 195
           E    A                      +KR +    +LT  E   ++L  +  ++++IA
Sbjct: 783 EDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSERLSNKDIA 842

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++L +S  TV  +L     KL   +R+Q + +A R G
Sbjct: 843 KRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|288803367|ref|ZP_06408800.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
 gi|288334187|gb|EFC72629.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
          Length = 313

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIA+ L +S +TV  +  +   KL   +       AI  
Sbjct: 244 EVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 303

Query: 232 GYI 234
             +
Sbjct: 304 NLV 306


>gi|229521769|ref|ZP_04411187.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80]
 gi|229341363|gb|EEO06367.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80]
          Length = 209

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +     LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+
Sbjct: 142 DLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAV 201

Query: 226 AK 227
             
Sbjct: 202 IL 203


>gi|218263259|ref|ZP_03477435.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222833|gb|EEC95483.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii
           DSM 18315]
          Length = 192

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 8/132 (6%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
            V      LP       +  G    G +  T+   + A++ II         +       
Sbjct: 60  FVLYADFFLPRRSKTMVLIDGAEDEGGLSATNHITIKASQEIIIEQ------MEQLFTGE 113

Query: 165 KKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
               S+   + L+ RET  LQL   G T++EIA+KL +S++TV ++  + T KL      
Sbjct: 114 NNSISSENNKELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVS 173

Query: 223 QAIAKAIRFGYI 234
                AI  G I
Sbjct: 174 GLTFYAIMNGII 185


>gi|163803797|ref|ZP_02197650.1| regulatory protein CsgD [Vibrio sp. AND4]
 gi|159172395|gb|EDP57268.1| regulatory protein CsgD [Vibrio sp. AND4]
          Length = 213

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +    G    +I ++        S   +LT RE   L+L   G ++++IA +L LS  TV
Sbjct: 122 LWLPRGYLEALINNYRHSNISMDSQHDSLTSRERQILELLAYGISNQQIASQLFLSESTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFG 232
            +++     KLD   R  AI      G
Sbjct: 182 KSHIYKLYKKLDVHCRNDAIKVVRMNG 208


>gi|89902142|ref|YP_524613.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89346879|gb|ABD71082.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 262

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG + P+     +     + S+        ++    +    I        +  S    
Sbjct: 141 MRAGAS-PISPMIARRVLSKYQSDRRENNR--VLAPVLSSSIAIKSEATEDGEAKSQRGL 197

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G++  EIA   GLSVHTV  ++ +   KL   ++ +A+ +A R G 
Sbjct: 198 LSPREQEVLALIARGFSYTEIARLQGLSVHTVQTHIKNLYGKLSVHSKSEAVFEATRMGL 257

Query: 234 I 234
           +
Sbjct: 258 L 258


>gi|24380308|ref|NP_722263.1| putative response regulator [Streptococcus mutans UA159]
 gi|290579719|ref|YP_003484111.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24378323|gb|AAN59569.1|AE015020_4 putative response regulator [Streptococcus mutans UA159]
 gi|254996618|dbj|BAH87219.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 226

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            N+++ E   +Q  G G +++EIA KL LS  T+  YL +   KL+  +R Q    A++ 
Sbjct: 155 ENISKAEWKIIQQIGFGLSNKEIAAKLFLSEGTIRNYLSTILSKLNLRDRTQLAIWAVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|89092784|ref|ZP_01165736.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
 gi|89082809|gb|EAR62029.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
          Length = 223

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 4/119 (3%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARNLT 175
           FP  +        +          E +   H        ++     E      ++  +LT
Sbjct: 103 FPAHVVNAGAKGFLTKRCAPDELLEAVKAIHAGEEYITEEIRLRITEGGSADGASLASLT 162

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE     L  +G T   +AE++ LS  TV+A+  +   KL   N  + +  AIR   +
Sbjct: 163 KRELQIFSLLAEGRTVSIVAEEMFLSPKTVHAHRTNIFRKLKISNNSELVHLAIRHNIV 221


>gi|289642550|ref|ZP_06474693.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507638|gb|EFD28594.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 389

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 33/65 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L          LT RE   L L   G T+ +IA++L +S  TV +++     KL A NR 
Sbjct: 313 LAASAPRLPDGLTPREREVLALLASGATNAQIADRLTVSETTVKSHVKHILRKLHASNRA 372

Query: 223 QAIAK 227
           +AIA+
Sbjct: 373 EAIAR 377


>gi|150004020|ref|YP_001298764.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254882923|ref|ZP_05255633.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294778059|ref|ZP_06743493.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319639728|ref|ZP_07994460.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|149932444|gb|ABR39142.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254835716|gb|EET16025.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294448117|gb|EFG16683.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317388644|gb|EFV69491.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 254

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELF 164
            +   L    +  PV L    + ++   +  L       +V+I  H      I  F E  
Sbjct: 127 EKHPHLIHHKLT-PVLLSGKGDIWLALCTVSLSPEKNIGDVVISDHTCTDHYIYSF-EGR 184

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + R      L++RE   LQL+  G ++ EI E L +  +TV  +      KL A N  +A
Sbjct: 185 RWRKQPELILSDREKEILQLSVKGLSNTEIGETLFIDANTVKFHKKKIFEKLHAENITEA 244

Query: 225 IAKAIRFGYI 234
           +  A     I
Sbjct: 245 VGIAANLRLI 254


>gi|119899725|ref|YP_934938.1| LuxR family DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119672138|emb|CAL96052.1| probable DNA-binding response regulator, LuxR family [Azoarcus sp.
           BH72]
          Length = 208

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 2/108 (1%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQL 184
             +G+V   S    L   V +   G             +  +  +    LT  +T  L+L
Sbjct: 98  GASGFVSKASSGDTLLQAVRVVLDGGVCTPEAATQSGRRSAAPVSERFGLTAAQTRVLEL 157

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              G T+ EIA+ LGLS  TV  ++ +    L   NR QA+    R G
Sbjct: 158 LAQGKTNREIADLLGLSEGTVKVHMSAIFRALGVSNRAQALVVIARHG 205


>gi|59712981|ref|YP_205757.1| two-component response regulator [Vibrio fischeri ES114]
 gi|59481082|gb|AAW86869.1| two-component response regulator [Vibrio fischeri ES114]
          Length = 209

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 ++    LT ++   L +  DG  +++IA  L +S  T+ A++ +   KL   NR
Sbjct: 138 AACDDLATKIAALTPQQYKVLGMLSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNR 197

Query: 222 IQAIAK 227
            QA+  
Sbjct: 198 TQAVIL 203


>gi|323494771|ref|ZP_08099870.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323310964|gb|EGA64129.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 219

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +LT R+   L+    G  +++IA  L +S  TV +++ S   KL   NR+QA+
Sbjct: 153 SLTRRQLMVLKCMTKGEANKQIAYNLNVSETTVKSHVSSILKKLGVTNRVQAV 205


>gi|319793602|ref|YP_004155242.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596065|gb|ADU37131.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 212

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEI 194
              + +E ++EA     +      E  +  ++A      L+ERE   L     G T++EI
Sbjct: 111 EKPVDDEQLLEALQQAVRQHVRTRERSQADNAARERVAQLSEREREVLAFIVQGLTNKEI 170

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A  L LS  TV  +  +   KLD  +  Q I +
Sbjct: 171 ARTLALSPRTVETHRANLFAKLDCDSLAQLIRR 203


>gi|261493914|ref|ZP_05990423.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496858|ref|ZP_05993227.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307475|gb|EEY08809.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310417|gb|EEY11611.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 583

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L   G ++EEIA +L +S  TV+ ++ +   K    +R      AI   
Sbjct: 84  GLSKREIELLTLISSGLSNEEIANELCISKRTVDKHIENIFAKTHTESRTLLAVFAITEH 143

Query: 233 YIC 235
            +C
Sbjct: 144 LVC 146


>gi|213855797|ref|ZP_03384037.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 153

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 8/139 (5%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++ ++ +++   L     R++   F  Y +      P  +  I     Y       
Sbjct: 14  LLRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKISLRTTYPQAWVTH 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     + W  +          Q             G+   V L
Sbjct: 71  YQSENYFAIDPVLKPENFRQGHLHWDDVLFH-----EAQAMWDAAQRFGLRRGVTQCVML 125

Query: 125 GFHKNGYVIFTSEFLMLAN 143
                G++ F+   L  ++
Sbjct: 126 PNRALGFLSFSRSSLRCSS 144


>gi|254425145|ref|ZP_05038863.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192634|gb|EDX87598.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 223

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            LT  E   +Q    G  + +IA++L +S  T+ +++ +   K    NR +    A+
Sbjct: 167 ELTPTELKVVQFVARGMANRQIADELRVSQRTIESHVSNMLGKTGLHNRTELARWAV 223


>gi|15642696|ref|NP_232329.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586612|ref|ZP_01676397.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121726730|ref|ZP_01679955.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|153212581|ref|ZP_01948328.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153803422|ref|ZP_01958008.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153817412|ref|ZP_01970079.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153821283|ref|ZP_01973950.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153825520|ref|ZP_01978187.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|153828368|ref|ZP_01981035.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|227082817|ref|YP_002811368.1| transcriptional regulator,LuxR family [Vibrio cholerae M66-2]
 gi|229509830|ref|ZP_04399311.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229513623|ref|ZP_04403087.1| transcriptional regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229516952|ref|ZP_04406398.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229527372|ref|ZP_04416764.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229606755|ref|YP_002877403.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|254225427|ref|ZP_04919038.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|254285892|ref|ZP_04960854.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|254851239|ref|ZP_05240589.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255744339|ref|ZP_05418291.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262158551|ref|ZP_06029666.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|262170055|ref|ZP_06037744.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|298500482|ref|ZP_07010286.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657298|gb|AAF95842.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549171|gb|EAX59204.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121630891|gb|EAX63273.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124116452|gb|EAY35272.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124121035|gb|EAY39778.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|125622061|gb|EAZ50384.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|126511998|gb|EAZ74592.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126521215|gb|EAZ78438.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|148876198|gb|EDL74333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|149740805|gb|EDM54896.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|150424074|gb|EDN16013.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|227010705|gb|ACP06917.1| transcriptional regulator,LuxR family [Vibrio cholerae M66-2]
 gi|229335004|gb|EEO00489.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229346015|gb|EEO10987.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229349500|gb|EEO14456.1| transcriptional regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229353304|gb|EEO18243.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229369410|gb|ACQ59833.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|254846944|gb|EET25358.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255737864|gb|EET93257.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262021463|gb|EEY40175.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262029712|gb|EEY48361.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|297540651|gb|EFH76708.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485173|gb|AEA79580.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 209

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|237722483|ref|ZP_04552964.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229448293|gb|EEO54084.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 216

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           G ++  +    + + ++  AH        IT+ L +   +      LT  E   L+L   
Sbjct: 103 GMILKENSGEEIHSALMCTAHGERFLCHQITNLLIIGSDKPEIHSVLTVTEIDILKLIAH 162

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G + +EIA +   S+HT+  +  +   KL   N  +A    +R G I
Sbjct: 163 GKSVKEIALERTSSIHTIITHKKNIFRKLGVNNVYEATKYTLRAGLI 209


>gi|110835379|ref|YP_694238.1| transcription regulator [Alcanivorax borkumensis SK2]
 gi|110648490|emb|CAL17966.1| transcription regulator, putative [Alcanivorax borkumensis SK2]
          Length = 203

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
             I    A     ++   L    +   A  LT ++ + L +  +G+ ++EIA +L +SV+
Sbjct: 113 FAIREIMAGRSYFSESFRLMAGAAPEEALTLTRQQLAILTMLQEGHGNKEIARQLFVSVN 172

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+  +L     KLD  NR   I KA + G +
Sbjct: 173 TIKTHLRLLYEKLDVPNRTACIEKARQIGLL 203


>gi|325000399|ref|ZP_08121511.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 219

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS------AARNLTER 177
           L     G+++  +    +   V   A G           L    +           LT R
Sbjct: 95  LRAGATGFLLKRTPPRDIVRAVHTVAAGESLLFPAALRGLAAGFAPDGGDHLQDAGLTAR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L L   G ++ EIA +L L V TV  ++     K  + +R QA+  A   G++
Sbjct: 155 EGEVLALMARGLSNAEIARELYLGVETVKTHVAGVLAKTGSRDRTQAVVAAYESGFV 211


>gi|315924040|ref|ZP_07920267.1| LuxR family DNA-binding response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622666|gb|EFV02620.1| LuxR family DNA-binding response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 198

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAAR 172
              I  P     ++     F S          +  +   +   +  +    +   S+  +
Sbjct: 78  NDHIIVPANNQLYEFWTSPFVSRDENFDK---VILNYTLFIFRSSHVTSEDRLDYSNIKQ 134

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT+RE     L   G T+  IAEK  +S++TV  ++     KL+  NR+  +  
Sbjct: 135 KLTDREWEIAVLISQGLTNTAIAEKTFISLNTVKTHIQHIYEKLNVPNRVSLMRL 189


>gi|293606796|ref|ZP_06689147.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292814800|gb|EFF73930.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 221

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                       L++RE S  +    G  + +IA +L LS  TV+ Y      K++  N+
Sbjct: 141 RQEHSDVLPHLLLSDRELSVFRHLASGLNNSDIARRLFLSDKTVSTYKSRILTKMNLRNQ 200

Query: 222 IQAIAKAIRFGYI 234
              +  AIR   I
Sbjct: 201 TDLVRYAIRHHLI 213


>gi|218710848|ref|YP_002418469.1| LuxR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218323867|emb|CAV20228.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 209

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182
                G++  +S+   L + +    +G     + +          +     LT ++   L
Sbjct: 99  SHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVL 158

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +  DG  +++IA +L +S  T+ A++ +   KLD  NR QA+  
Sbjct: 159 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203


>gi|84393053|ref|ZP_00991819.1| Response regulator [Vibrio splendidus 12B01]
 gi|84376305|gb|EAP93187.1| Response regulator [Vibrio splendidus 12B01]
          Length = 209

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182
                G++  +S+   L + +    +G     + +          +     LT ++   L
Sbjct: 99  SHGAFGFIPKSSDMRELVSALNQVLNGDPFFPEGLITNNAACSDLAEKLSTLTPQQYKVL 158

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +  DG  +++IA +L +S  T+ A++ +   KLD  NR QA+  
Sbjct: 159 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203


>gi|308176449|ref|YP_003915855.1| helix-turn-helix domain-containing protein [Arthrobacter
           arilaitensis Re117]
 gi|307743912|emb|CBT74884.1| helix-turn-helix domain-containing protein [Arthrobacter
           arilaitensis Re117]
          Length = 432

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 161 LELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           L L    S AA     +L  RE   LQL   G  +  I++ LG+S +TV  ++ +   K+
Sbjct: 352 LPLDAPPSDAADIAEWSLGGREFEVLQLLAAGQRNRAISQALGISENTVKFHVRNLFKKM 411

Query: 217 DAVNRIQAIAKAIRFG 232
              +R QA+A A   G
Sbjct: 412 GVGSRAQAVALAHSHG 427


>gi|241764572|ref|ZP_04762589.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241365975|gb|EER60596.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 237

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 52/189 (27%), Gaps = 10/189 (5%)

Query: 44  FPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ 103
            P  +  +  L N+      +  I                +     Q +       + G 
Sbjct: 50  APALRPDVILLDNHLPGVTGVDAIRGLREVSPSSRVLMLTVSE-DAQDLATALRNGAQGY 108

Query: 104 LSV----RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
           L       L    +  A    PV         V           + +             
Sbjct: 109 LLKTIDGDLLAQAIRRAAAGEPVVSPELMGKLVAAFQSQGAPEADAL-----EPGSAERS 163

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                     A+  L+ RE   L+    G +++EIA  L ++  TV  ++     KL   
Sbjct: 164 QPPAAFDVGDASTPLSPREEEVLREIVRGASNKEIARVLDIAETTVKIHVQHILRKLGLS 223

Query: 220 NRIQAIAKA 228
           +R+QA   A
Sbjct: 224 SRVQAAVYA 232


>gi|213027871|ref|ZP_03342318.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 137

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 39  PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 98

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 99  IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 132


>gi|139439378|ref|ZP_01772819.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC
           25986]
 gi|133775157|gb|EBA38977.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC
           25986]
          Length = 209

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +R +A  +LT+RE    +L   G  ++EIA    +   TV  ++ S   K+   NR Q 
Sbjct: 143 PRRPAAFASLTDREFEVAELIARGLDNKEIAATAYMGEGTVRNHISSILAKMGLRNRTQ- 201

Query: 225 IAKAIRFG 232
           IA A   G
Sbjct: 202 IAIAYLRG 209


>gi|88860328|ref|ZP_01134966.1| two-component system regulatory protein [Pseudoalteromonas tunicata
           D2]
 gi|88817526|gb|EAR27343.1| two-component system regulatory protein [Pseudoalteromonas tunicata
           D2]
          Length = 204

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  ++S  + +LT +E S L+    G  ++ IA  L  S  T+  ++     KL   +R 
Sbjct: 133 LLNQQSPPSYHLTAKELSVLRCMSLGMANKAIALYLDNSEGTIRNHVSQIIAKLAVHDRT 192

Query: 223 QAIAKAIRFGYI 234
           QA+ KAI+   +
Sbjct: 193 QAVIKAIQNQLV 204


>gi|299133991|ref|ZP_07027184.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
 gi|298590738|gb|EFI50940.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
          Length = 216

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +        LTERE   +    +G +++E A +L +S  T+  +L     KL   NR + 
Sbjct: 142 ETPGQPLSYLTEREREIMHEISEGISNKEAARRLNISEGTIKLHLHHIYHKLSIKNRAEL 201

Query: 225 IAKA 228
           +A A
Sbjct: 202 VAMA 205


>gi|296283884|ref|ZP_06861882.1| transcriptional regulator, AraC type [Citromicrobium bathyomarinum
           JL354]
          Length = 822

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
            ++  + +   E  G   + H  S +  +++         E + +    L   L    G+
Sbjct: 654 EEAIALLSDAREEAGRSGVVHSVSRMTQLLFALRHVSGDREGALREVAELAS-LGIATGM 712

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
                                    +            +   +   +   ++A  L++RE
Sbjct: 713 RQTCADMLGGYLADYVAQLSAQPDADEAQ------LHFLRSVMNRDRAARASASELSKRE 766

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T  L+    G + +E+A +LG+S H V  +L     KL   +R+ A+ +A   G+I
Sbjct: 767 TDVLRALATGGSDKELARELGISDHGVRFHLKGVFKKLGVHDRLSAVVRAQEKGWI 822


>gi|291302034|ref|YP_003513312.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571254|gb|ADD44219.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 3/134 (2%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +                      V         +   + L  
Sbjct: 84  FDLDEYVFAALRAGASGFLVKDATPAELTGGIRVVAAGDAAVAPGVTRRLIERFAEHLPA 143

Query: 164 FKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            ++       L   TERE   L     G +++EIAE + +S  TV  ++G    KL   +
Sbjct: 144 TERVPPGDDRLNSLTEREHDVLVQVARGRSNQEIAELIHVSQATVKVHVGRILAKLGLRD 203

Query: 221 RIQAIAKAIRFGYI 234
           R Q I  A   G +
Sbjct: 204 RAQVIVFAYENGVV 217


>gi|209696228|ref|YP_002264158.1| transcriptional regulator, LuxR response regulator receiver
           [Aliivibrio salmonicida LFI1238]
 gi|208010181|emb|CAQ80508.1| transcriptional regulator, LuxR response regulator receiver
           [Aliivibrio salmonicida LFI1238]
          Length = 209

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           +     ++   +LT ++   L +  DG  +++IA  L +S  T+ A++ +   KL   NR
Sbjct: 138 QACDDLATRISSLTPQQYKVLGMLSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNR 197

Query: 222 IQAIAK 227
            QA+  
Sbjct: 198 TQAVIF 203


>gi|149911017|ref|ZP_01899646.1| regulatory protein CsgD [Moritella sp. PE36]
 gi|149805920|gb|EDM65906.1| regulatory protein CsgD [Moritella sp. PE36]
          Length = 230

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
             +      +   R      LT RE   L+    G ++ EIA+ L +S HT+ ++L +  
Sbjct: 154 ISIYRSTKAVDLDRKP---ELTTREQEILRQLMTGSSNLEIADALYVSEHTIKSHLYNVF 210

Query: 214 VKLDAVNRIQAIAKAIR 230
            K+   NR+QA++ A  
Sbjct: 211 KKIKVKNRLQAVSWAKE 227


>gi|148272754|ref|YP_001222315.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830684|emb|CAN01624.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 228

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 14/108 (12%)

Query: 140 MLANEVIIEAHG--------ACYQVITDFLELFKK------RSSAARNLTERETSCLQLA 185
               E ++ A                   LE F           A  +LT RE     LA
Sbjct: 114 DADPEFLLAAIRTVHAGNSVIAASATRQLLEHFDPGSRPRVAPPAFMSLTSREREIFVLA 173

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             G ++ EIA+   LS  TV  ++     KL   +R+Q +  A     
Sbjct: 174 ARGLSNAEIAQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAFEHRL 221


>gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
 gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
          Length = 245

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F       + +       ++     L   +     + T RE S LQL  +G  ++EI
Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEAL-PSKDPVVHSFTPREASVLQLVAEGLMNKEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+     K    +R + +  A+    +
Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|56696372|ref|YP_166729.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678109|gb|AAV94775.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3]
          Length = 238

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 19/224 (8%)

Query: 15  QELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
            E+  R+   + + +KA  FA Y  +S      +Q + C   N   D+          + 
Sbjct: 11  SEVRRRVGQKLLDLLKADYFASYVWDS----DAQQFVSCVQINMTDDNLRRY-ESYFQFH 65

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D                 +     +    +             G+ +         G + 
Sbjct: 66  DPITPTLQRRKKATPVSEVMRHDRL-VKTEFFNDFLKQDGLCYGMNYFAYDRGDNIGDLR 124

Query: 134 FTS------------EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
                          +F+      ++ A             L   + +     T RE   
Sbjct: 125 IWRGAHREDFTPRDAQFVDAVGPSLVNALIRARSAKEQVPSLRFAQIADDLGFTSREAEV 184

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             L   G T EEI  KLG S  T+ +++ S   K     R Q  
Sbjct: 185 SDLLVTGLTDEEICTKLGFSKPTLRSHIASIFRKSGLNRRSQLA 228


>gi|29345930|ref|NP_809433.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568671|ref|ZP_04846082.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|29337824|gb|AAO75627.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842744|gb|EES70824.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 203

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 148 EAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +      ++     L   ++       L++RE   +     G T++EIAE L LS+HTV 
Sbjct: 108 DLDILSKKIHGLLNLASEEEELDNQETLSQREKEIVVCVVKGMTNKEIAENLFLSIHTVI 167

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  + + KL   +       AI    +
Sbjct: 168 THRRNISKKLQIHSAAGLTIYAIVNKLV 195


>gi|298252261|ref|ZP_06976064.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546853|gb|EFH80721.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1056

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 14/123 (11%)

Query: 126  FHKNGYVIFTSEFLMLANEVIIEA----------HGACYQVITDFLELFKKRSSAA---- 171
                G++    +       ++ E                 +         + SS      
Sbjct: 934  ARGEGFLRLFLDEGEEVETLLRELLPSLTEKPLRAWTQSILHAFAHPFSPQTSSPDSTLF 993

Query: 172  RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              L+ +E   L L   G ++ EIAE L +SV+TV  ++ S   KLD  +RI+A A A R 
Sbjct: 994  EPLSTQEQRVLALLAAGRSNPEIAETLIISVNTVKGHVKSIYRKLDVNSRIEASAAASRL 1053

Query: 232  GYI 234
              I
Sbjct: 1054 KLI 1056


>gi|256376957|ref|YP_003100617.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921260|gb|ACU36771.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 492

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 1/113 (0%)

Query: 123 RLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
                        +     ++ EV          V+     L          L+ RE   
Sbjct: 359 FDPAGVRALATRIAPVGGTISVEVDHRLGATATLVLPLRRALAAPEEVPDFGLSARELDV 418

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G  + EIA ++ LS  T+  +L     KL    R +A A A+ FG +
Sbjct: 419 LSRVARGLRNREIAREIQLSPATIKFHLVRIFEKLGVGTRGEAAAVAVEFGLV 471


>gi|104781277|ref|YP_607775.1| response regulator [Pseudomonas entomophila L48]
 gi|95110264|emb|CAK14971.1| putative response regulator, LuxR family [Pseudomonas entomophila
           L48]
          Length = 130

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              GYV+  +        +    HG     I+       +  S A  LT R+   LQL  
Sbjct: 17  GLLGYVVKAANLEDFTQAMQHILHGQKTFPIS-----DDRAPSEAVRLTRRQQEILQLLH 71

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G  S+E+A +LGLS+ TVN ++      L   NR  A+++A+  GY+
Sbjct: 72  RGLASKEVAAELGLSLGTVNNHVTGLMRVLGVTNRTHAVSRAMDLGYL 119


>gi|127514122|ref|YP_001095319.1| LuxR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639417|gb|ABO25060.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4]
          Length = 220

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL +   +  + LT RE + +QL   G  ++EIA++L +S HTV A++ S   K  + NR
Sbjct: 144 ELTQDMVAMLQKLTTRERTIIQLVSSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNR 203

Query: 222 IQAIAK 227
           ++ +  
Sbjct: 204 VELLRW 209


>gi|302531276|ref|ZP_07283618.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440171|gb|EFL11987.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 229

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++  + +  LT RE   ++ A  G T+ EI  +L LS+ TV  +L S   K+ A NR++ 
Sbjct: 159 REAPAPSEPLTARELDVVKAAARGLTNTEIGAELFLSLSTVKTHLASVQGKVGARNRVEI 218

Query: 225 IAKAIRFGYI 234
            A A R G +
Sbjct: 219 AAWAWRSGVV 228


>gi|293610045|ref|ZP_06692346.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|292827277|gb|EFF85641.1| two component transcriptional regulator [Acinetobacter sp. SH024]
          Length = 211

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S   +L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 198 KLTHLAIRYGLI 209


>gi|227495115|ref|ZP_03925431.1| response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831567|gb|EEH63950.1| response regulator [Actinomyces coleocanis DSM 15436]
          Length = 202

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  S      T+RE   L    D  T  E+A KL LS  TV  ++ +   K +A NR +A
Sbjct: 133 EALSLPNSPFTQREKEILTAFTDSATVAEVAAKLFLSPGTVRNHISNIISKTNAKNRAEA 192

Query: 225 IAKAIRFGYI 234
              A   G+I
Sbjct: 193 ARIAKENGWI 202


>gi|206969319|ref|ZP_03230274.1| Two-component protein Kinase [Bacillus cereus AH1134]
 gi|206736360|gb|EDZ53518.1| Two-component protein Kinase [Bacillus cereus AH1134]
          Length = 595

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +     +AA  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 508 QGMSHKIFEKFDEQKETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 567

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 568 YASTAYTKLGVCNKEEAVQKALEIGII 594


>gi|58425447|gb|AAW74484.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 1005

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA +L LS +TV  +L +
Sbjct: 907 RALTIQALLERLSDDDDPAGDIFSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKN 966

Query: 212 ATVKLDAVNRIQAI--AKAIRFGYI 234
              KLDA +R  A+  A+A++ G +
Sbjct: 967 LYRKLDARSRESALAQAQAVQRGLL 991


>gi|328880209|emb|CCA53448.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 200

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLA 185
             G  +        A+   + A     +++  F +L   R        +T RE   L   
Sbjct: 88  DTGPDLLAQAVRSAADGEALIAPSVTVRLLQAFADLPAGRPVTQPVSPVTAREEQVLLAV 147

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             G T+ EIA+ L +S+ TV  +L S   KL A NR++    A  
Sbjct: 148 ARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYE 192


>gi|320193968|gb|EFW68601.1| Putative regulator [Escherichia coli WV_060327]
          Length = 200

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEE 193
              + V   A       +         R+         ++L+ R+   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTMPEKDIKDLKSLSARQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|238795676|ref|ZP_04639190.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
 gi|238720402|gb|EEQ12204.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
          Length = 209

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 13/160 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      ES   L  RL   +  F  I   +             G   + ++   
Sbjct: 48  VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107

Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              E++                    L     +      LT RE    QL   G + + I
Sbjct: 108 PD-ELVQALRTVSGGGLYLCSDALRALRHMPLQPPQLAVLTPREKEIFQLLIKGISVKSI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+L LS  TV+ +  +   KL     ++ +  A++   +
Sbjct: 167 AEQLLLSHKTVHVHRANILGKLQCETTVELVHFALQHQLL 206


>gi|126731865|ref|ZP_01747669.1| putative two-component response regulator [Sagittula stellata E-37]
 gi|126707692|gb|EBA06754.1| putative two-component response regulator [Sagittula stellata E-37]
          Length = 217

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 40/88 (45%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +     +  + I +   L    +     LT+RET  L L   G  + E+A +LGL+  TV
Sbjct: 120 LPALSPSIARRIMEHFSLTGPSAPPTHGLTDRETEVLALISRGLRNSEVARELGLAETTV 179

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +Y+ S   KL   +R +A   A R G 
Sbjct: 180 ASYIKSIYGKLGISSRAEASWHATRLGL 207


>gi|56420621|ref|YP_147939.1| two component response regulator [Geobacillus kaustophilus HTA426]
 gi|261420284|ref|YP_003253966.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297529750|ref|YP_003671025.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319767094|ref|YP_004132595.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|56380463|dbj|BAD76371.1| two component response regulator [Geobacillus kaustophilus HTA426]
 gi|261376741|gb|ACX79484.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|297253002|gb|ADI26448.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
 gi|317111960|gb|ADU94452.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 209

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   ++L   GYT+ +IA KL +S  TV ++  +   KL    + + I  A+
Sbjct: 142 PRSPLTNREREIVRLTFLGYTNNQIANKLKISPKTVESHKANIMQKLGIKEKHELIQYAL 201

Query: 230 RF 231
           + 
Sbjct: 202 KN 203


>gi|22126469|ref|NP_669892.1| response regulator [Yersinia pestis KIM 10]
 gi|45441287|ref|NP_992826.1| GerR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51595939|ref|YP_070130.1| GerR family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806869|ref|YP_650785.1| GerR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108812565|ref|YP_648332.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|145598686|ref|YP_001162762.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149366494|ref|ZP_01888528.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153949615|ref|YP_001401371.1| LuxR family transcrptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162418347|ref|YP_001606184.1| LuxR family DNA-binding response regulator [Yersinia pestis Angola]
 gi|165924363|ref|ZP_02220195.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940157|ref|ZP_02228689.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011786|ref|ZP_02232684.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211236|ref|ZP_02237271.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400261|ref|ZP_02305774.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421829|ref|ZP_02313582.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167469680|ref|ZP_02334384.1| DNA-binding response regulator, LuxR family protein [Yersinia
           pestis FV-1]
 gi|170024724|ref|YP_001721229.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186895033|ref|YP_001872145.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928714|ref|YP_002346589.1| putative GerR family transcriptional regulator [Yersinia pestis
           CO92]
 gi|229841563|ref|ZP_04461722.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229843674|ref|ZP_04463817.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229894221|ref|ZP_04509404.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides A]
 gi|229902951|ref|ZP_04518068.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|270486738|ref|ZP_06203812.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294503549|ref|YP_003567611.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|21959462|gb|AAM86143.1|AE013860_9 response regulator [Yersinia pestis KIM 10]
 gi|45436147|gb|AAS61703.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51589221|emb|CAH20842.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776213|gb|ABG18732.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|108778782|gb|ABG12840.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115347325|emb|CAL20221.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|145210382|gb|ABP39789.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149290868|gb|EDM40943.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152961110|gb|ABS48571.1| DNA-binding response regulator, LuxR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351162|gb|ABX85110.1| DNA-binding response regulator, LuxR family [Yersinia pestis
           Angola]
 gi|165911903|gb|EDR30548.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923423|gb|EDR40555.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989251|gb|EDR41552.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207007|gb|EDR51487.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960314|gb|EDR56335.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050210|gb|EDR61618.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|169751258|gb|ACA68776.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186698059|gb|ACC88688.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229680398|gb|EEO76497.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|229689282|gb|EEO81345.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229697929|gb|EEO87976.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229703619|gb|EEO90635.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides A]
 gi|262361591|gb|ACY58312.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis D106004]
 gi|270335242|gb|EFA46019.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294354008|gb|ADE64349.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|320015551|gb|ADV99122.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 209

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    I      ES   L  RL   +  F  I   +             G   + ++   
Sbjct: 48  VHVAVIDISMPDESGLSLLKRLRQQIPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCD 107

Query: 141 LAN--EVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            A   + +   +G    +       L    ++ S    LT RE    QL   G + + +A
Sbjct: 108 PAALVQALRTVNGGGLYLCTDALRALRQMPQQPSKLTILTPREKEIFQLLVKGISVKALA 167

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+L LS  TV+ +  +   KL+    I+ +  A++   +
Sbjct: 168 EQLSLSHKTVHVHRANILSKLNCETTIELVHFALQHQLL 206


>gi|325298413|ref|YP_004258330.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
 gi|324317966|gb|ADY35857.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
          Length = 190

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           LA + +++A     Q     L       + A +L+ RE   L L   G  ++EIAE+L +
Sbjct: 95  LAQDELLKAIVRLRQYGHHSL---PPLHATAHDLSPREIEVLVLLTKGCINKEIAERLNI 151

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S+ TV ++  + T KL   +       A+  GY+
Sbjct: 152 SLTTVISHRKNITEKLGIKSVSALAIYAVMHGYV 185


>gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 222

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                R S++  LTERE   L+    G T+++IA+ L LS  TVN +L    VKL    R
Sbjct: 149 AAAYPRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETR 208

Query: 222 IQAIAKAI 229
             A + A+
Sbjct: 209 TAATSVAL 216


>gi|259047361|ref|ZP_05737762.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035983|gb|EEW37238.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 202

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+ERE   L L  +G+ ++EIAEK+ LS  TV  YL +   KL+  +R Q    
Sbjct: 144 LSERENELLYLVAEGFNNKEIAEKMYLSEGTVRNYLSALLEKLELRDRTQLAVY 197


>gi|111220014|ref|YP_710808.1| putative protein-glutamate methylesterase [Frankia alni ACN14a]
 gi|111147546|emb|CAJ59199.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a]
          Length = 211

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G ++ EIA +L + V TV  ++     KL A +R Q +  A   G
Sbjct: 136 RLTEREREVLVQVAAGLSNSEIARRLFVGVTTVKTHVSRLLTKLGARDRAQLVVAAYESG 195


>gi|126433524|ref|YP_001069215.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS]
 gi|126233324|gb|ABN96724.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS]
          Length = 526

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT RE   L L   G T++EIA +L +S  T   ++     K+   NR+ A 
Sbjct: 454 GPGPRQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAAS 513

Query: 226 AKAIRFGYI 234
             A+  G +
Sbjct: 514 LYALEHGLL 522


>gi|67921004|ref|ZP_00514523.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67857121|gb|EAM52361.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 231

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE+  L L   G ++ EI ++L LS  T+  Y+ S   K D  NR + +  A    
Sbjct: 162 ELTRRESEVLDLLTMGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFAFDHH 221

Query: 233 Y 233
            
Sbjct: 222 L 222


>gi|94310830|ref|YP_584040.1| LuxR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354682|gb|ABF08771.1| putative transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 266

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 69/237 (29%), Gaps = 12/237 (5%)

Query: 3   ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP----RRQQLICELHNYD 58
                G+   +L  L   L  +     A    +  + +          R +L+  LH   
Sbjct: 24  AEFSAGEADDALTHLLTTLCAMVTAQNALWAVVVRLPAVARKDPLFGWRPRLVRLLHPVP 83

Query: 59  L---DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIES-SGQLSVRLEGGLLP 114
                  +  + L     D       SG  P     + E    E   G    R    +  
Sbjct: 84  AMVASVQEQFDTLWSGNVDSSHVVAMSGDEPFRANLLFEAMPAEWFEGAHYRRHYLEVGH 143

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLE---LFKKRSSA 170
              I     L      ++    +          +E  G     +  +     L      A
Sbjct: 144 ADSIQVRCSLNDDVRIHLFVFRDLQAPRFSAPDLELLGFVMHGLRWYYRQQLLSHGLLIA 203

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             +LT  E   L    DG T ++IA+KL  S +T + ++ S   K +  NR    A 
Sbjct: 204 DASLTSAERRVLLGLLDGLTEKQIAQKLEQSPNTTHVHIKSIYAKFNVRNRSTLTAL 260


>gi|300790143|ref|YP_003770434.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799657|gb|ADJ50032.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 38/84 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               Q   D     +       +L+ERE   + L G G ++ EI  +L LS  TV  Y+ 
Sbjct: 132 ARMVQSHRDEQRAAQPARKLLASLSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVS 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   K+ A NR+QA   A R G +
Sbjct: 192 AVLSKIGAANRVQAALLAYRGGLL 215


>gi|269955047|ref|YP_003324836.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303728|gb|ACZ29278.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 230

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN--------- 173
              +G+++ +S    L + V   A G       +    +E   +R  A            
Sbjct: 97  AGASGFMLKSSPRAHLLHAVRTAASGEALLDPSLTRRLVESHVRRPRAVEPGQTPAQLAG 156

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   LQ    G ++ EIA  L L+  TV  ++ +   KL   +R QA+      G 
Sbjct: 157 LSPRERDVLQALARGESNAEIAGTLFLAETTVKTHVAAVLRKLGLRDRTQAVILGYEIGL 216

Query: 234 I 234
           +
Sbjct: 217 V 217


>gi|187779968|ref|ZP_02996441.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC
           15579]
 gi|187773593|gb|EDU37395.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC
           15579]
          Length = 217

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL     S   NLT RE + ++   +G +++EIAE++ LS  T+   + +   KLD  +R
Sbjct: 144 ELNDDDISLKYNLTGREINIIREIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDR 203

Query: 222 IQAIAKAIRFGY 233
            Q    A +   
Sbjct: 204 TQIAIFAFKNNI 215


>gi|31790492|emb|CAD56670.1| putative regulatory protein [Citrobacter sp. Fec2]
          Length = 216

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA++ A
Sbjct: 156 LTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|94313776|ref|YP_586985.1| putative two component LuxR family transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357628|gb|ABF11716.1| putative two component transcriptional regulator, LuxR family
           [Cupriavidus metallidurans CH34]
          Length = 211

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L   R+     LT R+   L     G +++ IA  LGLS +TV  ++ +    L  V+R
Sbjct: 135 RLPHTRAYKPSQLTPRQLEVLNQLNLGRSNKVIAYHLGLSENTVRVHVAAILDHLGVVSR 194

Query: 222 IQAIAKAIRFGYI 234
           ++AI +A R G +
Sbjct: 195 VEAILEAQRRGLV 207


>gi|319784454|ref|YP_004143930.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170342|gb|ADV13880.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 249

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 20/230 (8%)

Query: 13  SLQELSPRLHLIQ-NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           + +ELS R        + +                    I +            +  +  
Sbjct: 25  TPEELSARFTAAASELLGSDR----AYVGFYRRDITSLTIDDAG--PDRWNRDYDARLY- 77

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D F   F S     +                     G    F  I     L     GY
Sbjct: 78  RQDPFFQRFASTRQDFLLPLSALRNGDFQRTPYYREFFGPSDSFDEITGVFNLDRLTAGY 137

Query: 132 VIFTSEFLMLANEV-----IIEAHGACYQVITDFLELFKKRS------SAARNLTERETS 180
           V F                   A  A   ++   L L + R        A   L+ RET 
Sbjct: 138 VTFLRRNGAEPFGEQDLATACAASSATRLILERLLHLCRFRHKGAAIGDARSRLSRRETE 197

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +   DG  ++ I+  L +S  TV  ++     KL   ++++ +A AIR
Sbjct: 198 IARHLVDGGNAKTISRCLAISPGTVRNHIKQIYRKLGVHSQVELLA-AIR 246


>gi|229524681|ref|ZP_04414086.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229338262|gb|EEO03279.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
          Length = 209

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|145226775|gb|ABP48141.1| putative two-component system response regulator [Rhodococcus sp.
           DK17]
          Length = 215

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A   ++                LT+++ + L L G+G T+ +IAE++ L+  TV  Y+ 
Sbjct: 128 RAAAALMAKLHSDAHAEDGPFAGLTDQQRTLLALLGEGLTNRQIAERMFLAEKTVKNYVS 187

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
               KL    R QA   A + 
Sbjct: 188 RLLTKLGVERRTQAAVLATKM 208


>gi|332521658|ref|ZP_08398111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332042747|gb|EGI78947.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 208

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L+ RE   L+L   G  ++EIA++L ++  TV+ Y      KL+  N +  + +A + 
Sbjct: 147 KKLSNREIEVLKLLTSGKRNKEIAQELDINEKTVSTYRARLMKKLNVTNLVDLVNQAKQL 206

Query: 232 GY 233
             
Sbjct: 207 AL 208


>gi|302874384|ref|YP_003843017.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307691015|ref|ZP_07633461.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302577241|gb|ADL51253.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 204

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++S    LTERE   L     G ++EEIA+ L +S HTV  ++ +   K +  NR Q
Sbjct: 136 DQNSMINQLTEREKDVLTEIRKGLSNEEIAKVLYISEHTVKKHVSNILSKFNLSNRTQ 193


>gi|157144304|ref|YP_001451623.1| DNA-binding transcriptional activator UhpA [Citrobacter koseri ATCC
           BAA-895]
 gi|157081509|gb|ABV11187.1| hypothetical protein CKO_00008 [Citrobacter koseri ATCC BAA-895]
          Length = 223

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166
           A I   V             G   F S+      E+I   H         +L      K 
Sbjct: 101 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 157

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 158 AAGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAR 217

Query: 227 K 227
           +
Sbjct: 218 R 218


>gi|160883312|ref|ZP_02064315.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483]
 gi|156111296|gb|EDO13041.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483]
          Length = 233

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+ E + L+    G T++EIA +  LS HT+N++  +   KL   N  +A   A+R G 
Sbjct: 166 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 225

Query: 234 I 234
           +
Sbjct: 226 V 226


>gi|111023556|ref|YP_706528.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110823086|gb|ABG98370.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 288

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLA 185
                 + +    +    +     G   ++                 +LT RE   L   
Sbjct: 179 RDIHAELRSVAQTVTDTSLQARLRGLSQRLAGILRPDADSADEDPGVHLTPREIDVLSHV 238

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T+ E A++L +   TV +YL SA  KLDA +R +A+  A R G +
Sbjct: 239 ALGCTNSEAAQRLSVGPETVKSYLRSAMSKLDARSRHEAVVTARRLGLL 287


>gi|108805868|ref|YP_645805.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108767111|gb|ABG05993.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 226

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPII---WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                 +    Y  + +     G  P        +             +R+         
Sbjct: 51  LLSRDVLGRRCY--EVVMGEREGGAPFCTYGCSVMHLAQAGRPVSSYDMRITTRSGQKRW 108

Query: 118 IAFP-VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176
           +    + +   +  Y++        A++ +  A G              +R      LT 
Sbjct: 109 VNVSNLSVDSEEGPYLVHLLRDSQGAHDALEMARGLIRLSSKKEAAGPGRRDIPT--LTP 166

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           R+   LQL   G T  EI+++L LS  TV  ++G+    LDA ++++A+A+A   G +
Sbjct: 167 RQLDVLQLISRGKTVREISQELYLSEATVRNHVGAVLRALDAHSQLEAVARARELGLL 224


>gi|37519917|ref|NP_923294.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210909|dbj|BAC88289.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 210

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V +       ++  + +  +ERE   L L G G  + EIA+ L L+  TV  ++  
Sbjct: 129 IAARVFSQLQNPPARKPESFQQFSERELEVLGLIGQGKNNREIAQALHLTEGTVKNHVTR 188

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              +L   +R Q      R 
Sbjct: 189 ILAQLGLRDRTQLALWTHRH 208


>gi|297581538|ref|ZP_06943461.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297534376|gb|EFH73214.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 209

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0205]
          Length = 243

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  ++     T RE S LQL  +G  ++EIA +L  S+  V  Y+     K    +R + 
Sbjct: 173 QPTAAVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTEL 232

Query: 225 IAKAIRFGYI 234
           +  A+  G +
Sbjct: 233 VRYALENGLV 242


>gi|310822190|ref|YP_003954548.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395262|gb|ADO72721.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
          Length = 236

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 7/140 (5%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
              +L VR+       A            +GY+      +      I             
Sbjct: 90  RKRRLEVRMLMLSAVSAPDIISQCFDEGASGYLFRAGLGVGAVATAIHGLIRGERLFPVQ 149

Query: 160 FLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            L    +    A         LT+RE   L     G  + +IA  L ++  TV +++   
Sbjct: 150 LLRNDFEHPPVATQPASVLNALTQREREVLGYVAGGADNLKIAAHLQIAERTVKSHVTQL 209

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL A NR Q   +A   G
Sbjct: 210 YRKLGAENRTQLALRACHLG 229


>gi|291299597|ref|YP_003510875.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568817|gb|ADD41782.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 135

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R L++RET  L     G ++ EI  +L ++  TV  +      KL A +R  A+A+A R 
Sbjct: 71  RGLSQRETQVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRT 130

Query: 232 GYI 234
           G +
Sbjct: 131 GIL 133


>gi|239627726|ref|ZP_04670757.1| two-component protein Kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517872|gb|EEQ57738.1| two-component protein Kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 209

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           V            + A  +LT RE   ++L   G  + EIA  L L+  TV   +     
Sbjct: 129 VFEGMRRQMALPGAKADLDLTPREMDIMRLVAQGMDNREIAAGLFLAEGTVRNNISRLLE 188

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   +R Q    A++   
Sbjct: 189 KLKLKDRTQLAVFAVKNNL 207


>gi|115375050|ref|ZP_01462320.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367978|gb|EAU66943.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 7/140 (5%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
              +L VR+       A            +GY+      +      I             
Sbjct: 83  RKRRLEVRMLMLSAVSAPDIISQCFDEGASGYLFRAGLGVGAVATAIHGLIRGERLFPVQ 142

Query: 160 FLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            L    +    A         LT+RE   L     G  + +IA  L ++  TV +++   
Sbjct: 143 LLRNDFEHPPVATQPASVLNALTQREREVLGYVAGGADNLKIAAHLQIAERTVKSHVTQL 202

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL A NR Q   +A   G
Sbjct: 203 YRKLGAENRTQLALRACHLG 222


>gi|87199633|ref|YP_496890.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135314|gb|ABD26056.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 218

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 12/130 (9%)

Query: 116 AGIAFPV-----RLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQVITDFLELFKK 166
            G+ FPV         H     +            + + +++A    +Q + +     +K
Sbjct: 73  HGLDFPVIVLSGHGDIHSAVRAMKAGAVDFVEKPFSRDKLLDAIANAFQRVENGEAAREK 132

Query: 167 RSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             SA      LT RE   L+    GY ++ IA  LG+S  TV  Y  +   KL   +   
Sbjct: 133 AVSAQTLVARLTSREQEVLEGLACGYPNKTIAYDLGISPRTVEVYRANIMTKLKVPSFAD 192

Query: 224 AIAKAIRFGY 233
           A+  A   G 
Sbjct: 193 ALRIAFTAGL 202


>gi|29833613|ref|NP_828247.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610737|dbj|BAC74782.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 220

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT+RE   L+L   G ++ EIA +L +   TV +++ +   KL A +R Q
Sbjct: 147 AARAVMERAALTDREGEVLRLMARGLSNAEIAGQLVVGTETVKSHVSAVLAKLGARDRTQ 206

Query: 224 AIAKAIRFGYI 234
           A+  A   G++
Sbjct: 207 AVIAAYESGFV 217


>gi|258650664|ref|YP_003199820.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553889|gb|ACV76831.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 191

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                         LT RE   ++L  +G++S EIA+ L +S  TV+ +  +   KL   
Sbjct: 115 LRRSRNGDRIPTSILTPREEEIVKLIAEGHSSREIADTLVISAKTVDRHRANIMQKLGMH 174

Query: 220 NRIQAIAKAIRFGYI 234
           +R+     AIR G +
Sbjct: 175 DRLDLTRFAIRVGLV 189


>gi|302552462|ref|ZP_07304804.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470080|gb|EFL33173.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIA-FPVRLGFHKN---GYVIFTSEFLMLANEV 145
            +  + T I       +         AG + F V+    +    G     +   ++A  +
Sbjct: 70  TAAGDRTRILIVTTFDLDEYAYAGLRAGASGFLVKDAQPEELLSGIRAVATGDAVVAPSL 129

Query: 146 IIEA--HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                     +       E   +      +LT+RE   L + G G+T+ EIA +  L+  
Sbjct: 130 TRRLLDAYVHHLPTDSAAETPPQEDPRLASLTDREREILTVIGRGWTNTEIATRFHLAES 189

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  ++G    K  + +RIQA+  A     +
Sbjct: 190 TVKTHVGRILAKTGSRDRIQAVILAYDTKLV 220


>gi|254788088|ref|YP_003075517.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237687530|gb|ACR14794.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 303

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 10/133 (7%)

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
           ++   Q+ +R      P  G+   +         V   +                  ++I
Sbjct: 178 LQKQLQVEIRTWLAHGPNIGMGVNLTTPNRSLRLVYLGNSAPNE----------ILIRLI 227

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            +       R      LT RE+  L     G T+ EI + LG S  T+N +L     KL+
Sbjct: 228 DNDKPDEASRLREHLPLTTRESEVLLWLARGKTNREIGQILGTSPRTINKHLEQIYKKLE 287

Query: 218 AVNRIQAIAKAIR 230
             NR  A AKA++
Sbjct: 288 VENRTTAAAKALQ 300


>gi|160914272|ref|ZP_02076493.1| hypothetical protein EUBDOL_00282 [Eubacterium dolichum DSM 3991]
 gi|158433899|gb|EDP12188.1| hypothetical protein EUBDOL_00282 [Eubacterium dolichum DSM 3991]
          Length = 64

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           T+RE+   +L    Y+++EIA+++ +S  TV  ++ +  +KL    R QA+ 
Sbjct: 2   TQRESEVFKLLIANYSTKEIAQRMNISDKTVRNHISNVMLKLGVKGRAQAVV 53


>gi|108797883|ref|YP_638080.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866977|ref|YP_936929.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS]
 gi|108768302|gb|ABG07024.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS]
 gi|119693066|gb|ABL90139.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS]
          Length = 526

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT RE   L L   G T++EIA +L +S  T   ++     K+   NR+ A 
Sbjct: 454 GPGPRQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAAS 513

Query: 226 AKAIRFGYI 234
             A+  G +
Sbjct: 514 LYALEHGLL 522


>gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 303

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           T+RE+        G T+ EIA+ + +S  TVN +L     KL   NR  A A AI+
Sbjct: 241 TKRESDVFLWLAKGKTNREIAQIIDISPRTVNKHLEQLFKKLAVDNRTTAAAMAIQ 296


>gi|29828005|ref|NP_822639.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605107|dbj|BAC69174.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 221

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   + L G G +++EI  +L +S  T   ++    VKL A +R Q +  A   G
Sbjct: 154 GLTEREREVMALVGFGLSNDEIGRRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESG 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|56696391|ref|YP_166748.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56678128|gb|AAV94794.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 234

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   +    LT ++   LQL  +G  +++IA  L ++  TV A++ +   KL   +R QA
Sbjct: 155 EDALARLSALTNQQARILQLVCEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQA 214

Query: 225 IAKAIR 230
           +  A +
Sbjct: 215 VLIAKK 220


>gi|120598493|ref|YP_963067.1| response regulator receiver protein [Shewanella sp. W3-18-1]
 gi|120558586|gb|ABM24513.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1]
          Length = 211

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 35/83 (42%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           I+  H      + + +            LT RE   LQ    G T+ +IA +L +S  T+
Sbjct: 120 ILRGHRVIPMQLINGVNDDFGLFEDTEPLTIREREVLQALLSGSTNLDIANQLFVSESTI 179

Query: 206 NAYLGSATVKLDAVNRIQAIAKA 228
             +L     K+   +R QAIA A
Sbjct: 180 KTHLYRVFRKIGVSSRGQAIAWA 202


>gi|146293428|ref|YP_001183852.1| response regulator receiver protein [Shewanella putrefaciens CN-32]
 gi|145565118|gb|ABP76053.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           CN-32]
 gi|319426731|gb|ADV54805.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           200]
          Length = 211

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 35/83 (42%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           I+  H      + + +            LT RE   LQ    G T+ +IA +L +S  T+
Sbjct: 120 ILRGHRVIPMQLINGVNDDFGLFEDTEPLTIREREVLQALLSGSTNLDIANQLFVSESTI 179

Query: 206 NAYLGSATVKLDAVNRIQAIAKA 228
             +L     K+   +R QAIA A
Sbjct: 180 KTHLYRVFRKIGVSSRGQAIAWA 202


>gi|99077943|ref|YP_611202.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99034886|gb|ABF61940.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040]
          Length = 266

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 77/234 (32%), Gaps = 12/234 (5%)

Query: 11  SSSLQELSPRLHL-IQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           + +L          ++             +++          + +      +  +I    
Sbjct: 14  APTLDAKYKVFSGFMEAEYGYVGVNYGLFLDTRSLHAIHNNHVSKRSGLPNEWREIYQRN 73

Query: 69  IETYGDDFLFHFNSGLLPI----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                D  +        PI     ++++    + E+  ++   +       +G+  P++ 
Sbjct: 74  NYALDDYGMRMGALTRKPILQSSFYRALDANELPENFARVVGGVR--NFVSSGVVIPLQA 131

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSC 181
              +    +F     +L ++   E      Q + ++L +    S        L+E     
Sbjct: 132 NGMRGIIGLFDPSGDILKHDARFERDRTTIQTLANYLHMCSDWSDDIIVQMGLSEMNLKV 191

Query: 182 LQLAGDGYTSEEIAEKLGL-SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G   +EI  ++   +  T+++++      L   N ++ + +A + G +
Sbjct: 192 LRLKAQGLRMKEILYEIQRDNPKTIHSHMQRVRRALGTRNDMETVQRAAKLGLL 245


>gi|307311784|ref|ZP_07591423.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306899525|gb|EFN30155.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 184

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173
            G    G  +   +           +  A  + +   L+L + R                
Sbjct: 60  TGRGDIGITVRAMKAGAHDFLEKPASSAAVLEAVERALQLCETRRKDHDRAQALHTLIAS 119

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE+    L   G  ++++A +L  S  TV A+      KL   +  + ++ A R G 
Sbjct: 120 LTPRESQVFDLIVRGKRNKQVAFELNTSERTVKAHRHKVMEKLGVRSLAEVVSMAERLGL 179

Query: 234 I 234
           +
Sbjct: 180 L 180


>gi|256824283|ref|YP_003148243.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687676|gb|ACV05478.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 223

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 13/149 (8%)

Query: 99  ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY 154
                L   L G  +    +              +                + +      
Sbjct: 74  PDGAALIQDLRGLGVATPMLVLTAHDDGDDVLQAVEAGASGYLLKDAPPTSLRDGVARAA 133

Query: 155 Q-------VITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                        L    +   + AA  +T+RE   L+    G T+ ++A +LG+   TV
Sbjct: 134 AGETVLAPAAAAHLVTGARATTAEAAPRVTDRELQVLRGVARGQTNRQVARELGIGEATV 193

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +L      L   NR  A+ +A   G +
Sbjct: 194 KTHLVHVFTTLGVTNRTAAVGRARELGLL 222


>gi|134099697|ref|YP_001105358.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291008299|ref|ZP_06566272.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912320|emb|CAM02433.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 946

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 33/102 (32%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
                 +G       +  L             +         + R      L+ RE    
Sbjct: 842 HAPGGPDGMGELADRYAELGATRDAARCRHLLRSHGTTTPSRRGRRGYGNELSPREQDVA 901

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +L   G T+ EIAE L LS  TV  ++     KL A +R + 
Sbjct: 902 RLLAGGRTNREIAEALFLSRRTVEQHVARVLRKLGAASRTEL 943


>gi|319791973|ref|YP_004153613.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594436|gb|ADU35502.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 214

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +  A  LT R+  CL+  G G +++EIA  L L   TVN ++ SA   L   +R  
Sbjct: 132 DLGANPNAIRLTNRQCQCLEFVGAGRSTKEIARLLSLHPGTVNYHIDSAMEALGVKSRAH 191

Query: 224 AIAKAIRFGYI 234
           A+ KA++ G +
Sbjct: 192 AVQKALQLGLL 202


>gi|288800041|ref|ZP_06405500.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288333289|gb|EFC71768.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 200

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L L   G+ ++EIA  L +S+ TV  +  +   KL   +       A+  GY
Sbjct: 135 LTDREIEVLSLLVQGHINKEIATILHISLTTVITHRKNIVEKLGMKSVSALTIYAVTHGY 194

Query: 234 I 234
           +
Sbjct: 195 V 195


>gi|289805193|ref|ZP_06535822.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 122

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
             +R G      +      +  ++E  + A      +     +  ++ +  A  LT +E 
Sbjct: 4   IFIRRGHRIIAGISLMR-DIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKER 62

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             + +  +G +++ IA +L +S+ TV  +L +   K + +NR + +++
Sbjct: 63  EIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 110


>gi|333023628|ref|ZP_08451692.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332743480|gb|EGJ73921.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 290

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              G  +      +    +  E  G C ++     +    R + A  LT RE   L +  
Sbjct: 184 RDTGAHLRGLADRLTDPALRAELLGVCARL--AAADAGPPRDTQAPPLTPREVEVLVIVA 241

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G T+  +A +LGL   TV AYL +A  KL A  R +A+A A R G +
Sbjct: 242 EGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGVV 289


>gi|328885153|emb|CCA58392.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 218

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +  +    LT RE   + L   G +++EIA+++ +   TV A++ +   +L   NR+Q
Sbjct: 145 AARARTRLEPLTGREREVVALLAAGLSNQEIADRMYVVEGTVKAHVSAVLARLGLRNRVQ 204

Query: 224 AIAKAIRFGYI 234
               A   G +
Sbjct: 205 LAVLAYEAGLV 215


>gi|311894159|dbj|BAJ26567.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 233

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 32/64 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA   LTERE   ++L   G T+ EI   L +S  TV  +L +   KL   NR+   A A
Sbjct: 164 SAVEPLTEREWEIVELVAQGRTNAEIGAGLFISAGTVKTHLANVQGKLGTRNRVAIAAWA 223

Query: 229 IRFG 232
            R G
Sbjct: 224 WRTG 227


>gi|298244807|ref|ZP_06968613.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297552288|gb|EFH86153.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1076

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query: 158  TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                 L ++  + A+ L+ RE   L L G G +++EIA +L +++ TV  ++ +    L 
Sbjct: 1000 DQLALLRERMRAGAQILSPREREVLLLLGTGASNQEIANQLIITLGTVKRHVNTILAALQ 1059

Query: 218  AVNRIQAIAKAIRFGYI 234
              NR+QA+A+A     +
Sbjct: 1060 VSNRMQAVARARELALL 1076


>gi|237665880|ref|ZP_04525868.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237658827|gb|EEP56379.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 227

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L + E   +   G G +++EIA+ L LS  TV  YL     KL+  +R Q    A+  
Sbjct: 155 KSLGKTEWKVIVQIGRGLSNKEIAKVLFLSEGTVRNYLSQILNKLELRDRTQLAIWAVEN 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|229818904|ref|YP_002880430.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564817|gb|ACQ78668.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 218

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSS-----AARNLT 175
           L     G+++  +   +L   +   A         V    L  F  ++          LT
Sbjct: 97  LRAGARGFLLKDAGPELLVRAIHAAAEGDALIAPNVTRRLLATFADQAPAVPVQPIDPLT 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            RE   L L   G T+ EIA +L + + TV  ++ S   KL A NR++    A 
Sbjct: 157 GREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNRVEIAMWAY 210


>gi|256374750|ref|YP_003098410.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255919053|gb|ACU34564.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 38/84 (45%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                 + D     +       +L+ERE   L L G G ++ EI   L LS  TV  Y+ 
Sbjct: 131 ARVLSAVADGERAAEPARRLLSSLSEREREVLVLIGQGMSNAEIGGTLHLSEATVKGYVS 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   K+ AVNR+QA   A R G I
Sbjct: 191 SVLGKIGAVNRVQAALVAYRGGLI 214


>gi|182415052|ref|YP_001820118.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842266|gb|ACB76518.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 274

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAE 196
               N  +  +     Q++  F++  +  ++     +L++RE   + L G+G  + EIA 
Sbjct: 156 RRARNGQLFVSERVATQMLNRFVDGTEDGAADSPVSSLSDRELEIVNLIGEGLPTREIAA 215

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           KL LS+ TV  +      KL+  N  Q +   +R
Sbjct: 216 KLFLSIKTVETHRVHIKRKLNLANATQLVQFCVR 249


>gi|167645498|ref|YP_001683161.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347928|gb|ABZ70663.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 137

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 33/65 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A+  LT +E   L+    G +++EIA  LGLS +TV  ++     KL    R QAI KA 
Sbjct: 72  ASLGLTGQEVKVLERLAAGQSNKEIAAALGLSPNTVKTHIAHLFEKLAVSRRTQAIGKAR 131

Query: 230 RFGYI 234
               I
Sbjct: 132 DLHLI 136


>gi|254361295|ref|ZP_04977438.1| possible bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica PHL213]
 gi|153092791|gb|EDN73834.1| possible bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica PHL213]
          Length = 583

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L L   G ++E+IA +L +S  TV+ ++ +   K    +R      AI   
Sbjct: 84  GLSKREIELLTLISSGLSNEDIANELCISKRTVDKHIENIFAKTHTKSRTLLAVFAITEH 143

Query: 233 YIC 235
            IC
Sbjct: 144 LIC 146


>gi|145300654|ref|YP_001143495.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853426|gb|ABO91747.1| transcriptional regulator, LuxR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 273

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 74/249 (29%), Gaps = 37/249 (14%)

Query: 13  SLQELSPRLHLIQNRIKARNFAL---------YTINSALDFPRRQQLICELHNYD-LDSG 62
           +   L+  +  + N + +  FA             + AL     Q+ +    N     + 
Sbjct: 6   TADALTRSMTEVVNALHSSAFAGALVRLIQQQVAFDCALLLGVGQRPVYLYDNLSHQRAL 65

Query: 63  DIPNILIETY-GDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAF 120
                L   +  D F+     GL   +W   Q     ++   +       G     G+  
Sbjct: 66  LFDRYLTSHFSQDPFMQALEQGLPAGVWTLAQVSQGRLDPEYRHHFYQATGWQEEVGLIL 125

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSA--- 170
           PVR G     ++    +   L+ + +          H  C Q       L  + ++    
Sbjct: 126 PVRDGLTLMLFLGRLDKRSTLSRDELARLEGVFPLVHSLCRQQWQQSQPLLAQSTAQPDS 185

Query: 171 ---------------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                             LT RE    +L   G  +E IA  LG+   TV  +      K
Sbjct: 186 TSLKSAVEQAMASVGGDRLTRRERQVAELLLQGLDTEAIAAALGIGNGTVKNHRKHLYGK 245

Query: 216 LDAVNRIQA 224
           L   +R + 
Sbjct: 246 LRLGSRAEL 254


>gi|326943150|gb|AEA19046.1| two-component response regulator YocG [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 200

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 36/61 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L LA +G T+ EIA+ L LS  TV  Y+     KLDA NRI+AI  A   G
Sbjct: 139 PLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKG 198

Query: 233 Y 233
           +
Sbjct: 199 W 199


>gi|237880797|gb|ACR33055.1| response regulator [Actinoplanes garbadinensis]
          Length = 231

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L++RE S L+L G G T+ EI+ +L LS  TV  ++     KL   NR+QA   A   
Sbjct: 162 KQLSDREQSILRLLGAGLTNAEISRQLFLSAATVKEHVSVILSKLGVANRVQAAVLAYAS 221

Query: 232 GY 233
           G 
Sbjct: 222 GL 223


>gi|256423541|ref|YP_003124194.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038449|gb|ACU61993.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 208

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +T RE   L+LA +G T  +IAEKL +S +TV ++  +   K +  +   AI  A ++
Sbjct: 146 PKMTRREKEILKLAAEGLTIAQIAEKLFISPYTVESHRKNLMDKFEVNSVAAAIKLAGQY 205

Query: 232 GYI 234
           G++
Sbjct: 206 GFL 208


>gi|218513661|ref|ZP_03510501.1| two-component response regulator protein [Rhizobium etli 8C-3]
          Length = 115

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
                   H     V    +   ++    +  LT RE   L L   G ++ EIAE LG+S
Sbjct: 12  DRNRRGWRHLFLSGVFDALMR--ERAEEGSDPLTPREHDTLGLIVAGRSNREIAEVLGIS 69

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             T   +  +   KL        I  A+  G 
Sbjct: 70  AATAETHRKNLKKKLGIATTAGLIRYALDHGI 101


>gi|220935078|ref|YP_002513977.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996388|gb|ACL72990.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 220

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L K +++    L+ RE   L +   G T + IA  L +S  TV+ Y      KL   N +
Sbjct: 141 LAKGQANPFDELSGRERQILLMILQGQTPQAIATALNISPKTVSTYKCRVMGKLGISNDM 200

Query: 223 QAIAKAIRFGYI 234
           Q +  A + G I
Sbjct: 201 QLVTLAAQHGLI 212


>gi|209528286|ref|ZP_03276747.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209491272|gb|EDZ91666.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 203

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 12/138 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF----LMLANEVIIEAHGACYQVITDF 160
            +R        + I    +         + T            E ++    +  +     
Sbjct: 62  LIRENAQFGWISVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQTERL 121

Query: 161 LELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
               K    A++         LT  E   ++L   G  + EI++ + +S  T+ +++ + 
Sbjct: 122 TRYRKSVIEASQKIRVREGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNM 181

Query: 213 TVKLDAVNRIQAIAKAIR 230
             K    NR Q    A+ 
Sbjct: 182 LGKTGLHNRTQLARWALE 199


>gi|325673773|ref|ZP_08153464.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325555794|gb|EGD25465.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 211

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 5/147 (3%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       S   +  +L   +     +              +       L  ++      
Sbjct: 53  LDVRLPDGSGIDVCRQLRADMPDLRCLMITAFPDERAVREAVAAGAKGYLVKDIRGMQLV 112

Query: 152 ACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
              + +    E+    +   +      LT +E   L L G+G T+ +IA ++ L+  TV 
Sbjct: 113 QAVREVGAGHEIPFPVTPTRQPGAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVK 172

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            Y+     KL    R QA   A R G 
Sbjct: 173 NYVSRLLEKLGVERRAQAAVLAARSGL 199


>gi|283782991|ref|YP_003373745.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
 gi|298253351|ref|ZP_06977143.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
 gi|283441595|gb|ADB14061.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
 gi|297532746|gb|EFH71632.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
          Length = 217

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                L+ +E+  ++L   GY+S+EIA++L + V TVN +L     KL   +R+QA+A
Sbjct: 151 PKTSVLSPQESEIMRLCKQGYSSKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALA 208


>gi|320008841|gb|ADW03691.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 371

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RE   ++L   G ++++IA    +S  TV  ++     KL + +R +AIA+
Sbjct: 298 QLSSREAEVMELISSGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIAR 352


>gi|256790252|ref|ZP_05528683.1| LuxR family two-component response regulator [Streptomyces lividans
           TK24]
 gi|289774125|ref|ZP_06533503.1| LuxR family two-component system response regulator [Streptomyces
           lividans TK24]
 gi|289704324|gb|EFD71753.1| LuxR family two-component system response regulator [Streptomyces
           lividans TK24]
          Length = 233

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLA 185
            G  + ++   +   + +++A     +++       ++ +        LT+RE   L+L 
Sbjct: 119 QGSDLVSAVRTVARGQSLLDASAT-TKLMARLRGGGQQPAEEPEMLPGLTDREREILELI 177

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G+G T+ +I ++L L+  TV  ++     KL    RIQA   A + 
Sbjct: 178 GEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 223


>gi|254785114|ref|YP_003072542.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684126|gb|ACR11390.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 220

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +    +           LT+RE   L+L  DG T+ +I+E L +S HTV ++L 
Sbjct: 135 RLLHTFLDKNRKAPSNIKRPNVKLTKREKQILKLIKDGATNADISEALSVSEHTVKSHLY 194

Query: 211 SATVKLDAVNRIQA 224
           +   K+   NR++A
Sbjct: 195 NVYKKIGVRNRLEA 208


>gi|255036722|ref|YP_003087343.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254949478|gb|ACT94178.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 219

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   LQL  DG ++ EI +KL +SV TV  +      K    +   A+A A +  
Sbjct: 157 ALSSREKEVLQLICDGLSTTEIGDKLFISVRTVEGHRLRVLEKTGTKSTAAAVAFAYKNQ 216

Query: 233 YI 234
            +
Sbjct: 217 LL 218


>gi|86740955|ref|YP_481355.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86567817|gb|ABD11626.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 224

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 15/158 (9%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----------- 136
               +       +   +   L         +              I              
Sbjct: 64  DVAVLDARLEDGNGIDVCRDLRSAHPEIGCLILTSYDDDDALFAAIMAGAAGYLLKQIRG 123

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
             L+ A   I          +T  +    +   A       L ERE   L L  +G T+ 
Sbjct: 124 TDLVGAIRTIAAGRSLLDPAVTQRVLTRLREGPAEDRKLATLGERERQILVLIAEGLTNR 183

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +IA ++ LS  TV  Y+ +   KL+  +R QA   A R
Sbjct: 184 QIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 221


>gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 242

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F  +    + +       ++TD   L K+ S    + T RE S LQL  +G  ++EI
Sbjct: 142 AARFADIDVSKMAKQITEIKSMLTDQNPLNKENSIDIPSFTPREASVLQLVAEGLMNKEI 201

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+    +K    +R + +  A+    +
Sbjct: 202 ARQLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHLV 241


>gi|110633153|ref|YP_673361.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284137|gb|ABG62196.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 82

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NL+ RE   ++L   G T++EIA+KL +S  TV  Y+     KL A NR++ +  A   G
Sbjct: 6   NLSVREDQIVRLLLLGRTNKEIAQKLKISEKTVKHYMSLLMQKLQARNRVEVVLAAQELG 65


>gi|239942882|ref|ZP_04694819.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239989342|ref|ZP_04710006.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 216

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +     LT+RE   L L G G ++ EIA +L LS  TV  ++ S   KL  VNR+Q
Sbjct: 142 DSGAADRTGALTDREGQVLALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQ 201

Query: 224 AIAKAIRFGYI 234
           A   A R G I
Sbjct: 202 AAVLADRAGLI 212


>gi|239831167|ref|ZP_04679496.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823434|gb|EEQ95002.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 231

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   +  R LT ++T  L +  +G  +++IA +LG+S  TV A++ +   KL   +R QA
Sbjct: 157 EALIARLRTLTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQA 216

Query: 225 IAKAIRFG 232
           +    R G
Sbjct: 217 VILLSRIG 224


>gi|229085929|ref|ZP_04218153.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228697365|gb|EEL50126.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 189

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+ E   LQL   GY  +EIA  L  S  T++ ++     KLD  + ++A+ K I+ 
Sbjct: 120 EELTDSEKQILQLLCGGYKRKEIATMLYASERTISNHIQHIFNKLDVSSALEAVTKGIQL 179

Query: 232 GYI 234
           GYI
Sbjct: 180 GYI 182


>gi|171915529|ref|ZP_02930999.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 234

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 99  ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT 158
           +   ++   L  G     G            G +   SE     ++ I         +I 
Sbjct: 103 DDPAKVFAALRAGA---HGYLLKGSKPEDIVGGIRSASEGGAPLSQEIARL------LIQ 153

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            F E  K        LT RET  L+    G   +E+A +L LS  TV  YL     KL  
Sbjct: 154 SFQEPPKTEKPPIPGLTPRETQILERLAQGMVPKEVAFELSLSYETVRDYLKGVYQKLHV 213

Query: 219 VNRIQAIAKAIRF 231
            +R +A+ K ++ 
Sbjct: 214 RSRTEAVIKFLQH 226


>gi|167761739|ref|ZP_02433866.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC
           43183]
 gi|167700375|gb|EDS16954.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC
           43183]
          Length = 206

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ RE   L L   G  ++EIA+KL +S+ TV  +  +   KL   +       A+ 
Sbjct: 138 AHELSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 197

Query: 231 FGYI 234
            GYI
Sbjct: 198 HGYI 201


>gi|16119495|ref|NP_396201.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15162039|gb|AAK90642.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 210

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 2/140 (1%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
           E   E      V +         I+  V  G          +E ++ A + +        
Sbjct: 71  ELFKERQLSARVLMLSMHDSREYISTSVMYGAAGYILKDVATEEIVAAIDTVAAGGTYFS 130

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             + D L   +  +   + LT RE   L L   G ++ + A  L ++  T+  +  +   
Sbjct: 131 SGVRDVL--MESSTGRLKELTTREQDVLLLIARGKSNRDAALALDIAERTMETHRKNIKR 188

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KLD       I  AI  G I
Sbjct: 189 KLDIATTAGLIRYAIDHGLI 208


>gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. NATL2A]
 gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. NATL2A]
          Length = 242

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +   + F       + +       +++   +   ++  +  N T RE S LQL  +G  
Sbjct: 138 LLTEAARFANADVGQMAKQITEIKSMLSHGDKNHSRKDDSIPNFTPREASVLQLVAEGLM 197

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++EIA +L  S+  V  Y+    +K    +R + +  A+    +
Sbjct: 198 NKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|312196401|ref|YP_004016462.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227737|gb|ADP80592.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 251

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
                        +A    + A     ++ +        R+     LT RET  L     
Sbjct: 145 DAPLETLAEAVRAVARGETVLAPPVAARLASRL------RAPDPVTLTRRETEVLAAVAR 198

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T+ EI  +L +   TV  +L     KL   +R  A+  A+  G +
Sbjct: 199 GRTNAEIGRELFIGEATVKTHLLRVFAKLQVDDRTHAVTAALERGLL 245


>gi|297538580|ref|YP_003674349.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257927|gb|ADI29772.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 212

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 149 AHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            H +  +++ + L      RS    +LTERE   L+   +G  ++ IA  LG+S  TV  
Sbjct: 128 LHESLTEILKNALISPSLSRSEEEVSLTEREREILECLANGLNNKTIARSLGISDTTVKV 187

Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230
           ++     KL   +R++A   A R
Sbjct: 188 HIKHLLSKLKLTSRLEAAVWAHR 210


>gi|260459597|ref|ZP_05807851.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034399|gb|EEW35656.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 222

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARNLTERETS 180
           VRLG        F  +   +  E I+  AHG       D  ++          LT RE  
Sbjct: 109 VRLGAQGY---CFQFDDPHIIFETILAVAHGRICIPYIDINKVNDT---PLAQLTVRERE 162

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L +  DG+T+ +IA + G+S +TV  +L +   KLD  NR  A+A 
Sbjct: 163 LLAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVAL 209


>gi|227549492|ref|ZP_03979541.1| possible transcriptional regulator [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078435|gb|EEI16398.1| possible transcriptional regulator [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 240

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L+      T+ EIA  L +   TV  Y+     KL   +R+     
Sbjct: 165 APPVEPLTPRELEVLERVALAETNAEIAAHLHIGAATVKTYVSRLIAKLGVRDRVGLAVW 224

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 225 AHTSGIV 231


>gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 244

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            + T RE S LQL  +G  ++EIA +L  S+  V  Y+     K    +R + +  A+  
Sbjct: 181 HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFAKTGTASRTELVRYALEH 240

Query: 232 GYI 234
           G +
Sbjct: 241 GLV 243


>gi|78485726|ref|YP_391651.1| two component LuxR family transcriptional regulator [Thiomicrospira
           crunogena XCL-2]
 gi|78364012|gb|ABB41977.1| two component transcriptional regulator, LuxR family
           [Thiomicrospira crunogena XCL-2]
          Length = 232

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            + S  + L+ RE   ++L  +GY +++IA+ L +S  TV+ +  +   KL      + +
Sbjct: 156 DKPSRPKKLSVREKQVIKLVAEGYKTKDIADMLEISDRTVSKHRENIMTKLGMTASAELV 215

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 216 NYASHIGLL 224


>gi|311696074|gb|ADP98947.1| two component transcriptional regulator, LuxR family [marine
           bacterium HP15]
          Length = 257

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +LT R+   L+    G ++++IA  L ++  TV A++ +   KL   NR+QAI  A
Sbjct: 191 SLTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLGVHNRVQAILSA 246


>gi|296100407|ref|YP_003610553.1| DNA-binding transcriptional activator UhpA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295054866|gb|ADF59604.1| DNA-binding transcriptional activator UhpA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 197

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|255534826|ref|YP_003095197.1| LuxR family transcriptional regulator protein [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341022|gb|ACU07135.1| LuxR family transcriptional regulator protein [Flavobacteriaceae
           bacterium 3519-10]
          Length = 280

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RET  L L   GY+  EIA+ + +S HTV ++  +   K+   N  + I+KAI   
Sbjct: 219 KLTQRETEILSLIARGYSGSEIAKNICVSEHTVKSHRRNIIAKMRVRNTKELISKAIEMA 278

Query: 233 YI 234
            I
Sbjct: 279 VI 280


>gi|302559542|ref|ZP_07311884.1| erythropoiesis-stimulating protein [Streptomyces griseoflavus
           Tu4000]
 gi|302477160|gb|EFL40253.1| erythropoiesis-stimulating protein [Streptomyces griseoflavus
           Tu4000]
          Length = 333

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 13/225 (5%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           K  S+ ++  R+  + +       A           + +Q +      D         L 
Sbjct: 120 KLRSMDQIQSRIEHLADTCTTEIAAFV-----PGGGQSEQHLEAARPLDRAVTGRGVRLR 174

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
             + D       +      +     E   +      +     +        P+       
Sbjct: 175 YVFLDS----ARNCQGTRAYAEWLTERGGQVRTAPRLPSRMLVYDRVTAILPMDPAAADQ 230

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G ++      + A   + +        + + +             +  E + L L G+G 
Sbjct: 231 GALVLHGTGAVTALMTLFDQTWQQSCPLGETVPTRTGDDRP----SPPEQAVLGLLGEGM 286

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T + +A +LG+SV TV         +L A +R +A   A   G++
Sbjct: 287 TDDAMARQLGVSVRTVRRITADLMTRLGARSRFEAGVLAHSKGWV 331


>gi|258620431|ref|ZP_05715469.1| Transcriptional regulator [Vibrio mimicus VM573]
 gi|258625644|ref|ZP_05720523.1| Transcriptional regulator [Vibrio mimicus VM603]
 gi|262170370|ref|ZP_06038048.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
 gi|258581882|gb|EEW06752.1| Transcriptional regulator [Vibrio mimicus VM603]
 gi|258587310|gb|EEW12021.1| Transcriptional regulator [Vibrio mimicus VM573]
 gi|261891446|gb|EEY37432.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
          Length = 209

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|258654190|ref|YP_003203346.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258557415|gb|ACV80357.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 218

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE     LA  G ++ EIA +  LS  TV  ++     KL   +R+Q +  A   G
Sbjct: 157 ELTQREREIFALAARGLSNAEIAAREFLSEATVKTHISRILGKLALRDRVQLVVFAYEHG 216

Query: 233 Y 233
            
Sbjct: 217 L 217


>gi|300773710|ref|ZP_07083579.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759881|gb|EFK56708.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 215

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   +QL  DG+ S+ I+EKL +S +TV  +  +   KL+  N +  +  AI++ 
Sbjct: 154 RLTNREIQIIQLICDGHNSKVISEKLFISFNTVETHRKNIFQKLNIKNSLGLLRLAIQYD 213

Query: 233 YI 234
            I
Sbjct: 214 LI 215


>gi|239982955|ref|ZP_04705479.1| LuxR family two-component response regulator [Streptomyces albus
           J1074]
 gi|291454789|ref|ZP_06594179.1| luxR family two-component system response regulator [Streptomyces
           albus J1074]
 gi|291357738|gb|EFE84640.1| luxR family two-component system response regulator [Streptomyces
           albus J1074]
          Length = 237

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 41/110 (37%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +      +      S   ML                 D      ++ S    L+ RE   
Sbjct: 123 INGADLVSAVRTVASGTSMLDPRTTARVMARLRGGPADSQPAEPEQPSVLDRLSPREREI 182

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L+L G+G T+ EIAE+L L+  TV   + +   KL    RIQA   A R 
Sbjct: 183 LELIGEGLTNREIAERLYLAEKTVKNRISAILSKLGVGRRIQAAMIAGRL 232


>gi|296138645|ref|YP_003645888.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026779|gb|ADG77549.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 223

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 3/123 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +          + +  +   A                     
Sbjct: 102 RAGARGYVTKTISGPELADAVRRVADGDAVFSPRL---AGFVLDSFTGRSPVPEPALDPE 158

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE L +SV TV  +  +   K    NR      A  
Sbjct: 159 LDSLTPRELEVLRLLARGYTYREIAEDLFISVKTVETHASNVLRKTQQSNRNALTRWAHT 218

Query: 231 FGY 233
              
Sbjct: 219 RHL 221


>gi|192361059|ref|YP_001981583.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus
           Ueda107]
 gi|190687224|gb|ACE84902.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus
           Ueda107]
          Length = 198

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 140 MLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
              ++ +I+A        +VI   L +          L ++E   L+LA +G T+ EI+ 
Sbjct: 103 DAPSDQLIDAIYKIMEGKRVIDGELAMM--ALGETDPLNDKERRALRLAAEGKTTAEISN 160

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L LS  TV  YL  A  KL+A NR+ A   A + G+I
Sbjct: 161 TLHLSEGTVRNYLSEAIAKLNAANRVDAARIARQKGWI 198


>gi|221134465|ref|ZP_03560770.1| two component LuxR family transcriptional regulator [Glaciecola sp.
           HTCC2999]
          Length = 214

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFL--ELFKKRSSAA 171
           P+     + G   F ++      E++   H           ++       +L    S+  
Sbjct: 88  PIPAKVMQMGAFGFITKNAEPD-EMVRAVHKVVAGQKYIAPEIAQQIAIGKLDLGDSNPF 146

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE     +   G    +IA+ L +S  T+N Y      KL+  + ++    A+R+
Sbjct: 147 DQLSDRELEITLMLVTGRRVPDIADSLNISPKTINTYRYRMFEKLEINSDVELTHLALRY 206

Query: 232 GYI 234
             I
Sbjct: 207 KLI 209


>gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 242

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 41/104 (39%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +   + F       + +       ++T       ++     + T RE S LQL  +G  
Sbjct: 138 LLAEAARFADTDVGQMAKQITEIKSMLTQNDSNSSRKDLVIPSFTPREASVLQLVAEGLM 197

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++EIA +L  S+  V  Y+    +K    +R + +  A+    +
Sbjct: 198 NKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|332704010|ref|ZP_08424098.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554159|gb|EGJ51203.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 210

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L++RE   L +   G T  EIA+ L LSV T++ Y      K+   N  +    AI+
Sbjct: 146 HEFLSDREYQVLCMIAQGKTVSEIADTLKLSVKTISTYRARILEKMKMKNNAELTYYAIQ 205

Query: 231 FGYI 234
            G +
Sbjct: 206 NGLV 209


>gi|328883488|emb|CCA56727.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L          LT RE   + L   G +++EIA  + +S  T   ++  A  KL A +R 
Sbjct: 144 LPTDTGEVLEGLTGREREAVVLVAHGLSNDEIAAHMVVSPLTAKTHVNRAMTKLRARDRA 203

Query: 223 QAIAKAIRFGYI 234
           Q +  A   G +
Sbjct: 204 QLVILAYESGLV 215


>gi|315919533|ref|ZP_07915773.1| transcriptional regulator [Bacteroides sp. D2]
 gi|313693408|gb|EFS30243.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 224

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           G ++  +    + + ++  AH        IT+ L +   +      LT  E   L+L   
Sbjct: 111 GMILKENSGEEIHSALMCTAHGERFLCHQITNLLIIGSDKPEIHSVLTVTEIDILKLIAH 170

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G + +EIA +   S+HT+  +  +   KL   N  +A    +R G I
Sbjct: 171 GKSVKEIALERTSSIHTIITHKKNIFRKLGVNNVYEATKYTLRAGLI 217


>gi|297154431|gb|ADI04143.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 213

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE+  L+L  +G ++ EI  +L +S  T+  Y+     KL   NR+QA       G
Sbjct: 151 ALTERESQVLRLVAEGMSNAEIGRELHMSEKTIKTYVSRVLAKLGCSNRVQAALLVRDAG 210


>gi|291436472|ref|ZP_06575862.1| LuxR-family transcriptional regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291339367|gb|EFE66323.1| LuxR-family transcriptional regulator [Streptomyces ghanaensis ATCC
           14672]
          Length = 178

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                +       L+ RE   L+      ++EEIA  L +SV+TV  +L SA  KL    
Sbjct: 105 ARHAHRPPPVVEELSGRERDVLRRLALMMSTEEIAADLYVSVNTVKTHLKSAYRKLSVSR 164

Query: 221 RIQAIAKAIRFGYI 234
           R +A+ +A   G +
Sbjct: 165 RNEAVRRARELGLL 178


>gi|254819425|ref|ZP_05224426.1| two-component system response regulator [Mycobacterium
           intracellulare ATCC 13950]
          Length = 218

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKK-RSSAARNLT 175
           L     G+V+  S    L   V   A            +V+T + +     R +A   LT
Sbjct: 97  LRAGAAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTSRVLTTYRKAAPGPRGAAIAELT 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L L G G ++ EIA KL +S  TV +++G    KLD  +R  AI  A   G +
Sbjct: 157 TRELDVLTLIGQGLSNTEIAGKLCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215


>gi|163732202|ref|ZP_02139648.1| DNA-binding response regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161394500|gb|EDQ18823.1| DNA-binding response regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 204

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +R L++RE   L     G +++EIA  L L   T+  ++ +   KLDA NR QA   A  
Sbjct: 141 SRKLSQRERQVLSGLCTGKSNKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARN 200

Query: 231 FGY 233
            G+
Sbjct: 201 AGF 203


>gi|161505853|ref|YP_001572965.1| hypothetical protein SARI_04030 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867200|gb|ABX23823.1| hypothetical protein SARI_04030 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 229

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A    +  +     ++    D+L   +  S   + L+ R+   L++   G ++++
Sbjct: 131 PRDSDAETFALALNTVSRGMMFLPGDWLNSTELASRDIKALSARQREILKMLAAGESNKQ 190

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 191 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 224


>gi|163802337|ref|ZP_02196231.1| putative response regulator [Vibrio sp. AND4]
 gi|159173866|gb|EDP58680.1| putative response regulator [Vibrio sp. AND4]
          Length = 211

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEE 193
            ++   +        + I  + E  +  +  A        LT+RE    +L   G ++ +
Sbjct: 113 AVSQGDVWFPRPILNKAIYHYQEGNEDPAITADYLSTKFLLTKREREICRLMLQGLSNTQ 172

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           IA +  +S++T+  +  +   KL+  +R + +A A +
Sbjct: 173 IARQSNVSINTIKTHASNVLHKLNVHSRYELMAMARK 209


>gi|111224125|ref|YP_714919.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111151657|emb|CAJ63376.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 270

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +  S    LTERE   L+L     ++ EIA +L L+  TV  ++ +   KL   +R+QA+
Sbjct: 197 RPRSGLAELTEREAVVLRLVALALSNAEIATELVLTEATVKTHVSAVLRKLGLRDRVQAV 256

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 257 VFAYDHGLV 265


>gi|329941697|ref|ZP_08290962.1| LuxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299414|gb|EGG43314.1| LuxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V      L  +    + A     Q         ++   A   LT+RE   L L G+G T+
Sbjct: 129 VARGQSLLDPSATTRLMARLRGGQA-------KEEEPEALPGLTDREREILALIGEGLTN 181

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +I ++L L+  TV  ++     KL    RIQA   A + 
Sbjct: 182 RQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 221


>gi|229185568|ref|ZP_04312748.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|228597963|gb|EEK55603.1| Response regulator [Bacillus cereus BGSC 6E1]
          Length = 566

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+   +G   + IA KL LS  T+  Y  +   KL   NR +AI  A    
Sbjct: 505 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTEN 564

Query: 233 YI 234
            +
Sbjct: 565 IL 566


>gi|225865300|ref|YP_002750678.1| response regulator [Bacillus cereus 03BB102]
 gi|225788745|gb|ACO28962.1| response regulator [Bacillus cereus 03BB102]
          Length = 597

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+   +G   + IA KL LS  T+  Y  +   KL   NR +AI  A    
Sbjct: 536 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTEN 595

Query: 233 YI 234
            +
Sbjct: 596 IL 597


>gi|289812420|ref|ZP_06543049.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 170

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 72  PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 131

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 132 IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 165


>gi|194291957|ref|YP_002007864.1| response regulator protein [Cupriavidus taiwanensis LMG 19424]
 gi|193225861|emb|CAQ71807.1| Response regulator protein; Response regulator receiver domain, HTH
           LuxR domain; higly similar to B. subtilis
           Transcriptional regulatory protein degU (Protease
           production enhancer protein) [Cupriavidus taiwanensis
           LMG 19424]
          Length = 223

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +  FL   +   S+ R LT +E + L+L  +G +++EIAE+LG SV TV  +      KL
Sbjct: 132 LQAFLHTDEPPPSSRRALTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHRLHLRRKL 191

Query: 217 DAVNRIQAIAKAI 229
               R + +  A+
Sbjct: 192 RVGGRAELVKYAV 204


>gi|154252142|ref|YP_001412966.1| two component LuxR family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156092|gb|ABS63309.1| two component transcriptional regulator, LuxR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 215

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    LT R+   L   G G +++EIA  LG+S+ TV  ++ +    L   NR +A   A
Sbjct: 145 AGHEKLTPRQREVLLELGKGRSNQEIAHVLGISIATVKLHVNAILQTLGVRNRTEAAIIA 204

Query: 229 IRF 231
           +R 
Sbjct: 205 LRA 207


>gi|119468892|ref|ZP_01611917.1| DNA-binding response regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
 gi|119447544|gb|EAW28811.1| DNA-binding response regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
          Length = 219

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT ++   L +  DG  +++IA  L LS  T+ +++ +  +KL   NR QA+  
Sbjct: 150 LTNQQRKILFMLADGLLNKQIAYDLNLSESTIKSHVSTIFLKLGVKNRTQAVIL 203


>gi|148657072|ref|YP_001277277.1| regulatory protein LuxR [Roseiflexus sp. RS-1]
 gi|148569182|gb|ABQ91327.1| regulatory protein, LuxR [Roseiflexus sp. RS-1]
          Length = 824

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176
           +  +          +     +   L       AH           E     S  +  L+E
Sbjct: 704 SVTLAAPEGFVRVFLDAGPRMAKLLYRAGSPAAHRLLEAFPPTIRERSATLSELSEPLSE 763

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+L   G T  +IA +L +S++TV  ++ S   KL   +R  A+A+A     +
Sbjct: 764 RERDILRLMARGLTYRQIASELMISINTVRYHVKSLYSKLQVSSRTLALARARDLHLL 821


>gi|163845622|ref|YP_001633666.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523324|ref|YP_002567794.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163666911|gb|ABY33277.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447203|gb|ACM51469.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 213

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA------HGACYQVITDFLELFKKRSSAARNLTER 177
           L    NGYV+  +    L   +          H A  + + + L       +   +L+ER
Sbjct: 94  LAAGANGYVLKRAADAELIAAIRAVLRGELYIHPALTRQLLEDLLPQTPALNPWESLSER 153

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L L   GYT+ EIAE+L LS  TV  Y      KL   +R   +  A+    +
Sbjct: 154 EREVLLLVARGYTAAEIAEQLSLSPKTVETYRTRGMEKLGLRSRAALVQYALNHNLL 210


>gi|330964999|gb|EGH65259.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 785

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   LQL   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 721 SDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKI 780

Query: 231 FGYI 234
            G +
Sbjct: 781 LGLL 784


>gi|329936902|ref|ZP_08286581.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329303827|gb|EGG47711.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 215

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               GY++  +    L   V   A G            +   RS     L+ RE   L L
Sbjct: 105 AGATGYLLKDAPREELFTAVRAAARGRTVLSPAVATRLVSAVRSPGGEPLSAREREVLAL 164

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G  + EIA  L +S  TV  +L     KL   +R  A+A A   G +
Sbjct: 165 VARGTPNREIARALFISEATVKTHLTHLYGKLGVKDRAAAVAAAYDRGIL 214


>gi|299141524|ref|ZP_07034660.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
 gi|298576860|gb|EFI48730.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
          Length = 318

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   +     G +++EIAE L +SV+TV  +  +   KL   +       AI  
Sbjct: 249 DQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 HLV 311


>gi|281425332|ref|ZP_06256245.1| hypothetical protein HMPREF0971_02305 [Prevotella oris F0302]
 gi|281400625|gb|EFB31456.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris F0302]
          Length = 318

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   +     G +++EIAE L +SV+TV  +  +   KL   +       AI  
Sbjct: 249 DQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 HLV 311


>gi|269128746|ref|YP_003302116.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313704|gb|ACZ00079.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 220

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L G G ++ EIA +L L   TV  Y+ +   +L+  NR+QA   A   G 
Sbjct: 158 LTGRERDVLGLLGQGLSNAEIAARLHLVEGTVKGYVSTILQRLNVENRVQAAILAYEAGL 217

Query: 234 I 234
           +
Sbjct: 218 V 218


>gi|198276688|ref|ZP_03209219.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135]
 gi|198270213|gb|EDY94483.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135]
          Length = 195

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              +    + A   L+ RE   L+L   G  ++EIA+KL +S+ TV ++  + T KL   
Sbjct: 116 HHPVTPPATDAEHELSAREIEVLRLVTKGLINKEIADKLHISLTTVISHRKNITEKLGIK 175

Query: 220 NRIQAIAKAIRFGYI 234
           +       A+  GYI
Sbjct: 176 SVSGLAIYAVMHGYI 190


>gi|152972576|ref|YP_001337722.1| DNA-binding transcriptional activator UhpA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206578067|ref|YP_002235913.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae 342]
 gi|238897178|ref|YP_002921926.1| DNA-binding transcriptional activator UhpA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040431|ref|ZP_06013674.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|288932920|ref|YP_003436979.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|330005258|ref|ZP_08305212.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Klebsiella sp. MS 92-3]
 gi|150957425|gb|ABR79455.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206567125|gb|ACI08901.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae 342]
 gi|238549508|dbj|BAH65859.1| two-component regulatory system response regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259042184|gb|EEW43212.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|288887649|gb|ADC55967.1| two component transcriptional regulator, LuxR family [Klebsiella
           variicola At-22]
 gi|328536305|gb|EGF62672.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Klebsiella sp. MS 92-3]
          Length = 197

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 6/118 (5%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQ--VITDFLELFKKRSS 169
           A I   V          +       L+     + +I A                 K  + 
Sbjct: 74  ATIMLSVHDSPALIEQALNAGARGFLSKRCSPDELIAAVRTVAAGGCYLTPDIAMKLAAG 133

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   +
Sbjct: 134 RQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELARR 191


>gi|326329224|ref|ZP_08195550.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325952959|gb|EGD44973.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 232

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 2/142 (1%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGA 152
             + +   +  + +    L    +   +R G          +  L+ A   +        
Sbjct: 91  AALTQRHPEALILVLTTFLDEQLVMQAIRAGARGYVVKDVDTTGLVRAIRDVASGGSAFD 150

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                     +    +S    LT RE   L+L   G ++  I  +L +S  T   ++G+ 
Sbjct: 151 ARSAAAMIRGVNMPVTSDDSELTSRELEVLELLAHGLSNRAIGHRLYISDTTAKFHVGNI 210

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL    R +A+ +A + G +
Sbjct: 211 LRKLGVSRRAEAVYEASKMGLL 232


>gi|326331305|ref|ZP_08197597.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
 gi|325950938|gb|EGD42986.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
          Length = 112

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 2/113 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +            +S   + A   +    GA          L      A   LT RE   
Sbjct: 2   LTGRALAEVGDTESSRRELEAARTVFRQIGAVPAADEAEALLAPASLPA--GLTAREAEV 59

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+L   G ++ +IA  L LS  TV  +L +   KLD  +R  A A A   G +
Sbjct: 60  LRLVASGRSNAQIATDLVLSEKTVARHLSNIFTKLDVRSRTAATAFAYEHGVV 112


>gi|300785793|ref|YP_003766084.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299795307|gb|ADJ45682.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 888

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +    +       LTERE S L+L     + +EIAE L +S +TV  ++     KLD  
Sbjct: 805 AVRRRLRTPPMPAPLTERERSVLRLLPTQRSIDEIAEDLTVSPNTVKTHVRGIYAKLDVR 864

Query: 220 NRIQAIAKAIRFGYI 234
           +R +A+  A   G +
Sbjct: 865 SRREAVTIAQERGLL 879


>gi|291003373|ref|ZP_06561346.1| two component transcriptional regulator, LuxR family protein
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R L+ RE   LQL  DG +++EI E L LS  TV ++L     KL   +R Q +A A+
Sbjct: 156 TPRELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAM 215

Query: 230 RFGYI 234
           R G I
Sbjct: 216 RAGVI 220


>gi|209516356|ref|ZP_03265213.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209503292|gb|EEA03291.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 225

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 8/143 (5%)

Query: 99  ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN---GYVIFTSEFLMLANEVIIEAHGACYQ 155
             +G       G +     + F    G  +           +FL                
Sbjct: 75  GENGLEFQDAMGRIGLRIPVVFVTGHGDIEMSVKAMKAGAMDFLTKPFREQDVLDAVSRA 134

Query: 156 VITDFLELFKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +  D   L  ++S     +   +LT RE     L   G  +++IA ++ +S  TV  + G
Sbjct: 135 LAKDRERLCAEQSIGSLRATYESLTPREREVAGLVLAGLLNKQIAAEMNVSEITVKMHRG 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               KL A + ++ + K    G 
Sbjct: 195 QVMKKLSARSVVELVDKLRSLGI 217


>gi|157147038|ref|YP_001454358.1| hypothetical protein CKO_02815 [Citrobacter koseri ATCC BAA-895]
 gi|157084243|gb|ABV13921.1| hypothetical protein CKO_02815 [Citrobacter koseri ATCC BAA-895]
          Length = 209

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 17/157 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLANEV 145
           +      E+   L  RL      F  I   +             G   + ++      E 
Sbjct: 53  LDIAMPDENGLSLLKRLRAQKPTFRAIVLSIYDTPAFVQSALDAGASGYLTKRCGP--EE 110

Query: 146 IIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
           +++A        H  C   +   L   ++ +     LT RE     L   G + +EIA K
Sbjct: 111 LVQAVRSVGMGGHYLCADAL-RALRGGEQPAQVLEVLTPREREVFDLLVKGDSVKEIAFK 169

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV+ +  +   KL   + I  +  A+    +
Sbjct: 170 LDLSHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 206


>gi|148242300|ref|YP_001227457.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147850610|emb|CAK28104.1| Possible two-component system response regulator [Synechococcus sp.
           RCC307]
          Length = 228

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAARN 173
           G   PV          +      +      E  I A    +   +  L   +    +   
Sbjct: 106 GDVIPVEFSDADWLQAVVAEADFVDDQKPLEAAIIAVMGNHGYRSVSLRSGQLPYLSCPR 165

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G +  EIAEKL +S  T   Y       L+  NR+QA+ K +R G 
Sbjct: 166 LTPREYEVLDLLASGLSDREIAEKLIVSEETSRTYTKRLLRTLEVNNRVQAVLKGMRCGM 225

Query: 234 I 234
           +
Sbjct: 226 V 226


>gi|126461161|ref|YP_001042275.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102825|gb|ABN75503.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 203

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 56/214 (26%), Gaps = 21/214 (9%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           +  ++    A  F    +         Q       +Y  D  +          D  +   
Sbjct: 11  ISQLRRMATAGYFLGLHVRFTSPLITMQ-------SYREDWIEYYTEKGYVIYDPTIRWA 63

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
            S      W  + E+                     G+               F      
Sbjct: 64  LSETGHRRWSDLAEQDSRG-----VFAAATQFDLRFGVTCS-WGTRESRSLGSFARSDRE 117

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
             +  +         + + F  L +        LT+ +   L+    G      A KLG+
Sbjct: 118 FTDREV-------ELIFSLFQRLHELTQPPQE-LTQPQIEALRCIAGGDRHAAAAMKLGI 169

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S   + A + SA  +L A    +AI +A  +  I
Sbjct: 170 SESALKARIASARQRLGARTTAEAIQRAKEYRLI 203


>gi|118478620|ref|YP_895771.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043062|ref|ZP_03110301.1| response regulator [Bacillus cereus 03BB108]
 gi|118417845|gb|ABK86264.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196026546|gb|EDX65214.1| response regulator [Bacillus cereus 03BB108]
          Length = 597

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+   +G   + IA KL LS  T+  Y  +   KL   NR +AI  A    
Sbjct: 536 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTEN 595

Query: 233 YI 234
            +
Sbjct: 596 IL 597


>gi|29345566|ref|NP_809069.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571711|ref|ZP_04849117.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298384488|ref|ZP_06994048.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|29337458|gb|AAO75263.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838919|gb|EES67004.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298262767|gb|EFI05631.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 220

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+ E + L+    G T++EIA +  LS HT+N++  +   KL   N  +A   A+R G 
Sbjct: 153 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 212

Query: 234 I 234
           +
Sbjct: 213 V 213


>gi|304382776|ref|ZP_07365260.1| transcriptional regulator [Prevotella marshii DSM 16973]
 gi|304336095|gb|EFM02341.1| transcriptional regulator [Prevotella marshii DSM 16973]
          Length = 318

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L++RE   +     G T++EIA+ L +S++TV  +  +   KL   +       AI  
Sbjct: 249 ESLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 NLV 311


>gi|256421177|ref|YP_003121830.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036085|gb|ACU59629.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 211

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARN 173
            + +   ++ G         + E L+      ++      Q + + +             
Sbjct: 91  RSMVLQMLQQGASGYLLKNISGEELIACIHEALDGQITFSQAVKEIMSRPSVTELKGVPR 150

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   LQL  +G T+ +IA  L LS  TV  +  S   K +  N    I  A+    
Sbjct: 151 LTKREKEILQLIAEGQTTPDIAATLHLSPLTVETHRKSLLQKFEVKNVALLIRTAVEQKL 210

Query: 234 I 234
           +
Sbjct: 211 L 211


>gi|149189059|ref|ZP_01867347.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148837022|gb|EDL53971.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 216

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S    +LT RE   L+    G ++ +I+E L ++  TV ++L     KL   NR+QAIA 
Sbjct: 150 SPTVVDLTAREIEILRCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAW 209

Query: 228 A 228
           A
Sbjct: 210 A 210


>gi|119513392|ref|ZP_01632424.1| Transcriptional Regulator with GAF sensor, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119461942|gb|EAW42947.1| Transcriptional Regulator with GAF sensor, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 224

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 55/216 (25%), Gaps = 29/216 (13%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             +  I      ++  +Y I+              +        +   +         + 
Sbjct: 24  ALMDKIGEYFGVQHCGIYLIDEQPSSEIN------VQTIPAVCMENNPVGRY-----VVE 72

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                   +I      +                      +  P+       G +      
Sbjct: 73  RHAPTHEQLILSPGDWKHFCSR-----------HDHEHVMTGPIVCDGQLVGTLNLARNQ 121

Query: 139 --LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTS 191
                  + I +    C  +      L  K +  +       LT RE    +L   G T+
Sbjct: 122 GTEAFNADDIADLSALCIHLSAKLATLRAKEARISNSLLVSPLTARELEIAELVAQGLTN 181

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            EI  +L ++ ++V   L     KL    R + +AK
Sbjct: 182 AEIGRRLWITQNSVKQALKRMFRKLGVSARSEMVAK 217


>gi|159042867|ref|YP_001531661.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157910627|gb|ABV92060.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 203

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 48/184 (26%), Gaps = 14/184 (7%)

Query: 51  ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110
           + +   Y  +  D          D  L           W  I             +    
Sbjct: 34  LLDYQTYPQEWKDRYTEQAYALRDPLLAWGFGMTGATRWSEIGIPDPFG-----ILDDAA 88

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                 G+A                       ++ I        ++           ++ 
Sbjct: 89  RFGLNYGVAVSC-GEISSRTIAGAARSDREFTDDEISAIQTIVLRLH--------DTTTP 139

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT+ +   L     G      A KLG+S   + A L +A  KL A    +AI +A  
Sbjct: 140 PDSLTKAQIEALGHIAAGDRHTAAAAKLGISESALKARLTAARQKLMARTTAEAIQRAKD 199

Query: 231 FGYI 234
           +  +
Sbjct: 200 YRLL 203


>gi|331001406|ref|ZP_08325026.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
 gi|329568288|gb|EGG50099.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
          Length = 220

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           LT RE   ++L   G  ++EIAE+LG++  TV  +  S   KL    
Sbjct: 140 LTGRELDIVRLITKGLNNKEIAEELGIAEKTVKVHRSSIYRKLQVRT 186


>gi|311107673|ref|YP_003980526.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762362|gb|ADP17811.1| bacterial regulatory protein, LuxR family protein 10 [Achromobacter
           xylosoxidans A8]
          Length = 221

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182
                GY+   S    LA  V +   G                        LT+R+   L
Sbjct: 95  RAGVAGYMPKASSPDALAAAVSLVMAGGECYPQPAARPQGASHPPTQELRELTQRQEEIL 154

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           QL   G T  EI +++G+SV TV ++  +   KL+A N+ +A   A++ G +
Sbjct: 155 QLLVQGKTMREIGQQVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMGLV 206


>gi|225175237|ref|ZP_03729233.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169413|gb|EEG78211.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 215

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + A E +++     ++V++    +   + S  + LTE E   L L  +G T+++IAE+
Sbjct: 116 ERVAAGESLLDPQ-VTFKVLSQMKNIAAGKQS-GKTLTEMEKKVLLLIAEGKTNKQIAEE 173

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + L+  TV  Y+    +KL+  NR  A A 
Sbjct: 174 IFLAEKTVRNYVSKIFLKLNLSNRAAAAAY 203


>gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 220

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTER 177
           LG        F  E L      +++        I    +    R         A +LT+R
Sbjct: 97  LGCDAYLAKPFNLEELAAVIRNLLDRVQIVQTEIQAVSQATPSREPVDTALINALDLTQR 156

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  +G ++ +I E+L LS  TV  Y+     K +  NR + +  A+    +
Sbjct: 157 EQQVLRLLMEGLSNAQIGEQLHLSSRTVEKYVSKLLQKTETSNRAEIVRFAMEHNLL 213


>gi|160887524|ref|ZP_02068527.1| hypothetical protein BACOVA_05544 [Bacteroides ovatus ATCC 8483]
 gi|260171218|ref|ZP_05757630.1| putative transcriptional regulatory protein [Bacteroides sp. D2]
 gi|293371021|ref|ZP_06617563.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|299146534|ref|ZP_07039602.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|156107935|gb|EDO09680.1| hypothetical protein BACOVA_05544 [Bacteroides ovatus ATCC 8483]
 gi|292633951|gb|EFF52498.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|298517025|gb|EFI40906.1| transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 216

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           G ++  +    + + ++  AH        IT+ L +   +      LT  E   L+L   
Sbjct: 103 GMILKENSGEEIHSALMCTAHGERFLCHQITNLLIIGSDKPEIHSVLTVTEIDILKLIAH 162

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G + +EIA +   S+HT+  +  +   KL   N  +A    +R G I
Sbjct: 163 GKSVKEIALERTSSIHTIITHKKNIFRKLGVNNVYEATKYTLRAGLI 209


>gi|307322352|ref|ZP_07601713.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306891999|gb|EFN22824.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 184

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173
            G    G  +   +           +  A  + +   L+L + R                
Sbjct: 60  TGRGDIGITVRAMKAGAHDFLEKPASSAAVLEAVERALQLCETRRKEHDRAQALHTLLAS 119

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE+    L   G  ++++A +L  S  TV A+      KL   +  + ++ A R G 
Sbjct: 120 LTPRESQVFDLIVRGKRNKQVAFELNTSERTVKAHRHKVMEKLGVRSLAEVVSMAERLGL 179

Query: 234 I 234
           +
Sbjct: 180 L 180


>gi|298247591|ref|ZP_06971396.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550250|gb|EFH84116.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDG 188
               +++  E +         V +  L + + +            LT+RE   L     G
Sbjct: 124 ARGEMLIQPETMARLLSHATSV-SPALSVSRSQHPQGAGISGSIALTKRERQVLAGVAQG 182

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             S+EIA +LG++  TV AYL S   KL+  +R  A+A A+ +G +
Sbjct: 183 ERSKEIAVRLGITERTVRAYLTSIYTKLNVDSRASAVAVALAYGLL 228


>gi|300024660|ref|YP_003757271.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526481|gb|ADJ24950.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 207

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               LT RE   L    +G+T+ +IA + G+S +TV  +L +   KL   NR  A+A 
Sbjct: 140 PLEGLTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVAL 197


>gi|256396759|ref|YP_003118323.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362985|gb|ACU76482.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 219

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
              +  ++       LT RE   L     G ++ +I + L LS  TV A++     KL  
Sbjct: 141 RVADRAEQAVKLLAELTPRERDVLAELARGLSNAQIGKSLFLSEATVKAHVSRVMAKLGV 200

Query: 219 VNRIQAIAKAIRFGYI 234
            NR+QA       G +
Sbjct: 201 ANRVQAALVGRDAGLL 216


>gi|170692985|ref|ZP_02884146.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170141983|gb|EDT10150.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 210

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +     L++RE   LQ+   G +  +IA+   LS  T++ +      KL   N  + I
Sbjct: 140 GDAPPHEILSDREFQVLQMLALGKSLNDIADAFALSAKTISTHKMRLMQKLGLANNAELI 199

Query: 226 AKAIRFGYI 234
             AIR G +
Sbjct: 200 RYAIRHGLV 208


>gi|148359909|ref|YP_001251116.1| transcriptional regulator [Legionella pneumophila str. Corby]
 gi|148281682|gb|ABQ55770.1| transcription regulator protein, response regulator containing
           CheY-like receiver domain and HTH DNA-binding domain
           [Legionella pneumophila str. Corby]
          Length = 267

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE  CL L   G T ++I+E L LS  TVN +  S   K+  VN  +A++KA 
Sbjct: 202 PLTQLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAF 261

Query: 230 RFGYI 234
           R G +
Sbjct: 262 RLGLL 266


>gi|320333054|ref|YP_004169765.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754343|gb|ADV66100.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 216

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEK 197
             ++   +         ++ +     ++        LT RE   L+    G +++EIA +
Sbjct: 118 RAVSQGEVSITPMLASGLLYELARPEREPPGGLMTTLTARERQILEGVAAGRSNKEIARE 177

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           L L+  TV  Y+ +   KL   NR++A   A R
Sbjct: 178 LELTEKTVKHYMTNVLQKLQVRNRVEAALLAQR 210


>gi|296389853|ref|ZP_06879328.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 685

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183
                 +     +     +      G    +     +L     S   N  ++ RE   L+
Sbjct: 572 DDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILR 631

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L   G ++ +IA+ + LS  T+  +L +   KL   +R QA+ K    G +
Sbjct: 632 LVAAGLSNRDIAQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLL 682


>gi|288923606|ref|ZP_06417715.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288345043|gb|EFC79463.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 152

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 3/126 (2%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           +   L     I   +     + G ++  +           +      + I   L     R
Sbjct: 1   MLRQLGTQDNIVATIMTPAGRAGLLLVLTPRPGTFTSADRDVIALLARHIGHLLHARLPR 60

Query: 168 SSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + A      L+ RE   ++L   G+++++IA+ L ++VHTV  ++ +        NR Q 
Sbjct: 61  TPAPTALAALSHRERDVIELVASGHSNQQIADTLDVTVHTVKHHVTNVMRTTQCANRTQL 120

Query: 225 IAKAIR 230
                R
Sbjct: 121 ALLWHR 126


>gi|257482053|ref|ZP_05636094.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 687

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ RE   L L   G +++EI+E+L +S+HTV  +      KL    R QA+A+A  
Sbjct: 623 SDCLSVRELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKV 682

Query: 231 FGYI 234
            G +
Sbjct: 683 LGLL 686


>gi|116695031|ref|YP_840607.1| response regulator [Ralstonia eutropha H16]
 gi|113529530|emb|CAJ95877.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 208

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               ++   +L+++E   +Q+   G +++EI E L +S  TV+ +   A  KL A + + 
Sbjct: 136 HADEAARLASLSDKELVVMQMLAKGMSNKEIGETLFISNKTVSTHKTRAMEKLGAKSIVD 195

Query: 224 AIAKAIRFGY 233
            I  A R   
Sbjct: 196 VIDFARRHHI 205


>gi|329941768|ref|ZP_08291033.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299485|gb|EGG43385.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 221

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                    +++   LTERE   + L G G ++EEIA +L +S  T   ++    VKL A
Sbjct: 140 AARSKEPAAAASLARLTEREREVMALVGLGLSNEEIARRLVVSPLTAKIHVSRTMVKLGA 199

Query: 219 VNRIQAIAKAIRFGYI 234
            +R Q +  A   G +
Sbjct: 200 RDRAQLVVLAYESGLV 215


>gi|325124210|gb|ADY83733.1| response regulator GacA (global antibiotic and cyanide control
           protein, LuxR/UhpA family) [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 205

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S   +L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 132 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDV 191

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 192 KLTHLAIRYGLI 203


>gi|302558223|ref|ZP_07310565.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302475841|gb|EFL38934.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1026

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%)

Query: 129  NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                   +  L  +   + +         T          + A  LT RE   L+L   G
Sbjct: 907  AVADHLGAAPLARSAASLAQRARLALIPATREPAAACADPADALGLTSRERDVLRLVAAG 966

Query: 189  YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +T+  IAE+L +S  T + ++ +   KL    R +A A A R G +
Sbjct: 967  HTNRRIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRVGLV 1012


>gi|302039375|ref|YP_003799697.1| LuxR family transcriptional regulator (fragment) [Candidatus
           Nitrospira defluvii]
 gi|300607439|emb|CBK43772.1| Transcriptional regulator, LuxR family (fragment) [Candidatus
           Nitrospira defluvii]
          Length = 94

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              L L K+R      LT RE   L+L   G+ ++EIA++L +SV TV A+  +   K+ 
Sbjct: 18  DPVLPLRKRRP---EALTTREQEILELIWTGFKNKEIAQRLKISVKTVEAHRANMMKKIR 74

Query: 218 AVNRIQAIAKAIR 230
             N  Q +  AI+
Sbjct: 75  VSNTAQLLKAAIQ 87


>gi|269795459|ref|YP_003314914.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097644|gb|ACZ22080.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 222

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                 +   D   L    +  A  L TERE   L L   G +++EIA +L + V TV +
Sbjct: 131 LTRRILREFVDRRSLRPVAAHRADGLLTEREREILLLLAQGMSNDEIARELVVEVSTVKS 190

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L     KL   +R+QA+  A +   +
Sbjct: 191 HLARMLPKLGVRSRLQAVVWAYQNRVV 217


>gi|254506507|ref|ZP_05118649.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
 gi|219550681|gb|EED27664.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
          Length = 211

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+    + 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207


>gi|212709059|ref|ZP_03317187.1| hypothetical protein PROVALCAL_00091 [Providencia alcalifaciens DSM
           30120]
 gi|212687971|gb|EEB47499.1| hypothetical protein PROVALCAL_00091 [Providencia alcalifaciens DSM
           30120]
          Length = 248

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 16/208 (7%)

Query: 33  FALY--TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
           F ++   I  A +     + + ++   + DS +          D F      G    +  
Sbjct: 31  FVVFDNAIIYAFEKDGAPRFLSKVEKRNSDSVNRIYQRGAYLMDPFYQELQKGGSSKVLT 90

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
                          +               + L   K   + F +E      +   +  
Sbjct: 91  LKDVAPKGFYHTDYYLNFYRKTGWCDEAGLLLELSADKQLGIFFGNEDQPFLADEKKQGS 150

Query: 151 G-ACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDGYTSEEIAE 196
               + +I     L K+    + +             LT RE   + L  +G  S +IAE
Sbjct: 151 LKEAFDIIRSIARLHKEVVPNSVSSHYRNTDLQTCFGLTPRECEVVALILEGKGSPQIAE 210

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            L +S+ TV  +  +   KLD  ++++ 
Sbjct: 211 SLFISLGTVKNHRKNIYQKLDINSQVEL 238


>gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 223

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE+  L L   G ++ EI + L LS  TV  Y+ S   K +  NR + +  A+    
Sbjct: 162 LTSRESQVLNLLARGLSNGEIGQNLHLSSRTVEKYVSSLLRKTETNNRAELVRFALDHHL 221

Query: 234 I 234
           I
Sbjct: 222 I 222


>gi|238785765|ref|ZP_04629738.1| hypothetical protein yberc0001_7170 [Yersinia bercovieri ATCC
           43970]
 gi|238713348|gb|EEQ05387.1| hypothetical protein yberc0001_7170 [Yersinia bercovieri ATCC
           43970]
          Length = 210

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  +  IA++L +S  TV  +  +   KLD     + I  + R G 
Sbjct: 149 LTPRERQILKLITEGACNRIIADRLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|315038871|ref|YP_004032439.1| two-component system response regulator [Lactobacillus amylovorus
           GRL 1112]
 gi|312277004|gb|ADQ59644.1| two-component system response regulator [Lactobacillus amylovorus
           GRL 1112]
          Length = 227

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +NL+  E   +Q  G G +++EIA KL LS  TV  Y+     KL   +R Q    A++
Sbjct: 155 QNLSHSEWLIIQQVGFGLSNKEIAAKLFLSEGTVRNYISKILDKLQLRDRTQLAIWAVQ 213


>gi|294675445|ref|YP_003576061.1| LuxR family transcriptional regulator [Prevotella ruminicola 23]
 gi|294472990|gb|ADE82379.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23]
          Length = 213

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               + +   +            LT  E   ++    G T++EIAE+   S+HT+  +  
Sbjct: 124 FISQRALEVIISQQNDEEKP-DILTATEAEIVKAIAQGKTTKEIAEERFSSIHTITTHRK 182

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL      + I  AIR G +
Sbjct: 183 NIFRKLGINTAHELIKYAIRAGLV 206


>gi|288923247|ref|ZP_06417387.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288345421|gb|EFC79810.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 227

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 19/180 (10%)

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             GD+ +        P     +            + R+       A +   +        
Sbjct: 47  ADGDEVIEVVRR-TRP-DVVIMDLHMPGTDGITATRRITAEHPGVAVLVVTMMEDDASVF 104

Query: 131 YVIFTSEFL----MLANEVIIEAH------------GACYQVITDFLELFKKRSSAA-RN 173
             +              + +  A             G   +V+         R + A   
Sbjct: 105 AAMRAGARGYLLKGADQDELRRAINAVANGEAIFGPGIAARVLDLLGRPPTARVNVAFPE 164

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L     G ++  IA  L LS  TV  ++ +   KL   +R +A  +A   G+
Sbjct: 165 LTAREREILDHLAAGRSNSTIARSLALSPRTVANHVSNIFAKLQVADRTEAAIRAREAGF 224


>gi|182440060|ref|YP_001827779.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780729|ref|ZP_08239994.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468576|dbj|BAG23096.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326661062|gb|EGE45908.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 216

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TERE + L+L   G ++ EIA  L +   TV  ++ S   KL A +R QA+  A   G++
Sbjct: 154 TEREAAVLRLMARGLSNAEIAAALVVGTETVKTHVSSVLAKLGARDRTQAVIAAYESGFV 213


>gi|160885020|ref|ZP_02066023.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483]
 gi|156109370|gb|EDO11115.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483]
          Length = 200

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 152 ACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                  D   +               L+ RE   L L   G  ++EIA+KL +S+ TV 
Sbjct: 108 LHQHAHHDGYPVKDMSPMPPMQPHQEILSAREIEVLVLITKGLINKEIADKLNISLTTVI 167

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  + T KL   +       A+  GYI
Sbjct: 168 THRKNITEKLGIKSVSGLTIYAVMNGYI 195


>gi|120401636|ref|YP_951465.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954454|gb|ABM11459.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 843

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 49/212 (23%), Gaps = 5/212 (2%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +L E+   L  + + +      L+                  H   L +    +      
Sbjct: 623 TLDEVFAMLVGLGDPVLWA-VPLHWAGVHAGILANSPDSVAPHGQALTAAAPHSSFARAL 681

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
                         +    +       +    +          A               +
Sbjct: 682 AAAGRTWLKVLANQVDADEVSSAARGLAQYGHTWDATRLAGQAALQT---TDPRVSQAML 738

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
               +                             R +AA  L++RE    +L   G    
Sbjct: 739 QLARDLKDAVAGEAPVDLPDGAPPSAAASAGPSGRPAAAH-LSDREREVAELLLQGLPYR 797

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +I  +L +S  TV  ++     +L A +R + 
Sbjct: 798 DIGAQLFISAKTVEHHVARIRRRLGAESRSEL 829


>gi|319789390|ref|YP_004151023.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans
           HB-1]
 gi|317113892|gb|ADU96382.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans
           HB-1]
          Length = 193

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +L++RE   L L  +G T++EIA +LG+S  TV  Y+     K +  NR+  ++ 
Sbjct: 127 DSLSDRELKVLSLLVEGKTNKEIARELGISEQTVKYYINQLLKKANCSNRVNLVSL 182


>gi|319794782|ref|YP_004156422.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597245|gb|ADU38311.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 235

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 39/100 (39%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
               +  +    I    A  Q     +      S     LT RE   L+L   G ++ ++
Sbjct: 135 GGAPIDPSIARRILGWIAAQQTSLSAVLASDAPSPLPVALTPRERKILELVSQGLSNRDM 194

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L +S  TV  +  +   KL   +R +A+ +  R G +
Sbjct: 195 AESLSISRLTVECHTKNIYRKLAVTSRTEAVFQGRRHGLL 234


>gi|254819179|ref|ZP_05224180.1| LuxR family transcriptional regulator [Mycobacterium intracellulare
           ATCC 13950]
          Length = 402

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 14/232 (6%)

Query: 7   TGKKSSSLQELSPRLHLIQNRI--KARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
             + + +  +L+      +  I   A  F +  + +       +    +      D+   
Sbjct: 174 WAQVALARGDLTSARRFAEEDIASGAGWFMVQALTTRARVALAENEPGQAERDTHDALTR 233

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
              L        L    + L  +     +   +  +S      +           F V  
Sbjct: 234 AVELRAHLFVPDLLECLAQLAHLAGSHPEAARLFGASDA----VRRRTGIVR---FRVYD 286

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAA-RNLTERET 179
             ++       +       +    A  A                +KR      +LT  E 
Sbjct: 287 ADYQASLEQTRNALTDKEFDAAWAAGAALSTEEAIAYARRGRGERKRPPTGWDSLTPTER 346

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             ++L  +G  +++I E+L +S  TV  +L     KL   +R+Q   +A R 
Sbjct: 347 DVVRLVAEGLGNKDIGERLFISPRTVQTHLTHVYAKLGLTSRMQLAQEAARR 398


>gi|239942897|ref|ZP_04694834.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 224

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              G     +         R      LT RE   L   G G ++ EIA +L L   TV A
Sbjct: 134 RVAGRVIAGMRAHRAAHPHR--PLERLTGREREVLAGIGTGLSNAEIAGRLHLVEGTVKA 191

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   NR++A   A   G +
Sbjct: 192 HVSAVLAKLGVRNRVEAAIAAHEAGLL 218


>gi|167464818|ref|ZP_02329907.1| Regulatory protein related to malT, positive regulator of mal
           regulon (ATPase and HTH-type DNA-binding domain)
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 193

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 151 GACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
               ++ +  +E+ K RS    +       L++RE   LQ+   G  ++EI ++L +S+ 
Sbjct: 102 RFAQRIQSFVVEVKKGRSLPLASAEQETAILSKRELEVLQVLAAGRRNKEIGKELCISLA 161

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV +++ +   KL   NR++A+ +      +
Sbjct: 162 TVKSHVINIYSKLQVSNRVEAVERGRELRLL 192


>gi|16332248|ref|NP_442976.1| response regulator like-protein [Synechocystis sp. PCC 6803]
 gi|1653878|dbj|BAA18788.1| response regulator like protein [Synechocystis sp. PCC 6803]
          Length = 228

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 42/80 (52%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            + +    +   R S    LT+RE + L+L  +G T+ EI ++L L+  TV  Y+ +   
Sbjct: 148 YIDSRLEAIADYRKSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMR 207

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL+A +R  A    +R GY+
Sbjct: 208 KLNARDRTSAAIAGLREGYL 227


>gi|226228720|ref|YP_002762826.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091911|dbj|BAH40356.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 210

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 7/149 (4%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152
                +         +         IA     G       +       L  + +      
Sbjct: 59  DLRMPVMDGVSAIGAIRDEFPDARIIALTTYEGDEDIHRALSAGARGYLLKDTLRTELLQ 118

Query: 153 CYQVITDFLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
             + +   L       +           LT RE   L+L   G ++ +IA +LG +  T+
Sbjct: 119 VIRNVYRGLRGIPAPVAARLAEYTPRVALTARELEVLELMAQGLSNPDIAIRLGRAESTM 178

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             ++ +   KL   +R  A+  A+R G I
Sbjct: 179 KVHVRNILQKLGTDDRTAAVTTALRRGII 207


>gi|198276810|ref|ZP_03209341.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135]
 gi|198270335|gb|EDY94605.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135]
          Length = 215

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   +QL  +GYTS+EIA +L +  +TV  Y      KLD  + I+ +  A +  
Sbjct: 153 ELTDRELEVIQLLANGYTSKEIANELNIDRNTVETYKDRIKSKLDCKSAIEIVVFAYKNK 212

Query: 233 YI 234
            I
Sbjct: 213 LI 214


>gi|156975758|ref|YP_001446665.1| hypothetical protein VIBHAR_03493 [Vibrio harveyi ATCC BAA-1116]
 gi|156527352|gb|ABU72438.1| hypothetical protein VIBHAR_03493 [Vibrio harveyi ATCC BAA-1116]
          Length = 213

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   G ++++IA +L LS  TV +++     KLD   R  AI     
Sbjct: 147 HDSLTSRERQILELLAYGISNQQIASQLFLSESTVKSHIYKLYKKLDVHCRHDAIKIVRM 206

Query: 231 FG 232
            G
Sbjct: 207 NG 208


>gi|149378247|ref|ZP_01895960.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
 gi|149357474|gb|EDM45983.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
          Length = 220

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT R+   L L  DG  ++ I + L L+ HTV  +L +    LD  NR + +A+A   
Sbjct: 158 EHLTPRQLEVLTLLADGLPNKRICQALDLTEHTVKTHLKAIFTHLDVHNRTECVAQARAL 217

Query: 232 GYI 234
           G +
Sbjct: 218 GLL 220


>gi|187930859|ref|YP_001901345.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 201

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 36/75 (48%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                   +     L+ERE   L  +  G TS EIA  LGLS  TV+ ++ +A  KL   
Sbjct: 125 ARRPRTHAAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVA 184

Query: 220 NRIQAIAKAIRFGYI 234
            RI+A+ +A   G I
Sbjct: 185 TRIEAVVRASSAGII 199


>gi|148555438|ref|YP_001263020.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148500628|gb|ABQ68882.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 879

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RET  + L  +GY ++EIA +LG+S  TV  +      KL   +R QAIA+A     
Sbjct: 819 LSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIHEKLGVASRSQAIARARDLLI 878

Query: 234 I 234
           I
Sbjct: 879 I 879


>gi|53717636|ref|YP_106110.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53722543|ref|YP_111528.1| two-component response regulator [Burkholderia pseudomallei K96243]
 gi|76819257|ref|YP_335719.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|52212957|emb|CAH38995.1| putative two-component response regulator [Burkholderia
           pseudomallei K96243]
 gi|52423606|gb|AAU47176.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76583730|gb|ABA53204.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
          Length = 223

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 32/66 (48%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S    LT RE   L+L  DG  + EIA  L +S  TV+ +      KL A N    I  
Sbjct: 150 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHW 209

Query: 228 AIRFGY 233
           A R+GY
Sbjct: 210 AYRYGY 215


>gi|332669618|ref|YP_004452626.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338656|gb|AEE45239.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 224

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 19/152 (12%)

Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHG------ 151
            ++  R          +A  V         VI +         +    + +A        
Sbjct: 73  AEVIRRCTDLQGTTRFLALSVSDAAEDVVAVIRSGARGYVTKAIDGGELSDAVRRVAGGD 132

Query: 152 ------ACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                     V+  F       +        L+ RE   ++L   GYT  E+A +L +SV
Sbjct: 133 AVFSPRLAGFVLDAFGAAAGDVATGDDELDRLSAREREVMRLIARGYTYREVASELFISV 192

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  ++ +   KL   +R +    A     +
Sbjct: 193 KTVETHVSAVLRKLQLSSRHELTRWAAARRLL 224


>gi|323357741|ref|YP_004224137.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274112|dbj|BAJ74257.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 224

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 152 ACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               V+  +L       +     LTERE   L   G G ++ +I  ++ LS  TV A++ 
Sbjct: 135 VSRAVVAGYLRPETGGDTRLVEGLTEREKEILVHLGRGLSNAQIGSEMFLSPATVKAHIS 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL    R+ A   A R G +
Sbjct: 195 TILSKLGVEGRVSAALIAERAGLL 218


>gi|302390092|ref|YP_003825913.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200720|gb|ADL08290.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
          Length = 327

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT +E         G T++EIA +L LS  TV  Y+     KL+  NR   ++ A+
Sbjct: 261 PLNLLTAQEQKVFYALALGKTNKEIASELYLSPATVRNYVSKILRKLNLPNRSAVVSYAM 320

Query: 230 RF 231
           + 
Sbjct: 321 KN 322


>gi|293373319|ref|ZP_06619677.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|292631715|gb|EFF50335.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
          Length = 148

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++       L++RE   +     G T++EIAEKL LS+HTV  +  + + KL   +   
Sbjct: 70  EEEEMDNQDTLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAG 129

Query: 224 AIAKAIRFGYI 234
               AI    +
Sbjct: 130 LTIYAIVNKLV 140


>gi|262403969|ref|ZP_06080524.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262349001|gb|EEY98139.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 222

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 16/124 (12%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------- 169
           +   +  G           + +  A   I+        +  D L    K           
Sbjct: 91  VLQTLAYGAVGYVAKSCARQQMGEAFAQILRGD---VYLPADILRENVKNPPSSSLRKQA 147

Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                A + LT ++   LQ    G  +++IA  L +S  TV +++ +   KL   NRIQA
Sbjct: 148 DFSVEALQTLTRKQLQVLQSMSKGAANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQA 207

Query: 225 IAKA 228
           +  A
Sbjct: 208 VVGA 211


>gi|254563130|ref|YP_003070225.1| transcriptional regulator, PAS domain S-box [Methylobacterium
           extorquens DM4]
 gi|254270408|emb|CAX26408.1| putative transcriptional regulator, PAS domain S-box
           [Methylobacterium extorquens DM4]
          Length = 500

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGY 189
           +E +     V+ +A    + +I   L L +              LT RE   L     G 
Sbjct: 383 TELIAAIETVMADASWFSHGIIEK-LALMRNPPPPGKPAALVEKLTRRERDLLLGICKGA 441

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           T  EIA +LGLS+ TV  +L S   K+    R   +  A   G 
Sbjct: 442 TDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERGI 485


>gi|227818474|ref|YP_002822445.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227337473|gb|ACP21692.1| putative transcriptional regulator protein, LuxR family
           [Sinorhizobium fredii NGR234]
          Length = 263

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + +K   A   L  RE   L L   G  ++ IA +LGLS +TV  ++ +   K++  NR 
Sbjct: 176 MERKTDFAQGLLRMREIQILDLICVGTPNKIIAHRLGLSENTVKVHVRNIYKKMNVHNRT 235

Query: 223 QAIAKAIR 230
           +A ++  R
Sbjct: 236 EAASRCFR 243


>gi|126658803|ref|ZP_01729947.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126619901|gb|EAZ90626.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 224

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE+  L L   G ++ EI ++L LS  T+  Y+ S   K D  NR + +  A+    
Sbjct: 163 LTRRESEVLDLLTTGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDHHL 222

Query: 234 I 234
           +
Sbjct: 223 V 223


>gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 242

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F  +    + +       ++TD  +   +      + T RE S LQL  +G  ++EI
Sbjct: 142 AARFADIDVSKMAKQITEIKSMLTDQNQANPENKINLPSFTPREASVLQLVAEGLMNKEI 201

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+    +K    +R + +  A+    +
Sbjct: 202 ARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|121603022|ref|YP_980351.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120591991|gb|ABM35430.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 219

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                      +LT R+   L+L   G +++ IA KL LS HT+  ++ +     +A+ R
Sbjct: 142 AAAGAIPGGDESLTPRQYEVLKLLAQGLSNKAIAFKLHLSEHTIRNHVVAILRHFNALTR 201

Query: 222 IQAIAKAIRFGYI 234
            +A+  + R G +
Sbjct: 202 TEAVMASQRLGLL 214


>gi|67641422|ref|ZP_00440201.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|126444300|ref|YP_001063145.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126447142|ref|YP_001077967.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126456927|ref|YP_001076095.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134281974|ref|ZP_01768680.1| BipB protein [Burkholderia pseudomallei 305]
 gi|166999878|ref|ZP_02265708.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167725537|ref|ZP_02408773.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167743182|ref|ZP_02415956.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167820355|ref|ZP_02452035.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167828726|ref|ZP_02460197.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167850181|ref|ZP_02475689.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167898791|ref|ZP_02486192.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167907119|ref|ZP_02494324.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167915473|ref|ZP_02502564.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167923317|ref|ZP_02510408.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217425144|ref|ZP_03456639.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226196039|ref|ZP_03791625.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507699|ref|ZP_04520414.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242312836|ref|ZP_04811853.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254176376|ref|ZP_04883034.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254185184|ref|ZP_04891773.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254186839|ref|ZP_04893355.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254204939|ref|ZP_04911292.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254263032|ref|ZP_04953897.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254301472|ref|ZP_04968916.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|126223791|gb|ABN87296.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126230695|gb|ABN94108.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|126239996|gb|ABO03108.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134246503|gb|EBA46591.1| BipB protein [Burkholderia pseudomallei 305]
 gi|147754525|gb|EDK61589.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|157811119|gb|EDO88289.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157934523|gb|EDO90193.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697418|gb|EDP87388.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|184215776|gb|EDU12757.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217391749|gb|EEC31776.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225931932|gb|EEH27933.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999904|gb|EEP49328.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|238522359|gb|EEP85804.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242136075|gb|EES22478.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|243064182|gb|EES46368.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254214034|gb|EET03419.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 214

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 32/66 (48%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S    LT RE   L+L  DG  + EIA  L +S  TV+ +      KL A N    I  
Sbjct: 141 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHW 200

Query: 228 AIRFGY 233
           A R+GY
Sbjct: 201 AYRYGY 206


>gi|307565420|ref|ZP_07627909.1| hemerythrin HHE cation binding domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345870|gb|EFN91218.1| hemerythrin HHE cation binding domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 318

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           K   A+  L++RE   +     G  ++EIA+ L +S +TV  +  +   KL   +     
Sbjct: 243 KNPEASDTLSDREKEVIIALVQGMANKEIADHLCISTNTVITHRRNIARKLQIHSPAGLT 302

Query: 226 AKAIRFGYI 234
             AI    +
Sbjct: 303 IYAIVNNLV 311


>gi|262280669|ref|ZP_06058452.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|299771874|ref|YP_003733900.1| response regulator [Acinetobacter sp. DR1]
 gi|262257569|gb|EEY76304.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|298701962|gb|ADI92527.1| response regulator [Acinetobacter sp. DR1]
          Length = 211

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L   + S    L+ERE     +  +  +++EIA+KL +SV TVN Y      KL   + +
Sbjct: 138 LSDTQQSPFDALSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR+G I
Sbjct: 198 KLTHLAIRYGLI 209


>gi|262275113|ref|ZP_06052924.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
 gi|262221676|gb|EEY72990.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
          Length = 222

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSA--- 170
           I   +  G           E +  A E I++ H        +   +     +++      
Sbjct: 91  ILQTIAYGAVGFIAKSAPRERMRDAFEKILDGHVYLPADIIRAEGEGETSQRRKEDPQFS 150

Query: 171 ---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                 LT R+   L+    G  +++IA  L +S  TV +++ +   KL   NRIQA+ 
Sbjct: 151 PEMLHTLTRRQLLVLKSMAQGAANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVV 209


>gi|258652113|ref|YP_003201269.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258555338|gb|ACV78280.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 230

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 10/160 (6%)

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGYVIF 134
            L     G +P   +++    VI+ S  ++    G       G A P          +  
Sbjct: 80  VLRALQRGSIP---RTVLVARVIDDSTLVAAAEAGVGGLLRRGDATP---DSLARAILRV 133

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +    +  +++    G   ++    L     R  A   L++RE   L+L  +G+ + EI
Sbjct: 134 AAGEGEVPPDLLGRLLGQVGRLQRQVLA---PRGLAFSGLSDREAEVLKLVANGHDTAEI 190

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S  TV   L   T +L   NR  A+A A+R G I
Sbjct: 191 AGRLSYSQRTVKNILHDVTTRLQLRNRSHAVAYAVREGLI 230


>gi|212710646|ref|ZP_03318774.1| hypothetical protein PROVALCAL_01712 [Providencia alcalifaciens DSM
           30120]
 gi|212686727|gb|EEB46255.1| hypothetical protein PROVALCAL_01712 [Providencia alcalifaciens DSM
           30120]
          Length = 208

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              C   +   L    ++    + LT RE     L   G + + IAE+L LS  TV+ + 
Sbjct: 123 CYLCADAM-RALRQTPQQKQGIQELTNREREVFNLLVAGLSVKVIAEQLNLSHKTVHVHR 181

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL   + I  +  A+    I
Sbjct: 182 ANVLGKLQCESTIDLVHYALEHNII 206


>gi|116493461|ref|YP_805196.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103611|gb|ABJ68754.1| DNA-binding response regulator (Rec-wHTH domains) [Pediococcus
           pentosaceus ATCC 25745]
          Length = 191

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE S L+ A  G  ++ +A+KL LS  TV  YL +   KL   NR++AI  A +  
Sbjct: 129 PLSEREMSVLKAAVSGDATKVMAQKLFLSEGTVRNYLSAIFSKLGVHNRLEAIEVAKKNK 188

Query: 233 YI 234
           +I
Sbjct: 189 WI 190


>gi|114563003|ref|YP_750516.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114334296|gb|ABI71678.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
          Length = 216

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +LT ++   L +  +G  +++IA +L LS  T+ ++  +  +KL   NR QA+  
Sbjct: 149 SLTPQQRKILLMFAEGLLNKQIAYELNLSESTIKSHASTIFLKLGVKNRTQAVIL 203


>gi|330809600|ref|YP_004354062.1| two-component Response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377708|gb|AEA69058.1| Putative two-component Response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 210

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +    LT RE+  L     G  ++E+A +L +SV TV  +  S   KL+       +  
Sbjct: 142 PNTDSELTPRESQVLAKMVQGLNNKEMARELDISVRTVETHRLSIRRKLNIDKPAALVKY 201

Query: 228 AIRFGYI 234
           AI  G I
Sbjct: 202 AIDHGII 208


>gi|304413478|ref|ZP_07394951.1| UvrY transcriptional regulator [Candidatus Regiella insecticola
           LSR1]
 gi|304284321|gb|EFL92714.1| UvrY transcriptional regulator [Candidatus Regiella insecticola
           LSR1]
          Length = 222

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +       A     Q+     +L  +  +    L++RE   + +   G    EIAE+L
Sbjct: 116 RAVHAGQRYIASDIAQQM--ALSQLQPQAEAPFDCLSDRELQIMLMITKGKKVNEIAEQL 173

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            LS  TVN+Y      KL     ++    AIR G+
Sbjct: 174 HLSPKTVNSYRYRMFEKLKINGDVELTHLAIRHGF 208


>gi|290957183|ref|YP_003488365.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260646709|emb|CBG69806.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 974

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              A   ++          +     LT RE+  L+L   G T+ +I ++L ++  T + +
Sbjct: 886 LRAALDALVRRGRLAETSTAGNVPALTARESDVLRLLALGRTNRQIGDELFITGKTASVH 945

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL A +R +A+A A R G I
Sbjct: 946 VSNILAKLGAASRTEAVAIAYREGLI 971


>gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 242

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            + T RE S LQL  +G  ++EIA KL  S+  V  Y+    +K    +R + +  A+  
Sbjct: 179 PSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALEN 238

Query: 232 GYI 234
             +
Sbjct: 239 HLV 241


>gi|332716184|ref|YP_004443650.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325062869|gb|ADY66559.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 783

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
               F+  +++V          V +               L++RE   LQL   G ++++
Sbjct: 689 RIRGFIETSSDVRNALSIFAASVNSPQARALHG------GLSQREAQMLQLLASGMSNKK 742

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA+ L +S  TV  +LG+   KLD   R +AI  A   G++
Sbjct: 743 IAQTLNISEVTVKFHLGNLFRKLDCKRRAEAIRAAKALGWL 783


>gi|312199753|ref|YP_004019814.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231089|gb|ADP83944.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 246

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L L     T+ EIA++L +S  TV  ++G    KL   +R+Q +A A   G I
Sbjct: 176 DREHDVLLLVAQARTNREIADELHVSEATVKVHVGRILAKLGLRDRVQTVAFAYETGLI 234


>gi|269968356|ref|ZP_06182375.1| Nitrate/nitrite response regulator protein narP [Vibrio
           alginolyticus 40B]
 gi|269827042|gb|EEZ81357.1| Nitrate/nitrite response regulator protein narP [Vibrio
           alginolyticus 40B]
          Length = 76

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE+  L+    G+ +++IA++L +S  TV  ++ S   KL   +R  A    +  
Sbjct: 12  DTLTDRESQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 71


>gi|260770808|ref|ZP_05879737.1| transcriptional regulator LuxR family [Vibrio furnissii CIP 102972]
 gi|260614045|gb|EEX39235.1| transcriptional regulator LuxR family [Vibrio furnissii CIP 102972]
 gi|315178850|gb|ADT85764.1| transcriptional regulator, LuxR family protein [Vibrio furnissii
           NCTC 11218]
          Length = 209

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 149 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|262200217|ref|YP_003271425.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083564|gb|ACY19532.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 489

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            +   +    +     LTERE   L+   DG ++ EIA  L +S  TV  ++    +KL 
Sbjct: 415 REAGHVSTPTTDTLDALTERERDVLRCVSDGLSNAEIAAALVISEATVKTHVSRILMKLG 474

Query: 218 AVNRIQAIAK 227
             +R+QA   
Sbjct: 475 LQSRVQAAIF 484


>gi|302525783|ref|ZP_07278125.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434678|gb|EFL06494.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 221

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R L+ RE   LQL  DG +++EI E+L LS  TV ++L     KL   +R Q +A A+
Sbjct: 156 TPRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALAM 215

Query: 230 RFGYI 234
           R G I
Sbjct: 216 RAGVI 220


>gi|254488693|ref|ZP_05101898.1| DNA-binding response regulator, LuxR family [Roseobacter sp.
           GAI101]
 gi|214045562|gb|EEB86200.1| DNA-binding response regulator, LuxR family [Roseobacter sp.
           GAI101]
          Length = 233

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                +   +LT ++   LQL  +G  +++IA +L ++  TV A++ +   KL   +R Q
Sbjct: 156 SDANLARLASLTNQQYRILQLICEGKLNKQIAFELSIAETTVKAHVTAIMRKLGVQSRTQ 215

Query: 224 AIAKAIRF 231
           A+  A   
Sbjct: 216 AVLVAHEA 223


>gi|119492940|ref|ZP_01623970.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106]
 gi|119452866|gb|EAW34040.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106]
          Length = 121

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 37/68 (54%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           +L   + +S  +  L++RE    +L  +G  ++ IA++LG+S  TV+ YL     KL+  
Sbjct: 45  YLVRCQPKSDQSVQLSQREQEIAKLVAEGLPNKCIAKELGISQWTVSTYLRRIFGKLNVT 104

Query: 220 NRIQAIAK 227
           NR    AK
Sbjct: 105 NRAAMTAK 112


>gi|74317308|ref|YP_315048.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056803|gb|AAZ97243.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 209

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              +    L++RE   ++L   G +  +IA+KL LS  T++ Y   +  KL   N  + +
Sbjct: 141 DERAPHEQLSDREFQIVRLIAQGESLNQIADKLSLSAKTISTYKARSMQKLGISNHTELV 200

Query: 226 AKAIRFGYI 234
             AI   +I
Sbjct: 201 RYAIAHHWI 209


>gi|27377870|ref|NP_769399.1| response regulator FixJ [Bradyrhizobium japonicum USDA 110]
 gi|120201|sp|P23221|FIXJ_BRAJA RecName: Full=Transcriptional regulatory protein fixJ
 gi|39524|emb|CAA40144.1| fixJ [Bradyrhizobium japonicum]
 gi|3021310|emb|CAA06275.1| FixJ protein [Bradyrhizobium japonicum]
 gi|27351016|dbj|BAC48024.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 205

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 41/98 (41%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
            F       +IE+     +       + +  ++   +L+ RE   ++    G +++ IA 
Sbjct: 106 PFEDDRLTAMIESAIRQAEPAAKSEAVAQDIAARVASLSPRERQVMEGLIAGLSNKLIAR 165

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +S  T+  Y  +   K+ A +  + +  A+R G +
Sbjct: 166 EYDISPRTIEVYRANVMTKMQANSLSELVRLAMRAGML 203


>gi|116748029|ref|YP_844716.1| two component LuxR family transcriptional regulator
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697093|gb|ABK16281.1| two component transcriptional regulator, LuxR family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 206

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175
             P+ +   K+G V F         + ++ A     +         +K         +L+
Sbjct: 86  TIPMSVRAVKSGAVDF--LQKPCDEQDLLRAIHRAIEQDRRTRREKEKLREIHKLIDSLS 143

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE         G  ++++A +LG +  T+ A+      K+ A +    +  A + G 
Sbjct: 144 PREHEVFTHLVSGMLNKQVAYRLGTTERTIKAHRRRIMEKMKADSMADLVRYAEKLGL 201


>gi|300088598|ref|YP_003759120.1| MalT-like ATP-dependent transcriptional regulator [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528331|gb|ADJ26799.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 904

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L            L++RE   L+L   G ++ +I E++ L++ TV  +      KL    
Sbjct: 831 LSPCPSVQPLIEPLSQRELEILRLMAQGLSNRQICERVFLALDTVKGHNRKIFDKLQVQR 890

Query: 221 RIQAIAKAIRFGYI 234
           R  AIA+A  FG +
Sbjct: 891 RTGAIARAREFGLL 904


>gi|312200777|ref|YP_004020838.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311232113|gb|ADP84968.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 225

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
             + A     +++  F +    R        LT RE   L     G T+ EIA +L +++
Sbjct: 131 DALIAPAVTARLLAAFADAGPGRPPRQPVEPLTGREEQVLAAVARGRTNNEIAAELYITL 190

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            TV  ++ S   KL A NR++    A  
Sbjct: 191 STVKTHVASLMAKLAARNRVEIAIWAYE 218


>gi|260774199|ref|ZP_05883114.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP
           69.14]
 gi|260611160|gb|EEX36364.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP
           69.14]
          Length = 263

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 54/221 (24%), Gaps = 29/221 (13%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLD---SGDIPNILIETYGDDFLFHFNSGLLPII 88
            F  +     L + + +  I    +                  Y D F           +
Sbjct: 31  RFVTFDCAVILGYRQHKHPIYLYDSLPSQRQLLFQHYLTHSYRY-DPFYVAIVEQQQTGV 89

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK--NGYVIFTSEFLMLANEV- 145
            Q  + + V        V           +   V L  ++    Y+        ++ +  
Sbjct: 90  LQRSEFKPVNPLQENYHVDFYQKTGWQDEVCIAVDLEDNRWIVIYLGMLQTDQPISQQQI 149

Query: 146 ------------IIEAHGACYQVITDFLELFKK----------RSSAARNLTERETSCLQ 183
                       +   H     +        +              A   LT RE     
Sbjct: 150 NGLKQSFTVLQALCRQHWGSQALFLAENSQSEHDLRHWVAAAIADFATDCLTPREQQITT 209

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           L   G  S+EIA +L +S  TV  +      +L   +  + 
Sbjct: 210 LLVQGLDSQEIAAQLSISHGTVKNHRKRIYQQLQISSLSEL 250


>gi|238760511|ref|ZP_04621646.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
 gi|238701263|gb|EEP93845.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
          Length = 209

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 13/160 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      ES   L  RL   +  F  I   +             G   + ++   
Sbjct: 48  VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107

Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +E++                    L    ++      LT RE    QL  +G + + I
Sbjct: 108 P-HELVQALRTVNGGGLYLCADALRALRHMPQQPQQLAILTPREKEVFQLLINGISVKNI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+L LS  TV+ +  +   KL+    ++ +  A++   +
Sbjct: 167 AEQLLLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|291286070|ref|YP_003502886.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883230|gb|ADD66930.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 193

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L+ERE    +    G ++ EIA+ + ++V TV A+L S   K    +R   +A A+R 
Sbjct: 138 LSEREMEVARYVAQGQSNIEIADNMDITVRTVKAHLTSIFNKTGLRDR---VALALRL 192


>gi|134103056|ref|YP_001108717.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008989|ref|ZP_06566962.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915679|emb|CAM05792.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 215

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE         G ++ EIA  L +S+ TV  ++G    KL   NR Q    A 
Sbjct: 151 RMEELTAREREVAVAVAQGMSNAEIAGNLHMSLSTVKVHIGRIMTKLGMANRTQVAILAH 210

Query: 230 RFGY 233
             G 
Sbjct: 211 DAGL 214


>gi|91782267|ref|YP_557473.1| ATP-dependent transcription regulator LuxR [Burkholderia xenovorans
           LB400]
 gi|91686221|gb|ABE29421.1| ATP-dependent transcriptional regulator, MalT related, LuxR family
           [Burkholderia xenovorans LB400]
          Length = 251

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 139 LMLANEVIIEAHGACYQ----VITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTS 191
                  +   H  C Q     ++      +  +        LT RET  L+L  +G ++
Sbjct: 148 RQAEISFLDRLHEICSQSDGDALSQTAHPAELTAGPVDEVQPLTARETQLLRLVNEGLSN 207

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +A++L LS+ TV  +L +   KL   NR  A+AKA  +G +
Sbjct: 208 QTVADQLSLSLPTVKWHLRNLYDKLGVRNRSAALAKARAYGLL 250


>gi|261821062|ref|YP_003259168.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261605075|gb|ACX87561.1| two component transcriptional regulator, LuxR family
           [Pectobacterium wasabiae WPP163]
          Length = 209

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 11/159 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---- 142
           I    I      ES   L  RL      F  I   +          +       L     
Sbjct: 48  IDVAVIDIAMPDESGLSLLNRLRQQRPNFRAIILSIYDTTAFVQSALDAGAGGYLTKRCG 107

Query: 143 NEVIIEAHGACYQ-----VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIA 195
            E +++A                  +  ++        LT RE     L  +G + + IA
Sbjct: 108 PEELVQAVRVVSSGGLYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSIA 167

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+L LS  TV+ +  +   KL   + ++ +  A++   +
Sbjct: 168 EQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206


>gi|297202823|ref|ZP_06920220.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717613|gb|EDY61647.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 217

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L +      R +TERE   L+L  +G+T++EI E L +S  TV  +  +   KL   +R
Sbjct: 143 RLHRGDDLPRRAVTEREEEILKLVAEGHTTKEIGELLFISAKTVERHRANLLHKLGMRDR 202

Query: 222 IQAIAKAIRFGYI 234
           ++    AIR G I
Sbjct: 203 LELTRYAIRAGLI 215


>gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 204

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 139 LMLANEVIIEAHGACYQV-ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193
            +   ++I        +    +     K  ++ A+     LT RE   L     G T+ E
Sbjct: 105 PVEPADLIAAVQARLRRAQAANPARPAKGEAAPAQLEPLGLTPREAEILFWVAQGKTNPE 164

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           IA  LG+ + TV  +L +  VKL   NR  A A A+  
Sbjct: 165 IATILGIGLTTVKKHLEAVFVKLGVENRTSAAALALEQ 202


>gi|168231547|ref|ZP_02656605.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168240384|ref|ZP_02665316.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261008|ref|ZP_02682981.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168465653|ref|ZP_02699535.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194445419|ref|YP_002039793.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194448069|ref|YP_002044584.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471844|ref|ZP_03077828.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194734277|ref|YP_002113562.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|204930612|ref|ZP_03221542.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|238911321|ref|ZP_04655158.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|194404082|gb|ACF64304.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406373|gb|ACF66592.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458208|gb|EDX47047.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194709779|gb|ACF89000.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631799|gb|EDX50319.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|204320546|gb|EDZ05749.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205334067|gb|EDZ20831.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205340203|gb|EDZ26967.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205350008|gb|EDZ36639.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 210

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  A    
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208

Query: 233 YI 234
            +
Sbjct: 209 LL 210


>gi|167471072|ref|ZP_02335776.1| response regulator UvrY [Yersinia pestis FV-1]
          Length = 197

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181
           G           + ++ A  ++          I   + L +    A      L+ERE   
Sbjct: 76  GAGGYLSKGAAPQDVITAIRMVHAGQRYIASDIAQQMALSQLEPPAETPFSCLSERELQI 135

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   G    EI+E+L LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 136 MIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 187


>gi|21218760|ref|NP_624539.1| LuxR family two-component response regulator [Streptomyces
           coelicolor A3(2)]
 gi|5777679|emb|CAB53428.1| putative luxR family two-component response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 233

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLA 185
            G  + ++   +   + +++A     +++       ++          LT+RE   L+L 
Sbjct: 119 QGSDLVSAVRTVARGQSLLDASAT-TKLMARLRGGGQQPVEEPEMLPGLTDREREILELI 177

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G+G T+ +I ++L L+  TV  ++     KL    RIQA   A + 
Sbjct: 178 GEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 223


>gi|332886331|gb|EGK06575.1| hypothetical protein HMPREF9456_00449 [Dysgonomonas mossii DSM
           22836]
          Length = 218

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             C +V    L+  K  +    + LT  E   L+    G T++EIA    LS HT+  + 
Sbjct: 127 FICARVANQLLQAQKAPTDTVDHILTSTEKEILKEIAIGRTTKEIAANRNLSFHTIITHR 186

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+  N  +A   A+R G I
Sbjct: 187 KNIFRKLEVNNVHEATKYAMRAGLI 211


>gi|291447955|ref|ZP_06587345.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL
            15998]
 gi|291350902|gb|EFE77806.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL
            15998]
          Length = 1092

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 136  SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEI 194
                 +   V+  A  A     +   E     ++ A   LT RE    +L   G+T+ +I
Sbjct: 990  GPDAGIPPAVLAPASAADRPGRSRAEEEDPAIAAVASFGLTPREQDVHRLVAAGHTNRKI 1049

Query: 195  AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            AE+L +S  T + ++ +   KL   +R +A A A R   
Sbjct: 1050 AEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRLRL 1088


>gi|316935154|ref|YP_004110136.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602868|gb|ADU45403.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 208

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 13/114 (11%)

Query: 127 HKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAA------RN 173
                 +   +   L         + I+       +  +   +  +   + +        
Sbjct: 89  GDIAMAVNAIKNGALDFIEKPFRGKEIVSRVEEAIEAFSRRRDASQGSKAPSYNFPGKEP 148

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT RE   L+L   G T++E    LG+S  T+  +  +   KL A N    +  
Sbjct: 149 LTLREREVLELFSSGNTNKEAGRHLGISPRTIEYHRANIMKKLGARNATDLVRI 202


>gi|282878907|ref|ZP_06287671.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281298906|gb|EFA91311.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 313

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIAE L +S++TV  +  +   KL   +       AI  
Sbjct: 244 EALSDREKEVVISLVQGMTNKEIAEHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVT 303

Query: 232 GYI 234
             +
Sbjct: 304 NLV 306


>gi|239979954|ref|ZP_04702478.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291451807|ref|ZP_06591197.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354756|gb|EFE81658.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 235

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA-----ARNLT 175
           +R G         T   L+ +   + +       ++    L+ F    +         LT
Sbjct: 117 IRGGARGYVTKNITGADLVDSIFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLT 176

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   GY  +E+A++L +SV TV +++ +   KL   NR +    A     +
Sbjct: 177 QREREVLRLIARGYAYKEVAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 235


>gi|215410428|ref|ZP_03419236.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215444983|ref|ZP_03431735.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T85]
 gi|289756930|ref|ZP_06516308.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T85]
 gi|294996325|ref|ZP_06802016.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis 210]
 gi|298524337|ref|ZP_07011746.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           tuberculosis 94_M4241A]
 gi|289712494|gb|EFD76506.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T85]
 gi|298494131|gb|EFI29425.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           tuberculosis 94_M4241A]
 gi|326904936|gb|EGE51869.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis W-148]
          Length = 216

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    LP   +                    G+++  S  
Sbjct: 56  DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR 115

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++ +  A  L+ RE   L       +   I
Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACRQSIPAI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L ++  TV  ++     KL   +R  A+A+A+R   +
Sbjct: 176 AAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215


>gi|213964996|ref|ZP_03393195.1| two component transcriptional regulator, LuxR family
           [Corynebacterium amycolatum SK46]
 gi|213952532|gb|EEB63915.1| two component transcriptional regulator, LuxR family
           [Corynebacterium amycolatum SK46]
          Length = 235

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             + A    T RE   L L   G +++EIA +L ++  TV  ++ +   K  + +R+  +
Sbjct: 167 DPTDAGTQFTPREQEILNLVCQGLSNDEIARRLVVATTTVKTHVKALLTKTGSRSRVDLV 226

Query: 226 AKAIRFGYI 234
             A + G +
Sbjct: 227 IWAAKNGLL 235


>gi|159045214|ref|YP_001534008.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157912974|gb|ABV94407.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 228

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++  +    LT+++   LQL   G  +++IA  L ++  TV A++ +   KL   +R Q
Sbjct: 148 AEEALARLGLLTKQQARILQLICAGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQ 207

Query: 224 AIAKAIRF 231
           A+  A   
Sbjct: 208 AVLIAQEA 215


>gi|32967994|gb|AAP92509.1| transcriptional regulator [Streptomyces vinaceus]
          Length = 236

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 5/137 (3%)

Query: 97  VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156
             E      +           +                 +    L   V        +  
Sbjct: 96  AAERDTDELLSAALAAGVHGYVPLSSPREDFDAAIQAVAAGGGFLPTHVTRRLVRNFH-- 153

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
               +     R +    L+ERE   L L GDG ++ EIA  L +S  TV +++     KL
Sbjct: 154 ---LVPRRTDRPAELELLSEREQQVLLLVGDGRSNREIARTLRVSEATVKSHVSRVLAKL 210

Query: 217 DAVNRIQAIAKAIRFGY 233
           +  +R+ A     R G 
Sbjct: 211 ELRDRVHAAQLVWRLGL 227


>gi|16760019|ref|NP_455636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142210|ref|NP_805552.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213162401|ref|ZP_03348111.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213427737|ref|ZP_03360487.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581810|ref|ZP_03363636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213618652|ref|ZP_03372478.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213646854|ref|ZP_03376907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864885|ref|ZP_03387004.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828614|ref|ZP_06546439.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|291080868|ref|ZP_06537029.2| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25298760|pir||AG0635 probable regulatory protein STY1179 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502313|emb|CAD08266.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137840|gb|AAO69401.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 208

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA+
Sbjct: 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAV 207


>gi|326333266|ref|ZP_08199513.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325948910|gb|EGD41003.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +     ++  +               D       R+     LT RE   L     G ++ 
Sbjct: 124 VHAGHAVVAPSTTRRLLEHVATAPAPDNGRAADIRA----TLTPRELDMLLELATGDSNA 179

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA ++ LS  TV  ++G    KL   +R+QA+  A   G +
Sbjct: 180 EIACRVHLSEATVKTHVGHVLAKLGLRDRVQAVVLAYETGLV 221


>gi|255691480|ref|ZP_05415155.1| transcriptional regulator, LuxR family [Bacteroides finegoldii DSM
           17565]
 gi|260622871|gb|EEX45742.1| transcriptional regulator, LuxR family [Bacteroides finegoldii DSM
           17565]
          Length = 203

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++       L++RE   +     G T++EIAEKL LS+HTV  +  + + KL   +   
Sbjct: 125 EEEDLENQDALSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAG 184

Query: 224 AIAKAIRFGYI 234
               AI    +
Sbjct: 185 LTIYAIVNKLV 195


>gi|150007891|ref|YP_001302634.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256840150|ref|ZP_05545659.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262381608|ref|ZP_06074746.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|149936315|gb|ABR43012.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256739080|gb|EEU52405.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262296785|gb|EEY84715.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
          Length = 109

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L L      A   LT+RE   L L   G+ S+EIA KL LS++TVN +  +   KL+  N
Sbjct: 35  LILASTVILAEPQLTKREKEILILIRQGFLSKEIAYKLNLSIYTVNNHRKNILAKLNVDN 94

Query: 221 RIQAIAKAIRFGYI 234
            I+AI KA  FG +
Sbjct: 95  AIEAINKAENFGIL 108


>gi|148271887|ref|YP_001221448.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829817|emb|CAN00738.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAARNLTE 176
               G+V+  +E       +   A G          +V+ +F               LT 
Sbjct: 108 AGARGFVLKDAEPEEFIQAMRALAEGRAALDGVTTRRVMAEFTRRRAASAVHPGTEVLTP 167

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   ++L GDG +++EI  +L +   TV ++L     KL   +R+Q +    R G +
Sbjct: 168 REQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL 225


>gi|16759521|ref|NP_455138.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142706|ref|NP_806048.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052771|ref|ZP_03345649.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425256|ref|ZP_03358006.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582337|ref|ZP_03364163.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213622215|ref|ZP_03374998.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647052|ref|ZP_03377105.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865277|ref|ZP_03387396.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289823975|ref|ZP_06543574.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25298756|pir||AE0570 probable transcription regulator (FimXZ protein) fimZ [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501813|emb|CAD05031.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138337|gb|AAO69908.1| probable transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 210

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  A    
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208

Query: 233 YI 234
            +
Sbjct: 209 LL 210


>gi|114562693|ref|YP_750206.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333986|gb|ABI71368.1| transcriptional regulator, LuxR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 210

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +  LT RE   LQ    G T+ +IA +L +S  T+  +L  A  K+   +R QAIA A
Sbjct: 144 SEQLTIREREVLQTLLSGSTNLDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 201


>gi|317473872|ref|ZP_07933152.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909949|gb|EFV31623.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 223

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E S L+    G T++EIA +  LS HT+N++  +   KL   N  +A   A++ 
Sbjct: 154 DLLTPAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKA 213

Query: 232 GYI 234
           G +
Sbjct: 214 GIV 216


>gi|301631649|ref|XP_002944911.1| PREDICTED: oxygen regulatory protein nreC-like [Xenopus (Silurana)
           tropicalis]
          Length = 241

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 20/177 (11%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHK 128
                   P+    I       +  +L  +L         +              L    
Sbjct: 64  ARACLADQPLALALIDLHLPDGNGCELIAQLRADDPGLGILVVSAWSSEDAILGALRAGA 123

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN--------LTER 177
            GYV+   + + +   V     G       +    LEL    +++  +        L+ R
Sbjct: 124 TGYVLKERDDVEVQLSVRSVLRGGAPIDPFIARRILELLPTAAASPASTAAPLQGVLSVR 183

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+L  DG ++ EIAE+L LS +TV +++     KL   +R+ A+ +A   G +
Sbjct: 184 EGQILRLVADGLSNREIAEQLFLSRYTVESHVKRVYRKLAVSSRMNAVREARSRGLL 240


>gi|260655833|ref|ZP_05861302.1| response regulator GacA [Jonquetella anthropi E3_33 E1]
 gi|260629449|gb|EEX47643.1| response regulator GacA [Jonquetella anthropi E3_33 E1]
          Length = 217

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 12/197 (6%)

Query: 46  RRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS 105
             +  +  + +       +  +  +      L      +  +       E+  E+     
Sbjct: 22  ASRPDLQVVGSAPDGESGLAVVREQRPDVAVLDMTMPSIGGVECARRLVESFPETK---- 77

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-----AHGACYQVITDF 160
           +           I+  +R+G          ++ L+ A   + E     A G    ++ D+
Sbjct: 78  ILALSMHNDLRFISELLRIGAKGYLLKDCATDELLTAVRTVAEGRLYLAGGVVQLLVEDY 137

Query: 161 LELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           L L +      + +  L+ERE S L L   G TS+ I ++LG+S +TV+ +      KL 
Sbjct: 138 LRLKRAVHDGPARSMVLSEREKSVLALMAQGLTSKAIGDELGISKNTVDTHRRRMMDKLG 197

Query: 218 AVNRIQAIAKAIRFGYI 234
             +  + +  A R   +
Sbjct: 198 CNSVAELLRHAYREELL 214


>gi|221639537|ref|YP_002525799.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|221160318|gb|ACM01298.1| Transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           KD131]
          Length = 206

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 27/209 (12%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L ++      I        F    +      P  +     L+ +     ++         
Sbjct: 9   LSDMKEAFLQIAQA----GF-YVALRLGFYSPEDE-----LNTFPEQFVELYTARGLALQ 58

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHKNGY 131
           D  +    +    + W ++ +   +    +             G    +  R    K  +
Sbjct: 59  DPLMRWTFTNHGALRWSAVDQPDPLGVIARY-----RQYGMRYGATICLAGRGPVPKKSF 113

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            IF       ++  I++       +  +            ++LTE +   L++   G   
Sbjct: 114 GIFARADREFSDAEIVDLRELLTTLHVN----------EPQSLTESQVEVLRMLSTGMRY 163

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +++A  LG+S   V A L  A  +++A  
Sbjct: 164 KQMAYALGISESAVKARLKGAAQRMNAKT 192


>gi|254440333|ref|ZP_05053827.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198255779|gb|EDY80093.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 220

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  A  LTERE   L+   +G +++EIA  L +   TV  ++ +   K+   NR QA   
Sbjct: 138 NPLADKLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALI 197

Query: 228 AIRF 231
               
Sbjct: 198 GREA 201


>gi|297191263|ref|ZP_06908661.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718452|gb|EDY62360.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + K+       LT RE   + L   G  ++EIA ++ +S  TV  +   A  K+ A +R 
Sbjct: 147 IDKELLRRFSALTPRERDVVVLVASGLGNDEIAAQMSVSPFTVKTHAVRAMTKVGARDRA 206

Query: 223 QAIAKAIRFGY 233
           Q ++ A R G 
Sbjct: 207 QLVSFAFRAGL 217


>gi|149915179|ref|ZP_01903707.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b]
 gi|149810900|gb|EDM70739.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b]
          Length = 201

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           L +  +S     LT RE   L+   +G  ++EIA +L +   TV  ++ + + KL A NR
Sbjct: 129 LAEAEASPLDVALTPRELDVLKGLTEGKANKEIARELDIQEVTVKLHVKTLSRKLQARNR 188

Query: 222 IQAIAKAIRFGYI 234
             A       G +
Sbjct: 189 THAAMLGRDLGLV 201


>gi|90426293|ref|YP_534663.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisB18]
 gi|90108307|gb|ABD90344.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 223

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|311067076|ref|YP_003971999.1| two-component hybrid sensor and regulator [Bacillus atrophaeus
           1942]
 gi|310867593|gb|ADP31068.1| two-component hybrid sensor and regulator [Bacillus atrophaeus
           1942]
          Length = 596

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G   + IA +L LS  TV  Y  +   KL   NR +A+ KA   G
Sbjct: 534 GLTKRELEVLNLLSQGIRYKTIASELYLSNGTVRNYASTLYDKLGVKNREEAVQKARDTG 593

Query: 233 YI 234
            +
Sbjct: 594 LL 595


>gi|307944438|ref|ZP_07659778.1| oxygen regulatory protein NreC [Roseibium sp. TrichSKD4]
 gi|307772187|gb|EFO31408.1| oxygen regulatory protein NreC [Roseibium sp. TrichSKD4]
          Length = 216

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 156 VITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            I   L    K +       LTERE   L     G  ++E+A  LG+SV TV ++  +  
Sbjct: 133 AIGPTLVGAAKSAPVDDPYGLTEREKEVLAAIAKGQPNKEVAANLGISVRTVESHRLNLR 192

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            K+   N  Q    A   G +
Sbjct: 193 EKVGCKNAAQLYKVAQELGLL 213


>gi|298387299|ref|ZP_06996852.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
 gi|298259968|gb|EFI02839.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
          Length = 203

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 148 EAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +      ++     L   ++       L++RE   +     G T++EIAE L LS+HTV 
Sbjct: 108 DLDILSKKIHGLLNLASEEEELDNQETLSQREKEIVICVVKGMTNKEIAENLFLSIHTVI 167

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  + + KL   +       AI    +
Sbjct: 168 THRRNISKKLQIHSAAGLTIYAIVNKLV 195


>gi|262365668|gb|ACY62225.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           D182038]
          Length = 160

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 11/154 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLAN-- 143
           I      ES   L  RL   +  F  I   +             G   + ++    A   
Sbjct: 4   IDISMPDESGLSLLKRLRQQIPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCDPAALV 63

Query: 144 EVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           + +   +G    +       L    ++ S    LT RE    QL   G + + +AE+L L
Sbjct: 64  QALRTVNGGGLYLCTDALRALRQMPQQPSKLTILTPREKEIFQLLVKGISVKALAEQLSL 123

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV+ +  +   KL+    I+ +  A++   +
Sbjct: 124 SHKTVHVHRANILSKLNCETTIELVHFALQHQLL 157


>gi|229031002|ref|ZP_04187018.1| Response regulator [Bacillus cereus AH1271]
 gi|228730349|gb|EEL81313.1| Response regulator [Bacillus cereus AH1271]
          Length = 566

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+   +G   + IA KL LS  T+  Y  +   KL   NR +AI  A    
Sbjct: 505 GLTKREMEVLEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNREEAIKMARTEN 564

Query: 233 YI 234
            +
Sbjct: 565 IL 566


>gi|297563788|ref|YP_003682761.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848237|gb|ADH70255.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 232

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +        + +     LT RE   ++    G T+ E+A +L ++V TV  +L S   KL
Sbjct: 154 LLRHFAAAPRSAPGDGGLTVRELDIVRAVARGLTNTEVAGELFVTVSTVKTHLASVQAKL 213

Query: 217 DAVNRIQAIAKAIRFG 232
            A NR++  A A R G
Sbjct: 214 GARNRVEVAAWAYRNG 229


>gi|261341663|ref|ZP_05969521.1| hypothetical protein ENTCAN_08132 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316021|gb|EFC54959.1| transcriptional regulatory protein UhpA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 197

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|167908280|ref|ZP_02495485.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 78

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  +  LT +E   L+L G   +++EIA  + +   TV  +L +   KLDA +R  A+
Sbjct: 6   PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 65

Query: 226 AKAIRFGYI 234
            +A+  G +
Sbjct: 66  RRALVLGLL 74


>gi|124008987|ref|ZP_01693672.1| DNA-binding response regulator, LuxR family, putative [Microscilla
           marina ATCC 23134]
 gi|123985413|gb|EAY25321.1| DNA-binding response regulator, LuxR family, putative [Microscilla
           marina ATCC 23134]
          Length = 222

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L+L  + YT++EIA+KL +S  TV  +  +   K  A N    +  A++   +
Sbjct: 155 TDREMEVLRLLCEQYTAQEIADKLFISRRTVEGHKDNLFAKTGARNLAGLVIYALQNQLV 214


>gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 242

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F  +    + +       ++TD   L ++ S    N T RE S LQL  +G  ++EI
Sbjct: 142 AARFADIDVSKMAKQITEIKSMLTDQNPLNQENSIDIPNFTPREASVLQLVAEGLMNKEI 201

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A KL  S+  V  Y+    +K    +R + +  A+    +
Sbjct: 202 ARKLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHLV 241


>gi|116696371|ref|YP_841947.1| response regulator [Ralstonia eutropha H16]
 gi|113530870|emb|CAJ97217.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 239

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 24/194 (12%)

Query: 65  PNILIETYGDDFLFHF-NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
                 ++              P     +       S  +L   L         +     
Sbjct: 45  YAAGALSFAGTIAQACALVDQGPFDMALVDTSLPDGSGIELIRCLRERAPDLPIVVIASP 104

Query: 124 LG---------FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA 171
                          GY++   + + L   +     G       +    L     +++ A
Sbjct: 105 GTDTEIVGALIAGATGYLLKERDDIELTVCLRGALRGGTPIDPSIAKRLLTTLVPKAAPA 164

Query: 172 RN-----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                        L+ RET  L     G T+ EIA+ L LS  T+ +++ +   KL    
Sbjct: 165 ETRLSPTGSVKPLLSARETEILVFINKGSTNREIADALSLSRLTIESHVKNIYKKLAVKT 224

Query: 221 RIQAIAKAIRFGYI 234
           R QAI +A  +G +
Sbjct: 225 RTQAIFEARAYGVL 238


>gi|325002788|ref|ZP_08123900.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 225

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLG 199
               + A     ++IT+F             L   T RE   L L G G+T+ EIA +L 
Sbjct: 127 AGEALLAPSVTRRLITEFARHGPAAPPGTDRLAVLTGREREVLALVGRGHTNGEIAAQLV 186

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  T   ++G    KL A +R+Q +  A   G +
Sbjct: 187 ISPATARTHVGRLLTKLGARDRVQLVVIAHETGLV 221


>gi|325972442|ref|YP_004248633.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027680|gb|ADY14439.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy]
          Length = 314

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           LT RE     L   G T++EIA +LG+S  TV  ++ +   K+   +RI+ 
Sbjct: 258 LTAREQEMASLIAQGLTNKEIAFRLGISEATVRTHIYNLFQKVGVQSRIEL 308


>gi|311103688|ref|YP_003976541.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758377|gb|ADP13826.1| bacterial regulatory protein, LuxR family protein 2 [Achromobacter
           xylosoxidans A8]
          Length = 83

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 40/78 (51%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L      + A + L+ER+ SCL  A  G TS E A  LG+S  TVN +L +A  KL
Sbjct: 1   MGSALNPSSSPAQAIKPLSERQASCLHWAALGKTSWETARILGVSESTVNFHLCNACEKL 60

Query: 217 DAVNRIQAIAKAIRFGYI 234
               R  A+  A+R G I
Sbjct: 61  GVRGRRAAVVAALRLGLI 78


>gi|325675273|ref|ZP_08154958.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325553979|gb|EGD23656.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 771

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSA 170
           G+  P           +        A +  +               + D L        A
Sbjct: 647 GVVIPALRSNRDEARTLCEGALGARAFDTAVRRGCELTLDEVVDFAVADRLPEAAPTERA 706

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A +LT RE    +L   G T++ IAEKL +S  TV  ++     KL   +R Q  A  + 
Sbjct: 707 ASDLTPREQEVAELVAQGLTNKAIAEKLVISQRTVQGHVEHVLAKLGFNSRTQIAAWVVE 766

Query: 231 FG 232
            G
Sbjct: 767 RG 768


>gi|296104643|ref|YP_003614789.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059102|gb|ADF63840.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 210

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           NLT R+   L +   G  ++ IA +L +S  TV  ++ +   K+   +R++AI
Sbjct: 147 NLTPRQIDVLNMIMRGLPNKRIAAQLSISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|291002981|ref|ZP_06560954.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 213

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 40/79 (50%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           + +  +L   ++++   R LT RE   L+L G+G T+ EI++++ L+  TV  Y+     
Sbjct: 128 EAMLAWLRREQEQADPLRELTAREREVLELIGEGLTNREISQRMFLAEKTVKNYVSQMLS 187

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   +R +A   A     
Sbjct: 188 KLAMRHRSEAAVLATELRL 206


>gi|297562533|ref|YP_003681507.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846981|gb|ADH69001.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 222

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 151 GACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           G   ++I D+          +     LTERE   + L G G ++EEIA  L LS  T   
Sbjct: 130 GITRRLIADYARRPPSAPDPSVRLNGLTEREREVVALVGGGLSNEEIAAHLVLSPATAKT 189

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++  A VKL   +R Q +  A     +
Sbjct: 190 HVSRAMVKLGVRDRAQLVVIAYETALV 216


>gi|172036050|ref|YP_001802551.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171697504|gb|ACB50485.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 224

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE+  L L   G ++ EI ++L LS  T+  Y+ S   K D  NR + +  A+    
Sbjct: 163 LTRRESEVLDLLTMGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDHHL 222

Query: 234 I 234
           +
Sbjct: 223 V 223


>gi|150397367|ref|YP_001327834.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150028882|gb|ABR60999.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 247

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 67/240 (27%), Gaps = 41/240 (17%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD----SGDIPNILIET 71
           +    L  +   +      ++          +++ +     +D +       +       
Sbjct: 8   DTFRTL--MSTLMTFDYVVVFAYRG------KERPLDLYSTFDAEDHVLFVTLYQAGPYL 59

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA--GIAFPV------- 122
             D F  H      P +W+  +       S +               G   PV       
Sbjct: 60  L-DPFY-HAARAPKPGVWRMRELAPDRFFSSEYYRTYYVQTGLAEEVGFFVPVSEQVTVV 117

Query: 123 -----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKK-----RSSA 170
                R      G   F            +  H      +     L   ++         
Sbjct: 118 LSLMRREATGVFGAAEFALLRKAEPLVAALVRHHWAELDRRFDTALARTERGRRKSVHPP 177

Query: 171 AR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           A       NLTERE + ++L   G++SE I  KLG+S  TV  +  +   KL   ++ Q 
Sbjct: 178 ADGVWRHLNLTEREAAIIELVLQGHSSESIGLKLGISTGTVKVHRRNVYRKLGISSQTQL 237


>gi|16763929|ref|NP_459544.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56414302|ref|YP_151377.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161615245|ref|YP_001589210.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167550921|ref|ZP_02344677.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167990544|ref|ZP_02571644.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168818830|ref|ZP_02830830.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|197251803|ref|YP_002145532.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263357|ref|ZP_03163431.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197363222|ref|YP_002142859.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198246048|ref|YP_002214503.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200391104|ref|ZP_03217715.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205351850|ref|YP_002225651.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856027|ref|YP_002242678.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|120173|sp|P26319|FIMZ_SALTY RecName: Full=Fimbriae Z protein
 gi|153968|gb|AAA27065.1| fimbriae Z [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|349137|gb|AAA75422.1| FimZ [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16419060|gb|AAL19503.1| fimbrial protein Z [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56128559|gb|AAV78065.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161364609|gb|ABX68377.1| hypothetical protein SPAB_03014 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197094699|emb|CAR60229.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197215506|gb|ACH52903.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241612|gb|EDY24232.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197940564|gb|ACH77897.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199603549|gb|EDZ02095.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205271631|emb|CAR36457.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205324155|gb|EDZ11994.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330873|gb|EDZ17637.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205344205|gb|EDZ30969.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206707830|emb|CAR32115.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261245828|emb|CBG23626.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267992273|gb|ACY87158.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157157|emb|CBW16641.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911582|dbj|BAJ35556.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084822|emb|CBY94612.1| Transcriptional regulatory protein degU Protease production
           enhancer protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321226131|gb|EFX51182.1| Transcriptional regulator of fimbriae expression FimZ LuxR/UhpA
           family [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|332987498|gb|AEF06481.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 210

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  A    
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208

Query: 233 YI 234
            +
Sbjct: 209 LL 210


>gi|148264823|ref|YP_001231529.1| two component LuxR family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146398323|gb|ABQ26956.1| two component transcriptional regulator, LuxR family [Geobacter
           uraniireducens Rf4]
          Length = 214

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLEL 163
           +   LL    +   +  G          +E L+ A   +            +++      
Sbjct: 81  VLSMLLDRNCVLESLEAGARGYLAKDCAAEELVAAIRTVFAGKPYFCAGATEIMIKGFAP 140

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                  A  LT+RE   L+L  +GY ++EIA  LG+S+  +  +  +   KL   +  Q
Sbjct: 141 GSASQQIAPVLTKREREVLKLTAEGYNTKEIAFTLGVSIKMIEIHRMNIRKKLGLKSIAQ 200

Query: 224 AIAKAIRFGYI 234
               A+R G I
Sbjct: 201 LATYAVRIGLI 211


>gi|330467590|ref|YP_004405333.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810561|gb|AEB44733.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 239

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               + +  +  L+ERE   L LA +  ++ +IA +L +S  TV  ++     KL+AV+R
Sbjct: 146 RGGSRAAPHSVRLSEREHDVLSLAAEALSNSQIARRLYISEGTVKRHMRHVFKKLNAVSR 205

Query: 222 IQAIAKAIRFGYI 234
           I A+ KAI    I
Sbjct: 206 IDAVNKAISAALI 218


>gi|323498768|ref|ZP_08103754.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|323316130|gb|EGA69155.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 211

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+    + 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQL 207


>gi|317055507|ref|YP_004103974.1| LuxR family two component transcriptional regulator [Ruminococcus
           albus 7]
 gi|315447776|gb|ADU21340.1| two component transcriptional regulator, LuxR family [Ruminococcus
           albus 7]
          Length = 209

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +E+E   L+L  +G +++EI+ +L LS  TV  Y+ S   KL   +R Q    
Sbjct: 149 SEKEKEILELVAEGKSNKEISAELFLSEGTVRNYISSLLDKLSLRDRTQLAVF 201


>gi|296126426|ref|YP_003633678.1| LuxR family transcriptional regulator [Brachyspira murdochii DSM
           12563]
 gi|296018242|gb|ADG71479.1| transcriptional regulator, LuxR family [Brachyspira murdochii DSM
           12563]
          Length = 320

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A NLT RE   L    DG T++E++  L +S++TVN ++ +   K    NR++ + K
Sbjct: 261 AVNLTRREREILSYLLDGKTNKEVSLILDISLNTVNNHVANIYEKSGVKNRVELVNK 317


>gi|254504710|ref|ZP_05116861.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222440781|gb|EEE47460.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 248

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT+RE   L     G ++++I E L LS  TVN +L    VKL   NR  A  +A  
Sbjct: 186 QLTQREAEVLIWIAKGKSNKDIGEILNLSPRTVNKHLEQIFVKLGVENRASAAVRAAE 243


>gi|290475594|ref|YP_003468482.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus bovienii SS-2004]
 gi|289174915|emb|CBJ81716.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus bovienii SS-2004]
          Length = 211

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            +L            LT+RE   L+   +G T++EIA+ L +S  TV  +  +   KL +
Sbjct: 133 QYLSTRHLYIDPLSKLTKRELDVLKEISEGMTNKEIADFLFISEETVKVHTRNLLKKLKS 192

Query: 219 VNRIQAIAKAIRF 231
            +R++A    +R 
Sbjct: 193 RSRLEATIIYLRH 205


>gi|262165666|ref|ZP_06033403.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223]
 gi|262025382|gb|EEY44050.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223]
          Length = 222

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 16/124 (12%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------- 169
           +   +  G           + +  A   I+        +  D L    K S         
Sbjct: 91  VLQTLAYGAVGYVAKSCARQQMGEAFAQILRGD---VYLPADILRENVKTSPNHFLRNQT 147

Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                  + LT ++   LQ    G  +++IA  L +S  TV +++ +   KL   NRIQA
Sbjct: 148 GFSAETLQTLTRKQLQVLQFMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQA 207

Query: 225 IAKA 228
           +  A
Sbjct: 208 VLGA 211


>gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 222

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                R S++  LTERE   L+    G T+++IA+ L LS  TVN +L    VKL    R
Sbjct: 149 AAAYTRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETR 208

Query: 222 IQAIAKAI 229
             A + A+
Sbjct: 209 TAATSVAL 216


>gi|196232039|ref|ZP_03130894.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223761|gb|EDY18276.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 1/128 (0%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
           ++     L   A +  P+         ++  +                   + +  ++  
Sbjct: 90  TLEAARALGVQAFLLKPLASKEQLRAAIVIATTICDRQRADAERIDTLSTSLESTRVKTM 149

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +    +  LT RET  L L  +G  + EI  +LGLS  TV  ++     KL   +R  A
Sbjct: 150 PRALG-SYGLTRRETEVLHLLAEGKANAEIGVELGLSPRTVEKHVEHILDKLGVKSRTAA 208

Query: 225 IAKAIRFG 232
                  G
Sbjct: 209 TRLVADAG 216


>gi|254386960|ref|ZP_05002242.1| two-component regulator [Streptomyces sp. Mg1]
 gi|194345787|gb|EDX26753.1| two-component regulator [Streptomyces sp. Mg1]
          Length = 220

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +  AR +TERE   L+L  +G+TS+EI + L +S  TV  +  +   KL   +R
Sbjct: 146 RARTGGALPARPITEREEEILKLVAEGHTSKEIGDFLVISAKTVERHRANLLQKLGLRDR 205

Query: 222 IQAIAKAIRFGYI 234
           ++    AIR G I
Sbjct: 206 LELTRYAIRVGLI 218


>gi|194291238|ref|YP_002007145.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193225073|emb|CAQ71084.1| putative response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 228

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCL 182
                GYV+  +    L   +     G  +        + ++  +      LT RE   L
Sbjct: 113 RAGARGYVLKDAPADELIAAIRSVLAGRVFYSARIARGIAEQSPAAGPLDALTPRERDIL 172

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  G G  ++EIA +LG+SV TV  +  +   KL    R   +  A+ 
Sbjct: 173 RGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVE 220


>gi|29827823|ref|NP_822457.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29604924|dbj|BAC68992.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 226

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  + +   LT+RE + L L  +G ++ +I  ++ LS  TV  ++ +   KL    R+QA
Sbjct: 148 EPAARSLAALTDRERAVLVLIAEGLSNADIGTRMHLSTGTVKDHVSAILTKLKVDGRVQA 207

Query: 225 IAKAIRFGYI 234
              A R G +
Sbjct: 208 ALLAERAGLL 217


>gi|88797548|ref|ZP_01113137.1| two-component system, response regulator [Reinekea sp. MED297]
 gi|88779720|gb|EAR10906.1| two-component system, response regulator [Reinekea sp. MED297]
          Length = 218

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +     LT+++   L+   DG  +++IA  L +S  TV A++ +   KL+ +NR QA
Sbjct: 144 EDIARRINELTDQQLRVLRHLQDGRLNKQIAYDLDISEATVKAHVTAIFRKLNVLNRTQA 203

Query: 225 IAKAIRF 231
           +  A + 
Sbjct: 204 VILANKL 210


>gi|158315625|ref|YP_001508133.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111030|gb|ABW13227.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 217

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLEL--FKKRSSAARN 173
           +    +     GY++  ++   L   +   AHG      +V    L L     R      
Sbjct: 92  SVFAAMCAGARGYLLKGADQDELRRAITAVAHGEAIFGSRVAARVLALLAHPPREVPFPQ 151

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G  +  IA  L +S  TV  ++ +   KL   +R +AI +A   G 
Sbjct: 152 LTDRERQVLDELARGRNNASIARVLNVSTRTVANHVSTIFAKLQLADRAEAIVRAREAGL 211


>gi|311277366|ref|YP_003939597.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
 gi|308746561|gb|ADO46313.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
          Length = 197

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 6/118 (5%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD---FLELF---KKRSS 169
           A I   V          +       L+     +   A  + +     +L      K  + 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVRAVATGGCYLTPDIASKLAAG 133

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               LT RE    +    G   +EIA  LGLS  TV+ +  +   KL   N ++   +
Sbjct: 134 RQDPLTRRERQVAEKLAQGMAVKEIAAVLGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|295134050|ref|YP_003584726.1| two-component response regulator [Zunongwangia profunda SM-A87]
 gi|294982065|gb|ADF52530.1| two-component response regulator [Zunongwangia profunda SM-A87]
          Length = 214

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 143 NEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            ++++  +     + +     L   R ++   LT+RE   LQL    +T++EIA+ L LS
Sbjct: 122 RQILLGENYFSTHIQSILIQSLTNSRKASEIRLTQREKEVLQLIAKEHTTQEIADMLFLS 181

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            HT+ +Y  +   KL+  N       AI    +
Sbjct: 182 KHTIESYRKNLINKLEVRNLAGLTRYAIEHNMV 214


>gi|254461366|ref|ZP_05074782.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium HTCC2083]
 gi|255262610|ref|ZP_05341952.1| DNA-binding response regulator, LuxR family [Thalassiobium sp.
           R2A62]
 gi|206677955|gb|EDZ42442.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium HTCC2083]
 gi|255104945|gb|EET47619.1| DNA-binding response regulator, LuxR family [Thalassiobium sp.
           R2A62]
          Length = 216

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 48/99 (48%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G   FT     +   +   A  A  Q++  FL++ + +S     LT+RE + L+    G
Sbjct: 104 AGAAGFTPRNGPVEGLLDTCAAVAAGQMVFPFLDVRELQSDPIHQLTKREKALLEALSRG 163

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            ++ ++A +  +S +TV  +L +   KL   +R QA+A 
Sbjct: 164 LSNRQLAAEFEISANTVKFHLSNLYEKLSVTSRTQAVAF 202


>gi|254410670|ref|ZP_05024449.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182876|gb|EDX77861.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 216

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L L   G ++ EI  KL LS  T+  Y+ S   K +  NR + +  A+    
Sbjct: 155 LTQREQQVLDLLTTGLSNSEIGNKLHLSPRTIEKYVSSLLRKTETSNRAEIVRFALENHL 214

Query: 234 I 234
           +
Sbjct: 215 V 215


>gi|124005623|ref|ZP_01690462.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
 gi|123988691|gb|EAY28297.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
          Length = 222

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           T RE   L+L    YT++EIA++L +S+HTV  +      K    N +  + +A++ 
Sbjct: 160 TPREQEVLELILKEYTTQEIADRLFVSIHTVETHRKKLFNKFGVKNVVGLVVRALQM 216


>gi|118591588|ref|ZP_01548985.1| probable transcriptional regulator protein, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118435916|gb|EAV42560.1| probable transcriptional regulator protein, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 239

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A         +   +  +    LT+RET  L L  +GY ++ IA KL LS HT+  ++  
Sbjct: 151 AGAAPALQLRKPHGRTKNQFSKLTKRETEVLCLISEGYQNKNIANKLSLSEHTIKLHIHH 210

Query: 212 ATVKLDAVNRIQAIAK 227
              KL   NR +A A 
Sbjct: 211 IISKLGVSNRTEAAAI 226


>gi|73538297|ref|YP_298664.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72121634|gb|AAZ63820.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 232

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 1/114 (0%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERET 179
           P       NGYV  T E   +   V     G       D         +    +L+++E 
Sbjct: 116 PRARQAGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRADGVDETRRLGSLSDKEL 175

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             +Q+   G ++++I E L +S  TV+ +      KL A + +  I  A R   
Sbjct: 176 VIMQMLAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVIDFARRHHI 229


>gi|332306859|ref|YP_004434710.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174188|gb|AEE23442.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 214

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L     +    L+ERE     +   G    +IA+ L +S  TVN +      KL+    
Sbjct: 137 ALDFTDGNPFECLSERELEITLMLTKGSKVPDIAKFLNISAKTVNTHRYRMFEKLNVSTD 196

Query: 222 IQAIAKAIRFGYI 234
           ++    A+R   I
Sbjct: 197 VELTHLALRHKLI 209


>gi|300783580|ref|YP_003763871.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299793094|gb|ADJ43469.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 427

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 30/69 (43%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                  A   L  RE   L     G  + +IAE+L LS HTV  ++ +   KLD  +R 
Sbjct: 349 AEPPELRALDRLNPRELEVLSGISQGLRNRQIAEQLQLSEHTVKFHVRNILDKLDVSSRG 408

Query: 223 QAIAKAIRF 231
           +A A A   
Sbjct: 409 EAAALARDL 417


>gi|299134770|ref|ZP_07027962.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
 gi|298590580|gb|EFI50783.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
          Length = 210

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 48/160 (30%), Gaps = 12/160 (7%)

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTS 136
           P     +       S   L   +   +     I   +                GYV   S
Sbjct: 46  PCDVVLLDLSMPGRSGIALLTDVVAKIGSGRVIVLSMHDEHQYVIESLKAGAAGYVTKNS 105

Query: 137 EFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
               L   +   A+                 +      R LT RE     L  DG    +
Sbjct: 106 ASQQLIQAIRKVANDEMFISATAAQSAALKVQPEDEPHRRLTPREREIFDLLVDGRKISD 165

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IA KL LSV TV+ +  +  +K DA   +  +  A+R G 
Sbjct: 166 IARKLDLSVKTVSTHKTNILLKFDAATVVDLVHYAMRHGL 205


>gi|196230839|ref|ZP_03129700.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225180|gb|EDY19689.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 221

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +    LE+F K +  AR   LT RE   L++   G T +E A  L +S +T + Y+
Sbjct: 132 INPTIARRVLEMFSKANPPARDYGLTPREQEILEVLVQGKTIKEAAAALKISYYTADEYI 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   KL   +R  A+AKA+  G +
Sbjct: 192 RSVYDKLQVRSRSSAVAKAVSEGLV 216


>gi|90420412|ref|ZP_01228319.1| two-component response regulator, possible glycerol metabolism
           activator [Aurantimonas manganoxydans SI85-9A1]
 gi|90335140|gb|EAS48893.1| two-component response regulator, possible glycerol metabolism
           activator [Aurantimonas manganoxydans SI85-9A1]
          Length = 227

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 9/141 (6%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
            +   SV +               L    +G++  +S F  +     I A  A    +  
Sbjct: 81  RADHPSVPIAIVSGSEDAPIVARALDLGASGFIPKSSGFAEI--REAILALLAGEVFLPP 138

Query: 160 FLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            + L  +R           R LT ++T  L + G G  +++IA +LG+S  T+ A++ + 
Sbjct: 139 DISLESERDPEVTELIQRIRTLTPQQTRVLTMLGRGLLNKQIAYELGISEATIKAHVSAV 198

Query: 213 TVKLDAVNRIQAIAKAIRFGY 233
            +KL   +R QA+ +  R G 
Sbjct: 199 LLKLGVDSRTQAVIRLSRLGL 219


>gi|86750958|ref|YP_487454.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86573986|gb|ABD08543.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 209

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                LT RE   L+L   G T++E   +LG+S  T+  +  +   KL A N    +  
Sbjct: 144 PGKEPLTLREREVLELFASGNTNKEAGRQLGISPRTIEYHRANIMKKLGARNATDLVRI 202


>gi|32170705|dbj|BAC78370.1| putative two-component system response regulator [Streptomyces sp.
           WA46]
          Length = 222

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            + ++               V +   E  +        LT+RE   L   G G+T+ EIA
Sbjct: 121 GDAVIAPALTRRLLDEFAQYVPSHRTEPSED--PRLTALTDREREILVAIGKGWTNGEIA 178

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +  LS  TV  ++G    K+ A +RIQA+  A   G 
Sbjct: 179 ARFVLSESTVKTHVGRVLTKIGARDRIQAVIFAYDHGL 216


>gi|300785449|ref|YP_003765740.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794963|gb|ADJ45338.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 234

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                ++T+RE   L L  +G T+ EIA +L ++  T   ++G+   KL+A +R+  +  
Sbjct: 164 PDPLASITDRERQVLALVAEGLTNAEIARRLHIAPGTAKTHVGNLLTKLNARDRVHLVIH 223

Query: 228 AIRF 231
           A R 
Sbjct: 224 AYRA 227


>gi|312196796|ref|YP_004016857.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228132|gb|ADP80987.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 221

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L            LT++E   L L  +G T+ +IA ++ L+  TV  Y+ S   KL   +
Sbjct: 149 LRQGPAEDERLAGLTDQERRILALIAEGLTNRQIANRMYLAEKTVKNYVSSMLSKLGLES 208

Query: 221 RIQAIAKAIRFG 232
           R QA   A + G
Sbjct: 209 RTQAAVFATKLG 220


>gi|229542625|ref|ZP_04431685.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229327045|gb|EEN92720.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 218

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 163 LFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           L  +      +L   TERE   + L   G++++EIA+ L +S  TV  Y+ S   K    
Sbjct: 138 LSGREPEPKIDLKKFTEREREIMSLIAKGFSNKEIAKTLYISEGTVANYITSIFGKTGLE 197

Query: 220 NRIQAIAK 227
           +R Q    
Sbjct: 198 HRTQIAVY 205


>gi|254444769|ref|ZP_05058245.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259077|gb|EDY83385.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 211

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RET  LQ+ G+GY+S+EIA    LSV T++A+  +   KL+          A++   
Sbjct: 148 LTPRETDVLQMVGEGYSSKEIARSFNLSVRTIDAHRSNIMRKLNLRGATDMTRLAVKLKL 207

Query: 234 I 234
           +
Sbjct: 208 V 208


>gi|189468407|ref|ZP_03017192.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM
           17393]
 gi|189436671|gb|EDV05656.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM
           17393]
          Length = 209

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L+ RE   L L   G  ++EIA+KL +S+ TV ++  + T KL   +       A+  
Sbjct: 142 HDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVAGLTIYAVMH 201

Query: 232 GYI 234
           GY+
Sbjct: 202 GYV 204


>gi|52142219|ref|YP_084610.1| response regulator [Bacillus cereus E33L]
 gi|51975688|gb|AAU17238.1| response regulator [Bacillus cereus E33L]
          Length = 597

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+   +G   + IA KL LS  T+  Y  +   KL   NR +AI  A    
Sbjct: 536 GLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTEN 595

Query: 233 YI 234
            +
Sbjct: 596 IL 597


>gi|94310139|ref|YP_583349.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93353991|gb|ABF08080.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 210

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTER 177
            P+ +   K G + F  E     +E+         +  TD     ++R++      LT R
Sbjct: 96  VPMAVSTMKRGAIDFI-EKPFDESELRSLVERMLQKARTDHSAAREQRAAKDLLSKLTTR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 EQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 208


>gi|322433940|ref|YP_004216152.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161667|gb|ADW67372.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 190

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 + +A    ++ +   D     +  S+ A  LT+RE   LQ AG+G +S EIA +
Sbjct: 94  DRPASELADAVRRVHRGLRVVDPALATEAWSAEADPLTDRERQILQRAGEGRSSGEIAGE 153

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  YL  A  KL A NR+ A   A   G++
Sbjct: 154 LRLSEGTVRNYLSEAISKLGAANRVDAARIARAKGWL 190


>gi|172039771|ref|YP_001799485.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851075|emb|CAQ04051.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 248

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                LT RE   L+L   GYT +E+AE+L +SV TV  ++ +   K    NR
Sbjct: 184 PNLDELTPREHEVLRLLARGYTYKEMAERLFISVKTVETHVSNILRKTQQTNR 236


>gi|170767648|ref|ZP_02902101.1| fimbriae Z protein [Escherichia albertii TW07627]
 gi|170123136|gb|EDS92067.1| fimbriae Z protein [Escherichia albertii TW07627]
          Length = 210

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE + L+   +G +++EIA +L LS  TV+A+  +   KL   + ++ I  A  + 
Sbjct: 149 PLTNRELTILRYLVNGLSNKEIAGQLLLSNKTVSAHKSNIYSKLGLHSIVELINYARLYE 208

Query: 233 YI 234
            I
Sbjct: 209 LI 210


>gi|134100027|ref|YP_001105688.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912650|emb|CAM02763.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 40/79 (50%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           + +  +L   ++++   R LT RE   L+L G+G T+ EI++++ L+  TV  Y+     
Sbjct: 132 EAMLAWLRREQEQADPLRELTAREREVLELIGEGLTNREISQRMFLAEKTVKNYVSQMLS 191

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   +R +A   A     
Sbjct: 192 KLAMRHRSEAAVLATELRL 210


>gi|87199258|ref|YP_496515.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134939|gb|ABD25681.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 208

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L L          L  RE     L   G  + +I  +LG+   TV  YL +   KL   N
Sbjct: 135 LSLRPDSQGPLAKLNPRERKIAALVARGMRNRDIGAELGIGEGTVKVYLHTMYQKLGIDN 194

Query: 221 RIQAIAKAI 229
           R +    A+
Sbjct: 195 RTELALLAV 203


>gi|307326345|ref|ZP_07605541.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888008|gb|EFN18998.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 228

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAE 196
                           +    L  +  R  AA     LT RE    +L   G T++EI  
Sbjct: 128 EAVRSAARGGALVSPAITVRLLRQWASRPGAATGANPLTGRELDVARLVAVGRTNQEICA 187

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L LS+ TV  +L +   KL   NR++  A A   G
Sbjct: 188 ELHLSLSTVKTHLSNIQTKLAVRNRVEIAAWAWDTG 223


>gi|298247840|ref|ZP_06971645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297550499|gb|EFH84365.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1029

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 148  EAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              H       +           A+    +L+ +E   L+L   G ++ +IA +L +SV+T
Sbjct: 940  ALHLLNAFAPSSPTSTQPSTPGASLLLESLSPQEERVLRLLASGNSNADIARELVVSVNT 999

Query: 205  VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +   L S   KL+  NR++A   A + G +
Sbjct: 1000 IRTQLQSVYRKLNVSNRVEASNTARQLGLV 1029


>gi|171317077|ref|ZP_02906281.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171097778|gb|EDT42602.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 204

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 101 SGQLSVRLEGGLLPFAGIA---FPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156
                      +L F+G +   F +R      NGYV  + +   + +       G     
Sbjct: 66  QRVRIKDATVKILVFSGYSAELFALRCHAAGANGYVNKSEDVTHVLSAANAVLAGFHCFP 125

Query: 157 IT-DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +  + +       +A   L+ERE + L+    G +++EI + L LS  T++ +  +   K
Sbjct: 126 LDINAMASGSGPHAAFAMLSERELTVLRYLAKGLSNKEIGDSLSLSNKTISTHKANILAK 185

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   N +   A A     I
Sbjct: 186 LGFTNVVDLAAFAKAHHLI 204


>gi|134098494|ref|YP_001104155.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003289|ref|ZP_06561262.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911117|emb|CAM01230.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 235

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 17/139 (12%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACY-----------QV 156
              + I   V          +               E++   H               ++
Sbjct: 79  GQTSVIMLTVHDLDEYVYAALRAGASGFLLKDAPPEELVRAVHTVAAGDALLAPRVTRRL 138

Query: 157 ITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +  F  L  + +      LT+RE   L     G ++ EIA  LGL+  TV ++L     K
Sbjct: 139 LQRFASLGVRDAGTELSGLTDRERDVLLEVAKGGSNAEIARNLGLAELTVKSHLYHVMQK 198

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R Q +  A   G +
Sbjct: 199 LHLNSRTQLVITAYETGLV 217


>gi|326792209|ref|YP_004310030.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM
           5427]
 gi|326542973|gb|ADZ84832.1| two component transcriptional regulator, LuxR family [Clostridium
           lentocellum DSM 5427]
          Length = 210

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           TERE    ++  DG+T+++IA+ L +S  TV  Y+ +   K    NR++A 
Sbjct: 153 TEREVQIAEMMKDGFTNKQIAKTLYISEGTVKNYVSNIYAKTQTENRVEAA 203


>gi|290511715|ref|ZP_06551083.1| two-component system, NarL family, uhpT operon response regulator
           UhpA [Klebsiella sp. 1_1_55]
 gi|289775505|gb|EFD83505.1| two-component system, NarL family, uhpT operon response regulator
           UhpA [Klebsiella sp. 1_1_55]
          Length = 197

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 6/118 (5%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQ--VITDFLELFKKRSS 169
           A I   V          +       L+     + +I A                 K  + 
Sbjct: 74  ATIMLSVHDSPALIEQALNAGARGFLSKRCSPDELIAAVRTVAAGGCYLTPDIAMKLAAG 133

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   +
Sbjct: 134 RQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELARR 191


>gi|295700944|ref|YP_003608837.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440157|gb|ADG19326.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 218

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQL 184
                 ++FL                +  D      +R+S+A      +LT RE   + L
Sbjct: 103 AMKAGATDFLAKPFRDQDMLDAVDQALAADEKRRNTERASSALRRCYESLTPREREVMAL 162

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              G  +++IA ++GLS  TV  + G A  K++A      + KA   G 
Sbjct: 163 VASGLRNKQIAAEMGLSEITVKIHRGQAMRKMEASTLADFVLKAKALGI 211


>gi|302524582|ref|ZP_07276924.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302433477|gb|EFL05293.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 215

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                L  +G              V   ++     +  +  AH    ++  +        
Sbjct: 91  ERALGLGASGFLLKAGDPRELLAGVHAVADGAAFLSPKV--AHRVITRLSGNRFSRAATA 148

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LT RE   L L  +G ++ +IA ++ +   TV A++ +   +LD  NR+QA   
Sbjct: 149 RERVSVLTNREREVLVLLAEGLSNADIAARMFVVEGTVKAHVSTILTRLDVRNRVQAAIT 208

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 209 AFEAGLV 215


>gi|171914538|ref|ZP_02930008.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 236

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +     + +       A   L+ RET  LQL  +G  ++E AE L +SV TV  +  
Sbjct: 134 RRNHHAQKAYNQGDLPSRKAPSRLSSRETEVLQLIAEGKANKETAEILHISVKTVEKHRQ 193

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   KL+  +       AI  G I
Sbjct: 194 SLMEKLNIHDTASLTRHAIATGII 217


>gi|170782950|ref|YP_001711284.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157520|emb|CAQ02714.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 234

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 38/99 (38%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             E +     +           +                +T+RE+  L L   G +++E+
Sbjct: 122 ARELVEALERIHAGEELFNQAPLRAASAPSLDWPGKREGITDRESEILALITQGKSNQEV 181

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A    LS +TV +Y+ S   K+   +R QA+   +  G+
Sbjct: 182 AALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHGF 220


>gi|303256121|ref|ZP_07342138.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|302861091|gb|EFL84165.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
          Length = 215

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           I EA           LE  ++   A ++LT RE    +LA  G +++EIA +L ++V TV
Sbjct: 126 IEEACRLSLDNFGASLE-DREVIKAFKSLTPREKEIFELAAGGKSNKEIAAELDIAVATV 184

Query: 206 NAYLGSATVKLDAVNRIQAIAK 227
             +  +A  K+   + I+A+ K
Sbjct: 185 KMHRANAFEKMSVHSSIEALHK 206


>gi|288958810|ref|YP_003449151.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911118|dbj|BAI72607.1| two-component response regulator [Azospirillum sp. B510]
          Length = 223

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT R+   L    DG ++++IA +LGL+  TV  ++ +    L   NR QA   A  
Sbjct: 163 GDQLTPRQRDVLVRLRDGKSNKQIAHELGLTEGTVKVHVTAILRHLGVRNRTQAALTAQS 222

Query: 231 F 231
            
Sbjct: 223 L 223


>gi|253575444|ref|ZP_04852781.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845091|gb|EES73102.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 201

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERET  L+L+  G ++ EIAE L L+  TV  YL  A  KL    R QA  +A   G
Sbjct: 140 PLTERETEVLRLSHAGRSTREIAETLFLTEGTVRNYLSLAIQKLGVETRQQATERAKERG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|240140620|ref|YP_002965100.1| putative transcriptional regulator, PAS domain S-box
           [Methylobacterium extorquens AM1]
 gi|240010597|gb|ACS41823.1| putative transcriptional regulator, PAS domain S-box
           [Methylobacterium extorquens AM1]
          Length = 500

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLG 199
           + +A    + +I   L L +              LT RE   L     G T  EIA +LG
Sbjct: 393 MADASWFSHGIIEK-LALMRNPPPPGKPAALVEKLTRRERDLLLGICKGATDSEIAAELG 451

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LS+ TV  +L S   K+    R   +  A   G 
Sbjct: 452 LSLSTVRNHLASLYRKIGVNRRSAVVVWARERGI 485


>gi|257067834|ref|YP_003154089.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558652|gb|ACU84499.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 211

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 4/112 (3%)

Query: 125 GFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
              + G   F  +   +    + I   H    + +   L         +  LT +ET  L
Sbjct: 102 RTMEAGAHGFMVKDTPVERLVDAIRRVH-QGLRAVDPELAAQSLAVGPS-PLTAKETEVL 159

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Q    G ++ +IA+ L LS  TV  +L +   KL   NR +A+  A   G+I
Sbjct: 160 QTVATGASTAQIAQTLFLSEGTVRNHLSAVIGKLGVTNRAEAVRAASDNGWI 211


>gi|163853215|ref|YP_001641258.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163664820|gb|ABY32187.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 500

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLG 199
           + +A    + +I   L L +              LT RE   L     G T  EIA +LG
Sbjct: 393 MADASWFSHGIIEK-LALMRNPPPPGKPAALVEKLTRRERDLLLGICKGATDSEIAAELG 451

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LS+ TV  +L S   K+    R   +  A   G 
Sbjct: 452 LSLSTVRNHLASLYRKIGVNRRSAVVVWARERGI 485


>gi|149275963|ref|ZP_01882108.1| response regulator [Pedobacter sp. BAL39]
 gi|149233391|gb|EDM38765.1| response regulator [Pedobacter sp. BAL39]
          Length = 220

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           AA +LT+RE   L+L  D  T+ EIAE L +S+ TV+ +  +  VK  A N    +  A 
Sbjct: 152 AASSLTQREKEILRLICDECTTAEIAEALSISLRTVDGHRNNLLVKTGAKNVAGLVVFAF 211

Query: 230 RFGYI 234
           +   I
Sbjct: 212 KNKLI 216


>gi|120601631|ref|YP_966031.1| two component LuxR family transcriptional regulator [Desulfovibrio
           vulgaris DP4]
 gi|120561860|gb|ABM27604.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris DP4]
          Length = 235

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +R+     LT RE   L    +G+ + EIA+ L +S  TV  +  +   KL   + 
Sbjct: 152 ALEDRRTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSA 211

Query: 222 IQAIAKAIRFGY 233
            +  A A R G 
Sbjct: 212 AEVRAFAQRQGL 223


>gi|312141565|ref|YP_004008901.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311890904|emb|CBH50223.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 283

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAE 196
             +               V      L    S+ A   L+ RE   L     G  + EIAE
Sbjct: 185 RSIADRLDDAALTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAE 244

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +LGL + T+ +Y+ +   KL+  +R +A+ +A R G I
Sbjct: 245 RLGLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282


>gi|310643281|ref|YP_003948039.1| transcriptional regulatory protein degu (protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
 gi|309248231|gb|ADO57798.1| Transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
          Length = 216

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L++RE   L L   GY ++E+AEKL +SV TV A       KL+  +R + +  A+
Sbjct: 150 PYEILSKRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLKSRPELVQYAL 209

Query: 230 RFGYI 234
           +   +
Sbjct: 210 KKKML 214


>gi|298293707|ref|YP_003695646.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930218|gb|ADH91027.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 218

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTE 176
            P+ +   K G V F ++     ++ +++A  +  ++  +  E  K  S        LT 
Sbjct: 99  IPMTVRAMKAGAVDFLTK--PFRDQDMLDAVASAIRLDRERREARKAVSGVQNLYETLTP 156

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   ++L   G  ++++A ++GLS  TV  + G    K+ A +  + +  A   G 
Sbjct: 157 REKQVMELVTSGLMNKQVAAEVGLSEITVKIHRGHVMRKMGAHSLAELVRMAETLGL 213


>gi|229822369|ref|YP_002883895.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568282|gb|ACQ82133.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 221

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              +VI +F      RS+    L   + RE   ++L   G ++ EIA  L L   TV ++
Sbjct: 130 LTRRVIDEFARRRAPRSADPDALGLLSPRELEIVELLSRGSSNAEIAAALVLEPSTVKSH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     K    +R+Q +  A   G +
Sbjct: 190 LSRIMTKTATRDRVQLVVWAFTHGVV 215


>gi|149920858|ref|ZP_01909320.1| hypothetical protein PPSIR1_38636 [Plesiocystis pacifica SIR-1]
 gi|149818257|gb|EDM77710.1| hypothetical protein PPSIR1_38636 [Plesiocystis pacifica SIR-1]
          Length = 268

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A+ L+ R+    QL  +G T+  IAE LG+S  TV ++L     +L   +R       + 
Sbjct: 201 AQPLSPRQLEVSQLVANGMTNAAIAEALGISPRTVTSHLDHIYGRLGIGSRAALTRWIVE 260

Query: 231 FGY 233
            G 
Sbjct: 261 RGL 263


>gi|126667193|ref|ZP_01738167.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter sp. ELB17]
 gi|126628349|gb|EAZ98972.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter sp. ELB17]
          Length = 221

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           ++ +D  +  +K +    +LT ++   L +  +G  +++IA  L +S  T+ A++ +   
Sbjct: 137 RMHSDATDFSEKLA----SLTPQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFR 192

Query: 215 KLDAVNRIQAIAKAIRF 231
           KL   NR QA+  AI+ 
Sbjct: 193 KLGVRNRTQAV-IAIQQ 208


>gi|238786097|ref|ZP_04630054.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
 gi|238713004|gb|EEQ05059.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
          Length = 209

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 13/160 (8%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      ES   L  RL   +  F  I   +             G   + ++   
Sbjct: 48  VHVAVMDISMPDESGLSLLKRLRQKMPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCG 107

Query: 141 LANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              E++                    L    ++      LT RE    QL  +G + + I
Sbjct: 108 PD-ELVQALRTVNGGGLYLCSDALRALRHMPQQPQQLAVLTPREKEIFQLLINGISVKSI 166

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+L LS  TV+ +  +   KL     ++ +  A++   +
Sbjct: 167 AEQLRLSHKTVHVHRANILGKLQCETTVELVHFALQHQLL 206


>gi|93005507|ref|YP_579944.1| two component LuxR family transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92393185|gb|ABE74460.1| two component transcriptional regulator, LuxR family [Psychrobacter
           cryohalolentis K5]
          Length = 211

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L    +S    L++RE     +  +  + ++IA++L +SV T+N Y      K++  + +
Sbjct: 138 LSDNANSPFDLLSDREKQVAMMVVNCQSPQQIADQLFVSVKTINTYRYRIYEKVNVDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR G I
Sbjct: 198 KLTHLAIRHGLI 209


>gi|307330023|ref|ZP_07609174.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884284|gb|EFN15319.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 216

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LT 175
           VR G           + ++ A   +          + + L      S +A        LT
Sbjct: 96  VRAGARGYLLKGAGRDEILRALHTVARGGAVFSPRMAERLGALVGASGSASAKEAFPTLT 155

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE   L L   G    +IA++L ++  TV  ++GS   KL   +R QAI +A + G 
Sbjct: 156 AREREVLDLLAAGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRARQAGL 213


>gi|288926651|ref|ZP_06420565.1| transcriptional regulator [Prevotella buccae D17]
 gi|288336561|gb|EFC74933.1| transcriptional regulator [Prevotella buccae D17]
          Length = 213

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             C ++    L   +        LT+ ET  L+    G+T+ EIAE+   S HTVN +  
Sbjct: 123 FICRRMTEMLLAPRQNEEEERVKLTKTETEVLKEIALGFTTREIAERRFSSFHTVNTHRK 182

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL      +A   A+R G +
Sbjct: 183 NIFRKLGVNTVHEATKYALRAGLV 206


>gi|290957607|ref|YP_003488789.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647133|emb|CBG70232.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 204

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           DI  ++    GD+ L         +    +  E    +  + +  L   L     +    
Sbjct: 29  DIEVVVQVARGDEVLAAAR--AHAVDVALLDIEMPGATGIEAAAELHRALPVVKLVVLTT 86

Query: 123 RLGFHKNGYVIFTSEF----LMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTE 176
                     +                + +A       + + D        +  A  LT+
Sbjct: 87  FGRPGYLRSAMEAGADAFLVKDAPAAQLADAVRRVLAGERVIDPTLAAAALAGGANPLTD 146

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+ A DG T+ E+AE L LS  TV  YL +A  KL   NR +A+  A   G++
Sbjct: 147 REREVLRAAADGSTNAELAEALHLSPGTVRNYLSTAIQKLAVRNRTEAVRTAREKGWL 204


>gi|262201684|ref|YP_003272892.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262085031|gb|ACY20999.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 231

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 3/123 (2%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
                  +   +      +          + +  +   A                     
Sbjct: 111 RAGARGYVTKTISGADLADAVRRVADGDAVFSPRL---AGFVLDSFTGKSSAPEPPLDPE 167

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L+L   GYT  EIAE+L +S+ TV  +  +   K    NR      A  
Sbjct: 168 LDSLTRRELEVLRLLARGYTYREIAEELFISIKTVETHASNVLRKTQQSNRNALTRWAAT 227

Query: 231 FGY 233
              
Sbjct: 228 RHI 230


>gi|213026240|ref|ZP_03340687.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 104

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 44/91 (48%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
             +  ++E  + A      +     +  ++ +  A  LT +E   + +  +G +++ IA 
Sbjct: 2   RDIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLASILTAKEREIVGMVCEGASNKLIAR 61

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +L +S+ TV  +L +   K + +NR + +++
Sbjct: 62  QLNISLSTVKTHLRNIFAKTEVINRTELVSR 92


>gi|331695485|ref|YP_004331724.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950174|gb|AEA23871.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 244

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 37/79 (46%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           V+    +         + LTERE   L+L   G ++ EIA +L +S  TV  ++ +   K
Sbjct: 166 VVDVLRDEDGGARPRGQMLTERENQVLKLLAVGMSNREIAVRLLISEATVKFHVRNLREK 225

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           LD   R + +  A R G +
Sbjct: 226 LDVRRRTEIVYTATRQGMV 244


>gi|297160246|gb|ADI09958.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 190

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + LT RE   L LA  G  S +IA +L LSV TV  YL S   KL+A NR+ AI  A   
Sbjct: 128 QPLTPRELEVLLLASQGEGSAQIAARLYLSVGTVRNYLTSVVTKLNARNRVDAIRIAREA 187

Query: 232 GYI 234
           G++
Sbjct: 188 GWL 190


>gi|293413618|ref|ZP_06656267.1| two-component system [Escherichia coli B185]
 gi|291433676|gb|EFF06649.1| two-component system [Escherichia coli B185]
          Length = 209

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147
           I      E+   L  RL      F  I   +          +       L      E ++
Sbjct: 53  IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112

Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +A        H  C   I   L    + + A   LT RE     L   G + +EIA KL 
Sbjct: 113 QAVRSVGLGGHYLCADAIL-ALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLA 171

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV+ +  +   KL+  + I+ +  A+    +
Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|291300276|ref|YP_003511554.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM
            44728]
 gi|290569496|gb|ADD42461.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
            DSM 44728]
          Length = 1013

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 1/140 (0%)

Query: 95   ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGAC 153
            +  + +SGQ +  L  G    A +    R            +    L    + E      
Sbjct: 872  DAPLRTSGQAADALLRGRGQAADVPLRARGQASDAPLREAATIAAKLGARPLAERVARLA 931

Query: 154  YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
             QV     E  +      R LT RE   L+L   G ++ +IA +L +SV T   ++    
Sbjct: 932  AQVGIAVGEAPQANPGPGRGLTAREVDVLRLLAKGLSNRQIAGELFISVSTAGVHVSRIL 991

Query: 214  VKLDAVNRIQAIAKAIRFGY 233
             KL+  +R +A A A R  +
Sbjct: 992  AKLEVASRGEAAALAHREQW 1011


>gi|269836626|ref|YP_003318854.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
            DSM 20745]
 gi|269785889|gb|ACZ38032.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
            DSM 20745]
          Length = 1034

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 40/82 (48%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
               ++     L  + ++    L+ RE   L+L  +G T  E+AE+L +S  TV  +L S 
Sbjct: 952  AKPLLAVIDHLEPRPTAVPGGLSAREIEVLRLVAEGLTDAEVAERLSISPRTVGGHLQSI 1011

Query: 213  TVKLDAVNRIQAIAKAIRFGYI 234
              KL   +R  A + A +FG +
Sbjct: 1012 YNKLGISSRTAATSFAHKFGLV 1033


>gi|189461961|ref|ZP_03010746.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136]
 gi|189431355|gb|EDV00340.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136]
          Length = 195

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              +  +      +L+ RE   L L   G  ++EIA+KL +S+ TV ++  + T KL   
Sbjct: 116 HHPVSPQEMQQEHDLSPREIEVLTLITKGLINKEIADKLNISLTTVISHRKNITEKLGIK 175

Query: 220 NRIQAIAKAIRFGYI 234
           +       A+  GY+
Sbjct: 176 SVSGLAIYAVMHGYV 190


>gi|111020362|ref|YP_703334.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110819892|gb|ABG95176.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1094

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%)

Query: 135  TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              E      E +       + +     +      +A   LT RE    +L  +G T++EI
Sbjct: 990  AFEKESRVGERLEHLASIEFALQKRTSKPAPATPAAKVKLTPREKEVGKLVAEGLTNKEI 1049

Query: 195  AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            AE+L +S  T   ++     K    +R Q  A   R
Sbjct: 1050 AERLVISPRTAEGHVDRILTKTGHRSRAQLAAWIAR 1085


>gi|332558549|ref|ZP_08412871.1| Transcriptional regulator, LuxR family protein [Rhodobacter
           sphaeroides WS8N]
 gi|332276261|gb|EGJ21576.1| Transcriptional regulator, LuxR family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 200

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 27/209 (12%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L ++      I        F    +      P  +     L+ +     ++         
Sbjct: 3   LSDMKEAFLQIAQA----GF-YVALRLGFYSPEDE-----LNTFPEQFVELYTARGLALQ 52

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHKNGY 131
           D  +    +    + W ++ +   +    +             G    +  R    K  +
Sbjct: 53  DPLMRWTFTNHGALRWSAVDQPDPLGVIARY-----RQYGMRYGATICLAGRGPVPKKSF 107

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            IF       ++  I++       +  +            ++LTE +   L++   G   
Sbjct: 108 GIFARADREFSDAEIVDLRELLTTLHVN----------EPQSLTESQVEVLRMLSTGMRY 157

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +++A  LG+S   V A L  A  +++A  
Sbjct: 158 KQMAYALGISESAVKARLKGAAQRMNAKT 186


>gi|313158585|gb|EFR57979.1| transcriptional regulator, LuxR family [Alistipes sp. HGB5]
          Length = 195

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 7/138 (5%)

Query: 97  VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156
            +        R    +L  +G   P          +   +    +  +++   HG     
Sbjct: 60  FVTHGSFFRARRSKTILLCSGQPQPAYA---DMHCIDVCTNEEAIVRDILRMHHG----A 112

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                 +       A  L+ RE   L L   GY +++IA+ L + + TV ++  +   KL
Sbjct: 113 HRSEHIVPGAVRPEAAPLSGREAEVLALIARGYMNKQIADSLQIGLTTVISHRRNIMEKL 172

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +       A+  GY+
Sbjct: 173 GIRSVAGLAIYALTAGYV 190


>gi|296159395|ref|ZP_06842220.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295890379|gb|EFG70172.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 493

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 43/114 (37%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P          +   +       EV+     A        +E  + RS     L+ RE  
Sbjct: 380 PAFSPDEAAALLTEQARAGRFDAEVVKATVSAELGDCRASVEDDRARSPKTGLLSPREAE 439

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+    G +++E+A  L LS  TV  ++ S   KL+   R  A  KA   GYI
Sbjct: 440 VLKHISLGASNKEVARALELSPSTVRTHVESVFRKLECSTRAAATLKASALGYI 493


>gi|282861267|ref|ZP_06270332.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282563925|gb|EFB69462.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 1044

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 52/176 (29%), Gaps = 19/176 (10%)

Query: 77   LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL-----------LPFAGIAFPVRLG 125
            L        P  W                 ++                    +       
Sbjct: 865  LARAEGTDTPEDWARAAAAFGPLRRPYELAQVRHRWAESVIAASGDRGTATELLREAHTV 924

Query: 126  FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT------DFLELFKKRSSAARN--LTER 177
              + G +       +LA    I   G             D   L +  + A  +  LT R
Sbjct: 925  AERLGALPLAKNIGLLARRARIALTGPADHGRAGGPGGEDGETLSEPAADAVESFGLTSR 984

Query: 178  ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            E    +L   GYT+  IAE+L +S  T + ++ +   KL   +R +A A A RF  
Sbjct: 985  EQEVHRLVAAGYTNRRIAEELYISPKTASVHVSNILAKLGVASRGEAAALAHRFRL 1040


>gi|111021179|ref|YP_704151.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110820709|gb|ABG95993.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 223

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +AN  +I       + ++      +   +    LT+RE   L L   GY +  I+ +L
Sbjct: 125 RAVANGEVILGAAVAARAMSFMAASRRVGPTVFPELTDREREVLDLVARGYDNASISRRL 184

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            LS  TV  ++ +   KL   +R  AI +A   G 
Sbjct: 185 VLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 219


>gi|331002765|ref|ZP_08326280.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330407178|gb|EGG86682.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 215

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             LT+RE   + L  +GY++ +IAE+L +S  TV  +L +   KL   +R +
Sbjct: 142 ETLTKRELEVVLLLKEGYSNAKIAEELFVSEGTVKKHLSNIFGKLQLYSRTE 193


>gi|325000569|ref|ZP_08121681.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Pseudonocardia
           sp. P1]
          Length = 101

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                +    LE     + A   L+ RE+  L+L  +G T+++IA +L LS  TV  ++ 
Sbjct: 18  AFSPGLAAVVLESVAAPAVAVPALSPRESEVLRLVVEGLTAKQIAGRLVLSPRTVENHVQ 77

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               K     R   + +AI  G 
Sbjct: 78  RLLRKFGVPGRGALVRRAIEHGL 100


>gi|318060640|ref|ZP_07979363.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 226

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+    LT RE   L     G +++EIA +L +S  TV  ++  A  K+ A +R Q +  
Sbjct: 155 SARLAALTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVI 214

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 215 AYETGLV 221


>gi|312139261|ref|YP_004006597.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311888600|emb|CBH47912.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 291

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 38/239 (15%)

Query: 29  KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGL---- 84
             R  A+   +        ++    +H+Y          +   Y    L      +    
Sbjct: 57  GLRGLAVSESSGLGGHVVARRNPAAVHDYG-----RARTITHHYDGPVLAEGLCSVLAVP 111

Query: 85  -------LPIIWQSIQEETVIESSGQLSV-----------------RLEGGLLPFAGIAF 120
                    +++ +I+E   +       +                      LL  A    
Sbjct: 112 VVVRGNSRAVMYAAIRERVRLGDRIADVMMQAGRRLANEIAIRDEVDRRVALLDAAAAEV 171

Query: 121 PVRLGF-----HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           P   G            + +    +    +  +      ++          R +    L+
Sbjct: 172 PAPGGADAEEIRDVHAELRSIAQTVDDPALQEQLRALSNRLAGVGAADDTDRPTPPVALS 231

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L  A  G ++  IAE+L +   TV +YL SA  KLDA +R +A+  A R G +
Sbjct: 232 PREVDVLSHAALGCSNVVIAERLSVKPETVKSYLRSAMSKLDAHSRREAVVAARRLGLL 290


>gi|311109177|ref|YP_003982030.1| response regulator 18 [Achromobacter xylosoxidans A8]
 gi|310763866|gb|ADP19315.1| response regulator 18 [Achromobacter xylosoxidans A8]
          Length = 236

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 27/181 (14%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGY 131
                P     +       +   L   +       A +              L     GY
Sbjct: 55  RLASQPFALALVDLGLPDGNGTDLIAEMHAEDPSLAILVISAWSTEDAILAALRAGATGY 114

Query: 132 VIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARN-------------- 173
           V+   + L ++  +     G      +       EL  +R+  +                
Sbjct: 115 VLKERDDLEVSLSIRSVLRGGAPIDPFVARRIIEELRPRRTGPSDAAAGDPAESADSGET 174

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE+  L+L  +G  + EIAE+L LS +TV  ++     KL   +R +AI  A   G 
Sbjct: 175 LSPRESQILRLVSEGLGNREIAEELHLSRYTVECHVKHIYRKLAVSSRTRAIHAARTRGL 234

Query: 234 I 234
           +
Sbjct: 235 L 235


>gi|251795068|ref|YP_003009799.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542694|gb|ACS99712.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 218

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 12/137 (8%)

Query: 110 GGLLPFAGIAFPVRLG----FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLE 162
             +L + G               +G++  T     L N +     G       ++     
Sbjct: 75  RRVLIYTGYEISTHYNLLIECGVSGFISKTVSREQLHNNIRCAMRGEAVIPITLLKQLRR 134

Query: 163 LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              K + A +     ++ ER+   LQ    G ++++IA KL +S  TV   L     KL 
Sbjct: 135 NEVKITRAEKAIEEVSINERDQDILQEVASGSSNKDIAAKLHMSQRTVEYNLTRIFEKLS 194

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R +AI +A R G I
Sbjct: 195 VRSRSEAIVEAKRLGLI 211


>gi|6094276|sp|P56644|SGAR_HYPME RecName: Full=Probable transcriptional regulatory protein sgaR
          Length = 211

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              +LT RE   L    +G+T+ +IA + G+S +TV  +L +   KL   NR  A+A 
Sbjct: 144 PLESLTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVAL 201


>gi|325474944|gb|EGC78130.1| hypothetical protein HMPREF9353_00977 [Treponema denticola F0402]
          Length = 140

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 156 VITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           +  +  E  ++             L+++E   ++L  +G ++++IA K GLS  T+   +
Sbjct: 56  LFENHEEAEERLIRPLSEIQDEFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNI 115

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                K    +R Q  A A + G +
Sbjct: 116 SVIFDKTFVSDRTQLAAFAFKNGIV 140


>gi|295084625|emb|CBK66148.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
          Length = 202

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 152 ACYQVITDFLELFKKRS-SAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                  +   +    S   A+     L+ RE   L L   G  ++EIA+KL +S+ TV 
Sbjct: 110 LHQHAHHNGYPVKDMPSMPPAQPHQEILSSREIEVLVLITKGLINKEIADKLNISLTTVI 169

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  + T KL   +       A+  GYI
Sbjct: 170 THRKNITEKLGIKSVSGLTIYAVMNGYI 197


>gi|284030284|ref|YP_003380215.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809577|gb|ADB31416.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                                  LT+RE   L     G ++ EIA +L +S  TV A++G
Sbjct: 132 RLLDAFAARLPGAAPDPDPRIGQLTDREREVLVEVAKGRSNAEIAGELMVSAATVKAHVG 191

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+  +R+Q +  A   G +
Sbjct: 192 RILTKLELRDRVQIVVLAYETGVV 215


>gi|196231881|ref|ZP_03130737.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224003|gb|EDY18517.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 195

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++ D   L      AA +LT+RE + LQ+  +G +++E+AE++ ++  TV  +   
Sbjct: 113 FATKLMDDERHLHT----AASHLTDRERAILQMIAEGMSNKEMAERISIAPKTVEHHRAQ 168

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +       A+R G +
Sbjct: 169 VMQKLGMHDVATLTRYAVRMGLV 191


>gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 229

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTER-----------ETSCLQLAGDGYTSEEIAEKLGL 200
              +  ++ L L +++S        R           E    +    G+T+++I EKL +
Sbjct: 121 RSRRTQSEILRLIQQQSQPKPEADPRPTPPELPLTPAEERVFREVIRGFTNKQIGEKLFI 180

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           S  TV  +L +   KL   NR Q +  A   GY
Sbjct: 181 SPRTVQTHLTNILSKLSLENRSQLVRFAYERGY 213


>gi|291560732|emb|CBL39532.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [butyrate-producing bacterium
           SSC/2]
          Length = 222

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +T+ E   ++L G G +++EI+ +L LS  TV  YL +   KLD  +R Q     ++ 
Sbjct: 155 EEITDAEWEIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQS 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|260778656|ref|ZP_05887548.1| two component transcriptional regulator LuxR family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604820|gb|EEX31115.1| two component transcriptional regulator LuxR family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 131

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  + +IAE L + + TV  +  +   KLDA N    +  A R G 
Sbjct: 72  LTPREKQVLKLIFEGKRNRDIAEALLIGLKTVETHRMNIMRKLDAHNVADLMKWAHRMGI 131


>gi|311741323|ref|ZP_07715147.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303493|gb|EFQ79572.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 217

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173
           L     G+++ T+    L   V   A G       V+ + + L        +        
Sbjct: 98  LRAGAVGFLLKTTAPEALVASVRAAAQGQQQLSPTVLENLVGLAATPPQPEQEMIQPSGL 157

Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE    QL   G ++ EIAE+L +S+ TV  ++     K+D  NR+  IA A+  
Sbjct: 158 AELSERENEIAQLVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IAIAVLG 216

Query: 232 G 232
           G
Sbjct: 217 G 217


>gi|254428093|ref|ZP_05041800.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196194262|gb|EDX89221.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 227

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +LT ++    +    G +++ IA +L ++  TV A++ +   KL A NR+QAI  A
Sbjct: 153 ESLTRKQLQVFERMTRGESNKMIAYELSIAESTVKAHVSAILRKLGATNRVQAILSA 209


>gi|167766736|ref|ZP_02438789.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1]
 gi|167711490|gb|EDS22069.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1]
          Length = 222

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +T+ E   ++L G G +++EI+ +L LS  TV  YL +   KLD  +R Q     ++ 
Sbjct: 155 EEITDAEWEIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQS 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|241518365|ref|YP_002978993.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862778|gb|ACS60442.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 203

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +LT RET  ++L  +G ++++I  +L L   T+  ++     KL A NR +A  +  +
Sbjct: 144 SLTARETEVIELVAEGLSNKQIGRRLNLQEKTIKHHMTEILSKLGASNRTEAAIRWRQ 201


>gi|116051440|ref|YP_789727.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586661|gb|ABJ12676.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 827

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193
              L     +       ++     +LF             L+ RE + L L   G +++E
Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I E+L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826


>gi|320457478|dbj|BAJ68099.1| putative two-component response regulator [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 132

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +      +NLT RET  + L   GYTS+EI + LG+   TV  Y+   T K+D  NR QA
Sbjct: 63  EDAGQYHKNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQA 122

Query: 225 IA 226
           + 
Sbjct: 123 VI 124


>gi|308177129|ref|YP_003916535.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307744592|emb|CBT75564.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 2/126 (1%)

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
                  AG              V+  +E     +  I  A     +V            
Sbjct: 97  RALSGGAAGFMLKSSGPDELISAVLAVAEGAAALSPRI--AQRVIEKVRNLDSSGQSDAQ 154

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +  R LT RE   L L G   T+ EIA +L L+  TV  ++ S  +K++A NR+ A   A
Sbjct: 155 TLVRKLTAREHDVLALVGASLTNSEIAGRLFLTEATVKGHMTSIMLKINARNRVDAALIA 214

Query: 229 IRFGYI 234
            R G +
Sbjct: 215 YRAGIV 220


>gi|300728290|ref|ZP_07061658.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
 gi|299774525|gb|EFI71149.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
          Length = 322

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           K   +   L+ERE   +     G T++EI + L +S++TV  +  +   KL   +     
Sbjct: 247 KSPHSDEALSEREKDVIVALVQGMTNKEIGDHLCISINTVITHRRNIAKKLQIHSPAGLT 306

Query: 226 AKAIRFGYI 234
             AI    I
Sbjct: 307 IYAIVNNLI 315


>gi|300024629|ref|YP_003757240.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526450|gb|ADJ24919.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 225

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 16/166 (9%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP-VRLGFHKNGYVIFTSEFL 139
                P     +          +  + L         +    +         + + +   
Sbjct: 46  LESKTPFDIVLLDLALPGTRGFEGLLELRKLHPSLPIVVVSALEDPRIVQDVMRYGAAGF 105

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------------LTERETSCLQL 184
           +  +    E   A   V+   L L K                       LT ++ S L++
Sbjct: 106 ISKSADRSEIASALKDVMEGSLTLPKGYKPPEAPTNAEARGDLVHRLKMLTPKQLSVLRM 165

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              G  +++IA +L +   TV A++     KL+  +R QA+ +A +
Sbjct: 166 LRQGLLNKQIAHELQIEETTVKAHVSEILRKLNVSSRTQAVIEAQK 211


>gi|52142347|ref|YP_084482.1| response regulator of salavaricin regulon [Bacillus cereus E33L]
 gi|51975816|gb|AAU17366.1| response regulator of salavaricin regulon [Bacillus cereus E33L]
          Length = 192

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ 
Sbjct: 120 PTETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVT 179

Query: 227 KAIRFGYI 234
           K I+ GYI
Sbjct: 180 KGIKLGYI 187


>gi|84622783|ref|YP_450155.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366723|dbj|BAE67881.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 552

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +      L      A    +ERE   L     GY++++IA +L LS +TV  +L +
Sbjct: 454 RALTIQALLERLSDDDDPAGDIFSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKN 513

Query: 212 ATVKLDAVNRIQAI--AKAIRFGYI 234
              KLDA +R  A+  A+A++ G +
Sbjct: 514 LYRKLDARSRESALAQAQAVQRGLL 538


>gi|256375685|ref|YP_003099345.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255919988|gb|ACU35499.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 238

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R L+ RE   LQL  DG +++EI E L LS  TV ++L     KL   +R Q +A A+
Sbjct: 173 TPRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAM 232

Query: 230 RFGYI 234
           R G I
Sbjct: 233 RAGVI 237


>gi|124008768|ref|ZP_01693457.1| transcriptional regulator, LuxR family protein [Microscilla marina
           ATCC 23134]
 gi|123985681|gb|EAY25561.1| transcriptional regulator, LuxR family protein [Microscilla marina
           ATCC 23134]
          Length = 214

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            + I          ++    L          LT+RE     L   G+T +++AE+L +S+
Sbjct: 133 WDDIQRLALFNTAAVSKEHSLS------NYALTKREQEVALLLIKGHTYKQVAEQLFISL 186

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235
            TV  +  +   K    ++I+ ++       IC
Sbjct: 187 PTVKTHASNIYKKCGVKSKIELLSL-----IIC 214


>gi|119714200|ref|YP_919342.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526109|gb|ABL79479.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 214

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G ++ EIA  L +S  T   ++ S   KL    R +A+A+A   G 
Sbjct: 153 LSAREVEVLDLIAAGRSNAEIAASLVVSPKTAKNHVSSILTKLGC-TRTEAVARARDAGL 211


>gi|331003869|ref|ZP_08327361.1| hypothetical protein HMPREF0491_02223 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412061|gb|EGG91458.1| hypothetical protein HMPREF0491_02223 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 217

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + +T+ E S ++    G +++EIA++L  S  TV  YL +   KL+  +R Q    AI  
Sbjct: 155 KAITKNEWSIIEEVAKGKSNKEIAKELNFSEGTVRNYLSTILDKLELRDRTQLAIWAIGR 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|300743763|ref|ZP_07072783.1| DNA-binding response regulator, LuxR family [Rothia dentocariosa
           M567]
 gi|300380124|gb|EFJ76687.1| DNA-binding response regulator, LuxR family [Rothia dentocariosa
           M567]
          Length = 201

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 44/110 (40%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
              ++G   F ++         I       +V+ D   L    +  A  L  R    L+L
Sbjct: 92  RALESGACAFITKDQDAEEVSNIIRDIHSGKVVVDSALLLSGATLPANPLKPRHQDVLKL 151

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G T  +IA +L LS  TV  YL  A   L   +R++A   A   G+I
Sbjct: 152 TMEGKTVNQIARELYLSHGTVKNYLSEAIQLLHCTSRVEAAHTARTNGWI 201


>gi|167572664|ref|ZP_02365538.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 267

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 15/214 (7%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +           Y I++A   P   +L     +           L   +      
Sbjct: 57  ASLQALARPTAV---VFYRIDTA-GEPADFELFGMSASMHRAYVSRYRPLDPLH--PSRC 110

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-- 136
               G +  +   + +E     +                +   +R G             
Sbjct: 111 AAQPGAIVTLASQLPDERRA--ASSYWTGFLRRHGVADVVEMLLRDGGAAVAAFSLLRLA 168

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTS 191
                + + +         V    L   +     +R +    LT RE    +L  DG ++
Sbjct: 169 GDGRYSADELAALRAVQPVVEVALLPPLRAVRGIRRIACDARLTHREEQIARLVRDGRSN 228

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +EIA  L L   TV  +L     KL   NR + +
Sbjct: 229 KEIARDLSLGQPTVKTHLLRMFRKLGVSNRTELV 262


>gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 242

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            + T RE S LQL  +G  ++EIA KL  S+  V  Y+    +K    +R + +  A+  
Sbjct: 179 PSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALEN 238

Query: 232 GYI 234
             +
Sbjct: 239 HLV 241


>gi|91787064|ref|YP_548016.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696289|gb|ABE43118.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 213

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 151 GACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +V        +    +     L+ RE    +L  DG T  +IA +L LSV TV+ +
Sbjct: 124 FISAEVAEQLALGAMPGSEAPRHDCLSNREFEVFRLVVDGMTLTDIAAQLHLSVKTVSTH 183

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
             +   K+   N+ + I  A++ G 
Sbjct: 184 KVNLMHKMGLHNQSELIRYALKHGL 208


>gi|150018684|ref|YP_001310938.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905149|gb|ABR35982.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 219

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             LT+RE    +L   G ++++I   L L+  TV  YL +   KL+  +R +    
Sbjct: 158 ELLTQREMDVAKLVAQGNSNKDICHTLFLTEGTVKNYLTNIFEKLELSSRTELALF 213


>gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 222

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                R S++  LTERE   L+    G T+++IA+ L LS  TVN +L    VKL    R
Sbjct: 149 AAAYTRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETR 208

Query: 222 IQAIAKAI 229
             A + A+
Sbjct: 209 TAATSVAL 216


>gi|322614808|gb|EFY11737.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618915|gb|EFY15803.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623622|gb|EFY20461.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629079|gb|EFY25858.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631800|gb|EFY28554.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637463|gb|EFY34165.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642147|gb|EFY38757.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645829|gb|EFY42350.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649793|gb|EFY46218.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653193|gb|EFY49526.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660658|gb|EFY56894.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664810|gb|EFY61003.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668811|gb|EFY64963.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670683|gb|EFY66816.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679079|gb|EFY75134.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682106|gb|EFY78131.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685064|gb|EFY81061.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323193043|gb|EFZ78266.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196875|gb|EFZ82017.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203860|gb|EFZ88877.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207054|gb|EFZ92007.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209899|gb|EFZ94813.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214419|gb|EFZ99170.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220141|gb|EGA04605.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226305|gb|EGA10517.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230258|gb|EGA14378.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233996|gb|EGA18085.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238310|gb|EGA22368.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243997|gb|EGA28006.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246585|gb|EGA30559.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252172|gb|EGA36029.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257780|gb|EGA41459.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261204|gb|EGA44796.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264864|gb|EGA48363.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272428|gb|EGA55835.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 210

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  A    
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208

Query: 233 YI 234
            +
Sbjct: 209 LL 210


>gi|311693703|gb|ADP96576.1| two component transcriptional regulator, LuxR family [marine
           bacterium HP15]
          Length = 221

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           ++ +D  +  +K +    +LT ++   L +  +G  +++IA  L +S  T+ A++ +   
Sbjct: 137 RMHSDATDFSEKLA----SLTPQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFR 192

Query: 215 KLDAVNRIQAIAKAIRF 231
           KL   NR QA+  AI+ 
Sbjct: 193 KLGVRNRTQAV-IAIQQ 208


>gi|298250464|ref|ZP_06974268.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548468|gb|EFH82335.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 138 FLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                 E+++                        ++   LTERE   L     G  S+EI
Sbjct: 119 ERAARGEMLLQPELLQRVLDYAARRAAPASPPPGNSNVQLTEREQEVLAGIATGERSKEI 178

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +LG++  TV +YL S   KLD  +R  A+A AI  G +
Sbjct: 179 GARLGITRRTVESYLNSIYTKLDVDSRAAAVAVAIERGLL 218


>gi|297159287|gb|ADI08999.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +          +          ++    ++E          +      ++
Sbjct: 98  AAVEAGACGYLLKSASGDEIADAIRSAAEGETLIPASTLVEVLAR----HRETARSSAQQ 153

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +    +LT RE   L L   G  +  +AE+L +S  TV  ++     KL+  ++++A+AK
Sbjct: 154 TERLESLTPREQEILTLMSQGLDNRAVAERLSISYATVRTHVRKILEKLEVRSQLEAVAK 213

Query: 228 AIRFGY 233
           A  +G+
Sbjct: 214 AADWGF 219


>gi|239933574|ref|ZP_04690527.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291441947|ref|ZP_06581337.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291344842|gb|EFE71798.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 231

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 132 VIFTSEFLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            +  +   + A + ++      G   + +                LT RE   L L   G
Sbjct: 113 ELLGAVRTVAAGDALLSPSATRGLIRRFLAQPEPCTAAVHERLECLTRRERDVLGLVALG 172

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++EEIAE+L +S  T   ++  A  KL   +R Q +  A + G +
Sbjct: 173 LSNEEIAERLFVSPLTAKTHVNRAMTKLAVRDRAQLVVVAYQCGVV 218


>gi|329848633|ref|ZP_08263661.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328843696|gb|EGF93265.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 246

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 11/218 (5%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           +  ++  +    FA+     A       + +    +   D             D      
Sbjct: 35  IQALRRIVPFDFFAM--SGMAPFGLGVGRGVMLATDMPEDFIRKFLAEKLYPHDP----L 88

Query: 81  NSGLLPI----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +  + P+     W  ++ + +  +       LE               G  + G V F  
Sbjct: 89  SFLVTPVNPWGSWHDLEPDALTGTGIPRIRALEREYGITTRTVVGFFNGDERYGGVTFCR 148

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
                 NE       A   V  +  + F    ++   L+  E  CL    +GY   EI E
Sbjct: 149 SSPFSDNET-FILEMATRVVHAELSDKFLSDMNSHMGLSAGELLCLGHFANGYDISEIEE 207

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +  T+ +Y  SA  KL A  R  A+A+A+R   I
Sbjct: 208 ATGYTTETIYSYSKSAAKKLGARARTDAVAEAMRRKLI 245


>gi|297195101|ref|ZP_06912499.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152625|gb|EFH31883.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L+  ++ ++                          LT RE   L+L   G T+ EIA +
Sbjct: 119 RLVARSDSLLFPAAVRSLAAEYGRREAVTAPPWVARLTGREAEVLRLMATGLTNAEIAGR 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +G+   T   ++ +   K+ A +R QA+  A   G+I
Sbjct: 179 MGVGPATTKTHVAAVLGKIGARDRTQAVIAAYESGFI 215


>gi|296388063|ref|ZP_06877538.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 827

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193
              L     +       ++     +LF             L+ RE + L L   G +++E
Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I E+L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826


>gi|167584977|ref|ZP_02377365.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 227

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 47/114 (41%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++  H    + +   +      +S    LT R
Sbjct: 111 VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGHTFFSEGLAARMIHASAAASPLDRLTPR 170

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 171 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 224


>gi|227818611|ref|YP_002822582.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36958866|gb|AAQ87291.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234]
 gi|227337610|gb|ACP21829.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
          Length = 267

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 66/238 (27%), Gaps = 41/238 (17%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD----SGDIPNILIETYG 73
             RL  +   +      ++          +++ +     +D         +         
Sbjct: 30  FRRL--MSALMTFDYVVVFAYRG------KERPLDLYSTFDAKDHVLFVSLYQAGPYLL- 80

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D F  H      P +W+  +       S +              + F V +       + 
Sbjct: 81  DPFY-HAACAPKPGVWRMRELAPDRFFSSEYYRTYYVRTGLAEEVGFFVTVSEQVTVVLS 139

Query: 134 FTSEF-----LMLANEVI---------------IEAHGACYQVITDFLELFKKRS-SAAR 172
                           ++                +        + +     +K     A 
Sbjct: 140 LMRREATGVFGPAEFALLKKAEPMVAALVRHHWADLDRRFDAALANMGRSRRKAVHPPAD 199

Query: 173 ------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                 NLTERE + ++L   G++SE I  KLG+S  TV  +  +   KL   ++ Q 
Sbjct: 200 GVWQHLNLTEREAAIIELVLQGHSSESIGLKLGISTGTVKVHRRNVYRKLGISSQTQL 257


>gi|92116468|ref|YP_576197.1| two component LuxR family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91799362|gb|ABE61737.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 210

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAE 196
            + +E +I A                +     +    LT RE     L   G  ++++A 
Sbjct: 105 PVPSEQLIGAIERALARHESVRSQRSRLDTVLALLAKLTPRERQVFDLIVRGRINKQVAR 164

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +LG +  TV A+      K+   +  + ++ A R G I
Sbjct: 165 ELGTTERTVKAHRHEVMEKMRVHSLAELVSIAERLGLI 202


>gi|42527826|ref|NP_972924.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|41818654|gb|AAS12843.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
          Length = 217

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 156 VITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           +  +  E  ++             L+++E   ++L  +G ++++IA K GLS  T+   +
Sbjct: 133 LFENHEEAEERVIRPLAEIQDEFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNI 192

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                K    +R Q  A A + G +
Sbjct: 193 SVIFDKTFVSDRTQLAAFAFKNGIV 217


>gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
 gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
          Length = 245

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F       + +       ++     L         + T RE S LQL  +G  ++EI
Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEAL-PSTEPVVHSFTPREASVLQLVAEGLMNKEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+     K    +R + +  A+    +
Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|228915760|ref|ZP_04079341.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843862|gb|EEM88930.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 191

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ K
Sbjct: 121 TETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTK 180

Query: 228 AIRFGYI 234
            I+ GYI
Sbjct: 181 GIKLGYI 187


>gi|224535141|ref|ZP_03675680.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523238|gb|EEF92343.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 209

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L+ RE   L L   G  ++EIA+KL +S+ TV ++  + T KL   +       A+  
Sbjct: 142 HDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVAGLTIYAVMH 201

Query: 232 GYI 234
           GY+
Sbjct: 202 GYV 204


>gi|218890380|ref|YP_002439244.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218770603|emb|CAW26368.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 827

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193
              L     +       ++     +LF             L+ RE + L L   G +++E
Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I E+L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826


>gi|168699457|ref|ZP_02731734.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 213

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-NLTERETSC 181
               GYV   +    L   +   A G       V   +L       + +   L+ERE   
Sbjct: 98  AGATGYVPKRAAAADLVGAIRHAAAGRTYLDPSVTGPYLSAEPATEATSDHGLSEREVEV 157

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+    GY++++IA +L +SV +V  Y G A  KL   +R+  +  A+R G++
Sbjct: 158 LKQLTAGYSNKQIAARLEVSVKSVETYKGRAMEKLGIRSRVGLVQFAVRQGWL 210


>gi|123440700|ref|YP_001004692.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087661|emb|CAL10443.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 210

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  +  IA +L +S  TV  +  +   KLD     + I  + R G 
Sbjct: 149 LTPRERQILKLITEGSCNRMIASQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|152997248|ref|YP_001342083.1| two component LuxR family transcriptional regulator [Marinomonas
           sp. MWYL1]
 gi|150838172|gb|ABR72148.1| two component transcriptional regulator, LuxR family [Marinomonas
           sp. MWYL1]
          Length = 213

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             + S    L++RE    Q+  D   S EIAE L +S  TV+ Y      KL+  + ++ 
Sbjct: 141 DGQGSPLGQLSDRELQVAQMIVDCKKSNEIAEHLCVSPKTVSTYRTRIFTKLNIESDVEL 200

Query: 225 IAKAIRFGYI 234
           I  A+R+  +
Sbjct: 201 IRLAVRYNVL 210


>gi|107102954|ref|ZP_01366872.1| hypothetical protein PaerPA_01004023 [Pseudomonas aeruginosa PACS2]
          Length = 827

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193
              L     +       ++     +LF             L+ RE + L L   G +++E
Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I E+L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826


>gi|86740192|ref|YP_480592.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86567054|gb|ABD10863.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 231

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 160 FLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            + L +  +       LT++E   L+L  +G T+ +IA ++ L+  TV  Y+ S   KL 
Sbjct: 156 LVRLREGPAEDERLSGLTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLSKLG 215

Query: 218 AVNRIQAIAKAIRF 231
             +R QA   A R 
Sbjct: 216 LESRTQAAVFATRL 229


>gi|49478066|ref|YP_037282.1| salavaricin two-component response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329622|gb|AAT60268.1| salavaricin two-component response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 192

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ K
Sbjct: 121 TETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTK 180

Query: 228 AIRFGYI 234
            I+ GYI
Sbjct: 181 GIKLGYI 187


>gi|83721051|ref|YP_441647.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167580458|ref|ZP_02373332.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|257139656|ref|ZP_05587918.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83654876|gb|ABC38939.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 279

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++   E +  L     G L        P  L       V+   
Sbjct: 63  LHALCQACAPTPVAALTDDASPEHAQALFN--AGVLGVIPRSTRP-HLIVRALEMVLLGG 119

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 120 HYVPPSALNLTEPIARARDGRVDAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|254242106|ref|ZP_04935428.1| hypothetical protein PA2G_02835 [Pseudomonas aeruginosa 2192]
 gi|126195484|gb|EAZ59547.1| hypothetical protein PA2G_02835 [Pseudomonas aeruginosa 2192]
          Length = 827

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193
              L     +       ++     +LF             L+ RE + L L   G +++E
Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I E+L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826


>gi|323132148|gb|ADX19578.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 217

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166
           A I   V             G   F S+      E+I   H         +L      K 
Sbjct: 95  ATIVLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 151

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 152 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 211

Query: 227 K 227
           +
Sbjct: 212 R 212


>gi|319791283|ref|YP_004152923.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315593746|gb|ADU34812.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 230

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LTER+   LQL   G  ++ I   LG+S  TV  +L +    L+  NR +A+  A   
Sbjct: 167 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAAQAL 224


>gi|256839247|ref|ZP_05544757.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262382307|ref|ZP_06075444.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|301308485|ref|ZP_07214439.1| putative transcriptional regulator, LuxR family [Bacteroides sp.
           20_3]
 gi|256740166|gb|EEU53490.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262295185|gb|EEY83116.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|300833955|gb|EFK64571.1| putative transcriptional regulator, LuxR family [Bacteroides sp.
           20_3]
          Length = 193

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+ RE   LQL   G T++EIA+KL +S++TV  +  + T KL           AI  
Sbjct: 124 KDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMN 183

Query: 232 GYI 234
           G I
Sbjct: 184 GII 186


>gi|255012345|ref|ZP_05284471.1| transcriptional regulator [Bacteroides sp. 2_1_7]
 gi|298374802|ref|ZP_06984760.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19]
 gi|298269170|gb|EFI10825.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19]
          Length = 193

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+ RE   LQL   G T++EIA+KL +S++TV  +  + T KL           AI  
Sbjct: 124 KDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMN 183

Query: 232 GYI 234
           G I
Sbjct: 184 GII 186


>gi|291302711|ref|YP_003513989.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571931|gb|ADD44896.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK----RSSAA- 171
           LG   +G+++ + +   L   +   A GA         +VI +           R++ A 
Sbjct: 89  LGDGASGFLLKSGDPRELIAGIHAVAAGAAFLSPQVAQRVIAELARGSGGGKLSRAATAR 148

Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+RE   L L G G ++ EIA++L +   TV AY+ +   +L+  NR+QA   A
Sbjct: 149 TKIDKLTDREREVLALVGAGCSNAEIAKRLHVVEGTVKAYVSAILTRLEVRNRVQAAIIA 208

Query: 229 IRFGYI 234
              G +
Sbjct: 209 YEAGLV 214


>gi|197335562|ref|YP_002157169.1| two-component response regulator [Vibrio fischeri MJ11]
 gi|197317052|gb|ACH66499.1| two-component response regulator [Vibrio fischeri MJ11]
          Length = 209

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 ++    LT ++   L +  DG  +++IA  L +S  T+ A++ +   KL   NR
Sbjct: 138 AACDDLATKIAALTPQQYKVLGMLSDGLLNKQIAYDLEVSEATIKAHMTAIFRKLGVKNR 197

Query: 222 IQAIAK 227
            QA+  
Sbjct: 198 TQAVIL 203


>gi|197105564|ref|YP_002130941.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196478984|gb|ACG78512.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 226

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               ++         R +    A +LT RE   L     G T  EIA++LGLS HTV ++
Sbjct: 139 IARFIVKRARAESGARPAPVQEAPHLTPRELDILWGIAKGLTYNEIADRLGLSRHTVPSH 198

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL    R +A+ +A++ G I
Sbjct: 199 IKAIYRKLQVATRGEAVYEAVQCGLI 224


>gi|150010404|ref|YP_001305147.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|149938828|gb|ABR45525.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
          Length = 193

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+ RE   LQL   G T++EIA+KL +S++TV  +  + T KL           AI  
Sbjct: 124 KDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMN 183

Query: 232 GYI 234
           G I
Sbjct: 184 GII 186


>gi|71065269|ref|YP_263996.1| LuxR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71038254|gb|AAZ18562.1| putative transcriptional regulator, LuxR family [Psychrobacter
           arcticus 273-4]
          Length = 211

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L    +S    L++RE     +  +  + ++IA++L +SV T+N Y      K++  + +
Sbjct: 138 LSDNANSPFDLLSDREKQVAMMVVNCQSPQQIADQLFVSVKTINTYRYRIYEKVNVDSDV 197

Query: 223 QAIAKAIRFGYI 234
           +    AIR G I
Sbjct: 198 KLTHLAIRHGLI 209


>gi|16767074|ref|NP_462689.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167992368|ref|ZP_02573466.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168241993|ref|ZP_02666925.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450800|ref|YP_002047821.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|136767|sp|P27667|UHPA_SALTY RecName: Full=Transcriptional regulatory protein uhpA
 gi|154408|gb|AAA27243.1| hexosephosphate utilization protein [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16422360|gb|AAL22648.1| response regulator (repressor) in two-component regulatory system
           wtih UhpB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194409104|gb|ACF69323.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205329377|gb|EDZ16141.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338886|gb|EDZ25650.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261248934|emb|CBG26791.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267996067|gb|ACY90952.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160322|emb|CBW19847.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914918|dbj|BAJ38892.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321226849|gb|EFX51899.1| Transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|332990638|gb|AEF09621.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 196

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166
           A I   V             G   F S+      E+I   H         +L      K 
Sbjct: 74  ATIVLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|331696706|ref|YP_004332945.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951395|gb|AEA25092.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 238

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R L+ RE   LQL  DG +++EI E L LS  TV ++L     KL   +R Q +A A+
Sbjct: 173 TPRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAM 232

Query: 230 RFGYI 234
           R G I
Sbjct: 233 RAGVI 237


>gi|311696551|gb|ADP99424.1| two-component response regulator [marine bacterium HP15]
          Length = 279

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE+  L    +G T+ EI + L +S  TVN +L     KL   NR  A A AIR 
Sbjct: 217 ELTLRESDVLLWIANGKTNREIGQILDMSPRTVNKHLEQVFRKLGVENRTAAAASAIRL 275


>gi|253996775|ref|YP_003048839.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983454|gb|ACT48312.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 205

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LTERE   + LA  G+ +++IA +LG+S  TV  +  +   K  A + +     A + G
Sbjct: 143 SLTEREYDVMLLAIQGHHNKDIARQLGISHRTVEIHKSNIMHKTGANHVLDLARIAHKSG 202

Query: 233 Y 233
            
Sbjct: 203 L 203


>gi|126650269|ref|ZP_01722497.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592919|gb|EAZ86901.1| two-component response regulator [Bacillus sp. B14905]
          Length = 208

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+++E   LQL   G T++ IA  +G++  TV  YL    VKL+  +R +A+  A    +
Sbjct: 147 LSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVAKEKAW 206

Query: 234 I 234
           I
Sbjct: 207 I 207


>gi|297196139|ref|ZP_06913537.1| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297153089|gb|EDY63356.2| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 897

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 33/70 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                 A  L+ RE   L+      ++EEIA  L +SV+TV  +L S   KL    R +A
Sbjct: 828 PPPPLVAEKLSGRERDVLERLARMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVSRRNEA 887

Query: 225 IAKAIRFGYI 234
           + +A   G +
Sbjct: 888 VRRARELGLV 897


>gi|302381790|ref|YP_003817613.1| LuxR family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192418|gb|ADK99989.1| two component transcriptional regulator, LuxR family [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 208

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R      LT RE   L+    G T++EIA  LG+   TV A++     KL   +R QA 
Sbjct: 141 PRPDDLDRLTPREREVLESVARGLTNKEIARDLGIGPGTVKAHVEKLIAKLGVADRTQAA 200

Query: 226 AKAIRF 231
             A R 
Sbjct: 201 VFAARA 206


>gi|242238892|ref|YP_002987073.1| response regulator [Dickeya dadantii Ech703]
 gi|242130949|gb|ACS85251.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech703]
          Length = 218

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+++L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQTETPLECLSERELQIMMMITKGQKVTEISDQLNLSPKTVNSYRYRMFNKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 INGDVELTHLAIRHGL 208


>gi|254461185|ref|ZP_05074601.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacterales bacterium HTCC2083]
 gi|206677774|gb|EDZ42261.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 251

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 10/204 (4%)

Query: 32  NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91
            F+ +   ++L  P        L N+D    ++            +    + +    W  
Sbjct: 39  GFSHFMSKTSLGDPD---DFVLLTNHDPKYMNLFIGSGLYRDAPMVRWALNNVGACSWGY 95

Query: 92  I---QEETVIESSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEV 145
           +        +    +  + +       AG +     +         +   +       + 
Sbjct: 96  LWGELASGSLSEREKQVIEINQQHSVTAGYSISFKAITSRSKGAIALTARAGMSQDEVDA 155

Query: 146 IIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           +   HG+   ++ +   L         R+LT+R+   L+  GDG T+++IA  +GL+  T
Sbjct: 156 VWAEHGSDIVLMNNIAHLKIMTLPLGGRSLTDRQREALEWVGDGKTTQDIALLMGLTAAT 215

Query: 205 VNAYLGSATVKLDAVNRIQAIAKA 228
           V  +L  A V L      QA+ KA
Sbjct: 216 VEKHLRLARVALSVETTAQAVLKA 239


>gi|207723944|ref|YP_002254342.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2]
 gi|206589151|emb|CAQ36113.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2]
          Length = 252

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 57/201 (28%), Gaps = 11/201 (5%)

Query: 36  YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95
              +  +             ++ ++       +        +  + +   P+ + +    
Sbjct: 40  VCSHGRITAAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYFDAAAPA 99

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLANEVIIEA-- 149
             I+      +           +A  V    H  G    +    S        V+ +   
Sbjct: 100 AEIDRG---WLAKFIAYDLRNAVADGVYDEGHCIGTYFSFHRLASVNEPFLASVLRDLTP 156

Query: 150 --HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
             H    + + D  + +         L+ERE       G G ++ EIA    +S +TV  
Sbjct: 157 VLHRTLMRAVADTEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQ 216

Query: 208 YLGSATVKLDAVNRIQAIAKA 228
           +L     K    NR+     A
Sbjct: 217 HLKHIMDKTGCANRVGVAVLA 237


>gi|223934338|ref|ZP_03626259.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896801|gb|EEF63241.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 236

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   LQL  +G  +++IA +L +S+ TV  +      KL+  +       AI  
Sbjct: 164 DYLTTREAEVLQLIAEGQANKQIAAELCISIKTVEKHRQQVMNKLNIHDVAGLTRHAISK 223

Query: 232 GYI 234
           G I
Sbjct: 224 GII 226


>gi|183982880|ref|YP_001851171.1| putative regulatory protein [Mycobacterium marinum M]
 gi|183176206|gb|ACC41316.1| conserved hypothetical regulatory protein [Mycobacterium marinum M]
          Length = 395

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITD---FLELFKKRSSAARNLTERETSCLQLAGDGY 189
              S           +      + +        L + ++ A   LT RE   L+L   G 
Sbjct: 287 ALASADEAARALQDADLDLRKIEPVERSPAARSLAEVQTRAMAMLTRREVEVLRLMAAGR 346

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           T+++IA++L +S  TV +++     KL A NR +A +  +R 
Sbjct: 347 TNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVRL 388


>gi|164686850|ref|ZP_02210878.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM
           16795]
 gi|164604240|gb|EDQ97705.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM
           16795]
          Length = 826

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 40/79 (50%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
             I+      +   +FL+  KK  S    L+ERE     LA  G+T+ EIA+KL +SV+T
Sbjct: 737 EAIDEIRILQKAYEEFLKFVKKEKSKVVELSERELEVANLAAQGFTNNEIAKKLFVSVNT 796

Query: 205 VNAYLGSATVKLDAVNRIQ 223
           V   L +   KL   +R +
Sbjct: 797 VKTILKAVFKKLCIKSRQE 815


>gi|157375894|ref|YP_001474494.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
 gi|157318268|gb|ABV37366.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
          Length = 211

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + +LT RE   LQ    G T+ +IA +L +S  T+  +L  A  K+   +R QAIA A
Sbjct: 145 SESLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202


>gi|83311866|ref|YP_422130.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946707|dbj|BAE51571.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 211

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT R+   L +   G +++EIA  L L+  TV  ++ +    L   NR QA   A + G
Sbjct: 152 LTPRQRDVLGMLRQGKSNKEIARDLSLAEITVKLHVTAILRALGCENRTQAAILAAKMG 210


>gi|328885076|emb|CCA58315.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 217

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 35/104 (33%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                      ++A  V                            LT RE   L   G+G
Sbjct: 113 EAVRTVARGEGLIAPAVTRRLIAEFAAPSRPARPAGGTDPGVLDALTPRERQVLSKLGEG 172

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            ++ EIA +L ++  TV  ++     KL+  +R+QA   A   G
Sbjct: 173 LSNAEIAVRLDMAEATVKTHVSKVLGKLELRSRVQAAVLAQELG 216


>gi|309792081|ref|ZP_07686555.1| TPR repeat-containing transcriptional regulator LuxR
           [Oscillochloris trichoides DG6]
 gi|308225888|gb|EFO79642.1| TPR repeat-containing transcriptional regulator LuxR
           [Oscillochloris trichoides DG6]
          Length = 845

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDG 188
           G         +   + +  + G     + D L L   +       L+ERE   L+L   G
Sbjct: 740 GAQAGGGTAWLERAQQLGASEGYQRSFVDDRLVLHVPQPPPLVEPLSEREIEVLRLLAAG 799

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y+  +IA +L LSV+TV  ++     KL    ++QAI +A   GY+
Sbjct: 800 YSYTQIAAQLVLSVNTVRYHIKGLYGKLGVNKQVQAIERARALGYV 845


>gi|126643311|ref|YP_001086295.1| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
          Length = 175

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +          +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 94  LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 153

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 154 GVQNRTQAV 162


>gi|120609353|ref|YP_969031.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120587817|gb|ABM31257.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 256

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
              + +A  L+ RE   L+    G +++EIA  L ++  TV  ++     KL   +R+QA
Sbjct: 187 PGAAGSASPLSAREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLGLSSRVQA 246

Query: 225 IAKAIRF 231
              A   
Sbjct: 247 AVYASER 253


>gi|331699431|ref|YP_004335670.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954120|gb|AEA27817.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 215

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E+  +  +    L+ERE   LQ    G +  ++A +L + V TV  ++     KL   +R
Sbjct: 142 EIRMRAQTTGPALSEREREVLQAFARGLSVPQVAGELFIGVSTVKTHVQRLYEKLGVSDR 201

Query: 222 IQAIAKAIRFGYI 234
             A+A+ +R G +
Sbjct: 202 AAAVAEGMRRGLV 214


>gi|315608347|ref|ZP_07883336.1| transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315249977|gb|EFU29977.1| transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 222

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  A+ LT+RE   L L   G  ++EI E L + + TV  +  +   KL   +     
Sbjct: 149 PRALRAKILTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEKLGLKSVSALT 208

Query: 226 AKAIRFGYI 234
             A+  GY+
Sbjct: 209 IYAVMRGYV 217


>gi|302544547|ref|ZP_07296889.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462165|gb|EFL25258.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 222

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L G+G  + +IAE++GL+  TV  ++ +   KL  +NR+QA   A R 
Sbjct: 150 DALTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRA 209

Query: 232 GYI 234
           G I
Sbjct: 210 GLI 212


>gi|296130400|ref|YP_003637650.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022215|gb|ADG75451.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 229

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGY 189
           FT   L  A   +            + L      +         L+ER+   ++L   G 
Sbjct: 127 FTGPDLERAVLAVASGAMLLSAPAAEALRRVPTAAPPGPRSDLGLSERQQEIMELVAAGR 186

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           T+  IA++L LS  TV  ++     +L    R +A+
Sbjct: 187 TNGAIAQELYLSEKTVKNHVNHIFARLGVATRAEAV 222


>gi|119471825|ref|ZP_01614158.1| response regulator receiver domain protein (CheY-like)
           [Alteromonadales bacterium TW-7]
 gi|119445315|gb|EAW26604.1| response regulator receiver domain protein (CheY-like)
           [Alteromonadales bacterium TW-7]
          Length = 201

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL       A  LT++E   L+LA DG  + EIA +L +S  T   YL  A  KL+A NR
Sbjct: 129 ELAINALDDADPLTDKERKALKLASDGLKTSEIATQLFISEGTTRNYLSDAIAKLNATNR 188

Query: 222 IQAIAKAIRFGYI 234
           I A   A + G++
Sbjct: 189 IDAARIAKQKGWL 201


>gi|109900326|ref|YP_663581.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109702607|gb|ABG42527.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 212

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           E      Q+  + L L ++ +     LT ++   L+L  DG  +++IA +L ++  TV A
Sbjct: 129 ELKAQIAQIDGEELNLAQRIA----ELTPKQFQVLKLIHDGLLNKQIAHELNVTEATVKA 184

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++ +   KL+   R QA+    +   
Sbjct: 185 HISAVFRKLEVNTRTQAVLLLKKLNL 210


>gi|330827950|ref|YP_004390902.1| LuxR family transcriptional regulator [Aeromonas veronii B565]
 gi|328803086|gb|AEB48285.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565]
          Length = 282

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 74/251 (29%), Gaps = 39/251 (15%)

Query: 12  SSLQELSPRLHLIQNRIKARNFAL---------YTINSALDFPRRQQLICELHNYD-LDS 61
           S+   L+  +  + + + +  FA             + AL     Q+ +    N +   +
Sbjct: 5   STTDALTRSMTEVVDALHSSAFAAALVRLIQQQVAFDCALLLGVGQRPVYLYDNLNHQRA 64

Query: 62  GDIPNILIETY-GDDFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIA 119
                 L   +  D F+      L   +W   Q     ++   +       G     G+ 
Sbjct: 65  LLFDRYLTSHFSQDPFMQALEQDLPAGVWTLAQVSQGRLDPEYRHHFYQATGWQEEVGLI 124

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------- 170
            PVR G     ++    +   L+ + +         V +       ++S           
Sbjct: 125 LPVRDGLTLMLFLGRLDKRSTLSRDELARLEQLFPLVHS-LCRQQWRQSQPLLAQSTVLP 183

Query: 171 -----------------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                               LT RE    +L   G  +E IA +LG+   TV  +     
Sbjct: 184 DSASLKSAVELAMASVGGDGLTRRERQVAELLLQGLDTEAIAAELGIGSGTVKNHRKHLY 243

Query: 214 VKLDAVNRIQA 224
            KL   +R + 
Sbjct: 244 GKLRLGSRAEL 254


>gi|265751338|ref|ZP_06087401.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|263238234|gb|EEZ23684.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 197

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              +   +++    H A  Q +   + + K        L+ RE   L L   G  ++EIA
Sbjct: 98  GSLIKDIHQLRQYGHQARKQAVDKAMHIEK----TEHELSIREIEVLILITKGLINKEIA 153

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +KL +S+ TV ++  + T KL   +       A+  GYI
Sbjct: 154 DKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 192


>gi|237708501|ref|ZP_04538982.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237723973|ref|ZP_04554454.1| transcriptional regulator [Bacteroides sp. D4]
 gi|229437637|gb|EEO47714.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229457430|gb|EEO63151.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 206

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              +   +++    H A  Q +   + + K        L+ RE   L L   G  ++EIA
Sbjct: 107 GSLIKDIHQLRQYGHQARKQAVDKAMHIEK----TEHELSIREIEVLILITKGLINKEIA 162

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +KL +S+ TV ++  + T KL   +       A+  GYI
Sbjct: 163 DKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 201


>gi|224367385|ref|YP_002601548.1| DNA-binding response regulator (LuxR-family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690101|gb|ACN13384.1| DNA-binding response regulator (LuxR-family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 220

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               ++ RE   LQL  +G  + +IAE+L +S+ TV A+  +   KL   +       AI
Sbjct: 148 PFGRISPREREVLQLIAEGVKTRQIAERLFVSIKTVEAHRRNIMNKLMISSVAGLTRFAI 207

Query: 230 RFGYI 234
           + G +
Sbjct: 208 QEGLV 212


>gi|212693876|ref|ZP_03302004.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855]
 gi|212663408|gb|EEB23982.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855]
          Length = 214

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              +   +++    H A  Q +   + + K        L+ RE   L L   G  ++EIA
Sbjct: 115 GSLIKDIHQLRQYGHQARKQAVDKAMHIEK----TEHELSIREIEVLILITKGLINKEIA 170

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +KL +S+ TV ++  + T KL   +       A+  GYI
Sbjct: 171 DKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 209


>gi|295836038|ref|ZP_06822971.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197695120|gb|EDY42053.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 223

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 18/135 (13%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-------------- 163
           +              +       L  ++ ++A     +V+     L              
Sbjct: 80  LVLTTFDEDDHVYGALRAGACGFLVKDMALDAILDAVRVVAAGDALIAPTVTRRLISEFA 139

Query: 164 ----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                +  +     LT RE   L L G G ++ E+A  + +S  T   Y+     KL A 
Sbjct: 140 HRAEAEPPTPVPTGLTNREREVLVLVGQGLSNTELAHHMHISTATAKTYVSRLLTKLGAR 199

Query: 220 NRIQAIAKAIRFGYI 234
           +R+Q +  A     +
Sbjct: 200 DRVQLVITAYEMKLV 214


>gi|200387543|ref|ZP_03214155.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604641|gb|EDZ03186.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 196

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166
           A I   V             G   F S+      E+I   H         +L      K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNNVELAH 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|118443997|ref|YP_877397.1| response regulator [Clostridium novyi NT]
 gi|118134453|gb|ABK61497.1| Response regulator (CheY-like recever domain and HTH) [Clostridium
           novyi NT]
          Length = 209

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LTERE   L L G G +++EI++K+ LS  T+  Y+ +   KL   +R Q    
Sbjct: 151 LTERELEILALIGQGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIY 204


>gi|326776427|ref|ZP_08235692.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
            XylebKG-1]
 gi|326656760|gb|EGE41606.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1079

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 173  NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             LT RE    +L   G+T+  IAE+L +S  T + ++ +   KL   +R +A A A R  
Sbjct: 1015 GLTPREQDVHRLVAAGHTNRRIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRLR 1074

Query: 233  Y 233
             
Sbjct: 1075 L 1075


>gi|307825893|ref|ZP_07656108.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
 gi|307733012|gb|EFO03874.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
          Length = 214

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    L++RE   + L   G T +E++E L LS  TVN Y      KL   N ++ I  A
Sbjct: 144 SPFALLSQREAEVVTLILQGKTIKEMSEMLVLSDKTVNTYRYRLYSKLHVKNDVELIRLA 203

Query: 229 IRFGYI 234
           I+FGYI
Sbjct: 204 IKFGYI 209


>gi|300174919|dbj|BAJ10692.1| hypothetical bacteriocin immunity protein [Streptococcus
           thermophilus]
          Length = 117

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+RE   L   G+G   +EIA KL +S  T+  ++ +   KL+  + I+AI KA +
Sbjct: 53  HDELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKARK 112

Query: 231 FGYI 234
            GYI
Sbjct: 113 MGYI 116


>gi|297156887|gb|ADI06599.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 222

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L   G    +IA++L ++  TV  ++GS   KL   +R QAI +A   G 
Sbjct: 160 LTAREREVLELLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRAREAGL 219


>gi|302534040|ref|ZP_07286382.1| two component system response regulator [Streptomyces sp. C]
 gi|302442935|gb|EFL14751.1| two component system response regulator [Streptomyces sp. C]
          Length = 237

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 34/88 (38%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           + A         D        +     LT RE   L     G +++ IA +L +S  TV 
Sbjct: 145 LIASFLAQGGRADAPATGTAHAERLATLTGREREVLVQVAGGLSNDGIAARLEVSPLTVK 204

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  A  KL A +R Q +  A   G +
Sbjct: 205 THVNRAMAKLGARDRAQLVVIAYESGLV 232


>gi|182435802|ref|YP_001823521.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
            griseus NBRC 13350]
 gi|178464318|dbj|BAG18838.1| putative LuxR-family transcriptional regulator [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1079

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 173  NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             LT RE    +L   G+T+  IAE+L +S  T + ++ +   KL   +R +A A A R  
Sbjct: 1015 GLTPREQDVHRLVAAGHTNRRIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRLR 1074

Query: 233  Y 233
             
Sbjct: 1075 L 1075


>gi|169260111|gb|ACA51941.1| BovR [Streptococcus equinus]
          Length = 198

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT+RE   L   G+G   +EIA KL +S  T+  ++ +   KL+  + I+AI KA +
Sbjct: 134 HDELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKARK 193

Query: 231 FGYI 234
            GYI
Sbjct: 194 MGYI 197


>gi|92113307|ref|YP_573235.1| LuxR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796397|gb|ABE58536.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 267

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 22/186 (11%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
            D+            D       +   P I +          S +              I
Sbjct: 70  SDTLRQYINHAYVL-DPLFHAIKNTASPGIVRLADIMPDSFKSTEYYQTCYQNFGLVDEI 128

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANE-----VIIEAHGACYQVITDFLELFKK------- 166
              + L       +    +  + +        + + H     ++  F +           
Sbjct: 129 NLLIHLDDEVTCAITLGRKASLESISRIELNALQDFHPIISALMRQFWQTQSDEFLQYGR 188

Query: 167 ---------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                    R+ A+  LT+RE     L   G++S+ IA+ L +SV TV  +  +   +L+
Sbjct: 189 SDGPMKRALRTFASGVLTQREREITDLILRGFSSQAIADHLKISVGTVKVHRKNIHARLN 248

Query: 218 AVNRIQ 223
              + +
Sbjct: 249 TSTQAE 254


>gi|71908721|ref|YP_286308.1| LuxR response regulator receiver [Dechloromonas aromatica RCB]
 gi|71848342|gb|AAZ47838.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas
           aromatica RCB]
          Length = 202

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---RSSAARNLTE 176
            P+ +   + G   F        NE ++       ++        ++    S     LT+
Sbjct: 89  VPMAVSALQRGACDFI--EKPFHNEDLLSRIQRALELDNQLSARRQRDGVISHRLDQLTQ 146

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           RE   +QL   G  +++IA++L +S+ TV A+      K+      + +
Sbjct: 147 REREVMQLVVAGKLNKQIADELNISMKTVEAHRARVMEKMGVRTLAELV 195


>gi|320095650|ref|ZP_08027309.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977423|gb|EFW09107.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 216

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A  L +S+ TV  ++ +   KL   NR +    A++ 
Sbjct: 154 DLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHVSAVLRKLQLSNRHELTRWAMQR 213

Query: 232 GYI 234
             +
Sbjct: 214 HIV 216


>gi|302340566|ref|YP_003805772.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637751|gb|ADK83178.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 214

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++LT+RE    +L   GY + EIA++L ++  TV  Y+ S   KL   NR + I  A R 
Sbjct: 153 KDLTKREKEIFKLISRGYDNTEIADELCIAYQTVRNYVSSIISKLGIKNRYEIIKLANRM 212


>gi|300741965|ref|ZP_07071986.1| two-component system response regulator TcsR2 [Rothia dentocariosa
           M567]
 gi|300381150|gb|EFJ77712.1| two-component system response regulator TcsR2 [Rothia dentocariosa
           M567]
          Length = 210

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L    +G+++  +    LA    I    A   V+   L   +  +     LTERET  L+
Sbjct: 103 LAAGASGFMVKDTSASQLAEG--IRRVHAGMHVVDPALA-AESLAYGESPLTERETEILR 159

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +AG G T+  I E+L LS  TV  +L SA  KL+A NR +AI  A   G++
Sbjct: 160 VAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGWL 210


>gi|320007550|gb|ADW02400.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 227

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  +     LT RE     LA  G T++EIA  + +S  T   ++  A  KL A +R Q
Sbjct: 145 DRATAPGLETLTRREREATALAARGLTNDEIAVHMVVSPLTAKTHISRAMTKLRARDRAQ 204

Query: 224 AIAKAIRFGYI 234
            +  A   G +
Sbjct: 205 LVVFAYESGLV 215


>gi|251777972|ref|ZP_04820892.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082287|gb|EES48177.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 243

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +        LT RE   ++L   G T++EI  KL +S  TV  ++ +   KL   +R+
Sbjct: 171 FNEDLFFLENKLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRL 230

Query: 223 QAIAK 227
           + +  
Sbjct: 231 EVVIF 235


>gi|254519013|ref|ZP_05131069.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912762|gb|EEH97963.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 214

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +++E   ++   +G T++EI+EKL LS  T+   + +   KL+  +R Q    A +   +
Sbjct: 154 SDKELQIIKYIAEGLTNKEISEKLYLSEGTIKNNITNILAKLNLRDRTQIAIFAFKNRIV 213


>gi|188590713|ref|YP_001921256.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500994|gb|ACD54130.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 243

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +        LT RE   ++L   G T++EI  KL +S  TV  ++ +   KL   +R+
Sbjct: 171 FNEDLFFLENKLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRL 230

Query: 223 QAIAK 227
           + +  
Sbjct: 231 EVVIF 235


>gi|148560164|ref|YP_001258354.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC
           25840]
 gi|148371421|gb|ABQ61400.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC
           25840]
          Length = 213

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +   +  R LT ++T  L +  +G  +++IA +LG+S  TV A++ +   KL   +R QA
Sbjct: 140 ESLIARLRTLTPQQTRVLTMLTEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQA 199

Query: 225 IAKAIRFG 232
           +    R G
Sbjct: 200 VILLSRIG 207


>gi|1724131|gb|AAB38509.1| putative response regulator [Rhodobacter sphaeroides]
          Length = 212

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +   +   +LTER+ +       G +++ IA +L L   TV  ++ +   KL A NR +
Sbjct: 136 EESHMAVNEHLTERQRAVCDAVRRGKSNKIIAGELNLCESTVKVHIRNIMKKLGAKNRTE 195

Query: 224 AIAK 227
           A  K
Sbjct: 196 AAFK 199


>gi|329957447|ref|ZP_08297922.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328522324|gb|EGF49433.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 238

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +   +L+ RE   L L   G  ++EIA+KL +S+ TV  +  +   KL   +       A
Sbjct: 168 ADDHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYA 227

Query: 229 IRFGYI 234
           +  GYI
Sbjct: 228 VMHGYI 233


>gi|312138001|ref|YP_004005337.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311887340|emb|CBH46651.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 771

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSA 170
           G+  P           +        A +  +            Y  + D L        A
Sbjct: 647 GVVIPALRSNRDEARTLCEGALGARAFDTAVRRGCELTLDEVVYFAVADRLPEAAPTERA 706

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A +LT RE    +L   G T++ IAEKL +S  TV  ++     KL   +R Q  A  + 
Sbjct: 707 ASDLTPREQEVAELVAQGLTNKAIAEKLVISQRTVQGHVEHVLAKLGFNSRTQIAAWVVE 766

Query: 231 FG 232
            G
Sbjct: 767 RG 768


>gi|298247821|ref|ZP_06971626.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550480|gb|EFH84346.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 201

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +         +    A  +V+   L L    S  +  LTERE + L  A +G +  +IA 
Sbjct: 105 DAPSAQLATAVRRAMAGERVVDPTLALS-ALSEGSNPLTERERTVLAAATEGASIAQIAA 163

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           KL LS  TV  YL  A  KL   NRI+A  KA + G++
Sbjct: 164 KLFLSEGTVRNYLSVAIQKLGVRNRIEAARKAEQKGWL 201


>gi|258652794|ref|YP_003201950.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258556019|gb|ACV78961.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 562

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 56/210 (26%), Gaps = 7/210 (3%)

Query: 27  RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86
               R  A                  +L        ++  I      D  L         
Sbjct: 349 LAGHRGPAYGRAPVLRALVDVAVEAHDLDRARGACAELSQIARRWGSDGLLAAAAQADGV 408

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE-V 145
           +     +    +        R      P+       R        +    +      E  
Sbjct: 409 VAVAGGRPADAVAPLRDAVARWRELEAPYDC----ARTRTVLAEALAALGDNSSARLERQ 464

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
             E        + D   L     + A    LT RET  L L   G T+ ++A+ L +S  
Sbjct: 465 AAERTLTVLGAVVDLRRLAGGPGTTASPGGLTARETEILALVARGDTNRQVAQALVISEK 524

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  +L +   KL    R  A+A A R G 
Sbjct: 525 TVARHLANVHRKLGVSTRTAAVAWARRNGL 554


>gi|239928142|ref|ZP_04685095.1| LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC
           14672]
          Length = 180

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                +       L+ RE   L+      ++EEIA  L +SV+TV  +L SA  KL    
Sbjct: 107 ARHAHRPPPVVEELSGRERDVLRRLALMMSTEEIAADLYVSVNTVKTHLKSAYRKLSVSR 166

Query: 221 RIQAIAKAIRFGYI 234
           R +A+ +A   G +
Sbjct: 167 RNEAVRRARELGLL 180


>gi|254523232|ref|ZP_05135287.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720823|gb|EED39348.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 216

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F   +       ERE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 141 RARYRFHDEAPPTDTFGEREVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGT 200

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 201 RDRTRAVLKAITLRII 216


>gi|330468505|ref|YP_004406248.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328811476|gb|AEB45648.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 192

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   L+ A +G   +EIA +L L+  TV  +L +   K    NR++A+ +A
Sbjct: 127 PPGSPLTRREAEVLRAAAEGLPLKEIARRLFLAHGTVRNHLSAVMRKTGTRNRMEAVWQA 186

Query: 229 IRFGYI 234
            R G+I
Sbjct: 187 RRHGWI 192


>gi|296131220|ref|YP_003638470.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
 gi|296023035|gb|ADG76271.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
          Length = 201

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
                  T+    +                 D      +   A  +L+ RE+  +     
Sbjct: 70  GGSAARRTAPRRDVTPSARYRLT-LSTVARDDAPPAPHRGHDAVADLSPRESQVMACVAR 128

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           G  + EIA +LG++V TV  ++     KL    R++A+
Sbjct: 129 GMRNTEIAAELGVTVKTVKNHVNRIFGKLGVDGRVEAV 166


>gi|255606123|ref|XP_002538507.1| Response regulator gacA, putative [Ricinus communis]
 gi|223511807|gb|EEF23876.1| Response regulator gacA, putative [Ricinus communis]
          Length = 268

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            L+  + +    + L+ RE    +L  +G  +E+IA+ L LSV TV  Y  +   KL   
Sbjct: 192 ALQTLEDKGDPMQQLSAREFEIFRLLAEGKETEDIAQALKLSVKTVANYQTTIKQKLGIT 251

Query: 220 NRIQAIAKAIRFGYI 234
           + ++ +  AIR G I
Sbjct: 252 SPVEMVRLAIRHGVI 266


>gi|221638139|ref|YP_002524401.1| response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|332560166|ref|ZP_08414488.1| LuxR family protein [Rhodobacter sphaeroides WS8N]
 gi|221158920|gb|ACL99899.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|332277878|gb|EGJ23193.1| LuxR family protein [Rhodobacter sphaeroides WS8N]
          Length = 187

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 49/179 (27%), Gaps = 14/179 (7%)

Query: 56  NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115
           +Y  D  +          D  +    S      W  + E+                    
Sbjct: 23  SYREDWIEYYTEKGYVIYDPTIRWALSETGHRRWSDLAEQDSRG-----VFAAAAQFDLR 77

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
            G+               F        +  +         + + F  L +        LT
Sbjct: 78  FGVTCS-WGTRESRSLGSFARSDREFTDREV-------ELIFSLFQRLHELTQPPQE-LT 128

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   L+    G      A KLG+S   + A + SA  +L A    +AI +A  +  I
Sbjct: 129 QPQIEALRCIAGGDRHAAAAMKLGISESALKARIASARQRLGARTTAEAIQRAKEYRLI 187


>gi|218129118|ref|ZP_03457922.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697]
 gi|217988753|gb|EEC55072.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697]
          Length = 192

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +    +L+ RE   L L   G  ++EIA+KL +S+ TV  +  +   KL   +       
Sbjct: 121 TPDNHDLSAREIEVLALITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIY 180

Query: 228 AIRFGYI 234
           A+  GY+
Sbjct: 181 AVMHGYV 187


>gi|299134073|ref|ZP_07027266.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
 gi|298590820|gb|EFI51022.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
          Length = 225

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 156 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIVAAK 212


>gi|239944489|ref|ZP_04696426.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL
            15998]
 gi|239990948|ref|ZP_04711612.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL
            11379]
          Length = 1049

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 173  NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             LT RE    +L   G+T+ +IAE+L +S  T + ++ +   KL   +R +A A A R  
Sbjct: 985  GLTPREQDVHRLVAAGHTNRKIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRLR 1044

Query: 233  Y 233
             
Sbjct: 1045 L 1045


>gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
          Length = 242

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            + T RE S LQL  +G  ++EIA KL  S+  V  Y+    +K    +R + +  A+  
Sbjct: 179 PSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALEN 238

Query: 232 GYI 234
             +
Sbjct: 239 HLV 241


>gi|111224247|ref|YP_715041.1| LuxR family transcriptional regulator [Frankia alni ACN14a]
 gi|111151779|emb|CAJ63499.1| Putative LuxR-family transcriptional regulator (partial) [Frankia
           alni ACN14a]
          Length = 137

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 4/129 (3%)

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV----IIEAHGACYQVITDFLELFK 165
               PF     P      +    +   E L L+ ++    +       Y ++        
Sbjct: 8   RASGPFTTENQPTDARTQRERVRLAQIELLELSAQLTTPHLRRQILRIYSLLRSEPVTQS 67

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT RE   L L   G ++ E AE+L +   TV  Y+ S   K+   NR  A+
Sbjct: 68  PAKPPPFRLTLREMEVLTLVATGCSNVEAAEQLTIRAETVKTYMRSIMRKMGVRNRTAAV 127

Query: 226 AKAIRFGYI 234
             A + G +
Sbjct: 128 HTARQIGLL 136


>gi|56479349|ref|YP_160938.1| LuxR family DNA-binding response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56315392|emb|CAI10037.1| DNA-binding response regulator, LuxR family [Aromatoleum aromaticum
           EbN1]
          Length = 215

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  +T RE   LQL  +GYTS  IA++L L+  TV  +  +   KLD  +  +    AIR
Sbjct: 148 APRITARERQVLQLIAEGYTSTRIADRLHLAPSTVEVHRRNIMRKLDLHSVAELTKYAIR 207

Query: 231 FGY 233
            G 
Sbjct: 208 SGI 210


>gi|298283596|gb|ADE09301.2| transcriptional regulator AsaR [Aeromonas salmonicida subsp.
           achromogenes]
          Length = 149

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 2/137 (1%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S+ +      LI        +  Y     +    ++  +   +                
Sbjct: 14  TSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAYTANHML 73

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETV-IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             D  +       LPI W  + E    ++      +RL        GI+FP+     +NG
Sbjct: 74  ACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMRLAAEFGLRNGISFPLHGAAGENG 133

Query: 131 YVIFTSEFLMLANEVII 147
            + F +     + ++++
Sbjct: 134 ILSFITPER-ASRDLLL 149


>gi|323525472|ref|YP_004227625.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323382474|gb|ADX54565.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 292

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 29/230 (12%)

Query: 11  SSSLQELSPRLHLIQNRIKA-RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +     L   L  I    +         +   L       L+ +  ++          L+
Sbjct: 10  AERRDGLKALLRQINRLARFNEGQDWRQVERTLKRQWPDLLVIDWQDWMS--VKDVRHLL 67

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
             Y D  +      + P +   + +E V     + +       +  A     +   +  +
Sbjct: 68  SHYPDLRIAVLTDKISPKVVGELMDEGVRGVVARETDPCL---IVRAFEMVLLGGHYVPS 124

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQL 184
           G +        L  +  I                 +K     R      L+ R+   ++ 
Sbjct: 125 GALPL---NPPLPADTAIR-------------PFDEKNPPPRRARLSNGLSPRQEQIMRC 168

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T++ IA  LG+S  TV  +L S   +L A NR  A+  A+  G++
Sbjct: 169 VHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|239987130|ref|ZP_04707794.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 242

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L     G+ ++ IAE+L +S  TV  ++  A  KL A +R Q +  
Sbjct: 171 AERLAALTGREREVLVQVAGGHPNDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 230

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 231 AYESGLV 237


>gi|213616370|ref|ZP_03372196.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 109

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A   ++  +     ++    D+L   +  S   + L+ R+   LQ+   G ++++
Sbjct: 11  PRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQ 70

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +LD  NR QA   
Sbjct: 71  IGRALNISTGTVKAHLESLYRRLDVKNRTQAAMM 104


>gi|158317367|ref|YP_001509875.1| ATP-dependent transcription regulator LuxR [Frankia sp. EAN1pec]
 gi|158112772|gb|ABW14969.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Frankia sp. EAN1pec]
          Length = 1383

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%)

Query: 165  KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            + R   A  L+ERE + L       T+ EIA ++ +SV+TV  +L S   KLD   R  A
Sbjct: 1314 EHRPEPAERLSERELAVLSYLPTMLTTAEIAAEMYVSVNTVKTHLKSIYRKLDVARRRDA 1373

Query: 225  IAKAIRFGYI 234
            + +A     +
Sbjct: 1374 VHRARALHLL 1383


>gi|159044443|ref|YP_001533237.1| putative response regulator receiver protein [Dinoroseobacter
           shibae DFL 12]
 gi|157912203|gb|ABV93636.1| putative response regulator receiver protein [Dinoroseobacter
           shibae DFL 12]
          Length = 204

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                  AR L+ERE   L     G +++EIA +L L   T+  ++ +   K+DA NR  
Sbjct: 134 ETPDIPLARQLSEREHQVLGGLCRGLSNKEIARELDLQEVTIKLHVKTLCRKIDAKNRTH 193

Query: 224 AIAKAIRFGY 233
           A       G 
Sbjct: 194 AAMIGKEAGL 203


>gi|261880311|ref|ZP_06006738.1| transcriptional regulator [Prevotella bergensis DSM 17361]
 gi|270333001|gb|EFA43787.1| transcriptional regulator [Prevotella bergensis DSM 17361]
          Length = 318

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             +  NL+ RE   +     G T++EIA+ L +S++TV  +  +   KL   +       
Sbjct: 245 PGSQENLSGREKDVIIALVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIY 304

Query: 228 AIRFGYI 234
           AI    +
Sbjct: 305 AIVNNLV 311


>gi|254500296|ref|ZP_05112447.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222436367|gb|EEE43046.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 246

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA--IRF 231
           LT ++   L +  +G  +++IA +L +S  TV A++ +   KL   +R QA+  A  I  
Sbjct: 172 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASKIEA 231

Query: 232 G 232
           G
Sbjct: 232 G 232


>gi|110680738|ref|YP_683745.1| LuxR family DNA-binding response regulator [Roseobacter
           denitrificans OCh 114]
 gi|109456854|gb|ABG33059.1| DNA-binding response regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 204

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            + L+ RE   L    +G +++EIA  L L   T+  ++ +   KLDA NR QA   A  
Sbjct: 141 TKKLSRREKQVLSGLCNGKSNKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARN 200

Query: 231 FGY 233
            G+
Sbjct: 201 AGF 203


>gi|146301956|ref|YP_001196547.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
 gi|146156374|gb|ABQ07228.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
          Length = 251

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L++   G  S+EIA  L +S +TV+ +  +   K+   N  +A   A++  +
Sbjct: 191 LSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAEACTLAVKLKW 250

Query: 234 I 234
           I
Sbjct: 251 I 251


>gi|78357716|ref|YP_389165.1| two component LuxR family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220121|gb|ABB39470.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 215

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    ++ RE   L+L   G  ++EIA +L +S  TV  +  S   KL   +  +    
Sbjct: 147 ANPIDTISVREKQVLKLIARGMGNKEIAAELCISHKTVEKHKASLKRKLRVNSNAEMATL 206

Query: 228 AIRFGYI 234
           ++ +G +
Sbjct: 207 SMEYGLL 213


>gi|15598616|ref|NP_252110.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9949559|gb|AAG06808.1|AE004763_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 827

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193
              L     +       ++     +LF             L+ RE + L L   G +++E
Sbjct: 726 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 785

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I E+L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 786 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 826


>gi|298244512|ref|ZP_06968318.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297551993|gb|EFH85858.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1045

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 170  AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
                L+ +E   LQ    G+T++EIA++L +SV+TV  ++     KL   NR+QA   A 
Sbjct: 981  PFEPLSPQEQRVLQFLVAGHTNQEIAKELVISVNTVKDHVKHLYRKLGVSNRLQAYEAAH 1040

Query: 230  RF 231
              
Sbjct: 1041 HL 1042


>gi|56461106|ref|YP_156387.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56180116|gb|AAV82838.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 210

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++ +     LT ++   L    +G  +++IA +LG++  TV A++ +   KL   +R Q
Sbjct: 141 DQQLAQKVSELTPQQYRVLHFLHEGLLNKQIAYQLGITEATVKAHITAIFRKLGVYSRTQ 200

Query: 224 AIAKAIRFGY 233
           A+  A R   
Sbjct: 201 AVLVAERLQL 210


>gi|73749249|ref|YP_308488.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660965|emb|CAI83572.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 238

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L E+E   L L   GY++++I  KL  +  TV  Y+ +   KL   NR Q    A   G 
Sbjct: 178 LNEKEKIILHLLAKGYSNKDIGHKLEYTPSTVKKYVYNCMKKLGVSNRTQLAILANNNGL 237


>gi|300723489|ref|YP_003712794.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus nematophila ATCC 19061]
 gi|297630011|emb|CBJ90646.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus nematophila ATCC 19061]
          Length = 219

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  ++ +    L+ERE   + +   G    EI+  L LS  TVN+Y      KL+
Sbjct: 133 MALNQLLPQKENPLDGLSERELQIMTMITQGRKVNEISTLLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 IKGDVELTHIAIRCGLL 209


>gi|293115534|ref|ZP_06604529.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM
           2876]
 gi|292809348|gb|EFF68553.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM
           2876]
          Length = 211

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            + +TE+E   ++L  DG +++EIA +L L   TV  Y  S   KL+  +R Q +  
Sbjct: 151 GKGITEKEFEIIKLVADGLSNKEIASRLYLGEGTVRNYFSSILDKLELRDRTQLVVY 207


>gi|229070683|ref|ZP_04203919.1| Two-component protein Kinase [Bacillus cereus F65185]
 gi|228712450|gb|EEL64389.1| Two-component protein Kinase [Bacillus cereus F65185]
          Length = 581

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +   S A    LT RE   LQL   G     IA +L LS  TV  
Sbjct: 494 QGMSHKIFEKFDEQKETPQSKAAVYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 553

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 554 YASTAYTKLGVCNKEEAVQKALEIGII 580


>gi|111221722|ref|YP_712516.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111149254|emb|CAJ60939.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 181

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 160 FLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            + L +  +       LT++E   L+L  +G T+ +IA ++ L+  TV  Y+ S   KL 
Sbjct: 106 LVRLREGPAEDERLAGLTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLAKLG 165

Query: 218 AVNRIQAIAKAIRF 231
             +R QA   A R 
Sbjct: 166 LESRTQAAVFATRL 179


>gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 222

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            LTERE   L+    G T+++IA+ L LS  TVN +L    VKL    R  A + A+
Sbjct: 160 QLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216


>gi|298248902|ref|ZP_06972706.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546906|gb|EFH80773.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L     G  S+EI  +LG++  TV +YL S   KL+  +R  A+A AI  G
Sbjct: 157 QLTEREQEVLAGIAAGERSKEIGARLGITRRTVESYLNSIYTKLNVDSRAAAVAVAIERG 216

Query: 233 YI 234
            +
Sbjct: 217 LL 218


>gi|268609438|ref|ZP_06143165.1| two component LuxR family transcriptional regulator [Ruminococcus
           flavefaciens FD-1]
          Length = 209

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 37/71 (52%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + + ++     + A+  ++++E   L+L  +G +++EI+ +L LS  TV  Y+ S   KL
Sbjct: 131 LPELMKPKSDFNYASYGISDKEKEILELVAEGKSNKEISSELFLSEGTVRNYISSLLDKL 190

Query: 217 DAVNRIQAIAK 227
              +R Q    
Sbjct: 191 SLRDRTQLAVF 201


>gi|34540945|ref|NP_905424.1| LuxR family transcriptional regulator [Porphyromonas gingivalis
           W83]
 gi|34397260|gb|AAQ66323.1| transcriptional regulator, LuxR family [Porphyromonas gingivalis
           W83]
          Length = 199

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +  +  +  + E      ++    LE  +      + LT RE   +     G T++EIAE
Sbjct: 96  DDTLSVHATVEELKQLLERLYQKTLEPEE-SGEEQQTLTNREKEIVVGVVKGMTNKEIAE 154

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LS HTV  +  +   KL   +       AI    +
Sbjct: 155 ELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKLV 192


>gi|87122198|ref|ZP_01078081.1| response regulator GacA [Marinomonas sp. MED121]
 gi|86162518|gb|EAQ63800.1| response regulator GacA [Marinomonas sp. MED121]
          Length = 197

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              ++    +   +  S    +L++RE    Q+  D    ++IAEKL LS  TVN Y   
Sbjct: 110 VAQKMALSQMSKEEGESP-LDSLSDRELQIAQMIVDCRKVQDIAEKLNLSAKTVNTYRYR 168

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   + ++    A+R   +
Sbjct: 169 LFEKLSIGSDVELARLAMRHNLL 191


>gi|329946343|ref|ZP_08293910.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328527319|gb|EGF54317.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 232

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                    + +   L++RE   + L G   ++ EIA+ L L+  T+ ++L     KL+ 
Sbjct: 153 SVRRADAVHTESIGALSDREKEIVTLVGRAMSNAEIAQHLVLAESTIKSHLNRILHKLEL 212

Query: 219 VNRIQAIAKAIRFGYI 234
            +R Q I  A   G +
Sbjct: 213 RDRAQLIVLAYESGLV 228


>gi|307941458|ref|ZP_07656813.1| glycerol metabolism activator [Roseibium sp. TrichSKD4]
 gi|307775066|gb|EFO34272.1| glycerol metabolism activator [Roseibium sp. TrichSKD4]
          Length = 228

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +L +S  TV A++ +   KL   +R QA+  A R
Sbjct: 152 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASR 208


>gi|255535277|ref|YP_003095648.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
 gi|255341473|gb|ACU07586.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
          Length = 226

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 156 VITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           VI D L L +    A  +    L+ RE   L+L    +++E+I E+L +S  TV A+  +
Sbjct: 140 VIMDNLMLPEDLMDAKDDNKPVLSGRELEVLKLIAKEFSNEQIGEQLFISERTVEAHRRN 199

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
             +K    + +  I  AI  G +
Sbjct: 200 IFMKTKTKSIVGLIKYAITEGIV 222


>gi|254294922|ref|YP_003060945.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Hirschia baltica ATCC 49814]
 gi|254043453|gb|ACT60248.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Hirschia baltica ATCC 49814]
          Length = 905

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           Q ++  L   ++R  A   LT  E   L    +G +++EIA    +S +TV   L S   
Sbjct: 820 QTVSKALSQRRRRDDAEGALTSGELEILNYLNNGLSNKEIARLTSISPNTVKFRLKSVFK 879

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KLD   R  A+  A   G +
Sbjct: 880 KLDVSKRRDAVMIAREKGLV 899


>gi|116694767|ref|YP_728978.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529266|emb|CAJ95613.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 901

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L++   GY +  IA+KL LS  TV ++L     KL A +R +A+A     
Sbjct: 838 DPLTGRELEVLRMLSAGYRNRVIAQKLFLSELTVKSHLRRIHAKLGAQSRTEAVALGRAR 897

Query: 232 GYI 234
           G I
Sbjct: 898 GLI 900


>gi|86740943|ref|YP_481343.1| ATP-dependent transcription regulator LuxR [Frankia sp. CcI3]
 gi|86567805|gb|ABD11614.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Frankia sp. CcI3]
          Length = 914

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 145 VIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           ++  AH    +     +    ++  +    L  RE   L+L   G +++EIA  LGL+++
Sbjct: 823 LLATAHADAERAAIPIIDRPAERNPAPEEPLNAREIDILRLLDRGLSNKEIARNLGLTIN 882

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV  YL S   KL    R +++++A R   +
Sbjct: 883 TVKWYLKSIYTKLGVARRGESVSEARRRRIL 913


>gi|881487|gb|AAA68948.1| GacA [Pseudomonas aeruginosa PAO1]
          Length = 213

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAARN 173
           FP RL     GY+   +  E ++ A   +          I   L L     ++  S   +
Sbjct: 89  FPTRLMQAGAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDS 148

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE     +  + +  + I++KL LS  TVN Y      KL   + ++    A+R G 
Sbjct: 149 LSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGM 208

Query: 234 I 234
           +
Sbjct: 209 V 209


>gi|115523030|ref|YP_779941.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115516977|gb|ABJ04961.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 221

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 152 ACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              QVI    +   ++R++ A  L+ RE   ++L   G T++EIA  + +S  TV  Y+ 
Sbjct: 130 FATQVIAALRDTSLRRRAAEAVKLSIREQQIVRLLLKGKTNKEIAHAISISDKTVKHYMT 189

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
               KL   NR++ +  A + 
Sbjct: 190 ILMQKLQVRNRLEVVIAAQKL 210


>gi|302039113|ref|YP_003799435.1| putative sensory transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
 gi|300607177|emb|CBK43510.1| putative Sensory transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
          Length = 235

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            A   L ERE   L+    G + ++IA+ L +S  TV  ++     KL A +R+QA+A A
Sbjct: 166 PALLPLGEREREILRGLAAGKSGKDIADLLCISPVTVRNHIQHILEKLGAHSRLQALAIA 225


>gi|295700518|ref|YP_003608411.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439731|gb|ADG18900.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 223

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 12/131 (9%)

Query: 115 FAGIAFPV--RLGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFK 165
            AG+  PV    G+      +   +   L           +++A    + +    LE  +
Sbjct: 86  NAGLGIPVVFITGYGDVASSVTAMKGGALDFLTKPFEDHELLDAIQRAFAIDKQRLERER 145

Query: 166 KRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +    A  +LT RE   + L   G  +++IA  L L   TV  +      K+ A    
Sbjct: 146 SLAEVSRAHESLTPREREVMTLVISGLMNKQIAATLNLQEITVKVHRSQVMKKMKARTLP 205

Query: 223 QAIAKAIRFGY 233
             +  A   G 
Sbjct: 206 DLVRMAEALGI 216


>gi|229107368|ref|ZP_04237236.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228676097|gb|EEL31074.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 194

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E   LQL  DGY  +EIA  L  S  T++ ++     KLD  + ++A+ K I+ 
Sbjct: 128 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHIFDKLDVSSSLEAVTKGIKS 187

Query: 232 GYI 234
           GYI
Sbjct: 188 GYI 190


>gi|269125504|ref|YP_003298874.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310462|gb|ACY96836.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 203

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D +   +  S A   L+ RE   + L   G ++ EIA +L LS  TV  ++     KL  
Sbjct: 111 DLIRALRDASRARHGLSAREAEVMDLIATGRSNGEIARQLFLSEKTVKNHVNRIYAKLGV 170

Query: 219 VNRIQAIAK 227
            +R  AIA 
Sbjct: 171 TSRASAIAL 179


>gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 227

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 73/223 (32%), Gaps = 8/223 (3%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +       +Q  ++   F +   +   +  +  +++     + +  +   D    L +
Sbjct: 8   VDDEPGLREAVQAYLEDSGFTVDVASNAKAGWELLQQRIPDLVISDIMMPEVDGYQFLAQ 67

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D         ++ +  + + ++ +   +  +   L     P   +A    L   K  
Sbjct: 68  LREDP--RFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLLTRKEA 125

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
                +  +      + E       ++       +   +   + T RE S L L   G  
Sbjct: 126 KDANATTDIADLANQVAEIRAI---LMNRAPLPTQNTPTVKIDFTPREQSVLDLVAVGLM 182

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++EIA +L  SV  V  Y+     K    +R + +  A+  G 
Sbjct: 183 NKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALENGL 225


>gi|21240910|ref|NP_640492.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106187|gb|AAM35028.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 210

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F+ + +     +ERE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 135 RARYQFRDQQAPRETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGI 194

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 195 RDRTRAVLKAITLRVI 210


>gi|302532622|ref|ZP_07284964.1| two-component system response regulator [Streptomyces sp. C]
 gi|302441517|gb|EFL13333.1| two-component system response regulator [Streptomyces sp. C]
          Length = 226

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 152 ACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              +     L       +           L++RE   L L  DG ++ +I  ++ LS  T
Sbjct: 124 MSPKASRALLRGHPGAGAPQDADVARVGLLSDRERDVLVLIADGLSNADIGTRIHLSQGT 183

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++ S   KL   +R+QA   A R G +
Sbjct: 184 VKDHVSSILTKLRVTSRVQAALLAERAGLL 213


>gi|260187493|ref|ZP_05764967.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260205793|ref|ZP_05773284.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           K85]
          Length = 69

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT  E     L G+G +++EI  +L +S  TV+++L     KL   +R+Q   +A R G
Sbjct: 1   ALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 60


>gi|256824328|ref|YP_003148288.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687721|gb|ACV05523.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 244

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + D     +++      LTERE    +    G ++ EIA++L ++  T+  ++G    KL
Sbjct: 151 VADVASPAEQQEYLREVLTEREYEVFEAVAAGLSNTEIAKELFVAEATIKTHIGRLLFKL 210

Query: 217 DAVNRIQAIAKAIR 230
              +R+Q +  A  
Sbjct: 211 GCRDRVQLVITAYE 224


>gi|188575417|ref|YP_001912346.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519869|gb|ACD57814.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 204

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 9/148 (6%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                      +      +  A +        H    V ++ +     N+ +        
Sbjct: 55  AAGDGHEAAWLMPPRPAAIGEARVPIHALGTTHGMLCVAWSEDRPAPGNDDVQALQAFAL 114

Query: 155 QVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +     E  K+  +  R          L++RE   L L   G T+  +A +LG++  TV
Sbjct: 115 LLPAMVAEPAKQIPTRRRKPLQDDRLGALSKREKQVLSLLPRGLTNASLAAELGIAPGTV 174

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              +     KL+  +R QA   A++   
Sbjct: 175 KVQVERILQKLEVKDRTQAAVYAVQSRL 202


>gi|78065985|ref|YP_368754.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966730|gb|ABB08110.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 263

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 8   GKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
           G+   SL +       + LI+  +   ++    +      P+                  
Sbjct: 15  GRLIESLDQPGFWLALIRLIEEYVAVDSWV--ALTFGDGRPQVFAECPYEGGGPDPLFRD 72

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
               +    D F           +++            +         +    + F V L
Sbjct: 73  YVQGLYQL-DPFYIANRDAPKSGLFRLSDVAPECFRDTEYYTLYFTHNVVEDEVQFNVVL 131

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFK--------KRSSAAR- 172
              +   +         + E +            ++   L            +R  A   
Sbjct: 132 DDARTLCLSL-GSKRRFSPEQVALLDLIRPWVAGLMRQRLAFEPASADHAPPRRPGAHDG 190

Query: 173 ----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                      LT RE   ++L   G +++E+A KL +S  TV  +  +   KL   ++ 
Sbjct: 191 FEQAMARLGTPLTARELDVIRLILSGRSNKEVANKLAISAETVKVHRRNIYGKLAINSQS 250

Query: 223 QA 224
           + 
Sbjct: 251 EL 252


>gi|145221325|ref|YP_001132003.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315441791|ref|YP_004074670.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213811|gb|ABP43215.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315260094|gb|ADT96835.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 214

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E+ ++       L+ RE   L L   G T   +A +L L+  TV  ++     KL   +R
Sbjct: 141 EIRRRAEPEGPALSPREREVLVLIAAGSTIPAMARELFLAPSTVKTHVQRLYEKLGVSDR 200

Query: 222 IQAIAKAIRFGYI 234
             A+A+A+R   +
Sbjct: 201 GAAVAEAMRRKLL 213


>gi|333027714|ref|ZP_08455778.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332747566|gb|EGJ78007.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 222

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +   +L+                         S+    LT RE   L     G +++EI
Sbjct: 118 AAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAALTGREREVLVQVAAGLSNDEI 177

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L +S  TV  ++  A  K+ A +R Q +  A   G +
Sbjct: 178 AARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 217


>gi|283787837|ref|YP_003367702.1| transcriptional regulator [Citrobacter rodentium ICC168]
 gi|282951291|emb|CBG90987.1| transcriptional regulator [Citrobacter rodentium ICC168]
          Length = 199

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+ R+   L +   G +++EI   L +S  TV A+L S   +LD  NR QA   
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAAML 195


>gi|238059977|ref|ZP_04604686.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881788|gb|EEP70616.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 232

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 135 TSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
                +LA  V+                 ++ +  ++    LT RE   L L G G ++ 
Sbjct: 119 ARGEPLLAPSVLARVVDRARRSHAADRNGDIEQPDTAVLAALTARERDVLSLVGVGLSNA 178

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA  L + V TV  ++ +   KL   NR+QA   A R G +
Sbjct: 179 EIARDLNVGVTTVKTHIVALLEKLGIRNRVQAGILAHRLGLV 220


>gi|291287073|ref|YP_003503889.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884233|gb|ADD67933.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 193

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L+L   G TS EI E L +S +TV+ +      KL+  N    +  A   G
Sbjct: 132 SLTSRECEILKLIASGKTSREIGEMLCISKNTVDTHRNKMLQKLNLANSASLVHYAFVSG 191

Query: 233 YI 234
            +
Sbjct: 192 LV 193


>gi|168699466|ref|ZP_02731743.1| two-component response regulator [Gemmata obscuriglobus UQM 2246]
          Length = 220

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARN--LTERETS 180
           L     GY + T+    L     I A     +VI   L ++       A    L+ RET 
Sbjct: 96  LAAGAAGYFLKTTPSPDLLA--AIRAVATGARVIDPALGDVLGGPPPPAERSQLSRRETE 153

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+L   G T +EIA++L LSV TV  Y      K     R   +   +  G +
Sbjct: 154 VLELLVKGLTHQEIADQLFLSVKTVETYRARLREKTGLKTRADYVRYGLEAGLL 207


>gi|57234151|ref|YP_181859.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224599|gb|AAW39656.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 247

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   L +   GYT++EI+  +  +  T+  Y+ S   KL+  NR  A   A+
Sbjct: 183 PQDVLSPRELEILIMVARGYTNKEISVNMDYAEITIKKYVKSILSKLNVSNRTLAGIAAV 242

Query: 230 RFGYI 234
           +FG +
Sbjct: 243 KFGLV 247


>gi|326388719|ref|ZP_08210310.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206793|gb|EGD57619.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 217

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++       LT  +   L    +G  +++IA  LG+S  TV A++ +   KLD  NR QA
Sbjct: 145 ERVRGTVAGLTPTQLKVLLAVLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQNRTQA 204

Query: 225 IAKAIRFGY 233
              A   G 
Sbjct: 205 ALAARSLGL 213


>gi|325109956|ref|YP_004271024.1| LuxR family transcriptional regulator [Planctomyces brasiliensis
           DSM 5305]
 gi|324970224|gb|ADY61002.1| two component transcriptional regulator, LuxR family [Planctomyces
           brasiliensis DSM 5305]
          Length = 231

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             + +         + A  L+ R+   L+    G+T +E+A  + LSV +V+++      
Sbjct: 150 HYLDEMSHGSHTGGTPAETLSVRQKEVLRYLALGHTVKEVAAMMHLSVKSVDSHKYRIMK 209

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KLD  +R+     AIR G 
Sbjct: 210 KLDLHDRVHLARYAIREGL 228


>gi|289644902|ref|ZP_06476947.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289505287|gb|EFD26341.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 222

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 15/155 (9%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----------EFLM 140
           +       S   +   +         +              I                L+
Sbjct: 55  LDARLEDGSGIDVCRDIRSAHPQVGCLILTSYDDDDALFASIMAGAAGYLLKQIKGTDLV 114

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAE 196
            A   I          +T  +    +   A  +    L+ERE   L L  +G T+ +IA 
Sbjct: 115 GAIHTIASGRSLLDPAVTQKVLARLREGPAEDSRLATLSEREREILLLIAEGLTNRQIAS 174

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++ LS  TV  Y+ +   KL+  +R QA   A + 
Sbjct: 175 RIHLSDKTVKNYVSAILDKLELTSRTQAAVYATKL 209


>gi|283138029|gb|ADB12476.1| NirZ [Methylomonas sp. 16a]
          Length = 202

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  + S A   L+ERE    QL   G +  +IA  L +S+ TV+ +  +  +KL+  +  
Sbjct: 135 LVTRPSPALDRLSERELEIYQLLVKGTSVSDIARTLNISIKTVSTHKSNLMLKLNVDSIA 194

Query: 223 QAIAKAIR 230
             +  ++R
Sbjct: 195 DLVRFSMR 202


>gi|311234756|gb|ADP87610.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris RCH1]
          Length = 250

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +R+     LT RE   L    +G+ + EIA+ L +S  TV  +  +   KL   + 
Sbjct: 167 ALEDRRTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSA 226

Query: 222 IQAIAKAIRFGY 233
            +  A A R G 
Sbjct: 227 AEVRAFAQRQGL 238


>gi|169828201|ref|YP_001698359.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992689|gb|ACA40229.1| comA, srfB, comAA; two-component response regulator. potential
           cognate sensor kinase is comP [Lysinibacillus sphaericus
           C3-41]
          Length = 208

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+++E   LQL   G T++ IA  +G++  TV  YL    VKL+  +R +A+  A    +
Sbjct: 147 LSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVAKEKAW 206

Query: 234 I 234
           I
Sbjct: 207 I 207


>gi|186470967|ref|YP_001862285.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197276|gb|ACC75239.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 231

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 7/139 (5%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--- 156
           S  +  +           +   V      +  V   +    ++ E+  +   A   +   
Sbjct: 89  SEDEQDLAAALRGGARGYLLKTVDSSAMADAIVRIMAGESTISPEMTGKLVSAFQALQPG 148

Query: 157 ----ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                     L         +L+ R+   L     G T++EIA  L ++  TV  ++   
Sbjct: 149 EVPPAASPSVLAPAVPDPIESLSARQEEILAHIARGETNKEIARALNIAETTVKIHVQQV 208

Query: 213 TVKLDAVNRIQAIAKAIRF 231
             KL   +R+QA   A+  
Sbjct: 209 LKKLKLASRVQAATYAVMR 227


>gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 242

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 17/230 (7%)

Query: 14  LQELSPRLHLIQNRIKARNFALY-TINSALDFPRRQQLI--CELHNYDLDSGDIPNILIE 70
           + +       +Q  ++   FA+   I+    + + QQ++    + +  +   D   +L  
Sbjct: 20  VDDEPGIRTAVQAYLEDEGFAVTTAIDGEEGWQKAQQIVPDVVISDVMMPRCDGYGLLKR 79

Query: 71  TYGD------DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
              D        +F    G+  I      +  V +   +     E        +      
Sbjct: 80  LREDERLGGTPVIFLTAKGMT-IDRTQGYQAGVDDYIPKPFDPDELIARVRNVV------ 132

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
              +   +   + F       + +       ++T   +   K+     N T RE S LQL
Sbjct: 133 -KRQERLLTEAARFADTDVSQMAKQITEIRSMLTQGDKNNSKKDLIIPNFTPREESVLQL 191

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G  ++EIA KL  S+  V  Y+    +K    +R + +  A+    +
Sbjct: 192 VAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENNLV 241


>gi|332304648|ref|YP_004432499.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332171977|gb|AEE21231.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 212

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN-- 173
                + F   G++  +S    +A  +    +       ++     E+     + A+   
Sbjct: 90  VVSYVMSFGAKGFIPKSSPTPTIAEALRSIMNGEVWLTDELKVQIAEIDSDEINLAQRIA 149

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT ++   L+L  DG  +++IA +L ++  TV A++ +   KL+   R QA+    +  
Sbjct: 150 ELTPKQFQVLKLIHDGLLNKQIAHELNVTEATVKAHISAVFRKLEVNTRTQAVLLLKKLN 209

Query: 233 Y 233
            
Sbjct: 210 L 210


>gi|288926074|ref|ZP_06420002.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
 gi|288337114|gb|EFC75472.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
          Length = 208

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 157 ITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
             D   L +  R+  A+ LT+RE   L L   G  ++EI E L + + TV  +  +   K
Sbjct: 125 HADGRNLPELPRALRAKILTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEK 184

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +       A+  GY+
Sbjct: 185 LGLKSVSALTIYAVMRGYV 203


>gi|288572878|ref|ZP_06391235.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568619|gb|EFC90176.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 216

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   LQL  +G ++ EIA  L LS  TV  +  S   KLD  N       AIR G
Sbjct: 150 ELTPREWEILQLVAEGRSTREIASSLNLSAKTVENHRQSVMNKLDLHNVADLTKYAIRCG 209

Query: 233 Y 233
            
Sbjct: 210 L 210


>gi|256829789|ref|YP_003158517.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578965|gb|ACU90101.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 219

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 152 ACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               ++ D+L +   R+      NLT RE   ++L  DG  S EIAE L +S+ TVN + 
Sbjct: 130 LAKIIVEDYLLVNHHRNSLPPLHNLTSREKEIVKLIIDGNKSREIAEILFISIKTVNKHR 189

Query: 210 GSATVKLDAVNRIQA 224
            +  VKL   N  + 
Sbjct: 190 SNILVKLGIHNLSEL 204


>gi|239815768|ref|YP_002944678.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802345|gb|ACS19412.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 213

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEI 194
              + +E ++EA     +      E  +  ++A      L+ERE   L     G T++EI
Sbjct: 112 EKPVDDEQLLEALQQAVRQHVRSRERSQADNAARERVAQLSEREREVLAFIVQGLTNKEI 171

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A  L LS  TV  +  +   KLD  +  Q I +
Sbjct: 172 ARTLALSPRTVETHRANLFAKLDCDSLAQLIRR 204


>gi|254467179|ref|ZP_05080590.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
 gi|206688087|gb|EDZ48569.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
          Length = 231

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     LT ++   LQL  +G  +++IA  L ++  TV A++ +   KL   +R Q
Sbjct: 151 SDDVLQRLSQLTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHITAIMRKLGVQSRTQ 210

Query: 224 AIAKAIRF 231
           A+  A + 
Sbjct: 211 AVLAAKQA 218


>gi|223938200|ref|ZP_03630096.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893072|gb|EEF59537.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 224

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   LQL  +G  +++IA+ L +S+ TV  +      KL+  +       AI  G 
Sbjct: 156 LTAREREVLQLIAEGRANKQIADDLAISIKTVEKHRQQVMNKLNIHDVASLTRYAISKGM 215

Query: 234 I 234
           +
Sbjct: 216 V 216


>gi|126348096|emb|CAJ89817.1| putative LuxR-family regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 987

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 10/155 (6%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIA-------FPVRLGFHKNGYVIFTSEFLMLA 142
              +   +  +    +           G         F +       G     +    + 
Sbjct: 825 AEAEWARIAGAGPDPAAWQRAVAGFAHGDVYERARCRFRLAEALLAAGRREEAAAEADIV 884

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLG 199
                       +   D L    + + A      LT RE   L+L   G ++ +I E+L 
Sbjct: 885 RREADRLGATLLRERLDGLARRGRLTGAREGAAVLTAREQDVLRLLALGRSNRQIGEELF 944

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  T + ++ +   KLDA +R +A+A A R G +
Sbjct: 945 ISAKTASVHVSNILAKLDAASRTEAVAVAYRQGLV 979


>gi|325286932|ref|YP_004262722.1| LuxR family two component transcriptional regulator [Cellulophaga
           lytica DSM 7489]
 gi|324322386|gb|ADY29851.1| two component transcriptional regulator, LuxR family [Cellulophaga
           lytica DSM 7489]
          Length = 215

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   L+L  + YT++EIA++L LS HT+ +Y  +   KL+  N       AI+ G
Sbjct: 152 SLTNREKEVLKLIAEEYTTQEIADELFLSKHTIESYRKNLISKLNVKNLAGLTKHAIKIG 211

Query: 233 YI 234
            +
Sbjct: 212 LL 213


>gi|313203941|ref|YP_004042598.1| transcriptional regulator [Paludibacter propionicigenes WB4]
 gi|312443257|gb|ADQ79613.1| transcriptional regulator [Paludibacter propionicigenes WB4]
          Length = 201

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   +     G T++EIA+ L LS HTV ++  + T KL+  +       AI    
Sbjct: 133 LSAREKEIIICVVKGLTNKEIAQTLFLSTHTVISHRRNITRKLEIHSTAGLTVYAIMNKL 192

Query: 234 I 234
           I
Sbjct: 193 I 193


>gi|290963130|ref|YP_003494312.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260652656|emb|CBG75789.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 219

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 140 MLANEVIIEAHGACYQ-----------VITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                ++IEA  A  +            +   L   +        LTERE    +L   G
Sbjct: 111 DAPPSLLIEAVRAAARGDALVSPAVTVRLLKHLSPTRPDPDVGSVLTERERDVARLVAVG 170

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T++EI ++L +S+ TV  +L +   K+DA NR++  A A   G +
Sbjct: 171 RTNQEICDRLVVSLSTVKTHLANIQQKIDARNRVEIAAWAWEQGVV 216


>gi|302518606|ref|ZP_07270948.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302427501|gb|EFK99316.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 226

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +   +L+                         S+    LT RE   L     G +++EI
Sbjct: 122 AAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAALTGREREVLVQVAAGLSNDEI 181

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L +S  TV  ++  A  K+ A +R Q +  A   G +
Sbjct: 182 AARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 221


>gi|89274998|gb|ABD65961.1| two-component system response regulator [Streptomyces fungicidicus]
          Length = 223

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 37/84 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               + + +   + +  ++ +  L+ R    ++    G T++EIA +L +S+ TV ++L 
Sbjct: 135 LRLLKHLNESQAMPRGGAARSSELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLS 194

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   NR +    A     +
Sbjct: 195 GIQTKLGVRNRTEIAVWAWENRVV 218


>gi|111220995|ref|YP_711789.1| LuxR family transcriptional regulator [Frankia alni ACN14a]
 gi|111148527|emb|CAJ60198.1| Putative LuxR-family transcriptional regulator [Frankia alni ACN14a]
          Length = 1436

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%)

Query: 158  TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                       +A   L++RE + L       T+ EIA +L +SV+TV  +L S   KLD
Sbjct: 1360 EPARRRPGGGPAAGDRLSDRELAVLSYLPTMLTTAEIAAELYVSVNTVKTHLKSIYRKLD 1419

Query: 218  AVNRIQAIAKAIRFGYI 234
               R  A+ +A     +
Sbjct: 1420 VPRRRDAVHRARELHLL 1436


>gi|310821461|ref|YP_003953819.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309394533|gb|ADO71992.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 218

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              +    F  L  K +    N   LT  E   L+    G ++ E+ E + L   TV  +
Sbjct: 131 IAKRFWNYFHSLQAKPAGKPENPWGLTPAEFEVLRYVAKGLSNAEVGEVMTLERRTVRTH 190

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     K+   + ++A+  A++ G +
Sbjct: 191 LSHIYRKMGVNSHVEAVVLALKAGVV 216


>gi|302539397|ref|ZP_07291739.1| two component transcriptional regulator [Streptomyces sp. C]
 gi|302448292|gb|EFL20108.1| two component transcriptional regulator [Streptomyces sp. C]
          Length = 220

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLA 185
             G  +        ++   + A     +++  F +L   R        +T RE   L   
Sbjct: 108 DTGPDLLAQAVRSASDGEALIAPSVTVRLLRAFADLPAGRPVAQPVSPVTAREEQVLLAV 167

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             G T+ EIA+ L +S+ TV  +L S   KL A NR++    A  
Sbjct: 168 ARGLTNTEIADALRISLSTVKTHLASLMAKLGARNRVEIAMWAYE 212


>gi|226362289|ref|YP_002780067.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240774|dbj|BAH51122.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 75

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L  RE   L     G  ++ IA +LG+S  TV  ++ S   KLD  NR +A A  IR G 
Sbjct: 4   LNPRELEVLAHLTVGKRNKAIASELGISESTVKFHVASVLQKLDVTNRGEAGAIGIRAGI 63


>gi|71282148|ref|YP_268761.1| LuxR family DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71147888|gb|AAZ28361.1| DNA-binding response regulator, LuxR family [Colwellia
           psychrerythraea 34H]
          Length = 208

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                +  +   +          LT+RE   L L  DG  S+ IA +L LS  T++++  
Sbjct: 125 FVSPSLAQEMAWMEDDSQKTDSLLTKREEEVLILIADGLGSDAIALRLDLSKRTIDSHRA 184

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL   N ++    AI  G I
Sbjct: 185 NIRKKLGLTNSVELTRYAIEQGLI 208


>gi|45443119|ref|NP_994658.1| two-component system response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|45437986|gb|AAS63535.1| response regulator [Yersinia pestis biovar Microtus str. 91001]
          Length = 257

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A   LT RE     L  +G    EIAE LGLS  TV+ +  +   KL   N ++   K
Sbjct: 196 AVDPLTRREREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 253


>gi|325964344|ref|YP_004242250.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470431|gb|ADX74116.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 226

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 28/219 (12%)

Query: 14  LQELSPRLHLIQNRIKARNFALY-----TINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           L +     + +++ ++A    +       + +    P  +  +  L     D   I    
Sbjct: 20  LDDHELVRYGLRDLLEAEGMQVAGESGSAVEAIRRIPALRPDVAILDGRLGDGTGIEVCR 79

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D  +              +      ++     +    G +               
Sbjct: 80  EVRAIDPGISCI----------ILTSYDDDQALQGAVLAGAAGYVLKQ------------ 117

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G          +A    + A G   + +   LE          +L+ +E   L L G G
Sbjct: 118 IGNNDLAGAIRRVARGESLFAPGVKERALNGLLEAAP-VDPRLESLSLQERKVLALVGQG 176

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            T+ +I ++L L+  TV  Y+ +   KL    R QA   
Sbjct: 177 MTNRQIGQELFLAEKTVKNYVSAMLAKLGFERRTQAAVY 215


>gi|312888593|ref|ZP_07748162.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311298907|gb|EFQ76007.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 307

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RE   + +       +EIAEKL +S  TVN ++ +   K++   R + + K
Sbjct: 249 ALSPRENDVVNMICQRLRYKEIAEKLFISERTVNKHVQNIFNKVEVTTRSELVRK 303


>gi|300693797|ref|YP_003749770.1| transcription regulator for hrp genes expression [Ralstonia
           solanacearum PSI07]
 gi|299075834|emb|CBJ35143.1| transcription regulator for hrp genes expression [Ralstonia
           solanacearum PSI07]
          Length = 174

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +    + + +   L  E      G   +     +E     S+    LT R+   L+ A  
Sbjct: 61  EAAGELPSGQLQPLTLEQTYAMLGRILEARRHGVEPRPDTSARLSALTPRQRDILREAAH 120

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G ++ EIA+ L +SV TV +++    ++L+A NR +  A 
Sbjct: 121 GKSNVEIAQTLHISVETVKSHVRQILMRLEARNRTELAAI 160


>gi|251789132|ref|YP_003003853.1| response regulator [Dickeya zeae Ech1591]
 gi|247537753|gb|ACT06374.1| two component transcriptional regulator, LuxR family [Dickeya zeae
           Ech1591]
          Length = 220

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+++L LS  TVN+Y      KL+
Sbjct: 135 MALSQLEPQTETPLECLSERELQIMLMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 194

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 195 INGDVELTHLAIRHGL 210


>gi|209518476|ref|ZP_03267298.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501109|gb|EEA01143.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 229

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF---------LELFKKRSSAARNLTE 176
              +GYVI  + F  L  E+ +   G                  L    + +     LT 
Sbjct: 99  AGADGYVIKDASFEELVGEMRLVMQGKRNPAFEQRAGNGVSCDPLPGVSRHAQLWHTLTT 158

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE + L+L  +G T+ ++ E L LS  T+  +  S   KLD  N    +  A+  G +
Sbjct: 159 RERAVLRLVAEGCTNRQVGEYLQLSPKTIEKHRASLMRKLDVTNVTGLVLIALDMGVL 216


>gi|217972053|ref|YP_002356804.1| LuxR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497188|gb|ACK45381.1| transcriptional regulator, LuxR family [Shewanella baltica OS223]
          Length = 221

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
               L       L    GI F       +   ++ T    M+A E+  +           
Sbjct: 82  ERDSLDQESAMLLGIR-GILF-----ADQRMDLMLTGLRKMVAEELWYDRTLLSKMFRRV 135

Query: 160 FLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
             +L       +        LT RE + +Q    G  ++EIA +L +S HTV A++ S  
Sbjct: 136 VQKLDGNNEMPSDTIAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIF 195

Query: 214 VKLDAVNRIQAIAKA 228
            K  + NR++ +  A
Sbjct: 196 RKTQSRNRVELLRWA 210


>gi|146343451|ref|YP_001208499.1| two-component LuxR family transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146196257|emb|CAL80284.1| putative two-component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 261

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +   G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 191 LTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 247


>gi|85059148|ref|YP_454850.1| response regulator [Sodalis glossinidius str. 'morsitans']
 gi|84779668|dbj|BAE74445.1| transcription regulator [Sodalis glossinidius str. 'morsitans']
          Length = 218

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQAETPFECLSERELQIMLMITRGQKVTDISEQLNLSPKTVNSYRYRIFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|120555133|ref|YP_959484.1| two component LuxR family transcriptional regulator [Marinobacter
           aquaeolei VT8]
 gi|120324982|gb|ABM19297.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 221

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I          S    +LT ++   L +  +G  +++IA  L +S  T+ A++ +   KL
Sbjct: 135 IERMQAETTDFSERLASLTPQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFRKL 194

Query: 217 DAVNRIQAIAKAIRF 231
              NR QA+  AI+ 
Sbjct: 195 GVRNRTQAV-IAIQQ 208


>gi|319427568|gb|ADV55642.1| transcriptional regulator of curli operon, CsgD [Shewanella
           putrefaciens 200]
          Length = 221

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
              ++ +      Q +    E+     +  + LT RE + +Q    G  ++EIA +L +S
Sbjct: 124 DRTLLSKMFRRVVQKLEGNNEMPSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCIS 183

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            HTV A++ S   K  + NR++ +  A
Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|315605040|ref|ZP_07880094.1| two component system response regulator [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313319|gb|EFU61382.1| two component system response regulator [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 216

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E+A  L +S+ TV  ++ +   KL   NR +    A++ 
Sbjct: 154 DLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHVSAVLRKLQLSNRNELTRWAMQR 213

Query: 232 GYI 234
             +
Sbjct: 214 HIV 216


>gi|294012227|ref|YP_003545687.1| NarL-like response regulator [Sphingobium japonicum UT26S]
 gi|292675557|dbj|BAI97075.1| NarL-like response regulator [Sphingobium japonicum UT26S]
          Length = 219

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               Q +   +      ++A   LTERE     L   G  + EIA + GL+  TV  +L 
Sbjct: 128 FVMEQALVHSISAPASEANALAALTERELEIAGLIRAGLRNREIASRCGLTEGTVKVHLH 187

Query: 211 SATVKLDAVNRIQAIAK 227
           S   KL+  +R + I  
Sbjct: 188 SIFQKLNIKSRSELIIM 204


>gi|271963445|ref|YP_003337641.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506620|gb|ACZ84898.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 226

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 39/86 (45%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           AH    Q+    +            LT RE   L L G+G ++ +IA +L L   TV A+
Sbjct: 130 AHRVITQLTGGRMTRVVAAREQVAALTPRERDVLALVGEGLSNGQIARRLYLVEGTVKAH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   +L A NR+QA   A   G +
Sbjct: 190 VSAILTRLGARNRVQAAILAHEAGLL 215


>gi|261409608|ref|YP_003245849.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286071|gb|ACX68042.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 216

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 150 HGACYQVITDFLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           H    + +T  L    +    +  L     T  E   + L  +G +++EIA +L LS  T
Sbjct: 127 HPDIARKLTGMLRPTPQPVPRSAELEQFGLTPAEKRVVALIAEGLSNKEIAAQLYLSEGT 186

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           V  Y+     KL+  +R Q    
Sbjct: 187 VKNYVTEILGKLNLRDRTQIAIF 209


>gi|326771911|ref|ZP_08231196.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638044|gb|EGE38945.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 233

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   + L G   ++ EIA+ L L+  T+ ++L     KL+  +R Q I  A   
Sbjct: 167 DALSDREKEIVTLVGRAMSNTEIAQHLVLAESTIKSHLNRILHKLELRDRAQLIVLAYES 226

Query: 232 GYI 234
           G +
Sbjct: 227 GLV 229


>gi|260575093|ref|ZP_05843094.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
 gi|259022715|gb|EEW26010.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
          Length = 267

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 10/228 (4%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILI 69
           + S+ E+          +              D           L     +   +     
Sbjct: 14  ARSVNEVWALSTPYYRDLGFARVNYSFTRFMTDTTLGDPADALFLTTSSPEYLRVFTRDR 73

Query: 70  ETYGDDFLFHFNSGLLPIIWQ---SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                         +    W+          + +    +VR    +   AGI        
Sbjct: 74  FYARTPLFHWALHNVGACTWRWVHEALAAGDLTADQAETVRSNIAMGVVAGITISFPSAA 133

Query: 127 HKN-GYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETS 180
            ++ G +    +        + I   HG     + + + L   +   A   RNLT+R+  
Sbjct: 134 PRSKGGLGLIGDTCLSHDDVDDIWANHGQPLLAVANMMHLKISQLPMATRRRNLTDRQRQ 193

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            L+   DG T+++I++ + +SV  V  +L  A   L+     QA+AKA
Sbjct: 194 ALEWVADGKTTQDISQLMRISVAMVEKHLRLAREALEVDTTAQAVAKA 241


>gi|116249431|ref|YP_765272.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254081|emb|CAK12478.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 959

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 5/146 (3%)

Query: 94  EETVIESSGQLSVRLEGGL--LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
            E V +S  +LS         +   G A          G+    ++        ++    
Sbjct: 811 WEAVAQSWAELSQPFRQAYALMQAGGAAVSAGQRAKGAGHFRRGADLAHSTGASLLGNQI 870

Query: 152 --ACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                +   D     +     A   LT+RE   L+L   G ++ EIA  L +S  T + +
Sbjct: 871 ETLAKKARIDLGNGKEGDMPKAPLGLTDREFEVLRLLAAGQSNREIAVNLFISSKTASVH 930

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL   +R  A A A R   +
Sbjct: 931 VSNILSKLSVPSRGAAAAMAHRLRIV 956


>gi|111021467|ref|YP_704439.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820997|gb|ABG96281.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 546

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +      F+   + +  LT RE   L+L   G ++  +A +L LS  TV  +L +  VKL
Sbjct: 465 LERLRAEFRPDPAVSTPLTPREVCVLRLVAAGKSNRAVATELFLSEKTVARHLSNIFVKL 524

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R  A A A     +
Sbjct: 525 GISSRSAATAYAYEHRLV 542


>gi|329928715|ref|ZP_08282564.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937496|gb|EGG33914.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 216

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 150 HGACYQVITDFLELFKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           H    + +T  L    +    +  L     T  E   + L  +G +++EIA +L LS  T
Sbjct: 127 HPDIARKLTGMLRPTPQPVPRSAELEQFGLTPAEKKVVALIAEGLSNKEIAAQLYLSEGT 186

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           V  Y+     KL+  +R Q    
Sbjct: 187 VKNYVTDILGKLNLRDRTQIAIF 209


>gi|307328219|ref|ZP_07607397.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886053|gb|EFN17061.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 229

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +          +          ++    ++E      +      E  ++ 
Sbjct: 98  AAVEAGACGYLLKSASGDEIASAIRSAAEGETLIPASTLVEVLARHREDARSTAEQNER- 156

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                ++T RE   L L   G  +  +AE+L +S  TV  ++     KLDA ++++A+A+
Sbjct: 157 ---LDSMTPREQEILTLMSQGLDNRAVAERLSISYATVRTHVRRILEKLDARSQLEAVAR 213

Query: 228 AIRFGY 233
           A  FG+
Sbjct: 214 AAEFGF 219


>gi|194289411|ref|YP_002005318.1| response regulator [Cupriavidus taiwanensis LMG 19424]
 gi|193223246|emb|CAQ69251.1| putative RESPONSE REGULATOR [Cupriavidus taiwanensis LMG 19424]
          Length = 210

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTER 177
            P+ +   K G + F  E     +E+         +  TD     ++R++      LT R
Sbjct: 96  VPMAVSTMKRGAIDFI-EKPFDESELRALVERMLQKARTDHSTAREQRAAKDLLGKLTTR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 EQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 208


>gi|163858244|ref|YP_001632542.1| two component response regulator [Bordetella petrii DSM 12804]
 gi|163261972|emb|CAP44274.1| two component response regulator [Bordetella petrii]
          Length = 218

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 12/140 (8%)

Query: 99  ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-------EVIIEAHG 151
             SG               I F    G       +   +   +         + +++A  
Sbjct: 74  GESGLAFQEQIAKSGLRMPIVF--MTGHGDIAMTVKAMKAGAVDFLAKPFRDQDMLDAVA 131

Query: 152 ACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 ++ L   +  +   +A  +LT RE   + L   G  +++IA +L +S  TV  +
Sbjct: 132 NALARDSERLAAEQSIAQLRAAHASLTPREREVMALVVSGLLNKQIAFELNVSEVTVKIH 191

Query: 209 LGSATVKLDAVNRIQAIAKA 228
            G    K+ A +    + KA
Sbjct: 192 RGQVMKKMGARSVADLVRKA 211


>gi|85858634|ref|YP_460836.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85721725|gb|ABC76668.1| response regulator with a HTH DNA-binding domain [Syntrophus
           aciditrophicus SB]
          Length = 210

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 160 FLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            LEL    R      L++RE   + +   G T  EIAE+L LSV T++ Y      K++ 
Sbjct: 134 ALELDADIRKPPHEILSDREYQVMLMLASGKTVTEIAEELCLSVKTISTYRSRILEKMNM 193

Query: 219 VNRIQAIAKAIRFGYI 234
               +    A++   +
Sbjct: 194 KKNAELTLYAVQNHLV 209


>gi|119386291|ref|YP_917346.1| response regulator receiver protein [Paracoccus denitrificans
           PD1222]
 gi|119376886|gb|ABL71650.1| response regulator receiver protein [Paracoccus denitrificans
           PD1222]
          Length = 263

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 28/240 (11%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           ++        L  +   I A          +   P            D  +         
Sbjct: 16  ATGTDGYGAALDRLTR-IGADFDMSCIFGFSTSKPPAVIHDGYSETVDRRALRSYLRGAY 74

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV---------RLEGGLLPFAGIAFP 121
              D F           +W+            + +             G L+   G   P
Sbjct: 75  LL-DPFYAASIGATAEGLWRMRDLAPDAYYDAEFAWSQEVHPCISDQAGTLVEEIGYIIP 133

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAAR--- 172
           +  GF     ++                        A  ++  +  +  ++    A    
Sbjct: 134 LSDGFAATYSLMRNRGGTCFDEAEAARLQELLPVIAASLRLHWNVSQNGEQAGGPAPDSE 193

Query: 173 --------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                    LT  + +  +L   G+++  IAE LG++  TV  +  +   +L+  ++ + 
Sbjct: 194 EVLRAAFSALTPAQQAVTKLILRGHSNISIAENLGITEGTVKLHRYNIYKRLEISSQAEL 253


>gi|326801131|ref|YP_004318950.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551895|gb|ADZ80280.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 223

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   L +  +G  +++IAE LG SV T+  +  +   KL   N +  I KA++  
Sbjct: 162 GLSKREKQILGMVINGKHNKDIAEVLGKSVRTIETHRFNIMKKLGVNNAVDMINKAMKEN 221

Query: 233 YI 234
            I
Sbjct: 222 LI 223


>gi|297622465|ref|YP_003703899.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297163645|gb|ADI13356.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 176

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               ++           I    EL  +   S +   LTERE   L L   G ++  I E+
Sbjct: 84  DDDAQLFKALQALRRGEIWASRELLTRTIGSLSTPQLTEREREVLGLLAQGLSNRAIGER 143

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LG+S  TV  ++ +   K     R++  A
Sbjct: 144 LGISERTVKTHVANLFDKFGVRTRLELAA 172


>gi|295083862|emb|CBK65385.1| transcriptional regulator [Bacteroides xylanisolvens XB1A]
          Length = 203

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++       L++RE   +     G T++EIAEKL LS+HTV  +  + + KL   +   
Sbjct: 125 EEEEMDNQDTLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAG 184

Query: 224 AIAKAIRFGYI 234
               AI    +
Sbjct: 185 LTIYAIVNKLV 195


>gi|289641921|ref|ZP_06474076.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289508221|gb|EFD29165.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 371

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 69/261 (26%), Gaps = 51/261 (19%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           S +L++       I          L  +   +  P +   +     +             
Sbjct: 109 SKALED--RVCEEIAANCGFARVLLSRVEDGVWRPWKVNKMIRDEPWFAAWVQREI---- 162

Query: 71  TYGDDFLFH-FNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
              D  L     S   P +        +        +    V          G       
Sbjct: 163 LLDDLVLEAELLSERRPGLVTNTADPRVHPIIRAGEATSYVVAPITPAGRVVGFLHADHG 222

Query: 125 GFH-------KNGYVIFTS------------EFLMLANEVIIEAHGACYQVITDFLELF- 164
                     ++    F+             E L L  + + +        + +  E   
Sbjct: 223 SGGHTCDETDRDVLWAFSEGFGHLYERSVLVERLRLQRDRVRQTLAVVGAALEELTEAEI 282

Query: 165 -------------------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                               +       LT RE   L L   G +++EIAE+L ++V TV
Sbjct: 283 ELVTAPDDDTPVARTASSVFRSEGGLDELTAREREVLALIAGGASNQEIAEQLVITVGTV 342

Query: 206 NAYLGSATVKLDAVNRIQAIA 226
             ++     KL AVNR QAIA
Sbjct: 343 KTHVKHILAKLGAVNRSQAIA 363


>gi|170749447|ref|YP_001755707.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655969|gb|ACB25024.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 222

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KRSSAARNLTE 176
               GY++  S    L   V   A G            +       +      +A  L+ 
Sbjct: 99  AGARGYLLKRSAAEDLLRAVRAVAAGGIYLDPSVASHAMAHPATPTQGGDTEPSAEALSP 158

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RET  L+L   G++++EIA +  LSV ++  Y   A  KL    R + I  A   G++
Sbjct: 159 RETDVLRLIAQGFSNKEIARRFDLSVKSIETYKARAAEKLGLRTRAEIIRYAAAHGWL 216


>gi|94499636|ref|ZP_01306173.1| response regulator GacA [Oceanobacter sp. RED65]
 gi|94428390|gb|EAT13363.1| response regulator GacA [Oceanobacter sp. RED65]
          Length = 215

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +L++RE     +  +    +EI+++L LS  TVN Y      KLD  + ++    AI
Sbjct: 146 PFDSLSDREMQISIMIANCAKVQEISDQLFLSPKTVNTYRYRIFEKLDISSDVELTRLAI 205

Query: 230 RFGYI 234
           RFG +
Sbjct: 206 RFGIV 210


>gi|317405260|gb|EFV85592.1| LuxR family Two component transcriptional regulator [Achromobacter
           xylosoxidans C54]
          Length = 210

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-YQVITDFLELFKKRSSAARN--------L 174
           L     GYV+   + L +   +     G            + + R + ++         L
Sbjct: 90  LRAGATGYVLKERDDLEVLLSLRSVLRGGAPIDPFVARRIIEEMRPAPSQPATADAGETL 149

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + RE   L+L  +G  + EIAE+L LS +TV  ++     KL   +R +AI  A   G +
Sbjct: 150 SPREGQILRLVAEGLGNREIAEQLHLSRYTVECHIKHIYRKLAVSSRTRAIHTARSRGLL 209


>gi|161505683|ref|YP_001572795.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867030|gb|ABX23653.1| hypothetical protein SARI_03859 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 217

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166
           A I   V             G   F S+      E+I   H         +L      K 
Sbjct: 95  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 151

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 152 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 211

Query: 227 K 227
           +
Sbjct: 212 R 212


>gi|118618297|ref|YP_906629.1| putative regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118570407|gb|ABL05158.1| conserved hypothetical regulatory protein [Mycobacterium ulcerans
           Agy99]
          Length = 411

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITD---FLELFKKRSSAARNLTERETSCLQLAGDGY 189
              S           +      + +        L + ++     LT RE   L+L   G 
Sbjct: 303 ALASADEAARALQDADLDLRKIEPVERSPAARSLAEVQTRVMAMLTRREVEVLRLMAAGR 362

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           T+++IA++L +S  TV +++     KL A NR +A +  +R 
Sbjct: 363 TNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVRL 404


>gi|114320166|ref|YP_741849.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226560|gb|ABI56359.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 219

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 17/133 (12%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-----------QVITDFLE 162
           +   V          +           +  E ++                   V+   L 
Sbjct: 85  VVLTVSNAAEDVHAALQAGADGYLLKDMEPEALVAELRRAAGGELVISPELASVLAQVLT 144

Query: 163 LFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                ++      LT RE+  L+    G +++ IA  LGL   TV  ++ S   KL   +
Sbjct: 145 RPNHSAADELLAELTSRESEILRHIAKGQSNKMIARDLGLMEGTVKVHVKSILKKLRMHS 204

Query: 221 RIQAIAKAIRFGY 233
           R++A   A++ G+
Sbjct: 205 RVEAAVWAVQHGF 217


>gi|330465576|ref|YP_004403319.1| two-component system response regulator [Verrucosispora maris
           AB-18-032]
 gi|328808547|gb|AEB42719.1| two-component system response regulator [Verrucosispora maris
           AB-18-032]
          Length = 216

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 29/83 (34%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G     +                LT RE   L     G  + +IA + GLS  T+   + 
Sbjct: 131 GITAAALGRAQPATVSLPPPFDRLTPRERDILAHLAAGEDNAQIARRFGLSTKTIRNQVS 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           +   KL   +R+QA   A   G 
Sbjct: 191 AILGKLGVADRVQAALLARDVGI 213


>gi|319791419|ref|YP_004153059.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593882|gb|ADU34948.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 482

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 21/154 (13%)

Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHK-----NGYVIFTSEFLMLAN------------- 143
                    G   F GI  P      +       +V+  +     A              
Sbjct: 329 ASFVDERLDGSGFFRGIKGPAIDVAGRVLAVAAHWVLLRTSRPGQAALDEADAIAALKRE 388

Query: 144 EVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
             +     A   V+T   +     +    AA  L+ RE   L     G +++E A  LG+
Sbjct: 389 AELGRLDAAAVAVLTGHPQTETAIAPSNEAAALLSSREIEVLGRISLGDSNKEAARVLGI 448

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV A+L +   KL+   R  A  KA+  G +
Sbjct: 449 SPSTVRAHLENIFRKLECTTRAAATLKALTLGLL 482


>gi|56415671|ref|YP_152746.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161616890|ref|YP_001590855.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168233331|ref|ZP_02658389.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235416|ref|ZP_02660474.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168260442|ref|ZP_02682415.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464895|ref|ZP_02698787.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168818365|ref|ZP_02830365.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445001|ref|YP_002043037.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194469310|ref|ZP_03075294.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194738248|ref|YP_002116733.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247639|ref|YP_002148726.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197261647|ref|ZP_03161721.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364598|ref|YP_002144235.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243718|ref|YP_002217738.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|204928562|ref|ZP_03219761.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354622|ref|YP_002228423.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859015|ref|YP_002245666.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238910166|ref|ZP_04654003.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|56129928|gb|AAV79434.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161366254|gb|ABX70022.1| hypothetical protein SPAB_04711 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403664|gb|ACF63886.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194455674|gb|EDX44513.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713750|gb|ACF92971.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632211|gb|EDX50695.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096075|emb|CAR61670.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197211342|gb|ACH48739.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197239902|gb|EDY22522.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291518|gb|EDY30870.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938234|gb|ACH75567.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204321995|gb|EDZ07193.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274403|emb|CAR39430.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205332558|gb|EDZ19322.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205344468|gb|EDZ31232.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350531|gb|EDZ37162.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710818|emb|CAR35182.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|320088212|emb|CBY97974.1| Response regulator gacA Global activator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322612954|gb|EFY09906.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619019|gb|EFY15906.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625204|gb|EFY22031.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322630128|gb|EFY26901.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634320|gb|EFY31055.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635779|gb|EFY32488.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642941|gb|EFY39520.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644989|gb|EFY41520.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650087|gb|EFY46502.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656800|gb|EFY53087.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661064|gb|EFY57292.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662448|gb|EFY58661.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667326|gb|EFY63492.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674297|gb|EFY70390.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678495|gb|EFY74556.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681001|gb|EFY77035.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687063|gb|EFY83036.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323193215|gb|EFZ78433.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198296|gb|EFZ83402.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200914|gb|EFZ85984.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206668|gb|EFZ91626.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213989|gb|EFZ98755.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216292|gb|EGA01020.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220514|gb|EGA04968.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225379|gb|EGA09613.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228493|gb|EGA12624.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234314|gb|EGA18402.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238626|gb|EGA22682.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244818|gb|EGA28822.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323245807|gb|EGA29797.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251010|gb|EGA34886.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257242|gb|EGA40941.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262166|gb|EGA45727.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264623|gb|EGA48127.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268912|gb|EGA52370.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625526|gb|EGE31871.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629758|gb|EGE36101.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 196

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166
           A I   V             G   F S+      E+I   H         +L      K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|15894152|ref|NP_347501.1| two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|15023760|gb|AAK78841.1|AE007602_2 Two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|325508280|gb|ADZ19916.1| Two-component response regulator [Clostridium acetobutylicum EA
           2018]
          Length = 218

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+++E + ++    G +++EIAEKL LS  T+   +     KL+  +R Q    A +   
Sbjct: 157 LSDKEINIVREIASGLSNKEIAEKLFLSEGTIKNNISIIFSKLNLRDRTQVTIFAFKNNI 216

Query: 234 I 234
           +
Sbjct: 217 V 217


>gi|313108775|ref|ZP_07794763.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310881265|gb|EFQ39859.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 740

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193
              L     +       ++     +LF             L+ RE + L L   G +++E
Sbjct: 639 RSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQE 698

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I E+L +S+HTV  +      KL    R QA+A+A   G +
Sbjct: 699 IGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGLL 739


>gi|260773658|ref|ZP_05882574.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP
           69.14]
 gi|260612797|gb|EEX38000.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP
           69.14]
          Length = 216

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 38/79 (48%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H +   +        ++ + A  +LT RE   L+      ++++IA+ L +S  TV ++L
Sbjct: 132 HVSNQLLHHFRYAFHEQHTKATLDLTVREIQILRCLQAQASNDDIAKNLFISELTVKSHL 191

Query: 210 GSATVKLDAVNRIQAIAKA 228
                KL   NR QAI+ A
Sbjct: 192 YQIYKKLAVKNRAQAISWA 210


>gi|269126099|ref|YP_003299469.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311057|gb|ACY97431.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 222

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 32/74 (43%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L     R      L+ RE   L L  +G +   IA+ + LS  T   Y      KL A N
Sbjct: 131 LAQALARRRTGELLSPRERQVLALLMEGRSIAAIADSMHLSHSTAKTYAARLYEKLGAAN 190

Query: 221 RIQAIAKAIRFGYI 234
           R QA+  A+R G I
Sbjct: 191 RTQAVMTALRLGLI 204


>gi|221639744|ref|YP_002526006.1| response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|221160525|gb|ACM01505.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
          Length = 214

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            +   + I     +   +     +  + + +   +LTER+ +       G +++ IA +L
Sbjct: 113 RLATFDGIFLPTASLTALRGALPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGEL 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L   TV  ++ +   KL A NR +A  K
Sbjct: 173 NLCESTVKVHIRNIMKKLGAKNRTEAAFK 201


>gi|119774583|ref|YP_927323.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767083|gb|ABL99653.1| transcriptional regulator, LuxR family [Shewanella amazonensis
           SB2B]
          Length = 210

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +     +  LT RE   LQ    G T+ +IA +L +S  T+  +L  A  K+   +R QA
Sbjct: 138 EDYEEDSEKLTIREREVLQALLSGSTNLDIANRLFVSESTIKTHLYRAFRKIGVSSRGQA 197

Query: 225 IAKA 228
           IA A
Sbjct: 198 IAWA 201


>gi|327480883|gb|AEA84193.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 219

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAE 196
               +V+         + TD       RS     L   T RE     +   G  + EIAE
Sbjct: 112 EAVRKVLAGQTFIEQPLATDLACQRPSRSPVKGRLADMTPREMEIFIMLARGIGNREIAE 171

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L +S  TV+ +L     KL+  ++ + +  AI  G +
Sbjct: 172 RLCISSKTVSNHLALLKSKLEVSSQAELVHLAIDQGLL 209


>gi|304411116|ref|ZP_07392732.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|307301761|ref|ZP_07581519.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
 gi|304350651|gb|EFM15053.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|306913799|gb|EFN44220.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
          Length = 221

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 108 LEGGLLPFAGIAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
               L   + +   +R      +   ++ T    M+A E+  +             +L  
Sbjct: 82  ERDSLDQESAMLLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDG 141

Query: 166 KRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                + +      LT RE + +Q    G  ++EIA +L +S HTV A++ S   K  + 
Sbjct: 142 NNEMPSDSVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSR 201

Query: 220 NRIQAIAKA 228
           NR++ +  A
Sbjct: 202 NRVELLRWA 210


>gi|239940650|ref|ZP_04692587.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291444087|ref|ZP_06583477.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347034|gb|EFE73938.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 224

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L     G+ ++ IAE+L +S  TV  ++  A  KL A +R Q +  
Sbjct: 153 AERLAALTGREREVLVQVAGGHPNDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 212

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 213 AYESGLV 219


>gi|124022984|ref|YP_001017291.1| hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT
           9303]
 gi|123963270|gb|ABM78026.1| Hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT
           9303]
          Length = 233

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LT 175
           +  G     +V           + ++           D  EL +              LT
Sbjct: 114 LDAGADGVIFVSSVGSGNGDFIQSLLTTLKGGIYYPADVRELARDTKQPNDAPVIDCQLT 173

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ERE   L     G +++EI+E L +S  TV + + +   KL    R QA   AIR   +
Sbjct: 174 ERELEVLNAIVGGLSNKEISESLFVSSETVKSNVSTIISKLGVRVRTQAAVFAIRHRIV 232


>gi|113869645|ref|YP_728134.1| response regulator [Ralstonia eutropha H16]
 gi|113528421|emb|CAJ94766.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 224

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR G          ++ LM A + ++         I   +      +     LT RE   
Sbjct: 108 VRAGARGYVLKDAPADELMAAIQSVLAGRVFYSARIARGMAEQSPAAGPLDALTPRERDI 167

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           L+  G G  ++EIA +LG+SV TV  +  +   KL    R   +  A+ 
Sbjct: 168 LRGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVE 216


>gi|62182280|ref|YP_218697.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224585585|ref|YP_002639384.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62129913|gb|AAX67616.1| response regulator (repressor) in two-component regulatory system
           wtih UhpB, regulates uhpT operon (LuxR/UhpA family)
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224470113|gb|ACN47943.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322716771|gb|EFZ08342.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 217

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166
           A I   V             G   F S+      E+I   H         +L      K 
Sbjct: 95  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 151

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT+RE    +    G   +EIA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 152 AAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAH 211

Query: 227 K 227
           +
Sbjct: 212 R 212


>gi|46581079|ref|YP_011887.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450500|gb|AAS97147.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 227

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +R+     LT RE   L    +G+ + EIA+ L +S  TV  +  +   KL   + 
Sbjct: 144 ALEDRRTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSA 203

Query: 222 IQAIAKAIRFGY 233
            +  A A R G 
Sbjct: 204 AEVRAFAQRQGL 215


>gi|328885230|emb|CCA58469.1| hypothetical protein SVEN_5183 [Streptomyces venezuelae ATCC 10712]
          Length = 1016

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 61/223 (27%), Gaps = 17/223 (7%)

Query: 20   RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
             L  +     +R         A      ++ +  L                    + L  
Sbjct: 799  VLTAVTAEADSRGLPAADEGRAEALDVVRRCVRGLAVQAPVWEAY-----SLQVSEELAR 853

Query: 80   FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF- 138
                     W  +      E   +              +   V  G  +    +      
Sbjct: 854  AEGRDTAARWAEVVAA--YEPVERPYQLARARHRLADALL--VEGGRREEATALLREAHA 909

Query: 139  -------LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
                     L  +V + A  A   +  +      +       LT RE + L L   G T+
Sbjct: 910  TAVRLGARPLREDVELLAARARLSLAAEKPPAAAEPGDDTFGLTPREQAVLGLVAAGRTN 969

Query: 192  EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +IAE+L +S  T + ++ +   KL    R +A A A R   +
Sbjct: 970  RQIAEELFISPKTASVHVSNILAKLGVSGRGEAAALAHRLHLL 1012


>gi|170728214|ref|YP_001762240.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813561|gb|ACA88145.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 221

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 143 NEVIIEAHGACYQVITDF---LELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIA 195
            + +        ++       LE     S  A      LT+RE + +QL   G  + EIA
Sbjct: 118 ADELWYDRTLISKMFRQLVDRLETSDDYSQDAEEILQVLTKRERTIIQLVSSGARNREIA 177

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           + L +S HTV A++ S   K  + NR++ +  A  +G
Sbjct: 178 DNLCISEHTVKAHISSIFRKTHSRNRVELLRWAQTYG 214


>gi|331697666|ref|YP_004333905.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952355|gb|AEA26052.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 220

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                  L         +L+ +E   L L   G T+ +I  +L L+  TV  Y+ S   K
Sbjct: 132 AARALERLRTPEDPRYESLSPQERRILDLIATGLTNRQIGAELFLAEKTVKNYVSSLLHK 191

Query: 216 LDAVNRIQAIAKA 228
           L    R +A   A
Sbjct: 192 LGFARRTEAAVYA 204


>gi|237808102|ref|YP_002892542.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
 gi|237500363|gb|ACQ92956.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
          Length = 301

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 62/232 (26%), Gaps = 31/232 (13%)

Query: 19  PRLHLIQNRIKARNFA--LYTINSALDFPRRQQLICEL-HNYDLDSGDIPNILIETYGDD 75
             +  I + ++  ++   L++ +        Q        +   D             D 
Sbjct: 29  SLIKTISDYVEFDSWVALLFSADQTPVVLAEQPTNDGSEDSLFQDYL-----NGLYLLDP 83

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF--PVRLGFHKNGYVI 133
           F     S +   + +                R     +    I F  P+      +  + 
Sbjct: 84  FYIAARSSITSGLVRLDDVAPDRFLFTDYYQRYFRLNIVEDEIQFNQPIDANRTLSLSLG 143

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---------------------AAR 172
               F       +         ++       +                            
Sbjct: 144 AAHRFTPEEIAKLAMIQQWVIALMRQRYNYEQLSLPVQTIAETHNWQADLDMSINNTRGI 203

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +LT RE    +L   GY+S+ IA+KL +SV TV A+      KL   ++ Q 
Sbjct: 204 SLTLREMDVSRLMLGGYSSKGIAQKLAISVETVKAHKKHIYSKLGINSQSQL 255


>gi|222082450|ref|YP_002541815.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727129|gb|ACM30218.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 214

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                +    +       + A     LT+RE+  LQL   G ++++I  KL L   TV  
Sbjct: 126 YVAPTLSARLISGQGAAPAKADLIRELTDRESEVLQLVATGLSNKQIGLKLDLHEKTVKH 185

Query: 208 YLGSATVKLDAVNRIQAI 225
           ++     KL   NR +A 
Sbjct: 186 HMTQIFTKLGVANRTEAA 203


>gi|163842188|ref|YP_001626593.1| two component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162955664|gb|ABY25179.1| two component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 225

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LT 175
           +    L      Y+   +    +   +   A G     +     L      +  +   LT
Sbjct: 107 SISAALAAGARSYLTKDAGRDRILAAIRSTASGQATFDVAVARRLISGLKPSKPSFPELT 166

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           ERE+  L L   G  ++EIA++  +SV TV  ++ +   KL   +R QAI
Sbjct: 167 ERESEILALIAAGRNNQEIAQESFVSVATVKTHINNIFAKLQLRDRAQAI 216


>gi|163749108|ref|ZP_02156358.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
 gi|161331178|gb|EDQ02067.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
          Length = 221

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKR-------SSAARNLTERETSCLQLAGDGYTSEEIA 195
            + +        ++    +    +        ++  + LT+RE + +Q+   G  ++EIA
Sbjct: 118 ADELWYDRALISKMFRQLVSRLDRTKDYSQDNAAMLQMLTKRERTIIQIVSSGARNKEIA 177

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +L +S HTV A++ S   K  + NR++ +  A
Sbjct: 178 HRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|157961641|ref|YP_001501675.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157846641|gb|ABV87140.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC
           700345]
          Length = 211

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             LT RE   LQ+  +G T+ +IA +L +S  T+  +L  A  K+   +R QAIA A
Sbjct: 146 DTLTIREREVLQVLRNGSTNIDIANRLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202


>gi|91975316|ref|YP_567975.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681772|gb|ABE38074.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 224

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|126457205|ref|YP_001075234.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167827727|ref|ZP_02459198.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|242313202|ref|ZP_04812219.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
 gi|126230973|gb|ABN94386.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106a]
 gi|242136441|gb|EES22844.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
          Length = 235

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 7   LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 58

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 59  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 115

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 + +     +          +   L   +  +R + 
Sbjct: 116 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 175

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 176 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 230


>gi|332668102|ref|YP_004450890.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336916|gb|AEE54017.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 204

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
               L + + I  +            L K        LTE+E   LQ    G T++++AE
Sbjct: 108 TERDLYSSIEIALYNFAQNAQPRNFNLEKLNQQLLSPLTEKEFQVLQDIYQGCTNKQMAE 167

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +  +SV+T+  +L +   KL+  +R +AI K    
Sbjct: 168 QHFVSVNTIKTHLQNLYDKLNVCSRSEAIVKLREM 202


>gi|322386644|ref|ZP_08060269.1| two component system response regulator [Streptococcus cristatus
           ATCC 51100]
 gi|321269317|gb|EFX52252.1| two component system response regulator [Streptococcus cristatus
           ATCC 51100]
          Length = 227

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +++  E   +Q  G G +++EIA KL LS  TV  YL     KL+  +R Q    A++ 
Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEIAAKLYLSEGTVRNYLSGILSKLNLRDRTQLAIWAVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|307330982|ref|ZP_07610113.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883368|gb|EFN14423.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 300

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +ERE   L L   G  + E A+ LGLS  T   ++     KL A +R Q +  A   G +
Sbjct: 236 SERERQVLALVARGLNNAEAAQTLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 295


>gi|303237703|ref|ZP_07324263.1| hemerythrin HHE cation binding domain protein [Prevotella disiens
           FB035-09AN]
 gi|302482155|gb|EFL45190.1| hemerythrin HHE cation binding domain protein [Prevotella disiens
           FB035-09AN]
          Length = 313

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           ++S     L++RE   +     G T++EIA  L +S +TV  +  +   KL   +     
Sbjct: 238 RKSDTGDTLSDREKDVIISVVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLT 297

Query: 226 AKAIRFGYI 234
             AI    +
Sbjct: 298 IYAIVNNLV 306


>gi|288555019|ref|YP_003426954.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546179|gb|ADC50062.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 199

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               +GY++  S    LA+ + I   G       + ++L     +    LT RE   ++L
Sbjct: 93  NAEVSGYLLKDSPSEELASSIRIIMDGRRIYA-PELIDLAYDNKNP---LTNREKQVMEL 148

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             +G ++ EIA +L L+  TV  Y+     KLD  NRI+AI++    G+
Sbjct: 149 IAEGKSTNEIASELYLTNGTVRNYISVILDKLDVGNRIEAISRFKEKGW 197


>gi|228908960|ref|ZP_04072790.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200]
 gi|228850682|gb|EEM95506.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200]
          Length = 451

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 150 HGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            G  +++   F E  +  +  + A  LT RE   LQL   G     IA +L LS  TV  
Sbjct: 364 QGMSHKIFEKFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRN 423

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y  +A  KL   N+ +A+ KA+  G I
Sbjct: 424 YASTAYTKLGVCNKEEAVQKALEIGII 450


>gi|157377077|ref|YP_001475677.1| LuxR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319451|gb|ABV38549.1| transcriptional regulator, LuxR family [Shewanella sediminis
           HAW-EB3]
          Length = 221

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 42/87 (48%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
              +I +      + +    +  ++  +    LT+RE + +QL   G  ++EIA  L +S
Sbjct: 124 DRTLISKMFRHLVKRLDSANDYSQETVAMLEMLTKRERTIIQLVSSGARNKEIAHNLCIS 183

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            HTV A++ S   K  + NR++ +  A
Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|53721891|ref|YP_110876.1| GerE family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52212305|emb|CAH38329.1| GerE family regulatory protein [Burkholderia pseudomallei K96243]
          Length = 235

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 7   LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 58

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 59  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 115

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 +       +          +   L   +  +R + 
Sbjct: 116 VEVLLRDGGAVLAAFSLLRLACDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 175

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 176 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 230


>gi|326792258|ref|YP_004310079.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM
           5427]
 gi|326543022|gb|ADZ84881.1| two component transcriptional regulator, LuxR family [Clostridium
           lentocellum DSM 5427]
          Length = 207

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAKAIR 230
            +LTERE        +G +++EI +KL +S  TV  ++     K    +R Q A+    R
Sbjct: 148 DSLTEREVEVAAAIAEGLSNKEIGKKLFISDGTVRNHISVILSKTGLEHRTQIAVRYLTR 207


>gi|290958801|ref|YP_003489983.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260648327|emb|CBG71438.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 220

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLA 185
             G  +        +    + A     +++  F ++   R        +T RE   L   
Sbjct: 108 DTGPDLLAQAVRSASEGEALIAPSVTVRLLQAFADVPAGRPVAQPVSPVTAREEQVLLSV 167

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             G T+ EIA+ L +S+ TV  +L S   KL A NR++    A  
Sbjct: 168 ARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYE 212


>gi|302879092|ref|YP_003847656.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581881|gb|ADL55892.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 491

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +    A  L+ R    + L   G TS +IA +L +S  TV  +  +   KL   +  +  
Sbjct: 421 RSEEGAGKLSRRHLDVIGLIAAGLTSAQIAARLNISQTTVITHRRNLMRKLGLHSAAELT 480

Query: 226 AKAIRFGYI 234
           A AI+   +
Sbjct: 481 AYAIKNKIV 489


>gi|171058058|ref|YP_001790407.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775503|gb|ACB33642.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6]
          Length = 267

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 68/244 (27%), Gaps = 24/244 (9%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           ++ L+  L    N     +F  +T          + LIC L      +    +       
Sbjct: 23  IEALALNLDASLNVHTRSHFFTWTQGLLQGLIHHEALICVL-RCPESATWRVDSFSTRVA 81

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP------------ 121
           D  +F         +   + +         + +      +  +G                
Sbjct: 82  DSTVFAAPLLRDIALVPRLVDAWKGAHHLPIVLPARRDGVLGSGAWVAELERIAATRLAV 141

Query: 122 --VRLGFHKN-GYVIFTSEFLMLANEVIIEAHGACYQVITDFLE------LFKKRSSAA- 171
                         +   +        +         +   ++             +   
Sbjct: 142 HGCHDIDGDANCLFLLACQGDSPDPRELCLLRLVVPFLREAWVRSQMIGGRHDDLPAPHG 201

Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              +T RE   L+    G ++ EI + LG+S  TV  ++     KL+ VNR QA+ +AI 
Sbjct: 202 HAVITVREQEILKWIYLGKSNSEIGQILGISALTVKNHVQKMLHKLNVVNRAQAVGRAIE 261

Query: 231 FGYI 234
              I
Sbjct: 262 AHLI 265


>gi|160889954|ref|ZP_02070957.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492]
 gi|270294634|ref|ZP_06200836.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481391|ref|ZP_07940459.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|156860342|gb|EDO53773.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492]
 gi|270276101|gb|EFA21961.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902487|gb|EFV24373.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 203

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++A  +L+ RE   L L   G  ++EIA+KL +S+ TV ++  + T KL   +       
Sbjct: 132 TAAGHDLSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIY 191

Query: 228 AIRFGYI 234
           A+  GY+
Sbjct: 192 AVMHGYV 198


>gi|225155470|ref|ZP_03723961.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224803771|gb|EEG22003.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 225

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                    LE    R+  +++LT RE   LQL  +G  ++++A +LG+S+ TV  +   
Sbjct: 134 RLQDAARRSLETGTPRAKPSQSLTTREAEVLQLVAEGAANKQVAAELGISIKTVEKHRQQ 193

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLD  +       AI  G I
Sbjct: 194 LMNKLDIHDTAGLTRHAIATGVI 216


>gi|21224676|ref|NP_630455.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3367769|emb|CAA20094.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 222

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           + + ++               V                +LT+RE   L   G G+T+ EI
Sbjct: 120 SGDAVIAPALTRRLLDEFAQYV--PAHRGDAAGDPRLVSLTDREREILVAVGKGWTNGEI 177

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +  LS  TV  ++G    K+ A +RIQA+  A   G 
Sbjct: 178 AARFVLSESTVKTHVGRVLAKIGARDRIQAVIFAYDHGL 216


>gi|326388485|ref|ZP_08210080.1| response regulator receiver domain protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207033|gb|EGD57855.1| response regulator receiver domain protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 209

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TE 176
            P+ +   K G V F ++      + ++EA                        L   T 
Sbjct: 94  IPMTVKAMKAGAVDFLTK--PFREQDLLEAVHIALDRARRLHAQQHDLQRTRDKLSLLTP 151

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           RE   +     G  +++IA +LGLS  TV  +  S   KL      + +  
Sbjct: 152 REKEVMSGVARGLLNKQIAGELGLSEITVKLHRSSLMKKLGIRGVAELVRM 202


>gi|325570549|ref|ZP_08146275.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156395|gb|EGC68575.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus
           ATCC 12755]
          Length = 202

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+E E   L+L     T+E+IA+KL +S  TV  ++ S   KL+   RI A+ + I+   
Sbjct: 141 LSEIERQVLELISQEQTNEKIAKKLFISRRTVENHVSSICNKLNVQTRIGAVREGIKLNL 200

Query: 234 I 234
           I
Sbjct: 201 I 201


>gi|317505003|ref|ZP_07962951.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315663885|gb|EFV03604.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 318

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G +++EIAE L +SV+TV  +  +   KL   +       AI  
Sbjct: 249 DQLSQREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             +
Sbjct: 309 HLV 311


>gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 203

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT  E   ++L   G  + EI++ + +S  T+ +++ +   K    NR Q    A+ 
Sbjct: 142 ELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALE 199


>gi|239996407|ref|ZP_04716931.1| two component LuxR family transcriptional regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 219

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               R+LT +E + L+    G  ++ IA +L +S  TV +++ S   KL A NR++ +A 
Sbjct: 148 PEQIRSLTRKELTVLKYLTQGLANKVIAYELNISETTVKSHVSSILKKLGASNRVKVVAS 207

Query: 228 A 228
           A
Sbjct: 208 A 208


>gi|210050464|dbj|BAG80716.1| transcriptional regulator [Rhodococcus sp. YK2]
 gi|210050474|dbj|BAG80725.1| transcriptional regulator [Terrabacter sp. YK3]
          Length = 402

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R + A +L+ RE+  L+L   G T+  IA +L ++  TV +++     KL A NR +A+A
Sbjct: 339 RFAPASSLSTRESEVLRLMAAGETNSAIAARLFVTDETVKSHVKQILRKLHARNRAEAVA 398

Query: 227 K 227
           K
Sbjct: 399 K 399


>gi|152964708|ref|YP_001360492.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359225|gb|ABS02228.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 204

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 2/108 (1%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              GY++       LA  V+        +            +  A  LTERE   L    
Sbjct: 98  GARGYLVKDVSREELATAVLQALQDVSRR--RGGNRTRAVLTGRAPVLTEREQQVLVGMS 155

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G ++ EI  +L LS  TV  +      KL+A +R QA+A   R+G +
Sbjct: 156 RGRSNAEIGRELFLSEDTVKTHARRLFRKLEAADRAQAVAVGFRWGLV 203


>gi|150004589|ref|YP_001299333.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254883067|ref|ZP_05255777.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294776747|ref|ZP_06742211.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319643586|ref|ZP_07998206.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|149933013|gb|ABR39711.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254835860|gb|EET16169.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294449402|gb|EFG17938.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317384755|gb|EFV65714.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 214

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              +   +++    H A  Q     + + K        L+ RE   L L   G  ++EIA
Sbjct: 115 GSLIKDIHQLRQYGHQARKQAADKAMHIEK----TEHELSVREIEVLILITKGLINKEIA 170

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +KL +S+ TV ++  + T KL   +       A+  GYI
Sbjct: 171 DKLNISLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 209


>gi|326331580|ref|ZP_08197870.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
 gi|325950836|gb|EGD42886.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
          Length = 297

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 41/93 (44%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
             +V         ++     E    +   A  L  RE   L+    G ++ E AE LG+ 
Sbjct: 204 DPDVRSRLEAMVLRLTAAPGEKRPAQLVPAVRLAAREIDVLRQVALGNSNREAAEALGIV 263

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV +YL SAT KL+A NR+ A+  A   G I
Sbjct: 264 ESTVKSYLKSATRKLNANNRVHAVRMAREAGLI 296


>gi|319795895|ref|YP_004157535.1| ATP-dependent transcriptional regulator malt-like, luxr family
           [Variovorax paradoxus EPS]
 gi|315598358|gb|ADU39424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Variovorax paradoxus EPS]
          Length = 914

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 69/220 (31%), Gaps = 10/220 (4%)

Query: 25  QNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-DDFLFHFNSG 83
           + R+ A +     +  A            L   D +                 +    + 
Sbjct: 694 RQRLPAHDLDYLALAKARWEIAFGDARAALTVLDAEMHAAIASNRYRRVLKLRVLRAMAL 753

Query: 84  LLPIIWQSIQEETVI---ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
                  +  +E       +S +  +RL     P  G+                +S    
Sbjct: 754 QRAGDVAAAIDEVSAVLQTASQEGFMRLILDEGPAVGMLVQRYANAAAQEAAASSSASTR 813

Query: 141 LANEVIIEAHGACYQV------ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
               +          +        +         S    LT +E   LQL  +GY++  +
Sbjct: 814 GDPILADYLQRLLQAMGPMAAVDAEAAAPGAAGDSIKEPLTRKEIRVLQLLAEGYSNNAM 873

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AEKL +S  TV  +L +  +KLDA +R QA+A A + G I
Sbjct: 874 AEKLFVSDSTVRTHLRNINMKLDAKSRTQAVAIARKVGVI 913


>gi|163803952|ref|ZP_02197780.1| transcriptional regulator, LuxR family protein [Vibrio sp. AND4]
 gi|159172239|gb|EDP57142.1| transcriptional regulator, LuxR family protein [Vibrio sp. AND4]
          Length = 208

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +  DG  +++IA +L +S  T+ A++ +   KLD  NR  A+  
Sbjct: 146 ALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTHAVIL 200


>gi|53717201|ref|YP_105982.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|126445982|ref|YP_001078134.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|134278922|ref|ZP_01765635.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|251768304|ref|ZP_02270233.2| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
 gi|52423171|gb|AAU46741.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           23344]
 gi|126238836|gb|ABO01948.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10247]
 gi|134249341|gb|EBA49422.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|243060231|gb|EES42417.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
          Length = 235

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 7   LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 58

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 59  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 115

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 +       +          +   L   +  +R + 
Sbjct: 116 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 175

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 176 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 230


>gi|315650698|ref|ZP_07903754.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315487075|gb|EFU77401.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 217

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           T+ E + ++    G +++EIA+ L  S  TV  YL +   KL+  +R Q    AI  G
Sbjct: 158 TKNEWTIIREVSKGKSNKEIAKDLSFSEGTVRNYLSNILDKLELRDRTQLAIWAIGRG 215


>gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT  E   ++L   G  + EI++ + +S  T+ +++ +   K    NR Q    A+ 
Sbjct: 155 ELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALE 212


>gi|271500030|ref|YP_003333055.1| LuxR family two component transcriptional regulator [Dickeya
           dadantii Ech586]
 gi|270343585|gb|ACZ76350.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech586]
          Length = 218

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+++L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQTETPLECLSERELQIMIMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 INGDVELTHLAIRHGL 208


>gi|239930359|ref|ZP_04687312.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438712|ref|ZP_06578102.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341607|gb|EFE68563.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 104 LSVRLEGGLLPFAGIAFP----VRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVI 157
             +         AG +      VR     +G     +   ++A  +        A +  +
Sbjct: 84  FDLDEYAYAGLRAGASGFLVKDVRPEELLSGIRAVATGDAVVAPSLTRRLLDAYAHHLPV 143

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            D  E           LTERE   L + G G+T+ EIA +  L+  TV  ++G    K  
Sbjct: 144 GDTEEKPTSDDPRLSALTEREREILTVIGKGWTNTEIATRFHLAESTVKTHVGRILAKTG 203

Query: 218 AVNRIQAIAKAIRFGYI 234
           + +RIQA+  A     +
Sbjct: 204 SRDRIQAVILAYDAKLV 220


>gi|229197293|ref|ZP_04324023.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228586170|gb|EEK44258.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 187

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ 
Sbjct: 115 PTETIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVT 174

Query: 227 KAIRFGYI 234
           K I+ GYI
Sbjct: 175 KGIKLGYI 182


>gi|297563666|ref|YP_003682640.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848114|gb|ADH70134.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            + + L   +        LT +E   L L G+G T+ +I E+L L+  TV  Y+ +   K
Sbjct: 143 AMLERLRGAQAEPDPLAELTPQERQILDLIGEGMTNRQIGERLYLAEKTVKNYVSALLSK 202

Query: 216 LDAVNRIQAIAKAIRF 231
           LD   R QA       
Sbjct: 203 LDLKRRTQAAVLVAEL 218


>gi|254510855|ref|ZP_05122922.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534566|gb|EEE37554.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacteraceae bacterium KLH11]
          Length = 250

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 62/225 (27%), Gaps = 9/225 (4%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ-LICELHNYDLDSGDIPNILIET 71
           +L+EL         +                           L N+  D  D        
Sbjct: 15  TLEELWDAHCRQMAKFGFDRLLYGYTQYRTATSLGDPEDFVILSNHCKDYLDGFLRSGLY 74

Query: 72  YGDDFLFHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           +    L           W  I +     V+    +             G          +
Sbjct: 75  FHAPMLKWALDNEGAASWSMIHDMMSSGVMSPEERKVYEFNKSFDTTVGYTVSFTSVSMR 134

Query: 129 N--GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQ 183
                 +            + + HG    ++ +   L           R LT+R+   LQ
Sbjct: 135 TKGAISLAARNSSQKEVNGVWDKHGDDILLMNNVAHLKILTLPYHAPNRALTKRQREALQ 194

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             GDG T+++IA  +GL+  TV  +L  A   L      QA+ KA
Sbjct: 195 WVGDGKTTQDIALLMGLTAATVEKHLRLAREALSVETTAQAVLKA 239


>gi|153011292|ref|YP_001372506.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563180|gb|ABS16677.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 251

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI--- 225
            A    T RE   L     G++++ IAEKL LS +TV  +L     KL   NR + +   
Sbjct: 180 PAITGFTPREVDVLTELQRGHSNKVIAEKLNLSGNTVKMHLQHIMRKLHVQNRTEVVLLL 239

Query: 226 -AKAIRFG 232
            AKA   G
Sbjct: 240 GAKATANG 247


>gi|90417979|ref|ZP_01225891.1| possible response regulator in two-component regulatory system
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337651|gb|EAS51302.1| possible response regulator in two-component regulatory system
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 221

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +VI       ++ +     L+ RE   + L   G T++ IA  L +   TV  Y+ 
Sbjct: 129 RLATKVIRALHHPVQQTAGEMPVLSIREEQVVALLMKGCTNKNIAAALNIREKTVKHYMT 188

Query: 211 SATVKLDAVNRIQAIAKA----IRFGY 233
               KLD  NR++ +  A     R G 
Sbjct: 189 MIMQKLDVSNRLEVVVAAHGYSHREGL 215


>gi|15807682|ref|NP_285334.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460582|gb|AAF12288.1|AE001862_114 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 211

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 5/147 (3%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148
             E    S   L+ R+         +              +             +  + +
Sbjct: 65  DIEMPRLSGLDLAERVRQEAPQTRVVIVTTFTRAGYLRRALDAGARGYLLKDAPSHELAD 124

Query: 149 AHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           A    +         L ++   A   LTERE   L+ A  G ++  IA +LG+ V TV  
Sbjct: 125 AIRRVHAGGRAIDAGLAEEIWDAQSPLTEREIQVLRAAETGRSTAAIAAELGIGVGTVRN 184

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           YL  A  KL A NR +A  KA   G++
Sbjct: 185 YLSEAIGKLGAENRAEAARKARERGWL 211


>gi|300703751|ref|YP_003745353.1| transcriptional regulator protein, luxr family [Ralstonia
           solanacearum CFBP2957]
 gi|299071414|emb|CBJ42733.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 252

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 11/201 (5%)

Query: 36  YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95
              +  +             ++ ++       +        +  + +   P+ + +    
Sbjct: 40  VCSHGRITAAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYFDAAAPA 99

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG----YVIFTSEFLMLANEVIIEAHG 151
             I+      +           +A  V    H  G    +    S  +     V+ +   
Sbjct: 100 AEIDRG---WLAKFIAHDLRNAVADGVYDEGHCIGTYFSFHRLASVNVPDLASVLRDLTP 156

Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
             ++ +   +   +K   +A      L+ERE       G G ++ EIA    +S +TV  
Sbjct: 157 VLHRTLMRAVADTEKTWHSALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQ 216

Query: 208 YLGSATVKLDAVNRIQAIAKA 228
           +L     K    NR+     A
Sbjct: 217 HLKHIMDKTGCANRVGVAVLA 237


>gi|270159193|ref|ZP_06187849.1| Legionella transmission activator LetA [Legionella longbeachae
           D-4968]
 gi|289165979|ref|YP_003456117.1| Legionella transmission activator LetA [Legionella longbeachae
           NSW150]
 gi|269987532|gb|EEZ93787.1| Legionella transmission activator LetA [Legionella longbeachae
           D-4968]
 gi|288859152|emb|CBJ13081.1| Legionella transmission activator LetA [Legionella longbeachae
           NSW150]
          Length = 219

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L + + S    L+ERE   + +   G   +EI+++L LS  T+N Y      KL 
Sbjct: 133 MAINSLEEAQGSPFNILSEREMQVMLMITSGMNVQEISDRLFLSTKTINGYRYRTFEKLG 192

Query: 218 AVNRIQAIAKAIRFGYI 234
             N ++    A++ G I
Sbjct: 193 IKNDVELTYLALKHGII 209


>gi|226364396|ref|YP_002782178.1| serine/threonine protein kinase [Rhodococcus opacus B4]
 gi|226242885|dbj|BAH53233.1| putative serine/threonine protein kinase [Rhodococcus opacus B4]
          Length = 1097

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 135  TSEFLMLANE-VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
               F   + E   +    A    + + L    +R   A  LT+RE     L   G T++ 
Sbjct: 994  ARAFETASREGEALGFAAAASYALGESLPAAPRRGDPAAALTKRERQVAGLVAQGLTNKA 1053

Query: 194  IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            IA +L +S  T   ++     KL   +R Q  A   R 
Sbjct: 1054 IAARLVISQRTAQGHVEHVLAKLGFSSRAQIAAWVARQ 1091


>gi|90020641|ref|YP_526468.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89950241|gb|ABD80256.1| regulatory protein, LuxR [Saccharophagus degradans 2-40]
          Length = 221

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +  +        K +     LT RE   L+L  DG T+ +I+  L +S HTV ++L 
Sbjct: 135 RLLHHFLDKNRRAPSKVAHPDVKLTRRERQILKLIKDGATNADISTALKVSEHTVKSHLY 194

Query: 211 SATVKLDAVNRIQA 224
           +   K+   NR++A
Sbjct: 195 NVYKKIGVRNRLEA 208


>gi|56418740|ref|YP_146058.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56378582|dbj|BAD74490.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 221

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           TERE   + L   G +++EIA++L LS  TV  Y+ S   K    +R Q    
Sbjct: 162 TERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214


>gi|88854587|ref|ZP_01129254.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88816395|gb|EAR26250.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 538

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     L+ RE   L+L   G ++ EIA  L LS HTV+ ++ +   KLD  +R  A + 
Sbjct: 472 APPEGQLSARELEVLRLVSQGLSNPEIAASLVLSEHTVHRHVANILTKLDQTSRTGAASY 531

Query: 228 AIRFGYI 234
           AI+ G +
Sbjct: 532 AIQAGLL 538


>gi|332662977|ref|YP_004445765.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331791|gb|AEE48892.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 231

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARN----LTER 177
                     S+ L      I++ H         +       F+++   A      LT R
Sbjct: 114 CRGAWGYALKSDSLERIETAILDVHHGGGYFSPAIAGKVARFFQEKELKADPDFCNLTAR 173

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E   L+   +G   +EIA  + +S   V++++     KL   ++ +AI KAI    
Sbjct: 174 ELEVLKYLVNGKRYQEIANAMFISYEGVHSHVKKVYEKLHVNSKSEAIIKAIDAKL 229


>gi|294811306|ref|ZP_06769949.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC
           27064]
 gi|294323905|gb|EFG05548.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC
           27064]
          Length = 231

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L++A DG  + EIA +L LSV TV  YL +   KL+A NR+ AI  A   G
Sbjct: 169 PLTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESG 228

Query: 233 YI 234
           ++
Sbjct: 229 WL 230


>gi|167551640|ref|ZP_02345394.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205323615|gb|EDZ11454.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 212

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +GYT+  I+EKL +S+ TV  +  +   KL      + +  A R   
Sbjct: 150 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNYARRMRL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|153006395|ref|YP_001380720.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029968|gb|ABS27736.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
          Length = 176

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + +S A  LT+RE     L  DG  S E+AE+LG++  TV ++L +   KL   NR++  
Sbjct: 111 QAASPADGLTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVELA 170

Query: 226 AKAIRF 231
            + ++ 
Sbjct: 171 RRLVQH 176


>gi|78484550|ref|YP_390475.1| LuxR family transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78362836|gb|ABB40801.1| transcriptional regulator, LuxR family [Thiomicrospira crunogena
           XCL-2]
          Length = 205

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             L+ RE   ++    G ++ EIAE++ +S  TV A++ S   KLDA +R+  + K
Sbjct: 141 ELLSAREIETMEWILQGKSNHEIAEQMAISERTVKAHVHSLLEKLDAKDRLNLVIK 196


>gi|108763554|ref|YP_631320.1| fruA protein [Myxococcus xanthus DK 1622]
 gi|30962571|dbj|BAC76753.1| DNA-binding protein [Myxococcus xanthus]
 gi|108467434|gb|ABF92619.1| fruA protein [Myxococcus xanthus DK 1622]
          Length = 229

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 35/115 (30%), Gaps = 7/115 (6%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTER 177
               +GY+             I              L    +              LT+R
Sbjct: 108 DEGASGYLFRAGLGTTAVASAINSLVRGERLFPVQLLRNDFEHPPVTSPTASVLLALTQR 167

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           E   L     G  + +IA  L ++  TV +++     KL A NR Q   +A   G
Sbjct: 168 EREVLAYVAGGADNLKIAAHLQIAERTVKSHVTQLYRKLGAENRTQLALRACHLG 222


>gi|317405267|gb|EFV85597.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 186

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              NLT RE        +G + +EIA +L +S  TV  +      KLDA N  + ++K
Sbjct: 121 RTANLTRREREISAYVANGLSCKEIAMRLDISYRTVEVHRARIMRKLDAKNTAELVSK 178


>gi|319779529|ref|YP_004130442.1| two-component response regulator [Taylorella equigenitalis MCE9]
 gi|317109553|gb|ADU92299.1| two-component response regulator [Taylorella equigenitalis MCE9]
          Length = 206

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT RE   L+    G  +++IA+ L +S+ TV A+  +   KL+  N    I  A++
Sbjct: 143 KLTSREQQVLERIVAGRLNKQIADDLSISIKTVEAHRANIMEKLEVSNVADLIKVALK 200


>gi|304404077|ref|ZP_07385739.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304347055|gb|EFM12887.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 220

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              +A ++         +   +   +  KR  A   LT  E S ++   DG +++EIA  
Sbjct: 126 HPDVARKLAGMIGNGASRPAPEAQAVEPKRELAPFGLTAAEQSIVRHIADGLSNKEIAAS 185

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L LS  TV  Y+     KL+  +R Q     ++ 
Sbjct: 186 LFLSEGTVKNYISDILNKLELRDRTQIAIFYLKL 219


>gi|297243056|ref|ZP_06926994.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
 gi|296889267|gb|EFH28001.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
          Length = 246

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
             F+ L K RS +   L  +E   + L   GYT+ +IA +LGL  +T+N ++     KL 
Sbjct: 145 ESFIRLSKSRSRSV--LPPQELKIMDLLAKGYTTNQIAAQLGLMPNTINTHIHRIYKKLH 202

Query: 218 AVNRIQAI 225
             NR+QAI
Sbjct: 203 VSNRVQAI 210


>gi|325677216|ref|ZP_08156882.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325551913|gb|EGD21609.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 283

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAE 196
             +               V      L    S+ A   L+ RE   L     G  + EIAE
Sbjct: 185 RSIADRLDDASLTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAE 244

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +LGL + T+ +Y+ +   KL+  +R +A+ +A R G I
Sbjct: 245 RLGLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282


>gi|282865409|ref|ZP_06274461.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559882|gb|EFB65432.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 203

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 61/178 (34%), Gaps = 8/178 (4%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           DI  +     GD+ L         +    +  E    +  + +  L   L     +    
Sbjct: 28  DIEVVAQAARGDEVLAAAREH--AVDVALLDIEMPGMNGIEAAAELRRELPDIKIVVVTT 85

Query: 123 RLGFH--KNGYVIFTSEFLMLANEVIIEAHGACYQV----ITDFLELFKKRSSAARNLTE 176
                  +         FL+        A      +    + D        +  A  LT+
Sbjct: 86  FGRPGYLRRAMESGADAFLVKDAPSAQLADAVRRVLGGERVIDPALAAAALAEGANPLTD 145

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+ A DG T+ EIA  + LS  TV  YL +A  K  A NR +A+  A   G++
Sbjct: 146 REREVLRAAADGATNVEIAGAMHLSPGTVRNYLSTAIQKTAARNRTEAVRVAGEKGWL 203


>gi|257055940|ref|YP_003133772.1| transcriptional regulator, LuxR family [Saccharomonospora viridis
           DSM 43017]
 gi|256585812|gb|ACU96945.1| transcriptional regulator, LuxR family [Saccharomonospora viridis
           DSM 43017]
          Length = 894

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 14/234 (5%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +  + +  L  ++    A+ +    ++    +P        L        +    L  
Sbjct: 664 AEARADAAGVLRALRPL--AQGWITTHLDDTGSWPWADLYAHALV-QQNRYTEADEFLTR 720

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
                 L H  S    +     +         +     +  L   A +            
Sbjct: 721 RENRVGLRHSRSERARLAAARGRLLGAQGDLDRAINAFDRALTLLADLPLRYDQARVNFA 780

Query: 131 Y---VIFTSEFLMLA-----NEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERET 179
           Y   +    +             +    GA   V     EL       AR    LT +E 
Sbjct: 781 YGQTLRRAGKRRDADVALSTARELFAGLGAATYVSRCDRELKAGGQPGARADTELTPQEQ 840

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  QL   G ++ E+A +L +S  TV  +L     KL   +R +  A   R G 
Sbjct: 841 AVSQLVARGLSNREVAAELYVSTKTVQYHLTRIYAKLGIRSRAELAALWGRAGL 894


>gi|88807455|ref|ZP_01122967.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88788669|gb|EAR19824.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 261

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 39/83 (46%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +    L     +    ++LT RE   L+    G T+ EIAE L +S+ TV +++ S
Sbjct: 169 ISGVLHHSRLSSSGGQQLPLQDLTMREEDVLRGLCRGMTNLEIAEDLLVSIETVKSHVSS 228

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A +R  A+  A R G +
Sbjct: 229 LLRKLPAKDRTAAVVTAFREGLV 251


>gi|332662577|ref|YP_004445365.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331391|gb|AEE48492.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 231

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           R LT+RE   L L  + YT++EIAE+L +S+ TV  +  +  +K+   N    + +AI
Sbjct: 150 RRLTKREQQILGLIVEEYTNQEIAEELFISIPTVETHRKNLILKMGVRNTAGLVREAI 207


>gi|297563772|ref|YP_003682746.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848220|gb|ADH70240.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 234

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +    +S    LT RE   L L G G +++EI   L LS  T   ++G    KL   +R
Sbjct: 158 AVAPGSASRLDVLTGRERDVLALVGRGMSNQEIGAALHLSPATARTHVGRLLAKLGVRDR 217

Query: 222 IQAIAKAIRFGYI 234
           +  +  A   G +
Sbjct: 218 VGLVVVAYETGLV 230


>gi|261346507|ref|ZP_05974151.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
 gi|282565500|gb|EFB71035.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
          Length = 222

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 4/122 (3%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
                             +R        +           + ++  +          L  
Sbjct: 93  FFHDFMQPNQLADMAEIFIRRKNKIIAGISVLR-DKPFTPQEVVRLNAILPIA---ELMT 148

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           F     +  + T +E   + L  +G +++ IA  LG+S+ TV  +L +   K +  NR +
Sbjct: 149 FDVLPDSLVSYTPKEQEIIHLVREGASNKRIALLLGISLSTVKTHLRNIFTKANVSNRTE 208

Query: 224 AI 225
            +
Sbjct: 209 LV 210


>gi|37223193|gb|AAQ90190.1| LuxR [Photobacterium phosphoreum]
          Length = 200

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 11/184 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIMYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
           +           + +   H           ++ ++ ++    + +  +L  RE  CL  A
Sbjct: 138 LSLAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNYDLXXREKECLAWA 196

Query: 186 GDGY 189
            +G 
Sbjct: 197 CEGK 200


>gi|89096863|ref|ZP_01169754.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088243|gb|EAR67353.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 201

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
              +  + EA    +        EL          LT RET  L+ A  G+T  +IA +L
Sbjct: 105 DTPSRDLAEAVRRVHAGNRMISPELSLAMWEEKSPLTPRETEILESAAAGHTMAQIASQL 164

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            LS  TV  Y+     KL A NRI+A+ +A   G+I
Sbjct: 165 YLSHGTVRNYMSEIIGKLGAANRIEAVNQAKAKGWI 200


>gi|84684327|ref|ZP_01012229.1| DNA-binding response regulator, LuxR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668080|gb|EAQ14548.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 225

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 ++    LT ++   LQL  +G  +++IA  L ++  TV A++ +   KL   +R
Sbjct: 143 RRGDDAATRIATLTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSR 202

Query: 222 IQAIAKAIR 230
            QA+  A  
Sbjct: 203 TQAVLIAKE 211


>gi|298247828|ref|ZP_06971633.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297550487|gb|EFH84353.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1037

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%)

Query: 145  VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
             +I               +    +     L+ +E   L+L   G+T+++IAE+L +SV+T
Sbjct: 948  ALIILRTITQSAGLPIAPVADSDNLLFEPLSIQEQRVLRLLAAGWTNKDIAEELIVSVNT 1007

Query: 205  VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            V  ++     KL   NR+QA   A     +
Sbjct: 1008 VKDHVKHLYRKLGINNRLQAGEAARHLKLL 1037


>gi|260459985|ref|ZP_05808238.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Mesorhizobium opportunistum WSM2075]
 gi|259034196|gb|EEW35454.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Mesorhizobium opportunistum WSM2075]
          Length = 871

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAG 186
            G +   +        +   A        T  +   K  +  A    LT+RET  L+   
Sbjct: 756 EGLMRLRAAQAKTDPALSAYAARIIDAAQTMPVATRKPAAPTADKEQLTQRETELLRCLS 815

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +G ++ +IA  L +S  TV  +L +   KL   NR+QA+  A
Sbjct: 816 EGMSNRDIAGALSVSETTVKWHLKNIFGKLSVSNRVQAVRAA 857


>gi|70726587|ref|YP_253501.1| hypothetical protein SH1586 [Staphylococcus haemolyticus JCSC1435]
 gi|68447311|dbj|BAE04895.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 200

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT +E   L+  G+G +++E+A+KL LS  TV  Y  +   KL+A NR  A  KA  
Sbjct: 137 ANPLTHKEQVVLREIGEGLSNKEVADKLYLSNGTVRNYTSNIIDKLEAENRFDAWKKANE 196

Query: 231 FGYI 234
            G+I
Sbjct: 197 KGWI 200


>gi|315608389|ref|ZP_07883377.1| transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315249849|gb|EFU29850.1| transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 318

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +A   L++RE   +     G T++EIA+ L +S++TV  +  +   KL   +       
Sbjct: 245 PNAEDMLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIY 304

Query: 228 AIRFGYI 234
           AI    +
Sbjct: 305 AIVNNLV 311


>gi|288926112|ref|ZP_06420040.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
 gi|288337152|gb|EFC75510.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
          Length = 313

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +A   L++RE   +     G T++EIA+ L +S++TV  +  +   KL   +       
Sbjct: 240 PNAEDMLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIY 299

Query: 228 AIRFGYI 234
           AI    +
Sbjct: 300 AIVNNLV 306


>gi|253574407|ref|ZP_04851748.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251846112|gb|EES74119.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 338

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 1/102 (0%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
                    +    +         +   G+        L+      +    LT RE    
Sbjct: 226 HNANDGEPALPGLRDEARPRGCEAMVLDGSPAPESLPKLKPEAAIYARTD-LTHREKEVA 284

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            LA +G T+ +IA +L LS  T+  ++ S   K+ A NR Q 
Sbjct: 285 ALASEGLTNRDIASRLFLSEVTIKKHMRSIFQKVGASNRTQL 326


>gi|226361383|ref|YP_002779161.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226239868|dbj|BAH50216.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 211

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTER 177
           +  G             L+ A   + E            + + +    +R      L+E+
Sbjct: 95  IMAGASGFVLKQILGTDLVAAVRTVGEGGSLLDSRATSALMNRIR-SARRDDPLAQLSEQ 153

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E +   L G+G T+ EIAE+L L+  T+  Y+     KL    R QA   A   
Sbjct: 154 ERAVFDLIGEGLTNREIAERLFLAEKTIKNYVSRLLSKLGMQRRTQAAVLATEL 207


>gi|188591560|ref|YP_001796159.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus
           taiwanensis]
 gi|170938955|emb|CAP63962.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus
           taiwanensis LMG 19424]
          Length = 210

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +       S   L  R+         +   +          +              E+++
Sbjct: 53  LDMTMPGISGIDLIRRVRLEWPSLVILVLSMHNEAQVASRALRAGASGYVTKDSDPEILL 112

Query: 148 EAHGACYQ-------VITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            A              + D +   ++   + A   L++RE   LQ    G T  EIAE L
Sbjct: 113 GAIRKLAAGGKFIDPALVDAMVFHQRGTDAPAHEVLSDREFQVLQRLATGQTVNEIAESL 172

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            LS  T++ +      KL   N  + I  AIR G+
Sbjct: 173 SLSAKTISTHKMRLMQKLGLQNNAELIRYAIRHGF 207


>gi|315181979|gb|ADT88892.1| two component transcriptional regulator, LuxR family [Vibrio
           furnissii NCTC 11218]
          Length = 207

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERET 179
           + +G             ++ A+  I+  H              L  + S   + L++RE 
Sbjct: 93  LHMGASGFVSKSEDITNIIDASRAILSGHSYFPVASFHHQNAALSGQESEMLKLLSDREM 152

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LQ    G T++EIA+K+ LS  T++ Y      KL + + ++ I  A R G +
Sbjct: 153 MVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGVV 207


>gi|312868047|ref|ZP_07728251.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096451|gb|EFQ54691.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
          Length = 228

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+  E   +Q  G G +++EIA KL LS  TV  YL +   KL+  +R Q    +++ 
Sbjct: 156 KDLSTTEWRIIQEVGYGESNKEIAAKLFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQT 215

Query: 232 G 232
           G
Sbjct: 216 G 216


>gi|309799837|ref|ZP_07694044.1| transcriptional regulatory protein DegU [Streptococcus infantis
           SK1302]
 gi|308116553|gb|EFO54022.1| transcriptional regulatory protein DegU [Streptococcus infantis
           SK1302]
          Length = 227

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+  E   +Q  G G +++EIA KL LS  TV  YL +   KL+  +R Q    +++ 
Sbjct: 155 KDLSTTEWRIIQEVGYGESNKEIAAKLFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|301054683|ref|YP_003792894.1| salavaricin two-component response regulator [Bacillus anthracis
           CI]
 gi|300376852|gb|ADK05756.1| salavaricin two-component response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 191

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ K
Sbjct: 121 TETIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTK 180

Query: 228 AIRFGYI 234
            I+ GYI
Sbjct: 181 GIKLGYI 187


>gi|297156203|gb|ADI05915.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 1003

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L   G ++ +IAE+L +S  T + ++ +   KL A  R +A A A R G
Sbjct: 940 GLTARERDVLRLVAAGRSNRQIAEELFISPKTASVHVSNIMAKLGASGRGEAAAIAHRLG 999


>gi|296877165|ref|ZP_06901205.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|322390755|ref|ZP_08064267.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|296431685|gb|EFH17492.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|321142582|gb|EFX38048.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 228

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+  E   +Q  G G +++EIA KL LS  TV  YL +   KL+  +R Q    +++ 
Sbjct: 156 KDLSTTEWRIIQEVGYGESNKEIAAKLFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQT 215

Query: 232 G 232
           G
Sbjct: 216 G 216


>gi|295093014|emb|CBK82105.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Coprococcus sp. ART55/1]
          Length = 217

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            L+ +E + ++L  DG  ++EIA  L LS  TV  Y+ S   KL   +R Q  
Sbjct: 156 ELSSKEMNIIRLVADGLNNKEIASSLYLSEGTVRNYISSILDKLQLRDRTQLA 208


>gi|225568587|ref|ZP_03777612.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM
           15053]
 gi|225162603|gb|EEG75222.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM
           15053]
          Length = 206

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E+E + + L  DG++++EIAEK+ LS  TV  YL +   KLD  +R Q      + 
Sbjct: 150 EKEYTLITLVADGFSNKEIAEKMFLSEGTVRNYLSNILDKLDLRDRTQLAVFYYQH 205


>gi|223937694|ref|ZP_03629596.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893666|gb|EEF60125.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 210

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                   A  L  RE   L     G ++ +IA  LG+S  TV  +L     KL   +R 
Sbjct: 134 FDSSEPLLALGLAPREAEVLLWVTQGKSNGDIASILGISEWTVKKHLLHIFEKLGVESRN 193

Query: 223 QAIAKAIR 230
            A  +A+ 
Sbjct: 194 AATLRALE 201


>gi|160885790|ref|ZP_02066793.1| hypothetical protein BACOVA_03794 [Bacteroides ovatus ATCC 8483]
 gi|237719368|ref|ZP_04549849.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|260175331|ref|ZP_05761743.1| transcriptional regulator [Bacteroides sp. D2]
 gi|299149242|ref|ZP_07042302.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
 gi|315923564|ref|ZP_07919804.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108603|gb|EDO10348.1| hypothetical protein BACOVA_03794 [Bacteroides ovatus ATCC 8483]
 gi|229451228|gb|EEO57019.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|298512676|gb|EFI36565.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
 gi|313697439|gb|EFS34274.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 203

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++       L++RE   +     G T++EIAEKL LS+HTV  +  + + KL   +   
Sbjct: 125 EEEEMDNQDTLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAG 184

Query: 224 AIAKAIRFGYI 234
               AI    +
Sbjct: 185 LTIYAIVNKLV 195


>gi|146308469|ref|YP_001188934.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp]
 gi|145576670|gb|ABP86202.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp]
          Length = 221

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
               +        A   LTERE   L L G G ++++IA +LG+S  TV  Y+ S   K 
Sbjct: 3   HASLVLTAAPPVPAWEELTEREGQTLALIGAGLSNKQIARELGISDGTVKIYVRSLLRKF 62

Query: 217 DAVNRIQAIAKAIRFG 232
              +R++   +  R G
Sbjct: 63  RLSSRLELATRLHRRG 78


>gi|150397182|ref|YP_001327649.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150028697|gb|ABR60814.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 226

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 38/78 (48%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           V++   E   +R +  + LT RE    +LA  G  S EIA +LG++  TV  +L S   K
Sbjct: 146 VVSRIRERDAERRAVLQKLTPRELEISRLAASGLRSREIAARLGIAPGTVKLHLHSVYGK 205

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L+   R++    A R   
Sbjct: 206 LNLTTRVELANLAQRLQL 223


>gi|84687744|ref|ZP_01015616.1| two component transcriptional regulator, LuxR family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664245|gb|EAQ10737.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 215

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +Q     L   +       +LT ++   LQL   G  +++IA +L ++  TV A++ 
Sbjct: 126 ALSHQSANAPLTAREDALVRISHLTRQQARILQLICAGQMNKQIAYELSIAETTVKAHVT 185

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           +   KL   +R QA+  A   
Sbjct: 186 AIMRKLGVQSRTQAVLIAQEA 206


>gi|119714227|ref|YP_919369.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119526136|gb|ABL79506.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 574

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARN--LTERE 178
            R    ++  V  T     L     + A     Q  +    L  K R+       L+ RE
Sbjct: 449 ARSLADRDRGVAVTEARSALQAFDRMGATSEADQAASFLRGLGIKGRTGPRDGVVLSRRE 508

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              L L  +G ++ EIAE+L +SV T   ++ +   KL   +R +A A A+
Sbjct: 509 QEVLSLVVEGLSNAEIAERLFISVKTAGHHVSNILTKLGVRSRTEATAYAL 559


>gi|226312572|ref|YP_002772466.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226095520|dbj|BAH43962.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 376

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +    S+    LT +E    +L   G T+++I+ KL +S++TV  +L +   K++  NR
Sbjct: 308 RIASHDSNKLALLTPKEWEVYELVQQGSTNKQISGKLHISLNTVKRHLQNIYKKMEVTNR 367

Query: 222 IQA 224
              
Sbjct: 368 TSL 370


>gi|222081078|ref|YP_002540441.1| two-component nodulation response regulator protein [Agrobacterium
           radiobacter K84]
 gi|221725757|gb|ACM28846.1| two-component nodulation response regulator protein [Agrobacterium
           radiobacter K84]
          Length = 784

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
               F+  +++V          V +      +        L++RE   LQL   G +++ 
Sbjct: 690 RIRSFIETSSDVRTALSIFSASVNSPQARALQG------GLSQREAQMLQLIAGGLSNKR 743

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA+ L +S  TV  +LG+   KL    R +A+  A   G++
Sbjct: 744 IAQTLNISEVTVKFHLGNLFRKLGCNRRAEALRAATALGWL 784


>gi|8708904|gb|AAF78795.1| putative two-component system transcriptional response regulator
           TcsR [Bradyrhizobium japonicum]
          Length = 223

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R Q
Sbjct: 144 MTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQ 203

Query: 224 AIAKAIR 230
           A+  A R
Sbjct: 204 AVIAAAR 210


>gi|119717828|ref|YP_924793.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119538489|gb|ABL83106.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 229

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAA------RN 173
            +R G         T   L+ A   + E       ++    L+ F      A        
Sbjct: 109 TIRGGARGYVTKTITGPELVQAIGRVAEGDAVFSPRLAGFVLDAFSGSIDVAAVDEDLDR 168

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   ++L   GY  +E+A++L +S+ TV  ++ S   KL   +R +    A     
Sbjct: 169 LTEREREVMRLIARGYAYKEVAKELFISIKTVETHMSSVLRKLQLSSRHELTRWASDRRL 228

Query: 234 I 234
           +
Sbjct: 229 L 229


>gi|114561545|ref|YP_749058.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114332838|gb|ABI70220.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 202

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L ++E   L+LA +G ++ +IA +L ++  TV  YL  A  KL+A NR
Sbjct: 130 ELAFTAIGEIDPLNDKERRALRLASEGLSTSDIASQLFIAEGTVRNYLSEAISKLNASNR 189

Query: 222 IQAIAKAIRFGYI 234
           I A   A + G++
Sbjct: 190 IDAARIAKQKGWL 202


>gi|325521463|gb|EGD00283.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 207

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 16/208 (7%)

Query: 29  KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII 88
            A   ALY  ++ +     ++                   +    D F  +       + 
Sbjct: 3   GAERLALYICDAGMTIDFFERR-----GLPDAFHRQYLDDMY-RLDPFDENLADLPD-VD 55

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII- 147
              + +    + +G    R          +    R G    G  +   +    +    I 
Sbjct: 56  VALLSDHLAHDGAGAEYRRFLESFQIANMVEMVFRTGNVLAGMSVCLPQACDRSTTESIC 115

Query: 148 -EAHGACYQVITDFLEL-------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
             AH     ++ +   L        +    A   L++RE    +L   G+++ ++A  L 
Sbjct: 116 KAAHAFHPYILFNLSVLFKDGKIGSRDDIIARYGLSKREAQVAELICKGFSNGDLARALH 175

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +SV TV  +L +   K    NR   ++ 
Sbjct: 176 VSVATVKTHLLNIFAKTSVTNRTSLVSL 203


>gi|319940899|ref|ZP_08015237.1| hypothetical protein HMPREF9464_00456 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805615|gb|EFW02403.1| hypothetical protein HMPREF9464_00456 [Sutterella wadsworthensis
           3_1_45B]
          Length = 249

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE+  + L   G +  EI   LG+S HTV A++     KL   +R +A+ +A   G 
Sbjct: 187 LSQRESEIIMLLAKGISFSEIGGILGISPHTVTAHIKKIYKKLGVHSRGEAVYEATCMGL 246

Query: 234 I 234
           +
Sbjct: 247 V 247


>gi|302533753|ref|ZP_07286095.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442648|gb|EFL14464.1| two-component system response regulator [Streptomyces sp. C]
          Length = 221

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 42/97 (43%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L+   + ++                     + A  LT+RE   L+L   G +++E++E 
Sbjct: 121 RLVARGDSLLFPAAVRALAAAHTAAAEPPAPAWAARLTDREADVLRLMATGLSNQEMSEH 180

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+   TV  ++ +   K  + +R QA+  A   G+I
Sbjct: 181 LGVGPQTVKTHVAAVLAKTGSRDRTQAVIAAYEGGFI 217


>gi|302387360|ref|YP_003823182.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
 gi|302197988|gb|ADL05559.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
          Length = 222

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            I       +  +    +    R      LT  E   +     G +++EIA+ L LS  T
Sbjct: 128 DIAAKVLRFFSQMAQADDTISVREKDMEELTRTEWKIIAQVEKGASNKEIAKNLNLSEGT 187

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIR 230
           V  YL +   KLD  +R Q    A++
Sbjct: 188 VRNYLSTILNKLDLRDRTQLAIWAVQ 213


>gi|296118527|ref|ZP_06837105.1| ATP-dependent transcriptional regulator, LuxR family
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295968426|gb|EFG81673.1| ATP-dependent transcriptional regulator, LuxR family
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 915

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-- 223
            R ++A +LT +E    Q A  G T++EIA +L LS  TV  +L     KL    R +  
Sbjct: 847 PRQASASSLTTQELEVAQNAASGLTNKEIAAQLFLSPKTVEFHLTRIYRKLQIRTRTELP 906

Query: 224 -AIAKAIR 230
            A+A+A+R
Sbjct: 907 AALAQALR 914


>gi|238854471|ref|ZP_04644810.1| Two-component response regulator [Lactobacillus jensenii 269-3]
 gi|260665481|ref|ZP_05866328.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934541|ref|ZP_06339793.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1]
 gi|313471834|ref|ZP_07812326.1| Two-component response regulator [Lactobacillus jensenii 1153]
 gi|238832898|gb|EEQ25196.1| Two-component response regulator [Lactobacillus jensenii 269-3]
 gi|239530121|gb|EEQ69122.1| Two-component response regulator [Lactobacillus jensenii 1153]
 gi|260560749|gb|EEX26726.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301379|gb|EFA93671.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1]
          Length = 201

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L++     T++E+A++L LS  TV  Y+ S   K    +R++A+  A   G
Sbjct: 140 PLTKRELEILKMLEQVATTKELAQRLFLSEGTVRNYISSILSKTGTASRLEALNLARDKG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|254482414|ref|ZP_05095654.1| transcriptional regulator, LuxR family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037419|gb|EEB78086.1| transcriptional regulator, LuxR family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 209

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 57/195 (29%), Gaps = 22/195 (11%)

Query: 50  LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109
            I                         +    SG   I+W  I      E S +  V+  
Sbjct: 5   FITPAGKLRDRWEQAFPRGRAAVRVADIGEATSGSRGIVWLDIAALAPAERSAE--VQAA 62

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQ--------VI 157
                   +      G  +   ++         L  A E + E               ++
Sbjct: 63  AAFGWPV-VVMAATPGESEAFQLLNQGAVGYCHLKAAPEQLREVALVVEHGGFWMPPELM 121

Query: 158 TDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             FL L  +              LT RE    +    G ++ EI++ L +S  TV A+L 
Sbjct: 122 QRFLALSTRVVPTKAPVSPELNELTSRELMVAEQVARGASNREISQALSISERTVKAHLS 181

Query: 211 SATVKLDAVNRIQAI 225
           +A  KL   +R+Q  
Sbjct: 182 AAFEKLGVRDRVQLA 196


>gi|254254261|ref|ZP_04947578.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124898906|gb|EAY70749.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 221

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 38/83 (45%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++ +      ++++    L+ RE   ++L   G++  EIAE++  S  T++    +
Sbjct: 139 IATEILANVFSSRTRQTTGVDTLSPRELEVVRLICAGHSIAEIAERVCRSPKTISNQKNA 198

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
           A  KL   N ++    A   G I
Sbjct: 199 AMRKLAVRNDVELARAARDLGII 221


>gi|73540995|ref|YP_295515.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72118408|gb|AAZ60671.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 210

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTER 177
            P+ +   K G + F  E     +E+         +  TD     ++R++      LT R
Sbjct: 96  VPMAVSTMKRGAIDFI-EKPFDESELRSLVERMLQKARTDHSAAREQRAAKDLLGKLTTR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 EQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 208


>gi|33592926|ref|NP_880570.1| virulence factors transcription regulator [Bordetella pertussis
           Tohama I]
 gi|61219948|sp|P0A4H2|BVGA_BORPE RecName: Full=Virulence factors putative positive transcription
           regulator BvgA
 gi|61219950|sp|P0A4H3|BVGA_BORBR RecName: Full=Virulence factors putative positive transcription
           regulator BvgA
 gi|61219953|sp|P0A4H4|BVGA_BORPA RecName: Full=Virulence factors putative positive transcription
           regulator BvgA
 gi|39353|emb|CAA41251.1| bvgA product, put. positive regulator [Bordetella bronchiseptica]
 gi|39728|emb|CAA37123.1| bvgA product, put. positive regulator [Bordetella parapertussis]
 gi|144039|gb|AAA22969.1| BvgA positive transcription regulator (put.); putative [Bordetella
           pertussis]
 gi|33572574|emb|CAE42161.1| virulence factors transcription regulator [Bordetella pertussis
           Tohama I]
 gi|332382338|gb|AEE67185.1| virulence factors transcription regulator [Bordetella pertussis CS]
          Length = 209

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + LQL   G ++++IA+ + LS  TV+ Y      KL+A + ++ I  A R   
Sbjct: 149 LSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNL 208


>gi|307131662|ref|YP_003883678.1| Response regulator of the two-component transcriptional regulatory
           system UvrY-BarA (ExpA-ExpS, GacA-GacS) [Dickeya
           dadantii 3937]
 gi|306529191|gb|ADM99121.1| Response regulator of the two-component transcriptional regulatory
           system UvrY-BarA (ExpA-ExpS, GacA-GacS) [Dickeya
           dadantii 3937]
          Length = 218

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+++L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQAETPLECLSERELQIMMMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 INGDVELTHLAIRHGL 208


>gi|302524738|ref|ZP_07277080.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302433633|gb|EFL05449.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 218

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +LT RE   L L GDG  + EIA  L +S  TV  ++ +   K    +R  A+  A+
Sbjct: 150 PDLSLTAREREILGLIGDGLRNPEIAAALVISEATVKTHINNLFAKAGFHSRADAVRYAL 209

Query: 230 R 230
           +
Sbjct: 210 K 210


>gi|113867387|ref|YP_725876.1| response regulator [Ralstonia eutropha H16]
 gi|113526163|emb|CAJ92508.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 210

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTER 177
            P+ +   K G + F  E     +E+         +  TD     ++R++      LT R
Sbjct: 96  VPMAVSTMKRGAIDFI-EKPFDESELRALVERMLTKARTDHSAAREQRAAKDLLGKLTTR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 EQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 208


>gi|1916865|gb|AAB52544.1| response regulator BpdT [Rhodococcus sp. M5]
          Length = 209

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            EV+        +     + + ++R       L+ RE   +++   G T+ E+AE+L +S
Sbjct: 116 REVMAGDDFVSLRAAAPGVGVRERRKDTDIDALSARELEVMRMVAAGLTTSEVAERLTVS 175

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV ++  S   KL    R +    A+  G +
Sbjct: 176 PRTVESHRASIQRKLHVRTRAEMARIALDEGLL 208


>gi|85703813|ref|ZP_01034916.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
 gi|85671133|gb|EAQ25991.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
          Length = 240

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT ++   LQL  +G  +++IA +L ++  TV  ++ +   KL    R QA+  A
Sbjct: 173 LTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227


>gi|309776463|ref|ZP_07671449.1| putative transcriptional regulator, LuxR family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915854|gb|EFP61608.1| putative transcriptional regulator, LuxR family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 841

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L+ERE   LQ    G +++ IAE L +S+ TV  ++ +   KL   NR++A+      
Sbjct: 778 LSERELEVLQELAQGNSNKVIAEHLYISLATVKTHILNIYGKLQVTNRVEALNYYREH 835


>gi|253997167|ref|YP_003049231.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983846|gb|ACT48704.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8]
          Length = 263

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           L+ERE S ++    G T++EI   L +S  TV  ++     KLD +NR QA+
Sbjct: 202 LSEREISIMEWVKAGKTNQEIGIILDISSFTVKNHMQRILKKLDVLNRAQAV 253


>gi|228986249|ref|ZP_04146388.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773448|gb|EEM21875.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 187

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ K I
Sbjct: 118 TIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGI 177

Query: 230 RFGYI 234
           + GYI
Sbjct: 178 KLGYI 182


>gi|222081090|ref|YP_002540453.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter
           K84]
 gi|221725769|gb|ACM28858.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter
           K84]
          Length = 500

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEI 194
                V+ +       V+     L +  S  A +     L++RE   L L   G +  E+
Sbjct: 389 EAIESVMADTSWFSRSVVDRLATLRQVSSGKAPSAQLLDLSDREKEILALICRGQSDAEM 448

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +E L LS +T+  ++ S  +K+    R  A+  A   G+
Sbjct: 449 SETLHLSKNTIRNHVASLYIKIGVNRRAAAVIWARERGF 487


>gi|149176998|ref|ZP_01855607.1| two component transcriptional regulator, LuxR family protein
           [Planctomyces maris DSM 8797]
 gi|148844253|gb|EDL58607.1| two component transcriptional regulator, LuxR family protein
           [Planctomyces maris DSM 8797]
          Length = 221

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT R+   L+    G + +E+A  + LS  +++++      KL   +R++    +IR G
Sbjct: 158 SLTSRQIEVLRHLARGKSVKEVARSMHLSEKSIDSHKYRIMHKLGIHDRVELARYSIREG 217

Query: 233 Y 233
            
Sbjct: 218 L 218


>gi|114571243|ref|YP_757923.1| two component LuxR family transcriptional regulator [Maricaulis
           maris MCS10]
 gi|114341705|gb|ABI66985.1| two component transcriptional regulator, LuxR family [Maricaulis
           maris MCS10]
          Length = 216

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +       L +R+   + L   G T++E+A  L +S +TV +++ +    LD   R   
Sbjct: 147 PRGDRPLPRLGQRQLEIVHLMAGGATNKEVAATLNISENTVKSHMRAIFEALDVHTRTAC 206

Query: 225 IAKAIRFGYI 234
           + KA   G I
Sbjct: 207 VRKAQALGMI 216


>gi|27378578|ref|NP_770107.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351726|dbj|BAC48732.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 226

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 140 MLANEVIIEAHGACYQVITDFL----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            +++  +IEA                 L  +R+  A +LT RE     L   G  +++IA
Sbjct: 121 PVSSGQLIEAIERALSQQETARGLRSRLDSRRAHVA-SLTPRERQVFDLIVRGKINKQIA 179

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +LG +  TV A+      K+   +  + ++ A   G +
Sbjct: 180 YELGTTERTVKAHRHQVMEKMQVSSLAELVSTAQLLGML 218


>gi|322378102|ref|ZP_08052588.1| transcriptional regulatory protein DegU [Streptococcus sp. M334]
 gi|321280939|gb|EFX57953.1| transcriptional regulatory protein DegU [Streptococcus sp. M334]
          Length = 198

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L  +G T ++I EK+ +S  TV+ +L +   KL   +R +AI  A + 
Sbjct: 133 DVLTSREIEMLELVRNGLTIDDICEKVYVSKRTVSNHLANIFSKLGVSSRQEAIHVAEQL 192

Query: 232 GY 233
           GY
Sbjct: 193 GY 194


>gi|260772003|ref|ZP_05880920.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP
           69.14]
 gi|260612870|gb|EEX38072.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP
           69.14]
          Length = 209

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL+  NR QA+  
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLNVTNRTQAVIL 203


>gi|255009756|ref|ZP_05281882.1| LuxR family transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313147543|ref|ZP_07809736.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313136310|gb|EFR53670.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 200

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                  D   +     +        L+ RE   L L   G  ++EIA+KL +S+ TV  
Sbjct: 109 LHQHAHHDGYPVKDMPPASPAATGHELSAREIEVLVLITKGLINKEIADKLNISLTTVIT 168

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  + T KL   +       A+  GY+
Sbjct: 169 HRKNITEKLGIKSVSGLTIYAVMNGYV 195


>gi|156975631|ref|YP_001446538.1| hypothetical protein VIBHAR_03364 [Vibrio harveyi ATCC BAA-1116]
 gi|156527225|gb|ABU72311.1| hypothetical protein VIBHAR_03364 [Vibrio harveyi ATCC BAA-1116]
          Length = 221

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT+RE    +L   G ++ +IA +  +S++T+  +  +   KL+  +R + +A A + 
Sbjct: 153 LTKREGEICKLMLQGLSNTQIARQSNVSINTIKTHASNVLHKLNVHSRYELMAMAKKH 210


>gi|152997183|ref|YP_001342018.1| response regulator receiver protein [Marinomonas sp. MWYL1]
 gi|150838107|gb|ABR72083.1| response regulator receiver protein [Marinomonas sp. MWYL1]
          Length = 250

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT+RE   ++L   G +S  IAEK  +S  TV  +  +   KL+  ++ +   K
Sbjct: 194 LTKREKEIVKLILTGLSSAAIAEKCFVSEGTVKNHRKNIYRKLNIKSQAELFRK 247


>gi|85711048|ref|ZP_01042108.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           baltica OS145]
 gi|85694961|gb|EAQ32899.1| Response regulator, LuxR family  (CheY, HTH domains) [Idiomarina
           baltica OS145]
          Length = 207

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           +  E   K S A   L+ R+   +QL   G +++EIA  LG++  T+  +L +    +  
Sbjct: 129 NLNEPRNKSSGAESFLSPRQLEIMQLLAQGLSNKEIANILGITEGTIRVHLSAIFKAIKV 188

Query: 219 VNRIQAIAK 227
            NR +A   
Sbjct: 189 SNRTEATLW 197


>gi|121606230|ref|YP_983559.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595199|gb|ABM38638.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 275

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 40/121 (33%), Gaps = 7/121 (5%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSA---ARNL 174
              + L      +     E L L    +   +           LE  +        A  L
Sbjct: 145 LVSIVLKRRGRDFDERDRERLELLRPHLAFLYRHARHARAAVTLEEGEAPLPPDIHAPGL 204

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   +     G    EIA  L +S  TV  +L    VKL    R  A+ +A+    I
Sbjct: 205 TQREAEVMHWLACGKMDAEIAALLAISPRTVQKHLEHIYVKLGVETRTAAVMRALA---I 261

Query: 235 C 235
           C
Sbjct: 262 C 262


>gi|158313488|ref|YP_001505996.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158108893|gb|ABW11090.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 217

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----------NLT 175
              +G+++       L   V +   G      T    L ++ +S  R           LT
Sbjct: 93  AGASGFLLKDVSPEQLVAAVRLVRAGDALLAPTITRRLVERFASPERVAAATHRDLATLT 152

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L+    G ++ E+A +  LS  TV  ++     KL   +R+QA+  A   G +
Sbjct: 153 PRELEVLRFLARGLSNAELAARFQLSEATVKTHVARILGKLRLRDRVQAVVVAYETGLV 211


>gi|46203993|ref|ZP_00050651.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 214

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173
           L     G+++  +    LA+ V   A G       V+   + L  + +            
Sbjct: 91  LRAGACGFLLKDAPPDELAHAVRAAAQGRPVLAPAVLRRVMTLAAENTRPPDAAAVGALA 150

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            L+ RE    +    G ++ EI   L +S+ TV  ++     KL   +R Q  A  +R 
Sbjct: 151 TLSPREREIARALARGMSNAEICAALFISLATVKTHVSRVIAKLGVESRTQVAALVLRN 209


>gi|282862429|ref|ZP_06271491.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562768|gb|EFB68308.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 247

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLA 185
           NG  +  +   + +   +++      +V+       +  ++ A     LT RE   L L 
Sbjct: 131 NGADLVAAVHTVASGTSMLDPRTTA-RVMARLRGPQQPPAAEASELDRLTPRERQILDLI 189

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           G+G T+ EIAE+L L+  TV   + +   KL    RIQA   A R
Sbjct: 190 GEGLTNREIAERLFLAEKTVKNRISAILAKLGVGRRIQAAMLAGR 234


>gi|255034528|ref|YP_003085149.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254947284|gb|ACT91984.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 206

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + NLT RE   +    +G T++E+A ++ +S+ TV  ++ +   KL   +R   I++
Sbjct: 147 SENLTPREAQIVLAIEEGLTNKEVAVRMDISLETVKYHIKNIYEKLQVNSRHALISR 203


>gi|302036829|ref|YP_003797151.1| putative LuxR family response regulator [Candidatus Nitrospira
           defluvii]
 gi|190343243|gb|ACE75631.1| putative two component transcriptional regulator [Candidatus
           Nitrospira defluvii]
 gi|300604893|emb|CBK41226.1| putative Response regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 249

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           + +LT+RE   + L G+G ++++IA +L +   TV  +L S   KLD  +R Q + +A +
Sbjct: 165 SEDLTKRERDIITLIGEGLSNKDIACRLSICSTTVRHHLTSIFGKLDVHSRQQLLIRAHK 224

Query: 231 FGYI 234
           +G +
Sbjct: 225 YGLV 228


>gi|73543101|ref|YP_297621.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72120514|gb|AAZ62777.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 231

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCL 182
                GYV+  +    L   +     G  +        + ++  +      LT RE   L
Sbjct: 116 RAGARGYVLKDAPADELMAAIEAVLAGRVFYSARIARGMAEQMPATGPLDALTRRERDIL 175

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              G G  ++EIA +LG+SV TV  +  +   KL    R   +  A+  
Sbjct: 176 GCIGRGMANKEIATQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVEQ 224


>gi|39934752|ref|NP_947028.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192290274|ref|YP_001990879.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|39648602|emb|CAE27123.1| ptwo-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
 gi|192284023|gb|ACF00404.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 208

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 13/114 (11%)

Query: 127 HKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSSAA------RN 173
                 +   +   L         + I+       +  +   +  +   + +        
Sbjct: 89  GDIAMAVNAIKNGALDFIEKPFRGKEIVSRVEEAIEAFSRRRDAGQGSKAPSYNFPGKEP 148

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT RE   L+L   G T++E   +LG+S  T+  +  +   KL A N    +  
Sbjct: 149 LTLREREVLELFSAGNTNKEAGRQLGISPRTIEYHRANIMKKLGARNATDLVRI 202


>gi|332306646|ref|YP_004434497.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173975|gb|AEE23229.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 213

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEI 194
                +++        ++     ++   +    ++    LT  +   LQL  DG  +++I
Sbjct: 113 SDAVQQLLDGEQWLPSELFEQVQKIEDSQEQAFAAKLAQLTPHQLKVLQLMADGLLNKQI 172

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           A +LG+S  T+  ++ +   KL   NR QA
Sbjct: 173 AYELGVSESTIKQHVSAVLHKLGFNNRTQA 202


>gi|323358969|ref|YP_004225365.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323275340|dbj|BAJ75485.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 206

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +      +L+ RE   L+L   G ++ ++AE+L ++  TV ++L     KL   +R
Sbjct: 133 RLMARLREPRISLSAREIEVLRLVARGASNADVAERLHITDATVKSHLAHVFSKLGVTSR 192

Query: 222 IQAIAKAIRFGYI 234
             A++ A   G +
Sbjct: 193 TAAVSTARSLGIL 205


>gi|296128509|ref|YP_003635759.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296020324|gb|ADG73560.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 211

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 149 AHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           A     +V         +R       +T RE   L     G ++ E+A +LG+   TV  
Sbjct: 122 ALLLGPRVARRLAADGPRRPVPGLDRVTAREREVLAAVAQGLSNAEVAARLGIGEQTVKT 181

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++     KL   +R Q +  A   G +
Sbjct: 182 HVSELLRKLGRRDRAQLVVAAYEGGVV 208


>gi|212634670|ref|YP_002311195.1| regulatory protein LuxR:response regulator receiver [Shewanella
           piezotolerans WP3]
 gi|212556154|gb|ACJ28608.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella
           piezotolerans WP3]
          Length = 219

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-------KRSSAA 171
                + +  +G++  +S    LA    +EA       + + +EL +       + +S  
Sbjct: 95  TISRAIHYGSSGFIPKSSSMETLA--TALEAVLFGDVWLPEGVELQEVSDDGTDQMASKL 152

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA+  A++ 
Sbjct: 153 SDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV-IALQQ 211


>gi|146282625|ref|YP_001172778.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           A1501]
 gi|145570830|gb|ABP79936.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           A1501]
          Length = 219

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAE 196
               +V+         + TD       RS     L   T RE     +   G  + EIAE
Sbjct: 112 EAVRKVLAGQTFIEQPLATDLACQRPSRSPVRGRLVDMTPREMEIFIMLARGIGNREIAE 171

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L +S  TV+ +L     KL+  ++ + +  AI  G +
Sbjct: 172 RLCISSKTVSNHLALLKSKLEVSSQAELVHLAIDQGLL 209


>gi|317474899|ref|ZP_07934168.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908802|gb|EFV30487.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 192

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +    +L+ RE   L L   G  ++EIA+KL +S+ TV  +  +   KL   +       
Sbjct: 121 TPDNHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIY 180

Query: 228 AIRFGYI 234
           A+  GY+
Sbjct: 181 AVMHGYV 187


>gi|307331693|ref|ZP_07610799.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306882672|gb|EFN13752.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 302

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 41/113 (36%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR        +        L  E++                   +       L+ RE   
Sbjct: 189 VREAHGDLRALAHRVPDRELREEILTACSRLARASSGRGRHREHRNGGGGVELSPREVDV 248

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G T+   AE+LGL   TV +YL S+  KL A  R+ A+ +A R G +
Sbjct: 249 LACVASGATNSTAAERLGLRPETVKSYLRSSMRKLGAHTRLHAVVEARRAGLL 301


>gi|270294227|ref|ZP_06200429.1| transcriptional regulator [Bacteroides sp. D20]
 gi|270275694|gb|EFA21554.1| transcriptional regulator [Bacteroides sp. D20]
          Length = 254

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S  + L+ RE   L+L   G+ S+EIA +LG+S++TVN +  +   KLDA N ++AI   
Sbjct: 188 SPDKQLSNREKEILRLIRQGFLSKEIAHQLGVSIYTVNNHRKNILSKLDANNIMEAIHIV 247

Query: 229 IRFGY 233
              G 
Sbjct: 248 ENLGI 252


>gi|119870231|ref|YP_940183.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126436928|ref|YP_001072619.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|119696320|gb|ABL93393.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126236728|gb|ABO00129.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 215

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                      +   L    +RS     L+ +E   L L G+G T+++IA ++ L+  TV
Sbjct: 122 RSLLDNRAAAALMSKLRGDVERSDPLSGLSAQERVLLDLLGEGLTNKQIAARMFLAEKTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAK 227
             Y+     KL    R QA   
Sbjct: 182 KNYVSRLLAKLGMERRTQAAVF 203


>gi|159901160|ref|YP_001547407.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894199|gb|ABX07279.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 219

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDG 188
             S    +A    + A     +V+   LE     +  K + A   LTERE     LA +G
Sbjct: 110 LISHISAVAQGETVLAGPIAQKVVRQLLEGPQPTVSTKTNDALNALTERERQVFFLAAEG 169

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             + +IA++L LS  T+  +L +   KL   N+ +    A++   
Sbjct: 170 RRNSDIAQQLILSEETIKTHLRNIYSKLGLGNKAELRLFAVQARL 214


>gi|27376305|ref|NP_767834.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349445|dbj|BAC46459.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 223

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R Q
Sbjct: 144 MTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQ 203

Query: 224 AIAKAIR 230
           A+  A R
Sbjct: 204 AVIAAAR 210


>gi|331698232|ref|YP_004334471.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952921|gb|AEA26618.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 204

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               E +++A    +  +   D     +  S     LTERE   L  A DG T  +IA +
Sbjct: 108 DSPPEQLVDAVRRVHAGLRVVDPALAAESLSQGTSPLTERERDVLVAAADGATVADIARR 167

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  +L SA  K DA  R +A+  A   G++
Sbjct: 168 LHLSEGTVRNHLSSAIGKTDARTRAEAVRIADGNGWL 204


>gi|322391432|ref|ZP_08064901.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145515|gb|EFX40907.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 228

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+  E   +Q  G G +++EIA KL LS  TV  YL +   KL+  +R Q    +++ 
Sbjct: 156 KDLSTTEWRIIQEIGYGESNKEIAAKLFLSEGTVRNYLSTILSKLNLRDRTQLAIWSVQT 215

Query: 232 G 232
           G
Sbjct: 216 G 216


>gi|319953755|ref|YP_004165022.1| two component transcriptional regulator, luxr family [Cellulophaga
           algicola DSM 14237]
 gi|319422415|gb|ADV49524.1| two component transcriptional regulator, LuxR family [Cellulophaga
           algicola DSM 14237]
          Length = 214

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT+RE   L+L  +  T++EIA+KL LS HT+ +Y  +   KL+  N       A++ G
Sbjct: 151 SLTDREKEVLKLIAEENTTQEIADKLFLSKHTIESYRKNLISKLNVKNLAGLTKHALKMG 210

Query: 233 YI 234
            +
Sbjct: 211 LL 212


>gi|304395181|ref|ZP_07377065.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304357434|gb|EFM21797.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 206

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175
             PV +   K G   F ++   +  E I++A     ++    L   ++R       + LT
Sbjct: 85  TIPVTVRAMKTGAYEFLTK--PVEPERILQAVAEALEIAEQNLASSQERREIVQRHQTLT 142

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE+  + LA  G  +++IA ++G+S  T   +      K++A +    +  A R   
Sbjct: 143 PRESEVMLLAISGLLNKQIAAEMGVSEITAKVHKRRVMEKMNARSLTDLVRAAERLNI 200


>gi|294140574|ref|YP_003556552.1| LuxR family DNA-binding response regulator [Shewanella violacea
           DSS12]
 gi|293327043|dbj|BAJ01774.1| DNA-binding response regulator, LuxR family [Shewanella violacea
           DSS12]
          Length = 219

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA--------HGACYQVITDFLELFKKRSS 169
           +     + +  +G++  +S    LA  +            H    ++  D   L  ++ +
Sbjct: 94  MTISRAVHYGSSGFIPKSSSMETLAAALASVLYGDIWLPDHAEIQEIQEDATALVARKLA 153

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
              +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA+ 
Sbjct: 154 ---DLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|209521727|ref|ZP_03270414.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209497844|gb|EDZ98012.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 293

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 79/232 (34%), Gaps = 30/232 (12%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++   L+ L  ++  +    +A  + L         P    ++ +  ++          
Sbjct: 10  PERRDGLKALLRQIDRLARFTEADEWRLLERPFKRYRPD--LVVIDWEDWMS--VAQVRA 65

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           L+  + D  +     G +P + +++ +E V+    + +       +  A     +   + 
Sbjct: 66  LLSHFPDLRISVLTDGTVPALVRALMDEGVLGVVPRDTDPCL---IVRALEMVLLGGHYV 122

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERETSCL 182
             G +        L  +                    ++         +  L+ R+   +
Sbjct: 123 PPGALAI---DPPLPTDT-------------TIRPFDEECPPPRRNKLSSGLSPRQEQIM 166

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +    G  ++ IA  LG+S  TV  +L S   +L A NR  A+  A+  G++
Sbjct: 167 RCVHMGSANKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|298483146|ref|ZP_07001326.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. D22]
 gi|298270663|gb|EFI12244.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. D22]
          Length = 200

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 152 ACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                  +   +    S          L+ RE   L L   G  ++EIA+KL +S+ TV 
Sbjct: 108 LHQHAHHNGYPVKDMPSMPPTQPHQEILSSREIEVLVLITKGLINKEIADKLNISLTTVI 167

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +  + T KL   +       A+  GYI
Sbjct: 168 THRKNITEKLGIKSVSGLTIYAVMNGYI 195


>gi|291450698|ref|ZP_06590088.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353647|gb|EFE80549.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 204

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +  D     +     A  LT+RE   L L   G T+ EIA +L +   TV +++ +
Sbjct: 122 RALALAHDPRRAAE--PPWAARLTDREREVLHLMATGLTNAEIAARLTVGPATVKSHVAA 179

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              K    +R QA+  A   G 
Sbjct: 180 VLAKTGTRDRTQAVIAAYEAGL 201


>gi|313680133|ref|YP_004057872.1| two component LuxR family transcriptional regulator [Oceanithermus
           profundus DSM 14977]
 gi|313152848|gb|ADR36699.1| two component transcriptional regulator, LuxR family [Oceanithermus
           profundus DSM 14977]
          Length = 196

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 154 YQVITDFLELFKKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            ++    L L +             +LT RE   L L   G T+ E+ + LGL   TV  
Sbjct: 107 AELARRILRLTQNPEDSSFTPPPVPSLTPREREVLDLLARGLTAREMGDILGLKPDTVRD 166

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           YL     KLDA NRI+A+ +A R G++
Sbjct: 167 YLKRLYGKLDAGNRIEALEQARRLGFL 193


>gi|309790969|ref|ZP_07685510.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308227001|gb|EFO80688.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 215

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELF--KKRSSAARNL 174
           L     GYV+  ++ + L + + +   G          ++I+ +L      +    A  L
Sbjct: 94  LAAGAVGYVLKDADAVELIHGIRVALQGGRYLSPTLAERMISAYLHQPSPDQHIDWAEML 153

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L LA  G ++ EI ++L +S  T   +  +   KL    +   +  A   G +
Sbjct: 154 TARERQVLILAAQGLSNAEIGDRLTISPRTAETHRTNLLRKLGLKGQTDLMHFAHERGLL 213


>gi|294146475|ref|YP_003559141.1| NarL-family response regulator [Sphingobium japonicum UT26S]
 gi|292676892|dbj|BAI98409.1| NarL-family response regulator [Sphingobium japonicum UT26S]
          Length = 207

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 7/148 (4%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +           +   L    +    +              +       +       A  
Sbjct: 54  LDVRMPDMDGLAVQRELRDRGIMLPVVIMTGHGDIDMAVTAMKAGASDFIEKPFEKAALL 113

Query: 152 ACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            C +         +  ++ A +       LTERE   L    +G  ++ IA  L +S  T
Sbjct: 114 GCVEAARRMAVADRGANARAEDARARLNILTEREREVLDGLVEGLPNKTIAYDLAISPRT 173

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           V  +  +   KL+  +  +A+  A   G
Sbjct: 174 VEIHRANLMQKLEVKSLAEALRIAFHAG 201


>gi|269215660|ref|ZP_06159514.1| transcriptional regulator, LuxR-family [Slackia exigua ATCC 700122]
 gi|269131147|gb|EEZ62222.1| transcriptional regulator, LuxR-family [Slackia exigua ATCC 700122]
          Length = 511

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 2/117 (1%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
               AG+A  +            +++           A         + LE      SA 
Sbjct: 386 FGIAAGLARILSTKGGIAAAFSGSADMDAEEASAGEPADPVA--AFAETLESHFDDLSAQ 443

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             LT RE     L   G+TS  IA+KL +S  TV  +  +   KLD  +R + I  A
Sbjct: 444 FGLTPREREIAMLTAQGFTSTYIADKLVISASTVRFHQQNVYRKLDIHSRHELIELA 500


>gi|256396070|ref|YP_003117634.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362296|gb|ACU75793.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---------TERETSCLQLAGDGY 189
            ++A    + A     ++I DF             L         T+RE   L L G G 
Sbjct: 117 RVVAAGDALIAPSVTRRLIADFTATPTTPKPHPEPLEHPHQIAQITDREREVLALVGQGL 176

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ EIAE+L +S  T   ++     KL+A +R+     A   G +
Sbjct: 177 SNAEIAERLIISAATAKTHVARLFAKLEARDRVHLAIIAFESGLV 221


>gi|238764023|ref|ZP_04624978.1| hypothetical protein ykris0001_15230 [Yersinia kristensenii ATCC
           33638]
 gi|238697694|gb|EEP90456.1| hypothetical protein ykris0001_15230 [Yersinia kristensenii ATCC
           33638]
          Length = 210

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  +  IA +L +S  TV  +  +   KLD     + I  + R G 
Sbjct: 149 LTPRERQILKLITEGSCNRIIATQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|221133926|ref|ZP_03560231.1| putative transcriptional regulator, LuxR family protein [Glaciecola
           sp. HTCC2999]
          Length = 77

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           L+ RE         G T+  I + L +S  TV  +  +   KL+  NR   I
Sbjct: 8   LSPREFQVANHITKGMTNRAIGDTLFISERTVKFHAANIYKKLNLKNRAGLI 59


>gi|331695588|ref|YP_004331827.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950277|gb|AEA23974.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 206

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   ++L  DG T+ +I  +L LS  TV  ++     KL    R   +  AI  G 
Sbjct: 146 LTEREADVVRLVVDGLTARQIGVRLVLSPRTVENHVQRIQRKLGVSGRAAMVRFAIENGL 205


>gi|328544840|ref|YP_004304949.1| Two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326414582|gb|ADZ71645.1| Two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 221

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +L +S  TV A++ +   KL   +R QA+  A R
Sbjct: 152 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASR 208


>gi|229162035|ref|ZP_04290009.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228621441|gb|EEK78293.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 186

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ K I+ 
Sbjct: 120 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKL 179

Query: 232 GYI 234
           GYI
Sbjct: 180 GYI 182


>gi|229185386|ref|ZP_04312569.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228598119|gb|EEK55756.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 186

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ K I+ 
Sbjct: 120 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKL 179

Query: 232 GYI 234
           GYI
Sbjct: 180 GYI 182


>gi|226197773|ref|ZP_03793348.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225930382|gb|EEH26394.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 251

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 23  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 74

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 75  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 131

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 + +     +          +   L   +  +R + 
Sbjct: 132 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 191

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 192 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 246


>gi|171911633|ref|ZP_02927103.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 222

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTERETSCLQLAGDGYTS 191
            FL     V+        ++    LE F     +  SS    L++RE    +L G+G T+
Sbjct: 118 TFLTAVRTVLAGQRYMSSRLAASVLESFGQSKPRGSSSPIEKLSDREFEVFRLFGEGKTA 177

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +EIA +L LS  TV+ +      KL      + I +A+R 
Sbjct: 178 KEIAAQLNLSPKTVSVHRDHIKEKLGFSTSAEMIRQAVRH 217


>gi|146281890|ref|YP_001172043.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145570095|gb|ABP79201.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 192

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 119 AKAASAGLASLTPQQFRVLTMVCDGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQ 178

Query: 224 AIAKAIRFG 232
           A     + G
Sbjct: 179 AALLLQQMG 187


>gi|118478475|ref|YP_895626.1| salavaricin two-component response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|196043050|ref|ZP_03110289.1| salavaricin two-component response regulator [Bacillus cereus
           03BB108]
 gi|225865118|ref|YP_002750496.1| salavaricin two-component response regulator [Bacillus cereus
           03BB102]
 gi|118417700|gb|ABK86119.1| salavaricin two-component response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|196026534|gb|EDX65202.1| salavaricin two-component response regulator [Bacillus cereus
           03BB108]
 gi|225790282|gb|ACO30499.1| salavaricin two-component response regulator [Bacillus cereus
           03BB102]
          Length = 204

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ K I+ 
Sbjct: 138 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKL 197

Query: 232 GYI 234
           GYI
Sbjct: 198 GYI 200


>gi|78059869|ref|YP_366444.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77964419|gb|ABB05800.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 932

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +  A +LT +E   LQL   GY++  +AEKL +S  TV  +L +   KL+  NR  
Sbjct: 861 EDGTALPAESLTRKELRVLQLLAQGYSNGALAEKLFVSDSTVRTHLRNINAKLNVPNRTS 920

Query: 224 AIAKAIRFGYI 234
           A+A   R G +
Sbjct: 921 AVAAGRRLGLV 931


>gi|126440864|ref|YP_001058373.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           668]
 gi|126220357|gb|ABN83863.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           668]
          Length = 279

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++     +  L     G L   +    P  L       V+   
Sbjct: 63  LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 119

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 120 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|288916220|ref|ZP_06410600.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288352411|gb|EFC86608.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 211

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTER 177
           +  G             L+ A   I          +T  +    +           L  R
Sbjct: 96  IMAGASGYLLKQIRGNDLVGAIRTIAAGRSLLDPAVTQKVLARLRDEPVEDEQLSALGAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L+L  +G T+ +IA  + LS  TV  Y+ +   KL   +R QA   A R 
Sbjct: 156 ERQILRLIAEGMTNRQIAACVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARL 209


>gi|302536960|ref|ZP_07289302.1| response regulator [Streptomyces sp. C]
 gi|302445855|gb|EFL17671.1| response regulator [Streptomyces sp. C]
          Length = 217

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                      ++A  V                 +    ++A  +LT RE   L   G+G
Sbjct: 113 AAVRTVARGEGLIAPAVTRRLIAEFAAPKAVRAPVRPGAAAAVESLTRREREVLGALGEG 172

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ EIA +L ++  TV  ++     KL+  +R+QA   A   G 
Sbjct: 173 LSNAEIAVRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 217


>gi|251779454|ref|ZP_04822374.1| transcriptional regulator, LuxR family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083769|gb|EES49659.1| transcriptional regulator, LuxR family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 834

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+ E   L L   G ++ EI+E L +   TV  +  +   KL+  NRIQAI  A  FG 
Sbjct: 771 LTKSEIKILYLINKGMSNIEISEYLNIKKDTVKFHTKNIYSKLNVKNRIQAIKVAKEFGI 830

Query: 234 I 234
           I
Sbjct: 831 I 831


>gi|239993641|ref|ZP_04714165.1| LuxR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 209

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 33/70 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S    LT RE     L   G TS++IAE L +S+ T   +  +   KL+  +  + 
Sbjct: 139 QKHVSPLSVLTRREREVFFLVVAGNTSKKIAELLDMSLKTAENHRSNIYKKLNLSSSAEL 198

Query: 225 IAKAIRFGYI 234
           I  A + G +
Sbjct: 199 IRMAGKAGLL 208


>gi|229494564|ref|ZP_04388327.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
 gi|229318926|gb|EEN84784.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
          Length = 217

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +  S+  + +++ +         ++           +   +LTERE   L +   G
Sbjct: 118 QAVRVVASDHSLFSSDSLRA-------IVASAPRRQAPDLTPLASLTEREREVLTILATG 170

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +  IAE+L L   TV  ++ S   KL   NR+ A   A R G +
Sbjct: 171 AANSVIAERLYLGESTVKTHISSLFAKLGVPNRVSASLIAFRCGLV 216


>gi|228991885|ref|ZP_04151821.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228767614|gb|EEM16241.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 189

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+ E   LQL   GY  +EIA  L  S  T++ ++     KLD  + ++A+ K I+ 
Sbjct: 120 EELTDSEKQILQLLCGGYKRKEIATMLYASERTISNHIQHMFDKLDVSSSLEAVTKGIQL 179

Query: 232 GYI 234
           GYI
Sbjct: 180 GYI 182


>gi|188588839|ref|YP_001922350.1| transcriptional regulator, LuxR family protein [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499120|gb|ACD52256.1| transcriptional regulator, LuxR family protein [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 834

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+ E   L L   G ++ EI+E L +   TV  +  +   KL+  NRIQAI  A  FG 
Sbjct: 771 LTKSEIKILYLINKGMSNIEISEYLNIKKDTVKFHTKNIYSKLNVKNRIQAIKVAKEFGI 830

Query: 234 I 234
           I
Sbjct: 831 I 831


>gi|111223193|ref|YP_713987.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111150725|emb|CAJ62426.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 211

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 46/154 (29%), Gaps = 15/154 (9%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----------EFLM 140
           +       +   +   L         +              I                L+
Sbjct: 55  LDARLEDGNGIDVCRDLRSAHPEIGCLILTSYDDDDALFAAIMAGAAGYLLKQIKGTDLV 114

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAE 196
            A   I          +T  +    +   A       L ERE   L L  +G T+ +IA 
Sbjct: 115 GAIRTIAAGRSLLDPAVTQRVLTRLREGPAEDRKLAALGERERQILVLIAEGLTNRQIAG 174

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           ++ LS  TV  Y+ +   KL+  +R QA   A R
Sbjct: 175 RIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 208


>gi|52138494|dbj|BAD46749.1| transcriptional regulator falA [Fluoribacter dumoffii]
          Length = 219

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           ++G     +    +A            ++      L + + S    L+ERE   + +   
Sbjct: 105 ESGAEEMAAAIRKVAKGERYLIAEIAQKM--AINSLEEVQGSPFDLLSEREMQVMLMITT 162

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G   +EI+++L LS  T+N Y      KL   N ++    A++ G I
Sbjct: 163 GMNVQEISDRLFLSTKTINGYRYRTFEKLGIKNDVELTYLALKHGII 209


>gi|83952281|ref|ZP_00961013.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM]
 gi|83837287|gb|EAP76584.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM]
          Length = 219

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L +  +  +  L+ RE   L L  DG T+ +I+ +LGLS +TV  YL +   KL   +R 
Sbjct: 149 LRRLTNDTSDALSRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLGVNSRG 208

Query: 223 QAIAK 227
            AIAK
Sbjct: 209 GAIAK 213


>gi|307295174|ref|ZP_07575013.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878677|gb|EFN09896.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 207

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 7/148 (4%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +           +   L    +    +              +       +       A  
Sbjct: 54  LDVRMPDMDGLAVQRELRARGIMLPVVIMTGHGDIDMAVTAMKAGASDFIEKPFEKAALL 113

Query: 152 ACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            C +         +  ++ A +       LT+RE   L    +G  ++ IA  LG+S  T
Sbjct: 114 GCVEAARQVAVADRGANARAGDARARLNILTDREREVLDGLVEGLPNKTIAYDLGISPRT 173

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           V  +  +   KL+  +  +A+  A   G
Sbjct: 174 VEIHRANLMQKLEVKSLAEALRIAFHAG 201


>gi|269217647|ref|ZP_06161501.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269212582|gb|EEZ78922.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 212

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 43/99 (43%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           +E +               + +T  +            L+E+E   L LA +G T+ +IA
Sbjct: 112 AEAIRATASGRTVLDERAARAVTQSVRGGSSADGGVEELSEQEKRVLALAAEGMTNRQIA 171

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             LG+   TV  Y   A  KLD V+R  A+ +A+R G I
Sbjct: 172 TALGVGAATVKTYFSRAFAKLDVVDRTSAVVEAMRRGEI 210


>gi|302877496|ref|YP_003846060.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302580285|gb|ADL54296.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 215

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT R+   L+    G +++EIA    L+  TV  ++ +    L    R++A+  A R G
Sbjct: 149 GLTPRQMEVLEHICAGMSNKEIASHTHLAEGTVKIHVAAVYQTLKVNGRLEAVRVAERLG 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|261418524|ref|YP_003252206.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765338|ref|YP_004130839.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374981|gb|ACX77724.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317110204|gb|ADU92696.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 221

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           TERE   + L   G +++EIA++L LS  TV  Y+ S   K    +R Q    
Sbjct: 162 TERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214


>gi|190576052|ref|YP_001973897.1| putative LuxR family two-component response regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190013974|emb|CAQ47614.1| putative LuxR family two-component response regulator
           [Stenotrophomonas maltophilia K279a]
          Length = 212

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F   +       ERE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 137 RARYRFHDEAPPTDTFGEREVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGT 196

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 197 RDRTRAVLKAITLRII 212


>gi|152997016|ref|YP_001341851.1| two component LuxR family transcriptional regulator [Marinomonas
           sp. MWYL1]
 gi|150837940|gb|ABR71916.1| two component transcriptional regulator, LuxR family [Marinomonas
           sp. MWYL1]
          Length = 217

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT ++   L    +G  +++IA +L +S  TV A++ +   KL+  NR QA+  A    
Sbjct: 150 ELTPQQYKVLCYLHEGLLNKQIAYELSISEATVKAHITAIFRKLEINNRTQAVLVASDLK 209

Query: 233 Y 233
            
Sbjct: 210 L 210


>gi|197284103|ref|YP_002149975.1| two-component response regulator [Proteus mirabilis HI4320]
 gi|227358025|ref|ZP_03842367.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|194681590|emb|CAR40570.1| two-component response regulator [Proteus mirabilis HI4320]
 gi|227161760|gb|EEI46792.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 210

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              C   +    +  +K   A  +LT RE     L   G   + IA +L LS  TV+ + 
Sbjct: 123 CYLCADAMKALRQTPEKE-DALHSLTPREREIFNLLVQGINVKAIAVQLNLSHKTVHVHR 181

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL+    I  +  A+    I
Sbjct: 182 ANILGKLNCETTIDLVHFALNNQLI 206


>gi|167566181|ref|ZP_02359097.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 205

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARNLTE 176
           +R G      + + S   ++     + A          +         +  +S    LT 
Sbjct: 82  IRFGASGY-LLKWCSPDGIVQAVRRVMAGRVHIDPSLDEARVASAAGGRTLASPVDKLTR 140

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   L+L  DG  + EIA  L +S  TV+ +      KL A N    I  A R+GY
Sbjct: 141 REKQILKLIVDGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 197


>gi|226195323|ref|ZP_03790912.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|254298568|ref|ZP_04966020.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           406e]
 gi|157808332|gb|EDO85502.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           406e]
 gi|225932525|gb|EEH28523.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pakistan 9]
          Length = 275

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++     +  L     G L   +    P  L       V+   
Sbjct: 59  LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 115

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 116 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 176 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 213


>gi|301060037|ref|ZP_07200911.1| putative Transcriptional regulatory protein FixJ [delta
           proteobacterium NaphS2]
 gi|300445916|gb|EFK09807.1| putative Transcriptional regulatory protein FixJ [delta
           proteobacterium NaphS2]
          Length = 208

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 30/192 (15%)

Query: 71  TYGDDFLFHFNSGLLP-------IIWQSIQ--EETVIESSGQLSVRLEGG---------L 112
              D  +      LL            ++   +    +  G L + +            L
Sbjct: 11  VDDDPSVRRALERLLRSTGHEARTFASALDFIDYEHPDVPGCLVLDVRMPKLNGLDLQDL 70

Query: 113 LPFAGIAFPV-------RLGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLEL 163
           L   G + PV        +            +FL    E   ++EA     +        
Sbjct: 71  LIKKGNSIPVIFITGHGTVPDSVRALKGGAVDFLQKPFEDGDLLEAVSRGIENHRHERRK 130

Query: 164 FKK---RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            K+     +    LT RE         G  +++IA  LG+S  T+  +      K+ A +
Sbjct: 131 QKEMKILRARLNTLTPREREVFGFVISGMLNKQIAYDLGISEKTIKVHRAKVMQKMGAGS 190

Query: 221 RIQAIAKAIRFG 232
               +  A + G
Sbjct: 191 LADLVRFAEKLG 202


>gi|237507769|ref|ZP_04520484.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
 gi|234999974|gb|EEP49398.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
          Length = 235

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+ A   P   +L          
Sbjct: 7   LSDADAAPSYARALQACVGSLQALARPTAT---VFYRID-ASGEPVDFELFGMTVAMHRA 62

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                  L     D        S    ++     + +E    S                 
Sbjct: 63  YVSRYRPL-----DPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 115

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 + +     +          +   L   +  +R + 
Sbjct: 116 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 175

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 176 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 230


>gi|227818570|ref|YP_002822541.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36958825|gb|AAQ87250.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234]
 gi|227337569|gb|ACP21788.1| transcriptional regulator, LuxR family [Sinorhizobium fredii
           NGR234]
          Length = 240

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTERETSC 181
            G   F  +           A  A  ++    + L     S +         LT ++   
Sbjct: 122 AGINGFVPKHAARDEFRAAFAAIARGEIHAPQMALEPGSPSLSDEAVARLGLLTRQQAKI 181

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LQL   G  +++IA +L ++  TV A++ +   KL    R+QA+  A   
Sbjct: 182 LQLVCAGLMNKQIAYELSIAETTVKAHVTAIMRKLGVQTRMQAVLFAQEA 231


>gi|73748854|ref|YP_308093.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660570|emb|CAI83177.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 247

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   L +   GYT++EI+  L  +  T+  Y+     KL+  NR  A   A 
Sbjct: 183 PQDVLSPRELEILIMVARGYTNKEISVNLDYAEITIKKYVKGIMTKLNVSNRTLAGIAAA 242

Query: 230 RFGYI 234
           +FG +
Sbjct: 243 KFGLV 247


>gi|147669614|ref|YP_001214432.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|146270562|gb|ABQ17554.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 247

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   L +   GYT++EI+  L  +  T+  Y+     KL+  NR  A   A 
Sbjct: 183 PQDVLSPRELEILIMVARGYTNKEISVNLDYAEITIKKYVKGIMTKLNVSNRTLAGIAAA 242

Query: 230 RFGYI 234
           +FG +
Sbjct: 243 KFGLV 247


>gi|325068789|ref|ZP_08127462.1| two component system response regulator [Actinomyces oris K20]
          Length = 251

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE + L L   G ++  I E+L ++  TV +++ +   K    NR++ +  A+  
Sbjct: 186 EALTVREDAVLALVCQGLSNASIGERLHVAESTVKSHVKTILGKTGCHNRVELVIYALTT 245

Query: 232 GYI 234
           G +
Sbjct: 246 GLV 248


>gi|315225545|ref|ZP_07867355.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
 gi|314944489|gb|EFS96528.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
          Length = 216

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 6/199 (3%)

Query: 29  KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD-DFLFHFNSGLLPI 87
           +A +FA++ ++    +    + +  +        ++    +    D + +   +  +   
Sbjct: 23  EAGSFAVFLLDRFGRYYYVTEYVENIDTP----QELDIEKLVHPDDLEVVRRIDKKVWEF 78

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
           + +++ EE  +       +R+         I     L F  + ++      L        
Sbjct: 79  L-ETLPEEEKLTYKYIYEMRVLDRGKYVRMIYQMRILAFKDDNFLGMGIIDLAPEQSANT 137

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                    +TD +  F   S+    LT RE   L LA +G  S+EI+EKL +S+HTVN 
Sbjct: 138 SVRFQIKNCLTDEIVPFAIESATDTLLTPREREILALAKEGMFSKEISEKLNISIHTVNR 197

Query: 208 YLGSATVKLDAVNRIQAIA 226
           +  +   KL   N I+AI 
Sbjct: 198 HRQNILEKLQVDNMIEAIR 216


>gi|311900673|dbj|BAJ33081.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 194

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R +T+RE   L L G G ++ EIAE L ++  TV AY+     KLDA +R+  +  A   
Sbjct: 127 RGITDREREVLTLIGRGLSNAEIAEALFITAATVKAYVTRLLAKLDARDRVHLVITAYEH 186

Query: 232 GYI 234
           G +
Sbjct: 187 GLV 189


>gi|300786261|ref|YP_003766552.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795775|gb|ADJ46150.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + A   +++A      +     E           L+ +E   L L  +G T+ +IAE+
Sbjct: 118 RTVAAGGSLLDATLTASVMNKLRGENVAAPDPRYEQLSPQERRVLDLVAEGLTNRQIAER 177

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L L+  TV  Y+ S   KL    R  A   
Sbjct: 178 LFLAEKTVKNYVSSVLHKLGVERRTSAAVY 207


>gi|258623282|ref|ZP_05718288.1| Glycerol metabolism activator [Vibrio mimicus VM573]
 gi|262171536|ref|ZP_06039214.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus
           MB-451]
 gi|258584414|gb|EEW09157.1| Glycerol metabolism activator [Vibrio mimicus VM573]
 gi|261892612|gb|EEY38598.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus
           MB-451]
          Length = 222

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 16/124 (12%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------- 169
           +   +  G           + +  A   I+        +  D L    K S         
Sbjct: 91  VLQTLAYGAVGYVAKSCARQQMGEAFAQILRGD---VYLPADILRENVKTSPNHSLRNQA 147

Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                  + LT ++   LQ    G  +++IA  L +S  TV +++ +   KL   NRIQA
Sbjct: 148 GFSAETLQTLTRKQLQVLQFMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQA 207

Query: 225 IAKA 228
           +  A
Sbjct: 208 VLGA 211


>gi|253998833|ref|YP_003050896.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200921|ref|YP_004039579.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985512|gb|ACT50369.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312440237|gb|ADQ84343.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 210

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 140 MLANEVIIEAHGACY----QVITDFLELFKKRSS------AARNLTERETSCLQLAGDGY 189
               E II A  A       + ++  EL     S          L++RE         G 
Sbjct: 105 DAEPEEIISAIRAIANGKRYISSELAELMTNELSHPTEKQLHETLSDREFQVFFKLAGGL 164

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ EIA++L +SV TV+ Y      K+           AI+ G I
Sbjct: 165 SATEIADELCISVKTVSTYRTRILEKMSLKTNADLTYYAIKNGLI 209


>gi|86748488|ref|YP_484984.1| response regulator FixJ [Rhodopseudomonas palustris HaA2]
 gi|86571516|gb|ABD06073.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 205

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            + +   +  ++L+ RE   +     G +++ IA +  +S  T+  Y  +   K+ A + 
Sbjct: 131 AVSQDIVARIQSLSPRERQVMDGLIAGMSNKVIAREFDISPRTIEVYRANVMTKMQAGSL 190

Query: 222 IQAIAKAIRFGYI 234
            + +  A+R G I
Sbjct: 191 SELVRMAMRGGVI 203


>gi|50121806|ref|YP_050973.1| response regulator [Pectobacterium atrosepticum SCRI1043]
 gi|49612332|emb|CAG75782.1| two-component response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 218

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQTDAPLECLSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AI+ G 
Sbjct: 193 INGDVELTHLAIKHGL 208


>gi|120597637|ref|YP_962211.1| response regulator receiver protein [Shewanella sp. W3-18-1]
 gi|146294224|ref|YP_001184648.1| response regulator receiver protein [Shewanella putrefaciens CN-32]
 gi|120557730|gb|ABM23657.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1]
 gi|145565914|gb|ABP76849.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           CN-32]
          Length = 209

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
              ++ +      Q +    E+     +  + LT RE + +Q    G  ++EIA +L +S
Sbjct: 112 DRTLLSKMFRRVVQKLEGNNEMPSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCIS 171

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            HTV A++ S   K  + NR++ +  A
Sbjct: 172 EHTVKAHISSIFRKTQSRNRVELLRWA 198


>gi|322831866|ref|YP_004211893.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167067|gb|ADW72766.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602]
          Length = 216

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            LT RE   L     G ++ EIA  L +S +TV  +L +   K+   NR QA + A
Sbjct: 155 GLTHREKEILNKLRVGASNTEIARLLFISENTVKTHLYNLFRKISVKNRTQAASWA 210


>gi|290955399|ref|YP_003486581.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644925|emb|CBG68011.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 245

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                +   LTERE   ++L   G+T+ EIA  + +S+ TV  +LGS  +KL A NR++ 
Sbjct: 172 PGAPRSQEALTERELDVVRLVALGHTNAEIAASMFVSLSTVKTHLGSIQLKLAARNRVEI 231

Query: 225 IAKAIRFG 232
            A A R G
Sbjct: 232 AAWAWRTG 239


>gi|115526773|ref|YP_783684.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115520720|gb|ABJ08704.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 223

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|318042460|ref|ZP_07974416.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 201

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 90  QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEV 145
            +I      +    + + L         +A  +         V+ + +        A + 
Sbjct: 48  DAIAFCRSDDPPDLVILDLALPDGDGLAVAQALAEHHPNPQVVVLSGQASSFVCPAALQP 107

Query: 146 IIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           +I               + ++     A  LT R+     L G G T++EIA+   LS+ T
Sbjct: 108 LIAGVVDKTSAFHQLTSVLERCLPQSAEPLTPRQQEIYGLIGQGLTNKEIAKTTNLSIAT 167

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           V  +  +   KL      + + +A   G
Sbjct: 168 VETHRKAIAQKLGVSG-AELVRQASLLG 194


>gi|317407768|gb|EFV87695.1| hypothetical protein HMPREF0005_03216 [Achromobacter xylosoxidans
           C54]
          Length = 223

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT RE   L L   G T  E+A +L +S  TV  +  +   KL+  N  + +A A+R 
Sbjct: 161 ESLTRREQQILALIATGATGTEVARRLYISPLTVRKHRENLMRKLEVHNTAELVAYAVRL 220

Query: 232 GY 233
           G 
Sbjct: 221 GI 222


>gi|294625489|ref|ZP_06704118.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665263|ref|ZP_06730559.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600210|gb|EFF44318.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604978|gb|EFF48333.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 210

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F+ + +     +ERE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 135 RARYQFRDQQAPRETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 195 RDRTRAVLKAITLRVI 210


>gi|302557670|ref|ZP_07310012.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475288|gb|EFL38381.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
          Length = 222

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 37/84 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               + + +   + +  ++ +  L+ R    +Q    G T++EIA +L +S+ TV ++L 
Sbjct: 134 LRLLKHLNESQAMPRGGAARSSELSGRALEVVQAIARGRTNQEIAAELFISLSTVKSHLS 193

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL   NR +    A     +
Sbjct: 194 GIQTKLGVRNRTEIAVWAWENRVV 217


>gi|170726344|ref|YP_001760370.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169811691|gb|ACA86275.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 205

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            LT+R+   L     G ++ EI+  L +S+ TV  +L     +L   NR+QA+
Sbjct: 129 ELTQRQHEILHWVKLGKSNWEISTILSISIDTVKFHLRGIYKRLGVSNRVQAV 181


>gi|84684208|ref|ZP_01012110.1| two-component response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667961|gb|EAQ14429.1| two-component response regulator [Rhodobacterales bacterium
           HTCC2654]
          Length = 215

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR---NLTER 177
           L    +GY+        +  ++   +H        V    +  F +    A     LT+R
Sbjct: 94  LSAGADGYLQKDQTQDQMVAQLRQISHGIPALSPAVARRIMGHFSRTGPVANDDGKLTDR 153

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ET  L L   G  + E+A +LGL+  TV  Y+ +   KL   +R +A   A R G 
Sbjct: 154 ETDVLALISRGLRNAEVARELGLAESTVAGYIKTIYRKLGISSRAEAAWHATRLGL 209


>gi|284045055|ref|YP_003395395.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949276|gb|ADB52020.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 364

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++R+     L+ RET  L+  G G   ++IA +L LS  TV  +L +   KL AV+R QA
Sbjct: 295 RQRALDPCPLSARETEVLKRLGQGKVYKQIAHELELSTSTVRTHLHNIYGKLGAVDRAQA 354

Query: 225 IAKAIRFGYI 234
           +  A   G+I
Sbjct: 355 VLIATERGWI 364


>gi|240169124|ref|ZP_04747783.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
            12478]
          Length = 1092

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 172  RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +LT  E   + L G+G ++++IA +L +S  TV  +L     KLD  +R+Q   +A+R 
Sbjct: 1032 ESLTPAEREVVSLVGEGLSNKDIAARLFVSPRTVQTHLTHVYTKLDLNSRVQLAQEAVRH 1091


>gi|239813946|ref|YP_002942856.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239800523|gb|ACS17590.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 247

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G++  EIA   GLSVHTV  ++ +   KL   ++ +A+ +A R G 
Sbjct: 183 LSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFEATRLGL 242

Query: 234 I 234
           +
Sbjct: 243 L 243


>gi|302540939|ref|ZP_07293281.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302458557|gb|EFL21650.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces himastatinicus ATCC 53653]
          Length = 214

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 104 LSVRLEGGLLPFAGIA-FPVRLGFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVIT 158
             +         AG + F ++    +          T + ++             +QV+ 
Sbjct: 84  FDLDAYAYEGLRAGASGFLLKDARPEEIVAGIHAVATGDAVVAPRLTRRLLDAYAHQVLA 143

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                 +        L++RE   L   G G+T+ EIAE+L L+  TV  ++G    K+ A
Sbjct: 144 PPGTPAED--PRLHTLSDREREVLVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGA 201

Query: 219 VNRIQAIAKAIRF 231
            +RIQA+   +R 
Sbjct: 202 RDRIQAVIMGVRH 214


>gi|296136746|ref|YP_003643988.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|294340903|emb|CAZ89298.1| Transcriptional regulatory protein fixJ [Thiomonas sp. 3As]
 gi|295796868|gb|ADG31658.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 204

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 12/134 (8%)

Query: 108 LEGGLLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLAN----------EVIIEAHGACYQ 155
                L   G + P+    G       + T +   +              +++      +
Sbjct: 67  ELQDELLHRGCSMPLVFITGHGDVPMAVDTMKKGAIDFIEKPFNEVVLRDLVDRMLQKAR 126

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +  D  +    R +    LT RE+  L+    G  +++IA+ L +S+ TV A+  +   K
Sbjct: 127 LTADQQQAEASRGALLGRLTARESQVLERIVAGRLNKQIADDLNISIKTVEAHRANIMEK 186

Query: 216 LDAVNRIQAIAKAI 229
           L+       +  A+
Sbjct: 187 LNVSTVADLLKIAL 200


>gi|239983739|ref|ZP_04706263.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291455547|ref|ZP_06594937.1| two component transcriptional regulator [Streptomyces albus J1074]
 gi|291358496|gb|EFE85398.1| two component transcriptional regulator [Streptomyces albus J1074]
          Length = 225

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++           +    LT RET   +L   G+T+ EI   L +S  T   ++ +   
Sbjct: 140 RLLQTLTPSAPAPPTRLTPLTARETEIARLVAQGHTNAEIGMTLSISPGTAKTHIANIQT 199

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL A NR+   A     G 
Sbjct: 200 KLKARNRVGIAAWTWENGL 218


>gi|212715195|ref|ZP_03323323.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661876|gb|EEB22451.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM
           16992]
          Length = 218

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 13/178 (7%)

Query: 65  PNILIETYGDDFLFHFNS-----GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
             +   T GD+ +           LL +       +          +     +L     +
Sbjct: 38  YVVWTATSGDEAIERCQDANSNVSLLILDMSMEGLQGPATCRRLRLMGKHMPILGATSFS 97

Query: 120 F-PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAAR 172
               R    + G      +        II       +V+  F           + +  A 
Sbjct: 98  IKSYRDKLVEAGAQGLVGKENADQLAQII-MRMCNGEVMEGFETPALANLRISREAETAP 156

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +LT RE   + L  +G    EIAE+L +S  T+  ++ S   KL+     QA+A  +R
Sbjct: 157 SLTVREEQIISLCAEGMLDREIAERLRISEATIRKHIQSILRKLNCKTSRQAVALWVR 214


>gi|134101534|ref|YP_001107195.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008185|ref|ZP_06566158.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914157|emb|CAM04270.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 237

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              GY+        L   V   A         V         +   +A  L+ RE    +
Sbjct: 96  GAAGYLTRGHSIAELVRTVRSAAAGEFRCSPCVAAALSPGAAQSIVSAGLLSHREAEIAE 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           L   G +++EIA +L +++ TV  ++ +   KL    R +A A A 
Sbjct: 156 LLEQGLSNQEIARRLCIALATVKNHVHNILDKLGVRGRAEAAAWAR 201


>gi|120402652|ref|YP_952481.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955470|gb|ABM12475.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 219

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFT 135
            P+    +       +  Q +  +         +   +               +GYV+ +
Sbjct: 51  TPVDIAILDIAMPRMTGLQAAREISRKYPHVRILILSMHDNEQYFFEALRAGASGYVLKS 110

Query: 136 SEFLMLANEVIIEAHG-------ACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGD 187
              L L         G       A   +I D+L             +T RE   L+L  +
Sbjct: 111 VADLDLLKACRATLRGEPFVYPGAVTALIQDYLNRARHGDDLPGTIVTSREEEVLKLIAE 170

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           GY++ EIA  LG+S  TV+ +  +   KL   +R+     AIR G I
Sbjct: 171 GYSTREIAGTLGISAKTVDRHRANLLAKLGLRDRLALTRYAIRVGLI 217


>gi|74316369|ref|YP_314109.1| LuxR family transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055864|gb|AAZ96304.1| Transcriptional Regulator, LuxR family [Thiobacillus denitrificans
           ATCC 25259]
          Length = 258

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 10/146 (6%)

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA------ 149
              +   +  + LE   L F G+    R+     GY  F+   +     + +        
Sbjct: 107 DDPDGWHRRLLDLELKNLAFHGLC---RVDGQMWGYASFSRLRVPFDARLALFMELLLPH 163

Query: 150 -HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 +V+ +           A  +T RE   L    DG T+EEIA  LGLS+ TV  +
Sbjct: 164 LLVTLARVLANEARTRSLGDRHAGLITAREAEVLAWVRDGKTNEEIAAILGLSMLTVKNH 223

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  A  KL    R QA+A+AI  G++
Sbjct: 224 LRHAMQKLVVRTRGQAVARAIALGFL 249


>gi|119386432|ref|YP_917487.1| response regulator receiver protein [Paracoccus denitrificans
           PD1222]
 gi|119377027|gb|ABL71791.1| transcriptional regulator, LuxR family [Paracoccus denitrificans
           PD1222]
          Length = 290

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 9/186 (4%)

Query: 52  CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI---QEETVIESSGQLSVRL 108
             L +Y          L                    W  +   +    +    + ++ +
Sbjct: 55  VLLSSYSPYLMQELASLDLFESAPMHRWIIQNRGSESWDWMQRCRLAGRLSPREERAMDV 114

Query: 109 EGGLLPFAGIAFPVRLGFHKN---GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
                  AG A  +     +      V  T        + +   HG     ++  + L  
Sbjct: 115 FARYGHVAGYAVGMGDDVERIRAGVIVSGTIGMRQDRLDALWAQHGRLVGALSGVMHLRI 174

Query: 166 KRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                A     LT R+   L+    G+T++EIA+ L ++  TV  +L  A   L A    
Sbjct: 175 STLPHAERECVLTLRQREVLECISAGHTTQEIAQILEVTPATVEKHLRLARRALGAKTTA 234

Query: 223 QAIAKA 228
           QAI  A
Sbjct: 235 QAILLA 240


>gi|332159933|ref|YP_004296510.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607515|emb|CBY29013.1| secretion system regulator of DegU/UvrY/BvgA type [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664163|gb|ADZ40807.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862444|emb|CBX72602.1| hypothetical protein YEW_HP33970 [Yersinia enterocolitica W22703]
          Length = 210

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +G  +  IA +L +S  TV  +  +   KLD     + I  + R G 
Sbjct: 149 LTPRERQILKLITEGSCNRIIASQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|323345593|ref|ZP_08085816.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323093707|gb|EFZ36285.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 318

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIA  L +S +TV  +  +   KL   +       AI  
Sbjct: 249 ETLSDREKDVIVSLVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 308

Query: 232 GYI 234
             I
Sbjct: 309 NLI 311


>gi|213583489|ref|ZP_03365315.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 84

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 157 ITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           + ++L   ++  +       LTERE   L     G ++++IA  L +S  TV  ++ +  
Sbjct: 3   VNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLL 62

Query: 214 VKLDAVNRIQAIAK 227
            KL+  +R+ A   
Sbjct: 63  RKLNVRSRVAATIL 76


>gi|149927753|ref|ZP_01916005.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Limnobacter sp. MED105]
 gi|149823579|gb|EDM82809.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Limnobacter sp. MED105]
          Length = 223

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   +     G +++EIA KL LS  T+  +L     +++  NR QA++ 
Sbjct: 156 QLTHKQQQVMHFLASGLSNKEIARKLDLSPETIKTHLREIFTRMNVKNRTQAVSL 210


>gi|326774525|ref|ZP_08233790.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326654858|gb|EGE39704.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 225

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L   V   A G           L  + R  A   LT RE   L  
Sbjct: 105 AGAIGYLLKDATRDQLVEAVHSAARGETVLAPRVAARLVARMRRPAPVTLTPREVDVLGA 164

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG ++ EI  +L ++  TV  +L     KLD  +R  A+ +A+    +
Sbjct: 165 VADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214


>gi|291006472|ref|ZP_06564445.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 11/154 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML-----ANEVI 146
           +        + ++   L         + F            +       L     A +++
Sbjct: 57  LDLRLPDAMASEIVAPLREAAPAARILVFTAYRDHAALQATLDAGVDGCLLKDAGATDLV 116

Query: 147 IEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGL 200
              H A + +      + ++ +   R+      LT+RE   L+ A  G T+ EIA++LGL
Sbjct: 117 SAVHQAAHGIPIFDPRVGERAAPRMRSRLHDTGLTQREYDVLRHAAAGRTNPEIADQLGL 176

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + HTV  YL +A  KL+A NRI+ IAKA + G +
Sbjct: 177 TRHTVTGYLRNAMRKLNARNRIELIAKAAQSGLL 210


>gi|229824282|ref|ZP_04450351.1| hypothetical protein GCWU000282_01587 [Catonella morbi ATCC 51271]
 gi|229786255|gb|EEP22369.1| hypothetical protein GCWU000282_01587 [Catonella morbi ATCC 51271]
          Length = 199

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL  +  +    LT +E   +    +G +++E+A++L LS  TV  Y+ +   KL A NR
Sbjct: 127 ELVDRLFTHHNPLTPQERQLMAGVREGLSNKELAQELHLSEGTVRNYMSTVLQKLSAKNR 186

Query: 222 IQAIAKAIRFGY 233
             AI      G+
Sbjct: 187 ADAIRICQENGW 198


>gi|254282747|ref|ZP_04957715.1| monoamine regulon transcriptional regulator [gamma proteobacterium
           NOR51-B]
 gi|219678950|gb|EED35299.1| monoamine regulon transcriptional regulator [gamma proteobacterium
           NOR51-B]
          Length = 239

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 9/146 (6%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-----TSEFLMLANEV 145
                    S                 +   +R G      +          F       
Sbjct: 80  EDVHRHWDPSDDSYFREFMIPQGVHYEMEVFLRDGSQIVAGISLLRSKDIGPFSSEDRCR 139

Query: 146 IIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           +   H      +   +               NL+ R+   ++L  +G ++++++  LG+S
Sbjct: 140 LESVHDYIQYALNSHILPKKDSETDLLVRQYNLSPRQIEVVRLLREGASNKKLSAHLGIS 199

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAK 227
           + TV  ++     K+   +R   ++K
Sbjct: 200 LPTVKTHISQIFEKVGVRSRTDLLSK 225


>gi|116073982|ref|ZP_01471244.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069287|gb|EAU75039.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 249

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 42/104 (40%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +   + F       + +       ++T   +      +   + T RE S LQL  +G  
Sbjct: 145 LLTEAARFADADVGQMAKQISEIRSMLTGSADAAASPDTPQLSFTPREASVLQLVAEGLM 204

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++EIA +L  S+  V  Y+    +K    +R + +  A++   +
Sbjct: 205 NKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRFALQHHLV 248


>gi|111220151|ref|YP_710945.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111147683|emb|CAJ59339.1| Putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 213

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           VI  F       +     LT RE   + L G G +++EIA +L +S  T   ++    VK
Sbjct: 135 VIDTFARRPAVTAPDLSGLTVREREVMSLVGRGMSNDEIAARLVISPATARTHVSRVMVK 194

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L A +R Q    A + G +
Sbjct: 195 LAARDRAQLAVLANQAGLV 213


>gi|78184554|ref|YP_376989.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168848|gb|ABB25945.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 228

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           E  + A    +   +  L   +    +   LT RE   L     G T +EIAE L +S  
Sbjct: 136 EAAVLAVMGHHSYRSPSLRGRELPYLSCPRLTPREYEVLDRLARGMTDKEIAEALVVSEQ 195

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T   Y       L+  NR+QA+ K +R G +
Sbjct: 196 TSRTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226


>gi|333028632|ref|ZP_08456696.1| putative LuxR family DNA-binding response regulator [Streptomyces
           sp. Tu6071]
 gi|332748484|gb|EGJ78925.1| putative LuxR family DNA-binding response regulator [Streptomyces
           sp. Tu6071]
          Length = 212

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            +I ++L+  ++    A    LT RE   L+L  +G++S++IA  L +SV TV  +  + 
Sbjct: 129 ALIRNYLDQARRGEEPAGGSTLTPREEEILKLVAEGHSSKDIAALLVISVKTVERHRANT 188

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R++    AIR G +
Sbjct: 189 LHKLGLKDRLELTRYAIRAGLV 210


>gi|330837581|ref|YP_004412222.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
 gi|329749484|gb|AEC02840.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
          Length = 528

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 156 VITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           +I     + +  ++ A++     L+ RE    +   +G ++ EIA++L +S +TV A+  
Sbjct: 427 LIQARRMMDEANNALAKSVVLYNLSPREQQVAKFIMEGKSNSEIAKELFISANTVKAHTS 486

Query: 211 SATVKLDAVNRIQA 224
               K  A +R + 
Sbjct: 487 HVYEKTGATHRSEL 500


>gi|312196703|ref|YP_004016764.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228039|gb|ADP80894.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 225

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 2/106 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              V    +   L             Q         +   + A N+TERE   L L  +G
Sbjct: 117 VHAVHLVRDGGALLAPSATRL-LIDAQAHAPARR-QETSMALAGNVTEREREVLVLVAEG 174

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             + +IA++L +S  TV ++L S   K +   R+Q +  A   G +
Sbjct: 175 LANADIADRLSISPLTVKSHLSSLLAKHNLATRVQLVVLAYESGLV 220


>gi|269959786|ref|ZP_06174165.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835540|gb|EEZ89620.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 202

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L     +++    LT RE    QL   G   + IA +LGLS  TV+ +  +A  KL   N
Sbjct: 130 LATPSDKAATLTQLTRRENEVCQLLARGLDVKSIATELGLSHKTVHVHRANAMDKLGVKN 189

Query: 221 RIQAIAK 227
            ++    
Sbjct: 190 NVELAKL 196


>gi|3868876|dbj|BAA34262.1| response regulator [Rhodococcus erythropolis]
          Length = 209

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            EV+        +     + + ++R       L+ RE   +++   G T+ E+AE+L +S
Sbjct: 116 REVMAGDDFVSLRAAAPGVGVRERRKDTDIDALSARELEVMRMVAAGLTTSEVAERLTVS 175

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV ++  S   KL    R +    A+  G +
Sbjct: 176 PRTVESHRASIQRKLHVRTRAEMARIALDEGLL 208


>gi|326388178|ref|ZP_08209781.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207344|gb|EGD58158.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 208

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 14/152 (9%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +       +   +   +         I     L   +    +            + + ++
Sbjct: 52  LDVNMPGMNGIDVLDAVRKRGDHRPIILLTAELTDRQLMAAMRAGIEGIVLKDGSEDELL 111

Query: 148 EAHG--------ACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
           +A              ++   L   L  +       L+ RE    +L   G  + +I  +
Sbjct: 112 DALAQVSRGKKAIAPALLQRALDLSLHPETEGPLDRLSTRERRIARLVARGMRNRDIGAE 171

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           + +   TV  YL     KL+  NR +    AI
Sbjct: 172 MNIGEGTVKVYLHGIYQKLNIDNRTELALLAI 203


>gi|300788038|ref|YP_003768329.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797552|gb|ADJ47927.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 E ++        +        ++   A   LT+RE+  +     G T+ EIA+ 
Sbjct: 119 RAAANGEALVSPSVTVRLLARFTERARRRAQGAPDLLTDRESDVVLAVAQGRTNAEIADD 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S+ TV  +L +   KL+  NR +    A + G +
Sbjct: 179 LRVSLSTVKTHLTNVQRKLELRNRTEIAIWAWQRGLL 215


>gi|296139583|ref|YP_003646826.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027717|gb|ADG78487.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 213

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            VIT              +LT RE   L   G G ++ +IA +L +   TV  ++    +
Sbjct: 132 AVITSLPAPPTAVHPDLSSLTGRERDVLAGLGAGLSNYQIARRLEIGEATVKTHVSRVLM 191

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   +R+QA   A + G 
Sbjct: 192 KLGVQSRVQAAVIAAQSGL 210


>gi|163786374|ref|ZP_02180822.1| two component transcriptional regulator, LuxR family protein
           [Flavobacteriales bacterium ALC-1]
 gi|159878234|gb|EDP72290.1| two component transcriptional regulator, LuxR family protein
           [Flavobacteriales bacterium ALC-1]
          Length = 209

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 157 ITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +   L     R S +   + L+ RE   L+L   G  ++EIA++L ++  TV+ Y     
Sbjct: 129 MDKHLRYEDTRKSRSRMFKKLSTREVEVLKLLSIGRKNKEIAQELDINEKTVSTYKARLF 188

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KL+  N I  I +A     
Sbjct: 189 KKLNVTNIIDLIHQAKHHNL 208


>gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 282

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           T RE S L L   G  ++EIA +L  SV  V  Y+     K    +R + +  A++ G 
Sbjct: 222 TPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGL 280


>gi|94314242|ref|YP_587451.1| transcriptional regulator two component heavy metal regulatory
           response ZniR [Cupriavidus metallidurans CH34]
 gi|93358094|gb|ABF12182.1| transcriptional regulator two component heavy metal regulatory
           response ZniR [Cupriavidus metallidurans CH34]
          Length = 206

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++R+     L+ERE   L  +  G TS EIA  LGLS  TV+ ++  A  KL    R++A
Sbjct: 135 QQRTPQNVTLSEREIEALSWSARGKTSGEIATILGLSKRTVDFHIDRAREKLGVATRVEA 194

Query: 225 IAKAIRFGYI 234
           + +A   G+I
Sbjct: 195 VVRAATEGFI 204


>gi|262373728|ref|ZP_06067006.1| glycerol metabolism activator [Acinetobacter junii SH205]
 gi|262311481|gb|EEY92567.1| glycerol metabolism activator [Acinetobacter junii SH205]
          Length = 216

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                      +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 135 FDPRAADETALAERLQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 195 GVQNRTQAV 203


>gi|226953416|ref|ZP_03823880.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|226835847|gb|EEH68230.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
          Length = 217

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                      +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 135 FDPRAADETALAERLQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 195 GVQNRTQAV 203


>gi|144897377|emb|CAM74241.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 208

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 32/68 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R  A   LT R+   L +   G +++EIA  L L+  TV  ++ +    L   NR QA 
Sbjct: 141 GRDQARNVLTPRQRDVLAMLRQGKSNKEIARDLNLAEITVKLHVTAILRALGVENRTQAA 200

Query: 226 AKAIRFGY 233
             A + GY
Sbjct: 201 ILAAKIGY 208


>gi|332142526|ref|YP_004428264.1| DNA-binding response regulator, LuxR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552548|gb|AEA99266.1| DNA-binding response regulator, LuxR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 205

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+++E S L+LA +G  +++IA  L LS  TV  YL  A  KLDA NR+ A   A + G
Sbjct: 144 PLSKKEMSALKLASEGLKTQDIARSLFLSEGTVRNYLSEAISKLDATNRVDAARIAKQKG 203

Query: 233 YI 234
           ++
Sbjct: 204 WL 205


>gi|46202045|ref|ZP_00053874.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 211

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT R+   L +   G +++EIA  L L+  TV  ++ +    L   NR QA   A + G
Sbjct: 152 LTPRQRDVLGMLRQGKSNKEIARDLSLAEITVKLHVTAILRALGCENRTQAAILAAKMG 210


>gi|171057563|ref|YP_001789912.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775008|gb|ACB33147.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6]
          Length = 254

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 10/184 (5%)

Query: 58  DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117
           D               D +L +      P    ++    V+ +  +  V L       + 
Sbjct: 35  DARWCRRYLAAGCQNHDPWLVYATHHSEPTAASALD---VVATEHRQVVALIHEGGFVST 91

Query: 118 IAFPVRLGFHKN-------GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
           +  P   G  +        G           +    I A     ++   +    ++    
Sbjct: 92  LLVPAHSGLSQARTSLLCLGSETVDHFERRDSAGHRILARALAAELHEWWSARIRRELVE 151

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT  E S ++    G++S+ IA +L +S  ++++       KL  +NR QA    + 
Sbjct: 152 AAQLTPTELSLVRHQCAGHSSKRIASELHVSPASIDSRFQRLHAKLGVLNRRQAARLLVD 211

Query: 231 FGYI 234
            G I
Sbjct: 212 CGLI 215


>gi|167821522|ref|ZP_02453202.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
          Length = 74

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  +  LT +E   L+L G   +++EIA  + +   TV  +L +   KLDA +R  A+
Sbjct: 2   PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 61

Query: 226 AKAIRFGYI 234
            +A+  G +
Sbjct: 62  RRALVLGLL 70


>gi|152981499|ref|YP_001354599.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281576|gb|ABR89986.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 248

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L+L   G +S+EIA+ L LSV TV  +  +   KL   N ++    A+  G +
Sbjct: 189 TPREQQILKLVAAGKSSQEIADTLELSVFTVRKHKQNLMAKLSLHNAVELTRYAMHQGLL 248


>gi|108798589|ref|YP_638786.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119867689|ref|YP_937641.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|108769008|gb|ABG07730.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119693778|gb|ABL90851.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
          Length = 163

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFK-KRSSAARNLT 175
           L     G+V+  S    L   V   A            +V+  +       R+  + +LT
Sbjct: 42  LRAGVAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTARVLNTYRRAPDMPRALTSVDLT 101

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L+L G GY++ EIA +L +S  TV +++G   +KL+  +R  AI  +   G +
Sbjct: 102 TRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIV 160


>gi|120404927|ref|YP_954756.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957745|gb|ABM14750.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
          Length = 399

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
             V E           G          +     ++  V         A   + +A     
Sbjct: 250 RRVDEIDRDTVWAFAEGFGYAYERTVLLERMRRQHAEVRRALASADEAARALQDADLDLR 309

Query: 155 QV-----ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           ++           L +  +     LT RE   L+L   G T+++IA++L +S  TV +++
Sbjct: 310 KIEPVERSAAAQSLAEVHTRVLGMLTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHV 369

Query: 210 GSATVKLDAVNRIQAIAKAIRF 231
                KL A NR +A +  +R 
Sbjct: 370 KRVLRKLHATNRAEAASAYVRL 391


>gi|50119655|ref|YP_048822.1| virulence regulator [Pectobacterium atrosepticum SCRI1043]
 gi|49610181|emb|CAG73623.1| virulence regulator [Pectobacterium atrosepticum SCRI1043]
          Length = 116

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L ER+   LQL   G ++++I+  L +S  TV ++L S   +L+  NR QA  
Sbjct: 55  KLRERQHEVLQLIVSGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 108


>gi|150018604|ref|YP_001310858.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905069|gb|ABR35902.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 220

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +NLTERE    QL  DGYT+ +IAE L +S  TV  Y+ +   K +  +R     K
Sbjct: 159 KNLTEREIEICQLLSDGYTNSQIAEFLYISEGTVKNYISTIYDKTEIKDRTMLALK 214


>gi|300781785|ref|ZP_07091639.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533492|gb|EFK54553.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 199

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 6/166 (3%)

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
           GD  +         +    +  E    +  +L+  L G       +    R G+ +    
Sbjct: 36  GDGVVDAVREHN--VDVALLDIEMPGRTGLELAADLAGSPCKVVIVTTFGRPGYLRTALE 93

Query: 133 IFTSEFL--MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDG 188
              + F+      + + +A    +  +   D     +   +    LT RE    + A  G
Sbjct: 94  AGAAGFIVKDTPPDQLADAVRRAHAGMRVVDPQVAEESLFTPPSPLTAREVEVAREALTG 153

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              ++IA +L LS  TV  ++ +   K  A NR  A       G++
Sbjct: 154 AEIKQIAARLNLSTGTVRNHISAIMTKTGAPNRYAAARTCNDNGWL 199


>gi|315500413|ref|YP_004089216.1| regulatory protein luxr [Asticcacaulis excentricus CB 48]
 gi|315418425|gb|ADU15065.1| regulatory protein LuxR [Asticcacaulis excentricus CB 48]
          Length = 246

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 3/217 (1%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
            P + +++  +   +FA+  +          + +    +   +   +       + D   
Sbjct: 32  HPLMEILRQIVPFDSFAMSGLAFFG--LGVGRGVMLASDMPEEFIRLFLTEKLYHQDPMS 89

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
           +   +      W  +  + +     +   +LE      A  A     G  + G V F   
Sbjct: 90  YLMTAERHWGSWHDLGPDVLTGPGVERIRQLERRFDITARSAVGFFNGEQRFGGVTFCRS 149

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                +E           V  +  +   +  +    L++ E +CL+   DG     I + 
Sbjct: 150 TPFSDHEK-FILEMTTRVVHAELSDQLLRAMNQHLGLSDGELACLKHFADGLEVPAIHQV 208

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G +  T+  Y  SA  K+    R  A+A+A+R   I
Sbjct: 209 TGYTTDTIYTYAKSAAKKMGVRGRTHAVAEALRRKVI 245


>gi|254524756|ref|ZP_05136811.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
 gi|219722347|gb|EED40872.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
          Length = 200

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
               E + +A     Q I     +L     S A  LT+RE   L+LAG+G T+ EIAE+L
Sbjct: 105 DAPAENLADALRKVNQGIRAIDPQLALDAWSQADPLTDRERRVLRLAGEGRTASEIAEQL 164

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           GLS  TV  YL     KL   NRI+A   A + G++
Sbjct: 165 GLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|108801090|ref|YP_641287.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|108771509|gb|ABG10231.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
          Length = 220

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                      +   L    +RS     L+ +E   L L G+G T+++IA ++ L+  TV
Sbjct: 127 RSLLDNRAAAALMSKLRGDVERSDPLSGLSAQERVLLDLLGEGLTNKQIAARMFLAEKTV 186

Query: 206 NAYLGSATVKLDAVNRIQAIAK 227
             Y+     KL    R QA   
Sbjct: 187 KNYVSRLLAKLGMERRTQAAVF 208


>gi|33863139|ref|NP_894699.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9313]
 gi|33635056|emb|CAE21042.1| product possible regulatory protein, luxR family [Prochlorococcus
           marinus str. MIT 9313]
          Length = 74

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++LT RE   L+L  DG+T+ EI  ++ ++  T   ++ S   KL   NR  A A+ IR 
Sbjct: 11  KSLTPRERFVLRLVCDGFTNREIGHQMFIAETTARGHVNSILRKLGVRNRAAAAAEGIRR 70

Query: 232 GYI 234
            ++
Sbjct: 71  QWV 73


>gi|289705339|ref|ZP_06501735.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557854|gb|EFD51149.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 221

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + +  V  +   A             +  +    LTERE   ++    G ++ EIA  
Sbjct: 122 DAVFSAPVAADLVEAVTAAPEHAAPCPAEPLAPHERLTERELDVVRELAKGASNAEIAGA 181

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L L+  TV +++G    K    +R+Q + +A R G +
Sbjct: 182 LFLAEATVKSHIGKVLDKWQVRDRVQILIRAARAGLV 218


>gi|260466579|ref|ZP_05812767.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029585|gb|EEW30873.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 525

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 152 ACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           A   V++   +  ++        +T RE   L+L   G T++E A KL +S  T + ++ 
Sbjct: 435 AAEAVLSFAGQPSRRTPPRPLAGMTPREIEVLRLIAAGLTAKEAARKLDISPKTADHHIQ 494

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   K+    R  A   A+  G +
Sbjct: 495 SVYAKIGVTTRAAAALYAVEHGLV 518


>gi|291298491|ref|YP_003509769.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567711|gb|ADD40676.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 134

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 135 TSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           +     L+ +  +  HG     I  +  +    R++   NL+ERE   L     G ++ E
Sbjct: 33  SRRLEPLSIDGRMLLHGLAALGIDLEPPKPTPLRANLQHNLSEREHQVLLGIAGGKSNAE 92

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I  +L ++  T+  +   A  KL A +R  A+A A R   +
Sbjct: 93  IGRELYVTEDTIKTHARRAYRKLGARDRAHAVALAFRQNIL 133


>gi|256819971|ref|YP_003141250.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
 gi|256581554|gb|ACU92689.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
          Length = 218

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 1/151 (0%)

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +   +  +   +  ++ EE  +       +R+         I     L F  + ++   
Sbjct: 68  VVRRIDKKVWEFL-DTLPEEEKLTYKYIYEMRVLDRGKYVRMIYQMRILAFKDDNFLGMG 126

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              L                 +TD +  F   S+    LT RE   L LA +G  S+EI+
Sbjct: 127 IIDLAPEQSANTSVRFQIKNCLTDEIVPFAIESATNTLLTPREREILALAKEGMFSKEIS 186

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           EKL +SVHTVN +  +   KL   N I+AI 
Sbjct: 187 EKLNISVHTVNRHRQNILEKLQVGNIIEAIR 217


>gi|77463889|ref|YP_353393.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|332558762|ref|ZP_08413084.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77388307|gb|ABA79492.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
 gi|332276474|gb|EGJ21789.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 213

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            +   + I     +   +     +  + + +   +LTER+ +       G +++ IA +L
Sbjct: 112 RLATFDGIFLPTASLTALRGALPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGEL 171

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L   TV  ++ +   KL A NR +A  K
Sbjct: 172 NLCESTVKVHIRNIMKKLGAKNRTEAAFK 200


>gi|91976037|ref|YP_568696.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91682493|gb|ABE38795.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 221

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 152 ACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              QVI+   +   ++R++ A  L+ RE   ++L   G T++EIA  + +S  TV  Y+ 
Sbjct: 130 FATQVISALRDATIRRRAAMAVKLSIREEQIVRLLLKGKTNKEIAHAISISEKTVKHYMT 189

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
               KL   NR++ +  A R 
Sbjct: 190 ILMQKLQVRNRLEVVIAAQRL 210


>gi|303234262|ref|ZP_07320907.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302494626|gb|EFL54387.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 208

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            + +  LT RE   L+L   G  +++IAE+LG+ ++TV  ++     K +  +R Q   +
Sbjct: 138 MAKSTELTPREIEVLRLLTTGAGNDQIAEELGILLNTVKTHIQHMLDKTEFTSRTQLAIQ 197

Query: 228 AIRFGYI 234
           A   G++
Sbjct: 198 ARITGFV 204


>gi|167618566|ref|ZP_02387197.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
          Length = 279

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++   E +  L     G L        P  L       V+   
Sbjct: 63  LHALCQACAPTPVAALTDDASPEHAQALFN--AGVLGVIPRSTRP-HLIVRALEMVLLGG 119

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 120 HYVPPSALNLTEPITRARDGRVDAIVSQLPRRKRSPRSLLSPRQAQIMRFVHMGSTNKMI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|226227636|ref|YP_002761742.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090827|dbj|BAH39272.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 223

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAARNLTE 176
           +R+G H         E L  A   +          +   L   +       ++    LT 
Sbjct: 103 MRIGTHGYLLKDSAGEELRAAIRAVHAGGTFFSPAVVRRLTSTEVVSEGAPAAQLDLLTP 162

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L     G T++ IA +LG+S  TV A+  S   KL   +       A+  G I
Sbjct: 163 RERDVLAGVARGLTNKAIAAELGISRRTVEAHRESLMRKLQIHSVAGLTRFALETGII 220


>gi|253991254|ref|YP_003042610.1| two-component response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638302|emb|CAR66925.1| putative two-component response regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782704|emb|CAQ85869.1| putative two-component response regulator [Photorhabdus
           asymbiotica]
          Length = 211

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L +  +  +  LT RE   LQL  +G  +  IAE L +SV TV  +  +   KL 
Sbjct: 134 EAVHRLGEGTNDDSTLLTRRERQILQLISEGNGNRNIAEMLSISVKTVETHRLNMMRKLK 193

Query: 218 AVNRIQAIAKAIRFGYI 234
                + +  + + G I
Sbjct: 194 VHKVTELLKYSRKLGLI 210


>gi|162146990|ref|YP_001601451.1| two-component system regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544054|ref|YP_002276283.1| two component LuxR family transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785567|emb|CAP55138.1| putative two-component system regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531731|gb|ACI51668.1| two component transcriptional regulator, LuxR family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 201

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 6/148 (4%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152
             E    S   ++  +    LP   I                      L  +  +E   A
Sbjct: 54  DIEMPGPSGIDVARDIAAASLPTRTIIVTTFARPGYLARARTAGVRGYLLKDAPVEQLAA 113

Query: 153 CYQVITDFLEL------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             + +                 + A  LT RE   L+LA +G ++++IA +LGLS  TV 
Sbjct: 114 AIRTVATGGTFIPPDLMAAAWDAGADPLTARERDALRLAEEGLSNKDIARRLGLSPGTVR 173

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            YL +A  KL+A NRI+A   A   G++
Sbjct: 174 NYLSTAAGKLNAANRIEAGRIARANGWL 201


>gi|119493450|ref|ZP_01624119.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
 gi|119452694|gb|EAW33873.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
          Length = 215

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT  E   +QL   G  + E+A+ + +S  T+ +++ +   K    NR +    
Sbjct: 149 ARPGVELTPTEVRVVQLVAQGLANREVAKAMKVSQRTIESHVSNMLNKTGLHNRTELARW 208

Query: 228 AIR 230
           A+ 
Sbjct: 209 ALE 211


>gi|87119848|ref|ZP_01075744.1| two-component system regulatory protein [Marinomonas sp. MED121]
 gi|86164550|gb|EAQ65819.1| two-component system regulatory protein [Marinomonas sp. MED121]
          Length = 209

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+  E   L+L   GY++ EI+E +  S  T+   +     KL   +R +A+ KAI  
Sbjct: 147 DGLSSNEIQVLRLIAAGYSNNEISEIMFKSAGTIRNKVSFILAKLQVRDRTRAVIKAIEL 206

Query: 232 GYI 234
           G I
Sbjct: 207 GVI 209


>gi|300727173|ref|ZP_07060591.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
 gi|299775559|gb|EFI72151.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
          Length = 199

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L L   G+ ++EIAEKL + + TV  +  +   KL   +       A+  GY
Sbjct: 134 LSDREIEVLSLVAQGHINKEIAEKLNIGLTTVITHRKNIQEKLGMKSVSALTIYAVMHGY 193

Query: 234 I 234
           +
Sbjct: 194 V 194


>gi|258650587|ref|YP_003199743.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258553812|gb|ACV76754.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 938

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 138 FLMLANEVIIEAHGACYQ-VITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEI 194
              LA   + E               L + RS AA    LT+RE     L G G T+++I
Sbjct: 840 GGDLAGTALAEFERLAMPGPAAAARRLLEHRSPAAHGDGLTDREAEVAGLVGQGLTNKQI 899

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A +L LSV TV +++ +A  KL   +R +      R
Sbjct: 900 AAQLFLSVRTVESHVRNALAKLQLTSRTELALWVHR 935


>gi|126462723|ref|YP_001043837.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104387|gb|ABN77065.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 247

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            +   + I     +   +     +  + + +   +LTER+ +       G +++ IA +L
Sbjct: 146 RLATFDGIFLPTASLTALRGALPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGEL 205

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L   TV  ++ +   KL A NR +A  K
Sbjct: 206 NLCESTVKVHIRNIMKKLGAKNRTEAAFK 234


>gi|300857851|ref|YP_003782834.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685305|gb|ADK28227.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205581|gb|ADL09923.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330135|gb|ADL20329.1| Two component LuxR family transcriptional [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275816|gb|ADO25715.1| Two component LuxR family transcriptional [Corynebacterium
           pseudotuberculosis I19]
          Length = 225

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   L+L   GYT +EI  +L +SV TV  +  +   K    NR      A
Sbjct: 160 PIVDALTRRELEVLRLLARGYTYKEIGAQLFISVKTVETHASNILRKTQQSNRHALTRWA 219

Query: 229 IRFGY 233
                
Sbjct: 220 HSRDL 224


>gi|134096209|ref|YP_001101284.1| response regulatory protein [Herminiimonas arsenicoxydans]
 gi|133740112|emb|CAL63163.1| Response regulatory protein [Herminiimonas arsenicoxydans]
          Length = 238

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE + L L   G +  E+A +L LSV TV  ++ +   KL   +R  A+ +A R G 
Sbjct: 169 LTRREATILDLIARGDSYCEVARELALSVGTVQTHIKNIYDKLSVHSRGAAVYEAHRRGL 228

Query: 234 I 234
           +
Sbjct: 229 L 229


>gi|75674440|ref|YP_316861.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419310|gb|ABA03509.1| two component transcriptional regulator, LuxR family [Nitrobacter
           winogradskyi Nb-255]
          Length = 216

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 107 RLEGGLLPFAGIA-FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
           R+   +L  +G A   + +   K G + F       +++VIIE   A  +V  +     +
Sbjct: 80  RVAAPILVISGAADISMAVAAMKYGALDF--LEKPFSSDVIIERVRAAVKVWREARGSER 137

Query: 166 K---RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                      LT RE   L     G +++E   +LG+S  TV  +      KL A N  
Sbjct: 138 DGFANFPGRHLLTCREREVLSQVARGASNKEAGRRLGISPRTVEVHRARIMDKLGAKNTA 197

Query: 223 QAIAKAIRFG 232
             I      G
Sbjct: 198 DLIRIVFSEG 207


>gi|182412194|ref|YP_001817260.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839408|gb|ACB73660.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 214

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 124 LGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARN---LTERE 178
           L     GYV  T+ F      +  + E        +   +           +   ++ RE
Sbjct: 89  LSAGARGYVEKTASFSEFTAALNAVAEGQTYIGPAVARAVRRMAGHPERIDSKLDISTRE 148

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L+   +G +S+EIA++LGLSV TV  +  S T +    +  Q    A R G +
Sbjct: 149 RDVLRFVAEGLSSKEIAQRLGLSVRTVENHRASITRRTGLRSVAQLTLHAARLGLV 204


>gi|261820885|ref|YP_003258991.1| response regulator [Pectobacterium wasabiae WPP163]
 gi|2661730|emb|CAA64809.1| expA [Pectobacterium carotovorum]
 gi|261604898|gb|ACX87384.1| two component transcriptional regulator, LuxR family
           [Pectobacterium wasabiae WPP163]
          Length = 218

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+++L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQTDAPLECLSERELQIMLMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AI+ G 
Sbjct: 193 INGDVELTHLAIKHGL 208


>gi|326389101|ref|ZP_08210683.1| LuxR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206701|gb|EGD57536.1| LuxR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 196

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +     +  +        L +R+   L+    G  +++IA +L +S  TV  +  +    
Sbjct: 119 LHDQNRKRSESAREKVEALPKRQREILECIAAGKLNKQIAWELQISERTVKLHRAAVLKA 178

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L       AI  AI  G 
Sbjct: 179 LGVKTSADAIRMAIEAGL 196


>gi|294651876|ref|ZP_06729166.1| LuxR family DNA-binding response regulator [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822199|gb|EFF81112.1| LuxR family DNA-binding response regulator [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 217

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +             +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +  
Sbjct: 132 HASFDPRAADETALAERLQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIF 191

Query: 214 VKLDAVNRIQAI 225
            KL   NR QA+
Sbjct: 192 RKLGVQNRTQAV 203


>gi|255320308|ref|ZP_05361493.1| two component transcriptional regulator, LuxR family [Acinetobacter
           radioresistens SK82]
 gi|262380505|ref|ZP_06073659.1| response regulator [Acinetobacter radioresistens SH164]
 gi|255302747|gb|EET81979.1| two component transcriptional regulator, LuxR family [Acinetobacter
           radioresistens SK82]
 gi|262297951|gb|EEY85866.1| response regulator [Acinetobacter radioresistens SH164]
          Length = 216

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL   NR Q
Sbjct: 142 ETELAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQ 201

Query: 224 AIAKAIRF 231
           A+  AI+ 
Sbjct: 202 AV-LAIKA 208


>gi|194291803|ref|YP_002007710.1| response regulator, luxr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225707|emb|CAQ71653.1| putative Response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 220

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 109 EGGLLPFAGIA----FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
              +L  +G +     P  +     G++  +++   + + +     G  Y          
Sbjct: 87  RARILIVSGTSGLEIIPAEVRREIAGFLPKSADAHEIEDAIACCLAGGTYFSGEANAVAA 146

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +   AA  LT R+   L     G +++ IA  +GLS +TV  ++ +    L  V+R++A
Sbjct: 147 PQAPYAASTLTPRQLEVLHQLTLGRSNKVIAYHMGLSENTVRVHVAAILDHLGVVSRVEA 206

Query: 225 IAKAIRFGYI 234
           I +A R G +
Sbjct: 207 ILEAQRRGLV 216


>gi|197123248|ref|YP_002135199.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220918037|ref|YP_002493341.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196173097|gb|ACG74070.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
 gi|219955891|gb|ACL66275.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 215

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +V+          +R+     L++RE   LQL   G+T  ++A  LG++  TV  Y+
Sbjct: 129 RAAKVLLQEFRGDPPDQRAKDGPALSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYV 188

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                K+D   + +A   A+  G +
Sbjct: 189 KRIYEKMDVSTKAEAALLAVARGLV 213


>gi|134100725|ref|YP_001106386.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913348|emb|CAM03461.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 202

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 11/154 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML-----ANEVI 146
           +        + ++   L         + F            +       L     A +++
Sbjct: 49  LDLRLPDAMASEIVAPLREAAPAARILVFTAYRDHAALQATLDAGVDGCLLKDAGATDLV 108

Query: 147 IEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGL 200
              H A + +      + ++ +   R+      LT+RE   L+ A  G T+ EIA++LGL
Sbjct: 109 SAVHQAAHGIPIFDPRVGERAAPRMRSRLHDTGLTQREYDVLRHAAAGRTNPEIADQLGL 168

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + HTV  YL +A  KL+A NRI+ IAKA + G +
Sbjct: 169 TRHTVTGYLRNAMRKLNARNRIELIAKAAQSGLL 202


>gi|74317417|ref|YP_315157.1| transcriptional regulator NarL [Thiobacillus denitrificans ATCC
           25259]
 gi|74056912|gb|AAZ97352.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 219

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 16/155 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +       +  ++   ++   L    I   V          +           +  E ++
Sbjct: 58  LDLNMKDMNGVEVLKAIKDEGLDSRVIMLTVSDQAEDLIAALQAGADGYLLKDMEPEDLM 117

Query: 148 EAHGACY-----------QVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIA 195
           +                 Q++   L    + +S A   LTE+E   L    DG +++ IA
Sbjct: 118 QQLAEAARGKITISEGLTQLLVSSLREKTRPTSLADAGLTEQENRILDHLVDGKSNKLIA 177

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +G++  TV  ++     KL+  +R++A   A R
Sbjct: 178 RDMGIAEGTVKVHVKHLLKKLNLRSRVEAAVWADR 212


>gi|323128869|gb|ADX16299.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 270

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  A    
Sbjct: 209 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 268

Query: 233 YI 234
            +
Sbjct: 269 LL 270


>gi|313204967|ref|YP_004043624.1| transcriptional regulator [Paludibacter propionicigenes WB4]
 gi|312444283|gb|ADQ80639.1| transcriptional regulator [Paludibacter propionicigenes WB4]
          Length = 217

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT  E   L+    G T++EIA K  +SVHT+  +  +   K++  N  +A   A+R G 
Sbjct: 150 LTATEQEILKEMALGKTTKEIASKRHVSVHTIMTHRKNIFRKIEVNNVHEATKYAMRAGI 209

Query: 234 I 234
           +
Sbjct: 210 V 210


>gi|298245015|ref|ZP_06968821.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552496|gb|EFH86361.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 931

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L+L   G T+++IA +L +S+ T   ++ S   KL A NR+QA+A+A     +
Sbjct: 872 TRREEEVLRLLAQGATNQDIARQLVVSLGTAKKHVASILSKLGAENRLQAVARAHERSLL 931


>gi|296105249|ref|YP_003615395.1| hypothetical protein ECL_04922 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059708|gb|ADF64446.1| hypothetical protein ECL_04922 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 196

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 14/106 (13%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
            P      +   V+ +    M+       A  A +Q +               +L+ER+ 
Sbjct: 97  IPRNASPERFAAVLDSVSRGMVCFPGEWLAQQASHQALL--------------SLSERQR 142

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             L+L   G +++EI   L +S  TV A+L S   +LD  NR QA 
Sbjct: 143 EVLKLLAAGESNKEIGRTLNISAATVKAHLESLFRRLDVKNRTQAA 188


>gi|302550551|ref|ZP_07302893.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468169|gb|EFL31262.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN----LTE 176
           L     G+++  S+   L   V + A          +        +   A       LT 
Sbjct: 100 LRVGAAGFLLKRSDADALVQAVRLVARSDSLLFPAAVRTLATAHARAHPAPPAWVAKLTG 159

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+   DG T+ EIA ++ +   TV +++ +   K    +R QA+  A   G++
Sbjct: 160 REREVLRRMADGLTNAEIARRMEVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGFL 217


>gi|254788344|ref|YP_003075773.1| regulator in two-component regulatory system [Teredinibacter
           turnerae T7901]
 gi|237686243|gb|ACR13507.1| regulator in two-component regulatory system [Teredinibacter
           turnerae T7901]
          Length = 208

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 34/64 (53%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  ++    LT ++   L L  +G+ +++I  ++G++  TV A++ +   KL   NR Q
Sbjct: 141 ERDLAAKIATLTPQQYRVLCLLREGWLNKQIGFEMGVTEATVKAHITAIFRKLGISNRTQ 200

Query: 224 AIAK 227
           A+  
Sbjct: 201 AVIM 204


>gi|238799115|ref|ZP_04642570.1| Response regulator uvrY [Yersinia mollaretii ATCC 43969]
 gi|238717023|gb|EEQ08884.1| Response regulator uvrY [Yersinia mollaretii ATCC 43969]
          Length = 206

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 3/112 (2%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181
           G           + ++ A   +          I   + L +    A      L+ERE   
Sbjct: 85  GAGGYLSKGAAPQDVVAAIRAVHSGQRYIASDIAQQMALSQLEPPAETPFSCLSERELQI 144

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   G    EI+E+L LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 145 MLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 196


>gi|158422196|ref|YP_001523488.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158329085|dbj|BAF86570.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 223

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                S    LT ++   L +  +G  +++IA +LG+S  TV A++ +   KL   +R Q
Sbjct: 146 ADAIISRLATLTPQQVRVLMMLAEGRLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQ 205

Query: 224 AIA 226
           A+ 
Sbjct: 206 AVI 208


>gi|62391250|ref|YP_226652.1| LuxR family regulatory protein [Corynebacterium glutamicum ATCC
           13032]
 gi|21325179|dbj|BAB99801.1| DNA-binding HTH domains [Corynebacterium glutamicum ATCC 13032]
 gi|41326590|emb|CAF21072.1| Bacterial regulatory protein, LuxR family [Corynebacterium
           glutamicum ATCC 13032]
          Length = 895

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---------RSSAARNLTERETSC 181
            +    +      +    A           + L  +         RS  A  LT +E   
Sbjct: 782 ALRRQGQRRRADEQFARAASLFQDMGADAMVTLANRERRVGGLGQRSEQAGGLTPQEYEI 841

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +L   G+ + E+A++L LS  TV  +L     KL   NR++  
Sbjct: 842 ARLVSSGHANREVAQELFLSPKTVEYHLTRVYKKLGIRNRMELA 885


>gi|294102876|ref|YP_003554734.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617856|gb|ADE58010.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 229

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G+ ++EIA +L +S  TV  +      KL   +  +    A R 
Sbjct: 152 ELLTPREKEILLLLAQGFATKEIASQLSISRKTVETHKARTMEKLGLYSVAELARFAERE 211

Query: 232 G 232
           G
Sbjct: 212 G 212


>gi|253572201|ref|ZP_04849605.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251838381|gb|EES66468.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 200

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L L   G  ++EIA+KL +S+ TV  +  + T KL   +       A+  
Sbjct: 133 EILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMN 192

Query: 232 GYI 234
           GYI
Sbjct: 193 GYI 195


>gi|229822479|ref|YP_002884005.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568392|gb|ACQ82243.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 222

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +    ++    +T+RE   L     G +++EIA +L LS  T   Y+     KLDA +R 
Sbjct: 146 VDADATARLDRITDREREVLAAVARGLSNDEIAGELFLSPATARTYVSRLLTKLDARDRA 205

Query: 223 QAIAKAIRFGYI 234
           Q +  A   G +
Sbjct: 206 QLVVLAYEAGLV 217


>gi|182433997|ref|YP_001821716.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178462513|dbj|BAG17033.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L   V   A G           L  + R  A   LT RE   L  
Sbjct: 105 AGAIGYLLKDATRDQLVEAVHSAARGETVLAPRVAARLVARMRRPAPVTLTPREVDVLGA 164

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG ++ EI  +L ++  TV  +L     KLD  +R  A+ +A+    +
Sbjct: 165 VADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214


>gi|126434190|ref|YP_001069881.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|126233990|gb|ABN97390.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 162

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFK-KRSSAARNLT 175
           L     G+V+  S    L   V   A            +V+  +       R+  + +LT
Sbjct: 41  LRAGVAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTARVLNTYRRAPDMPRALTSVDLT 100

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L+L G GY++ EIA +L +S  TV +++G   +KL+  +R  AI  +   G +
Sbjct: 101 TRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIV 159


>gi|153005603|ref|YP_001379928.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029176|gb|ABS26944.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 215

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAG 186
                 T     + +           +V+   L        A     L++RE   LQL  
Sbjct: 106 FHAAELTRAVEDVLSGDAAPISPRAAKVLLSELRGDPPDQKAKDGPALSKRELEVLQLLV 165

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G+T  ++A+ LG++  TV  Y+     K+D   + +A   A+  G +
Sbjct: 166 HGHTYADVAQALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGLV 213


>gi|104781955|ref|YP_608453.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110942|emb|CAK15660.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 263

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 17/182 (9%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
            ++  +    +    D F       +   + +  +         +  ++     +    +
Sbjct: 68  PEAMALYLSGLYQL-DPFYQACQEHIGDGLHRLEEVAPDQFRQSEYYLKYFHDHVLEDEV 126

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKRSSAARN--- 173
            F ++LG      +   +          ++         ++    +   +R + A     
Sbjct: 127 QFILQLGEAGALSLSLGTRERFDTARHGLLTVICPWVLALMGQHWQSQAQRPAPAMASQV 186

Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                      L+ERE    +L   GY+S+ +AE+L +S  TV  +      KLD  ++ 
Sbjct: 187 RDAMSLFGAKVLSERELEIARLILRGYSSKAMAERLAISPETVKVHRRHLYAKLDISSQP 246

Query: 223 QA 224
           + 
Sbjct: 247 EL 248


>gi|29347818|ref|NP_811321.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298387982|ref|ZP_06997530.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 1_1_14]
 gi|29339719|gb|AAO77515.1| luxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298259248|gb|EFI02124.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 1_1_14]
          Length = 200

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L L   G  ++EIA+KL +S+ TV  +  + T KL   +       A+  
Sbjct: 133 EILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMN 192

Query: 232 GYI 234
           GYI
Sbjct: 193 GYI 195


>gi|329934840|ref|ZP_08284881.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305662|gb|EGG49518.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 209

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +R             +  +      +    A  QV+   L +    +     LT RE   
Sbjct: 98  LRRAMEAGAAGFLVKDGPVEELAAAVRRVLAGEQVVDPALAMAALSAGP-NPLTPRECDV 156

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+ A DG T  +IA +L LS  TV  YL S   K    NR +A+ +A   G++
Sbjct: 157 LRSAADGATVADIAAELHLSESTVRNYLSSVIGKTGTRNRTEALREARHHGWL 209


>gi|300859067|ref|YP_003784050.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686521|gb|ADK29443.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302331322|gb|ADL21516.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis 1002]
          Length = 208

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE    +L   G T++EIA +L +S+ TV  ++     +LD  NR++  A   R G
Sbjct: 145 PLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRVEIAAALWRSG 204


>gi|145296375|ref|YP_001139196.1| hypothetical protein cgR_2289 [Corynebacterium glutamicum R]
 gi|140846295|dbj|BAF55294.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 895

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---------RSSAARNLTERETSC 181
            +    +      +    A           + L  +         RS  A  LT +E   
Sbjct: 782 ALRRQGQRRRADEQFARAASLFQDMGADAMVTLANRERRVGGLGQRSEQAGGLTPQEYEI 841

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +L   G+ + E+A++L LS  TV  +L     KL   NR++  
Sbjct: 842 ARLVSSGHANREVAQELFLSPKTVEYHLTRVYKKLGIRNRMELA 885


>gi|124383175|ref|YP_001025881.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|254194028|ref|ZP_04900460.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254200975|ref|ZP_04907340.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254359059|ref|ZP_04975331.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|147748587|gb|EDK55662.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|148028246|gb|EDK86206.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|169650779|gb|EDS83472.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|261827167|gb|ABM99233.2| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
          Length = 264

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 32/66 (48%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S    LT RE   L+L  DG  + EIA  L +S  TV+ +      KL A N    I  
Sbjct: 191 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHW 250

Query: 228 AIRFGY 233
           A R+GY
Sbjct: 251 AYRYGY 256


>gi|22127903|ref|NP_671326.1| two-component system response regulator [Yersinia pestis KIM 10]
 gi|21961040|gb|AAM87577.1|AE014004_15 response regulator [Yersinia pestis KIM 10]
          Length = 220

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A   LT RE     L  +G    EIAE LGLS  TV+ +  +   KL   N ++   K
Sbjct: 159 AVDPLTRREREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 216


>gi|126453676|ref|YP_001065612.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106a]
 gi|134283901|ref|ZP_01770597.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           305]
 gi|167718883|ref|ZP_02402119.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167737890|ref|ZP_02410664.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167815073|ref|ZP_02446753.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167823489|ref|ZP_02454960.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167845041|ref|ZP_02470549.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167893583|ref|ZP_02480985.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167910266|ref|ZP_02497357.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|217419942|ref|ZP_03451448.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           576]
 gi|242316523|ref|ZP_04815539.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106b]
 gi|254181152|ref|ZP_04887749.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1655]
 gi|254190516|ref|ZP_04897023.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195131|ref|ZP_04901560.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           S13]
 gi|254257993|ref|ZP_04949047.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1710a]
 gi|126227318|gb|ABN90858.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106a]
 gi|134244690|gb|EBA44788.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           305]
 gi|157938191|gb|EDO93861.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651879|gb|EDS84572.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           S13]
 gi|184211690|gb|EDU08733.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1655]
 gi|217397246|gb|EEC37262.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           576]
 gi|242139762|gb|EES26164.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106b]
 gi|254216682|gb|EET06066.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1710a]
          Length = 279

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++     +  L     G L   +    P  L       V+   
Sbjct: 63  LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 119

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 120 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|326622251|gb|EGE28596.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 270

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  A    
Sbjct: 209 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 268

Query: 233 YI 234
            +
Sbjct: 269 LL 270


>gi|304383484|ref|ZP_07365946.1| transcriptional regulator [Prevotella marshii DSM 16973]
 gi|304335403|gb|EFM01671.1| transcriptional regulator [Prevotella marshii DSM 16973]
          Length = 212

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTERE 178
            V    +  G V+  S    +   ++          Q + + L      +     LT+ E
Sbjct: 90  SVITSGNHFGIVMKDSSLPEIREALLFALRGQRYICQRMAELLLTPVPSACGKDLLTKTE 149

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T  L+    G T+ EIA+K   S HTVN +  +   K+      +A   A+R G I
Sbjct: 150 TEILKDIALGMTTREIADKRYSSFHTVNTHRKNIFRKIAVNTAYEATKYALRAGLI 205


>gi|298373031|ref|ZP_06983021.1| transcriptional regulator, LuxR family [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298275935|gb|EFI17486.1| transcriptional regulator, LuxR family [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 188

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + SS    LT RE   L    +G T++EIA+ L LSVHT+  +  + + KL         
Sbjct: 118 QSSSPEEALTIREQEVLVRIVNGLTNKEIADNLNLSVHTITTHRRNISTKLQIHTVAGLT 177

Query: 226 AKAIRFGYI 234
             AI    I
Sbjct: 178 IYAISNKMI 186


>gi|212640627|ref|YP_002317147.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562107|gb|ACJ35162.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 206

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT+ E   L+L     T+E I+  L +S  TV  ++ +   KL   +R+ A+ KAI+ G
Sbjct: 143 SLTKMELVILKLIAQDKTNENISHSLNISRRTVEHHVSTIIKKLRVDSRVGAVVKAIKEG 202

Query: 233 YI 234
            I
Sbjct: 203 II 204


>gi|154494182|ref|ZP_02033502.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC
           43184]
 gi|154086044|gb|EDN85089.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC
           43184]
          Length = 192

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161
             L V      LP       +       G +  TS   + A++ +I           +  
Sbjct: 57  AALFVLYADFFLPRRSKTMVLIDETEGEGGLSATSHITIKASQEVIIEQLE-QLFTGENN 115

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +    +   + L+ RET  LQL   G T++EIA+KL +S++TV ++  + T KL     
Sbjct: 116 SISSDNN---KELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTV 172

Query: 222 IQAIAKAIRFGYI 234
                 AI  G I
Sbjct: 173 SGLTFYAIMNGII 185


>gi|159037922|ref|YP_001537175.1| ATP-dependent transcription regulator LuxR [Salinispora arenicola
           CNS-205]
 gi|157916757|gb|ABV98184.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Salinispora arenicola CNS-205]
          Length = 981

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
                  + A      V     +  K+  S   +LTE E    +L  +G T+++ A+ L 
Sbjct: 883 AEREAARVRAQLRGLGVWRRHWKQAKRPLSGWESLTETERKVAKLVANGLTNQQAADHLF 942

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S HTV  +L     KL   +R   I  
Sbjct: 943 ISPHTVGFHLRQIYRKLGIRSRSALIRY 970


>gi|297539450|ref|YP_003675219.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297258797|gb|ADI30642.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 275

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  S     L++RE+  +     G T+ EI   L +S  TV  +L     KLD +NR Q
Sbjct: 205 NESESEFIDILSDRESEIMLWVKMGKTNHEIGMILNISAFTVKKHLQRIFKKLDVLNRAQ 264

Query: 224 AIAK 227
           A  K
Sbjct: 265 AATK 268


>gi|227112458|ref|ZP_03826114.1| response regulator [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|227329599|ref|ZP_03833623.1| response regulator [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
 gi|253689045|ref|YP_003018235.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755623|gb|ACT13699.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|301069190|dbj|BAJ11974.1| response regulator ExpA [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 218

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+++L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQTDAPLECLSERELQIMLMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AI+ G 
Sbjct: 193 INGDVELTHLAIKHGL 208


>gi|209966948|ref|YP_002299863.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
 gi|209960414|gb|ACJ01051.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
          Length = 907

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 34/94 (36%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              L     I           +      +    A  L+ RE + +     G +++EIA  
Sbjct: 810 RDCLRRSREIGLDSLARAFAEELERTLARPRDEADTLSPRERAVVIELCRGASNKEIARA 869

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L ++ +TV  +L +   KL    R  AI  A R 
Sbjct: 870 LAMTENTVKFHLKNIFGKLGVDRRAAAIITARRL 903


>gi|167587172|ref|ZP_02379560.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Burkholderia ubonensis Bu]
          Length = 83

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                 R+  +  LT +E + L+L     +++EIA  L +   TV  +L +   KLDA +
Sbjct: 6   RSAAGPRAVPSVVLTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASS 65

Query: 221 RIQAIAKAIRFGYI 234
           R  A+ +A+  G +
Sbjct: 66  RKHAVRRALVLGLL 79


>gi|167566149|ref|ZP_02359065.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167575074|ref|ZP_02367948.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 215

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 3/119 (2%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL---FKKRSSAARNLT 175
               R G         ++  L+ A   +          + + L L    + R+   + L+
Sbjct: 91  VQACRAGASGFVTKSDSNSELIAAIRKVALGGVYVSAAVAERLALSVHEQDRALPHQRLS 150

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   +     G    +IA  L +S  TV+ Y      K+   +    +  AIR   I
Sbjct: 151 GREFDVMCRLASGQPVRDIARTLYVSAKTVSTYRTHICEKMGVPHDAALVRYAIRHKLI 209


>gi|17549798|ref|NP_523138.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
 gi|17432053|emb|CAD18730.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 252

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 13/209 (6%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             ++  +  R+ A                     +Y  +                +  + 
Sbjct: 28  EFVRPVVGHRHLA--CGYGRTTSSGVAMDYVVTVDYPNEHLLAIRNTAGGIDTPIMRRWL 85

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
           +   P+ +         E +    +            A  +    +  G          +
Sbjct: 86  ATRRPVYF---DAAAPWEGTDPAWLEKFVKHGLRNCAADAMFDEVNCVGTYFSFHALPSV 142

Query: 142 A--------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                     ++    H A  + + +     +K S A   L+ERE     L G G ++ E
Sbjct: 143 EQGCLDAMLRDLTPVLHSALLRAVANVESDLQKASEALATLSEREREVALLIGQGKSNAE 202

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           IA  +  S +TV  YL S   K    NR+
Sbjct: 203 IALLVCKSENTVKHYLSSIMDKTGCENRV 231


>gi|326626887|gb|EGE33230.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 270

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  A    
Sbjct: 209 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 268

Query: 233 YI 234
            +
Sbjct: 269 LL 270


>gi|302879267|ref|YP_003847831.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302582056|gb|ADL56067.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 211

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                S    L++RE   L+L G G T  E+A+ L LSV TV+ Y      K++  N  +
Sbjct: 139 SDSAKSPHETLSDREYQVLRLIGSGKTVSEVAKLLSLSVKTVSTYRSHILDKMNLRNNAE 198

Query: 224 AIAKAIRFGY 233
                I+ G 
Sbjct: 199 LTLYVIQNGL 208


>gi|163752091|ref|ZP_02159298.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
 gi|161328037|gb|EDP99208.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
          Length = 210

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + NLT RE   LQ    G T+  IA +L +S  T+  +L  A  K+   +R QAIA A
Sbjct: 144 SDNLTIREREVLQALLSGSTNVNIASQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 201


>gi|149912597|ref|ZP_01901131.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149813003|gb|EDM72829.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 206

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR-NLT 175
           L    +G + + SE   L        +G           +     +   KR  A R  LT
Sbjct: 89  LDAGASGILTYNSEMSDLRVAARRVMNGDNYVQPDMAMDIFAKLRQAEAKRKEAERLRLT 148

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            RE+  ++    G T+ +I+ +L +S  TV  Y+GS   K  A NR++ + +A R G
Sbjct: 149 ARESQVVRHLMQGMTNGQISVELNISEKTVKHYVGSLKDKFGAANRLEVVLEAQRLG 205


>gi|152984927|ref|YP_001347090.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960085|gb|ABR82110.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 827

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L L   G +++EI E+L +S+HTV  +      KL    R QA+A+A   G
Sbjct: 765 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 824

Query: 233 YI 234
            +
Sbjct: 825 LL 826


>gi|38233207|ref|NP_938974.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199466|emb|CAE49117.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 231

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT RE   L+L   GYT +EIA +L +SV TV  +  +   K    NR      A
Sbjct: 166 PIVDALTRRELEVLKLLARGYTYKEIAAELFISVKTVETHASNILRKTQQSNRHALSRWA 225

Query: 229 IRFGY 233
                
Sbjct: 226 QSHDL 230


>gi|269103638|ref|ZP_06156335.1| transcriptional regulator LuxR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163536|gb|EEZ42032.1| transcriptional regulator LuxR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 209

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            + +  EL +K +     LT ++   L++  DG  +++IA +L +S  T+ A++ +   K
Sbjct: 136 ALDETDELVEKIA----TLTPQQLKVLKMLADGLLNKQIAYELDVSEATIKAHMTAIFRK 191

Query: 216 LDAVNRIQAIAK 227
           L   NR QA+  
Sbjct: 192 LSVTNRTQAVIL 203


>gi|205372380|ref|ZP_03225194.1| response regulator receiver [Bacillus coahuilensis m4-4]
          Length = 210

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
             +   ++     +   G   Q++     E  +        L+ERE   LQ   +G +++
Sbjct: 112 LAASIRLVHRGETLINQGLAKQLLASIPQENKEDSIYTKFGLSEREGQILQAIANGLSNK 171

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +I++KL L+  TV  Y+     KLD  +RI A
Sbjct: 172 QISQKLFLTEGTVKNYVSKIYAKLDVQDRIGA 203


>gi|146339448|ref|YP_001204496.1| response regulator FixJ [Bradyrhizobium sp. ORS278]
 gi|146192254|emb|CAL76259.1| two component transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 205

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 10/127 (7%)

Query: 116 AGIAFPVRLGFHKNGYVIFT----------SEFLMLANEVIIEAHGACYQVITDFLELFK 165
           +G    V  G       +              F       +IE      +       + +
Sbjct: 75  SGFPILVMTGHGDVPLAVEAMKLGAVDFLEKPFEDERLVAMIETAIKQAEPAAKNESVTQ 134

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              +   +L+ RE   +     G +++ IA +  +S  T+  Y  +   K+ A +  + +
Sbjct: 135 DILARVASLSPRERQVMDGLMAGLSNKLIAREYDISPRTIEVYRANVMTKMGANSLSELV 194

Query: 226 AKAIRFG 232
             A+R G
Sbjct: 195 RLAMRAG 201


>gi|324997109|ref|ZP_08118221.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 126

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE   LQ+   G T++EIA +L ++  TV A+L     KL   NR QA     
Sbjct: 51  PLGTLTGRELEVLQVLAAGATNKEIAARLFIAPKTVGAHLARIFAKLGVTNRTQAAGVLR 110

Query: 230 RF 231
           R 
Sbjct: 111 RH 112


>gi|291298679|ref|YP_003509957.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567899|gb|ADD40864.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 386

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L     G ++ ++A+ LG+SV TV  ++ +   K    +R +A   A+  G
Sbjct: 299 ELTAREKEVLSCLAAGMSNRQVAKSLGISVRTVTVHVSNLLRKTGTGSRTEAALWAVEHG 358

Query: 233 Y 233
            
Sbjct: 359 L 359


>gi|297582617|ref|YP_003698397.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141074|gb|ADH97831.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 218

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEE 193
                L   + +E H A   V     +   K    A   ++TERET+ +   G G +++E
Sbjct: 116 GIRTCLEGGLALEPHVAANVVPLLMNKPETKPEFPALPEDITERETTVIACVGRGLSNKE 175

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           I+E+L LSV TV   +     KL+  +R Q    AIR G+
Sbjct: 176 ISEELYLSVGTVKNLISVILHKLELRDRTQLAIYAIRSGF 215


>gi|62179158|ref|YP_215575.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126791|gb|AAX64494.1| fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA
           family) [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713620|gb|EFZ05191.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 241

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL   + ++ I  A    
Sbjct: 180 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 239

Query: 233 YI 234
            +
Sbjct: 240 LL 241


>gi|328885800|emb|CCA59039.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 197

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 152 ACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              +     L       +           L++RE   L L  +G ++ +I  ++ LS  T
Sbjct: 95  MSPKASRALLRSHPGAGAPQDADVSRVGLLSDRERDVLVLVAEGLSNADIGTRIHLSAGT 154

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++ S   KL   +R+QA   A R G +
Sbjct: 155 VKDHVSSILTKLRVSSRVQAALLAERAGLL 184


>gi|300934165|ref|ZP_07149421.1| putative transcription regulator [Corynebacterium resistens DSM
           45100]
          Length = 240

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +++      LT RE   L+L   GYT  E+AE+L +SV TV  ++ +   K    NR  
Sbjct: 173 DEEKRLVLDELTRREKEVLRLLARGYTYREMAERLFISVKTVETHVSNILRKTQQSNRHA 232

Query: 224 AIAK 227
               
Sbjct: 233 LTRW 236


>gi|300783390|ref|YP_003763681.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792904|gb|ADJ43279.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 21/203 (10%)

Query: 47  RQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV 106
            +  I  + ++ +    +   L        + H  +G   +   +       E    + +
Sbjct: 5   ERTRIVIVDDHPVVHDGVAAQLQRYPDMVVVGHAGTGAEAVTVCA------AEHPDVVLL 58

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF 164
            L       A +   +      +  ++FT+  E + +A  +   A G   +         
Sbjct: 59  DLRLPDCLAADVVPALHRVSPDSRILLFTAFPEHVAVAPTLAAGACGILVKHAGAIAIRD 118

Query: 165 KKR-------------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             R             +S+   +T RE   L+L   G+T+ EI  +L LS++TV  YL +
Sbjct: 119 AIRSVVRTGAFRTGTPASSTAPVTAREYDVLRLVAAGHTNPEIGTELNLSINTVKTYLWT 178

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL A NR Q IA A   G +
Sbjct: 179 VMQKLAARNRAQLIANARGQGLL 201


>gi|226362510|ref|YP_002780288.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240995|dbj|BAH51343.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 127

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            V++    A   V        +    +     LT RE   L +  DG ++ EI   L +S
Sbjct: 34  RVLLSGAHANSCVHAGLAARAETACPSDHDDPLTGREHEILGMIADGASNAEIGRDLFIS 93

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAK 227
            +TV  ++ +   K+   NR  A+AK
Sbjct: 94  RNTVRFHVSNILRKMSVNNRTAAVAK 119


>gi|225620688|ref|YP_002721946.1| DNA-binding response regulator, LuxR family protein [Brachyspira
           hyodysenteriae WA1]
 gi|225215508|gb|ACN84242.1| DNA-binding response regulator, LuxR family protein [Brachyspira
           hyodysenteriae WA1]
          Length = 317

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           NLT RE   L    DG T++E++  L +S++TVN ++ +   K    NR++ + K
Sbjct: 259 NLTRREKEILSYLLDGKTNKEVSLILSISLNTVNNHVANIYEKSGVKNRVELVNK 313


>gi|213691407|ref|YP_002321993.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522868|gb|ACJ51615.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 220

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +      +NLT RET  + L   GYTS+EI + LG+   TV  Y+   T K+D  NR QA
Sbjct: 151 EDAGQYHKNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQA 210

Query: 225 IA 226
           + 
Sbjct: 211 VI 212


>gi|167902027|ref|ZP_02489232.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 279

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++     +  L     G L   +    P  L       V+   
Sbjct: 63  LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 119

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 120 HYVPPSALNLTEPAARARDSRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|116621568|ref|YP_823724.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224730|gb|ABJ83439.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 225

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 152 ACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +++       L     S   +L+ RE   L+L  +G TS++IA  L L + TV +Y 
Sbjct: 130 VSDRLLQRIQRGDLETHDRSPLESLSPRELQVLRLVAEGKTSKDIAVLLDLGLQTVRSYR 189

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
            +   KL   N       A+  G 
Sbjct: 190 KTMMKKLGVNNVAGLTQLALAAGI 213


>gi|108760620|ref|YP_631897.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108464500|gb|ABF89685.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 223

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +K+      LT  E   L+    G ++ E+   + L   TV  +L     K+   + ++
Sbjct: 151 AEKKLENPWALTPLEFEVLRYVAKGLSNAEVGHVMTLERRTVRTHLSHIYRKMGVNSHVE 210

Query: 224 AIAKAIRFGYI 234
           A+  A+R G +
Sbjct: 211 AVVMALRAGVV 221


>gi|86138703|ref|ZP_01057276.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
 gi|85824763|gb|EAQ44965.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
          Length = 204

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L     G +++EIA  L L   T+  ++ +   KL+A NR QA   A   G
Sbjct: 143 KLSPRENEVLSGLCKGQSTKEIARDLDLQEVTIKLHVRTLCRKLEAKNRTQAAMIAKEAG 202

Query: 233 Y 233
            
Sbjct: 203 L 203


>gi|327334996|gb|EGE76707.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1]
          Length = 179

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                G   F  +         ++    A  + I   L   +        L+ RE   L+
Sbjct: 70  RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 128

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LA  G +   IA +L LSV TV  ++ SA  K  A NR +A   A R G++
Sbjct: 129 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 179


>gi|326330805|ref|ZP_08197106.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
 gi|325951335|gb|EGD43374.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
          Length = 228

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 153 CYQVITDFLELFK--KRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             + +   L       R++AA      LTERE       G G ++ EIA++L LS+ TV 
Sbjct: 141 ATRTLITRLRAEPTGDRAAAAGRRLEALTEREHEVALAVGRGLSNAEIAKELYLSIPTVK 200

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++     KL A NR+Q        G +
Sbjct: 201 AHVSRLFDKLGATNRVQIAITVHDAGLV 228


>gi|311742977|ref|ZP_07716785.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311313657|gb|EFQ83566.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 216

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 7/125 (5%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS 168
            G +    L     GY++  +    +   +                QV+  F  + +   
Sbjct: 86  DGDSVFAALRAGARGYLLKEAGADDVERTLAAVMRGEAVFGPRVAEQVVGFFSGIGRSSP 145

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            A  +LT RE   L L   G  +  IA +L +S  TV   +     KL A  R +A+A+A
Sbjct: 146 QAFPHLTVREGEVLDLMARGLDNASIARRLFVSEKTVRNRVSDVLAKLQARTRAEAVARA 205

Query: 229 IRFGY 233
              G 
Sbjct: 206 RDAGI 210


>gi|189219460|ref|YP_001940101.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Methylacidiphilum infernorum V4]
 gi|161075723|gb|ABX56609.1| transcriptional regulator [Methylacidiphilum infernorum V4]
 gi|189186318|gb|ACD83503.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 227

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           ++S    L++RE    QL G G +S +IA++L LS+ TV AY  S   KL   +  + + 
Sbjct: 155 KTSPLGKLSDRELEVFQLIGKGLSSRQIADQLHLSIKTVEAYRASIKQKLKLQSGTELVH 214

Query: 227 KAI 229
            AI
Sbjct: 215 YAI 217


>gi|72163208|ref|YP_290865.1| regulatory protein LuxR [Thermobifida fusca YX]
 gi|71916940|gb|AAZ56842.1| regulatory protein, LuxR [Thermobifida fusca YX]
          Length = 286

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
              +++       +        +  + A  A  L+ RE   L     G T++E+AE LGL
Sbjct: 192 RRRLVDVCRRTRLLAGRVPSADRSPAPAVAAVRLSPREREVLAEVARGCTNDEVAEALGL 251

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             +TV +YL SA  KL A NR+QA+  A   G
Sbjct: 252 LPNTVKSYLKSAMRKLGATNRVQAVNLARAAG 283


>gi|329961768|ref|ZP_08299799.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328531509|gb|EGF58349.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 186

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ RE   L L   G  ++EIA+KL +S+ TV ++  + T KL   +       A
Sbjct: 116 PGEHELSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIYA 175

Query: 229 IRFGYI 234
           +  GY+
Sbjct: 176 VMHGYV 181


>gi|319940251|ref|ZP_08014603.1| response regulator protein [Streptococcus anginosus 1_2_62CV]
 gi|319810553|gb|EFW06889.1| response regulator protein [Streptococcus anginosus 1_2_62CV]
          Length = 227

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            ++++ E   +Q  G G +++EIA KL LS  T+  YL     KL+  +R Q    A++ 
Sbjct: 155 EDMSQTEWKIIQQIGFGVSNKEIAAKLFLSEGTIRNYLSGILSKLNLRDRTQLAIWAVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|317403552|gb|EFV84049.1| hypothetical protein HMPREF0005_03096 [Achromobacter xylosoxidans
           C54]
          Length = 238

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182
                GY+   S    LA  V +   G           L    +       LT+R+   L
Sbjct: 127 RAGVAGYLPKASSPDALAAAVSLVLAGGECYPQPTARPLATAHAPLQELRELTQRQEEIL 186

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           QL   G T  EI +++G+SV TV ++  +   KL+A N+ +A   A++ G +
Sbjct: 187 QLLVQGKTMREIGQQVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMGLV 238


>gi|315617864|gb|EFU98462.1| response regulator [Escherichia coli 3431]
 gi|320184742|gb|EFW59534.1| response regulator [Shigella flexneri CDC 796-83]
 gi|323158603|gb|EFZ44617.1| response regulator [Escherichia coli E128010]
 gi|323165290|gb|EFZ51078.1| response regulator [Shigella sonnei 53G]
 gi|323180836|gb|EFZ66376.1| response regulator [Escherichia coli 1180]
 gi|323186794|gb|EFZ72114.1| response regulator [Escherichia coli RN587/1]
 gi|332095450|gb|EGJ00471.1| response regulator [Shigella dysenteriae 155-74]
 gi|332756063|gb|EGJ86416.1| response regulator [Shigella flexneri 4343-70]
 gi|332766645|gb|EGJ96849.1| bacterial regulatory s, luxR family protein [Shigella flexneri
           2930-71]
 gi|333003002|gb|EGK22556.1| response regulator [Shigella flexneri VA-6]
 gi|333003353|gb|EGK22899.1| response regulator [Shigella flexneri K-218]
 gi|333017784|gb|EGK37091.1| response regulator [Shigella flexneri K-227]
          Length = 166

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 89  EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 148

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 149 THLAIRHGL 157


>gi|302526449|ref|ZP_07278791.1| predicted protein [Streptomyces sp. AA4]
 gi|302435344|gb|EFL07160.1| predicted protein [Streptomyces sp. AA4]
          Length = 279

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELF--------KKRSSAARNLTERETSCLQLAGDGY 189
            L    E   E       V    L                   +L+ RE   L+ A  G 
Sbjct: 174 DLEAVRESHAELRRIAAAVEDPELRARIDAVCQSLTGDPVRGPSLSPRELDVLEGAAAGQ 233

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+ +IAE LGL   TV +YL +A  KLDA  R+QA+  A R   +
Sbjct: 234 TNADIAEALGLGPETVKSYLRNAMRKLDAKTRLQAVNAARRANLL 278


>gi|296284992|ref|ZP_06862990.1| two component LuxR family transcriptional regulator [Citromicrobium
           bathyomarinum JL354]
          Length = 216

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 152 ACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
              Q+    L L  +            LT RE   L+L   G+  +E+A+KL ++V TV 
Sbjct: 129 ISPQIARYLLNLVPQPEEPKDDGLEIRLTAREKDILRLIAHGFKRQEVADKLNITVGTVG 188

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ +   KL+  +  QA+A A R G 
Sbjct: 189 THINNVYRKLEVGSNTQAVATANRLGL 215


>gi|307725916|ref|YP_003909129.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307586441|gb|ADN59838.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 225

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQL 184
                 ++FL                + +D       RS A       +LT RE   +  
Sbjct: 102 AMKAGATDFLAKPFRDQDMLDAVEQALASDAQRRAASRSVADLRRCYESLTPREREVMAF 161

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              G  +++IA +L LS  TV  + G A  K+ A +    + KA   G 
Sbjct: 162 VAAGLMNKQIAGELNLSEITVKIHRGQAMRKMGARSLADFVRKAETLGL 210


>gi|302525732|ref|ZP_07278074.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434627|gb|EFL06443.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 217

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 4/124 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                     +   V          +  +   +LA +V                      
Sbjct: 92  AALRAGAAGFLLKSVEAPRLIEAVRLVAAGEGVLAPQVTKRL----IAAFASTPAAPSPA 147

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +   +LTERE   L   G G ++ EI  +L +   TV  ++     KL   +R+QA   
Sbjct: 148 PTGLADLTEREREVLGCLGAGLSNAEIGARLYIGEATVKTHVSRVLAKLGLRSRVQAAIL 207

Query: 228 AIRF 231
           A   
Sbjct: 208 AQDH 211


>gi|167906142|ref|ZP_02493347.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 273

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 45  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 97  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 + +     +          +   L   +  +R + 
Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268


>gi|167851329|ref|ZP_02476837.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167899971|ref|ZP_02487372.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
          Length = 85

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  +  LT +E   L+L G   +++EIA  + +   TV  +L +   KLDA +R  A+
Sbjct: 13  PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 72

Query: 226 AKAIRFGYI 234
            +A+  G +
Sbjct: 73  RRALVLGLL 81


>gi|126738141|ref|ZP_01753862.1| DMSO reductase regulatory protein DorX [Roseobacter sp. SK209-2-6]
 gi|126720638|gb|EBA17343.1| DMSO reductase regulatory protein DorX [Roseobacter sp. SK209-2-6]
          Length = 264

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 21/237 (8%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
             +       +        F    ++          L  +L                   
Sbjct: 25  RDDFPEVFRALLQTC--CQFESMILSRFSGTSAPICLYQDLDEMQAAISVEFYASGPYLL 82

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
           D       +   P  ++ +          +        +     I   ++   ++   + 
Sbjct: 83  DPLYQACRNNAEPGAYRLLDLAPETFFRSEYYKTFYRKISISDEIGILIKEDQNRWIVIS 142

Query: 134 FTSEFLMLA--NEVIIEAHGACYQVITDFLE------LFKKRSSAAR-----------NL 174
                       E     +     + +  L         +++ + A             L
Sbjct: 143 LARFARQPKFKPEDAQRLNAVFTLISSAALRHWGEAVTSQEKENTADWQQRMQTFGNGRL 202

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + RE   + L   G++S   A  LG++V TV  +   A  KL   ++ +  A A R 
Sbjct: 203 SPREMEVVLLVLQGHSSPTAAAYLGITVGTVKVHRHHAYAKLGVASQAELFAMATRH 259


>gi|15965995|ref|NP_386348.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307314667|ref|ZP_07594266.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307322066|ref|ZP_07601443.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15075265|emb|CAC46821.1| Transcription regulator luxR family [Sinorhizobium meliloti 1021]
 gi|306892302|gb|EFN23111.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306899000|gb|EFN29645.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 267

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 68/232 (29%), Gaps = 39/232 (16%)

Query: 24  IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD----SGDIPNILIETYGDDFLFH 79
           +   +      ++          +++ +     +D +       +         D F  H
Sbjct: 34  MSTLMTFDYVVVFAYRG------KERPLDLYSTFDAEDHVLFVSLYQAGPYLL-DPFY-H 85

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA--GIAFPVR--------LGFHKN 129
                 P +W+  +       S +               G   PV         L   + 
Sbjct: 86  AARAPKPGVWRMRELAPDRFFSSEYYRTYYVQTGLAEEVGFFVPVSEQVTVVLSLMRREA 145

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----------SAAR------ 172
             V   +EF +L     + A    +             +             A       
Sbjct: 146 TGVFSATEFALLKKAEPLVAAFVRHHWAELDRRFDTALAKKGRGRRKAAHPPADGVWRHL 205

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           NLTERE + ++L   G++SE I  KLG+S  TV  +  +   KL   ++ Q 
Sbjct: 206 NLTEREAAIIELVLQGHSSESIGLKLGISTGTVKVHRRNVYRKLGISSQTQL 257


>gi|47564323|ref|ZP_00235368.1| DNA-binding response regulator, putative [Bacillus cereus G9241]
 gi|47558475|gb|EAL16798.1| DNA-binding response regulator, putative [Bacillus cereus G9241]
          Length = 204

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+ K I+ 
Sbjct: 138 EELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFNKLNVSSSLEAVTKGIKL 197

Query: 232 GYI 234
           GYI
Sbjct: 198 GYI 200


>gi|330465133|ref|YP_004402876.1| LuxR family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328808104|gb|AEB42276.1| LuxR family transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 386

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R +A   LT RE   L     G +++++A  LG+SV TV  ++ +   K  A +R +A 
Sbjct: 301 PRVAAVAELTGREVEVLDCLVAGMSNKQVARALGISVRTVTVHVSNLLRKTGAASRTEAA 360

Query: 226 AKAIRFGY 233
             A+R   
Sbjct: 361 LWAVRQRL 368


>gi|327439322|dbj|BAK15687.1| DNA-binding HTH domain-containing protein [Solibacillus silvestris
           StLB046]
          Length = 73

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT+RE    +L    Y++ EI+ KLG+S  TV  ++ +   KL   +R QAI + +R 
Sbjct: 10  LTKREREIFELLIKDYSTREISTKLGISEKTVRNHISNTIQKLGVSSRTQAILELLRL 67


>gi|317405619|gb|EFV85919.1| hypothetical protein HMPREF0005_01372 [Achromobacter xylosoxidans
           C54]
          Length = 239

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 9/220 (4%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
           +  L  ++  + A + +                     +    +  +         D   
Sbjct: 10  AALLMALRETVAADHVSHVFYGHDGSVQYSSAASLLNQSLIEWTTTVYVDDQFYRRDPNY 69

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA--FPVRLGFHKNGY---V 132
                                     L       L    G A    +     +      +
Sbjct: 70  ALLRDLACRPEHHPDLIIQAAAPERILDAEYRELLFERPGFASKISLIGARSEGASYINL 129

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDG 188
            F+        +V+         +     +L ++ ++ A      L+ERE     L   G
Sbjct: 130 YFSRSHPPGVTDVMRGRAPLLIALARRHHQLCRREAAPAPIWSDGLSEREVQVADLLRQG 189

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            T++E+  +LGLS  TV  Y      K +  +  + + KA
Sbjct: 190 RTAKEVGRELGLSPTTVVTYKNRIFKKSNVASLKEFLIKA 229


>gi|320109005|ref|YP_004184595.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319927526|gb|ADV84601.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 203

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 140 MLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 + +A    ++ +         +   S    LTERE   L  AG+G T+ E+A +
Sbjct: 107 DRPAAELADAVRRVHRGLRVIDPDLAAEAWGSEVDPLTERERQILLRAGEGRTTAEVARE 166

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LGLS  TV  YL  A  KL AVNRI A   A   G++
Sbjct: 167 LGLSEGTVRNYLSEAMSKLGAVNRIDAARMARAKGWL 203


>gi|296168206|ref|ZP_06850198.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum
            ATCC BAA-614]
 gi|295896822|gb|EFG76452.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum
            ATCC BAA-614]
          Length = 1102

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 172  RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +LT  E   ++L G+G  +++IA +L +S  TV ++L     KL   +R+Q   +A R 
Sbjct: 1043 ESLTPTELDVVRLVGEGLPNKDIAARLFISPRTVQSHLTHVYTKLAVSSRVQLAREAARH 1102


>gi|257067453|ref|YP_003153708.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558271|gb|ACU84118.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 255

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +  SA   +TERE    +L   G  +++I E+L +SV TV  +LG    KL   NR+Q
Sbjct: 186 ADEPPSAPEGITEREWDVARLVARGLANQQIGEQLFMSVATVKTHLGRLYHKLQVTNRVQ 245

Query: 224 AIAKAIRFG 232
              + +  G
Sbjct: 246 LAIRVLELG 254


>gi|256850848|ref|ZP_05556237.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260661059|ref|ZP_05861973.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|282934481|ref|ZP_06339736.1| two-component response regulator [Lactobacillus jensenii 208-1]
 gi|297205722|ref|ZP_06923117.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii
           JV-V16]
 gi|256615910|gb|EEU21098.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260547996|gb|EEX23972.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|281301428|gb|EFA93717.1| two-component response regulator [Lactobacillus jensenii 208-1]
 gi|297148848|gb|EFH29146.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii
           JV-V16]
          Length = 201

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L++     T++E+A+KL LS  TV  Y+ S   K    +R++A+  A   G
Sbjct: 140 PLTNREMDILKMLEQVATTKELAQKLFLSEGTVRNYISSILSKTGTSSRLEALNLARNKG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|225351362|ref|ZP_03742385.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157706|gb|EEG70989.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 220

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 30/63 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + S    NLTERE   +QL  +GY + EIA KL LS  TV   +     K +  NR +
Sbjct: 152 ENRFSGRFANLTERERDVMQLVAEGYDNREIAAKLFLSEGTVRNRISDILAKTNVTNRTK 211

Query: 224 AIA 226
              
Sbjct: 212 LAV 214


>gi|254472083|ref|ZP_05085484.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211959285|gb|EEA94484.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 202

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 25/90 (27%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 E II                       A  LT RE   L     G +++E    
Sbjct: 104 EKPFDVESIISRVREAVSRTAQASGANTMTFPGAETLTPRERQVLTEITAGSSNKEAGRN 163

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L +S  TV  +      KL A N    +  
Sbjct: 164 LKISPRTVEVHRARIMEKLGARNAADLVRI 193


>gi|33597570|ref|NP_885213.1| virulence factors transcription regulator [Bordetella parapertussis
           12822]
 gi|33573998|emb|CAE38318.1| virulence factors transcription regulator [Bordetella
           parapertussis]
          Length = 233

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + LQL   G ++++IA+ + LS  TV+ Y      KL+A + ++ I  A R   
Sbjct: 173 LSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNL 232


>gi|158318331|ref|YP_001510839.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113736|gb|ABW15933.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 249

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 65/225 (28%), Gaps = 12/225 (5%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALD-----FPRRQQLICELHNYDLDSGDIPNIL 68
           + +       +   I    F +     ++          +  I  L         +P+  
Sbjct: 28  VDDHPLWREALSRDIAEAGFVVVGTAGSVAQALRVLAATRPEIVVLD------LGLPDGS 81

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                   +        P+         V  S  Q  V           +    R     
Sbjct: 82  GVEVIRALV-GSAESPYPLTGAPASVLVVSASGEQADVLEAVKAGASGYLLKSARPEELV 140

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +          +    +     G   +   +        SS A  LT RE   L+L   G
Sbjct: 141 DAVRRTARGVAVFTAGLAALVLGENSRAARNSGSRSGPGSSTAPRLTAREVEVLRLVAKG 200

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ + A +LG+S  TV  ++ +   KL   NR++    A+R GY
Sbjct: 201 LSARDAARQLGVSHRTVQNHVHNVLGKLQLRNRVELTRFAVREGY 245


>gi|170022343|ref|YP_001718848.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169748877|gb|ACA66395.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
          Length = 196

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A   LT RE     L  +G    EIAE LGLS  TV+ +  +   KL   N ++   K
Sbjct: 135 AVDPLTRREREVAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 192


>gi|330468229|ref|YP_004405972.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811200|gb|AEB45372.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 208

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +G     +     + EV+                           L+ RE   L+L  +G
Sbjct: 113 DGIRRAAAGDSPFSQEVLRRLVHRAVHA-------RTGSPEPVGGLSAREQEVLRLVAEG 165

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            ++ EIAE+L + V TV  ++ S   K  + NR++    A 
Sbjct: 166 LSNAEIAERLHIGVTTVKTHITSLMTKTGSPNRVRLALLAH 206


>gi|293610601|ref|ZP_06692901.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|292826945|gb|EFF85310.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|325123833|gb|ADY83356.1| two component transcriptional regulator, LuxR family [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 216

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +          +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 135 LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 195 GVQNRTQAV 203


>gi|271965253|ref|YP_003339449.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270508428|gb|ACZ86706.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 937

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 36/100 (36%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                +        F  L             + I     L + R   A  L++RE    +
Sbjct: 833 DRHATSALAELAERFGALGATHDAARCRRALRDIGAESPLPRGRKGTAGALSQREREVAR 892

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           L   G T+ EIA+ L LS  TV  ++ +   KL   +R +
Sbjct: 893 LVALGRTNREIADVLFLSTRTVETHVATVLRKLGVRSRTE 932


>gi|262370891|ref|ZP_06064215.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
 gi|262314253|gb|EEY95296.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
          Length = 216

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                      +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 135 FDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 195 GVQNRTQAV 203


>gi|302558364|ref|ZP_07310706.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475982|gb|EFL39075.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 213

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +             +   +LT RE   L   G+G ++  IA++L ++  TV  ++ 
Sbjct: 131 RLIAEFAAKPARPVTADPAVLDSLTRREREVLSCLGEGLSNAGIADRLDMAEATVKTHVS 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               KL+  +R+QA   A   G 
Sbjct: 191 RLLGKLELRSRVQAAVLAQELGI 213


>gi|85713171|ref|ZP_01044202.1| Response regulator, LuxR family protein (CheY, HTH domains)
           [Idiomarina baltica OS145]
 gi|85692995|gb|EAQ30962.1| Response regulator, LuxR family protein (CheY, HTH domains)
           [Idiomarina baltica OS145]
          Length = 210

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++ +     LT ++   L    +G  +++IA +L ++  TV A++ +   KL   +R Q
Sbjct: 141 DQELARKVSELTPQQYRVLHFLHEGLLNKQIAYQLNITEATVKAHITAIFRKLGVYSRTQ 200

Query: 224 AIAKAIRFGY 233
           A+  A R   
Sbjct: 201 AVLVAERLQL 210


>gi|314915868|gb|EFS79699.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
          Length = 206

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                G   F  +         ++    A  + I   L   +        L+ RE   L+
Sbjct: 97  RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LA  G +   IA +L LSV TV  ++ SA  K  A NR +A   A R G++
Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|310830322|ref|YP_003965422.1| two component LuxR family transcriptional regulator
           [Ketogulonicigenium vulgare Y25]
 gi|308753228|gb|ADO44371.1| two component LuxR family transcriptional regulator
           [Ketogulonicigenium vulgare Y25]
          Length = 217

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 152 ACYQVITDFL---ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
              +++T+      L  +RS++   LT RE   L +   G++++EIA    +   TV  +
Sbjct: 127 LAARILTEIRVEERLSPQRSASLDLLTPREAEVLNMVAAGHSNKEIARLGDMQEKTVKHH 186

Query: 209 LGSATVKLDAVNRIQAIAK 227
           +     KL A NR +A   
Sbjct: 187 MTRILHKLGARNRTEAALL 205


>gi|282853097|ref|ZP_06262434.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582550|gb|EFB87930.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922742|gb|EFS86573.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965826|gb|EFT09925.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982968|gb|EFT27060.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091273|gb|EFT63249.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094508|gb|EFT66484.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315105228|gb|EFT77204.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329003|gb|EGE70763.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 218

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G T+ EIA+ L ++  TV  ++G    KL+  +R+  +  A   G 
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 234 I 234
           I
Sbjct: 218 I 218


>gi|258652644|ref|YP_003201800.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555869|gb|ACV78811.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 220

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                A  LT+RE   L L   G  + EIA    LS +T+ +Y+ S   K+   +R QA+
Sbjct: 140 DWPGRAEGLTDREAEILALITQGRGNAEIASMTYLSPNTIKSYIRSVYRKIGVSSRTQAV 199

Query: 226 AKAIRFGY 233
              +  G+
Sbjct: 200 LWGVHHGF 207


>gi|302553857|ref|ZP_07306199.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471475|gb|EFL34568.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 325

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 166 KRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            R +A       L+ RE   + L   G  +++IA    +S  TV  ++     KL + +R
Sbjct: 242 GRPAAPDRSRFQLSTREAEIMDLIASGMNNQQIAATCFISEKTVKNHINRIFAKLHSTSR 301

Query: 222 IQAIAK 227
            +A+AK
Sbjct: 302 GEAVAK 307


>gi|251791073|ref|YP_003005794.1| DNA-binding transcriptional activator UhpA [Dickeya zeae Ech1591]
 gi|247539694|gb|ACT08315.1| two component transcriptional regulator, LuxR family [Dickeya zeae
           Ech1591]
          Length = 196

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            SS    LT RE    +    G   + IA +LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 ASSRRDPLTRRERQVAEKLAQGMAVKAIAAELGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|269125895|ref|YP_003299265.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310853|gb|ACY97227.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 218

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEFLMLA 142
           +      ES   L   L G       +   V                GY++   + L L 
Sbjct: 57  LDVRLGAESGLDLCRDLTGRSPDTRVVFLSVYDDEQYVFEALRAGARGYLLKRVDGLELV 116

Query: 143 NEVIIEAHG-------ACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEE 193
             +   A G          ++      L +      A R LT+RE+  L L   G +++ 
Sbjct: 117 RRLEEVAQGETVVDPTLAGRMAASAARLNRGEFWPGAHRGLTQRESEVLSLLVAGLSNKA 176

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +A +L +S  T+ ++L +   KL+  +R  AIA A+R G 
Sbjct: 177 MAARLVVSEETIKSHLRALYRKLEVTDRSGAIAVALREGL 216


>gi|126443348|ref|YP_001062270.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126222839|gb|ABN86344.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           668]
          Length = 273

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 45  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 97  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 + +     +          +   L   +  +R + 
Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSVPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268


>gi|116621654|ref|YP_823810.1| LuxR family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224816|gb|ABJ83525.1| transcriptional regulator, LuxR family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 228

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                  +        LTERE   L L   G +++E A +LG+S  T +++      KL 
Sbjct: 150 RRMFTPDEASVRLVFALTERERQVLVLIAAGKSTKEAAAQLGISYKTADSHRSRILEKLG 209

Query: 218 AVNRIQAIAKAIRFGYI 234
                  +  AIR G I
Sbjct: 210 VHETASMVRYAIRAGLI 226


>gi|328882352|emb|CCA55591.1| hypothetical protein SVEN_2305 [Streptomyces venezuelae ATCC 10712]
          Length = 598

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----------RNLTERET 179
            ++  ++      E      GA          +   R +AA             LT RE 
Sbjct: 484 MLLAAADRAAGDEEGARLELGAARAAFERLGAVPDARRAAALLTGGSRRRLPGGLTAREA 543

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L+L  +G T+++IA  L +S HTV  +L +   KL   +R  A A A   G +
Sbjct: 544 EVLRLVAEGGTNKDIARTLVISEHTVARHLNNIFAKLGVGSRASATAYAYAHGLV 598


>gi|318060080|ref|ZP_07978803.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318080793|ref|ZP_07988125.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 239

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            +I ++L+  ++    A    LT RE   L+L  +G++S++IA  L +SV TV  +  + 
Sbjct: 156 ALIRNYLDQARRGEEPAGGSTLTPREEEILKLVAEGHSSKDIAALLVISVKTVERHRANT 215

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R++    AIR G +
Sbjct: 216 LHKLGLKDRLELTRYAIRAGLV 237


>gi|294815678|ref|ZP_06774321.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326444025|ref|ZP_08218759.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328277|gb|EFG09920.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 221

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 154 YQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
              +     L  +R   A +       L+ RE   L+L  +G +++ I   +GLS  TV 
Sbjct: 133 AAPMGAGARLGHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVK 192

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++L     KL   +R   +A A+R G I
Sbjct: 193 SHLARIARKLGTGDRAGMVAVALRTGII 220


>gi|291302859|ref|YP_003514137.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572079|gb|ADD45044.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 155

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L + + S    LT+RE   L    +G ++ EI  +L ++  T+  +      KLDA +R
Sbjct: 82  ALSRPKPSGTLTLTDREREVLGGMAEGKSNAEIGRELFVTEDTIKTHARRLFRKLDARDR 141

Query: 222 IQAIAKAIRFGYI 234
             A+++  R   +
Sbjct: 142 AHAVSQGFRLELL 154


>gi|260885201|ref|ZP_05734512.2| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
 gi|260853156|gb|EEX73025.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
          Length = 235

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 6/158 (3%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                  +   +      I S   LS       L        +  G        F +  +
Sbjct: 74  LLPSFSALDQSAGFFHFFISSETLLSH--AQFFLQRKQQTIVLMHGEETLPLQGFRTFNV 131

Query: 140 MLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
               +V++ +     Q             +        LT RET  L+L   G  ++EIA
Sbjct: 132 RQPEDVLLRSILQMAQAGHRHRPRPVLEAQGEVQRISPLTPRETEVLRLVVSGLLNKEIA 191

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +LG+S+ TV ++  + T KL   +       A+  G 
Sbjct: 192 NRLGVSLTTVISHRKNLTAKLGFRSVSALTIYAVTHGI 229


>gi|284029107|ref|YP_003379038.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808400|gb|ADB30239.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 216

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               ++     +  ++        LT RE   L   G G ++EEI + L LS  T   Y+
Sbjct: 131 VAKLMMHRISRMPSRKVQEETLAGLTARELDILAHVGRGLSNEEIGQALFLSPETARTYV 190

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL   +R Q +  A + G +
Sbjct: 191 SRLLAKLGVRDRSQLVVLAHKAGLV 215


>gi|237730506|ref|ZP_04560987.1| transcriptional regulator FimZ [Citrobacter sp. 30_2]
 gi|226906045|gb|EEH91963.1| transcriptional regulator FimZ [Citrobacter sp. 30_2]
          Length = 210

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL     ++ I  A    
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIYAKLGLHTIVELIDYAKMHE 208

Query: 233 Y 233
            
Sbjct: 209 L 209


>gi|218130412|ref|ZP_03459216.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697]
 gi|217987413|gb|EEC53743.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697]
          Length = 236

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E S L+    G T++EIA +  LS HT+N++  +   KL   N  +A   A++ 
Sbjct: 167 DLLTSAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKA 226

Query: 232 GYI 234
           G +
Sbjct: 227 GIV 229


>gi|154496530|ref|ZP_02035226.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC
           29799]
 gi|150274163|gb|EDN01254.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC
           29799]
          Length = 817

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K       LTERE    QL   G  + EIAEKL +S  TV +++ S   K +   R + 
Sbjct: 753 EKYPEQMGQLTEREREVAQLVAAGLRNREIAEKLFISEETVKSHIRSIFNKTNIDRRSRL 812

Query: 225 I 225
           +
Sbjct: 813 V 813


>gi|149926392|ref|ZP_01914653.1| Two Component Transcriptional Regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149824755|gb|EDM83969.1| Two Component Transcriptional Regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 211

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178
           +R G             L+ A   + +          + L      +    A + L+ERE
Sbjct: 94  IRSGASGYLCKDCDRSDLVNAIHTVAQGRRYISANTAELLAREMTGESDKPAHQELSERE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                    G +   IA+ L LSV TV+ Y      KL   +  +    A + G +
Sbjct: 154 RQVFMRLVRGESVSAIAQVLHLSVKTVSTYRSRLLDKLGVNSNAELATYAHQHGLL 209


>gi|33601970|ref|NP_889530.1| virulence factors transcription regulator [Bordetella
           bronchiseptica RB50]
 gi|33576408|emb|CAE33486.1| virulence factors transcription regulator [Bordetella
           bronchiseptica RB50]
          Length = 227

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + LQL   G ++++IA+ + LS  TV+ Y      KL+A + ++ I  A R   
Sbjct: 167 LSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNL 226


>gi|308178660|ref|YP_003918066.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307746123|emb|CBT77095.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 201

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 8/170 (4%)

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             GD+ +        P+    +  +   +   + +  L+        +            
Sbjct: 34  ADGDEVVPAL--TGYPVDVALLDIQMPRQDGLRTAAELKLSHPEVKVLILTTFDRPGYFR 91

Query: 131 YVIFTSEFL----MLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQL 184
               +              +I A    +    + D     +   + A  LTERE   L L
Sbjct: 92  QAFESGAHGFLVKDSPPAELIAAIRRVHSGDKVVDPQRAMRSVGAEANPLTEREREILGL 151

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G    +IA  + LS  TV  +L +A  K +  NRI+A  +A   G+I
Sbjct: 152 AAAGAPVSQIASGVHLSAGTVRNHLSNAIGKTNTANRIEAARRAREMGWI 201


>gi|254161968|ref|YP_003045076.1| response regulator [Escherichia coli B str. REL606]
 gi|253973869|gb|ACT39540.1| response regulator [Escherichia coli B str. REL606]
 gi|253978063|gb|ACT43733.1| response regulator [Escherichia coli BL21(DE3)]
          Length = 169

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 92  EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 151

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 152 THLAIRHGL 160


>gi|254193239|ref|ZP_04899674.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
 gi|169649993|gb|EDS82686.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
          Length = 262

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 34  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 85

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 86  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 142

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 +       +          +   L   +  +R + 
Sbjct: 143 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 202

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 203 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 257


>gi|106879455|emb|CAJ20008.1| putative DNA binding regulatory protein [Streptomyces cattleya]
          Length = 234

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   + L   G  + +IA +L ++  TV  +L +   KLDA  R +A+ KA+  G 
Sbjct: 162 LTARELQVVALVARGLRNSQIARELVITEGTVKRHLSNVYAKLDAACRTEAVRKAVERGM 221

Query: 234 I 234
           +
Sbjct: 222 V 222


>gi|332528409|ref|ZP_08404401.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332042088|gb|EGI78422.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 312

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 39/155 (25%), Gaps = 6/155 (3%)

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
           L     D              W           +      L+      A +         
Sbjct: 151 LGVLLLDSQGRVAWRSPQATRWLQQIPALAEGEAAVRHWLLQLLEQGEALVTLS------ 204

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               +           E ++                  +R  +   LT RET  L     
Sbjct: 205 DGSQLQARHLGPGGPGERMVLLRHLPLAAAEAVARDPSQRRLSGAALTPRETEVLSWLAK 264

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           G T+ +I + LG+S  TVN +L     KL    R 
Sbjct: 265 GKTNRDIGDILGMSPRTVNKHLEHIFEKLGVETRT 299


>gi|315106440|gb|EFT78416.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 206

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                G   F  +         ++    A  + I   L   +        L+ RE   L+
Sbjct: 97  RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LA  G +   IA +L LSV TV  ++ SA  K  A NR +A   A R G++
Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|291614056|ref|YP_003524213.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584168|gb|ADE11826.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 208

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ERE + L L   G +  E+A +L +S  TV+ +      KL+  N  + I   +
Sbjct: 144 PREVLSEREYTILHLLVQGKSVNEVAAELVISNKTVSTHKARLMQKLNLQNNAELIRYGV 203

Query: 230 RFGYI 234
             G +
Sbjct: 204 EHGLV 208


>gi|291302798|ref|YP_003514076.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572018|gb|ADD44983.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 900

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 65/234 (27%), Gaps = 19/234 (8%)

Query: 16  ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
           +L      +   +  R+     + +  +    +            +      +       
Sbjct: 669 DLESGDERLGTHLLHRH-VFLCLAALSEGDIDRAEEFLSRALSNPALRR---VAPVEVRP 724

Query: 76  FLF-HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134
            L          +         V E + +L V           IA     G  +    + 
Sbjct: 725 VLAVGARIRHARLAAGEQPRHDVAELNAELPVHGRLDKAWHDTIAAMTTGGTAQAWADVV 784

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--------------SAARNLTERETS 180
            +   +     +  +     QV  +  +  +                      LTERE  
Sbjct: 785 AAWRALDQPYELALSLHIASQVTGNRAQARESAELITALGAAPLVTGDGDTSGLTEREHE 844

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L  +G ++ +IA KL +S  T   ++     KL A  R +A   A + G +
Sbjct: 845 VLALIVEGLSNRQIAAKLYISPSTAGVHVSHILAKLGAATRTEAATIAHKRGLV 898


>gi|169634739|ref|YP_001708475.1| putative two-component response regulator [Acinetobacter baumannii
           SDF]
 gi|169153531|emb|CAP02698.1| putative two-component response regulator [Acinetobacter baumannii]
          Length = 218

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +          +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 135 LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 195 GVQNRTQAV 203


>gi|167918297|ref|ZP_02505388.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 279

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++     +  L     G L   +    P  L       V+   
Sbjct: 63  LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 119

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 120 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|225155200|ref|ZP_03723695.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224804147|gb|EEG22375.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 240

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 11/166 (6%)

Query: 78  FHFNSGLLP-IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNG 130
                   P ++   +       S       L         +   +            +G
Sbjct: 59  RQLVHRTRPDVLVSDL--SMPGGSGVGFLRNLRRECPDTRIVVLTMHATALAMQDAFDSG 116

Query: 131 YVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              F ++         +I   H     + +  ++     S     L  RE   LQ    G
Sbjct: 117 AHAFVAKDDAFDTLVSIIRRVHSGEEFLFSRTMKEVTGGSQETPRLAPREREVLQGITKG 176

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +++EI  +L LS  TV  Y G    K +     + I  A+  G +
Sbjct: 177 LSTKEIGAQLFLSPKTVEVYRGRLMKKFNVTKGTELIHHAVASGIV 222


>gi|149375328|ref|ZP_01893099.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
 gi|149360364|gb|EDM48817.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
          Length = 213

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 1/121 (0%)

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARN 173
              I+  +  G         + E ++ A   + + A   C           +        
Sbjct: 93  REYISQLMFHGAKGYILKDVSVEEMVSAIRTVADGATYICRAATETLFRHGETMEPVESK 152

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE + L     G  S+ I+ +L + V TV  +  +   KLD     +    A     
Sbjct: 153 LTPREEAILSRVAKGLNSKAISNELNICVRTVETHRQNIKSKLDLNTTAELTKYAYDQQL 212

Query: 234 I 234
           +
Sbjct: 213 L 213


>gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 237

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F       + +       ++     L   +     + T RE+S LQL  +G  ++EI
Sbjct: 138 AARFADADMGQMAKQITEIRSLLAQAEAL-PAQEPVQHSFTPRESSVLQLVAEGLMNKEI 196

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+    +K    +R + +  A++   +
Sbjct: 197 ARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRLV 236


>gi|146291641|ref|YP_001182065.1| response regulator receiver protein [Shewanella putrefaciens CN-32]
 gi|145563331|gb|ABP74266.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens CN-32]
          Length = 200

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               A  +   + L  F+K+S       LTERE   L     G T+++I+E + LS+ T+
Sbjct: 111 ALVQAIEKAQCESLATFEKQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170

Query: 206 NAYLGSATVKLDAVNRIQAI 225
             +      KL+  N  + +
Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190


>gi|309789333|ref|ZP_07683923.1| response regulator [Shigella dysenteriae 1617]
 gi|308922727|gb|EFP68244.1| response regulator [Shigella dysenteriae 1617]
 gi|323174572|gb|EFZ60193.1| response regulator [Escherichia coli LT-68]
 gi|332757472|gb|EGJ87807.1| response regulator [Shigella flexneri K-671]
 gi|333017529|gb|EGK36841.1| response regulator [Shigella flexneri K-304]
          Length = 164

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 87  EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 146

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 147 THLAIRHGL 155


>gi|320106542|ref|YP_004182132.1| LuxR family transcriptional regulator [Terriglobus saanensis
           SP1PR4]
 gi|319925063|gb|ADV82138.1| transcriptional regulator, LuxR family [Terriglobus saanensis
           SP1PR4]
          Length = 236

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L   +++       T RE   L+L   G+T+ +IA KL +   T   ++G    K+   N
Sbjct: 154 LRSPEEKERPELRFTPREKQVLELLAAGHTNRDIAGKLSIDETTAKTHVGRLLRKIGVPN 213

Query: 221 RIQAIAKAIRFGYI 234
           R+     A+    +
Sbjct: 214 RVGLALYAVEKQIV 227


>gi|300787361|ref|YP_003767652.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796875|gb|ADJ47250.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 227

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 1/197 (0%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           +  A +    ++ +  +     D   +   +    G +      +   P     +     
Sbjct: 28  LAVAGEAGDGREALRLVRELRPDVVVMDIRMPGMDGIEATRRATAEPHPPKVLVLTTFDD 87

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
            E           G L  +     + L   +            +   +I +  G      
Sbjct: 88  DEYVYGALRAGASGFLLKSMALNAI-LDAIRVVAAGDALIAPSVTRRLIADFAGTAGPAA 146

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            +        S     +T+RE   L L G G ++ EIAE+L +S  T   ++     KL+
Sbjct: 147 PEPDTEPAADSGLLAEITDREREVLALVGQGLSNTEIAERLVISAATAKTHVARLFAKLE 206

Query: 218 AVNRIQAIAKAIRFGYI 234
           A +R+     A   G +
Sbjct: 207 ARDRVHLAIIAFEAGLV 223


>gi|163816627|ref|ZP_02207990.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759]
 gi|158447884|gb|EDP24879.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759]
          Length = 217

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 157 ITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            ++      +RS  A     ++ +E   ++L  DG  ++EIA +L LS  TV  Y+ S  
Sbjct: 137 HSESHSTDVERSPFADTQYEISSKEMDIIRLVADGLNNKEIASRLFLSEGTVRNYISSIL 196

Query: 214 VKLDAVNRIQAI 225
            KL   +R Q  
Sbjct: 197 DKLCLRDRTQLA 208


>gi|158316741|ref|YP_001509249.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112146|gb|ABW14343.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 231

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTER 177
           +  G             L+ A   +          +T  +    +           LT++
Sbjct: 116 IMAGAAGYVLKQIRGTALVDAVRQVAAGQSLLDPAVTSRVLFRLREGPVEDERLAGLTDQ 175

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L L  +G T+ +IA ++ L+  TV  Y+ S   KL   +R QA   A + 
Sbjct: 176 ERRILALIAEGLTNRQIAARMFLAEKTVKNYVSSMLSKLGMESRTQAAVFATKL 229


>gi|160890178|ref|ZP_02071181.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492]
 gi|156860566|gb|EDO53997.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492]
          Length = 254

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S  + L+ RE   L+L   G+ S+EIA +LG+S++TVN +  +   KL+A N ++AI   
Sbjct: 188 SPDKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSKLNANNIMEAIHIV 247

Query: 229 IRFGY 233
              G 
Sbjct: 248 ENLGI 252


>gi|149370505|ref|ZP_01890194.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149356056|gb|EDM44613.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 214

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   + L  + +T++EIA++L LS HT+ +Y  +   KL+  N       AI+ GY
Sbjct: 152 LTKREVEVISLIAEEFTTQEIADQLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGY 211

Query: 234 I 234
           +
Sbjct: 212 V 212


>gi|78062243|ref|YP_372151.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77970128|gb|ABB11507.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 913

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 9/146 (6%)

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153
           E      +    + +      +      +     + G ++        A+    +     
Sbjct: 765 ERAAALDTFAEVLEVAEPAGIYR----SIVDQGPEIGELLQAMRDQARASSQTRDRLAYI 820

Query: 154 YQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            +++              R++    L+ RE   ++L   G +++EIA  LG++  TV ++
Sbjct: 821 ERLLDGCRAQYQQDAQPARAAQRDMLSVRERDIVELIAHGQSNKEIARTLGIAPETVKSH 880

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + S  +KL+   R +A+A A   G +
Sbjct: 881 IKSLFMKLEVDKRARAVAVAQSLGLL 906


>gi|42519536|ref|NP_965466.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583825|gb|AAS09432.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
          Length = 224

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ E   +Q  G G +++EI+ KL LS  TV  Y+     KL+  +R Q    A++ G
Sbjct: 158 SKSEWCVIQQVGLGLSNKEISTKLFLSEGTVRNYISKILEKLNLRDRTQLAIWAVQTG 215


>gi|146280078|ref|YP_001170235.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558319|gb|ABP72930.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 243

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT+R+   L+  G G +++EIA +L +S  TV  ++     K    NR Q    A+R
Sbjct: 172 PLTDRQNEVLRSLGAGASNKEIARQLSISEATVKIHVRHLMRKYGVSNRTQVAILAMR 229


>gi|332664117|ref|YP_004446905.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332931|gb|AEE50032.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 211

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L     G +  +IAE L +   TV +++ +   KL+  ++  AI KA     
Sbjct: 151 LTPREREVLSWMARGKSYTQIAEILFVDKETVRSHIKNIYGKLEVHSKADAIEKATLEKL 210

Query: 234 I 234
           I
Sbjct: 211 I 211


>gi|323137329|ref|ZP_08072407.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
 gi|322397316|gb|EFX99839.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
          Length = 220

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +     LT+RE + L     G  + EIA ++GL+  TV  ++ +   KL   +R
Sbjct: 150 RAASPSAEDEEPLTDREKAVLAHVAAGKGNREIAREMGLAEGTVKNHVSTILAKLHLRSR 209

Query: 222 IQAIAKAI 229
            +   +A+
Sbjct: 210 TELAIRAL 217


>gi|307726840|ref|YP_003910053.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587365|gb|ADN60762.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 223

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
           +           +   V         V   +    ++ E+  +     +  + + +++ +
Sbjct: 95  LAAALRGGARGYLLKTVDSDAMTTAIVRTMAGESAISPEMTGKLVS-AFNALQNGVKVDE 153

Query: 166 KRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            R      R+L+ RE   L+    G T++EIA  L ++  TV  ++     KL   +R+Q
Sbjct: 154 GRPEQNPIRDLSVREAEILEHIAQGRTNKEIARALNIAEATVKIHVQHILRKLKLSSRVQ 213


>gi|258655123|ref|YP_003204279.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558348|gb|ACV81290.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 209

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  +R+     LT RE   L++  DG  ++ IA +LG++  TV A+L S   ++   +R 
Sbjct: 138 LDSRRAPQPNLLTAREEQVLRMVADGLANKMIARRLGITERTVKAHLTSVYQRIGVTDRT 197

Query: 223 QAIAKAIRF 231
           QA     R 
Sbjct: 198 QAALWIQRR 206


>gi|190572437|ref|YP_001970282.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010359|emb|CAQ43967.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 200

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
               E + +A     Q I     +L     S A  LT+RE   L+LAG+G T+ EIAE+L
Sbjct: 105 DAPAENLADALRKVKQGIRAIDPQLALDAWSQADPLTDRERRVLRLAGEGRTASEIAEQL 164

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           GLS  TV  YL     KL   NRI+A   A + G++
Sbjct: 165 GLSHGTVRNYLSECIGKLGVANRIEAYRMARQKGWL 200


>gi|169794379|ref|YP_001712172.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|184159817|ref|YP_001848156.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213159043|ref|YP_002321041.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215481936|ref|YP_002324118.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB307-0294]
 gi|239503857|ref|ZP_04663167.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB900]
 gi|260550220|ref|ZP_05824433.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260557934|ref|ZP_05830147.1| two-component system response regulator protein [Acinetobacter
           baumannii ATCC 19606]
 gi|301347127|ref|ZP_07227868.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB056]
 gi|301513592|ref|ZP_07238829.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB058]
 gi|301597105|ref|ZP_07242113.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB059]
 gi|332854806|ref|ZP_08435569.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332868936|ref|ZP_08438495.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332872813|ref|ZP_08440778.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|169147306|emb|CAM85167.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|183211411|gb|ACC58809.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Acinetobacter baumannii ACICU]
 gi|193078647|gb|ABO13693.2| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
 gi|213058203|gb|ACJ43105.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213985989|gb|ACJ56288.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB307-0294]
 gi|260406748|gb|EEX00228.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260408725|gb|EEX02030.1| two-component system response regulator protein [Acinetobacter
           baumannii ATCC 19606]
 gi|322509730|gb|ADX05184.1| Putative two-component response regulator [Acinetobacter baumannii
           1656-2]
 gi|323519745|gb|ADX94126.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332727808|gb|EGJ59212.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332732979|gb|EGJ64181.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332738974|gb|EGJ69836.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 216

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +          +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 135 LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 195 GVQNRTQAV 203


>gi|311745099|ref|ZP_07718884.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1]
 gi|126577613|gb|EAZ81833.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1]
          Length = 216

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+    G    +I E L +S  TV  ++ +   KL   ++++A+ KA++   
Sbjct: 154 LTKREVEILEQTSKGLNYNQIGENLFISPKTVRKHIENIYHKLQVHSKLEAVQKAVKNRI 213

Query: 234 I 234
           I
Sbjct: 214 I 214


>gi|94266341|ref|ZP_01290042.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93453055|gb|EAT03537.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L    +G ++ EI     +S +TV +++     K    NR+     A+  G
Sbjct: 154 GLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213

Query: 233 Y 233
           Y
Sbjct: 214 Y 214


>gi|19553606|ref|NP_601608.1| DNA-binding HTH domain-containing protein [Corynebacterium
           glutamicum ATCC 13032]
          Length = 873

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---------RSSAARNLTERETSC 181
            +    +      +    A           + L  +         RS  A  LT +E   
Sbjct: 760 ALRRQGQRRRADEQFARAASLFQDMGADAMVTLANRERRVGGLGQRSEQAGGLTPQEYEI 819

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +L   G+ + E+A++L LS  TV  +L     KL   NR++  
Sbjct: 820 ARLVSSGHANREVAQELFLSPKTVEYHLTRVYKKLGIRNRMELA 863


>gi|332995574|gb|AEF05629.1| two-component response regulator [Alteromonas sp. SN2]
          Length = 297

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +T+RE+  L     G TS EI++ L +S  T N +L     KL   N+  A A A+R 
Sbjct: 236 PITKRESEVLYWISFGKTSWEISQILDISPRTANKHLEQIYKKLGVDNKTSAAAIALRL 294


>gi|329947896|ref|ZP_08294828.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523520|gb|EGF50618.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 203

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 58/170 (34%), Gaps = 10/170 (5%)

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH--KN 129
            GD+ L         +    +  +         +  + G  +P   +             
Sbjct: 37  RGDEVLPAVREH--AVDVALVDIDMPGRDGLAATAEVVGSGVPCRCLIVTTFGRPGYLSR 94

Query: 130 GYVIFTSEFL--MLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQL 184
           G     + F+      E + EA    +   +VI   L            LT+RE   LQ 
Sbjct: 95  GMEAGAAGFIVKDTPPEELAEAIRKVHAGLRVIDPELAQESVLLGP-NPLTDREKEVLQA 153

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  G  + EIA +L L   TV  YL SA  K  A NR +A   A   G++
Sbjct: 154 AATGADAREIAARLHLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203


>gi|297518835|ref|ZP_06937221.1| response regulator [Escherichia coli OP50]
 gi|323186310|gb|EFZ71660.1| response regulator [Escherichia coli 1357]
          Length = 162

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 85  EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 144

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 145 THLAIRHGL 153


>gi|226363828|ref|YP_002781610.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242317|dbj|BAH52665.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 546

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEE 193
           +        +  A       + D   L    +  ++ +  LT RE   L+L   G ++  
Sbjct: 442 DDTAQMEHDLASATYRQLGALPDLERLRAEFRSDAADSTPLTPREVCVLRLVAAGKSNRA 501

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +A  L LS  TV  +L +  VKL   +R  A A A     +
Sbjct: 502 VATDLFLSEKTVARHLSNIFVKLGISSRSAATAYAYEHHLV 542


>gi|254382332|ref|ZP_04997692.1| response-regulator protein [Streptomyces sp. Mg1]
 gi|194341237|gb|EDX22203.1| response-regulator protein [Streptomyces sp. Mg1]
          Length = 221

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                      ++A  V                 +  + ++A  +LT RE   L   G+G
Sbjct: 107 EAVRTVGRGEGLIAPAVTRRLIAEFAAPRPPRPAVPPETAAAVASLTRREREVLGRLGEG 166

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ EIA +L L+  TV  ++     KL+  +R QA   A   G 
Sbjct: 167 LSNAEIAGRLELAEGTVKTHVSRVLGKLELRSRAQAAVLARELGI 211


>gi|113866565|ref|YP_725054.1| response regulator [Ralstonia eutropha H16]
 gi|113525341|emb|CAJ91686.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 208

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 40/81 (49%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +    ++ ++R S    L+ RE + LQ    G++++ IA +L +S  TV+ +  +  
Sbjct: 127 MHTLETVRQIGEQRESGFARLSNREITILQYLARGHSNKSIAAQLLISSKTVSTHKANIM 186

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL+  + ++ +  A R   +
Sbjct: 187 AKLNVGSLVEMVDYARRHQLV 207


>gi|332991726|gb|AEF01781.1| two component LuxR family transcriptional regulator [Alteromonas
           sp. SN2]
          Length = 219

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           R+LT +E + L+    G  ++ IA +L +S  TV +++ S   KL A NR++ +A A
Sbjct: 152 RSLTRKELAVLKYLTQGLANKVIAYELNISETTVKSHVSSILKKLGASNRVKVVASA 208


>gi|296101290|ref|YP_003611436.1| LuxR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055749|gb|ADF60487.1| LuxR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 206

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            S    L+ R+   L L   G ++++I   LG++  TV  +L +   +L   NR +A   
Sbjct: 141 PSPLCTLSPRQREILHLVVQGNSNKQICRVLGIAEGTVKNHLHALFRQLGVRNRTEAAMI 200


>gi|302526791|ref|ZP_07279133.1| predicted protein [Streptomyces sp. AA4]
 gi|302435686|gb|EFL07502.1| predicted protein [Streptomyces sp. AA4]
          Length = 71

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               ++    L ERE   L+L  +GY++ EIA +LG S HTV   L     +L   NR  
Sbjct: 1   MDGEAAYRPQLGERELRVLRLVAEGYSNSEIAAELGWSEHTVKNALYDLMARLGVRNRAH 60

Query: 224 AIAKAIRFGYI 234
           A A A+R G I
Sbjct: 61  AAAYAVRNGLI 71


>gi|168185605|ref|ZP_02620240.1| response regulator [Clostridium botulinum C str. Eklund]
 gi|169296459|gb|EDS78592.1| response regulator [Clostridium botulinum C str. Eklund]
          Length = 206

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LTERE   L L G+G +++EI++K+ LS  T+  Y+ +   KL   +R Q    
Sbjct: 148 LTEREFEILALIGEGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIY 201


>gi|187923501|ref|YP_001895143.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714695|gb|ACD15919.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 522

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 2/114 (1%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P          +   +       E +        ++        + R+  A  L+ RE  
Sbjct: 411 PAFSPEQAAALLDEQARAGRFDAEAVEAI--VSSELGDLPASGERGRTPKAGLLSPREAE 468

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+    G +++E+A  L LS  TV  ++ S   KL+   R  A  KA   G I
Sbjct: 469 VLKHISLGASNKEVARILELSPSTVRTHVESVFRKLECSTRAAATLKASALGCI 522


>gi|116251612|ref|YP_767450.1| two component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256260|emb|CAK07341.1| putative two component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 219

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERET 179
           V  G       +  ++F +       + +    ++        +  +     R LT RE 
Sbjct: 100 VLTGHGGQAMTVNATKFHVSFIPQPFDLNALAEKIHAAIRTTMEIGRLEGNYRTLTPRER 159

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             ++   +G  ++++A KL +S  TV A+ G    K++A      +  A + 
Sbjct: 160 EVMKFVAEGLLNKQVAFKLNISEITVKAHRGQVMRKMNARTLPHLVNMAAKL 211


>gi|90418016|ref|ZP_01225928.1| two component response regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337688|gb|EAS51339.1| two component response regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 250

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 35/77 (45%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   +   ++      +LT R+         G ++++IA  LGLS   V A++      L
Sbjct: 131 LLPRVRAGERPDPQRVSLTARQAEVWNHLAKGASNKQIARSLGLSEGAVKAHVAGLLRLL 190

Query: 217 DAVNRIQAIAKAIRFGY 233
            A NR +A+ +A   G+
Sbjct: 191 GARNRTEALVRAGAVGW 207


>gi|315608462|ref|ZP_07883450.1| transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315249922|gb|EFU29923.1| transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 213

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             C ++    L   +        LT+ ET  L+    G+T+ EIAE+   S HTVN +  
Sbjct: 123 FICRRMTEMLLAPRQNEEEERVKLTKTETEVLKEIALGFTTREIAERRFSSFHTVNTHRK 182

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL      +A   A+R G +
Sbjct: 183 NLFRKLGVNTVHEATKYALRAGLV 206


>gi|167742175|ref|ZP_02414949.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167914465|ref|ZP_02501556.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
          Length = 273

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 45  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 97  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 +       +          +   L   +  +R + 
Sbjct: 154 VEVLLRDGGAVLAAFSLLRLACDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268


>gi|153007788|ref|YP_001369003.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559676|gb|ABS13174.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 213

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLELFKK 166
           +         I+  +  G         ++  ++ A   +          V    L+   +
Sbjct: 85  MLSMHDSREYISTSIMRGASGYVLKDVSTTEIVAAIHAVASGGTYFSSGVSEALLDSGDR 144

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +S     L+ RE   L L  +G ++ EIA +LG+S  TV  +  +   KL   +      
Sbjct: 145 KS---EGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTR 201

Query: 227 KAIRFGY 233
             I    
Sbjct: 202 YVIENRL 208


>gi|86751663|ref|YP_488159.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86574691|gb|ABD09248.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 224

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|94313637|ref|YP_586846.1| Two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357489|gb|ABF11577.1| Two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 264

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE S L+L  +G ++ ++   + LS  T+  Y  S   KL   N  + +  AI  
Sbjct: 154 DLLTARERSVLKLVAEGRSNRQVGIYMNLSPKTIEKYRASLMRKLGITNLTELVLIAISM 213

Query: 232 GYI 234
           G I
Sbjct: 214 GLI 216


>gi|332663474|ref|YP_004446262.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332288|gb|AEE49389.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 227

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   LQL  + YT+ EIAEKL +S  TV+ +  +   KL   N    +  AI++  +
Sbjct: 156 TSREKEILQLICEEYTTSEIAEKLFISPRTVDGHRNNLLEKLSCKNVAGLVVYAIQYQLV 215


>gi|317484063|ref|ZP_07942996.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia
           3_1_6]
 gi|316924707|gb|EFV45860.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia
           3_1_6]
          Length = 282

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            SS A +LT +E   L+L  +G ++++IA KL LSV T++ +  S   KLD  N  +   
Sbjct: 210 ASSKADSLTPKEKMVLKLIAEGNSNKDIAAKLNLSVKTIDTHRTSFMKKLDLHNVREVTR 269

Query: 227 KAIRFGYI 234
            A++ G +
Sbjct: 270 FAMQNGLV 277


>gi|86159176|ref|YP_465961.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775687|gb|ABC82524.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 215

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 152 ACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +V+          +R+     L++RE   LQL   G+T  ++A  LG++  TV  Y+
Sbjct: 129 RAAKVLLQEFRGDPPDQRAKDGPALSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYV 188

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                K+D   + +A   A+  G +
Sbjct: 189 KRIYEKMDVSTKAEAALLAVARGLV 213


>gi|258588733|pdb|3IX3|A Chain A, Lasr-Oc12 Hsl Complex
 gi|258588734|pdb|3IX3|B Chain B, Lasr-Oc12 Hsl Complex
 gi|258588735|pdb|3IX4|A Chain A, Lasr-Tp1 Complex
 gi|258588736|pdb|3IX4|B Chain B, Lasr-Tp1 Complex
 gi|258588737|pdb|3IX4|C Chain C, Lasr-Tp1 Complex
 gi|258588738|pdb|3IX4|D Chain D, Lasr-Tp1 Complex
 gi|258588739|pdb|3IX4|E Chain E, Lasr-Tp1 Complex
 gi|258588740|pdb|3IX4|F Chain F, Lasr-Tp1 Complex
 gi|258588741|pdb|3IX4|G Chain G, Lasr-Tp1 Complex
 gi|258588742|pdb|3IX4|H Chain H, Lasr-Tp1 Complex
 gi|258588743|pdb|3IX8|A Chain A, Lasr-Tp3 Complex
 gi|258588744|pdb|3IX8|B Chain B, Lasr-Tp3 Complex
 gi|258588745|pdb|3IX8|C Chain C, Lasr-Tp3 Complex
 gi|258588746|pdb|3IX8|D Chain D, Lasr-Tp3 Complex
 gi|261278836|pdb|3JPU|A Chain A, Lasr-Tp4 Complex
 gi|261278837|pdb|3JPU|B Chain B, Lasr-Tp4 Complex
 gi|261278838|pdb|3JPU|C Chain C, Lasr-Tp4 Complex
 gi|261278839|pdb|3JPU|D Chain D, Lasr-Tp4 Complex
 gi|261278840|pdb|3JPU|E Chain E, Lasr-Tp4 Complex
          Length = 173

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 11/174 (6%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  ++SS   E S  L  + + +                 +  +    + NY   
Sbjct: 3   LVDGFLELERSSGKLEWSAILQKMASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 59

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +  +       D  + H    +LPI W   +                       G+  
Sbjct: 60  WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTM 116

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
           P+     + G +  +     +  E   EA+     V+     L      +   L
Sbjct: 117 PLHGARGELGALSLS-----VEAENRAEANRFMESVLPTLWMLKDYALQSGAGL 165


>gi|308235093|ref|ZP_07665830.1| transcriptional regulator, LuxR family protein [Gardnerella
           vaginalis ATCC 14018]
 gi|311115228|ref|YP_003986449.1| hypothetical protein HMPREF0421_21344 [Gardnerella vaginalis ATCC
           14019]
 gi|310946722|gb|ADP39426.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 246

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
             F+ L K RS +   L  +E   + L   GYT+ +IA +LGL  +T+N ++     KL 
Sbjct: 145 ESFIRLSKSRSRSV--LPPQELKIMDLLAKGYTTNQIASQLGLMPNTINTHIHRIYKKLH 202

Query: 218 AVNRIQAI 225
             NR+QAI
Sbjct: 203 VSNRVQAI 210


>gi|226364726|ref|YP_002782508.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243215|dbj|BAH53563.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 230

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 15/207 (7%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           + S L    R++    +     D  ++P+ + E   D  L       +  I  +    +V
Sbjct: 17  VRSGLRRILRRKDGFVIVGECADGSEVPDAVAEHTPDVVLMDLRMKRVDGIEATRALRSV 76

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--- 154
                 L +         +G      L     G+++  S    L   V   A G      
Sbjct: 77  AAPPPVLVLTTFDDDDLLSG-----SLRAGAAGFILKDSPAEDLIRAVRTVAEGGACLDP 131

Query: 155 QVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            V    L  ++  + +          LT RE   L L G G+++ EI  +LG+S  TV +
Sbjct: 132 AVTGRVLATYRTVAPSTDGERNRLTELTARELDVLALIGRGHSNSEIGRELGISGVTVKS 191

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++G   +KLD  +R  AI  A   G +
Sbjct: 192 HVGHIFLKLDLRDRAAAIVYAFDHGIV 218


>gi|225872721|ref|YP_002754178.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794134|gb|ACO34224.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 203

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +         +       +VI   L      S     LTERE   L  AG+G  S++IA 
Sbjct: 107 DRPAAELADAVRRVHQGLRVIDPQLAADAWESGP-DPLTERERQILWRAGEGKASQDIAA 165

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LS  TV  YL  A  KL A NR+ A   A   G++
Sbjct: 166 ELHLSEGTVRNYLSEAISKLGAANRVDAARIARSKGWL 203


>gi|223940647|ref|ZP_03632489.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890693|gb|EEF57212.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 243

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +VI  F    K  +  A  L+ RE   L+L   GY+++ IA+KL LS+ TV ++L  
Sbjct: 154 IARRVIESFRRKAKNPNEYAH-LSMREEQILRLLSQGYSNKLIADKLELSIDTVCSHLKR 212

Query: 212 ATVKLDAVNRIQAIAKAIR 230
              KL   +R +A+ + + 
Sbjct: 213 VFEKLHVSSRTEAVVRYME 231


>gi|313675451|ref|YP_004053447.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312942149|gb|ADR21339.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 213

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   +QL   G T++EIA+K+ LSV T+  +  +   KL+  N    IA A    
Sbjct: 153 KLSRREIEIIQLLKKGLTNQEIADKIFLSVLTIQTHRKNIIQKLEVNNSAGLIAFAHEHN 212

Query: 233 Y 233
            
Sbjct: 213 I 213


>gi|289208492|ref|YP_003460558.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288944123|gb|ADC71822.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp.
           K90mix]
          Length = 204

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 148 EAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +      + +        +       NLT RE         G  ++EIA +LG++  TV 
Sbjct: 113 DLMTRMIRTVRSAQPRDPETPPEGFENLTPREREVALAVTTGAHNKEIARQLGMTERTVK 172

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231
            +LGS   KL+  +R+Q +    R 
Sbjct: 173 MHLGSVFKKLNVDDRVQLVLHLTRL 197


>gi|94314741|ref|YP_587950.1| LuxR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358593|gb|ABF12681.1| Transcriptional regulator, LuxR family, ATP-dependent [Cupriavidus
           metallidurans CH34]
          Length = 914

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + ++ A  LT RE   LQ+   G+ +  IAEK+ +S  T+ ++L     KL A +R +A+
Sbjct: 845 RGAAIAEPLTTREQEVLQMLAAGHRNRVIAEKMFVSELTIKSHLRKINAKLGAQSRTEAV 904

Query: 226 AKAIRFGYI 234
           A     G +
Sbjct: 905 AIGRSLGLL 913


>gi|329945873|ref|ZP_08293560.1| putative oxygen regulatory protein NreC [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328528321|gb|EGF55299.1| putative oxygen regulatory protein NreC [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 237

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E A +L +SV TV  ++ +   KL   NR +    A+  
Sbjct: 175 DRLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVAR 234

Query: 232 GYI 234
             +
Sbjct: 235 RIV 237


>gi|331694132|ref|YP_004330371.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326948821|gb|AEA22518.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 524

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 139 LMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
              A + ++ A  A           V+       ++R +    L+ RE   L L   G +
Sbjct: 415 EPAAAQTLLRADAAAGRLDGEAVNAVLAAAGHRVRRRPALPAGLSPREAQVLGLVARGLS 474

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  IA +L L+  TV +++     K+    R  A   A+R G +
Sbjct: 475 NRAIAAELSLAPRTVGSHVEHVYTKIGVSTRGAAAMFAMRHGLV 518


>gi|325527140|gb|EGD04544.1| two-component regulatory system response regulator protein
           [Burkholderia sp. TJI49]
          Length = 184

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 68  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 127

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 128 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 181


>gi|269128529|ref|YP_003301899.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268313487|gb|ACY99861.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 160

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V        +V      L  +  V  +        + D ++     +++A  LT RE   
Sbjct: 43  VDRDDPDRDFVEAARAVLAGSGWVSPQLAPRMLATLRDGIDSAAGLTASATALTAREQDV 102

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            +L   G T+ EIA +L ++V TV  ++ +   K+   +R Q IA A+  G
Sbjct: 103 ARLMSSGLTNSEIARELQVAVSTVKFHVSNVLRKMGCRDRAQLIA-ALHRG 152


>gi|121535101|ref|ZP_01666918.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121306351|gb|EAX47276.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 190

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L+    GY+  EIA+ L +SV TV+ +      KL    + Q +  A++ G 
Sbjct: 124 LSFREREVLKYMVRGYSLSEIAKMLCISVKTVDTHKTRIMNKLGYTEKSQLVEYALKHGL 183

Query: 234 I 234
           +
Sbjct: 184 L 184


>gi|194364036|ref|YP_002026646.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194346840|gb|ACF49963.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 200

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
               E + +A     Q I     +L     S A  LT+RE   L+LAG+G T+ EIAE+L
Sbjct: 105 DAPAENLADALRKVKQGIRAIDPQLALDAWSQADPLTDRERRVLRLAGEGRTASEIAEQL 164

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           GLS  TV  YL     KL   NRI+A   A + G++
Sbjct: 165 GLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|114706025|ref|ZP_01438928.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
 gi|114538871|gb|EAU41992.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
          Length = 223

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   ++   +G  ++ IA +L +S  TV  Y+     KL+A NR++ + +A R G 
Sbjct: 151 LSLREEQIIRFLSEGLPNKTIAIRLNISEKTVKHYMTGLIQKLEARNRLEVVMRAQRMGL 210

Query: 234 I 234
           +
Sbjct: 211 L 211


>gi|76819404|ref|YP_337615.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|124382862|ref|YP_001024446.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|167819353|ref|ZP_02451033.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167922362|ref|ZP_02509453.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217419136|ref|ZP_03450643.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
 gi|238561397|ref|ZP_00442049.2| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
 gi|254174619|ref|ZP_04881281.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|254189951|ref|ZP_04896460.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254200827|ref|ZP_04907192.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|254204796|ref|ZP_04911149.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|254263076|ref|ZP_04953941.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
 gi|254300219|ref|ZP_04967665.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           406e]
 gi|254357045|ref|ZP_04973320.1| transcriptional regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|76583877|gb|ABA53351.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710b]
 gi|124290882|gb|ABN00152.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10229]
 gi|147748439|gb|EDK55514.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|147754382|gb|EDK61446.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|148026072|gb|EDK84195.1| transcriptional regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|157810043|gb|EDO87213.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           406e]
 gi|157937628|gb|EDO93298.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160695665|gb|EDP85635.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|217398440|gb|EEC38455.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
 gi|238524614|gb|EEP88046.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
 gi|254214078|gb|EET03463.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
          Length = 273

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 45  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 97  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 +       +          +   L   +  +R + 
Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268


>gi|53726081|ref|YP_103403.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121601196|ref|YP_992504.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124385129|ref|YP_001026695.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126450323|ref|YP_001080022.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|167000332|ref|ZP_02266150.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254175606|ref|ZP_04882266.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254202076|ref|ZP_04908439.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254207407|ref|ZP_04913757.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254359829|ref|ZP_04976099.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52429504|gb|AAU50097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121230006|gb|ABM52524.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124293149|gb|ABN02418.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126243193|gb|ABO06286.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147746323|gb|EDK53400.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147751301|gb|EDK58368.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148029069|gb|EDK86974.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|160696650|gb|EDP86620.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|243063667|gb|EES45853.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 279

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++     +  L     G L   +    P  L       V+   
Sbjct: 63  LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRTLEMVLLGG 119

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 120 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|311900038|dbj|BAJ32446.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 214

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++  +    LA  +   A G           L  +  +   +L+ RE   LQL 
Sbjct: 101 AGATGYLLKDAPPEDLAAAIHATARGETVLAPPVAARLLGRVRAGRPSLSPREAEILQLL 160

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
            +G  + +I+++L +S  TV  +L     KL   +R 
Sbjct: 161 AEGLPNRQISKRLFISEATVKTHLVHIYDKLGVDSRT 197


>gi|289641751|ref|ZP_06473909.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289508395|gb|EFD29336.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 422

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT RE   L+   DG T+  IA +L +S  TV  ++     KL A NR +A+++
Sbjct: 344 PLTRREIEVLRHMADGATNARIATRLMVSEGTVKVHVKHILRKLGATNRAEAVSR 398


>gi|228990002|ref|ZP_04149975.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228769668|gb|EEM18258.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 201

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLML--ANEVIIEAHGAC----YQVITDFLELFKKRSSAARN 173
             + +    +GYV   +    L  A + +++ +          +   L+   +  +    
Sbjct: 78  VTLIMNAGASGYVPKAAVDEELYTAIDSVMDGYLYLRPKEISTMLKRLQNETESRNPYVI 137

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   LQ    G++  EIA++L +S+ TV+ +      KL+   + + +  AI++  
Sbjct: 138 LSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRMLNKLNLSKKSELVQYAIKYNL 197

Query: 234 I 234
           I
Sbjct: 198 I 198


>gi|227819439|ref|YP_002823410.1| two-component system response regulator [Sinorhizobium fredii
           NGR234]
 gi|227338438|gb|ACP22657.1| putative two-component system response regulator [Sinorhizobium
           fredii NGR234]
          Length = 226

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 37/79 (46%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             I    +   +R S  + LT RE    +LA +G  S EIA +LG++  TV  +L S   
Sbjct: 145 AAIERIGKRDVERRSVMQKLTPRELEISRLAAEGLRSREIAARLGITPGTVKLHLHSVYS 204

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KLD   R++    + R   
Sbjct: 205 KLDITTRVELANISQRLQL 223


>gi|162148610|ref|YP_001603071.1| LuxR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787187|emb|CAP56780.1| putative transcriptional Regulator, LuxR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 298

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 32/234 (13%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTIN-SALDFPRRQQLICELHNYDLDSGDIPN 66
             +S+++ +L   L  I    +A +F    ++   L    R +L  +      +  D P 
Sbjct: 75  ISESTTISQLERILERIIETFRALSFNYTLVDSFDLSQAVRNRLHLDAGAALHELLDEPP 134

Query: 67  -ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
             L     D                               +     L     +   V   
Sbjct: 135 YELSSARRDPSYK------------------------PPFLPQVHRLGEIDLVHLSVSTF 170

Query: 126 FHKNGYVIFT-SEFLMLANEVI----IEAHGACYQVITDFLELFKKRSSAARN-LTERET 179
             + G +     + +  ++  +     +       +    L +    ++     L +RE 
Sbjct: 171 LGECGDIKMAWGQDIARSSRELQRDIRDLVTISLHLHDATLCILGGATAPRDRYLPKREA 230

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            CL LA  G+   E A++L +S   V  YL +A   L A N  QA+A+A+  G 
Sbjct: 231 ECLYLASMGFQGRETAKELHISEAAVRLYLTNARRHLAARNTTQAVARALVRGL 284


>gi|311745433|ref|ZP_07719218.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
 gi|126577983|gb|EAZ82203.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
          Length = 208

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   ++L  DG  ++EIA+ L LSV T+  +  +   KL   +RI+ + K     
Sbjct: 148 KLSRREVQIIKLIKDGMQNKEIADDLSLSVQTIETHRKNIHSKLHVSSRIELVNKVQDMN 207

Query: 233 Y 233
            
Sbjct: 208 L 208


>gi|90425528|ref|YP_533898.1| response regulator FixJ [Rhodopseudomonas palustris BisB18]
 gi|90107542|gb|ABD89579.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 205

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +  + ++    L+ RE   +     G +++ IA +  +S  T+  Y  +   K+ A + 
Sbjct: 131 AIAPEIAARIETLSPRERQVMDGLVAGLSNKVIAREFDISPRTIEVYRANVMTKMQAGSL 190

Query: 222 IQAIAKAIRFG 232
            + +  AIR G
Sbjct: 191 SELVRMAIRGG 201


>gi|302206769|gb|ADL11111.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis C231]
 gi|308277014|gb|ADO26913.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis I19]
          Length = 208

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE    +L   G T++EIA +L +S+ TV  ++     +LD  NR++  A   R G
Sbjct: 145 PLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRVEIAAALWRSG 204


>gi|239813574|ref|YP_002942484.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239800151|gb|ACS17218.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 227

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LTER+   LQL   G  ++ I   LG+S  TV  +L +    L+  NR +A+  A   
Sbjct: 164 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAAQAL 221


>gi|30316455|gb|AAP31397.1| hypothetical two-components response regulator protein [Pseudomonas
           putida]
          Length = 217

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A   LT R+   L+L   G T++EIA+ L +S  TV  ++ S    L   +R  A  K
Sbjct: 156 AVEQLTHRQQEVLRLIAQGKTNKEIAKALSISPFTVRIHVSSLLKLLGVSSRTAAAVK 213


>gi|307292632|ref|ZP_07572478.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306880698|gb|EFN11914.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 212

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDG 188
           G V F S+   L+      A       +                +LT  +   L    +G
Sbjct: 104 GAVGFLSKDSDLSVIETAIARALSGHRLPPAPPRPEDAVQKEVASLTPTQLKVLLEVLNG 163

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             +++IA  L +S  TV A++ +   KLD  NR QA   A   G 
Sbjct: 164 KLNKQIAHDLMMSEATVKAHMTAIMRKLDVQNRTQAALVARSLGL 208


>gi|300788195|ref|YP_003768486.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797709|gb|ADJ48084.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 5/128 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKK 166
           +       AG            G V   ++   +L+               +D  E  + 
Sbjct: 91  IRALRAGAAGFLVKSTPPEDLIGLVRVAADGHTVLSPSAARRLVALS----SDSRERGED 146

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                  LTERE   L   G G ++ +IA +L L+  TV +Y+    VKLD  NR QA  
Sbjct: 147 ARRRTAGLTERERDVLACLGSGLSNADIAARLHLAEATVKSYVSRMLVKLDCANRTQAGL 206

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 207 LAHEAGLV 214


>gi|294509070|ref|YP_003565959.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM
           B1551]
 gi|294352374|gb|ADE72696.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM
           B1551]
          Length = 202

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E   L L     T+ EI+  L +S  TV  ++ S   KLD  +R+ A+ K I+ 
Sbjct: 137 ETLTSAEQKILLLISKDKTNYEISMDLSISKRTVEYHISSIIRKLDVDSRVGAVVKGIKK 196

Query: 232 GYI 234
           G I
Sbjct: 197 GLI 199


>gi|163755753|ref|ZP_02162871.1| phosphoglyceromutase [Kordia algicida OT-1]
 gi|161324274|gb|EDP95605.1| phosphoglyceromutase [Kordia algicida OT-1]
          Length = 225

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L+L     T++EI E+L ++  TV  +  +  +K +A N    +  AI+  Y
Sbjct: 157 LTEREIEVLKLICFQKTAKEIGEQLFITPRTVEGHKSNLFIKTEARNIAGLVIYAIQNNY 216

Query: 234 I 234
           I
Sbjct: 217 I 217


>gi|197123919|ref|YP_002135870.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220918688|ref|YP_002493992.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|196173768|gb|ACG74741.1| transcriptional regulator, LuxR family [Anaeromyxobacter sp. K]
 gi|219956542|gb|ACL66926.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 178

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               ++ A  LT+RE     L  DG  S E+AE+LG++  TV ++L +   KL   NR++
Sbjct: 111 ETPTATPADGLTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVE 170

Query: 224 AIAKAIRF 231
              + ++ 
Sbjct: 171 LARRLVQH 178


>gi|120401374|ref|YP_951203.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954192|gb|ABM11197.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 392

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LTERE     L   G +++EIA++L ++  TV +++     K  AVNR QAIA A+
Sbjct: 330 PPVTLTEREADVFDLMVTGASNQEIADRLVITEGTVKSHVKHILRKYGAVNRAQAIAWAL 389

Query: 230 RFG 232
             G
Sbjct: 390 NGG 392


>gi|91789053|ref|YP_550005.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698278|gb|ABE45107.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 895

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
              A+ +  +   A  + +   +    + +     LT RE   L L  +G  + EIAE+L
Sbjct: 792 RPAADGLRRQLRAAGLRGLPRGMRPSTQTNP--HQLTAREIEVLLLLCEGLKNSEIAERL 849

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             SV TV+ +L +   KL   +R +A+A A+  G 
Sbjct: 850 CRSVRTVDHHLAAVFTKLGVASRTEAVAAALHAGI 884


>gi|327405216|ref|YP_004346054.1| LuxR family transcriptional regulator [Fluviicola taffensis DSM
           16823]
 gi|327320724|gb|AEA45216.1| transcriptional regulator, LuxR family [Fluviicola taffensis DSM
           16823]
          Length = 259

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 35/68 (51%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R SA   LTERE   L+L   G T  +IA+K+ ++  TV  Y      +L   N ++A+A
Sbjct: 192 RKSAKPTLTEREIEILRLHAQGLTINQIADKIFVAPDTVKYYRRRIFERLSVTNIVEALA 251

Query: 227 KAIRFGYI 234
            A+    I
Sbjct: 252 YAVNSKII 259


>gi|309812367|ref|ZP_07706122.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
 gi|308433672|gb|EFP57549.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
          Length = 237

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               V+             A  LT RE+  L++   G  S++IA +LGLS  TV+ ++ +
Sbjct: 155 LAGLVLAHLRGRVDTTDDPASALTPRESEVLRMVAKGLASKQIASRLGLSSRTVDNHVAA 214

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL   NR++    A+  G 
Sbjct: 215 TLRKLHLANRVELTRFALENGL 236


>gi|224826787|ref|ZP_03699887.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224601007|gb|EEG07190.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 215

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                  L      +  +  LT++E +       G++  E+AE+L LS  TV  +L    
Sbjct: 133 QLAQQVALAQLGGAADPSEALTDKEFAIFLQLAQGHSVNEVAEELHLSPSTVGTHLYHIK 192

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL+  N  +    A+R G I
Sbjct: 193 QKLNVQNAAELALIAVRCGLI 213


>gi|119775008|ref|YP_927748.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767508|gb|ABM00079.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 215

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
             ++   L   +   S    LT R+   LQL  +GY++ +IAE + +S+ TV  +     
Sbjct: 134 ISLLEQLLSTNQSAPSLLELLTNRQKQILQLIAEGYSTRQIAESISVSIKTVETHRAHIM 193

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            +L   +    +  A++   I
Sbjct: 194 ARLQIFDIAGLVRFALQEKLI 214


>gi|120600427|ref|YP_965001.1| response regulator receiver protein [Shewanella sp. W3-18-1]
 gi|120560520|gb|ABM26447.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
 gi|319424869|gb|ADV52943.1| two component transciptional regulator for
           thiosulfate/tetrathionate response, TtrR [Shewanella
           putrefaciens 200]
          Length = 200

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               A  +   + L  F+K+S       LTERE   L     G T+++I+E + LS+ T+
Sbjct: 111 ALVQAIEKAQCESLATFEKQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170

Query: 206 NAYLGSATVKLDAVNRIQAI 225
             +      KL+  N  + +
Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190


>gi|330830262|ref|YP_004393214.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Aeromonas veronii B565]
 gi|328805398|gb|AEB50597.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Aeromonas veronii B565]
          Length = 196

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 142 ANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           + + +I A     Q           K  SS+   LT RE    QL   G   + IAE+LG
Sbjct: 104 SPDELIAAVRTAAQGGCYLTPDIAQKLASSSRDPLTNREREIAQLLAQGLEVKAIAEQLG 163

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LS  TV+ +  +   KL   N ++   +
Sbjct: 164 LSPKTVHVHRANLMDKLKVSNNVELAHR 191


>gi|258653704|ref|YP_003202860.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556929|gb|ACV79871.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 229

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                      +   +L+ RE   ++L  DG +++ I ++L LS  TV ++L     KL 
Sbjct: 152 RRANPSAAAIPATIHDLSSREIEVIRLVADGRSNKWIGDQLSLSALTVKSHLARIGRKLG 211

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R   +A A+R G I
Sbjct: 212 TGDRAHMVALAMRAGVI 228


>gi|239941299|ref|ZP_04693236.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239987762|ref|ZP_04708426.1| two component system response regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291444739|ref|ZP_06584129.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347686|gb|EFE74590.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           + A     +VI +F  L    ++ A  L   T RE   + L   G ++EEI   L +S  
Sbjct: 127 LLAPAVTRRVIEEFARLKAPEAAGAERLAVLTGREREVMALVAAGLSNEEIGRALIMSPL 186

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T   ++     KL A +R Q +  A   G +
Sbjct: 187 TAKTHVSRTMTKLGARDRAQLVVMAYETGLV 217


>gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 221

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 19/219 (8%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +    L ++ + +    + +       SAL+  +R++    L +  +   D       
Sbjct: 16  VDDTPDNLAMLSDALDDAGYMVLVALDGLSALNRVQRRRPDLILLDAMMPGLDGFETCRR 75

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
                      S  +P+++ +   +T     G               +  P++       
Sbjct: 76  LKAQP-----ASADIPVVFMTGLTDTRHVVQGFEV-------GGSDYVTKPIQTDE---- 119

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
            +   +  L  +  ++         V+T   E   +  SA   LTERE   L+    G T
Sbjct: 120 VLARVAAHLRTSRILLSAREAQQPSVLTLEDEPAHRLLSARFQLTEREVEVLRWVACGKT 179

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           + +I + LGLS  TVN +L    VKL    R  A + A+
Sbjct: 180 NRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218


>gi|281419799|ref|ZP_06250798.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
 gi|281406175|gb|EFB36855.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
          Length = 209

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 9/160 (5%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH---KNGYVIF 134
            +  +     +   +    V+E     +       +    +  P         +   +  
Sbjct: 51  QYEANNPDHFVHSFVSMHIVLEHRYFFTQGNRNRHVI---VLTPSNDPNSQLAEFHCLCV 107

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                 L  +++   H        + +      +   + L++RE   L L   G  ++EI
Sbjct: 108 NVPEGYLIKDLLNLQH--SGHPHGEHIPAMPPVT-QEKVLSDREIEVLSLVAQGKINKEI 164

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++L + + TV  +      KL   +       A+  G++
Sbjct: 165 ADQLCIGLTTVITHRKKIQEKLGLKSVSSLTIYAVMHGFV 204


>gi|149203303|ref|ZP_01880273.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149143136|gb|EDM31175.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 240

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT ++   LQL  +G  +++IA +L ++  TV  ++ +   KL    R QA+  A
Sbjct: 173 LTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227


>gi|159043020|ref|YP_001531814.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157910780|gb|ABV92213.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 239

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +        LT ++   ++L   G  ++EIA +L L+  TV A++ +   +L A NR 
Sbjct: 154 AAEFDHPKLAELTPQQQRIMRLICKGKPNKEIAYELSLAEATVKAHITALLRRLGARNRT 213

Query: 223 QAI-----AKAIRFG 232
           +A+     A A + G
Sbjct: 214 EAVVVVEEAMAAQRG 228


>gi|326330390|ref|ZP_08196699.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|326330395|ref|ZP_08196703.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951670|gb|EGD43702.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951816|gb|EGD43847.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 363

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               LT RE   L+L   G T+  IA +L +S  TV +++     KL AVNR QAIA+
Sbjct: 300 TEEPLTSRERDVLELMAVGATNPMIASELVISASTVKSHVRHILRKLGAVNRAQAIAR 357


>gi|239918649|ref|YP_002958207.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415136|ref|ZP_06246878.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839856|gb|ACS31653.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 222

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 39/99 (39%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
               + +  V  E      Q             +    LT RE   +     G ++ EIA
Sbjct: 120 RGDAVFSPRVARELIETVTQQSERRESAAAHALTELEELTPRELEVVTELAKGSSNAEIA 179

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + L L+  TV ++LG    K  A +R+Q + +A R G +
Sbjct: 180 QALFLAEATVKSHLGKIMDKWQARDRVQVLIRASRAGLV 218


>gi|271968550|ref|YP_003342746.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511725|gb|ACZ90003.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 201

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+LA  G  S EIA++L LSV TV  ++     K  A NR+ A+  A   G
Sbjct: 140 PLTRRELDVLRLAAQGARSNEIADQLFLSVGTVRNHMSRIMCKTHARNRLDAVRIASDSG 199

Query: 233 YI 234
           ++
Sbjct: 200 WL 201


>gi|254443862|ref|ZP_05057338.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198258170|gb|EDY82478.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 220

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIA+ LGLS+ TV ++  + + KL   +       A+R 
Sbjct: 156 ETLSDREKQIVVFVASGMTNKEIAQNLGLSIKTVESHRSNISKKLKIFDIAGVTLFAVRT 215

Query: 232 GYI 234
           G +
Sbjct: 216 GLV 218


>gi|254389329|ref|ZP_05004557.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197703044|gb|EDY48856.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 16/234 (6%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           S    + ++   +  +   +    +  +     ++    A      Q       +  LD 
Sbjct: 114 SGPVSSVRELRGIDAVQTCVEKACHECR-EEIQVFVPGGA------QPGDVLASSQPLDL 166

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +      +Y             P   +     E   E      + L   +        
Sbjct: 167 LLLERSARVSY---VYQGSIRNDRPTSEYAQWLVEQGAEVRTVPHLPLRVIIWDRRTALV 223

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P+       G  + +S   + A + + E                ++       L ++E++
Sbjct: 224 PIDPAAPDAGAFLLSSPGPVAALQSLFEQVWQRAARFG-----EERDRERDGALADQESA 278

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L   G T E IA KLG+SV T      +   +L A +R Q  A A   G++
Sbjct: 279 VLGLLAAGLTDEVIARKLGVSVRTSRRVTAALMNRLGARSRFQLGALAAERGWL 332


>gi|134101976|ref|YP_001107637.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008994|ref|ZP_06566967.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914599|emb|CAM04712.1| transcriptional regulator, LuxR family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 943

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 18/129 (13%)

Query: 121 PVRLGFHKNGYVIFTSEF------------------LMLANEVIIEAHGACYQVITDFLE 162
           PV     ++  V+F                      L  + +++          +     
Sbjct: 797 PVHAQALEDAAVLFARRRDLGAARAAYVEATRIYAELGASWDLLRADARLRPHGMRRLRG 856

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                ++    LT  E     L  DG+++ +IA +L  S  TV A++     KL   +R+
Sbjct: 857 RRANAATGWEALTPAELQVAWLVSDGHSNADIAARLFSSKRTVEAHVSRILAKLGVRSRV 916

Query: 223 QAIAKAIRF 231
           +   +A R 
Sbjct: 917 EIAIEATRH 925


>gi|148553426|ref|YP_001261008.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148498616|gb|ABQ66870.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 861

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 150 HGACYQVITDFLELFKK----------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           H    +      EL ++          R +    L+ RE   L     G +++  AE+L 
Sbjct: 766 HALGPEASRFLAELSERLGQSYEHVIDRDAGGSYLSAREREILLSLAQGESNKSTAERLN 825

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TV  +L     KL A NR++AIA A + G +
Sbjct: 826 VSEATVKFHLQRIYRKLGAHNRVKAIAVAQQQGLL 860


>gi|170725332|ref|YP_001759358.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169810679|gb|ACA85263.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 209

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE-------AHGAC 153
              L    +    +   V         +I              ++++E        H   
Sbjct: 69  LNALRQEGVTSRIVILTVSDAKQDVIRIIRAGADGYLLKDTEPDLLLEKLKNAMQGHRVI 128

Query: 154 YQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            + + ++L   K  +       NLT RE   L+   +G ++  I+E L +S  TV  ++ 
Sbjct: 129 SESVEEYLYELKDAADEDDWLSNLTPRELQILEQVAEGKSNRMISELLHISEGTVKVHVK 188

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K  A +R +   +
Sbjct: 189 NLLRKGHAKSRTEMAVR 205


>gi|88797788|ref|ZP_01113376.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Reinekea sp. MED297]
 gi|88779465|gb|EAR10652.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Reinekea sp. MED297]
          Length = 211

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            EL ++R      LT R+ + LQ    G ++ EIA+ L LS +T+  +      KL   N
Sbjct: 139 RELAERREENID-LTGRQHAILQQMQTGLSTSEIAQALNLSPNTIKTHTRLMYGKLGVSN 197

Query: 221 RIQAIAKAIRFGYI 234
           R + + +A   G I
Sbjct: 198 RTECLNRAAELGLI 211


>gi|332530099|ref|ZP_08406049.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332040572|gb|EGI76948.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 224

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ RE + L+L   G++  EIA    +SVHTV  ++ +   KL   +R +A+ +A R
Sbjct: 158 APALSAREQAVLELIARGFSYAEIARLQEISVHTVQTHIKNLYQKLAVHSRGEAVFEATR 217

Query: 231 FGYI 234
            G +
Sbjct: 218 MGLL 221


>gi|258625963|ref|ZP_05720829.1| Glycerol metabolism activator [Vibrio mimicus VM603]
 gi|258581754|gb|EEW06637.1| Glycerol metabolism activator [Vibrio mimicus VM603]
          Length = 222

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 16/124 (12%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------- 169
           +   +  G           + +  A   I+        +  D L    K           
Sbjct: 91  VLQTLAYGAVGYVAKSCARQQMGEAFAQILRGD---VYLPADILRENVKTPPNHSLRNQA 147

Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                  + LT ++   LQ    G  +++IA  L +S  TV +++ +   KL   NRIQA
Sbjct: 148 GFSAETLQTLTRKQLQVLQSMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQA 207

Query: 225 IAKA 228
           +  A
Sbjct: 208 VLGA 211


>gi|254819266|ref|ZP_05224267.1| regulatory protein, LuxR [Mycobacterium intracellulare ATCC 13950]
          Length = 1082

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 7/142 (4%)

Query: 90   QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149
              +   +          R       +      +R G  +N +    +E   L+ E     
Sbjct: 947  ARLLGASAAIRERMGHARFALYREGYDSAVAAIREGLGQNAFDAAWAEGAALSTEE---- 1002

Query: 150  HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                           K+ SS   +LT  E   ++L  +G  ++EI  +L +S  TV  +L
Sbjct: 1003 ---AIAYAQRGRGERKRPSSGWESLTPMENDVVRLVREGLGNKEIGARLFISPRTVQTHL 1059

Query: 210  GSATVKLDAVNRIQAIAKAIRF 231
                 KL   +R+Q + +A R 
Sbjct: 1060 THVYSKLGLTSRVQLVQEAGRR 1081


>gi|253998423|ref|YP_003050486.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200498|ref|YP_004039156.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985102|gb|ACT49959.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439814|gb|ADQ83920.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 314

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
              AG+  P       +G +IFT   +   ++ +I  H        D L           
Sbjct: 200 GGIAGLNKPTLTIPQGSGRLIFTLVEIDNDDQWVILLHEESDAAKIDALM-------TTF 252

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            LT RE+  L  A  G T+ +I + LG S  T+N +L     KL    R  A A A 
Sbjct: 253 KLTRRESEVLYWAMQGKTNRDIGDILGTSPRTINKHLEHVFTKLGVETRTAASALAR 309


>gi|228472164|ref|ZP_04056930.1| transcriptional regulator, LuxR family [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276367|gb|EEK15091.1| transcriptional regulator, LuxR family [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 216

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 1/151 (0%)

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135
            +   +  +   +  +++EE  +       +R+         I     L F  + ++   
Sbjct: 67  VVRRIDKKVWEFL-DTLREEEKLTYKYIYEMRVLDRGKYVRMIYQMRMLAFKDDNFLGMG 125

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
              L                 +TD +  F   ++    LT RE   L LA +G  S+EI+
Sbjct: 126 IIDLAPEQSANTSVRFQIKNCLTDEIVPFAIETATDTLLTPREREILALAKEGMFSKEIS 185

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           EKL +SVHTVN +  +   KL   N I+AI 
Sbjct: 186 EKLNISVHTVNRHRQNILEKLQVDNMIEAIR 216


>gi|269125139|ref|YP_003298509.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268310097|gb|ACY96471.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 266

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 5/218 (2%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
            R   +Q+ +      L     AL  P                                 
Sbjct: 49  ARTTALQDLVVRSGTGLGGKAMALRRPVTVTDYLHAREISHHYDRPVAREGLHAILAVPL 108

Query: 79  HFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                +  +++  +++     E   +L++ L G +      A   +             +
Sbjct: 109 LTAGQVTGVLYAGLRQRLEFGERMQRLAMSLAGEVRQRMAAAQ--QPPAVHLRLREACRD 166

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIA 195
              +   V   A  A  + +   L    +     AA  L+ RE   L  A  G  + EIA
Sbjct: 167 LERVIARVHDPAVRAELEAVRRRLAAETRPAAPPAAGRLSRREHEALSHAAQGLPNAEIA 226

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++GL+  TV AYL S   KL   NR++A+ +A   GY
Sbjct: 227 ARMGLTPGTVKAYLRSVMRKLGCRNRMEAVNRARALGY 264


>gi|56460314|ref|YP_155595.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56179324|gb|AAV82046.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 207

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI----------TDFLELFK 165
             + F       +   V+       L  +   E      + +              E   
Sbjct: 76  HIVLFTRPRSISEVRQVLAAGVRSYLPKDSSAEQAKLAIRALLNGDRHIPDDPHLNEPRD 135

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           K S A   L+ R+   +QL   G +++EIA  LG++  T+  +L +    +   NR +A 
Sbjct: 136 KSSGAESFLSPRQLEIMQLLAQGLSNKEIANILGITEGTIRVHLSAIFKAIKVSNRTEAT 195

Query: 226 AK 227
             
Sbjct: 196 LW 197


>gi|24374189|ref|NP_718232.1| LuxR family DNA-binding response regulator [Shewanella oneidensis
           MR-1]
 gi|24348702|gb|AAN55676.1|AE015706_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis
           MR-1]
          Length = 220

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K +S   +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA
Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 225 IA 226
           + 
Sbjct: 206 VI 207


>gi|89075340|ref|ZP_01161762.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium sp. SKA34]
 gi|89048889|gb|EAR54458.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium sp. SKA34]
          Length = 209

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 124 LGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
                 G++  +S+   L + +  +++      + I D    ++  +     LT ++   
Sbjct: 98  HSHGAFGFIPKSSDMRALISALNQVLDGEPFFPEDIADNNRAYRDLADKIATLTPQQYKV 157

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +  DG  +++IA +L +S  T+ A++ +   KL+  NR QA+    +   
Sbjct: 158 LGMLSDGLLNKQIAYELTVSEATIKAHMTAIFRKLEVKNRTQAVILLQQLDL 209


>gi|219669440|ref|YP_002459875.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219539700|gb|ACL21439.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 204

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            ++E      + +   L     + ++A +LT RE    Q+   GYT++EIA++L +S +T
Sbjct: 119 EVMEGKYRLSEALGSLLFERLVKKNSADDLTAREKIIYQMMRKGYTNKEIAKQLSISTNT 178

Query: 205 VNAYLGSATVKLDAVNR 221
              ++ S   KL+  +R
Sbjct: 179 ARNHVSSIMHKLNISSR 195


>gi|116620395|ref|YP_822551.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223557|gb|ABJ82266.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 200

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL  +  + A  LT+RE   L+ AG+G +  EIA  L LS  TV  YL  A  KL A NR
Sbjct: 128 ELAAEAWTEADPLTDRERQVLRHAGEGRSGAEIAGLLNLSEGTVRNYLSEAISKLGAANR 187

Query: 222 IQAIAKAIRFGYI 234
            +A   A + G++
Sbjct: 188 TEAARIAHQRGWL 200


>gi|22126326|ref|NP_669749.1| response regulator [Yersinia pestis KIM 10]
 gi|45441347|ref|NP_992886.1| response regulator [Yersinia pestis biovar Microtus str. 91001]
 gi|51596070|ref|YP_070261.1| response regulator [Yersinia pseudotuberculosis IP 32953]
 gi|108807239|ref|YP_651155.1| response regulator [Yersinia pestis Antiqua]
 gi|108812420|ref|YP_648187.1| response regulator [Yersinia pestis Nepal516]
 gi|145598551|ref|YP_001162627.1| response regulator [Yersinia pestis Pestoides F]
 gi|149366189|ref|ZP_01888224.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|153947332|ref|YP_001401222.1| response regulator [Yersinia pseudotuberculosis IP 31758]
 gi|162420825|ref|YP_001606521.1| response regulator [Yersinia pestis Angola]
 gi|165925942|ref|ZP_02221774.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938744|ref|ZP_02227299.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010891|ref|ZP_02231789.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211175|ref|ZP_02237210.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401001|ref|ZP_02306504.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420257|ref|ZP_02312010.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425765|ref|ZP_02317518.1| response regulator UvrY [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024581|ref|YP_001721086.1| response regulator [Yersinia pseudotuberculosis YPIII]
 gi|186895179|ref|YP_001872291.1| response regulator [Yersinia pseudotuberculosis PB1/+]
 gi|218928984|ref|YP_002346859.1| response regulator [Yersinia pestis CO92]
 gi|229896314|ref|ZP_04511484.1| response regulator protein [Yersinia pestis Pestoides A]
 gi|229897251|ref|ZP_04512407.1| response regulator protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897979|ref|ZP_04513130.1| response regulator protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902791|ref|ZP_04517908.1| response regulator protein [Yersinia pestis Nepal516]
 gi|270486580|ref|ZP_06203654.1| response regulator UvrY [Yersinia pestis KIM D27]
 gi|294503977|ref|YP_003568039.1| response regulator [Yersinia pestis Z176003]
 gi|21959306|gb|AAM86000.1|AE013847_10 putative 2-component transcriptional regulator [Yersinia pestis KIM
           10]
 gi|45436207|gb|AAS61763.1| response regulator protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589352|emb|CAH20974.1| response regulator protein [Yersinia pseudotuberculosis IP 32953]
 gi|108776068|gb|ABG18587.1| response regulator protein [Yersinia pestis Nepal516]
 gi|108779152|gb|ABG13210.1| response regulator protein [Yersinia pestis Antiqua]
 gi|115347595|emb|CAL20505.1| response regulator protein [Yersinia pestis CO92]
 gi|145210247|gb|ABP39654.1| response regulator protein [Yersinia pestis Pestoides F]
 gi|149292602|gb|EDM42676.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|152958827|gb|ABS46288.1| response regulator UvrY [Yersinia pseudotuberculosis IP 31758]
 gi|162353640|gb|ABX87588.1| response regulator UvrY [Yersinia pestis Angola]
 gi|165913358|gb|EDR31980.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922146|gb|EDR39323.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990235|gb|EDR42536.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166208355|gb|EDR52835.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961952|gb|EDR57973.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049390|gb|EDR60798.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055164|gb|EDR64961.1| response regulator UvrY [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169751115|gb|ACA68633.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186698205|gb|ACC88834.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229680238|gb|EEO76337.1| response regulator protein [Yersinia pestis Nepal516]
 gi|229689020|gb|EEO81085.1| response regulator protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693588|gb|EEO83637.1| response regulator protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701237|gb|EEO89266.1| response regulator protein [Yersinia pestis Pestoides A]
 gi|262361838|gb|ACY58559.1| response regulator [Yersinia pestis D106004]
 gi|262366023|gb|ACY62580.1| response regulator [Yersinia pestis D182038]
 gi|270335084|gb|EFA45861.1| response regulator UvrY [Yersinia pestis KIM D27]
 gi|294354436|gb|ADE64777.1| response regulator [Yersinia pestis Z176003]
 gi|320015393|gb|ADV98964.1| response regulator protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 218

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181
           G           + ++ A  ++          I   + L +    A      L+ERE   
Sbjct: 97  GAGGYLSKGAAPQDVITAIRMVHAGQRYIASDIAQQMALSQLEPPAETPFSCLSERELQI 156

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   G    EI+E+L LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 157 MIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|330809309|ref|YP_004353771.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377417|gb|AEA68767.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 165

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 36/97 (37%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G   F  + +  A            +V+  +         A   LT R+   L L   G 
Sbjct: 52  GADGFIGKNIDPAGIADAIMAIREGEVVVKYQAENAILDDALSQLTARQRQVLGLIAAGK 111

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           T++EIA  LG+S  TV  ++ S    L    R  A A
Sbjct: 112 TNKEIARDLGISPFTVRIHVSSLLKSLGVPTRAAAAA 148


>gi|297203424|ref|ZP_06920821.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148400|gb|EDY61596.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 227

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 32/85 (37%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +   T       +       L +RE       G G ++ EIA  L +SV TV  ++
Sbjct: 132 QLMAHAAGTAADTRRARARERIAALNDREREVAVAVGQGLSNAEIAAALYMSVATVKTHV 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KLD  NR+Q    A   G +
Sbjct: 192 SRVLAKLDLNNRVQIALLAYDAGLL 216


>gi|291514716|emb|CBK63926.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 298

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L     R+     L+ RE   +     G T+++IA+ L +S HTV  +  +   KL  
Sbjct: 209 ERLAAAGPRTVKPEPLSAREKEIIVCVVKGMTNKQIADALCISAHTVITHRRNIAAKLQI 268

Query: 219 VNRIQAIAKAIRFGYI 234
            +       AI    +
Sbjct: 269 HSAAGLTIYAIVNKLV 284


>gi|302867758|ref|YP_003836395.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302570617|gb|ADL46819.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 222

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195
            ++A    + A     +++  + +     + A   L   T RE   L L     ++ EIA
Sbjct: 117 RVVARGEALLAPTVTRRLLDRYADRLPAPAPAGDVLAVLTAREREVLTLTARALSNAEIA 176

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L LS  TV  ++ +   KL   +RIQA+  A   G +
Sbjct: 177 ARLHLSTATVKTHVSAILTKLGLRDRIQAVVLAYDTGLV 215


>gi|237811617|ref|YP_002896068.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|237503468|gb|ACQ95786.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
          Length = 363

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++     +  L     G L   +    P  L       V+   
Sbjct: 147 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 203

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 204 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 263

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 264 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 301


>gi|168802972|ref|ZP_02827979.1| transcriptional regulator, LuxR family protein [Escherichia coli
           O157:H7 str. EC508]
 gi|307314180|ref|ZP_07593790.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|189375230|gb|EDU93646.1| transcriptional regulator, LuxR family protein [Escherichia coli
           O157:H7 str. EC508]
 gi|306906149|gb|EFN36667.1| transcriptional regulator, LuxR family [Escherichia coli W]
          Length = 107

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 30  EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 89

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 90  THLAIRHGL 98


>gi|167586004|ref|ZP_02378392.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 281

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 80/224 (35%), Gaps = 15/224 (6%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           +S  E    L  +  +I  R+ A        D P   Q    L N   D   I     + 
Sbjct: 7   NSDAERRDGLKALLRQID-RHAAY------NDAPDGFQARRLLRNERFDLVAID--WQDV 57

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
                L    +   P     + ++   E+   L      G++P +       L       
Sbjct: 58  GRRSELQALCNACSPSPAAVLIDDATPETVRGLFNCGVTGVIPRSTRP---HLIVRAFEM 114

Query: 132 VIFTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
           V+    +   +A  ++       ++     L     R SA R L+ R+   ++    G T
Sbjct: 115 VLLGGHYIPPIALNLLPSLLVTRHEAHVQELAGTIPRRSATRVLSPRQAQIMRFVHMGNT 174

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ IA  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 175 NKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 216


>gi|241518460|ref|YP_002979088.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862873|gb|ACS60537.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 212

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTE 176
            P+ +   K G V F ++      + +++A          +LE  K  +   +   +LT 
Sbjct: 89  IPMSVKAMKGGAVEFLTK--PFREQDLLDAVHVGLARDRAWLENEKALATVRARFDSLTP 146

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           RE   + L   G  +++IA  LG+S  TV  +      K+   +  +    A
Sbjct: 147 REREVMALVVTGRPNKQIAGDLGVSEITVKVHRSQVMQKMGTRSLPELARMA 198


>gi|153807354|ref|ZP_01960022.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185]
 gi|149129716|gb|EDM20928.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G  ++EIA+KL +S+ TV  +  + T KL   +       A+  GY
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 234 I 234
           I
Sbjct: 195 I 195


>gi|146337183|ref|YP_001202231.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146189989|emb|CAL73981.1| Putative transcriptional regulatory protein,luxR family
           [Bradyrhizobium sp. ORS278]
          Length = 255

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 57/209 (27%), Gaps = 10/209 (4%)

Query: 22  HLIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
             ++  +    F  A   +         +        Y  D         +         
Sbjct: 50  VQLRRFLPFNRFLGAYGRLIGGR----IRMRTLVTSGYPDDFVAGLEESFDLGARGCFAW 105

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
           +       I           +     ++    L   AG    +        Y+ F     
Sbjct: 106 WVQNRTAFILDPADPPPFATARELDEIKQLS-LGVVAGHGV-IDPFASAGTYLSFAGVAA 163

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEK 197
                V +  +     +   FL   +  +       LTER+   + LA  G   + IA +
Sbjct: 164 DQPQHVRMCLNLIAPVLHALFLATEQVAAPRLDLGKLTERQRELVDLALMGLPDKTIASR 223

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LG+S HTV  +      +L    R Q IA
Sbjct: 224 LGISEHTVGNHFRVIYERLGIKKRSQLIA 252


>gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9605]
 gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9605]
          Length = 245

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F       + +       ++     L         + T RE S LQL  +G  ++EI
Sbjct: 146 AARFADTDMGQMAKQITEIRSLLAQAEAL-PSTEPVVHSFTPREASVLQLVAEGLMNKEI 204

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+     K    +R + +  A+    +
Sbjct: 205 ARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|332715487|ref|YP_004442953.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062172|gb|ADY65862.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 492

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKR-----SSAARNLTERETSCLQLAGDGYTSEE 193
           +     V+ +       V+     L +       S++ ++LTERE   L L  DG + +E
Sbjct: 387 IEAIESVMTDTSWFSRTVVERLAGLRQNSRGTTSSASLKDLTEREEQILSLICDGCSDKE 446

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           ++++L LS HT+  ++ S   K+    R  A+  A   G+
Sbjct: 447 MSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWARERGF 486


>gi|259418825|ref|ZP_05742742.1| response regulator receiver protein [Silicibacter sp. TrichCH4B]
 gi|259345047|gb|EEW56901.1| response regulator receiver protein [Silicibacter sp. TrichCH4B]
          Length = 151

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT RE   L    +G  ++ IA +LGLS HTV  ++     KL   NR +A   
Sbjct: 85  RLTTREAQVLSCVAEGKQNKLIANRLGLSEHTVKLHIHHVIAKLGVNNRTEAAVW 139


>gi|163737655|ref|ZP_02145072.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis BS107]
 gi|163740771|ref|ZP_02148164.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161385762|gb|EDQ10138.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161389181|gb|EDQ13533.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis BS107]
          Length = 210

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
               RS   + LT RE     L  +G TS+EIA  LGLS  TV  +      K+   N  
Sbjct: 131 ADLSRSRPYQPLTRREREVYSLLCEGKTSKEIARSLGLSYRTVEVHRARLLKKMGVSNTA 190

Query: 223 QA 224
             
Sbjct: 191 AL 192


>gi|315081981|gb|EFT53957.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
          Length = 206

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 8/150 (5%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-------EFLMLANE 144
           +  E        ++  L    L    +              +          +       
Sbjct: 58  LDIEMPGLDGITVAAELRDQALWCRILIVTTFGRPGYLRRAMDAGVAGFLVKDTPAEDLA 117

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            ++    A  + I   L   +        L+ RE   L+LA  G +   IA +L LSV T
Sbjct: 118 QVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILRLAESGASISLIASELCLSVGT 176

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  ++ SA  K  A NR +A   A R G++
Sbjct: 177 VRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|312196500|ref|YP_004016561.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227836|gb|ADP80691.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 229

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LTERE   L L   G ++ E+AE   LS +TV +Y+ +   K+   +R QA+
Sbjct: 148 DWPGRGEGLTEREAEVLALITQGRSNAELAEITCLSPNTVKSYIRTLYRKIGVTSRSQAV 207

Query: 226 AKAIRFGY 233
              +  G+
Sbjct: 208 LWGVNHGF 215


>gi|297243051|ref|ZP_06926989.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
 gi|296889262|gb|EFH27996.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
          Length = 217

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                L+ +E+  ++L   G +++EIA++L + V TVN +L     KL   +R+QA+A
Sbjct: 151 PKTSVLSPQESEIMRLCKQGSSTKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALA 208


>gi|269793570|ref|YP_003313025.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095755|gb|ACZ20191.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 862

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 10/194 (5%)

Query: 42  LDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF-----LFHFNSGLLPIIWQSIQEET 96
            +F   ++ I  L          P    E  G+       L H ++ ++           
Sbjct: 659 PEFGWWRRAILTLRTRVSAQLGRPEPCPELLGEPRDAMTALRHADAAVVAAAMGDPTTAA 718

Query: 97  VIESSGQLSVRLEGGLLPFAGIA-----FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
            + + G      +G     A I        +  G       +  S   +     +    G
Sbjct: 719 SLVAEGVAIAESQGQAGQKAMIQTAYAEILLAAGEPLEAVNLLRSAREIFDRRDMRLQLG 778

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                +     +  + S     LT RE   L+L   G  + EIAE+L LS  T   ++  
Sbjct: 779 RAQAGLARAEAMLARLSEPLGQLTPREREVLELVVAGLKNGEIAERLTLSKRTAENHVSR 838

Query: 212 ATVKLDAVNRIQAI 225
              KL   +R +A 
Sbjct: 839 LLRKLGVSSREEAA 852


>gi|255534018|ref|YP_003094390.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255347002|gb|ACU06328.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 252

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              + RE   ++L   G  + EIAE L ++V TV  +  +  +K +  N  + I+K++  
Sbjct: 189 PAFSRREMEIIRLIAQGLNNNEIAENLFIAVLTVKKHRKNILMKSNCKNTAELISKSVIQ 248

Query: 232 GYI 234
           G I
Sbjct: 249 GLI 251


>gi|308235090|ref|ZP_07665827.1| transcriptional regulator, LuxR family protein [Gardnerella
           vaginalis ATCC 14018]
 gi|311115225|ref|YP_003986446.1| hypothetical protein HMPREF0421_21341 [Gardnerella vaginalis ATCC
           14019]
 gi|310946719|gb|ADP39423.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 217

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                L+ +E+  ++L   G +++EIA++L + V TVN +L     KL   +R+QA+A
Sbjct: 151 PKTSVLSPQESEIMRLCKQGSSTKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALA 208


>gi|218678823|ref|ZP_03526720.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 153

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 39/151 (25%), Gaps = 8/151 (5%)

Query: 21  LHLIQNRIKARNFALYTINSALDF--PRRQQLIC---ELHNYDLDSGDIPNILIETYGDD 75
           +  +++ I    F  Y +   L     ++            +      I         D 
Sbjct: 1   MTELEHVIHDSGFEYYGLLRHLPQNPAQKNPEPWAAALAGRWPEQWPQIYAAKKYVLIDP 60

Query: 76  FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNGYV 132
            + +      P  W+        +   +   ++     G     G  FP+       G +
Sbjct: 61  MVRYLAHAQRPFGWRESLAAFRKDGQQRRMEQMMVDAFGHGLEDGYIFPIHGRNGILGSL 120

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
               + + L+   I        +     LEL
Sbjct: 121 SLAGKPVELSPMEIALFEAVARKSFWRLLEL 151


>gi|192289348|ref|YP_001989953.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283097|gb|ACE99477.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 225

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|146312147|ref|YP_001177221.1| response regulator [Enterobacter sp. 638]
 gi|145319023|gb|ABP61170.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 218

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 EKTGSPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|161519735|ref|YP_001583162.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189354086|ref|YP_001949713.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|221197639|ref|ZP_03570686.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221204312|ref|ZP_03577330.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|160343785|gb|ABX16870.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189338108|dbj|BAG47177.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|221176478|gb|EEE08907.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221184193|gb|EEE16593.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 214

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211


>gi|115525914|ref|YP_782825.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115519861|gb|ABJ07845.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 210

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G  I T     +       A G   +V                 LT RE   L L   G
Sbjct: 111 RGSEIVTRVEEAIEAFTRRRAQGLAPKV-------PSLNFPGREPLTMREREVLDLFSSG 163

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            T++E   +LG+S  T+  +  +   KL A N    +  
Sbjct: 164 NTNKEAGRQLGISPRTIEYHRANIMKKLGAKNATDLVRI 202


>gi|312796856|ref|YP_004029778.1| transcriptional regulator, LuxR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312168631|emb|CBW75634.1| Transcriptional regulator, LuxR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 294

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
               +++S++   L+ R+   L+L   G T++ IA  LG+S  TV  +LG+   KL A N
Sbjct: 157 RAACRRQSASPGLLSPRQEQILRLVHMGATNKSIARALGISEGTVKIHLGAIFEKLGATN 216

Query: 221 RIQAIAKAIRFGY 233
           R  A+  AI  G+
Sbjct: 217 RAAAV--AIYNGW 227


>gi|298249678|ref|ZP_06973482.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297547682|gb|EFH81549.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1061

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 172  RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              L+E+E   L+L   G ++ EIA +L +SV+TV  ++ S   +L+  NR++A   A   
Sbjct: 999  EPLSEQEQRVLRLLVAGLSNLEIARELVISVNTVKTHVQSLYRRLNVHNRVEASEVARNL 1058

Query: 232  GYI 234
              +
Sbjct: 1059 SLL 1061


>gi|239978812|ref|ZP_04701336.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 213

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +  D     +     A  LT+RE   L L   G T+ EIA +L +   TV +++ +
Sbjct: 131 RALALAHDPRRAAE--PPWAARLTDREREVLHLMATGLTNAEIAARLTVGPATVKSHVAA 188

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              K    +R QA+  A   G 
Sbjct: 189 VLAKTGTRDRTQAVIAAYEAGL 210


>gi|308232152|ref|ZP_07415096.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu001]
 gi|308371029|ref|ZP_07423604.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu003]
 gi|308373427|ref|ZP_07432269.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu005]
 gi|308374593|ref|ZP_07436663.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu006]
 gi|308214848|gb|EFO74247.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu001]
 gi|308330043|gb|EFP18894.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu003]
 gi|308337687|gb|EFP26538.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu005]
 gi|308341368|gb|EFP30219.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu006]
          Length = 1109

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                        K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 1021 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1080

Query: 213  TVKLDAVNRIQAIAKAIRFG 232
              KL   +R+Q   +A R G
Sbjct: 1081 YTKLGLSSRLQLAQQAARRG 1100


>gi|92117445|ref|YP_577174.1| response regulator FixJ [Nitrobacter hamburgensis X14]
 gi|91800339|gb|ABE62714.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 205

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                 +  + +S   +L++RE   +     G +++ IA +  +S  T+  Y  +   K+
Sbjct: 126 HAKSDAISAEIASRIASLSQRERQVMDGLVAGLSNKLIAREHNISPRTIEVYRANVMTKM 185

Query: 217 DAVNRIQAIAKAIRFGYI 234
            A N  + I  A+R G +
Sbjct: 186 QAHNLSELIRLALRAGIL 203


>gi|15842015|ref|NP_337052.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CDC1551]
 gi|289746269|ref|ZP_06505647.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis
            02_1987]
 gi|308372247|ref|ZP_07427963.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu004]
 gi|308405230|ref|ZP_07669460.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu012]
 gi|13882292|gb|AAK46866.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis
            CDC1551]
 gi|289686797|gb|EFD54285.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis
            02_1987]
 gi|308333885|gb|EFP22736.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu004]
 gi|308365275|gb|EFP54126.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu012]
 gi|323718928|gb|EGB28079.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CDC1551A]
          Length = 1113

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                        K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 1025 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1084

Query: 213  TVKLDAVNRIQAIAKAIRFG 232
              KL   +R+Q   +A R G
Sbjct: 1085 YTKLGLSSRLQLAQQAARRG 1104


>gi|226944315|ref|YP_002799388.1| LuxR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226719242|gb|ACO78413.1| Transcriptional regulator, LuxR family [Azotobacter vinelandii DJ]
          Length = 188

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++    E   +   AA NLT RE        +G T +EI  KLG+S  TV  +      
Sbjct: 111 RLMVWHFERIDRPIRAAVNLTPREREISAHIVNGLTCKEIGRKLGISHRTVEVHRARLMK 170

Query: 215 KLDAVNRIQAIAK 227
           KL A N    ++K
Sbjct: 171 KLAAKNSADLVSK 183


>gi|296270057|ref|YP_003652689.1| LuxR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296092844|gb|ADG88796.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM
           43833]
          Length = 288

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               + +    +    +       C +     L     R +    L+ RE   L L   G
Sbjct: 187 AHAELRSIAREITDPALRRRIDEVCAR-----LTRPGGRPARPNPLSPRELDVLALVAVG 241

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             + E A +LG+   TV +YL +A  KL   +R++ +  A R G++
Sbjct: 242 CGNAEAARRLGIGPETVKSYLRNAMRKLGTHSRMETVVAARRAGFL 287


>gi|237713296|ref|ZP_04543777.1| luxR family transcriptional regulator [Bacteroides sp. D1]
 gi|237718016|ref|ZP_04548497.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|262406672|ref|ZP_06083221.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|293369987|ref|ZP_06616554.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|294646076|ref|ZP_06723741.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294810493|ref|ZP_06769146.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|299147711|ref|ZP_07040774.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 3_1_23]
 gi|229446535|gb|EEO52326.1| luxR family transcriptional regulator [Bacteroides sp. D1]
 gi|229452657|gb|EEO58448.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|262355375|gb|EEZ04466.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292634905|gb|EFF53427.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|292638647|gb|EFF57000.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294442257|gb|EFG11071.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298513894|gb|EFI37780.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 3_1_23]
          Length = 200

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L L   G  ++EIA+KL +S+ TV  +  + T KL   +       A+  
Sbjct: 133 EILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMN 192

Query: 232 GYI 234
           GYI
Sbjct: 193 GYI 195


>gi|237731960|ref|ZP_04562441.1| response regulator [Citrobacter sp. 30_2]
 gi|283832686|ref|ZP_06352427.1| response regulator UvrY [Citrobacter youngae ATCC 29220]
 gi|226907499|gb|EEH93417.1| response regulator [Citrobacter sp. 30_2]
 gi|291072362|gb|EFE10471.1| response regulator UvrY [Citrobacter youngae ATCC 29220]
          Length = 218

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 129 IAQQMALSQIEPEKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209


>gi|188591280|ref|YP_001795880.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|170938174|emb|CAP63160.1| putative transcriptional regulator, response receiver CheY domain,
           HTH LuxR domain [Cupriavidus taiwanensis LMG 19424]
          Length = 204

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 4/118 (3%)

Query: 121 PVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTE 176
           PVR L    +G+V        +   V     G      Q +    +L +++ +    L+ 
Sbjct: 86  PVRALRAGAHGFVAKQRGVEDVMQAVRGVLSGYLVFPLQTLETVRQLGEQQQAGLPRLSN 145

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE + LQ    G++++ IA +L +S  TV+ +  +   KL   + ++ +  A R   +
Sbjct: 146 REITILQYLARGHSNKAIAAQLLISSKTVSTHKANIMAKLHVGSLVEMVDYARRHQLV 203


>gi|53718880|ref|YP_107866.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52209294|emb|CAH35239.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
          Length = 302

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++     +  L     G L   +    P  L       V+   
Sbjct: 86  LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 142

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 143 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 202

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 203 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 240


>gi|333025269|ref|ZP_08453333.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745121|gb|EGJ75562.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 233

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G ++  IAE+LGLS  TV AY+     +L   NR++A   A   G 
Sbjct: 168 LTPREREVLVLLAGGLSNAGIAERLGLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 227


>gi|310826620|ref|YP_003958977.1| salavaricin two-component response regulator [Eubacterium limosum
           KIST612]
 gi|308738354|gb|ADO36014.1| salavaricin two-component response regulator [Eubacterium limosum
           KIST612]
          Length = 204

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +F + +     LT  ET  LQL  +GY  + IAE L  S  T++ ++     KLD  + +
Sbjct: 126 VFPRANEYIEELTATETKILQLLSEGYKRKAIAEILFSSERTISNHIQHIFDKLDVSSSL 185

Query: 223 QAIAKAIRFGYI 234
           +A+ K I+ GYI
Sbjct: 186 EAVTKGIKLGYI 197


>gi|308380381|ref|ZP_07669177.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu011]
 gi|308361672|gb|EFP50523.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu011]
          Length = 1199

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                        K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 1111 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1170

Query: 213  TVKLDAVNRIQAIAKAIRFG 232
              KL   +R+Q   +A R G
Sbjct: 1171 YTKLGLSSRLQLAQQAARRG 1190


>gi|256395178|ref|YP_003116742.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361404|gb|ACU74901.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 17/159 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVII 147
           +          ++  +    L     +A  V         VI           ++   + 
Sbjct: 67  LDVHLPGGGGVEVLRQTAPALPDVRFLALSVSDAAEDVIAVIRAGARGYVTKSISGAELA 126

Query: 148 EAHG------------ACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
           +A                  V+  F       R      LT RE   L+    GY  +E+
Sbjct: 127 DAVRRVADGDAFFSPRLAGFVLDAFASGGAAARDEELDRLTPREREVLRFIARGYAYKEV 186

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A +L +S+ TV  ++ S   KL   NR +    A     
Sbjct: 187 ARELVISIKTVETHVSSVLRKLQLSNRRELTRWASDRRL 225


>gi|226228852|ref|YP_002762958.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226092043|dbj|BAH40488.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 239

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 32/86 (37%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                    V+          S+    LT RE   L L   G +++ IA +L +   TV 
Sbjct: 146 AAMLLRRLSVLASLTSATNAMSNVVAPLTSREQDILGLLVTGCSNKVIAGELHIQTTTVK 205

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFG 232
            ++     KL    RI+A A+    G
Sbjct: 206 NHVHRILEKLGVRTRIEAAARVRSMG 231


>gi|218289394|ref|ZP_03493628.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240500|gb|EED07681.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 200

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 147 IEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           + AH             EL          L+ RE   L+LA  G T+ ++A++L LS  T
Sbjct: 111 LAAHLRSIMAGHRVFDPELMVAAMETDSPLSAREIDVLRLAKRGLTTRQMAKELFLSEGT 170

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  YL  A  KL    R +AI KA   G++
Sbjct: 171 VRNYLSGALAKLGCATRQEAIRKADEMGWL 200


>gi|167744316|ref|ZP_02417090.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167924475|ref|ZP_02511566.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
          Length = 87

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  +  LT +E   L+L G   +++EIA  + +   TV  +L +   KLDA +R  A+
Sbjct: 15  PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 74

Query: 226 AKAIRFGYI 234
            +A+  G +
Sbjct: 75  RRALVLGLL 83


>gi|163737546|ref|ZP_02144963.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|163740818|ref|ZP_02148211.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161385809|gb|EDQ10185.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161389072|gb|EDQ13424.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 238

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  +     LT ++   LQL   G  +++IA  L ++  TV A++ +   KL   +R QA
Sbjct: 162 QDATGRLATLTNQQARILQLICAGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQA 221

Query: 225 IAKAIR 230
           +  A  
Sbjct: 222 VLIAKE 227


>gi|148273853|ref|YP_001223414.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831783|emb|CAN02752.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 222

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                 I                +T+RE+  L L   G +++E+A    LS +TV +Y+ 
Sbjct: 126 LFNEAPIRAASAPSLDWPGKREGITDRESEILALITQGKSNQEVAALTYLSPNTVKSYIR 185

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
           S   K+   +R QA+   +  G+
Sbjct: 186 SIYRKIQVQSRTQAVIWGVGHGF 208


>gi|313835112|gb|EFS72826.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314929089|gb|EFS92920.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970815|gb|EFT14913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328905840|gb|EGG25616.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 218

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G T+ EIA+ L ++  TV  ++G    KL+  +R+  +  A   G 
Sbjct: 158 LTDREQEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 234 I 234
           I
Sbjct: 218 I 218


>gi|307294436|ref|ZP_07574280.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306880587|gb|EFN11804.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 219

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               Q +   +      ++    LT+RE     L   G  + EIA + GL+  TV  +L 
Sbjct: 128 FVMEQALVHSISAPANEANVLAALTDRELEIAGLIRAGLRNREIAGRCGLTEGTVKVHLH 187

Query: 211 SATVKLDAVNRIQAIAK 227
           S   KL+  +R + I  
Sbjct: 188 SIFQKLNIKSRSELIIM 204


>gi|260591671|ref|ZP_05857129.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
 gi|260536471|gb|EEX19088.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
          Length = 349

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIA  L +S +TV  +  +   KL   +       AI  
Sbjct: 280 EVLSDREKDVIVSVAQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVN 339

Query: 232 GYI 234
             +
Sbjct: 340 NLV 342


>gi|260466536|ref|ZP_05812725.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029685|gb|EEW30972.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 517

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 87/255 (34%), Gaps = 32/255 (12%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + E  LTG+++  + E    L  +          +Y      D    ++       +   
Sbjct: 265 LIEEFLTGERA--VAEAERVLAALLVTR------IYDTARLGDRMWSERSQHFHETWRTL 316

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV-----IESSGQLSVRLEGGL--- 112
            G      ++ +G+  +  F+     +   +   +         + G     +E      
Sbjct: 317 VGRHGGRCVDIHGEMMISRFDGPGRALRCAAALRDAAQQIGVASAQGAHVGEIETRGPPI 376

Query: 113 LPFAGIAFPVRLGFHK-------------NGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
                +   +     +              G  +   E   ++ + + E       +   
Sbjct: 377 GLTGRVTIQLAAHAGRGDILASRLVADLAVGSGLHFVEAGRVSIDELDEPLALVLAMSEQ 436

Query: 160 FLELFKK---RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
            LE   +   +++   +LT RE+  + L  DG ++  IA +L LS HTV  ++ +  +KL
Sbjct: 437 HLEPACRPKVKAAEPASLTVRESEVVNLIADGKSNAAIAAELRLSEHTVKRHVANILLKL 496

Query: 217 DAVNRIQAIAKAIRF 231
           D  +R  A A ++R 
Sbjct: 497 DLPSRAAAAAFSVRH 511


>gi|227503679|ref|ZP_03933728.1| two-component system response regulator [Corynebacterium accolens
           ATCC 49725]
 gi|227075715|gb|EEI13678.1| two-component system response regulator [Corynebacterium accolens
           ATCC 49725]
          Length = 205

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               E + EA       +   D     +   +    LT RE    +L   G TS E+A K
Sbjct: 109 DTPPEQLAEAIRRVKAGLRVIDPALARESLFTPDNPLTPREREIARLLLSGVTSSELARK 168

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + LS  +V   + S   K DA NR +A  KA   G+I
Sbjct: 169 VHLSPGSVRNVVSSIMTKTDANNRYEAATKAQTQGWI 205


>gi|289424205|ref|ZP_06425988.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289426652|ref|ZP_06428381.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129970|ref|YP_003580633.1| putative Two-component system response regulator [Propionibacterium
           acnes SK137]
 gi|289154902|gb|EFD03584.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289160147|gb|EFD08322.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375832|gb|ADD99686.1| putative Two-component system response regulator [Propionibacterium
           acnes SK137]
 gi|313765489|gb|EFS36853.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772962|gb|EFS38928.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793016|gb|EFS41083.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802535|gb|EFS43757.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806550|gb|EFS45057.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811098|gb|EFS48812.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814401|gb|EFS52115.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815108|gb|EFS52822.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817418|gb|EFS55132.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821840|gb|EFS59554.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824266|gb|EFS61980.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826630|gb|EFS64344.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828631|gb|EFS66345.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831864|gb|EFS69578.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834594|gb|EFS72308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314917145|gb|EFS80976.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921419|gb|EFS85250.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926746|gb|EFS90577.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931258|gb|EFS95089.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954919|gb|EFS99325.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958851|gb|EFT02953.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961142|gb|EFT05243.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964432|gb|EFT08532.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969529|gb|EFT13627.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974595|gb|EFT18690.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977213|gb|EFT21308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980470|gb|EFT24564.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985689|gb|EFT29781.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987215|gb|EFT31306.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314988893|gb|EFT32984.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078555|gb|EFT50586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082523|gb|EFT54499.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086234|gb|EFT58210.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087817|gb|EFT59793.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097430|gb|EFT69406.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099881|gb|EFT71857.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101810|gb|EFT73786.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110233|gb|EFT82209.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331484|gb|EGE73223.1| DNA-binding response regulator [Propionibacterium acnes HL096PA2]
 gi|327333470|gb|EGE75190.1| DNA-binding response regulator [Propionibacterium acnes HL096PA3]
 gi|327445507|gb|EGE92161.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447125|gb|EGE93779.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449840|gb|EGE96494.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454686|gb|EGF01341.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456761|gb|EGF03416.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327456969|gb|EGF03624.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328756522|gb|EGF70138.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758750|gb|EGF72366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761756|gb|EGF75270.1| DNA-binding response regulator [Propionibacterium acnes HL099PA1]
 gi|332674812|gb|AEE71628.1| two-component system response regulator [Propionibacterium acnes
           266]
          Length = 206

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                G   F  +         ++    A  + I   L   +        L+ RE   L+
Sbjct: 97  RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LA  G +   IA +L LSV TV  ++ SA  K  A NR +A   A R G++
Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|261404151|ref|YP_003240392.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261280614|gb|ACX62585.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 201

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   ++LA  G   ++I  +L LS  TV  Y+  A  KL A  RI+AI  A   G
Sbjct: 139 PLSPREREVMKLAAQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKG 198

Query: 233 YI 234
           ++
Sbjct: 199 WL 200


>gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 237

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F       I +       ++     L   +       T RE+S LQL  +G  ++EI
Sbjct: 138 AARFADADMGQIAKQITEIRSLLAQAEAL-PAQEPVQHTFTPRESSVLQLVAEGLMNKEI 196

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+    +K    +R + +  A++   +
Sbjct: 197 ARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRLV 236


>gi|56476411|ref|YP_158000.1| LuxR family transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56312454|emb|CAI07099.1| putative LuxR-family transcriptional regulator [Aromatoleum
           aromaticum EbN1]
          Length = 207

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             R     NL+ RE+   +    G +++EIA KLG++  TV A+LG+   KL   +R+Q 
Sbjct: 134 PGRGPLPANLSARESEVARETAAGLSNKEIASKLGITERTVKAHLGAIFDKLGVRDRLQL 193

Query: 225 IAK 227
           + +
Sbjct: 194 VLR 196


>gi|37524129|ref|NP_927473.1| hypothetical protein plu0103 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783552|emb|CAE12398.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 208

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 140 MLANEVIIE----AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
            +  +++IE    A     +V     +++++  +    L+ERE   +++  +G TS++IA
Sbjct: 108 PIDADLLIETVSSALLFHQKVFRQ-RQIYEQLKTKFSQLSEREREVMKIILEGKTSKQIA 166

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           ++L LS  T+  +  +   KLD  +  Q +
Sbjct: 167 QQLSLSPRTIEVHRANIFHKLDIHSLPQLV 196


>gi|330503759|ref|YP_004380628.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328918045|gb|AEB58876.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina NK-01]
          Length = 89

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L L +   ++  NL+ RE S  +L   G  +++IAE L ++V TV  +L     K    +
Sbjct: 20  LRLEE-WIASHANLSRREISVARLVAQGNCNKKIAEALSITVATVKTHLVHIFEKTGVQS 78

Query: 221 RIQAIAK 227
           R + IA+
Sbjct: 79  RAELIAR 85


>gi|330809485|ref|YP_004353947.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377593|gb|AEA68943.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 223

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 161 LELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
             L +  S        LT ++   L+    G ++++IA  L ++  TV A++ +   KL+
Sbjct: 142 RRLNENPSFPPELLQALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLN 201

Query: 218 AVNRIQAIAKA 228
             NR+QAI  A
Sbjct: 202 VHNRVQAILSA 212


>gi|323959451|gb|EGB55108.1| luxR family protein regulatory protein [Escherichia coli H489]
          Length = 200

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEE 193
              +             +   FL    + +         +L+  +   L +   G +++E
Sbjct: 102 PRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSAHQREILTMLAAGESNKE 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195


>gi|313840174|gb|EFS77888.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
          Length = 206

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                G   F  +         ++    A  + I   L   +        L+ RE   L+
Sbjct: 97  RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LA  G +   IA +L LSV TV  ++ SA  K  A NR +A   A R G++
Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|300785664|ref|YP_003765955.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299795178|gb|ADJ45553.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 345

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 1/160 (0%)

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
            +    +               L  +    +++E        L +           +   
Sbjct: 174 AERDEFVRFQRASLTAEQAARSLAAVYEFDVRDELGAIEVPTLVLHRRDDRAIPFALGQD 233

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V        +V       +     +     A  + +          S     L+ERE   
Sbjct: 234 VAARIPGAAFVPLDGTDHLPWRGDVAGLVRAVREFLGAGRAARGAGSLRHE-LSERELDV 292

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           L+L   G + +EIA +LG+S HT + ++ +   KL   +R
Sbjct: 293 LRLVAHGLSDQEIARRLGISAHTAHRHVSNIRGKLGVSSR 332


>gi|297156465|gb|ADI06177.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 255

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              ++  +    L +RE       G+G ++ EI+  L +SV TV  ++     KLD  NR
Sbjct: 182 ARQERARALLDQLNDREREVAVAVGEGKSNAEISAGLFMSVATVKTHVSRILTKLDLNNR 241

Query: 222 IQAIAKAIRFGYI 234
           +Q    A   G +
Sbjct: 242 VQIALLAHDAGLL 254


>gi|262377214|ref|ZP_06070439.1| two-component system response regulator protein [Acinetobacter
           lwoffii SH145]
 gi|262307952|gb|EEY89090.1| two-component system response regulator protein [Acinetobacter
           lwoffii SH145]
          Length = 216

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                      +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 135 FDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 195 GVQNRTQAV 203


>gi|94263624|ref|ZP_01287434.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93456044|gb|EAT06195.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L    +G ++ EI     +S +TV +++     K    NR+     A+  G
Sbjct: 154 GLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213

Query: 233 Y 233
           Y
Sbjct: 214 Y 214


>gi|51598137|ref|YP_072328.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108810090|ref|YP_654006.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|108813820|ref|YP_649587.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|145600624|ref|YP_001164700.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|150261036|ref|ZP_01917764.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|153950690|ref|YP_001403024.1| UhpA family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162421103|ref|YP_001608412.1| two-component system response regulator [Yersinia pestis Angola]
 gi|165927024|ref|ZP_02222856.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936885|ref|ZP_02225451.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009570|ref|ZP_02230468.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213158|ref|ZP_02239193.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401674|ref|ZP_02307168.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421104|ref|ZP_02312857.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425636|ref|ZP_02317389.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466901|ref|ZP_02331605.1| response regulator [Yersinia pestis FV-1]
 gi|186897358|ref|YP_001874470.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218931003|ref|YP_002348878.1| two-component system response regulator [Yersinia pestis CO92]
 gi|229836409|ref|ZP_04456576.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis Pestoides A]
 gi|229839715|ref|ZP_04459874.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841799|ref|ZP_04461955.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904334|ref|ZP_04519445.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis Nepal516]
 gi|270488274|ref|ZP_06205348.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|51591419|emb|CAH23085.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777468|gb|ABG19987.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108782003|gb|ABG16061.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|115349614|emb|CAL22590.1| two-component system response regulator [Yersinia pestis CO92]
 gi|145212320|gb|ABP41727.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149290444|gb|EDM40521.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|152962185|gb|ABS49646.1| transcriptional regulatory protein UhpA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353918|gb|ABX87866.1| transcriptional regulatory protein UhpA [Yersinia pestis Angola]
 gi|165915127|gb|EDR33738.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921130|gb|EDR38354.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991492|gb|EDR43793.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205456|gb|EDR49936.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961233|gb|EDR57254.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049056|gb|EDR60464.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055326|gb|EDR65120.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186700384|gb|ACC91013.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229678452|gb|EEO74557.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis Nepal516]
 gi|229691138|gb|EEO83191.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696081|gb|EEO86128.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706477|gb|EEO92484.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis Pestoides A]
 gi|262363713|gb|ACY60434.1| two-component system response regulator [Yersinia pestis D106004]
 gi|262367647|gb|ACY64204.1| two-component system response regulator [Yersinia pestis D182038]
 gi|270336778|gb|EFA47555.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|320017338|gb|ADW00910.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 196

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A   LT RE     L  +G    EIAE LGLS  TV+ +  +   KL   N ++   K
Sbjct: 135 AVDPLTRREREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 192


>gi|319941648|ref|ZP_08015972.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804878|gb|EFW01732.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis
           3_1_45B]
          Length = 207

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +IEA  A  +             +    LT+RE   +++   GY+++E+A + G+S  T
Sbjct: 117 DVIEAAVARNKANRRDQAEVADFKARLEQLTQREREVIRMVAQGYSNKEVAAEFGISEKT 176

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           V  + GSA  KL+  N  +     +  G
Sbjct: 177 VQVHRGSAYRKLELHNAAEIARLLLLSG 204


>gi|303246143|ref|ZP_07332424.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492539|gb|EFL52410.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 216

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 28/73 (38%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E      +    L+ RE    +L  DG   + IA  L +S  TV  +  +   KL A   
Sbjct: 142 ETAGDDEARLALLSRREMEVFRLLADGLALKRIAATLCISPKTVETHKYNIMEKLAAETP 201

Query: 222 IQAIAKAIRFGYI 234
                 A+R G I
Sbjct: 202 ADLTKIALRHGLI 214


>gi|326445925|ref|ZP_08220659.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 330

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 16/234 (6%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           S    + ++   +  +   +    +  +     ++    A      Q       +  LD 
Sbjct: 110 SGPVSSVRELRGIDAVQTCVEKACHECR-EEIQVFVPGGA------QPGDVLASSQPLDL 162

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +      +Y             P   +     E   E      + L   +        
Sbjct: 163 LLLERSARVSY---VYQGSIRNDRPTSEYAQWLVEQGAEVRTVPHLPLRVIIWDRRTALV 219

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P+       G  + +S   + A + + E                ++       L ++E++
Sbjct: 220 PIDPAAPDAGAFLLSSPGPVAALQSLFEQVWQRAARFG-----EERDRERDGALADQESA 274

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L   G T E IA KLG+SV T      +   +L A +R Q  A A   G++
Sbjct: 275 VLGLLAAGLTDEVIARKLGVSVRTSRRVTAALMNRLGARSRFQLGALAAERGWL 328


>gi|291326201|ref|ZP_06123556.2| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
 gi|291315361|gb|EFE55814.1| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
          Length = 212

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                + I   L      +    +LT RE+  L     G  + EI+  L +S  TV  ++
Sbjct: 130 QLVFSEKIYQHLISRHNYNDPLSSLTRRESEILHEMAVGLKNREISNLLFISEETVKVHI 189

Query: 210 GSATVKLDAVNRIQA 224
            +   KL   +R++A
Sbjct: 190 RNILKKLRVRSRLEA 204


>gi|297202407|ref|ZP_06919804.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197710072|gb|EDY54106.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 213

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +     +       +    LT RE   L   G+G ++ +IAE+L ++  TV  ++ 
Sbjct: 131 RLIAEFAARPVRGTSVDPAVLDTLTRREREVLSCLGEGLSNADIAERLDMAEATVKTHVS 190

Query: 211 SATVKLDAVNRIQAIAKAIRFG 232
               KL+  +R+QA   A   G
Sbjct: 191 RLLGKLELRSRVQAAVLAQELG 212


>gi|148252434|ref|YP_001237019.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146404607|gb|ABQ33113.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                  +   L  +       LT ++   L +   G  +++IA +LG+S  T+ A++ +
Sbjct: 136 LAAGADPEMTRLRDRLV----TLTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSA 191

Query: 212 ATVKLDAVNRIQAIAKAIR 230
              KL   +R QA+  A +
Sbjct: 192 ILQKLGVESRTQAVIAAAK 210


>gi|133757303|ref|YP_001096222.1| hypothetical protein pLEW279a_p23 [Corynebacterium sp. L2-79-05]
 gi|110084187|gb|ABG49341.1| hypothetical protein [Corynebacterium sp. L2-79-05]
          Length = 221

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L     G T+ EIA+ L L+  TV  ++ +   K +A NR++A   A+R 
Sbjct: 159 ERLTAREREILIRLSQGETNAEIAKALHLAPGTVKVHVSAILRKTEARNRVEAALIALRA 218

Query: 232 G 232
           G
Sbjct: 219 G 219


>gi|4217959|gb|AAD12186.1| putative DNA binding protein TutB1 [Thauera aromatica]
          Length = 227

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 144 EVIIEAHGACYQV---ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           + +++A  A       +T+     ++R+     L++RE   L     G +S+EIA+ LG+
Sbjct: 115 QDLLDAVNAALAFSKEMTNKQREKQERADLLAALSQREMEILDKVVCGNSSKEIAKLLGI 174

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           S  TV A+ G    KL   +    I  A+R
Sbjct: 175 SHKTVEAHRGRIMSKLGLRSTGDLIHFAMR 204


>gi|54025695|ref|YP_119937.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017203|dbj|BAD58573.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 231

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           LT RE   L+L G G+++ EIA +L L+  TV  ++ S      A NR++A   A+
Sbjct: 160 LTPREQEILRLVGRGWSNAEIAAELHLAPGTVKVHVSSILRTTGARNRVEAALVAV 215


>gi|53713956|ref|YP_099948.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60682160|ref|YP_212304.1| putative DNA-binding response regulator [Bacteroides fragilis NCTC
           9343]
 gi|253567050|ref|ZP_04844501.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|265764304|ref|ZP_06092872.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|52216821|dbj|BAD49414.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60493594|emb|CAH08383.1| putative DNA-binding response regulator [Bacteroides fragilis NCTC
           9343]
 gi|251944174|gb|EES84683.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|263256912|gb|EEZ28258.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|301163639|emb|CBW23192.1| putative DNA-binding response regulator [Bacteroides fragilis 638R]
          Length = 202

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            NL++RE   +     G T++EIAEKL LS+HTV  +  + + KL   +       AI  
Sbjct: 132 ENLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVN 191

Query: 232 GYI 234
             +
Sbjct: 192 KLV 194


>gi|331699969|ref|YP_004336208.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954658|gb|AEA28355.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 542

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 131 YVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
            +    +    A E+    +                   RS+    L+ RE   L+L   
Sbjct: 436 ALALLGDEESAAAELTAARNAFAELGAGPAEQEAAELLGRSAVPGGLSPRELEVLRLVAA 495

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ EIA +L ++  TV  +L +  VKLD  +R  A A A     +
Sbjct: 496 GRSNAEIAAELVIAEKTVARHLSNMFVKLDVGSRTAAAAFAFEHRLL 542


>gi|320094339|ref|ZP_08026127.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978727|gb|EFW10282.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 254

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             RS+   +LT+RE   ++    G  + E AE+L +S  TV  ++ S   K    NR Q 
Sbjct: 186 DPRSTVFASLTDREYEVVEAVAAGLDNAETAERLFMSEGTVRNHISSILAKTGLRNRTQV 245

Query: 225 IAKAIRFG 232
             +  R G
Sbjct: 246 AVRYYRAG 253


>gi|289642992|ref|ZP_06475125.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507214|gb|EFD28180.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 216

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               ++     +  +  S    L+ERE   L+L   G+T+ E+AE L LSV TV  Y   
Sbjct: 133 LGAALLGRDTNVEGRSVSTVAGLSEREAEILRLLALGHTNPEMAEVLDLSVRTVETYRYR 192

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              K+   +R + +  A   G +
Sbjct: 193 LQQKVGLRSRAELVRLAREMGLV 215


>gi|254429735|ref|ZP_05043442.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
 gi|196195904|gb|EDX90863.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
          Length = 848

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G    V                 LT +E    +L   G ++ +I+E  G+SV T   +L 
Sbjct: 768 GLFPAVFNATPASDPLEVDPDSVLTPKENEIFELLQSGMSNAQISECTGVSVTTTKWHLK 827

Query: 211 SATVKLDAVNRIQAIAKA 228
           +   KL   NR +A+ +A
Sbjct: 828 NIYSKLGVSNRTEAVLRA 845


>gi|167624392|ref|YP_001674686.1| LuxR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354414|gb|ABZ77027.1| transcriptional regulator, LuxR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 211

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             LT RE   LQ+   G T+  IA KL +S  T+  +L  A  K+   +R QAIA A
Sbjct: 146 ETLTIREREVLQVLRSGSTNIAIANKLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202


>gi|52426340|ref|YP_089477.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308392|gb|AAU38892.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 225

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             + LT+RE    +L   G  ++EI E+LGLS  TV+A+  +A  KLD  N ++  
Sbjct: 163 PIQQLTKRELEICELLIRGLGAKEIGEQLGLSFKTVHAHRANAMSKLDVKNNVELA 218


>gi|85710358|ref|ZP_01041423.1| putative regulator in two-component regulatory system; LuxR family
           protein [Erythrobacter sp. NAP1]
 gi|85689068|gb|EAQ29072.1| putative regulator in two-component regulatory system; LuxR family
           protein [Erythrobacter sp. NAP1]
          Length = 211

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                +   +LT  +   L+    G  +++IA +L +S  TV A++ +   KL   NR Q
Sbjct: 132 EDDDLARMASLTPAQRRILEAMRKGLLNKQIAYELDVSEATVKAHITAIFRKLGVNNRTQ 191

Query: 224 AIAKA 228
           A+  A
Sbjct: 192 AVLVA 196


>gi|332883601|gb|EGK03882.1| hypothetical protein HMPREF9456_01423 [Dysgonomonas mossii DSM
           22836]
          Length = 292

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 37/68 (54%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R +  + L+ERE   L+L   G  ++E+A+KL +S++TV ++  + T KL        I 
Sbjct: 218 RDNKRQPLSERELDVLRLIALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVSGLIF 277

Query: 227 KAIRFGYI 234
             I  GYI
Sbjct: 278 YCITHGYI 285


>gi|239940359|ref|ZP_04692296.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291443791|ref|ZP_06583181.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346738|gb|EFE73642.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 220

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--------RNLT 175
           L     G+++  +    L   V + A G           L  + ++            LT
Sbjct: 99  LHAGAAGFLLKRAAAEELVQAVRLVACGDSLLYPAAVRTLAAEHAARRPARAPAWVARLT 158

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+L   G T+ EIA +L +   T   ++ +   K  A +R QA+  A   G+I
Sbjct: 159 DREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESGFI 217


>gi|238760649|ref|ZP_04621775.1| Response regulator uvrY [Yersinia aldovae ATCC 35236]
 gi|238701138|gb|EEP93729.1| Response regulator uvrY [Yersinia aldovae ATCC 35236]
          Length = 206

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 3/112 (2%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181
           G           + ++ A   +          I   + L +    A      L+ERE   
Sbjct: 85  GAGGYLSKGAAPQDVVAAIRAVHSGQRYIASDIAQQMALGQLEPPAETPFSCLSERELQI 144

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   G    EI+E+L LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 145 MLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 196


>gi|237713606|ref|ZP_04544087.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262406295|ref|ZP_06082844.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643037|ref|ZP_06720877.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294810061|ref|ZP_06768732.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298482810|ref|ZP_07000993.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
 gi|229446328|gb|EEO52119.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262354998|gb|EEZ04089.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641594|gb|EFF59772.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294442665|gb|EFG11461.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298271010|gb|EFI12588.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
          Length = 203

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIAEKL LS+HTV  +  + + KL   +       AI  
Sbjct: 133 DTLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVN 192

Query: 232 GYI 234
             +
Sbjct: 193 KLV 195


>gi|13471875|ref|NP_103442.1| hypothetical protein mll1989 [Mesorhizobium loti MAFF303099]
 gi|14022619|dbj|BAB49228.1| mll1989 [Mesorhizobium loti MAFF303099]
          Length = 525

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 152 ACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           A   V++   +  ++    A   +T RE   L+L   G T++E+A KL +S  T + ++ 
Sbjct: 435 AAEAVLSFAGQPSRRAGPQALAGMTPREIEVLRLIATGLTAKEVARKLDISPKTADHHIE 494

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           S   K+    R  A   A+  G +
Sbjct: 495 SVYSKIGVTTRAAAALYAVEHGLV 518


>gi|320162423|ref|YP_004175648.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996277|dbj|BAJ65048.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 220

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                + +     ++ +    +L+ERE S L     G T+ EI   L LS  TV  ++  
Sbjct: 134 RLLHFVREMERKAEQNAFR--DLSERELSVLAELAKGKTNAEIGRTLHLSEKTVRNHVSV 191

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL   NR++    A+    
Sbjct: 192 ILEKLHLSNRVELATYAVEHHI 213


>gi|315445195|ref|YP_004078074.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1]
 gi|315263498|gb|ADU00240.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1]
          Length = 519

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +       E  ++   A   V++      ++ S+    LT RE   L L   G +++EI
Sbjct: 418 ATRLRDRVREGHLD-ELAVDAVLSAAGHAARRVSARPGGLTPREIEVLCLVARGASNKEI 476

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  T   ++     K+ A NRI A   A+  G I
Sbjct: 477 AATLGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516


>gi|315125633|ref|YP_004067636.1| response regulator receiver domain protein (CheY-like)
           [Pseudoalteromonas sp. SM9913]
 gi|315014146|gb|ADT67484.1| response regulator receiver domain protein (CheY-like)
           [Pseudoalteromonas sp. SM9913]
          Length = 204

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          LT++E   L+LA DG  + EIA++L +S  T   YL  A  KL+A NR
Sbjct: 132 ELAINALDDTDPLTDKERKALKLASDGLKTSEIAKQLYISEGTTRNYLSDAIAKLNATNR 191

Query: 222 IQAIAKAIRFGYI 234
           I A   A + G++
Sbjct: 192 IDAARIARQKGWL 204


>gi|296101738|ref|YP_003611884.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056197|gb|ADF60935.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 218

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                 A     Q+    +E  K  S  A +L+ERE   + +   G    EI+E+L LS 
Sbjct: 120 AGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLSP 178

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            TVN+Y      KL+    ++    AIR G 
Sbjct: 179 KTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|302561891|ref|ZP_07314233.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302479509|gb|EFL42602.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L+L   G T+ EIA KL +   TV +++ +   KL A +R QA+  A   G++
Sbjct: 158 TGREGEVLRLMARGLTNAEIAAKLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217


>gi|183598703|ref|ZP_02960196.1| hypothetical protein PROSTU_02115 [Providencia stuartii ATCC 25827]
 gi|188020894|gb|EDU58934.1| hypothetical protein PROSTU_02115 [Providencia stuartii ATCC 25827]
          Length = 228

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   + L   G  +++IA+ L LS  TVN Y      KL+  + ++    AI +
Sbjct: 148 ELLSTRELEIMLLITQGIPTKQIAQVLNLSPKTVNTYRYRMFGKLNIRSDVELTHIAISY 207

Query: 232 GYI 234
           G I
Sbjct: 208 GLI 210


>gi|163751244|ref|ZP_02158472.1| DNA-binding response regulator, LuxR family protein [Shewanella
           benthica KT99]
 gi|161328958|gb|EDQ00032.1| DNA-binding response regulator, LuxR family protein [Shewanella
           benthica KT99]
          Length = 219

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H    ++  D   L  ++ +   +LT ++   LQ+  +G  +++IA  LG+S  T+ A+ 
Sbjct: 134 HAEIQEIKEDASALVARKLA---DLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHA 190

Query: 210 GSATVKLDAVNRIQAIA 226
            +   KL   NR QA+ 
Sbjct: 191 TAIFRKLGVRNRTQAVI 207


>gi|330896102|gb|EGH28323.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 116

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 43  AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 102

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 103 AALLLQQL 110


>gi|307700729|ref|ZP_07637754.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
 gi|307613724|gb|EFN92968.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
          Length = 189

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K ++  + LT  E    Q    G ++ +IA+ L     T+  ++ S   K    +R +
Sbjct: 117 DPKYTAGKQALTPAERDVWQEVLKGKSNAQIAKTLHSQESTIKTHMTSIMQKFQVRSRAE 176

Query: 224 AIAKAIRFGYI 234
            +  + + G I
Sbjct: 177 LLVFSAKNGAI 187


>gi|283834157|ref|ZP_06353898.1| DNA-binding response regulator, LuxR family [Citrobacter youngae
           ATCC 29220]
 gi|291070307|gb|EFE08416.1| DNA-binding response regulator, LuxR family [Citrobacter youngae
           ATCC 29220]
          Length = 210

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL     ++ I  A    
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIYSKLGLHTIVELIDYAKMHE 208

Query: 233 Y 233
            
Sbjct: 209 L 209


>gi|182677961|ref|YP_001832107.1| two component LuxR family transcriptional regulator [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633844|gb|ACB94618.1| two component transcriptional regulator, LuxR family [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 309

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 37/79 (46%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+ D     ++      NLT RE   L     G ++ +I E LGLS  TV+ +L  
Sbjct: 226 LLLRVMEDNTLSPEQTLKTRLNLTSREAEVLTWVARGKSNRDIGEILGLSPRTVDKHLEQ 285

Query: 212 ATVKLDAVNRIQAIAKAIR 230
              K+   NR+ A A AI+
Sbjct: 286 VYAKIGVENRVAATALAIQ 304


>gi|134096765|ref|YP_001102426.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005191|ref|ZP_06563164.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909388|emb|CAL99500.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 211

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 37/78 (47%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +V+    +           LTERE   L+L G+G T+ +IAE+L L+  TV  Y+ +  
Sbjct: 130 ARVLDRLRQSTSPVPDELDALTERERKVLELIGEGLTNRQIAERLFLAEKTVKNYVTAVL 189

Query: 214 VKLDAVNRIQAIAKAIRF 231
            KL    R QA A   R 
Sbjct: 190 AKLGMERRTQAAAWVARR 207


>gi|126732485|ref|ZP_01748284.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126707124|gb|EBA06191.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 235

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +   +LT ++   L L  +G  +++IA  L ++  TV A++ +   KL   +R QA
Sbjct: 151 DDALARLASLTNQQARILHLICEGKLNKQIAFDLSIAETTVKAHVTAIMRKLGVHSRTQA 210

Query: 225 IAKAIRF 231
           +  A   
Sbjct: 211 VLVAQEA 217


>gi|119387463|ref|YP_918497.1| two component LuxR family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119378038|gb|ABL72801.1| two component transcriptional regulator, LuxR family [Paracoccus
           denitrificans PD1222]
          Length = 160

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNL----TERETSCLQLAGDGYTSEEIAEKLGL 200
            +   H      +     L      A   L    + RE   L L G G  +  IA +L +
Sbjct: 60  DLDLLHLKIENTLAFAHRLRDGMVPAGEPLDVHLSRREEQVLSLLGQGERTGAIASRLEI 119

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           S HTV+ Y+     KL   NR  A   AI  G 
Sbjct: 120 SEHTVSHYIKELYRKLGINNRADAARMAISLGL 152


>gi|157962859|ref|YP_001502893.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157847859|gb|ABV88358.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 203

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 6/111 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTER 177
            G       +   +                 Q I   L       L     +    L+ER
Sbjct: 85  TGHGDVPMAVDAFKNGAFDFFQKPVQGSILAQAIAKGLTNSLEQHLKLTDQALIDTLSER 144

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           E    QL   G T++++A +L +++ T+  +      KL   N  + +  A
Sbjct: 145 EAQIFQLVIAGNTNKQMANELCVAIRTIEVHRSKLMTKLGVSNLAELVKLA 195


>gi|27525450|emb|CAD56976.1| putative regulatory protein [Citrobacter freundii]
          Length = 210

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL     ++ I  A    
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIYSKLGLHTIVELIDYAKMHE 208

Query: 233 Y 233
            
Sbjct: 209 L 209


>gi|327480133|gb|AEA83443.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 216

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 143 AKAASAGLASLTPQQFRVLTMVCDGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQ 202

Query: 224 AIAKAIRFG 232
           A     + G
Sbjct: 203 AALLLQQMG 211


>gi|319942475|ref|ZP_08016786.1| hypothetical protein HMPREF9464_02005 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803948|gb|EFW00864.1| hypothetical protein HMPREF9464_02005 [Sutterella wadsworthensis
           3_1_45B]
          Length = 243

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 155 QVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
             + D L    ++  A        LT RE   L     G  + EIA+ L ++  TV  ++
Sbjct: 135 AALADHLRTRVQKKPAKDPSITQLLTNREYEVLCCVASGLANREIAQVLKITDGTVKVHV 194

Query: 210 GSATVKLDAVNRIQAIAKAIRF 231
                KL   +R++A   A   
Sbjct: 195 KHLLKKLKFRSRVEAAVWASEH 216


>gi|313897472|ref|ZP_07831015.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312957842|gb|EFR39467.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 210

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + D L+   K +  + +L ERE   +QL   G  ++E+A+ L LS  TV  YL S   KL
Sbjct: 130 LPDLLKQHTKETLCSYDLNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSSLLEKL 189

Query: 217 DAVNRIQAIAKAIRF 231
              +R Q      + 
Sbjct: 190 QLRDRTQLAIFYYQN 204


>gi|238784689|ref|ZP_04628693.1| Response regulator uvrY [Yersinia bercovieri ATCC 43970]
 gi|238714368|gb|EEQ06376.1| Response regulator uvrY [Yersinia bercovieri ATCC 43970]
          Length = 206

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 3/112 (2%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181
           G           + ++ A   +          I   + L +    A      L+ERE   
Sbjct: 85  GAGGYLSKGAAPQDVVTAIRAVHSGQRYIASDIAQQMALSQLEPPAETPFSCLSERELQI 144

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   G    EI+E+L LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 145 MLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 196


>gi|124009769|ref|ZP_01694439.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
 gi|123984274|gb|EAY24623.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
          Length = 218

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L     T+ E+AEKL +S  TV  +  +   K  A N    +  A++  
Sbjct: 155 ELTKREQEVLELICKELTTPEMAEKLFISNRTVEGHRKNLLEKTGAKNTAGLVVFALKNE 214

Query: 233 YI 234
            +
Sbjct: 215 LV 216


>gi|58584166|ref|YP_203182.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428760|gb|AAW77797.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 301

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 225 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 283


>gi|76811819|ref|YP_332880.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|76581272|gb|ABA50747.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
          Length = 363

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++     +  L     G L   +    P  L       V+   
Sbjct: 147 LHALCQACAPTPVAALVDDASPVHAQALF--EAGVLGVISRTTRP-HLIVRALEMVLLGG 203

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 204 HYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 263

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 264 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 301


>gi|54298635|ref|YP_125004.1| transmission activator LetA [Legionella pneumophila str. Paris]
 gi|148358619|ref|YP_001249826.1| transmission activator LetA [Legionella pneumophila str. Corby]
 gi|296108291|ref|YP_003619992.1| Legionella transmission activator LetA [Legionella pneumophila
           2300/99 Alcoy]
 gi|53752420|emb|CAH13852.1| Legionella transmission activator LetA [Legionella pneumophila str.
           Paris]
 gi|148280392|gb|ABQ54480.1| Legionella transmission activator LetA [Legionella pneumophila str.
           Corby]
 gi|295650193|gb|ADG26040.1| Legionella transmission activator LetA [Legionella pneumophila
           2300/99 Alcoy]
          Length = 219

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L + + S    L+ERE   + +   G   ++IA++L LS  T+N Y      KL 
Sbjct: 133 MAINSLQEPQDSPFDLLSEREMQVMLMITSGMNVQDIADRLFLSSKTINGYRYRMFEKLG 192

Query: 218 AVNRIQAIAKAIRFGYI 234
             N ++    A++   I
Sbjct: 193 IKNDVELTYLAMKHRII 209


>gi|39933929|ref|NP_946205.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39647776|emb|CAE26296.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 225

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|94314633|ref|YP_587842.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93358485|gb|ABF12573.1| two component transcriptional regulator, LuxR family (receiver
           domain) (bvgA-like) [Cupriavidus metallidurans CH34]
          Length = 210

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + LT++E   +Q+   G +++ I + L +S  TV+++      KL     ++ I  A R 
Sbjct: 147 QQLTDKEIQIMQMLSKGMSNKAIGDSLFISNKTVSSHKTRIMEKLHVTTLLELIDFARRC 206

Query: 232 GY 233
             
Sbjct: 207 NI 208


>gi|315644623|ref|ZP_07897755.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315280130|gb|EFU43427.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 201

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   ++LA  G   ++I  +L LS  TV  Y+  A  KL A  RI+AI  A   G
Sbjct: 139 PLSPREREVMKLAAQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKG 198

Query: 233 YI 234
           ++
Sbjct: 199 WL 200


>gi|300788437|ref|YP_003768728.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797951|gb|ADJ48326.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 8/168 (4%)

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
           GD+ +        P     +  +   +   + +  L   L     I              
Sbjct: 36  GDEVVAAARE-TKP-DVALLDVQMPGKDGLEAAADLRAALPSCRVIICTTFGRPGYLARA 93

Query: 133 IFTSEFL----MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAG 186
           +              E ++EA    +  +   D     +  ++ A  LT RE   L+ A 
Sbjct: 94  MAAGAAGFVVKDAPPEQLVEAVRRVHSGLRVVDPALAAESLATGASPLTGRERDVLREAK 153

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           DG T  ++A  L LS  TV  +L +A  K  A  R +A+  A   G++
Sbjct: 154 DGSTVADVARALHLSEGTVRNHLSAAIGKTGARTRAEAVRVAEERGWL 201


>gi|283787636|ref|YP_003367501.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282951090|emb|CBG90768.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 197

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169
           A I   V             G   F S+      E+I   H         +L        
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAIKL 130

Query: 170 AA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           AA     LT RE    +    G   +EIA  LGLS  TV+ +  +   KL   N ++   
Sbjct: 131 AAGRQDPLTRRERQVAEKLAQGMAVKEIAAVLGLSPKTVHVHRANLMEKLGVSNDVELAR 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|229002577|ref|ZP_04160624.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|229003799|ref|ZP_04161608.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228757400|gb|EEM06636.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228758504|gb|EEM07644.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 201

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L+   +  +    L+ RE   LQ    G++  EIA++L +S+ TV+ +      KL
Sbjct: 121 MLKRLQNETESRNPYVILSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRMLNKL 180

Query: 217 DAVNRIQAIAKAIRFGYI 234
           +   + + +  AI++  I
Sbjct: 181 NLSKKSELVQYAIKYNLI 198


>gi|226226246|ref|YP_002760352.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089437|dbj|BAH37882.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 206

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLT 175
             P  +   ++G V F           +++A               EL          LT
Sbjct: 90  TVPASVQAMRSGAVDF--LEKPADPSALLDAVKRAVARCDAHATKQELLSAVLQRIERLT 147

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            RE    +    G  ++ IA +LG+++ TV  + G    K+DA +    + 
Sbjct: 148 AREREVFEGVARGLPNKSIATELGIALKTVKVHRGRVMTKMDAESVADLVR 198


>gi|110590832|pdb|2AVX|A Chain A, Solution Structure Of E Coli Sdia1-171
          Length = 171

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 12/165 (7%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
            L  ++  + +E+   + L   +++   +  Y++      P  +  +    NY       
Sbjct: 14  LLRFQRMETAEEVYHEIELQAQQLE---YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSY 70

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D  L   N     ++W             Q             G+   + L
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFS-----EAQPLWEAARAHGLRRGVTQYLML 125

Query: 125 GFHKNGYVIF----TSEFLMLANEVIIEAHGACYQVITDFLELFK 165
                G++ F      E  +L++E+ ++      + +   + L  
Sbjct: 126 PERALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLND 170


>gi|23428533|gb|AAL11447.1| putative global response regulation activator GrrA [Serratia
           plymuthica]
          Length = 218

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQTETPFSCLSERELQIMLMITKGKKVNEISEQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|254249561|ref|ZP_04942881.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124876062|gb|EAY66052.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 214

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|293396653|ref|ZP_06640929.1| response regulator [Serratia odorifera DSM 4582]
 gi|291420917|gb|EFE94170.1| response regulator [Serratia odorifera DSM 4582]
          Length = 235

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 150 MALSQLEPQTETPFNCLSERELQIMLMITKGKKVNEISEQLNLSPKTVNSYRYRMFSKLN 209

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 210 ISGDVELTHLAIRHGL 225


>gi|260774411|ref|ZP_05883325.1| transcriptional regulatory protein UhpA [Vibrio metschnikovii CIP
           69.14]
 gi|260610538|gb|EEX35743.1| transcriptional regulatory protein UhpA [Vibrio metschnikovii CIP
           69.14]
          Length = 117

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 31/69 (44%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I   L   K   S   +LT RE    QL  DG   + IA++LGLS  TV+ +  +   KL
Sbjct: 41  IASRLVTPKHPISPLASLTPREREVCQLLADGIDVKTIAQQLGLSPKTVHVHRANGMEKL 100

Query: 217 DAVNRIQAI 225
              N +   
Sbjct: 101 GVSNTVALA 109


>gi|269957500|ref|YP_003327289.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306181|gb|ACZ31731.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 223

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G +++EIA  L + + TV ++L     KL   +R+QA+  A +  +
Sbjct: 157 LTSREQEILLLLAQGMSNDEIARTLVVELSTVKSHLARMLPKLGVRSRLQAVVWAYQNRF 216

Query: 234 I 234
           +
Sbjct: 217 V 217


>gi|302036834|ref|YP_003797156.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|190343248|gb|ACE75636.1| response regulator [Candidatus Nitrospira defluvii]
 gi|300604898|emb|CBK41231.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLEL---FKKRSSAARNLTERETS 180
               GY+   S    L   +     G       + + L L             L++RE  
Sbjct: 96  AGAAGYLSKDSAPNELVQALRKILGGGKFVSAAVAELLALNLESDGEKPLHEQLSDREYQ 155

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + L   G + ++IA+ L + V T+N Y      K+   N  +    AI    +
Sbjct: 156 VMCLIAVGKSLKDIADDLCVGVSTINTYRARILEKMQLKNNTELTHYAIENRLV 209


>gi|134026355|dbj|BAF49408.1| response regulator [Streptomyces halstedii]
          Length = 217

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                      S    LT RE   L   G+G ++ EIA +L ++  TV  ++     KL+
Sbjct: 141 APVRPARTPDPSVLDALTRREREVLGCLGEGLSNAEIAVRLSMAEATVKTHVSRLLGKLE 200

Query: 218 AVNRIQAIAKAIRFGYI 234
             +R+QA   A   G +
Sbjct: 201 LRSRVQAAVLAQELGVL 217


>gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 301

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 28/56 (50%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           T RE+  L     G T+ EIA+ L LS  TVN +L     KL   NR  A A  I+
Sbjct: 240 THRESQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVENRTAAAAMVIQ 295


>gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 349

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 61/222 (27%), Gaps = 28/222 (12%)

Query: 14  LQELSPRLHLIQNRIKARN----FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           LQ         +   +ARN    F   +I   +  P   +LI +                
Sbjct: 142 LQGARRARQEARQAGQARNALDAFGYASITVRMGGPGDGRLIWQTPLARDLLMRYYGTSA 201

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               +  L                 E  +E       RL   L P   + F +       
Sbjct: 202 PQTPEPVLNWLRRHQ-----AEAGREHELEPP-----RLAMELGPRR-LTFRLHRHTGDA 250

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G     +       + +I         + + + L  K       LT RE   L     G 
Sbjct: 251 GGDGEGAS------DWLIVMREISDDAVIEAMSLSFK-------LTAREAEVLYWVIKGK 297

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            + +IA  LG S  TV  +L     KL    R  A   A+  
Sbjct: 298 INRDIAGILGASPATVKKHLEHVYAKLGVETRTAAAGMALNR 339


>gi|118580732|ref|YP_901982.1| LuxR family transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118503442|gb|ABK99924.1| transcriptional regulator, LuxR family [Pelobacter propionicus DSM
           2379]
          Length = 201

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           NL+ +E   +     G T+ EIA +L +S  TV  ++ +   K +   R Q +   I+ 
Sbjct: 137 NLSNKEREVVISVSQGLTNREIAARLYISEQTVKTHINNIFKKTNMARRTQLVPLGIKL 195


>gi|270261293|ref|ZP_06189566.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044777|gb|EFA17868.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 218

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQTETPFSCLSERELQIMLMITKGKKVNEISEQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|271967702|ref|YP_003341898.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510877|gb|ACZ89155.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++    LT RE   L+ A +G    EIA++L LS  TV  YL     K+ A  R++A+  
Sbjct: 135 NARQNPLTTRELEVLKAAAEGAPVREIADRLFLSGGTVRNYLSRILAKIGARTRVEAVTI 194

Query: 228 AIRFGYI 234
           A   G++
Sbjct: 195 AREAGWL 201


>gi|313792636|gb|EFS40722.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803170|gb|EFS44366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313829121|gb|EFS66835.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313839557|gb|EFS77271.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314963942|gb|EFT08042.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|315079093|gb|EFT51100.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315081562|gb|EFT53538.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315109751|gb|EFT81727.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327334500|gb|EGE76211.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1]
 gi|327457479|gb|EGF04134.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 202

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L +RET  L+L  DG ++ +IA +L LS  TV  YL +A  KLDA +R  A+ +A   G
Sbjct: 141 PLNDRETEILRLVADGSSTAQIASRLYLSKGTVRNYLSTAMSKLDADSRTAAVTRAREEG 200

Query: 233 YI 234
           ++
Sbjct: 201 WL 202


>gi|258653570|ref|YP_003202726.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556795|gb|ACV79737.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 221

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 38/82 (46%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V   F      R++A   LT+RE   L L   G T+ +IA +L LS  TV   + +
Sbjct: 136 LAARVTRAFAAPDNPRAAAFPQLTDREREVLDLIAAGRTNAQIAAELFLSGKTVRNNVST 195

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL A +R   I +A   G+
Sbjct: 196 ILSKLQAGDRANVIIRARDAGF 217


>gi|114047165|ref|YP_737715.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113888607|gb|ABI42658.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 220

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K +S   +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA
Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 225 IA 226
           + 
Sbjct: 206 VI 207


>gi|332142919|ref|YP_004428657.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143036|ref|YP_004428774.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552941|gb|AEA99659.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553058|gb|AEA99776.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 103

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +        L++RE        +G +++ IA +L +S  TV  +  +   KL+  +R  
Sbjct: 28  ARDSVVPINCLSKRELQVAHKIMEGRSNKVIASELFISERTVKFHCANIYKKLNISSRSA 87

Query: 224 AIA 226
            IA
Sbjct: 88  LIA 90


>gi|255325217|ref|ZP_05366323.1| two-component system response regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311739691|ref|ZP_07713526.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297782|gb|EET77093.1| two-component system response regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311305507|gb|EFQ81575.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 247

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT RE   L+L   GY++ EI+E   +S+ TV  ++     K  + +R+ A+  A+  
Sbjct: 176 EDLTPRELDVLKLMALGYSNTEISECEFVSMATVKTHVRHILTKTGSRDRVHAVLYALTH 235

Query: 232 GYI 234
           G +
Sbjct: 236 GVV 238


>gi|121598084|ref|YP_989961.1| LuxR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|121225882|gb|ABM49413.1| transcriptional regulator, LuxR family [Burkholderia mallei SAVP1]
          Length = 259

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 31  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 82

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 83  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 139

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 +       +          +   L   +  +R + 
Sbjct: 140 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 199

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 200 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 254


>gi|330444975|ref|ZP_08308629.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493093|dbj|GAA03126.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 211

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 124 LGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
                 G++  +S+   L + +  +++        I++  + ++  +     LT ++   
Sbjct: 98  HSHGAFGFIPKSSDMRALISALNQVLDGEPFFPDNISENNQAYRDLADKIATLTPQQYKV 157

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +  DG  +++IA  L +S  T+ A++ +   KLD  NR QA+    +   
Sbjct: 158 LGMLSDGQLNKQIAYDLNVSEATIKAHMTAIFRKLDVKNRTQAVILLQQLDL 209


>gi|288961577|ref|YP_003451887.1| two-component response regulator [Azospirillum sp. B510]
 gi|288913857|dbj|BAI75343.1| two-component response regulator [Azospirillum sp. B510]
          Length = 217

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           LT+R+   L    +G ++++IA +LGLS  TV  ++ +    L   NR QA 
Sbjct: 157 LTQRQREVLDRLREGKSNKQIAHELGLSEGTVKIHMTAIFKSLGVRNRTQAA 208


>gi|167629282|ref|YP_001679781.1| two-component transcriptional response regulator, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167592022|gb|ABZ83770.1| two-component transcriptional response regulator, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 464

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           LTERE     +  +G TS EIAEK  +S++TV +++ +   K+    +++ 
Sbjct: 403 LTEREYEIALMIAEGLTSREIAEKTFISLNTVKSHIKNIYRKIGVSTKVEL 453


>gi|167562212|ref|ZP_02355128.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167569457|ref|ZP_02362331.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 279

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++   E +  L     G L        P  L       V+   
Sbjct: 63  LHALCRACAPTPVAALTDDASPEHAQALFD--AGVLGVIPRSTRP-HLIVRALEMVLLGG 119

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ SA   L+ R+   ++    G T++ I
Sbjct: 120 HYIPPSALNLTEPAARARDGRVDAIVSQLPRRKRSACSLLSPRQAQIMRFVHMGSTNKMI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|86159866|ref|YP_466651.1| LuxR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776377|gb|ABC83214.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 175

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               ++ A  LT+RE     L  DG  S E+AE+LG++  TV ++L +   KL   NR++
Sbjct: 108 EAATATPADGLTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVE 167

Query: 224 AIAKAIRF 231
              + ++ 
Sbjct: 168 LARRLVQH 175


>gi|117920179|ref|YP_869371.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|117612511|gb|ABK47965.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 220

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA+ 
Sbjct: 155 LTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|103486489|ref|YP_616050.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976566|gb|ABF52717.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 195

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ R+   L L  +G  +++IA +LGLS  T+  +  +    L       AI  A+  GY
Sbjct: 136 LSPRQREVLLLMAEGLLNKQIAWRLGLSERTIKMHRSALLRSLGVETTADAIRLAVEAGY 195


>gi|310827838|ref|YP_003960195.1| hypothetical protein ELI_2249 [Eubacterium limosum KIST612]
 gi|308739572|gb|ADO37232.1| hypothetical protein ELI_2249 [Eubacterium limosum KIST612]
          Length = 206

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A +++ER+   ++    G ++ EI+E L LS  TV  Y+ +   KL+  +R Q    
Sbjct: 145 AYSISERDLEIIEGVAQGLSNREISETLFLSEGTVRNYISNILDKLELRDRTQLAIF 201


>gi|303238517|ref|ZP_07325051.1| transcriptional regulator, LuxR family [Acetivibrio cellulolyticus
           CD2]
 gi|302593915|gb|EFL63629.1| transcriptional regulator, LuxR family [Acetivibrio cellulolyticus
           CD2]
          Length = 274

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL---FKKRSSAARNL 174
              PV        Y+   S    ++N ++         + ++  ++     +  + +  L
Sbjct: 145 YCIPVIHKSKIYCYISVISLSNPISNALVGLLELLAINIYSESSQISYSDCEELNLSHKL 204

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           TE++ + + +   G++ E+IA++L LS+ T+  +      KL+A +R+ A+ KA+  
Sbjct: 205 TEKQIAIISMIAQGFSDEQIAQELSLSLATIKYHNQLIFKKLNANSRVDAVVKALML 261


>gi|306836048|ref|ZP_07469038.1| DNA-binding response regulator [Corynebacterium accolens ATCC
           49726]
 gi|304568075|gb|EFM43650.1| DNA-binding response regulator [Corynebacterium accolens ATCC
           49726]
          Length = 205

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               E + EA       +   D     +   +    LT RE    +L   G TS E+A K
Sbjct: 109 DTPPEQLAEAIRRVKAGLRVIDPALARESLFTPDNPLTPREREIARLLLSGVTSSELARK 168

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + LS  +V   + S   K DA NR +A  KA   G+I
Sbjct: 169 VHLSPGSVRNVVSSIMTKTDANNRYEAATKAQTQGWI 205


>gi|301383778|ref|ZP_07232196.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tomato Max13]
          Length = 104

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 42  DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 101

Query: 232 GYI 234
           G +
Sbjct: 102 GLV 104


>gi|260868506|ref|YP_003234908.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O111:H- str. 11128]
 gi|257764862|dbj|BAI36357.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O111:H- str. 11128]
          Length = 218

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|222081806|ref|YP_002541171.1| two-component nodulation response regulator protein [Agrobacterium
           radiobacter K84]
 gi|221726485|gb|ACM29574.1| two-component nodulation response regulator protein [Agrobacterium
           radiobacter K84]
          Length = 204

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTE 176
            P+ +   K G V F         + +++A     +     L      +        LT 
Sbjct: 91  VPMSVRAMKAGAVEF--LLKPFREQDLLDAIRQALEKDRTRLRQDAATTDLRERFATLTA 148

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           RE   + L   G  +++IA +LGLS  TV  + G A  K+ A +    I  A   G
Sbjct: 149 REREVMALVARGRLNKQIAAELGLSEITVKVHRGQAMRKMQAGSVADLIRMADALG 204


>gi|117618012|ref|YP_855113.1| LuxR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559419|gb|ABK36367.1| transcriptional regulator, LuxR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 303

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 58/208 (27%), Gaps = 27/208 (12%)

Query: 47  RQQLICELHNYDLDSGDIPNILIETY-GDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQL 104
           ++ +    + +   +      L   +  D F+     GL   +W   Q     ++   + 
Sbjct: 82  QRPVYLYDNLHHQRALLFDRYLTRHFSQDPFMQALEQGLPAGVWTLAQVSRGRLDPEYRH 141

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI------- 157
                 G     G+  PVR G     ++    +   L+ + +         V        
Sbjct: 142 HFYQATGWQEEVGLILPVRGGLTLMLFLGRLDKRSSLSRDELARLEALFPLVHSLCRQHW 201

Query: 158 ---TDFLELFKKRSSAAR---------------NLTERETSCLQLAGDGYTSEEIAEKLG 199
                 L         A                +LT RE     L   G  +E IA  LG
Sbjct: 202 REEAALLAQSPMLPGGADLKATVEQAIASVGGASLTRRERQVAGLLLQGLDTEAIAGTLG 261

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +   TV  +      KL   +R +    
Sbjct: 262 IGSGTVKNHRKHLYAKLHLRSRAELFRF 289


>gi|94269857|ref|ZP_01291582.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93451041|gb|EAT02000.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L    +G ++ EI     +S +TV +++     K    NR+     A+  G
Sbjct: 154 GLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213

Query: 233 Y 233
           Y
Sbjct: 214 Y 214


>gi|330470665|ref|YP_004408408.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813636|gb|AEB47808.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 338

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L    +     LT RE   L     G ++ E+A  LG+   TV  ++     KL   +R+
Sbjct: 267 LTGPWAERIATLTAREREVLLAVARGRSNAEVAADLGIGDETVKTHVSEVLRKLGCRDRV 326

Query: 223 QAIAKAIRFGY 233
           QA+      G 
Sbjct: 327 QAVIAVYESGL 337


>gi|319900177|ref|YP_004159905.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
 gi|319415208|gb|ADV42319.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
          Length = 248

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++R+   + L   GY S++IA+KL +SVHTV+ +       L+  N   A+  A+R   
Sbjct: 188 LSQRQLEIVSLLAKGYGSKQIADKLCISVHTVSRHRQDILSLLNVTNTAAAVEIALRMNL 247

Query: 234 I 234
           I
Sbjct: 248 I 248


>gi|312116148|ref|YP_004013744.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221277|gb|ADP72645.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 224

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 3/120 (2%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
            +    +P      K       S  L   ++ II A G              + ++    
Sbjct: 101 LYTIYCYPSHDDAEKRLA---GSLRLRRISDEIIRAGGTAMGPEPARKAGAAQTAALVDQ 157

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   + L   G  ++ +A  LGLS  T+ A+   A  +L+       I  AI  G 
Sbjct: 158 LSTREREVVGLLASGQPNKGVARILGLSTKTIEAHRARALKRLNVRTTADLIRVAIEAGL 217


>gi|260461884|ref|ZP_05810129.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259032131|gb|EEW33397.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 219

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + LT ++T  L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+    
Sbjct: 149 RLQALTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLS 208

Query: 230 RFG 232
           + G
Sbjct: 209 KIG 211


>gi|255009628|ref|ZP_05281754.1| putative DNA-binding response regulator [Bacteroides fragilis
           3_1_12]
 gi|313147410|ref|ZP_07809603.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313136177|gb|EFR53537.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 202

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++EIAEKL LS+HTV  +  + + KL   +       AI  
Sbjct: 132 EALSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVN 191

Query: 232 GYI 234
             +
Sbjct: 192 KLV 194


>gi|115377388|ref|ZP_01464593.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|310824785|ref|YP_003957143.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115365599|gb|EAU64629.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309397857|gb|ADO75316.1| Response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 223

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 156 VITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           + +  +E+ +   +    L T R+   L+    G  + +IA  L ++  TV A++ S   
Sbjct: 139 LFSARVEVSEAVDATGVRLLTPRQFEVLRYISTGADNLKIAACLNITERTVKAHITSIYQ 198

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL   NR Q    A + G 
Sbjct: 199 KLKVENRTQMAMLACQLGL 217


>gi|326800940|ref|YP_004318759.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551704|gb|ADZ80089.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 213

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L + +      LT+RE   L +  +G T+  +AE L LS  TV  +  +   K +  N  
Sbjct: 144 LNELKGPP--QLTKREKQILSMIAEGKTTANMAETLFLSPLTVETHRRNLLQKFEVKNVA 201

Query: 223 QAIAKAIRFGYI 234
           + I +A++   +
Sbjct: 202 ELIKEALQQRLL 213


>gi|297563514|ref|YP_003682488.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847962|gb|ADH69982.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 995

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 7/221 (3%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           +  E   RL  + +           + +A  F      + E   +   S        E+ 
Sbjct: 774 NAAEAFFRLRALVHAAPGHGHPTMRLLTAPHFVEAATRMGETE-WARTSLAGYRRWAESV 832

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG--IAFPVRLGFHKNG 130
           G        +    ++    +     E++  L        +  A   + F   L   +  
Sbjct: 833 GSPSTLALAARGSGLLAAGDEACDHFENALALHRACGDDDVEHARTQLLFGAHLRRARLP 892

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAG 186
                  +  L +     A     Q   +   +              LT ++    +L  
Sbjct: 893 GRAREHLYNALESFERFGARLWVRQTRAELRAIGTAERGPDPVSTSELTAQQQQIARLVA 952

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +G T+ E+A  + +S  TV  +L     KL+  +R+     
Sbjct: 953 EGATNREVAAHMFISPRTVEHHLRGIFRKLNIRSRVDLARL 993


>gi|289575183|ref|ZP_06455410.1| predicted protein [Mycobacterium tuberculosis K85]
 gi|289539614|gb|EFD44192.1| predicted protein [Mycobacterium tuberculosis K85]
          Length = 68

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           T  E     L G+G +++EI  +L +S  TV+++L     KL   +R+Q   +A R G
Sbjct: 2   TPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 59


>gi|288958558|ref|YP_003448899.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910866|dbj|BAI72355.1| two-component response regulator [Azospirillum sp. B510]
          Length = 213

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A  A          +     +A   LT+R+   L+    G ++++IA +LGLS  TV  +
Sbjct: 129 ALTASMDAAPRRRSIEVTDRNAGYGLTQRQREVLECLRLGKSNKQIAYELGLSEGTVKIH 188

Query: 209 LGSATVKLDAVNRIQ 223
           + +    L   NR Q
Sbjct: 189 VTAIFKSLGVKNRTQ 203


>gi|312115840|ref|YP_004013436.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220969|gb|ADP72337.1| two component transcriptional regulator, LuxR family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 226

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           ++    LT ++   L + G G  +++IA +L +S  TV A++ +   KL   +R QA+ 
Sbjct: 151 AARLATLTPQQVRVLSMLGKGLLNKQIAYELSVSEATVKAHVSAILQKLGVDSRTQAVI 209


>gi|268322279|emb|CBH32801.1| putative regulatory gene [Streptomyces sp. C23201NS3]
          Length = 201

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LTER+   L+LA  G    EIA +L LS  TV  YL S T KL+A  R+ A+  A
Sbjct: 136 SPPPPLTERQLEILRLAAAGDGVPEIAARLHLSPGTVRNYLSSVTTKLNARTRMDAVRIA 195

Query: 229 IRFGYI 234
              G++
Sbjct: 196 ADAGWL 201


>gi|239943901|ref|ZP_04695838.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 260

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L+ RE   + L   G ++++IA    +S  TV  ++     KL +  R +AIA
Sbjct: 193 GLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSATRSEAIA 246


>gi|219847184|ref|YP_002461617.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219541443|gb|ACL23181.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 219

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + G  I   +  +   E + +      ++          R      LTERE   L L 
Sbjct: 105 ARQYGADIALQKERLNNFEELEDCVLRAIEIAR-----SPTRQRTYEPLTERERQILTLM 159

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G T  EIA+ L   V  V     +   KL   NR  A+A+A   G +
Sbjct: 160 AQGLTESEIADHLCWGVGVVKRDSRAIFDKLQVRNRAHAVARAYDLGIL 208


>gi|110805887|ref|YP_689407.1| response regulator [Shigella flexneri 5 str. 8401]
 gi|110615435|gb|ABF04102.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|323937189|gb|EGB33469.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
          Length = 206

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 129 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 188

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 189 THLAIRHGL 197


>gi|104783098|ref|YP_609596.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95112085|emb|CAK16812.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 216

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R QA     + 
Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210


>gi|319784914|ref|YP_004144390.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170802|gb|ADV14340.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 908

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             Q +          ++    LT+RE   L+   +G ++ +IA  L +S  TV  +L + 
Sbjct: 819 AAQAMPVATRKLTAPAAEKEQLTQREAELLRYLTEGMSNRDIALALSVSETTVKWHLKNI 878

Query: 213 TVKLDAVNRIQAIAKA 228
             KL   NR+QA+  A
Sbjct: 879 FGKLAVTNRVQAVRAA 894


>gi|152966473|ref|YP_001362257.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360990|gb|ABS03993.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 42/97 (43%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               A E +I        +           S A   L+ERE   ++L   G T+ E+  +
Sbjct: 119 RAAAAGESLISPAITVRLLQRFAAAAPAPDSRAGEMLSERELDVVRLVARGGTNAEVGAE 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S+ TV A+L S   KL A NR++  A A   G +
Sbjct: 179 LFISLGTVKAHLSSVQTKLSARNRVEVAAWAWENGVV 215


>gi|320532105|ref|ZP_08032984.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135680|gb|EFW27749.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 226

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS+A   LT+RE   ++   +G  + E A +L +S  TV  ++ +   KL   NR Q   
Sbjct: 158 RSTAFAALTDREYEVVEAVAEGLDNAEAAARLFVSEGTVRNHISAILAKLGLRNRTQVAV 217

Query: 227 KAIR 230
              R
Sbjct: 218 MYYR 221


>gi|253798434|ref|YP_003031435.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 1435]
 gi|289553722|ref|ZP_06442932.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 605]
 gi|297635092|ref|ZP_06952872.1| transcriptional regulator, luxR-family protein [Mycobacterium
            tuberculosis KZN 4207]
 gi|297732083|ref|ZP_06961201.1| transcriptional regulator, luxR-family protein [Mycobacterium
            tuberculosis KZN R506]
 gi|313659419|ref|ZP_07816299.1| transcriptional regulator, luxR-family protein [Mycobacterium
            tuberculosis KZN V2475]
 gi|253319937|gb|ACT24540.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 1435]
 gi|289438354|gb|EFD20847.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 605]
 gi|328458202|gb|AEB03625.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 4207]
          Length = 1137

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                        K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108

Query: 213  TVKLDAVNRIQAIAKAIRFG 232
              KL   +R+Q   +A R G
Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128


>gi|240173083|ref|ZP_04751741.1| LuxR family transcriptional regulator [Mycobacterium kansasii ATCC
            12478]
          Length = 1102

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 8/129 (6%)

Query: 108  LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELF- 164
                +     + F +    ++               +    A       + I        
Sbjct: 975  CRRRMGQ---VLFKIHQPDYEASVAGLRDTMGDNDFDAAWAAGATLSAEEAIGYAQRGRG 1031

Query: 165  --KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              K+ SS   +LT  E   ++L  +G  +++IA +L LS  TV A+L     KL   +R+
Sbjct: 1032 ERKRASSGWESLTPAELDVVRLVREGLGNKDIAGRLFLSPRTVQAHLTHVYTKLGLTSRV 1091

Query: 223  QAIAKAIRF 231
            Q   +A R 
Sbjct: 1092 QLAQEAARR 1100


>gi|29828772|ref|NP_823406.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605877|dbj|BAC69941.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 220

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183
                  + T     L       A                  S     R L+ RE   L+
Sbjct: 109 AGGVKGYVVTGTRTNLGLPTRPGAAPIGSAAARMHRRPPGAPSHPGGYRELSGREVEVLR 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G +++ I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|78045671|ref|YP_361846.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034101|emb|CAJ21746.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 210

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F+ + +      ERE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 135 RARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 195 RDRTRAVLKAITLRVI 210


>gi|116669051|ref|YP_829984.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116609160|gb|ABK01884.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 208

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 9/149 (6%)

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                L P +              +   +L       A + F            +     
Sbjct: 43  ALTEQLSPAVVMMDLAMGPGMDGIEAIKQLRRRNARQAVLVFTTYDSDADIVRAVDAGAM 102

Query: 139 L----MLANEVIIEAHGACYQ---VITD--FLELFKKRSSAARNLTERETSCLQLAGDGY 189
                  A + I  A     Q   V++      LF++  +    LT RE   L L  +G 
Sbjct: 103 GYLLKDAAPDEIFAAVRGAVQGRSVMSAPVASRLFQQLRNPDEILTPREAELLSLLTEGL 162

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           ++ E+ ++L +S  TV  +L     KL  
Sbjct: 163 SNRELGQRLFISEATVKTHLAHIYAKLGV 191


>gi|152966610|ref|YP_001362394.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361127|gb|ABS04130.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 215

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   ++    G  +++IAE + +S  TV  +   A  K+ A +R Q ++ A+R G
Sbjct: 153 ALTAREREVVEAIVTGLDNQQIAEAMFVSPFTVKTHANRAMSKVGARDRAQLVSMAVRAG 212

Query: 233 Y 233
            
Sbjct: 213 M 213


>gi|269126233|ref|YP_003299603.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268311191|gb|ACY97565.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 956

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 44/164 (26%), Gaps = 8/164 (4%)

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D    H      P                   +   G     AG         
Sbjct: 784 ETNLALADLARAHALRPTDPAAAAEHAHRAAEVLQDAGHLLDAGRARLRAG---TAHADA 840

Query: 127 HKNG-----YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
                           F       +        +     +     R S    L+ RE   
Sbjct: 841 GDRAKAREQLRAAAEIFRRAGARPLHALALREQRRSGIRVPSGGGRGSGPGGLSPRELEV 900

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +L  +G T+++IAE+L LS+ TV  +L +   KL   +R+  +
Sbjct: 901 ARLVMEGCTNQQIAERLFLSIRTVETHLSNIFAKLGVGSRVAMV 944


>gi|254183317|ref|ZP_04889909.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1655]
 gi|184213850|gb|EDU10893.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1655]
          Length = 273

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 45  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 97  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 +       +          +   L   +  +R + 
Sbjct: 154 VEVLLRDGGAVLAAFSLLRLACDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268


>gi|118589368|ref|ZP_01546774.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118438068|gb|EAV44703.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 227

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LT ++   L +  +G  +++IA +L +S  TV A++ +   KL   +R QA+  A
Sbjct: 152 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAA 206


>gi|328947302|ref|YP_004364639.1| LuxR family transcriptional regulator [Treponema succinifaciens DSM
           2489]
 gi|328447626|gb|AEB13342.1| transcriptional regulator, LuxR family [Treponema succinifaciens
           DSM 2489]
          Length = 726

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +K     + L+ RE    +L   G + ++IAE+L +S  TV ++      KL+  +R++
Sbjct: 661 EEKSEDFMKKLSSREKQIAELMISGKSDKDIAEELFISPGTVASHNKKIFKKLEVHSRVE 720

Query: 224 AIAK 227
            + K
Sbjct: 721 LMNK 724


>gi|260205795|ref|ZP_05773286.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            K85]
 gi|289575185|ref|ZP_06455412.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            K85]
 gi|289539616|gb|EFD44194.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            K85]
          Length = 1137

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                        K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108

Query: 213  TVKLDAVNRIQAIAKAIRFG 232
              KL   +R+Q   +A R G
Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128


>gi|170780916|ref|YP_001709248.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155484|emb|CAQ00593.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 206

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  +   +L+ RE   L+L  DG ++ ++A +L ++  TV ++L     KL   +R
Sbjct: 133 RLLARMRAPRVSLSSREIEVLRLVADGASNTDVAARLHITDATVKSHLVHVFSKLGVSSR 192

Query: 222 IQAIAKAIRFGYI 234
             A+A A   G +
Sbjct: 193 TAAVAAAREMGVL 205


>gi|158334732|ref|YP_001515904.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158304973|gb|ABW26590.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 123 RLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSA------ARNL 174
            L     GY++ ++    LA    ++ + H      I   +    +             L
Sbjct: 93  SLQAGALGYLLKSTPASQLAAAIRMLHDGHFQLGPTIAPKVIAQLRPPPLKNEQNHLERL 152

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           ++RE   L L G G ++ EI++ L L+  TV  Y+      L   +R QA   A +
Sbjct: 153 SDRELDVLNLIGQGKSNREISQILHLTEGTVKNYVSQLLGSLGVRDRTQAALWAQQ 208


>gi|15609625|ref|NP_217004.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Rv]
 gi|31793667|ref|NP_856160.1| LuxR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 gi|148662323|ref|YP_001283846.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|148823685|ref|YP_001288439.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            F11]
 gi|215404423|ref|ZP_03416604.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            02_1987]
 gi|306804237|ref|ZP_07440905.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu008]
 gi|306808806|ref|ZP_07445474.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu007]
 gi|306968638|ref|ZP_07481299.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu009]
 gi|306972870|ref|ZP_07485531.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu010]
 gi|2791528|emb|CAA16065.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY)
            [Mycobacterium tuberculosis H37Rv]
 gi|31619260|emb|CAD97376.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY)
            [Mycobacterium bovis AF2122/97]
 gi|148506475|gb|ABQ74284.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|148722212|gb|ABR06837.1| hypothetical transcriptional regulatory protein, luxR-family
            [Mycobacterium tuberculosis F11]
 gi|308344853|gb|EFP33704.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu007]
 gi|308349163|gb|EFP38014.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu008]
 gi|308353782|gb|EFP42633.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu009]
 gi|308357727|gb|EFP46578.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu010]
          Length = 1137

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                        K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108

Query: 213  TVKLDAVNRIQAIAKAIRFG 232
              KL   +R+Q   +A R G
Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128


>gi|186687174|ref|YP_001870317.1| two component LuxR family transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186469477|gb|ACC85276.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 210

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V +         +S    L++RE   L+L G G  ++EIA++L LS  TV  Y+  
Sbjct: 129 IALKVFSQLKSSQPSPNSYQDLLSKREIGVLKLVGQGRNNQEIAQELHLSEGTVKNYVTQ 188

Query: 212 ATVKLDAVNRIQAIAK 227
              KL+  +RIQA   
Sbjct: 189 ILNKLEMRDRIQAALW 204


>gi|291575304|gb|ADE10229.1| LigR [Actinoplanes liguriensis]
          Length = 218

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 39/79 (49%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           ++++T   +   + S+   + T RE     L   G ++ EIA++L L+  T+  ++G   
Sbjct: 136 HRLVTAHRQHPARPSALLDSFTTREREVFDLIVAGASNAEIADRLNLAEVTIKTHVGRVL 195

Query: 214 VKLDAVNRIQAIAKAIRFG 232
            K+   +R+  +  A R G
Sbjct: 196 AKIGVRDRVNVVIWAYRNG 214


>gi|295840294|ref|ZP_06827227.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295827900|gb|EFG65696.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 231

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               +      +     +   A GA  +   D     +  S     LT RE   L+L  +
Sbjct: 124 DRDLIEACRAAMRDEPFLYPGATGALIRNYLDRARRGEDLSG-GSPLTPREEEILKLVAE 182

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G++S++IA  L +SV TV  +  +   KL   +R++    AIR G +
Sbjct: 183 GHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 229


>gi|294994407|ref|ZP_06800098.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            210]
 gi|326904100|gb|EGE51033.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            W-148]
          Length = 1137

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                        K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108

Query: 213  TVKLDAVNRIQAIAKAIRFG 232
              KL   +R+Q   +A R G
Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128


>gi|271968535|ref|YP_003342731.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511710|gb|ACZ89988.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 2/133 (1%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +         AG +  +         +            V         +     L  
Sbjct: 85  FDLDEYAFAGLKAGASGFLLKNALPEELLAAIRNVAAGDAAVSPRITRRLLENFAHQLPT 144

Query: 164 --FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                 +   + LT RE   L     G ++ EIA  L L+  TV  +LG   +KL+  +R
Sbjct: 145 GGAPASAERLQRLTPREREVLIEVARGLSNTEIAAGLHLAEATVKTHLGRILLKLELRDR 204

Query: 222 IQAIAKAIRFGYI 234
           +QA+  A     I
Sbjct: 205 VQAVVFAYEARLI 217


>gi|256826810|ref|YP_003150769.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582953|gb|ACU94087.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 470

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           R    R LTERE   L+L   G +   IA+ L +S +TV ++      KLD  +R +A
Sbjct: 407 RIGRERGLTEREVEVLELLCRGRSKNYIADTLFISENTVRSHARHIYRKLDVHSRQEA 464


>gi|145224867|ref|YP_001135545.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK]
 gi|145217353|gb|ABP46757.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK]
          Length = 519

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +       E  ++   A   V++      ++ S+    LT RE   L L   G +++EI
Sbjct: 418 ATRLRDRVREGHLD-ELAVDAVLSAAGHAARRVSARPGGLTPREIEVLCLVARGASNKEI 476

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  T   ++     K+ A NRI A   A+  G I
Sbjct: 477 AATLGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516


>gi|121638369|ref|YP_978593.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|224990863|ref|YP_002645550.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
 gi|121494017|emb|CAL72495.1| Probable transcriptional regulatory protein (luxR-family)
            [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224773976|dbj|BAH26782.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
          Length = 1137

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                        K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 1049 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 1108

Query: 213  TVKLDAVNRIQAIAKAIRFG 232
              KL   +R+Q   +A R G
Sbjct: 1109 YTKLGLSSRLQLAQQAARRG 1128


>gi|89893631|ref|YP_517118.1| hypothetical protein DSY0885 [Desulfitobacterium hafniense Y51]
 gi|89333079|dbj|BAE82674.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG--------ACYQVITDFLELFKKRSSAARNL 174
            L     GY+  ++    L   + + A G             +   L   +K       L
Sbjct: 104 FLDAGGCGYLHKSAADTDLIRAIRMAAQGQVFLRPEGLAVLTVQQKLNKKQKHCGGEPVL 163

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           TERET  L +   GYTS+EI EKL ++  TV+ Y      KL+   R Q +  AI
Sbjct: 164 TERETQVLGMVARGYTSKEIGEKLYIAPSTVDTYRERLIKKLEFTTRAQLVDYAI 218


>gi|83944309|ref|ZP_00956764.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
 gi|83953350|ref|ZP_00962072.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83842318|gb|EAP81486.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83844853|gb|EAP82735.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
          Length = 206

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + +   + L+ERE   L+   +  +++EIA  L L   T+  ++ +   KLDA NR  
Sbjct: 136 DPEETDFEKALSERERQVLRGLMEAKSNKEIARDLELQEVTIKLHVKTLCRKLDARNRTD 195

Query: 224 AIAKAIRFGYI 234
           A   A   G+I
Sbjct: 196 AAMIARSAGFI 206


>gi|119714214|ref|YP_919356.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119526123|gb|ABL79493.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 567

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARN--LTERETSCL 182
             ++  V        L     + A     Q      EL  K R+       L+ RE   L
Sbjct: 446 ADRDRGVAVAEARSALQAFDRMGATSEADQAAAFLRELGIKGRTGPRDGAVLSRREQEVL 505

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            L  +G ++ EIAE+L +SV T   ++G+   KL   +R +A A A+
Sbjct: 506 GLVVEGLSNAEIAERLFISVKTAGHHVGNILTKLGVRSRTEATAYAL 552


>gi|157283845|ref|YP_001468113.1| two component LuxR family transcriptional regulator [Kineococcus
           radiotolerans SRS30216]
 gi|151362987|gb|ABS05989.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 241

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ RE   LQL  +G  +++IA  LG+S HTV  ++G    +L    R  A   A  
Sbjct: 174 ATGLSGREHEVLQLIAEGLANKQIARSLGISEHTVKVHVGRILRQLGVSGRTAAAVWARE 233

Query: 231 F 231
            
Sbjct: 234 H 234


>gi|291515940|emb|CBK65150.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 192

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 41/97 (42%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            +    E  + +       +         +  AA+ LTERE   L L   G  ++++A++
Sbjct: 91  DVQTDEERFVRSLMRLQHSVRRPEHALPVQPQAAQPLTEREAEVLTLIAGGLINKQVADR 150

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LG+ + TV ++  +   KL        +  A+  GY+
Sbjct: 151 LGIGLTTVISHRRNIMEKLGIRTAAGLVVYALAAGYV 187


>gi|224536197|ref|ZP_03676736.1| hypothetical protein BACCELL_01063 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522181|gb|EEF91286.1| hypothetical protein BACCELL_01063 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 255

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              +LT+RE   LQL   G  S+EIA  L +S+HTVN +  +   KL   N I+AI   +
Sbjct: 190 PRIHLTQRELEILQLIQKGLLSKEIAHNLCISIHTVNIHRQNLLHKLGVQNSIEAINAGL 249

Query: 230 RFGYI 234
           + G +
Sbjct: 250 KSGIL 254


>gi|167849200|ref|ZP_02474708.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
          Length = 273

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 45  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 97  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRRHGVVDV 153

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 +       +          +   L   +  +R + 
Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268


>gi|50086430|ref|YP_047940.1| putative two-component response regulator [Acinetobacter sp. ADP1]
 gi|49532406|emb|CAG70118.1| putative two-component response regulator [Acinetobacter sp. ADP1]
          Length = 216

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                    + +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 135 FDPRASDETELAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 195 GVQNRTQAV 203


>gi|329927577|ref|ZP_08281740.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938366|gb|EGG34756.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 201

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   ++LA  G   ++I  +L LS  TV  Y+  A  KL A  RI+AI  A   G
Sbjct: 139 PLSPREREVMKLAAQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKG 198

Query: 233 YI 234
           ++
Sbjct: 199 WL 200


>gi|271966300|ref|YP_003340496.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509475|gb|ACZ87753.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 172

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLA 185
                + T        +         +  +   L   + + R      LT+RE   L L 
Sbjct: 63  GLHAQLMTQAREAGVLDERQRMAREIHDTLAQGLTGIIPQLRRPVRATLTDREMQVLTLV 122

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG ++ + A KL +S  ++  +L     KLD   R  A+ +A R G +
Sbjct: 123 ADGASNRQAAAKLFISEASIKTHLLHIYDKLDVRYRAAAVGEAYRRGLL 171


>gi|226357726|ref|YP_002787465.1| transcriptional regulator, LuxR family, sensory transduction
           protein liaR [Deinococcus deserti VCD115]
 gi|226319968|gb|ACO47961.1| putative transcriptional regulator, LuxR family, putative sensory
           transduction protein liaR [Deinococcus deserti VCD115]
          Length = 210

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +       L+ RE   L+L  DG  + EI  +L +SV +V  ++     KL A +R QA 
Sbjct: 142 RTPGVPVELSARELEVLRLIADGLGNREIGMQLEISVSSVKLHVQDLLEKLQASDRTQAA 201

Query: 226 AKAIRFGYI 234
            KA+R G +
Sbjct: 202 VKALRQGLL 210


>gi|54025004|ref|YP_119246.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016512|dbj|BAD57882.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 218

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 43/96 (44%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            + A    + A     ++I  F+            LT RE   + LA  G +++EIAE++
Sbjct: 118 RVAARGDALLAPSITRRLIDRFVTEPLAADVETAGLTTREREAVVLAARGLSNDEIAERM 177

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S  T   ++  A  KL A +R Q + +A   G +
Sbjct: 178 VISPLTAKTHINRAMTKLHARDRAQLVIRAYESGLV 213


>gi|271499136|ref|YP_003332161.1| LuxR family two component transcriptional regulator [Dickeya
           dadantii Ech586]
 gi|270342691|gb|ACZ75456.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech586]
          Length = 196

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L     G++        L   V   A G CY      L+L   R      LT RE    +
Sbjct: 91  LNAGARGFLSKRCSPDELIAAVRTVAGGGCYLTPDIALKLASGRR---DPLTRRERQVAE 147

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               G   + IA +LGLS  TV+ +  +   KL   N ++   +
Sbjct: 148 KLAQGMAVKTIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|227833657|ref|YP_002835364.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184663|ref|ZP_06044084.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454673|gb|ACP33426.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 215

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 16/122 (13%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSS----------A 170
           L     G+++ T E   L   V   A        + + + L L +   +           
Sbjct: 94  LHAGAMGFLLKTIEPEGLVLAVRAAATGQQLLSPKALKNLLALKRPEPAPAEPEALEARP 153

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ---AIAK 227
              L++RE    QL   G  ++EIA +L +SV TV  ++     KL   NR+    A+ +
Sbjct: 154 LEGLSQRENEVAQLVAQGLDNQEIAGQLYVSVTTVKTHIKHILDKLGGTNRVHIAIAVLE 213

Query: 228 AI 229
           A 
Sbjct: 214 AR 215


>gi|269862236|ref|XP_002650758.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
 gi|220065658|gb|EED43295.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
          Length = 119

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
              +     F  + +  A            +V+  +         +  +LT R+   L L
Sbjct: 1   SRSRPSADGFIGKNVDPAGIAEAILAIREGEVVVKYNPENPLLDPSLASLTARQRQVLGL 60

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
              G T++EIA++LG+S  TV  ++ +    L    R  A A
Sbjct: 61  VAAGKTNKEIAKQLGISPFTVRIHVSTLLKSLGVPTRAAAAA 102


>gi|167897798|ref|ZP_02485200.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
          Length = 273

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S+       + +LQ     L  +           Y I+++      + +  EL      
Sbjct: 45  LSDADAAPSYARALQACVGSLQALARPTAT---VFYRIDASG-----EPVDFELFGMTAA 96

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQLSVRLEGGLLPFAG 117
                        D        S    ++     + +E    S                 
Sbjct: 97  MHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDTS--SYWTGFLRQHGVVDV 153

Query: 118 IAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSA 170
           +   +R G                 +       +          +   L   +  +R + 
Sbjct: 154 VEVLLRDGGAVLAAFSLLRLAGDGRYSAPEIAALRAVQPVVEAALLPPLRAVRGIRRIAC 213

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 214 DVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 268


>gi|167829868|ref|ZP_02461339.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
          Length = 89

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  +  LT +E   L+L G   +++EIA  + +   TV  +L +   KLDA +R  A+
Sbjct: 17  PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 76

Query: 226 AKAIRFGYI 234
            +A+  G +
Sbjct: 77  RRALVLGLL 85


>gi|167851367|ref|ZP_02476875.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|254296620|ref|ZP_04964076.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157806503|gb|EDO83673.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
          Length = 215

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|324998336|ref|ZP_08119448.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 224

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTE------ 176
           G           + L+ A   +   +G     +T  +  E  ++R +             
Sbjct: 98  GAGGFVLKDTGPDDLVHAVRRLAAGYGLVDHAVTRRVITEFARRRPAPDELPPVPVTPLT 157

Query: 177 -RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE+  ++L   G ++ EIA++L + + TV ++LG A  K+ A +R+Q +  A R G 
Sbjct: 158 PRESEIVRLLARGMSNAEIADELVVELSTVKSHLGRAMAKIGARDRVQTVVWAYRSGI 215


>gi|269102423|ref|ZP_06155120.1| transcriptional regulator VpsT [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162321|gb|EEZ40817.1| transcriptional regulator VpsT [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 219

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +       LT RE   L L  +G T+ EIAE L ++  TV +++ +   K+D   R +
Sbjct: 146 DTRLLPTQPLLTRREKQILGLLTEGKTNIEIAETLFVAETTVKSHIYNLYKKIDVKCRKE 205

Query: 224 AIAKAIRF 231
           AI K  + 
Sbjct: 206 AIFKVKQL 213


>gi|227498188|ref|ZP_03928359.1| two-component system response regulator [Actinomyces urogenitalis
           DSM 15434]
 gi|226832414|gb|EEH64797.1| two-component system response regulator [Actinomyces urogenitalis
           DSM 15434]
          Length = 246

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 135 TSEFLMLANEVIIEAHGACYQVI----TDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
           T   L          H A    +       +       +    LT RE   L+L   G +
Sbjct: 132 TRRLLAAVRGGASSLHAAPASALHSDPGQVITAEGTPPADLSGLTHREREILRLIALGLS 191

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++E+ ++L LS+ TV  ++     K  A +R+  +  A+R G
Sbjct: 192 NQELCDRLWLSMPTVKTHVSHLLAKTGARDRVHLVLTALRCG 233


>gi|329911478|ref|ZP_08275542.1| DNA binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545881|gb|EGF30991.1| DNA binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 214

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + +  + ++AH +    + +F        +    L+ERE         G +  +IA  
Sbjct: 120 RQVASGRMYLDAHVSQRLALQEF----DGAKNPLEILSEREFGVFIQLAKGLSVNQIAVD 175

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S  T   +L     KL A N+ +    A+R G I
Sbjct: 176 LNISPRTAGTHLYHVKQKLGAGNQAELALIAVRHGLI 212


>gi|291299471|ref|YP_003510749.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568691|gb|ADD41656.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 36/85 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A         D      +  S    LTERET  L   G+G ++ EI ++L LS  TV  Y
Sbjct: 129 AARRMVAASADEQSTRDELRSLVGELTERETEVLARLGEGLSNAEIGKRLYLSEATVKGY 188

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           +    +KL   NR QA   A   G 
Sbjct: 189 VSRLLLKLGCDNRTQAGLLARDAGL 213


>gi|218548549|ref|YP_002382340.1| response regulator [Escherichia fergusonii ATCC 35469]
 gi|218356090|emb|CAQ88707.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia fergusonii ATCC 35469]
 gi|324113632|gb|EGC07607.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325496966|gb|EGC94825.1| response regulator [Escherichia fergusonii ECD227]
          Length = 218

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 129 IAQQMALSQIEPEKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209


>gi|170769412|ref|ZP_02903865.1| response regulator UvrY [Escherichia albertii TW07627]
 gi|170121736|gb|EDS90667.1| response regulator UvrY [Escherichia albertii TW07627]
          Length = 218

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|16129861|ref|NP_416424.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. MG1655]
 gi|24113291|ref|NP_707801.1| response regulator [Shigella flexneri 2a str. 301]
 gi|30063358|ref|NP_837529.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|74311740|ref|YP_310159.1| response regulator [Shigella sonnei Ss046]
 gi|82543618|ref|YP_407565.1| response regulator [Shigella boydii Sb227]
 gi|89108749|ref|AP_002529.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. W3110]
 gi|157156123|ref|YP_001463217.1| response regulator [Escherichia coli E24377A]
 gi|170081562|ref|YP_001730882.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. DH10B]
 gi|170683562|ref|YP_001743330.1| response regulator [Escherichia coli SMS-3-5]
 gi|187731168|ref|YP_001879702.1| response regulator [Shigella boydii CDC 3083-94]
 gi|188492627|ref|ZP_02999897.1| response regulator UvrY [Escherichia coli 53638]
 gi|191168291|ref|ZP_03030084.1| response regulator UvrY [Escherichia coli B7A]
 gi|193066390|ref|ZP_03047438.1| response regulator UvrY [Escherichia coli E22]
 gi|193071129|ref|ZP_03052053.1| response regulator UvrY [Escherichia coli E110019]
 gi|194429924|ref|ZP_03062434.1| response regulator UvrY [Escherichia coli B171]
 gi|194439584|ref|ZP_03071657.1| response regulator UvrY [Escherichia coli 101-1]
 gi|209919335|ref|YP_002293419.1| response regulator [Escherichia coli SE11]
 gi|218554497|ref|YP_002387410.1| response regulator [Escherichia coli IAI1]
 gi|218695520|ref|YP_002403187.1| response regulator [Escherichia coli 55989]
 gi|238901123|ref|YP_002926919.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli BW2952]
 gi|253773134|ref|YP_003035965.1| response regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|256017889|ref|ZP_05431754.1| response regulator [Shigella sp. D9]
 gi|256022428|ref|ZP_05436293.1| response regulator [Escherichia sp. 4_1_40B]
 gi|260844318|ref|YP_003222096.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O103:H2 str. 12009]
 gi|293446296|ref|ZP_06662718.1| two-component system [Escherichia coli B088]
 gi|300818663|ref|ZP_07098871.1| response regulator UvrY [Escherichia coli MS 107-1]
 gi|300822315|ref|ZP_07102456.1| response regulator UvrY [Escherichia coli MS 119-7]
 gi|300917355|ref|ZP_07134024.1| response regulator UvrY [Escherichia coli MS 115-1]
 gi|300925005|ref|ZP_07140929.1| response regulator UvrY [Escherichia coli MS 182-1]
 gi|301029364|ref|ZP_07192461.1| response regulator UvrY [Escherichia coli MS 196-1]
 gi|301327703|ref|ZP_07220909.1| response regulator UvrY [Escherichia coli MS 78-1]
 gi|301645569|ref|ZP_07245498.1| response regulator UvrY [Escherichia coli MS 146-1]
 gi|307138580|ref|ZP_07497936.1| response regulator [Escherichia coli H736]
 gi|309795977|ref|ZP_07690390.1| response regulator UvrY [Escherichia coli MS 145-7]
 gi|312973876|ref|ZP_07788048.1| response regulator [Escherichia coli 1827-70]
 gi|331642535|ref|ZP_08343670.1| response regulator UvrY [Escherichia coli H736]
 gi|331653320|ref|ZP_08354325.1| response regulator UvrY [Escherichia coli M718]
 gi|331668607|ref|ZP_08369455.1| response regulator UvrY [Escherichia coli TA271]
 gi|331677798|ref|ZP_08378473.1| response regulator UvrY [Escherichia coli H591]
 gi|331683465|ref|ZP_08384066.1| response regulator UvrY [Escherichia coli H299]
 gi|332278916|ref|ZP_08391329.1| DNA-binding response regulator in two-component system response
           regulatory system with BarA [Shigella sp. D9]
 gi|83288180|sp|P0AED5|UVRY_ECOLI RecName: Full=Response regulator uvrY
 gi|83288181|sp|P0AED6|UVRY_SHIFL RecName: Full=Response regulator uvrY
 gi|551848|gb|AAA24755.1| 24 kD protein (ttg start codon) [Escherichia coli]
 gi|581252|emb|CAA28982.1| unnamed protein product [Escherichia coli]
 gi|1736573|dbj|BAA15734.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K12 substr. W3110]
 gi|1788222|gb|AAC74981.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. MG1655]
 gi|24052298|gb|AAN43508.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30041610|gb|AAP17338.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|73855217|gb|AAZ87924.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
 gi|81245029|gb|ABB65737.1| putative 2-component transcriptional regulator [Shigella boydii
           Sb227]
 gi|157078153|gb|ABV17861.1| response regulator UvrY [Escherichia coli E24377A]
 gi|169889397|gb|ACB03104.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. DH10B]
 gi|170521280|gb|ACB19458.1| response regulator UvrY [Escherichia coli SMS-3-5]
 gi|187428160|gb|ACD07434.1| response regulator UvrY [Shigella boydii CDC 3083-94]
 gi|188487826|gb|EDU62929.1| response regulator UvrY [Escherichia coli 53638]
 gi|190901663|gb|EDV61419.1| response regulator UvrY [Escherichia coli B7A]
 gi|192925975|gb|EDV80621.1| response regulator UvrY [Escherichia coli E22]
 gi|192955524|gb|EDV86003.1| response regulator UvrY [Escherichia coli E110019]
 gi|194412013|gb|EDX28325.1| response regulator UvrY [Escherichia coli B171]
 gi|194421493|gb|EDX37507.1| response regulator UvrY [Escherichia coli 101-1]
 gi|209912594|dbj|BAG77668.1| two-component response regulator [Escherichia coli SE11]
 gi|218352252|emb|CAU98008.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli 55989]
 gi|218361265|emb|CAQ98849.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli IAI1]
 gi|238860856|gb|ACR62854.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli BW2952]
 gi|253324178|gb|ACT28780.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|257759465|dbj|BAI30962.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O103:H2 str. 12009]
 gi|260448969|gb|ACX39391.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|281601356|gb|ADA74340.1| Response regulator uvrY [Shigella flexneri 2002017]
 gi|291323126|gb|EFE62554.1| two-component system [Escherichia coli B088]
 gi|299877790|gb|EFI86001.1| response regulator UvrY [Escherichia coli MS 196-1]
 gi|300415401|gb|EFJ98711.1| response regulator UvrY [Escherichia coli MS 115-1]
 gi|300418840|gb|EFK02151.1| response regulator UvrY [Escherichia coli MS 182-1]
 gi|300525198|gb|EFK46267.1| response regulator UvrY [Escherichia coli MS 119-7]
 gi|300528835|gb|EFK49897.1| response regulator UvrY [Escherichia coli MS 107-1]
 gi|300845747|gb|EFK73507.1| response regulator UvrY [Escherichia coli MS 78-1]
 gi|301076101|gb|EFK90907.1| response regulator UvrY [Escherichia coli MS 146-1]
 gi|308120427|gb|EFO57689.1| response regulator UvrY [Escherichia coli MS 145-7]
 gi|309702209|emb|CBJ01525.1| response regulator [Escherichia coli ETEC H10407]
 gi|310332471|gb|EFP99706.1| response regulator [Escherichia coli 1827-70]
 gi|313650131|gb|EFS14544.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|315061214|gb|ADT75541.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli W]
 gi|315136551|dbj|BAJ43710.1| response regulator [Escherichia coli DH1]
 gi|320176083|gb|EFW51151.1| response regulator [Shigella dysenteriae CDC 74-1112]
 gi|320178184|gb|EFW53161.1| response regulator [Shigella boydii ATCC 9905]
 gi|320198607|gb|EFW73207.1| response regulator [Escherichia coli EC4100B]
 gi|323378209|gb|ADX50477.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|323948205|gb|EGB44193.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323972723|gb|EGB67924.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324017949|gb|EGB87168.1| response regulator UvrY [Escherichia coli MS 117-3]
 gi|324118968|gb|EGC12857.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331039333|gb|EGI11553.1| response regulator UvrY [Escherichia coli H736]
 gi|331049418|gb|EGI21490.1| response regulator UvrY [Escherichia coli M718]
 gi|331063801|gb|EGI35712.1| response regulator UvrY [Escherichia coli TA271]
 gi|331074258|gb|EGI45578.1| response regulator UvrY [Escherichia coli H591]
 gi|331079680|gb|EGI50877.1| response regulator UvrY [Escherichia coli H299]
 gi|332096759|gb|EGJ01750.1| response regulator [Shigella boydii 3594-74]
 gi|332101268|gb|EGJ04614.1| DNA-binding response regulator in two-component system response
           regulatory system with BarA [Shigella sp. D9]
 gi|332343639|gb|AEE56973.1| response regulator [Escherichia coli UMNK88]
          Length = 218

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|330999483|ref|ZP_08323197.1| putative transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
 gi|329574909|gb|EGG56468.1| putative transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
             I EA           LE  ++   A ++LT RE    +LA  G +++EIA  L ++V 
Sbjct: 124 RTIEEACRLSLDNFGASLE-DREVIKAFKSLTPREKEIFELAAGGKSNKEIASDLDIAVA 182

Query: 204 TVNAYLGSATVKLDAVNRIQAIAK 227
           TV  +  +A  K+   + I+A+ K
Sbjct: 183 TVKMHRANAFEKMSVHSSIEALHK 206


>gi|329948449|ref|ZP_08295174.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328522072|gb|EGF49192.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 240

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L+ +V+          +          +     LT R+   L L   G ++ EI  +LG+
Sbjct: 145 LSPQVLARLMARMPHTVAAGAS-DGSWAEDVEALTPRQREVLLLIARGLSNSEIEAELGI 203

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  T  +++ +   +LDA +R Q +  A   G I
Sbjct: 204 TRATCRSHITALLARLDARDRAQLVIAAYETGLI 237


>gi|317126429|ref|YP_004100541.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590517|gb|ADU49814.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 4/112 (3%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE----LFKKRSSAARNLTE 176
            V  G         + E ++ A   +              L       ++     + L+ 
Sbjct: 102 SVLAGASGYLLKQLSGEGIVAAIRRVAAGEDLSDHPHAKALRDRWAAREEHDPRLKALSP 161

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            E   L L  +G T+ ++ ++L L+  TV  Y+ S   K+    R QA   A
Sbjct: 162 VERRILDLIAEGLTNRQVGDRLHLAEKTVKNYVSSVLSKMGMETRTQAAVYA 213


>gi|262165477|ref|ZP_06033214.1| BarA-associated response regulator UvrY [Vibrio mimicus VM223]
 gi|262171754|ref|ZP_06039432.1| BarA-associated response regulator UvrY [Vibrio mimicus MB-451]
 gi|261892830|gb|EEY38816.1| BarA-associated response regulator UvrY [Vibrio mimicus MB-451]
 gi|262025193|gb|EEY43861.1| BarA-associated response regulator UvrY [Vibrio mimicus VM223]
          Length = 188

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 107 MALSQFSPASENPFADLSERELQIMLMITKGQKVTEISEQLSLSPKTVNSYRYRLFAKLN 166

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 167 INGDVELTHLAIRHGIL 183


>gi|256829662|ref|YP_003158390.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578838|gb|ACU89974.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 222

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K      +LT RE   ++L  DG  S+EIA+ L +SV TV+ +  +   KL   N    
Sbjct: 145 RKSLPPLADLTVREKEIVRLVIDGKKSKEIADTLFISVKTVHKHRSNILEKLGLNNLADL 204


>gi|221210485|ref|ZP_03583465.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD1]
 gi|221169441|gb|EEE01908.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD1]
          Length = 214

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211


>gi|207742850|ref|YP_002259242.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609]
 gi|206594244|emb|CAQ61171.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609]
          Length = 252

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 11/201 (5%)

Query: 36  YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95
              +  +             ++ ++       +        +  + +   P+ +      
Sbjct: 40  VCSHGRITAAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAA 96

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--------NEVII 147
             +    +  +           +A  V    H  G        + +          ++  
Sbjct: 97  APVAEIDRGWLAKFIAYDLRNAVADGVYDEGHCIGTYFSFHRLVSVNEPFLASVLRDLTP 156

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
             H    + + D  + +         L+ERE       G G ++ EIA    +S +TV  
Sbjct: 157 VLHRTLMRAVADTEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQ 216

Query: 208 YLGSATVKLDAVNRIQAIAKA 228
           +L     K    NR+     A
Sbjct: 217 HLKHIMDKTGCANRVGVAVLA 237


>gi|330809386|ref|YP_004353848.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377494|gb|AEA68844.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 245

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 20/226 (8%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             +  +   ++  N+ +   ++          I +    D          +    D F  
Sbjct: 11  SLVRTLNEYVQIDNWVVLIFSNQHVQVVSLPEIADAEEVDA-FIHRYVKGLYLL-DPFYI 68

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                     +  +          +   +     +      + V+L        I     
Sbjct: 69  ANRENPQSGFFHLLDIAPAYFLETEYYHKYFAQYISMDEAQYNVQL-DPDRTLCISIGSK 127

Query: 139 LMLANEVIIEAH----GACYQVITDF-LELFKKRSSAARNL------------TERETSC 181
           +  + E I             +      E+  +++ A   L            T RE+  
Sbjct: 128 VRFSQEQITMLDIIKPWVTALMHQRMGFEVDVEKTPAEPPLWPETVNQLGTQITARESDV 187

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+L   G++++EIA KL LS  T+  +  +   KL+  ++ +  A+
Sbjct: 188 LRLLLSGFSNKEIAGKLSLSAETIKVHRRNIYAKLNIKSQSELFAR 233


>gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT  E   +QL   G  + +IA+ + +S  T+ +++ +   K    NR +    A+ 
Sbjct: 155 LTPTELKVVQLVSQGLANRDIADVMNVSQRTIESHVSNMLGKTGLHNRTELARWALE 211


>gi|298290106|ref|YP_003692045.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926617|gb|ADH87426.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 205

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 7/113 (6%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----SAARNL 174
            P+ +   ++G + F         + ++E      +  +                    L
Sbjct: 88  IPMAVDAIRHGALDFI--EKPFDADTVVERVRDAIEAHSRRGSSEPGDLLTAHFPGHEML 145

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T RE   L     G +++E   KLG+S  T+  +      KL A N    +  
Sbjct: 146 TPREREVLVQIASGASNKEAGRKLGISPRTIEVHRARIMEKLGAKNAADLVRI 198


>gi|296158426|ref|ZP_06841257.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295891370|gb|EFG71157.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEE 193
           + ++ A   +   H    + + D L     + +       L+ERE         G    E
Sbjct: 109 DEIVRAIRAVARGHRYLSEALADTLADNLDKPAVGRPHEALSEREFQIFCKLAAGQIPTE 168

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IAE+L LSV TV+ Y      K+   N       AI+ G I
Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209


>gi|307730304|ref|YP_003907528.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307584839|gb|ADN58237.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 292

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 20/228 (8%)

Query: 7   TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66
             ++   L+ L  +++ +    +A+      +   L       L+ +  ++         
Sbjct: 9   DAERRDGLKALLRQINRLARFNEAQ--DWRQVERGLKRQWPDLLVIDWQDWMS--VADVR 64

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
            L+  Y D  +      + P +   + +E V     + +       +  A     +   +
Sbjct: 65  HLLSHYPDLRIAVLTDRISPEVVGELMDEGVRGVVARETDPCL---IVRAFEMVLLGGHY 121

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
             +G +        L  +          +   D      +R+  +  L+ R+   ++   
Sbjct: 122 VPSGALPL---NPPLPADT-------AIRPFDDKNPP-PRRARLSNGLSPRQEQIMRCVH 170

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T++ IA  LG+S  TV  +L S   +L A NR  A+  A+  G++
Sbjct: 171 MGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|269964012|ref|ZP_06178318.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831231|gb|EEZ85384.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 222

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
                  T     + +  +        +++  F          +  LT+RE   L     
Sbjct: 111 DAPIEHLTRCIDAVLSGELWLPRKLMAKMLIHFRPYAISSQEISNTLTKREKQILDRIVQ 170

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G ++ EIA+ L ++  TV  ++     KL+   R +AI K
Sbjct: 171 GQSNLEIADALFVAESTVKTHVYKLYKKLNVSCRKEAIQK 210


>gi|238895472|ref|YP_002920207.1| response regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|238547789|dbj|BAH64140.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 218

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           A+     A     Q+    +E  K  S  A +L+ERE   + +   G    EI+E+L LS
Sbjct: 119 ASGQRYIASDIAQQMALSQIEPDKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLS 177

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             TVN+Y      KL+    ++    AIR G 
Sbjct: 178 PKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|256831896|ref|YP_003160623.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256685427|gb|ACV08320.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 218

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 19/147 (12%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAH------------ 150
           R          +A  V         VI           +A + + +A             
Sbjct: 72  RCHALNGDTKFLALSVSDAAEDVVAVIRAGARGYVTKNIAPDELADAMVRVRDGDAVFSP 131

Query: 151 GACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                V+  F       ++       L+ RE   ++L   GY   E+A +L +SV TV +
Sbjct: 132 RLAGFVLDAFGTQHADIATTDDELDRLSAREQEVMRLIARGYAYREVASELFISVKTVES 191

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   KL   +R +    A     +
Sbjct: 192 HVSAVLRKLQLSSRHELTRWAAARRLL 218


>gi|269955518|ref|YP_003325307.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304199|gb|ACZ29749.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 226

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GY+  E+A +L +S+ TV  ++ +   KL   +R +    A   
Sbjct: 164 DRLSRREQEVMRLIARGYSYREVASELFISIKTVETHVSAVLRKLQLSSRYELTRWAAAR 223

Query: 232 GYI 234
             +
Sbjct: 224 HIL 226


>gi|170701000|ref|ZP_02891981.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|170134097|gb|EDT02444.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
          Length = 214

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASDIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|146309694|ref|YP_001174768.1| DNA-binding transcriptional activator UhpA [Enterobacter sp. 638]
 gi|145316570|gb|ABP58717.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 197

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAA 171
           + I   V          +       L+     + +I A          +L        AA
Sbjct: 74  STIMLSVHDSPALVEQALNAGARGFLSKRCSPDELISAVRTV-AAGGCYLTPEIAIKLAA 132

Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                LT+RE    +    G   +EIA +LGLS  TV+ +  +   KLD  N ++   +
Sbjct: 133 GRQDPLTKRERQVAEKLAQGMAVKEIAVELGLSPKTVHVHRANLMEKLDVSNDVELARR 191


>gi|52842852|ref|YP_096651.1| response regulator GacA [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629963|gb|AAU28704.1| response regulator GacA [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 225

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L + + S    L+ERE   + +   G   ++IA++L LS  T+N Y      KL 
Sbjct: 139 MAINSLQESQDSPFDLLSEREMQVMLMITSGMNVQDIADRLFLSSKTINGYRYRMFEKLG 198

Query: 218 AVNRIQAIAKAIRFGYI 234
             N ++    A++   I
Sbjct: 199 IKNDVELTYLAMKHRII 215


>gi|332705230|ref|ZP_08425311.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332355973|gb|EGJ35432.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 164

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           A  LTERE   + L   G +++ IA++L +S  TV+A+L    +KLD  +R   +
Sbjct: 95  ASLLTERELQIVTLVASGQSNKLIAKQLEISEWTVSAHLRRIFLKLDVDSRAAMV 149


>gi|332531975|ref|ZP_08407859.1| Two-component system regulatory protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038602|gb|EGI75045.1| Two-component system regulatory protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 204

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL       A  LT++E   L+LA DG  + +IA++L +S  T   YL  A  KL+A NR
Sbjct: 132 ELAINALDDADPLTDKERKALKLASDGLKTSDIAKQLFISEGTTRNYLSDAIAKLNATNR 191

Query: 222 IQAIAKAIRFGYI 234
           I A   A + G++
Sbjct: 192 IDAARIAKQKGWL 204


>gi|308447116|ref|XP_003087338.1| hypothetical protein CRE_08625 [Caenorhabditis remanei]
 gi|308257188|gb|EFP01141.1| hypothetical protein CRE_08625 [Caenorhabditis remanei]
          Length = 217

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                      +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 136 FDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 195

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 196 GVQNRTQAV 204


>gi|253564051|ref|ZP_04841508.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|251947827|gb|EES88109.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|301161648|emb|CBW21188.1| putative LuxR family transcriptional regulator [Bacteroides
           fragilis 638R]
          Length = 199

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEK 197
              +++ +          D   +     +       L+ RE   L L   G  ++EIA+K
Sbjct: 98  AEEQLVKDILKLHQHAHHDGYPIKDMPPTPPTTGHELSAREIEVLVLITKGLINKEIADK 157

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L + + TV  +  + T KL   +       A+  GY+
Sbjct: 158 LNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMNGYV 194


>gi|161503514|ref|YP_001570626.1| hypothetical protein SARI_01590 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864861|gb|ABX21484.1| hypothetical protein SARI_01590 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 212

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              + I   L      +   + LT RE   L+L  +GYT+  I+EKL +S+ TV  +  +
Sbjct: 131 LNREAIMAELNAD---APNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMN 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL      + +  A R   I
Sbjct: 188 MMRKLQVHKVTELLNCARRMRLI 210


>gi|149909623|ref|ZP_01898276.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36]
 gi|149807327|gb|EDM67280.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 14/134 (10%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEA--------HGACYQ 155
           L    L    +   V         +I              ++++E               
Sbjct: 73  LRAEELSSRVVILTVSDNKQDVIKLINAGADGYLLKDSEPDLLLEQLHDVLSGQQALSES 132

Query: 156 VITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           ++     L +  +   +   LT+RE   L     GY+++ +A  L +S  TV  ++ S  
Sbjct: 133 LVGYLDCLHEDNNFEEKLAKLTKRENQILLEISKGYSNKHVASNLHISEGTVKVHVKSLL 192

Query: 214 VKLDAVNRIQAIAK 227
            KL+A +R++A   
Sbjct: 193 KKLEASSRVEAAVM 206


>gi|329927293|ref|ZP_08281574.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
 gi|328938596|gb|EGG34980.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
          Length = 865

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 34/70 (48%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L          LT +ET  L L   G T++ IA++LGL+V TV  YL     KL 
Sbjct: 785 EKLASLDLLDHFGTYGLTPQETQVLALLRRGDTNQSIADELGLTVGTVKVYLNRIYSKLG 844

Query: 218 AVNRIQAIAK 227
             +R+QA+ K
Sbjct: 845 VSSRVQAVLK 854


>gi|324997312|ref|ZP_08118424.1| response regulator receiver protein [Pseudonocardia sp. P1]
          Length = 213

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 39/80 (48%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++    E    R+  A  L+ RE   ++    G T+ EIA  L +S+ TV  +L +   
Sbjct: 133 RLLEQLTEPPPPRAEPAVALSARELDVVRAVARGRTNHEIAGDLFVSLSTVKTHLTNIGS 192

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KLDA NR++  A A     +
Sbjct: 193 KLDARNRVEIAAWAWENRLV 212


>gi|315180871|gb|ADT87785.1| response repressor in two-component regulatory system with UhpB
           [Vibrio furnissii NCTC 11218]
          Length = 202

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQL 184
              GY+        L   V   A+G CY      L L   + +A  A  LT+RE    ++
Sbjct: 94  GARGYLSKRCSPEELVQAVRTSANGGCYLTPDIALRLATPKKAAVQADQLTKREKEVCRM 153

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             +G   + +A +LGLS  TV+ +  +A  KL   N ++    
Sbjct: 154 LAEGLDVKTVAAQLGLSYKTVHVHRANAMDKLGVKNNVELAKL 196


>gi|298248552|ref|ZP_06972357.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551211|gb|EFH85077.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 226

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEE 193
              A   ++       +V+             A +     LTERE   L     G  ++E
Sbjct: 119 ERAARGEMLVQPETIRRVLDYAARRSASALLPAGSIHEVQLTEREQEVLSALAAGERNKE 178

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           I  +LG++  TV +YL S   KL+  +R  A+  AI  G +
Sbjct: 179 IGARLGITRRTVESYLNSLYAKLNVDSRAAAVMVAIERGLL 219


>gi|291557697|emb|CBL34814.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium siraeum V10Sc8a]
          Length = 207

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAK 227
           LTERE   ++L  DG ++ EIAEKL LS  TV  Y+     K    +R Q A+  
Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQIAVRY 202


>gi|291530798|emb|CBK96383.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium siraeum 70/3]
          Length = 207

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAK 227
           LTERE   ++L  DG ++ EIAEKL LS  TV  Y+     K    +R Q A+  
Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQIAVRY 202


>gi|217969732|ref|YP_002354966.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507059|gb|ACK54070.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 226

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 40/84 (47%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                ++ + L    +   AA  LT R+T  L+L G G  ++EIA +L LSV TV A+  
Sbjct: 130 AVSRHLVGNMLARPPEDERAASVLTPRQTEILELIGSGLGTKEIARRLDLSVKTVEAHRA 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               +L   +    + +A R G I
Sbjct: 190 QIMERLGVRDIANLLLEAARRGLI 213


>gi|225018320|ref|ZP_03707512.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum
           DSM 5476]
 gi|224948920|gb|EEG30129.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum
           DSM 5476]
          Length = 206

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT RE   + L  +G +++EIAE+L LS  TV  ++     K    +R Q   
Sbjct: 148 LTPREMEVVALIAEGLSNKEIAERLFLSNGTVRNHISVILEKTGLEHRTQIAV 200


>gi|167749619|ref|ZP_02421746.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702]
 gi|167657372|gb|EDS01502.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702]
          Length = 207

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAK 227
           LTERE   ++L  DG ++ EIAEKL LS  TV  Y+     K    +R Q A+  
Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQIAVRY 202


>gi|111021259|ref|YP_704231.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820789|gb|ABG96073.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 881

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 157 ITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             + L     RS  +A+  LT RE   L       T+E+IA  L +SV+TV  +L     
Sbjct: 802 FAERLRASFPRSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYR 861

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +R  AIA A   G +
Sbjct: 862 KLGVTSRRDAIAAAQHNGLL 881


>gi|54295484|ref|YP_127899.1| transmission activator LetA [Legionella pneumophila str. Lens]
 gi|22074635|gb|AAL79360.1| GacA regulatory protein [Legionella pneumophila]
 gi|53755316|emb|CAH16812.1| Legionella transmission activator LetA [Legionella pneumophila str.
           Lens]
 gi|307611522|emb|CBX01199.1| Legionella transmission activator LetA [Legionella pneumophila
           130b]
          Length = 219

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L + + S    L+ERE   + +   G   ++IA++L LS  T+N Y      KL 
Sbjct: 133 MAINSLQESQDSPFDLLSEREMQVMLMITSGMNVQDIADRLFLSSKTINGYRYRMFEKLG 192

Query: 218 AVNRIQAIAKAIRFGYI 234
             N ++    A++   I
Sbjct: 193 IKNDVELTYLAMKHRII 209


>gi|330501190|ref|YP_004378059.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           NK-01]
 gi|328915476|gb|AEB56307.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           NK-01]
          Length = 476

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSE 192
           +  ++L             Q +       +   ++      L+ERET  LQ    G +++
Sbjct: 375 AARVLLDEAEQGRFDSRACQAVISAAHGEQAPLASKPGNGLLSERETQILQRISSGASNK 434

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E+A  LG+S  TV  ++ S   KL    R  A  KA+  G I
Sbjct: 435 EVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGVI 476


>gi|328913171|gb|AEB64767.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 214

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +L  +++++       +     +      S    LT RE   LQ    G T++EIA+ L 
Sbjct: 120 VLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALH 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LS  ++   L S   KL+  +R +A+  A
Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIA 208


>gi|328554812|gb|AEB25304.1| ComA [Bacillus amyloliquefaciens TA208]
          Length = 214

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +L  +++++       +     +      S    LT RE   LQ    G T++EIA+ L 
Sbjct: 120 VLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALH 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LS  ++   L S   KL+  +R +A+  A
Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIA 208


>gi|319785654|ref|YP_004145129.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464166|gb|ADV25898.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 214

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F    +       RE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 139 RARYRFHDDRAPGEGFNPREVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGT 198

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 199 RDRTRAVLKAITLRII 214


>gi|315181312|gb|ADT88226.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC
           11218]
          Length = 216

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 143 NEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            E+I   +     V +  L           + A   LT RE   L+    G ++ ++AE 
Sbjct: 120 AEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRELQILRSLQTGASNMQMAES 179

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L +S  TV ++L     KL   NR QAI  A
Sbjct: 180 LFISEFTVKSHLYQIFKKLSVKNRTQAITWA 210


>gi|308174858|ref|YP_003921563.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607722|emb|CBI44093.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
          Length = 214

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +L  +++++       +     +      S    LT RE   LQ    G T++EIA+ L 
Sbjct: 120 VLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALH 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LS  ++   L S   KL+  +R +A+  A
Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIA 208


>gi|217970367|ref|YP_002355601.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507694|gb|ACK54705.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 220

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 36/85 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                   + D L       +AA  LT RE   LQL  +G TS +I ++L ++  TV  +
Sbjct: 126 LCPEVAATVADALRDSPGVYAAAPRLTARERQVLQLIAEGLTSVQIGDRLHIAASTVEVH 185

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
             +   KLD  N  +    AI  G 
Sbjct: 186 RRNLMRKLDLHNVAELTRYAIHSGI 210


>gi|163735511|ref|ZP_02142943.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           litoralis Och 149]
 gi|161391131|gb|EDQ15468.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           litoralis Och 149]
          Length = 221

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 42/76 (55%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A  +++  FL++ + +S     L+ +E + L     G T+ E+A++L +S +TV  +L +
Sbjct: 128 AAGKMVFPFLDVRELQSDPIHLLSRKERATLDALSKGLTNRELAKELSISTNTVKFHLTN 187

Query: 212 ATVKLDAVNRIQAIAK 227
              KL   NR QAIA 
Sbjct: 188 LYEKLSVKNRAQAIAF 203


>gi|153834045|ref|ZP_01986712.1| transcriptional regulator, LuxR family protein [Vibrio harveyi
           HY01]
 gi|148869600|gb|EDL68590.1| transcriptional regulator, LuxR family protein [Vibrio harveyi
           HY01]
          Length = 211

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSE 192
             ++   +        + I  + E  +  + AA        LT+RE+   +L   G ++ 
Sbjct: 112 SAVSQGDVWFPRPILNKAIYHYQEGGEDPTLAADYLSTKFLLTKRESEICKLMLQGLSNT 171

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +IA +  +S++T+  +  +   KL+  +R + +A A +
Sbjct: 172 QIARQSNVSINTIKTHASNVLHKLNVHSRYELLAMAKK 209


>gi|90425279|ref|YP_533649.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisB18]
 gi|90107293|gb|ABD89330.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 209

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 134 FTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           F    ++   E  IEA        ++     L          LT RE   L+L   G T+
Sbjct: 109 FRGPEIVTRVEEAIEAFTRRRAAGLVPKVPSLNF---PGREPLTMREREVLELFSSGNTN 165

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +E   +LG+S  T+  +  +   KL A N    +  
Sbjct: 166 KEAGRQLGISPRTIEYHRANIMKKLGAKNATDLVRI 201


>gi|325971781|ref|YP_004247972.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027019|gb|ADY13778.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy]
          Length = 295

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           TERE + +QL   G T++EIA +LG+S +TVN ++ +   K    +RI  
Sbjct: 238 TEREFAVIQLISKGLTNKEIASQLGISANTVNNHVANIYGKTQVRSRIDL 287


>gi|323977906|gb|EGB72992.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 218

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|283457639|ref|YP_003362223.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133638|dbj|BAI64403.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Rothia mucilaginosa DY-18]
          Length = 235

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 6/117 (5%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTER 177
           R G+ +       S F++        A     +V      +    ++      A  LTER
Sbjct: 120 RPGYVRRALEAGASGFVVKDTGARQLAEAI-RRVHAGLRVVDPSLAADSLVTGASPLTER 178

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+ A  G T+++IA  L LS  TV  YL +A  K  A  R  A+  A   G++
Sbjct: 179 EAQVLREAASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIATENGWL 235


>gi|288934571|ref|YP_003438630.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889280|gb|ADC57598.1| two component transcriptional regulator, LuxR family [Klebsiella
           variicola At-22]
          Length = 218

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           A+     A     Q+    +E  K  S  A +L+ERE   + +   G    EI+E+L LS
Sbjct: 119 ASGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLS 177

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             TVN+Y      KL+    ++    AIR G 
Sbjct: 178 PKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|253987957|ref|YP_003039313.1| monoamine regulon transcriptional regulator MoaR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779407|emb|CAQ82568.1| similar to monoamine regulon transcriptional regulator moar
           [Photorhabdus asymbiotica]
          Length = 219

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 160 FLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            +EL  +         LT +E   + L   G +++ IA+ L +S+ TV  +L +  +K  
Sbjct: 143 LIELATRDLLPETPTILTAKEQEIINLVRAGSSNKRIAQVLNISLSTVKTHLRNIFIKTK 202

Query: 218 AVNRIQAI 225
             NR + +
Sbjct: 203 VTNRTELV 210


>gi|239982332|ref|ZP_04704856.1| chitinase two-component response regulator [Streptomyces albus
           J1074]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 41/145 (28%), Gaps = 4/145 (2%)

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148
           W  +   T  +    +   L  G    AG              V   +    L    +  
Sbjct: 75  WADVLVLTTFDLDEYVFGALRAGA---AGFLLKNTDAPGLLAAVRTVAAGEGLIAPAVTR 131

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                                    LT RE   L   G+G ++  IAE+L ++  T   +
Sbjct: 132 -RLIAAFATGRAPRPAGAEPPELAALTRREREVLGCLGEGLSNARIAERLEMAEATAKTH 190

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           +     KL   +R QA   A   G 
Sbjct: 191 VSRVLGKLGLRSRAQAALLAQELGI 215


>gi|255039276|ref|YP_003089897.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254952032|gb|ACT96732.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 212

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLT RE   +     GYT+E+I+  L LS  TV  +  +   KL   N  + I  AI+ G
Sbjct: 152 NLTFREIEIIGFIKKGYTNEQISAALNLSFFTVKTHRKNIHFKLGINNVAELIEFAIQNG 211

Query: 233 Y 233
            
Sbjct: 212 I 212


>gi|157850161|gb|ABV89906.1| acyl-homoserine lactone receptor [Burkholderia vietnamiensis]
          Length = 146

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 39/151 (25%), Gaps = 13/151 (8%)

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
                        D  +         I+W  +                        G+A 
Sbjct: 2   WXGRYQARNYIEIDSTVREGALSTNMIVWPDVDRIDPC-----PLWEDARDFGLAVGVAQ 56

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN 173
                    G +  +     L    I              + +++ F+ L K   +A   
Sbjct: 57  SSWAARGAFGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-LPKLSPAAGVT 115

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           LT RE        +G T+ EI + L +S  T
Sbjct: 116 LTAREREVPCWTAEGKTACEIGQILSISERT 146


>gi|43289|emb|CAA27328.1| unnamed protein product [Escherichia coli]
          Length = 211

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 134 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 193

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 194 THLAIRHGL 202


>gi|33865914|ref|NP_897473.1| DNA-binding response regulator [Synechococcus sp. WH 8102]
 gi|33633084|emb|CAE07895.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102]
          Length = 228

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 37/97 (38%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 E  + A    +   +  L   +    +   LT RE   L     G +  +IAE 
Sbjct: 130 EDRKPLEAAVLAVMGHHSYRSPSLRSDELPYLSCPRLTPREYEVLDRLARGMSDRDIAED 189

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L ++  T   Y       L+  NR+QA+ K +R G +
Sbjct: 190 LVVTEETARTYTKRLLRTLEVNNRVQAVLKGMRCGMV 226


>gi|83747869|ref|ZP_00944902.1| PrhJ [Ralstonia solanacearum UW551]
 gi|207739207|ref|YP_002257600.1| transcription regulator prhj protein [Ralstonia solanacearum
           IPO1609]
 gi|83725516|gb|EAP72661.1| PrhJ [Ralstonia solanacearum UW551]
 gi|206592580|emb|CAQ59486.1| transcription regulator prhj protein [Ralstonia solanacearum
           IPO1609]
          Length = 175

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +    + + +   L  E      G   +      E      +    LT R+   L+ A  
Sbjct: 62  EAAGELPSGQLQPLTLEQTYAMLGRILEARRHGCEPRPGTGARLSALTPRQHDILREAAH 121

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G ++ EIA+ L +SV TV +++    ++L A NR +  A 
Sbjct: 122 GKSNVEIAQTLHISVETVKSHVRQILMRLQARNRTELAAI 161


>gi|330836949|ref|YP_004411590.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
 gi|329748852|gb|AEC02208.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
          Length = 299

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           TERE S ++L  +G T++EIA +L +S +TVN ++ +   K +  +RI  
Sbjct: 240 TEREFSVIKLIANGRTNKEIAMELNISTNTVNNHVANIFSKTEVRSRIDL 289


>gi|299133992|ref|ZP_07027185.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
 gi|298590739|gb|EFI50941.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
          Length = 262

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    L+ RE   L+   +G +++ IA K+ +S  TV  ++ S   K+   +R QA    
Sbjct: 167 APIPQLSLREKVVLRCIIEGGSNKMIARKIAISEATVKVHVKSILRKIRVHSRTQAAIWG 226

Query: 229 IRFGY-IC 235
           +  G+ +C
Sbjct: 227 MNSGFSLC 234


>gi|157146847|ref|YP_001454166.1| transcriptional regulator FimZ [Citrobacter koseri ATCC BAA-895]
 gi|157084052|gb|ABV13730.1| hypothetical protein CKO_02622 [Citrobacter koseri ATCC BAA-895]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE + L+   +G +++EIAE+L LS  T++A+  +   KL     ++ I  A    
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIFSKLGLHTIVELIDYAKVHD 208

Query: 233 YI 234
            +
Sbjct: 209 LL 210


>gi|117624057|ref|YP_852970.1| response regulator [Escherichia coli APEC O1]
 gi|115513181|gb|ABJ01256.1| response regulator [Escherichia coli APEC O1]
          Length = 206

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 129 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 188

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 189 THLAIRHGL 197


>gi|94497938|ref|ZP_01304503.1| probable two-component response regulator [Sphingomonas sp. SKA58]
 gi|94422666|gb|EAT07702.1| probable two-component response regulator [Sphingomonas sp. SKA58]
          Length = 260

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 37/70 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                    +LT ++ + L     G  +++IA  LG+S+ T+ A++ +   KL  ++R Q
Sbjct: 188 EDDIVRRIDSLTPQQKTVLGHLVRGRLNKQIAHDLGVSMTTIKAHVSAILQKLGVLSRTQ 247

Query: 224 AIAKAIRFGY 233
           A+ KA R G+
Sbjct: 248 AVIKANRVGF 257


>gi|74318255|ref|YP_315995.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057750|gb|AAZ98190.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 211

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++R      L++RE         G +  +IA +L LSV T++ Y    T KL+  +  + 
Sbjct: 140 ERRGVLHEALSDRELQVFLRLARGESVSDIASQLHLSVKTISTYRSRVTEKLNVASNAEL 199

Query: 225 IAKAIRFGYI 234
              A+R G I
Sbjct: 200 ATYALRHGLI 209


>gi|15613144|ref|NP_241447.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173195|dbj|BAB04300.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 201

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L+L   G T+E+IA  L L+  TV  Y+ +A  KL+  NR QAI KA   G
Sbjct: 140 PLTEREQEVLRLTKGGKTTEQIATVLYLTNGTVRNYISTAIQKLEVENRHQAIQKAEEKG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|319440533|ref|ZP_07989689.1| putative transcription regulator [Corynebacterium variabile DSM
           44702]
          Length = 146

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               S    +LT RE   ++L   GYT  E+A++L +SV TV  ++     K    NR Q
Sbjct: 76  EDAGSPLIDDLTPREVEVMRLLARGYTYREMAKRLFISVKTVETHVSHVLRKTQQTNRHQ 135

Query: 224 A 224
            
Sbjct: 136 L 136


>gi|303257286|ref|ZP_07343300.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium
           1_1_47]
 gi|302860777|gb|EFL83854.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium
           1_1_47]
          Length = 218

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +  R+LT RE    +LA DG T++EI+  L +++ TV  + G+A  KL+  + ++A+   
Sbjct: 148 ARYRSLTPREKEIFKLAADGKTNKEISSLLNIALPTVKMHRGNAFDKLNVHSSVEALKLY 207

Query: 229 IRFGY 233
              G 
Sbjct: 208 DSLGL 212


>gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 318

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 29/57 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            LT RE+  L   G G T+ +IA+ LG+S  TVN +L    VKL    R  A   A 
Sbjct: 258 RLTPRESDVLLWLGKGKTNRDIADILGMSPRTVNKHLEHIFVKLGVETRSAAAVLAR 314


>gi|239983037|ref|ZP_04705561.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291454869|ref|ZP_06594259.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357818|gb|EFE84720.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 220

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183
                  + T     +       A                  S     R L+ RE   L+
Sbjct: 109 AGGVKGYVVTGTRTNIGLPTRPGAAPIGSAAARMHRRPPGAPSHPGGYRELSGREVEVLR 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G +++ I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|284041267|ref|YP_003391197.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283820560|gb|ADB42398.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 213

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 24/153 (15%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEFLMLANEVI------- 146
           +L+++L             V               +GYV+ ++E   L   +        
Sbjct: 64  ELTIQLRQRFPQVKICLLTVADQPEAIKEAIRAGADGYVLKSAERSELETALRTISKGNK 123

Query: 147 -----IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
                +    A    I    +L K        +++RE   L+L    ++  +IAEKL +S
Sbjct: 124 FYSEQVMLQLANEVGIEVIPDLDK---PQKITISKRELDVLKLIAQEFSGTQIAEKLFIS 180

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  +      KL     I  +  AI+F  +
Sbjct: 181 PTTVETHRKHLMQKLGVQTTIGLVKYAIKFNLV 213


>gi|256824492|ref|YP_003148452.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687885|gb|ACV05687.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 228

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 39/128 (30%), Gaps = 3/128 (2%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKK 166
           +        G              V   +     L+                   +L  +
Sbjct: 100 VRALGAGADGFLLKAEDPRQIIDAVRSAAAGHSPLSPTSARSLVRLVGP--GSRADLASR 157

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               A  LTERE     L G+G T+ +IA +L +S  TV   L     K    NR Q   
Sbjct: 158 ARELAAGLTERERQVAALVGEGLTTPQIAARLFVSEATVKTQLAEVQRKWGCENRTQVAV 217

Query: 227 KAIRFGYI 234
            A R G I
Sbjct: 218 WADRAGLI 225


>gi|284989376|ref|YP_003407930.1| LuxR family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284062621|gb|ADB73559.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus
           DSM 43160]
          Length = 983

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 68/251 (27%), Gaps = 35/251 (13%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN---ILIE 70
           ++ +   +  ++        A+  + +    P            D  +          + 
Sbjct: 733 VERVRAAVRHVRTYWDVDRLAVLRLVATALAPVGDAAAAARSQGDEAAVRRWTGVGEELV 792

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
                 +      + P   ++   +  +E+            L  A +       F    
Sbjct: 793 AQARAAVEDRVRDVGPFGVEAAAWQARVEAEAARLAGRAAPELWRAAV-----DAFGYGH 847

Query: 131 YVIFTSEFLMLANEVIIEAHGA-----------------------CYQVITDFLELF--- 164
                     LA  ++     A                           +     L    
Sbjct: 848 VYEQARSRWRLAEALLAAGDRAAAAEELRAAAEVAARLGATPLRSAVTALARRGRLDLPG 907

Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +  +AA   T RE   L+L   G T+ +I  +L +S  T + ++     KL A  R +
Sbjct: 908 VGRVPAAAAVFTPREAEVLRLLAQGRTNRQIGAELYMSEKTASVHVSRILAKLGAGGRTE 967

Query: 224 AIAKAIRFGYI 234
           A+A A   G +
Sbjct: 968 AVALAAARGLL 978


>gi|183982964|ref|YP_001851255.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183176290|gb|ACC41400.1| transcriptional regulatory protein [Mycobacterium marinum M]
          Length = 1078

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 13/194 (6%)

Query: 47   RQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV 106
             +  +         +       +    D         +L  +  ++  +   +       
Sbjct: 888  TRARVAMAEGEPEQAERAAYEALTCAADVGARTCLPDILECL-GALAADQGRDREAARVY 946

Query: 107  RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-- 164
                G+    G    +R   +  GY    +      +    +   A     +    +   
Sbjct: 947  GAAEGIRQRIGA---MRFKIYDAGYQKSVAALHATMSTDEFDTAWAHGAAFSAEEAIDYL 1003

Query: 165  -------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                   K+ +S    LT  E + ++L G G ++++IA++L LS  TV  +L     KL 
Sbjct: 1004 QHRRGERKRATSGWAALTRAELNVVRLVGQGLSNKDIAQRLFLSPRTVQTHLTHVYTKLG 1063

Query: 218  AVNRIQAIAKAIRF 231
              +R+Q   +A + 
Sbjct: 1064 FNSRVQLAQQAAQH 1077


>gi|113969929|ref|YP_733722.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|113884613|gb|ABI38665.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 220

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K +S   +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA
Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 225 IA 226
           + 
Sbjct: 206 VI 207


>gi|67923468|ref|ZP_00516945.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
 gi|67854703|gb|EAM49985.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
          Length = 94

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 156 VITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           +    L L +           LT  ET  +QL   G ++ E+AEKL +S  T+ +++ + 
Sbjct: 13  LHKANLSLDEGSRIHVPNHVELTPTETKVVQLVAKGLSNREVAEKLSVSRRTIESHVSNM 72

Query: 213 TVKLDAVNRIQAIAKAIRF 231
             K    NR +    A+  
Sbjct: 73  LNKTSLKNRTELARWAMEN 91


>gi|326801202|ref|YP_004319021.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551966|gb|ADZ80351.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 216

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN-------LT 175
                Y+I       L   +   A      C ++    L    K   ++ +       + 
Sbjct: 97  AGATAYLIKNVSRDELLFAIRFAAQGEPYICAEISFKLLRQAMKVVPSSASANATDLQIN 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            RE   L L  DG+T++EIAE+L  S  TV  Y  S   K    N    I  A + G +
Sbjct: 157 NREMEVLALTADGFTNQEIAERLFTSKRTVEGYRQSLIEKTGVRNTAALIKYAYQNGIL 215


>gi|255039459|ref|YP_003090080.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254952215|gb|ACT96915.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 212

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L+    G+T +EIA +L LS HTV  Y  S   KL        I  A++ G 
Sbjct: 147 LSPREKQVLRKVCSGHTIKEIAYELKLSTHTVQYYHRSVMDKLKVRRTTDLIVYAMQHGL 206


>gi|297191473|ref|ZP_06908871.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722089|gb|EDY65997.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 326

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 16/226 (7%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +   ++ ++  RL  +       + A +      D    +  +      +  +       
Sbjct: 117 ELLDNVDDIRIRLEALAESCTRESLAFH-----PDNTLTEGSVEAGRPLNERALARGVRF 171

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
              Y D       +  +         E   E     ++ +   ++  +        G  +
Sbjct: 172 RSIYLDSV----ANDRVTKAHAQWMAERQSEIRTSPTLPMRLLIVDTSAAIVAGLPGQAQ 227

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              ++F+S  ++LA   + EA+      +           S A  LT +E   LQL   G
Sbjct: 228 PSALLFSSPPVVLAMRALFEAYWEHASPMDA-------PVSRAGGLTPQERKLLQLLATG 280

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T E +A  LG+ V T    +     +L A +R +A  +A R  +I
Sbjct: 281 LTDEAVARALGIGVRTERRIVAELMERLGASSRFEAGVQATRREWI 326


>gi|170743785|ref|YP_001772440.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168198059|gb|ACA20006.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 220

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 15/162 (9%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII 147
               I       +  +L+ RL         +A  V         ++       L      
Sbjct: 51  DVAIIDMSLPDLNGLELARRLAERCPQVKLLALTVHESRAYVQPMLQAGARGYLLKRSAA 110

Query: 148 EAHGACYQVITDF---------------LELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +      + +                      +       +L+ RET  L+    G++++
Sbjct: 111 DELLRAIRAVAAGGLYLDPAVADKALPGAPAARSAEPGGADLSPRETEVLRHTAQGFSNK 170

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA +L +SV TV  Y   A  KL    R   +      G++
Sbjct: 171 EIALRLDVSVKTVETYKARAAEKLHLRTRADIVRFGAARGWL 212


>gi|325923449|ref|ZP_08185108.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546071|gb|EGD17266.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 194

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 156 VITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           V++      ++ +  +       LT RE     L   G +++EIA  L + + TV  ++ 
Sbjct: 110 VLSHERPPNRRATPPSPQPTMYRLTPREREVADLLSRGLSNKEIARDLRIELATVKNHVH 169

Query: 211 SATVKLDAVNRIQAIA 226
           S   K DA  R+QA+ 
Sbjct: 170 SVLRKTDARTRLQAVV 185


>gi|325926758|ref|ZP_08188066.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542839|gb|EGD14294.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F+ + +      ERE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 135 RARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGT 194

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 195 RDRTRAVLKAITLRVI 210


>gi|325523797|gb|EGD02039.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 263

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 68/241 (28%), Gaps = 27/241 (11%)

Query: 8   GKKSSSLQE---LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
           G+   SL +       + LI+  +   ++    +      PR                  
Sbjct: 15  GRLIESLDQPGFWLSLVRLIEEYVAVDSWV--ALMFGDGRPRVFAECPYEGGGPDPLFRD 72

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
               +    D F           +++            +         +    + + V L
Sbjct: 73  YVQGLYLL-DPFYIANRDAPKSGLFRLSDVAPECFRDTEYYTLYFTHNVVEDEVQYNVVL 131

Query: 125 GFHKNGYVIFTSEFL--MLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------- 173
              +   +   S+      A  ++         ++   L   +    AA           
Sbjct: 132 DDVRTLCLSLGSKRRFGPEAVALLDLMRPWVAALMRQRLAFERAPDEAAPPKRPGGPDRF 191

Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     LT RE   ++L   G +++E+A KL +S  TV  +  +   KLD  ++ +
Sbjct: 192 EQAMARLGTPLTARELDVIRLILSGRSNKEVANKLAISAETVKVHRRNIYGKLDINSQSE 251

Query: 224 A 224
            
Sbjct: 252 L 252


>gi|315645417|ref|ZP_07898541.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Paenibacillus vortex V453]
 gi|315278895|gb|EFU42205.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Paenibacillus vortex V453]
          Length = 873

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 14/156 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           ++ +          +R    L    G      L    + Y +        A E  ++   
Sbjct: 717 LEYQRGQRKQSLQLLREALRLGAQNGY-VRTFLDEGADMYQLLMRYTSHPAQEEDVDMGL 775

Query: 152 ACYQVITDFL-------------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
                    L              +   +S+    L   E + L+L   G  ++++A  L
Sbjct: 776 IQTHHYARMLMERFPNHVKADPPHITSSQSALPEQLNRNEKNLLRLIMQGAANKQMAAAL 835

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           GLS  T+  YL     KL   +R QA+ +A     +
Sbjct: 836 GLSEGTIRVYLSRLYDKLGVTSRTQALVRAQSLNLL 871


>gi|316932396|ref|YP_004107378.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315600110|gb|ADU42645.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 225

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT ++   L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|262280464|ref|ZP_06058248.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258242|gb|EEY76976.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 216

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +          +   ++LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL
Sbjct: 135 LDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKL 194

Query: 217 DAVNRIQAI 225
              NR QA+
Sbjct: 195 GVQNRTQAV 203


>gi|196230226|ref|ZP_03129089.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225823|gb|EDY20330.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 211

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               QV+  F E   + +  + +L+ RE   L+L   GY  +EIA++L + + TV  ++ 
Sbjct: 129 HIARQVVQHFHE-EGRLARESHHLSPREAEVLELLAAGYIYKEIADRLQIGLETVRTHVK 187

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K+   +R++A+A+
Sbjct: 188 NICAKMHVRSRVEAVAR 204


>gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 245

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----------NLTERETSCLQLAGD 187
              +   ++    A  + +     L     S               LT RE   L+   +
Sbjct: 137 RAASPSEVVARELASIRALLSERTLPPTIPSQPPTPTPLPPPIKVELTPREQQVLEKVAE 196

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G  ++EIA++L  SV  V  Y+     K    +R + +  A+ +G I
Sbjct: 197 GLMNKEIAKQLQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 243


>gi|302558693|ref|ZP_07311035.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
 gi|302476311|gb|EFL39404.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
          Length = 268

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 166 KRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            R +A       L+ RE   + L   G T+++IA    +S  TV  ++     KL + +R
Sbjct: 190 GRPAAPDRSGYQLSTREAEIMDLIASGMTNQQIAATCFISEKTVKNHINRIFAKLHSTSR 249

Query: 222 IQAIAK 227
            +A AK
Sbjct: 250 SEAAAK 255


>gi|298251564|ref|ZP_06975367.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546156|gb|EFH80024.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1171

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 41/79 (51%)

Query: 156  VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
             ++   +     S    +LT+RE   L+L   G +++EIA+ L + + TV  ++ +   K
Sbjct: 1093 ALSSAQQASAVFSVPGASLTQREQEVLRLLATGASNQEIAQTLVIELPTVKKHVSNLLGK 1152

Query: 216  LDAVNRIQAIAKAIRFGYI 234
            L A +R QAI++A     +
Sbjct: 1153 LRASSRTQAISRARALSLL 1171


>gi|291454177|ref|ZP_06593567.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357126|gb|EFE84028.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 214

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 41/145 (28%), Gaps = 4/145 (2%)

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148
           W  +   T  +    +   L  G    AG              V   +    L    +  
Sbjct: 74  WADVLVLTTFDLDEYVFGALRAGA---AGFLLKNTDAPGLLAAVRTVAAGEGLIAPAVTR 130

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                                    LT RE   L   G+G ++  IAE+L ++  T   +
Sbjct: 131 -RLIAAFATGRAPRPAGAEPPELAALTRREREVLGCLGEGLSNARIAERLEMAEATAKTH 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           +     KL   +R QA   A   G 
Sbjct: 190 VSRVLGKLGLRSRAQAALLAQELGI 214


>gi|171058278|ref|YP_001790627.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775723|gb|ACB33862.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 209

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETS 180
               GYV   S+   +     + A G  Y        L +  ++ +       L++RE  
Sbjct: 96  AGAYGYVNKGSDPAQIVAAARMVAQGRKYITAEMAQMLVENLTTPSSEAAHDKLSDRELQ 155

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L +   G    +IAE+L LS  TV+ Y      KL   N  +    AIR G +
Sbjct: 156 TLTMIASGKRLSDIAEELTLSPKTVSVYRARVLEKLGLANNSELTVYAIRNGLV 209


>gi|269929119|ref|YP_003321440.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788476|gb|ACZ40618.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 209

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 139 LMLANEVIIEAHGACYQ----------VITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                + I+ A  A  Q                   +    A   LT RE   LQL   G
Sbjct: 102 RDADPDEIVAALRAAGQGLTVLDPRAVPFLTTDAAPRASPDAGEPLTPREREILQLIAQG 161

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
             ++ IA +LG+S HTV  ++GS   KL A +
Sbjct: 162 LPNKSIALELGISEHTVKFHVGSILDKLGASS 193


>gi|269838263|ref|YP_003320491.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787526|gb|ACZ39669.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 875

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                   + I        ++  A   LT RE   L L   G ++ EIA +L LS  TV 
Sbjct: 779 RRLRAVGARGIPRGPRPSTRQHPA--GLTRREAEVLDLMAQGLSNTEIAGRLYLSPKTVE 836

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231
            ++ S   KL+  +R +AI  A R 
Sbjct: 837 HHVSSILTKLNVSSRHEAIRVAERR 861


>gi|152999376|ref|YP_001365057.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|151363994|gb|ABS06994.1| response regulator receiver protein [Shewanella baltica OS185]
          Length = 221

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
              ++ +      Q +    E+     +  + LT RE + +Q    G  ++EIA +L +S
Sbjct: 124 DRTLLSKVFRRVVQKLDGNNEMLSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCIS 183

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            HTV A++ S   K  + NR++ +  A
Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|126731547|ref|ZP_01747353.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126708083|gb|EBA07143.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 200

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 45/112 (40%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V     K+G   F  + L   + +      A  ++      + K    A   LT RE   
Sbjct: 88  VADAALKSGAQGFIPKTLSARSLLTAARFMAAGEIYAPIEFMQKDPDDAGGMLTRRELEV 147

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+   DG  ++EIA  L L   TV  ++ + + KL+A NR  A   A   G 
Sbjct: 148 LRGICDGKANKEIARDLDLQEVTVKLHVKTLSRKLEARNRTHAAMIARDRGL 199


>gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LTERE   L L  +G ++ +I EKL LS  T+  Y+ S   K ++ NR + +  A++  
Sbjct: 153 SLTEREQQVLDLLTEGRSNVKIGEKLHLSPRTIEKYVSSLLRKTESNNRAELVRFALKNH 212

Query: 233 YI 234
            I
Sbjct: 213 LI 214


>gi|320007816|gb|ADW02666.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 220

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183
                  + T     + +                        S     R L+ RE   L+
Sbjct: 109 AGGVKGYVVTGTRTNIGHPTRPGMAPIGANAARMHRRPPGTPSHPGGYRELSGREVEVLR 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G +++ I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|297156972|gb|ADI06684.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis
            BCW-1]
          Length = 1039

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 162  ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                   + A  LT RE   L+L   G ++ +IAE+L +S  T + ++ +   KL+   R
Sbjct: 957  AAEPTDPAEALGLTPRERDVLRLVALGRSNRQIAEELFISPKTASVHVSNILAKLEVSGR 1016

Query: 222  IQAIAKAIRFGYI 234
             +A A A R   +
Sbjct: 1017 GEAAAVAHRLRLV 1029


>gi|282860465|ref|ZP_06269531.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282564201|gb|EFB69737.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 251

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 148 EAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                C   +       +   + A       LT+RE   L L      +  IA  LG+S 
Sbjct: 114 ALDAVCRGAMVIAPAPSRTPPAPAAHGSLSPLTQREREVLALVATQPDNTAIALALGVSP 173

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV +++     KL   +R Q +  A     I
Sbjct: 174 LTVKSHINRVMRKLAVSSRAQLVILAYESRLI 205


>gi|271961694|ref|YP_003335890.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504869|gb|ACZ83147.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 204

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE+  L+L  +G  + EIA +L LS  TV  +L +   KL+A +R  A+  A   G
Sbjct: 143 PLTPRESDVLRLTAEGAEATEIAARLFLSAGTVRNHLTAIVSKLNARSRTDAVRIAGDAG 202

Query: 233 YI 234
           +I
Sbjct: 203 WI 204


>gi|256830064|ref|YP_003158792.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579240|gb|ACU90376.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 222

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
               V+    ++  +++        +L+ RE   ++L  +G T EEIA KL +S  TV  
Sbjct: 132 LSPSVLRRLSDISGRKAKTVDASYGSLSLREQQVMRLLAEGLTPEEIAAKLFVSRKTVLN 191

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  +   KL   + +  +  A R G I
Sbjct: 192 HRYAIMTKLGIKSPVAFVRHAARLGLI 218


>gi|297202175|ref|ZP_06919572.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713613|gb|EDY57647.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 205

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+RE   L+ A DG T+ E+A+ L LS  TV  YL +A  KL   NR +A+  A  
Sbjct: 142 ANPLTDREREVLRAAADGSTNAELAQTLHLSQGTVRNYLSTAIQKLAVRNRAEAVRIARE 201

Query: 231 FGYI 234
            G++
Sbjct: 202 KGWL 205


>gi|167725393|ref|ZP_02408629.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
          Length = 86

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  +  LT +E   L+L G   +++EIA  + +   TV  +L +   KLDA +R  A+
Sbjct: 14  PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 73

Query: 226 AKAIRFGYI 234
            +A+  G +
Sbjct: 74  RRALVLGLL 82


>gi|156741914|ref|YP_001432043.1| ATP-dependent transcription regulator LuxR [Roseiflexus
           castenholzii DSM 13941]
 gi|156233242|gb|ABU58025.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Roseiflexus castenholzii DSM 13941]
          Length = 880

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLTERETSCLQ 183
             +   FL     +    H          LE F     A           LT+RE   L+
Sbjct: 767 EGYVRIFLDAGARLARLLHRIGSAYAGRLLEAFPSSVRARVANLTESPEPLTDRERDVLR 826

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L   G T  +IA +L +SV+TV  ++ S   KL   +R  A+A+A     
Sbjct: 827 LMARGLTYRQIASELVVSVNTVRYHIKSLYSKLQVNSRTLALARAHELHL 876


>gi|331661923|ref|ZP_08362846.1| fimbriae Z protein [Escherichia coli TA143]
 gi|331666890|ref|ZP_08367764.1| fimbriae Z protein [Escherichia coli TA271]
 gi|331060345|gb|EGI32309.1| fimbriae Z protein [Escherichia coli TA143]
 gi|331066114|gb|EGI37998.1| fimbriae Z protein [Escherichia coli TA271]
          Length = 194

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 134 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 193

Query: 234 I 234
           I
Sbjct: 194 I 194


>gi|323938486|gb|EGB34737.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|323963302|gb|EGB58866.1| luxR family protein regulatory protein [Escherichia coli H489]
          Length = 194

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 134 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 193

Query: 234 I 234
           I
Sbjct: 194 I 194


>gi|323163987|gb|EFZ49795.1| response regulator [Shigella sonnei 53G]
          Length = 194

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 134 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 193

Query: 234 I 234
           I
Sbjct: 194 I 194


>gi|320660398|gb|EFX27869.1| transcriptional regulator FimZ [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|300940508|ref|ZP_07155079.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300454708|gb|EFK18201.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 155 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 214

Query: 234 I 234
           I
Sbjct: 215 I 215


>gi|300903191|ref|ZP_07121123.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301301692|ref|ZP_07207827.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300404806|gb|EFJ88344.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300843189|gb|EFK70949.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315256366|gb|EFU36334.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 155 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 214

Query: 234 I 234
           I
Sbjct: 215 I 215


>gi|300897236|ref|ZP_07115679.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300929101|ref|ZP_07144595.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|301020323|ref|ZP_07184432.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300358978|gb|EFJ74848.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300398802|gb|EFJ82340.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300462974|gb|EFK26467.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 155 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 214

Query: 234 I 234
           I
Sbjct: 215 I 215


>gi|297516794|ref|ZP_06935180.1| transcriptional regulator FimZ [Escherichia coli OP50]
          Length = 192

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 132 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 191

Query: 234 I 234
           I
Sbjct: 192 I 192


>gi|293408685|ref|ZP_06652524.1| hypothetical protein ECEG_03632 [Escherichia coli B354]
 gi|291471863|gb|EFF14346.1| hypothetical protein ECEG_03632 [Escherichia coli B354]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|293418602|ref|ZP_06661037.1| hypothetical protein ECCG_03486 [Escherichia coli B088]
 gi|291325130|gb|EFE64545.1| hypothetical protein ECCG_03486 [Escherichia coli B088]
 gi|323184837|gb|EFZ70207.1| response regulator [Escherichia coli 1357]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|256424138|ref|YP_003124791.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039046|gb|ACU62590.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 255

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L+L   G    +IAE++ ++  TV  Y      +L+  N ++A+A A+    
Sbjct: 195 LTEREVEVLRLHAQGLNINQIAERIFVAPDTVKYYRRRIFERLEVSNIVEALAYAVNAKL 254

Query: 234 I 234
           I
Sbjct: 255 I 255


>gi|291281446|ref|YP_003498264.1| Fimbrial Z protein [Escherichia coli O55:H7 str. CB9615]
 gi|209777794|gb|ACI87209.1| fimbrial Z protein [Escherichia coli]
 gi|290761319|gb|ADD55280.1| Fimbrial Z protein [Escherichia coli O55:H7 str. CB9615]
          Length = 231

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 230

Query: 234 I 234
           I
Sbjct: 231 I 231


>gi|213416840|ref|ZP_03349984.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 84

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 24  LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 83

Query: 234 I 234
           I
Sbjct: 84  I 84


>gi|209917751|ref|YP_002291835.1| transcriptional regulator FimZ [Escherichia coli SE11]
 gi|300819561|ref|ZP_07099755.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300820219|ref|ZP_07100371.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300920641|ref|ZP_07137059.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300925813|ref|ZP_07141667.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300949234|ref|ZP_07163266.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300954356|ref|ZP_07166813.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|301327812|ref|ZP_07221006.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|309797189|ref|ZP_07691585.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331672065|ref|ZP_08372861.1| fimbriae Z protein [Escherichia coli TA280]
 gi|209911010|dbj|BAG76084.1| putative fimbrial regulator [Escherichia coli SE11]
 gi|300318655|gb|EFJ68439.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300412380|gb|EFJ95690.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300418107|gb|EFK01418.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300451315|gb|EFK14935.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300527004|gb|EFK48073.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300527887|gb|EFK48949.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300845649|gb|EFK73409.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|308119173|gb|EFO56435.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|324019561|gb|EGB88780.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|331071054|gb|EGI42413.1| fimbriae Z protein [Escherichia coli TA280]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 155 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 214

Query: 234 I 234
           I
Sbjct: 215 I 215


>gi|170681356|ref|YP_001742679.1| transcriptional regulator FimZ [Escherichia coli SMS-3-5]
 gi|218698902|ref|YP_002406531.1| transcriptional regulator FimZ [Escherichia coli IAI39]
 gi|170519074|gb|ACB17252.1| fimbriae Z protein [Escherichia coli SMS-3-5]
 gi|218368888|emb|CAR16638.1| DNA-binding transcriptional regulator, isolated component of a
           two-component regulator system [Escherichia coli IAI39]
 gi|284920345|emb|CBG33405.1| fimbrial transcriptional regulator [Escherichia coli 042]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|331651498|ref|ZP_08352518.1| fimbriae Z protein [Escherichia coli M718]
 gi|331050771|gb|EGI22828.1| fimbriae Z protein [Escherichia coli M718]
          Length = 231

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 230

Query: 234 I 234
           I
Sbjct: 231 I 231


>gi|157160059|ref|YP_001457377.1| transcriptional regulator FimZ [Escherichia coli HS]
 gi|170021084|ref|YP_001726038.1| transcriptional regulator FimZ [Escherichia coli ATCC 8739]
 gi|188496026|ref|ZP_03003296.1| fimbriae Z protein [Escherichia coli 53638]
 gi|193067761|ref|ZP_03048728.1| fimbriae Z protein [Escherichia coli E110019]
 gi|194437417|ref|ZP_03069514.1| fimbriae Z protein [Escherichia coli 101-1]
 gi|218553099|ref|YP_002386012.1| transcriptional regulator FimZ [Escherichia coli IAI1]
 gi|218703819|ref|YP_002411338.1| transcriptional regulator FimZ [Escherichia coli UMN026]
 gi|253774477|ref|YP_003037308.1| transcriptional regulator FimZ [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160603|ref|YP_003043711.1| transcriptional regulator FimZ [Escherichia coli B str. REL606]
 gi|256023848|ref|ZP_05437713.1| transcriptional regulator FimZ [Escherichia sp. 4_1_40B]
 gi|293403656|ref|ZP_06647747.1| fimbriae expression FimZ transcriptional regulator [Escherichia
           coli FVEC1412]
 gi|293413791|ref|ZP_06656440.1| hypothetical protein ECDG_00336 [Escherichia coli B185]
 gi|298379266|ref|ZP_06989147.1| fimbriae expression FimZ transcriptional regulator [Escherichia
           coli FVEC1302]
 gi|312970632|ref|ZP_07784813.1| response regulator [Escherichia coli 1827-70]
 gi|157065739|gb|ABV04994.1| fimbriae Z protein [Escherichia coli HS]
 gi|169756012|gb|ACA78711.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|188491225|gb|EDU66328.1| fimbriae Z protein [Escherichia coli 53638]
 gi|192959173|gb|EDV89609.1| fimbriae Z protein [Escherichia coli E110019]
 gi|194423586|gb|EDX39576.1| fimbriae Z protein [Escherichia coli 101-1]
 gi|218359867|emb|CAQ97409.1| DNA-binding transcriptional regulator, isolated component of a
           two-component regulator system [Escherichia coli IAI1]
 gi|218430916|emb|CAR11790.1| DNA-binding transcriptional regulator, isolated component of a
           two-component regulator system [Escherichia coli UMN026]
 gi|242376314|emb|CAQ31007.1| FimZ transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253325521|gb|ACT30123.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972504|gb|ACT38175.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253976714|gb|ACT42384.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|291429509|gb|EFF02529.1| fimbriae expression FimZ transcriptional regulator [Escherichia
           coli FVEC1412]
 gi|291433849|gb|EFF06822.1| hypothetical protein ECDG_00336 [Escherichia coli B185]
 gi|298280379|gb|EFI21883.1| fimbriae expression FimZ transcriptional regulator [Escherichia
           coli FVEC1302]
 gi|309700797|emb|CBJ00094.1| fimbrial transcriptional regulator [Escherichia coli ETEC H10407]
 gi|310337281|gb|EFQ02419.1| response regulator [Escherichia coli 1827-70]
 gi|332341899|gb|AEE55233.1| transcriptional regulator FimZ [Escherichia coli UMNK88]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|83647758|ref|YP_436193.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635801|gb|ABC31768.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 223

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAARNLTERE 178
           + L     G++  +S  + +   +              I       +       ++T R+
Sbjct: 106 LSLRSGAIGFISKSSSAMEINLAIRQILNGKQYVPNFYIHRNQTPVQDSQLRLDSITPRQ 165

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              LQL   G  ++ I  +L L+  TV ++L +  + L+  NR + ++ A R   +
Sbjct: 166 MEVLQLLAKGLPNKRICSELSLTEDTVKSHLKALFMHLNVHNRTECVSVATRLHLV 221


>gi|15829851|ref|NP_308624.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128519|ref|NP_415068.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107402|ref|AP_001182.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157157441|ref|YP_001461723.1| transcriptional regulator FimZ [Escherichia coli E24377A]
 gi|168747779|ref|ZP_02772801.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4113]
 gi|168754650|ref|ZP_02779657.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4401]
 gi|168760301|ref|ZP_02785308.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4501]
 gi|168774612|ref|ZP_02799619.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4196]
 gi|168779039|ref|ZP_02804046.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4076]
 gi|168786397|ref|ZP_02811404.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC869]
 gi|168798110|ref|ZP_02823117.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC508]
 gi|170080118|ref|YP_001729438.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|191168110|ref|ZP_03029908.1| fimbriae Z protein [Escherichia coli B7A]
 gi|193064132|ref|ZP_03045216.1| fimbriae Z protein [Escherichia coli E22]
 gi|194429573|ref|ZP_03062093.1| fimbriae Z protein [Escherichia coli B171]
 gi|194432765|ref|ZP_03065050.1| fimbriae Z protein [Shigella dysenteriae 1012]
 gi|195936102|ref|ZP_03081484.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805821|ref|ZP_03248158.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4206]
 gi|208816194|ref|ZP_03257373.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4045]
 gi|208822823|ref|ZP_03263141.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4042]
 gi|209400942|ref|YP_002269188.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4115]
 gi|217325589|ref|ZP_03441673.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|218693998|ref|YP_002401665.1| transcriptional regulator FimZ [Escherichia coli 55989]
 gi|238899816|ref|YP_002925612.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|254791723|ref|YP_003076560.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020506|ref|ZP_05434371.1| transcriptional regulator FimZ [Shigella sp. D9]
 gi|260853751|ref|YP_003227642.1| putative DNA-binding transcriptional regulator FimZ [Escherichia
           coli O26:H11 str. 11368]
 gi|260866691|ref|YP_003233093.1| putative DNA-binding transcriptional regulator FimZ [Escherichia
           coli O111:H- str. 11128]
 gi|261224023|ref|ZP_05938304.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257717|ref|ZP_05950250.1| putative DNA-binding transcriptional regulator FimZ [Escherichia
           coli O157:H7 str. FRIK966]
 gi|307137178|ref|ZP_07496534.1| transcriptional regulator FimZ [Escherichia coli H736]
 gi|307314549|ref|ZP_07594151.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|331641057|ref|ZP_08342192.1| fimbriae Z protein [Escherichia coli H736]
 gi|331676205|ref|ZP_08376917.1| fimbriae Z protein [Escherichia coli H591]
 gi|84028127|sp|P0AEL9|FIMZ_ECO57 RecName: Full=Fimbriae Z protein
 gi|84028128|sp|P0AEL8|FIMZ_ECOLI RecName: Full=Fimbriae Z protein
 gi|1786747|gb|AAC73637.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13360055|dbj|BAB34020.1| fimbrial Z protein [Escherichia coli O157:H7 str. Sakai]
 gi|85674672|dbj|BAE76312.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|157079471|gb|ABV19179.1| fimbriae Z protein [Escherichia coli E24377A]
 gi|169887953|gb|ACB01660.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187769670|gb|EDU33514.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4196]
 gi|188017691|gb|EDU55813.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4113]
 gi|189002953|gb|EDU71939.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4076]
 gi|189358004|gb|EDU76423.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4401]
 gi|189369175|gb|EDU87591.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4501]
 gi|189373564|gb|EDU91980.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC869]
 gi|189379352|gb|EDU97768.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC508]
 gi|190901840|gb|EDV61591.1| fimbriae Z protein [Escherichia coli B7A]
 gi|192929161|gb|EDV82771.1| fimbriae Z protein [Escherichia coli E22]
 gi|194412370|gb|EDX28672.1| fimbriae Z protein [Escherichia coli B171]
 gi|194419027|gb|EDX35111.1| fimbriae Z protein [Shigella dysenteriae 1012]
 gi|208725622|gb|EDZ75223.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4206]
 gi|208732842|gb|EDZ81530.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4045]
 gi|208737016|gb|EDZ84700.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4042]
 gi|209162342|gb|ACI39775.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4115]
 gi|217321810|gb|EEC30234.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|218350730|emb|CAU96422.1| DNA-binding transcriptional regulator, isolated component of a
           two-component regulator system [Escherichia coli 55989]
 gi|238862256|gb|ACR64254.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|254591123|gb|ACT70484.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752400|dbj|BAI23902.1| predicted DNA-binding transcriptional regulator FimZ [Escherichia
           coli O26:H11 str. 11368]
 gi|257763047|dbj|BAI34542.1| predicted DNA-binding transcriptional regulator FimZ [Escherichia
           coli O111:H- str. 11128]
 gi|260450282|gb|ACX40704.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|306905867|gb|EFN36390.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|315059808|gb|ADT74135.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315135217|dbj|BAJ42376.1| transcriptional regulator FimZ [Escherichia coli DH1]
 gi|315616525|gb|EFU97142.1| response regulator [Escherichia coli 3431]
 gi|320180118|gb|EFW55059.1| transcriptional regulator FimZ [Shigella boydii ATCC 9905]
 gi|320192960|gb|EFW67600.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638314|gb|EFX08039.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           G5101]
 gi|320643718|gb|EFX12848.1| transcriptional regulator FimZ [Escherichia coli O157:H- str.
           493-89]
 gi|320649034|gb|EFX17621.1| transcriptional regulator FimZ [Escherichia coli O157:H- str. H
           2687]
 gi|320654612|gb|EFX22617.1| transcriptional regulator FimZ [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320665092|gb|EFX32189.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323153441|gb|EFZ39696.1| response regulator [Escherichia coli EPECa14]
 gi|323160888|gb|EFZ46813.1| response regulator [Escherichia coli E128010]
 gi|323178192|gb|EFZ63770.1| response regulator [Escherichia coli 1180]
 gi|323943154|gb|EGB39311.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323945200|gb|EGB41260.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323972188|gb|EGB67400.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324116773|gb|EGC10687.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326341308|gb|EGD65100.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. 1044]
 gi|326345915|gb|EGD69654.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. 1125]
 gi|331037855|gb|EGI10075.1| fimbriae Z protein [Escherichia coli H736]
 gi|331076263|gb|EGI47545.1| fimbriae Z protein [Escherichia coli H591]
 gi|332094215|gb|EGI99266.1| response regulator [Shigella boydii 5216-82]
 gi|332097292|gb|EGJ02273.1| response regulator [Shigella dysenteriae 155-74]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 150 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|41810|emb|CAA35973.1| fimZ [Escherichia coli]
 gi|1778450|gb|AAB40733.1| fimbriae Z protein [Escherichia coli]
          Length = 231

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 230

Query: 234 I 234
           I
Sbjct: 231 I 231


>gi|15800272|ref|NP_286284.1| transcriptional regulator FimZ [Escherichia coli O157:H7 EDL933]
 gi|332281688|ref|ZP_08394101.1| transcriptional regulator FimZ [Shigella sp. D9]
 gi|25298730|pir||H85553 fimbrial Z protein, probable signal transducer [imported] -
           Escherichia coli (strain O157:H7, substrain EDL933)
 gi|12513435|gb|AAG54892.1|AE005234_8 fimbrial Z protein; probable signal transducer [Escherichia coli
           O157:H7 str. EDL933]
 gi|209777788|gb|ACI87206.1| fimbrial Z protein [Escherichia coli]
 gi|209777790|gb|ACI87207.1| fimbrial Z protein [Escherichia coli]
 gi|209777792|gb|ACI87208.1| fimbrial Z protein [Escherichia coli]
 gi|209777796|gb|ACI87210.1| fimbrial Z protein [Escherichia coli]
 gi|323379624|gb|ADX51892.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|332104040|gb|EGJ07386.1| transcriptional regulator FimZ [Shigella sp. D9]
          Length = 231

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 230

Query: 234 I 234
           I
Sbjct: 231 I 231


>gi|83749981|ref|ZP_00946930.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551]
 gi|83723351|gb|EAP70580.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551]
          Length = 263

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 11/201 (5%)

Query: 36  YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95
              +  +             ++ ++       +        +  + +   P+ +      
Sbjct: 51  VCSHGRITAAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAA 107

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--------NEVII 147
             +    +  +           +A  V    H  G        + +          ++  
Sbjct: 108 APVAEIDRGWLAKFIAYDLRNAVADGVYDEGHCIGTYFSFHRLVSVNEPFLASVLRDLTP 167

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
             H    + + D  + +         L+ERE       G G ++ EIA    +S +TV  
Sbjct: 168 VLHRTLMRAVADTEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQ 227

Query: 208 YLGSATVKLDAVNRIQAIAKA 228
           +L     K    NR+     A
Sbjct: 228 HLKHIMDKTGCANRVGVAVLA 248


>gi|332828196|gb|EGK00908.1| hypothetical protein HMPREF9455_02697 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 216

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT  E   L+    G T++EIA    LS HT+  +  +   KL+  N  +AI  A+R G 
Sbjct: 149 LTVTEKEILKEIALGRTTKEIASNRNLSFHTIITHRKNIFRKLEVNNVHEAIKYAMRAGL 208

Query: 234 I 234
           +
Sbjct: 209 V 209


>gi|327459203|gb|EGF05551.1| two component system response regulator [Streptococcus sanguinis
           SK1057]
          Length = 227

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +++  E   +Q  G G +++E+A KL LS  TV  YL     KL+  +R Q    A++ 
Sbjct: 155 EDMSRTEWKIIQQIGFGISNKEVAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|312959247|ref|ZP_07773765.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311286507|gb|EFQ65070.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 148 ERLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRN 207

Query: 232 GYI 234
           G +
Sbjct: 208 GLV 210


>gi|302535539|ref|ZP_07287881.1| two component system response regulator [Streptomyces sp. C]
 gi|302444434|gb|EFL16250.1| two component system response regulator [Streptomyces sp. C]
          Length = 221

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              + R   A  L+ERE   L L G+G ++ +   +L +S  TV  Y+     KL   NR
Sbjct: 151 RGEEARRRVAE-LSERERGVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKLGCENR 209

Query: 222 IQAIAKAIRFGY 233
           +QA   A   G 
Sbjct: 210 VQAALLARDAGL 221


>gi|302519163|ref|ZP_07271505.1| two component transcriptional regulator [Streptomyces sp. SPB78]
 gi|302428058|gb|EFK99873.1| two component transcriptional regulator [Streptomyces sp. SPB78]
          Length = 235

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
               +V+    E   ++ + +         L+ RE   L L G G T+ +IAE+L L+  
Sbjct: 138 RMTSRVMARIREPEPEKPAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEK 197

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           TV   + S   KL    RIQA   A R 
Sbjct: 198 TVKNRVSSILGKLGVGRRIQAAMIAERL 225


>gi|297162710|gb|ADI12422.1| putative luxR family two-component response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 233

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 37/80 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           GA  +V+                L+ RE   L+L G+G T+ +IAE+L L+  TV   + 
Sbjct: 146 GATARVMARLRGPQPSGPVELERLSPREREILELIGEGLTNRQIAERLFLAEKTVKNRIS 205

Query: 211 SATVKLDAVNRIQAIAKAIR 230
           +   KL    RIQA   A R
Sbjct: 206 TILSKLGVGRRIQAAVIAER 225


>gi|283785659|ref|YP_003365524.1| response regulator [Citrobacter rodentium ICC168]
 gi|282949113|emb|CBG88720.1| response regulator [Citrobacter rodentium ICC168]
          Length = 218

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 129 IAQQMALSQIEPEKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209


>gi|212633209|ref|YP_002309734.1| regulatory protein LuxR:response regulator receiver [Shewanella
           piezotolerans WP3]
 gi|212554693|gb|ACJ27147.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella
           piezotolerans WP3]
          Length = 188

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL       +  L ++E   LQLAG+G ++ EIA  L ++  TV  YL  A  KL A NR
Sbjct: 116 ELAIMAVGESDPLNDKERKALQLAGEGKSTSEIAAMLFIAEGTVRNYLSEAISKLHATNR 175

Query: 222 IQAIAKAIRFGYI 234
           I A   A + G++
Sbjct: 176 IDAARIAQQKGWL 188


>gi|319902814|ref|YP_004162542.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
 gi|319417845|gb|ADV44956.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
          Length = 220

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  E S L+    G T++EIA +  LS HTVN++  +   KL   N  +A   A++ 
Sbjct: 151 DLLTAAERSILKEIALGKTTKEIAAEKNLSFHTVNSHRKNIFRKLSVNNAHEATKYAMKA 210

Query: 232 GYI 234
           G +
Sbjct: 211 GIV 213


>gi|290475675|ref|YP_003468564.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004]
 gi|289174997|emb|CBJ81800.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004]
          Length = 219

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L   + +    L+ERE   + +   G    EI+  L LS  TVN+Y      KL+
Sbjct: 133 MALDQLSPPKENPLAELSERELQIMTMITQGRKVNEISTLLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 IKGDVELTHMAIRCGLL 209


>gi|239986838|ref|ZP_04707502.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 215

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+L   G T+ EIA +L +   T   ++ +   K  A +R QA+  A   G
Sbjct: 151 RLTDREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESG 210

Query: 233 YI 234
           +I
Sbjct: 211 FI 212


>gi|148254242|ref|YP_001238827.1| response regulator FixJ [Bradyrhizobium sp. BTAi1]
 gi|146406415|gb|ABQ34921.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 205

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
            F       +IE      +       + +       +L+ RE   +     G +++ IA 
Sbjct: 106 PFEDERLVAMIETAIRQAEPAAKNESITQDILGRIASLSPRERQVMDGLMAGLSNKLIAR 165

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +  +S  T+  Y  +   K+ A +  + +  A+R G
Sbjct: 166 EYDISPRTIEVYRANVMTKMGANSLSELVRLAMRAG 201


>gi|307322363|ref|ZP_07601723.1| Autoinducer-binding domain protein [Sinorhizobium meliloti AK83]
 gi|306891981|gb|EFN22807.1| Autoinducer-binding domain protein [Sinorhizobium meliloti AK83]
          Length = 179

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 8/167 (4%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + + +  +  L  +   +    +A   +     F         + NY  +  D       
Sbjct: 15  ARTREMFNGALTELARELGFEYYAYLNLQPVGTFA--------VSNYSPEWQDRYFSKSF 66

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
           +  D  +    S +    W S     V     +       G    +GI  PV   F +  
Sbjct: 67  SEIDPVVQIAKSTMRAFTWSSENTRKVKSRRVRQFYLDAAGFGIRSGITIPVATAFRRIA 126

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
            +   S    L   + I+   A   V    + + + +       + R
Sbjct: 127 MLTIASHKPCLLLNLDIDPVAAATAVAQLHVRIEQAQIEPTAKPSIR 173


>gi|229589739|ref|YP_002871858.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361605|emb|CAY48483.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 218

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 37/98 (37%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G   F  + +               +V+  +         +  +LT R+   L L   G
Sbjct: 104 QGADGFIGKNVDPTGIAEAIMAIREGEVVVKYNPENPLLDPSLSSLTARQKQVLGLIAAG 163

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            T++EIA +LG+S  TV  ++ +    L    R  A A
Sbjct: 164 KTNKEIARQLGISPFTVRIHVSTLFKTLGVPTRAAAAA 201


>gi|256375752|ref|YP_003099412.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920055|gb|ACU35566.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 214

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 151 GACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +++         + +     L+ RE   L+L  DG  +  IA +LGLS  TV +Y+
Sbjct: 129 RIAARLLPRLRAGRLLRPNPQLDALSTRERQVLELLSDGLPNAAIATELGLSEATVKSYV 188

Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232
            +  +KL   NR+QA   A + G
Sbjct: 189 STVLMKLGVENRVQAALAAHQVG 211


>gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 309

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 25/142 (17%)

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148
           W   +E+   E  G  +++         G+          N ++   +    ++++  + 
Sbjct: 188 WMREREKGTGERHGSFTLQRAAQ----TGLQISYLGAIGANEFLFRLTTENGMSDDETLR 243

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            H                       LT RE+  L     G ++ +I E LGLS  TV  +
Sbjct: 244 QHF---------------------QLTPRESEVLLWIAKGKSNRDIGEILGLSSRTVTKH 282

Query: 209 LGSATVKLDAVNRIQAIAKAIR 230
           L    VKL   NR  A  KA +
Sbjct: 283 LEQIYVKLGVENRASAAVKATQ 304


>gi|254239749|ref|ZP_04933071.1| hypothetical protein PA2G_00374 [Pseudomonas aeruginosa 2192]
 gi|126193127|gb|EAZ57190.1| hypothetical protein PA2G_00374 [Pseudomonas aeruginosa 2192]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 9/145 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF------HKNGYVIFTSEFLMLANEV 145
           +       +  ++   L         I   +             G   F  + +      
Sbjct: 55  LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114

Query: 146 IIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                    +V+  +     L  + S     LTER+   L+L   G +++EI   L +S 
Sbjct: 115 RAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227
           +TV  ++ S    LD  +R  A  K
Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|307330274|ref|ZP_07609421.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884071|gb|EFN15110.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 233

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                +    L+ERE   L+L  DG ++ EIA ++ +   TV  ++G+   KL   +R Q
Sbjct: 160 EASARALGERLSEREAVVLRLMTDGLSNSEIAARMAVGPATVKTHVGAVLTKLGVRDRTQ 219

Query: 224 AIAKAIRFGYI 234
           A+  A   G++
Sbjct: 220 AVIAAYESGFV 230


>gi|300716154|ref|YP_003740957.1| Response regulator protein [Erwinia billingiae Eb661]
 gi|299061990|emb|CAX59106.1| Response regulator protein [Erwinia billingiae Eb661]
          Length = 219

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+    ++    A
Sbjct: 145 SPFDSLSERELQIMLMITKGQKVADISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLA 204

Query: 229 IRFGY 233
           IR G 
Sbjct: 205 IRHGL 209


>gi|296167213|ref|ZP_06849619.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897454|gb|EFG77054.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 238

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   L+L  +G ++  I E+L +S +T   ++ +  VK  A NR QA   A   
Sbjct: 175 DGLTEREVEVLRLLAEGLSNRAIGERLFISTNTAANHVRNILVKTGAANRTQAAMYAADH 234

Query: 232 GYI 234
             +
Sbjct: 235 ELL 237


>gi|292490863|ref|YP_003526302.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291579458|gb|ADE13915.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 213

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 118 IAFPVRLGFHKNGYVIFTSE----FLMLANEVIIEAHGACYQV---ITDFLELFKKRSSA 170
           I              +             N++++E      ++     +  +  ++ +  
Sbjct: 83  IFISAHGSVPDAVGALHGGAIDFLMKPFDNQILLERIERSIKLDRKRRETRQQQEEIAQR 142

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              LT RE   ++L   G  ++ +A +LG+S  TV  +      KL+A N    I  A 
Sbjct: 143 VAQLTSRERQVMELIVKGKPNKVVAIELGISTKTVEIHRARVMEKLEAKNLADLIHLAR 201


>gi|188533225|ref|YP_001907022.1| Nitrate/nitrite response regulator protein NarP [Erwinia
           tasmaniensis Et1/99]
 gi|188028267|emb|CAO96125.1| Nitrate/nitrite response regulator protein NarP [Erwinia
           tasmaniensis Et1/99]
          Length = 210

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAARNLTER 177
           F V       GY++  S+   L  ++I+ A G       +     L K   +    LT R
Sbjct: 95  FTVLREAGVKGYLLKNSDPETLLAQIIVVAEGGVAYSPGLEAPDALDKWIHNPLAILTVR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           E   ++    G  +++IAE L +S  TV  ++ S   KL   +R+ A    + 
Sbjct: 155 EQEVMREVASGLANKQIAEMLAISEQTVKVHIRSVLRKLHVRSRVAATVLWLE 207


>gi|109898298|ref|YP_661553.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700579|gb|ABG40499.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 213

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIA 195
               E++        +++    ++   +  A       LT  +   LQL  DG  +++IA
Sbjct: 114 DAVRELLEGEQWLPNELVEQVQKIEDSQEQAFAGKLAQLTPHQLKVLQLMADGLLNKQIA 173

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +LG+S  T+  ++ +   KL   NR QA
Sbjct: 174 YELGVSESTIKQHVSAVLHKLGFNNRTQA 202


>gi|332527516|ref|ZP_08403568.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332111923|gb|EGJ11901.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 214

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 152 ACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
              +++  F +  K ++S      LT+RE+  L     GYT  EI  +LGLS HT+  Y+
Sbjct: 129 IARRMMAHFTQKAKPQTSLLPHVQLTDRESEVLLRVAKGYTLPEIGVQLGLSRHTIADYV 188

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL+  +R +A  +A R G 
Sbjct: 189 KQIYRKLNVSSRAEAALEAQRLGL 212


>gi|291007043|ref|ZP_06565016.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 198

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 12/170 (7%)

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI------AFPVRLGFH 127
           D  +F  +S    ++    Q    +     L           A +        P      
Sbjct: 32  DVVVFAADSVTSEVLADLRQSAQRVSVPRVLVTNELNPANVLAAVESRVVAVLPRTAATG 91

Query: 128 KN---GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                  +   S   ++  +++ E       +  + L     R   A  LT RE   L+L
Sbjct: 92  ARLINSVLAAASGGGVMPPDLLGELLKQVDYLQREVLT---PRGLNASGLTTREIDVLRL 148

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             DG  + EIA+KL  S  TV   +   T +L+  NR  A+A A+R G I
Sbjct: 149 MADGLDTAEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGVI 198


>gi|226310881|ref|YP_002770775.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226093829|dbj|BAH42271.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 602

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 30/64 (46%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+RE   LQ+   G   + IA KL LS  TV  Y  +   KL   NR  A+ K   
Sbjct: 539 AYGLTKREQEILQMLAQGMRYKTIASKLYLSDGTVRNYASALYDKLGVRNRDDAVQKGKM 598

Query: 231 FGYI 234
            G +
Sbjct: 599 EGLV 602


>gi|92115904|ref|YP_575633.1| two component LuxR family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91798798|gb|ABE61173.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 231

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                  +   L  +       LT ++   L +  +G  +++IA +LG+S  T+ A++ +
Sbjct: 143 LSAAADPEMTRLRDRLV----TLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSA 198

Query: 212 ATVKLDAVNRIQAIAKAIR 230
              KL   +R QA+  A R
Sbjct: 199 ILQKLGVDSRTQAVIAAAR 217


>gi|288927298|ref|ZP_06421145.1| transcriptional regulator [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330132|gb|EFC68716.1| transcriptional regulator [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 210

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+ E   L+    G T++EIAEK   S HTVN +  +   KL+  N  +A   A+R G
Sbjct: 142 KLTKTEMEVLRDIALGLTTKEIAEKRFSSFHTVNTHRKNIFRKLNVNNVHEATKYALRAG 201

Query: 233 YI 234
            +
Sbjct: 202 MV 203


>gi|255531519|ref|YP_003091891.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344503|gb|ACU03829.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 210

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RET  L L   G    +IA +L + + TV  ++ +  +KLD  ++  AI  A 
Sbjct: 146 PDSPLTKRETQILSLMSRGKDRSQIANELFIEIETVKTHIKNIYLKLDVNSKADAIKVAK 205

Query: 230 RFGYI 234
               +
Sbjct: 206 NNRLV 210


>gi|126740015|ref|ZP_01755705.1| transcriptional regulator, LuxR family/sensory box protein
           [Roseobacter sp. SK209-2-6]
 gi|126718834|gb|EBA15546.1| transcriptional regulator, LuxR family/sensory box protein
           [Roseobacter sp. SK209-2-6]
          Length = 211

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           + +  F +L ++R    + LT RE     L G+G TS+EIA  L LS  TV  + GS   
Sbjct: 120 RAVWSFADLSEQR--PYQPLTRREREVYSLLGEGQTSKEIARTLNLSYRTVEVHRGSLLK 177

Query: 215 KLDAVNRIQA 224
           K+   N    
Sbjct: 178 KMGVSNTAAL 187


>gi|154687277|ref|YP_001422438.1| ComA [Bacillus amyloliquefaciens FZB42]
 gi|126362996|emb|CAM35814.1| two-component response regulator ComA [Bacillus amyloliquefaciens
           FZB42]
 gi|154353128|gb|ABS75207.1| ComA [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +L  +++++       +     +      S    LT RE   LQ    G T++EIA+ L 
Sbjct: 120 VLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALH 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           LS  ++   L S   KL+  +R +A+  A
Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIA 208


>gi|60680121|ref|YP_210265.1| LuxR family transcriptional regulator [Bacteroides fragilis NCTC
           9343]
 gi|265765259|ref|ZP_06093534.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|60491555|emb|CAH06307.1| putative LuxR family transcriptional regulator [Bacteroides
           fragilis NCTC 9343]
 gi|263254643|gb|EEZ26077.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16]
          Length = 199

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            I++ H   +       ++     +    L+ RE   L L   G  ++EIA+KL + + T
Sbjct: 105 DILKLHQHAHHDGYPVKDMPPTPPTTGHELSAREIEVLVLITKGLINKEIADKLNIGLTT 164

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  +  + T KL   +       A+  GY+
Sbjct: 165 VITHRKNITEKLGIKSVSGLTIYAVMNGYV 194


>gi|319795599|ref|YP_004157239.1| autoinducer-binding domain protein [Variovorax paradoxus EPS]
 gi|315598062|gb|ADU39128.1| Autoinducer-binding domain protein [Variovorax paradoxus EPS]
          Length = 377

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 65/248 (26%), Gaps = 38/248 (15%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD-LDSGDIPNILIETYGDDFLF 78
           RL L++  ++   F      +          +  L +Y   D  +          D    
Sbjct: 124 RLSLVKQALRQNGFEWLAYGTLRPRNGGLHPMRFLSSYAHQDWAEHYFAHGFHEVDVRHK 183

Query: 79  HFNSGLLPIIWQSIQEETVIESS------------GQLSVRLEGGLLPFAGIAFPVRLGF 126
              +  LP++W     E                   +  +         +G    +RL  
Sbjct: 184 DAPASGLPLVWDLESLEQAQSRQPLRLDSAETAARQRRFLDDMERHGIRSG--VFLRLAT 241

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-------------------KR 167
                       L                 +   L + +                     
Sbjct: 242 PGQSGDHTFISCLSRTPSRRWIIQRVTGNALALGLSIHEYVSQHVLAGCAAQASQSPAAD 301

Query: 168 SSAARNL----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +   L    +  + + L+    G + +EIA +LGLS + V+ ++     +    NR++
Sbjct: 302 GPSNDGLAGLISPTQRAILEELMAGCSDKEIAYRLGLSGYAVDYHMRQLRRRFQVRNRVK 361

Query: 224 AIAKAIRF 231
             + A   
Sbjct: 362 LASVAAAL 369


>gi|158314279|ref|YP_001506787.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158109684|gb|ABW11881.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 211

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTER 177
           +  G             L+ A   I          +T  +    +   A       L  R
Sbjct: 96  IMAGASGYLLKQIRGNDLVGAIRTIAAGRSLLDPAVTQKVLARLRDEPAEDEQLAALGSR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L+L  +G T+ +IA  + LS  TV  Y+ +   KL   +R QA   A R 
Sbjct: 156 ERQILRLIAEGMTNRQIAGCVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARL 209


>gi|307565264|ref|ZP_07627757.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
 gi|307345933|gb|EFN91277.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
          Length = 214

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             C Q     +E         + LT+ ET  L     G T++EIA K   S HT+N +  
Sbjct: 124 FVCKQAKEMLIEKESSMCVEQKRLTKTETEILIDIAQGLTTKEIANKRYSSFHTINTHRK 183

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   KL      +A   A+R G +
Sbjct: 184 NIFRKLSVNTAHEATRYALRAGLL 207


>gi|269796113|ref|YP_003315568.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098298|gb|ACZ22734.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 220

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 6/125 (4%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLELFKKRSS 169
                  +   +      +     +    + +  +          Q     +   +    
Sbjct: 101 RAGARGYVTKAISGQELGDAIDRVSGGDAVFSPRLAGFVLDSFGTQAADVAVADDE---- 156

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L+ RE   ++L   GY+  E+A +L +S+ TV  ++ +   KL   +R +    A 
Sbjct: 157 -LDRLSAREQEVMRLIARGYSYREVASELFISIKTVETHVSAVLRKLQLSSRHELTRWAA 215

Query: 230 RFGYI 234
               +
Sbjct: 216 ARRLL 220


>gi|152970956|ref|YP_001336065.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|330001009|ref|ZP_08303869.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
 gi|150955805|gb|ABR77835.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|328537813|gb|EGF64008.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
          Length = 235

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           A+     A     Q+    +E  K  S  A +L+ERE   + +   G    EI+E+L LS
Sbjct: 136 ASGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLS 194

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             TVN+Y      KL+    ++    AIR G 
Sbjct: 195 PKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 226


>gi|148273924|ref|YP_001223485.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831854|emb|CAN02824.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 206

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  +   +L+ RE   L+L  DG ++ ++A +L ++  TV ++L     KL   +R
Sbjct: 133 RLLARMRAPRVSLSSREIEVLRLVADGASNTDVAARLHITDATVKSHLVHVFSKLGVSSR 192

Query: 222 IQAIAKAIRFGYI 234
             A+A A   G +
Sbjct: 193 TGAVAAARELGVL 205


>gi|85716119|ref|ZP_01047095.1| response regulator FixJ [Nitrobacter sp. Nb-311A]
 gi|85697118|gb|EAQ35000.1| response regulator FixJ [Nitrobacter sp. Nb-311A]
          Length = 205

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  + +S    L++RE   +     G +++ IA +  +S  T+  Y  +   K+ A N  
Sbjct: 132 VSAEIASRLATLSQRERQVMDGLVAGLSNKLIAREHNISPRTIEVYRANVMTKMQAHNLS 191

Query: 223 QAIAKAIRFGYI 234
           + I  A+R G +
Sbjct: 192 ELIRLALRAGIL 203


>gi|124266879|ref|YP_001020883.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124259654|gb|ABM94648.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 240

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 153 CYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             +V         +         L+ RE   L L  +G +++ IA +LG++  TV  ++ 
Sbjct: 154 ATEVHATPPSARDRAVPADPLAQLSARERETLALVAEGCSNKLIARQLGIAEATVKIHVQ 213

Query: 211 SATVKLDAVNRIQAIAKAIRFG 232
           +   KL   +R+ A A   R G
Sbjct: 214 NLLRKLGLESRVHAAAWYARLG 235


>gi|163787697|ref|ZP_02182144.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877585|gb|EDP71642.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 217

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L    +  T+++I+EKL +S  TV  +  +  +K  A N +  I  AI  G
Sbjct: 156 KLTRREHEVLIAISEELTTQQISEKLFISPKTVETHRSNIILKFGAKNSVGIIKMAIENG 215

Query: 233 YI 234
            +
Sbjct: 216 LL 217


>gi|160873996|ref|YP_001553312.1| LuxR family transcriptional regulator [Shewanella baltica OS195]
 gi|160859518|gb|ABX48052.1| transcriptional regulator, LuxR family [Shewanella baltica OS195]
 gi|315266225|gb|ADT93078.1| transcriptional regulator, LuxR family [Shewanella baltica OS678]
          Length = 221

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
              ++ +      Q +    E+     +  + LT RE + +Q    G  ++EIA +L +S
Sbjct: 124 DRTLLSKVFRRVVQKLDGNNEMLSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCIS 183

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228
            HTV A++ S   K  + NR++ +  A
Sbjct: 184 EHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|89900279|ref|YP_522750.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345016|gb|ABD69219.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 214

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
            +      F        +E   A    I+D      +   A  +L+ RE   L     G+
Sbjct: 102 AWDFLEKPFQDNELVDRVEQALAAASAISDTDLEVYRLKQALTSLSPREREVLDELIRGH 161

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            ++ IA+ LG++  TV  +      K+   +   A+  A + G
Sbjct: 162 YNKTIADHLGITPRTVEFHRSHIFEKMGVSS---AVELAHKLG 201


>gi|170696363|ref|ZP_02887492.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170138691|gb|EDT06890.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 274

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 26/174 (14%)

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
             L+  Y D  +      + P     + +E V     + +       +  A     +   
Sbjct: 45  RHLLSHYPDLRIAVLTDRISPKAVSELMDEGVRGVVPRETDPCL---IVRAFEMVLLGGH 101

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERETS 180
           +  +G +        L  +  I                 +K         +  L+ R+  
Sbjct: 102 YVPSGALPL---KPPLPADTAIR-------------PFDEKSPPPRRVRLSNGLSPRQQQ 145

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++    G T++ IA  LG+S  TV  +L S   +L A NR  A+  A+  G++
Sbjct: 146 IMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 197


>gi|110637589|ref|YP_677796.1| response regulator, positive activator of uhpT transcription
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110280270|gb|ABG58456.1| response regulator, positive activator of uhpT transcription
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 318

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           NLT RE   + L    YT +EIAE+L +S  TV  ++ +   K     + + +AK
Sbjct: 256 NLTAREREIIHLLAKAYTYKEIAEELFISDRTVAKHISNIYSKTGVSQKSELLAK 310


>gi|53711893|ref|YP_097885.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46]
 gi|52214758|dbj|BAD47351.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46]
          Length = 198

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            I++ H   +       ++     +    L+ RE   L L   G  ++EIA+KL + + T
Sbjct: 104 DILKLHQHAHHDGYPVKDMPPTPPTTGHELSAREIEVLVLITKGLINKEIADKLNIGLTT 163

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           V  +  + T KL   +       A+  GY+
Sbjct: 164 VITHRKNITEKLGIKSVSGLTIYAVMNGYV 193


>gi|88854577|ref|ZP_01129244.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88816385|gb|EAR26240.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 206

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +  +   +L++RE   L     G ++  +A ++ +S  T+ ++L     KLD  +R
Sbjct: 133 RLLDRMRAPQISLSKREIEVLDKVAHGKSNAVVASEIFVSETTIKSHLVHIFSKLDVSSR 192

Query: 222 IQAIAKAIRFGYI 234
             A+++A   G +
Sbjct: 193 TAAVSRARELGVL 205


>gi|298247333|ref|ZP_06971138.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297549992|gb|EFH83858.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1044

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 171  ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            +  L+ +E   L+L   G ++ EIA +L +S++TV   L +   KL+  NR++A   A +
Sbjct: 981  SEALSSQEARVLRLLVAGRSNPEIANELVVSINTVKTQLQNIYRKLNVSNRVEASEAARQ 1040

Query: 231  FGYI 234
               +
Sbjct: 1041 LKLV 1044


>gi|269469283|gb|EEZ80796.1| hypothetical protein Sup05_1368 [uncultured SUP05 cluster
           bacterium]
          Length = 209

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 155 QVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            V+   L      S  +   LT RE         G +++ IA +LG+S  TV  ++ S  
Sbjct: 128 HVLAKVLRNELTESEPSFEVLTNREKEVACQVSIGSSNKVIARELGISDGTVKLHVKSIL 187

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KL   +R++        GY
Sbjct: 188 KKLSLSSRVEVAVMVTEKGY 207


>gi|254427282|ref|ZP_05040989.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196193451|gb|EDX88410.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 301

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 27/56 (48%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           T RE   L     G T+ EIA+ L LS  TVN +L     KL   NR  A A  I+
Sbjct: 240 THREAQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVENRTAAAAMVIQ 295


>gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
          Length = 309

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 21/219 (9%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI------PNILIETYGDD 75
             +   ++A      T    +D   R ++   L N                 L+   GD 
Sbjct: 97  EHVVRALEAGGVDYLTKPINID-ELRARIRVHLSNARSAQSARVALDAAGRHLLAVRGDG 155

Query: 76  FLFH----FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            +          +            V     +     E       G  F ++        
Sbjct: 156 TVRWSTPQATRLVNAATGSDDGLAFVAGRIAEWMRERENSPGERQG-TFTLQRASQTGLQ 214

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           + +     + ANE +            + L    +       LT+RE+  L     G ++
Sbjct: 215 ISYLGA--IGANEYLFRLTAENGMSDDETLRQHFR-------LTQRESEVLLWIAKGKSN 265

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            +I E LGLS  TV  +L    VKL   NR  A  KA +
Sbjct: 266 RDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQ 304


>gi|158313275|ref|YP_001505783.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158108680|gb|ABW10877.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 218

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             ++V+  F       ++    LTERE   L L  +G+ +  IA  L L+  TV   + +
Sbjct: 135 VAHRVLRTFTSP-PAENAPFPELTEREREVLSLLANGWPNSRIARHLQLTPKTVANNVSN 193

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL A +R  AI +A R G 
Sbjct: 194 ILAKLHAPDRTAAILRARRAGL 215


>gi|332670605|ref|YP_004453613.1| LuxR family ATP-dependent transcriptional regulator [Cellulomonas
           fimi ATCC 484]
 gi|332339643|gb|AEE46226.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Cellulomonas fimi ATCC 484]
          Length = 919

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 5/148 (3%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
           ++   + E            R         G+  P       +                 
Sbjct: 776 LVASGVAEAAREPRRADALARAAFDEAAAEGVVLPFVRPAPPSVRQPVAR-----VAGAR 830

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
            +A  A  + +        + +  A  LT+RE + L       ++ EIA+ L +SV+TV 
Sbjct: 831 TDALAASVRELIGPQAPVAEPAPLAGALTDRELAVLTALATMQSNAEIADDLFVSVNTVK 890

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A+L S   KL+  +R  A+ +    G +
Sbjct: 891 AHLKSLFRKLEVGSRRAAVRRGRELGLL 918


>gi|311108335|ref|YP_003981188.1| sensory box protein 10 [Achromobacter xylosoxidans A8]
 gi|310763024|gb|ADP18473.1| sensory box protein 10 [Achromobacter xylosoxidans A8]
          Length = 497

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGL 200
           + +       VI    +L +   +         LT RE   L L   G+  + IA +L L
Sbjct: 390 MQDTSWFSRSVIEKLAQLREPAPATRDVAELAQLTSREREVLGLMCQGHDDDSIARQLKL 449

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           S +TV  ++ +   K+    R  AI  A   G 
Sbjct: 450 SRNTVRNHVATIYSKIGVHRRSAAIVWARDRGI 482


>gi|296130380|ref|YP_003637630.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022195|gb|ADG75431.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 217

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 4/124 (3%)

Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
            +     +   +      +  V       + +  +      A      D      +    
Sbjct: 98  RVGARGYVTKAIDPTALSDAVVRVAGGDAVFSPRLAGFVLDAFGAAAGDVATGDDE---- 153

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L+ RE   ++L   G+T  E+A +L +S+ TV  ++ +   KL   NR +    A  
Sbjct: 154 LDRLSAREREVMRLIARGFTYREVAGELFISIKTVETHVSAVLRKLQLSNRNELTRWAAA 213

Query: 231 FGYI 234
              +
Sbjct: 214 RRLL 217


>gi|149375232|ref|ZP_01893004.1| ATP-dependent transcriptional regulator [Marinobacter algicola
           DG893]
 gi|149360596|gb|EDM49048.1| ATP-dependent transcriptional regulator [Marinobacter algicola
           DG893]
          Length = 907

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   L L   G  +++IA  +G++  TV A++ +   KL   +R +A+AKA   
Sbjct: 844 EPLSQRELEVLDLINQGLANKDIANTMGVAPTTVKAHIRNLYGKLAVGSRTEALAKAREL 903

Query: 232 GYI 234
             +
Sbjct: 904 RLL 906


>gi|110680752|ref|YP_683759.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456868|gb|ABG33073.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
          Length = 304

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDG 188
             T  F      +     G   +++         R S     A +LT RE   L     G
Sbjct: 198 SQTRRFSCEDFTLDFLGGGPSGELLLQIARTSNMRPSTYLETAFDLTPREAEVLYWLSMG 257

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            T+ +IA+ L LS  T+N +L     K+   NR  A   A R 
Sbjct: 258 KTNRDIAQILSLSSRTINKHLEQVFQKMGVDNRTAAAVAADRL 300


>gi|15896192|ref|NP_349541.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025991|gb|AAK80881.1|AE007791_1 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510347|gb|ADZ21983.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 215

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+R+   +   G G +++EIAEK  ++  TV  ++     KL+  +R Q    A++  
Sbjct: 154 KLTDRQIEIIIAIGSGLSNKEIAEKQYVTEGTVKNHITEILSKLEMRDRTQIAIFALKNE 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|87122320|ref|ZP_01078202.1| transcriptional regulatory protein degu [Marinomonas sp. MED121]
 gi|86162463|gb|EAQ63746.1| transcriptional regulatory protein degu [Marinomonas sp. MED121]
          Length = 206

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE + L+    G  ++ IA  L +SV TV  +  +   KL   +       AI  
Sbjct: 144 EELTKRELAVLKELASGAANKTIANNLSISVRTVETHRQNLKQKLGIHSAAGLTKYAIEH 203

Query: 232 GYI 234
             I
Sbjct: 204 KLI 206


>gi|134292526|ref|YP_001116262.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134135683|gb|ABO56797.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 214

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIHASATASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211


>gi|302539479|ref|ZP_07291821.1| predicted protein [Streptomyces sp. C]
 gi|302448374|gb|EFL20190.1| predicted protein [Streptomyces sp. C]
          Length = 92

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           L+ERE     L G+G T+++IA +L +SV TV  Y+     KL   +R Q   
Sbjct: 31  LSERERVVTGLVGEGRTNQQIAARLDISVKTVETYMSRIFKKLGMNSRTQVAH 83


>gi|300697452|ref|YP_003748113.1| Hrp family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074176|emb|CBJ53721.1| transcription regulator for hrp genes expression [Ralstonia
           solanacearum CFBP2957]
          Length = 197

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +    + + +   L  E      G   +             +    LT R+   L+ A  
Sbjct: 84  EAAGELPSGQLQPLTLEQTYAMLGRILEARRHGCAPRPDTGARLSALTPRQHDILREAAH 143

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G ++ EIA+ L +SV TV +++    ++L+A NR +  A 
Sbjct: 144 GKSNVEIAQTLHISVETVKSHVRQILMRLEARNRTELAAI 183


>gi|299137142|ref|ZP_07030324.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600547|gb|EFI56703.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 210

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 36/89 (40%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
             I A     +  +          +    LT  E S L+L   G  +++IA++L +S  T
Sbjct: 119 DAIRAVFTGRKTFSIEASSELAEHATDEALTAGEISVLRLIAAGNANKQIADQLSISEDT 178

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V   + +   KL A +R  A    I+ G 
Sbjct: 179 VKGRVKNILSKLGANDRAHAATIGIKRGI 207


>gi|254254816|ref|ZP_04948133.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
 gi|124899461|gb|EAY71304.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
          Length = 214

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211


>gi|15802349|ref|NP_288375.1| response regulator [Escherichia coli O157:H7 EDL933]
 gi|15831906|ref|NP_310679.1| response regulator [Escherichia coli O157:H7 str. Sakai]
 gi|26248179|ref|NP_754219.1| response regulator [Escherichia coli CFT073]
 gi|82776406|ref|YP_402755.1| response regulator [Shigella dysenteriae Sd197]
 gi|91211133|ref|YP_541119.1| response regulator [Escherichia coli UTI89]
 gi|157161385|ref|YP_001458703.1| response regulator [Escherichia coli HS]
 gi|168751837|ref|ZP_02776859.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4113]
 gi|168758223|ref|ZP_02783230.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4401]
 gi|168777336|ref|ZP_02802343.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4196]
 gi|168790332|ref|ZP_02815339.1| response regulator UvrY [Escherichia coli O157:H7 str. EC869]
 gi|191173273|ref|ZP_03034803.1| response regulator UvrY [Escherichia coli F11]
 gi|195939217|ref|ZP_03084599.1| response regulator [Escherichia coli O157:H7 str. EC4024]
 gi|208810653|ref|ZP_03252529.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4206]
 gi|208816650|ref|ZP_03257770.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4045]
 gi|208819040|ref|ZP_03259360.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4042]
 gi|209396376|ref|YP_002271026.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4115]
 gi|215487119|ref|YP_002329550.1| response regulator [Escherichia coli O127:H6 str. E2348/69]
 gi|217329053|ref|ZP_03445134.1| response regulator UvrY [Escherichia coli O157:H7 str. TW14588]
 gi|218558772|ref|YP_002391685.1| response regulator [Escherichia coli S88]
 gi|218689907|ref|YP_002398119.1| response regulator [Escherichia coli ED1a]
 gi|218699522|ref|YP_002407151.1| response regulator [Escherichia coli IAI39]
 gi|218705409|ref|YP_002412928.1| response regulator [Escherichia coli UMN026]
 gi|227885660|ref|ZP_04003465.1| response regulator [Escherichia coli 83972]
 gi|237705869|ref|ZP_04536350.1| response regulator UvrY [Escherichia sp. 3_2_53FAA]
 gi|254793564|ref|YP_003078401.1| response regulator [Escherichia coli O157:H7 str. TW14359]
 gi|260855894|ref|YP_003229785.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O26:H11 str. 11368]
 gi|261227592|ref|ZP_05941873.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255822|ref|ZP_05948355.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O157:H7 str. FRIK966]
 gi|291283091|ref|YP_003499909.1| Response regulator uvrY [Escherichia coli O55:H7 str. CB9615]
 gi|293405400|ref|ZP_06649392.1| response regulator [Escherichia coli FVEC1412]
 gi|293410273|ref|ZP_06653849.1| two component transcriptional [Escherichia coli B354]
 gi|293415223|ref|ZP_06657866.1| response regulator uvrY [Escherichia coli B185]
 gi|298381044|ref|ZP_06990643.1| two-component system [Escherichia coli FVEC1302]
 gi|300899166|ref|ZP_07117445.1| response regulator UvrY [Escherichia coli MS 198-1]
 gi|300904799|ref|ZP_07122627.1| response regulator UvrY [Escherichia coli MS 84-1]
 gi|300928944|ref|ZP_07144448.1| response regulator UvrY [Escherichia coli MS 187-1]
 gi|300935888|ref|ZP_07150845.1| response regulator UvrY [Escherichia coli MS 21-1]
 gi|300951537|ref|ZP_07165371.1| response regulator UvrY [Escherichia coli MS 116-1]
 gi|300956572|ref|ZP_07168852.1| response regulator UvrY [Escherichia coli MS 175-1]
 gi|300982241|ref|ZP_07175953.1| response regulator UvrY [Escherichia coli MS 200-1]
 gi|300993976|ref|ZP_07180623.1| response regulator UvrY [Escherichia coli MS 45-1]
 gi|301018237|ref|ZP_07182752.1| response regulator UvrY [Escherichia coli MS 69-1]
 gi|301050733|ref|ZP_07197591.1| response regulator UvrY [Escherichia coli MS 185-1]
 gi|301305254|ref|ZP_07211351.1| response regulator UvrY [Escherichia coli MS 124-1]
 gi|306814262|ref|ZP_07448428.1| response regulator [Escherichia coli NC101]
 gi|312967115|ref|ZP_07781333.1| response regulator [Escherichia coli 2362-75]
 gi|331647506|ref|ZP_08348598.1| response regulator UvrY [Escherichia coli M605]
 gi|331657959|ref|ZP_08358921.1| response regulator UvrY [Escherichia coli TA206]
 gi|331673432|ref|ZP_08374200.1| response regulator UvrY [Escherichia coli TA280]
 gi|54039838|sp|P66798|UVRY_ECO57 RecName: Full=Response regulator uvrY
 gi|54042601|sp|P66797|UVRY_ECOL6 RecName: Full=Response regulator uvrY
 gi|12516012|gb|AAG56929.1|AE005414_6 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|26108583|gb|AAN80786.1|AE016762_39 UvrY protein [Escherichia coli CFT073]
 gi|13362120|dbj|BAB36075.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|81240554|gb|ABB61264.1| putative 2-component transcriptional regulator [Shigella
           dysenteriae Sd197]
 gi|91072707|gb|ABE07588.1| putative 2-component transcriptional regulator [Escherichia coli
           UTI89]
 gi|157067065|gb|ABV06320.1| response regulator UvrY [Escherichia coli HS]
 gi|187767375|gb|EDU31219.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4196]
 gi|188014180|gb|EDU52302.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4113]
 gi|189354916|gb|EDU73335.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4401]
 gi|189370219|gb|EDU88635.1| response regulator UvrY [Escherichia coli O157:H7 str. EC869]
 gi|190906390|gb|EDV65999.1| response regulator UvrY [Escherichia coli F11]
 gi|208725169|gb|EDZ74876.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4206]
 gi|208730993|gb|EDZ79682.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4045]
 gi|208739163|gb|EDZ86845.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4042]
 gi|209157776|gb|ACI35209.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4115]
 gi|209767048|gb|ACI81836.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209767050|gb|ACI81837.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209767052|gb|ACI81838.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209767054|gb|ACI81839.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209767056|gb|ACI81840.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|215265191|emb|CAS09580.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217318400|gb|EEC26827.1| response regulator UvrY [Escherichia coli O157:H7 str. TW14588]
 gi|218365541|emb|CAR03268.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli S88]
 gi|218369508|emb|CAR17275.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli IAI39]
 gi|218427471|emb|CAR08367.2| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli ED1a]
 gi|218432506|emb|CAR13399.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli UMN026]
 gi|222033655|emb|CAP76396.1| Response regulator uvrY [Escherichia coli LF82]
 gi|226900626|gb|EEH86885.1| response regulator UvrY [Escherichia sp. 3_2_53FAA]
 gi|227837233|gb|EEJ47699.1| response regulator [Escherichia coli 83972]
 gi|254592964|gb|ACT72325.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli O157:H7 str. TW14359]
 gi|257754543|dbj|BAI26045.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O26:H11 str. 11368]
 gi|281178976|dbj|BAI55306.1| two-component response regulator [Escherichia coli SE15]
 gi|284921827|emb|CBG34900.1| response regulator [Escherichia coli 042]
 gi|290762964|gb|ADD56925.1| Response regulator uvrY [Escherichia coli O55:H7 str. CB9615]
 gi|291427608|gb|EFF00635.1| response regulator [Escherichia coli FVEC1412]
 gi|291432871|gb|EFF05850.1| response regulator uvrY [Escherichia coli B185]
 gi|291470741|gb|EFF13225.1| two component transcriptional [Escherichia coli B354]
 gi|294489952|gb|ADE88708.1| response regulator UvrY [Escherichia coli IHE3034]
 gi|298278486|gb|EFI20000.1| two-component system [Escherichia coli FVEC1302]
 gi|300297550|gb|EFJ53935.1| response regulator UvrY [Escherichia coli MS 185-1]
 gi|300307311|gb|EFJ61831.1| response regulator UvrY [Escherichia coli MS 200-1]
 gi|300316619|gb|EFJ66403.1| response regulator UvrY [Escherichia coli MS 175-1]
 gi|300357225|gb|EFJ73095.1| response regulator UvrY [Escherichia coli MS 198-1]
 gi|300399824|gb|EFJ83362.1| response regulator UvrY [Escherichia coli MS 69-1]
 gi|300403313|gb|EFJ86851.1| response regulator UvrY [Escherichia coli MS 84-1]
 gi|300406422|gb|EFJ89960.1| response regulator UvrY [Escherichia coli MS 45-1]
 gi|300449212|gb|EFK12832.1| response regulator UvrY [Escherichia coli MS 116-1]
 gi|300458938|gb|EFK22431.1| response regulator UvrY [Escherichia coli MS 21-1]
 gi|300463098|gb|EFK26591.1| response regulator UvrY [Escherichia coli MS 187-1]
 gi|300839460|gb|EFK67220.1| response regulator UvrY [Escherichia coli MS 124-1]
 gi|305852421|gb|EFM52872.1| response regulator [Escherichia coli NC101]
 gi|307553927|gb|ADN46702.1| response regulator UvrY [Escherichia coli ABU 83972]
 gi|307626609|gb|ADN70913.1| response regulator [Escherichia coli UM146]
 gi|312288579|gb|EFR16481.1| response regulator [Escherichia coli 2362-75]
 gi|312946506|gb|ADR27333.1| response regulator [Escherichia coli O83:H1 str. NRG 857C]
 gi|315257256|gb|EFU37224.1| response regulator UvrY [Escherichia coli MS 85-1]
 gi|315286613|gb|EFU46046.1| response regulator UvrY [Escherichia coli MS 110-3]
 gi|315290294|gb|EFU49672.1| response regulator UvrY [Escherichia coli MS 153-1]
 gi|315296529|gb|EFU55826.1| response regulator UvrY [Escherichia coli MS 16-3]
 gi|320191887|gb|EFW66534.1| response regulator [Escherichia coli O157:H7 str. EC1212]
 gi|320194374|gb|EFW69005.1| response regulator [Escherichia coli WV_060327]
 gi|320641761|gb|EFX11149.1| response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320647121|gb|EFX15954.1| response regulator [Escherichia coli O157:H- str. 493-89]
 gi|320652404|gb|EFX20702.1| response regulator [Escherichia coli O157:H- str. H 2687]
 gi|320658006|gb|EFX25768.1| response regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658578|gb|EFX26272.1| response regulator [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668476|gb|EFX35303.1| response regulator [Escherichia coli O157:H7 str. LSU-61]
 gi|323152755|gb|EFZ39027.1| response regulator [Escherichia coli EPECa14]
 gi|323940423|gb|EGB36614.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323952409|gb|EGB48282.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323956311|gb|EGB52054.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323968330|gb|EGB63737.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|324007282|gb|EGB76501.1| response regulator UvrY [Escherichia coli MS 57-2]
 gi|324013557|gb|EGB82776.1| response regulator UvrY [Escherichia coli MS 60-1]
 gi|326342320|gb|EGD66101.1| response regulator [Escherichia coli O157:H7 str. 1044]
 gi|326344827|gb|EGD68574.1| response regulator [Escherichia coli O157:H7 str. 1125]
 gi|327253043|gb|EGE64697.1| response regulator [Escherichia coli STEC_7v]
 gi|330911721|gb|EGH40231.1| barA-associated response regulator UvrY ( GacA SirA) [Escherichia
           coli AA86]
 gi|331043230|gb|EGI15368.1| response regulator UvrY [Escherichia coli M605]
 gi|331056207|gb|EGI28216.1| response regulator UvrY [Escherichia coli TA206]
 gi|331069630|gb|EGI41017.1| response regulator UvrY [Escherichia coli TA280]
 gi|332089647|gb|EGI94749.1| response regulator [Shigella boydii 5216-82]
          Length = 218

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|323961963|gb|EGB57562.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
          Length = 218

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|310643754|ref|YP_003948512.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309248704|gb|ADO58271.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 596

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G   + I+EKL LS  TV  Y  +   KL   NR +A+ KA   G
Sbjct: 534 GLTKRELEVLNLLSQGNRYKTISEKLYLSNGTVRNYASTLYDKLGVNNREEAVQKARDTG 593

Query: 233 YI 234
            +
Sbjct: 594 LL 595


>gi|289642641|ref|ZP_06474782.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507550|gb|EFD28508.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 228

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 15/159 (9%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE---------- 137
               +       S   +   +  G      +              I              
Sbjct: 68  DVAILDARLPDGSGIDVCRDIRSGTSEVPCLILTSHDDDEALFAAIMAGAAGYVLKQIRG 127

Query: 138 -FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL----TERETSCLQLAGDGYTSE 192
             L+ A   +          +T  +    +  +    L    +ERE   L L  +G T+ 
Sbjct: 128 NDLIGAVRTVASGQSMLDPAVTQRVLTRLRDGAPEDRLLSTLSERERQILGLIAEGLTNR 187

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +IA ++ L+  TV   + S   KL   +R QA   A + 
Sbjct: 188 QIASRIHLAEKTVKNNVSSILEKLGLTSRTQAAVFATKL 226


>gi|257095255|ref|YP_003168896.1| two component LuxR family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047779|gb|ACV36967.1| two component transcriptional regulator, LuxR family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 216

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLAN--EVIIEAHGACY 154
           +   R+       A + + V           + G + F ++   +    + I        
Sbjct: 70  EAIRRIRSRDPQAAILVYTVHNSRVLLERALEAGALGFVTKGSDIDTLLQAIKRIASRES 129

Query: 155 QVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
            V  D L     R   A       LT+RE    +L  +G+   E A+ L LS  TV+ + 
Sbjct: 130 FVSPDMLPALLDRHFPAGGVSFDRLTQREFQVFKLLSEGHALPECADILNLSSKTVSNHF 189

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL   +  +    AIR G +
Sbjct: 190 TQIRAKLGVDSPAEMARIAIRQGLV 214


>gi|149187165|ref|ZP_01865463.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148838701|gb|EDL55640.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 225

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            LT RE   ++L G+G ++ +IAE L +S +TV A+L +   K+   NR+QA+  A
Sbjct: 160 KLTRREQEIIKLLGNGASNTQIAETLFVSENTVKAHLHNTFKKIKVNNRLQALIWA 215


>gi|150375868|ref|YP_001312464.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150030415|gb|ABR62531.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 264

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 48/212 (22%), Gaps = 27/212 (12%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           I        R+    +   Y  +           + D F  ++       I         
Sbjct: 44  ITVTRYSATRRPEFIKHRGYSDEMVARYLDTYYVF-DPFYAYWRLTRRAGIVPLKSLADG 102

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
               G+              +   +  G      +       M ++  +    G    V 
Sbjct: 103 APKRGRYIAEFLAQSEICDEVGILLEDGDDWCLGIFLDRSTSMFSDGEVAALSGRFP-VF 161

Query: 158 TDFLELFKKRSSA-------------------------ARNLTERETSCLQLAGDGYTSE 192
                   +                                LT RE   + L   G+ + 
Sbjct: 162 EALHATDTRTRDPNLRRTSMPEAMGEAPVNAVQASLILWPGLTARERELVDLILQGHPNA 221

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            IA +LG++  TV  +      KLD     + 
Sbjct: 222 TIASRLGIAPGTVKNHRARIYEKLDITTEREL 253


>gi|127513542|ref|YP_001094739.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126638837|gb|ABO24480.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 222

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           SS   +L+ R+   L +  DG  +++IA +LGLS  T+ A+  +  +KL    R QA+ 
Sbjct: 145 SSKIASLSPRQHKILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRTQAVI 203


>gi|319780810|ref|YP_004140286.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166698|gb|ADV10236.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 268

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 60/236 (25%), Gaps = 30/236 (12%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              +  ++  ++  +  ++    A   P                  +         D F 
Sbjct: 27  QALVEWLRQHVRFDHCVIFGYRGASRPPL--LFETFSPTESHVFVALYQEGPYLL-DPFH 83

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF--- 134
                      W+  +       + +              + F V L       +     
Sbjct: 84  HAAVERKEGF-WRMRELAPDRFYASEYFRSYYSQTRLAEEVGFFVPLPGKDALVLSLMRL 142

Query: 135 --TSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAAR----------------- 172
             +  F      ++ +   A     ++    L   +   +                    
Sbjct: 143 RASGPFGTADARLLRDMAPAVISFIRLRWPALPADETAEAKQDETAAMVNEFDRAHIWQS 202

Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +LT RE   + L   G+++E IA  + +   TV  +  +   KL   ++    A+
Sbjct: 203 LSLTPREKHVVDLVLQGHSTESIARAMRIVPGTVKVHRRNIYRKLKIKSQAGLFAR 258


>gi|314987054|gb|EFT31146.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
          Length = 218

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----------L 174
              +G+++  +    L + +   A G      +    L         N           L
Sbjct: 99  AGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPPLPNDPKAADKRLSVL 158

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   L     G T+ EIA+ L ++  TV  ++G    KL+  +R+  +  A   G +
Sbjct: 159 TDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL 218


>gi|237800190|ref|ZP_04588651.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023047|gb|EGI03104.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 135

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 62  AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 121

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 122 AALLLQQL 129


>gi|89894842|ref|YP_518329.1| hypothetical protein DSY2096 [Desulfitobacterium hafniense Y51]
 gi|219669285|ref|YP_002459720.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|89334290|dbj|BAE83885.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539545|gb|ACL21284.1| transcriptional regulator, LuxR family [Desulfitobacterium
           hafniense DCB-2]
          Length = 74

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +NLT RE    +L   GYT +EIA+ L +S  TV  +L +   KL   + ++ I    R
Sbjct: 14  KNLTYREKEISKLRIQGYTRKEIADILNISHFTVKKHLENIYKKLGIASVVELIKLVYR 72


>gi|13474731|ref|NP_106300.1| two-component system, response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14025486|dbj|BAB52086.1| two-component system, response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 219

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + LT ++T  L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+    
Sbjct: 149 RLQALTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLS 208

Query: 230 RFG 232
           + G
Sbjct: 209 KIG 211


>gi|222098587|ref|YP_002532645.1| two-component response regulator [Bacillus cereus Q1]
 gi|221242646|gb|ACM15356.1| two-component response regulator [Bacillus cereus Q1]
          Length = 217

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  KR+S+   +T++E   L+    G ++++IA++L +S   V   L     K    +R 
Sbjct: 142 LDTKRASSHVTITQKELEILESIAKGKSNKQIADELYMSSRAVEYNLTKLFKKFKVSSRS 201

Query: 223 QAIAKAIRFGYI 234
           +A+A+A+R G I
Sbjct: 202 EALAEAVRKGII 213


>gi|254284313|ref|ZP_04959281.1| transcriptional regulator, LuxR family protein [gamma
           proteobacterium NOR51-B]
 gi|219680516|gb|EED36865.1| transcriptional regulator, LuxR family protein [gamma
           proteobacterium NOR51-B]
          Length = 248

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 57/245 (23%), Gaps = 44/245 (17%)

Query: 18  SPRLHLIQNRIKARNFAL--YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75
              L  ++  I A +       ++         Q                        D 
Sbjct: 6   QEALTFMERAIGASSSVYGHLRLSQQQVHISEGQERGVPAGAMARWCA-----GYHRQDP 60

Query: 76  FLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
           F+       ++    +I  S         + +           +  +   +R        
Sbjct: 61  FMRSYLTCLSTSPRNVIVSSEVISHHDYVATRFYNEFLKPQSIYHVMIVGLRPS--GRVP 118

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------------------- 172
                               A   ++   L    +R  A                     
Sbjct: 119 FGIIGLHRPAEERGFSRLEIAKADLMAPCLRGAVERIQARELLSQHDPLQPGGVDVVDTD 178

Query: 173 ------------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                        L+ RE   ++L   G +S  IA++L +S  TVN +L S   K    N
Sbjct: 179 SSITMERRMKRFGLSRREKQVVELLRQGLSSLHIADQLNISARTVNNHLRSVYDKCGVHN 238

Query: 221 RIQAI 225
           R   I
Sbjct: 239 RTALI 243


>gi|330954288|gb|EGH54548.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae Cit 7]
          Length = 190

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +   +A   LT R+   L L   G T++EIA+ LG+S  TV  ++ S    L    R 
Sbjct: 119 FNESAVNALSPLTARQKQVLGLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRA 178

Query: 223 QAIA 226
            A A
Sbjct: 179 AAAA 182


>gi|312197458|ref|YP_004017519.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228794|gb|ADP81649.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 206

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 36/85 (42%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                 A  Q +   L     +      L  RE   L L  +G T+ +IA ++ LS  TV
Sbjct: 119 RSLLDPAVTQRVLTRLREGPTQDPKLAALGTREREILHLVAEGLTNRQIASRIHLSEKTV 178

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIR 230
             Y+ S  VKL+  +R QA   A R
Sbjct: 179 KNYVSSILVKLELTSRTQAAVFAAR 203


>gi|302867540|ref|YP_003836177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506060|ref|YP_004084947.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570399|gb|ADL46601.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412679|gb|ADU10796.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 215

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +++         R      L+ERE   ++    G T+ EI  +L +S+ TV +++ +   
Sbjct: 135 RLLRHLTPPAPPRDERRPALSEREIEVVREIARGRTNLEIGAELFISLSTVKSHVSAVQT 194

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   NR +    A     +
Sbjct: 195 KLGLRNRTEIAVWAWEHRVV 214


>gi|206578416|ref|YP_002237711.1| response regulator UvrY [Klebsiella pneumoniae 342]
 gi|290508771|ref|ZP_06548142.1| response regulator [Klebsiella sp. 1_1_55]
 gi|206567474|gb|ACI09250.1| response regulator UvrY [Klebsiella pneumoniae 342]
 gi|289778165|gb|EFD86162.1| response regulator [Klebsiella sp. 1_1_55]
          Length = 218

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           A+     A     Q+    +E  K  S  A +L+ERE   + +   G    EI+E+L LS
Sbjct: 119 ASGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLS 177

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             TVN+Y      KL+    ++    AIR G 
Sbjct: 178 PKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|217971562|ref|YP_002356313.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217496697|gb|ACK44890.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 198

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L ++E   L+LA +G ++ +IAE L ++  TV  YL  A  KL+A NRI A   A + 
Sbjct: 136 DPLNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQK 195

Query: 232 GYI 234
           G++
Sbjct: 196 GWL 198


>gi|134101945|ref|YP_001107606.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|134101947|ref|YP_001107608.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914568|emb|CAM04681.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914570|emb|CAM04683.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 150

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           +   S   ++  +++ E       +  + L     R   A  LT RE   L+L  DG  +
Sbjct: 51  LAAASGGGVMPPDLLGELLKQVDYLQREVLT---PRGLNASGLTTREIDVLRLMADGLDT 107

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA+KL  S  TV   +   T +L+  NR  A+A A+R G I
Sbjct: 108 AEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGVI 150


>gi|160873477|ref|YP_001552793.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|304411702|ref|ZP_07393314.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307306246|ref|ZP_07585991.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|160858999|gb|ABX47533.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|304349890|gb|EFM14296.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306911119|gb|EFN41546.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|315265706|gb|ADT92559.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 198

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L ++E   L+LA +G ++ +IAE L ++  TV  YL  A  KL+A NRI A   A + 
Sbjct: 136 DPLNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQK 195

Query: 232 GYI 234
           G++
Sbjct: 196 GWL 198


>gi|325001931|ref|ZP_08123043.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 217

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 154 YQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             V+          +      +L+ +E   L+L  DG T+ +I  +L L+  TV  Y+ S
Sbjct: 133 AAVLERLRRGDTATQSDPRYESLSPQEQRILELIADGLTNRQIGGELHLAEKTVKNYVSS 192

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KL    R +A   A+  
Sbjct: 193 ILHKLGYARRTEAAVYAVER 212


>gi|319948162|ref|ZP_08022323.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea
           P4]
 gi|319438174|gb|EFV93133.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea
           P4]
          Length = 294

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
              +V  E    C +++                L+ RE   L     G T+ E A  +G+
Sbjct: 206 EDPDVRAELERICAEMV------SPPPEMPTARLSRRELDVLACVAQGKTNIETAADMGI 259

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
              TV +YL S   KLDA  R +A+  A R G
Sbjct: 260 GAETVKSYLRSVMRKLDAHTRFEAVNAARRMG 291


>gi|293397213|ref|ZP_06641487.1| LuxR family two component transcriptional regulator [Serratia
           odorifera DSM 4582]
 gi|291420684|gb|EFE93939.1| LuxR family two component transcriptional regulator [Serratia
           odorifera DSM 4582]
          Length = 201

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
             I+A           L   +  ++ +  LT +E   L L   G ++ +IA  L +S  T
Sbjct: 113 QAIDAVLGGASGFPADLPTDETAATDSPQLTPKELQVLGLLSKGLSNLQIAAMLNISNKT 172

Query: 205 VNAYLGSATVKLDAVNRIQAIA 226
           V+ +  +   K  A N ++ +A
Sbjct: 173 VSTHKKNILRKTGASNLLELVA 194


>gi|186686538|ref|YP_001869734.1| LuxR family GAF modulated transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186468990|gb|ACC84791.1| GAF modulated transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 226

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 62/221 (28%), Gaps = 30/221 (13%)

Query: 15  QELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           QEL   L   I      +N+ +Y ++             ++        +   +      
Sbjct: 21  QELRLALTDKIGEHFGVQNWGIYLLDDRPTTQ------IDVQGIPAVCLESNPVGRY--- 71

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +         ++      +     S    V           +  P+       G + 
Sbjct: 72  --VVERHAPAHEQLLLSPGDWKHFCSRSDHEHV-----------MTGPIVCDGRLVGTLN 118

Query: 134 FTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAG 186
              +          + +    C  +      L   +   +       LT RE    +L  
Sbjct: 119 LARDKGNPAFNGNDLADLSALCIHLSAKMATLRTTKPQISNSLLVNPLTARELEIAELVA 178

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            G T+ EI EKL ++ ++V   L     KL    R + +AK
Sbjct: 179 QGLTNSEIGEKLWITQNSVKQALKRMFRKLKVSARAEMVAK 219


>gi|163751601|ref|ZP_02158822.1| response regulator [Shewanella benthica KT99]
 gi|161328513|gb|EDP99667.1| response regulator [Shewanella benthica KT99]
          Length = 214

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFL--ELFKKRSSAARNLTERETS 180
              +GY+   +    +   +   AH       ++       +      S  ++L+ERE  
Sbjct: 96  AGASGYLTKGATPPEVLQAIRQVAHGQRYLSPEIAQQMALSQFSSSDESPFQSLSERELQ 155

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + +  +G    EIA +L LS  TVN+Y      KL     ++    AIR+  I
Sbjct: 156 IMMMITNGEKVSEIAAQLNLSPKTVNSYRYRLFAKLGINGDVELTRLAIRYKMI 209


>gi|153852992|ref|ZP_01994429.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814]
 gi|149754634|gb|EDM64565.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814]
          Length = 223

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
              NLT+ E   +   G G +++EIAE L LS  TV  YL     KL+  +R Q    A+
Sbjct: 153 RTENLTKTEWKIINEVGRGSSNKEIAENLNLSEGTVRNYLSGILNKLEFRDRTQLAIWAV 212

Query: 230 RF 231
           + 
Sbjct: 213 QN 214


>gi|119476963|ref|ZP_01617244.1| Two Component Transcriptional Regulator, LuxR family protein
           [marine gamma proteobacterium HTCC2143]
 gi|119449770|gb|EAW31007.1| Two Component Transcriptional Regulator, LuxR family protein
           [marine gamma proteobacterium HTCC2143]
          Length = 222

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+R+   L+L   G++++ IA    LS +TV  ++ +    L   NR Q    A + G 
Sbjct: 155 LTDRQLDILRLVAKGHSNKGIARHSNLSENTVKVHVSAILKALGLSNRTQIGLLAQKIGI 214

Query: 234 I 234
           +
Sbjct: 215 L 215


>gi|107025539|ref|YP_623050.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116693279|ref|YP_838812.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|170737450|ref|YP_001778710.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|105894913|gb|ABF78077.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
 gi|116651279|gb|ABK11919.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
 gi|169819638|gb|ACA94220.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 214

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 10/127 (7%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKKRSS 169
           G+              +   +   L         + +++A                + + 
Sbjct: 83  GLPIIFITAHGDVAMSVKAMKNGALDFLSKPFRDQEMLDAVEGALLKHEARRRTDGRVAE 142

Query: 170 AA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                 +LT RE   +     G  +++IA ++ LS  TV  + G+A  K++  +  + + 
Sbjct: 143 VRRRYESLTPREREVMGFVVRGLLNKQIAAEMDLSEITVKIHRGNAMRKMEVRSLAELVL 202

Query: 227 KAIRFGY 233
            A   G 
Sbjct: 203 GAKLLGI 209


>gi|318058563|ref|ZP_07977286.1| LuxR family two-component response regulator [Streptomyces sp.
           SA3_actG]
          Length = 235

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
               +V+    E  +++ + +         L+ RE   L L G G T+ +IAE+L L+  
Sbjct: 138 RMTSRVMARIREPEREKPAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEK 197

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           TV   + S   KL    RIQA   A R 
Sbjct: 198 TVKNRVSSILGKLGVGRRIQAAMIAERL 225


>gi|307545400|ref|YP_003897879.1| response regulator GacA [Halomonas elongata DSM 2581]
 gi|307217424|emb|CBV42694.1| response regulator GacA [Halomonas elongata DSM 2581]
          Length = 251

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L++RE     +  +     +IA+++ LS  TVN Y      KLD  + ++    A+
Sbjct: 180 PFDQLSQRELQVAMMIVNCQKVADIADRMFLSPKTVNTYRYRIFEKLDVHSDVELTHLAL 239

Query: 230 RFGYI 234
           R+G +
Sbjct: 240 RYGLV 244


>gi|50841898|ref|YP_055125.1| two-component system response regulator [Propionibacterium acnes
           KPA171202]
 gi|50839500|gb|AAT82167.1| two-component system response regulator [Propionibacterium acnes
           KPA171202]
          Length = 206

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 125 GFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                G   F  +         ++    A  + I   L   +        L+ RE   L+
Sbjct: 97  RAMDAGVAGFLVKDTPAEVLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LA  G +   IA +L LSV TV  ++ SA  K  A NR +A   A R G++
Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|94984291|ref|YP_603655.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554572|gb|ABF44486.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 200

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
           +R     +    +    R G+ +    +    +L+       +  GA  QV      +  
Sbjct: 69  LRTRCPEVRVVIVTTFARAGYLRRALEVGARGYLLKDAPA-SDLAGAIRQVHAGGRAIDP 127

Query: 166 KRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
             ++ A      LTERE   L+ A  G ++  IA +L LS  TV  YL  A  KL   NR
Sbjct: 128 GLAAEAWGERDPLTERERQVLRAAEGGASTAVIAARLNLSEGTVRNYLSEAISKLGCENR 187

Query: 222 IQAIAKAIRFGYI 234
           I+A  KA   G++
Sbjct: 188 IEAARKAREQGWL 200


>gi|254718410|ref|ZP_05180221.1| Monoamine regulon transcriptional regulator [Brucella sp. 83/13]
 gi|306840178|ref|ZP_07472961.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653]
 gi|306404743|gb|EFM61039.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653]
          Length = 245

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 177 GELLTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229


>gi|254476578|ref|ZP_05089964.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
 gi|214030821|gb|EEB71656.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
          Length = 244

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL--- 174
           I+  +  G           +    A + +            D L    + + AA  L   
Sbjct: 119 ISTAIHAGAAGFVPKHSQRDVYNNAFDAMRRGIAFVPPGY-DLLPHDSEANDAADRLATL 177

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           T ++   LQL   G  +++IA  L ++  TV A++ +   KL   +R QA+  A  
Sbjct: 178 TNQQARILQLICAGKLNKQIAFDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIAKE 233


>gi|149927326|ref|ZP_01915582.1| putative DNA-binding response regulator [Limnobacter sp. MED105]
 gi|149824040|gb|EDM83263.1| putative DNA-binding response regulator [Limnobacter sp. MED105]
          Length = 211

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++  F     ++S++   L+ RE   L     G    +IA++L +S HTV  ++ +
Sbjct: 129 IARKLMQYFQPNQGEQSASTAVLSVREIEVLGFLAKGIRLVDIAKQLEISHHTVGDHVKN 188

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  +R +A  KA  FG +
Sbjct: 189 IYRKLNINSRAEAAIKAQGFGLL 211


>gi|170736603|ref|YP_001777863.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169818791|gb|ACA93373.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 231

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L         A  L+ RE   ++L   G +  +IAE+L  S  T++    SA  KL
Sbjct: 137 MDRILRAAGNSGGKAPALSARELEVIRLFASGLSVNDIAEQLSRSKKTISTQKSSAMQKL 196

Query: 217 DAVNRIQAIAKAIRFGYI 234
                +  +  AI  G +
Sbjct: 197 GIERDVDLVRYAIACGLV 214


>gi|295839793|ref|ZP_06826726.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295827655|gb|EDY44664.2| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 206

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +         +++ S+ + LTERE   L+L   G ++ EIA  L +S  TV  ++G
Sbjct: 135 RLLDKYAGHLPSGEEQQPSSLQTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVG 194

Query: 211 SATVKLDAVNRI 222
               KL   +R+
Sbjct: 195 HVLTKLGLRDRV 206


>gi|329935679|ref|ZP_08285485.1| putative two-component system response regulator, LuxR family
           [Streptomyces griseoaurantiacus M045]
 gi|329304857|gb|EGG48729.1| putative two-component system response regulator, LuxR family
           [Streptomyces griseoaurantiacus M045]
          Length = 227

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETS 180
           V       G  I  +   +LA           +        +   R  A    LT RE S
Sbjct: 107 VHAAELLRGIRIVAAGESVLAPSATRRLLR--HYAGRPSSGIETGRVPAELNRLTARERS 164

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L L   G  + EIA  LG++V TV +++ +   KL   +R+QA   A   G 
Sbjct: 165 VLGLLASGLDNTEIAADLGITVGTVKSHVNAVLRKLALRDRVQATILAYDLGL 217


>gi|311279137|ref|YP_003941368.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
 gi|308748332|gb|ADO48084.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
          Length = 218

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                 A     Q+    +E  K  S  A +L+ERE   + +   G    EI+E+L LS 
Sbjct: 120 AGQRYIASDIAQQMALSQIEPEKTESPFA-SLSERELQIMLMITKGQKVNEISEQLNLSP 178

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            TVN+Y      KL+    ++    AIR G 
Sbjct: 179 KTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|307330665|ref|ZP_07609804.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883726|gb|EFN14773.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + ++       LT RE   + L   G  +EEIA ++ +S  TV  +   A  K+ A +R 
Sbjct: 147 IDRELLRRFDALTPRERDVVVLVASGLGNEEIAAQMSVSPFTVKTHAVRAMTKVGARDRA 206

Query: 223 QAIAKAIRFGY 233
           Q ++   R G 
Sbjct: 207 QLVSFTFRAGL 217


>gi|149278022|ref|ZP_01884161.1| transcriptional regulator, LuxR family protein [Pedobacter sp.
           BAL39]
 gi|149231220|gb|EDM36600.1| transcriptional regulator, LuxR family protein [Pedobacter sp.
           BAL39]
          Length = 210

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RET  L+L   G    +IA++L + V TV  +  +   KL+   + +AI  A    
Sbjct: 149 PLTKRETQILELITTGKDRGQIAKELFIEVETVKTHTKNIYAKLNVNTKAEAIQVAKDKR 208

Query: 233 YI 234
            +
Sbjct: 209 LV 210


>gi|302545152|ref|ZP_07297494.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462770|gb|EFL25863.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 201

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +         I A     +VI   L L        + LT RE   L++A +G  +  IA 
Sbjct: 105 DSSPATLCDAIRAVARGERVIDPQLALAALDDGP-QPLTPRELEVLRMASEGEEAARIAA 163

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LSV TV  YL SA  KLDA NR+ AI  A   G++
Sbjct: 164 RLFLSVGTVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201


>gi|299768423|ref|YP_003730449.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter sp.
           DR1]
 gi|298698511|gb|ADI89076.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter sp.
           DR1]
          Length = 216

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
            I         +  D     +   +   ++LT ++   L +  +G  +++IA +L +S  
Sbjct: 122 EIWLPPNLPPNLNLDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSEA 181

Query: 204 TVNAYLGSATVKLDAVNRIQAI 225
           T+ A++ +   KL   NR QA+
Sbjct: 182 TIKAHVTAIFRKLGVQNRTQAV 203


>gi|170019748|ref|YP_001724702.1| response regulator [Escherichia coli ATCC 8739]
 gi|169754676|gb|ACA77375.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
          Length = 218

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|119896860|ref|YP_932073.1| DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119669273|emb|CAL93186.1| DNA-binding response regulator [Azoarcus sp. BH72]
          Length = 211

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178
           +RLG           + L+ A   I +          + L          +A   L+ERE
Sbjct: 94  IRLGADGYLCKNCERDELVQAIRTIAQGRRYLSARTAELLAGEIAGDGSGAAHEQLSERE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                    G +   IA+ L LS+ TV+ Y      KLD  +  +    AIR G I
Sbjct: 154 LQVFLRLAHGESVSAIADALHLSIKTVSTYRSRVLEKLDVTSNAELATYAIRHGLI 209


>gi|115359691|ref|YP_776829.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|115284979|gb|ABI90495.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria AMMD]
          Length = 214

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|329945858|ref|ZP_08293545.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528306|gb|EGF55284.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 223

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               E    RS+A   LT+RE   ++   +G  + E+A +L +S  TV  ++ +   KL 
Sbjct: 146 DRGREHQDPRSTAFAALTDREYEVVEAVAEGLDNGEVAARLFMSEGTVRNHISAILAKLG 205

Query: 218 AVNRIQAIAKAIRF 231
             NR Q      R 
Sbjct: 206 LRNRTQVAVMYYRA 219


>gi|318077906|ref|ZP_07985238.1| LuxR family two-component response regulator [Streptomyces sp.
           SA3_actF]
          Length = 238

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
               +V+    E  +++ + +         L+ RE   L L G G T+ +IAE+L L+  
Sbjct: 141 RMTSRVMARIREPEREKPAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEK 200

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           TV   + S   KL    RIQA   A R 
Sbjct: 201 TVKNRVSSILGKLGVGRRIQAAMIAERL 228


>gi|314980198|gb|EFT24292.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|315088072|gb|EFT60048.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
          Length = 218

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G T+ EIA+ L ++  TV  ++G    KL+  +R+  +  A   G 
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 234 I 234
           +
Sbjct: 218 L 218


>gi|296117403|ref|ZP_06835992.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976056|gb|EFG82845.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC
           23769]
          Length = 256

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 62/219 (28%), Gaps = 14/219 (6%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF- 76
              L    + ++A +  L+ ++SA      +    E                    D   
Sbjct: 39  QATLAFGCDLLQASSAILFWVDSAHFVQTIELAGTEADLLPE-----YFNNGFYTYDPLN 93

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    +G   ++    +         Q+             I F  R        +    
Sbjct: 94  IRKVLNGSNNVLMLEQERNHNSHDHNQIHDTFLQRHGIVDEINFLFRNENDAVALLSVMK 153

Query: 137 EFLMLAN---EVIIE-AHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDG 188
             + L     +   E         +    ++  +R          LT +E   + L   G
Sbjct: 154 RQIDLTPFPTDFQWEPLRRYMEFTLQQHPQMRARRICRILKEKFYLTNKEVEVVFLLEKG 213

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            ++ EI+E + + + TV  ++ +   K    +R  A A 
Sbjct: 214 ASNWEISEIMHIGISTVKTHIVNILNKTGVGSRAAAAAY 252


>gi|149916047|ref|ZP_01904570.1| response regulator receiver [Roseobacter sp. AzwK-3b]
 gi|149810121|gb|EDM69969.1| response regulator receiver [Roseobacter sp. AzwK-3b]
          Length = 123

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR-NLT 175
           L    +G + + SE   L        +G           +     +   KR  A R  LT
Sbjct: 6   LDAGASGILTYNSEMSDLRVAARRVMNGDNYVQPDMAMDIFAKLRQAEAKRKEAERLRLT 65

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            RE+  ++    G T+ +I+ +L +S  TV  Y+GS   K  A NR++ + +A R G
Sbjct: 66  ARESQVVRHLMQGMTNGQISVELNISEKTVKHYVGSLKDKFGAANRLEVVLEAQRLG 122


>gi|327404698|ref|YP_004345536.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327320206|gb|AEA44698.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 217

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             ++      L+ RE   ++L    Y++E+IAE+L +S  TV  +  +   K +    + 
Sbjct: 145 EFRKDLEVAQLSNREIEIIRLIALEYSNEKIAEELFISKRTVETHRKNINQKTNIKTVVG 204

Query: 224 AIAKAIRFGYI 234
            I  AIR   +
Sbjct: 205 LIKFAIRNELV 215


>gi|319791685|ref|YP_004153325.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594148|gb|ADU35214.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 250

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   G++  EIA   GLSVHTV  ++ +   KL   ++ +A+ +A R G 
Sbjct: 186 LSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFEATRLGL 245

Query: 234 I 234
           +
Sbjct: 246 L 246


>gi|226304145|ref|YP_002764103.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183260|dbj|BAH31364.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 217

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 151 GACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                 +   +    +R +  +    +LTERE   L +   G  +  IAE+L L   TV 
Sbjct: 129 LFSCDSLRAIVASSPRRQAPDQTPLASLTEREREVLTILATGAANSVIAERLYLGETTVK 188

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++ S   KL   NR+ A   A R G +
Sbjct: 189 THISSLFAKLGVPNRVSASLIAFRCGLV 216


>gi|212638396|ref|YP_002314916.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559876|gb|ACJ32931.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 245

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK----KRSSAARNLTERET 179
              G+V  T+    L   +             V+              +     L+  E 
Sbjct: 125 GITGFVSKTASSEQLVTAIRCALRDEAVIPVHVLRQLCRCGAKENMDENGQLAVLSSLEQ 184

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L    +G  +++IAEK   S  T+  +L     KL   +RI+A+ KA + G I
Sbjct: 185 ELLMEVANGLCNKDIAEKHHTSQRTIERHLSRIFTKLHVSSRIEAVEKAKQLGLI 239


>gi|170751882|ref|YP_001758142.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170658404|gb|ACB27459.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 305

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 16/153 (10%)

Query: 87  IIWQ-----SIQEETVIESSGQLSVRLEGGL---LPFAGIAFPVRLGFHKNGYVIFTSEF 138
           ++W       +      + SG  ++            AG A P+ L       V +   F
Sbjct: 158 VLWSTPQAGRLLAGLGADPSGTRALPAGARDWLRGCLAGAAQPLAL--TDRDGVAYALSF 215

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
           +    + I+       ++  D L    +R  A   +T RE   L     G +S +I E L
Sbjct: 216 IGRTPDEIL------LRLSRDALSAGVERLRARLPVTGREAEVLLWLSRGKSSRDIGEIL 269

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           GLS  TV  +L     KL   NR  A   A R 
Sbjct: 270 GLSHRTVTKHLEGIYAKLGVENRTAASIIAARH 302


>gi|148553727|ref|YP_001261309.1| two component LuxR family transcriptional regulator [Sphingomonas
           wittichii RW1]
 gi|148498917|gb|ABQ67171.1| two component transcriptional regulator, LuxR family [Sphingomonas
           wittichii RW1]
          Length = 229

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   L     G T  EIA++L LS HTV  ++ +   KL    R +A+ +AI+
Sbjct: 164 APRLTPRELDILWGIAKGLTYNEIADQLDLSRHTVPGHIKAIYRKLQVQTRGEAVYEAIQ 223

Query: 231 FGYI 234
            G I
Sbjct: 224 CGLI 227


>gi|107027523|ref|YP_625034.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116693765|ref|YP_839298.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|170736933|ref|YP_001778193.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|105896897|gb|ABF80061.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
 gi|116651765|gb|ABK12405.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
 gi|169819121|gb|ACA93703.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 214

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|330809071|ref|YP_004353533.1| two-component system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377179|gb|AEA68529.1| putative two-component system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 209

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 14/157 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLMLANEV 145
           +       S   L  R+         +   +           + G   + ++       +
Sbjct: 53  LDMTMPGSSGEDLIGRIHAHYPKLPMLILSMHNEAHIAQRALRAGASGYMTKDRDPEALL 112

Query: 146 IIE------AHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEK 197
                    A     Q+           +   AA++LT RE   L++   G +  +IAE+
Sbjct: 113 AAIRKVSTGARYLDPQLAEQIALQSSGVTPENAAQSLTSREFQILRMLAQGLSVNQIAEQ 172

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +S  TV+ +      K+        +  A+  G +
Sbjct: 173 LVISNKTVSTHKTRLMEKMCFATSTDLVRYALNEGLV 209


>gi|300787038|ref|YP_003767329.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796552|gb|ADJ46927.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  + S     LT RE   L L  +G T++EI  +LG+S +T   ++     KL A ++
Sbjct: 142 RLTGRGSGGGAALTARERETLDLLAEGATTDEIGARLGVSRNTTRNHVQRVLEKLGARSK 201

Query: 222 IQAIAKAIRFGYI 234
           ++A+A A R G I
Sbjct: 202 LEAVAVARREGLI 214


>gi|255326927|ref|ZP_05368003.1| two component transcriptional regulator, LuxR family [Rothia
           mucilaginosa ATCC 25296]
 gi|255296144|gb|EET75485.1| two component transcriptional regulator, LuxR family [Rothia
           mucilaginosa ATCC 25296]
          Length = 210

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 6/117 (5%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTER 177
           R G+ +       S F++        A     +V      +    ++      A  LTER
Sbjct: 95  RPGYVRRALEAGASGFVVKDTGARQLAEAI-RRVHAGLRVVDPSLAADSLVTGASPLTER 153

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E   L+ A  G T+++IA  L LS  TV  YL +A  K  A  R  A+  A   G++
Sbjct: 154 EAQVLREAASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIATENGWL 210


>gi|160878241|ref|YP_001557209.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426907|gb|ABX40470.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 212

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T RE   +    +G +++EIA+KL +S  TV  ++ +   K    +R Q    
Sbjct: 151 TTRELDIIASVAEGLSNKEIAKKLFISEGTVKNHISTILEKGGFSHRTQLAVY 203


>gi|28868117|ref|NP_790736.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213970211|ref|ZP_03398342.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301385917|ref|ZP_07234335.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059557|ref|ZP_07251098.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130881|ref|ZP_07256871.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28851354|gb|AAO54431.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213925092|gb|EEB58656.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331018801|gb|EGH98857.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 207

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +   +A   LT R+   L L   G T++EIA++LG+S  TV  ++ S    L    R 
Sbjct: 136 FNESAVNALSPLTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRS 195

Query: 223 QAIA----KAIR 230
            A A     AIR
Sbjct: 196 AAAAQFSSLAIR 207


>gi|99080669|ref|YP_612823.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99036949|gb|ABF63561.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 204

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ R+   L+   +  T++EIA +L L   T+  ++ +   KL+  NR QA   A
Sbjct: 139 PLLDGLSPRQIQVLEGVCNAKTNKEIARELELEEVTIKFHVRTLCRKLEVQNRTQAALAA 198

Query: 229 IRFGY 233
              G 
Sbjct: 199 KSAGL 203


>gi|307324066|ref|ZP_07603275.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306890515|gb|EFN21492.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 430

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 64/220 (29%), Gaps = 10/220 (4%)

Query: 13  SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72
           S  +   RL      +  R  A+  ++                +    +  +   ++   
Sbjct: 217 SAGDAFARLAESLRPV-LRGLAV-RLDLGPPGTEEGADRLLPADVANTARAVVRAVVHAM 274

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
            D+     +    P+    +  +               G+L    +         +    
Sbjct: 275 LDEQGPGQDGAPHPVRRVHVGWKVGDGELRATVRDDGPGVLRRTAL-------DARRVGE 327

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
             ++    L  + + E                  R      L  RE   L+    G  + 
Sbjct: 328 RLSALGGRLDVDAVPEWGTLVT-ATVPLGPPQPARKDPLYVLGARELEVLERLARGRRNR 386

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +IA++L +S  TV  ++ +   KL   +R +A A A  +G
Sbjct: 387 QIAQELHISESTVKFHVANILEKLGVTSRGEAAALAHTWG 426


>gi|300863692|ref|ZP_07108626.1| Two component transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
 gi|300338324|emb|CBN53772.1| Two component transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
          Length = 224

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +  + +LT+RE   LQL  DG ++ +I ++L LS  TV  Y+ S   K D  NR +
Sbjct: 153 DSDITEKSLSLTQREKDVLQLLTDGLSNAQIGDRLHLSHRTVEKYVSSLLRKSDRTNRAE 212

Query: 224 AIAKAIRFGYI 234
            +  A+    +
Sbjct: 213 LVRFAMEHHLV 223


>gi|229589736|ref|YP_002871855.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361602|emb|CAY48480.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 205

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT R+     L   G T++EIA +L +S +TV  ++ S    L+  NR  A+A A 
Sbjct: 142 AMSKLTSRQREVWHLIAQGKTNKEIAAELQISPYTVRVHVSSLIRVLNVPNR--AVAAAR 199

Query: 230 RFG 232
             G
Sbjct: 200 FAG 202


>gi|219664363|gb|ACL31213.1| two-component system putative response regulator [Rhodococcus sp.
           TFB]
          Length = 206

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 33/77 (42%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            D  E      +   +L+ RE   L+L   G T+ EIAE L +S  TV ++  S   KL 
Sbjct: 129 ADTTESENPLEANIDSLSSRELEVLKLIASGLTNTEIAEGLTVSSRTVESHRASIQRKLL 188

Query: 218 AVNRIQAIAKAIRFGYI 234
              R +    A   G +
Sbjct: 189 LRTRAELARVARDAGLL 205


>gi|149927782|ref|ZP_01916034.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149823608|gb|EDM82838.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 222

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           LE+ K+ S     L+ RE   + L   G  ++ IA +L +S+ TV  +  +   KL   +
Sbjct: 139 LEVLKQWSERIDRLSPREREVMFLVAKGKLNKVIASELDISMRTVEVHRANVFDKLKVRS 198

Query: 221 RIQAIAKAIRF 231
             +      R 
Sbjct: 199 AAELATLLSRL 209


>gi|126653126|ref|ZP_01725255.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905]
 gi|126590131|gb|EAZ84256.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905]
          Length = 243

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            +T RE   L     G  + EIA++L +S +T+  +L +   K    NR Q +AK +
Sbjct: 181 EMTAREREVLNFVSKGLKNVEIAQQLIVSENTIKKHLQNLYRKFQVTNRTQLLAKCL 237


>gi|157371824|ref|YP_001479813.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157323588|gb|ABV42685.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 210

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           NLT R+   L +   G+ ++ IA +L +S  TV  ++ +   K+   +R++AI
Sbjct: 147 NLTPRQVEVLAMMLRGFPNKRIASQLSISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|62199613|gb|AAX76904.1| EsrB [Edwardsiella tarda]
          Length = 214

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +     +    LT RE   L+L  +G  + +IAE L +S+ TV  +  +   KLDA N  
Sbjct: 141 VASSDMAQEPPLTLRERQILKLVAEGKRNRDIAELLSISLKTVETHRLNLMRKLDAHNAA 200

Query: 223 QAIAKAIRFGYI 234
           +    A R G +
Sbjct: 201 ELSNWARRLGVL 212


>gi|329957147|ref|ZP_08297714.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328523415|gb|EGF50514.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 204

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 145 VIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            I +        I   L   ++  + S    L++RE   +     G T++ IA+KL LS+
Sbjct: 104 AICDDIEVITAKINRLLHTEEEDEKDSEQETLSQREKEIITCVVKGMTNKAIADKLYLSI 163

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           HTV  +  +   KL   +       AI    +
Sbjct: 164 HTVITHRRNIARKLQIHSPAGLTIYAIVNKLV 195


>gi|207723660|ref|YP_002254058.1| two-component response regulator [Ralstonia solanacearum MolK2]
 gi|206588864|emb|CAQ35826.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 217

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA   L+ RE S LQL  +G T+ ++   L LS  T+  Y      KL   N    +  A
Sbjct: 129 SAWETLSARERSVLQLVAEGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVCNVTGLVLAA 188

Query: 229 IRFGYI 234
           I  G I
Sbjct: 189 IDLGLI 194


>gi|330975353|gb|EGH75419.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 87

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 14  AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 73

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 74  AALLLQQL 81


>gi|313835533|gb|EFS73247.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928592|gb|EFS92423.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970359|gb|EFT14457.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|314982460|gb|EFT26553.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315090549|gb|EFT62525.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094064|gb|EFT66040.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|328908207|gb|EGG27966.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 206

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                G   F  +         ++    A  +VI   L   +        L+ERE   L+
Sbjct: 97  RAMDAGVAGFLVKDTPAEDLARVVREVHAGGRVIDPALA-AESLIEGHNPLSEREREILR 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LA  G +   IA +L LSV TV  ++ SA  K  A NR +A   A + G++
Sbjct: 156 LAESGASISLIASQLYLSVGTVRNHVSSAIGKTGAANRTEAAVTARQRGWL 206


>gi|298250270|ref|ZP_06974074.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548274|gb|EFH82141.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 596

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     T+RE   + L   G ++ EIA KL +S  TV  ++ +   KL+  +R QA+AK
Sbjct: 518 ARRELFTQRENEVINLLLQGASNREIAAKLIISEGTVKKHVANICGKLEVKSRTQALAK 576


>gi|294141463|ref|YP_003557441.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293327932|dbj|BAJ02663.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 210

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +     + NLT RE   LQ    G T+ +IA +L +S  T+  +L  A  K+   +R Q
Sbjct: 137 DQSHMEGSDNLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYRAFRKIGVSSRGQ 196

Query: 224 AIAK 227
           AIA 
Sbjct: 197 AIAW 200


>gi|239816173|ref|YP_002945083.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802750|gb|ACS19817.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 262

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               +       LT RE   L+    G  S+EI+ +LG+S  TVNA++ +   KL   +R
Sbjct: 190 RPPTETPLREATLTAREREVLRFVARGCVSKEISVRLGISGQTVNAHIKNIYKKLHVHSR 249

Query: 222 IQAIAKAIRFG 232
            QA++ A   G
Sbjct: 250 AQAVSLATHTG 260


>gi|251794754|ref|YP_003009485.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542380|gb|ACS99398.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 200

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           +  +      +    A  + I+  L L      A   LTERE   L+LA +G  + EIA 
Sbjct: 104 DSPIDELSAALRNVYAGKRAISPELALSFWE--AENPLTEREREVLRLAREGLPAGEIAS 161

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LS  TV  YL  A  KLDA NRI AI  A + G++
Sbjct: 162 RLFLSAGTVRNYLSEAIQKLDAKNRIDAIGIAEKNGWL 199


>gi|152964247|ref|YP_001360031.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151358764|gb|ABS01767.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 228

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIE--------AHGACYQVITDFLELFKKRSSAARN 173
           +R G         + + L  A   + E          G                      
Sbjct: 108 IRRGARGYVTKAISGDDLAAAVRRVAEGDAVFSPRLAGFVLDAFGAGAGEVAAADDELDR 167

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   ++L   GY  +E+A++L +SV TV  ++ +   KL   NR +    A     
Sbjct: 168 LSAREREVMRLIARGYAYKEVAKELFISVKTVETHVSAVLRKLQLSNRNELTRWAAARRL 227

Query: 234 I 234
           +
Sbjct: 228 L 228


>gi|172064507|ref|YP_001812158.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171997024|gb|ACB67942.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 214

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|152983933|ref|YP_001349196.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959091|gb|ABR81116.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 268

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 21/178 (11%)

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
                 D F      GL   +++  +         +  +      +    + F +++   
Sbjct: 76  NGLYLLDPFYQACREGLPSGLYRLEEIAPDHFRQSEYYLSYFHDNVLEDEVQFILQVPGQ 135

Query: 128 KNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKRSSAARN------------ 173
               +    + +    E  ++         ++    +   +R   A              
Sbjct: 136 GALSLSLGMQRMFADEECGMLGLLASWVLALMQQHWQQRSQRLLPAAPQEEMATQIRDAL 195

Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                  L+ERE    +L   GY+S+ +AE+L +S  T+  +      KLD  ++ + 
Sbjct: 196 SHFGASVLSERELEIARLILRGYSSKAMAERLAISPETIKVHRRHLYAKLDISSQPEL 253


>gi|227818586|ref|YP_002822557.1| CitB, response regulator containing a CheY-like receiver domain and
           an HTH DNA-binding domain CitB [Sinorhizobium fredii
           NGR234]
 gi|36958841|gb|AAQ87266.1| two-component response regulator [Sinorhizobium fredii NGR234]
 gi|227337585|gb|ACP21804.1| putative CitB, response regulator containing a CheY-like receiver
           domain and an HTH DNA-binding domain CitB [Sinorhizobium
           fredii NGR234]
          Length = 217

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            LT RE   L+L   G +++++A  L L   T+  ++     KLD  NR +A 
Sbjct: 152 ELTTREREVLKLVASGMSNKQVARNLNLHEKTIKHHMTQIMAKLDVANRTEAA 204


>gi|82775855|ref|YP_402202.1| putative response regulator [Shigella dysenteriae Sd197]
 gi|309785989|ref|ZP_07680618.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617]
 gi|81240003|gb|ABB60713.1| putative response regulator [Shigella dysenteriae Sd197]
 gi|308926100|gb|EFP71578.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617]
          Length = 209

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147
           I      E+   L  RL      F  I   +          +       L      E ++
Sbjct: 53  IDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGPEELV 112

Query: 148 EA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +A        H  C   I   L    + + A   LT RE     L   G + +EIA KL 
Sbjct: 113 QAVRSVGLGGHYLCADAI-RALRGGGQPAQALEILTPREREVFDLLVKGDSVKEIAFKLE 171

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  TV+ +  +   KL+  + I+ +   +    +
Sbjct: 172 LSHKTVHVHRANVLGKLNCHSTIELVHFVLDHHLL 206


>gi|314930861|gb|EFS94692.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
          Length = 218

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G T+ EIA+ L ++  TV  ++G    KL+  +R+  +  A   G 
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 234 I 234
           +
Sbjct: 218 L 218


>gi|308049915|ref|YP_003913481.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632105|gb|ADN76407.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 216

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 142 ANEVIIEAHGAC----YQVITDFLELFK------KRSSAARNLTERETSCLQLAGDGYTS 191
             + + EA          + ++  EL +         +    LT ++   LQ+  +G  +
Sbjct: 110 DPDQLAEALQIVLDGDTYLPSNMAELAEPSFEANDIGAKLAELTPQQYRVLQMFAEGMLN 169

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           ++IA  LG+S  T+ A+  +   KL   NR QA+ 
Sbjct: 170 KQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 204


>gi|288574077|ref|ZP_06392434.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569818|gb|EFC91375.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 832

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 15/141 (10%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP------VRLGFHKNGYVIFTSEFLM 140
           + +  +  E+    +   ++ +        G+  P      V             S    
Sbjct: 691 VAYSRLGRESDGAEALGRALDMAMP----DGLILPFAENADVLGSSLDVVMEERWSSERN 746

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
             +  +        +V+            A   LT RE     L  +G ++ EIA++L L
Sbjct: 747 RFSSFVKRYSLGKERVLQSLSGRE-----AVEGLTFRENDVALLVSEGLSNREIAKRLFL 801

Query: 201 SVHTVNAYLGSATVKLDAVNR 221
           S +TV  YL S   KL   +R
Sbjct: 802 SENTVKFYLKSIFQKLGISSR 822


>gi|226363605|ref|YP_002781387.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242094|dbj|BAH52442.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 897

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 157 ITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             + L     RS  +A+  LT RE   L       T+E+IA  L +SV+TV  +L     
Sbjct: 818 FAETLRASFPRSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYR 877

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +R  AIA A   G +
Sbjct: 878 KLGVTSRRDAIAAAQHNGLL 897


>gi|146306323|ref|YP_001186788.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145574524|gb|ABP84056.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 215

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +LT ++   L +  +G  +++IA +L +S  TV A++ +   KL    R QA   
Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELSVSEATVKAHVTAIFRKLGVRTRTQAALL 206


>gi|238918900|ref|YP_002932414.1| hypothetical protein NT01EI_0965 [Edwardsiella ictaluri 93-146]
 gi|84663108|gb|ABC60090.1| EsrB [Edwardsiella ictaluri 93-146]
 gi|238868467|gb|ACR68178.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 214

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 11/143 (7%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACY--Q 155
            +  +L         +         +    +                ++     A     
Sbjct: 70  DVIRQLRRRWNDMRIVVVTASSEARRGSDALAAGALAYVLKQSPQQTLLAAMQHASLGKT 129

Query: 156 VITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
            +   L L    +    +    LT RE   L+L  +G  + +IAE L +S+ TV  +  +
Sbjct: 130 FVDPALRLDSLEASSDIAQEPPLTLRERQILKLVAEGNRNRDIAELLSISLKTVETHRLN 189

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KLDA N  +    A R G +
Sbjct: 190 LMRKLDAHNAAELSNWARRLGVL 212


>gi|82701372|ref|YP_410938.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82409437|gb|ABB73546.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 267

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAA----------R 172
           G H   YV+F+S+  +  + +I            +     L +     +           
Sbjct: 145 GHHDCLYVVFSSKDKLDDSTLIAMEILLPYLDTALRRVTPLPQHSCRPSLLADAPEYDLH 204

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ERE   +     G T+ EI   L +S +TV  +L     KLD  NR+QAI+K
Sbjct: 205 GLSEREVEIMTWVRKGKTNAEIGSILRISSYTVKNHLHQIFRKLDVYNRVQAISK 259


>gi|126172600|ref|YP_001048749.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|152998897|ref|YP_001364578.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|125995805|gb|ABN59880.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
 gi|151363515|gb|ABS06515.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
          Length = 198

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L ++E   L+LA +G ++ +IAE L ++  TV  YL  A  KL+A NRI A   A + 
Sbjct: 136 DPLNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQK 195

Query: 232 GYI 234
           G++
Sbjct: 196 GWL 198


>gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 307

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 21/219 (9%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI------PNILIETYGDD 75
             +   ++A      T    +D   R ++   L N                 L+   GD 
Sbjct: 95  EHVVRALEAGGVDYLTKPINID-ELRARIRVHLSNARSAQSARVALDAAGRHLLAVRGDG 153

Query: 76  FLFH----FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            +          +            V     +     E       G  F ++        
Sbjct: 154 TVRWSTPQATRLVNAATGSDDGLAFVAGRIAEWMRERENSPGERQG-TFTLQRASQTGLQ 212

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           + +     + ANE +            + L    +       LT+RE+  L     G ++
Sbjct: 213 ISYLGA--IGANEYLFRLTAENGMSDDETLRQHFR-------LTQRESEVLLWIAKGKSN 263

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            +I E LGLS  TV  +L    VKL   NR  A  KA +
Sbjct: 264 RDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQ 302


>gi|226326299|ref|ZP_03801817.1| hypothetical protein PROPEN_00147 [Proteus penneri ATCC 35198]
 gi|225205250|gb|EEG87604.1| hypothetical protein PROPEN_00147 [Proteus penneri ATCC 35198]
          Length = 205

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
            +   L   ++  +   +L+ERE   + +   G    +IA +L ++  TVN+Y      K
Sbjct: 115 AMEIALTKLQQELNPLHHLSERELQIMSMIIRGKKITQIASELNINTKTVNSYRYRMFSK 174

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L     ++    AIR+G I
Sbjct: 175 LKISGDVELTHIAIRYGLI 193


>gi|224583552|ref|YP_002637350.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468079|gb|ACN45909.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 206

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 117 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 175

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 176 MFSKLNIHGDVELTHLAIRHGL 197


>gi|213618592|ref|ZP_03372418.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 96

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 7   IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 65

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 66  MFSKLNIHGDVELTHLAIRHGL 87


>gi|182436316|ref|YP_001824035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464832|dbj|BAG19352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 354

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L+ RE   + L   G ++++IA    +S  TV  ++     KL + +R +AIA
Sbjct: 287 RLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIA 340


>gi|161502931|ref|YP_001570043.1| response regulator [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864278|gb|ABX20901.1| hypothetical protein SARI_00990 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 218

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 129 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209


>gi|311067079|ref|YP_003972002.1| response regulator [Bacillus atrophaeus 1942]
 gi|310867596|gb|ADP31071.1| response regulator [Bacillus atrophaeus 1942]
          Length = 159

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 33/77 (42%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               ++   + S    LT+RE   L+   +G   + IA KL LS  TV  Y      KLD
Sbjct: 83  EQLEKIDSSKESYPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTVRNYCSKLYSKLD 142

Query: 218 AVNRIQAIAKAIRFGYI 234
             NR +AI  A     +
Sbjct: 143 VNNREEAIKMARTENIV 159


>gi|325110990|ref|YP_004272058.1| LuxR family transcriptional regulator [Planctomyces brasiliensis
           DSM 5305]
 gi|324971258|gb|ADY62036.1| two component transcriptional regulator, LuxR family [Planctomyces
           brasiliensis DSM 5305]
          Length = 228

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 139 LMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           +     V         Q+    L        ++  SA   L++RE    +  G G T+ +
Sbjct: 126 IDAIRRVAAGRVYLSDQMTDRMLCRQVGAGDERPKSALETLSDRELEVFEQIGHGVTTRQ 185

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           IAEKL LS  TV  Y  +   KL+  N  +    A++
Sbjct: 186 IAEKLHLSPKTVETYRENIKHKLNLANATELTQHAVQ 222


>gi|298291984|ref|YP_003693923.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928495|gb|ADH89304.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 269

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLG 199
               +++A           +      +  A+  +LTER+ +  +L   G++++ IA +L 
Sbjct: 125 PPSALLQAQALSNSADWRRMSGPAHATYRAQCSSLTERQAAVWRLLQRGHSNKVIARELA 184

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAI 225
           +   TV  ++     KL A NR QA 
Sbjct: 185 MCESTVKVHMRQIMRKLGATNRTQAA 210


>gi|265983374|ref|ZP_06096109.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|264661966|gb|EEZ32227.1| two component transcriptional regulator [Brucella sp. 83/13]
          Length = 254

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 186 GELLTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238


>gi|291302292|ref|YP_003513570.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571512|gb|ADD44477.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 210

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               ++I +F     +  S A   +LT+RE   L   G G ++ +I + LG++  TV  +
Sbjct: 125 AVTRRLIAEFGRRRPRPGSQADLSSLTQREIEVLSHIGRGLSNADIGKDLGMAEATVKTH 184

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           +     KL+  +R+QA   A   G 
Sbjct: 185 VSRILSKLELQSRVQAAILAQENGI 209


>gi|296141810|ref|YP_003649053.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296029944|gb|ADG80714.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 216

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 44/77 (57%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +V+    +  +  S A   LT +E + L+L G+G T+++IAE++ L+  TV  ++    
Sbjct: 131 ARVLQRIRDADRVPSLAQAGLTGQEEAVLELLGEGLTNKQIAERMFLAEKTVRNHVTGVL 190

Query: 214 VKLDAVNRIQAIAKAIR 230
            KL   NR+QA  +A++
Sbjct: 191 AKLGVENRVQAALRAVQ 207


>gi|262202270|ref|YP_003273478.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085617|gb|ACY21585.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 212

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ERE   L     G +  ++A +L +   TV  +      KL   +R  A+A+ IR
Sbjct: 148 SPALSEREHQVLVGFAQGRSIPQLAAELFIGASTVKTHTQRLYEKLGVSDRAAAVAEGIR 207

Query: 231 FGYI 234
            G I
Sbjct: 208 RGLI 211


>gi|226364631|ref|YP_002782413.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243120|dbj|BAH53468.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 27/227 (11%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP-------N 66
           + +       +   +    FA+      +    R+          +D             
Sbjct: 15  VDDHPMWRDAVARDLDGAGFAVVATADGVAAAGRRAAATRPAVVLMDMQLPDGNGAAATA 74

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
            +++   D  +   ++         + +     +SG L        L  A     VR   
Sbjct: 75  AVLDVSPDSRVLVLSASSER---DDVLDAVKAGASGYLVKSASVEELLDA-----VRATA 126

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                                 A     +          ++  A   LTERET  L+   
Sbjct: 127 AGQAVFTPG------------LAGLVLGEYRRMSSAPADEQGPAVPKLTERETEVLRFVA 174

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            G ++++IA KL LS  TV  ++ +   KL   NR++    AI  G 
Sbjct: 175 KGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|157145294|ref|YP_001452613.1| response regulator [Citrobacter koseri ATCC BAA-895]
 gi|157082499|gb|ABV12177.1| hypothetical protein CKO_01031 [Citrobacter koseri ATCC BAA-895]
          Length = 217

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 129 IAQQMALSQIEPEKTETPFA-SLSERELQIMLMITRGQKVNEISEQLNLSPKTVNSYRYR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209


>gi|187921892|ref|YP_001893481.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
 gi|187720330|gb|ACD21552.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 217

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 19/149 (12%)

Query: 104 LSVRLEGGLLP-------FAGIAFPV--RLGFHKN-----GYVIFTSEFLMLANEVIIEA 149
           L VRL G            +G+  PV    G                +FL    +     
Sbjct: 60  LDVRLRGKSGMAFHQEIVNSGMLIPVVFMTGHGDIEMGVKAMKAGALDFLAKPFKDQDML 119

Query: 150 HGACYQVITDFLELFKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                 +  D   L  + +     ++   L+ RE   +     G  +++IA  + LS  T
Sbjct: 120 DAVAQALAQDSGRLAAEAALTGLRASYECLSPREKEVMGFVLSGLLNKQIASAMNLSEIT 179

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V  +      K++A +    + KA   G 
Sbjct: 180 VKVHRAQVMRKMNARSMPDLVRKAESLGI 208


>gi|315166918|gb|EFU10935.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1341]
          Length = 281

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|315151567|gb|EFT95583.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0012]
          Length = 281

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|315145234|gb|EFT89250.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2141]
 gi|315161933|gb|EFU05950.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0645]
          Length = 281

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|312904250|ref|ZP_07763412.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0635]
 gi|310632346|gb|EFQ15629.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0635]
 gi|315578796|gb|EFU90987.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0630]
          Length = 281

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|307269785|ref|ZP_07551115.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX4248]
 gi|306513895|gb|EFM82497.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX4248]
 gi|315025770|gb|EFT37702.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2137]
 gi|315036110|gb|EFT48042.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0027]
 gi|329576889|gb|EGG58374.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1467]
          Length = 281

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|297156374|gb|ADI06086.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 35/85 (41%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A        +D      +      +LTERE   L   G+G ++ +I  +L LS  T+  
Sbjct: 131 AAARRLVAASSDGHSARDRARRLVESLTEREAEVLAGLGEGLSNAQIGARLYLSEATIKG 190

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFG 232
           Y+     KL  VNR QA   A   G
Sbjct: 191 YVSRLLDKLGCVNRTQAGLIAHEAG 215


>gi|293385055|ref|ZP_06630889.1| transcriptional regulator, LuxR family [Enterococcus faecalis R712]
 gi|293389326|ref|ZP_06633787.1| transcriptional regulator, LuxR family [Enterococcus faecalis S613]
 gi|312906044|ref|ZP_07765057.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO
           512]
 gi|312909390|ref|ZP_07768246.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO
           516]
 gi|291077733|gb|EFE15097.1| transcriptional regulator, LuxR family [Enterococcus faecalis R712]
 gi|291081348|gb|EFE18311.1| transcriptional regulator, LuxR family [Enterococcus faecalis S613]
 gi|310628039|gb|EFQ11322.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO
           512]
 gi|311290414|gb|EFQ68970.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO
           516]
          Length = 281

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|257083658|ref|ZP_05578019.1| two-component system regulator [Enterococcus faecalis Fly1]
 gi|256991688|gb|EEU78990.1| two-component system regulator [Enterococcus faecalis Fly1]
          Length = 321

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|257080996|ref|ZP_05575357.1| two-component system regulator [Enterococcus faecalis E1Sol]
 gi|256989026|gb|EEU76328.1| two-component system regulator [Enterococcus faecalis E1Sol]
          Length = 321

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|256959865|ref|ZP_05564036.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256950361|gb|EEU66993.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
          Length = 321

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|256957400|ref|ZP_05561571.1| two-component system regulator [Enterococcus faecalis DS5]
 gi|257077604|ref|ZP_05571965.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257086090|ref|ZP_05580451.1| two-component system regulator [Enterococcus faecalis D6]
 gi|294779936|ref|ZP_06745317.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           PC1.1]
 gi|256947896|gb|EEU64528.1| two-component system regulator [Enterococcus faecalis DS5]
 gi|256985634|gb|EEU72936.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|256994120|gb|EEU81422.1| two-component system regulator [Enterococcus faecalis D6]
 gi|294452985|gb|EFG21406.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           PC1.1]
          Length = 321

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|256617617|ref|ZP_05474463.1| two-component system regulator [Enterococcus faecalis ATCC 4200]
 gi|257089157|ref|ZP_05583518.1| predicted protein [Enterococcus faecalis CH188]
 gi|256597144|gb|EEU16320.1| two-component system regulator [Enterococcus faecalis ATCC 4200]
 gi|256997969|gb|EEU84489.1| predicted protein [Enterococcus faecalis CH188]
          Length = 321

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|255971190|ref|ZP_05421776.1| predicted protein [Enterococcus faecalis T1]
 gi|255962208|gb|EET94684.1| predicted protein [Enterococcus faecalis T1]
          Length = 321

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|300023398|ref|YP_003756009.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525219|gb|ADJ23688.1| transcriptional regulator, LuxR family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 241

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 102 GQLSVRLEGGLLPFAGIAFP--VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
           G       G       +      R     +G+ +  +    L  + I         +++ 
Sbjct: 104 GVPVSPEAGSGALLMHVDVSSWARHDTADDGWQMPVTLNPALLQDTI------SKALVSQ 157

Query: 160 FLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           F E  +  +      +L+ R+   L L   G ++ EI+E+L  S++TV  ++ +   KL 
Sbjct: 158 FAEPQRSYEAHPDIDSLSPRQREVLLLVAVGKSNLEISEELSCSLNTVKRHVTAVLQKLH 217

Query: 218 AVNRIQAIAKAIRFGYI 234
             NR +A   A +   +
Sbjct: 218 LPNRTRAANLANQLNLL 234


>gi|300862032|ref|ZP_07108112.1| transcriptional regulator, LuxR family [Enterococcus faecalis TUSoD
           Ef11]
 gi|300848557|gb|EFK76314.1| transcriptional regulator, LuxR family [Enterococcus faecalis TUSoD
           Ef11]
          Length = 321

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|227554847|ref|ZP_03984894.1| LuxR family transcriptional regulator [Enterococcus faecalis HH22]
 gi|229546568|ref|ZP_04435293.1| LuxR family transcriptional regulator [Enterococcus faecalis
           TX1322]
 gi|229548677|ref|ZP_04437402.1| LuxR family transcriptional regulator [Enterococcus faecalis ATCC
           29200]
 gi|255973814|ref|ZP_05424400.1| two-component system regulator [Enterococcus faecalis T2]
 gi|256761500|ref|ZP_05502080.1| two-component system regulator [Enterococcus faecalis T3]
 gi|256854402|ref|ZP_05559766.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256964432|ref|ZP_05568603.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257415300|ref|ZP_05592294.1| two-component system regulator [Enterococcus faecalis AR01/DG]
 gi|257418341|ref|ZP_05595335.1| predicted protein [Enterococcus faecalis T11]
 gi|257420990|ref|ZP_05597980.1| LuxR family transcriptional regulator [Enterococcus faecalis X98]
 gi|227176016|gb|EEI56988.1| LuxR family transcriptional regulator [Enterococcus faecalis HH22]
 gi|229306193|gb|EEN72189.1| LuxR family transcriptional regulator [Enterococcus faecalis ATCC
           29200]
 gi|229308313|gb|EEN74300.1| LuxR family transcriptional regulator [Enterococcus faecalis
           TX1322]
 gi|255966686|gb|EET97308.1| two-component system regulator [Enterococcus faecalis T2]
 gi|256682751|gb|EEU22446.1| two-component system regulator [Enterococcus faecalis T3]
 gi|256709962|gb|EEU25006.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256954928|gb|EEU71560.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257157128|gb|EEU87088.1| two-component system regulator [Enterococcus faecalis ARO1/DG]
 gi|257160169|gb|EEU90129.1| predicted protein [Enterococcus faecalis T11]
 gi|257162814|gb|EEU92774.1| LuxR family transcriptional regulator [Enterococcus faecalis X98]
 gi|323479927|gb|ADX79366.1| Transcriptional regulator, LuxR family [Enterococcus faecalis 62]
 gi|327534321|gb|AEA93155.1| LuxR family transcriptional regulator [Enterococcus faecalis OG1RF]
          Length = 321

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|227517697|ref|ZP_03947746.1| LuxR family transcriptional regulator [Enterococcus faecalis
           TX0104]
 gi|227074852|gb|EEI12815.1| LuxR family transcriptional regulator [Enterococcus faecalis
           TX0104]
          Length = 321

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 251 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|29375326|ref|NP_814480.1| LuxR family transcriptional regulator [Enterococcus faecalis V583]
 gi|307272545|ref|ZP_07553798.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0855]
 gi|307274680|ref|ZP_07555852.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
 gi|307284507|ref|ZP_07564669.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0860]
 gi|307289576|ref|ZP_07569520.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0109]
 gi|307296378|ref|ZP_07576203.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0411]
 gi|312900327|ref|ZP_07759638.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|312953116|ref|ZP_07771965.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0102]
 gi|29342786|gb|AAO80550.1| transcriptional regulator, luxR family [Enterococcus faecalis V583]
 gi|306496062|gb|EFM65646.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0411]
 gi|306499390|gb|EFM68763.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0109]
 gi|306503184|gb|EFM72438.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0860]
 gi|306508609|gb|EFM77707.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
 gi|306510830|gb|EFM79847.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0855]
 gi|310628950|gb|EFQ12233.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0102]
 gi|311292515|gb|EFQ71071.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|315029094|gb|EFT41026.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX4000]
 gi|315031442|gb|EFT43374.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0017]
 gi|315146952|gb|EFT90968.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX4244]
 gi|315153973|gb|EFT97989.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0031]
 gi|315156767|gb|EFU00784.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0043]
 gi|315157723|gb|EFU01740.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0312]
 gi|315164575|gb|EFU08592.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1302]
 gi|315170702|gb|EFU14719.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1342]
 gi|315172183|gb|EFU16200.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1346]
 gi|315575359|gb|EFU87550.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0309B]
 gi|315581389|gb|EFU93580.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0309A]
          Length = 281

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+RE   L L  +  T+++IA +L LS+ TV  ++ +  VKL+   R +
Sbjct: 211 AYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|27375369|ref|NP_766898.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27348505|dbj|BAC45523.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 223

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNLTE 176
            P+ +   K G V F S+     ++ +++A  A  +            +   +    LT 
Sbjct: 99  IPMSVRAMKAGAVDFLSK--PFRDQDMLDAVTAALERDAQHRAEAATKEDIRAQYGTLTA 156

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           RE   +     G  ++++A  +GLS  TV  + G+   K+   +    + KA   G
Sbjct: 157 REREVMGHVTAGLMNKQVAALIGLSEITVKIHRGNVMRKMGVRSLADLVRKAEALG 212


>gi|309812489|ref|ZP_07706242.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
 gi|308433544|gb|EFP57423.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
          Length = 253

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +  +       LT RE   L L   G ++ +IA +  LS+++V +Y+ +   K+   +R 
Sbjct: 167 IAGEWPGREEGLTPREAEVLALITQGLSNNDIAAQTHLSINSVKSYIRTGYRKIGVTSRS 226

Query: 223 QAIAKAIRFGY 233
           QA+   +R G+
Sbjct: 227 QAVLWGVRHGF 237


>gi|260767312|ref|ZP_05876252.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP
           102972]
 gi|260617719|gb|EEX42898.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP
           102972]
          Length = 216

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 143 NEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            E+I   +     V +  L           + A   LT RE   L+    G ++ ++AE 
Sbjct: 120 AEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRELQILRSLQTGASNMQMAEN 179

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L +S  TV ++L     KL   NR QAI  A
Sbjct: 180 LFISEFTVKSHLYQIFKKLSVKNRTQAITWA 210


>gi|300771877|ref|ZP_07081748.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761263|gb|EFK58088.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 459

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            LTERE   L    +G +++E+ EKL +S++TV  ++ +  +KLD  +R QA
Sbjct: 397 QLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQA 448


>gi|227540152|ref|ZP_03970201.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240013|gb|EEI90028.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 465

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            LTERE   L    +G +++E+ EKL +S++TV  ++ +  +KLD  +R QA
Sbjct: 403 QLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQA 454


>gi|145298529|ref|YP_001141370.1| DNA-binding transcriptional activator UhpA [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851301|gb|ABO89622.1| two-component system response regulator UhpA [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 196

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 6/116 (5%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQ--VITDFLELFKKRSSAA 171
           +   V          +       L+     + +I A                 K   ++ 
Sbjct: 76  VMLSVHDSPALIEQALQAGAKGFLSKRCSPDELIAAVRTAAHGGCYLTPDIAHKLACNSQ 135

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             LT RE    QL   G   + IAE+LGLS  TV+ +  +   KL   N ++   +
Sbjct: 136 DPLTNREREVAQLLARGLEVKAIAEQLGLSPKTVHVHRANLMDKLKVSNNVELAHR 191


>gi|123444262|ref|YP_001008230.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122091223|emb|CAL14106.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 196

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           A   LT RE     L   G    +IAE LGLS  TV+ +  +   KL   N ++  
Sbjct: 135 AIDPLTRREREVAVLLAQGMEVRDIAESLGLSPKTVHVHRANLFAKLGVSNNVELA 190


>gi|83647885|ref|YP_436320.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635928|gb|ABC31895.1| Response regulator [Hahella chejuensis KCTC 2396]
          Length = 203

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + L   +K      +LT RE   +++  +G  ++ IA +L +S  TV  +      K+  
Sbjct: 129 EALRHKEKLRQKIESLTPRELEIMEMMIEGNANKVIAIELNISQRTVEIHRSRVMQKMGT 188

Query: 219 VNRIQAI--AKAIR 230
            +  Q +    A R
Sbjct: 189 HSLAQLVQMVLAAR 202


>gi|329924857|ref|ZP_08279807.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328940393|gb|EGG36719.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 223

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAG 186
           +  S    +A + I+ A     ++      + +  S   +       LTERE    +L  
Sbjct: 119 MIASIRDTIAGQFILPA-PVAAKLAARMNRMSEGHSGLRKNRLDRIRLTEREEELARLMV 177

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            G  + EIA+ L ++  T   Y+ +   KL+ V+R QAI +
Sbjct: 178 QGLNNREIADMLHIAEGTARNYISNLYSKLEVVDRAQAIVR 218


>gi|330809462|ref|YP_004353924.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377570|gb|AEA68920.1| putative two-component response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 216

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAE 196
               + +++A  A  Q       + ++ +   +    LT RE   +  A  G  +++IA 
Sbjct: 116 PFREQDLLDAVSAALQADVKRRAVERQLADLHARYETLTAREKEVMTFAAKGLMNKQIAG 175

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ LS  TV  + G A  K+ A +    +  A   G
Sbjct: 176 QMNLSEITVKIHRGHAMKKMHAKSFADLVRMAESLG 211


>gi|312173141|emb|CBX81396.1| Nitrate/nitrite response regulator protein homolog [Erwinia
           amylovora ATCC BAA-2158]
          Length = 209

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQ 183
               GY++  SE   L  ++I  A G   +   +     +   +      LT RE   L+
Sbjct: 100 AGAEGYLLKDSEPEDLLAQIIEVAEGRVARSPCLQASGPVESWKCDPLATLTPREQEVLK 159

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
               G  ++++AE L +S  TV  ++ +   KL+  +R+ A    + 
Sbjct: 160 EVASGLPNKQVAENLAISEQTVKVHIRNVLRKLNVRSRVAATVLWLE 206


>gi|296187029|ref|ZP_06855429.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|296048467|gb|EFG87901.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 219

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 30/77 (38%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                 +   +       +    LT RE   L     G ++ +I+EK  ++ +TV  ++ 
Sbjct: 127 YFDSYFVDSIINKDTDLPNKLELLTNREREILIEVAKGLSNPKISEKFFITENTVKKHIN 186

Query: 211 SATVKLDAVNRIQAIAK 227
               KL+  +R +A   
Sbjct: 187 HILNKLNIKDRTEAALY 203


>gi|255526738|ref|ZP_05393640.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|255509573|gb|EET85911.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
          Length = 215

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 30/77 (38%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                 +   +       +    LT RE   L     G ++ +I+EK  ++ +TV  ++ 
Sbjct: 123 YFDSYFVDSIINKDTDLPNKLELLTNREREILIEVAKGLSNPKISEKFFITENTVKKHIN 182

Query: 211 SATVKLDAVNRIQAIAK 227
               KL+  +R +A   
Sbjct: 183 HILNKLNIKDRTEAALY 199


>gi|226939138|ref|YP_002794209.1| Response regulator [Laribacter hongkongensis HLHK9]
 gi|226714062|gb|ACO73200.1| Response regulator [Laribacter hongkongensis HLHK9]
          Length = 225

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 24/197 (12%)

Query: 43  DFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG 102
           D P RQ L   L +    + +  +       D         +       +       +  
Sbjct: 19  DEPFRQSLTFLLESSGWSTVEYDSAAAFLAADPPYPGAGCLI-------LDIRMPRMNGL 71

Query: 103 QLSVRLEGGLLPFAGIAFPV--RLGFHK-----NGYVIFTSEFLMLANEV-----IIEAH 150
           +L   L        G  FPV    G               ++FL            +E+ 
Sbjct: 72  ELYQEL-----VRRGSTFPVLFMTGHGDVELAVEAMKAGATDFLQKPFREQQLLTALESA 126

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               Q+     +  ++       LT RE     LA  G+ ++ IA +LG+S  TV+++  
Sbjct: 127 HRHGQMRQRLRDSRQQAQDRLDRLTPREYEIACLAAAGHPNKRIAAQLGISEKTVHSHRL 186

Query: 211 SATVKLDAVNRIQAIAK 227
           +   K  A N    +  
Sbjct: 187 NLMDKTGAGNLADLVRL 203


>gi|261340312|ref|ZP_05968170.1| response regulator UvrY [Enterobacter cancerogenus ATCC 35316]
 gi|288317402|gb|EFC56340.1| response regulator UvrY [Enterobacter cancerogenus ATCC 35316]
          Length = 218

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K +S    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 EKTASPFACLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|119897667|ref|YP_932880.1| transcriptional regulator [Azoarcus sp. BH72]
 gi|119670080|emb|CAL93993.1| probable transcriptional regulatory protein [Azoarcus sp. BH72]
          Length = 212

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +IE      +   D        +    +LT+RE   L L   G  +++IA+ LG+S+ T
Sbjct: 119 ALIEHCLQQERASRDKRRQEADTARRLEHLTQREREVLDLIIAGKLNKQIADVLGISIKT 178

Query: 205 VNAYLGSATVKLDAVNRIQAI 225
           V  +      K+ A +  + +
Sbjct: 179 VEVHRARVMEKMGAHSLAELV 199


>gi|330961081|gb|EGH61341.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 99

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                  +++  L   +  +S    LT R+   L L   G T++EIA +L  S HTV ++
Sbjct: 13  LLQRIQALLSGELPEPRTIASTPLTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRSH 72

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +    L A  R +A   A R G +
Sbjct: 73  VQAILTILQASCRTEAADTARRLGLV 98


>gi|313832363|gb|EFS70077.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
          Length = 218

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G T+ EIA+ L ++  TV  ++G    KL+  +R+  +  A   G 
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 234 I 234
           +
Sbjct: 218 L 218


>gi|271961819|ref|YP_003336015.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504994|gb|ACZ83272.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            + ++R      LT RE   L   G G ++ EI+ +L ++  T   ++     KL   +R
Sbjct: 138 AVPERRPQEVGGLTPREREVLACIGRGMSNAEISVELDMAEATTKTHVSRLLNKLGLRSR 197

Query: 222 IQAIAKAIRF 231
           +QA   A   
Sbjct: 198 VQAAILAQEL 207


>gi|226360785|ref|YP_002778563.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226239270|dbj|BAH49618.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 889

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E+   R+     L+ RE         G T++EIA KL LS  TV  ++     KL    R
Sbjct: 814 EVPAGRTRPEDTLSPREQEVAAHVAAGMTNKEIAAKLVLSPRTVEGHVEHILEKLGMSRR 873

Query: 222 IQ-AIAKAI 229
            + A A A 
Sbjct: 874 HEIAAAFAH 882


>gi|226307953|ref|YP_002767913.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226187070|dbj|BAH35174.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 212

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 + +   +    + +     L+++E +   L G+G T+ EI  +L L+  TV  Y
Sbjct: 126 LDSRATEALMQRIR-SDRTADPLAELSDQERAVFDLIGEGLTNREIGARLFLAEKTVKNY 184

Query: 209 LGSATVKLDAVNRIQAIAKA--IRFG 232
           +     KL    R QA   A  IR G
Sbjct: 185 VTRLLSKLGMQRRTQAAVLATEIRSG 210


>gi|194291672|ref|YP_002007579.1| response regulator, luxr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225576|emb|CAQ71522.1| putative response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 213

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +    +L+++E   +Q+   G +++EI + L +S  TV+ +      KL A + +  I
Sbjct: 143 DEAERLASLSDKELVVMQMLAKGMSNKEIGQVLFISNKTVSTHKTRVMEKLGAKSIVDVI 202

Query: 226 AKAIRFGY 233
             A R   
Sbjct: 203 DFARRHHI 210


>gi|167765236|ref|ZP_02437349.1| hypothetical protein BACSTE_03624 [Bacteroides stercoris ATCC
           43183]
 gi|167696864|gb|EDS13443.1| hypothetical protein BACSTE_03624 [Bacteroides stercoris ATCC
           43183]
          Length = 204

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 157 ITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           I   L   ++  + S    L++RE   +     G T++ IA+KL LS+HTV  +  +   
Sbjct: 116 INRLLHTEEEDEKDSEQETLSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIAR 175

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +       AI    +
Sbjct: 176 KLQIHSPAGLTIYAIVNKLV 195


>gi|146280789|ref|YP_001170942.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501]
 gi|145568994|gb|ABP78100.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501]
          Length = 218

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              ++ + +  +LT RE   L LAG G ++ EIAE+L LS HT+ +++ +   K+ A NR
Sbjct: 140 RRMRQLAESKTSLTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNR 199

Query: 222 IQAI 225
            +A 
Sbjct: 200 AEAA 203


>gi|124266219|ref|YP_001020223.1| response regulator protein [Methylibium petroleiphilum PM1]
 gi|124258994|gb|ABM93988.1| response regulator protein [Methylibium petroleiphilum PM1]
          Length = 217

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-----MLANEVIIEAHGACY--- 154
           +L+  L       A +   +          +             + ++I      C    
Sbjct: 72  ELTRLLAQRHPAVAVLVLSMYDNPEYVQQAMQAGARGYVLKDAPSADIIAAIEAVCAGGT 131

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            +     +   +  +    ++ RE+  L    DG +S++IAE+L LSV TV  +  +   
Sbjct: 132 FLSPSVSKRLFRGQAPKPLVSHRESEILACLADGLSSKQIAERLDLSVRTVETHRQNIKR 191

Query: 215 KLDAVNRIQAIAKAIRFG 232
           KL    + + I  A+  G
Sbjct: 192 KLGIEGQAELIKYAVEHG 209


>gi|330985150|gb|EGH83253.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 215

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 202 AALLLQQL 209


>gi|312194794|ref|YP_004014855.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226130|gb|ADP78985.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G  +  +   + A   +++   A  + +   L     +      L +RE     L G+G
Sbjct: 104 VGADLVGAIHAVAAGRSLLD--PAVTRRVLHRLREGPVQDPRLAPLGDREREVFHLLGEG 161

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            ++ +IA +LGLS  TV  Y+ S   KL   +R QA   A +
Sbjct: 162 LSNRQIAGRLGLSDKTVKNYVSSMLSKLRLTSRTQAAILATK 203


>gi|146277747|ref|YP_001167906.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555988|gb|ABP70601.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 219

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 27/209 (12%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L ++      I        F    +      P  +     L+ +     ++         
Sbjct: 22  LSDMKGAFLQIAQA----GF-YVALRLGFYSPEDE-----LNTFPDQFVELYTARGLALQ 71

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV--RLGFHKNGY 131
           D  +    +    + W +I     +    +             G    +  R    K  +
Sbjct: 72  DPLMRWTFTNHGALRWSAIDLPDPLGVMARY-----RQYGMRYGATMCLVGRGAVPKKSF 126

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            IF        +  II+       +  +            + LTE +   L++   G   
Sbjct: 127 GIFARADREFTDAEIIDLRELLTALHVN----------EPQTLTESQVEVLRMLSTGMRY 176

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +++A  LG+S   V A L  A  +++A  
Sbjct: 177 KQMAYALGISESAVKARLKGAAQRMNAKT 205


>gi|330811339|ref|YP_004355801.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379447|gb|AEA70797.1| Putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 208

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRN 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLV 208


>gi|288962972|ref|YP_003453266.1| two-component response regulator [Azospirillum sp. B510]
 gi|288915238|dbj|BAI76722.1| two-component response regulator [Azospirillum sp. B510]
          Length = 216

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +  A  LT ++   L    +G  +++IA ++ ++  TV A++ +   KL  + R Q
Sbjct: 138 APDPARRAATLTPQQLRVLAGIAEGKLNKQIAYEMNVAETTVKAHVTTILRKLGVLTRTQ 197

Query: 224 AIAKAIRFGY 233
           A   A +   
Sbjct: 198 AAVLASQLAL 207


>gi|282897990|ref|ZP_06305985.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281197134|gb|EFA72035.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 229

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L    S    +++ RE   L+L   G ++ EI  KL LS  TV  Y+ S   K  + NR 
Sbjct: 157 LNHPDSHILMSISTREREVLELLTHGLSNAEIGSKLYLSPRTVEKYVSSLLRKTSSNNRA 216

Query: 223 QAIAKAIRFGYI 234
           + +  AI+   +
Sbjct: 217 ELVRFAIKHDIV 228


>gi|226357955|ref|YP_002787695.1| transcriptional regulator, LuxR family [Deinococcus deserti VCD115]
 gi|226320198|gb|ACO48191.1| putative transcriptional regulator, LuxR family [Deinococcus
           deserti VCD115]
          Length = 763

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           + E      + +   LE     +  A+  LT RE   + L   G + + +A+ LG+S+ T
Sbjct: 670 LPELRTEIDRWLNLPLERNSPATPPAQGGLTSRERDVVALVAAGMSDKRVAQVLGISMGT 729

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V+ ++G    KL+  NR++    AI  G 
Sbjct: 730 VSKHVGHVLEKLELRNRVELARWAIEHGI 758


>gi|167916620|ref|ZP_02503711.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
          Length = 89

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  +  LT +E   L+L G   +++EIA  + +   TV  +L +   KLDA +R  A+
Sbjct: 17  PRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAV 76

Query: 226 AKAIRFGYI 234
            +A+  G +
Sbjct: 77  RRALVLGLL 85


>gi|330960741|gb|EGH61001.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 207

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +   +A   LT R+   L L   G T++EIA+ LG+S  TV  ++ S    L    R 
Sbjct: 136 FNESAVNALSPLTARQKQVLSLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRA 195

Query: 223 QAIA 226
            A A
Sbjct: 196 AAAA 199


>gi|307324110|ref|ZP_07603319.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890559|gb|EFN21536.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               +       LT+RE   ++    G T+EE+A  L +++ TV  +LG+   KL A NR
Sbjct: 160 RRRGRPEDLIEPLTQREREVVRRVARGRTNEEVAVDLHVTLSTVKTHLGNVQRKLAARNR 219

Query: 222 IQAIAKAIRFGYI 234
           ++  A A   G +
Sbjct: 220 VEIAAWAWEHGMV 232


>gi|262043446|ref|ZP_06016569.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259039188|gb|EEW40336.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 235

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 158 EKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL 217

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 218 THLAIRHGL 226


>gi|240172696|ref|ZP_04751355.1| two component LuxR family transcriptional regulator [Mycobacterium
           kansasii ATCC 12478]
          Length = 215

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 39/73 (53%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E+ ++   A   LTERE   + +  DG +  +IA +L L+  T+  ++ S   KL   +R
Sbjct: 142 EVTRRGRGATTLLTEREAQVITMMADGLSVPQIASRLHLARSTIKTHVHSLYEKLGVSDR 201

Query: 222 IQAIAKAIRFGYI 234
             A+A+A+R   +
Sbjct: 202 GAAVAEAMRRRLL 214


>gi|83719569|ref|YP_443189.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167582209|ref|ZP_02375083.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167620367|ref|ZP_02388998.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257139423|ref|ZP_05587685.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653394|gb|ABC37457.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 210

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 14/184 (7%)

Query: 65  PNILIETYGDDFLFHFNSGLLP---IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
              ++    D           P   +I      E        +   +  G      I   
Sbjct: 27  DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAADGLAMLSAIRDGHPSVRVIVLT 86

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-----------LFKKRSSA 170
           +         +       +L+    ++        +                L  + + A
Sbjct: 87  MLDNPVLMHTMRQAGALAVLSKRGDLDELPRAVAAVCQGRAFVGTHAGAASGLAMRATDA 146

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L+ RE   ++L   G T  +IA + G S+ TV+ +  +A  KL   + +     A  
Sbjct: 147 PPQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 206

Query: 231 FGYI 234
            G +
Sbjct: 207 NGLV 210


>gi|332666002|ref|YP_004448790.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334816|gb|AEE51917.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 207

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H A        L L K        LT+RE   ++L   G T+++IA +L ++++T+  ++
Sbjct: 123 HAAQANRHVPELTLDKLNKHLLAPLTDREFEVVRLLYAGKTNQQIAAELYIAMNTLKKHI 182

Query: 210 GSATVKLDAVNRIQAIA--KAIRFG 232
            +A  KLD  +R  A+A  +A+  G
Sbjct: 183 NNAYFKLDVGSRTTAVATLRALMVG 207


>gi|326776946|ref|ZP_08236211.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657279|gb|EGE42125.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 344

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L+ RE   + L   G ++++IA    +S  TV  ++     KL + +R +AIA
Sbjct: 277 RLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIA 330


>gi|282853480|ref|ZP_06262817.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582933|gb|EFB88313.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922223|gb|EFS86054.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965305|gb|EFT09404.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|315104424|gb|EFT76400.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329402|gb|EGE71162.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1]
          Length = 206

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                G   F  +         ++    A  + I   L   +        L++RE   L+
Sbjct: 97  RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSDREREILR 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LA  G +   IA +L LSV TV  ++ SA  K  A NR +A   A   G++
Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARHRGWL 206


>gi|270260780|ref|ZP_06189053.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044264|gb|EFA17355.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 201

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
              NG+V   S    L     IE   A            + + +    LT +E   L L 
Sbjct: 96  AGANGFVHKGSRLEQLV--QAIETVLAGEPSFPAAAMAEETQPAEGVLLTPKELQILGLL 153

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             G ++ +IAE L +S  TV+ +  +   K  A N ++ +A
Sbjct: 154 SKGLSNLQIAEMLNISNKTVSTHKKNILRKTGASNLLELVA 194


>gi|269138242|ref|YP_003294942.1| two-component response regulator EsrB, LuxR family [Edwardsiella
           tarda EIB202]
 gi|61743009|gb|AAX55229.1| EsrB [Edwardsiella tarda]
 gi|237861358|gb|ACR24241.1| EsrB [Edwardsiella tarda]
 gi|267983902|gb|ACY83731.1| two-component response regulator EsrB, LuxR family [Edwardsiella
           tarda EIB202]
 gi|304558285|gb|ADM40949.1| EsrB [Edwardsiella tarda FL6-60]
          Length = 214

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 141 LANEVIIEAHGACY--QVITDFLELFK----KRSSAARNLTERETSCLQLAGDGYTSEEI 194
               ++     A      +   L L         +    LT RE   L+L  +G  + +I
Sbjct: 113 PQQTLLAAMQHASLGKTFVDPALRLDSLVASSDMAQEPPLTLRERQILKLVAEGKRNRDI 172

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE L +S+ TV  +  +   KLDA N  +    A R G +
Sbjct: 173 AELLSISLKTVETHRLNLMRKLDAHNAAELSNWARRLGVL 212


>gi|104780420|ref|YP_606918.1| response regulator [Pseudomonas entomophila L48]
 gi|95109407|emb|CAK14107.1| putative response regulator, LuxR family [Pseudomonas entomophila
           L48]
          Length = 208

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G +++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 ERLSGREMMVLQQLARGKSNKEIADSMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRH 205

Query: 232 GY 233
           G 
Sbjct: 206 GL 207


>gi|38637927|ref|NP_942901.1| nitrate/nitrite response regulator [Ralstonia eutropha H16]
 gi|32527265|gb|AAP86015.1| nitrate/nitrite response regulator [Ralstonia eutropha H16]
          Length = 220

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   +Q    G +++EIA  LG++  TV  ++ +   KL+  +R+Q    A+   
Sbjct: 156 RLTVREREIVQELARGESNKEIARTLGVAASTVKIHVQNILKKLNLASRVQVAVYAVEHR 215

Query: 233 Y 233
            
Sbjct: 216 L 216


>gi|59712234|ref|YP_205010.1| response regulator [Vibrio fischeri ES114]
 gi|197335434|ref|YP_002156448.1| response regulator UvrY [Vibrio fischeri MJ11]
 gi|34978694|gb|AAQ83589.1| GacA [Vibrio fischeri ES114]
 gi|59480335|gb|AAW86122.1| DNA-binding response regulator in two-component regulatory system
           with GacS [Vibrio fischeri ES114]
 gi|197316924|gb|ACH66371.1| response regulator UvrY [Vibrio fischeri MJ11]
          Length = 214

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  + L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQFTPDAENPFKELSERELQIMMMITKGEKVTDISEQLNLSPKTVNSYRYRLFSKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 ISGDVELTHLAIRHGIL 209


>gi|326439852|ref|ZP_08214586.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 202

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L++A DG  + EIA +L LSV TV  YL +   KL+A NR+ AI  A   G
Sbjct: 140 PLTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESG 199

Query: 233 YI 234
           ++
Sbjct: 200 WL 201


>gi|323956264|gb|EGB52010.1| luxR family protein regulatory protein [Escherichia coli H263]
          Length = 99

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L++   G    +I+  L +S++TV  ++ +   K+ A N   AI  A R  
Sbjct: 38  PLSLRERQVLRMLAQGDEYSQISHNLNISINTVKFHVKNIKHKIQARNTNHAIHIANRNE 97

Query: 233 YI 234
            I
Sbjct: 98  II 99


>gi|293606534|ref|ZP_06688892.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815157|gb|EFF74280.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCL 182
                GY+   S    LA  V +   G                +       LT+R+   L
Sbjct: 103 RAGVAGYLPKASSPDALAAAVSLVVAGGECYPQPAGRPQGAAHAPMQELRELTQRQEEIL 162

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           QL   G T  EI + +G+SV TV ++  +   KL+A N+ +A   A++ G +
Sbjct: 163 QLLVQGKTMREIGQHVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMGLV 214


>gi|312196962|ref|YP_004017023.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228298|gb|ADP81153.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 644

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            A  +LT RE   L L  +G T+ ++A +L +S  T N ++ +   KL   NR Q
Sbjct: 578 PAVFSLTAREQEVLTLLAEGLTNAQLAAELFISERTANRHVSNIYTKLGVHNRTQ 632


>gi|157145125|ref|YP_001452444.1| hypothetical protein CKO_00858 [Citrobacter koseri ATCC BAA-895]
 gi|227885548|ref|ZP_04003353.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|237704399|ref|ZP_04534880.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300985224|ref|ZP_07177331.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|300992309|ref|ZP_07179853.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|301051392|ref|ZP_07198205.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|157082330|gb|ABV12008.1| hypothetical protein CKO_00858 [Citrobacter koseri ATCC BAA-895]
 gi|226900765|gb|EEH87024.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227837488|gb|EEJ47954.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|300296962|gb|EFJ53347.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|300306567|gb|EFJ61087.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|300406827|gb|EFJ90365.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|315286934|gb|EFU46351.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3]
 gi|315290140|gb|EFU49521.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1]
 gi|324010292|gb|EGB79511.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1]
          Length = 74

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L++   G    +I+  L +S++TV  ++ +   K+ A N   AI  A R  
Sbjct: 13  PLSLRERQVLRMLAQGDEYSQISHNLNISINTVKFHVKNIKHKIQARNTNHAIHIANRNE 72

Query: 233 YI 234
            I
Sbjct: 73  II 74


>gi|6690676|gb|AAF24244.1| Nnr [Rhodobacter sphaeroides]
          Length = 212

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 34/77 (44%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +       +  + + +   +LTER+ +       G +++ IA +L L   TV  ++ 
Sbjct: 123 RQSHGAARRPPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGELNLCESTVKVHIR 182

Query: 211 SATVKLDAVNRIQAIAK 227
           +   KL A NR +A  K
Sbjct: 183 NIMKKLGAKNRTEAAFK 199


>gi|311898486|dbj|BAJ30894.1| putative LuxR family transcriptional regulator [Kitasatospora setae
            KM-6054]
          Length = 1030

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 151  GACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                 ++ + L L  ++ + A     LT RE   L+    G ++ +IAE+L +S  T + 
Sbjct: 935  RRDAALLAERLGLGARKGAPAEEGLGLTPRERDVLRQLARGRSNRQIAEQLFISPKTASV 994

Query: 208  YLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ +   KL    R +A A A R   
Sbjct: 995  HVSNILAKLAVGGRGEAAALAHRLRL 1020


>gi|270264708|ref|ZP_06192973.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041391|gb|EFA14490.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 210

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           NLT R+   L +   G+ ++ IA +L +S  TV  ++ +   K+   +R++AI
Sbjct: 147 NLTPRQIDVLIMMMRGFPNKRIAAQLSISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|290962906|ref|YP_003494088.1| response regulator [Streptomyces scabiei 87.22]
 gi|260652432|emb|CBG75565.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 219

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                     R +TERE   L+L  +G++S EIA  L +SV TV  +  +   KL   +R
Sbjct: 145 RARAGDRLPERPITEREEEILKLVAEGHSSREIARLLVISVKTVERHRANLLHKLGLRDR 204

Query: 222 IQAIAKAIRFGY 233
           +     AIR G 
Sbjct: 205 LDLTRYAIRTGL 216


>gi|239990355|ref|ZP_04711019.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447364|ref|ZP_06586754.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350311|gb|EFE77215.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 315

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L+ RE   + L   G ++++IA    +S  TV  ++     KL +  R +AIA
Sbjct: 248 GLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSATRSEAIA 301


>gi|271965986|ref|YP_003340182.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509161|gb|ACZ87439.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 223

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNL----- 174
           L    +G+++  S    L   + + A G           L ++      S A  L     
Sbjct: 93  LRAGASGFLLKDSPPEDLLTAIRVVAAGEALLTPAATRRLIERFTATPPSPADRLPESTP 152

Query: 175 --------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                   T+RE   L     G ++ EIA  L L+  T+  +L +   K +A +R Q + 
Sbjct: 153 SRKILATLTDRERDVLARVARGMSNAEIAADLVLATSTIKTHLTNLLAKTEARDRAQLVI 212

Query: 227 KAIRFGY 233
            A   G 
Sbjct: 213 FAYESGL 219


>gi|227113251|ref|ZP_03826907.1| DNA-binding transcriptional activator UhpA [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 196

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             LT RE         G   +EIA +LGLS  TV+ +  +   KL   N ++   +
Sbjct: 136 DPLTRRERQVATKLAQGIAVKEIAAELGLSPKTVHVHRANLMEKLGVGNDVELARR 191


>gi|218754218|ref|ZP_03533014.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           GM 1503]
          Length = 898

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 810 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 869

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL   +R+Q   +A R G
Sbjct: 870 YTKLGLSSRLQLAQQAARRG 889


>gi|83648198|ref|YP_436633.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636241|gb|ABC32208.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 201

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            + + R    L+    G +++EIA+ LG+S  TV  Y+      L   NR QA+  A + 
Sbjct: 137 PSFSPRHLETLEYLTQGLSNKEIAKNLGISDITVRQYVSDIIDHLGVENRTQAVMAAKKR 196

Query: 232 GYI 234
           G I
Sbjct: 197 GII 199


>gi|26987826|ref|NP_743251.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24982525|gb|AAN66715.1|AE016299_11 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
 gi|313497456|gb|ADR58822.1| Two component LuxR family transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 207

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              +           +     L+ RE + LQ    G +++EIA+ + LS  TV+ Y    
Sbjct: 126 NQALHASRGRGAGSETDMVNRLSAREMTVLQQLARGRSNKEIADSMYLSNKTVSTYKSRL 185

Query: 213 TVKLDAVNRIQAIAKAIRFGY 233
            +KL+A + +  I  A R G 
Sbjct: 186 LLKLNARSLVDLIELAQRQGL 206


>gi|330946720|gb|EGH47657.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 88

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 15  AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 74

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 75  AALLLQQL 82


>gi|318061538|ref|ZP_07980259.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076628|ref|ZP_07983960.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 219

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G ++  IAE+LGLS  TV AY+     +L   NR++A   A   G 
Sbjct: 154 LTPREREVLVLLAGGLSNAGIAERLGLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 213


>gi|300788042|ref|YP_003768333.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797556|gb|ADJ47931.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 + +I        +           S     LT+RE   L     G T+ EI E+
Sbjct: 119 HAAATGDALIAPSVTARLLDAFAGTGSGAPSQPIEPLTDREEQVLLSVARGRTNREITEE 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           L +++ TV  ++ S   KL A NR++    A  
Sbjct: 179 LYITLSTVKTHIASLMAKLGARNRVEIAIWAHE 211


>gi|220913336|ref|YP_002488645.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219860214|gb|ACL40556.1| transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 552

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 2/161 (1%)

Query: 75  DFLFH-FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
             +          +            +  +         +P+      V +G    G   
Sbjct: 390 PMVRAVAAQADGAVRLAEADPLGACTALRRAWRLWSDLGVPYEAARCRVLIGQACLGLGD 449

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSE 192
            TS  + L+                    L  + R   A  LT RE   LQL   G  + 
Sbjct: 450 ETSADMELSAAHEALTGLGAAPAAAWAASLMPRGRGKGAGPLTPREEQVLQLVASGQGNR 509

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            IA  L LS  TV  ++ +  +KL   +R  A   A   G 
Sbjct: 510 AIAVGLFLSEKTVARHVSNIFLKLGLTSRTAATRYAFEHGL 550


>gi|118469421|ref|YP_888705.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118170708|gb|ABK71604.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 759

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A +LT +E   L+L     +  +I ++L +S++TV  +  +   KL   NR  A+A+   
Sbjct: 696 AEDLTSKELEVLRLLATRLSRRDIGQRLYVSLNTVKTHQRAIYRKLGVDNRNSAVARGRE 755

Query: 231 FGYI 234
            G +
Sbjct: 756 LGLL 759


>gi|50841545|ref|YP_054772.1| two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289424302|ref|ZP_06426085.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289427423|ref|ZP_06429136.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129584|ref|YP_003580247.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|50839147|gb|AAT81814.1| two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289154999|gb|EFD03681.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289159353|gb|EFD07544.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377074|gb|ADE00929.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313764963|gb|EFS36327.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771147|gb|EFS37113.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792510|gb|EFS40596.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803511|gb|EFS44693.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806915|gb|EFS45413.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811827|gb|EFS49541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814163|gb|EFS51877.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815476|gb|EFS53190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817698|gb|EFS55412.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821475|gb|EFS59189.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824580|gb|EFS62294.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826251|gb|EFS63965.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829041|gb|EFS66755.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313832822|gb|EFS70536.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313839682|gb|EFS77396.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916271|gb|EFS80102.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917541|gb|EFS81372.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921874|gb|EFS85705.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926277|gb|EFS90108.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314955212|gb|EFS99617.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959216|gb|EFT03318.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961718|gb|EFT05819.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964222|gb|EFT08322.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969024|gb|EFT13122.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314975255|gb|EFT19350.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977670|gb|EFT21765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314985145|gb|EFT29237.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314990454|gb|EFT34545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078871|gb|EFT50889.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315081685|gb|EFT53661.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083141|gb|EFT55117.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086668|gb|EFT58644.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315097105|gb|EFT69081.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099710|gb|EFT71686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102251|gb|EFT74227.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315107664|gb|EFT79640.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|315109807|gb|EFT81783.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327332558|gb|EGE74293.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327333731|gb|EGE75448.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327334616|gb|EGE76327.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
 gi|327444410|gb|EGE91064.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327446663|gb|EGE93317.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448894|gb|EGE95548.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327454307|gb|EGF00962.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456372|gb|EGF03027.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457356|gb|EGF04011.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328756067|gb|EGF69683.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757917|gb|EGF71533.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328758912|gb|EGF72528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328759757|gb|EGF73353.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
 gi|332674453|gb|AEE71269.1| two-component response regulator [Propionibacterium acnes 266]
          Length = 218

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L     G T+ EIA+ L ++  TV  ++G    KL+  +R+  +  A   G 
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 234 I 234
           +
Sbjct: 218 L 218


>gi|73539827|ref|YP_294347.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72117240|gb|AAZ59503.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 210

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178
           +R G           + L+ A   + +        + D L     +       + L+ERE
Sbjct: 94  IRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSAAVADLLIGGLDKPTEQPVHQMLSERE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                    G +   IA++L LSV TV+ Y      K+           AI+ G +
Sbjct: 154 FQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209


>gi|307823586|ref|ZP_07653815.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
 gi|307735571|gb|EFO06419.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
          Length = 297

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLT RE   L+L   GY ++EIA+ L +S+ TV  +  +   K +A N    ++ A + G
Sbjct: 152 NLTSREAQLLKLIAAGYKNKEIADSLCISLKTVETHRATLMRKFNAHNVATLLSVANQAG 211


>gi|284046774|ref|YP_003397114.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950995|gb|ADB53739.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 992

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 3/110 (2%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQ 183
            + G      E   LA    +    A         +     S A      LT RE   L 
Sbjct: 880 QRLGAAWLVGEVDALAARARLSLDDAGSSPAAARGDGAAGGSPAEADPFGLTPRERQVLT 939

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L   G T+ EI   L ++  T + ++     KLD  +R QA A A R G 
Sbjct: 940 LVASGATNREIGSALFMAEKTASVHVSRILAKLDVRSRTQAAAVAHRLGL 989


>gi|282866538|ref|ZP_06275581.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282558585|gb|EFB64144.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 220

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183
                  + T     + +                        S     R L+ RE   L+
Sbjct: 109 AGGVKGYVVTGTRTNIGHPGRPGMAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLR 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G +++ I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|206564661|ref|YP_002235424.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198040701|emb|CAR56687.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 214

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|167567044|ref|ZP_02359960.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167574121|ref|ZP_02366995.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 215

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGLAARMIHASAEASPLDRLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 159 ERDILDALAQGLSSKQIAQQNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|160938403|ref|ZP_02085758.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438776|gb|EDP16533.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                     D+  L   ++     LT+ E   +     G ++ EIAE L LS  TV  Y
Sbjct: 134 LRLFSQMAQADYSILVGDKN--VDELTKTEWKIIAQVEVGASNREIAEALKLSEGTVRNY 191

Query: 209 LGSATVKLDAVNRIQAIAKAIR 230
           L +   KLD  +R Q    A++
Sbjct: 192 LSTILNKLDLRDRTQLAIWAVQ 213


>gi|110804545|ref|YP_688065.1| transcriptional regulator FimZ [Shigella flexneri 5 str. 8401]
 gi|110614093|gb|ABF02760.1| fimbrial Z protein [Shigella flexneri 5 str. 8401]
          Length = 226

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L+ RE + L+    G +++EIA+KL LS  TV+A+  +   KL   + ++ I  A
Sbjct: 171 LSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIRLA 225


>gi|29833873|ref|NP_828507.1| LuxR family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610998|dbj|BAC75042.1| putative LuxR-family transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 900

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           + +  +     L+ RE   LQ   +  ++EEIA  L +SV+TV  +L S   KL    R 
Sbjct: 829 VDQPPAPVVEELSGREREVLQRLAEMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVNRRH 888

Query: 223 QAIAKAIRFGYI 234
            A+ +A     +
Sbjct: 889 DAVRRARELRLL 900


>gi|1934734|emb|CAA73019.1| FlcA [Azospirillum brasilense]
          Length = 215

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A  LT+R+   L     G ++++IA +LGLS  TV  ++ +    L   NR Q
Sbjct: 153 AYGLTQRQREVLDCLRAGKSNKQIAYELGLSEGTVKIHVTAIFKSLGVKNRTQ 205


>gi|71733679|ref|YP_275938.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257487038|ref|ZP_05641079.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289625994|ref|ZP_06458948.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289651490|ref|ZP_06482833.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298488235|ref|ZP_07006270.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71554232|gb|AAZ33443.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157243|gb|EFH98328.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323080|gb|EFW79169.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329648|gb|EFW85637.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330868582|gb|EGH03291.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330878032|gb|EGH12181.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|331009320|gb|EGH89376.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 215

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 202 AALLLQQL 209


>gi|302036473|ref|YP_003796795.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604537|emb|CBK40869.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G   Q +    +  +        LT+RE   L  A  G +++EIA++L +S+ TV  +L 
Sbjct: 133 GFAKQAVALVNKQEELSGGGLSLLTDREHEMLACAAAGRSNKEIADQLCVSLDTVKTHLH 192

Query: 211 SATVKLDAVNRIQAI 225
               KL    R++A+
Sbjct: 193 HIYQKLRVSGRVEAV 207


>gi|294817012|ref|ZP_06775654.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294321827|gb|EFG03962.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 348

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 16/234 (6%)

Query: 2   SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61
           S    + ++   +  +   +    +  +     ++    A      Q       +  LD 
Sbjct: 128 SGPVSSVRELRGIDAVQTCVEKACHECR-EEIQVFVPGGA------QPGDVLASSQPLDL 180

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +      +Y             P   +     E   E      + L   +        
Sbjct: 181 LLLERSARVSY---VYQGSIRNDRPTSEYAQWLVEQGAEVRTVPHLPLRVIIWDRRTALV 237

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P+       G  + +S   + A + + E                ++       L ++E++
Sbjct: 238 PIDPAAPDAGAFLLSSPGPVAALQSLFEQVWQRAARFG-----EERDRERDGALADQESA 292

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L   G T E IA KLG+SV T      +   +L A +R Q  A A   G++
Sbjct: 293 VLGLLAAGLTDEVIARKLGVSVRTSRRVTAALMNRLGARSRFQLGALAAERGWL 346


>gi|227539554|ref|ZP_03969603.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240619|gb|EEI90634.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 130

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   +QL  DG+ S+ I+EKL +S +TV  +      KL+  N +  +  A+++ 
Sbjct: 69  RLTNREIQIIQLICDGHNSKVISEKLFISFNTVETHRKHIFQKLNIKNSLGLLRLALQYD 128

Query: 233 YI 234
            I
Sbjct: 129 LI 130


>gi|256374257|ref|YP_003097917.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255918560|gb|ACU34071.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 209

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETS 180
              +GY++       L + V   A G           + ++            LTE+E  
Sbjct: 97  AGASGYLLKQVRGQDLVHAVREVAAGRSLLDPVTTSRVLERMRKPQEPDELATLTEQERR 156

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L L G+G ++ +IAE+L ++  TV  ++ +   KL    R QA A   R G
Sbjct: 157 VLSLIGEGLSNRQIAERLFVAEKTVKNHVTAVLSKLGMERRTQAAAWVARRG 208


>gi|239625806|ref|ZP_04668837.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520036|gb|EEQ59902.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 252

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            LTERE   L+L   G +++EI EKL +S  TV  +  +   K    +R Q 
Sbjct: 194 ELTEREEEILKLLSHGASTQEICEKLVISTSTVKKHTYNIYNKTGVKSRTQL 245


>gi|213962803|ref|ZP_03391063.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
 gi|213954460|gb|EEB65782.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
          Length = 214

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT RE   L LA +G  S+EI+EKL +S+HTVN +  +   KL   N I+AI 
Sbjct: 161 LTPREREILALAKEGMFSKEISEKLNISIHTVNRHRQNILEKLQVDNIIEAIR 213


>gi|171915297|ref|ZP_02930767.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 229

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 48/152 (31%), Gaps = 16/152 (10%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF------------- 138
           +  E    +  +L  RL G L+  A +   V     K    +                  
Sbjct: 71  VDLELPAMNGAELISRLAGKLICAAFVVLTVHDDSAKVFAALRAGAHGYLLKGSKPGEIL 130

Query: 139 ---LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                 +      +      +I  F E  K        LT RE   L+    G   +E+A
Sbjct: 131 AGIRAASEGGAPLSQEISRLLIQSFQEPPKVEKRTIPGLTPREAQILERLAQGMAPKEVA 190

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             L LS  TV  YL     KL   +R +A+ K
Sbjct: 191 YDLSLSYETVRDYLKGVYQKLHVRSRTEAVIK 222


>gi|154252823|ref|YP_001413647.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154156773|gb|ABS63990.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 208

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNLTE 176
            P+ +   K G + F ++      + +I+A     ++       L    +  S    LT 
Sbjct: 89  VPMSVAAMKAGAIEFLTK--PFREQELIDAVHRGVEIDRERRAALTSLAELRSRFETLTP 146

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           RE   + L   G  +++IA +L LS  TV  +      K+ A      +  A R 
Sbjct: 147 REREIIALVVTGQMNKQIAAELNLSEVTVKVHRAQVMRKMQAKTLPDLVRYADRL 201


>gi|111225726|ref|YP_716520.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111153258|emb|CAJ65009.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 203

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 151 GACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           G    V+ +     +    + +   LT RE   L+L   G ++ + A +LG+S  TV  +
Sbjct: 115 GLAALVLGEMSRAARDVTATPSTPRLTAREIEVLRLIAKGLSARDAAARLGVSHRTVQNH 174

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   KL   NR++    A+R GY
Sbjct: 175 VHNVLGKLQLRNRVELTRFALREGY 199


>gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 220

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 162 ELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           EL  + +  A       LT RE   L L   G  ++EIA +L  S   V  Y+     K 
Sbjct: 136 ELNHRPAPVAIEAIDLDLTPREQEVLLLVYAGLMNKEIAGRLERSTRNVEKYVSRLLAKT 195

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R + +  A+  G +
Sbjct: 196 GTSSRTELVRFALEHGLV 213


>gi|307129346|ref|YP_003881362.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Dickeya dadantii 3937]
 gi|306526875|gb|ADM96805.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Dickeya dadantii 3937]
          Length = 196

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
           L     G++        L   V   A G CY      L+L   R      LT RE    +
Sbjct: 91  LNAGARGFLSKRCSPDELIAAVRTVAGGGCYLTPDIALKLASGRR---DPLTRRERQVAE 147

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               G   + IA +LGLS  TV+ +  +   KL   N ++   +
Sbjct: 148 KLAQGMVVKAIAAELGLSPKTVHVHRANLMEKLGVNNDVELARR 191


>gi|240142741|ref|YP_002967254.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Methylobacterium extorquens AM1]
 gi|240012688|gb|ACS43913.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Methylobacterium extorquens AM1]
          Length = 220

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEF 138
               +       +  +L+ R+ G       +   V          L     GY++  S  
Sbjct: 51  DVAVVDVSMPGLNGLELTERVAGECPGTRVLVLTVHEDAAYVQPLLRAGARGYLLKRSAA 110

Query: 139 LMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYT 190
             L   V   A G            + D   +       A   L+ RET  L+L   G++
Sbjct: 111 DDLLRAVRAVASGGIYLDPSIAGHALADPSSVGGPGPGEAGEALSPRETEVLRLIAQGFS 170

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++EIA ++ LSV +V  Y   A  KL    R + I  A   G++
Sbjct: 171 NKEIARRIDLSVKSVETYKARAAEKLGLRTRAEIIRYAAAQGWL 214


>gi|271967578|ref|YP_003341774.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510753|gb|ACZ89031.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 162 ELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            L ++R     +    LTERE   + +   G T+ EIA +L LS  TV  ++ S   K  
Sbjct: 131 RLLRRRGLPQESSSVVLTEREDQIVAMVAHGMTNAEIAAELFLSPGTVKNHIASVQNKTG 190

Query: 218 AVNRIQAIAKAIRFG 232
             NR+   A A   G
Sbjct: 191 TRNRVAIAAWAWATG 205


>gi|77460736|ref|YP_350243.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77384739|gb|ABA76252.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 208

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRN 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLV 208


>gi|84502331|ref|ZP_01000479.1| two-component response regulator [Oceanicola batsensis HTCC2597]
 gi|84389691|gb|EAQ02410.1| two-component response regulator [Oceanicola batsensis HTCC2597]
          Length = 213

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           + +     A  + I     L    +     LT+RE   L L G G  + E+A +LG++V 
Sbjct: 120 DGVPALSPAIARRIMHHFRLTGPLTGQDAALTDREREVLGLIGRGLRNAEVAAELGIAVS 179

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           TV  Y+     KL   +R +A   A R G 
Sbjct: 180 TVAGYVKDTYRKLGISSRAEAAWHATRLGL 209


>gi|313498051|gb|ADR59417.1| GacA [Pseudomonas putida BIRD-1]
          Length = 193

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGACYQVITDF-LELFKKRSSAARNL 174
           FP RL        +     L    + I  A         Q+     L+ F+ + S    L
Sbjct: 70  FPTRLLQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLALKPFQPQGSPFDAL 129

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +ERE     +       + I++KL LS  TVN Y      KL   + ++    A+R G +
Sbjct: 130 SEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 189


>gi|262225461|ref|YP_003280952.1| pCQ3_103 [Streptomyces sp. W9]
 gi|261597637|gb|ACX85604.1| pCQ3_103 [Streptomyces sp. W9]
          Length = 113

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
                 L +  +     +T R+   L+L  +G T+  IA +LG+S +TV   + S   KL
Sbjct: 13  HHHLKVLPRHPADPRYTVTRRQLDILRLIANGNTTTAIARRLGISYNTVTKQVASIHRKL 72

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R QA+A A+R G +
Sbjct: 73  RVSDRAQAVAVALRMGLL 90


>gi|229526804|ref|ZP_04416208.1| transcriptional regulatory protein UhpA [Vibrio cholerae bv.
           albensis VL426]
 gi|229336962|gb|EEO01980.1| transcriptional regulatory protein UhpA [Vibrio cholerae bv.
           albensis VL426]
          Length = 208

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGY 131
           FH  +    +    I      E+   L  RL      F  I   +             G 
Sbjct: 40  FHALTQAE-VDVAIIDISMPDENGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGA 98

Query: 132 VIFTSEFLMLA------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
             + S+    +        V       C   + +        ++   +LT+RE     L 
Sbjct: 99  QGYLSKRCGPSELVSAIRTVASGRRYLCADALVNLS--NPDINNVLADLTKREVEVFDLL 156

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G   +EIA+ L LS   V+ +  +   KL+  N +  I  A++   +
Sbjct: 157 VQGKEVKEIAQTLFLSHKAVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|149371877|ref|ZP_01891196.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355017|gb|EDM43578.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 223

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L+L    +T+ EI EKL +S  TV  +  +  +K D  N    +  AI+   
Sbjct: 157 LSKRELEVLELICQQFTTVEIGEKLYISRRTVEVHRNNLLLKTDVKNVAGLVIYAIQHNL 216

Query: 234 I 234
           +
Sbjct: 217 V 217


>gi|85713863|ref|ZP_01044852.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
 gi|85698989|gb|EAQ36857.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
          Length = 216

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEI 194
               +++ II+   A  ++  +                 LT RE   L     G +++E+
Sbjct: 110 EKPFSSDAIIDRVRAAVKMWRETRGSESDGLANFPGRHLLTCREREVLSQVARGASNKEV 169

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             KLG+S  TV  +      KL A N    I  
Sbjct: 170 GRKLGISPRTVEVHRARIMDKLGAKNTADLIRI 202


>gi|94313944|ref|YP_587153.1| LuxR family LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357796|gb|ABF11884.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Cupriavidus metallidurans CH34]
          Length = 947

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 15/178 (8%)

Query: 65  PNILIETYGDDFLFHFNSG-----LLPIIWQSIQEETVIESSGQLSVRLEG--GLLPFAG 117
                       +           L  + W +   +  + +      R+          G
Sbjct: 762 DPAKAAAAVGPLIDQCQRRGWQRHLAQMQWMAALADHRLGNDASARERVLAALRAGHRLG 821

Query: 118 IAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ 170
           +   +          I   ++    A + ++  + +  +       +   R++A      
Sbjct: 822 LVRSLLDVDPGALDEIAALAQQPGEAPDPLLAFYISRLRATGATNPMTSARAAAPATLRT 881

Query: 171 -ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            A  L+ERE   ++L G    +++IA  LGLS  TV  +L +   KL   +R +A+A+
Sbjct: 882 LAEPLSEREADVVELLGQALPNKKIARTLGLSPETVKWHLRNIFRKLGVTSRDEAVAR 939


>gi|253574622|ref|ZP_04851962.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845668|gb|EES73676.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 247

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            S     TERE   +     G +++EIA+++ +S  TV  Y+ S   K    +R Q    
Sbjct: 181 PSDLERFTERELEVMSRIAKGLSNKEIAKEIFISEGTVANYITSILNKTGLEHRTQIAIY 240


>gi|255533126|ref|YP_003093498.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255346110|gb|ACU05436.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 263

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L    +G +S+ IA+KL +S HTV  +  S   K +  N +  ++  I+ G 
Sbjct: 203 LSKREKEVLLWMAEGLSSKLIADKLFISEHTVINHRRSMQDKTNTPNAVALVSFCIKNGL 262

Query: 234 I 234
           I
Sbjct: 263 I 263


>gi|327393400|dbj|BAK10822.1| response regulator UvrY [Pantoea ananatis AJ13355]
          Length = 167

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 89  QKAESPFSCLSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 148

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 149 THLAIRHGL 157


>gi|304409083|ref|ZP_07390704.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307303086|ref|ZP_07582841.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304352904|gb|EFM17301.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306913446|gb|EFN43868.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 220

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K +S   +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA
Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 225 IA 226
           + 
Sbjct: 206 VI 207


>gi|226363271|ref|YP_002781053.1| serine/threonine protein kinase [Rhodococcus opacus B4]
 gi|226241760|dbj|BAH52108.1| putative serine/threonine protein kinase [Rhodococcus opacus B4]
          Length = 1084

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 7/148 (4%)

Query: 92   IQEETVIESSGQLSVRLEGGLLPFAG---IAFP----VRLGFHKNGYVIFTSEFLMLANE 144
            I  +T       + +     L   AG   + FP     R    ++ Y       +  A  
Sbjct: 934  IAADTGDAKRAVVLMAAADELGRTAGSPTVGFPHLLVAREESEQSAYQALGKSSVESARR 993

Query: 145  VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
                              L      +   LT+RE    +L  +G T+  IA +L +S  T
Sbjct: 994  EGRRLGFHAAIAYALGERLPDATGDSLVKLTKRERQVAELIAEGLTNRAIAARLVISPRT 1053

Query: 205  VNAYLGSATVKLDAVNRIQAIAKAIRFG 232
               ++     KL   +R Q  A  +  G
Sbjct: 1054 AQGHVEHVLTKLGFTSRAQIAAWIVEQG 1081


>gi|217973035|ref|YP_002357786.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217498170|gb|ACK46363.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 220

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K +S   +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA
Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 225 IA 226
           + 
Sbjct: 206 VI 207


>gi|91784340|ref|YP_559546.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91688294|gb|ABE31494.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 210

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEE 193
           + ++ A   +   H    + + D L     + +       L+ERE         G    E
Sbjct: 109 DEIVRAIRAVARGHRYLSEAVADTLADNLDKPAVGRPHEALSEREFQIFCKLAAGQIPTE 168

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IAE+L LSV TV+ Y      K+   N       AI+ G I
Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209


>gi|333027679|ref|ZP_08455743.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332747531|gb|EGJ77972.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 215

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-----------HGACYQVITDFLELFKKRSSAAR 172
           L    +G+++  S +  L   V   A                  ++       +  +  R
Sbjct: 95  LAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRIIEGHLSGRRRPSDQDLARLR 154

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           +LTERE   L+L  DG ++ EIA++L +S+HTV  ++     K    +R QA   A 
Sbjct: 155 DLTEREVDVLRLIRDGLSNAEIADRLVVSLHTVKTHVSRVLTKTGCQSRAQAAVLAR 211


>gi|332879917|ref|ZP_08447602.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682128|gb|EGJ55040.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 218

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 34/60 (56%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S+    LT RE     LA +G  S+EI+EKL +S+HTVN +  +   KL   N I+AI 
Sbjct: 158 ESATDALLTPREREIFALAKEGMFSKEISEKLNISIHTVNRHRQNILEKLQVDNIIEAIR 217


>gi|330966354|gb|EGH66614.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 207

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +   +A   LT R+   L L   G T++EIA++LG+S  TV  ++ S    L    R 
Sbjct: 136 FNESAVNALSPLTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRS 195

Query: 223 QAIA----KAIR 230
            A A     AIR
Sbjct: 196 AAAAQFSSLAIR 207


>gi|323497473|ref|ZP_08102491.1| transcriptional regulator, LuxR family protein [Vibrio sinaloensis
           DSM 21326]
 gi|323317556|gb|EGA70549.1| transcriptional regulator, LuxR family protein [Vibrio sinaloensis
           DSM 21326]
          Length = 223

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 36/101 (35%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                         +    +        ++++D              LT+RE   L+   
Sbjct: 112 QDAPIEHLLRSLEAVEQGDLWLPRKLMVKMLSDIRPYALTYQDINTTLTKREQQTLERLV 171

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            G ++ EIAE L ++  TV  ++     KL+   R +AI K
Sbjct: 172 QGQSNLEIAEALFVAESTVKTHVYKLFKKLNVRCRKEAIHK 212


>gi|320106448|ref|YP_004182038.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924969|gb|ADV82044.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 224

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
               GY++ T     L  + I   HG    V T+       R  ++  L+ RE   L+  
Sbjct: 116 AGAVGYLLKTMLRKEL-AQAIRAVHGGLRYVPTEIAS-ELTRHFSSEALSARELEVLRSV 173

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G++++ +A+KL +S  TV  ++ +   KL A +R+ A+  A+R G +
Sbjct: 174 SRGWSNKIVADKLAISEDTVKGHMRTILAKLGANDRLDAVMTALRRGIL 222


>gi|307727953|ref|YP_003911166.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588478|gb|ADN61875.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003]
          Length = 494

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                R++    L+ RE   L++   G +++E A +L +S  TV  ++ S   KLD   R
Sbjct: 422 RRSATRATQGARLSAREMDVLRMISRGASNKEAARELAMSPSTVRTHVESMFRKLDCSTR 481

Query: 222 IQAIAKAIRFGYI 234
             A  KA   G +
Sbjct: 482 AAATLKASALGLL 494


>gi|261252640|ref|ZP_05945213.1| BarA-associated response regulator UvrY [Vibrio orientalis CIP
           102891]
 gi|260936031|gb|EEX92020.1| BarA-associated response regulator UvrY [Vibrio orientalis CIP
           102891]
          Length = 188

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 107 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 166

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G I
Sbjct: 167 ISGDVELTHLAIRHGMI 183


>gi|258622635|ref|ZP_05717656.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
 gi|258585091|gb|EEW09819.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
          Length = 227

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 146 MALSQFSPASENPFADLSERELQIMLMITKGQKVTEISEQLSLSPKTVNSYRYRLFAKLN 205

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 206 INGDVELTHLAIRHGIL 222


>gi|238756486|ref|ZP_04617792.1| Response regulator uvrY [Yersinia ruckeri ATCC 29473]
 gi|238705302|gb|EEP97713.1| Response regulator uvrY [Yersinia ruckeri ATCC 29473]
          Length = 206

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 121 MALSQLEPQVDTPFACLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 180

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 181 ISGDVELTHLAIRHGL 196


>gi|256827745|ref|YP_003151704.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583888|gb|ACU95022.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 472

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G+  +                 +          + K  S     LT RE   L   G G
Sbjct: 367 FGWESWQRITQEARPNDADNNQASSASFSRGLPRIPKSLS---DKLTNRENEILVFLGRG 423

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           Y+   IAEKL +S  TV  ++     KL   +R    A 
Sbjct: 424 YSISYIAEKLFISESTVRTHVKHIYAKLGIHSREDLFAL 462


>gi|226362430|ref|YP_002780208.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240915|dbj|BAH51263.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 937

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 6/176 (3%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
            +  +    L     D       + +    W +   +    S+   +    G       +
Sbjct: 759 SELLEQGLRLARLADDPV--GCANCVEVYAWIAGPNDPRRASTLMGAAEALGRAAGSPSV 816

Query: 119 AFP----VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
             P          ++   + T+     + +                    K  S  + +L
Sbjct: 817 YIPDLLIYHQECERSARRMLTAHAFEESRQHGRAMDIDSAMAYALGERPHKPPSPGSHHL 876

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           T+RE    +L  +G T++ IA +L +S  T   ++     KL   +R Q  A  + 
Sbjct: 877 TKREQQVAELIAEGLTNKAIAARLVISQRTAQGHVEHILTKLGFTSRAQVAAWVVE 932


>gi|223940108|ref|ZP_03631971.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891210|gb|EEF57708.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 219

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                L  RE   L+L   G   ++IA ++ LS+ T+  Y+     KL    R  A+ K
Sbjct: 146 PLIEKLAPREQQVLELLSKGRAYKQIAAEMNLSMGTIRTYIRRIYEKLHVNCRTDAVVK 204


>gi|146297938|ref|YP_001192529.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
 gi|146152356|gb|ABQ03210.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
          Length = 256

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L+LA  G  S +IA  L +SV+TV  +  +   K+   N  +A+  A+  G 
Sbjct: 194 LSKRELEILKLAAKGNNSGQIAGFLNISVYTVRRHRQNIIQKMQVSNTTEALRTALVMGL 253

Query: 234 I 234
           I
Sbjct: 254 I 254


>gi|75675221|ref|YP_317642.1| response regulator FixJ [Nitrobacter winogradskyi Nb-255]
 gi|74420091|gb|ABA04290.1| two component transcriptional regulator, LuxR family [Nitrobacter
           winogradskyi Nb-255]
          Length = 205

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +  +  S    L++RE   +     G +++ IA +  +S  T+  Y  +   K+ A N 
Sbjct: 131 SISAEIVSRIATLSQRERQVMDGLVAGLSNKLIAREHNISPRTIEVYRANVMTKMQAHNL 190

Query: 222 IQAIAKAIRFGYI 234
            + I  A+R G +
Sbjct: 191 SELIRLALRAGIL 203


>gi|160875718|ref|YP_001555034.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160861240|gb|ABX49774.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315267907|gb|ADT94760.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 220

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K +S   +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA
Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 225 IA 226
           + 
Sbjct: 206 VI 207


>gi|94497083|ref|ZP_01303656.1| two component transcriptional regulator, LuxR family protein
           [Sphingomonas sp. SKA58]
 gi|307296677|ref|ZP_07576496.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|94423455|gb|EAT08483.1| two component transcriptional regulator, LuxR family protein
           [Sphingomonas sp. SKA58]
 gi|306877806|gb|EFN09031.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 207

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGL 200
               GA  +      ++  +    +        LT RE   L+   +G  ++ IA  LG 
Sbjct: 110 AALLGAVSRAFARLDDVDFRTLETSEAGVRVAALTPREREVLEGLANGLPNKTIAYDLGC 169

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           S  TV  +  S   KL+  N  +A+  A   G 
Sbjct: 170 SSRTVEVHRASLMAKLEVRNLSEALRIAFAAGM 202


>gi|16760893|ref|NP_456510.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765285|ref|NP_460900.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141415|ref|NP_804757.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62180520|ref|YP_216937.1| response regulator [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161613492|ref|YP_001587457.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167552826|ref|ZP_02346577.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993515|ref|ZP_02574609.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168234117|ref|ZP_02659175.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168239182|ref|ZP_02664240.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244793|ref|ZP_02669725.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168259770|ref|ZP_02681743.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168462515|ref|ZP_02696446.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822986|ref|ZP_02834986.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194451039|ref|YP_002045998.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194470909|ref|ZP_03076893.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194733956|ref|YP_002114980.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197247624|ref|YP_002146076.1| response regulator [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197265053|ref|ZP_03165127.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198242641|ref|YP_002215139.1| response regulator [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200389754|ref|ZP_03216365.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930976|ref|ZP_03221802.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205352357|ref|YP_002226158.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856538|ref|YP_002243189.1| response regulator [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213053516|ref|ZP_03346394.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213421440|ref|ZP_03354506.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213426359|ref|ZP_03359109.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213580418|ref|ZP_03362244.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213650333|ref|ZP_03380386.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213857577|ref|ZP_03384548.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|238912480|ref|ZP_04656317.1| response regulator [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289824069|ref|ZP_06543667.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25298759|pir||AE0749 invasion response-regulator sirA [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|1815641|gb|AAC44801.1| SirA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|2992526|gb|AAC08300.1| SirA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420481|gb|AAL20859.1| putative LuxR/UhpA family response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16503190|emb|CAD05696.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137042|gb|AAO68606.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128153|gb|AAX65856.1| putative response regulator (LuxR/UhpA familiy) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161362856|gb|ABX66624.1| hypothetical protein SPAB_01209 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409343|gb|ACF69562.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194457273|gb|EDX46112.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194709458|gb|ACF88679.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195634097|gb|EDX52449.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197211327|gb|ACH48724.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243308|gb|EDY25928.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288050|gb|EDY27437.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937157|gb|ACH74490.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602199|gb|EDZ00745.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320020|gb|EDZ05225.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205272138|emb|CAR36991.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205322666|gb|EDZ10505.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328417|gb|EDZ15181.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205331883|gb|EDZ18647.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336342|gb|EDZ23106.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340682|gb|EDZ27446.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205350674|gb|EDZ37305.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708341|emb|CAR32644.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247112|emb|CBG24935.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993933|gb|ACY88818.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158462|emb|CBW17972.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912937|dbj|BAJ36911.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320085435|emb|CBY95216.1| Response regulator gacA Global activator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224589|gb|EFX49652.1| BarA-associated response regulator UvrY [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616941|gb|EFY13849.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618181|gb|EFY15073.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625851|gb|EFY22670.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626303|gb|EFY23113.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632718|gb|EFY29463.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639060|gb|EFY35753.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640501|gb|EFY37154.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645990|gb|EFY42507.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649889|gb|EFY46310.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655497|gb|EFY51805.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660275|gb|EFY56513.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662956|gb|EFY59163.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668141|gb|EFY64300.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674099|gb|EFY70193.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675548|gb|EFY71622.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683040|gb|EFY79056.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686734|gb|EFY82712.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322714996|gb|EFZ06567.1| response regulator [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130226|gb|ADX17656.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195377|gb|EFZ80557.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199268|gb|EFZ84363.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204433|gb|EFZ89439.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207523|gb|EFZ92471.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211848|gb|EFZ96679.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217508|gb|EGA02227.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219584|gb|EGA04068.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323223586|gb|EGA07901.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231530|gb|EGA15643.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235973|gb|EGA20052.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240543|gb|EGA24586.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245435|gb|EGA29435.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323250205|gb|EGA34097.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253984|gb|EGA37808.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255489|gb|EGA39250.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262086|gb|EGA45649.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266209|gb|EGA49699.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270682|gb|EGA54123.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326622888|gb|EGE29233.1| response regulator [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326627408|gb|EGE33751.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332988836|gb|AEF07819.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 218

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 129 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209


>gi|67640400|ref|ZP_00439208.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
 gi|134281909|ref|ZP_01768616.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|167900009|ref|ZP_02487410.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|226199200|ref|ZP_03794760.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|251768095|ref|ZP_02269470.2| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|134246971|gb|EBA47058.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|225928607|gb|EEH24634.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|238521110|gb|EEP84564.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
 gi|243060824|gb|EES43010.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
          Length = 202

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 86  VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 145

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 146 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 199


>gi|220910204|ref|YP_002485515.1| GAF modulated LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866815|gb|ACL47154.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 237

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 70/233 (30%), Gaps = 38/233 (16%)

Query: 10  KSSSLQELSP-RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++  LQEL    L  +     A  + L+  +   D   +  L   L              
Sbjct: 13  QAQDLQELRSQVLPRLGEYFVATRWGLFFFDQLPDSRFQPLLNLALS------------- 59

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                +  L +      P+      E  V+       +           +A P+      
Sbjct: 60  --LEHNPVLRYLVERHAPVH-----EGLVVSPQAWQLLCPRTDH--RHVMAGPLVKHGKL 110

Query: 129 NGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAA-------------RN 173
            G + FT    +     + + +  G C  + T          S               + 
Sbjct: 111 VGGLGFTRSHTLAAFDRDNLADLSGLCLHLSTWIATGRSIPPSPLAANPPQAWANRRPQR 170

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT RET   QL   G T+  I  +L ++ ++V   L     KL   NR + IA
Sbjct: 171 LTRRETQIAQLVAMGKTNAAIGAELWITENSVKQALKRMFQKLQVSNRAEMIA 223


>gi|213614409|ref|ZP_03371235.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 88

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 32/54 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT +E   + +  +G +++ IA +L +S+ TV  +L +   K + +NR + +++
Sbjct: 23  LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 76


>gi|37223208|gb|AAQ90200.1| LuxR [Aliivibrio fischeri]
          Length = 192

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 11/176 (6%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
            S  +++  L  +   +   +   Y +         +  I  L NY        +     
Sbjct: 22  RSNNDINQCLSDMTKMV---HCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLI 78

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
             D  + + NS   PI W  I E   +       ++         G +FP+    +  G 
Sbjct: 79  KYDPIVDYSNSNHSPINWN-IFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 132 VIFTSEFLMLANEVIIEAH------GACYQVITDFLELFKKRSSAARNLTERETSC 181
           + F         + +   H           ++ ++ ++    + +  +LT+RE  C
Sbjct: 138 LSFAHSEKDNYIDSLF-LHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKEC 192


>gi|229495080|ref|ZP_04388826.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis
           SK121]
 gi|3319301|gb|AAC26219.1| CprR [Rhodococcus sp. NO1-1]
 gi|229318011|gb|EEN83886.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis
           SK121]
          Length = 212

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 + +   +    + +     L+++E +   L G+G T+ EI  +L L+  TV  Y
Sbjct: 126 LDSRATEALMQRIR-SDRTADPLAELSDQERAVFDLIGEGLTNREIGARLFLAEKTVKNY 184

Query: 209 LGSATVKLDAVNRIQAIAKAIR 230
           +     KL    R QA   A  
Sbjct: 185 VTRLLSKLGMQRRTQAAVLATE 206


>gi|330502238|ref|YP_004379107.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328916524|gb|AEB57355.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 216

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  TV A++ +   KL    R Q
Sbjct: 143 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATVKAHVTAIFRKLGVRTRTQ 202

Query: 224 AIAK 227
           A   
Sbjct: 203 AALL 206


>gi|330822044|ref|YP_004350906.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
 gi|327374039|gb|AEA65394.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
          Length = 215

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++     ++       + +   +      +     LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPASDIVRGIGAVLAGQTFFSEGLAARMIQASAGAGPVERLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA + GLSV TV  +  +   KL    + + I  A+  
Sbjct: 159 ELDILDALAEGLSSKQIALQNGLSVRTVETHRLNLKRKLGIEGQAELIKFAVEH 212


>gi|325961975|ref|YP_004239881.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468062|gb|ADX71747.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 208

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 9/151 (5%)

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                  P +              +   ++       A + F            +     
Sbjct: 43  RLVQEHGPAVVVMDLAMGPGMDGIEAIRKIRERNPRQAILVFTTYDSDADIVRAVDAGAM 102

Query: 139 L----MLANEVIIEAHGACYQ---VITD--FLELFKKRSSAARNLTERETSCLQLAGDGY 189
                  A E I  A     Q   V++      LF++  +    LT RE   L L   G 
Sbjct: 103 GYLLKDAAPEEIFAAIRGAVQGKSVMSPPVASRLFQQLRNPEEVLTPREAELLSLLTQGL 162

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           ++ E+ ++L +S  TV  +L     KL    
Sbjct: 163 SNRELGQRLFISEATVKTHLAHIYAKLGVDT 193


>gi|294665170|ref|ZP_06730471.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605083|gb|EFF48433.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 236

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156
            L+ RL         I         +   V        LA            Q       
Sbjct: 65  DLTRRLMQRSPNSRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 124

Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                ++  L    +R++ A      LT RE   +QL  +G ++ +IA +L LSV TV  
Sbjct: 125 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 184

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  +  +KL+  +  Q    AI  G 
Sbjct: 185 HRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|260770566|ref|ZP_05879499.1| nitrate/nitrite response regulator protein [Vibrio furnissii CIP
           102972]
 gi|260615904|gb|EEX41090.1| nitrate/nitrite response regulator protein [Vibrio furnissii CIP
           102972]
          Length = 67

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   L     GY +++IA++L +S  TV  ++ S   KL   +R  A    +  
Sbjct: 3   DLLTDREAQILGEVAKGYRNKQIADRLFISESTVKVHMKSLLKKLRVPSRTAATVLFLER 62


>gi|117617775|ref|YP_855754.1| positive regulator AgmR [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559182|gb|ABK36130.1| positive regulator AgmR [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 214

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S   +LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 146 ASKLASLTPQQYKVLVMLRDGSLNKQIAWELNVSEATIKAHITAIFRKLGVKNRTQAV-I 204

Query: 228 AIRF 231
           A++ 
Sbjct: 205 ALQQ 208


>gi|56413138|ref|YP_150213.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362064|ref|YP_002141701.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127395|gb|AAV76901.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093541|emb|CAR59003.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 218

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 129 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209


>gi|298251534|ref|ZP_06975337.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546126|gb|EFH79994.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 201

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 64/182 (35%), Gaps = 16/182 (8%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           DI  +     GD  +    +   P     +  E       + S  L   L     +    
Sbjct: 26  DIEVVAEVARGDTVVEAALTS-RP-DVALLDIEMPGGGGLEASHALRTALPSCRAVILTT 83

Query: 123 RLGFH---------KNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAAR 172
                           G+++  +    LA+ +    HG          L L +  +    
Sbjct: 84  FGRSGYLRRAMESGAVGFLLKDAPASELASALRRVMHGERVVDPELALLALSEGNNP--- 140

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L  A  G +  EIA +L LS  TV  +L +A  KL A NR++A   A + G
Sbjct: 141 -LTHREREVLVAALPGLSHAEIATRLALSEGTVRNHLSAAMQKLGAHNRMEAARLAEQKG 199

Query: 233 YI 234
           ++
Sbjct: 200 WL 201


>gi|291442180|ref|ZP_06581570.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291345075|gb|EFE72031.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 230

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +        L  +++                     S  A+ LT RE   ++L  +G
Sbjct: 127 QAVLAAARGDGDLPADLLGRLIRQMGT--KSPNAAVGNSSYPAQRLTPREVDVMRLVAEG 184

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + + +IA KL  S  T+   +   T +L+  NR  A+A A+R GYI
Sbjct: 185 FGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGYI 230


>gi|260201610|ref|ZP_05769101.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T46]
          Length = 293

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 205 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 264

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL   +R+Q   +A R G
Sbjct: 265 YTKLGLSSRLQLAQQAARRG 284


>gi|238062966|ref|ZP_04607675.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237884777|gb|EEP73605.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 279

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---------FHKNGYVIFTSEFLMLA 142
           +  E     +  +  ++         I   +                 Y++ T     L 
Sbjct: 112 LDVEMPGPGAAAVIRQVRRTASETRVIVLTMHDDPDMVHELLEAGAVAYLLKTILRDDLV 171

Query: 143 NEVIIEAHGACYQVI-----TDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAE 196
             V          V+          L +++       LT RE   L+L  +  ++ +IA 
Sbjct: 172 AAVRSVVRRPTQSVLLAVSRETVERLDRQKPRTNGTPLTSRELEVLRLTAEAMSNAQIAS 231

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L ++  TV  +L +   KL AV+R+ AI KA     I
Sbjct: 232 RLFITEATVKRHLTNIYAKLQAVSRVDAIRKATAARLI 269


>gi|228991572|ref|ZP_04151516.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768141|gb|EEM16760.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 201

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L++A +G T+ EI + L L+  TV  YL S+  KL+A +R QAI  A   G
Sbjct: 140 PLTAREMEILRMAKNGMTTREIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|56413638|ref|YP_150713.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179982|ref|YP_216399.1| secretion system transcriptonal activator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168233585|ref|ZP_02658643.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
 gi|168822260|ref|ZP_02834260.1| EsrB [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194469524|ref|ZP_03075508.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|197248947|ref|YP_002146649.1| EsrB [Salmonella enterica subsp. enterica serovar Agona str. SL483]
 gi|197362562|ref|YP_002142199.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|224584098|ref|YP_002637896.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|56127895|gb|AAV77401.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62127615|gb|AAX65318.1| Secretion system regulator: transcriptonal activator, homologous
           with degU/uvrY/bvgA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194455888|gb|EDX44727.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|197094039|emb|CAR59535.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197212650|gb|ACH50047.1| EsrB [Salmonella enterica subsp. enterica serovar Agona str. SL483]
 gi|205332349|gb|EDZ19113.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
 gi|205341360|gb|EDZ28124.1| EsrB [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|224468625|gb|ACN46455.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|320086128|emb|CBY95902.1| Oxygen regulatory protein nreC Nitrogen regulation protein C
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|322714449|gb|EFZ06020.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 212

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +GYT+  I+EKL +S+ TV  +  +   KL      + +  A R   
Sbjct: 150 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|308186093|ref|YP_003930224.1| Fimbriae Z protein [Pantoea vagans C9-1]
 gi|308056603|gb|ADO08775.1| Fimbriae Z protein [Pantoea vagans C9-1]
          Length = 193

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           ++ + +   A   V+       +        LT++E   L L   G ++ +IA +L +S 
Sbjct: 104 SQRMTQLLSAILAVLGGQTAFPEMDDEPELPLTQKERQILALLASGLSNLQIAAQLHISN 163

Query: 203 HTVNAYLGSATVKLDAVNRIQAI 225
            TV+ +  +   K  A + ++  
Sbjct: 164 KTVSTHKKNIMEKTGARSVVELA 186


>gi|288962862|ref|YP_003453156.1| two-component response regulator [Azospirillum sp. B510]
 gi|288915128|dbj|BAI76612.1| two-component response regulator [Azospirillum sp. B510]
          Length = 227

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT R+   L L   G +++EI E+LGL++ TV  ++      L   +R QA+      
Sbjct: 162 DGLTRRQLEVLDLLAQGLSNQEIGERLGLNLSTVKTHVTGVLKALGVGSRTQAVLLVKES 221

Query: 232 G 232
           G
Sbjct: 222 G 222


>gi|288870280|ref|ZP_06409695.1| DNA-binding response regulator VraR [Clostridium hathewayi DSM
           13479]
 gi|288867767|gb|EFD00066.1| DNA-binding response regulator VraR [Clostridium hathewayi DSM
           13479]
          Length = 183

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVI 157
             G+  ++    L     +  P          ++        +     ++EA        
Sbjct: 54  PRGEEILKEALALAEKDHLIMPFAENTGHVRLMLEALLKREESPYIREVLEACRR----Y 109

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           +  L+LF    +   +LT+RE   L+L  +GYT EEIA ++ +S+ TV  ++ +   KLD
Sbjct: 110 SSQLKLFH---ACEVSLTDRELEILKLLDEGYTHEEIAGEIYISIATVRYHVKNIYQKLD 166

Query: 218 AVNRIQAIAKAIRFGYI 234
             N+I A+ KA    +I
Sbjct: 167 VNNKILALRKAKDLNFI 183


>gi|56475502|ref|YP_157091.1| two-component response regulator [Aromatoleum aromaticum EbN1]
 gi|56311545|emb|CAI06190.1| Two-component response regulator [Aromatoleum aromaticum EbN1]
          Length = 211

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           +IE   A  Q       L  + +    +LT+RE   L L   G  +++IA+ LG+S+ TV
Sbjct: 120 LIEGCLAAEQESRGKRRLEAETTRRLGSLTQREREVLDLIIAGKLNKQIADVLGISIKTV 179

Query: 206 NAYLGSATVKLDAVNRIQAIA 226
             +      K+ A +  + + 
Sbjct: 180 EVHRARVMEKMGAHSLAKLVR 200


>gi|27380416|ref|NP_771945.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27353580|dbj|BAC50570.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 121

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAKAIR 230
           T RE   + L   G  ++ IA +L +S +TV A++G+   K    NR Q AI  A++
Sbjct: 28  TPRERELMMLIARGMQNKNIAYELKISENTVRAHIGNIMRKYRLQNRTQIAIIYALK 84


>gi|16760520|ref|NP_456137.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764741|ref|NP_460356.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141720|ref|NP_805062.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161614193|ref|YP_001588158.1| hypothetical protein SPAB_01935 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167995024|ref|ZP_02576114.1| EsrB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168239275|ref|ZP_02664333.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|168240903|ref|ZP_02665835.1| EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|168263778|ref|ZP_02685751.1| EsrB [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168463199|ref|ZP_02697130.1| EsrB [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|194448851|ref|YP_002045396.1| two-component response regulator EsrB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737568|ref|YP_002114406.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|197261742|ref|ZP_03161816.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|198243723|ref|YP_002215738.1| hypothetical protein SeD_A1950 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390296|ref|ZP_03216907.1| EsrB [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204927430|ref|ZP_03218631.1| EsrB [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205352893|ref|YP_002226694.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857103|ref|YP_002243754.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051567|ref|ZP_03344445.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428553|ref|ZP_03361303.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213610045|ref|ZP_03369871.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647230|ref|ZP_03377283.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213854965|ref|ZP_03383205.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238913204|ref|ZP_04657041.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289804327|ref|ZP_06534956.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289826048|ref|ZP_06545196.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25298758|pir||AE0700 probable two-component response regulator ssrB [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16419912|gb|AAL20315.1| secretion system regulator: transcriptonal activator [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16502816|emb|CAD01974.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137348|gb|AAO68911.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|161363557|gb|ABX67325.1| hypothetical protein SPAB_01935 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407155|gb|ACF67374.1| EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|194713070|gb|ACF92291.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|195634250|gb|EDX52602.1| EsrB [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|197239997|gb|EDY22617.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|197287974|gb|EDY27361.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|197938239|gb|ACH75572.1| EsrB [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602741|gb|EDZ01287.1| EsrB [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204322772|gb|EDZ07968.1| EsrB [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205272674|emb|CAR37584.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205327217|gb|EDZ13981.1| EsrB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205339126|gb|EDZ25890.1| EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|205347546|gb|EDZ34177.1| EsrB [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206708906|emb|CAR33236.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261246597|emb|CBG24407.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993279|gb|ACY88164.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157926|emb|CBW17421.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|309243421|gb|ADO51997.1| SsrB [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|312912376|dbj|BAJ36350.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224017|gb|EFX49080.1| Secretion system regulator of DegU/UvrY/BvgA type [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322615123|gb|EFY12046.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619966|gb|EFY16839.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622277|gb|EFY19122.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627800|gb|EFY24590.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632856|gb|EFY29600.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636653|gb|EFY33356.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641154|gb|EFY37796.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644910|gb|EFY41443.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650252|gb|EFY46666.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655826|gb|EFY52128.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660152|gb|EFY56391.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665282|gb|EFY61470.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669539|gb|EFY65687.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673465|gb|EFY69567.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677393|gb|EFY73457.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679944|gb|EFY75983.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687416|gb|EFY83388.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323129663|gb|ADX17093.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192369|gb|EFZ77600.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198612|gb|EFZ83713.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202301|gb|EFZ87347.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208658|gb|EFZ93596.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213827|gb|EFZ98605.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217635|gb|EGA02350.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323218983|gb|EGA03493.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323223662|gb|EGA07972.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229437|gb|EGA13560.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232660|gb|EGA16756.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240302|gb|EGA24346.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242710|gb|EGA26731.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323245921|gb|EGA29909.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252485|gb|EGA36332.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255186|gb|EGA38965.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260067|gb|EGA43692.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267169|gb|EGA50654.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271508|gb|EGA54929.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623486|gb|EGE29831.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326627965|gb|EGE34308.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332988278|gb|AEF07261.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 212

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +GYT+  I+EKL +S+ TV  +  +   KL      + +  A R   
Sbjct: 150 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|312884543|ref|ZP_07744247.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367855|gb|EFP95403.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 214

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +    L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSSASENPFAELSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G I
Sbjct: 193 ISGDVELTHLAIRHGMI 209


>gi|300789062|ref|YP_003769353.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798576|gb|ADJ48951.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +           + +     LT RE   ++    G  + EIA  + +S  TV  +   A 
Sbjct: 138 HVARDAGSRPEPEIARLFETLTPRELEIVEAVVSGLDNAEIAALMSVSPFTVKTHANRAM 197

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            K+ A +R Q +  A R G 
Sbjct: 198 TKVGARDRAQLVTLAFRAGI 217


>gi|213024965|ref|ZP_03339412.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 105

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 16  IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 74

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 75  MFSKLNIHGDVELTHLAIRHGL 96


>gi|223940662|ref|ZP_03632503.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890674|gb|EEF57194.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 241

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    L++RE   ++L   G + +EIA  L LSV T++ Y      K+        I  A
Sbjct: 175 APHEILSDREYQVMRLIALGKSVKEIAFDLSLSVKTISTYRTRIMEKMKFKTNADIIRYA 234

Query: 229 IRFGYI 234
           +    +
Sbjct: 235 VHERLV 240


>gi|171320406|ref|ZP_02909442.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171094356|gb|EDT39427.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 214

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASATASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 158 ERDILGALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|115525513|ref|YP_782424.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115519460|gb|ABJ07444.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 268

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS     L+ RE + L     G ++++IA +  ++  TV  ++ S   K+   NR QA  
Sbjct: 192 RSPEFPLLSGREEAILDGLVRGLSNKQIARECSITEATVKVHMKSILRKIRVSNRTQAAI 251

Query: 227 KAIRF 231
            A+  
Sbjct: 252 WALDR 256


>gi|289762657|ref|ZP_06522035.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|289710163|gb|EFD74179.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
          Length = 885

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 797 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 856

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL   +R+Q   +A R G
Sbjct: 857 YTKLGLSSRLQLAQQAARRG 876


>gi|156933491|ref|YP_001437407.1| response regulator [Cronobacter sakazakii ATCC BAA-894]
 gi|260598408|ref|YP_003210979.1| response regulator [Cronobacter turicensis z3032]
 gi|156531745|gb|ABU76571.1| hypothetical protein ESA_01309 [Cronobacter sakazakii ATCC BAA-894]
 gi|260217585|emb|CBA31835.1| Response regulator uvrY [Cronobacter turicensis z3032]
          Length = 218

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +       A     Q+    +E  +  S  A +L+ERE   + +   G    EI+E+L
Sbjct: 116 RSVHAGRRYIASDIAQQMALSQIEPDRSESPFA-SLSERELQIMLMITKGQKVNEISEQL 174

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 175 NLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|326330414|ref|ZP_08196722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951689|gb|EGD43721.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 382

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            LT RE+  LQL   G  +  IAE+L ++  TV +++     KL   NR QAIA+A
Sbjct: 321 ELTARESEVLQLMVAGAPNRVIAERLVIAEDTVKSHVKQILRKLGVANRAQAIARA 376


>gi|296160728|ref|ZP_06843542.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295889031|gb|EFG68835.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 251

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A  A  + I     L   +     NL+ R+   ++L   G+T++ IA +LG++  TV  +
Sbjct: 162 AGAALTEPIAQIQALQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARELGVAEGTVKVH 221

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L      L   NR  AI  A+  G++
Sbjct: 222 LSVIFRALGVHNRSTAI--AVINGWL 245


>gi|317129068|ref|YP_004095350.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474016|gb|ADU30619.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 231

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 38/60 (63%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T++E   LQL  DG  + EIA+KL  +  TV+  + S   K++A +R +A+ KAIR G++
Sbjct: 168 TKKEQEILQLILDGCNNGEIADKLFYANSTVSTNISSILKKMEANDRTEAMVKAIRNGWV 227


>gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family
           [Halothiobacillus neapolitanus c2]
          Length = 292

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +     +   +  +    LT RE   L     G T++EI E L +S  TVN +L     K
Sbjct: 214 IQRHAAQAEPEALARIFQLTAREAESLYWVALGKTNKEIGEILQISPRTVNKHLEHVFEK 273

Query: 216 LDAVNRIQAIAK 227
           L    R  A A 
Sbjct: 274 LGVETRTAAAAL 285


>gi|220912826|ref|YP_002488135.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219859704|gb|ACL40046.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 226

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 62/223 (27%), Gaps = 29/223 (13%)

Query: 14  LQELSPRLHLIQNRIKARNFALY-----TINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           L +       +++ ++   F +         +    P  +  I  L     D   I    
Sbjct: 23  LDDHELVRQGLKDLLEGEGFVVVGESGSAAEATRRIPALRPDISILDGRLPDGTGIEVCR 82

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
                D                 +    +     + ++R          I   ++     
Sbjct: 83  DVRSLDP---------------RLNCLILTSYDDEQAIRGAVLAGAAGYILKQIKSDD-- 125

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               +            + E  G   ++++               L+ +E   L L G G
Sbjct: 126 ----LLAGIRKAATGASLFEP-GVRERIVSGLTRTPTD--PRMEGLSAQEKKVLALVGQG 178

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            T+ +I ++L L+  TV  Y+ S   KL    R QA     R 
Sbjct: 179 LTNRQIGDELFLAEKTVKNYVSSILAKLGFERRTQAAVFVTRN 221


>gi|107100830|ref|ZP_01364748.1| hypothetical protein PaerPA_01001859 [Pseudomonas aeruginosa PACS2]
          Length = 210

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146
           +       +  ++   L         I   +       G V+           +A E + 
Sbjct: 55  LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114

Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                    +V+  +     L  + S     LTER+   L+L   G +++EI   L +S 
Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227
           +TV  ++ S    LD  +R  A  K
Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|66044632|ref|YP_234473.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|302187186|ref|ZP_07263859.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|63255339|gb|AAY36435.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
 gi|330945540|gb|EGH47068.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330968918|gb|EGH68984.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 215

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 202 AALLLQQL 209


>gi|330830693|ref|YP_004393645.1| two-component system response regulator, LuxR family [Aeromonas
           veronii B565]
 gi|328805829|gb|AEB51028.1| Two-component system response regulator, LuxR family [Aeromonas
           veronii B565]
          Length = 214

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S   +LT ++   L +  DG  +++IA +L +S  T+ A++ +   KL   NR QA+  
Sbjct: 146 ASKLASLTPQQYKVLIMLRDGSLNKQIAWELNVSEATIKAHITAIFRKLGVKNRTQAV-I 204

Query: 228 AIRF 231
           A++ 
Sbjct: 205 ALQQ 208


>gi|326774956|ref|ZP_08234221.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
 gi|326655289|gb|EGE40135.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
          Length = 1012

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 2/133 (1%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGAC 153
              +  +  L+VRL        G A  V   G                +           
Sbjct: 863 RADLREAHALAVRLLVPGGRTEGHARQVHGAGAQHRQASADQGGGGHESRAGAGRLVRLT 922

Query: 154 YQVITD-FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            + +      + +  +SA   L+  E   ++LA  G T+ +I + L L+  TV  +L  A
Sbjct: 923 EKALRAGAARVTRPAASAGEALSPAERRIVRLAAQGQTNAQIGDALHLARRTVETHLTHA 982

Query: 213 TVKLDAVNRIQAI 225
             KL    R Q +
Sbjct: 983 YRKLGVSRRTQLV 995


>gi|162452375|ref|YP_001614742.1| LuxR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161162957|emb|CAN94262.1| transcriptional regulator, LuxR family [Sorangium cellulosum 'So ce
           56']
          Length = 270

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 68/223 (30%), Gaps = 24/223 (10%)

Query: 31  RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90
                +       +P R+  + EL         +   L     D  +    + + P +W 
Sbjct: 52  EFLTFHDELVRRFYPDRKDALFELGAESARWALVDGPLKRFVRDPGISSLVTAI-PTLWH 110

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
               ET   S       L    + F     P    + ++  + +T E L L     I  H
Sbjct: 111 RYFSETDSRSEAA----LRDAGVEFRVHDLPAWHPYFEHFVIGYTKEMLELYCANPIWTH 166

Query: 151 GACY---QVITDFLELFKKRSSAA----------------RNLTERETSCLQLAGDGYTS 191
                        L      S+                  R LT RE   L+L G G T+
Sbjct: 167 RLAGGRGTTYNYLLATDPVPSAPPSGERGSGGCAGPVRSRRALTARELEVLRLVGVGKTN 226

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA  L +S  TV  ++  A  KL   +R  A       G +
Sbjct: 227 REIAVVLHISQKTVQHHIAHAYDKLGIYSRAGATLWLGERGLL 269


>gi|71908813|ref|YP_286400.1| LuxR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71848434|gb|AAZ47930.1| transcriptional regulator, LuxR family [Dechloromonas aromatica
           RCB]
          Length = 205

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
             +++   G   + +    E    R   A  L+ERE    +L   G ++ E+AE+L ++ 
Sbjct: 116 QSLLLRLVGGASRALATKSE-RPPRVDWAMLLSEREVQVARLVAGGASNREVAEQLSITE 174

Query: 203 HTVNAYLGSATVKLDAVNRIQA 224
            TV A++ +   KL   +R+Q 
Sbjct: 175 RTVKAHMSAIFEKLGLRDRLQL 196


>gi|70730577|ref|YP_260318.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344876|gb|AAY92482.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 260

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 24/226 (10%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79
            + L+       N               ++   E  +          +      D F   
Sbjct: 23  LILLLHQATPFDNALAIFYPLDGPPRALEEYDAEPSSKPASMLTY--LNGLYLLDPFFQA 80

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
              G    +++  +         +  +      +    +   ++L       +       
Sbjct: 81  CREGYPSGLYRLEEVAPDHFRQSEYFLSYFHDNVLEDEVQLILQLPEAGTLSLSL-GSQC 139

Query: 140 MLANEV-------------IIEAHGACYQVITDFLELFKKRSSAARNLT--------ERE 178
           + +++              ++E H    Q         +  S     L+        ERE
Sbjct: 140 VFSHDEIGLLTTFSAWVLPLMEQHWQHSQARPQSPAPQEMASQIRDALSHFGSAVLSERE 199

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +L   G++S+ +AE+L +S  T+  +      KLD  ++ + 
Sbjct: 200 LEIARLILRGFSSKAMAERLKISPDTIKVHRRHLYAKLDISSQPEL 245


>gi|333027004|ref|ZP_08455068.1| putative LuxR family two-component response regulator [Streptomyces
           sp. Tu6071]
 gi|332746856|gb|EGJ77297.1| putative LuxR family two-component response regulator [Streptomyces
           sp. Tu6071]
          Length = 264

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
               +V+    E   ++ + +         L+ RE   L L G G T+ +IAE+L L+  
Sbjct: 167 RMTSRVMARIREPEPEKPAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEK 226

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           TV   + S   KL    RIQA   A R 
Sbjct: 227 TVKNRVSSILGKLGVGRRIQAAMIAERL 254


>gi|299140030|ref|ZP_07033200.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598030|gb|EFI54198.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 209

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 38/64 (59%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ RET  L++   G +++ +A++L +S  TV  ++ S   KL A +R  A+  A++
Sbjct: 144 ADALSARETEVLRVVASGCSNKIVADRLAISEETVKGHIKSVLAKLCANDRTHAVMIAMK 203

Query: 231 FGYI 234
            G++
Sbjct: 204 RGFL 207


>gi|295697043|ref|YP_003590281.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
 gi|295412645|gb|ADG07137.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
          Length = 320

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +    F ++  +R  A    T RE   L L  +  +  +IA+ L +S  TV A++     
Sbjct: 219 EAGRIFAQIIARRQEALELFTPREFEVLCLLSENKSYRQIAQHLQISEGTVRAHVAGMMR 278

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           K    +R +    A +   I
Sbjct: 279 KTQVHSREELTVWARKHCLI 298


>gi|291614955|ref|YP_003525112.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291585067|gb|ADE12725.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 216

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 3/110 (2%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181
           G H       ++  L      +          +   +           +   LT RET+ 
Sbjct: 100 GAHGYVLKGVSASELRSITRRVAGGEAYVTPALAADMLTEFSNPHPIDSFSELTARETTI 159

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L+L   G T+ EI E+  L+  TV  Y+ S   KL   +R +A   A++ 
Sbjct: 160 LELLSQGLTNREIGERTYLAEKTVKHYMTSILQKLHVRSRTEAALIAMQR 209


>gi|229168156|ref|ZP_04295884.1| Response regulator receiver [Bacillus cereus AH621]
 gi|228615400|gb|EEK72497.1| Response regulator receiver [Bacillus cereus AH621]
          Length = 596

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G   + IA KL LS  TV  Y  +   KL+  NR +A+ KA   G
Sbjct: 534 GLTKRELEVLNLLSQGIRYKTIASKLYLSNGTVRNYASTLYDKLEVKNREEAVKKARDTG 593

Query: 233 YI 234
            +
Sbjct: 594 LL 595


>gi|254424904|ref|ZP_05038622.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196192393|gb|EDX87357.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 216

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L L   G  +  +A+ L +S  TV  ++     KL   +R QA+  A++ G I
Sbjct: 159 VLNLLAFGSGNASLAKALHISEGTVKFHVNHIFQKLGVHDRTQAVIVALKRGLI 212


>gi|194446212|ref|YP_002041213.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404875|gb|ACF65097.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 218

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+    +E  K  +  A +L+ERE   + +   G    EI+E+L LS  TVN+Y   
Sbjct: 129 IAQQMALSQIEPAKTETPFA-SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL+    ++    AIR G 
Sbjct: 188 MFSKLNIHGDVELTHLAIRHGL 209


>gi|319795753|ref|YP_004157393.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315598216|gb|ADU39282.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 202

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  +    A  LT R+   L L   G  +++IA +L ++  TV  ++ +    +DA NR 
Sbjct: 127 LQPRAGLVASGLTPRQLEVLLLVAQGRQNKQIAAELQIAERTVKLHITALLDAMDARNRT 186

Query: 223 QAIAKAIRFGY 233
             + +A R G 
Sbjct: 187 HLLVQARRAGL 197


>gi|282863904|ref|ZP_06272961.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560982|gb|EFB66527.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 231

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               +  +  R+LTERE   L+L  DG ++ EIA +L +S+HTV  ++    +K    +R
Sbjct: 160 RPSDQELARLRDLTEREVDVLRLIRDGLSNAEIAGELVVSLHTVKTHVSRVLMKTGCQSR 219

Query: 222 IQAIAKAI 229
            QA   A 
Sbjct: 220 AQAAVLAR 227


>gi|262200127|ref|YP_003271335.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083474|gb|ACY19442.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 410

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 164 FKKRSSAARNLT---ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
             +R      L+    RE   L     G  ++ IA +LG+S +T+  ++ S   KL   N
Sbjct: 335 EAQRRPDEERLSALNPREREVLGHLALGRRNKSIAAELGVSENTIKFHVTSILQKLHVSN 394

Query: 221 RIQAIAKAIRFGY 233
           R +A   A R G 
Sbjct: 395 RGEAGLLAARAGI 407


>gi|89092858|ref|ZP_01165810.1| DNA-binding response regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
 gi|89082883|gb|EAR62103.1| DNA-binding response regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
          Length = 214

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 36/82 (43%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
               +   +   +++    + +T+RE     +   G   +EI+E+L +S  TV+ Y    
Sbjct: 126 HELAMRLAVSRPEQKDKRLKEMTQREFEIFVMLAQGSNVKEISEQLCISSKTVSNYTAIL 185

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL+  +  + +  AI  G +
Sbjct: 186 KSKLNIGSTAELVHLAIETGLV 207


>gi|115523744|ref|YP_780655.1| response regulator FixJ [Rhodopseudomonas palustris BisA53]
 gi|115517691|gb|ABJ05675.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 205

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +IE              + +  ++    L+ RE   +     G +++ IA +  +S  T
Sbjct: 114 DMIETALMQASAGVKTEAIAQDIAARIATLSPRERQVMDGLVAGLSNKVIAREFDISPRT 173

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +  Y  +   K+ A +  + +  A+R G
Sbjct: 174 IEVYRANVMTKMQAGSLSELVRLAMRGG 201


>gi|116049343|ref|YP_791854.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390239|ref|ZP_06879714.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106385|ref|ZP_07792620.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|115584564|gb|ABJ10579.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879122|gb|EFQ37716.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 210

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146
           +       +  ++   L         I   +       G V+           +A E + 
Sbjct: 55  LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114

Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                    +V+  +     L  + S     LTER+   L+L   G +++EI   L +S 
Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227
           +TV  ++ S    LD  +R  A  K
Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|325109078|ref|YP_004270146.1| LuxR family transcriptional regulator [Planctomyces brasiliensis
           DSM 5305]
 gi|324969346|gb|ADY60124.1| two component transcriptional regulator, LuxR family [Planctomyces
           brasiliensis DSM 5305]
          Length = 220

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + LT RE    +LA  G  +++IA KLG++  TV  + G    KL   +  Q +   ++ 
Sbjct: 143 QKLTPREREVFELAAKGLLNKQIAMKLGIAEKTVKIHRGRVMHKLQLSSIAQLVQFYLQL 202


>gi|304415493|ref|ZP_07396132.1| putative two-component response regulator [Candidatus Regiella
           insecticola LSR1]
 gi|304282652|gb|EFL91176.1| putative two-component response regulator [Candidatus Regiella
           insecticola LSR1]
          Length = 189

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
               L+L K   + + +LT RE   L+L  +G  +  IAEKL +S  TV  +  +   KL
Sbjct: 112 HDQVLQLMKTCHNPS-SLTPRERQVLKLITEGACNRVIAEKLTISKKTVETHRLNMMRKL 170

Query: 217 DAVNRIQAIAKAIRFGY 233
           D       I  + R G+
Sbjct: 171 DVHKVADLIDWSHRLGF 187


>gi|239996122|ref|ZP_04716646.1| two component LuxR family transcriptional regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 214

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 10/123 (8%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL--ELFKKRSSAA 171
           P+ +     G   F ++      EVI   H           +V       +L     +  
Sbjct: 88  PIPMQVMDAGAYGFLTKDAEPD-EVIRAIHKVAAGQKYVDQEVANSIAIGKLLPSSDNPF 146

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE +      +G+   +IA +L ++  TVN Y      KL   + ++    A R 
Sbjct: 147 DELSSRELTIAMRLTEGHKVPDIARELSINSKTVNTYRYRMFQKLGVNSDVELTHLAYRH 206

Query: 232 GYI 234
             I
Sbjct: 207 KLI 209


>gi|223934648|ref|ZP_03626568.1| transcriptional regulator, LuxR family [bacterium Ellin514]
 gi|223896603|gb|EEF63044.1| transcriptional regulator, LuxR family [bacterium Ellin514]
          Length = 88

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               K +    +LT+RE   L+L   G  ++ IAE+LG++V  V  +L     KL   +R
Sbjct: 14  RGQAKAAQQVDDLTDREREVLELVMHGDGNKAIAERLGVTVAAVKWHLQHIYEKLHVHSR 73

Query: 222 IQAIAK 227
            +A  K
Sbjct: 74  TEAALK 79


>gi|212636250|ref|YP_002312775.1| LuxR family DNA-binding response regulator [Shewanella
           piezotolerans WP3]
 gi|212557734|gb|ACJ30188.1| DNA-binding response regulator, LuxR family [Shewanella
           piezotolerans WP3]
          Length = 216

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +L+ R+ S L +  DG  +++IA +LGLS  T+ A+  +  +KL    R QA+ 
Sbjct: 149 SLSPRQHSILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRTQAVI 202


>gi|261408228|ref|YP_003244469.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261284691|gb|ACX66662.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 202

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 47/115 (40%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
           +  + L     GY++ +++   +A ++   A G+          L         +LT RE
Sbjct: 88  SIRLALLAGAEGYMLKSTQVSSMAQQLRALASGSSVVDANVLKTLMLPEKENRSDLTPRE 147

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L+L   G ++ EIAE+L +S  TV   L     KL+  +R Q      R   
Sbjct: 148 NDILELVALGCSNREIAEQLFISEGTVRNTLSIILDKLELRDRTQLAIYYWRQSL 202


>gi|110834165|ref|YP_693024.1| DNA-binding response regulator GacA [Alcanivorax borkumensis SK2]
 gi|110647276|emb|CAL16752.1| DNA-binding response regulator GacA [Alcanivorax borkumensis SK2]
          Length = 217

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              S    L+ERE   + +    +  +++A+KL LS  TVN Y      KL   + ++  
Sbjct: 141 DEGSQLDMLSERELQIMMMIVSCHKVQDVADKLCLSPKTVNTYRYRIFDKLGVTSDVEMA 200

Query: 226 AKAIRFGYI 234
             A+R G +
Sbjct: 201 LLAVRHGML 209


>gi|90023460|ref|YP_529287.1| two component LuxR family transcriptional regulator [Saccharophagus
           degradans 2-40]
 gi|89953060|gb|ABD83075.1| two component transcriptional regulator, LuxR family
           [Saccharophagus degradans 2-40]
          Length = 205

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L+++E   L+LAG G  + EIA  L LS  TV  YL  A  KL+A NR
Sbjct: 133 ELAIAALDDKDPLSDKERKALRLAGSGKKTAEIANDLCLSEGTVRNYLSEAISKLNATNR 192

Query: 222 IQAIAKAIRFGYI 234
           I A   A + G++
Sbjct: 193 IDAARIARQKGWL 205


>gi|242312015|ref|ZP_04811032.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|242135254|gb|EES21657.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
          Length = 202

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 86  VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 145

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 146 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 199


>gi|28871170|ref|NP_793789.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213969159|ref|ZP_03397298.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301383947|ref|ZP_07232365.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302064168|ref|ZP_07255709.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134747|ref|ZP_07260737.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28854420|gb|AAO57484.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926157|gb|EEB59713.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331016409|gb|EGH96465.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 215

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 202 AALLLQQL 209


>gi|315642413|ref|ZP_07896990.1| LuxR family DNA-binding response regulator [Enterococcus italicus
           DSM 15952]
 gi|315482290|gb|EFU72845.1| LuxR family DNA-binding response regulator [Enterococcus italicus
           DSM 15952]
          Length = 202

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE S L     G ++ ++AE+L LS  T+  Y+ S   K    +RI+AI  A + G
Sbjct: 140 PLTKREMSVLAGLQTGASTAKMAEELFLSEGTLRNYISSILSKTGTHSRIEAINIAKKNG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|239945114|ref|ZP_04697051.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991577|ref|ZP_04712241.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448577|ref|ZP_06587967.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351524|gb|EFE78428.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 220

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183
                  + T     + +                        S     R L+ RE   L+
Sbjct: 109 AGGVKGYVVTGTRTNIGHPARPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLR 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G +++ I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|182435268|ref|YP_001822987.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326775907|ref|ZP_08235172.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178463784|dbj|BAG18304.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656240|gb|EGE41086.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 220

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183
                  + T     + +                        S     R L+ RE   L+
Sbjct: 109 AGGVKGYVVTGTRTNIGHPTRPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLR 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G +++ I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|157370090|ref|YP_001478079.1| response regulator [Serratia proteamaculans 568]
 gi|157321854|gb|ABV40951.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 218

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +       A     Q+     +L  +  +    L+ERE   + +   G    EI+E+L
Sbjct: 116 RAVQAGQRYIASDIAQQM--ALSQLEPQTETPFSCLSERELQIMLMITKGKKVNEISEQL 173

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 174 SLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|158316791|ref|YP_001509299.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112196|gb|ABW14393.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec]
          Length = 81

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ERE   L L G G ++ EI+ +L +   T   ++     KL   +R+QA+  A   G +
Sbjct: 13  EREHEVLLLLGRGLSNAEISARLHVGEATAKTHVKRILDKLGLRDRMQAVVFAFDHGLV 71


>gi|332669983|ref|YP_004452991.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339021|gb|AEE45604.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 215

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 16/157 (10%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF-------------- 138
             +    S   L+  L       A +   +          +                   
Sbjct: 56  DLDLGDGSGVDLTRELLAARPGLAVLVVTMHEDDDAVVASVRAGARGYLVKSAPPDAVER 115

Query: 139 --LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
               +A   +I +     + +   L            LT+RE   L L   G  +  I+ 
Sbjct: 116 AVRAVAAGEMILSPAVAQRAMAYVLGGRTATRVPFPQLTDREREVLDLVAAGRDNAVISR 175

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +L LS  TV  ++ +   KL   +R  AI +A   G 
Sbjct: 176 RLSLSPKTVRNHVANVLTKLSLPDRSAAILRAREEGL 212


>gi|325279884|ref|YP_004252426.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus
           DSM 20712]
 gi|324311693|gb|ADY32246.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus
           DSM 20712]
          Length = 206

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++  +    L+ RE   +     G T++EIA+ L LS HTV  +  +   KL   +    
Sbjct: 128 EEELAGQEVLSSREKEIITCVVKGMTNKEIADALYLSAHTVITHRRNIARKLQIHSPAGL 187

Query: 225 IAKAIRFGYI 234
              AI    +
Sbjct: 188 TIYAIVNKLV 197


>gi|294631223|ref|ZP_06709783.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834556|gb|EFF92905.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 204

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           DI  +     GD+ +         +    +  E    +  + + RL   L     +    
Sbjct: 29  DIEVVAQVARGDEVVAAAR--AHGVDVALLDIEMPGCTGIEAAARLHRELPAVKLVVLTT 86

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTE 176
                     +       L  +       A  + +     +     +A      A  LT+
Sbjct: 87  FGRPGYLRSAMEAGADAFLVKDAPAAQLAAAVRKVLAGERVIDPTLAAAALAEGANPLTD 146

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+ A DG T+ E+A  L LS  TV  YL +A  KL   NR +A+  A   G++
Sbjct: 147 REREVLRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRTAREKGWL 204


>gi|226359606|ref|YP_002777384.1| two-component response regulator DevR [Rhodococcus opacus B4]
 gi|226238091|dbj|BAH48439.1| two-component response regulator DevR [Rhodococcus opacus B4]
          Length = 215

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            A   ++         +     +LT +E + L L G+G T+ +IA ++ L+  TV  Y+ 
Sbjct: 128 RAAGVLMDKVRADADGKDGIFAHLTNQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVS 187

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
               KL    R QA   A + 
Sbjct: 188 RLLTKLGVERRTQAAVLATKM 208


>gi|194445553|ref|YP_002040645.1| hypothetical protein SNSL254_A1504 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404216|gb|ACF64438.1| EsrB [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
          Length = 212

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +GYT+  I+EKL +S+ TV  +  +   KL      + +  A R   
Sbjct: 150 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|149186155|ref|ZP_01864469.1| probable transcriptional regulatory protein, LuxR family protein
           [Erythrobacter sp. SD-21]
 gi|148830186|gb|EDL48623.1| probable transcriptional regulatory protein, LuxR family protein
           [Erythrobacter sp. SD-21]
          Length = 209

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 34/80 (42%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +   +      +  +   +L+ RE   L+   +G +++ IA +L +S  TV  +  +  
Sbjct: 121 AKAYGEARRKMIEARNRIASLSPREREVLEWLSEGRSNKMIARELHISPRTVEIHRANMM 180

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KL A +  +A+   +    
Sbjct: 181 SKLGAHHAAEAVRLRLEAHL 200


>gi|170727066|ref|YP_001761092.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169812413|gb|ACA86997.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 219

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA+ 
Sbjct: 155 LTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|111022297|ref|YP_705269.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110821827|gb|ABG97111.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1084

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 51/178 (28%), Gaps = 12/178 (6%)

Query: 60   DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG-- 117
            D       L     D       + +  + W      T         +     L   AG  
Sbjct: 907  DLLQEGVRLARLVDDPV--SCANCVEVLAW---IAGTSDPERASTLMGAADALGRAAGSP 961

Query: 118  -IAFP---VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             +  P   V     +       +E           A            E  +K +     
Sbjct: 962  SVFVPDLLVHHEECERSARRMLTEHAFEEARQRGRAMDLGSAASYALEEDPRKPTPPGPA 1021

Query: 174  -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             LT+RE    +L  +G T++ IA +L +S  T   ++     KL   +R Q  A  + 
Sbjct: 1022 TLTKREQQVAELIAEGLTNKAIAARLVISHRTAQGHVEHILTKLGFTSRAQVAAWVVE 1079


>gi|110642151|ref|YP_669881.1| putative transcriptional regulator [Escherichia coli 536]
 gi|306814902|ref|ZP_07449064.1| hypothetical protein ECNC101_22712 [Escherichia coli NC101]
 gi|110343743|gb|ABG69980.1| putative transcriptional regulator [Escherichia coli 536]
 gi|112292719|emb|CAJ76299.1| putative regulatory protein [Escherichia coli]
 gi|305852296|gb|EFM52748.1| hypothetical protein ECNC101_22712 [Escherichia coli NC101]
 gi|307626511|gb|ADN70815.1| hypothetical protein UM146_07090 [Escherichia coli UM146]
          Length = 70

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L++   G    +I+  L +S++TV  ++ +   K+ A N   AI  A R  
Sbjct: 9   PLSLRERQVLRMLAQGDEYSQISHNLNISINTVKFHVKNIKHKIQARNTNHAIHIANRNE 68

Query: 233 YI 234
            I
Sbjct: 69  II 70


>gi|119946176|ref|YP_943856.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
 gi|119864780|gb|ABM04257.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
          Length = 216

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +LT RE   L+    G  +++IA  L +S  TV +++ S   KL A NR++ +
Sbjct: 152 SLTRRELMVLKNLSQGEANKQIAVNLFISEATVKSHVSSILKKLGASNRVKVV 204


>gi|78060879|ref|YP_370787.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77968764|gb|ABB10143.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 214

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + +   +      +S    LT R
Sbjct: 98  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIHASATASPLDRLTPR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 158 ERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|148253086|ref|YP_001237671.1| LuxR transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405259|gb|ABQ33765.1| Regulatory protein, LuxR [Bradyrhizobium sp. BTAi1]
          Length = 201

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NL  RE   L     G TS EIA+ LGLS  TV+ ++ +A +KL    R QA  KA+   
Sbjct: 138 NLNHREIETLTWVARGKTSAEIAKILGLSKRTVDFHIDNARIKLGVATRTQAAIKAVTGK 197

Query: 233 YI 234
            I
Sbjct: 198 LI 199


>gi|330719950|gb|EGG98410.1| hypothetical protein imdm_44 [gamma proteobacterium IMCC2047]
          Length = 224

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            LE+      A   LTER+   L L G+G ++++IA +L LS +T+  ++      L+  
Sbjct: 142 ALEIPVDLKRAYDVLTERQKEILLLLGEGRSNKDIARRLDLSENTIKVHVSGVLRALNLN 201

Query: 220 NRIQAIAK 227
           NR QA   
Sbjct: 202 NRTQAGVI 209


>gi|317481525|ref|ZP_07940584.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|316902311|gb|EFV24206.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 99

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S  + L+ RE   L+L   G+ S+EIA +LG+S++TVN +  +   KL+A N ++AI  
Sbjct: 35  SPDKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSKLNANNIMEAIHI 93


>gi|239994527|ref|ZP_04715051.1| DNA-binding response regulator, LuxR family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 206

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+++E S L+LA +G  ++ IA+ L LS  TV  YL  A  KLDA NR+ A   A + G
Sbjct: 145 PLSQKEMSALKLASEGLKTQGIAQSLFLSEGTVRNYLSEAISKLDATNRVDAARIAKQKG 204

Query: 233 YI 234
           ++
Sbjct: 205 WL 206


>gi|284032204|ref|YP_003382135.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811497|gb|ADB33336.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 14/111 (12%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
           R+           +  LM       +AH    + ++               L+ RE   +
Sbjct: 122 RVAAGDPILSPAITRRLMERAATQADAHTQAQEALSR--------------LSPREYDVM 167

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
                G  + EIA +L +SV TV A++     KL+  NR Q    A   G 
Sbjct: 168 LAVARGKANAEIAAELFMSVATVKAHISHILTKLEVSNRTQIALLAHDAGL 218


>gi|222778561|gb|ACM67367.1| OtcG [Streptomyces rimosus]
          Length = 237

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            L+ RE   ++    G ++ +IA +L ++  TV  +L +   KL AV+RI A+ KA
Sbjct: 147 RLSARELQIMENVARGLSNSQIAARLTITEATVKRHLSNVFEKLGAVSRIDAVNKA 202


>gi|212709567|ref|ZP_03317695.1| hypothetical protein PROVALCAL_00609 [Providencia alcalifaciens DSM
           30120]
 gi|212687905|gb|EEB47433.1| hypothetical protein PROVALCAL_00609 [Providencia alcalifaciens DSM
           30120]
          Length = 228

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
               +    L   ++       L+ RE   + +   G   ++IA+ L LS  TVN Y   
Sbjct: 129 IAQHLALQRLNQREQ-LDIYELLSARELEIMLMITRGTPVKQIADTLSLSPKTVNTYRYR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL+  + ++    AI +G I
Sbjct: 188 MFGKLNISSDVELTHIAISYGLI 210


>gi|158336172|ref|YP_001517346.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306413|gb|ABW28030.1| transcriptional regulator, LuxR family [Acaryochloris marina
           MBIC11017]
          Length = 237

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 17/167 (10%)

Query: 70  ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
               +    +      P+     +       +  L           AG   P+       
Sbjct: 57  SLEHNPLARYLAECHTPVH----EGLVTTPKAWTLICPRPDHWHVMAG---PIVNCGQLV 109

Query: 130 GYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSS--------AARNLTERET 179
           G V  T         ++ + +    C  + T    +  ++S+        + + LT RE 
Sbjct: 110 GAVGCTREKSMPAFDHQDLADLSAVCLHLSTWTTTVRSQQSTMNSQNPLLSTKRLTPREL 169

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               L   G T+ EI ++L ++ ++V   L     KL   +R + +A
Sbjct: 170 EIANLVALGRTNAEIGKELWITENSVKQALKRMFRKLKVSSRTKMVA 216


>gi|152999001|ref|YP_001364682.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|151363619|gb|ABS06619.1| response regulator receiver protein [Shewanella baltica OS185]
          Length = 200

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               A  +   +    F+++S       LTERE   L     G T+++I+E + LS+ T+
Sbjct: 111 ALVQAIEKAQRESQAAFEQQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170

Query: 206 NAYLGSATVKLDAVNRIQAI 225
             +      KL+  N  + +
Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190


>gi|323493301|ref|ZP_08098425.1| response regulator [Vibrio brasiliensis LMG 20546]
 gi|323312464|gb|EGA65604.1| response regulator [Vibrio brasiliensis LMG 20546]
          Length = 214

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G I
Sbjct: 193 ISGDVELTHLAIRHGMI 209


>gi|296394763|ref|YP_003659647.1| LuxR family two component transcriptional regulator [Segniliparus
           rotundus DSM 44985]
 gi|296181910|gb|ADG98816.1| two component transcriptional regulator, LuxR family [Segniliparus
           rotundus DSM 44985]
          Length = 217

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  + ++   + A   +++        + + L     + S    LTE+E   L L G+G 
Sbjct: 108 GMELVSAVRSVGAGRSLLD--SRVTTALVNRLRAAADKHSPLVRLTEQERVLLDLIGEGL 165

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T+ +IA+++ L+  T+  Y+     KL    R QA   
Sbjct: 166 TNRQIAQRMFLAEKTIKNYVSRLLTKLGLDRRTQAAVL 203


>gi|269139390|ref|YP_003296091.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|267985051|gb|ACY84880.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|304559286|gb|ADM41950.1| BarA-associated response regulator UvrY [Edwardsiella tarda FL6-60]
          Length = 218

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLTPQSESPFGSLSERELQIMLMITKGSKVTEISEQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|262202633|ref|YP_003273841.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085980|gb|ACY21948.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 216

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + +  A +LTERE         G ++ EIAE+L +S+ TV A++     KLDA NR+Q
Sbjct: 146 SAQAAQRAESLTERERDVAVELARGASNAEIAERLYMSLATVKAHISHIFTKLDATNRVQ 205

Query: 224 AIAKAIRFGY 233
                   G 
Sbjct: 206 VAICMHDAGL 215


>gi|226361722|ref|YP_002779500.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240207|dbj|BAH50555.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 411

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L  RE   L     G  ++ IA+ LG+S  TV  ++     KL   +R +A A A+  G 
Sbjct: 344 LNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVASRGEAGAIALEAGI 403


>gi|144898190|emb|CAM75054.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 213

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL----ELFKKRSS 169
               +   +RLG         +   ++ A ++++        ++ D           RS 
Sbjct: 86  DRDHVLEAMRLGADGFIPKHLSGGAMVSALQLVLSGERFIPSMLMDSANNQISGASDRSP 145

Query: 170 AAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +      LT RE   L L  +G  ++ IA +L +   TV ++LG+   KL   NR+QA+ 
Sbjct: 146 SGDLLGRLTPRERDILHLLREGLPNKVIAARLDVREVTVKSHLGNMFRKLGVQNRLQAMR 205

Query: 227 K 227
            
Sbjct: 206 M 206


>gi|187478369|ref|YP_786393.1| virulence factors transcription regulator [Bordetella avium 197N]
 gi|115422955|emb|CAJ49484.1| virulence factors transcription regulator [Bordetella avium 197N]
          Length = 207

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE + LQL   G T+++IA+ + LS  T++ Y      KL+A   ++ I  A R  
Sbjct: 146 SLSNRELAVLQLLAQGLTNKDIADSMFLSNKTISTYKTRLLQKLNATTLVELIDMAKRNN 205

Query: 233 Y 233
            
Sbjct: 206 L 206


>gi|56963890|ref|YP_175621.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56910133|dbj|BAD64660.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 204

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           +L K  + A   LT+RE+   +    G +++EIA  L LSV TV   L     KL+  +R
Sbjct: 131 QLVKPHADALAGLTKRESEIAECIAQGLSNKEIAAHLFLSVGTVRNTLSVILDKLELRDR 190

Query: 222 IQAIAK 227
            Q    
Sbjct: 191 TQLAIY 196


>gi|88811894|ref|ZP_01127147.1| DNA-binding response regulator, LuxR family protein [Nitrococcus
           mobilis Nb-231]
 gi|88790778|gb|EAR21892.1| DNA-binding response regulator, LuxR family protein [Nitrococcus
           mobilis Nb-231]
          Length = 245

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT R+   LQL  +G T+ +IA+ L LS+ TV A+      +LD  +    +  A+R 
Sbjct: 172 EVLTPRQRQILQLIVEGNTNSDIADLLHLSIKTVEAHRSELMHRLDIHDVPSLVRYAMRM 231

Query: 232 GYI 234
           G I
Sbjct: 232 GII 234


>gi|332163428|ref|YP_004300005.1| two-component system response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607927|emb|CBY29425.1| transcriptional regulatory protein UhpA [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667658|gb|ADZ44302.1| two-component system response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863674|emb|CBX73779.1| transcriptional regulatory protein uhpA [Yersinia enterocolitica
           W22703]
          Length = 196

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           A   LT RE     L   G    +IAE LGLS  TV+ +  +   KL   N ++ 
Sbjct: 135 AIDPLTRREREVAVLLAQGMEVRDIAESLGLSPKTVHVHRANLFAKLGVSNNVEL 189


>gi|167035315|ref|YP_001670546.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166861803|gb|ABZ00211.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 207

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              +           +     L+ RE + LQ    G +++EIA+ + LS  TV+ Y    
Sbjct: 126 NQALHASRGRGAASEADMVNRLSAREMTVLQQLARGRSNKEIADSMYLSNKTVSTYKSRL 185

Query: 213 TVKLDAVNRIQAIAKAIRFGY 233
            +KL+A + +  I  A R G 
Sbjct: 186 LLKLNARSLVDLIELAQRQGL 206


>gi|166710233|ref|ZP_02241440.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 222

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|111019574|ref|YP_702546.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819104|gb|ABG94388.1| transcriptional regulator, LuxR family protein [Rhodococcus jostii
           RHA1]
          Length = 412

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L  RE   L     G  ++ IA+ LG+S  TV  ++     KL   +R +A A A+  G 
Sbjct: 344 LNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVASRGEAGAIALEAGI 403


>gi|120404945|ref|YP_954774.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957763|gb|ABM14768.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
          Length = 301

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  S  A +LT RE   L+   +G T+  IA  L +S  TV  ++     KL A NR +
Sbjct: 227 ARAPSGRAHSLTRRELEVLEFVAEGATNARIARALTISEGTVKGHMKHILRKLGAANRAE 286

Query: 224 AI 225
           A+
Sbjct: 287 AV 288


>gi|332708630|ref|ZP_08428603.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352586|gb|EGJ32153.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 211

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +RE   L+L G G ++ EIA  L L+  T+  +L +   +LD  +R QA   A + 
Sbjct: 155 QRELQILKLLGQGKSNREIAAALNLTEGTIKNHLTNIFCELDVRDRTQAALWAHQH 210


>gi|229173813|ref|ZP_04301353.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228609663|gb|EEK66945.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 186

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT  E   LQL  DGY  +EIA  L  S  T++ ++     KL+  + ++A+  
Sbjct: 116 TETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTN 175

Query: 228 AIRFGYI 234
            I+ GYI
Sbjct: 176 GIKLGYI 182


>gi|116071221|ref|ZP_01468490.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116066626|gb|EAU72383.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 239

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
               +  LT RE   L+    G +++EIA++L L+V T+   + S   KL+A +R QA+ 
Sbjct: 157 APPLSDVLTLREEDVLRGLCRGLSNQEIADQLHLAVDTIKHAVTSLLRKLEARDRTQAVL 216

Query: 227 KAIRFGYI 234
            A +   +
Sbjct: 217 VAFQHNLV 224


>gi|153207364|ref|ZP_01946101.1| transcriptional regulator [Coxiella burnetii 'MSU Goat Q177']
 gi|154707552|ref|YP_001424123.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|165918493|ref|ZP_02218579.1| transcriptional regulator [Coxiella burnetii RSA 334]
 gi|212219060|ref|YP_002305847.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|120576673|gb|EAX33297.1| transcriptional regulator [Coxiella burnetii 'MSU Goat Q177']
 gi|154356838|gb|ABS78300.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|165917861|gb|EDR36465.1| transcriptional regulator [Coxiella burnetii RSA 334]
 gi|212013322|gb|ACJ20702.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 211

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S    ++++RE   L +   G  +E IA+KL LS  TV+ Y  +   KL+  N  + I  
Sbjct: 143 SGVLDSISDREMEILLMMVRGVPTETIAQKLHLSPKTVSTYRVAIFKKLNVKNDAELILL 202

Query: 228 AIRFGYI 234
            +R G +
Sbjct: 203 GMRQGLL 209


>gi|29829674|ref|NP_824308.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606783|dbj|BAC70843.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 204

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 61/178 (34%), Gaps = 8/178 (4%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
           DI  +     GD+ L         +    +  E    +  + + ++   L     +    
Sbjct: 29  DIEVVAQVARGDEVLAAAREH--AVDVALLDIEMPGATGIEAAAQVNRELPAVKLVVLTT 86

Query: 123 RLGFHKNGYVIFTSEF----LMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTE 176
                     +                + EA       + + D        +  A  LT+
Sbjct: 87  FGRPGYLRSAMEAGADAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAGGANPLTD 146

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   L+ A DG T+ E+A  L LS  TV  YL +A  KL   NR +A+  A   G++
Sbjct: 147 REREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLAVRNRTEAVRTARDKGWL 204


>gi|53715903|ref|YP_106580.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           ATCC 23344]
 gi|53723332|ref|YP_112317.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|76817735|ref|YP_336620.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1710b]
 gi|121598016|ref|YP_990699.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           SAVP1]
 gi|124383003|ref|YP_001025181.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10229]
 gi|126446602|ref|YP_001079535.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10247]
 gi|167725443|ref|ZP_02408679.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
 gi|167744363|ref|ZP_02417137.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167821567|ref|ZP_02453247.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167829907|ref|ZP_02461378.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167908316|ref|ZP_02495521.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167916665|ref|ZP_02503756.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167924513|ref|ZP_02511604.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217424235|ref|ZP_03455734.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|237507511|ref|ZP_04520226.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|254176604|ref|ZP_04883262.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|254186993|ref|ZP_04893508.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254192475|ref|ZP_04898914.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254203600|ref|ZP_04909961.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|254205467|ref|ZP_04911820.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|254264625|ref|ZP_04955490.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|52213746|emb|CAH39801.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52421873|gb|AAU45443.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 23344]
 gi|76582208|gb|ABA51682.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710b]
 gi|121225814|gb|ABM49345.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           SAVP1]
 gi|126239456|gb|ABO02568.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10247]
 gi|147745839|gb|EDK52918.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|147755053|gb|EDK62117.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|157934676|gb|EDO90346.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697646|gb|EDP87616.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|169649233|gb|EDS81926.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|217392700|gb|EEC32723.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|234999716|gb|EEP49140.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|254215627|gb|EET05012.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|261827081|gb|ABM99049.2| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10229]
          Length = 215

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|11467319|ref|NP_043176.1| putative OmpR transcriptional regulator [Cyanophora paradoxa]
 gi|1351750|sp|P48359|YCF29_CYAPA RecName: Full=Probable transcriptional regulator ycf29
 gi|1016120|gb|AAA81207.1| putative OmpR transcriptional regulator [Cyanophora paradoxa]
          Length = 210

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE S L L  +G  +++IA  L +S+  V  Y+    +K    NR + +  A+    I
Sbjct: 150 TPREQSVLNLVVEGLLNKQIAANLNISIRIVEKYVSRLFIKTKTRNRAELVKYALENNLI 209


>gi|21223737|ref|NP_629516.1| chitinase two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785170|ref|ZP_05523601.1| chitinase two-component response regulator [Streptomyces lividans
           TK24]
 gi|289769063|ref|ZP_06528441.1| response-regulator [Streptomyces lividans TK24]
 gi|4323625|gb|AAD16452.1| response-regulator [Streptomyces coelicolor A3(2)]
 gi|8568799|emb|CAB94548.1| chitinase two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289699262|gb|EFD66691.1| response-regulator [Streptomyces lividans TK24]
          Length = 213

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +     +       +  R LT RE   L   G+G ++  +AE+L ++  TV  ++ 
Sbjct: 131 RLIAEFAAKPVREPTADPAVLRELTRREREVLSCLGEGLSNAAVAERLDMAEATVKTHVS 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               KL   +R+QA   A   G 
Sbjct: 191 RLLGKLGLRSRVQAAVLAQELGI 213


>gi|325066413|ref|ZP_08125086.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 244

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G T++EI ++  LS+ TV  ++     K    +R+Q +  A+R G
Sbjct: 174 GLTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTGCRDRVQLVLLALRGG 233

Query: 233 YI 234
            I
Sbjct: 234 VI 235


>gi|242278505|ref|YP_002990634.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242121399|gb|ACS79095.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           salexigens DSM 2638]
          Length = 218

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +LTERE   L+    GY + EIA+ L +SV TV  +  +   KL   ++ + 
Sbjct: 152 ESLTEREREVLKQVLAGYKNREIADLLVISVKTVEKHRSNFMKKLGLRSKAEL 204


>gi|239944305|ref|ZP_04696242.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990759|ref|ZP_04711423.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447772|ref|ZP_06587162.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291350719|gb|EFE77623.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 216

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 151 GACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                  T  +   +         LT RE   L   G+G ++ EIA +L ++  TV  ++
Sbjct: 133 LIAEFAGTTPVRTRETADPVVLDTLTRREREVLGCLGEGLSNAEIAARLSMAEATVKTHV 192

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL+  +R+QA   A   G 
Sbjct: 193 SRLLGKLELRSRVQAAVLAQELGI 216


>gi|146297802|ref|YP_001192393.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146152220|gb|ABQ03074.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 221

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L+ RE   LQL     T+ EIAE L LS  TV  +  +  +K ++ N    +  AI+ 
Sbjct: 157 LSPREIEILQLICQQKTTSEIAEHLFLSPRTVEGHRNNLLLKTESRNIAGLVVYAIQN 214


>gi|126174706|ref|YP_001050855.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|153001005|ref|YP_001366686.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|125997911|gb|ABN61986.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
 gi|151365623|gb|ABS08623.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
          Length = 220

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K +S   +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA
Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 225 IA 226
           + 
Sbjct: 206 VI 207


>gi|319785539|ref|YP_004145015.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171427|gb|ADV14965.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 219

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + LT ++T  L +  +G  +++IA +LG+S  T+ A++ +   KL   +R QA+    
Sbjct: 149 RLQALTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVILLS 208

Query: 230 RFG 232
           + G
Sbjct: 209 KIG 211


>gi|317489390|ref|ZP_07947902.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832371|ref|ZP_08165345.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|316911497|gb|EFV33094.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486007|gb|EGC88462.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 488

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 41/90 (45%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
            + + E      +   D LE      + A  LT RE+  L   G G T+  I+EKL +S 
Sbjct: 395 FDAVAEEGAPTAEQQGDALEARCAHVAEAHGLTPRESEILVHLGQGRTARAISEKLVVSE 454

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +TV  ++ S   KLD  +R + I    R G
Sbjct: 455 NTVKYHIKSIYQKLDVHSRDEVIDLIERSG 484


>gi|295690538|ref|YP_003594231.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295432441|gb|ADG11613.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC
           21756]
          Length = 137

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +  A  LT +E   L+    G +++E+A  LGLS +TV  ++ +   KL+   R QAI
Sbjct: 68  DAALRALGLTGQEVRVLERLAAGRSNKEMARDLGLSPNTVKTHVANLYGKLEVSRRTQAI 127

Query: 226 AKAIRFGYI 234
            KA     I
Sbjct: 128 GKARDLALI 136


>gi|288941613|ref|YP_003443853.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288896985|gb|ADC62821.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 209

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 5/105 (4%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAARNLTERET 179
                       +FL                   D     +           R LT RE 
Sbjct: 89  PTTVRAIQGGAIDFLEKPASTEQLLQRIEDAFAEDRRRREEAATEYDIRERFRQLTPREH 148

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             L L   G T+++IA +LG+S  TV  +      K+ A N  + 
Sbjct: 149 EVLTLTTRGLTNKDIARQLGISPRTVENHRARMMEKMGAGNLAEL 193


>gi|239906183|ref|YP_002952922.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239796047|dbj|BAH75036.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 220

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 153 CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              ++   L    + +S      LT RE   L+L   G+T  +IA  L LSV T++ +  
Sbjct: 131 AEVLLDQLLSPTPQAASPDPYAVLTAREREVLKLLVRGHTLTQIAGLLHLSVKTIDTHKT 190

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               KL+  ++ Q +  A+R G +
Sbjct: 191 HVMEKLNLTHKSQLVDYALRHGLL 214


>gi|258655183|ref|YP_003204339.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558408|gb|ACV81350.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 217

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              +  +  + A      +                 LT RE   +++  +G++S  IA+ 
Sbjct: 119 RAAVRGDPFVCAGATSALIQDYLRRQRSGERIPDSILTAREEEVVKMIAEGHSSRAIADA 178

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +SV TV+ +  +   KL   +R+     AIR G I
Sbjct: 179 LVISVKTVDRHRANVLHKLGLHDRLALTRFAIRAGLI 215


>gi|300778489|ref|ZP_07088347.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum
           ATCC 35910]
 gi|300503999|gb|EFK35139.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum
           ATCC 35910]
          Length = 245

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           L+ RE   L+  G+GY S+EIA+ L +SV+TV+ +  +   KL   N  QA
Sbjct: 189 LSPRELEVLKFVGEGYASKEIADMLSISVNTVSRHRQNILEKLKVKNSTQA 239


>gi|284993288|ref|YP_003411843.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066534|gb|ADB77472.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 222

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
           +   +  +   +   E   ++H A   V +         ++   +LT RE   L L   G
Sbjct: 117 DAVALVAAIRAVRRGESAFDSHSATMVVRSLAAPAPSPVAATGPDLTAREREVLTLLARG 176

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++E I  +L +S  T   ++G+   K+    R +A+    + G I
Sbjct: 177 LSNEAIGRELYISATTAKFHVGNVMRKMAVSRRAEAVYAGSKLGLI 222


>gi|237808304|ref|YP_002892744.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
 gi|237500565|gb|ACQ93158.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
          Length = 215

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + L++RE     +   G   ++IAE L LS  TVN+Y      KL+    ++    AI
Sbjct: 146 PFKALSDREMQITMMITKGDKVQDIAESLNLSPKTVNSYRYRLFEKLNISGDVELTRMAI 205

Query: 230 RFGYI 234
           R+G +
Sbjct: 206 RYGIL 210


>gi|209515178|ref|ZP_03264046.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209504432|gb|EEA04420.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 208

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 140 MLANEVIIEAHGACYQ----VITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEE 193
               + + +A  +  Q           + +         +L+ RE   LQL   G +  E
Sbjct: 105 DTTPDALFDALRSAAQGRRPARAALASVEEDSESRPPHYSLSARELQILQLIVSGKSLTE 164

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           I   + +SV T + Y      KL+  +  Q I  AIR G
Sbjct: 165 IGRLIFISVKTASTYRSRILSKLNLTSNAQLIDYAIRNG 203


>gi|119025235|ref|YP_909080.1| response regulator [Bifidobacterium adolescentis ATCC 15703]
 gi|118764819|dbj|BAF38998.1| response regulator containing a CheY-like receiver domain and a HTH
           DNA-binding domain [Bifidobacterium adolescentis ATCC
           15703]
          Length = 209

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ +E   +     G+T+  IA +L +S  +V  Y   A  KL A +R +A+A  +R
Sbjct: 146 SMRLSGKELQIIAGYARGFTTSTIAHQLNISEASVKTYARRAFEKLHAHSRAEAVAMCVR 205

Query: 231 FGYI 234
            G+I
Sbjct: 206 NGWI 209


>gi|7579039|gb|AAF64235.1|AF249735_3 putative response regulator [Pseudomonas putida]
          Length = 216

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R QA     + 
Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210


>gi|330872684|gb|EGH06833.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 215

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 202 AALLLQQL 209


>gi|325917495|ref|ZP_08179701.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536289|gb|EGD08079.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 222

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|325277013|ref|ZP_08142678.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324097849|gb|EGB96030.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 216

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R QA     + 
Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210


>gi|325105483|ref|YP_004275137.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
 gi|324974331|gb|ADY53315.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
          Length = 219

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--------ACYQVITDFLELFKKRSSAARNLTER 177
               GY+  T+    +  + I E H            +V+  F E    ++ + ++LT R
Sbjct: 108 AGATGYISKTTSSEKII-QAISELHLGGSPMSSQIARKVVASFQEHKVIKNDSCKDLTNR 166

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           E   L+    GY  +EI +KL +SV TV  ++ +   KL   + I+AI
Sbjct: 167 EFEILEFLSRGYRYKEIGDKLFISVETVRKHINNVYKKLQVNSAIEAI 214


>gi|308374292|ref|ZP_07435483.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu006]
 gi|308342443|gb|EFP31294.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu006]
          Length = 1077

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1008 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1067

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1068 LVQEAAQH 1075


>gi|283835899|ref|ZP_06355640.1| putative HTH-type transcriptional regulator YhjB [Citrobacter
           youngae ATCC 29220]
 gi|291068070|gb|EFE06179.1| putative HTH-type transcriptional regulator YhjB [Citrobacter
           youngae ATCC 29220]
          Length = 200

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 137 EFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                A    +  +     ++    D +   +      ++L+ R+   L +   G ++++
Sbjct: 102 PRDANAETFTLALNTVAMGMMFIPRDCITATESSGQNIKSLSARQREILTMLAAGESNKQ 161

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 162 IGRLLNISTGTVKAHLESLYQRLEVKNRTQAAMM 195


>gi|27381401|ref|NP_772930.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354569|dbj|BAC51555.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 274

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           LTERE   ++L  +G +++EI  +L  +  T+  +L +   KL+  NR    A AI
Sbjct: 196 LTERERQIMRLVSEGLSNKEIGRRLNTTDGTIKVHLHNIFQKLEISNRTVLAALAI 251


>gi|121605583|ref|YP_982912.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594552|gb|ABM37991.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 224

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 40/116 (34%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
              + L      +V        +   +     G                ++    LT R+
Sbjct: 108 TIRLALSRGAAAFVSKADTAEKIIKVIEQVLSGGLPDASAGMAHNTSANATPRPRLTPRQ 167

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L  +G +++ IA +L LS  TV  ++ +    L   +R Q +  A R G I
Sbjct: 168 CEVLDLLCEGLSNKVIARRLELSEFTVRGHVQAVLGLLGVSSRSQVMFAARRSGLI 223


>gi|120598578|ref|YP_963152.1| two component LuxR family transcriptional regulator [Shewanella sp.
           W3-18-1]
 gi|146293343|ref|YP_001183767.1| two component LuxR family transcriptional regulator [Shewanella
           putrefaciens CN-32]
 gi|120558671|gb|ABM24598.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
 gi|145565033|gb|ABP75968.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens CN-32]
 gi|319426643|gb|ADV54717.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens 200]
          Length = 220

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA+ 
Sbjct: 155 LTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|119775211|ref|YP_927951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767711|gb|ABM00282.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 238

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA+ 
Sbjct: 170 LTPQQYRVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 222


>gi|325069082|ref|ZP_08127755.1| two-component system regulator [Actinomyces oris K20]
          Length = 243

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L+ +V+        +  +         +     LT R+   L L   G ++ EI  +LG+
Sbjct: 148 LSPQVLARLVARMPRTASTGTS-RSTWTGEVEALTPRQREVLLLIARGLSNSEIEVELGI 206

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  T  +++ +   +L A +R Q +  A   G I
Sbjct: 207 TRATCRSHITALLARLGARDRAQLVIAAYEAGLI 240


>gi|320532874|ref|ZP_08033645.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134904|gb|EFW27081.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 152

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E A +L +SV TV  ++ +   KL   NR +    A+  
Sbjct: 90  DRLSTREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVAR 149

Query: 232 GYI 234
             +
Sbjct: 150 RIV 152


>gi|312959315|ref|ZP_07773832.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311286032|gb|EFQ64596.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 216

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           Q   +     + +++     +LT ++   L +  +G  +++IA +L +S  T+ A++ + 
Sbjct: 132 QAFEEINVSDEAKAARDGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAI 191

Query: 213 TVKLDAVNRIQAIAKAIRF 231
             KL    R QA     + 
Sbjct: 192 FRKLGVRTRTQAALLLQQL 210


>gi|258591000|emb|CBE67295.1| Two component transcriptional regulator, LuxR family [NC10
           bacterium 'Dutch sediment']
          Length = 216

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
             G    +     E  +  S     LT+RE   +     G T++EIA +L +S  TV A+
Sbjct: 131 LAGVLESLRHKTHETNRSFSETQEALTDREQEIVGWVIQGMTNKEIAARLEISDKTVKAH 190

Query: 209 LGSATVKLDAVNRIQAI 225
           L +   KL    R++  
Sbjct: 191 LSNIFSKLKISRRLELA 207


>gi|284989297|ref|YP_003407851.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284062542|gb|ADB73480.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 270

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
            P R    +    +        A +  +      +          + R  A   LTER+ 
Sbjct: 156 LPRRATAQRLADAVRALARQETALDSAVGRQLVRHMTGDPSQTTAEGR--ALDRLTERQR 213

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
               L  +G ++EEIA +L LS  TV ++L +   +LD   R Q      R
Sbjct: 214 DVATLVAEGLSNEEIASRLFLSPATVKSHLTAVMRRLDIRTRTQLAILLTR 264


>gi|146284530|ref|YP_001165483.1| two component LuxR family transcriptional regulator [Enterobacter
           sp. 638]
 gi|145320663|gb|ABP62809.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 202

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +    LTER+   LQL   G ++++IA+ L +S  TV  ++      L    R   +A 
Sbjct: 138 PAELDLLTERQREVLQLLVQGKSNKQIAQSLNISPFTVRIHVSQVLHVLGVPTRT--VAI 195

Query: 228 AIRFGYI 234
           A     I
Sbjct: 196 AQYSHLI 202


>gi|104781958|ref|YP_608456.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110945|emb|CAK15663.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 282

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 67/232 (28%), Gaps = 25/232 (10%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           ++ L   L+ +        F           P       E   +  +      +      
Sbjct: 28  VEALFAALNQLAPCQAITVFLY----PRKGLPSALFAKDEDGPWLPEGNVQKYLEGYYLL 83

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
             F      G++   ++         +  +              + + V L    +  V 
Sbjct: 84  CPFYRACMDGVVAGCYRLSDVAPDHFTRSEYYTAFYRHAHLEDELNYLVPLDAQLSIAVA 143

Query: 134 FTSEFLMLANEV---------------IIEAHGACYQVITDFLELFKKRSSAARN----- 173
             S   + + +V                   H     +   F     ++ SAA N     
Sbjct: 144 LGSTRRLGSRQVAELKCIAAWVVAVVRRHWGHLDAEALGGRFESALGRQISAALNNFGSS 203

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            LTERE    Q    G+++  +AE+LG+S  TV  +  +   KLD   + + 
Sbjct: 204 LLTERECHIAQYLLRGHSTRSLAERLGISEDTVKTHRKNLYAKLDIATQAEL 255


>gi|15596594|ref|NP_250088.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|9947343|gb|AAG04786.1|AE004569_4 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
          Length = 210

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146
           +       +  ++   L         I   +       G V+           +A E + 
Sbjct: 55  LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114

Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                    +V+  +     L  + S     LTER+   L+L   G +++EI   L +S 
Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227
           +TV  ++ S    LD  +R  A  K
Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|330807848|ref|YP_004352310.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375956|gb|AEA67306.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 217

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 159 DFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           + + + ++  +A+    +LT ++   L +  +G  +++IA +L +S  T+ A++ +   K
Sbjct: 135 EAVSVSEEAKAASEGLASLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRK 194

Query: 216 LDAVNRIQAIAKAIRF 231
           L+   R QA     + 
Sbjct: 195 LNVRTRTQAALLLQQL 210


>gi|315649798|ref|ZP_07902881.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315274772|gb|EFU38153.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 216

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 150 HGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           H    + +T  L    +  S +       LT  E + + L  +G +++EIA +L LS  T
Sbjct: 127 HPDIARKLTGMLRPAPQSVSQSDVLGSLGLTPAEKNIVGLIAEGLSNKEIAGQLYLSEGT 186

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           +  Y+     KL+  +R Q    
Sbjct: 187 IKNYVTEILGKLNLRDRTQIAIF 209


>gi|307727672|ref|YP_003910885.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307588197|gb|ADN61594.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 254

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 2/113 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           V         V         A+  + +      + +     L   +     NL+ R+   
Sbjct: 138 VPSPDASAERVNPAPTQQATASSAVQDTATTLAEPVAQGQALQPHQQHLLENLSPRQQDI 197

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++L   G+T++ IA +LG++  TV  +L      L   NR  AI  A+  G++
Sbjct: 198 MRLVHRGWTNKMIARELGVAEGTVKVHLSVIFRALGVHNRSTAI--AVVNGWL 248


>gi|167836083|ref|ZP_02462966.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 279

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           L        P    ++ ++   E +  L     G L        P  L       V+   
Sbjct: 63  LRALCQACAPTPVAALTDDASPEHAQALFD--AGVLGVIPRSTRP-HLIVRALEMVLLGG 119

Query: 137 EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            ++  +   + E        +V     +L +++ S    L+ R+   ++    G T++ I
Sbjct: 120 YYVPPSALNLTEPAARVRDGRVEAIISQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMI 179

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A  LG+S  TV  +L S   +L A NR  A+  AI  G++
Sbjct: 180 ARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|21233483|ref|NP_639400.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770447|ref|YP_245209.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115332|gb|AAM43282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575779|gb|AAY51189.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 222

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|328542623|ref|YP_004302732.1| Two component transcriptional regulator, LuxR family [polymorphum
           gilvum SL003B-26A1]
 gi|326412369|gb|ADZ69432.1| Two component transcriptional regulator, LuxR family [Polymorphum
           gilvum SL003B-26A1]
          Length = 233

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 14/218 (6%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + +       +   +     A    +        Q L         D+  +   L +  G
Sbjct: 23  IDDHPLFCDAL---VLTLRMAFALTDVRTANSLSQALGLLSGGLRPDAVVLDLNLPDVSG 79

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
            + L      L          +  I     L           AG    V     +     
Sbjct: 80  SEGLVALRRRL---------PDVPITVVSALMKPRLVSASLAAGACGFVPKDVDREHM-- 128

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
             +   M + EV I       +   + +   +   S    LT ++T  L+L   G  ++ 
Sbjct: 129 CAAFRKMWSGEVYIPDGYTPEEAEGELVLSQQDILSRLATLTPQQTKILKLVCAGKPNKL 188

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           IA  L ++  TV A++ +   KL A +R QA+  A   
Sbjct: 189 IAYDLSIAETTVKAHVTAILRKLGAHSRTQAVLVAKEA 226


>gi|324999601|ref|ZP_08120713.1| regulatory protein LuxR [Pseudonocardia sp. P1]
          Length = 245

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+L   G ++ EI  +L +S  TV  ++ +   KL+   R + +  A R G 
Sbjct: 185 LTDRENQVLRLLAVGLSNREIGGRLRISEATVKFHVRNLRDKLEVRRRTEIVYTAARQGI 244

Query: 234 I 234
           +
Sbjct: 245 V 245


>gi|303256885|ref|ZP_07342899.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|330998866|ref|ZP_08322593.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302860376|gb|EFL83453.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|329576080|gb|EGG57599.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 220

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT R+   L+L   G + + I  K+ LS  T+  ++ +     DA NR +A+  A R G+
Sbjct: 158 LTTRQCQVLKLLSQGDSIKTICRKMDLSEGTIKTHVTALYRAFDARNRTEALIAARRNGF 217


>gi|289570644|ref|ZP_06450871.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289544398|gb|EFD48046.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 285

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 197 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 256

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL   +R+Q   +A R G
Sbjct: 257 YTKLGLSSRLQLAQQAARRG 276


>gi|257482151|ref|ZP_05636192.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625831|ref|ZP_06458785.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647709|ref|ZP_06479052.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330987557|gb|EGH85660.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 77

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            + +E+   + S A+NLT+RE   L+ + +G T+ +IA  L L   T++ ++ SA  K+ 
Sbjct: 1   MNTMEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60

Query: 218 AVNRIQAIAKAIRFGY 233
             N+  A  +A   G 
Sbjct: 61  VCNKTAAAVQAALSGM 76


>gi|157375088|ref|YP_001473688.1| putative nitrate/nitrite response regulator; NarL [Shewanella
           sediminis HAW-EB3]
 gi|157317462|gb|ABV36560.1| putative nitrate/nitrite response regulator; NarL [Shewanella
           sediminis HAW-EB3]
          Length = 213

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-----------VITDFLE 162
           + F V          I  +           E +IE      Q           ++   L 
Sbjct: 81  VIFTVSDSESDVLQAIKFNTDGYLLKDSEPEELIEKINLAIQGEFVISNPLTQIMARSLR 140

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              K+ S   +LT+RE   L+L   G ++++IA KLG++  TV  ++ +   KL   +R+
Sbjct: 141 PNSKKVSPLESLTQRELQNLKLIAAGKSNKDIANKLGIAETTVKVHVKNLLKKLGLKSRV 200

Query: 223 QAIAKAIRFGY 233
           +A   A+    
Sbjct: 201 EAAVWAVEHKI 211


>gi|114568884|ref|YP_755564.1| LuxR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339346|gb|ABI64626.1| transcriptional regulator, LuxR family [Maricaulis maris MCS10]
          Length = 141

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            +T RE   L+    G +++E+A  LG+S +TV  ++     KLD  +RIQAI  A    
Sbjct: 65  AITPRELDVLEALVSGESNKELARTLGVSPNTVKTHIARLFDKLDVTSRIQAIETARDLR 124

Query: 233 YI 234
            I
Sbjct: 125 LI 126


>gi|331000094|ref|ZP_08323789.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329572978|gb|EGG54598.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 211

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +LT RE   + LA  G ++ EIA++LG+   TV  +  +A  KL   +R++A
Sbjct: 143 SLTNREKDVIVLAAKGASNREIADQLGIGQETVKMHCSNAYGKLGVRSRLEA 194


>gi|320012130|gb|ADW06980.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 241

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT---ERETSCLQLAG 186
           G  +  +   +   + +++      +++         RS     L+   +RE + L L G
Sbjct: 130 GTDLVAAVRTVATGQSMLDP-ATTTRLMESLRVPASTRSEGDERLSALSDREKAVLDLIG 188

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +G T+ +I+++L LS  TV  ++     KL    R+QA   A + 
Sbjct: 189 EGLTNRQISKRLYLSEKTVKNHISRLLSKLGVERRVQAAVIATKA 233


>gi|258654854|ref|YP_003204010.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558079|gb|ACV81021.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 209

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            +  +T+RE   L+   DG+++ EIA++L +S  TV  +      KL A +R  A+A  +
Sbjct: 144 PSLAVTDRELQILRGMTDGFSNLEIAKQLFVSEDTVKTHARRLFRKLGANDRAHAVALGM 203

Query: 230 RFGYI 234
           RF  +
Sbjct: 204 RFELV 208


>gi|190147124|gb|ACE62927.1| global response regulator [Serratia marcescens]
          Length = 218

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQAETPFSCLSERELQIMLMITKGKKVNEISEQLSLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|171060622|ref|YP_001792971.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170778067|gb|ACB36206.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 222

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +      LTERE   L     G+T  EI  +LGLS HT+  Y+     KL+  +R +A 
Sbjct: 152 DQLMPNVQLTEREREVLLRVAKGFTLPEIGVQLGLSRHTIADYVKQIYRKLNVSSRAEAA 211

Query: 226 AKAIRFGY 233
            +A R G 
Sbjct: 212 LEAQRLGL 219


>gi|90581277|ref|ZP_01237074.1| putative transcriptional regulator, LuxR family protein [Vibrio
           angustum S14]
 gi|90437516|gb|EAS62710.1| putative transcriptional regulator, LuxR family protein [Vibrio
           angustum S14]
          Length = 209

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 124 LGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
                 G++  +S+   L + +  +++      + I D    ++  +     LT ++   
Sbjct: 98  HSHGAFGFIPKSSDMRALISALNQVLDGEPFFPEDIADNNNAYRDLADKIATLTPQQYKV 157

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +  DG  +++IA +L +S  T+ A++ +   KL+  NR QA+    +   
Sbjct: 158 LGMLSDGLLNKQIAYELTVSEATIKAHMTAIFRKLEVKNRTQAVILLQQLDL 209


>gi|29654049|ref|NP_819741.1| GacA family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|161830987|ref|YP_001596631.1| transcriptional regulator [Coxiella burnetii RSA 331]
 gi|212212816|ref|YP_002303752.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|29541315|gb|AAO90255.1| response regulator [Coxiella burnetii RSA 493]
 gi|161762854|gb|ABX78496.1| transcriptional regulator [Coxiella burnetii RSA 331]
 gi|212011226|gb|ACJ18607.1| response regulator [Coxiella burnetii CbuG_Q212]
          Length = 211

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S    ++++RE   L +   G  +E IA+KL LS  TV+ Y  +   KL+  N  + I  
Sbjct: 143 SGVLDSISDREMEILLMMVRGVPTETIAQKLHLSPKTVSTYRVAIFKKLNVKNDAELILL 202

Query: 228 AIRFGYI 234
            +R G +
Sbjct: 203 GMRQGLL 209


>gi|325927987|ref|ZP_08189208.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541672|gb|EGD13193.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 222

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|325928170|ref|ZP_08189379.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541466|gb|EGD12999.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 236

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156
            L+ RL         I         +   V        LA            Q       
Sbjct: 65  DLTRRLMQRSPNSRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 124

Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                ++  L    +R++ A      LT RE   +QL  +G ++ +IA +L LSV TV  
Sbjct: 125 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 184

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  +  +KL+  +  Q    AI  G 
Sbjct: 185 HRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|308231817|ref|ZP_07413875.2| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu001]
 gi|308369777|ref|ZP_07419024.2| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu002]
 gi|308215965|gb|EFO75364.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu001]
 gi|308326515|gb|EFP15366.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu002]
          Length = 998

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 929 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 988

Query: 224 AIAKAIRF 231
            + +A + 
Sbjct: 989 LVQEAAQH 996


>gi|225407940|ref|ZP_03761129.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme
           DSM 15981]
 gi|225042534|gb|EEG52780.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme
           DSM 15981]
          Length = 887

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           EV++ AH    +    +L    + +     L++++T  L L   GY + EI+E  GLS+ 
Sbjct: 787 EVMLAAHSFGSR-HKGYLAEAGRETGRPVKLSKQQTRMLTLLAQGYKNAEISEMTGLSIP 845

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+ ++   A  KL   N + A+ KA   G I
Sbjct: 846 TIKSHTSLAYKKLGVNNAMDAVLKAKELGLI 876


>gi|167625041|ref|YP_001675335.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167355063|gb|ABZ77676.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 203

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L +   +    L+ERE    QL   G T++++A +L +++ T+  +      KL   N 
Sbjct: 129 HLKRTNQALIDTLSEREAQIFQLVIAGNTNKQMANELCVAIRTIEVHRSKLMTKLGVNNL 188

Query: 222 IQAIAKA 228
            + +  A
Sbjct: 189 AELVKLA 195


>gi|145296361|ref|YP_001139182.1| hypothetical protein cgR_2276 [Corynebacterium glutamicum R]
 gi|140846281|dbj|BAF55280.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 687

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
           +      + F       R+G       +FT    +      + A     +   +      
Sbjct: 566 MPAYEARILFEYGLVLRRMGRRSQAAEMFTHAEEVFTA---MGAVTLAARCHGERRVAGV 622

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +A+ LT +E     L  DG +++E+A +L LS  TV  +L     KL   +R + 
Sbjct: 623 GPRRSAQGLTPQEEQITALVVDGCSNQEVARELSLSAKTVEYHLTRVYKKLGVSSRGEL 681


>gi|83646746|ref|YP_435181.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634789|gb|ABC30756.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 219

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                   +      +L+ERE     +  + +  +EI++KL LS  TVN+Y      KL+
Sbjct: 133 MALRPFDAEEGDVFESLSEREMQIAMMIVNCHKVQEISDKLCLSPKTVNSYRYRIFEKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
             + ++    AIR G +
Sbjct: 193 INSDVELTLLAIRHGML 209


>gi|71736868|ref|YP_273631.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557421|gb|AAZ36632.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 208

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLV 208


>gi|313499425|gb|ADR60791.1| Putative metal dependent phosphohydrolase [Pseudomonas putida
           BIRD-1]
          Length = 479

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 7/114 (6%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P          +   +   +   E        C  VI       +     +  LT RE S
Sbjct: 372 PAHSESEAARLLKQDASRGLFDAE-------ICTAVIAAARGERRLPQPKSTLLTTRECS 424

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L     G +++E+A +L +S  TV  ++ S   KL    R  A  K +  G I
Sbjct: 425 ILMEISRGASNKEVARRLEISPSTVRTHMESIFRKLGCSTRAAATLKGLTLGLI 478


>gi|294626355|ref|ZP_06704957.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599356|gb|EFF43491.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 236

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156
            L+ RL         I         +   V        LA            Q       
Sbjct: 65  DLTRRLMQRSPNSRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 124

Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                ++  L    +R++ A      LT RE   +QL  +G ++ +IA +L LSV TV  
Sbjct: 125 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 184

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  +  +KL+  +  Q    AI  G 
Sbjct: 185 HRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|229820103|ref|YP_002881629.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566016|gb|ACQ79867.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 208

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A  +V+ D   L ++R++       LT  E   L+L  +G T+ +IAE+LG++  TV  +
Sbjct: 120 AAGRVLLDERSLTRRRAAHEDPTSALTPSERRVLELVAEGLTNRDIAERLGVAEKTVKNH 179

Query: 209 LGSATVKLDAVNRIQAIAK 227
           + S   K+    R QA+A 
Sbjct: 180 VTSMLSKMGLQRRTQAVAW 198


>gi|146305270|ref|YP_001185735.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           ymp]
 gi|145573471|gb|ABP83003.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           ymp]
          Length = 474

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQL 184
           +  +    +  ++L             Q +       +   +       L+ERET  LQ 
Sbjct: 365 RAAFSDEQAARVLLDEAEQGRFDPRACQAVISAAHGEQAPLAGKPGNGLLSERETQILQR 424

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +++E+A  LG+S  TV  ++ S   KL    R  A  KA+  G I
Sbjct: 425 ISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGVI 474


>gi|111025634|ref|YP_708054.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110824613|gb|ABG99896.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1084

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 151  GACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               Y +    L          +  LT+RE     L  +G T++ IA++L +S  TV +++
Sbjct: 1000 AIAYALHEQPLNASDAPVVDRSVRLTKRERQVADLIAEGLTNQAIADRLVISPRTVQSHV 1059

Query: 210  GSATVKLDAVNRIQAIAK-AIRFG 232
                 KL   +R Q  A  A R G
Sbjct: 1060 EHILAKLGFTSRTQIAAWVAERIG 1083


>gi|288919617|ref|ZP_06413946.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349015|gb|EFC83263.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 233

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++        +  +A  +LT +E         G ++ EIA  +  S  TV  ++G+   K
Sbjct: 155 LLDHEFRAPAQPPAAFGSLTGKEREVFFAVVRGLSNTEIARLVFASESTVKTHVGAILRK 214

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R+Q +  A   G +
Sbjct: 215 LALRDRVQIVVFAYEHGVV 233


>gi|260427555|ref|ZP_05781534.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260422047|gb|EEX15298.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 233

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT ++   L L  +G  +++IA  L ++  TV A++ +   KL   +R QA+
Sbjct: 155 DALERLATLTGQQARILSLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVHSRTQAV 214

Query: 226 AKAIRF 231
             A   
Sbjct: 215 LIAQEA 220


>gi|218892730|ref|YP_002441599.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|218772958|emb|CAW28770.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 210

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146
           +       +  ++   L         I   +       G V+           +A E + 
Sbjct: 55  LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114

Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                    +V+  +     L  + S     LTER+   L+L   G +++EI   L +S 
Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPGLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227
           +TV  ++ S    LD  +R  A  K
Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|167816179|ref|ZP_02447859.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           91]
          Length = 86

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + + A R L+ RE   ++L   G T  +IA + G S+ TV+ +  +A  KL   + +   
Sbjct: 18  RGTDAPRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLF 77

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 78  MYATENGLV 86


>gi|167722362|ref|ZP_02405598.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
          Length = 180

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 8/114 (7%)

Query: 26  NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85
            ++  +NFA                 C L  +  +     +       D  + H     +
Sbjct: 31  RQLGFKNFAY-----RHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHCRCRTV 85

Query: 86  PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
           P+IW          S  +L            G++ PV         +   ++  
Sbjct: 86  PLIWHDDLY---TTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDP 136


>gi|120402438|ref|YP_952267.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955256|gb|ABM12261.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 212

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                      +   L    +R+     L+ +E   L L G+G T+++IA+++ L+  TV
Sbjct: 122 RSLLDNRAAAALMSRLRDTAERADPLLGLSSQERVLLDLLGEGLTNKQIADRMFLAEKTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             Y+     KL    R QA     R 
Sbjct: 182 KNYVSRLLAKLGMERRTQAAVFVSRL 207


>gi|77404774|ref|YP_345347.1| DNA-binding HTH domain-containing proteins [Rhodobacter sphaeroides
           2.4.1]
 gi|77390424|gb|ABA81606.1| DNA-binding HTH domain-containing proteins [Rhodobacter sphaeroides
           2.4.1]
          Length = 213

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 12/183 (6%)

Query: 52  CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111
            E++++                D  L           W ++  E          +   G 
Sbjct: 33  VEINHFPAPLTSRYVARGMALKDPLLQWTFMNCGKSRWSALPAEDPAG-----VMVEYGQ 87

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
                G    +      +GYV     F     E   E      +++   L + ++R++  
Sbjct: 88  HGLTYGCVISI--LSLSDGYVRTVGIFGRADREYTDEEMLRIEKLL---LGMHRRRTAP- 141

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT  +   L+L  DGY  + IA  LG++   V A L SA  +  A   +QA+  A+  
Sbjct: 142 -RLTTSQIEALRLLADGYRYKRIAHILGITESAVKARLKSAVSQTGARTPVQALQIAMNA 200

Query: 232 GYI 234
           G +
Sbjct: 201 GLL 203


>gi|170745123|ref|YP_001766580.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170658724|gb|ACB27778.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 198

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 109 EGGLLPFAGI----AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
              ++  +G+         L      ++    +       V+ E              L 
Sbjct: 76  AARIVVVSGLDLPDTVSTALAHGACAFLSKA-DRPDRMMTVLREMLARSSAAPRAGAALC 134

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                    LT R+   L L G G +++ I   LGLS HTV  ++      L    R +A
Sbjct: 135 P-------TLTPRQAEVLTLVGRGLSNKMIGRSLGLSEHTVRGHVQGLLSVLGVTRRAEA 187

Query: 225 IAKAIRFGYI 234
           + KA + G I
Sbjct: 188 VFKAQQLGLI 197


>gi|326202031|ref|ZP_08191901.1| LOW QUALITY PROTEIN: transcriptional regulator, LuxR family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987826|gb|EGD48652.1| LOW QUALITY PROTEIN: transcriptional regulator, LuxR family
           [Clostridium papyrosolvens DSM 2782]
          Length = 266

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARN 173
            ++ P+       G +   S    +  E+ +      Y++  +F +  K+ ++       
Sbjct: 140 MLSVPIASKKENLGCISILSRENCINQEIALIVQLLSYKISNEFTK-NKRINNNYLCDVR 198

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+ +   L++   G T +  + +LG+S+ TV  +  +   KL+  + +QAI KA+++G 
Sbjct: 199 LTDSQIRVLKVLAWGCTDKCASAELGISLGTVRYHKTNIFRKLNVESSVQAIMKALKYGI 258

Query: 234 I 234
           I
Sbjct: 259 I 259


>gi|313204637|ref|YP_004043294.1| two component transcriptional regulator, luxr family [Paludibacter
           propionicigenes WB4]
 gi|312443953|gb|ADQ80309.1| two component transcriptional regulator, LuxR family [Paludibacter
           propionicigenes WB4]
          Length = 211

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+  DF+   K       +L+ RE   + L   G   ++IA  L LS+ TV  Y   
Sbjct: 129 LAEQLAFDFMP-DKGEQLPHESLSNREQEIMYLLASGKKVKDIAADLQLSISTVFTYRVR 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   + ++    AI    +
Sbjct: 188 IFEKLKIKSNVELTHYAITNKLV 210


>gi|296138738|ref|YP_003645981.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026872|gb|ADG77642.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 214

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +++ E+ ++      +  +         + A   LT RE         G T+ EIA++
Sbjct: 121 DALISPELTVDLLARNRRAGSR----EPAAAGAIAELTPREREVAACVARGRTNAEIADE 176

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQ 223
           L +S+ TV  +L +   +L A NR++
Sbjct: 177 LVISLGTVKTHLSAIGQRLGARNRVE 202


>gi|290961885|ref|YP_003493067.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260651411|emb|CBG74533.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 223

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLEL-------FKKRSSAARN 173
           L      Y+   ++ + +A  +   A G      QV    L          +        
Sbjct: 103 LRAGARSYLTKDADRMHIAATLHSAAAGLSVLHPQVQATLLAAASGTAVSDRPARKLPDG 162

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G  + EIA++L LS +TV  ++     K  + +R  A   A R G 
Sbjct: 163 LTRREAEILTLIAQGLNNAEIADRLFLSGNTVKTHINRVFAKTRSRDRAAATLYARRHGL 222


>gi|256419151|ref|YP_003119804.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256034059|gb|ACU57603.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 253

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKAIRF 231
           L+ RE   LQL  +G +S+EIA +L +S++TV+ +  +   KL   N I+A  IA+AI  
Sbjct: 193 LSFREKQLLQLIRNGKSSKEIATQLSISINTVSRHRQNILEKLHVKNSIEACRIAEAIEL 252


>gi|73662755|ref|YP_301536.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495270|dbj|BAE18591.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 201

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT +E   L+  G+G+TS+EI++ L LS  T+  Y  +   KLDA NR +A   A   G
Sbjct: 140 PLTPKEQLVLREIGEGHTSKEISKHLFLSYGTIRNYTSTIIDKLDAENRFEAWNIARNKG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|295676996|ref|YP_003605520.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
 gi|295436839|gb|ADG16009.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 210

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEE 193
           E ++ A   +   H    + + D L     + +       L+ERE         G    E
Sbjct: 109 EEIVRAIRSVARGHRYLSEAVADTLADNLDKPAAGRPHEALSEREFQIFCKLAAGQLPTE 168

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IAE+L LSV TV+ Y      K+   N       AI+ G I
Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209


>gi|320012198|gb|ADW07048.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 987

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 51/184 (27%), Gaps = 16/184 (8%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
               +      E  G                  +       +     +     +   +G 
Sbjct: 807 SAWSERAREEAERLGLPVQRASAMRSA----AQLASHHGATAEAATLLSEAVEVCARSGA 862

Query: 119 AF----PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--- 171
            F     + L         F +    +  +    A G    ++    EL +  + +A   
Sbjct: 863 VFWEARSLLLAAPVMTAAGFATRGASMWEQGRRLATGGGAGLLIGLSELTRPPAPSASSA 922

Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                 +LT RE     +  +G T++ IA +L LS  TV  ++     K     R    A
Sbjct: 923 VPTWLASLTAREREVAGMVAEGLTNQAIATRLFLSPRTVETHVSRVFRKTGVATRAGLAA 982

Query: 227 KAIR 230
              R
Sbjct: 983 LMAR 986


>gi|256828839|ref|YP_003157567.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578015|gb|ACU89151.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 215

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 151 GACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                ++ D+L + ++R      +NLT RE   ++   DG+ S+EIAE L +S+ TV+ +
Sbjct: 130 HLAKVIVRDYLLVNRQRKALPPMKNLTAREKEIVRHIIDGWKSKEIAESLFISIKTVDKH 189

Query: 209 LGSATVKLDAVNRIQA 224
             +   KL   +  Q 
Sbjct: 190 RSNILGKLGINSSNQL 205


>gi|164504820|gb|ABY59648.1| UvrY [Yersinia ruckeri]
          Length = 218

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLEPQVDTPFACLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|146310497|ref|YP_001175571.1| two component LuxR family transcriptional regulator [Enterobacter
           sp. 638]
 gi|145317373|gb|ABP59520.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 210

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 17/162 (10%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           I    +      E+   L  RL      F  I   +             G   + ++   
Sbjct: 49  IDVAVMDVAMPDENGLSLLKRLRQQRPGFRAIILSIYDTPAFVQSALDAGASGYLTKRCG 108

Query: 141 LANEVIIEA--------HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
              E +++A        H  C   +   L   +  S     LT RE     L   G + +
Sbjct: 109 P--EELVQAVRSVGMGGHYLCADAV-KALRGGQPVSKVLDVLTPREREVFDLLVKGESVK 165

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            IA  L LS  TV+ +  +   KL   + I+ +  A+    +
Sbjct: 166 AIAFTLELSHKTVHVHRANVLGKLQCSSTIELVHFALDNQLL 207


>gi|26000239|gb|AAN75561.1| putative positive transcription regulator BvgA [Bordetella avium
           197N]
          Length = 207

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE + LQL   G T+++IA+ + LS  T++ Y      KL+A   ++ I  A R  
Sbjct: 146 SLSNRELAVLQLLAQGLTNKDIADSMFLSNKTISTYKTRLLQKLNATTLVELIDMAKRNN 205

Query: 233 Y 233
            
Sbjct: 206 L 206


>gi|88191931|pdb|1ZLJ|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191932|pdb|1ZLJ|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191933|pdb|1ZLJ|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191934|pdb|1ZLJ|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191935|pdb|1ZLJ|E Chain E, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191936|pdb|1ZLJ|F Chain F, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191937|pdb|1ZLJ|G Chain G, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191938|pdb|1ZLJ|H Chain H, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
          Length = 78

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT++E + L L  +G T+++IA++  L+  TV  Y+     KL    R QA   A 
Sbjct: 7   PLSGLTDQERTLLGLLSEGLTNKQIADRXFLAEKTVKNYVSRLLAKLGXERRTQAAVFAT 66

Query: 230 RF 231
             
Sbjct: 67  EL 68


>gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 305

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 65/214 (30%), Gaps = 13/214 (6%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
             +   ++A      T    +D   R ++   L N                 D    H  
Sbjct: 95  EHVVRALEAGGVDYLTKPINID-ELRARIRVHLSN------ARSAQSARVALDAAGRHLL 147

Query: 82  --SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
              G   + W + Q   ++ ++      L       A      R    + G         
Sbjct: 148 AVRGDGTVRWSTPQATRLVNAATGSDDGLAFVAGRIAEW-MRERSPGERQGTFTLQRASQ 206

Query: 140 MLANEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
                  + A GA   +     E      +       LT+RE+  L     G ++ +I E
Sbjct: 207 TGLQISYLGAIGANEYLFRLTAENGMSDDETLRQHFRLTQRESEVLLWIAKGKSNRDIGE 266

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LGLS  TV  +L    VKL   NR  A  KA +
Sbjct: 267 ILGLSARTVTKHLEQIYVKLGVENRASAAVKATQ 300


>gi|322836842|ref|YP_004210756.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9]
 gi|321165929|gb|ADW71629.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 207

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +  S+ A  LTERE   L+ AG+G ++ E+A  L L+  T+  YL  A  KL A NR 
Sbjct: 136 AAESWSADAGPLTEREREVLRRAGEGESTAELARTLRLTEGTIRNYLSEAISKLGAHNRT 195

Query: 223 QAIAKAIRFGYI 234
           +A   A   G++
Sbjct: 196 EAARLARAKGWL 207


>gi|298253154|ref|ZP_06976946.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
 gi|297532549|gb|EFH71435.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
          Length = 246

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
             F+ L K RS +   L  +E   + L   G T+ +IA +LGL  +T+N ++     KL 
Sbjct: 145 ESFIRLSKSRSRSV--LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLH 202

Query: 218 AVNRIQAI 225
             NR+QAI
Sbjct: 203 VSNRVQAI 210


>gi|283782679|ref|YP_003373433.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
 gi|283441376|gb|ADB13842.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
          Length = 246

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
             F+ L K RS +   L  +E   + L   G T+ +IA +LGL  +T+N ++     KL 
Sbjct: 145 ESFIRLSKSRSRSV--LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLH 202

Query: 218 AVNRIQAI 225
             NR+QAI
Sbjct: 203 VSNRVQAI 210


>gi|186473154|ref|YP_001860496.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184195486|gb|ACC73450.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 209

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 38/113 (33%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           + L   + G   + S+   L   +                     ++     L+ RE   
Sbjct: 96  MSLHTQQAGANGYVSKGRELTEMLTAARTVLLGFDCFPANAPHANKAGGLDVLSPREMEV 155

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LQ    G +++EIA +L LS  TV+ Y      KL   +    I  A     I
Sbjct: 156 LQYLARGVSNKEIASRLFLSDKTVSTYKTRLCEKLGLSSLAALIEFATLHKLI 208


>gi|111020008|ref|YP_702980.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110819538|gb|ABG94822.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1035

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%)

Query: 144  EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
            E +       Y +           + A+  LT+RE     L  +G T++ IA++L +S  
Sbjct: 945  EQLGFDAAIAYALHEQPSATSTPTADASTRLTKRERQVADLIAEGLTNQAIADRLVISPR 1004

Query: 204  TVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            T   ++     KL   +R Q  A  +  
Sbjct: 1005 TAQGHVEHILAKLGFTSRTQVAAWVVER 1032


>gi|159185575|ref|NP_357562.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159140709|gb|AAK90347.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 747

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
               F+  +++V          V +               L++RE   LQL   G ++++
Sbjct: 653 RIRSFIETSSDVRTALSIFADSVNSPQARALHG------GLSQREAQMLQLLASGMSNKK 706

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IA+ L +S  TV  +LG+   KLD   R +AI  A    ++
Sbjct: 707 IAQTLNISEVTVKFHLGNLFRKLDCNRRSEAIRAAKALDWL 747


>gi|332530777|ref|ZP_08406704.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
 gi|332039764|gb|EGI76163.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
          Length = 208

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           +++           ++  +L   R +    LT RE+  L+    G  +++IA+ LG+S+ 
Sbjct: 117 DLVERMLDRARAAFSEH-QLAADRDALLAKLTTRESQVLERIVAGRLNKQIADDLGISIK 175

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAI 229
           TV A+  +   KL+A      +  A+
Sbjct: 176 TVEAHRANIMEKLNANTVADLLKIAL 201


>gi|315127232|ref|YP_004069235.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315015745|gb|ADT69083.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 198

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 37/96 (38%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
            +F      +    +          +   L+  +K +    NLT++E   L L   G  S
Sbjct: 91  ELFNRGLDAIKQGELWFPRTISDIWMRQMLDTEQKNALQTANLTDKEIKVLNLLFSGLHS 150

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             IA+ L +S  TV  +L     K+   N+ QAI  
Sbjct: 151 SAIADSLFISEATVRVHLHKIYKKIAVKNKQQAIRW 186


>gi|326773003|ref|ZP_08232287.1| two-component system, regulatory protein [Actinomyces viscosus
           C505]
 gi|326637635|gb|EGE38537.1| two-component system, regulatory protein [Actinomyces viscosus
           C505]
          Length = 243

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L+ +V+           T         +     LT R+   L L   G ++ EI  +LG+
Sbjct: 148 LSPQVLARLVARMPST-TSTGTSRSTWAGEVEALTPRQREVLLLIARGLSNSEIEVELGI 206

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +  T  +++ +   +L A +R Q +  A   G I
Sbjct: 207 TRATCRSHITALLARLGARDRAQLVIAAYEAGLI 240


>gi|223935792|ref|ZP_03627707.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895393|gb|EEF61839.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 37/86 (43%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
            +G   +++                L+ RE   LQ    G   +EIAE++GLS HTVN Y
Sbjct: 134 MNGRIARLVLGAFAQQNSTPHNDYGLSAREKDILQYMVKGLIKKEIAEEMGLSYHTVNNY 193

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     KL    R  A+AK +    +
Sbjct: 194 LRRIYDKLHVHTRGGAVAKTVEEKLL 219


>gi|254255320|ref|ZP_04948636.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901057|gb|EAY71807.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 252

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 35/104 (33%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                   F        + A  A  +             S    L+ RE   +     G 
Sbjct: 134 AMDFLAKPFREQDMLDAVAAALARDERCRSAQRALGDLRSRYATLSAREREVMAFVASGL 193

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +++IA ++ LS  TV  + G A  K+DA +    + KA   G 
Sbjct: 194 MNKQIAAEMNLSEITVKIHRGQAMKKMDARSLADLVRKAEALGI 237


>gi|71905906|ref|YP_283493.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71845527|gb|AAZ45023.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 221

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                LT+R+   L L   G ++ +IA++LGLS  TV  +  +    L   +R QA+   
Sbjct: 151 PDEIGLTDRQGQVLALMVRGLSNRDIADQLGLSEGTVKIHATAVFKALGVSSRTQALVAV 210

Query: 229 IRFGY 233
            R+G 
Sbjct: 211 ARYGI 215


>gi|21244897|ref|NP_644479.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626449|ref|ZP_06705049.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294667013|ref|ZP_06732241.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21110608|gb|AAM39015.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|292599248|gb|EFF43385.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603230|gb|EFF46653.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 222

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|27382417|ref|NP_773946.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355588|dbj|BAC52571.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 211

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE S +QL  +G+T+  ++  L LSV TV  +  SA  KL   +  + +  AIR   
Sbjct: 149 LTSREQSVVQLIAEGHTNRSMSVILKLSVKTVETHRASAMRKLGMSSTAELVRYAIRKKL 208

Query: 234 I 234
           +
Sbjct: 209 V 209


>gi|115526486|ref|YP_783397.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520433|gb|ABJ08417.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 247

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 12/160 (7%)

Query: 84  LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
              + W+    E               G +    I   V L   +    +   +      
Sbjct: 78  FATVSWREEAGERKYFLIAATPRTEHDGTILVLHIDLSVLLRGRRELSTLMIGQGPAAFA 137

Query: 144 EVIIEAHGACYQVITDFLELFKKR------------SSAARNLTERETSCLQLAGDGYTS 191
           ++     G     IT+ L     R                 +LT  +   L    +G ++
Sbjct: 138 QMEAAMLGVVRGAITEALGASNGRGTKTATIIHGTDDRVIDDLTRPQIELLSYLANGLSN 197

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++IA++ G+S++TV + + +   KL+  NR QA   A+R 
Sbjct: 198 QQIAKERGMSINTVKSQVANVIQKLNVANRTQAALFAVRN 237


>gi|309775442|ref|ZP_07670445.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916831|gb|EFP62568.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 209

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L ERE   +QL   G  ++E+A+ L LS  TV  YL S   KL   +R Q      + 
Sbjct: 147 LNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSSLLEKLQLRDRTQLAIFYYQN 204


>gi|326771785|ref|ZP_08231070.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
 gi|326637918|gb|EGE38819.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
          Length = 203

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 54/169 (31%), Gaps = 8/169 (4%)

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            GD+ L         +    +  +         +  + G  LP   +             
Sbjct: 37  RGDEVLDAVRKH--AVDVALVDIDMPGRDGLAATAEVVGSDLPCRCLIVTTFGRPGYLSR 94

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLA 185
            +       +  +   EA     + +   L +     +          LTERE   L  A
Sbjct: 95  GMEAGAAGFIVKDTPPEALAEAIRKVHAGLRVIDPELAQESVLLGPNPLTEREKEVLLAA 154

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA +L L   TV  YL SA  K  A NR +A   A   G++
Sbjct: 155 ATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203


>gi|289444014|ref|ZP_06433758.1| probable transcriptional regulatory protein [Mycobacterium
           tuberculosis T46]
 gi|308369731|ref|ZP_07666793.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu002]
 gi|289416933|gb|EFD14173.1| probable transcriptional regulatory protein [Mycobacterium
           tuberculosis T46]
 gi|308326618|gb|EFP15469.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu002]
          Length = 282

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 194 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 253

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL   +R+Q   +A R G
Sbjct: 254 YTKLGLSSRLQLAQQAARRG 273


>gi|284032256|ref|YP_003382187.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811549|gb|ADB33388.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 217

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   L+ RE   L L G+G ++ +IA +L LS  T+  ++      LD  NR Q  
Sbjct: 151 DPDPQLEALSGREREILALLGEGLSNADIARRLYLSEGTIKGHVSRLMADLDCQNRTQLA 210

Query: 226 AKA 228
            +A
Sbjct: 211 LRA 213


>gi|229588732|ref|YP_002870851.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229360598|emb|CAY47455.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 216

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           Q   +     + +++     +LT ++   L +  +G  +++IA +L +S  T+ A++ + 
Sbjct: 132 QAFEEINVSDEAKAARDGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAI 191

Query: 213 TVKLDAVNRIQAIAKAIRF 231
             KL    R QA     + 
Sbjct: 192 FRKLGVRTRTQAALLLQQL 210


>gi|254182439|ref|ZP_04889033.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|184212974|gb|EDU10017.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
          Length = 215

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|148976347|ref|ZP_01813053.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145964170|gb|EDK29426.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 178

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 37/66 (56%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               K S     LT+RE   ++L GDG ++ +IA+ L +S +TV A+L +   K+   NR
Sbjct: 101 RQCAKTSPYYLKLTKREQQIIKLLGDGASNTQIADTLYVSENTVKAHLHNTFKKIKVKNR 160

Query: 222 IQAIAK 227
           +QA+  
Sbjct: 161 LQALIW 166


>gi|24371949|ref|NP_715991.1| LuxR family DNA-binding response regulator [Shewanella oneidensis
           MR-1]
 gi|24345792|gb|AAN53436.1|AE015483_2 DNA-binding response regulator, LuxR family [Shewanella oneidensis
           MR-1]
          Length = 198

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L ++E   L+ A +G ++ EIA+ L ++  TV  YL  A  KL+A NR
Sbjct: 126 ELAMMAIGDIDPLNDKERRALRFASEGKSTAEIADMLFIAEGTVRNYLSEAIAKLNASNR 185

Query: 222 IQAIAKAIRFGYI 234
           I A   A + G++
Sbjct: 186 IDAARIAKQKGWL 198


>gi|331010111|gb|EGH90167.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 208

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLV 208


>gi|300722895|ref|YP_003712190.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297629407|emb|CBJ90008.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
          Length = 229

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 31/66 (46%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  +   ++RE   +     GY++++IAE+L +S  T++ ++ +   K +  +R   +  
Sbjct: 145 TPPSEIFSKREWEIIFYIMQGYSTKDIAERLFVSYRTISNHIQNVYKKTETNSRKSLVDY 204

Query: 228 AIRFGY 233
                 
Sbjct: 205 CYEHNI 210


>gi|289666156|ref|ZP_06487737.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670749|ref|ZP_06491824.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 222

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|224536867|ref|ZP_03677406.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521533|gb|EEF90638.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 215

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 166 KRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           ++        L++RE   L+   +G  S EIA KL +SV+TV  +     +KL+A N   
Sbjct: 143 RKLPPEMPQVLSKREQEVLKCISEGLKSNEIATKLYISVNTVEFHRKQIMLKLEAKNASD 202

Query: 224 AIAKAIRFGYI 234
            + KAI+ G +
Sbjct: 203 MLIKAIKSGVL 213


>gi|207724571|ref|YP_002254968.1| transcription regulator prhj protein [Ralstonia solanacearum MolK2]
 gi|206589793|emb|CAQ36754.1| transcription regulator prhj protein [Ralstonia solanacearum MolK2]
          Length = 175

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 42/100 (42%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +    + + +   L  E      G   +      E      +    LT R+   L+ A  
Sbjct: 62  EAAGALPSGQLQPLTLEQTYAMLGRILEARRHGCEPRPDTGARLSALTPRQHDILREAAH 121

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G ++ EIA+ L +SV TV +++    ++L+A NR +  A 
Sbjct: 122 GKSNVEIAQTLHISVETVKSHVRQILMRLEARNRTELAAI 161


>gi|187929029|ref|YP_001899516.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187725919|gb|ACD27084.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 211

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176
            P+ +   K G V F           + E              + +++ +A      LT 
Sbjct: 97  VPLAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARSEDSVAREQKAAKDLLGRLTT 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           RE   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|83593567|ref|YP_427319.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576481|gb|ABC23032.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 212

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT R+   L     G ++ +IA+ + LS  TV  ++G     L A +R  A+A A R G
Sbjct: 151 PLTPRQKEVLAHIDAGLSNRQIAQAMTLSEATVKMHIGRLFKALGAQSRTDALAVARRKG 210

Query: 233 YI 234
            +
Sbjct: 211 ML 212


>gi|78047210|ref|YP_363385.1| two-component LuxR family response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78035640|emb|CAJ23331.1| putative two-component response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 236

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156
            L+ RL         I         +   V        LA            Q       
Sbjct: 65  DLTRRLMQRSPNSRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 124

Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                ++  L    +R++ A      LT RE   +QL  +G ++ +IA +L LSV TV  
Sbjct: 125 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 184

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  +  +KL+  +  Q    AI  G 
Sbjct: 185 HRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|27380999|ref|NP_772528.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354165|dbj|BAC51153.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 217

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                  + ++    L+ ++   L +  +G  +++IA +L ++  TV  ++ +   KL  
Sbjct: 137 SIQSADVELAARMATLSAQQLRILAMIVEGKLNKQIAGELDIAEQTVKGHVSTILRKLGV 196

Query: 219 VNRIQAIAKAIRF 231
            +R QA   A R 
Sbjct: 197 GSRTQAAVLAERL 209


>gi|223936168|ref|ZP_03628081.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895030|gb|EEF61478.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G  ++++A +LG+S+ T+  +      KL+  +       AI  G 
Sbjct: 156 LTPREAEVLVLIAKGQPNKQMASELGISIKTIEKHRQQVMNKLNIHDIAGLTRYAISKGI 215

Query: 234 I 234
           I
Sbjct: 216 I 216


>gi|221135484|ref|ZP_03561787.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Glaciecola sp. HTCC2999]
          Length = 216

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I +  E F K +    +LT  +   L    DG  +++I   L ++  TV A++ +   KL
Sbjct: 133 IEEVDEAFSKLADNVASLTPSQYKVLCYMRDGLLNKQIGYNLDIAEATVKAHVTAIFRKL 192

Query: 217 DAVNRIQAIAKAIRFGY 233
              NR QA+  A +   
Sbjct: 193 GINNRTQAVLIASQLEL 209


>gi|19553593|ref|NP_601595.1| DNA-binding HTH domain-containing protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391237|ref|YP_226639.1| ATP-dependent transcription regulator LuxR [Corynebacterium
           glutamicum ATCC 13032]
 gi|21325165|dbj|BAB99787.1| DNA-binding HTH domains [Corynebacterium glutamicum ATCC 13032]
 gi|41326577|emb|CAF21059.1| ATP-dependent transcriptional regulator, LuxR family
           [Corynebacterium glutamicum ATCC 13032]
          Length = 687

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165
           +      + F       R+G       +FT    +      + A     +   +      
Sbjct: 566 MPAYEARILFEYGLVLRRMGRRSQAAEMFTHAEEVFTA---MGAVTLAARCHGERRVAGV 622

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +A+ LT +E     L  DG +++E+A +L LS  TV  +L     KL   +R + 
Sbjct: 623 GPRRSAQGLTPQEEQITALVVDGCSNQEVARELSLSAKTVEYHLTRVYKKLGVSSRGEL 681


>gi|319901028|ref|YP_004160756.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
 gi|319416059|gb|ADV43170.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
          Length = 200

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L+ RE   L L   G+ ++EIA+KL +S+ TV ++  + T KL   +       AI 
Sbjct: 132 GHELSAREIEVLVLVTKGFINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIYAIM 191

Query: 231 FGYI 234
            GY+
Sbjct: 192 HGYV 195


>gi|302866185|ref|YP_003834822.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502743|ref|YP_004081630.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302569044|gb|ADL45246.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315409362|gb|ADU07479.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 212

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + A + +++      +V+       ++     ++LTE+E   L+   +G T+ EIA K
Sbjct: 116 RRVAAGQSLLDP-AITTRVLERIRSGVEQ-PRELKSLTEQERRILEYVAEGLTNREIAGK 173

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L+  TV  Y+ S   KL    R QA   A R 
Sbjct: 174 MFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207


>gi|271965654|ref|YP_003339850.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270508829|gb|ACZ87107.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 963

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +  A     +           R  A  +L+ R+    +LA  G T++EIA ++ LS  T
Sbjct: 874 DLDRATRLARRWGLRPAPPAPSRDGANDSLSARQQQVARLAAAGLTNQEIAREMFLSPKT 933

Query: 205 VNAYLGSATVKLDAVNRIQAIA 226
           V+ +LG+A  K  A +R +   
Sbjct: 934 VDKHLGAAMRKFGARSRTELAR 955


>gi|255034530|ref|YP_003085151.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254947286|gb|ACT91986.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 210

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +V+  F    +  +    +LTERE   L     GY+ + IA +  +S +TVN ++ +
Sbjct: 130 IAARVLRHFSA--ESEAKKDYHLTEREKQILGFLVKGYSYKLIAAECTISYNTVNNHIRN 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   +  +A++ AI+   +
Sbjct: 188 IYDKLYVNSATEAVSLAIKERLV 210


>gi|171060520|ref|YP_001792869.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170777965|gb|ACB36104.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 224

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 49/164 (29%), Gaps = 10/164 (6%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNG 130
             +    +    +       S   L  +L+        +   +           G    G
Sbjct: 59  CQARRTAVDLLILDLSMPGRSGLDLLRQLQRDRPALKVLMVSMHDSAALVGQCLGAGACG 118

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGY 189
           +V  +S+   L   V     G               R       LT RE   LQL   G 
Sbjct: 119 FVAKSSDPQALIGAVRQALRGEVVDTHGPSAPPRAGRRPLPHEQLTGRELEVLQLLLAGL 178

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             E  A ++GLS  TV+ Y      KL   N I+ +  A + G 
Sbjct: 179 GVEVAAARIGLSEKTVSNYQTQIRQKLGVANSIELVHYARQHGL 222


>gi|126666054|ref|ZP_01737034.1| probable transcriptional regulator [Marinobacter sp. ELB17]
 gi|126629376|gb|EAZ99993.1| probable transcriptional regulator [Marinobacter sp. ELB17]
          Length = 257

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +LT R+   L+    G ++++IA  L ++  TV A++ +   KL   NR+QAI  A
Sbjct: 191 SLTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLSVHNRVQAILSA 246


>gi|304411512|ref|ZP_07393125.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307306712|ref|ZP_07586454.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304350039|gb|EFM14444.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306910680|gb|EFN41109.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 200

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             LTERE   L     G T+++I+E + LS+ T+  +      KL   N  + +
Sbjct: 137 DQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTIEVHRAKIMKKLKVNNMAELV 190


>gi|254787619|ref|YP_003075048.1| two-component regulator [Teredinibacter turnerae T7901]
 gi|237683412|gb|ACR10676.1| two-component regulator [Teredinibacter turnerae T7901]
          Length = 257

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           LT RE   + L  +G ++++I+  L + + TV  ++ +  +KL A NR  A 
Sbjct: 173 LTPRERQVIGLLAEGQSNKQISRTLCIELSTVKNHVHNLLIKLKAKNRAHAA 224


>gi|228999272|ref|ZP_04158852.1| Spore germination protein gerE [Bacillus mycoides Rock3-17]
 gi|228760469|gb|EEM09435.1| Spore germination protein gerE [Bacillus mycoides Rock3-17]
          Length = 52

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
                T++EIA +L +S  TV  ++ +A  KL    R QA+ + +R G
Sbjct: 1   MVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 48


>gi|209550642|ref|YP_002282559.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536398|gb|ACI56333.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 305

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164
            +R         GI   + +       +       +  +E +     A  +   + L   
Sbjct: 186 WMRERAAAG-RDGI---ISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEMLRQR 241

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
                   +LT+RE+  L     G  + +I E LGLS  TVN +L    VKL   NR  A
Sbjct: 242 F-------SLTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASA 294

Query: 225 IAKA 228
             KA
Sbjct: 295 AVKA 298


>gi|254291175|ref|ZP_04961971.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|150422869|gb|EDN14820.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
          Length = 267

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 27  SHLVAVLRCI--AHFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 84  ALQHNTRSGVYHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 144 PRSFPREQITALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRNWVEQAIQSFGAQRL 203

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIAE L ++  TV  +      +L   +  + 
Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAITHGTVKNHRKRIYAQLHVSSLSEL 253


>gi|126456846|ref|YP_001077162.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|126230614|gb|ABN94027.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
          Length = 215

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|331085012|ref|ZP_08334099.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408712|gb|EGG88177.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 208

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE S ++L  DG ++ EIAE L L   TV  YL S   KL+  +R Q      + 
Sbjct: 148 QLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRTQLAVFFYQH 206


>gi|329894627|ref|ZP_08270432.1| putative two-component response regulator protein [gamma
           proteobacterium IMCC3088]
 gi|328922883|gb|EGG30212.1| putative two-component response regulator protein [gamma
           proteobacterium IMCC3088]
          Length = 198

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LTERE + ++L  +G T+ +I E+L +++ TV  +   A  KL   N ++    A R
Sbjct: 138 QLTERERAVIRLVLEGLTNPQIGERLHIALRTVKVHRQHAMEKLGVSNLVELTRLAER 195


>gi|312887958|ref|ZP_07747542.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311299439|gb|EFQ76524.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 222

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A            +  ++ A ++T RE   L++     ++ EIA KL LSV TV  +  +
Sbjct: 136 ALQHYSDSKSRQHQYLNATATDITRREKEVLEMICKELSAAEIASKLYLSVRTVEGHRNN 195

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
             +K  A N    +  A++ G 
Sbjct: 196 LILKTGARNTAGLVIFAVKSGL 217


>gi|302528147|ref|ZP_07280489.1| predicted protein [Streptomyces sp. AA4]
 gi|302437042|gb|EFL08858.1| predicted protein [Streptomyces sp. AA4]
          Length = 240

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            + + R  ++  LT RET  L L   G T+ EIAE   +S  TV +++ +   KL A NR
Sbjct: 157 RIPRARRRSSDELTLRETQVLGLISIGLTNSEIAEAQSVSAETVRSHVKNVYRKLGARNR 216

Query: 222 IQAIAKAIRFGYI 234
             A+A       I
Sbjct: 217 AHAVALGHLENLI 229


>gi|238788409|ref|ZP_04632203.1| Response regulator uvrY [Yersinia frederiksenii ATCC 33641]
 gi|238723655|gb|EEQ15301.1| Response regulator uvrY [Yersinia frederiksenii ATCC 33641]
          Length = 206

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L     +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 121 MALGQLEPPTETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 180

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 181 ISGDVELTHLAIRHGL 196


>gi|237798778|ref|ZP_04587239.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021631|gb|EGI01688.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 208

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLV 208


>gi|229492601|ref|ZP_04386404.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
 gi|229320587|gb|EEN86405.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
          Length = 358

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                + L  +++    NLT RE   L     G ++ EI  +L  S  TV  ++     K
Sbjct: 278 AAGSLVTLRHEKAPR--NLTARELEVLTYLARGLSNAEIGRELHASHRTVATHVERILDK 335

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           LD  +R+ A   A   G +
Sbjct: 336 LDCHSRVAAAGIATAEGIV 354


>gi|229818835|ref|YP_002880361.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564748|gb|ACQ78599.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 220

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAA--------- 171
           L     G+++ T++   L + V   A        +V    L+   +  +           
Sbjct: 96  LRAGAAGFLLKTTDAPALLDAVRRVAAGEGALAPEVTRRVLDAVARGPAPGGSDDPAVPH 155

Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   L   G G ++  IA +L ++  T   ++     KL   +R+QA   A 
Sbjct: 156 GLAELTDRERDVLACLGRGLSNAGIARELVITEATAKTHVSRVLAKLGCSSRVQAALLAR 215

Query: 230 RFGYI 234
             G +
Sbjct: 216 EAGVV 220


>gi|192362451|ref|YP_001982262.1| GacA [Cellvibrio japonicus Ueda107]
 gi|190688616|gb|ACE86294.1| GacA [Cellvibrio japonicus Ueda107]
          Length = 217

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 126 FHKNGYVIFTSEFLMLA-------NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
               GYV   ++F  +           +  ++    Q+          + S    L++RE
Sbjct: 96  AGAVGYVTKGADFTEITDAINKVTRGDLYMSNSIAQQLALRTFSGANNQESPFEKLSQRE 155

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                L  +G    +IA    +S  TVN+Y      KLD  + ++    A++   +
Sbjct: 156 LQTAMLIANGQKVNDIANTFCVSPKTVNSYRYRIFEKLDINSDVELTLLAVKHNLL 211


>gi|221134627|ref|ZP_03560930.1| two component LuxR family transcriptional regulator [Glaciecola sp.
           HTCC2999]
          Length = 212

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + LT ++   ++    G  ++EIA +L ++  T+ A++ +   KL+  +R Q +  
Sbjct: 149 KELTPKQLLVIKCLKQGKKNKEIAGELCVTEATIKAHISAIFKKLNVTSRTQIVLL 204


>gi|29829271|ref|NP_823905.1| LuxR family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606378|dbj|BAC70440.1| putative LuxR-family transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 1004

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 15/168 (8%)

Query: 82  SGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
            G   + W      +    +     +          +       R        ++     
Sbjct: 832 QGPEGVAWLARAEAEWTRTVSGPDVVVWEKAVTAFAYGDPYERARCRRRLAQALLAAGRR 891

Query: 139 LMLANEVIIE---AHGACYQVITDFLELFKKRSSAARN---------LTERETSCLQLAG 186
              A +       A       + D +E   +R   A           LT RE   L+L  
Sbjct: 892 EEAAEQARAVRETATLLGAAPLLDAVETLVRRGRLAETSPAADGTAVLTARENDVLRLLA 951

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T+ +I E+L ++  T + ++ +   KL A +R +A+  A R G +
Sbjct: 952 RGRTNRQIGEELFITGKTASVHVSNILAKLSAASRTEAVVIAYREGLL 999


>gi|84625936|ref|YP_453308.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188579161|ref|YP_001916090.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84369876|dbj|BAE71034.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188523613|gb|ACD61558.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 222

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|78049832|ref|YP_366007.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78038262|emb|CAJ26007.1| two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 222

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|325277764|ref|ZP_08143325.1| response regulator receiver protein [Pseudomonas sp. TJI-51]
 gi|324097102|gb|EGB95387.1| response regulator receiver protein [Pseudomonas sp. TJI-51]
          Length = 210

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 4/135 (2%)

Query: 101 SGQLSVRLEGGLLPFAGIA-FPVRLGFHKNGYVIFTSE--FLMLANEVIIEAHGACYQVI 157
               +  L   ++  +G A  P+ +   K G   F  +     L  + +  A     +V 
Sbjct: 66  QAMHARGLALPVVFVSGHADVPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALERAGRVR 125

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L +   +   +LT RE         G ++ EIAE+LG+SV TV+ Y G    +L 
Sbjct: 126 QGDQALAQ-VQARIDSLTPRERDVFVPLAQGLSNREIAERLGISVKTVDLYRGRVMKRLQ 184

Query: 218 AVNRIQAIAKAIRFG 232
           A +  + +  AI  G
Sbjct: 185 AASLAELVGMAIACG 199


>gi|326774074|ref|ZP_08233356.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636213|gb|EGE37117.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS+A   LT+RE   ++   +G  + E A +L +S  TV  ++ +   KL   NR Q   
Sbjct: 158 RSTAFAALTDREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRTQVAV 217

Query: 227 KAIR 230
              R
Sbjct: 218 MYYR 221


>gi|296132086|ref|YP_003639333.1| transcriptional regulator, LuxR family [Thermincola sp. JR]
 gi|296030664|gb|ADG81432.1| transcriptional regulator, LuxR family [Thermincola potens JR]
          Length = 287

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 16/148 (10%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
              Q   RL       + IA P+R         +  S          +       + I +
Sbjct: 141 RGEQHYCRLFKDW---SCIAAPLRGPGGDIIGYLDVSMDSEEELGHTLALVQLAVKYIEE 197

Query: 160 FL-------------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
            +             ++        R L+ RE   ++L   G T  EIA+ + +S  TV 
Sbjct: 198 KMGEKQLSDESLKGADILLDNPFKLRILSIREREVIRLMAGGQTISEIAKAMRISQETVK 257

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            Y      KL    +   + KA     +
Sbjct: 258 TYCKRIYKKLGVNRKSDCLKKARELRLL 285


>gi|288918501|ref|ZP_06412852.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350141|gb|EFC84367.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 231

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTER 177
           +  G             L+ A   +          +T  +    +           LT++
Sbjct: 116 IMAGAAGYVLKQIRGNALVDAVRQVAAGQSLLDPAVTSRVLYRLREGPVEDERLSGLTDQ 175

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L L  +G T+ +IA ++ L+  TV  Y+ S   KL   +R QA   A + 
Sbjct: 176 ERRILSLIAEGLTNRQIAARMFLAEKTVKNYVSSMLAKLGMESRTQAAVFATKL 229


>gi|302533152|ref|ZP_07285494.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442047|gb|EFL13863.1| two-component system response regulator [Streptomyces sp. C]
          Length = 216

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAAR 172
           +   +R G             ++ A  ++ E     +      L         +      
Sbjct: 92  VYQALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNREARAVLERA 151

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE + L+L   G T+ EI+ +L +   TV +++ +   KL A +R QA+  A   G
Sbjct: 152 ALTEREEAVLRLMARGLTNVEISRELIVGTETVKSHVSAVLGKLGARDRTQAVIAAYESG 211

Query: 233 YI 234
           ++
Sbjct: 212 FV 213


>gi|237749020|ref|ZP_04579500.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
 gi|229380382|gb|EEO30473.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
          Length = 214

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L++RE     L   G +  +I  +L LSV TV+ +      K+   +  + +  A+
Sbjct: 145 PHTQLSDREFEVFNLLASGKSITDIGAQLHLSVKTVSTHKSRILTKMGMHSLAEIVQYAV 204

Query: 230 RFGYI 234
               +
Sbjct: 205 TQNLL 209


>gi|167719957|ref|ZP_02403193.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           DM98]
          Length = 70

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + + A R L+ RE   ++L   G T  +IA + G S+ TV+ +  +A  KL   + +   
Sbjct: 2   RGTDAPRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLF 61

Query: 226 AKAIRFGYI 234
             A   G +
Sbjct: 62  MYATENGLV 70


>gi|167579202|ref|ZP_02372076.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 215

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPATEIVRAIGAVLGGQTFFSEGIAARMIQASAEASPLDRLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIDGQAELIKFAVEH 212


>gi|156974186|ref|YP_001445093.1| hypothetical protein VIBHAR_01901 [Vibrio harveyi ATCC BAA-1116]
 gi|156525780|gb|ABU70866.1| hypothetical protein VIBHAR_01901 [Vibrio harveyi ATCC BAA-1116]
          Length = 261

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT---SEFLMLANEVII 147
            I ++  + +S  + +R+            P+     + G + FT   S+   L    I 
Sbjct: 102 QIFDKDKLANSDVVVLRMLSAQGACCHYTIPLVQFGQRWGGLSFTLFGSKGCGLTQSQIE 161

Query: 148 EAHGACY---------QVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           +     +         ++            K +     L+ R+   L L   G +++EIA
Sbjct: 162 QVTFISHMWLSFWQHSKLHRSLNRPDMKTDKENHRMLRLSHRQCDVLGLLAKGLSAKEIA 221

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +L LS  T+ ++       L+  +    +  A+R G 
Sbjct: 222 TELNLSPRTIESHKYRLLDMLELDSHADLVQFALRNGI 259


>gi|325067026|ref|ZP_08125699.1| LuxR family two component transcriptional regulator [Actinomyces
           oris K20]
          Length = 203

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 53/169 (31%), Gaps = 8/169 (4%)

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            GD+ L         +    +  +         +  +    LP   +             
Sbjct: 37  RGDEVLDAVREHT--VDVALVDIDMPGRDGLAATAEVVDSDLPCRCLIVTTFGRPGYLSR 94

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------RNLTERETSCLQLA 185
            +       +  +   EA     + +   L +     +          LTERE   L  A
Sbjct: 95  GMEAGAAGFIVKDTPPEALAEAIRKVHAGLRVIDPELAQESVLLGPNPLTEREKEVLLAA 154

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G  + EIA +L L   TV  YL SA  K  A NR +A   A   G++
Sbjct: 155 ATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203


>gi|312890670|ref|ZP_07750204.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311296836|gb|EFQ73971.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 305

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            NLT +ET    +   G    EIA+KL +S+ TV+ ++ +   K+   NR++   K
Sbjct: 246 HNLTRKETEISGMVCQGMIYREIADKLFISLRTVDKHIENIFDKVGVSNRVELARK 301


>gi|326774095|ref|ZP_08233377.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326636234|gb|EGE37138.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 237

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E A +L +SV TV  ++ +   KL   NR +    A+  
Sbjct: 175 DRLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVAR 234

Query: 232 GYI 234
             +
Sbjct: 235 RIV 237


>gi|297202079|ref|ZP_06919476.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148031|gb|EDY58315.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 280

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RE   + L   G T+++IA    +S  TV  ++     KL + +R +A AK
Sbjct: 213 QLSAREAEIMDLIASGMTNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAAK 267


>gi|325674463|ref|ZP_08154151.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325554723|gb|EGD24397.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 835

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H     V    L+    R+     LT  E   L     G    EIA +L +S++TV  + 
Sbjct: 754 HEFVVHVRAKLLDANAGRNP---GLTRTEKVVLGELATGRQLREIARELHVSLNTVRTHT 810

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KLD  +R +A+  A R G +
Sbjct: 811 RNLYRKLDVASRAEAVETATRRGLL 835


>gi|189463679|ref|ZP_03012464.1| hypothetical protein BACINT_00010 [Bacteroides intestinalis DSM
           17393]
 gi|189438629|gb|EDV07614.1| hypothetical protein BACINT_00010 [Bacteroides intestinalis DSM
           17393]
          Length = 217

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-----VITDFLELFKKRSSAARNLTERETS 180
              N  ++ +S    L   +     G  +       I+  L             T RE  
Sbjct: 101 CGVNAVILKSSASAELMTAIRCVLRGEAHACPRFAAISQKLNSASAGLQPKDAPTRRERD 160

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+    G  + EIA+ L +S +TV  +      K  A N I  + KA+  G+I
Sbjct: 161 VLEAVAKGMNTHEIADLLKISENTVETFRKRLISKFGAKNAIDMVVKAVAQGWI 214


>gi|118589374|ref|ZP_01546780.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118438074|gb|EAV44709.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 205

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A  LT RE   L+   DG +++E    LG+S  TV  +      KL A N    +  
Sbjct: 141 ADLLTRRELEVLKEITDGASNKEAGRTLGISPRTVEVHRARIMEKLGARNAADLVRI 197


>gi|119717886|ref|YP_924851.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119538547|gb|ABL83164.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 215

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 11/125 (8%)

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
              L   A I+  +           F +  L   ++  ++                +++ 
Sbjct: 89  ALDLGAVASISVGLHAEELVAAIEAFAAGHLQDGSQADLDNQAD-----------RRRQL 137

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
               NLT RE   L L   G ++EE+A +L LS++TV + + S   KL+  +R QA+A  
Sbjct: 138 GRDVNLTPREQDVLGLIVAGCSNEELAAELYLSINTVKSLIRSVYRKLEVTSRAQAVAWG 197

Query: 229 IRFGY 233
           +  G+
Sbjct: 198 VDHGF 202


>gi|309812510|ref|ZP_07706262.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
 gi|308433529|gb|EFP57409.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
          Length = 198

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 140 MLANEVIIEAHGACYQ-----VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                 ++EA     +            L  + SS A  LT RE   L     G T++EI
Sbjct: 110 DAPPADLVEAVHRASRGETVLAPAVAARLVNRLSSPAPTLTARELDVLDAVAGGATNKEI 169

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A+ L +S  TV  +L     KL A +R +
Sbjct: 170 AKHLFVSEATVKTHLVHINEKLGATSRTE 198


>gi|298251689|ref|ZP_06975492.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546281|gb|EFH80149.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 4/100 (4%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEI 194
              A   +++      +++    +     S+A  N    LT RE   L     G   +E+
Sbjct: 119 ESAARGDMLQQPELMKRILDHATQKRSAPSAAHENSDFHLTAREREVLAGIASGERGKEV 178

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +LG++  TV +YL S   KL+  +R  A+A AI  G +
Sbjct: 179 GARLGITRRTVESYLNSIYTKLNVDSRAAAVAIAIEHGLL 218


>gi|291166834|gb|EFE28880.1| nitrate/nitrite response regulator protein [Filifactor alocis ATCC
           35896]
          Length = 221

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             LT+RE   L     GY++ +I E L +S  TV  ++ +   KL   NR++A
Sbjct: 142 ETLTKRELEVLFFLNQGYSNAKIGEALFVSEGTVKKHISNLLGKLGLENRMEA 194


>gi|190573768|ref|YP_001971613.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011690|emb|CAQ45309.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 1/112 (0%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCL 182
                 G      E L    +V          +  +  L   +   S   NL+ RE    
Sbjct: 98  GAAGYIGKGCDAQELLRAVRDVAAGRRYLGTSIAQNLALSTVEGNGSPFDNLSPRELEVA 157

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   G   E+IA +L LS  TVN +      K+   + I     A ++G +
Sbjct: 158 LLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLV 209


>gi|325068174|ref|ZP_08126847.1| Regulatory protein, LuxR:Response regulator receiver [Actinomyces
           oris K20]
          Length = 237

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E A +L +SV TV  ++ +   KL   NR +    A+  
Sbjct: 175 DRLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVAR 234

Query: 232 GYI 234
             +
Sbjct: 235 RIV 237


>gi|302529224|ref|ZP_07281566.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302438119|gb|EFL09935.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 213

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 27/64 (42%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT RE       G G ++ EIA  LGLS  TV  +LG    K +A NR Q      
Sbjct: 149 RLEPLTPREREVAVAVGQGSSNAEIARALGLSEATVKVHLGRIMAKTEAANRTQVAILVH 208

Query: 230 RFGY 233
             G 
Sbjct: 209 DAGL 212


>gi|224024514|ref|ZP_03642880.1| hypothetical protein BACCOPRO_01239 [Bacteroides coprophilus DSM
           18228]
 gi|224017736|gb|EEF75748.1| hypothetical protein BACCOPRO_01239 [Bacteroides coprophilus DSM
           18228]
          Length = 262

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 8/170 (4%)

Query: 68  LIETYGDDFLFHFNSGLLPIIW-QSIQEETVIESSGQLSVRLEGGLLPFAGIA---FPVR 123
           L   + DD    +   L  + W   + E+   +      +R+      +       F V 
Sbjct: 96  LRLIHPDDLHEKYLQELRFLHWISRLPEKNRKDYYLSSRLRMRDDSGNYQPALHRMFYVP 155

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
             + +  ++       +L      E     + V      L   +  A   LTERE   L+
Sbjct: 156 APWDRGLWLALCLYNPLLT--EFPEGCVVVHAVTGQVRRLE--KCHAGSILTEREKQVLR 211

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L   G  S+ IAE+L +SV+TV+ +      KL   N I+A   A     
Sbjct: 212 LIDQGMMSKTIAEQLSISVNTVSRHRQEILKKLRVSNSIEACRVARELDL 261


>gi|223937686|ref|ZP_03629588.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893658|gb|EEF60117.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 454

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 17/201 (8%)

Query: 35  LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH--------FNSGLLP 86
           ++ +N    F   +  I             P++++       +               LP
Sbjct: 259 VFWLNRQPGFECNEIWISAEEALSRLEHRHPDMILVNRLQPGMRAMELVDKLKARFPQLP 318

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
           +         + E S Q+ +R+        G  F  R        ++   +   L ++ +
Sbjct: 319 VF-----TYGIYEDSDQIFIRV---SGVRTGYIFKRRTPGELLEPILGAFKHGALDSKEV 370

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                  +Q      E  +K + A  NLT+RE   L     GY  +EIA +LG+S+ TV+
Sbjct: 371 FTQIKNYFQSFFGG-ESSEKENLAMANLTDRELKVLNCVSKGYLDKEIAHELGISLWTVH 429

Query: 207 AYLGSATVKLDAVNRIQAIAK 227
            +L +   KL+   R +A  K
Sbjct: 430 NHLKNTYEKLNVHTRTEAALK 450


>gi|166367722|ref|YP_001659995.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
 gi|166090095|dbj|BAG04803.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
          Length = 223

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR-F 231
            LT+RE   L       ++  IA+ +G S  TV  +L     KL    R  A+  A+   
Sbjct: 152 GLTKREAEVLFWIAQDKSNAAIAKVIGCSEGTVRKHLEHIHGKLGVQTRTAAVIVALEKL 211

Query: 232 GYI 234
           G +
Sbjct: 212 GLL 214


>gi|126176053|ref|YP_001052202.1| response regulator receiver protein [Shewanella baltica OS155]
 gi|125999258|gb|ABN63333.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
          Length = 200

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             LTERE   L     G T+++I+E + LS+ T+  +      KL+  N  + +
Sbjct: 137 DQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTIEVHRAKIMKKLEVNNMAELV 190


>gi|325521630|gb|EGD00405.1| LuxR superfamily regulatory protein [Burkholderia sp. TJI49]
          Length = 208

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 49/196 (25%), Gaps = 19/196 (9%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSV 106
           +    EL                   D        +G   ++  S +       +     
Sbjct: 9   EPADFELFGMPEAMHRTYVA-RYRMLDPLHPSRCAAGERAVVTLSSELPDERRDASAYWT 67

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN---------------EVIIEAHG 151
           R          +   +R      G           A                + +     
Sbjct: 68  RFLRRHDVADVVEIWLRDAGRTVGAFSLLRFDGGAAARGGDGASARFAPGEIDALARLQP 127

Query: 152 ACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                +   L   +   R      LT RE    +L  DG +++EIA  L L   T+  +L
Sbjct: 128 VAEAALGPLLRARRGIHRIDCEARLTYREEQIARLVRDGRSNKEIARDLALGQPTIKTHL 187

Query: 210 GSATVKLDAVNRIQAI 225
                KL   NR + +
Sbjct: 188 MRMYRKLGVSNRTELV 203


>gi|325676388|ref|ZP_08156067.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325552949|gb|EGD22632.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 770

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             Y +    L++ +  + +  NLT RE    +L  +G T+  IAE+L ++  TV  ++  
Sbjct: 686 IAYALGEQPLDVAEPAADSGHNLTRREMQVAELVAEGMTNRAIAERLVIAPRTVEGHVDH 745

Query: 212 ATVKLDAVNRIQAIAK--AIRFG 232
              KL   +R Q  A   A R G
Sbjct: 746 ILAKLGFTSRTQVAAWMVAQRGG 768


>gi|261210041|ref|ZP_05924339.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|260840806|gb|EEX67348.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
          Length = 265

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 53/230 (23%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
            RL  +   I   +F    I           L   L                   D F  
Sbjct: 25  SRLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   ++  V     +
Sbjct: 82  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERSIVVYLGCFK 141

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 142 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 201

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIA+ L +S  TV  +      +L   +  + 
Sbjct: 202 SPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYAQLHVSSLSEL 251


>gi|271964741|ref|YP_003338937.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507916|gb|ACZ86194.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 1/132 (0%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HGACYQVITDFLE 162
             +         AG +  +         +            V          +     + 
Sbjct: 85  FDLDEYAFAGLKAGASGFLPKNTRPEELLAAIRSVAAGDAAVSPRITRRLLEKFAPQLMP 144

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              +R      LT RE   L     G ++ E+A  + L+  TV  +     +KL   +R 
Sbjct: 145 GAPERDERLALLTSREHEVLVQVARGLSNAEVATAMHLAEATVKTHFSRVLLKLGLRDRA 204

Query: 223 QAIAKAIRFGYI 234
           Q +  A   G I
Sbjct: 205 QVVVFAYESGLI 216


>gi|167840961|ref|ZP_02467645.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|325661231|ref|ZP_08149858.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472738|gb|EGC75949.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 208

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT RE S ++L  DG ++ EIAE L L   TV  YL S   KL+  +R Q      + 
Sbjct: 148 QLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRTQLAVFFYQH 206


>gi|320008532|gb|ADW03382.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 221

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 8/106 (7%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAG 186
             + +     V          V    +E F   S A           LT RE   L   G
Sbjct: 111 AGDLIAAVRTVARGEGLIAPAVTRRLIEEFASASPAHEPAAPEALGTLTRREREVLGCLG 170

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            G ++ EIA +L ++  TV  ++     KL   +R QA   A + G
Sbjct: 171 LGLSNMEIAGRLSMAEATVKTHVSRLLGKLGLRSRAQAAVLAQQLG 216


>gi|121606967|ref|YP_984296.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595936|gb|ABM39375.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 246

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ RE   LQL   G+T++EIA  L +S HTV  Y+     KL   ++ +AI +A
Sbjct: 179 PEQAMLSSREMEVLQLITRGFTADEIARLLQVSSHTVQTYVRRIYSKLKVRSKAEAIYEA 238

Query: 229 IRFGYI 234
            + G +
Sbjct: 239 RQQGIL 244


>gi|330967898|gb|EGH68158.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 202 AALLLQQL 209


>gi|330959238|gb|EGH59498.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 142 AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 201

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 202 AALLLQQL 209


>gi|330860550|emb|CBX70850.1| response regulator uvrY [Yersinia enterocolitica W22703]
          Length = 218

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           +L     +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    
Sbjct: 137 QLEPPTETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGD 196

Query: 222 IQAIAKAIRFGY 233
           ++    AIR G 
Sbjct: 197 VELTHLAIRHGL 208


>gi|327483317|gb|AEA77724.1| transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 265

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 25  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTLRELLFQRYLTHAYLD-DPFYS 81

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 82  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 141

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 142 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 201

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIAE L +S  TV  +      +L   +  + 
Sbjct: 202 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 251


>gi|160873591|ref|YP_001552907.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160859113|gb|ABX47647.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315265819|gb|ADT92672.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 200

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               A  +   +    F+++S       LTERE   L     G T+++I+E + LS+ T+
Sbjct: 111 ALVQAIEKAQRESQAAFEQQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170

Query: 206 NAYLGSATVKLDAVNRIQAI 225
             +      KL+  N  + +
Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190


>gi|90421195|ref|ZP_01229096.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334572|gb|EAS48355.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 299

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 46/141 (32%), Gaps = 14/141 (9%)

Query: 99  ESSGQLSVRLEGGLLPFAGIAFPV-------RLGFHKNG-YVIFTSEFLMLANEVIIEAH 150
               +  +         AG+   +       R      G  + F         E ++   
Sbjct: 160 TPWARRHILEAAEGPIAAGVLKTILASLRQGRASATDTGTGLSFAFLGEAGDGEFLLRVS 219

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                             +A   ++ RE   L     G ++++IA+ L LSV TVN +L 
Sbjct: 220 QVASDATLIA------SLNAKLPISPREAEVLLWLSRGKSNQDIADILKLSVRTVNKHLE 273

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           +   KL   NR  A A A+  
Sbjct: 274 TIFRKLGVENRSAATAIAMEQ 294


>gi|90415949|ref|ZP_01223882.1| regulatory protein, LuxR:Response regulator receiver [marine gamma
           proteobacterium HTCC2207]
 gi|90332323|gb|EAS47520.1| regulatory protein, LuxR:Response regulator receiver [marine gamma
           proteobacterium HTCC2207]
          Length = 214

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L++RE         G  +++IAEKL +S  TV  +      K+      + I  A + 
Sbjct: 151 ESLSDREYQIFLELASGKRAKDIAEKLQVSAKTVATHRSRLMQKMGFSTNAELILYANKS 210

Query: 232 GYI 234
           G +
Sbjct: 211 GLL 213


>gi|325570815|ref|ZP_08146498.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156325|gb|EGC68507.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 207

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + +ERE + ++    G  ++EIA+ L LS  TV  Y+     KL   +R Q      + 
Sbjct: 147 SFSEREFAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLGLRDRTQLAIYFYQH 205


>gi|298251437|ref|ZP_06975240.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297546029|gb|EFH79897.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1003

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 31/66 (46%)

Query: 168  SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            S+ A +LT RE   L+L   G+    IA++L LS  TVN +L S   KL    R  A   
Sbjct: 937  SANAFHLTARECEVLRLLALGHPDARIAQELVLSRRTVNTHLRSIYAKLGVSTRTAAARV 996

Query: 228  AIRFGY 233
            A     
Sbjct: 997  AFEQQL 1002


>gi|256379005|ref|YP_003102665.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923308|gb|ACU38819.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 36/87 (41%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A        +             R L+ER+   L   G G ++ +IA +L LS  TV +
Sbjct: 128 AATARLVAASSAGRRRDADARVRLRALSERDLEVLTRLGRGLSNADIARELFLSEATVKS 187

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y+    VK+D  NR QA   A   G +
Sbjct: 188 YVSRMLVKIDCRNRTQAGVLAHEAGLV 214


>gi|226365866|ref|YP_002783649.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244356|dbj|BAH54704.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 211

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 151 GACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +++   L      +RSS +  LT RE   L L G+G  ++EIA +L + V TV  +
Sbjct: 128 ALLRRLVDRALDTAPSDERSSTSVALTGREREVLTLVGEGLGNQEIAARLHIGVTTVKTH 187

Query: 209 LGSATVKLDAVNRIQAIAKAI 229
           + +   K    NR++    A 
Sbjct: 188 VANLMEKTGCDNRVRLAVFAH 208


>gi|111017070|ref|YP_700042.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816600|gb|ABG91884.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G  +  +   + A   +++   A   ++        ++     +LT +E + L L G+G
Sbjct: 107 RGMELTRAVHDVGAGRSLLD-SRAAAALMVKVRANAGEKDGIFGHLTNQERTLLALLGEG 165

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            T+ +IA ++ L+  TV  Y+     KL    R QA   A + 
Sbjct: 166 LTNRQIAARMFLAEKTVKNYVSRLLTKLGVERRTQAAVLATKM 208


>gi|254234497|ref|ZP_04927820.1| hypothetical protein PACG_00356 [Pseudomonas aeruginosa C3719]
 gi|126166428|gb|EAZ51939.1| hypothetical protein PACG_00356 [Pseudomonas aeruginosa C3719]
          Length = 210

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146
           +       +  ++   L         I   +       G V+           +A E + 
Sbjct: 55  LDLRFPGLTRIEMLADLRRQFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114

Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                    +V+  +     L  + S     LTER+   L+L   G +++EI   L +S 
Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISH 174

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227
           +TV  ++ S    LD  +R  A  K
Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|107028681|ref|YP_625776.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|105897845|gb|ABF80803.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
          Length = 212

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++      LT R
Sbjct: 97  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVTDLLRLAL 207


>gi|258626430|ref|ZP_05721277.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|258581482|gb|EEW06384.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
          Length = 214

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTEISEQLSLSPKTVNSYRYRLFAKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGIL 209


>gi|221067196|ref|ZP_03543301.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|264678380|ref|YP_003278287.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|299532225|ref|ZP_07045619.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|220712219|gb|EED67587.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|262208893|gb|ACY32991.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|298719887|gb|EFI60850.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 217

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 148 EAHGACYQVITDFLEL------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           E  G   +++    E          R +    LT RE   L+    G  +++IA+ LG+S
Sbjct: 114 ELLGLVERMLDHAREAFTGHQQAASRDALLAKLTGREAQVLERIVAGRLNKQIADDLGIS 173

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           + TV A+  +   KL+A      +  A+  G
Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIALGQG 204


>gi|171057984|ref|YP_001790333.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775429|gb|ACB33568.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 273

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFP---VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156
           S G     +  GL      + P   V  G    G +   +       + +          
Sbjct: 121 SGGIYVPPMARGLGGPNLPSVPDAQVFPGLPAQGPLSIAAAGPRDRPDGVHAGMSIGP-W 179

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
            +  + L +  S  A  LT R+   L L  +G  ++ IA++LGLSV TV  ++ +    L
Sbjct: 180 SSRGMALPRPASLDALGLTPRQAKVLMLLMEGKANKVIAKELGLSVETVKDHVAAVLRCL 239

Query: 217 DAVNRIQAIAKAIRF 231
              +R+QA+  A+R 
Sbjct: 240 GVRSRMQAV-IAVRH 253


>gi|171056933|ref|YP_001789282.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170774378|gb|ACB32517.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 211

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSE 192
             E L+ A   +          I   L L +     S    L+ERE         G    
Sbjct: 108 APEALVEAVRRVAAGQRYIDPAIAQKLALAQLGDEPSPVDALSEREFEVFVQLARGAGVA 167

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +IA +L LS  TV  +L +   KL A N+ +    A+R+G I
Sbjct: 168 DIAAQLKLSASTVGTHLYNVKQKLGASNQAELTLLALRWGLI 209


>gi|170720305|ref|YP_001747993.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169758308|gb|ACA71624.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 208

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G +++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSAREMMVLQQLARGRSNKEIADSMFLSNKTVSTYKTRLLLKLNAHSLVDLIELARRH 205

Query: 232 GY 233
           G 
Sbjct: 206 GL 207


>gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281489|gb|ABR89899.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 214

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              ++I    +           LT RE     +  +G++  +IA+ L LS  T++ +  +
Sbjct: 129 ISAKLIKQLHKPETDL--PHTKLTAREFQIFSMLVEGHSVNDIAKILSLSNKTISTHKAA 186

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              K++A      +  A++ G I
Sbjct: 187 VLQKMEASTTASLVYYALKHGLI 209


>gi|330984843|gb|EGH82946.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 208

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLV 208


>gi|323965034|gb|EGB60495.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323975971|gb|EGB71064.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|327254883|gb|EGE66499.1| response regulator [Escherichia coli STEC_7v]
          Length = 210

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S A  L+ RE + L+    G +++EIA+KL LS  T++A+  +   KL   + ++ I  
Sbjct: 144 NSTATVLSNREVTILRYLVSGLSNKEIADKLLLSNKTISAHKSNIYGKLGLHSIVELIDY 203

Query: 228 AIRFGYI 234
           A  +  I
Sbjct: 204 AKLYELI 210


>gi|299134343|ref|ZP_07027536.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
 gi|298591090|gb|EFI51292.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
          Length = 205

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +    +S   +L+ RE   L+    G +++ IA    +S  T+  Y  +   K+ A + 
Sbjct: 131 AVAADIASRIASLSPRERQVLEGLIAGLSNKLIARDYDISPRTIEVYRANVMTKMQASSV 190

Query: 222 IQAIAKAIRFGYI 234
            + +  AIR G +
Sbjct: 191 SELVRFAIRGGLL 203


>gi|298245139|ref|ZP_06968945.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552620|gb|EFH86485.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 337

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            K     R LT RE   L L   G  + EIA++L ++  TV+ ++ +   KL A NR +A
Sbjct: 212 DKPRRRPRPLTGREREILDLMRLGRKNREIAKELCIAESTVHKHVQNIFEKLRARNRTEA 271

Query: 225 I 225
           I
Sbjct: 272 I 272


>gi|239929732|ref|ZP_04686685.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438058|ref|ZP_06577448.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340953|gb|EFE67909.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 221

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 35/74 (47%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L    +  +    L+ RE   L L G G ++ EIA +L L   TV AY+ +   +L   N
Sbjct: 146 LTREAEARARVAVLSPREREVLGLVGAGLSNPEIAARLHLVEGTVKAYVSAVLDRLGVRN 205

Query: 221 RIQAIAKAIRFGYI 234
           R+QA   A   G +
Sbjct: 206 RVQAAIVAHEAGLV 219


>gi|238061732|ref|ZP_04606441.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883543|gb|EEP72371.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 221

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLA 185
             G  +        A+   + A     +++  F ++   R        +T RE   L   
Sbjct: 109 DAGPELLVQAVRSAADGQALIAPSVTVRLLQAFADVPVGRPMTQPVVPVTAREEDVLIAV 168

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             G T+ EIA+ L +S+ TV  +L S   KL   NR++    A  
Sbjct: 169 ARGLTNVEIADALHISLSTVKTHLASLMGKLGVRNRVEIAMWAYE 213


>gi|261404248|ref|YP_003240489.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261280711|gb|ACX62682.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 217

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAG 186
           +  S    +A + I+ A     ++      + +  S   R       LTERE    +L  
Sbjct: 113 MIASIRDTIAGQFILPA-PVAAKLAARMSRMSEGHSGMLRNRLDRIRLTEREEELARLMV 171

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            G  + EIA+ L ++  T   Y+ +   KL+ V+R QAI +
Sbjct: 172 QGLNNREIADMLHIAEGTARNYISNLYSKLEVVDRAQAIVR 212


>gi|119963006|ref|YP_946274.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119949865|gb|ABM08776.1| putative two-component system response regulator [Arthrobacter
           aurescens TC1]
          Length = 208

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                +P +              +   +L       A I F            +      
Sbjct: 44  AAQEHMPAVVLMDLAMGAGMDGIEAIKQLRQRNPKQAVIVFTTYDSDADIVRAVDAGAMG 103

Query: 140 ----MLANEVIIEAHGACYQ---VITD--FLELFKKRSSAARNLTERETSCLQLAGDGYT 190
                 A E I  A     Q   V++      LF++  +    LT RE   L L  +G +
Sbjct: 104 YLLKDAAPEEIFAAVRGAVQGKSVMSAPVASRLFQQLRNPDEILTPREAELLSLLTEGLS 163

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + ++ ++L +S  TV  +L     KL  
Sbjct: 164 NRDLGKRLFISEATVKTHLAHIYAKLGV 191


>gi|148265357|ref|YP_001232063.1| putative GAF sensor protein [Geobacter uraniireducens Rf4]
 gi|146398857|gb|ABQ27490.1| putative GAF sensor protein [Geobacter uraniireducens Rf4]
          Length = 337

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153
           +   +   G    R+    +  A   F  RLG ++   V            +I+      
Sbjct: 204 DAAKLALKGMPMERIPEPGIGSAPAFFKSRLGTYRVRTVPLGRNRR---GRLILLERYPA 260

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              +   L+ F         L+ RE     L   GY++ EIA+ L +S  TV  +L    
Sbjct: 261 EHRLHPKLDAF--------KLSRREKEIAVLVIQGYSNREIADLLFISEQTVKDHLHVMF 312

Query: 214 VKLDAVNRIQAIAK--AIRFGYI 234
            K     R +  AK   +R G I
Sbjct: 313 EKAGIRRRGELAAKVLGLRSGII 335


>gi|318060483|ref|ZP_07979206.1| regulatory protein LuxR [Streptomyces sp. SA3_actG]
 gi|318076515|ref|ZP_07983847.1| regulatory protein LuxR [Streptomyces sp. SA3_actF]
          Length = 223

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-----------HGACYQVITDFLELFKKRSSAAR 172
           L    +G+++  S +  L   V   A                  ++   +   +  +   
Sbjct: 103 LAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRIIEGHLSGRRQPSDQELARLG 162

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           +LTERE   L+L  DG ++ EIAE+L +S+HTV  ++    +K    +R QA   A 
Sbjct: 163 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 219


>gi|239929196|ref|ZP_04686149.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 291

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 166 KRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            R +A       L+ RE   + L   G  +++IA    +S  TV  ++     KL + +R
Sbjct: 213 GRPAAPDRSRFQLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSR 272

Query: 222 IQAIAK 227
            +A AK
Sbjct: 273 SEAAAK 278


>gi|226947735|ref|YP_002802826.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226840805|gb|ACO83471.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 210

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              + RE   ++   +G +++EI+ KL +S  TV  Y+ S   K    +R Q    
Sbjct: 146 DMFSRREIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIY 201


>gi|187777587|ref|ZP_02994060.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC
           15579]
 gi|187774515|gb|EDU38317.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC
           15579]
          Length = 218

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              + RE   ++   +G +++EI+ KL +S  TV  Y+ S   K    +R Q    
Sbjct: 154 DMFSRREIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIY 209


>gi|150375944|ref|YP_001312540.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150030491|gb|ABR62607.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 12/146 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAF-------PVRLGFHKNGYVIFTSEFLMLANE 144
           I +  + +S G               I F       P  +   K G V F ++   +   
Sbjct: 54  ILDLGLPDSDGFHVQEALAAAGGSQSIVFLTGKGDIPASVRAMKAGAVDFLTK--PVEAA 111

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
            ++EA     Q      E  +K+++ A     LT RET  + L   G  +++IA  LG  
Sbjct: 112 ALLEAVDVALQRARSRRETEEKKANVAMRIDRLTARETQVMHLVVSGLLNKQIAADLGTV 171

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAK 227
             T+  + G    KL        +  
Sbjct: 172 EKTIKVHRGRMMSKLGVRTVADLVRL 197


>gi|28871293|ref|NP_793912.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|66047117|ref|YP_236958.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|213970871|ref|ZP_03398994.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|257486630|ref|ZP_05640671.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289650462|ref|ZP_06481805.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|289676759|ref|ZP_06497649.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
 gi|298488740|ref|ZP_07006769.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302059914|ref|ZP_07251455.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           K40]
 gi|302130513|ref|ZP_07256503.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|302184715|ref|ZP_07261388.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|28854543|gb|AAO57607.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|63257824|gb|AAY38920.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
 gi|213924394|gb|EEB57966.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|298156813|gb|EFH97904.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330877330|gb|EGH11479.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330889570|gb|EGH22231.1| LuxR response regulator receiver [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330898580|gb|EGH29999.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330937554|gb|EGH41495.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330949995|gb|EGH50255.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
 gi|330966557|gb|EGH66817.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|330973098|gb|EGH73164.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330981561|gb|EGH79664.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
 gi|331015675|gb|EGH95731.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 208

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLV 208


>gi|21225571|ref|NP_631350.1| LuxR family transcriptional regulator [Streptomyces coelicolor
           A3(2)]
 gi|8347028|emb|CAB93733.1| putative LuxR-family regulator [Streptomyces coelicolor A3(2)]
          Length = 988

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           V    L    +  + A  LT RE   L+L   G+++  I E+L +S  T + ++ +   K
Sbjct: 902 VRRGRLAGPARAGAGAAVLTAREQDVLRLLALGHSNRRIGEELFISAKTASVHVSNILAK 961

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L+A +R +A+A A R G +
Sbjct: 962 LNAASRTEAVAVAHRQGLV 980


>gi|15597782|ref|NP_251276.1| response regulator GacA [Pseudomonas aeruginosa PAO1]
 gi|116050573|ref|YP_790608.1| response regulator GacA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152986307|ref|YP_001347976.1| response regulator GacA [Pseudomonas aeruginosa PA7]
 gi|218891334|ref|YP_002440201.1| response regulator GacA [Pseudomonas aeruginosa LESB58]
 gi|254235572|ref|ZP_04928895.1| response regulator GacA [Pseudomonas aeruginosa C3719]
 gi|254241019|ref|ZP_04934341.1| response regulator GacA [Pseudomonas aeruginosa 2192]
 gi|296388946|ref|ZP_06878421.1| response regulator GacA [Pseudomonas aeruginosa PAb1]
 gi|313107619|ref|ZP_07793804.1| response regulator GacA [Pseudomonas aeruginosa 39016]
 gi|2851490|sp|Q51373|GACA_PSEAE RecName: Full=Response regulator gacA; AltName: Full=Global
           activator
 gi|9948649|gb|AAG05974.1|AE004687_3 response regulator GacA [Pseudomonas aeruginosa PAO1]
 gi|2105387|gb|AAC45328.1| response regulator GacA [Pseudomonas aeruginosa PAO1]
 gi|115585794|gb|ABJ11809.1| response regulator GacA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167503|gb|EAZ53014.1| response regulator GacA [Pseudomonas aeruginosa C3719]
 gi|126194397|gb|EAZ58460.1| response regulator GacA [Pseudomonas aeruginosa 2192]
 gi|150961465|gb|ABR83490.1| response regulator GacA [Pseudomonas aeruginosa PA7]
 gi|218771560|emb|CAW27328.1| response regulator GacA [Pseudomonas aeruginosa LESB58]
 gi|310880306|gb|EFQ38900.1| response regulator GacA [Pseudomonas aeruginosa 39016]
          Length = 214

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172
           FP RL      GY+   +  E ++ A   +          I   L L     ++  S   
Sbjct: 89  FPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFD 148

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ERE     +  + +  + I++KL LS  TVN Y      KL   + ++    A+R G
Sbjct: 149 SLSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHG 208

Query: 233 YI 234
            +
Sbjct: 209 MV 210


>gi|312890682|ref|ZP_07750216.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311296848|gb|EFQ73983.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 305

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            NLT +ET    +   G    +IA+KL +S  TV+ ++ +   K+   NR++   K
Sbjct: 246 HNLTRKETEISGMVCQGMIYRDIADKLFISPRTVDKHIENIFEKVGVTNRVELARK 301


>gi|289642055|ref|ZP_06474208.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508128|gb|EFD29074.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 259

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT+R+   L+L  DG ++ EIA +L ++  TV ++L +   +LD  +R Q    A R
Sbjct: 193 LTQRQREVLELVADGLSNAEIAARLFVTEATVKSHLTAVLRRLDLRDRTQLAIYAHR 249


>gi|284046827|ref|YP_003397167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951048|gb|ADB53792.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             E+  ++      LT RE   L     G  + EIA  + LS  TV  +L S   KL   
Sbjct: 140 AAEVRSRQVEDRPLLTPRELEVLGHVAAGRGAPEIARLIHLSPATVKGHLQSLYEKLGVS 199

Query: 220 NRIQAIAKAIRFGYI 234
           +R  A+A+A+R G +
Sbjct: 200 DRAAAVAEAMRRGLL 214


>gi|71279078|ref|YP_270095.1| LuxR family DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71144818|gb|AAZ25291.1| DNA-binding response regulator, LuxR family [Colwellia
           psychrerythraea 34H]
          Length = 216

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +LT ++   L +  DG  +++IA +LG S  T+ ++     +KL   NR QA+ 
Sbjct: 149 SLTPKQHEILLMFADGLLNKQIASQLGTSESTIKSHASIIFLKLGVRNRTQAVI 202


>gi|114045833|ref|YP_736383.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113887275|gb|ABI41326.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 198

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L ++E   L+ A +G ++ EIAE L ++  TV  YL  A  KL+A NRI A   A + 
Sbjct: 136 DPLNDKERRALRFASEGKSTAEIAEMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQK 195

Query: 232 GYI 234
           G++
Sbjct: 196 GWL 198


>gi|320322629|gb|EFW78722.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 77

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            + +E+   + S A+NLT+RE   L+ + +G T+ +IA  L L   T++ ++ SA  K+ 
Sbjct: 1   MNTMEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60

Query: 218 AVNRIQAIAKAIRFG 232
             N+  A  +A   G
Sbjct: 61  VCNKTAAAVQAALSG 75


>gi|297191953|ref|ZP_06909351.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151144|gb|EFH30977.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 232

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                   +G              V   +E     +  I  A     ++    +    + 
Sbjct: 104 ERALGAGVSGFLLKSGDPRELIAGVRAAAEGAACLSPEI--ARRVLDRLGAGRMSRAAEA 161

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +A   LT RE   + L G G ++ EIA +L +   TV A++ +   +L+  NR+Q    
Sbjct: 162 RAALEPLTGREREVVALVGAGLSNAEIAARLFVVEGTVKAHVSAVLARLELRNRVQLAIL 221

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 222 AYEAGVV 228


>gi|262274271|ref|ZP_06052082.1| BarA-associated response regulator UvrY [Grimontia hollisae CIP
           101886]
 gi|262220834|gb|EEY72148.1| BarA-associated response regulator UvrY [Grimontia hollisae CIP
           101886]
          Length = 214

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +    + +  +NL+ERE   + +   G    +I+E+L LS  TVN+Y      KL 
Sbjct: 133 MALSQFSPAQENPFKNLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLG 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGML 209


>gi|192289923|ref|YP_001990528.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283672|gb|ACF00053.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 228

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTER 177
            P+ +   K G V F          ++     A  +      E  +  S      +LT R
Sbjct: 94  IPMTVRAMKAGAVNFL-PKPFDEATLLAGVREAVSRARQKRSEAERDHSLRMHYESLTSR 152

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           E   + L   G  +++IA +L LS  TV  + G+   K+ A +  + +  A   G
Sbjct: 153 EREVMGLVTAGLMNKQIAWQLSLSEITVKIHRGNMMRKMQAKSLAELVRMADALG 207


>gi|241663217|ref|YP_002981577.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|309782581|ref|ZP_07677304.1| transcriptional regulatory protein FixJ [Ralstonia sp. 5_7_47FAA]
 gi|240865244|gb|ACS62905.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
 gi|308918672|gb|EFP64346.1| transcriptional regulatory protein FixJ [Ralstonia sp. 5_7_47FAA]
          Length = 211

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176
            P+ +   K G V F           + E              + +++ +A      LT 
Sbjct: 97  VPLAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARSEDSVAREQKAAKDLLSRLTT 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           RE   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|145588917|ref|YP_001155514.1| response regulator receiver protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047323|gb|ABP33950.1| two component transcriptional regulator, LuxR family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            LT RE   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 153 KLTGRERQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 209


>gi|83717466|ref|YP_440522.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|167617321|ref|ZP_02385952.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257141183|ref|ZP_05589445.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|83651291|gb|ABC35355.1| DNA-binding response regulator, LuxR family [Burkholderia
           thailandensis E264]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPATEIVRAIGAVLGGQTFFSEGIAARMIQASAEASPLDRLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIDGQAELIKFAVEH 212


>gi|83943530|ref|ZP_00955989.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. EE-36]
 gi|83845762|gb|EAP83640.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. EE-36]
          Length = 213

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTE 176
            L    +GY++  +E  +L+ ++      +     +  + I +   L    +S    LTE
Sbjct: 92  SLSAGADGYLLKETEAAVLSRQLTQLSMGLPAISPSVARRIMEHFRLTGPVASLDGRLTE 151

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RET  L L   G  + E+A  L ++  TV  Y+     KL   +R +A   A R G 
Sbjct: 152 RETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANRLGL 208


>gi|116669782|ref|YP_830715.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609891|gb|ABK02615.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24]
          Length = 910

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLML--ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
           + L   ++  V+   +F      ++    A     +++     L     +    LTERE 
Sbjct: 800 LHLDAVESRCVVLALDFAREKGDSQSARAAQHRLDRLVETLPVLPLMPHTVGPELTERER 859

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
              ++A  G +++E+A +L LS+ TV  +L     K+   +R + 
Sbjct: 860 QVARMASQGLSNKEVANRLQLSIRTVEGHLYQIFTKMGISSRSEL 904


>gi|312138548|ref|YP_004005884.1| sensor kinase/luxr response regulator fusion [Rhodococcus equi
           103S]
 gi|311887887|emb|CBH47199.1| putative sensor kinase/LuxR response regulator fusion [Rhodococcus
           equi 103S]
          Length = 751

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             Y +    L++ +  + +  NLT RE    +L  +G T+  IAE+L ++  TV  ++  
Sbjct: 667 IAYALGEQPLDVAEPAADSGHNLTRREMQVAELVAEGMTNRAIAERLVIAPRTVEGHVDH 726

Query: 212 ATVKLDAVNRIQAIAK--AIRFG 232
              KL   +R Q  A   A R G
Sbjct: 727 ILAKLGFTSRTQVAAWMVAQRGG 749


>gi|255535468|ref|YP_003095839.1| Regulatory protein, LuxR:Response regulator receiver
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341664|gb|ACU07777.1| Regulatory protein, LuxR:Response regulator receiver
           [Flavobacteriaceae bacterium 3519-10]
          Length = 221

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
               +         +K  S  +  L+ERE   ++L   G+T+ EIA  L +S+ TV  + 
Sbjct: 133 HFSDEAAKALDSFREKIISYPSIKLSEREKQIVKLMFAGFTNTEIAAALFISISTVETHR 192

Query: 210 GSATVKLDAVN 220
            +   K +  +
Sbjct: 193 KNIYRKTETHS 203


>gi|171912872|ref|ZP_02928342.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 220

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 12/152 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           + +  +   +G              GI F    G           +   +   +      
Sbjct: 56  VLDLQMPGLNGFALQDELTARGSHEGIVF--ISGHGDVPACARALKKGAVDFLMKPFGDD 113

Query: 152 ACYQVITDFLELFKKRSSAA----------RNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
                + + L   ++    A            LT RE   L+    GY +++IA  LG S
Sbjct: 114 RLLASVEEALAYSERTLKQALSRQGVQELLATLTPREMEVLRGVIAGYLNKQIAADLGTS 173

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             T+  + G    KL+  +  + +      G 
Sbjct: 174 EKTIKVHRGRVMEKLEVHSVAELVRMCAMIGL 205


>gi|126442394|ref|YP_001064239.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 668]
 gi|126221885|gb|ABN85390.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 668]
          Length = 215

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++       + I   +      +S    LT R
Sbjct: 99  VTQAVRAGASGYLLKDSPATEIVRAIGAVLAGQTFFSEGIAARMIHASAEASPLDRLTPR 158

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KLD   + + I  A+  
Sbjct: 159 ERDILDALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|271963970|ref|YP_003338166.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507145|gb|ACZ85423.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 35/85 (41%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A     ++  D L            LT RE   L L G G ++ EIA +L L   +V  Y
Sbjct: 130 AARVIGELAGDRLARGSAARERIDVLTRREREVLGLVGAGLSNAEIARRLHLVEGSVKTY 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   +L   NR+QA   A   G 
Sbjct: 190 VSTILGRLGVRNRVQAAVLAHEAGL 214


>gi|212634641|ref|YP_002311166.1| nitrate/nitrite DNA-binding response regulator [Shewanella
           piezotolerans WP3]
 gi|212556125|gb|ACJ28579.1| Nitrate/nitrite DNA-binding response regulator, putative
           [Shewanella piezotolerans WP3]
          Length = 206

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           T+RE   L+L   G  ++ IA+++ +SV TV  +  +   KL   +    +  AI  G 
Sbjct: 146 TQREQLVLRLISLGMNNKRIAQEMDVSVRTVETHKRNIKQKLMIDSTAGLVRYAIDHGL 204


>gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806]
 gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 218

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+    G ++ EI +KL LS  T+  Y+ S   K    NR + +  ++   
Sbjct: 156 KLTNREREVLEHLARGLSNSEIGQKLHLSSRTIEKYVSSLLRKTTTNNRAELVRFSLEHR 215

Query: 233 YI 234
            I
Sbjct: 216 LI 217


>gi|15890276|ref|NP_355948.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158472|gb|AAK88733.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 492

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 88  IWQSIQEETVIESSGQLSVRLE--------GGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
           +W  +     IE   + ++ +                 I    R   +    VI+  + +
Sbjct: 317 LWDDVPARRDIEKRLKDNIPIRNEAMRMNLADDGTAECIVSAERAEINDQLCVIWAIQDV 376

Query: 140 MLANEVIIEAHGACYQVITDF-------------LELFKKRSSAARNL---TERETSCLQ 183
                   E   A   V+TD              L    + +S + +L   T+RE   L 
Sbjct: 377 TERRRSENELIEAIESVMTDTSWFSRTVVERLAGLRQNSRGASPSASLKDLTDREEQILS 436

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L  DG + +E++++L LS HT+  ++ S   K+    R  A+  A   G+
Sbjct: 437 LICDGSSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWARERGF 486


>gi|83954912|ref|ZP_00963590.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. NAS-14.1]
 gi|83840638|gb|EAP79810.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. NAS-14.1]
          Length = 213

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTE 176
            L    +GY++  +E  +L+ ++      +     +  + I +   L    +S    LTE
Sbjct: 92  SLSAGADGYLLKETEAAVLSRQLTQLSMGLPAISPSVARRIMEHFRLTGPVASLDGRLTE 151

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RET  L L   G  + E+A  L ++  TV  Y+     KL   +R +A   A R G 
Sbjct: 152 RETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANRLGL 208


>gi|319781056|ref|YP_004140532.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166944|gb|ADV10482.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 219

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   LQL   G  + +IAE+LG+S+ T   +  +   KL   N  +  A A+R G
Sbjct: 156 PLTRRERQILQLVAQGMITRDIAERLGISLPTARKHRENLMGKLSLHNTAELTAYAVRLG 215

Query: 233 Y 233
            
Sbjct: 216 L 216


>gi|300022440|ref|YP_003755051.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524261|gb|ADJ22730.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 218

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + ++    L++R+   + LA  G++++EIA  L +S  TV  Y      +  A N    +
Sbjct: 136 RLAARINELSDRQRQVMDLAVKGHSNKEIALALKISPRTVETYRAWVMERTGARNIADLV 195

Query: 226 AKAIRF 231
             A+R 
Sbjct: 196 RIAVRL 201


>gi|291302996|ref|YP_003514274.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572216|gb|ADD45181.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 213

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   ++    G T+ EIAE+L ++V TV ++L S   K++  NR +    A     
Sbjct: 152 LSERELDVVERVARGRTNNEIAEELFVAVSTVKSHLESVRAKINVRNRTEIAVWAWENKI 211

Query: 234 I 234
           +
Sbjct: 212 V 212


>gi|223984565|ref|ZP_03634695.1| hypothetical protein HOLDEFILI_01990 [Holdemania filiformis DSM
           12042]
 gi|223963470|gb|EEF67852.1| hypothetical protein HOLDEFILI_01990 [Holdemania filiformis DSM
           12042]
          Length = 67

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT RE     L    Y ++EI+E+L +S  TV  ++ +  +KL    R QA+ + IR
Sbjct: 5   LTRREKEVFDLLVSNYDTKEISEQLNISEKTVRNHISNVILKLAVKGRAQAVVELIR 61


>gi|127512474|ref|YP_001093671.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126637769|gb|ABO23412.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 219

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            + ++   +LT ++   LQ+  +G  +++IA  LG+S  T+ A+  +   KL   NR QA
Sbjct: 146 DQMAAKLADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 225 IA 226
           + 
Sbjct: 206 VI 207


>gi|312140063|ref|YP_004007399.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311889402|emb|CBH48718.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 863

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H     V    L+    R+     LT  E   L     G    EIA +L +S++TV  + 
Sbjct: 782 HEFVVHVRAKLLDANAGRNP---GLTRTEKVVLGELATGRQLREIARELHVSLNTVRTHT 838

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KLD  +R +A+  A R G +
Sbjct: 839 RNLYRKLDVASRAEAVETATRRGLL 863


>gi|303257977|ref|ZP_07343986.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|302859320|gb|EFL82402.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
          Length = 220

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +LT RE   ++L   G  ++ IA  L ++  TV  +   A  KL   N  + +
Sbjct: 159 DSLTPREKEVVRLVAQGKLNKVIAADLNITEKTVQQHRSVACHKLSVRNVAELV 212


>gi|297158406|gb|ADI08118.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 202

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT RE   L+L   G  + EIA ++ L+  TV  YL +   KL+A NR  A+  A 
Sbjct: 138 ADNPLTPREVEVLRLVAQGAEATEIAAQVHLTAGTVRNYLTAIVTKLNARNRTDAVRIAT 197

Query: 230 RFGYI 234
             G+I
Sbjct: 198 EAGWI 202


>gi|296161825|ref|ZP_06844627.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295887989|gb|EFG67805.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 216

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             S   ++L+ RE         G +   IAE L LS  TV+ +      K    N    +
Sbjct: 141 DTSLPHQSLSTRELEIFLRIASGDSVTVIAEHLNLSAKTVSTHKTRILEKTGLANDAALV 200

Query: 226 AKAIRFGYI 234
             A+R G +
Sbjct: 201 RYALRTGLL 209


>gi|289642054|ref|ZP_06474207.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508127|gb|EFD29073.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 221

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
                  ++   +I        V+  F +           LTERE   L L  DGY++  
Sbjct: 121 LARAVEAVSRGEVIFGAHVADGVLRHF-DAAGAEQPPFPELTERERVVLCLVADGYSTAA 179

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           IA +L L+  TV  YL     KL+  +R +A   A R G 
Sbjct: 180 IAGELALTTKTVRNYLSKIFAKLEVRDRAEAAVIARRAGL 219


>gi|315505622|ref|YP_004084509.1| transcriptional regulator, luxr family [Micromonospora sp. L5]
 gi|315412241|gb|ADU10358.1| transcriptional regulator, LuxR family [Micromonospora sp. L5]
          Length = 979

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
            +   P  +  +++   + +           L     +A  +       G V  T+E   
Sbjct: 830 RNHPYPAAYSRLRQAEALLARRSRVATAGKLLHRAYAMAQSL-------GAVPLTAEIRT 882

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEK 197
           +A+   +    A                 A   L   T RE   L    +G T+ EI ++
Sbjct: 883 IASRARVALDAAPDPAPVPRQRAAAPAGPAVDELATLTAREREVLAAVAEGLTNREIGQR 942

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           L +S  T+  ++     KL    R+QA A  +R G
Sbjct: 943 LFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNG 977


>gi|192359096|ref|YP_001981884.1| putative two-component response regulator [Cellvibrio japonicus
           Ueda107]
 gi|190685261|gb|ACE82939.1| putative two-component response regulator [Cellvibrio japonicus
           Ueda107]
          Length = 196

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 151 GACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                ++   +    ++ SA+      +LT RE    +    G T++E+A +L ++  TV
Sbjct: 108 WLGADLMRQLIRATARQLSASPLVDLSSLTCRERLVAEAVAAGKTNKEVARELEITERTV 167

Query: 206 NAYLGSATVKLDAVNRIQAIAK 227
            A++G+   KL   +R+Q +  
Sbjct: 168 KAHMGAIFEKLQVRDRLQLVLL 189


>gi|154486396|ref|ZP_02027803.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis
           L2-32]
 gi|154084259|gb|EDN83304.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis
           L2-32]
          Length = 221

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 15/179 (8%)

Query: 65  PNILIETYGDDFLFHFNSGL--LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA-FP 121
             +   T GD+ +         L ++   +  E +   +    +RL    LP  GI  F 
Sbjct: 41  YVVWTATSGDEAIERCQRNDDNLNLLVLDMSMEGLQGPAICHRIRLMDRHLPILGITSFS 100

Query: 122 V---RLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAA 171
           +   R    + G      +         IE         G     + +     ++ +S  
Sbjct: 101 INSYRSRLMEAGAQGLIGKEDSDQLAKAIERLCGGNVMEGFEPPALANVRIRREEETSP- 159

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             LT RE   + L  DG    EIAE+L +S +TV  ++     KL+     QA+A  +R
Sbjct: 160 -RLTVREEQIISLCADGMLDREIAERLDISENTVRKHMQGILKKLNCKTARQAVALWVR 217


>gi|152983037|ref|YP_001352599.1| two-component response regulator [Janthinobacterium sp. Marseille]
 gi|151283114|gb|ABR91524.1| two-component response regulator [Janthinobacterium sp. Marseille]
          Length = 209

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +   +   L+ RE    QL   G    EIA++L +S  TV+ +      K+   N  Q I
Sbjct: 140 RARPSHELLSTREYEIFQLLVHGRGVNEIADELSISNKTVSTHKTRLMEKMKCENVSQLI 199

Query: 226 AKAIRFGYI 234
             AI  G +
Sbjct: 200 RYAIAHGML 208


>gi|123442115|ref|YP_001006098.1| response regulator [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|332161393|ref|YP_004297970.1| response regulator [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|122089076|emb|CAL11901.1| response regulator protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318605328|emb|CBY26826.1| bara-associated response regulator UvrY (= GacA = SirA) [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665623|gb|ADZ42267.1| response regulator [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 218

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L     +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALGQLEPPTETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|120403052|ref|YP_952881.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1]
 gi|119955870|gb|ABM12875.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1]
          Length = 521

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
                 +       E  ++       V+       +  S     LT RE   L L   G 
Sbjct: 415 PATSAAARLRERVREGRLDEVAV-EAVLQAAGHRARGHSPRPGGLTPREIEVLCLVARGA 473

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +++EIA  LG+S  T   ++     K+ A NRI A   A+  G +
Sbjct: 474 SNKEIAATLGISGKTARNHVERTYAKIGATNRIGASMFALNHGLV 518


>gi|295704765|ref|YP_003597840.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802424|gb|ADF39490.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 212

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
             + ++  +     TERETS + L   G +++EI++ L +S  TV  Y+ S   K    +
Sbjct: 139 AAVERESKADMTQFTERETSIMTLIAKGLSNKEISKTLFISEGTVANYISSILSKTGLEH 198

Query: 221 RIQAIAK 227
           R Q    
Sbjct: 199 RTQIAIY 205


>gi|229588696|ref|YP_002870815.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360562|emb|CAY47419.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 210

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 148 ERLSGREMMVLQQLARGRTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRN 207

Query: 232 GYI 234
           G +
Sbjct: 208 GLV 210


>gi|21229587|ref|NP_635504.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766463|ref|YP_241225.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21111059|gb|AAM39428.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571795|gb|AAY47205.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 210

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                F+ + +      ERE + L+L   GY+++EIA  L L+  TV  Y+ +   KL  
Sbjct: 135 RARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILDKLGT 194

Query: 219 VNRIQAIAKAIRFGYI 234
            +R +A+ KAI    I
Sbjct: 195 RDRTRAVLKAITLRVI 210


>gi|21242362|ref|NP_641944.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107798|gb|AAM36480.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 237

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ 156
            L+ RL         I         ++  V        LA            Q       
Sbjct: 66  DLTRRLMQRSPNSRAICIAPSDACTQSSAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 125

Query: 157 -----ITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
                ++  L    +R++ A      LT RE   +QL  +G ++ +IA +L LSV TV  
Sbjct: 126 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 185

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGY 233
           +  +  +KL+  +  Q    AI  G 
Sbjct: 186 HRENCMLKLNIQSIAQLTRYAIAQGL 211


>gi|124268227|ref|YP_001022231.1| LuxR family DNA binding response regulator [Methylibium
           petroleiphilum PM1]
 gi|124261002|gb|ABM95996.1| DNA binding response regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 209

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 36/82 (43%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                   +      +S A  L+ERE S       G T  +IAE L LS  TV  +L   
Sbjct: 126 AQTAQRLAVAQIDGETSPADMLSEREFSVFIQLARGMTVAQIAETLKLSPSTVGTHLYHI 185

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL+A N+ +    A+R+G I
Sbjct: 186 KQKLNASNQSEITLVALRWGLI 207


>gi|258650544|ref|YP_003199700.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258553769|gb|ACV76711.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 947

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 5/155 (3%)

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              +   LP+  Q++       +  +L+    G           V    H    V   + 
Sbjct: 798 AAGSDSCLPVFDQAVGALADSPARLELARAEAGLGGALRRRGQAVAARPHLARAVELATA 857

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               +      A  A  ++        ++  +    LT  E   ++LA  G T++ IA++
Sbjct: 858 CGADS-----VAGPAAAELRVAGGRPRQRALTGIEALTPSERRAVELAAAGRTNKAIAQE 912

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           L ++  TV  +L SA  KL   +R +  A   R G
Sbjct: 913 LFVTPKTVEVHLSSAYRKLGVTSRGELAALWARVG 947


>gi|156975022|ref|YP_001445929.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|269959627|ref|ZP_06174007.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
 gi|156526616|gb|ABU71702.1| hypothetical protein VIBHAR_02748 [Vibrio harveyi ATCC BAA-1116]
 gi|269835550|gb|EEZ89629.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
          Length = 214

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  ++L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSPASENPFKDLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGML 209


>gi|217971684|ref|YP_002356435.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217496819|gb|ACK45012.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 200

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               A  +   +    F+++S       LTERE   L     G T+++I+E + LS+ T+
Sbjct: 111 ALVQAIEKAQRESQAAFEQQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTI 170

Query: 206 NAYLGSATVKLDAVNRIQAI 225
             +      KL+  N  + +
Sbjct: 171 EVHRAKIMKKLEVNNMAELV 190


>gi|163119694|ref|YP_081082.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|145903205|gb|AAU25444.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
          Length = 212

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           I+       ++ ++  E  +       +L TERE   + L   G +++EI+++L +S  T
Sbjct: 122 IVMQDIILDKIKSNLAEHKEAEPKIDESLFTERELGIMALIARGLSNKEISKELFISEGT 181

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           +  Y+ S   K    +R Q    
Sbjct: 182 IANYISSILGKTGLEHRTQIAIY 204


>gi|84394223|ref|ZP_00992951.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|86148831|ref|ZP_01067096.1| response regulator [Vibrio sp. MED222]
 gi|148982309|ref|ZP_01816707.1| response regulator [Vibrionales bacterium SWAT-3]
 gi|218709938|ref|YP_002417559.1| response regulator [Vibrio splendidus LGP32]
 gi|84375137|gb|EAP92056.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|85833382|gb|EAQ51575.1| response regulator [Vibrio sp. MED222]
 gi|145960543|gb|EDK25902.1| response regulator [Vibrionales bacterium SWAT-3]
 gi|218322957|emb|CAV19134.1| Similar to transcriptional regulator, LuxR family [Vibrio
           splendidus LGP32]
          Length = 214

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 ISGDVELTHLAIRHGML 209


>gi|307941454|ref|ZP_07656809.1| transcriptional regulatory protein FixJ [Roseibium sp. TrichSKD4]
 gi|307775062|gb|EFO34268.1| transcriptional regulatory protein FixJ [Roseibium sp. TrichSKD4]
          Length = 198

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A  LT RET  LQ   +G +++E   KLG+S  TV  +      KL A N    +  
Sbjct: 138 ADLLTRRETEVLQEITEGASNKEAGRKLGISPRTVEVHRARIMEKLGARNAADLVRI 194


>gi|319424538|gb|ADV52612.1| regulatory protein LuxR [Shewanella putrefaciens 200]
          Length = 248

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 17/240 (7%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +++   L   +  I   +K   F+ +                +  N    +         
Sbjct: 10  ANTASTLKEVIQAITAALKLHGFSGFWFQGVPHCAYENYHFPKETNLFSQASLRKP-NAS 68

Query: 71  TYGDDFLFHFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                 +       L  +          +++S     RL       A + F         
Sbjct: 69  VASSPVVAELQRFYLSQVAANDFNFGFSLDTSKSYMYRLSCDKGDKASLLFSKHHIQTVL 128

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---------------AARNL 174
            + +        A   I+ +H +   ++   L    K +                 +  L
Sbjct: 129 SWPVTCHSNRHWAGRFILLSHLSDSDILLTGLSATLKEAQNKLFECNKPLFNPFLQSSLL 188

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +     L +  +G  ++EI+ +L +S+  V  ++ S   K  A NR   I  A ++  I
Sbjct: 189 KDNARDILLMVANGLQNDEISTQLPISIRGVEYHMESMRRKFGATNRANLIHLAHQYELI 248


>gi|121591834|ref|ZP_01679014.1| transcriptional regulator, LuxR family protein [Vibrio cholerae
           2740-80]
 gi|121546302|gb|EAX56587.1| transcriptional regulator, LuxR family protein [Vibrio cholerae
           2740-80]
          Length = 158

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 77  MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 136

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 137 INGDVELTHLAIRHGIL 153


>gi|308371945|ref|ZP_07426771.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu004]
 gi|308373119|ref|ZP_07431080.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu005]
 gi|308334997|gb|EFP23848.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu004]
 gi|308338804|gb|EFP27655.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu005]
 gi|323720175|gb|EGB29278.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
          Length = 1124

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1055 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1114

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1115 LVQEAAQH 1122


>gi|269138681|ref|YP_003295382.1| two-component response regulator, hexose phosphate transport system
           regulatory protein [Edwardsiella tarda EIB202]
 gi|267984342|gb|ACY84171.1| two-component response regulator, hexose phosphate transport system
           regulatory protein [Edwardsiella tarda EIB202]
 gi|304558688|gb|ADM41352.1| Transcriptional regulatory protein UhpA [Edwardsiella tarda FL6-60]
          Length = 209

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 11/159 (6%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL------GFHKNGYVIFTSEFLM 140
           +    +      E+   L  RL      F  I   +             G   + ++   
Sbjct: 48  VSVAVLDIAMPDENGLSLLKRLRAKRPGFRAIILSIYDTPAFVKSALDAGASGYLTKRCG 107

Query: 141 LAN--EVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195
                + +       + +  D L   +    AA  L   T RE     L   G + + IA
Sbjct: 108 PEELVQAVRSVSMGGHYLCADALRALRGGEPAAEALKILTPREREIFALLVKGDSVKRIA 167

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L LS  TV+ +  +   KL   + I  +  A+    +
Sbjct: 168 FALDLSHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 206


>gi|326201001|ref|ZP_08190873.1| transcriptional regulator, LuxR family [Clostridium papyrosolvens
           DSM 2782]
 gi|325988569|gb|EGD49393.1| transcriptional regulator, LuxR family [Clostridium papyrosolvens
           DSM 2782]
          Length = 256

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNL 174
            + P+       G +   S  + L  E+II      YQV   +    +   KR  +    
Sbjct: 132 FSVPICFRNRIIGSIAVASTGIPLKKELIIITELLAYQVTNEVEVAGQGMAKRLVSQMKF 191

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +E++   L+L   G T + +A   G+S++TV  +      KLD  N I A+ KA+++  I
Sbjct: 192 SEKQLLVLKLLAKGMTEKAVAIDSGISINTVRYHKKIIFRKLDTGNVIDAVVKALKYNLI 251


>gi|206562092|ref|YP_002232855.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038132|emb|CAR54080.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 230

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L         A  L+ RE   ++L   G +  EIAEKL  S  T++    SA  KL
Sbjct: 137 MDRILRNTGSVGGKAPALSVREVEVIRLFASGLSVNEIAEKLNRSKKTISTQKSSAMQKL 196

Query: 217 DAVNRIQAIAKAIRFGYI 234
                +  +  AI  G +
Sbjct: 197 GIERDVDLVRYAIACGLV 214


>gi|188592229|ref|YP_001796827.1| response regulator receiver, luxr chey family [Cupriavidus
           taiwanensis LMG 19424]
 gi|170938603|emb|CAP63590.1| putative response regulator receiver, luxR cheY family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 219

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 106 VRLEGGLLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACY-- 154
           + L+  L    G+  P+    G+      +   +             + +++A  A    
Sbjct: 76  LDLQARLGQL-GVHIPIIFMTGYGDIAMTVAAMKAGAEDFMPKPFRDQDLLDAVAAALEK 134

Query: 155 -QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +   + L   +   +  R+LT RE   + LA  G  +++IA ++G+S  TV  + G A 
Sbjct: 135 DRGRREGLRQLEALHACYRSLTPREGEVMGLAVSGLLNKQIAAEIGISEVTVKIHRGQAM 194

Query: 214 VKLDAVNRIQAIAKAIRFGYIC 235
            K+ A    + +  A + G IC
Sbjct: 195 RKMKARTFAELVLMAQQLG-IC 215


>gi|170692899|ref|ZP_02884061.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170142555|gb|EDT10721.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 240

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S     L+ RE   L     G +++EIA  L +S  TV  ++     KL   +R+QA   
Sbjct: 169 SEPEPALSIREQEILTYIARGASNKEIARALAISETTVKIHVQHILRKLKLTSRVQAAVY 228

Query: 228 A 228
           A
Sbjct: 229 A 229


>gi|117617851|ref|YP_857301.1| DNA-binding transcriptional activator UhpA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559258|gb|ABK36206.1| transcriptional regulatory protein UhpA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 196

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 99  ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACY 154
                L +         A +   V          +       L+     + +I A     
Sbjct: 58  PDQSGLDLLKRLPSGL-AVVMLSVHDSPALIEQALQAGAKGFLSKRCSPDELIAAVRTAA 116

Query: 155 Q--VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K   ++   LT RE    QL   G   + IAE+LGLS  TV+ +  + 
Sbjct: 117 HGGCYLTPDIAHKLACNSQDPLTNREREVAQLLARGLEVKAIAEQLGLSPKTVHVHRANL 176

Query: 213 TVKLDAVNRIQAIAK 227
             KL   N ++   +
Sbjct: 177 MDKLKVSNNVELAHR 191


>gi|317507621|ref|ZP_07965334.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254098|gb|EFV13455.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 218

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  +  +   + + + +++        +   L    +  S    L+ +E + L L G+G 
Sbjct: 108 GMELVAAVRAVGSGKSLLD--NRAAAALMHRLRTKAQGHSPLDALSAQERTLLDLIGEGL 165

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T+ +IA ++ L+  TV  Y+     KLD   R QA   
Sbjct: 166 TNRQIAGRMFLAEKTVKNYVSRLLAKLDVERRTQAAVL 203


>gi|302551208|ref|ZP_07303550.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468826|gb|EFL31919.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 231

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A                + ++  R LT RE   L L  +G ++ +I  ++ L   TV  +
Sbjct: 136 ASRTLLHSHPGTEAAVDEEAARVRLLTPRERDVLVLVAEGLSNADIGARIHLGAGTVKDH 195

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL   +R+QA   A R G +
Sbjct: 196 VSAILTKLRVTSRVQAALLAQRAGLL 221


>gi|184200360|ref|YP_001854567.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183580590|dbj|BAG29061.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 203

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH------KNGYVI 133
             +G LP+    +  E    +  + + R+         +                 G   
Sbjct: 43  ALAGELPVDVALLDIEMPGLTGLEATERIVAAGRGTRCLMVTTFDRPGYLRRAFDAGASG 102

Query: 134 FTSEF-LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           F  +          I    A  +V+   L   K   +    LT RE   L+ A  G ++ 
Sbjct: 103 FVVKDTPAAELAEAIRKVHAGLRVVDPALA-EKSLLAGPNPLTPREQDVLREASHGASAG 161

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +I   L LS  TV  +L SA  K    NR +A A A R G++
Sbjct: 162 QIGRALHLSAGTVRNHLSSAIGKTGTANRTEAAAVAARNGWL 203


>gi|157376272|ref|YP_001474872.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157318646|gb|ABV37744.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 220

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               SS   +L+ R+   L +  DG  +++IA  LGLS  T+ A+  +  +KL    R Q
Sbjct: 141 ADSMSSKIMSLSPRQHRILMMFADGMLNKQIAYDLGLSEATIKAHASAIFLKLGVHTRTQ 200

Query: 224 AIA 226
           A+ 
Sbjct: 201 AVI 203


>gi|254254353|ref|ZP_04947670.1| regulatory protein LuxR [Burkholderia dolosa AUO158]
 gi|124898998|gb|EAY70841.1| regulatory protein LuxR [Burkholderia dolosa AUO158]
          Length = 277

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 12/224 (5%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             + H    +I                     L+ +L              +    D   
Sbjct: 53  FAQCHARLRQIGFSTLGYGAYEMIGRRILCAHLLRDL--APATFMQPYIEGMLYESDPRF 110

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVI 133
                   P+ W+  + E   + SG   V    G L      +G+ F +          +
Sbjct: 111 AQVRQSGFPVAWRLDEIEAAAQRSGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAV 170

Query: 134 FTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGD 187
             +        + + VI  A      V    L   + R +  R   L + +   L+    
Sbjct: 171 NVTSETHGTEWIDDRVIGGALAVSLAVHRVALPFLEARIARMRGFVLGDEQQQVLERLVH 230

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G + +EIA  L  S+H V  ++ S     +  NR Q    A R 
Sbjct: 231 GLSDQEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274


>gi|119964358|ref|YP_946356.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119951217|gb|ABM10128.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 227

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT++E   +QL G G ++ E+A +L ++  T+ A   +   KL   +R+Q +  A+  
Sbjct: 153 DALTKKELEVIQLLGRGMSNREMAAELFVTESTIKARFVNVMEKLGVRDRVQILVAAVEG 212

Query: 232 GYI 234
           G +
Sbjct: 213 GLV 215


>gi|104782605|ref|YP_609103.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111592|emb|CAK16313.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 270

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 23/181 (12%)

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
                   D F        L  + +                      +    + F + LG
Sbjct: 73  YANGLYLLDPFYISSRERPLTGLVRLADVAPEQFQQTDYYRLYFTHNVVADEVQFNLALG 132

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFK--KRSSAARNL------ 174
             +   +           + I +          ++   L   +  +R+ A   L      
Sbjct: 133 DGRTLCLSLGG-RSRFDAQAIAQLELVRPWLIGLLRQRLHFEQLPERAPAKPALGLAQGR 191

Query: 175 -----------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                      T RE   ++L   G++++E A KL LS  TV  +  +   KLD  ++ +
Sbjct: 192 DEARRQLESVLTARELDVVRLILSGHSNKETAIKLQLSAETVKVHRRNVYRKLDVNSQSE 251

Query: 224 A 224
            
Sbjct: 252 L 252


>gi|29829419|ref|NP_824053.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606526|dbj|BAC70588.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 213

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L   G G ++ EIA +L ++  TV  ++     KL+  +R+QA   A   
Sbjct: 152 DVLTRREREVLSCLGRGMSNAEIAARLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQEL 211

Query: 232 G 232
           G
Sbjct: 212 G 212


>gi|2765824|emb|CAB09344.1| SsrB [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 193

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+L  +GYT+  I+EKL +S+ TV  +  +   KL      + +  A R   
Sbjct: 131 LTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 190

Query: 234 I 234
           I
Sbjct: 191 I 191


>gi|86134557|ref|ZP_01053139.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
 gi|85821420|gb|EAQ42567.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
          Length = 217

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RET  L     G     I++ L +S  TV  ++ +   KL   ++++A+ KA +  
Sbjct: 156 KLTKRETEILIQLSKGLNYNSISDNLIISPSTVRKHIENIYKKLQVHSKMEAVMKAQKRN 215

Query: 233 YI 234
            I
Sbjct: 216 LI 217


>gi|304321036|ref|YP_003854679.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303299938|gb|ADM09537.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 200

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L    +       LT RE        +G T++E+A +LG S  T+  +      KL   N
Sbjct: 126 LAPMPEDWPQLDALTPREREVALALNEGLTNKEVARRLGCSPRTIEVHRARVFHKLGVSN 185

Query: 221 RIQAIA 226
               + 
Sbjct: 186 IAGLVR 191


>gi|113971949|ref|YP_735742.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|117922250|ref|YP_871442.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|113886633|gb|ABI40685.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
 gi|117614582|gb|ABK50036.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 198

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L ++E   L+ A +G ++ EIAE L ++  TV  YL  A  KL+A NR
Sbjct: 126 ELAIMAIGDVDPLNDKERRALRFASEGKSTAEIAEMLFIAEGTVRNYLSEAIAKLNASNR 185

Query: 222 IQAIAKAIRFGYI 234
           I A   A + G++
Sbjct: 186 IDAARIAKQKGWL 198


>gi|150005395|ref|YP_001300139.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254883802|ref|ZP_05256512.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294777176|ref|ZP_06742633.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319643530|ref|ZP_07998153.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|149933819|gb|ABR40517.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254836595|gb|EET16904.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294449045|gb|EFG17588.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317384935|gb|EFV65891.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 203

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++E AEKL LS+HTV  +  +   KL   +       AI  
Sbjct: 132 EALSQREKEIICCVVRGMTNKETAEKLFLSIHTVITHRRNIARKLQIHSPAGLTIYAIVN 191

Query: 232 GYI 234
             +
Sbjct: 192 KLV 194


>gi|194367747|ref|YP_002030357.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194350551|gb|ACF53674.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 221

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R LT ++   LQ+ G G  +++IA  L +S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|312888670|ref|ZP_07748238.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311298837|gb|EFQ75938.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 313

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           LT  E   +Q    G +++EIA+ + +S +TV  +L +   K++  +R   I
Sbjct: 251 LTRTEILIIQYIYKGKSNKEIADLMSISENTVKKHLQNVYRKVNVKSRAALI 302


>gi|302038390|ref|YP_003798712.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300606454|emb|CBK42787.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 215

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   L++RE   L L   G T  +IAE + LSV T++ Y      K++  N  +    A+
Sbjct: 150 AHERLSDREYEVLCLIASGQTVSDIAESIHLSVTTISTYRARILDKMNLKNNAELTRYAL 209

Query: 230 RFGYI 234
           + G +
Sbjct: 210 QHGLV 214


>gi|258655289|ref|YP_003204445.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558514|gb|ACV81456.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Nakamurella multipartita DSM 44233]
          Length = 884

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +    +LTERE   L+       + EIA+ L +SV+TV A+L S   KL   NR +
Sbjct: 814 AHSPAGQVEHLTERELIVLKYLPTMLKAGEIADDLFVSVNTVKAHLRSMYRKLGVSNRRE 873

Query: 224 AIAKAIRFGYI 234
           A+ +A   G +
Sbjct: 874 AVERARSQGLL 884


>gi|88797997|ref|ZP_01113584.1| two-component transcriptional regulator, LuxR family protein
           [Reinekea sp. MED297]
 gi|88779194|gb|EAR10382.1| two-component transcriptional regulator, LuxR family protein
           [Reinekea sp. MED297]
          Length = 303

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT RE+  L    +G T+ E AE L +S  TVN +L     KL   NR  A   A++ 
Sbjct: 238 LTGRESEVLYWIANGKTNRETAEILAMSPRTVNKHLEQIFSKLGVDNRTSAAGVALKL 295


>gi|328885874|emb|CCA59113.1| two-component regulator [Streptomyces venezuelae ATCC 10712]
          Length = 221

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 162 ELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            L  +R   A +       L+ RE   L+L  +G +++ I   +GLS  TV ++L     
Sbjct: 141 RLGHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIAR 200

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL   +R   +A A+R G I
Sbjct: 201 KLGTGDRAGMVAVALRTGII 220


>gi|326794785|ref|YP_004312605.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326545549|gb|ADZ90769.1| transcriptional regulator, LuxR family [Marinomonas mediterranea
           MMB-1]
          Length = 208

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             L++RE         G T+++IA ++ +   TV A+L +   KL+  +R+     
Sbjct: 150 DELSDRERDVALFIAKGLTNKQIAGEMDIVERTVKAHLTAIFKKLNVKDRLALALL 205


>gi|218528264|ref|YP_002419080.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218520567|gb|ACK81152.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 500

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYT 190
           +E +     V+ +A    + VI     + K             LT RE   L     G T
Sbjct: 383 TELIAAIETVMADASWFSHGVIEKLALMRKPPPPGKPAALVEKLTRRERDLLLGICKGAT 442

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             EIA +LGLS+ TV  +L S   K+    R   +  A   G 
Sbjct: 443 DSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERGI 485


>gi|86739704|ref|YP_480104.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86566566|gb|ABD10375.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 814

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 62/228 (27%), Gaps = 12/228 (5%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++  +   +      +  R     F  + +        +           ++       
Sbjct: 547 REEQDAAATVFAECVALTERFGECCFRSFALCGLGLAAWQ----LGELEQAMEHHAAAIS 602

Query: 68  LIETYGDDF-LFHFNSGLLPIIWQSIQEETVI---ESSGQLSVRLEGGLLPFAGIAFPVR 123
           L   + D   +         ++  + +         ++G++       +  F   +F  R
Sbjct: 603 LKYAFHDHVGIAVALEQQAWVMASAGRHHESAVLLGAAGRIWRETGASIAVFGLASFHHR 662

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAARN---LTERET 179
                   +        LA    ++               +      A      LT RE 
Sbjct: 663 CEASLRRVLDQRKLERALAQGAELDLDEAVAAATQGTGTPVAHPVVPAGEPEVPLTPRER 722

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               L   G +++EIA  L ++  T   ++     KL   +R Q +A 
Sbjct: 723 QVADLVARGLSNKEIASYLVIAQRTAEGHVERILGKLGFTSRAQIVAW 770


>gi|148252117|ref|YP_001236702.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146404290|gb|ABQ32796.1| putative Transcriptional regulatory protein, luxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 206

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           ++LT RE   L+L   G++++E A ++G+S  T  ++   A  KL A N  + +  A+
Sbjct: 144 KSLTPREREVLELISAGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELVRAAL 201


>gi|328883545|emb|CCA56784.1| two component transcriptional regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 210

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   +++   G T ++IA +LG+S HTV+ Y+     KL   N+ + +  A+ +G+
Sbjct: 150 LSVRERQVIRMLTHGLTHDQIARRLGISRHTVDTYVKRMRSKLGLGNKAELVRAAMAYGW 209


>gi|319648166|ref|ZP_08002383.1| YfiK protein [Bacillus sp. BT1B_CT2]
 gi|317389801|gb|EFV70611.1| YfiK protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           I+       ++ ++  E  +       +L TERE   + L   G +++EI+++L +S  T
Sbjct: 140 IVMQDIILDKIKSNLAEHKEAEPKIDESLFTERELGIMALIARGLSNKEISKELFISEGT 199

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           +  Y+ S   K    +R Q    
Sbjct: 200 IANYISSILGKTGLEHRTQIAIY 222


>gi|317491608|ref|ZP_07950044.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921155|gb|EFV42478.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 218

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLTPQTDSPFASLSERELQIMLMLTKGSKVVEISEQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|314991314|ref|ZP_07856793.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594087|gb|EFR72932.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
          Length = 209

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + +ERE + ++    G  ++EIA+ L LS  TV  Y+     KLD  +R Q      + 
Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 207


>gi|257885374|ref|ZP_05665027.1| regulatory protein [Enterococcus faecium 1,231,501]
 gi|257821230|gb|EEV48360.1| regulatory protein [Enterococcus faecium 1,231,501]
          Length = 209

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + +ERE + ++    G  ++EIA+ L LS  TV  Y+     KLD  +R Q      + 
Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 207


>gi|297563287|ref|YP_003682261.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847735|gb|ADH69755.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 225

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
            A E+++ A G     +             A  L+ERE    +L G G T+ E+A  L +
Sbjct: 132 PAAELLVAALGEGPSTVPAADPPRPPGHGEAPRLSEREEEVARLVGTGATNREVARALFI 191

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +  T   ++ S   KL   +R +        
Sbjct: 192 TEGTAKNHVTSILRKLGLRDRTRLALWVRER 222


>gi|167570250|ref|ZP_02363124.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 83

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  + + A   L+ RE   ++L   G T  +IA + G S+ TV+ +  +A  KL   + +
Sbjct: 12  LAMRAADAPPQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDV 71

Query: 223 QAIAKAIRFGYI 234
                A   G +
Sbjct: 72  DLFMYASENGLV 83


>gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis]
 gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis]
          Length = 213

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 75/221 (33%), Gaps = 23/221 (10%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +    L L+ + +    + +       SAL+  +R++    L +  +   D       
Sbjct: 4   VDDTPDNLALLSDALDEVGYMVLVALDGLSALNRIQRRRPDLILLDAMMPGLDGFETCQR 63

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
              D       +  +P++       T +  S  +             +  P+        
Sbjct: 64  IKAD-----AATADIPVL-----FMTALTDSEHVVKGFAA--GGIDYVTKPINTE----- 106

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDG 188
             +       L    I++   A  Q     L  E      SA   LTERE   L+    G
Sbjct: 107 -EVLARVASHLRTARILQTARAASQAQPLTLNDEPAYATLSARFQLTEREVEVLRWVACG 165

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            T+ +I + LGLS  TVN +L    VKL    R  A + A+
Sbjct: 166 KTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVAL 206


>gi|218753069|ref|ZP_03531865.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|253799593|ref|YP_003032594.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254550372|ref|ZP_05140819.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|297633912|ref|ZP_06951692.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297730900|ref|ZP_06960018.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|313658233|ref|ZP_07815113.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|253321096|gb|ACT25699.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|328459339|gb|AEB04762.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 870

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 801 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 860

Query: 224 AIAKAIRF 231
            + +A + 
Sbjct: 861 LVQEAAQH 868


>gi|69249446|ref|ZP_00604982.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|257880327|ref|ZP_05659980.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257894240|ref|ZP_05673893.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260562369|ref|ZP_05832883.1| regulatory protein [Enterococcus faecium C68]
 gi|293553074|ref|ZP_06673716.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|293559445|ref|ZP_06675983.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|293568332|ref|ZP_06679655.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|294618821|ref|ZP_06698347.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|314937987|ref|ZP_07845298.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314941587|ref|ZP_07848471.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948427|ref|ZP_07851815.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314951384|ref|ZP_07854436.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314995348|ref|ZP_07860454.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194157|gb|EAN08690.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|257814555|gb|EEV43313.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257830619|gb|EEV57226.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260073293|gb|EEW61634.1| regulatory protein [Enterococcus faecium C68]
 gi|291588941|gb|EFF20766.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|291594944|gb|EFF26295.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|291602783|gb|EFF32993.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|291606600|gb|EFF35996.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|313590441|gb|EFR69286.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313596442|gb|EFR75287.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313599607|gb|EFR78450.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642662|gb|EFS07242.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313645152|gb|EFS09732.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 209

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + +ERE + ++    G  ++EIA+ L LS  TV  Y+     KLD  +R Q      + 
Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 207


>gi|271967438|ref|YP_003341634.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510613|gb|ACZ88891.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFKK 166
           L    L  AG            G V   ++   +L+      A                +
Sbjct: 91  LRAMSLGAAGFLLKDTPPEDLIGLVRVAADGHTVLSP----AATRRLLTASAGHGAARDR 146

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             +   +LT+RE   L   G+G ++ +IA +L LS  T+ +Y+    VKL   NR QA  
Sbjct: 147 ALARIADLTDREVEVLTCLGEGLSNAKIARRLYLSEATIKSYVSRMLVKLGFSNRTQAGL 206

Query: 227 KAIRFGY 233
            A   G 
Sbjct: 207 LASEAGL 213


>gi|15893467|ref|NP_346816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023003|gb|AAK78156.1|AE007530_7 Response regulator, CheY-like receiver domain and HTH DNA-binding
           domain [Clostridium acetobutylicum ATCC 824]
 gi|325507583|gb|ADZ19219.1| Response regulator, CheY-like receiver domain protein and HTH
           DNA-binding domain protein [Clostridium acetobutylicum
           EA 2018]
          Length = 213

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT RE         G ++  IAE L L+  T+  Y+     KL+  NR + I  
Sbjct: 155 LTPREMDVANHVLKGKSNRAIAEALFLTEGTIKNYVSKILEKLELGNRSELILY 208


>gi|319648196|ref|ZP_08002413.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2]
 gi|317389831|gb|EFV70641.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2]
          Length = 213

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L L    S    +LT+ E   LQ    G T++EIA  L +S   V  +L     KL
Sbjct: 133 LLQKLRLDSDLS-VDEHLTDTELDILQKVASGKTNKEIAADLQMSTRNVEYHLSKIYKKL 191

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R  A+ K      I
Sbjct: 192 KVTSRYCAVKKGTMLNLI 209


>gi|284042085|ref|YP_003392425.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946306|gb|ADB49050.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 216

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184
               GY++  +    L   V   A G      +    L  + R+     +T+RE   L L
Sbjct: 99  AGATGYLLKDAPRDELLRAVSAAARGEAVLAPSVATRLLGRVRAPDGEPVTDREREVLAL 158

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G T+ E A +L +S  T+  +L     KL   +R  A+A A   G +
Sbjct: 159 VAQGATNREAARRLFISEATIKTHLLHVYAKLGVNDRAAAVAAAYDRGLL 208


>gi|238062942|ref|ZP_04607651.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237884753|gb|EEP73581.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 217

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 152 ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              QVI         R++ AR     LT+RE   L L G G ++ +IA +L L   TV  
Sbjct: 129 ITAQVIGRLRATGLGRAAEARAKVQQLTDRERDVLALVGAGLSNAQIARRLHLVEGTVKG 188

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +   +L   NR+QA   A   G +
Sbjct: 189 HVSTILARLGLANRVQAAVLAHEAGLV 215


>gi|281420857|ref|ZP_06251856.1| transcriptional regulator GerE, LuxR family [Prevotella copri DSM
           18205]
 gi|281405149|gb|EFB35829.1| transcriptional regulator GerE, LuxR family [Prevotella copri DSM
           18205]
          Length = 265

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE + + L   G +S+ I+ +L +S +TV+ +  +   K+ A N  +A  KA + G 
Sbjct: 201 LSEREITIMNLVSQGLSSKAISIRLNISKNTVDRHRQNIIKKMQAANMAEACHKAKQLGI 260


>gi|167032249|ref|YP_001667480.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166858737|gb|ABY97144.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 216

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R QA     + 
Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210


>gi|114764255|ref|ZP_01443483.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543203|gb|EAU46220.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 234

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
               +    LT ++   L L  +G  +++IA  L ++  TV A++ +   KL   +R QA
Sbjct: 155 DDALARLATLTNQQARILSLICEGKLNKQIAYDLTIAETTVKAHVTAIMRKLGVHSRTQA 214

Query: 225 IAKAIRF 231
           +  A   
Sbjct: 215 VLIAQEA 221


>gi|52082321|ref|YP_081112.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787713|ref|YP_093542.1| hypothetical protein BLi04036 [Bacillus licheniformis ATCC 14580]
 gi|52005532|gb|AAU25474.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52350215|gb|AAU42849.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 210

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   L L    S    +LT+ E   LQ    G T++EIA  L +S   V  +L     KL
Sbjct: 130 LLQKLRLDSDLS-VDEHLTDTELDILQKVASGKTNKEIAADLQMSTRNVEYHLSKIYKKL 188

Query: 217 DAVNRIQAIAKAIRFGYI 234
              +R  A+ K      I
Sbjct: 189 KVTSRYCAVKKGTMLNLI 206


>gi|34498416|ref|NP_902631.1| transcriptional regulatory, LuxR family [Chromobacterium violaceum
           ATCC 12472]
 gi|34104270|gb|AAQ60629.1| probable transcriptional regulatory, LuxR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 206

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 118 IAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI-----TDFLELFKKRSSA 170
           I                +   +F+    + +     A   V             +K S+A
Sbjct: 79  IMLTAHGDVPHAVAALKLGALDFIEKPFDDVHLLERAAAAVALDEQNRQRHGHQRKVSAA 138

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LTERE   +QL   G  +++IAE+L +S+ TV  +      K+   + ++  
Sbjct: 139 LALLTEREREVMQLILAGKLNKQIAEELSISMKTVEVHRSRVFEKMGVKSAVELA 193


>gi|332991848|gb|AEF01903.1| DNA-binding response regulator, LuxR family protein [Alteromonas
           sp. SN2]
          Length = 201

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ +E+  L+LA DG  + +IA+KL LS  TV  YL  A  KLDA NR+ A   A + G
Sbjct: 140 PLSAKESKALKLAADGLKTHDIAQKLFLSEGTVRNYLSEAIAKLDATNRVDAARIAKQKG 199

Query: 233 YI 234
           ++
Sbjct: 200 WL 201


>gi|299140322|ref|ZP_07033486.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298597710|gb|EFI53884.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 200

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 40/64 (62%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             +LT RE   L L  DG+ ++++A+ LG++  TVN ++ +   KL A +R  A+A A+R
Sbjct: 135 GEHLTVRELEVLALIRDGHANKQVADILGIAETTVNFHISNLVKKLKANDRTHAMAIAVR 194

Query: 231 FGYI 234
            G++
Sbjct: 195 RGFL 198


>gi|238028033|ref|YP_002912264.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237877227|gb|ACR29560.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 212

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++      LT R
Sbjct: 97  VPMAVSTMKKGAMDFI-EKPFDEAELRSLVERMLNKARSESKTVQEQRAASERLSKLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|254524890|ref|ZP_05136945.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Stenotrophomonas sp. SKA14]
 gi|219722481|gb|EED41006.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Stenotrophomonas sp. SKA14]
          Length = 215

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 1/112 (0%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCL 182
                 G      E L    +V          +  +  L   +   S   +L+ RE    
Sbjct: 98  GAAGYIGKGCDAQELLRAVRDVAAGRRYLGTSISQNLALSTVEGNGSPFDSLSPRELEVA 157

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   G   E+IA +L LS  TVN +      K+   + I     A ++G +
Sbjct: 158 LLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLV 209


>gi|254417726|ref|ZP_05031450.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3]
 gi|196183903|gb|EDX78879.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3]
          Length = 209

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA   LTERE + L+   +G  ++EIA +L +SV TV A +     KLD  +R +A+  A
Sbjct: 142 SAGDRLTEREIAILKAISEGRANKEIARRLHVSVDTVKADMKRIFSKLDVTDRTRAVIVA 201

Query: 229 IRFG 232
           I+ G
Sbjct: 202 IQRG 205


>gi|163855189|ref|YP_001629487.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258917|emb|CAP41216.1| transcriptional regulator, LuxR-family [Bordetella petrii]
          Length = 186

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + R S   +LT RE        +G T +E A +LG+S  TV  + G    KL+A N  + 
Sbjct: 116 QHRPSKTASLTPREQEIAGFIVNGLTCKETASELGISHRTVEVHRGRLMRKLNAKNTAEL 175

Query: 225 IAK 227
           +++
Sbjct: 176 VSR 178


>gi|88807300|ref|ZP_01122812.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88788514|gb|EAR19669.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 228

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                 E  + A    +   +  L   +    +   LT RE   L     G +  EIAE 
Sbjct: 130 EDRKPLEAAVLAVMGDHSYRSPSLRSDELPYLSCPRLTPREYEVLDRLARGMSDREIAED 189

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L ++  T   Y       L+  NR+QA+ K +R G +
Sbjct: 190 LIVTEETARTYTKRLLRTLEVNNRVQAVLKGMRCGMV 226


>gi|87118437|ref|ZP_01074336.1| Response regulator [Marinomonas sp. MED121]
 gi|86166071|gb|EAQ67337.1| Response regulator [Marinomonas sp. MED121]
          Length = 207

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT ++   L +   G  +++IA +L +   TV  ++     KL  +NR QA   
Sbjct: 143 QLTPQQFRVLTMIAKGDLNKQIAYQLNVKESTVKTHISEIFKKLGIINRTQAALF 197


>gi|330466590|ref|YP_004404333.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328809561|gb|AEB43733.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 212

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 17/218 (7%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           L +       + + + A    +  +  +       + I  L                   
Sbjct: 7   LDDHEVVRRGLADLLHASG-DIEVVGESGSAQEAARRIPALRPDVAILDARLPDGNGIDV 65

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              +   +S +  +I  S +++  +                   +   +R     +    
Sbjct: 66  CRDIRAVDSSIKGLILTSYEDDEALF--------AAIMAGASGYVLKQIRGTDLVDAVRR 117

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
             +   +L             +V+       ++     ++LTE+E   L+   +G T+ E
Sbjct: 118 VAAGQSLLDP-------AITTRVLDRIRSGVEQ-PRELQSLTEQERRILEYVAEGLTNRE 169

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           IA K+ L+  TV  Y+ S   KL    R QA   A R 
Sbjct: 170 IAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207


>gi|326802259|ref|YP_004320078.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326553023|gb|ADZ81408.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 214

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLE-LFKKRS---SAARNLTERETSCLQLAGDG 188
              S    L ++    A     ++         ++RS   +    LT RE + L    +G
Sbjct: 109 WLISTIKDLQHDGAPMAPIIARKLFNFIYRKCDERRSVKINRDYQLTLREKTILNYLVNG 168

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + + I  +LG+S  T+ +++     KL+  +  + +AKAI+   +
Sbjct: 169 LSYKMIGHELGISYETIRSHMKKVYRKLEVSSLTEVVAKAIKQEIV 214


>gi|325275199|ref|ZP_08141166.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51]
 gi|324099686|gb|EGB97565.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51]
          Length = 207

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              +                 L+ RE + LQ    G +++EIA+ + LS  TV+ Y    
Sbjct: 126 NQALHAARGRGTGSEVDMVNRLSAREMTVLQQLARGRSNKEIADSMYLSNKTVSTYKSRL 185

Query: 213 TVKLDAVNRIQAIAKAIRFGY 233
            +KL+A + +  I  A R G 
Sbjct: 186 LLKLNARSLVDLIELAQRQGL 206


>gi|320325633|gb|EFW81695.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 208

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLV 208


>gi|262191075|ref|ZP_06049282.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|262033051|gb|EEY51582.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
          Length = 265

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 25  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 82  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 141

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 142 PRAFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRIWVEKAIQSFGAQRL 201

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIAE L +S  TV  +      +L   +  + 
Sbjct: 202 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYTQLHVSSLSEL 251


>gi|194365304|ref|YP_002027914.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194348108|gb|ACF51231.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 215

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 1/112 (0%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCL 182
                 G      E L    +V          +  +  L   +   S   +L+ RE    
Sbjct: 98  GAAGYIGKGCDAQELLRAVRDVAGGRRYLGTSIAQNLALSTVEGNGSPFDSLSPRELEVA 157

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L   G   E+IA +L LS  TVN +      K+   + I     A ++G +
Sbjct: 158 LLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLV 209


>gi|329939589|ref|ZP_08288890.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301159|gb|EGG45054.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 204

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 12/161 (7%)

Query: 83  GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142
               +    +  E    +  + + ++   +     +              +       L 
Sbjct: 47  RAHAVDVALLDIEMPGATGIEAAAQVHREMPDVKLVVLTTFGRPGYLRAAMEAGADAFLV 106

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA---------ARNLTERETSCLQLAGDGYTSEE 193
            +          Q +   L   +              A  LT+RE   L+ A DG T+ E
Sbjct: 107 KD---APAAQLAQAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGATNAE 163

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +A  L LS  TV  YL +A  KL A NR +A+  A   G++
Sbjct: 164 LATALHLSQGTVRNYLSTAIQKLTARNRTEAVRIAREKGWL 204


>gi|329851875|ref|ZP_08266556.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328839724|gb|EGF89297.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 212

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 34/88 (38%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           I     +  + I D              LT RE   L L   G  + + A  LGL+  TV
Sbjct: 122 IPALSPSIARRIVDHFRSTAVAHQPEATLTTRELDVLGLISKGLRNADAAHALGLAESTV 181

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +++ S   KL    R +A  +A R G 
Sbjct: 182 ASHIKSIYSKLGITTRAEAAIRAQRMGL 209


>gi|209695582|ref|YP_002263511.1| response regulator [Aliivibrio salmonicida LFI1238]
 gi|208009534|emb|CAQ79826.1| response regulator VarA [Aliivibrio salmonicida LFI1238]
          Length = 214

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  + L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFTPDSENPFKELSERELQIMIMITKGEKVTDISEQLNLSPKTVNSYRYRLFSKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 ISGDVELTHLAIRHGIL 209


>gi|1825466|gb|AAD12185.1| utilizing regulatory protein tutB [Thauera aromatica]
          Length = 218

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 24/169 (14%)

Query: 90  QSIQEETVIESSGQLSVRLEG---------GLLPFAGIAFPVR--LGFHKNGYVIFTSEF 138
               E    E+   L + +             L   G+  P+    G       +   + 
Sbjct: 41  SEFLEHARSEACACLVLDVRMPRMSGFDLQHALSKNGVDIPIIFITGHGDIPMAVRAIKS 100

Query: 139 LMLA-------NEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDG 188
             L         E ++EA      +  +  E      K       LT+RE     L   G
Sbjct: 101 GALEFLPKPFRAEELLEAINRALNIDQEAREYKAELDKILKKYEGLTDREKEVFPLIAQG 160

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF---GYI 234
             +++IA  LG++  T+  +  + T K+        +    +    G I
Sbjct: 161 LLNKQIAGYLGITEVTIKVHRHNITRKMGVRTLANLVRLYEKLKNAGLI 209


>gi|148546374|ref|YP_001266476.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148510432|gb|ABQ77292.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 236

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              +           +     L+ RE + LQ    G +++EIA+ + LS  TV+ Y    
Sbjct: 155 NQALHASRGRGAGSETDMVNRLSAREMTVLQQLARGRSNKEIADSMYLSNKTVSTYKSRL 214

Query: 213 TVKLDAVNRIQAIAKAIRFGY 233
            +KL+A + +  I  A R G 
Sbjct: 215 LLKLNARSLVDLIELAQRQGL 235


>gi|333023482|ref|ZP_08451546.1| putative two-component response regulator [Streptomyces sp. Tu6071]
 gi|332743334|gb|EGJ73775.1| putative two-component response regulator [Streptomyces sp. Tu6071]
          Length = 227

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 140 MLANEVIIEAHGACYQ--------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
             +  +++EA  A  +        +    L     +      L+ RE    +    G T+
Sbjct: 118 DASPALLVEAVRAAARGDALVSPSLTLRLLRGLAPQDPEPTVLSAREQEITEHVAQGRTN 177

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +EI   LGLS+ +V  YL     KL   NR++  A A   G +
Sbjct: 178 QEIGTALGLSLSSVKTYLDRVRTKLGLRNRVEIAAWAWERGLV 220


>gi|329114860|ref|ZP_08243616.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001]
 gi|326695757|gb|EGE47442.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001]
          Length = 299

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLT RE   L     G T+ +IAE L +S  TVN +L  A VK+   NR  A A+ ++  
Sbjct: 238 NLTAREAEVLFWISKGKTNRDIAEILSISHRTVNKHLEQAYVKIGVENRASATARVLQAL 297

Query: 233 YI 234
            +
Sbjct: 298 LV 299


>gi|317475733|ref|ZP_07934992.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908116|gb|EFV29811.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 70

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T+RE   LQ    G  + EIA  LG+S +TV  +      K  A N I  + KA+  G++
Sbjct: 8   TKREQDVLQAVAKGLNTHEIAHLLGISENTVETFRKKLLSKFGAKNAIDLVVKAVSQGWV 67


>gi|303238259|ref|ZP_07324795.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302594305|gb|EFL64017.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 215

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              K  +  + +L ERE   +++  +G +++EIA KL LS       +     KLD  +R
Sbjct: 143 SAEKNDNPISIDLKEREVEIIRMIAEGMSNKEIASKLCLSFGRTKNIISEILAKLDLSDR 202

Query: 222 IQAIAKAIRFGYI 234
            Q  + A +   I
Sbjct: 203 NQLASFAFKNKLI 215


>gi|256827483|ref|YP_003151442.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583626|gb|ACU94760.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 215

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              + R+     LT+RE   ++   +G  + E+A+ L +S  TV  ++ +   KL   NR
Sbjct: 142 SADRLRAETFSVLTDREYEVVEAVAEGLDNAEVAQTLYMSEGTVRNHISTILAKLGLKNR 201

Query: 222 IQAIAKAIRFGY 233
            Q   +  R   
Sbjct: 202 TQIAVRYYRASL 213


>gi|167578168|ref|ZP_02371042.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 212

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 49/188 (26%), Gaps = 13/188 (6%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFL-FHFNSGLLPII--WQSIQEETVIESSGQL 104
           +    EL                   D        S    ++     + +E     +   
Sbjct: 23  EPADFELFGMTAAMHRAYVS-RYRPLDPLHPARCASQPGAVVTLASQLPDERR--DASSY 79

Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLE 162
                        +   +R G                  +   I   H     V    L 
Sbjct: 80  WTGFLRRHGVADVVEVLLRDGGAPVAAFSLLRLAGGGRYSAAEIAALHAVQPVVEVALLP 139

Query: 163 LFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
             +     +R +    LT RE    +L  DG +++ IA  L L   TV  +L     KL 
Sbjct: 140 PLRVVRGIRRIACDVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLG 199

Query: 218 AVNRIQAI 225
             NR + +
Sbjct: 200 VSNRTELV 207


>gi|153811961|ref|ZP_01964629.1| hypothetical protein RUMOBE_02354 [Ruminococcus obeum ATCC 29174]
 gi|149831860|gb|EDM86946.1| hypothetical protein RUMOBE_02354 [Ruminococcus obeum ATCC 29174]
          Length = 206

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E+E   ++L  +GY+++EIA ++ L   TV  YL +   KL   +R Q      + 
Sbjct: 150 EKEKEIIRLVANGYSNKEIAAEMYLGEGTVRNYLSAILDKLQLRDRTQVAVFYYKH 205


>gi|148822580|ref|YP_001287334.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|289554850|ref|ZP_06444060.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289761519|ref|ZP_06520897.1| regulatory protein [Mycobacterium tuberculosis GM 1503]
 gi|148721107|gb|ABR05732.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|289439482|gb|EFD21975.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289709025|gb|EFD73041.1| regulatory protein [Mycobacterium tuberculosis GM 1503]
          Length = 887

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 818 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 877

Query: 224 AIAKAIRF 231
            + +A + 
Sbjct: 878 LVQEAAQH 885


>gi|71277777|ref|YP_268662.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71143517|gb|AAZ23990.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 219

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           LT RE   LQ    G  +++IA  L +S  TV +++ S   KL A NR++ +
Sbjct: 154 LTRRELIVLQHLTKGEANKQIAFNLHISETTVKSHVSSILKKLGASNRVKVV 205


>gi|54023878|ref|YP_118120.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54015386|dbj|BAD56756.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 207

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                    + +   L   +       +LTE+E   L L G+G T+ +IA ++ L+  TV
Sbjct: 122 RSLLDNRAAETLEARLRGAEG---PLADLTEQERKLLALLGEGLTNRQIAARMFLAEKTV 178

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
             Y+     KL    R QA   A R 
Sbjct: 179 KNYVSRLLAKLGMERRTQAAVLATRL 204


>gi|88812156|ref|ZP_01127408.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Nitrococcus mobilis Nb-231]
 gi|88790660|gb|EAR21775.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Nitrococcus mobilis Nb-231]
          Length = 224

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + LT R++  LQL  +G +++ IA +L +   TV  ++     K  A+NR  A   A R 
Sbjct: 148 QGLTPRQSEVLQLLREGKSNKIIAYELKMQESTVKVHVRQIMKKFKAINRTHAAFLANRL 207


>gi|319901236|ref|YP_004160964.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
 gi|319416267|gb|ADV43378.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
          Length = 205

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   +     G T++ IA+KL LS+HTV  +  +   KL   +       AI    
Sbjct: 136 LSQREREIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 195

Query: 234 I 234
           +
Sbjct: 196 V 196


>gi|312961834|ref|ZP_07776332.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens WH6]
 gi|311284093|gb|EFQ62676.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens WH6]
          Length = 221

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 160 FLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
              L +    A      LT ++   L+    G ++++IA  L ++  TV A++ +   KL
Sbjct: 139 HRRLNENPGFAPELLQALTRKQLLVLERMTKGESNKQIAYTLEIAETTVKAHVSAILRKL 198

Query: 217 DAVNRIQAIAKA 228
           +  NR+QAI  A
Sbjct: 199 NVHNRVQAILSA 210


>gi|289674631|ref|ZP_06495521.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
          Length = 84

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 11  AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 70

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 71  AALLLQQL 78


>gi|253998442|ref|YP_003050505.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200518|ref|YP_004039176.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985121|gb|ACT49978.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439834|gb|ADQ83940.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 214

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGF---------HKNGYVIFTSEFLMLANEVIIEAHGAC 153
           +   R+         + F +                GYV  T  F  L   V+  A G  
Sbjct: 68  EAMRRILARYRTARVLIFSMHENAAFAMQTLKSGARGYVAKTGSFDELVKAVVEVARGKS 127

Query: 154 ----YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                      L+           L+ RE    +L  +G  +EEIAE L +S  TV  Y 
Sbjct: 128 YISTSIAQKIALQTVIGDGDLISQLSPREFEVFRLFAEGKNAEEIAEVLKISQKTVANYH 187

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL   N ++ +  AI+ G I
Sbjct: 188 TLVKQKLGLSNPVEMVRFAIKHGLI 212


>gi|239820082|ref|YP_002947267.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239804935|gb|ACS22001.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 208

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSA 170
              G      +     GY++       L+  V   A         V    L+        
Sbjct: 85  QSTGWQIRRAVDAGVRGYLLHDCSAEELSEAVRCVAEGRRYLSCPVADQLLDNLSSAVP- 143

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
               T RE   L+L   G  +++I  +LG+   TV A++ +   KL    R+ AI +A R
Sbjct: 144 ----TARELEVLRLMAQGLANKDIGRRLGIGEGTVKAHVKAILRKLRKPTRVAAIGEAFR 199

Query: 231 FGYI 234
            G +
Sbjct: 200 CGLL 203


>gi|157369529|ref|YP_001477518.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157321293|gb|ABV40390.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 213

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQL 184
            +  G   F  +   L   V+        ++      + ++      +L T +E   L L
Sbjct: 105 AYAAGANGFVHKGSRLEQLVLAIETVLAGELSFPAAAMAEETQPTEGSLLTPKELQILGL 164

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
              G ++ +IAE L +S  TV+ +  +   K  A N ++ +A
Sbjct: 165 LSKGLSNLQIAEMLSISNKTVSTHKKNILRKTGASNLLELVA 206


>gi|71279910|ref|YP_266947.1| LuxR family DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71145650|gb|AAZ26123.1| DNA-binding response regulator, LuxR family [Colwellia
           psychrerythraea 34H]
          Length = 219

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +    +LT+++   L +   G  +++IA  L +S  T+ A+  +   KLD  NR Q
Sbjct: 142 DGDIAERVASLTQQQYRILMMFAQGMLNKQIAYDLNVSEATIKAHATAIFRKLDVRNRTQ 201

Query: 224 AIA 226
           A+ 
Sbjct: 202 AVI 204


>gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
          Length = 222

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 138 FLMLANEVIIEAHGACY--QVITDFLELFKKR------SSAARNLTERETSCLQLAGDGY 189
             +L    +IEA       + +++      KR      S+   +LTERE   L L  +G 
Sbjct: 117 RSLLERSQLIEAEWRSRINEPLSNHTSSSHKRHHFHSLSTTNIHLTEREQQVLNLLTEGL 176

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +I + L LS  TV  Y+ S   K D+ NR + +  A+    I
Sbjct: 177 SNIKIGDSLHLSSRTVEKYVSSLLRKTDSSNRAELVRFALENDLI 221


>gi|261209256|ref|ZP_05923648.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289566005|ref|ZP_06446443.1| regulatory protein [Enterococcus faecium D344SRF]
 gi|294616191|ref|ZP_06695988.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|260076802|gb|EEW64537.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289162203|gb|EFD10065.1| regulatory protein [Enterococcus faecium D344SRF]
 gi|291590946|gb|EFF22658.1| DNA-binding response regulator [Enterococcus faecium E1636]
          Length = 209

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + +ERE + ++    G  ++EIA+ L LS  TV  Y+     KLD  +R Q      + 
Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 207


>gi|238920173|ref|YP_002933688.1| response regulator UvrY [Edwardsiella ictaluri 93-146]
 gi|238869742|gb|ACR69453.1| response regulator UvrY [Edwardsiella ictaluri 93-146]
          Length = 218

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  S   +L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLTPQGDSPFGSLSERELQIMLMITKGSKVTEISEQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|77457409|ref|YP_346914.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77381412|gb|ABA72925.1| putative regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 216

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 155 QVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           Q         + ++++    +LT ++   L +  +G  +++IA +L +S  T+ A++ + 
Sbjct: 132 QAFEAVSVSDEAKAASDGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAI 191

Query: 213 TVKLDAVNRIQAIAKAIRF 231
             KL+   R QA     + 
Sbjct: 192 FRKLNVRTRTQAALLLQQL 210


>gi|88799009|ref|ZP_01114590.1| putative transcriptional regulator, LuxR family protein [Reinekea
           sp. MED297]
 gi|88778236|gb|EAR09430.1| putative transcriptional regulator, LuxR family protein [Reinekea
           sp. MED297]
          Length = 218

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +LT ++   L L   GY +++IA +L +   TV  ++     KL   NR QA   
Sbjct: 156 SLTPKQQHVLSLISRGYLNKQIAYELDIKETTVKTHVSEIFRKLGIFNRTQAAIF 210


>gi|226943848|ref|YP_002798921.1| Two-component response regulator, LuxR family [Azotobacter
           vinelandii DJ]
 gi|226718775|gb|ACO77946.1| Two-component response regulator, LuxR family [Azotobacter
           vinelandii DJ]
          Length = 211

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 29/65 (44%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE     L   G    EI E++ LSV TV+ Y      KL   N  + I  AI
Sbjct: 145 PHLRLTDREMQIFNLIVTGARLTEIGERILLSVKTVSTYKTRIMEKLGVNNNAELIQYAI 204

Query: 230 RFGYI 234
           R G +
Sbjct: 205 RHGIL 209


>gi|306842522|ref|ZP_07475173.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2]
 gi|306287378|gb|EFM58858.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2]
          Length = 245

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229


>gi|296169886|ref|ZP_06851498.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum
            ATCC BAA-614]
 gi|295895442|gb|EFG75144.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum
            ATCC BAA-614]
          Length = 1109

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 137  EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIA 195
                                        +KR ++   +LT  E   ++L  +G  ++EI 
Sbjct: 1014 SDFDTNWAEGAALSTEQAIAYAQRGRGERKRPASGWESLTPMEHDVVRLVREGLGNKEIG 1073

Query: 196  EKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +L +S  TV  +L     KL   +R++ I
Sbjct: 1074 ARLFVSPRTVQTHLTHVYAKLGISSRVELI 1103


>gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 222

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L L  +G ++ +I + L LS  TV  Y+ S   K D+ NR + +  A+    
Sbjct: 161 LTEREQQVLNLLTEGLSNIKIGDSLHLSSRTVEKYVSSLLRKTDSSNRAELVRFALENDL 220

Query: 234 I 234
           I
Sbjct: 221 I 221


>gi|294636769|ref|ZP_06715108.1| response regulator UvrY [Edwardsiella tarda ATCC 23685]
 gi|291090028|gb|EFE22589.1| response regulator UvrY [Edwardsiella tarda ATCC 23685]
          Length = 218

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L  +  S    L+ERE   + +  +G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQLAPQSESPFGCLSERELQIMLMITNGSKVTEISEQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|229530306|ref|ZP_04419694.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229332079|gb|EEN97567.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
          Length = 267

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 27  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTLRELLFQRYLTHAYLD-DPFYS 83

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 84  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 203

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIAE L +S  TV  +      +L   +  + 
Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 253


>gi|229009028|ref|ZP_04166367.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228752198|gb|EEM01887.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 201

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L++  +G T+ EI + L L+  TV  YL S+  KL+A +R QAI  A   G
Sbjct: 140 PLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|227504946|ref|ZP_03934995.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198455|gb|EEI78503.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 225

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D L +         +LT RE   L+  G G+++ EI+E++ +S+ TV  ++G    K  +
Sbjct: 142 DTLSISGTDRRVLESLTAREQEILEAIGMGWSNTEISERMFISMPTVKTHVGRVLAKTSS 201

Query: 219 VNRIQAIAKAIRFGYI 234
            +R+ A   A R G +
Sbjct: 202 RDRVHAALFAYRTGVV 217


>gi|157377199|ref|YP_001475799.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157319573|gb|ABV38671.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 209

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+ERE   L L   G T+++I+E L LS+ T+  +      KL+  N  +    
Sbjct: 139 LSEREQEVLNLLTKGMTNKQISEALFLSLRTIEVHRAKVMKKLEVHNMAELAKY 192


>gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 237

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            + F       + +       ++     L   +     N T RE S LQL  +G  ++EI
Sbjct: 138 AARFADTDMGQMAKQITEIRSLLAQADAL-PNQDPVQHNFTPREASVLQLVAEGLMNKEI 196

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +L  S+  V  Y+    +K +  +R + +  A++   +
Sbjct: 197 ARQLETSIRNVEKYVSRLFIKTETSSRTELVRYALQHHLV 236


>gi|52787684|ref|YP_093513.1| YfiK [Bacillus licheniformis ATCC 14580]
 gi|52350186|gb|AAU42820.1| YfiK [Bacillus licheniformis ATCC 14580]
          Length = 230

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
           I+       ++ ++  E  +       +L TERE   + L   G +++EI+++L +S  T
Sbjct: 140 IVMQDIILDKIKSNLAEHKEAEPKIDESLFTERELGIMALIARGLSNKEISKELFISEGT 199

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           +  Y+ S   K    +R Q    
Sbjct: 200 IANYISSILGKTGLEHRTQIAIY 222


>gi|294338655|emb|CAZ86984.1| VsrD [Thiomonas sp. 3As]
          Length = 208

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 33/78 (42%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + +++   +        L++RE        +G +  ++A++L +S  TV+ +      KL
Sbjct: 130 LANYMNEGEAAEEPHARLSDREMQVFMRLVEGKSVNQVADELHISCKTVSTHKTRLMHKL 189

Query: 217 DAVNRIQAIAKAIRFGYI 234
              N    +  A+  G +
Sbjct: 190 ALDNDADLVRYAMHQGIV 207


>gi|238764987|ref|ZP_04625924.1| Response regulator uvrY [Yersinia kristensenii ATCC 33638]
 gi|238696756|gb|EEP89536.1| Response regulator uvrY [Yersinia kristensenii ATCC 33638]
          Length = 218

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L     +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 133 MALGQLEPPTETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 193 ISGDVELTHLAIRHGL 208


>gi|302536696|ref|ZP_07289038.1| two-component system response regulator [Streptomyces sp. C]
 gi|302445591|gb|EFL17407.1| two-component system response regulator [Streptomyces sp. C]
          Length = 208

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 4/168 (2%)

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             GD+ +    S  + +    I+   +        +R     L    +    R G+ +  
Sbjct: 41  ARGDEVVAAARSHDVNVALLDIEMPGMTGIEAAAQLRAALPALKIVVLTTFGRPGYLRRA 100

Query: 131 YVIFTSEFL--MLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                S FL        + +A       Q + D        +  A  LT+RE   L+ A 
Sbjct: 101 MEAGASAFLVKDAPAAQLADAVRKVLAGQRVIDPTLAAAALAEGANPLTDREREVLRAAE 160

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T+ E+A +LGLS  TV  YL +A  KL A NR +A+  A   G++
Sbjct: 161 FGATNAELASRLGLSQGTVRNYLSTAIQKLAARNRAEAVRVAREKGWL 208


>gi|298492499|ref|YP_003722676.1| LuxR family GAF modulated transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298234417|gb|ADI65553.1| GAF modulated transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 256

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 59/216 (27%), Gaps = 30/216 (13%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
              +  I +    +++ +  ++  L    +   I           +   +         +
Sbjct: 58  QALMDTIGDHFGVQHWGISFLDDELLTEIKTPDI------PAVCLEANPVGRY-----VV 106

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
                    +I      +                      +  P+       G + F  +
Sbjct: 107 ERHAPTHEQLILSPEDWKNFCTRHE-------------HIMTGPIVCDGRLVGTLNFARD 153

Query: 138 FLMLANE--VIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTS 191
                     + +    C  +      L  K     S+    LT RE    +L   G T+
Sbjct: 154 PGSAPFNGNDLSDLSALCIHLSAKLATLRAKPKILSSAVNSLLTARELEIAELVAQGLTN 213

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            EI  KL ++ ++V   L     KL    R + +AK
Sbjct: 214 GEIGAKLWITQNSVKQALKRMFRKLGVSARAEMVAK 249


>gi|254466822|ref|ZP_05080233.1| transcriptional regulator, LuxR family, putative [Rhodobacterales
           bacterium Y4I]
 gi|206687730|gb|EDZ48212.1| transcriptional regulator, LuxR family, putative [Rhodobacterales
           bacterium Y4I]
          Length = 242

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 64/211 (30%), Gaps = 14/211 (6%)

Query: 37  TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP-IIWQSIQEE 95
            +N A    + ++L+    +                 D F+        P +      E 
Sbjct: 31  ALNVAEVEIKTRRLLWLRSSMTRAFLAEYAQQKFYEVDQFVSGIGLPFYPSLHVTGTLER 90

Query: 96  TVIESSGQLSVR------------LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143
               S   L                        G +  V     +        +F  +  
Sbjct: 91  ATAPSQRHLDFNWTTWDMGYTLGYAMRFAGACPGTSKTVVFCAGEKASEFTAEQFEKIRQ 150

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
                A   C   +      F  + S    L+ RE   L L   GY +  IA +LG++  
Sbjct: 151 AGTAVAAFICAPGMGQEYPAFAAQES-GNALSSREKQMLALLAAGYLNTRIAHELGIAEV 209

Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           TV   L SA  KL A  R +A+A A+R G +
Sbjct: 210 TVRKTLLSARRKLGAKTREEALAIAVRSGLL 240


>gi|209886246|ref|YP_002290103.1| transcriptional regulatory protein FixJ [Oligotropha
           carboxidovorans OM5]
 gi|209874442|gb|ACI94238.1| transcriptional regulatory protein FixJ [Oligotropha
           carboxidovorans OM5]
          Length = 205

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +    +S   +L+ RE   ++    G +++ IA    +S  T+  Y  +   K+ A + 
Sbjct: 131 AVTADIASRIASLSPRERQVMEGLVAGLSNKLIARNYEISPRTIEVYRANVMTKMQASSV 190

Query: 222 IQAIAKAIRFGYI 234
            + +  AIR G +
Sbjct: 191 SELVRLAIRGGLL 203


>gi|218778430|ref|YP_002429748.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759814|gb|ACL02280.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 557

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 14/125 (11%)

Query: 120 FPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------ 172
           F VR L     G +  +S      NE+I   H            + +K +          
Sbjct: 437 FSVRMLRHGAAGCLSHSSS----VNELIAAVHKVAAGRKHVSNRIAEKLAFEVDIYAPKP 492

Query: 173 ---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               L++RE   + +  +G T +EIA +L LS  T+  Y      K+      Q +   +
Sbjct: 493 FLYKLSDRERQVMFMIAEGKTMKEIASELRLSYKTIATYRTRVFEKMHMRTDAQIVRYVV 552

Query: 230 RFGYI 234
             G +
Sbjct: 553 SKGLL 557


>gi|118578818|ref|YP_900068.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118501528|gb|ABK98010.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 240

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R    + LT RE   L     G+T+ +IAE L +SV TV ++      KL+A  R+  + 
Sbjct: 173 RVPPRKPLTRREAEILGYIAQGHTNRQIAELLFVSVRTVESHRARLQGKLNAHCRMDLVR 232

Query: 227 KAIRF 231
            A   
Sbjct: 233 HAANL 237


>gi|330957744|gb|EGH58004.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 208

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   LQ    G T++EIA+ + LS  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 DRLSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRN 205

Query: 232 GYI 234
           G +
Sbjct: 206 GLV 208


>gi|304408345|ref|ZP_07389992.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304342634|gb|EFM08481.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 222

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE + LQ    G +++EIA  + +S   +   L     KL+  +R +AI +A + G I
Sbjct: 158 QREQAILQEIAQGKSNKEIAAMMFMSQRMIEYNLSKIFEKLNVSSRSEAITEAKKHGLI 216


>gi|262172422|ref|ZP_06040100.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
 gi|261893498|gb|EEY39484.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
          Length = 265

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 25  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 82  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 141

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 142 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRIWVEQAIQSFGAQRL 201

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIAE L +S  TV  +      +L   +  + 
Sbjct: 202 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 251


>gi|209965864|ref|YP_002298779.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
 gi|209959330|gb|ACI99966.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
          Length = 205

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             + +   + T RE   L     G +++EIA  L L   TV  ++     KL A NR QA
Sbjct: 135 DSQLAGGASFTRREREVLDFLLKGCSNKEIARALSLEEVTVKLHVRGLCRKLGAKNRTQA 194

Query: 225 IAKAIRFGY 233
             +A+  G 
Sbjct: 195 AMRAVEMGL 203


>gi|254420099|ref|ZP_05033823.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186276|gb|EDX81252.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 203

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                 +   +LT  +   L+    G  +++IA  LG+S  T+ A+L S   KL   NR 
Sbjct: 132 ADDDLPARVASLTPSQLRILEGLKAGRLNKQIAFDLGVSEATIKAHLTSVFRKLGVHNRT 191

Query: 223 QAIAKAIRF 231
           QA+  A + 
Sbjct: 192 QAVILAKQM 200


>gi|54025254|ref|YP_119496.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016762|dbj|BAD58132.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 872

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L  +R     +LT  E   L+    G T+ +IA  LG+SV+TV  +L     KL   +R
Sbjct: 800 HLAVRRHLTGHSLTGTELRVLKHLPTGRTTSQIAADLGVSVNTVKTHLRGIYGKLGIASR 859

Query: 222 IQAIAKAIRFGYI 234
             A+ +A + G +
Sbjct: 860 ADALTEARQRGLL 872


>gi|23577991|ref|NP_702938.1| putative transcriptional regulatory protein [Corynebacterium
           efficiens YS-314]
 gi|259506139|ref|ZP_05749041.1| two component response regulator [Corynebacterium efficiens YS-314]
 gi|23494817|dbj|BAC19780.1| putative transcriptional regulatory protein [Corynebacterium
           efficiens YS-314]
 gi|259166260|gb|EEW50814.1| two component response regulator [Corynebacterium efficiens YS-314]
          Length = 225

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+      T+ EIA  L +   TV  Y+     K+   +R+     A   
Sbjct: 161 EALTPRELEVLKRVAQAETNAEIANYLHIGSETVKTYVSRLISKIGVRDRVGLAVWAHTS 220

Query: 232 GYI 234
           G +
Sbjct: 221 GIV 223


>gi|299140982|ref|ZP_07034120.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
 gi|298577948|gb|EFI49816.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
          Length = 201

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  A+ L++RE   L L   GY ++EI  +L + + TV ++  +   KL   +     
Sbjct: 128 PRALKAKLLSDREIEVLSLIAQGYINKEIGNQLNIGLTTVISHRKNIVEKLGMKSVSALT 187

Query: 226 AKAIRFGYI 234
             A+  GY+
Sbjct: 188 IYAVMHGYV 196


>gi|281424279|ref|ZP_06255192.1| transcriptional regulator, LuxR family protein [Prevotella oris
           F0302]
 gi|281401548|gb|EFB32379.1| transcriptional regulator, LuxR family protein [Prevotella oris
           F0302]
          Length = 214

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R+  A+ L++RE   L L   GY ++EI  +L + + TV ++  +   KL   +     
Sbjct: 141 PRALKAKLLSDREIEVLSLIAQGYINKEIGNQLNIGLTTVISHRKNIVEKLGMKSVSALT 200

Query: 226 AKAIRFGYI 234
             A+  GY+
Sbjct: 201 IYAVMHGYV 209


>gi|119898962|ref|YP_934175.1| two-component response regulator [Azoarcus sp. BH72]
 gi|119671375|emb|CAL95288.1| two-component response regulator [Azoarcus sp. BH72]
          Length = 215

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 12/136 (8%)

Query: 108 LEGGLLPFAGIAFPV--RLGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQV-- 156
                +   G   P+    G    G  +   +             + +++A     +   
Sbjct: 74  ELQQAILARGWTLPIVFITGHGDVGLAVQAMKCGASDFLEKPFHDQALLDAVTMAIRRGT 133

Query: 157 -ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                L   +  ++A   L+ RE    +L   G  ++ +A  LG+S  TV+ +      K
Sbjct: 134 EARAELARREDAAAALARLSPREREVARLVAQGLPNKRVARALGISEKTVHVHRQHVMEK 193

Query: 216 LDAVNRIQAIAKAIRF 231
               +  +     +R 
Sbjct: 194 AGVASAAELARLMLRA 209


>gi|113866807|ref|YP_725296.1| response regulator [Ralstonia eutropha H16]
 gi|113525583|emb|CAJ91928.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 216

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               ++++   +           LT RE    Q+  +G    E+A  L LS  TV+ +  
Sbjct: 128 AIADKLLSQARQPD--AMLPHARLTARELQVFQMLAEGLGINEVAAALSLSAKTVSTHKA 185

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +   K+D  +    +  AIR G +
Sbjct: 186 NILGKMDIASTAGLVHYAIRHGLL 209


>gi|77459476|ref|YP_348983.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77383479|gb|ABA74992.1| putative luxR family response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 201

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT R+   L+L   G T++EIA +L +S  TV  ++ S    L+  +R  A  K
Sbjct: 142 ALTPRQQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLRVLNVPSRAAAAVK 196


>gi|298250633|ref|ZP_06974437.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548637|gb|EFH82504.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1034

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 112  LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSS 169
               FAG A  + L   +   ++  S    +  + ++              +   +   S 
Sbjct: 910  AGTFAGNAQRLFLDAGEQMAILLRSLLPQVHEQSLLAYIRTLLSAFPTQEQSGTQTLASP 969

Query: 170  AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
                L+ +E   L+L     ++ +IA +L +SV+TV   + S   KL    R  A   A 
Sbjct: 970  LVEPLSPQEMRVLRLLVQQRSNPDIANELIVSVNTVRTQVQSIYAKLGVHTRHAASEVAR 1029

Query: 230  RFGYI 234
                +
Sbjct: 1030 ELHLV 1034


>gi|256785041|ref|ZP_05523472.1| regulatory protein [Streptomyces lividans TK24]
 gi|289768934|ref|ZP_06528312.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24]
 gi|289699133|gb|EFD66562.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24]
          Length = 166

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 37/99 (37%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
                     +   A     +             + A  LT RE   L+L  DG T+ +I
Sbjct: 56  ARPLSDAVAVLGRRARLTLGRAAGPVPASGPADPADALGLTGRERDVLRLVSDGRTNRQI 115

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           AE+L +S  T + ++ +   KL    R +A A A R   
Sbjct: 116 AEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRLAL 154


>gi|238793130|ref|ZP_04636758.1| two-component response regulator [Yersinia intermedia ATCC 29909]
 gi|238727503|gb|EEQ19029.1| two-component response regulator [Yersinia intermedia ATCC 29909]
          Length = 144

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196
            +  +V+IE      +     L +  ++++       L+ RE     L   G TS++IA+
Sbjct: 43  PIDADVLIETISMALEQHEQALAIHSQQAAYQQLISQLSAREQEVAALIIQGETSKQIAQ 102

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +L LS  TV A+  +   KL+  +    I 
Sbjct: 103 RLSLSPRTVEAHRANIFAKLEVNSLASLIH 132


>gi|262393869|ref|YP_003285723.1| BarA-associated response regulator UvrY [Vibrio sp. Ex25]
 gi|262337463|gb|ACY51258.1| BarA-associated response regulator UvrY [Vibrio sp. Ex25]
          Length = 188

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  ++L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 107 MALSQFSPASENPFKDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 166

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 167 INGDVELTHLAIRHGML 183


>gi|120436463|ref|YP_862149.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117578613|emb|CAL67082.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 210

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L  A    T + IA ++ LS  TV  Y  S   KL   +R+  +  AI+ 
Sbjct: 146 EELTAREMEFLNHACSELTYKAIAGEMNLSPKTVENYRESLFSKLRVKSRVGLVIFAIKE 205

Query: 232 GYIC 235
           G IC
Sbjct: 206 G-IC 208


>gi|28898719|ref|NP_798324.1| response regulator [Vibrio parahaemolyticus RIMD 2210633]
 gi|260877284|ref|ZP_05889639.1| response regulator UvrY [Vibrio parahaemolyticus AN-5034]
 gi|269967056|ref|ZP_06181124.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|28806937|dbj|BAC60208.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|269828315|gb|EEZ82581.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|308090311|gb|EFO40006.1| response regulator UvrY [Vibrio parahaemolyticus AN-5034]
          Length = 214

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  ++L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSPASENPFKDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGML 209


>gi|269795006|ref|YP_003314461.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097191|gb|ACZ21627.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 233

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR     +G +       ++                T   E    + +    LT RE   
Sbjct: 114 VRRVADGDGVLAPEVTRRVIRALAAAAPASTTPPASTPPSEPEPAKVTRVAGLTPRERDV 173

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           L   G G T+++IA +L +S  T   ++    +KL   +R+QA   A   G
Sbjct: 174 LAALGRGLTNQQIATELFVSAATAKTHVSRVLMKLGVTSRVQAALVARDAG 224


>gi|215402638|ref|ZP_03414819.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis 02_1987]
 gi|289744570|ref|ZP_06503948.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis 02_1987]
 gi|289685098|gb|EFD52586.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis 02_1987]
          Length = 216

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 13/160 (8%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL---------GFHKNGYVIFTSEF 138
               +          Q++  +    LP   +                    G+++  S  
Sbjct: 56  DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR 115

Query: 139 LMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
             +   V+  A G       ++     E+ ++ +  A  L+ RE   L       +   I
Sbjct: 116 TEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACRQSIPAI 175

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A +  ++  TV  ++     KL   +R  A+A+A+R   +
Sbjct: 176 AAERYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215


>gi|114045946|ref|YP_736496.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113887388|gb|ABI41439.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 202

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               A  +   +    F+++S   +   LTERE   L     G T+++I+E + LS+ T+
Sbjct: 111 ALVQAIEKAHRESQANFEQQSLQHKFAQLTEREQQVLTHVIQGMTNKQISEAMYLSLRTI 170

Query: 206 NAYLGSATVKLDAVNRIQAI 225
             +      KL+  N  + +
Sbjct: 171 EVHRAKIMKKLEVSNMAELV 190


>gi|330895505|gb|EGH27816.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330981863|gb|EGH79966.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 77

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 41/76 (53%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            + +++   + S A+NLT+RE   L+ + +G T+ +IA  L L   T++ ++ SA  K+ 
Sbjct: 1   MNTMDMNFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60

Query: 218 AVNRIQAIAKAIRFGY 233
             N+  A  +A   G 
Sbjct: 61  VCNKTAAAVQAALSGM 76


>gi|330826405|ref|YP_004389708.1| LuxR family ATP-dependent transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|329311777|gb|AEB86192.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 911

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 29/185 (15%)

Query: 77  LFHFNSGLLPIIWQSIQ----------EETVIESSGQLSVRLEGGLLPFAG--------- 117
           L H N+ +    W +            E   +  S    + L    L  AG         
Sbjct: 725 LAHANTLIAAQDWSAAAEALANALPLVESAKLGRSRIEIMALRALALERAGRNGKPLLLE 784

Query: 118 ---IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSS 169
              +A    L           ++++    E     H    Q+      L ++     R+ 
Sbjct: 785 AMNLALTFSLSRTFVDAHPALADWVRRTAEEDGAGHRI--QIARTARPLPERAAGAPRAV 842

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            +  LT +E   L+      +++EIA+ + +   TV  +L +   KLDA  R   + +A 
Sbjct: 843 PSMVLTPKEREVLEHLARNLSNKEIAQAMEVGEETVKWHLKNLFGKLDAGTRKHVVRRAQ 902

Query: 230 RFGYI 234
             G +
Sbjct: 903 LLGLL 907


>gi|255745617|ref|ZP_05419565.1| BarA-associated response regulator UvrY [Vibrio cholera CIRS 101]
 gi|261210630|ref|ZP_05924922.1| BarA-associated response regulator UvrY [Vibrio sp. RC341]
 gi|262159108|ref|ZP_06030220.1| BarA-associated response regulator UvrY [Vibrio cholerae INDRE
           91/1]
 gi|262169466|ref|ZP_06037158.1| BarA-associated response regulator UvrY [Vibrio cholerae RC27]
 gi|262190260|ref|ZP_06048532.1| BarA-associated response regulator UvrY [Vibrio cholerae CT
           5369-93]
 gi|262402434|ref|ZP_06078995.1| BarA-associated response regulator UvrY [Vibrio sp. RC586]
 gi|255736692|gb|EET92089.1| BarA-associated response regulator UvrY [Vibrio cholera CIRS 101]
 gi|260840115|gb|EEX66695.1| BarA-associated response regulator UvrY [Vibrio sp. RC341]
 gi|262022279|gb|EEY40988.1| BarA-associated response regulator UvrY [Vibrio cholerae RC27]
 gi|262029293|gb|EEY47945.1| BarA-associated response regulator UvrY [Vibrio cholerae INDRE
           91/1]
 gi|262033855|gb|EEY52323.1| BarA-associated response regulator UvrY [Vibrio cholerae CT
           5369-93]
 gi|262351216|gb|EEZ00349.1| BarA-associated response regulator UvrY [Vibrio sp. RC586]
          Length = 188

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 107 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 166

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 167 INGDVELTHLAIRHGIL 183


>gi|302337063|ref|YP_003802269.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634248|gb|ADK79675.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 216

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 152 ACYQVITDFL-ELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              Q+    L EL K++S A     NLT RE   ++    GYT  EIA++  +S  TV  
Sbjct: 126 ISPQIARTLLGELRKEKSPADHVDYNLTPRELDVVKGIIAGYTYREIADRYNISGSTVKK 185

Query: 208 YLGSATVKLDAVNRIQ 223
           ++     KL+  +R++
Sbjct: 186 HILHIYKKLNVSSRVE 201


>gi|284028795|ref|YP_003378726.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808088|gb|ADB29927.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 200

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           E+  +       LT+RE   L+L  +GY+  +IA +L L+  TV  YL +A  K  A +R
Sbjct: 128 EVSARAVIDDNPLTDRELDALRLTSEGYSVADIATRLFLAEGTVRNYLSNAMRKTQAKSR 187

Query: 222 IQAIAKAIRFGYI 234
            +A   A    ++
Sbjct: 188 HEAARYAREHDWL 200


>gi|213966347|ref|ZP_03394528.1| regulatory protein, LuxR:Response regulator receiver
           [Corynebacterium amycolatum SK46]
 gi|213950996|gb|EEB62397.1| regulatory protein, LuxR:Response regulator receiver
           [Corynebacterium amycolatum SK46]
          Length = 217

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 38/75 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             ++    R+ ++  +T+ E   L L   G ++ +IA++LG S  T+  +L S   K  A
Sbjct: 134 RLIKTLPSRNISSYKITQAEREVLGLICRGKSNHDIAKELGKSPGTIKKHLSSMFNKFGA 193

Query: 219 VNRIQAIAKAIRFGY 233
            +R+    KAI  G+
Sbjct: 194 TSRLDLALKAIDAGF 208


>gi|163803038|ref|ZP_02196924.1| response regulator [Vibrio sp. AND4]
 gi|159173212|gb|EDP58041.1| response regulator [Vibrio sp. AND4]
          Length = 214

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  ++L+ERE   + +   G    +I+++L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSPASENPFKDLSERELQIMMMITKGQKVTDISDQLNLSPKTVNSYRYRLFSKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGML 209


>gi|186471227|ref|YP_001862545.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197536|gb|ACC75499.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 213

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 44/114 (38%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G             ++ A   ++E      + ++  L            LT R
Sbjct: 96  VTQAVRAGASGYVLKDSPGAEIIRAIGAVLEGKTFFSEGLSARLIHASATRDPIERLTPR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L     G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 156 ERDILDQLAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 209


>gi|26988367|ref|NP_743792.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida KT2440]
 gi|148549288|ref|YP_001269390.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|24983119|gb|AAN67256.1|AE016352_9 DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|148513346|gb|ABQ80206.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
 gi|313500198|gb|ADR61564.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 216

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R QA     + 
Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210


>gi|330808400|ref|YP_004352862.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376508|gb|AEA67858.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 219

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             AH    Q +T   +  +   + A NLT R+   L+L   G ++ EIA  L LS+ TV 
Sbjct: 129 AIAHTVINQALTRVQK-HQSDPARAHNLTARQLEILRLIVRGKSTREIANGLNLSIKTVE 187

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +      +L   +    +  A+R   I
Sbjct: 188 THRAQIMKRLQIHDVAGLVLFAVREQII 215


>gi|298242216|ref|ZP_06966023.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297555270|gb|EFH89134.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 768

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K ++++   L ERE   L+    G + ++IA++L LS +T+  Y      KL   +R Q
Sbjct: 1   MKGKATSPDLLNEREQEILKRLSTGLSDQQIADELFLSPNTIKWYNRQIYSKLGVKSRTQ 60

Query: 224 AIAKAIRFGYI 234
           AIA     G +
Sbjct: 61  AIACVKDLGLL 71


>gi|298250549|ref|ZP_06974353.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548553|gb|EFH82420.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1080

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 169  SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                 LT +E   L+L   G ++ EIA +L +SV+T+ + + S   KL   NR  A   A
Sbjct: 1015 PLYEPLTSQEQRVLRLLATGRSNPEIARELIVSVNTIRSQVQSIYRKLQVNNRHAASELA 1074

Query: 229  IRFGYI 234
             +   +
Sbjct: 1075 RKLHLL 1080


>gi|228997588|ref|ZP_04157200.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228762140|gb|EEM11074.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 201

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L++  +G T+ EI + L L+  TV  YL S+  KL+A +R QAI  A   G
Sbjct: 140 PLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKG 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|253699734|ref|YP_003020923.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251774584|gb|ACT17165.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 215

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   + L   G +S  ++E+L +SV TV A+      KL           A+R G+
Sbjct: 152 LTPREHDIMVLLAQGKSSRAVSEQLLISVKTVEAHRAHIMKKLGLSGMAALAKYALRAGF 211

Query: 234 I 234
           I
Sbjct: 212 I 212


>gi|188582813|ref|YP_001926258.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346311|gb|ACB81723.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 301

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 14/129 (10%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI-------TDFLELFKKRSS 169
           G + P+ L      ++         A   + +  G  + +           L L    ++
Sbjct: 168 GSSEPLALPPSGREWLQRCLSGHGTAPLALTDGQGRAHSLSFIGRTGPEILLRLSGDPTA 227

Query: 170 AA-----RNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           A        L  T RE   L     G +S +I E LGLS  TV  +L     KL   NR 
Sbjct: 228 AGLERLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRT 287

Query: 223 QAIAKAIRF 231
            A A A R 
Sbjct: 288 AASAVAARH 296


>gi|56681815|gb|AAW21508.1| nitrate/nitrite regulatory protein [Methylophaga
           aminisulfidivorans]
          Length = 226

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173
           L +  NGY+   +    + ++++   HG       A   + +   E     ++ +     
Sbjct: 98  LRYGANGYLQKDTPPDEILSQLMSVLHGNVAMNAGAVTSLASHLRENKDDENNPSSAILS 157

Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +TERE   L     G  ++ IA +LG+S  TV  Y+ S   K++  +R++  A A R 
Sbjct: 158 HMTERERETLFYIAKGLNNKLIARELGISDGTVKVYVKSLLRKVNLHSRLELAAWAHRN 216


>gi|158312386|ref|YP_001504894.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158107791|gb|ABW09988.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 201

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 39/72 (54%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
             +  ++    LT RE   L+LA  G   EEIA +L LS  TV  YL SA  KL AVNR 
Sbjct: 130 AAEAIAAGDSPLTPREAEVLELAAGGAPVEEIAARLSLSRGTVRNYLSSAVAKLGAVNRH 189

Query: 223 QAIAKAIRFGYI 234
           +A+  A   G+I
Sbjct: 190 EAVQLARVRGWI 201


>gi|226945892|ref|YP_002800965.1| Response regulator, LuxR family [Azotobacter vinelandii DJ]
 gi|226720819|gb|ACO79990.1| Response regulator, LuxR family [Azotobacter vinelandii DJ]
          Length = 215

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  DG  +++IA +L +S  TV A++ +   KL    R Q
Sbjct: 143 AKAASAGLASLTPQQFRVLSMVCDGLLNKQIAYELNVSEATVKAHVTAIFRKLGVRTRTQ 202

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 203 AALLLQQL 210


>gi|327479056|gb|AEA82366.1| DNA-binding response regulator CorR [Pseudomonas stutzeri DSM 4166]
          Length = 194

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              ++ + +  +LT RE   L LAG G ++ EIAE+L LS HT+ +++ +   K+ A NR
Sbjct: 116 RRMRQLAESKTSLTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNR 175

Query: 222 IQAI 225
            +A 
Sbjct: 176 AEAA 179


>gi|326388234|ref|ZP_08209837.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207400|gb|EGD58214.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 194

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVI 157
                S+ +         I     L     G++  +     ++ A   ++E       ++
Sbjct: 55  RDSFPSIPVVMVSGALDRITVREALAAGAAGFIPKSLKRAEIVEALRQVLEGEIYIPNIL 114

Query: 158 TDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
            +  E  ++R+   +    LT ++   L+   +G  +++IA +L +S+ TV A++ +   
Sbjct: 115 EEDNEDARERASILARIEALTPQQKVVLRHLVNGKLNKQIAFELDVSMTTVKAHVSAILQ 174

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           KL+A +R QA+  A R G+
Sbjct: 175 KLNAYSRTQAVILANRVGF 193


>gi|313498513|gb|ADR59879.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           BIRD-1]
          Length = 210

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 120 FPVRLGFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
            P+ +   K G   F     ++ L+L +      H    +     L L + R      LT
Sbjct: 87  VPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALEHAGLARQGDQALALVQAR---IDGLT 143

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            RE         G  + EIAE+LG+SV TV+ Y G    +L A +  + +  AI  G
Sbjct: 144 PRERDVFVPLAQGLNNREIAEQLGISVKTVDLYRGRVMKRLQASSLAELVGMAIACG 200


>gi|308049926|ref|YP_003913492.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632116|gb|ADN76418.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 213

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                L+ F    +   +L+ERE     +   G    EI+E+L LS  TVN+Y      K
Sbjct: 130 AQQMALKPFNPEKNPFDDLSERELQITMMVTSGQKVSEISEQLNLSPKTVNSYRYRLFEK 189

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L     ++    AIR+G +
Sbjct: 190 LKISGDVELTRLAIRYGMV 208


>gi|260204619|ref|ZP_05772110.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            K85]
 gi|289574024|ref|ZP_06454251.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289538455|gb|EFD43033.1| transcriptional regulator [Mycobacterium tuberculosis K85]
          Length = 1159

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1150 LVQEAAQH 1157


>gi|257882181|ref|ZP_05661834.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|294621968|ref|ZP_06701113.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|257817839|gb|EEV45167.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|291598447|gb|EFF29519.1| DNA-binding response regulator [Enterococcus faecium U0317]
          Length = 197

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + +ERE + ++    G  ++EIA+ L LS  TV  Y+     KLD  +R Q      + 
Sbjct: 137 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 195


>gi|238064295|ref|ZP_04609004.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
 gi|237886106|gb|EEP74934.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
          Length = 498

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
            +  E V       +       L   G +  +R            +    L       A 
Sbjct: 357 ELLAEAVAVLRTSPARLELAEALHAYGRSVRLRHP-----GAALAASTEALEIARACGAE 411

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G   +V  +  E           LT  E    +LA  G T+ +IA++L ++  TV  +L 
Sbjct: 412 GLARRVAAELAESATPAEPPHGALTAGEWRVARLALSGRTNHQIAQELHVTPKTVETHLS 471

Query: 211 SATVKLDAVNRIQAIAK 227
           S   KL   NR      
Sbjct: 472 SVYRKLGVRNRTAMARL 488


>gi|254521736|ref|ZP_05133791.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219719327|gb|EED37852.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 221

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R LT ++   LQ+ G G  +++IA  L +S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|269977244|ref|ZP_06184217.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1]
 gi|269934547|gb|EEZ91108.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1]
          Length = 189

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K ++  + LT  E    Q    G  + +IA+ L     T+  ++ S   K    +R +
Sbjct: 117 DPKYTAGKQALTPAERDVWQEVLKGKGNAQIAKTLHSQESTIKTHMTSIMQKFQVRSRAE 176

Query: 224 AIAKAIRFGYI 234
            +  + + G I
Sbjct: 177 LLVFSAKNGAI 187


>gi|260186297|ref|ZP_05763771.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CPHL_A]
 gi|289446953|ref|ZP_06436697.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289419911|gb|EFD17112.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
          Length = 1159

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1150 LVQEAAQH 1157


>gi|229014836|ref|ZP_04171934.1| Response regulator [Bacillus mycoides DSM 2048]
 gi|228746456|gb|EEL96361.1| Response regulator [Bacillus mycoides DSM 2048]
          Length = 290

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+    G   + IA KL LS  T+  Y  +   KL   NR +AI +A +  
Sbjct: 229 GLTKREMEILEHLSGGLRYKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAIKRARKEN 288

Query: 233 YI 234
            +
Sbjct: 289 IV 290


>gi|107102108|ref|ZP_01366026.1| hypothetical protein PaerPA_01003157 [Pseudomonas aeruginosa PACS2]
          Length = 211

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172
           FP RL      GY+   +  E ++ A   +          I   L L     ++  S   
Sbjct: 86  FPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFD 145

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ERE     +  + +  + I++KL LS  TVN Y      KL   + ++    A+R G
Sbjct: 146 SLSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHG 205

Query: 233 YI 234
            +
Sbjct: 206 MV 207


>gi|300787344|ref|YP_003767635.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796858|gb|ADJ47233.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 196

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              + +     +L+++E   L+L G+G T+ +I+E++ L+  TV  Y+     KL    R
Sbjct: 122 RDSQAKKGPLADLSDQEKKLLELIGEGLTNRQISERMFLAEKTVKNYVSRLLTKLGMERR 181

Query: 222 IQAIAKAIRF 231
            QA   A   
Sbjct: 182 TQAAVLATEL 191


>gi|302547687|ref|ZP_07300029.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465305|gb|EFL28398.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 235

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            + +    LT+RE   ++    G T+EE+A  L +++ TV  +LG+   KL A NR++  
Sbjct: 162 GQDALTEPLTQRELDVVRRVARGRTNEEVAADLYVTLSTVKTHLGNVQRKLAARNRVEIA 221

Query: 226 AKAIRFGYIC 235
           A A   G IC
Sbjct: 222 AWAWENG-IC 230


>gi|240173027|ref|ZP_04751685.1| regulatory protein, LuxR [Mycobacterium kansasii ATCC 12478]
          Length = 1097

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%)

Query: 153  CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                +       K+ +S   +LT  E   ++L  DG  + EIA +L +S  TV  +L   
Sbjct: 1018 AIAYVRRGRGERKRPASGWASLTPTERDVVRLVADGLANNEIAARLFISRRTVQTHLTHV 1077

Query: 213  TVKLDAVNRIQAIAKAIRFG 232
              KL   +R+Q   +    G
Sbjct: 1078 YAKLGINSRVQLAHEGASRG 1097


>gi|218660891|ref|ZP_03516821.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 65

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   +     G T+ EI   LG+S  TVN ++ +A  KL        +A A+R G I
Sbjct: 5   TPREREIIGCMAAGKTAAEIGAILGISPITVNTHISNAKAKLGVFKETALVAAALRNGII 64


>gi|121608885|ref|YP_996692.1| response regulator receiver protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553525|gb|ABM57674.1| two component transcriptional regulator, LuxR family
           [Verminephrobacter eiseniae EF01-2]
          Length = 208

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 148 EAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           E  G   +++    E F        R +    LT RE   L+    G  +++IA+ LG+S
Sbjct: 114 ELVGLVERMLDHAREAFADYQQAVCREALLSKLTSREAQVLERIVAGRLNKQIADDLGIS 173

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           + TV A+  +   KL+A      +  A+
Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIAL 201


>gi|26990794|ref|NP_746219.1| DNA-binding response regulator GacA [Pseudomonas putida KT2440]
 gi|148547003|ref|YP_001267105.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|325277352|ref|ZP_08142977.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|24985798|gb|AAN69683.1|AE016604_5 DNA-binding response regulator GacA [Pseudomonas putida KT2440]
 gi|148511061|gb|ABQ77921.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
 gi|324097542|gb|EGB95763.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 212

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGACYQVITDF-LELFKKRSSAARNL 174
           FP RL        +     L    + I  A         Q+     L+ F+ + S    L
Sbjct: 89  FPTRLLQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLALKPFQPQGSPFDAL 148

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +ERE     +       + I++KL LS  TVN Y      KL   + ++    A+R G +
Sbjct: 149 SEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 208


>gi|330817674|ref|YP_004361379.1| two component LuxR family transcriptional regulator [Burkholderia
           gladioli BSR3]
 gi|327370067|gb|AEA61423.1| two component LuxR family transcriptional regulator [Burkholderia
           gladioli BSR3]
          Length = 212

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
            P+ +   K G + F  E      E+         +   +   + ++R++      LT R
Sbjct: 97  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARNESKSVQEQRAASERLSKLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|309812054|ref|ZP_07705815.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
 gi|308433986|gb|EFP57857.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
          Length = 204

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 7/110 (6%)

Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
             G+   V     +                       A    +        +       L
Sbjct: 69  VHGVLAEVPTPLDEAALARMLRADEPYVAPERAAQVWAVACALA-------RAPHPTYAL 121

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE   L L   G ++  IA  L LS +TV  +L      L   +R +A
Sbjct: 122 SAREREVLDLVARGRSNRSIAATLFLSENTVRNHLARIYRTLGVSSRAEA 171


>gi|256823996|ref|YP_003147956.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687389|gb|ACV05191.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 201

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCL 182
                G   F  +        ++EA       +         +   +    L+ RET  L
Sbjct: 92  RALDAGASGFVVKDCPPT--ELLEAVRRTAAGLRTVDADLAAESALAGPNPLSPRETDVL 149

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +LA DG    EIA  L LS  TV  +L SA  K  A     A   A   G++
Sbjct: 150 RLAADGQGVAEIAGALFLSPGTVRNHLSSAIGKTGARTSAGAATTARDNGWL 201


>gi|227820767|ref|YP_002824737.1| predicted two-component transcriptional regulator, LuxR family
           [Sinorhizobium fredii NGR234]
 gi|227339766|gb|ACP23984.1| predicted two-component transcriptional regulator, LuxR family
           [Sinorhizobium fredii NGR234]
          Length = 215

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 38/63 (60%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + LT +++  L +  +G  +++IA +LG+S  T+ A++ +  +KL+  +R QA+ +  
Sbjct: 148 RLQTLTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLS 207

Query: 230 RFG 232
           + G
Sbjct: 208 KLG 210


>gi|72162179|ref|YP_289836.1| regulatory protein LuxR [Thermobifida fusca YX]
 gi|71915911|gb|AAZ55813.1| regulatory protein, LuxR [Thermobifida fusca YX]
          Length = 917

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
           R+  G L              +     FT     L  +   E   A  + + D       
Sbjct: 800 RMAYGTLLRRSRLPSAARPHLRAAVEAFTRLETPLLLQQAKEQLRATGEALDDT------ 853

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
             +    LT ++    +L  +G T+ EIA++L +S  TV  +L +   +L   +R++   
Sbjct: 854 -PAPTAGLTPQQEQIARLVAEGATNREIAQRLYISPRTVEHHLRNIFRQLQIRSRVELAR 912

Query: 227 K 227
            
Sbjct: 913 L 913


>gi|77404773|ref|YP_345346.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides 2.4.1]
 gi|77390423|gb|ABA81605.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 240

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            LT RE   L L G G T++EIA+KLGL+  T+  ++ +  +K +A NR Q   
Sbjct: 140 RLTRREREVLNLIGAGKTNKEIAQKLGLAEVTIKMHVRALCLKFEARNRTQLAV 193


>gi|332142261|ref|YP_004427999.1| two-component response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552283|gb|AEA99001.1| two-component response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 298

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +T+RE+  L     G TS EI++ L +S  T N +L     KL   N+  A A A+R 
Sbjct: 236 PITKRESEVLYWISFGKTSWEISQILDMSPRTANKHLEQIYKKLGVDNKTSAAAIALRL 294


>gi|261404981|ref|YP_003241222.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. Y412MC10]
 gi|261281444|gb|ACX63415.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. Y412MC10]
          Length = 865

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 35/70 (50%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L          LT +ET+ L L   G T++ IA++LGL+V TV  YL     KL 
Sbjct: 785 EKLASLDLLDHFGTYGLTPQETTVLALLHRGDTNQSIADELGLTVGTVKVYLNRIYSKLG 844

Query: 218 AVNRIQAIAK 227
             +R+QA+ K
Sbjct: 845 VSSRVQAVLK 854


>gi|114706302|ref|ZP_01439204.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506]
 gi|114538163|gb|EAU41285.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506]
          Length = 205

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
                 +  +   +  + ++    A  ++   +L+L     +A   LT RE   L +   
Sbjct: 102 GTYGFCYQFDDPEVLFDTLLAV--ANGRICIPYLDLTLVNDTAISKLTVRERELLSMLAL 159

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           G+T+ +IA + G+S +TV  YL +   KLD  NR  A+A
Sbjct: 160 GWTNVQIAARTGISQNTVKYYLKNLYEKLDVQNRAMAVA 198


>gi|320322570|gb|EFW78663.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330177|gb|EFW86163.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875366|gb|EGH09515.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330987495|gb|EGH85598.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 209

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L    S A  +LT R+   L L   G T++EIA  LG+S  TV  ++ S    L    R 
Sbjct: 136 LSDLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVSTRS 195

Query: 223 QAIA 226
            A A
Sbjct: 196 AAAA 199


>gi|312200760|ref|YP_004020821.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311232096|gb|ADP84951.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 338

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 36/78 (46%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           HG    V+   L   K+ S   + LT RE    +L  +G T+  IA +L L+  TV  ++
Sbjct: 251 HGDWQAVLDAVLAFLKQPSRGGQRLTARELEVAELVTEGLTNHAIAGRLSLAPRTVETHV 310

Query: 210 GSATVKLDAVNRIQAIAK 227
            +   KL   +R Q  A 
Sbjct: 311 ENIRRKLQVSSRAQIAAW 328


>gi|222080969|ref|YP_002540332.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725648|gb|ACM28737.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 213

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTE 176
            P+ +   K G + F  +     ++ +++A      +  +     +  S   +    LT 
Sbjct: 91  VPMSVRAMKAGALDFLIK--PFRDQDMLDAVSNALALDRERRATKETMSVWKARYETLTA 148

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           RE   + +   G  +++IA  LG+S  TV  + G    K+      + +  
Sbjct: 149 REREVIAMVTSGLMNKQIAGMLGVSEITVKLHRGHLMEKMGVRTLAELVKI 199


>gi|167836939|ref|ZP_02463822.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 210

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 53/184 (28%), Gaps = 14/184 (7%)

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGLLPFAGIAFP 121
              ++    D           P            + +     +   +  G      I   
Sbjct: 27  DVSIVGEAHDPAGLLALLATTPCDIVITDFAMPDQRAADGLAMLTAIRDGHPSVRVIVLT 86

Query: 122 VRLGFHKNGYVIFTSEFLML----ANEVIIEAHGACYQ-------VITDFLELFKKRSSA 170
           +         +       +L      + +  A GA  Q              L  + + A
Sbjct: 87  MLDNPVLMHTMRQAGALAVLSKRGDLDELPRAVGAVCQGRPFVGTHAGAASGLAMRATDA 146

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              L+ RE   ++L   G T  +IA + G S+ TV+ +  +A  KL   + +     A  
Sbjct: 147 PPQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 206

Query: 231 FGYI 234
            G +
Sbjct: 207 NGLV 210


>gi|153832829|ref|ZP_01985496.1| transcriptional regulatory protein UhpA [Vibrio harveyi HY01]
 gi|148870963|gb|EDL69853.1| transcriptional regulatory protein UhpA [Vibrio harveyi HY01]
          Length = 202

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L     +++    LT RE    QL   G   + IA +LGLS  TV+ +  +A  KL   N
Sbjct: 130 LATPSDKAATLTQLTRRENEVCQLLARGLDVKSIATELGLSHKTVHVHRANAIDKLGVKN 189

Query: 221 RIQAIAK 227
            ++    
Sbjct: 190 NVELAKL 196


>gi|17549072|ref|NP_522412.1| transcription regulator PRHJ transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|3688537|emb|CAA07191.1| PrhJ [Ralstonia solanacearum]
 gi|17431323|emb|CAD18002.1| transcription regulator prhj transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|219566941|dbj|BAH04972.1| transcription regulator [Ralstonia solanacearum]
          Length = 174

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +    + + +   L  E      G          E      +    LT R+   L+ A  
Sbjct: 61  EAVGELPSGQLQPLTLEQTYAMLGRILDARRHGPEPRPDGGARLSALTPRQHDILREAAH 120

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G ++ EIA+ L +SV TV +++    ++LDA NR +  A 
Sbjct: 121 GKSNVEIAQTLHISVETVKSHVRQILMRLDARNRTELAAI 160


>gi|121606652|ref|YP_983981.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595621|gb|ABM39060.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 232

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             A  L+ RE   L L   G +++ IA KL ++  TV  ++     KL   +R+QA   A
Sbjct: 167 PGAGLLSARERDVLGLIALGDSNKLIARKLDIAETTVKIHVQHILRKLQLTSRVQAAVYA 226

Query: 229 IRFGY 233
                
Sbjct: 227 ANREL 231


>gi|329923008|ref|ZP_08278524.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941781|gb|EGG38066.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 202

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 46/115 (40%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178
           +  + L     GY++ +++   +A ++   A G+          L         +LT RE
Sbjct: 88  SIRLALLAGAEGYMLKSTQVSSMAQQLRALASGSSVVDANVLKTLMLPEKENRADLTPRE 147

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              L L   G ++ EIAE+L +S  TV   L     KL+  +R Q      R   
Sbjct: 148 NDILGLVALGCSNREIAEQLFISEGTVRNTLSIILDKLELRDRTQLAIYYWRQSL 202


>gi|327540029|gb|EGF26625.1| protein containing Transcription regulator LuxR domain
           [Rhodopirellula baltica WH47]
          Length = 473

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFLELFKKRSSAARNL 174
             +        +++ T   L   ++  I            + +    +L  +  +  + L
Sbjct: 351 VRLTHKDGHLVWLLLTCSSLFNDSDQFIGIQVRAVDITHRKHVETLTKLAAEAKAKLKRL 410

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T RE   L+   +G  ++ IA +L +S  TV  +  +   KLDA +  + +  
Sbjct: 411 TIRERQVLEQIVEGRMNKVIANRLEISEKTVERHRSNLMKKLDAQSVAELVKL 463


>gi|312141833|ref|YP_004009169.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311891172|emb|CBH50491.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 866

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSC 181
            ++ G +   +         +  A     + +   L    +    A      LTERE + 
Sbjct: 753 ANRTGLLGMLATVPRALLTDLDAAARTPSKAVAALLATDAREVYPAAVHHVELTERERAV 812

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L     G ++ EIA  L +S +TV + L +   K+DA +R +A+  A R G I
Sbjct: 813 LAELARGLSTLEIARTLFVSTNTVKSQLRTLYRKIDAHSRDEALEIAYRTGLI 865


>gi|298383718|ref|ZP_06993279.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298263322|gb|EFI06185.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 257

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L+    G +S+EIA  L +SV+TVN +  +   KL   N I+A   A     
Sbjct: 197 LSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256

Query: 234 I 234
           +
Sbjct: 257 L 257


>gi|297156369|gb|ADI06081.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 280

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 17/140 (12%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
           +   E+   L   +         +A  V     +   +         ++    +      
Sbjct: 157 QAQPEADPALWEEVREAHGDLRALAQQVTDPQLRERILSACGRLAKASSGGTADTAAR-- 214

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                              L+ RE   L     G T+   A++LGL   TV +YL S+  
Sbjct: 215 ---------------PGVELSPREVDVLACVASGATNSAAADRLGLRPETVKSYLRSSMR 259

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           KL A  R+ A+ +A R G +
Sbjct: 260 KLGAHTRLHAVVEARRAGLL 279


>gi|312137865|ref|YP_004005201.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325673369|ref|ZP_08153061.1| response regulator [Rhodococcus equi ATCC 33707]
 gi|311887204|emb|CBH46513.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325555959|gb|EGD25629.1| response regulator [Rhodococcus equi ATCC 33707]
          Length = 212

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAAR 172
           +    L     GY++  ++   +   +   A+G      A        +   + RSS  R
Sbjct: 90  SLLASLRAGARGYLVKGADPAEVERAIRAVANGDMIVGAAVAAKAMTAVAAPRARSSVFR 149

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LTERE   L L   G+ +  I+ +L LS  TV  ++ +   KL   +R  AI +A   G
Sbjct: 150 ELTEREHEVLDLIARGHDNATISRRLVLSPKTVRNHVSNVLTKLGVPDRSTAIVRAREAG 209

Query: 233 Y 233
            
Sbjct: 210 M 210


>gi|260768673|ref|ZP_05877607.1| BarA-associated response regulator UvrY [Vibrio furnissii CIP
           102972]
 gi|260616703|gb|EEX41888.1| BarA-associated response regulator UvrY [Vibrio furnissii CIP
           102972]
 gi|315180374|gb|ADT87288.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC
           11218]
          Length = 188

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 107 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFAKLD 166

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 167 ISGDVELTHLAIRHGML 183


>gi|256376535|ref|YP_003100195.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920838|gb|ACU36349.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 221

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                  +    L  RE         G ++EE+A +L LS+ TV  YL     K+   +R
Sbjct: 142 AARPGGPTPFDVLGVREREVAAGVARGLSNEEVAAELSLSLATVKTYLSRVFDKVGVRDR 201

Query: 222 IQAIAKAIRFGY 233
            Q +  A R G+
Sbjct: 202 TQLVVLAYRTGF 213


>gi|183980157|ref|YP_001848448.1| LuxR family transcriptional regulator [Mycobacterium marinum M]
 gi|183173483|gb|ACC38593.1| transcriptional regulatory protein (LuxR- family) [Mycobacterium
            marinum M]
          Length = 1117

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 173  NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LT  E   ++L  +G ++++IA ++ +S  TV  +L     KL   +RIQ + +  R 
Sbjct: 1058 SLTPTEHDVVRLVQEGLSNKDIAARMFISPRTVQTHLTHVYTKLGLTSRIQLVHEVARH 1116


>gi|160900247|ref|YP_001565829.1| ATP-dependent transcription regulator LuxR [Delftia acidovorans
           SPH-1]
 gi|160365831|gb|ABX37444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Delftia acidovorans SPH-1]
          Length = 924

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             ++ A  LT +E   L+L   GY++  +AEKL +S  TV  +L S  +KL A +R QA+
Sbjct: 855 PATALAEPLTRKELRVLELLASGYSNAAMAEKLFVSDSTVRTHLRSINLKLGARSRTQAV 914

Query: 226 AKAIRF 231
           A A   
Sbjct: 915 ALAREL 920


>gi|326776576|ref|ZP_08235841.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656909|gb|EGE41755.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 220

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +    LT RE   L   G+G ++ EIA +L ++  TV  ++     KL+  +R+QA   
Sbjct: 151 PAVLDALTRREREVLGCLGEGLSNAEIALRLSMAEATVKTHVSRVLGKLELRSRVQAAVL 210

Query: 228 AIRFGY 233
           A   G 
Sbjct: 211 AQELGI 216


>gi|256258754|ref|ZP_05464290.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297247587|ref|ZP_06931305.1| monoamine regulon transcriptional regulator [Brucella abortus bv. 5
           str. B3196]
 gi|297174756|gb|EFH34103.1| monoamine regulon transcriptional regulator [Brucella abortus bv. 5
           str. B3196]
          Length = 245

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 177 GELLTAREVEVVHAIRLGLSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229


>gi|66047505|ref|YP_237346.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|289675883|ref|ZP_06496773.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
 gi|302188577|ref|ZP_07265250.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
 gi|63258212|gb|AAY39308.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|330938127|gb|EGH41849.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952935|gb|EGH53195.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
 gi|330969528|gb|EGH69594.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 77

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 41/76 (53%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            + +++   + S A+NLT+RE   L+ + +G T+ +IA  L L   T++ ++ SA  K+ 
Sbjct: 1   MNTMDINFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60

Query: 218 AVNRIQAIAKAIRFGY 233
             N+  A  +A   G 
Sbjct: 61  VCNKTAAAVQAALSGM 76


>gi|34497778|ref|NP_901993.1| LuxR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34103634|gb|AAQ59995.1| probable transcriptional regulatory protein, LuxR family
           [Chromobacterium violaceum ATCC 12472]
          Length = 224

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            ++ RE   L+L  DG +S+EIA +L LS  T+  +  +   KL   +    +  
Sbjct: 143 RISGREREVLELVADGLSSKEIARELDLSPRTIEVHRANLFSKLGVDSLADLVRF 197


>gi|332829196|gb|EGK01860.1| hypothetical protein HMPREF9455_02008 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 292

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A+ L++RE   L+L   G  ++E+A+KL +S++TV ++  + T KL        I   + 
Sbjct: 222 AQALSQRELDVLRLVALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVSGLIFYCMT 281

Query: 231 FGYI 234
            GYI
Sbjct: 282 NGYI 285


>gi|284045835|ref|YP_003396175.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950056|gb|ADB52800.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 214

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 119 AFPVRL--GFHKNGYV--IFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---RSSAA 171
           +  V          ++    + + ++ A  V+ +      + + D L +  +      A 
Sbjct: 91  SVTVHRAISAGARAFLPKGSSGDEIVEAVSVVADGGSLLPRAVHDTLTMALRQRSEVPAG 150

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   L+LA DG T   IA+ L +   TV  +L     K    +R  A+A   R 
Sbjct: 151 PVLSTRELEVLRLASDGLTVSAIAQALIIGDATVKTHLQHIYDKFGVSDRAAAVAHGFRL 210

Query: 232 GYI 234
           G++
Sbjct: 211 GFL 213


>gi|296134693|ref|YP_003641935.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|295794815|gb|ADG29605.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 211

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 33/78 (42%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           + +++   +        L++RE        +G +  ++A++L +S  TV+ +      KL
Sbjct: 133 LANYMNEGEAAEEPHARLSDREMQVFMRLVEGKSVNQVADELHISCKTVSTHKTRLMHKL 192

Query: 217 DAVNRIQAIAKAIRFGYI 234
              N    +  A+  G +
Sbjct: 193 ALDNDADLVRYAMHQGIV 210


>gi|260842730|ref|YP_003220508.1| putative DNA-binding transcriptional regulator FimZ [Escherichia
           coli O103:H2 str. 12009]
 gi|257757877|dbj|BAI29374.1| predicted DNA-binding transcriptional regulator FimZ [Escherichia
           coli O103:H2 str. 12009]
          Length = 210

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EIA+ L LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 150 LSNREVTILRYLVSGLSNKEIADNLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|302543141|ref|ZP_07295483.1| putative response regulator [Streptomyces hygroscopicus ATCC 53653]
 gi|302460759|gb|EFL23852.1| putative response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 213

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  +G  + EIA KL  S  TV   +   T +LD  NR  A+A A+R G
Sbjct: 151 GLTPREIDVLRLVAEGMGTGEIASKLSYSERTVKNIMQGLTTRLDLRNRAHAVAYALREG 210

Query: 233 YI 234
           YI
Sbjct: 211 YI 212


>gi|255325408|ref|ZP_05366512.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
 gi|255297494|gb|EET76807.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
          Length = 219

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
            G            G V   ++   +    +       Y+      +L  +       +T
Sbjct: 101 HGFLLKDADPEVLAGAVRDVAKGESVLASQVTGPVLEAYRTALTRGQLSAQERQGLSLVT 160

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            RE   L L   G T+ EIA ++ ++  TV  ++ S   KL A +R+  +  A R G 
Sbjct: 161 RREMEVLSLIARGATNSEIAAEMVIAETTVKTHVSSLMSKLAARDRVALVLFAQRAGI 218


>gi|220912063|ref|YP_002487372.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219858941|gb|ACL39283.1| transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 845

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 3/152 (1%)

Query: 75  DFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
             +     GL    W    +   T  E++   ++      L  +G     R  + + G V
Sbjct: 689 PMVQEAARGLQG-RWAEAMLTLATSWEAADGDALMATAASLEESGFVNLAREAYARAGAV 747

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192
           +  +     + + + +     +++   F E     ++   +LT RE   ++LA  G T  
Sbjct: 748 LDQAGERRRSRQAVAQREKCDHELGERFREGRFIAAAPTVHLTRREQDIVELAVQGLTDR 807

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           EIA++L +SV TV  +L    VKL   +R + 
Sbjct: 808 EIAQRLMVSVRTVEGHLYRTYVKLGVRSRDEL 839


>gi|188534205|ref|YP_001908002.1| response regulator [Erwinia tasmaniensis Et1/99]
 gi|188029247|emb|CAO97124.1| Response regulator protein [Erwinia tasmaniensis Et1/99]
          Length = 219

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 33/69 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++  S    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 QRAESPFSCLSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|167621653|ref|YP_001672161.1| ATP-dependent transcription regulator LuxR [Caulobacter sp. K31]
 gi|167351776|gb|ABZ74502.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Caulobacter sp. K31]
          Length = 182

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT +E + +Q   +G+++ +IAEK  +S  TV  ++ +   KL   NR+QA+ KA + G 
Sbjct: 121 LTRKELAMIQRIKEGFSNRDIAEKHRISEDTVKWHIRNIFSKLQVKNRVQALLKAEQIGI 180

Query: 234 I 234
           +
Sbjct: 181 L 181


>gi|254249293|ref|ZP_04942613.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124875794|gb|EAY65784.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 247

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 32/74 (43%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                +    A+NL+ RE   ++L   G T  EIAEKL  S  T++     A  KL    
Sbjct: 151 AHSSARIVDQAQNLSSREIEVVRLYASGMTVNEIAEKLSRSKKTISTQKARAMQKLGVEK 210

Query: 221 RIQAIAKAIRFGYI 234
            I  +  A+  G +
Sbjct: 211 DIDLLRYAMEHGIV 224


>gi|15608498|ref|NP_215874.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv]
 gi|148661147|ref|YP_001282670.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|167969108|ref|ZP_02551385.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|215403206|ref|ZP_03415387.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            02_1987]
 gi|215411003|ref|ZP_03419811.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            94_M4241A]
 gi|215426686|ref|ZP_03424605.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            T92]
 gi|215430244|ref|ZP_03428163.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            EAS054]
 gi|215445540|ref|ZP_03432292.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            T85]
 gi|260200414|ref|ZP_05767905.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            T46]
 gi|289442801|ref|ZP_06432545.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289745110|ref|ZP_06504488.1| transcriptional regulatory protein [Mycobacterium tuberculosis
            02_1987]
 gi|289749914|ref|ZP_06509292.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289753440|ref|ZP_06512818.1| transcriptional regulatory protein [Mycobacterium tuberculosis
            EAS054]
 gi|289757463|ref|ZP_06516841.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|294994916|ref|ZP_06800607.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            210]
 gi|298524865|ref|ZP_07012274.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306784088|ref|ZP_07422410.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu003]
 gi|306803061|ref|ZP_07439729.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu008]
 gi|306971645|ref|ZP_07484306.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu010]
 gi|307079357|ref|ZP_07488527.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu011]
 gi|307083922|ref|ZP_07493035.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu012]
 gi|1419061|emb|CAA99963.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
            tuberculosis H37Rv]
 gi|148505299|gb|ABQ73108.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|289415720|gb|EFD12960.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289685638|gb|EFD53126.1| transcriptional regulatory protein [Mycobacterium tuberculosis
            02_1987]
 gi|289690501|gb|EFD57930.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289694027|gb|EFD61456.1| transcriptional regulatory protein [Mycobacterium tuberculosis
            EAS054]
 gi|289713027|gb|EFD77039.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|298494659|gb|EFI29953.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308331157|gb|EFP20008.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu003]
 gi|308350279|gb|EFP39130.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu008]
 gi|308358872|gb|EFP47723.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu010]
 gi|308362809|gb|EFP51660.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu011]
 gi|308366456|gb|EFP55307.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu012]
          Length = 1159

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1150 LVQEAAQH 1157


>gi|88798051|ref|ZP_01113638.1| Response regulator [Reinekea sp. MED297]
 gi|88779248|gb|EAR10436.1| Response regulator [Reinekea sp. MED297]
          Length = 200

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 45/114 (39%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
            V         +   ++  +  +        A   V+     +   R   +  LT R+  
Sbjct: 85  TVDHDASIQQMLRLGADCFIAKSSPRAVMIDALQSVVNGERVVISARRDESITLTPRQLE 144

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L+L   G  ++EIA ++ +S  TV  Y+    +  D  NR Q + KA + G+I
Sbjct: 145 TLELLALGLPNKEIASQMTISPATVREYVSDLLIAFDCDNRTQLVLKAHQLGFI 198


>gi|326902980|gb|EGE49913.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
          Length = 1158

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1089 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1148

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1149 LVQEAAQH 1156


>gi|294013481|ref|YP_003546941.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676811|dbj|BAI98329.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 222

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 163 LFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           L ++ + A      LT+R+   L+L   G ++++IA++L +S  TV  ++ +      A 
Sbjct: 147 LNERIALAVDKSKLLTKRQRDVLRLLAQGASNKDIAQRLNISESTVKVHVRAIMAVNGAS 206

Query: 220 NRIQAIAKAIRFG 232
           NR Q +A  ++ G
Sbjct: 207 NRTQIVAHLLKGG 219


>gi|238752716|ref|ZP_04614186.1| Response regulator uvrY [Yersinia rohdei ATCC 43380]
 gi|238709047|gb|EEQ01295.1| Response regulator uvrY [Yersinia rohdei ATCC 43380]
          Length = 166

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +L     +    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+
Sbjct: 81  MALGQLEPPTETPFSCLSERELQIMIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLN 140

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR G 
Sbjct: 141 ISGDVELTHLAIRHGM 156


>gi|256833722|ref|YP_003162449.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256687253|gb|ACV10146.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 230

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE    Q    G +++EI++ L +S+ TV  ++     K D  NR+Q    AIR 
Sbjct: 161 EQLTERELDVAQQIAQGKSNQEISQTLYMSIPTVKTHISRIFTKFDVDNRVQ---IAIRM 217


>gi|182413369|ref|YP_001818435.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840583|gb|ACB74835.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 229

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQVITDFLELFKKRSS-----AARNLT 175
           +R G           E L+ A  +V+        ++    L+    R           LT
Sbjct: 106 LRAGARGYIMKEAGGEALLAAIRQVLTGEVYVSPKMSARILDSLSGRKPRGSQSPIEKLT 165

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +RE    QL G G ++ +IA++L LS  TV+ + G    KL+  +    +  A+R
Sbjct: 166 DREFEVFQLIGQGKSTRDIAKQLHLSSKTVDVHRGHIKEKLELKDTTSLVRHAVR 220


>gi|315639869|ref|ZP_07895000.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484294|gb|EFU74759.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 211

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L            LT+RE   L L   GY+++EIA +L LSV T+  +  +   KL  
Sbjct: 134 SHLPHSDDEDQCYETLTKREKELLPLIALGYSNKEIASQLFLSVKTIEVHKTNIRKKLAI 193

Query: 219 VNRIQAIAKAIRFGYI 234
            +  + +   ++   I
Sbjct: 194 NHYPELLRYCVKHHLI 209


>gi|313499754|gb|ADR61120.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           BIRD-1]
          Length = 219

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              + VI   L   ++   +A    NLT R+   L+L   G ++ EIA  LGLS+ TV  
Sbjct: 129 AIAHTVINQALRHTQQGKPSADERHNLTSRQLEILRLIVRGKSTREIAGGLGLSIKTVET 188

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +      +L   +    +  A+R   I
Sbjct: 189 HRSQIMKRLQIHDVAGLVLFAVREKII 215


>gi|256397404|ref|YP_003118968.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
            44928]
 gi|256363630|gb|ACU77127.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM
            44928]
          Length = 1084

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 173  NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L L   G ++ +I E+L +S  T + ++ +   KL    R +A A A R 
Sbjct: 1020 GLTARELEVLALVAQGLSNRQIGERLFISTKTASVHVSNILAKLGVSGRGEAAAVAHRL 1078


>gi|227538925|ref|ZP_03968974.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300770449|ref|ZP_07080328.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
 gi|227241128|gb|EEI91143.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300762925|gb|EFK59742.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 211

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT+RE   LQ    G T+  IA++L LS  T+  +      K  A N    I  A+  
Sbjct: 149 PKLTKREKEILQHIALGKTTTTIADELFLSPLTIETHRKRMMSKFKAKNMAALIKTAMEH 208

Query: 232 GYI 234
             I
Sbjct: 209 NLI 211


>gi|254427699|ref|ZP_05041406.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196193868|gb|EDX88827.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 217

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   + +  + +  +++A+KL LS  TVN Y      KL   + ++    A+R 
Sbjct: 147 DMLSERELQIMMMIVNCHKVQDVADKLCLSPKTVNTYRYRIFDKLGVTSDVEMALLAVRH 206

Query: 232 GYI 234
           G +
Sbjct: 207 GML 209


>gi|154486623|ref|ZP_02028030.1| hypothetical protein BIFADO_00440 [Bifidobacterium adolescentis
           L2-32]
 gi|154084486|gb|EDN83531.1| hypothetical protein BIFADO_00440 [Bifidobacterium adolescentis
           L2-32]
          Length = 209

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +  L+ +E   +     G+T+  IA +L +S  +V  Y   A  KL A +R +A+A  +R
Sbjct: 146 SMRLSGKELQIIANYARGFTTSTIAHQLNISEASVKTYARRAFEKLHAHSRAEAVAMCVR 205

Query: 231 FGYI 234
            G+I
Sbjct: 206 NGWI 209


>gi|170723185|ref|YP_001750873.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169761188|gb|ACA74504.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 216

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R QA     + 
Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210


>gi|83646031|ref|YP_434466.1| LuxR family regulatory protein [Hahella chejuensis KCTC 2396]
 gi|83634074|gb|ABC30041.1| probable regulatory protein, luxR family [Hahella chejuensis KCTC
           2396]
          Length = 896

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+    L++RE   L L   G ++ EIA+ L  S+ TV  ++ +   KL A NR+ AI K
Sbjct: 831 SANLAALSKREKQVLDLLVTGMSNPEIADALCRSLGTVKIHVHNIYRKLGAANRVAAINK 890


>gi|15840814|ref|NP_335851.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CDC1551]
 gi|13881010|gb|AAK45665.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis
            CDC1551]
          Length = 1159

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1150 LVQEAAQH 1157


>gi|329907334|ref|ZP_08274644.1| two component transcriptional regulator, LuxR family protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546995|gb|EGF31889.1| two component transcriptional regulator, LuxR family protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 213

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 1/97 (1%)

Query: 139 LMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
           +                ++    EL  +        L++RE   ++L   G +  +IA  
Sbjct: 116 IDAVRTAAAGRKYVSPALVERLAELLGEGVRFPHEALSDRELEVMKLLASGDSLVQIAAT 175

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV  Y      K            AI  G I
Sbjct: 176 LHLSASTVTTYRARILEKTGLKGNTALSRYAIEHGLI 212


>gi|302521872|ref|ZP_07274214.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Streptomyces sp. SPB78]
 gi|302430767|gb|EFL02583.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Streptomyces sp. SPB78]
          Length = 274

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-----------HGACYQVITDFLELFKKRSSAAR 172
           L    +G+++  S +  L   V   A                  ++   +   +  +   
Sbjct: 154 LAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRIIEGHLSGRRQPSDQELARLG 213

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           +LTERE   L+L  DG ++ EIAE+L +S+HTV  ++    +K    +R QA   A 
Sbjct: 214 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 270


>gi|119961290|ref|YP_949663.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119948149|gb|ABM07060.1| putative transcriptional regulator, LuxR family [Arthrobacter
           aurescens TC1]
          Length = 878

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  A+ LT RE   L L     + E++A +L LSV+TV  ++     KL A +R  A+A 
Sbjct: 811 ARRAQALTPREREVLTLLPSHLSQEQMAAELHLSVNTVKTHVRIIYSKLGAGSRHDAVAA 870

Query: 228 AIRFGYI 234
           A + GY+
Sbjct: 871 AYKSGYL 877


>gi|170736604|ref|YP_001777864.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169818792|gb|ACA93374.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 241

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 32/74 (43%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
                +    A+NL+ RE   ++L   G T  EIAEKL  S  T++     A  KL    
Sbjct: 145 AHSSARIVDQAQNLSSREIEVVRLYASGMTVNEIAEKLSRSKKTISTQKARAMQKLGVEK 204

Query: 221 RIQAIAKAIRFGYI 234
            I  +  A+  G +
Sbjct: 205 DIDLLRYAMEHGIV 218


>gi|83647746|ref|YP_436181.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635789|gb|ABC31756.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 221

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           S     LT ++   L +  +G  +++IA  L +S  TV A++ +   KL   NR QA+ 
Sbjct: 146 SERLATLTPQQFRVLGMLTEGMLNKQIAYDLDVSEATVKAHITALFRKLGVRNRTQAVI 204


>gi|87309029|ref|ZP_01091167.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
 gi|87288372|gb|EAQ80268.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
          Length = 220

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            S     LT RE     + G G TS EIA +L LSVHTV+ +      K+ A +  + I 
Sbjct: 151 PSDPINRLTNREREIFTMIGHGQTSAEIASQLNLSVHTVDTHRERLCRKISAKSSAELIR 210

Query: 227 KAIR 230
           +A++
Sbjct: 211 RAMQ 214


>gi|332296369|ref|YP_004438292.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense
           DSM 14796]
 gi|332179472|gb|AEE15161.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense
           DSM 14796]
          Length = 459

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            LT RE   ++    G     IAE + +S +T   ++ +   K +  NR + I
Sbjct: 401 GLTPREKEIVKYILMGRNGRYIAEIMHISENTFKTHMRNIFRKCNVSNRQELI 453


>gi|332528810|ref|ZP_08404787.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332041876|gb|EGI78225.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 181

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%)

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           R+   L+L  DG T++EI   L LS  TV  ++ +         R QA+  A + GY
Sbjct: 110 RQEEVLRLLLDGLTNKEIGRLLDLSDETVKNHVSNILRCFGVATRTQAVLAARKHGY 166


>gi|330820816|ref|YP_004349678.1| putative metal dependent phosphohydrolase [Burkholderia gladioli
           BSR3]
 gi|327372811|gb|AEA64166.1| putative metal dependent phosphohydrolase [Burkholderia gladioli
           BSR3]
          Length = 481

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R  A   L+ RE   L+    G +++E A  L LS  TV  ++ S   KLD   R  A 
Sbjct: 413 PRRPATPLLSPREIEVLRQISGGLSNKEAARVLALSPSTVRTHVESIFRKLDCSTRAAAT 472

Query: 226 AKAIRFGYI 234
            KA+  G +
Sbjct: 473 LKALTTGLL 481


>gi|307327703|ref|ZP_07606887.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886601|gb|EFN17603.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 233

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L G+G  + +IAE++GL+  TV  ++ +   KL  +NR+QA   A R G 
Sbjct: 163 LTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGL 222

Query: 234 I 234
           +
Sbjct: 223 V 223


>gi|239988349|ref|ZP_04709013.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 224

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN-----LT 175
           L     G+++  S    L   V + A        +V+    +   K ++ A       LT
Sbjct: 97  LRAGAAGFLLKDSAVDELIPGVRLLAAGGSALSERVVRSLPDGAGKEAAPADPPGARLLT 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            RE   L+L   G ++EEI  +L LS  TV  ++ S   KL A NR+QA   A
Sbjct: 157 AREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIA 209


>gi|238027862|ref|YP_002912093.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237877056|gb|ACR29389.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 218

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNLTE 176
           +         +   +  ++   + + E   A  QV          +L     + A  LT 
Sbjct: 98  LNHPALAQRLLYLGAHAVVCKEDSLEELLAAVDQVAVQGSTYLSKQLRGTAPAPASALTP 157

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   L+  G G +  +I+ ++ ++V TV+ +  +A  KL+  + ++ I      G 
Sbjct: 158 RELEVLRHIGCGLSVVDISRRMFVTVSTVSTHKRNAMDKLNIRSTVELIQYIHAAGL 214


>gi|225872367|ref|YP_002753822.1| two-component system response regulator [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794530|gb|ACO34620.1| two-component system response regulator [Acidobacterium capsulatum
           ATCC 51196]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   LQL  +G +++E A  LG S  TV     +   KL   N    +  A+R 
Sbjct: 150 ERLTPREGEVLQLLAEGKSTKEAASVLGTSTFTVETQRKNVMRKLRLRNVSDLVRYAVRN 209

Query: 232 GYI 234
             I
Sbjct: 210 HMI 212


>gi|269864222|ref|XP_002651497.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
 gi|220064414|gb|EED42559.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
          Length = 206

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT R+     L   G T++EIA +L +S +TV  ++ S    L+  NR  A+A A   G
Sbjct: 145 KLTSRQREVWHLIAQGKTNKEIAAELEISPYTVRIHVSSLIRALNVPNR--AVAAARFAG 202


>gi|254231608|ref|ZP_04924935.1| hypothetical protein TBCG_01339 [Mycobacterium tuberculosis C]
 gi|124600667|gb|EAY59677.1| hypothetical protein TBCG_01339 [Mycobacterium tuberculosis C]
          Length = 1159

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1150 LVQEAAQH 1157


>gi|23094404|emb|CAD28140.1| putative LuxR-like transcriptional regulator [Rhodococcus opacus]
          Length = 413

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L  RE   L     G  ++ IA +LG+S  T+  ++ S   KLD  NR +A A  I+ G 
Sbjct: 345 LNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDVANRGEAGAIGIQAGI 404

Query: 234 I 234
           +
Sbjct: 405 V 405


>gi|253999066|ref|YP_003051129.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253985745|gb|ACT50602.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4]
          Length = 348

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 31/89 (34%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +        Q       L   R S    L+ RE    +     ++ +EIA + GLS  T
Sbjct: 236 QLPIGIYLNQQQAGGLTRLDIGRPSPLDKLSRREREVARGFAQAHSYKEIAVETGLSPAT 295

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V  YL     KL   ++ + +    R   
Sbjct: 296 VRHYLRGIYAKLAINDKAELVRLVTRHEL 324


>gi|239992553|ref|ZP_04713217.1| LuxR family transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 567

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
           +                      G  L  +G+         +       + +  +     
Sbjct: 430 VSAADAWTRLERPYEAAYVKEARGLHLLTSGV------PGGRTVLHQAIAAYEDIDAVWD 483

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +       +                 +L+ RE +  +LA  G ++ EIA +L LS  TV 
Sbjct: 484 VLRCQRELREHGQTTVRRPGALGYGDHLSPRERAVARLASLGLSNREIARELVLSHRTVE 543

Query: 207 AYLGSATVKLDAVNRIQ 223
            ++  A  KL   +R +
Sbjct: 544 HHVARALRKLGVSSRTE 560


>gi|258650584|ref|YP_003199740.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258553809|gb|ACV76751.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 524

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 33/70 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +R + A  LT RE   L LA  G +S +IA +L +S  T   +L     K    NR  A
Sbjct: 448 PRRRARATGLTAREEQVLALAAVGRSSRQIAAELTISEKTARNHLEHIYTKTGVSNRAGA 507

Query: 225 IAKAIRFGYI 234
              A++ G +
Sbjct: 508 SLFAVQHGIV 517


>gi|229821191|ref|YP_002882717.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567104|gb|ACQ80955.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 230

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L     G ++ EI   L +S  TV +++ S   KL   +R+Q +  A   G
Sbjct: 165 RLTRREHEVLLAVARGSSNREIGAALDVSEATVKSHVRSLLAKLGLASRVQLVIFAYSEG 224

Query: 233 YI 234
            +
Sbjct: 225 LV 226


>gi|220911420|ref|YP_002486729.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219858298|gb|ACL38640.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 208

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ--- 155
           +   R+ G     A + F            +            A E I  A     Q   
Sbjct: 67  EAIRRIRGLNSGQAILVFTTYDSDADIVRAVDAGAMGYLLKDAAPEEIFAAVRGAVQGRS 126

Query: 156 VITD--FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           V++      LF++  +    LT RE   L L   G ++ E+ ++L +S  TV  +L    
Sbjct: 127 VMSPPVASRLFQQLRNPEEVLTPREAELLSLLTQGLSNRELGQRLFISEATVKTHLAHIY 186

Query: 214 VKLDA 218
            KL  
Sbjct: 187 SKLGV 191


>gi|163851404|ref|YP_001639447.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
 gi|163663009|gb|ABY30376.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
          Length = 235

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%)

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153
                   G+  +R+          A    +    + +V + +    +   V+  A GA 
Sbjct: 74  ARIAALREGRPWLRVLAVFRTLDAPAMSRLITAGADAFVGYGTPADEVCASVLALAKGAP 133

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                    +          LT RE   L+    G++++E+A +L LSV TV  +  +  
Sbjct: 134 SAPSAASSSVCPPAEDPVIGLTPREAEVLRFLSAGFSNKEVARRLSLSVRTVETHRLNLR 193

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            K         +  A + G 
Sbjct: 194 RKTQTGRLKDLVTLARQLGL 213


>gi|144898192|emb|CAM75056.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 222

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +S     L+ RE   L +  DG  ++ IA    L   TV A+L +   K+   NR +A 
Sbjct: 148 GKSGPLAVLSAREMEILGMIVDGAPNKVIARAFELQEVTVKAHLRNIFRKIAVSNRTEAA 207

Query: 226 AKAIRFGY 233
             AI  G 
Sbjct: 208 RVAILAGL 215


>gi|86750181|ref|YP_486677.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86573209|gb|ABD07766.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 217

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTE 176
           ++  +  G         T   L  A   ++        ++       +  ++ +   L  
Sbjct: 95  VSQMIDAGASGLLLKTCTVNELETAIRDVLAGRIVLDPLLQKGAPRARTAAAESEITLGS 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++   L L   G+T+ EIAE+LG+S+ T   ++ +  VKL A NR +A   A+R   +
Sbjct: 155 QQKKVLALLVKGFTNSEIAERLGISLPTARYHVSAILVKLGASNRAEAAGLAVRLNIV 212


>gi|311067149|ref|YP_003972072.1| DNA-binding response regulator, luxR family protein [Bacillus
           atrophaeus 1942]
 gi|310867666|gb|ADP31141.1| DNA-binding response regulator, luxR family protein [Bacillus
           atrophaeus 1942]
          Length = 200

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT +E   L L  +  T+ EI+ +L +S  TV  Y+ S   K+ A +R+ A+   I+
Sbjct: 135 GERLTHKELEVLTLIAEDKTNMEISTELMISKRTVERYISSIIQKMKANSRVGAVVNGIK 194

Query: 231 FGYI 234
            G +
Sbjct: 195 QGLL 198


>gi|299135525|ref|ZP_07028709.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298601649|gb|EFI57803.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 207

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
           E         I    A  + +   L   +  S+    L+ERE   LQ AGDG +S EIA 
Sbjct: 111 ERPASELAEAIRRVHAGLRAVDPALA-AEAWSADEDPLSERERRILQRAGDGRSSAEIAA 169

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LS  TV  YL  A  KL A NR+ A   A   G++
Sbjct: 170 ELRLSEGTVRNYLSEAIAKLGAANRVDAARIARARGWL 207


>gi|158339159|ref|YP_001520336.1| TPR repeat-containing transcriptional regulator LuxR [Acaryochloris
           marina MBIC11017]
 gi|158309400|gb|ABW31017.1| transcriptional regulator, LuxR family with TPR repeats
           [Acaryochloris marina MBIC11017]
          Length = 910

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L++RE   L+L     +  EIA +L +S++T+  +  +   KL   NR  A+ +A  
Sbjct: 847 AEPLSDRELDVLKLLRTELSGPEIARELMVSLNTMRTHTKNIYSKLGVNNRRSAVKRAAE 906

Query: 231 FGYI 234
              +
Sbjct: 907 LELL 910


>gi|121637289|ref|YP_977512.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Pasteur 1173P2]
 gi|224989763|ref|YP_002644450.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
 gi|121492936|emb|CAL71407.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Pasteur 1173P2]
 gi|224772876|dbj|BAH25682.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
          Length = 1159

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1150 LVQEAAQH 1157


>gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 230

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 74/221 (33%), Gaps = 23/221 (10%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTIN---SALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           + +    L ++ + +    + +       SAL+   R++    L +  +   D       
Sbjct: 16  VDDTPDNLAMLSDALNDAGYMVLVALDGLSALNRIERRRPDLILLDAMMPGLDGFETCRR 75

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
                   H  +  +P+++ +   E+     G               +  P++       
Sbjct: 76  IK-----EHPANADIPVLFMTALTESRHVVQGFEV-------GGSDYVTKPIQTD----- 118

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDG 188
             +       L    I+ +  A  Q     L  E   +  SA   LT RE   L+    G
Sbjct: 119 -EVLARVAAHLRTSRILLSARAASQPAAPSLDDEPAHRVLSARFQLTGREVEVLRWVACG 177

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            T+ +I   L LS  TVN +L    VKL    R  A + A+
Sbjct: 178 KTNRDIGTILDLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218


>gi|324325252|gb|ADY20512.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 219

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 36/88 (40%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +       Q     L   +K +     LT+RE   L     G T++ IA  L LS  ++ 
Sbjct: 127 LFRQLRIQQFSAKSLLQSEKTNELPITLTQREREILIFVQQGMTNKNIALTLNLSQRSIE 186

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L     KL   +R++A+ KA   G +
Sbjct: 187 YTLTELFNKLRVSSRVEAVEKAKSLGIL 214


>gi|302544316|ref|ZP_07296658.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461934|gb|EFL25027.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 268

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             +      +++    +LT RE   L L G G  +  +AE+L +S  TV  ++     KL
Sbjct: 186 HRESARSTAEQTGRLESLTRREQEILTLMGQGLDNRAVAEQLSISYATVRTHVRKILEKL 245

Query: 217 DAVNRIQAIAKAIRFGY 233
           +  ++++A+AKA  +G+
Sbjct: 246 EVRSQLEAVAKATEWGF 262


>gi|188590891|ref|YP_001795491.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|170937785|emb|CAP62769.1| RESPONSE REGULATOR, LuxR family [Cupriavidus taiwanensis LMG 19424]
          Length = 210

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178
           +R G           + L+ A   + +        + D L     +       + L+ERE
Sbjct: 94  IRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGGLDKPTEQPVHQMLSERE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                    G +   IA++L LSV TV+ Y      K+           AI+ G +
Sbjct: 154 FQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209


>gi|167563059|ref|ZP_02355975.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 78

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  + + A   L+ RE   ++L   G T  +IA + G S+ TV+ +  +A  KL   + +
Sbjct: 7   LAMRAADAPPQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDV 66

Query: 223 QAIAKAIRFGYI 234
                A   G +
Sbjct: 67  DLFMYASENGLV 78


>gi|29347591|ref|NP_811094.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572052|ref|ZP_04849456.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|29339492|gb|AAO77288.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838232|gb|EES66319.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 257

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L+    G +S+EIA  L +SV+TVN +  +   KL   N I+A   A     
Sbjct: 197 LSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256

Query: 234 I 234
           +
Sbjct: 257 L 257


>gi|31792554|ref|NP_855047.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|31618143|emb|CAD94254.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
            AF2122/97]
          Length = 1159

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             K+ S+    LT  E   ++L  +G  +++IA +L +S  TV  +L     KLD  +R+Q
Sbjct: 1090 RKRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQ 1149

Query: 224  AIAKAIRF 231
             + +A + 
Sbjct: 1150 LVQEAAQH 1157


>gi|294010480|ref|YP_003543940.1| response regulator UhpA [Sphingobium japonicum UT26S]
 gi|292673810|dbj|BAI95328.1| response regulator UhpA [Sphingobium japonicum UT26S]
          Length = 207

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGL 200
               GA  +      ++  +    +        LT RE   L+   +G  ++ IA  LG 
Sbjct: 110 AALLGAVSRAFARLDDVDLRTLETSEAGVRVAALTPREREVLERLANGLPNKTIAYDLGC 169

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           S  TV  +  S   KL+  N  +A+  A   G 
Sbjct: 170 SSRTVEVHRASLMAKLEVRNLSEALRIAFAAGM 202


>gi|289754597|ref|ZP_06513975.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289695184|gb|EFD62613.1| predicted protein [Mycobacterium tuberculosis EAS054]
          Length = 677

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 589 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 648

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL   +R+Q   +A R G
Sbjct: 649 YTKLGLSSRLQLAQQAARRG 668


>gi|289644029|ref|ZP_06476128.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289506154|gb|EFD27154.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 73

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT RE     L   G  +E+I E+L +S  TV +++ +   KL A NR  AIA  +R 
Sbjct: 11  LTSREREVADLMCAGLPNEQIGERLVISPATVKSHIRAILRKLGAANRSHAIAIHLRH 68


>gi|288916832|ref|ZP_06411205.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288351717|gb|EFC85921.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 677

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             +    + ++    LT+RE    +L   G ++ EIA  L LS  T+  +L     KL  
Sbjct: 602 RRIAADGRTAAQVAALTDRELDVARLIRSGKSNREIAAALFLSEKTIEHHLTRIFAKLGV 661

Query: 219 VNRIQAIAKAIRF 231
            +R  A +   R 
Sbjct: 662 SSRAAAASILTRA 674


>gi|284034369|ref|YP_003384300.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283813662|gb|ADB35501.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 199

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L+    G T++EIA  L LS  TV  YL     K  A +RI+AI KA   G
Sbjct: 138 PLTDRECEVLRQVTTGATAQEIARTLSLSAGTVRNYLSRILTKTGARSRIEAIRKAQDAG 197

Query: 233 YI 234
           +I
Sbjct: 198 WI 199


>gi|212694892|ref|ZP_03303020.1| hypothetical protein BACDOR_04426 [Bacteroides dorei DSM 17855]
 gi|237710761|ref|ZP_04541242.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237727151|ref|ZP_04557632.1| transcriptional regulator [Bacteroides sp. D4]
 gi|265750433|ref|ZP_06086496.1| 6-phosphogluconate dehydrogenase [Bacteroides sp. 3_1_33FAA]
 gi|212662570|gb|EEB23144.1| hypothetical protein BACDOR_04426 [Bacteroides dorei DSM 17855]
 gi|229434007|gb|EEO44084.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229455483|gb|EEO61204.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|263237329|gb|EEZ22779.1| 6-phosphogluconate dehydrogenase [Bacteroides sp. 3_1_33FAA]
          Length = 203

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L++RE   +     G T++E AEKL LS+HTV  +  +   KL   +       AI  
Sbjct: 132 ETLSQREKEIICCVVRGMTNKETAEKLFLSIHTVITHRRNIARKLQIHSPAGLTIYAIVN 191

Query: 232 GYI 234
             +
Sbjct: 192 KLV 194


>gi|146283191|ref|YP_001173344.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           A1501]
 gi|145571396|gb|ABP80502.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           A1501]
 gi|327481559|gb|AEA84869.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 215

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLG 199
             ++        +++   L  +++ SSA      LT RE   L LAG G ++ EI EKL 
Sbjct: 118 RTLLTGGDWLPRELMEALLSRYRQLSSANQVIDELTLREKQILALAGQGLSNAEIGEKLH 177

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQ 223
           LS+HT+ +++ +A  KL A NR Q
Sbjct: 178 LSIHTIKSHVHNALRKLGASNRAQ 201


>gi|332669021|ref|YP_004452029.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338059|gb|AEE44642.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 222

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 18/162 (11%)

Query: 91  SIQEETVIESSGQLSVRLEGGLL---PFAGIAFPVRLGFHKNGYVIFTSEF---LMLANE 144
            + +   +E++ QL +              +     L       +   +           
Sbjct: 61  RMADMDGVEATRQLFLPERAARRTRPLRVLVLTTFDLDDRAAAAIRHGASGFLLKDTTPA 120

Query: 145 VIIEAHG--------ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
           ++ +A             Q ++  LE   +  + A      L+++E    +    G ++ 
Sbjct: 121 MLRDAIRTVHAGNAVLAPQDLSTLLEGRFRTPTPAPPGYLALSDKEREVFEAVARGLSNT 180

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           EIA+ +  S  TV  ++GS   KL   +R+Q +  A   G +
Sbjct: 181 EIAQAVLASESTVKTHVGSILRKLALRDRVQVVVFAHEHGLV 222


>gi|257092348|ref|YP_003165989.1| two component LuxR family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044872|gb|ACV34060.1| two component transcriptional regulator, LuxR family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 213

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            +E+ + R SA+  L++RE   L+    G +  +IAE L LS  TV  Y      K    
Sbjct: 138 AVEVGQGRKSASDALSDREIEVLRRLASGESLTQIAEALHLSPKTVTTYRARIVEKTGLH 197

Query: 220 NRIQAIAKAIRFGYI 234
           +  +    A+  G +
Sbjct: 198 SNAELTRYALDKGML 212


>gi|322421400|ref|YP_004200623.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320127787|gb|ADW15347.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 216

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 34/74 (45%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              +  +  +   NL+ RE   LQL  DG  ++EIA   G+SV TV     S   KLD  
Sbjct: 139 LQRIPDEVPATYENLSAREREILQLIADGSNAKEIAFAFGVSVKTVENQRHSIMKKLDLF 198

Query: 220 NRIQAIAKAIRFGY 233
           +  +    A+R G 
Sbjct: 199 SIAELTKYAVRQGL 212


>gi|239983155|ref|ZP_04705679.1| LuxR family transcriptional regulator [Streptomyces albus J1074]
 gi|291454986|ref|ZP_06594376.1| LuxR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291357935|gb|EFE84837.1| LuxR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 275

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 52/167 (31%), Gaps = 12/167 (7%)

Query: 80  FNSGLLPI---IWQSIQEETVIESSGQLSVRLEGGLLPFAG----IAFP-----VRLGFH 127
                 P+      +            ++      LL  AG     + P     VR    
Sbjct: 108 ALRAPTPVGDRTLSAAVAAARDIEQALVAREEAAHLLSRAGEPPRTSSPAAWEEVREIHG 167

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +   +        L  E++              +            LT RE   L     
Sbjct: 168 ELRTLAGRLPDPALRAELLAACTRLARAGQPGAVAPPGAPKLPPTVLTPREVDVLVCVAG 227

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G T+  +A +LG+   TV  YL SA  KL A  R++A+  A R G +
Sbjct: 228 GATNAAVAGRLGVRPETVKGYLRSAMRKLGAHTRLEAVVAARRQGLL 274


>gi|237728835|ref|ZP_04559316.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909457|gb|EEH95375.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 201

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+ R+   L +   G ++++I   L +S  TV A+L S   +L+  NR QA   
Sbjct: 142 LSARQREILTMLAAGESNKQIGRLLNISTGTVKAHLESLYQRLEVKNRTQAAMM 195


>gi|183602522|ref|ZP_02963887.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190596|ref|YP_002967990.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196002|ref|YP_002969557.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218163|gb|EDT88809.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240248988|gb|ACS45928.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250556|gb|ACS47495.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178334|gb|ADC85580.1| hypothetical protein BIF_00316 [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793583|gb|ADG33118.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 228

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            Q     L   K    A  +++  E + ++L  +G ++  IAE+ G S  TV  Y+  A 
Sbjct: 151 QQAHERLLMQGK---PAIMSMSPNEQAVMELCSEGLSTRTIAEETGDSESTVKTYISRAM 207

Query: 214 VKLDAVNRIQAIA 226
            KL A +R +A+A
Sbjct: 208 RKLRAKSRAEAVA 220


>gi|86739019|ref|YP_479419.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86565881|gb|ABD09690.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R LT RE   + L G G +++EIA +L +S  T   ++    VKL A +R Q    A + 
Sbjct: 152 RGLTVREREVMSLVGHGLSNDEIAARLVISPATARTHVSRVMVKLAARDRAQLAVLAHQA 211

Query: 232 GYI 234
           G +
Sbjct: 212 GLV 214


>gi|260904389|ref|ZP_05912711.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 220

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            +   A   LTERE   +Q    G T+ EI ++L  S  TV A+L S   +L   NR++ 
Sbjct: 147 DQAIEALSQLTEREREVVQYVAQGLTNAEIGKRLHCSPATVKAHLASIFTQLQITNRVRL 206

Query: 225 IAKAIRFGY 233
                  G 
Sbjct: 207 AVLGHDAGL 215


>gi|317503418|ref|ZP_07961460.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315665470|gb|EFV05095.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   L L   G+ ++EIA +L + + TV ++  +   KL   +       A+  GY
Sbjct: 149 LSDREIEVLSLIAQGFINKEIANQLNIGLTTVISHRKNIVEKLGMKSVSALTIYAVMHGY 208

Query: 234 I 234
           +
Sbjct: 209 V 209


>gi|293607367|ref|ZP_06689706.1| LuxR family DNA-binding response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814211|gb|EFF73353.1| LuxR family DNA-binding response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%)

Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            A  A   V        +  ++  R LT R+   L+L  DG  ++EI+E+L ++  TV  
Sbjct: 122 AAQPAHRPVAAAAATATQDEAALLRTLTPRQQEVLRLMCDGLRNKEISERLCMTEKTVKT 181

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ +    L  +NR QA   A R G
Sbjct: 182 HVSAILAALGVLNRTQATLVARRGG 206


>gi|295700936|ref|YP_003608829.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440149|gb|ADG19318.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 218

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTE 176
            P+ +   K G V F  +      + ++EA  A  +V  +     +   +      +LT 
Sbjct: 93  IPMSVRAMKTGAVDFLPK--PFRGQDMVEAVTAALEVDRERRAKEQSAVALRKQYESLTP 150

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           RE   ++L   G  +++IA +L LS  TV  + G A  K+ + +    + KA   G +
Sbjct: 151 RERKIMELVASGLLNKQIATELNLSEITVKLHRGQAMKKMKSPSFADFVLKAEALGLV 208


>gi|260885074|ref|ZP_05896688.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260874602|gb|EEX81671.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
          Length = 254

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 186 GELLTAREVEVVHAIRLGLSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238


>gi|320012915|gb|ADW07765.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 204

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                  +        +  +  R+LTERE   L+L  DG ++ EIAE+L +S+HTV+ ++
Sbjct: 121 QRIIEGHLRGRRRPSDQDLARLRDLTEREIDVLRLIRDGLSNAEIAERLVVSLHTVSTHV 180

Query: 210 GSATVKLDAVNRIQAIAKAI 229
                K    +R QA   A 
Sbjct: 181 SRVLTKTGCQSRAQAAVLAR 200


>gi|269127167|ref|YP_003300537.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268312125|gb|ACY98499.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 201

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 49/144 (34%), Gaps = 7/144 (4%)

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGA 152
             + G               +     LG          +            E +  A   
Sbjct: 58  PGADGLTVAEQLRETGARCAVCILTSLGRPGYLRRAMAAGVRGFIAKDAPAEDLAAAVRK 117

Query: 153 CYQ--VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            +      D        ++    LTERE   L+L G G  +  IAE L LS  TV  YL 
Sbjct: 118 VHAGGRYLDAELAASAMAAGDNPLTERERQILRLIGRGMEAPGIAEALHLSQGTVRNYLS 177

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           SA  KLDA NR+ A+  A   G+I
Sbjct: 178 SAMTKLDAPNRLAAVRTAEEMGWI 201


>gi|120611131|ref|YP_970809.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|326317560|ref|YP_004235232.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|120589595|gb|ABM33035.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
 gi|323374396|gb|ADX46665.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 208

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 4/136 (2%)

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153
           ++ ++E    L +    G          ++ G        F  + L+   + +++     
Sbjct: 70  QDRLLERKSPLPIVFITGHGDVPMAVNTMKKGALDFIQKPFNEDELVSLVDRMLDRARES 129

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +            R +    LT RE   L+    G  +++IA+ LG+S+ TV A+  +  
Sbjct: 130 FAGHQQAAS----RDALLSKLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIM 185

Query: 214 VKLDAVNRIQAIAKAI 229
            KL+A      +  A+
Sbjct: 186 EKLNANTVADLLKIAL 201


>gi|83312763|ref|YP_423027.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947604|dbj|BAE52468.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 153 CYQVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
             QV+   ++      +     L +RE   L L   G  S EIA  LG++V TV  +  +
Sbjct: 130 ATQVMLRHIQSDADTVAPPPSVLGKREREVLVLLAGGLRSAEIAASLGIAVGTVEVHRRN 189

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL        I  A+  G I
Sbjct: 190 IKQKLGMNRTADLIRYAVHEGLI 212


>gi|86140863|ref|ZP_01059422.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832805|gb|EAQ51254.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 208

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 159 DFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           D     +  S+ +++  LT+R+   L+L   G TS EIA++L + VHTV+ +  +    L
Sbjct: 130 DLRAFEENHSATSKSGLLTKRQLEILRLIAQGKTSREIADELFIGVHTVDTHRKNMMRIL 189

Query: 217 DAVNRIQAIAKAIRF 231
           +   + + +  A+  
Sbjct: 190 ELKGKGELLRYALDR 204


>gi|148547271|ref|YP_001267373.1| response regulator receiver protein [Pseudomonas putida F1]
 gi|148511329|gb|ABQ78189.1| response regulator receiver protein [Pseudomonas putida F1]
          Length = 265

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 76/257 (29%), Gaps = 35/257 (13%)

Query: 6   LTGKKSSSLQELSPRL--HLIQNRIKA--RNFALYTINSALDFPRRQQLICELHNYDLDS 61
           +T  +++ L  +   +    +   + A  R+   + ++ A  F   Q  +   + Y+   
Sbjct: 1   MTKDEANELAAVIEAIGSEQLGPALDAWLRSKLTFDMSCAYLFQFNQPALLVHNGYNRTV 60

Query: 62  GDI---PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV------RLEGGL 112
            +      +      D F     +     +W+  +       S   ++       +    
Sbjct: 61  TERTLNAYVRGGYLLDPFYVACVNEHPSGLWRMSELAPDCFFSSGFAISKDIHPCVSSDY 120

Query: 113 L---PFAGIAFPVRLGFHKNGYVIF---TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166
                  G   P+R        ++    + +F     +++         V      L   
Sbjct: 121 GTAVDEVGFIIPLRPRLAIVYSLMRNHGSGDFGAGEMDLLAAMSPLLASVFGQHCRLRYA 180

Query: 167 RSSAARN----------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               A                  LTE +    +L   G+++  IA +L +S  TV  +  
Sbjct: 181 DILRAAPEGVVLEDAFVEILQGQLTETQRLIAKLLLQGHSNASIARQLNISDGTVKVHKH 240

Query: 211 SATVKLDAVNRIQAIAK 227
           +   +L+  +  +    
Sbjct: 241 NIYQRLEISSNAELFRL 257


>gi|317057939|gb|ADU90664.1| putative LuxR family two component transcription regulator
           [Collimonas sp. MPS11E8]
          Length = 210

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              +      L++RE   L+L   G +  E AE+L +S  TV+ +      K++  N ++
Sbjct: 139 SSDQRPPHELLSDREFHILRLLVRGNSVNEAAEELSISNKTVSTHKARLMQKMNFQNNVE 198

Query: 224 AIAKAIRFGYI 234
            +  A+ +  I
Sbjct: 199 LVRYAVTYNLI 209


>gi|294813789|ref|ZP_06772432.1| two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326388|gb|EFG08031.1| two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
          Length = 224

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H              ++       L+ RE   L L G+G ++ +   +L +S  TV  Y+
Sbjct: 138 HVVDQLATGHAASRNERARERVAQLSARERDVLSLLGEGLSNADAGRRLHMSEATVKTYV 197

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL+  NR+QA   A   G 
Sbjct: 198 SRILAKLECENRVQAALLARDAGL 221


>gi|226362416|ref|YP_002780194.1| serine/threonine protein kinase [Rhodococcus opacus B4]
 gi|226240901|dbj|BAH51249.1| putative serine/threonine protein kinase [Rhodococcus opacus B4]
          Length = 1087

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%)

Query: 129  NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
             G +   +               A    + + +      +  +   T+RE     L  +G
Sbjct: 980  RGAMTEQAFAAAHRKGEAFGFDAAVAYALGEQVSAASTSAGPSPKPTKREREVAALIAEG 1039

Query: 189  YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             T++EIA +L +S  T   ++     KL   +R Q  A  + 
Sbjct: 1040 LTNKEIAARLVISPRTAQGHVEHLLTKLGFNSRAQIAAWVVE 1081


>gi|212640294|ref|YP_002316814.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561774|gb|ACJ34829.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 199

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +   S    LT  E   LQ+  D  TS +I+E+L +S  T+  +L S   KL  ++R  
Sbjct: 128 SETMYSTKHGLTNIEIDILQMLADDQTSVQISERLKISKRTMERHLSSIFEKLGVLSRTG 187

Query: 224 AIAKAIRFGYI 234
           A+A+A+R   I
Sbjct: 188 AVAEALRLQLI 198


>gi|260904164|ref|ZP_05912486.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 222

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 LT RE    +    G T+ ++A  L +S  TV  +L     KLD   R+Q    
Sbjct: 158 PDPLEPLTTREREIAEAVAQGMTNAQVARALFVSTATVKTHLARIFYKLDVSTRVQLALL 217


>gi|77460779|ref|YP_350286.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384782|gb|ABA76295.1| putative GerE familyregulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 266

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 54/212 (25%), Gaps = 27/212 (12%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           + SA   P+                      +    D F           +++  +    
Sbjct: 47  LFSADRHPQVFAECPGADGSPDQLFQDYLRGLYLL-DPFYIACREQSRTGLYRLSEVAPE 105

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                +   R     +    I F  +L        +          E I         V+
Sbjct: 106 HFELTEYYQRYFRLNVVADEIQFNCQL-EGDRTLCLSLGSQQRFTGEQIALLSLIQPWVL 164

Query: 158 T-----------DFLELFKKRSSA--------------ARNLTERETSCLQLAGDGYTSE 192
                       + + L    +                   LT RE    +L   G +S+
Sbjct: 165 GLLRQRLPYEINETVALAPAPAQPDWRVQLEASVQQLKGAQLTARELDVGRLMLSGCSSK 224

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           EIA KL +SV TV  +      KL   ++ + 
Sbjct: 225 EIARKLEISVETVKVHKKHMYSKLGIKSQSEL 256


>gi|83745854|ref|ZP_00942911.1| transcriptional regulator/response regulator LuxR family [Ralstonia
           solanacearum UW551]
 gi|207742983|ref|YP_002259375.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|300703908|ref|YP_003745510.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum CFBP2957]
 gi|83727544|gb|EAP74665.1| transcriptional regulator/response regulator LuxR family [Ralstonia
           solanacearum UW551]
 gi|206594380|emb|CAQ61307.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|299071571|emb|CBJ42895.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum CFBP2957]
          Length = 210

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176
            P+ +   K G V F           + E                +++ +A      LT 
Sbjct: 97  VPMAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARTEDSAAREQKAALDLLSRLTT 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           RE   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|91978329|ref|YP_570988.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91684785|gb|ABE41087.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 309

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 60/200 (30%), Gaps = 22/200 (11%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
            ++         A  + ++        + +  +          P        D       
Sbjct: 117 EMLARIRVHLGNARLSQSARAALDVSGRFLLAVDRLGKVLWATPQAQKLLAADGVSTEGF 176

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
              LP  W    E+                    +G+A P           +  ++ L L
Sbjct: 177 RLDLPKPWLDWLEQ------------------LHSGLAQP----KTPMKASLLRNDELRL 214

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
                + A+    ++  D      +  +    LT RE+  L     G T+ +IA+ LGLS
Sbjct: 215 QYMGKLGANEFLLRLARDTSTDSPREFATEFGLTSRESEVLAWLSKGKTNRDIAQILGLS 274

Query: 202 VHTVNAYLGSATVKLDAVNR 221
             TV+ +L     KL   NR
Sbjct: 275 PRTVDKHLEQIYAKLGVENR 294


>gi|310659584|ref|YP_003937305.1| hypothetical protein CLOST_2283 [Clostridium sticklandii DSM 519]
 gi|308826362|emb|CBH22400.1| protein of unknown function [Clostridium sticklandii]
          Length = 568

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L      +  +  LT RE     LA  G  + EI+EKL +S +TV  +L S   KLD   
Sbjct: 499 LRQEYGETFPSD-LTAREKEVAILASKGLRNTEISEKLMISENTVKYHLRSIFQKLDVDR 557

Query: 221 R 221
           R
Sbjct: 558 R 558


>gi|298372989|ref|ZP_06982979.1| DNA-binding response regulator, LuxR family [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298275893|gb|EFI17444.1| DNA-binding response regulator, LuxR family [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   +  A  G + +EIA+K+ +S+ TV+ +  +   K      +  +  A+  G I
Sbjct: 151 TAREREVMLYAASGLSGKEIADKMNISLRTVDKHKNNIFTKFGFKTSMDMVNFAVHHGII 210


>gi|255693676|ref|ZP_05417351.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
 gi|260620493|gb|EEX43364.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
          Length = 259

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 8/228 (3%)

Query: 11  SSSLQELSPRLHLIQNRIKARNF-ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
             SL E++    +I +    +++ A++     L    ++  +  + + D D   I   + 
Sbjct: 34  IHSLTEINGGCAVISDLSNRKSYIAVHPWAHFLGLTPKEAALSVIDSMDEDC--IYRRI- 90

Query: 70  ETYGDDFLFHFNS---GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
               D                   S +            +  +G       +   +    
Sbjct: 91  -HPEDLVEKRLLEYQFFQKTFSMSSEERLKYRGRCRIRMMNEKGVYQYIDNLVQIMENTP 149

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
             + ++IF    L          +     +    +E+          L+ERE   L+   
Sbjct: 150 SGSVWLIFCLYTLSADQRTEQGIYPTITHMERGEVEMLFLSEEHRNILSEREKEILRCIR 209

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G +S+EIA  L +SV+TVN +  +   KL   N I+A   A     +
Sbjct: 210 KGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKLL 257


>gi|160885164|ref|ZP_02066167.1| hypothetical protein BACOVA_03162 [Bacteroides ovatus ATCC 8483]
 gi|156109514|gb|EDO11259.1| hypothetical protein BACOVA_03162 [Bacteroides ovatus ATCC 8483]
          Length = 259

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 8/228 (3%)

Query: 11  SSSLQELSPRLHLIQNRIKARNF-ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
             SL E++    +I +    +++ A++     L     +  +  + + D D   I   + 
Sbjct: 34  IHSLTEINGGCAVISDLSNRKSYIAVHPWAHFLGLTPEEAALSVIDSMDEDC--IYRRI- 90

Query: 70  ETYGDDFLFHFNS---GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
               D                   S +            +  +G       +   +    
Sbjct: 91  -HPEDLVEKRLLEYQFFQKTFSMSSEERLKYRGRCRIRMMNEKGVYQYIDNLVQIMENTP 149

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
             + ++IF    L                +    +E           L+ERE   L+   
Sbjct: 150 SGSVWLIFCLYTLSADQRTEQGICPTITHMERGEVETLFLSEEHRNILSEREKEILRCIR 209

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G +S+EIA  L +SV+TVN +  +   KL   N I+A   A     +
Sbjct: 210 KGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKLL 257


>gi|161524306|ref|YP_001579318.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189350938|ref|YP_001946566.1| putative signal transduction response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221198444|ref|ZP_03571490.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD2M]
 gi|221208607|ref|ZP_03581608.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD2]
 gi|221214793|ref|ZP_03587762.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD1]
 gi|99652803|dbj|BAE94656.1| response regulator [Burkholderia multivorans]
 gi|160341735|gb|ABX14821.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189334960|dbj|BAG44030.1| putative signal transduction response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221165332|gb|EED97809.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD1]
 gi|221171598|gb|EEE04044.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD2]
 gi|221182376|gb|EEE14777.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD2M]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++      LT R
Sbjct: 97  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|13475464|ref|NP_107028.1| two-component regulator [Mesorhizobium loti MAFF303099]
 gi|14026216|dbj|BAB52814.1| two-component regulator [Mesorhizobium loti MAFF303099]
          Length = 223

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +E   + + + + LT+RE   LQL G+G +++EIA  L +SV TV  ++ +   KL    
Sbjct: 137 MERNTRPAESTKALTQREGEVLQLIGNGLSNKEIALDLSVSVATVKHHVHNILQKLKLPR 196

Query: 221 RIQAIAKAIRFGYI 234
           R QA+ +     +I
Sbjct: 197 RTQAMRRVREAPWI 210


>gi|297158227|gb|ADI07939.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 249

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L G+G  + +IAE++GL+  TV  ++ +   KL  VNR+QA   A R G 
Sbjct: 152 LTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRALLAKLGGVNRVQAAIVADRAGL 211

Query: 234 I 234
           +
Sbjct: 212 L 212


>gi|294632015|ref|ZP_06710575.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292835348|gb|EFF93697.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 219

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                  + T     +       A       +              R L+ RE   L+L 
Sbjct: 110 AGGVKGYVVTGTRTNVGLPARPGAAPIGAARLHRRPPGAPSHPGGYRELSGREVEVLRLV 169

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +G +++ I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 170 AEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 218


>gi|226355253|ref|YP_002784993.1| LuxR family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226317243|gb|ACO45239.1| putative transcriptional regulator, LuxR family protein
           [Deinococcus deserti VCD115]
          Length = 762

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 75/258 (29%), Gaps = 34/258 (13%)

Query: 9   KKSSSLQELSP-----------RLHLIQNRIKARNFALYTIN-----SALDFPRRQQLIC 52
           + ++SL +L              L  +    +A  +A    +        D   R  L+ 
Sbjct: 504 QDAASLDQLRTNSAYAMNNSVFSLLELGQYDQALGYATSARDQLLKLGHHDAETRNTLVG 563

Query: 53  ELHNYDLDSGDIPNILIETYGDDFLF-----HFNSGLLPI--IWQSIQEETVIESSGQLS 105
             H +             +  D  L      H  +       +  +  ++ +       +
Sbjct: 564 HAHYHLGRWLAA-AESYLSSLDFSLRRGYWVHARNAARGFGMVVAATGDDALAVRLTAFA 622

Query: 106 VRLEGGLLPF------AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
            RL             A +   +     +  Y     E      E    A  A  Q + D
Sbjct: 623 DRLSLPHHSRYIESMQAQVLSQLHDRLGEVAYQQAWREGAQWTPEEARRAAAAFAQTLKD 682

Query: 160 FLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                    + A      LT RE   L L   G+    IA+ L +S  T + ++G+   K
Sbjct: 683 METPSAPTHAPAALDTPELTTREREVLILLVQGHPDRRIAKLLNISPGTASKHVGNMLGK 742

Query: 216 LDAVNRIQAIAKAIRFGY 233
           L   NR+     A+  G 
Sbjct: 743 LGLRNRVDLARWALERGI 760


>gi|187924385|ref|YP_001896027.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715579|gb|ACD16803.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 220

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG------FHKNGYVIFTSEFLMLANEV 145
           +      ES       L G  L    +               K G V F  +     N+ 
Sbjct: 66  LDVRLRGESGLAFQQELAGSGLHMPILFITAHGDIEMTVKAMKAGAVDFIPK--PFRNQD 123

Query: 146 IIEAHGACYQVITDFLELFKK---RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +I+A     +   + L++ +      +A  +LT RE   +     G  +++IA ++ LS 
Sbjct: 124 LIDAVDQALKRDRERLDVEQANGALRAAYESLTPREKEVMGFVVMGLMNKQIASEMHLSE 183

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228
            TV  + G A  K+ A +    + KA
Sbjct: 184 ITVKIHRGQAMKKMAARSVADLVRKA 209


>gi|127514434|ref|YP_001095631.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126639729|gb|ABO25372.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 198

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 38/73 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           EL          L ++E   L+LA +G +S EIA  L ++  TV  YL  A  KL+A NR
Sbjct: 126 ELAIMAVGEQDPLNDKERRALRLASEGRSSAEIAASLFIAEGTVRNYLSEAIAKLNASNR 185

Query: 222 IQAIAKAIRFGYI 234
           I A   A + G++
Sbjct: 186 IDAARIAKQKGWL 198


>gi|329965227|ref|ZP_08302157.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328523247|gb|EGF50347.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 204

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++RE   +     G T++ IA+KL LS+HTV  +  +   KL   +       AI   
Sbjct: 134 ALSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNK 193

Query: 233 YI 234
            +
Sbjct: 194 LV 195


>gi|239933771|ref|ZP_04690724.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 188

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +        L  +++                     S  A+ LT RE   ++L  +G
Sbjct: 85  QAVLAAARGDGDLPADLLGRLIRQMGT--KSPNAAVGNSSYPAQRLTPREVDVMRLVAEG 142

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + + +IA KL  S  T+   +   T +L+  NR  A+A A+R GYI
Sbjct: 143 FGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGYI 188


>gi|254514035|ref|ZP_05126096.1| two component transcriptional regulator, LuxR family [gamma
           proteobacterium NOR5-3]
 gi|219676278|gb|EED32643.1| two component transcriptional regulator, LuxR family [gamma
           proteobacterium NOR5-3]
          Length = 219

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159
           ++   +VR        A ++                +    L   + I  +GA  Q +  
Sbjct: 84  NTHAETVRRAIDHGAAAFLSKSSSTDTMVQCIEQVLAGERGLHPGLDISVNGASLQALDV 143

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              L         +LT ++     +  +G  +++IA +LG+   T+ A++     KL   
Sbjct: 144 ADALA--------SLTPQQFRVASMLVEGLLNKQIAYELGVKEATIKAHMTEVFRKLGVQ 195

Query: 220 NRIQAI 225
           +R QA+
Sbjct: 196 SRTQAV 201


>gi|188993657|ref|YP_001905667.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735417|emb|CAP53632.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 274

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R+LT ++   LQ+ G G  +++IA  LG+S  T+ A++ +   KL   NR QA+  A
Sbjct: 198 RLRDLTPQQFRVLQMLGVGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 256


>gi|75812851|ref|YP_320468.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705607|gb|ABA25279.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 262

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTE---RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +I +          +   L++   +E + L+LA  G  + EIA  + +S  TV +Y
Sbjct: 135 INRILIDNLRSNDTADRDSLDLLSDFSNKEITVLKLAAGGMKNNEIANVMYVSEGTVRSY 194

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L ++ +KL   +R+ AI +AIR G +
Sbjct: 195 LHNSFIKLGVKDRLNAIREAIRLGIL 220


>gi|17158788|ref|NP_478299.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134737|dbj|BAB77295.1| alr7652 [Nostoc sp. PCC 7120]
          Length = 262

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTE---RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               +I +          +   L++   +E + L+LA  G  + EIA  + +S  TV +Y
Sbjct: 135 INRILIDNLRSNDTADRDSLDLLSDFSNKEITVLKLAAGGMKNNEIANVMYVSEGTVRSY 194

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L ++ +KL   +R+ AI +AIR G +
Sbjct: 195 LHNSFIKLGVKDRLNAIREAIRLGIL 220


>gi|325068150|ref|ZP_08126823.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Actinomyces oris
           K20]
          Length = 226

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           RS+A   LT+RE   ++   +G  + E A +L +S  TV  ++ +   KL   NR Q   
Sbjct: 158 RSTAFAALTDREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRTQVAV 217

Query: 227 KAIR 230
              R
Sbjct: 218 MYYR 221


>gi|302542477|ref|ZP_07294819.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460095|gb|EFL23188.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------- 173
           +R G          +  L+ A   +    G     +T  L     RS  A          
Sbjct: 106 LRAGAAGFLLKDSDAARLVEAVRTVARGEGLIAPAVTRRLIKEFARSGTATTADPSVLAV 165

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT RE   L   G G ++ EIA  L ++  TV  ++     KL+  +R+QA   A   G
Sbjct: 166 LTPREREVLGCLGRGMSNAEIATHLTMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 224


>gi|257063010|ref|YP_003142682.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790663|gb|ACV21333.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 505

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 2/108 (1%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176
           G  F        +G V  T    M   +           +  + +       +    L+ 
Sbjct: 385 GFLFEFSDRTKSDGDVSPTVADRMRDPDPRDM--EVSVVIFHEAVNRRCADVAGEYGLSN 442

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           RE   L     G + +E+A+KL +S  TV  ++     K+    R + 
Sbjct: 443 REEEVLVHIMQGNSIQEVADKLFISPGTVKTHINHIYRKMGVTRRYEL 490


>gi|209520820|ref|ZP_03269564.1| cyclic nucleotide-binding protein [Burkholderia sp. H160]
 gi|209498735|gb|EDZ98846.1| cyclic nucleotide-binding protein [Burkholderia sp. H160]
          Length = 344

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                +LT R+   L L   G +++ IA +L +S  T+  +L +    L+  +R +A   
Sbjct: 150 PDPHLHLTPRQIEVLALLARGRSNKMIARQLDVSEATIKTHLTTIFKALNVSSRGEASIV 209

Query: 228 AIRF 231
           A R 
Sbjct: 210 AARM 213


>gi|254383319|ref|ZP_04998671.1| AbsA2 [Streptomyces sp. Mg1]
 gi|194342216|gb|EDX23182.1| AbsA2 [Streptomyces sp. Mg1]
          Length = 219

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 32/84 (38%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H              +        L+ERE   L L G+G ++ +   +L +S  TV  Y+
Sbjct: 136 HVVDQLASGQAAGRGEAARRRVAELSERERGVLALLGEGLSNADAGRRLHMSEATVKTYV 195

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL   NR+QA   A   G 
Sbjct: 196 SRILAKLGCENRVQAALLARDAGL 219


>gi|146318597|ref|YP_001198309.1| DNA-binding response regulator, [Streptococcus suis 05ZYH33]
 gi|146320797|ref|YP_001200508.1| DNA-binding response regulator [Streptococcus suis 98HAH33]
 gi|253751721|ref|YP_003024862.1| response regulator protein [Streptococcus suis SC84]
 gi|145689403|gb|ABP89909.1| DNA-binding response regulator, putative [Streptococcus suis
           05ZYH33]
 gi|145691603|gb|ABP92108.1| DNA-binding response regulator, putative [Streptococcus suis
           98HAH33]
 gi|251816010|emb|CAZ51628.1| response regulator protein [Streptococcus suis SC84]
          Length = 199

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LTERE   L   G+G   ++IA+ L +S  T+  ++ +   KL+  + ++A+ KA + 
Sbjct: 136 DELTEREKEILIHLGNGEKRKDIAKSLYISDRTLTNHIQNILEKLEVDSTLKAVIKAQKL 195

Query: 232 GYI 234
           GYI
Sbjct: 196 GYI 198


>gi|86356681|ref|YP_468573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280783|gb|ABC89846.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 86

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 32/84 (38%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                            S+    +T RE   +     G T+ EI   LG+S  TVN ++ 
Sbjct: 2   RRGDHAARAHDRRTGAMSAVTSAVTPREREIIGWMAQGKTAAEIGTILGISPITVNTHIS 61

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           +A  KL        +A A+R G I
Sbjct: 62  NAKAKLGVFKETALVAAALRNGII 85


>gi|26988850|ref|NP_744275.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24983655|gb|AAN67739.1|AE016405_2 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
          Length = 219

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 151 GACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              + VI   L   K+   +A    NLT R+   L+L   G ++ EIA  LGLS+ TV  
Sbjct: 129 AIAHTVINQALRHTKQGKPSAGERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVET 188

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +      +L   +    +  A+R   I
Sbjct: 189 HRSQIMKRLQIHDVAGLVLFAVREKII 215


>gi|332970194|gb|EGK09188.1| hypothetical protein HMPREF9374_3042 [Desmospora sp. 8437]
          Length = 223

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 1/115 (0%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLT 175
           G    +  G         T+E +     V          +I     L        +  LT
Sbjct: 89  GYLQFLERGAGGIVLQKNTTELVRAVQVVRNGGWYFSSDLIERIHHLIHGNLHPHKLPLT 148

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             E   +Q      T+++IAE L +S  TV  ++ SA  KL   +R+    K ++
Sbjct: 149 AMEMKVVQELLKDKTNQQIAEALYVSRRTVEYHIASAIQKLGVNSRVGLAVKIMQ 203


>gi|308050738|ref|YP_003914304.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632928|gb|ADN77230.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 215

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 17/180 (9%)

Query: 61  SGDIPNILIETYGD---DFLFHFNSGLLPIIWQSIQEETVIE--------SSGQLSVRLE 109
                        D          +G  P +          +             ++ + 
Sbjct: 24  LRRYYPDCALAEADGAEPLNQALRTGPEPDLLLLDLHIPGAKGFQTLLQIREQYPALPVV 83

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSE---FLMLANEVIIEAHGACYQVITDFLELFKK 166
                               G+V  +      L     V+  A         +  EL + 
Sbjct: 84  VISGQEDDATVAQARQCGAAGFVPKSRPVEAMLDAVAAVLDGAQWWPQSA--EGGELDEM 141

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
                 +L+ R+   L L  +G  +++IA +LGLS  TV A+  +  +KL    R QA+ 
Sbjct: 142 AV-RIASLSPRQHRILMLFAEGLLNKQIATRLGLSEATVKAHASAIFLKLGVRTRTQAVI 200


>gi|298250381|ref|ZP_06974185.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548385|gb|EFH82252.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 908

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            +  L+ +E   L+L   G +  EIA +L +SV+TV  +L     KL+  +R +A  +A+
Sbjct: 844 PSEALSVQEQRVLRLFVAGLSKPEIANELIISVNTVKTHLSRIYRKLNVTSRAEA-REAV 902

Query: 230 RF 231
           R 
Sbjct: 903 RR 904


>gi|284041874|ref|YP_003392214.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946095|gb|ADB48839.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 981

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 2/96 (2%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
                   I          + D      +   A   +T RE   L L  +G T+ +IAE 
Sbjct: 887 REQPLRGAIEALGRRARVALGDDAPPPDRI--AELGITAREREVLTLLAEGRTNRQIAET 944

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L ++  T + ++     KLDA NR +A A A R G 
Sbjct: 945 LVIAEKTASVHVSRILAKLDARNRGEAAAIARRLGL 980


>gi|226944589|ref|YP_002799662.1| Response regulator GacA [Azotobacter vinelandii DJ]
 gi|226719516|gb|ACO78687.1| Response regulator GacA [Azotobacter vinelandii DJ]
          Length = 209

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172
           FP RL      GY+   +  + ++ A   +   H      I   L L     ++  S   
Sbjct: 84  FPTRLMQAGAAGYLTKGAALDEMVQAIRQVFAGHRYISPQIAQQLALKAFQPQQSGSPFD 143

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE     +  +    + I++KL LS  TVN Y      KL   + ++    A+R G
Sbjct: 144 LLSEREIQIALMIANCEKVQSISDKLCLSPKTVNTYRYRIFEKLSINSDVELALLAVRHG 203

Query: 233 YI 234
            +
Sbjct: 204 MV 205


>gi|254381845|ref|ZP_04997208.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340753|gb|EDX21719.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 205

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 4/168 (2%)

Query: 71  TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130
             GD+ L    +  + +    I+   +       S+R     +    +    R G+ +  
Sbjct: 38  ARGDEVLAAARAHDVNVALLDIEMPGMTGIEAAASLRTAVPHVKIVILTTFGRPGYLRGA 97

Query: 131 YVIFTSEFL--MLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                S FL        + +A       + + D        +  A  LT+RE   L+ A 
Sbjct: 98  MEAGASAFLVKDAPAAQLADAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAE 157

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T+ E+AE+L LS  TV  YL +A  KL + NR +A+  A   G++
Sbjct: 158 FGATNAELAERLHLSPGTVRNYLSTAIQKLASRNRAEAVRVAREKGWL 205


>gi|297584895|ref|YP_003700675.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297143352|gb|ADI00110.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 219

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+ A  L++RE   L+    GYT +EI+ +L +S+ TV+ Y      K+ +  +   +  
Sbjct: 149 SNQAVELSQREQEVLKYIALGYTQKEISTELFISIKTVDTYKKRVMEKIGSKKKSALVRY 208

Query: 228 AIRFGYI 234
           A++   I
Sbjct: 209 ALKHNII 215


>gi|124003450|ref|ZP_01688299.1| transcriptional regulator, LuxR family protein [Microscilla marina
           ATCC 23134]
 gi|123991019|gb|EAY30471.1| transcriptional regulator, LuxR family protein [Microscilla marina
           ATCC 23134]
          Length = 235

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   + L   GY + EI E+L +S  TV  +  +   KL+    +  I  A  F 
Sbjct: 174 SLTPREKEIITLLALGYQNNEIGEQLFISKATVEQHRKNLKRKLEIRRFVDLIRFAQAFD 233

Query: 233 YI 234
            I
Sbjct: 234 LI 235


>gi|94970529|ref|YP_592577.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552579|gb|ABF42503.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 228

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 155 QVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           Q++ +     +  +      LT RE   + L  +G  + EIA +L +S  TV  +L    
Sbjct: 145 QLLNELAASSRTEAPRNDFGLTPRELEIVALVTEGCGNREIATRLTISEETVKRHLTHIF 204

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            K+    R++    A+    
Sbjct: 205 DKVGMSTRLELALFALDHNL 224


>gi|91779308|ref|YP_554516.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91691968|gb|ABE35166.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 218

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++E        +   L       S    LT R
Sbjct: 97  VTQAVRAGASGYVLKDSPATEIIQAIGAVLEGKSFFSAGLGARLIQASATQSPVERLTPR 156

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++  LSV TV  +  +   KLD   + + I  A+  
Sbjct: 157 ERDILDALAEGLSSKQIAQRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210


>gi|324999341|ref|ZP_08120453.1| transcriptional regulator, LuxR family protein [Pseudonocardia sp.
           P1]
          Length = 595

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 2/153 (1%)

Query: 85  LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144
            P  W        +   G+L +   G                 + G       +    + 
Sbjct: 10  RPSAWSGNAFTVQVRPDGRLGLADRGDHADVPADLRRAAGAMGRAGLEHCRFHWRSPVSG 69

Query: 145 VIIEAHGACY-QVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           +          +   D +EL           L+ RE   L +   G ++ EIA +L ++ 
Sbjct: 70  LFCRVTLTARTESGFDHVELSGDPVERLPAGLSARELEILTMLVVGPSNAEIAGELRITQ 129

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235
            T   ++     KL    R  A   A+  G +C
Sbjct: 130 RTAATHVTHLMQKLGTPTRTAAATYALDTGLLC 162


>gi|120404725|ref|YP_954554.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957543|gb|ABM14548.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 539

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +     LT RE   L     G T+ ++AE+L LS  TV+ +L +   KL    R  A   
Sbjct: 469 APTPGGLTRRELDVLTRIARGATNRQVAEQLHLSDKTVSRHLANIYAKLGVSTRTAAANW 528

Query: 228 AIRFGYI 234
           A + G +
Sbjct: 529 AFQQGVL 535


>gi|83952296|ref|ZP_00961028.1| putative nitrate/nitrite response regulator protein [Roseovarius
           nubinhibens ISM]
 gi|83837302|gb|EAP76599.1| putative nitrate/nitrite response regulator protein [Roseovarius
           nubinhibens ISM]
          Length = 232

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
             LT+RE   L  A  G  ++ IA+KLGLSVHTV  ++     KL   NR +A
Sbjct: 166 DRLTDREFEVLSCAAQGNQNKIIADKLGLSVHTVKLHMHHVIAKLGVHNRTEA 218


>gi|304395728|ref|ZP_07377611.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304357022|gb|EFM21386.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 193

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%)

Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           ++ + +   A   V+       +        LT++E   L L   G ++ +IA +L +S 
Sbjct: 104 SQRMAQLLSAILAVLGGQTAFPEMDDEPELPLTQKERQILALLASGLSNLQIAAQLHISN 163

Query: 203 HTVNAYLGSATVKLDAVNRIQAI 225
            TV+ +  +   K  A + ++  
Sbjct: 164 KTVSTHKKNILEKTGARSVVELA 186


>gi|254390125|ref|ZP_05005345.1| two component response regulator MppU [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817119|ref|ZP_06775761.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326445989|ref|ZP_08220723.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703832|gb|EDY49644.1| two component response regulator MppU [Streptomyces clavuligerus
           ATCC 27064]
 gi|294321934|gb|EFG04069.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 209

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
                LA +V+I       +++        +R+S    LT RE    +L  DG T+ EI 
Sbjct: 117 GVRAALAGDVLISPQLTA-RLLQRATAPDDRRTSP---LTAREEEIARLVADGLTNAEIG 172

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           E L +S  T   ++ +   KL A NR+   A 
Sbjct: 173 EALVISPGTAKTHVANVQTKLGARNRVGIAAW 204


>gi|186474725|ref|YP_001863696.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184198684|gb|ACC76646.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 213

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR G             ++ A   +++      + +   L            LT RE   
Sbjct: 100 VRAGARGYLLKDSPGAEIIRAIGAVLDGKTFFSEGLGARLIQASTLRDPTERLTPRERDI 159

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L    +G +S++IA++ GLSV TV  +  +   KL+   + + I  A+  
Sbjct: 160 LDQLAEGLSSKQIAQRSGLSVRTVETHRQNLKRKLEIDGQAELIKFAVEH 209


>gi|70729573|ref|YP_259311.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens Pf-5]
 gi|68343872|gb|AAY91478.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens Pf-5]
          Length = 221

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 161 LELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +  S        LT ++   L+    G ++++IA  L ++  TV A++ +   KL+
Sbjct: 140 RRSSETPSFPPELLQALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLN 199

Query: 218 AVNRIQAIAKA 228
             NR+QAI  A
Sbjct: 200 VHNRVQAILSA 210


>gi|330446242|ref|ZP_08309894.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490433|dbj|GAA04391.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  + L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFASNSENPFKELSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 ISGDVELTHLAIRHGML 209


>gi|323137867|ref|ZP_08072942.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
 gi|322396870|gb|EFX99396.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
          Length = 273

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 52/98 (53%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G   F S+       + + A  A   ++  F+++ K RS    NLT RE S L   G G+
Sbjct: 141 GGAGFVSKRAPPERLLDVLAAVAAGDMVFPFVDIRKMRSDPLENLTLRERSLLSALGSGH 200

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T+ ++A+  G+S++T+  +L +   KL+  NR QAIA 
Sbjct: 201 TNSQLAKDFGVSINTIKFHLRNLFEKLEVRNRAQAIAL 238


>gi|302039255|ref|YP_003799577.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300607319|emb|CBK43652.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                ++   L L   ++   + LT R+   LQL  +G T+++IA +L +S  TV  +  
Sbjct: 128 LIAKDLLDVLLTLGAGQAQQRKTLTFRQREVLQLLAEGRTAKDIALRLKISTRTVEFHKA 187

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               +L+     + I  A+  G+I
Sbjct: 188 QLMEQLNLHTTAELIKYALTHGFI 211


>gi|288916240|ref|ZP_06410620.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288352431|gb|EFC86628.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 189

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 6/138 (4%)

Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161
               +         AG +  +         +            +   A        T   
Sbjct: 50  TSFDLDEYVFAGLRAGASGFLLKDAPPEDLLTAIRVVAAGDALLSPAATRRLIDRFTATP 109

Query: 162 ELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                    +        LT+RE   L     G ++ EIA  L L+  T+  ++ +   K
Sbjct: 110 PAEGDAPEPSPSRQLLSRLTDRERDVLTRVARGMSNAEIAADLVLATSTIKTHMTNLLAK 169

Query: 216 LDAVNRIQAIAKAIRFGY 233
             + +R Q +  A   G 
Sbjct: 170 TSSRDRTQLVIFAYESGL 187


>gi|290956373|ref|YP_003487555.1| response regulator [Streptomyces scabiei 87.22]
 gi|260645899|emb|CBG68990.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 299

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 8/162 (4%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
            +    +      E++++      ++          G +        +    +      +
Sbjct: 137 RTVGAALDAARDLEQSLVVRDEARNLLATARAGTAHGNSAGAWEEVREAHGALRALAPRI 196

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSE 192
               +  E    C ++             AA          LT RE   L     G T+ 
Sbjct: 197 DDPGLRAELLRVCGRLAGASASGEDAAGPAAPVRDGGERVALTAREVDVLACVAMGATNA 256

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             A++LGL   TV AYL SA  KL A  R++A+  A R G +
Sbjct: 257 VAAQRLGLRPETVKAYLRSAMRKLGAHTRLEAVVAARRAGLL 298


>gi|258541258|ref|YP_003186691.1| LuxR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632336|dbj|BAH98311.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635393|dbj|BAI01362.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638448|dbj|BAI04410.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641502|dbj|BAI07457.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644557|dbj|BAI10505.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647612|dbj|BAI13553.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650665|dbj|BAI16599.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653656|dbj|BAI19583.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 299

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           NLT RE   L     G T+ +IAE L +S  TVN +L  + +K+   NR  A A+ ++ 
Sbjct: 238 NLTAREAEVLFWIAKGKTNRDIAEILSISHRTVNKHLEQSYIKIGVENRAAATARVLQA 296


>gi|159037162|ref|YP_001536415.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157915997|gb|ABV97424.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + A + +++      +V+       ++     ++LTE+E   L+   +G T+ EIA K
Sbjct: 116 RRVAAGQSLLDP-AITTRVLERIRSGVEQ-PRELKSLTEQERRILEYVAEGLTNREIAGK 173

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L+  TV  Y+ S   KL    R QA   A R 
Sbjct: 174 MFLAEKTVKNYVSSMLAKLGLERRTQAAVLATRL 207


>gi|89073041|ref|ZP_01159588.1| response regulator [Photobacterium sp. SKA34]
 gi|90578924|ref|ZP_01234734.1| response regulator [Vibrio angustum S14]
 gi|89051259|gb|EAR56715.1| response regulator [Photobacterium sp. SKA34]
 gi|90439757|gb|EAS64938.1| response regulator [Vibrio angustum S14]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  + L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFASNSENPFKELSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 ISGDVELTHLAIRHGML 209


>gi|329894383|ref|ZP_08270253.1| Transcriptional regulator, LuxR family [gamma proteobacterium
           IMCC3088]
 gi|328923179|gb|EGG30502.1| Transcriptional regulator, LuxR family [gamma proteobacterium
           IMCC3088]
          Length = 220

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             ++A  +LT ++     +  +G  +++IA +L +   T+ A++     KL   +R QA+
Sbjct: 145 DTAAAIASLTPQQLKVASMLVEGLLNKQIAYELNVKEATIKAHMTEIMRKLGVFSRTQAV 204


>gi|327403771|ref|YP_004344609.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327319279|gb|AEA43771.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  D YT++ IAE+L LS  T+  Y  S  +KLD  N    + K +  G
Sbjct: 151 QLTTREKQVLKLIMDEYTTKRIAEELFLSEKTIENYRSSLMLKLDVTNLTGLVKKTLLLG 210

Query: 233 YI 234
            +
Sbjct: 211 LL 212


>gi|307729151|ref|YP_003906375.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307583686|gb|ADN57084.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 210

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEE 193
           + ++ A   +   H    + + D L     + +AA     L+ERE         G    +
Sbjct: 109 DEIVRAIRAVARGHRYLSEAVADTLADNLDKPAAARPHEALSEREFQIFCKLAAGQIPTQ 168

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IAE+L LSV TV+ Y      K+   N       AI+ G I
Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209


>gi|86740248|ref|YP_480648.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86567110|gb|ABD10919.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 156

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L   G ++ E AE L +   TV  Y+ S   K+   NR  A+  A + G
Sbjct: 94  RLTLREMEVLTLVATGCSNVEAAEHLTIRAETVKTYMRSIMRKMGVRNRTAAVHAARQSG 153

Query: 233 YI 234
            +
Sbjct: 154 LL 155


>gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 241

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  N T RE S LQL  +G  ++EIA KL  S+  V  Y+    +K    +R + +  A+
Sbjct: 176 ALHNFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 235

Query: 230 RFGYI 234
               +
Sbjct: 236 ENQLV 240


>gi|113971847|ref|YP_735640.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|113886531|gb|ABI40583.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 201

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            LTERE   L     G T+++I+E + LS+ T+  +      KL+  N  + +
Sbjct: 138 QLTEREQQVLAHVVQGMTNKQISEAMYLSLRTIEVHRAKIMKKLEVSNMAELV 190


>gi|299066090|emb|CBJ37271.1| putative two-component response regulator, transcription regulator,
           LuxR [Ralstonia solanacearum CMR15]
          Length = 238

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LT RE S LQL  +G T+ ++   L LS  T+  Y      KL   N    +  A
Sbjct: 151 STWETLTARERSVLQLVAEGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVGNVTGLVLAA 210

Query: 229 IRFGYI 234
           I  G I
Sbjct: 211 IGLGLI 216


>gi|296158037|ref|ZP_06840870.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295891805|gb|EFG71590.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 228

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 141 LANEVI-IEAHGACYQV-ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
              +++   AH         D L   +       +LT RE   +     G  +++IA ++
Sbjct: 119 RDQDMLDAVAHALAGDAERRDALRSVEDLRRCYESLTPREREVMAFVASGLMNKQIAGEM 178

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           GLS  TV  + G A  K+ A +    + KA   G
Sbjct: 179 GLSEITVKIHRGQAMRKMAARSLADFVLKAEALG 212


>gi|291455100|ref|ZP_06594490.1| response regulator [Streptomyces albus J1074]
 gi|291358049|gb|EFE84951.1| response regulator [Streptomyces albus J1074]
          Length = 222

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
             +  +     L  +++         +    +    ++   +  LT RE   ++L  +G 
Sbjct: 121 AVLAASRGDGDLPADLLGSLLSQVGTLHRGAV---GQQGGPSLGLTPREVDVVRLIAEGL 177

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            + EIA KL  S  TV   +   T +L   NR  A+A A+R GYI
Sbjct: 178 DTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVAFALREGYI 222


>gi|237746871|ref|ZP_04577351.1| two component transcriptional regulator [Oxalobacter formigenes
           HOxBLS]
 gi|229378222|gb|EEO28313.1| two component transcriptional regulator [Oxalobacter formigenes
           HOxBLS]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTER 177
            +R G             L+ A + +          + + L L     ++    + L+ R
Sbjct: 93  SIRAGAQGYLTKESAGSQLVTAIKRVASGRPYISMEVAERLALDIMTPEKELPHKQLSNR 152

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E     +   G +  +IA +L LSV TV+ +      K+D  +  + +  AI    +
Sbjct: 153 EFEIFNMMASGKSITDIATQLHLSVKTVSTHKSRILAKMDMHSLAEIVQYAIAHNLL 209


>gi|114563476|ref|YP_750989.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114334769|gb|ABI72151.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 220

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 23/202 (11%)

Query: 46  RRQQLICELHNYDL--DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ 103
            R  L   L N        +  +              +    P     +  +        
Sbjct: 17  FRNALRLALSNAFEKTQWFEADSAEALQGV------LDQKETPFDLILLDLQMPGSHGYS 70

Query: 104 LSVRLEGGLLPFAGIAFPVR--LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF- 160
             + L         +       +          +S F+  +  + + A      +  D  
Sbjct: 71  TLIHLRTHYPDIPVVVISAHEDINTISRAIHYGSSGFIPKSASMEVLAEALNAVLYGDIW 130

Query: 161 LELFKKRSSAARN-----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           L    +    + +           LT ++   LQ+  +G  +++IA   G+S  T+ A+ 
Sbjct: 131 LPKGTQIVPVSDDPTDKMANRLSDLTPQQYRVLQMFAEGLLNKQIAYDFGVSEATIKAHA 190

Query: 210 GSATVKLDAVNRIQAIAKAIRF 231
            +   KL   NR QA+  A++ 
Sbjct: 191 TAIFRKLGVRNRTQAV-IALQQ 211


>gi|114561787|ref|YP_749300.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333080|gb|ABI70462.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 210

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           T++E   L L   G T+EE+A++L +SV+TV  ++ +   K    NR Q  A A
Sbjct: 155 TKKEQQVLSLILHGLTNEEMAKELNISVNTVKMHVQNIYKKTKIKNRGQLFAFA 208


>gi|78066914|ref|YP_369683.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|115352227|ref|YP_774066.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|116690160|ref|YP_835783.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|134296321|ref|YP_001120056.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|167586726|ref|ZP_02379114.1| response regulator receiver protein [Burkholderia ubonensis Bu]
 gi|170703358|ref|ZP_02894143.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|170733493|ref|YP_001765440.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|171318540|ref|ZP_02907691.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|172061094|ref|YP_001808746.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|254251954|ref|ZP_04945272.1| regulatory protein LuxR [Burkholderia dolosa AUO158]
 gi|77967659|gb|ABB09039.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
 gi|115282215|gb|ABI87732.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria AMMD]
 gi|116648249|gb|ABK08890.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
 gi|124894563|gb|EAY68443.1| regulatory protein LuxR [Burkholderia dolosa AUO158]
 gi|134139478|gb|ABO55221.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
 gi|169816735|gb|ACA91318.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
 gi|170131735|gb|EDT00278.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|171096282|gb|EDT41189.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171993611|gb|ACB64530.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
 gi|325527278|gb|EGD04647.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. TJI49]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++      LT R
Sbjct: 97  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|294499414|ref|YP_003563114.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349351|gb|ADE69680.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
               ++  +     TERETS + L   G +++EI++ L +S  TV  Y+ S   K    +
Sbjct: 139 AATERESKADMTQFTERETSIMTLIAKGLSNKEISKTLFISEGTVANYISSILSKTGLEH 198

Query: 221 RIQAIAK 227
           R Q    
Sbjct: 199 RTQIAIY 205


>gi|302538489|ref|ZP_07290831.1| two component system response regulator [Streptomyces sp. C]
 gi|302447384|gb|EFL19200.1| two component system response regulator [Streptomyces sp. C]
          Length = 226

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L   GDG +++EIA +LG+   TV  ++G+   K  + +R+QA   A R G
Sbjct: 164 RLTGRERDVLAALGDGLSNQEIAARLGIGTGTVKTHVGAILDKTGSASRVQAALLAHRTG 223

Query: 233 Y 233
            
Sbjct: 224 L 224


>gi|238023736|ref|YP_002907968.1| hypothetical protein bglu_2g02680 [Burkholderia glumae BGR1]
 gi|237878401|gb|ACR30733.1| Hypothetical protein bglu_2g02680 [Burkholderia glumae BGR1]
          Length = 355

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 12/226 (5%)

Query: 15  QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            EL   +  I     A     +                 +   D               D
Sbjct: 129 AELIALMRRITGACGAVQCFYHWFMYDERSGEVSAHQLLIGG-DPAWAQRYVDRHWYLND 187

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK-NGYVI 133
             + H      P+   S+         G    R        +    P         G + 
Sbjct: 188 PAVAHAQDDTRPLRGSSL-----AMPPGHWLNRQGPLHGMRSHQFHPAHRRDVATVGVLH 242

Query: 134 FTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            ++       E  + AH         +++   +   ++  +A  +L  RE   L+L   G
Sbjct: 243 VSTAAEPPGGEEALWAHRRPLRGLANELLEWQVLRRRRELAATLSLEARELRALRLVARG 302

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++  +A +LG++   V     +   KLD+ +   +  KA + G +
Sbjct: 303 GSARHVAAELGVTERAVYQLFTAINRKLDSEHIKVSANKARQLGLL 348


>gi|227819625|ref|YP_002823596.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227338624|gb|ACP22843.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 266

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +     A   T R+   +Q    G  ++ IA  L L   TV  ++ +   KL A NR +
Sbjct: 180 EELARPGAGMFTHRQEEVIQELRRGKANKIIAYDLNLHESTVKVHIRNIMKKLGATNRTE 239

Query: 224 AIAKAIRF 231
              KA + 
Sbjct: 240 VAYKASQM 247


>gi|149370972|ref|ZP_01890567.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355758|gb|EDM44316.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 400

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           NL+ER+   + L   G T++EI   L +S +TV  +L      L   NR + 
Sbjct: 349 NLSERQNQIIVLVKQGKTNKEIGAALFISENTVKYHLKIIYDILGIGNRTEL 400


>gi|186476230|ref|YP_001857700.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184192689|gb|ACC70654.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++A R   LT R
Sbjct: 96  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESSSVQQQRAAAERLGKLTAR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206


>gi|23006356|ref|ZP_00048713.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 180

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQV-----ITDFLELFKKRSSAARNLTERETSCLQLA 185
             +  ++  +L    +     A   V     +     L +   ++  +L+ RE + L+  
Sbjct: 38  LEVVIADCAVLPMSFLGRLCLAADPVRAPGPVAALTGLQRADGTSLSSLSSREVNILEGL 97

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +++ IA  L ++  TV  ++ +   K+   NR QA   A+  G +
Sbjct: 98  ALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGIV 146


>gi|295699319|ref|YP_003607212.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438532|gb|ADG17701.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 247

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +     L   +     NL+ R+   ++L   G+T++ IA  LG++  TV  +L      L
Sbjct: 166 LRQMPSLQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARDLGVAEGTVKVHLSVIFRAL 225

Query: 217 DAVNRIQAIAKAIRFGYI 234
              NR  AI  A+  G++
Sbjct: 226 GVHNRSTAI--AVINGWL 241


>gi|260913907|ref|ZP_05920381.1| tetrathionate reductase regulon response regulator [Pasteurella
           dagmatis ATCC 43325]
 gi|260631994|gb|EEX50171.1| tetrathionate reductase regulon response regulator [Pasteurella
           dagmatis ATCC 43325]
          Length = 192

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+++E   L+L   GY + +IAE L +SV TV  +      K+ A    + I K  + 
Sbjct: 133 EQLSKKELEILELLIQGYINRQIAETLNISVRTVEVHRSHIMEKMQAQTIAELIYKTAQL 192


>gi|238023585|ref|YP_002907817.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878250|gb|ACR30582.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 215

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 115 FAGIAFPVR--LGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFK 165
             G   P+    G       +   +   +         + +++      ++        +
Sbjct: 73  RRGATLPIIFVSGHGDIPMSVRAMQNGAIDFVEKPYNSQQMLDRVQNAMKLAMQRHAGDR 132

Query: 166 KRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           +R        +LT RE   L+   DG  S++IA +L +SV TV+ +  S   KL   +  
Sbjct: 133 RRLELRQRIESLTAREREVLRGVIDGKGSKKIASELSISVKTVDVHRASIKEKLGVASIA 192

Query: 223 QAIA 226
             + 
Sbjct: 193 SLVR 196


>gi|297560982|ref|YP_003679956.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845430|gb|ADH67450.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 220

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 33/70 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++  +A   L+ RE         G T+ EIA +L +SV TV A++ +   KLD  NR Q
Sbjct: 150 HERARTALARLSPREHEVALAVARGRTNAEIAAQLYMSVATVKAHVSNVLAKLDMDNRTQ 209

Query: 224 AIAKAIRFGY 233
               A   G 
Sbjct: 210 IALLAHDAGL 219


>gi|256377313|ref|YP_003100973.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921616|gb|ACU37127.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 208

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   ++    G  + EI + L LS+ TV  +L +A  K  A NR++  A A R   
Sbjct: 146 LTPRERDVVREVARGLGNREIGDALHLSLSTVKTHLAAAQGKTGARNRVELAAWAFRARL 205

Query: 234 I 234
           +
Sbjct: 206 V 206


>gi|254515317|ref|ZP_05127378.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3]
 gi|219677560|gb|EED33925.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3]
          Length = 203

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
            +      ++          RS      LT RE     L G GY + E+AE LG+S  TV
Sbjct: 115 RDLLQRISELGKRVDAQSADRSPRHFEGLTPREEEVALLVGRGYNNRELAEALGVSERTV 174

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231
            A L S   KL   +R+Q      R 
Sbjct: 175 KANLTSIFDKLGLRDRVQLALYVNRL 200


>gi|149907604|ref|ZP_01896351.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
 gi|149809274|gb|EDM69203.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
          Length = 197

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
                L+ R+ S LQL   G ++ ++A++L +S  TV  +  S    ++A    + I  A
Sbjct: 131 PDKPKLSSRQISVLQLLAQGKSARQVADELFISPRTVEFHKYSIMKLVNAKTSAELIQYA 190

Query: 229 IRFGY 233
           +  G 
Sbjct: 191 LNHGL 195


>gi|170738965|ref|YP_001767620.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168193239|gb|ACA15186.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 221

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT ++   L +  +G  +++IA +L +S  TV A++ +   KL   +R QA+  + R G
Sbjct: 153 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIASSRIG 211


>gi|170722540|ref|YP_001750228.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169760543|gb|ACA73859.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGACYQVITDF-LELFKKRSSAARNL 174
           FP RL        +     L    + I  A         Q+     L+ F+ + S    L
Sbjct: 89  FPTRLMQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLALKSFQPQGSPFDAL 148

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +ERE     +       + I++KL LS  TVN Y      KL   + ++    A+R G +
Sbjct: 149 SEREIQIALMIVGCQKVQLISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 208


>gi|111017809|ref|YP_700781.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
           jostii RHA1]
 gi|110817339|gb|ABG92623.1| possible protein kinase/ transcriptional regulator, LuxR family
           protein [Rhodococcus jostii RHA1]
          Length = 773

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
            R       +       L +  E       A    + +           +  LT RE   
Sbjct: 665 ARGAIGDRAFEAEFGRGLGMRFEE------AAGYALDESGPTAAAVGPGSTPLTRRERQV 718

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +L  +G T+  IA+KL +S  T   ++     KL   +R Q  A  I  
Sbjct: 719 AELVAEGLTNRAIADKLVISQRTAQGHVEHILSKLGFTSRTQIAAWVIEH 768


>gi|16264139|ref|NP_436931.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
 gi|307300008|ref|ZP_07579793.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307316639|ref|ZP_07596082.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15140264|emb|CAC48791.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
 gi|306897837|gb|EFN28580.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904897|gb|EFN35480.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 259

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 48/212 (22%), Gaps = 27/212 (12%)

Query: 38  INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETV 97
           I        R+    +   Y  +           + D F  ++       I         
Sbjct: 39  ITVTRYSATRKPEFVKHRGYSDEMVARYLDTYYVF-DPFYAYWRLNRRAGIVPLKSLADD 97

Query: 98  IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
               G+              +   +  G      +       M ++  +         V 
Sbjct: 98  APKRGRYIAEFLAQSEICDEVGILLEDGDDWCLGIFLDRSTSMFSDGEVAALCSRFP-VF 156

Query: 158 TDFLELFKKRSSA-------------------------ARNLTERETSCLQLAGDGYTSE 192
                   +                               +LT RE   + L   G+ + 
Sbjct: 157 EALHATDTRTRDPNLRRTSTPEAMGEAPVSAVQASLILWPDLTVRERELVALILQGHPNA 216

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            IA +LG++  TV  +      KLD     + 
Sbjct: 217 TIASRLGIAPGTVKNHRARIYEKLDITTEREL 248


>gi|119715190|ref|YP_922155.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535851|gb|ABL80468.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 216

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           + +      +     LTE+E   L    +G T+ +I E++ L+  TV  Y+ S   KL  
Sbjct: 141 ERVRHPPTTAPELAELTEQELKLLGYIAEGLTNRQIGERMYLAEKTVKNYVSSILAKLGL 200

Query: 219 VNRIQAIAKAIRF 231
             R QA   A + 
Sbjct: 201 ERRTQAAVLASKL 213


>gi|302035963|ref|YP_003796285.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300604027|emb|CBK40359.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 218

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           G          ++  +     R+L + +E   L L   G T++EIA +LGLS  TV  YL
Sbjct: 135 GVTRHTFAYLRKVADREPERGRHLLSPQERRLLPLIAQGKTNKEIAAELGLSDKTVKNYL 194

Query: 210 GSATVKLDAVNRIQAIAK 227
            +   KL    R QA A 
Sbjct: 195 ANVYSKLHLSRRSQAAAF 212


>gi|298244596|ref|ZP_06968402.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552077|gb|EFH85942.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 732

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 155 QVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
           +   +   L  +   +     L+  E   L L   G +++EIA +L +SV+TV  ++   
Sbjct: 640 EAQRELDRLEGRVETNGLVEPLSAHEERVLHLLIAGLSNQEIASELIISVNTVKYHIKHL 699

Query: 213 TVKLDAVNRIQAIAKAIRFGY 233
             KL   NR+QA   A +   
Sbjct: 700 YQKLGVSNRLQASEAARQLHL 720


>gi|291007045|ref|ZP_06565018.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 175

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 155 QVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            ++ +F  + +   +        LT RE   L    DG + EEIA+KL  S  T+   L 
Sbjct: 92  ALVEEFERIREHVLAPRDLTMHGLTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILY 151

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               +L   NR  A+A AIR G I
Sbjct: 152 QFMKRLGLRNRAHAVAYAIRLGII 175


>gi|285016912|ref|YP_003374623.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472130|emb|CBA14637.1| putative two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 221

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              ++     R LT ++   LQ+ G G  +++IA  L +S  T+ A++ +   KL   NR
Sbjct: 138 RAEREVGQRLRELTPQQIRVLQMLGAGRLNKQIAYDLSVSEATIKAHVTAILRKLGVTNR 197

Query: 222 IQAIAKA 228
            QA+  A
Sbjct: 198 TQAVLLA 204


>gi|254491454|ref|ZP_05104633.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224462932|gb|EEF79202.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                L+      +  + LT RE    +L  +G   ++IA +L +   TV  Y  S   K
Sbjct: 133 AHKVALQSLAGDDNPTQRLTSREFEVFRLLAEGKLVDDIASRLNIGQKTVANYQTSLKQK 192

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   + +  +  A+++G I
Sbjct: 193 LGIHSPVDLVRLAMKYGVI 211


>gi|311745162|ref|ZP_07718947.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
 gi|126577683|gb|EAZ81903.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
          Length = 220

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  S     LT RE   L L   G  + EIA++L +S  T   +  +   KL+  N ++ 
Sbjct: 151 EPVSEELAALTNREKQILDLILKGKGNNEIADELKISKRTAEVHRFNLMKKLNVKNLVEL 210

Query: 225 IAKAIRFGYI 234
             K+     I
Sbjct: 211 TNKSKELHLI 220


>gi|120556773|ref|YP_961124.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
 gi|120326622|gb|ABM20937.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 301

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT RE+  L    +G T+ EI + L +S  TVN +L     K++  NR  A A AIR
Sbjct: 240 LTLRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQVFRKMNVENRTAAAANAIR 296


>gi|310765952|gb|ADP10902.1| LuxR family regulatory protein [Erwinia sp. Ejp617]
          Length = 208

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT +E   ++L   GYT  EIA +   ++ TV+    +A  +L   + ++ I  A   G
Sbjct: 147 GLTPKELEVIRLFSSGYTLSEIARRQNRTISTVSTQKYNAMRRLGVSSNVELIRYAYAQG 206

Query: 233 YI 234
            I
Sbjct: 207 LI 208


>gi|307826600|ref|ZP_07656720.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
 gi|307732395|gb|EFO03310.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
          Length = 171

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           NLT RE   L+L   GY ++EIA+ L +S+ TV  +  +   K +A N    ++ A + G
Sbjct: 26  NLTSREAQLLKLIAAGYKNKEIADSLCISLKTVETHRATLMRKFNAHNVATLLSVANQAG 85


>gi|302521038|ref|ZP_07273380.1| two component system response regulator [Streptomyces sp. SPB78]
 gi|302429933|gb|EFL01749.1| two component system response regulator [Streptomyces sp. SPB78]
          Length = 239

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L L   G ++  IAE+L LS  TV AY+     +L   NR++A   A   G 
Sbjct: 174 LTPREREVLVLLAGGLSNAGIAERLRLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 233


>gi|259906728|ref|YP_002647084.1| LuxR family regulatory protein [Erwinia pyrifoliae Ep1/96]
 gi|224962350|emb|CAX53805.1| Bacterial regulatory protein, LuxR [Erwinia pyrifoliae Ep1/96]
 gi|283476513|emb|CAY72328.1| Fimbriae Z protein [Erwinia pyrifoliae DSM 12163]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT +E   ++L   GYT  EIA +   ++ TV+    +A  +L   + ++ I  A   G
Sbjct: 153 GLTPKELEVIRLFSSGYTLSEIARRQNRTISTVSTQKYNAMRRLGVSSNVELIRYAYAQG 212

Query: 233 YI 234
            I
Sbjct: 213 LI 214


>gi|111027158|ref|YP_709136.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110825697|gb|ABH00978.1| probable transcriptional regulator, LuxR family [Rhodococcus jostii
           RHA1]
          Length = 427

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 163 LFKKRSSAARNL----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           L    +     L      RE   L     G  ++ IA +LG+S  T+  ++ S   KLD 
Sbjct: 344 LDPPAARPGEQLLSTLNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDV 403

Query: 219 VNRIQAIAKAIRFGY 233
            NR +A A  I+ G 
Sbjct: 404 ANRGEAGAIGIQAGI 418


>gi|119715573|ref|YP_922538.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119536234|gb|ABL80851.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 188

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 38/75 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L        A+  LT RE   L L   G ++ EIAE L LS+++V  Y+ SA  K+  
Sbjct: 103 HALPGSGDPLGASVALTAREVEVLALITQGMSNPEIAEHLYLSINSVKTYIRSAYAKIGV 162

Query: 219 VNRIQAIAKAIRFGY 233
            +R +A+A  +  G+
Sbjct: 163 TSRARAVAWCLLHGF 177


>gi|330810333|ref|YP_004354795.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378441|gb|AEA69791.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 115

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   L+    G  ++++A  L +S  TV  ++ S   KL+   R  A  KA + G 
Sbjct: 54  LTGRECRILREISVGANNKQVARLLEISPSTVRTHVESIFRKLECSTRAAATFKAAKLGL 113

Query: 234 I 234
           I
Sbjct: 114 I 114


>gi|104782489|ref|YP_608987.1| response regulator [Pseudomonas entomophila L48]
 gi|95111476|emb|CAK16196.1| response regulator GacA (Global antibiotic and cyanide control
           protein, LuxR/UhpA family) [Pseudomonas entomophila L48]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEA----HGACYQVITDF-LELFKKRSSAARNL 174
           FP RL        +     L    + I  A       C Q+     L+ F+ + S    L
Sbjct: 89  FPTRLLQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYICPQIAQQLALKSFQPQGSPFDAL 148

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +ERE     +       + I++KL LS  TVN Y      KL   + ++    A+R G +
Sbjct: 149 SEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 208


>gi|85712393|ref|ZP_01043443.1| Response regulator, LuxR family protein (CheY, HTH domains)
           [Idiomarina baltica OS145]
 gi|85693836|gb|EAQ31784.1| Response regulator, LuxR family protein (CheY, HTH domains)
           [Idiomarina baltica OS145]
          Length = 216

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            KR +    L++RE   +Q+ G G    EIAE L +S  T+N +      KL+  + +Q 
Sbjct: 139 DKRRNIVEQLSDRELQVMQMIGRGVRVSEIAEHLCISSKTINTFRYRIFAKLNINSDVQL 198

Query: 225 IAKAIRFGYI 234
              A+R G +
Sbjct: 199 SHLALRAGLV 208


>gi|300716380|ref|YP_003741183.1| two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
 gi|299062216|emb|CAX59333.1| Two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
          Length = 205

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 124 LGFHKNGYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETS 180
           L   + G   F ++   L+     I+           +        +S     L++RE S
Sbjct: 90  LRCQQTGADGFVTKTDDLSELVDAIKLVMRGISYFPQYNRFIAPTTQSEQLEQLSDRELS 149

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L +   G  +++IA++L LS  T++ Y     +KL+A   I+ I  A     I
Sbjct: 150 VLMMLAKGMGNKQIADQLVLSEKTISTYKHRLKIKLNAATLIELIDFARNNNLI 203


>gi|323529867|ref|YP_004232019.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323386869|gb|ADX58959.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 251

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            + +     L   +     NL+ R+   ++L   G+T++ IA +LG++  TV  +L    
Sbjct: 167 AEPVAQLQALQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARELGVAEGTVKVHLSVIF 226

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
             L   NR  AI  A+  G++
Sbjct: 227 RALGVHNRSTAI--AVVNGWL 245


>gi|290963094|ref|YP_003494276.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652620|emb|CBG75753.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LTERE   L L  +G ++ EI   + LS  TV  ++ +   KL    R++A   A R G 
Sbjct: 150 LTERERQVLVLVAEGLSNAEIGTVVHLSEGTVKDHVSAILGKLGVAGRVRAALLAQRAGL 209

Query: 234 I 234
           +
Sbjct: 210 L 210


>gi|269928442|ref|YP_003320763.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787799|gb|ACZ39941.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 799

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 35/106 (33%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           VR       +    ++   L     +E              L ++  +    LT RE   
Sbjct: 678 VRGMLDDAAFEPAWTQGRALTLAEAVERAQRLLATPPGPSRLHRRPRTQLGGLTRREYEV 737

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 G T+ EIA  L +   TV  ++ +   KL   +R Q  A 
Sbjct: 738 ALHVALGKTNREIAADLSIGEKTVEMHVSNCLTKLGLRSRAQLAAW 783


>gi|229491400|ref|ZP_04385224.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
 gi|229321685|gb|EEN87482.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
          Length = 367

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 2/108 (1%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                 + +    +   ++  +  G   ++           S     LT RE   L    
Sbjct: 261 RGVHAELRSVAQTVTDTDLQTKLRGLSQRLANLLRPTADAESDVT--LTPREVDVLSQVA 318

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T+ E  ++L L   TV +YL SA  KLDA +R +A+  A R G +
Sbjct: 319 LGCTNIEAGQRLSLRPETVKSYLRSAMGKLDASSRHEAVVTARRLGLL 366


>gi|254392355|ref|ZP_05007538.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442209|ref|ZP_08216943.1| LuxR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706025|gb|EDY51837.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 222

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H              ++       L+ RE   L L G+G ++ +   +L +S  TV  Y+
Sbjct: 136 HVVDQLATGHAASRNERARERVAQLSARERDVLSLLGEGLSNADAGRRLHMSEATVKTYV 195

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL+  NR+QA   A   G 
Sbjct: 196 SRILAKLECENRVQAALLARDAGL 219


>gi|127511543|ref|YP_001092740.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126636838|gb|ABO22481.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 199

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                +P I     ++ ++     L +    G         P+ +   + G   F     
Sbjct: 57  ILDSRMPAISGQALQQELLTKQSPLGIIFLTGHGD-----LPMAVNAFRQGACDFF--QK 109

Query: 140 MLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
            ++ + +  A        Q   + L+L    +     L++RE   L+L   G T+++++E
Sbjct: 110 PVSGQALAAAIDKSMLHSQKAFEALQLSHNLA----TLSDREHQVLELLIQGKTNKQLSE 165

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L LS+ T+  +  +   KL   N  +    
Sbjct: 166 ALFLSLRTIEVHRSNVMKKLKVHNLAELAKY 196


>gi|117922129|ref|YP_871321.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|117614461|gb|ABK49915.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 201

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            LTERE   L     G T+++I+E + LS+ T+  +      KL+  N  + +
Sbjct: 138 QLTEREQQVLAHVVQGMTNKQISEAMYLSLRTIEVHRAKIMKKLEVSNMAELV 190


>gi|331087369|gb|AEC53455.1| two-component system response regulator [Actinosynnema pretiosum
           subsp. auranticum]
          Length = 205

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                V    L  + + S++A    LT RE   ++    G  + EI + L LS+ TV  +
Sbjct: 118 LISPDVTLRVLRSWTRPSASADVGLLTPRERDVVREVARGLGNREIGDALHLSLSTVKTH 177

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           L +A  K  A NR++  A A R   +
Sbjct: 178 LAAAQGKTGARNRVELAAWAFRARLV 203


>gi|295098454|emb|CBK87544.1| Response regulator [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 205

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           S  L+ + E  +         + +   L ++      +LT RE   L+LA  G  +++IA
Sbjct: 107 SSALIGSIESALRLAQHNAARVKEHYALKQRHL----SLTPREHEVLELAVSGKLNKQIA 162

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            +LG+S  TV  +      K+   +  + + +A+  
Sbjct: 163 AELGVSEITVKVHRRRVMEKMQVRSVAELV-RAVER 197


>gi|167563375|ref|ZP_02356291.1| response regulator receiver protein [Burkholderia oklahomensis
           EO147]
 gi|167570543|ref|ZP_02363417.1| response regulator receiver protein [Burkholderia oklahomensis
           C6786]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++      LT R
Sbjct: 97  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|163745597|ref|ZP_02152957.1| DNA-binding response regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161382415|gb|EDQ06824.1| DNA-binding response regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 206

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L+ERE   L+      +++EIA  L L   T+  ++ +   KLDA NR  A   A   
Sbjct: 144 KALSERERQVLRGLMIAQSNKEIARDLDLQEVTIKLHVKTLCRKLDAKNRTDAAIIARDA 203

Query: 232 GYI 234
           G++
Sbjct: 204 GFV 206


>gi|29570535|gb|AAO85385.1| response regulator [Pseudomonas fluorescens]
 gi|29825730|gb|AAO92275.1| response regulator GacA [Pseudomonas fluorescens]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172
           FP RL      GY+   +  E ++ A   +          I   L L     ++  S   
Sbjct: 89  FPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFD 148

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ERE     +  + +  + I++KL LS  TVN Y      KL   + ++    A+R G
Sbjct: 149 SLSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHG 208

Query: 233 YI 234
            +
Sbjct: 209 MV 210


>gi|87121275|ref|ZP_01077165.1| regulatory protein, LuxR [Marinomonas sp. MED121]
 gi|86163432|gb|EAQ64707.1| regulatory protein, LuxR [Marinomonas sp. MED121]
          Length = 332

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 10/129 (7%)

Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQV 156
                 L          + P+ +        + T       + +++++++ E       +
Sbjct: 199 PSFMTLLYEHFSRRNIYSLPIDIPDALAHAALSTEVDPDRLYTVISHDLVFELT-----L 253

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   +++  +       L+ RE   +QL   G T +E+A+KL L+  T++ +L     KL
Sbjct: 254 MGSLVKVGLRPLGPLDKLSAREKEIVQLVCKGLTFKEVAKKLQLAPSTISNHLYRVYDKL 313

Query: 217 DAVNRIQAI 225
              +R +  
Sbjct: 314 AISSRSELA 322


>gi|300691337|ref|YP_003752332.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum PSI07]
 gi|299078397|emb|CBJ51047.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum PSI07]
          Length = 210

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176
            P+ +   K G V F           + E                +++ +A      LT 
Sbjct: 97  VPMAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARTEDSAAREQKAAKDLLSRLTT 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           RE   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|256394916|ref|YP_003116480.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361142|gb|ACU74639.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 895

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 50/174 (28%), Gaps = 6/174 (3%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
               +       T     L         +           ES  + + R E   +    +
Sbjct: 708 AAVAERAPQQPSTLRPFALRAGMWAHAALGEHEAALTRAQESVREFTARGERIEVCRTLL 767

Query: 119 A---FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA---AR 172
           A   F +R G             L+              +  +    L   +      + 
Sbjct: 768 AASEFALRAGRADLVAGWLDRVALLAEQCGAGRLATEAVRHRSRLAALADAQPDPQSTSA 827

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            LT RE     L   G T+  IAEKL LSV TV ++L     KLD  NR     
Sbjct: 828 PLTAREREIANLVSTGMTNTAIAEKLFLSVRTVESHLRQIYRKLDVPNRAALTR 881


>gi|182624556|ref|ZP_02952339.1| salavaricin two-component response regulator [Clostridium
           perfringens D str. JGS1721]
 gi|177910364|gb|EDT72745.1| salavaricin two-component response regulator [Clostridium
           perfringens D str. JGS1721]
          Length = 201

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LTERE   L L G G   + IA+ + +S  T+  ++ +   KL+  + I+AI KA +
Sbjct: 137 ADLLTEREKEILSLLGKGERRKNIAKTIYISERTLTNHIQNILEKLEVDSTIKAIIKAQK 196

Query: 231 FGYI 234
            GYI
Sbjct: 197 LGYI 200


>gi|126652652|ref|ZP_01724813.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus sp. B14905]
 gi|169829490|ref|YP_001699648.1| germination protein [Lysinibacillus sphaericus C3-41]
 gi|299535535|ref|ZP_07048856.1| germination protein [Lysinibacillus fusiformis ZC1]
 gi|126590501|gb|EAZ84619.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus sp. B14905]
 gi|168993978|gb|ACA41518.1| Germination protein [Lysinibacillus sphaericus C3-41]
 gi|298728735|gb|EFI69289.1| germination protein [Lysinibacillus fusiformis ZC1]
          Length = 73

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           LT RE     L     T+ +IAE+LG+S  TV  ++ +   KL   NR QA+ + +R 
Sbjct: 10  LTNREREIFALLLAEKTTRDIAEQLGISEKTVRNHISNTIQKLGVTNRSQALIELLRL 67


>gi|331696106|ref|YP_004332345.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950795|gb|AEA24492.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 446

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 17/222 (7%)

Query: 14  LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73
           + ++  R       ++    AL  +      P    L      +  +  +          
Sbjct: 210 VDDVRTRFDGWATGVRLAGVALRGVGGCGPLPAS--LTEVEEYFSAELLERVTS----AQ 263

Query: 74  DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133
              L H       +     +  T    +G+    L             +R          
Sbjct: 264 RRLLLHCGVLDE-VTPDGAEALTGSPGAGEELRALAAS-------TLFLRRTPRGFRIHP 315

Query: 134 FTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYT 190
                   +L  E          +     +         A   L+ RE + L+      T
Sbjct: 316 ALRPVLHDVLVREEPGMLPVLAERAHRAAVRDDAGPVLVAGEPLSPRELAVLRALAGPLT 375

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             EIA ++ LS +TV  ++ S   KL    R  A+      G
Sbjct: 376 LREIAAEMHLSHNTVKTHVRSVFRKLRVHERRAAVVAGRERG 417


>gi|300870842|ref|YP_003785713.1| two-component system regulator [Brachyspira pilosicoli 95/1000]
 gi|300688541|gb|ADK31212.1| two-component system regulator [Brachyspira pilosicoli 95/1000]
          Length = 320

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L +K      NLT+RE   L     G T++EI+    +S++TVN ++ +   K    NR+
Sbjct: 252 LEEKIEVNDFNLTKREKQILSYLLSGKTNKEISLIFDISLNTVNNHVANIYYKSGVKNRV 311

Query: 223 QAIAK 227
           + + K
Sbjct: 312 ELVNK 316


>gi|224538294|ref|ZP_03678833.1| hypothetical protein BACCELL_03185 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520079|gb|EEF89184.1| hypothetical protein BACCELL_03185 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 204

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   +     G T++ IA++L LS+HTV  +  +   KL   +       AI    
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADQLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 234 I 234
           +
Sbjct: 195 V 195


>gi|197337614|ref|YP_002157683.1| transcriptional regulatory protein FixJ [Vibrio fischeri MJ11]
 gi|197314866|gb|ACH64315.1| transcriptional regulatory protein FixJ [Vibrio fischeri MJ11]
          Length = 205

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 8/143 (5%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
           +I +  + E  GQ    L       + ++     G       +   +             
Sbjct: 58  AILDSRMPELRGQDVHELLKQ--QNSPLSVIFLTGHGDIPMAVDALKAGAADFFQKPVDG 115

Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              +  I + L   +KR  +         LT RE   L+L   G  ++++A+ + +S+ T
Sbjct: 116 EVLFTAIQNGLTASEKRYKSQDVHRAYFTLTAREQEVLKLIVQGMKNQQMADSMCVSLRT 175

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           +  +  +   KL   + +  I +
Sbjct: 176 IEVHRSNLMKKLGVNSVVDLIMR 198


>gi|189468008|ref|ZP_03016793.1| hypothetical protein BACINT_04402 [Bacteroides intestinalis DSM
           17393]
 gi|189436272|gb|EDV05257.1| hypothetical protein BACINT_04402 [Bacteroides intestinalis DSM
           17393]
          Length = 204

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   +     G T++ IA++L LS+HTV  +  +   KL   +       AI    
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADQLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 234 I 234
           +
Sbjct: 195 V 195


>gi|167751935|ref|ZP_02424062.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216]
 gi|167660176|gb|EDS04306.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216]
          Length = 203

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
              +++     +           L+ERE   L     G T+ EIA++  +S+HTV ++  
Sbjct: 113 RVHHKLRQALEQTRTTAQPEGYELSEREREILVAVARGLTNREIADQYFISIHTVISHRK 172

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
           + T K            A+    I
Sbjct: 173 NITRKTGIKTIAGLTVYALLNNMI 196


>gi|241518604|ref|YP_002979232.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863017|gb|ACS60681.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 864

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
             +A  V     G   +V         K + A   LT RE   L+    G ++ EIA  L
Sbjct: 770 SAVAQHVRAIIRGRLGRVAARGPRASTKANPA--GLTTREMDVLRWVDLGKSNGEIAALL 827

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +S  TV+ ++ S   KL+A  R  A + A   G +
Sbjct: 828 FVSAKTVDHHVSSILAKLNAKTRTAAASHARSRGLL 863


>gi|124265956|ref|YP_001019960.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258731|gb|ABM93725.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 919

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 36/101 (35%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190
           +          A             +           +     L+ RE   + L  +G +
Sbjct: 819 WQALAPRLRCPAAAQARLRGRLAAWLAEGPRAAVADAAPPDDPLSAREREVMALLAEGQS 878

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++ IA  LGLS+HTV  ++ +   KL   +R QA A   R 
Sbjct: 879 NKLIARALGLSLHTVKRHVANILTKLALDSRTQAAAYWHRR 919


>gi|124003451|ref|ZP_01688300.1| transcriptional regulator, LuxR family protein [Microscilla marina
           ATCC 23134]
 gi|123991020|gb|EAY30472.1| transcriptional regulator, LuxR family protein [Microscilla marina
           ATCC 23134]
          Length = 235

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 28/62 (45%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   + L   GY + EI E+L +S  TV  Y  +   KL+    +  I  A  F 
Sbjct: 174 ALTPREKEIITLLALGYQNNEIGEQLFISKATVEQYRKNLKRKLEVRRFVDLIRFAQAFD 233

Query: 233 YI 234
            I
Sbjct: 234 LI 235


>gi|91784262|ref|YP_559468.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91688216|gb|ABE31416.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
 gi|99652808|dbj|BAE94657.1| response regulator [Burkholderia xenovorans LB400]
          Length = 214

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++A R   LT R
Sbjct: 96  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESTSVQQQRAAAERLGKLTAR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206


>gi|325527607|gb|EGD04913.1| Two component LuxR family transcriptional regulator [Burkholderia
           sp. TJI49]
          Length = 263

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS--AARNL 174
           L    +GYV+    F  L   + +   G        C  ++  F+   +  +   A   L
Sbjct: 101 LRAGVDGYVLKDVSFDELLLAMRMVMQGKRHLSAEVCGYMVDSFVTGREAPAPRKAWDVL 160

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE S L+L  +G T+ ++ + L LS  T+  Y  S   KL   N  + +  A+  G +
Sbjct: 161 TARERSVLKLIAEGRTNRQVGQYLNLSPKTIEKYRASMMHKLHLANLTELVLVAMNMGLL 220


>gi|293607167|ref|ZP_06689509.1| LuxR family sensory box transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814501|gb|EFF73640.1| LuxR family sensory box transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 508

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYT 190
           +E L     V+ +       +I    +L +   ++        LT RE   L L   G+ 
Sbjct: 391 TELLAAIEAVMQDTSWFSRGIIEKLAQLRQPAPASRDVAELAQLTTREREVLGLLCQGHD 450

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            + IA+ L LS +TV  ++ +   K+    R  AI  A   G 
Sbjct: 451 DDGIAKALKLSRNTVRNHVATIYSKIGVHRRSAAIVWARDRGI 493


>gi|289751092|ref|ZP_06510470.1| predicted protein [Mycobacterium tuberculosis T92]
 gi|289691679|gb|EFD59108.1| predicted protein [Mycobacterium tuberculosis T92]
          Length = 219

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 131 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 190

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL   +R+Q   +A   G
Sbjct: 191 YTKLGLSSRLQLAQQAAHRG 210


>gi|254285405|ref|ZP_04960370.1| response regulator VieA [Vibrio cholerae AM-19226]
 gi|150424677|gb|EDN16613.1| response regulator VieA [Vibrio cholerae AM-19226]
          Length = 584

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 115 FAGIAFPVRLG-------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           + G    +  G             V+  +  +  ++ ++ +A  +         EL +  
Sbjct: 469 YRGALLVLHDGLTAEIQQDDSKAIVVKANTLMETSSRILQQAQQSNVHPQAQQEELAQ-- 526

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 L+ERE +  ++  +G T++EIA +L ++  TV+ Y      KL   + ++ +  
Sbjct: 527 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSVMELVRF 580


>gi|120437806|ref|YP_863492.1| LuxR family transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117579956|emb|CAL68425.1| LuxR family transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 267

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +++RE   +     G  +E+IA  L LS HTV  +  +   K    N  + +AK +  
Sbjct: 202 EIISDREKEIVIRFSRGLNAEQIATDLNLSPHTVKTHRRNVLQKSGCTNTTELVAKCLTS 261

Query: 232 GYI 234
           G I
Sbjct: 262 GII 264


>gi|90415637|ref|ZP_01223571.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium
           HTCC2207]
 gi|90332960|gb|EAS48130.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium
           HTCC2207]
          Length = 302

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
              G   P+RL       ++   E      E ++    A      + L            
Sbjct: 188 LAEGAKQPLRLEDLAQPLLVTAQESEDAD-ERLLVLELANKPNDEELLREKFG------- 239

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT RE   L     G T+ EIA  L  S  T N +L     KL+  NR  A A ++R
Sbjct: 240 LTAREAEVLTWISKGKTNHEIAIILDFSPRTANKHLEQIFRKLNVENRTTAAAVSLR 296


>gi|53719913|ref|YP_108899.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|53724159|ref|YP_103343.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           ATCC 23344]
 gi|76811469|ref|YP_334134.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1710b]
 gi|121601447|ref|YP_993544.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           SAVP1]
 gi|124386548|ref|YP_001029028.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10229]
 gi|126438707|ref|YP_001059640.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 668]
 gi|126448807|ref|YP_001081052.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10247]
 gi|126452394|ref|YP_001066923.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134277393|ref|ZP_01764108.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|167000626|ref|ZP_02266437.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|167720369|ref|ZP_02403605.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
 gi|167739362|ref|ZP_02412136.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167816577|ref|ZP_02448257.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167824972|ref|ZP_02456443.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167846490|ref|ZP_02471998.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167895067|ref|ZP_02482469.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|167903453|ref|ZP_02490658.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911704|ref|ZP_02498795.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167919702|ref|ZP_02506793.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217420684|ref|ZP_03452189.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226195476|ref|ZP_03791064.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813035|ref|YP_002897486.1| transcriptional regulatory protein FixJ [Burkholderia pseudomallei
           MSHR346]
 gi|238561635|ref|ZP_04609684.1| transcriptional regulatory protein FixJ [Burkholderia mallei GB8
           horse 4]
 gi|242316741|ref|ZP_04815757.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254178707|ref|ZP_04885362.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|254184353|ref|ZP_04890943.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254191386|ref|ZP_04897890.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195951|ref|ZP_04902377.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254200301|ref|ZP_04906667.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|254209377|ref|ZP_04915723.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|254260594|ref|ZP_04951648.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254297016|ref|ZP_04964469.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|254357951|ref|ZP_04974224.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|52210327|emb|CAH36306.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52427582|gb|AAU48175.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 23344]
 gi|76580922|gb|ABA50397.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710b]
 gi|121230257|gb|ABM52775.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           SAVP1]
 gi|124294568|gb|ABN03837.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10229]
 gi|126218200|gb|ABN81706.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 668]
 gi|126226036|gb|ABN89576.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|126241677|gb|ABO04770.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10247]
 gi|134251043|gb|EBA51122.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|147749897|gb|EDK56971.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|147750150|gb|EDK57221.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|148027078|gb|EDK85099.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|157807044|gb|EDO84214.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157939058|gb|EDO94728.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699746|gb|EDP89716.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|169652696|gb|EDS85389.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|184214884|gb|EDU11927.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217396096|gb|EEC36113.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225932436|gb|EEH28435.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237502844|gb|ACQ95162.1| transcriptional regulatory protein FixJ [Burkholderia pseudomallei
           MSHR346]
 gi|238524253|gb|EEP87687.1| transcriptional regulatory protein FixJ [Burkholderia mallei GB8
           horse 4]
 gi|242139980|gb|EES26382.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|243063436|gb|EES45622.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|254219283|gb|EET08667.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 212

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
            P+ +   K G + F  E      E+         +   +   + ++R++      LT R
Sbjct: 97  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLEKARNESKSVQEQRAASERLSKLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|320537182|ref|ZP_08037151.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
 gi|320145970|gb|EFW37617.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
          Length = 217

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT++E   ++L  +G++++EIA K  LS  T+   +     K    +R Q    A + G
Sbjct: 156 ELTQKEIEIIKLVAEGFSNKEIAHKQQLSEGTIKNNISVIFSKTFVADRTQLALFAFKNG 215

Query: 233 YI 234
            +
Sbjct: 216 IV 217


>gi|301301409|ref|ZP_07207547.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300850961|gb|EFK78707.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 201

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L       +++E+A+K  LS  T+  Y+ S   K    +R++A+  A +  
Sbjct: 140 PLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRN 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|262384081|ref|ZP_06077217.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|262294979|gb|EEY82911.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
          Length = 203

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+ RE   +     G T+ EIA++L LS HTV  +  +   KL   +       AI  
Sbjct: 134 QSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVN 193

Query: 232 GYI 234
             +
Sbjct: 194 KLV 196


>gi|257142870|ref|ZP_05591132.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 307

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 59/233 (25%), Gaps = 13/233 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           M+ +      +SS              +      ++    A   P   +L          
Sbjct: 75  MTHDPARSDSASSYAHALRACVGSLQALARPTATVFYRIDASGEPVDFELFGMTAAMHRA 134

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
                  L     D        S    ++  + Q       +                + 
Sbjct: 135 YVSRYRPL-----DPLHPARCASQPGAVVTLASQLPDERRDASSYWTGFLRRHGVADVVE 189

Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAAR 172
             +R G                  +   I   H     V    L   +     +R +   
Sbjct: 190 VLLRDGGAPVAAFSLLRLAGGGRYSAAEIAALHAVQPVVEVALLPPLRAVRGIRRIACDV 249

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 250 RLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 302


>gi|197116849|ref|YP_002137276.1| LuxR family helix-turn-helix transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086209|gb|ACH37480.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter bemidjiensis Bem]
          Length = 216

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 35/74 (47%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              +  +  +   NL++RE   LQL  DG  ++EIA   G+SV TV     S   KLD  
Sbjct: 139 LQRIPDEVPATYENLSQREREILQLIADGRNAKEIAFSFGVSVKTVENQRHSIMKKLDLF 198

Query: 220 NRIQAIAKAIRFGY 233
           +  +    A+R G 
Sbjct: 199 SIAELTKYAVRQGL 212


>gi|170694723|ref|ZP_02885874.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|187924570|ref|YP_001896212.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|307729196|ref|YP_003906420.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|323526630|ref|YP_004228783.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|170140354|gb|EDT08531.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|187715764|gb|ACD16988.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
 gi|307583731|gb|ADN57129.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
 gi|323383632|gb|ADX55723.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++A R   LT R
Sbjct: 96  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESTSVQQQRAAAERLGKLTAR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206


>gi|291449531|ref|ZP_06588921.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291352478|gb|EFE79382.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 932

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146
           +                      G  L  +G+         +       + +  +     
Sbjct: 795 VSAADAWTRLERPYEAAYVKEARGLHLLTSGV------PGGRTVLHQAIAAYEDIDAVWD 848

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +       +                 +L+ RE +  +LA  G ++ EIA +L LS  TV 
Sbjct: 849 VLRCQRELREHGQTTVRRPGALGYGDHLSPRERAVARLASLGLSNREIARELVLSHRTVE 908

Query: 207 AYLGSATVKLDAVNRIQ 223
            ++  A  KL   +R +
Sbjct: 909 HHVARALRKLGVSSRTE 925


>gi|284045809|ref|YP_003396149.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950030|gb|ADB52774.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 381

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LT 175
                   ++ +        ++  IE            L   +     +         LT
Sbjct: 257 HEREQMRRFLAWVDARSGALSDAAIEFVPRALGEQGSSLRQPRLPPMPSAAEDPFGGLLT 316

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            RE   L+L  +G T++EIA  L +SV TV  ++ S   KL   NR QA+A+
Sbjct: 317 RRELEVLRLVAEGRTNDEIATALVISVGTVKFHVSSILRKLRVGNRAQAVAR 368


>gi|237801455|ref|ZP_04589916.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024314|gb|EGI04371.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 77

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 40/76 (52%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            + +E+   + S A+NLT+RE   L+ + +G T+  IA  L L   T++ ++ SA  K+ 
Sbjct: 1   MNTMEINFLQPSPAKNLTQREIEVLKWSAEGKTAGAIAIILCLKERTIHFHIASAIQKMG 60

Query: 218 AVNRIQAIAKAIRFGY 233
             N+  A  +A   G 
Sbjct: 61  VCNKTAAAVRAAMSGM 76


>gi|299821741|ref|ZP_07053629.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817406|gb|EFI84642.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 213

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT RE   +Q    G +++EIA+KL +S  TV   + +   KL   +R Q    
Sbjct: 149 PLTSREQDVIQAVASGLSNKEIAKKLFISEGTVANNISALLNKLGLEHRTQLAIF 203


>gi|215427869|ref|ZP_03425788.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T92]
          Length = 249

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                       K+ +S    LT  E     L G+G +++EI  +L +S  TV+++L   
Sbjct: 161 AIAYAQRGRGARKRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHV 220

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL   +R+Q   +A   G
Sbjct: 221 YTKLGLSSRLQLAQQAAHRG 240


>gi|254387494|ref|ZP_05002733.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064]
 gi|294815121|ref|ZP_06773764.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443484|ref|ZP_08218218.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701220|gb|EDY47032.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327720|gb|EFG09363.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 230

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            S    LT RE   L   G+G ++ EIA +L ++  TV  ++     KL+  +R+QA   
Sbjct: 165 PSVLDVLTRREREVLSAVGEGLSNAEIAVRLSMAEATVKTHVSRLLNKLELRSRVQAAVL 224

Query: 228 AIRFGY 233
           A   G 
Sbjct: 225 AQELGI 230


>gi|160899416|ref|YP_001564998.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160365000|gb|ABX36613.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 216

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             +      +   + +  A  LT RE   L+    G  +++IA+ LG+S+ TV A+  + 
Sbjct: 126 AREAFAGHQQAASRDALLA-KLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANI 184

Query: 213 TVKLDAVNRIQAIAKAIRFG 232
             KL+A      +  A+  G
Sbjct: 185 MEKLNANTVADLLKIALGQG 204


>gi|70728620|ref|YP_258369.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342919|gb|AAY90525.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 216

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R QA     + 
Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALLLQQL 210


>gi|289705063|ref|ZP_06501474.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58]
 gi|289558226|gb|EFD51506.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58]
          Length = 232

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT  E   +L +S  TV  ++ S   KL   NR +    A R 
Sbjct: 170 DRLSAREREVMRLIARGYTYREAGAELFISDRTVETHVSSVLRKLQLSNRHELTRWAARR 229

Query: 232 GY 233
           GY
Sbjct: 230 GY 231


>gi|290962624|ref|YP_003493806.1| regulator [Streptomyces scabiei 87.22]
 gi|260652150|emb|CBG75282.1| putative regulator [Streptomyces scabiei 87.22]
          Length = 1002

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +  S     L+ RE     L   G TS  IAE+L LS  TV  +L     K    +R  
Sbjct: 928 REAASEELAVLSPREREIAALVAKGLTSPAIAERLFLSPRTVETHLSRIYRKTGVTSRAA 987

Query: 224 AIAK 227
             A 
Sbjct: 988 LAAL 991


>gi|290960685|ref|YP_003491867.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650211|emb|CBG73327.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 201

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RET  L++A DG  + +IA +L LSV TV  YL +   KL+A NR+ AI  A   G
Sbjct: 140 PLTPRETEVLRMAADGAEAADIASRLFLSVGTVRNYLTTVVTKLNARNRVDAIRVARESG 199

Query: 233 YI 234
           ++
Sbjct: 200 WL 201


>gi|187924633|ref|YP_001896275.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715827|gb|ACD17051.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEE 193
           E ++ A   +   H    + + D L     + +       L+ERE         G    +
Sbjct: 109 EEIVRAIRAVARGHRYLSEAVADTLADNLDKPAAGRPHEALSEREFQIFCKLAAGQIPTD 168

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IAE+L LSV TV+ Y      K+   N       AI+ G I
Sbjct: 169 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209


>gi|116696235|ref|YP_841811.1| response regulator [Ralstonia eutropha H16]
 gi|113530734|emb|CAJ97081.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 224

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   GYT  E A  LGLSVHTV +++ +   KL   +R +A+ +A + G 
Sbjct: 161 LSVRENEILDLISRGYTYAETARYLGLSVHTVQSHIKNIYGKLAVRSRGEAVFEAAKLGL 220

Query: 234 I 234
           +
Sbjct: 221 L 221


>gi|86739636|ref|YP_480036.1| ATP-dependent transcription regulator LuxR [Frankia sp. CcI3]
 gi|86566498|gb|ABD10307.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Frankia sp. CcI3]
          Length = 1235

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 164  FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              +   A   L++RE + L       T+ EIA +L +SV+TV  +L S   KLD   R  
Sbjct: 1165 DGRGPGAGGRLSDRELAVLSYLPTMLTTTEIAAELFVSVNTVKTHLKSIYRKLDVPRRRD 1224

Query: 224  AIAKAIRFGYI 234
            A+ +A     +
Sbjct: 1225 AVHRARELRLL 1235


>gi|83719547|ref|YP_442392.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|167581308|ref|ZP_02374182.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167619391|ref|ZP_02388022.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257138594|ref|ZP_05586856.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|83653372|gb|ABC37435.1| DNA-binding response regulator, LuxR family [Burkholderia
           thailandensis E264]
          Length = 212

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++      LT R
Sbjct: 97  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|39934390|ref|NP_946666.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39648239|emb|CAE26758.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 228

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177
            P+ +   K G V F          ++     A  +      E  +  S      +LT R
Sbjct: 94  IPMTVRAMKAGAVNFL-PKPFDEATLLAGVREAVSRARQKRSEADRDHSLRMHYASLTSR 152

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           E   + L   G  +++IA +L LS  TV  + G+   K+ A +  + +  A   G
Sbjct: 153 EREVMGLVTAGLMNKQIAWQLSLSEITVKIHRGNMMRKMQAKSLAELVRMADALG 207


>gi|330952743|gb|EGH53003.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 238

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 19/235 (8%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           +KS+  Q+L        +     ++A +        P  QQ    L +         +  
Sbjct: 14  EKSTGRQKLEWEFEQSASERGVHHYAYFFY---HHTPALQQHGFVLVSGPEAGEKNSHCA 70

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL-EGGLLPFAGIA-----FPV 122
                 D +        P+    +    V  +     +          A        F +
Sbjct: 71  ERQDVADTVRGVACS-QPLF-TGLLNRPVSSNDRGEMIDAGTTSDGMTAFYLGEEKAFSL 128

Query: 123 -RLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
            R    + G      E+ +      ++ E H     ++    E  +  +     +T+RE 
Sbjct: 129 LRFANKEAGTGNAQGEYSLATEVKSLVREFHHKLTGLVMGLNESDENFT-----ITDREK 183

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                   G T  EIA  L +S  TV+ ++ +   KL    ++QA  +  + G +
Sbjct: 184 EVYIWTAIGKTCNEIAVNLNISKRTVDFHISNVISKLGVRTKLQACIQLTKMGIL 238


>gi|315649523|ref|ZP_07902608.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315274996|gb|EFU38371.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 236

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H    Q I    +  +++   ++ LT +E   L     G T+ EI   L +   T++ ++
Sbjct: 129 HHTSAQAIRREFQ-RQRKELWSKLLTPQERKILCYVYQGKTTSEIHRILNIEEKTIDNHV 187

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            S   KL   NR +A   A + G +
Sbjct: 188 TSINRKLQVKNRREAAQVANKKGLL 212


>gi|311739592|ref|ZP_07713427.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305408|gb|EFQ81476.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 225

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           D L +         +LT RE   L+  G G+++ EI E++ +S+ TV  ++G    K  +
Sbjct: 142 DTLSISGADRRVLESLTAREQEILEAIGMGWSNTEICERMFISMPTVKTHVGRVLAKTSS 201

Query: 219 VNRIQAIAKAIRFGYI 234
            +R+ A   A R G +
Sbjct: 202 RDRVHAALFAYRTGVV 217


>gi|212635220|ref|YP_002311745.1| response regulator [Shewanella piezotolerans WP3]
 gi|212556704|gb|ACJ29158.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Shewanella piezotolerans WP3]
          Length = 196

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 38/76 (50%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
            +L    +   +A  L+ R+ S L+L   G +++++A+ L +S  TV  +  S    ++A
Sbjct: 121 QYLSKSVQVEDSAPTLSARQLSVLRLLAQGKSAKQVADALFISPRTVEFHKYSIMKLIEA 180

Query: 219 VNRIQAIAKAIRFGYI 234
            +  + I  A+  G +
Sbjct: 181 KSSAELIQYALSRGLV 196


>gi|78223365|ref|YP_385112.1| two component LuxR family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78194620|gb|ABB32387.1| two component transcriptional regulator, LuxR family [Geobacter
           metallireducens GS-15]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+ RE   + +   G T  +IA +L LSV TV+ Y      KL+  N  +     I  
Sbjct: 148 QSLSNREYQVMSMIASGKTVGKIATELSLSVKTVSTYRAHILRKLNMKNNAELTRFVIEN 207

Query: 232 GYI 234
             I
Sbjct: 208 KLI 210


>gi|88704024|ref|ZP_01101739.1| two-component system response regulator [Congregibacter litoralis
           KT71]
 gi|88701851|gb|EAQ98955.1| two-component system response regulator [Congregibacter litoralis
           KT71]
          Length = 206

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 151 GACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
               ++IT    +   ++ A+ +    LT RE     + G G+ + EIAE L +S  TV 
Sbjct: 119 ALVQRLITVGQRVDTGKAPASPDYFADLTPREEEVALMVGRGFNNREIAEALSVSERTVK 178

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRF 231
           A L +   KL   +R+Q      R 
Sbjct: 179 ANLTAIFEKLGLRDRVQLALYVNRL 203


>gi|121606401|ref|YP_983730.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2]
 gi|120595370|gb|ABM38809.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2]
          Length = 222

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 73/213 (34%), Gaps = 8/213 (3%)

Query: 24  IQNRIKARN-FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82
           + + + A   F++  +      P   Q    +              +    D        
Sbjct: 16  MSDWLSALGEFSVEALVVLGPDPFAGQESRLVLALHPPRLLEAAQALAASQDFGAPW-RD 74

Query: 83  GLLP-IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141
              P + WQ I      +      + L  G      IAFP+ +G     Y+    ++   
Sbjct: 75  SDAPLVAWQDISRAAFGDLGRWRRLWLAHGFQSVVRIAFPLTVGRAFECYLFSARQWPDR 134

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
                +         +     L + R+     L+ RE  CL LA  G T+ +  + L  S
Sbjct: 135 TEPSQLAWSALNIWPLVK-RALAQARNP----LSPRELECLDLAFQGMTARKTGDMLACS 189

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TVN +L +A  KL   N++ A+ +A  FG I
Sbjct: 190 ERTVNFHLANAMNKLKVDNKMAAVQRACWFGLI 222


>gi|296140293|ref|YP_003647536.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296028427|gb|ADG79197.1| transcriptional regulator, LuxR family [Tsukamurella paurometabola
           DSM 20162]
          Length = 920

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 7/174 (4%)

Query: 66  NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRL 124
               E  G             ++    + E +   + +L     GG       +     L
Sbjct: 735 AEWAEVVGRPVTSGLAQRCRALLADDDEAEELYLGALRLHEEAAGGYDLARTRLVHGEWL 794

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTERET 179
              +            LA    + A     +   +   L      K+ +     LT +E 
Sbjct: 795 RRRRRRTEARAQLDAALAGFEDVGAAAWAQRARNELAALGAPGKGKRSAGPLNLLTPQEL 854

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI-AKAIRFG 232
             ++LA  G T++EIA  L LS  TV  +L +A  KL    R       A   G
Sbjct: 855 QVVRLAAAGNTNKEIAAHLFLSPRTVGYHLYNAYPKLGVAGRGDLAGIVAQERG 908


>gi|291616972|ref|YP_003519714.1| UvrY [Pantoea ananatis LMG 20103]
 gi|291152002|gb|ADD76586.1| UvrY [Pantoea ananatis LMG 20103]
          Length = 219

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 QKAESPFSCLSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|312195247|ref|YP_004015308.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226583|gb|ADP79438.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 220

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 124 LGFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
           L     GY++  +        +      +A                 R +      LT+R
Sbjct: 101 LRAGARGYLLKGARQDDVIRTINAVARGDAVFGADIAGRVLTAFTDPRPAGVTFPQLTDR 160

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E   L L  DG+ +  IA +LGLS  TV  ++ S   KL A +R  AI +A R G 
Sbjct: 161 EREVLVLVADGWPNHRIAHRLGLSAKTVANHVSSILAKLHAPDRAAAILQARRAGL 216


>gi|290957348|ref|YP_003488530.1| two-component chitin response regulator [Streptomyces scabiei
           87.22]
 gi|260646874|emb|CBG69971.1| two-component chitin response regulator [Streptomyces scabiei
           87.22]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +   +LT RE   L   G G ++ EIA +L ++  TV  ++     KLD  +R+QA   
Sbjct: 145 PAVLDSLTRREREVLGALGAGLSNAEIAGRLDMAEATVKTHVSRLLGKLDLRSRVQAAVL 204

Query: 228 AIRFG 232
           A   G
Sbjct: 205 ARELG 209


>gi|320008415|gb|ADW03265.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus
            ATCC 33331]
          Length = 1015

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 122  VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTER 177
                  + G V       +LA    I   G    +  +     +   +        LT R
Sbjct: 896  AHAVALRLGAVPLVENIELLAGRGRIALAGQDGTLGDEPARPAEPVPAVDAIESFGLTSR 955

Query: 178  ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            E    +L   GYT+  IAE+L +S  T + ++ +   KL+  +R +A A A RF  
Sbjct: 956  EQEVHRLVAAGYTNRRIAEELYISPKTASVHVSNILAKLNVSSRGEAAALAHRFRL 1011


>gi|297191143|ref|ZP_06908541.1| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723336|gb|EDY67244.1| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 282

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 151 GACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               +++     L    S+ A      +LT RE   L     G T+   AE+LGL   TV
Sbjct: 193 ALREELLAACARLAPGPSTPAPTNGGVSLTPRELDVLGCVASGATNATAAERLGLRPETV 252

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            AYL SA  KL A  R++A+  A R G +
Sbjct: 253 KAYLRSAMRKLGARTRLEAVVAARRAGLL 281


>gi|49078420|gb|AAT49783.1| PA3604 [synthetic construct]
          Length = 218

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+   +LT ++   L +  +G  +++IA  L +S  TV A++ +   KL+   R QA   
Sbjct: 147 SAGLASLTPQQFRVLTMVCEGLLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAALL 206


>gi|39996395|ref|NP_952346.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983275|gb|AAR34669.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
          Length = 216

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              +  S+++  LT RE   LQL  +G  ++E+A  L +SV TV +       KL   + 
Sbjct: 141 RRGRPESASSIRLTPREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSI 200

Query: 222 IQAIAKAIRFGY 233
                 AIR G 
Sbjct: 201 ADLTKFAIREGL 212


>gi|330868990|gb|EGH03699.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|331011382|gb|EGH91438.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 74

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 40/73 (54%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +E+   + S A+NLT+RE   L+ + +G T+ +IA  L L   T++ ++ SA  K+   N
Sbjct: 1   MEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCN 60

Query: 221 RIQAIAKAIRFGY 233
           +  A  +A   G 
Sbjct: 61  KTAAAVQAALSGM 73


>gi|297538851|ref|YP_003674620.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297258198|gb|ADI30043.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 202

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVII---EAHGACYQVITDFLELFKKRSSAARNLTE 176
            P+ +   + G + F ++   +  E ++          + I       +   S    LTE
Sbjct: 88  IPMSVRAIRAGAIDFLTK--PVTREKLMASVRLALIESEKILTERANHQNVQSHLAELTE 145

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           RE   + LA  G++++EIA +LG+S  TV  +      K  A N +     A  
Sbjct: 146 RERDVMALAVQGHSNKEIARQLGISHRTVEIHKSKVMHKTGATNLLDLARIAHE 199


>gi|226304720|ref|YP_002764678.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183835|dbj|BAH31939.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 243

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   +   ++  +AA  LT++E    +L G G ++ EI+    LS  TV  Y+     KL
Sbjct: 134 LVRRIRSEQESGTAAALLTDQELLIFELIGKGLSNREISTHAELSEKTVKNYVSRILEKL 193

Query: 217 DAVNRIQAIAKAIRF 231
               R QA   A + 
Sbjct: 194 GLERRTQAAVLATKL 208


>gi|159460272|gb|ABW96538.1| putative regulatory protein [Streptomyces spiroverticillatus]
          Length = 429

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 75/229 (32%), Gaps = 23/229 (10%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           +S++ LT +  +S    +  L  +   +     A   +  A      +  I +   +   
Sbjct: 210 ISDDQLTQELLASQPAAAAWLVRLARSMGDERLAFKCVVRA------ESFILKSWGFRSP 263

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIW---QSIQEETVIESSGQLSVRLEGGLLPFAG 117
                +       +         L P  W    + ++     SS +L        L  A 
Sbjct: 264 YAAALHAKGLFEKNPDKLRAACELYPDGWASASAAEDLAQTWSSLRLGRDRAAEQLKRAA 323

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
                  G+ + G     +  L      + E      +V    +     R+    +LT+ 
Sbjct: 324 A------GYERAG----AARDLARVASKLRELGVRSGRV-RRPMRCDGHRTG---SLTDT 369

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           E +   L   G T+ ++  +L +S HTV  +L     K++  +R++   
Sbjct: 370 EFAVADLVSQGLTNVQVGRQLYISAHTVAFHLKKIFRKMEVSSRVELAR 418


>gi|149927806|ref|ZP_01916057.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149823428|gb|EDM82659.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 209

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     L++RE   +++   G    EIA++L LS  TV+ Y      K+      +
Sbjct: 139 EDSEKPLHATLSDREFQTIRMIAAGKKLSEIADELSLSPKTVSVYRARILEKMRMKTNGE 198

Query: 224 AIAKAIRFGYI 234
               A+  G I
Sbjct: 199 LTRYALENGLI 209


>gi|126439631|ref|YP_001058659.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126219124|gb|ABN82630.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 14/184 (7%)

Query: 65  PNILIETYGDDFLFHFNSGLLP---IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
              ++    D           P   +I      E        +   +  G      I   
Sbjct: 27  DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAADGLAMLTAIRDGYPSVRVIVLT 86

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSA 170
           +         +       +L+    ++        +                   + + A
Sbjct: 87  MLDNPVLMHTMRQAGALAVLSKRGDLDELPRALAAVYQGRPFVGTHAGAAGGAAARGTDA 146

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            R L+ RE   ++L   G T  +IA + G S+ TV+ +  +A  KL   + +     A  
Sbjct: 147 PRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 206

Query: 231 FGYI 234
            G +
Sbjct: 207 NGLV 210


>gi|330893152|gb|EGH25813.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 81

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  S+   +LT ++   L +  +G  +++IA +L +S  T+ A++ +   KL    R Q
Sbjct: 8   AKAASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQ 67

Query: 224 AIAKAIRF 231
           A     + 
Sbjct: 68  AALLLQQL 75


>gi|329905999|ref|ZP_08274320.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547387|gb|EGF32216.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 223

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               ++I  F+       +    LT R+   L +      ++EIA +L LS  TV A+  
Sbjct: 136 AVSTKMIERFVRAPVVAVNPLDALTTRQLQILTMIAGRKGTKEIAFELDLSEKTVAAHRA 195

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               +L   + +  +  A+R G +
Sbjct: 196 QIMERLGVRDVVGLVLLAVRHGLV 219


>gi|258655312|ref|YP_003204468.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258558537|gb|ACV81479.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 867

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 8/215 (3%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
                +  R+         +         + L     ++      +    +    D  + 
Sbjct: 660 AVFSALAERMWMTGVPDDRVIQDAPGELARLLDVPGTSWAAGDLAVWLARLGLLADPTVT 719

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                  P     + +    + + +   R           A             +  +  
Sbjct: 720 VA----EPFALTLVGQW---DRAARWWHRAGESFAEAMAWADSPITADRVRAVELLDALG 772

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198
            + + + +         V          R++ A  LT R+    +L   G+T+ EIA++L
Sbjct: 773 AVGSADRLRSGLRRDGVVAVPPRPRAATRANPA-GLTNRQLDVAKLVARGFTNAEIADRL 831

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +S  T + ++ +   KL   NR   + +A   G 
Sbjct: 832 FISTKTADHHVSAVLAKLGVGNRRAVVVQADELGL 866


>gi|255036046|ref|YP_003086667.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948802|gb|ACT93502.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 148 EAHGACYQVIT----------DFLELFKKRSSAAR------NLTERETSCLQLAGDGYTS 191
           E H A   ++           + ++  + R           NLT+RE   L      +++
Sbjct: 112 ELHAAVRSIMDGKPYLPDSVKEIIKTRESRPDPHDDFVSMYNLTKREVDILTEVAREFST 171

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            EIA+KL LS +TV  Y  S   KL A N    +  A ++  I
Sbjct: 172 AEIADKLCLSEYTVETYRKSIIRKLAAKNIASLVNFAHKWKLI 214


>gi|254510783|ref|ZP_05122850.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534494|gb|EEE37482.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 416

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT RE   L+L   G +++ IA KLG++ HTV  ++ + + K+   NR  A   
Sbjct: 184 QLTRREKQVLRLVSQGKSNKTIAAKLGITEHTVKLHMHNVSGKIGVSNRTAAAHF 238


>gi|296158349|ref|ZP_06841180.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295891293|gb|EFG71080.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++A R   LT R
Sbjct: 96  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESSSVQQQRAAAERLGKLTAR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206


>gi|51892161|ref|YP_074852.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855850|dbj|BAD40008.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 206

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L E E + L++  +G +  EI  +L LS  TV  ++     K+   NR QA+A+A+R 
Sbjct: 143 ETLREEEIAMLRMLAEGASYAEIGNRLYLSERTVRRHMNLLFDKMGVQNRTQAVAEAMRR 202

Query: 232 GYI 234
           G +
Sbjct: 203 GLL 205


>gi|239941331|ref|ZP_04693268.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987793|ref|ZP_04708457.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291444772|ref|ZP_06584162.1| two component response regulator MppU [Streptomyces roseosporus
           NRRL 15998]
 gi|291347719|gb|EFE74623.1| two component response regulator MppU [Streptomyces roseosporus
           NRRL 15998]
          Length = 230

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE    +L  +G T+ EI EKL ++  T   ++ +   KL   NR+   A +   G 
Sbjct: 164 LTAREQEIARLVAEGLTNAEIGEKLYITAGTAKTHIANVQAKLRVRNRVGIAAWSWENGL 223


>gi|225352276|ref|ZP_03743299.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157523|gb|EEG70862.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 223

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           RE   + L   G+TS+EI  KLG+   TV  Y+     KL A NR QA+ + + 
Sbjct: 164 REREVMGLCSLGFTSKEIGIKLGIGEPTVKTYIRRVMKKLGAKNRTQAVIQWME 217


>gi|220921537|ref|YP_002496838.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219946143|gb|ACL56535.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 221

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                   LT ++   L +  +G  +++IA +L +S  TV A++ +   KL   +R QA+
Sbjct: 145 DLMRRLATLTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAV 204

Query: 226 AKAIRFG 232
             + R G
Sbjct: 205 IASSRIG 211


>gi|218780409|ref|YP_002431727.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761793|gb|ACL04259.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 212

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 125 GFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSA-------ARNLT 175
              + G + + ++          I + H     +  +  EL   R S          +L+
Sbjct: 92  RAIEAGAMGYMTKKSAPEQLVTAIRKLHSGSRFLTEEAAELLALRVSRWSKGGSLLDSLS 151

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   L+    G+T+ EIA+   +SV TV+ Y      KL+  N       AI+   I
Sbjct: 152 KRELQVLRHLASGHTNREIADSYHISVKTVDTYRARLLKKLNLRNNADISRFAIQNNLI 210


>gi|149912607|ref|ZP_01901141.1| two component transcriptional regulator, LuxR [Roseobacter sp.
           AzwK-3b]
 gi|149813013|gb|EDM72839.1| two component transcriptional regulator, LuxR [Roseobacter sp.
           AzwK-3b]
          Length = 217

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 43/93 (46%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           + E ++    +    +   +       S    LTE E   L+ A +G T++ IA ++GL+
Sbjct: 123 SLESVLRLILSGQTFLPSSVIEAPVNGSDGDELTEIELLILKFAAEGMTNKSIASQVGLN 182

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  ++ +   KL A NR+QA+  A     I
Sbjct: 183 ETTVKMHMRAICRKLRASNRVQAVVIARNNALI 215


>gi|147673828|ref|YP_001216783.1| response regulator [Vibrio cholerae O395]
 gi|146315711|gb|ABQ20250.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
          Length = 227

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS +TVN+Y      KL+
Sbjct: 146 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPNTVNSYRYRLFAKLN 205

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 206 INGDVELTHLAIRHGIL 222


>gi|49079272|gb|AAT49874.1| PA1397 [synthetic construct]
          Length = 211

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVI- 146
           +       +  ++   L         I   +       G V+           +A E + 
Sbjct: 55  LDLRFPGLTRIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELG 114

Query: 147 -IEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                    +V+  +     L  + S     LTER+   L+L   G +++EI   L +S 
Sbjct: 115 QAILAIRAGEVLVRYEPSGLLPLQPSPRLEGLTERQPDVLRLLAQGKSNKEIGRALDISH 174

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227
           +TV  ++ S    LD  +R  A  K
Sbjct: 175 YTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|86140782|ref|ZP_01059341.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis
           MED217]
 gi|85832724|gb|EAQ51173.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis
           MED217]
          Length = 211

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L ERE   ++ A    T ++IAEK+ LS  TV  Y  +   KL   NR   +  AI+   
Sbjct: 149 LKEREIEFIKHACTEMTYKQIAEKMFLSPKTVEGYREAVFQKLGLKNRTGLVIYAIKNNI 208


>gi|292486546|ref|YP_003529412.1| Fimbriae Z protein [Erwinia amylovora CFBP1430]
 gi|292897781|ref|YP_003537150.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291197629|emb|CBJ44723.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291551959|emb|CBA18996.1| Fimbriae Z protein [Erwinia amylovora CFBP1430]
 gi|312170615|emb|CBX78878.1| Fimbriae Z protein [Erwinia amylovora ATCC BAA-2158]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT +E   ++L   GYT  EIA +   ++ TV+    +A  +L   + ++ I  A   G
Sbjct: 153 GLTPKELEVIRLFSSGYTLSEIARRQNRTISTVSTQKYNAMRRLGVSSNVELIRYAYAQG 212

Query: 233 YI 234
            I
Sbjct: 213 LI 214


>gi|16762530|ref|NP_458147.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144019|ref|NP_807361.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213420163|ref|ZP_03353229.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213426302|ref|ZP_03359052.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213584160|ref|ZP_03365986.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213613147|ref|ZP_03370973.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647796|ref|ZP_03377849.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855646|ref|ZP_03383886.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289805447|ref|ZP_06536076.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289826435|ref|ZP_06545547.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25298776|pir||AH0963 Two-component system response regulator protein STY3992 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504835|emb|CAD03204.1| Two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139655|gb|AAO71221.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 196

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 116 AGIAFPVRLG------FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KK 166
           A I   V             G   F S+      E+I   H         +L      K 
Sbjct: 74  ATIMLSVHDSPALVEQALNAGARGFLSKRCSPD-ELIAAVHTVATG--GCYLTPDIAVKL 130

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            +     LT+RE    +    G   +EIA +LGLS   V+ +  +   KL   N ++   
Sbjct: 131 AAGRQDPLTKRERQVEEKLAQGMAVKEIAAELGLSPKMVHVHRANLLEKLGVSNDVELAH 190

Query: 227 K 227
           +
Sbjct: 191 R 191


>gi|315505839|ref|YP_004084726.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412458|gb|ADU10575.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 222

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195
            ++A    + A     +++  + +     + A   L   T RE   L L     ++ EIA
Sbjct: 117 RVVARGEALLAPTVTRRLLDRYADRLPAPAPAGDVLAVLTAREREVLTLTARALSNAEIA 176

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +L LS  TV  ++ +   KL   +RIQA+  A   G +
Sbjct: 177 ARLHLSTATVKTHVSAILTKLSLRDRIQAVVLAYDTGLV 215


>gi|104779522|ref|YP_606020.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95108509|emb|CAK13203.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 217

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 151 GACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                VI   L   +KR  +     LT+R+   L+L   G T+  IA+ LGLSV TV A+
Sbjct: 128 AVLPMVIGQALRHSRKRTSAPPQAPLTKRQLEILRLIARGETTRSIADGLGLSVKTVEAH 187

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 +L   +    +  A+R G I
Sbjct: 188 RSQIMHRLQIHDVPGLVLFAVREGII 213


>gi|104782609|ref|YP_609107.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111596|emb|CAK16317.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 262

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 65/223 (29%), Gaps = 20/223 (8%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             + ++   ++  N+ +   +S          + +    D          +    D F  
Sbjct: 29  SLVRVLNEYVQIDNWVVLIFSSQHVEVVSLPEVADAEEVDA-FIHRYVTELYLL-DPFYI 86

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
                     +  +          +   +     +      + V+L   +   +      
Sbjct: 87  ANRENPQGGFFHLLDIAPEYFLETEYYHQYFAQYISVDEAQYNVQLDADRTLCISI-GSK 145

Query: 139 LMLANEVIIEAHGA---CYQVITDFLELFKKR------SSAARN--------LTERETSC 181
           +  + E I            ++   +                +         LT RE+  
Sbjct: 146 VRFSQEQITILDIIKPWVTALMHQRMCFESDAEKNLAEPPPRQETLAQLGAQLTTRESDV 205

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           L+L   G++++EIA KL LS  T+  +  +   KL+  ++ + 
Sbjct: 206 LRLLLSGFSNKEIAGKLALSAETIKVHRRNIYAKLNIKSQSEL 248


>gi|221209586|ref|ZP_03582567.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia multivorans CGD1]
 gi|221170274|gb|EEE02740.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia multivorans CGD1]
          Length = 277

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 61/220 (27%), Gaps = 12/220 (5%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
           H    +                      L+ +L                   D       
Sbjct: 57  HARLRQFGFSTLGYGAYEMIGRRILCAHLLRDL--APPSFMQPYIEGALYESDPRFAQVR 114

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVIFTSE 137
               P+ W+  + E   +  G   V    G L      +G+ F +          +  + 
Sbjct: 115 QSGFPVAWRLDEIEAAAQRGGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAVNVTS 174

Query: 138 FLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191
                  + + VI  A      V    L   + R +  R   L + +   L+    G + 
Sbjct: 175 ETHGTDWIDDRVIGGALAVSLAVHRVALPFLEARVARMRGFALGDEQQQVLERLVHGLSD 234

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +EIA  L  S+H V  ++ S     +  NR Q    A R 
Sbjct: 235 QEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274


>gi|168700623|ref|ZP_02732900.1| two component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 205

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175
           + P      ++G V          ++ +++      ++  +   L  +R +       LT
Sbjct: 90  SVPTTARAMRSGAVHV--LEKPYDDQEMLDTVHEALRLDAEKRTLRAQRIAIQARLTALT 147

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            RE   L L   G  ++ IA +L +S  +V  + G+   KL   N  + +   +  G
Sbjct: 148 AREREVLDLVVSGKANKVIARELAVSEKSVEFHRGNMMRKLKVDNVAELVRLVLTSG 204


>gi|163745624|ref|ZP_02152984.1| two-component response regulator [Oceanibulbus indolifex HEL-45]
 gi|161382442|gb|EDQ06851.1| two-component response regulator [Oceanibulbus indolifex HEL-45]
          Length = 209

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEI 194
                N+ +++      Q+     +  +     A     LT +E    +    G ++ EI
Sbjct: 104 EKPFNNQDMLDLINTALQIDAARRKGIEADVENAELLARLTPQEHRVFERVAAGLSNREI 163

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           A ++ +SV TV  +      KL+A +  + +  
Sbjct: 164 ASEMDISVKTVEVHRARVMRKLEANSVAELVRF 196


>gi|91778297|ref|YP_553505.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91690957|gb|ABE34155.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 249

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A  + I     L   +     NL+ R+   ++L   G+T++ IA +LG++  TV  +L  
Sbjct: 163 ALTEPIAQIQALQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARELGVAEGTVKVHLSV 222

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
               L   NR  AI  A+  G++
Sbjct: 223 IFRALGVHNRSTAI--AVINGWL 243


>gi|28871830|ref|NP_794449.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855083|gb|AAO58144.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 199

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 155 QVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
            ++     L        R        LT R+   L L   G T++EIA +L  S HTV +
Sbjct: 112 HLLQRIQALLSGEPPEPRTIASTPLTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRS 171

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++ +    L A  R +A   A R G +
Sbjct: 172 HVQAILTILQASCRTEAADTARRLGLV 198


>gi|56477577|ref|YP_159166.1| putative two-component response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56313620|emb|CAI08265.1| putative two-component response regulator [Aromatoleum aromaticum
           EbN1]
          Length = 208

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCL 182
               +G+V   S   +L + V     G  Y          +  + A+    LT  +T  +
Sbjct: 96  RGGASGFVSKASSGEVLRSAVRCVLEGGIYAPSEPEGGAKRSGAPASERFGLTAGQTRVM 155

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L   G ++ EIA+ LGLS  TV  ++ +    L   +R QA+    R G
Sbjct: 156 ELLAQGKSNREIADLLGLSEGTVKVHMSAIFRALHVSSRAQALIVIARHG 205


>gi|269217550|ref|ZP_06161404.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212485|gb|EEZ78825.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 202

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 6/154 (3%)

Query: 87  IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH--KNGYVIFTSEF--LMLA 142
           +       E  +      + R+         +           +       S F      
Sbjct: 49  VDVVLADVEMPVMDGIAAASRIRKEHPDVKILMVTTFGRPGYLRRAMEAGASGFVVKDAP 108

Query: 143 NEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           ++ +  A       Q + D     +  ++++  LTERE   L+   DG T+ +++  L L
Sbjct: 109 SDSLASAVRKVMAGQRVVDPDLAAESLAASSNPLTEREQDVLRATSDGGTTADVSRSLFL 168

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV  YL SA  K  A  R +A+  A   G++
Sbjct: 169 SQGTVRNYLSSAIHKTGARTRAEAVVIARDNGWL 202


>gi|227891992|ref|ZP_04009797.1| two-component response regulator [Lactobacillus salivarius ATCC
           11741]
 gi|227866196|gb|EEJ73617.1| two-component response regulator [Lactobacillus salivarius ATCC
           11741]
          Length = 201

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L       +++E+A+K  LS  T+  Y+ S   K    +R++A+  A +  
Sbjct: 140 PLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRN 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|187919554|ref|YP_001888585.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187717992|gb|ACD19215.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 257

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +T    L   +     NL+ R+   ++L   G+T++ IA  LG++  TV  +L      L
Sbjct: 176 LTQIQALQPHQQHLLENLSPRQQDIMRLVHRGWTNKMIARDLGVAEGTVKVHLSVIFRAL 235

Query: 217 DAVNRIQAIAKAIRFGYI 234
              NR  AI  A+  G++
Sbjct: 236 GVHNRSTAI--AVINGWL 251


>gi|288917777|ref|ZP_06412139.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288350833|gb|EFC85048.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 308

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           L  +++        QV T  L     R      L+ERE + L+L  +G+ ++EI  +L  
Sbjct: 218 LPPDMLGSLLRQVQQVSTQVLA---PRGLTFSGLSERELTVLRLVAEGHDTQEIGRRLNY 274

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           S  TV   L   T +    NR  A+A A+R G +
Sbjct: 275 SERTVKNVLQDVTRRFGLRNRSHAVAFALRQGLL 308


>gi|134101943|ref|YP_001107604.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133914566|emb|CAM04679.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 156

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 155 QVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
            ++ +F  + +   +        LT RE   L    DG + EEIA+KL  S  T+   L 
Sbjct: 73  ALVEEFERIREHVLAPRDLTMHGLTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILY 132

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               +L   NR  A+A AIR G I
Sbjct: 133 QFMKRLGLRNRAHAVAYAIRLGII 156


>gi|113866184|ref|YP_724673.1| response regulator [Ralstonia eutropha H16]
 gi|113524960|emb|CAJ91305.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178
           +R G           + L+ A   + +        + D L     +       + L+ERE
Sbjct: 94  IRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGGLDKPTEQPVHQMLSERE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                    G +   IA++L LSV TV+ Y      K+           AI+ G +
Sbjct: 154 FQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209


>gi|39935178|ref|NP_947454.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39649029|emb|CAE27550.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 211

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTE 176
            P+ +   K G V F ++     ++ +++A  A  ++     E+  KR+        LT 
Sbjct: 91  VPMTVRGMKAGAVDFLTK--PFRDQEMLDAVSAAVELDRRRREMEHKRNEIVHRFDALTP 148

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           RE    ++   G  ++ +A  LGLS  TV  + G    K+ A +    +  A
Sbjct: 149 REKQIFEMVSAGSMNKNVAADLGLSEITVKIHRGRVMKKMGARSLADLVRMA 200


>gi|17547031|ref|NP_520433.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17429332|emb|CAD16019.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 238

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S    LT RE S LQL  +G T+ ++   L LS  T+  Y      KL   N    +  A
Sbjct: 151 STWETLTARERSVLQLVAEGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVGNVTGLVLAA 210

Query: 229 IRFGYI 234
           I  G I
Sbjct: 211 IGLGLI 216


>gi|315647520|ref|ZP_07900622.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276959|gb|EFU40300.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 216

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKL 198
                 ++       ++          +  A   NLT RE    +L  +   + EIA+ L
Sbjct: 119 EAVRGEMMLPSKVAAKLAARLRTTGAPQFPAQHYNLTPRELQIAKLMTEYKNNREIADML 178

Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAI 225
            ++  TV  Y+     K+   +R +AI
Sbjct: 179 YITEGTVRNYISVIYEKIGMNDRTKAI 205


>gi|256158896|ref|ZP_05456746.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|256254270|ref|ZP_05459806.1| Monoamine regulon transcriptional regulator [Brucella ceti B1/94]
          Length = 245

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229


>gi|213966477|ref|ZP_03394650.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum
           SK46]
 gi|213950876|gb|EEB62285.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum
           SK46]
          Length = 278

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ RE   L     G+T+ E AE++G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 216 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 275


>gi|150009195|ref|YP_001303938.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256841751|ref|ZP_05547257.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|298377017|ref|ZP_06986971.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19]
 gi|149937619|gb|ABR44316.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256736645|gb|EEU49973.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|298266001|gb|EFI07660.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19]
          Length = 203

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+ RE   +     G T+ EIA++L LS HTV  +  +   KL   +       AI  
Sbjct: 134 QSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVN 193

Query: 232 GYI 234
             +
Sbjct: 194 KLV 196


>gi|111024873|ref|YP_707293.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110823852|gb|ABG99135.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 287

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                 +      +    V    H    ++          R      LT RE   L    
Sbjct: 179 RDIHADLRAVAQHVADTAVRSRLHELSDRIAALRQPSNATRPGREMQLTPREIDVLAHVA 238

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T+ EIA++L +   TV +YL +A  KL A +R +A+  A +F  +
Sbjct: 239 LGCTNSEIAQRLSVGPQTVKSYLRAAMNKLSACSRQEAVVTARKFKLL 286


>gi|328908051|gb|EGG27810.1| LuxR response regulator receiver [Propionibacterium sp. P08]
          Length = 221

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            L++R+   + L   G +++EI++ L L+  TV  ++      L    R QAI   ++
Sbjct: 156 GLSDRQAEVMDLIAAGQSNKEISKTLFLAEKTVKNHINQIFATLGVTTRAQAIVLWLQ 213


>gi|302545087|ref|ZP_07297429.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462705|gb|EFL25798.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 273

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 17/112 (15%)

Query: 137 EFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARN----------LTERET 179
           +   L    +   H            ++   L       S A            LT RE 
Sbjct: 157 DRDDLDGSFLNAVHEIASGHGWISPTLVRSLLRPPSPADSPAHRAVAATPYPARLTARER 216

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             + L   G  + EIA  L ++  TV  ++ +   K    +R Q  A A   
Sbjct: 217 EVVALVTSGLNNGEIAATLHVAESTVKFHVSNILHKTGCRDRSQLTAHARAL 268


>gi|297193410|ref|ZP_06910808.1| large transcriptional regulator [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151764|gb|EFH31341.1| large transcriptional regulator [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 141

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 151 GACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                ++  +    + R          L+ RE    +LAG G T+ EIA  L LS  TV 
Sbjct: 44  ARARALLRSYQPAKETRPPGRPSYGDRLSPREREVAELAGTGLTNREIATTLHLSPRTVE 103

Query: 207 AYLGSATVKLDAVNRIQAIAK 227
            ++  A  KL   +R      
Sbjct: 104 QHVARAMRKLGTASRQHLARI 124


>gi|270294378|ref|ZP_06200580.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275845|gb|EFA21705.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 204

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   +     G T++ IA+KL LS+HTV  +  +   KL   +       AI    
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 234 I 234
           +
Sbjct: 195 V 195


>gi|219683566|ref|YP_002469949.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621216|gb|ACL29373.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
          Length = 224

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            Q     L   K    A  +++  E + ++L  +G ++  IAE+ G S  TV  Y+  A 
Sbjct: 147 QQAHERLLMQGK---PAIMSMSPNEQAVMELCSEGLSTRTIAEETGDSESTVKTYISRAM 203

Query: 214 VKLDAVNRIQAIA 226
            KL A +R +A+A
Sbjct: 204 RKLRAKSRAEAVA 216


>gi|218129321|ref|ZP_03458125.1| hypothetical protein BACEGG_00898 [Bacteroides eggerthii DSM 20697]
 gi|317475290|ref|ZP_07934556.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988498|gb|EEC54819.1| hypothetical protein BACEGG_00898 [Bacteroides eggerthii DSM 20697]
 gi|316908544|gb|EFV30232.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 204

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   +     G T++ IA+KL LS+HTV  +  +   KL   +       AI    
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 234 I 234
           +
Sbjct: 195 V 195


>gi|172041269|ref|YP_001800983.1| LuxR family transcriptional regulator [Corynebacterium urealyticum
           DSM 7109]
 gi|171852573|emb|CAQ05549.1| putative transcriptional regulator (LuxR family) [Corynebacterium
           urealyticum DSM 7109]
          Length = 291

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +    +  +    C Q+++        R      L+ RE   L     G+T+ E AE+
Sbjct: 200 GRVEDETLRRDLEALCTQMVSPV------RVKQTTKLSARELDVLSCVALGHTNVEAAEE 253

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 254 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 288


>gi|160891075|ref|ZP_02072078.1| hypothetical protein BACUNI_03522 [Bacteroides uniformis ATCC 8492]
 gi|317480984|ref|ZP_07940064.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|156859296|gb|EDO52727.1| hypothetical protein BACUNI_03522 [Bacteroides uniformis ATCC 8492]
 gi|316902877|gb|EFV24751.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 204

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L++RE   +     G T++ IA+KL LS+HTV  +  +   KL   +       AI    
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 234 I 234
           +
Sbjct: 195 V 195


>gi|149908586|ref|ZP_01897248.1| putative tetrathionate reductase complex: response regulator
           [Moritella sp. PE36]
 gi|149808420|gb|EDM68357.1| putative tetrathionate reductase complex: response regulator
           [Moritella sp. PE36]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++LTERE   L L   G  +++IA  L ++V TV  +  S   K +A    + +   +++
Sbjct: 153 QSLTERELDILLLLVQGKRNQQIANDLCIAVRTVEVHRSSLMKKFNAKTIAELV---LQY 209

Query: 232 GY 233
           G 
Sbjct: 210 GL 211


>gi|70732224|ref|YP_261980.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346523|gb|AAY94129.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 266

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 48/186 (25%), Gaps = 26/186 (13%)

Query: 64  IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123
              +      D F           + +  +         +   R     +    I F  +
Sbjct: 72  QDYLNGLYLLDPFYVASREQSRSGLLRLAEVAPEHFQLTEYYQRYFRLNVVADEIQFNCQ 131

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL---ELFKKRSSAARN---- 173
           L   +   +         A   I            ++   L    + +   +        
Sbjct: 132 LADGRTLCLSL-GSRQRFAPPQIALLSLIEPWVVALLRQRLPHESIEQDNPAQLHPMPDW 190

Query: 174 ---------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                          LT RE    +L   G +++EIA KL +S  TV  +      KL  
Sbjct: 191 RSQLDHSMQQLRGAQLTARELDVGRLMLSGCSNKEIARKLEISAETVKVHKKHIYSKLGI 250

Query: 219 VNRIQA 224
            ++ + 
Sbjct: 251 KSQSEL 256


>gi|326382928|ref|ZP_08204618.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198518|gb|EGD55702.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 217

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                +   L    + S     LT +E     L G G T+ +IA+++ L+  T+  Y+  
Sbjct: 134 RSTAALLARLR-DGEPSDPLARLTGQEREVFTLIGQGMTNRQIADRMFLAEKTIKNYVSR 192

Query: 212 ATVKLDAVNRIQAIAKAIRF 231
              KLD   R Q    A   
Sbjct: 193 ILSKLDMQRRTQVAVLATEL 212


>gi|323495672|ref|ZP_08100743.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|323319307|gb|EGA72247.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 ISGDVELTHLAIRHGML 209


>gi|300778493|ref|ZP_07088351.1| response regulator transcription regulator protein
           [Chryseobacterium gleum ATCC 35910]
 gi|300504003|gb|EFK35143.1| response regulator transcription regulator protein
           [Chryseobacterium gleum ATCC 35910]
          Length = 203

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           L +  KR++    L+ RE    +L  DG  + EIA KL + + TV+ Y      KLD  N
Sbjct: 132 LIIQNKRNNPVEKLSSREYEIFKLLADGNGNLEIANKLNIQMSTVSTYKKRIFQKLDVTN 191

Query: 221 RIQAI 225
             + I
Sbjct: 192 IAELI 196


>gi|256379888|ref|YP_003103548.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924191|gb|ACU39702.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + LT+RE   L+L G G ++ ++ ++L +S  TV  Y+     KL   NR+QA   A   
Sbjct: 153 QRLTDREVEVLELLGLGMSNADVGQRLHMSEATVKTYVSRLLAKLGLTNRVQAALLARDA 212

Query: 232 GY 233
           G 
Sbjct: 213 GL 214


>gi|153802604|ref|ZP_01957190.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|124121867|gb|EAY40610.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
          Length = 267

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 27  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 84  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 203

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIA+ L +S  TV  +      +L   +  + 
Sbjct: 204 SPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYAQLHVSSLSEL 253


>gi|29829791|ref|NP_824425.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606900|dbj|BAC70960.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 13/155 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFP--------VRLGFHKNGYVIFTSEFLMLAN 143
           +      +   +   R   G L       P        VR G       +  S       
Sbjct: 87  LTYSREPKVVAEALRRGASGYLVHGEFTVPELITAVRDVRRGRLTVSSSLSVSYEPNGNP 146

Query: 144 EVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
             +        +     +    +R+       L+ RE   + L   G  + +IA    +S
Sbjct: 147 SHLQSVVAQSSKAWPTRVTGLPRRTVNRLDFGLSSREVEVMDLIAAGMNNRQIAATCFIS 206

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI---RFGY 233
             TV  ++     KL +  R +AIA  +   R G+
Sbjct: 207 EKTVKNHINRIFAKLHSATRSEAIAHWLGTAREGW 241


>gi|255744289|ref|ZP_05418242.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262147286|ref|ZP_06028085.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|255738229|gb|EET93621.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262031280|gb|EEY49895.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
          Length = 265

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 25  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 82  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 141

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 142 PRSFPREQITALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 201

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIAE L +S  TV  +      +L   +  + 
Sbjct: 202 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 251


>gi|319945743|ref|ZP_08019994.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319748103|gb|EFW00346.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 228

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           L+  E   +Q  G G +++EIA KL LS  T+  YL +   KL+  +R Q    +++ G
Sbjct: 157 LSLTEWRIIQQVGFGESNKEIAAKLFLSEGTIRNYLSTILSKLNLRDRTQLAIWSVQKG 215


>gi|291528659|emb|CBK94245.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale M104/1]
          Length = 218

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           + +E S ++L  +G  + EIA++L LS  TV  Y+     KL   +R Q  
Sbjct: 160 SGKELSIIELVAEGLNNREIADELYLSEGTVRNYISVILEKLQLRDRTQLA 210


>gi|293393060|ref|ZP_06637377.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291424594|gb|EFE97806.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 209

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H  C   +   L   ++ ++    LT RE     L   G + + IA +L LS  TV+ + 
Sbjct: 123 HYLCADAV-KALRGGQQDANVLAALTPREREVFYLLVKGESVKGIAYQLELSHKTVHVHR 181

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
            +   KL   + I+ +  A++   +
Sbjct: 182 ANVLGKLQCSSTIELVHFALQHQLL 206


>gi|153216991|ref|ZP_01950755.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153820512|ref|ZP_01973179.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|254848338|ref|ZP_05237688.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297578812|ref|ZP_06940740.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498687|ref|ZP_07008494.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|124113973|gb|EAY32793.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|126508945|gb|EAZ71539.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|254844043|gb|EET22457.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297536406|gb|EFH75239.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297543020|gb|EFH79070.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 227

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 146 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 205

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 206 INGDVELTHLAIRHGIL 222


>gi|296447677|ref|ZP_06889595.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296254818|gb|EFH01927.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 233

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--------NLTERETSCLQLAGDGYT 190
           L    +++         +    +     R+ A           LT RE   L     G T
Sbjct: 128 LDAIADLLAGRSPISSTIARTIIRRISGRAPAHEQAAAIAAERLTPREMDILHGIAKGLT 187

Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             E+A  L +S  TV A++ +   KL + NR +A+ +A R G I
Sbjct: 188 YAELATHLQISRQTVPAHIKNVYRKLQSNNRSEAVYEASRRGLI 231


>gi|296118869|ref|ZP_06837442.1| transcriptional regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967967|gb|EFG81219.1| transcriptional regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 294

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +    +  E    C Q+++        R   +  L+ RE   L     G+T+ E AE+
Sbjct: 203 NRVEDESLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 256

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 257 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 291


>gi|289641922|ref|ZP_06474077.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508222|gb|EFD29166.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 459

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%)

Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195
           +E  +L      E      +    F  +       A  LT RE   ++L   G  + EIA
Sbjct: 359 AEDEILLARSDRELGAVASRAADLFRPVTAADDPVASLLTARERRIVELMVTGARNSEIA 418

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           ++L LS  TV +++ S   KL + NR +A+++
Sbjct: 419 DRLVLSEDTVKSHVRSVLRKLRSANRAEAVSR 450


>gi|270313641|gb|ACZ73896.1| FixJ [Azospirillum brasilense]
          Length = 230

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   LQ   +G +++ IA +L +S  TV  +      K+ A +    +  A+  G
Sbjct: 165 SLTPRERDVLQWLVEGKSNKVIAFELSISPRTVEIHRARVMEKMRADSLPSLVRMALAAG 224

Query: 233 Y 233
            
Sbjct: 225 I 225


>gi|154250616|ref|YP_001411440.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154566|gb|ABS61783.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 279

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 64/248 (25%), Gaps = 30/248 (12%)

Query: 7   TGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
           +G+ + SL   ++      +   ++        I           +I +      +  + 
Sbjct: 20  SGRLAESLSAGDVHVSATKLATGLRYL-VPETQIYIGFYRADVPPIIIDFDG-RDEWNEG 77

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
                    D     F +    +     +            +           I + + L
Sbjct: 78  YTDGKYLL-DPTYDQFVARSESVCLSPKEMFPPDFRKSDYYLSYYRPYGMVDEICYLLYL 136

Query: 125 GFHKNGYVI---------FTSEFLMLANEVIIEAHGACYQVITDFLELFKK--------- 166
                 YV          F++        V+     A             +         
Sbjct: 137 EHDLACYVSLMRLADKPAFSTTEYRRLEAVLPAVEAAAQHFWALLDRQDNEEQDRSFQLH 196

Query: 167 -------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                  R     +L++RE     L   G   + +   LG++  TV  ++    VKLD  
Sbjct: 197 QILSTAYRRFGGDSLSDREKEVTNLLLKGLPPKSVGRMLGIAPGTVRNHIKRIYVKLDVR 256

Query: 220 NRIQAIAK 227
           ++ + +A 
Sbjct: 257 SQAELLAL 264


>gi|70731557|ref|YP_261298.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345856|gb|AAY93462.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 219

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
              + VI   L   +K+        NLT R+   L+L   G ++ EIA  LGLS+ TV  
Sbjct: 129 AIAHTVINQALTRAQKQPPPPEQNHNLTARQLEILRLIVRGKSTREIALGLGLSIKTVET 188

Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +      +L   +    +  A+R   I
Sbjct: 189 HRSQIMKRLQIFDVAGLVLFAVRERII 215


>gi|297538155|ref|YP_003673924.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257502|gb|ADI29347.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 215

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            +   +   +L++RE   + L   G+T  EIAEKL LSV T++ Y      KL+  +  +
Sbjct: 144 METEKAPHESLSDREFQTMTLIASGFTVGEIAEKLALSVKTISMYRTRMLEKLNLRHNAE 203

Query: 224 AIAKAIRFGYI 234
               AI+   +
Sbjct: 204 LTHYAIKNHLV 214


>gi|261221423|ref|ZP_05935704.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997385|ref|ZP_06109942.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260920007|gb|EEX86660.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551853|gb|EEZ07843.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 254

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 186 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238


>gi|258653054|ref|YP_003202210.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258556279|gb|ACV79221.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 905

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                L  +      +LT  E   + L   G  + +IA  LG+S  TV +++ +A  KL 
Sbjct: 828 RTARPLTPRAHFGITSLTGTERRVVGLVASGKANSDIAALLGISRRTVESHVSAAYRKLG 887

Query: 218 AVNRIQAIAKAIRFGY 233
             +R+     A+R G 
Sbjct: 888 VNSRVAMARIALRHGI 903


>gi|254381952|ref|ZP_04997315.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340860|gb|EDX21826.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 228

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RE   + L   G ++++IA    +S  TV  ++     KL +  R +AIA+
Sbjct: 161 GLSSREEEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFAKLQSTTRSEAIAR 215


>gi|187919191|ref|YP_001888222.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187717629|gb|ACD18852.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 215

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 44/114 (38%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          S  ++ A   ++E        +   L       S    LT R
Sbjct: 97  VTQAVRAGASGYVLKDSPSTEIIQAIGAVLEGKQFFSAGLGARLIQASAMQSPVERLTPR 156

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++  LSV TV  +  +   KLD   + + I  A+  
Sbjct: 157 ERDILDALAEGLSSKQIAQRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210


>gi|114706362|ref|ZP_01439264.1| probable transcriptional regulator protein, LuxR family
           [Fulvimarina pelagi HTCC2506]
 gi|114538223|gb|EAU41345.1| probable transcriptional regulator protein, LuxR family
           [Fulvimarina pelagi HTCC2506]
          Length = 260

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S    LT RE S L+L   G  ++ +A +L ++ HTV  +L     KL   NR +A A 
Sbjct: 186 SRLDTLTPRELSVLELVAQGKPNKLVANRLSITEHTVKLHLHKLMGKLHVTNRTEAAAI 244


>gi|15964305|ref|NP_384658.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307307041|ref|ZP_07586780.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307320121|ref|ZP_07599541.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|15073482|emb|CAC45124.1| Transcriptional regulatory protein [Sinorhizobium meliloti 1021]
 gi|306894167|gb|EFN24933.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306901981|gb|EFN32580.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 215

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 38/63 (60%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + LT +++  L +  +G  +++IA +LG+S  T+ A++ +  +KL+  +R QA+ +  
Sbjct: 148 RLQTLTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLS 207

Query: 230 RFG 232
           + G
Sbjct: 208 KLG 210


>gi|17546316|ref|NP_519718.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17428613|emb|CAD15299.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|99652817|dbj|BAE94659.1| response regulator [Ralstonia solanacearum]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176
            P+ +   K G V F           + E                +++ +A      LT 
Sbjct: 97  VPMAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARTEDSAAREQKAANDLLSRLTT 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           RE   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|330820172|ref|YP_004349034.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
 gi|327372167|gb|AEA63522.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
          Length = 496

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P R     +       E +     +  EA GA             +R +A  +L+ RET 
Sbjct: 384 PWRAALGDDEAARCLREEVE-RGRLCGEAVGALVAQGAPVARRTARRGTAGPHLSARETE 442

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L++   G +++E A++L +S  TV  ++ +   KLD   R  A  KA   G I
Sbjct: 443 VLRVISRGASNKEAAQELTMSPSTVRTHVENVFRKLDCSTRAAATLKASSLGLI 496


>gi|288922546|ref|ZP_06416727.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288346101|gb|EFC80449.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 952

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 62/215 (28%), Gaps = 3/215 (1%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELH-NYDLDSGDIPNILIETYGDDFLF 78
           R   +       +               +    +   +   +   +   L          
Sbjct: 720 RWVELCRPYGCEHLFHTPWLLHAAIACARLGRHDQGKSLADEHLQLARHLGVARHISVGL 779

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
              +        S      +E       RLE      +     +  G  + G        
Sbjct: 780 RIRALFEDADAASALLRESVELLEFSPARLEMARSLESLGHLLIETGHSRAGLEAIARGA 839

Query: 139 LMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            + A             ++ D   ++   +      LT  E +   LA DG+T+ +IAE+
Sbjct: 840 ELAAQCHAGRMVERLGSLLADSGRKVPGAQVQGLHALTPAERTAAGLAADGFTNRQIAEQ 899

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           L LS  TV  +L  A  K+   +R Q  A A+  G
Sbjct: 900 LFLSEKTVETHLSRAYRKVGVRSRTQLAA-AMAAG 933


>gi|241763752|ref|ZP_04761799.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241366971|gb|EER61367.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 208

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 148 EAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           E  G   +++    E F        R +    LT RE   L+    G  +++IA+ LG+S
Sbjct: 114 ELVGLVERMLDHAREAFAGYQQAASRDALLSKLTGREAQVLERIVAGRLNKQIADDLGIS 173

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           + TV A+  +   KL+A      +  A+
Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIAL 201


>gi|227506399|ref|ZP_03936448.1| regulatory family protein [Corynebacterium striatum ATCC 6940]
 gi|227197050|gb|EEI77098.1| regulatory family protein [Corynebacterium striatum ATCC 6940]
          Length = 293

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   ++  E    C Q+++        R   +  L+ RE   L     G+T+ E AE+
Sbjct: 202 NRVEDEDLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 255

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 256 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 290


>gi|167839465|ref|ZP_02466149.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 269

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 9/186 (4%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSV 106
           + +  EL                   D        S    ++  + Q       +     
Sbjct: 80  EPVDFELFGMTAAMHRAYVS-RYRPLDPLHPSRCASQPGAVVTLASQLPDERRDASSYWT 138

Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF 164
                      +   +R                    +   I   H     V    L   
Sbjct: 139 GFLRRHGVADVVEVLLRDCGAAVAAFSLLRLAGDGRYSAAEIAALHAVQPVVEVALLPPL 198

Query: 165 K-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
           +     +R +    LT RE    +L  DG +++ IA  L L   TV  +L     KL   
Sbjct: 199 RAVRGIRRIACGARLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVS 258

Query: 220 NRIQAI 225
           NR + +
Sbjct: 259 NRTELV 264


>gi|82699111|ref|YP_413685.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|163842464|ref|YP_001626868.1| monoamine regulon transcriptional regulator [Brucella suis ATCC
           23445]
 gi|189023446|ref|YP_001934214.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225851728|ref|YP_002731961.1| monoamine regulon transcriptional regulator [Brucella melitensis
           ATCC 23457]
 gi|254690497|ref|ZP_05153751.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|254696618|ref|ZP_05158446.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254701000|ref|ZP_05162828.1| Monoamine regulon transcriptional regulator [Brucella suis bv. 5
           str. 513]
 gi|254709343|ref|ZP_05171154.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|254731531|ref|ZP_05190109.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|256030866|ref|ZP_05444480.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256045986|ref|ZP_05448858.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256112698|ref|ZP_05453619.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           bv. 3 str. Ether]
 gi|256264760|ref|ZP_05467292.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260169768|ref|ZP_05756579.1| Monoamine regulon transcriptional regulator [Brucella sp. F5/99]
 gi|260546468|ref|ZP_05822208.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260563267|ref|ZP_05833753.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|261759311|ref|ZP_06003020.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|294851595|ref|ZP_06792268.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL
           07-0026]
 gi|82615212|emb|CAJ10153.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           biovar Abortus 2308]
 gi|163673187|gb|ABY37298.1| Monoamine regulon transcriptional regulator [Brucella suis ATCC
           23445]
 gi|189019018|gb|ACD71740.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225640093|gb|ACO00007.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           ATCC 23457]
 gi|260096575|gb|EEW80451.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260153283|gb|EEW88375.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|261739295|gb|EEY27291.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|263095169|gb|EEZ18838.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|294820184|gb|EFG37183.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL
           07-0026]
 gi|326408219|gb|ADZ65284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326537934|gb|ADZ86149.1| monoamine regulon transcriptional regulator [Brucella melitensis
           M5-90]
          Length = 245

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229


>gi|15420719|gb|AAK97431.1|AF382827_1 transcriptional activator GacA [Azotobacter vinelandii]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 120 FPVRL-GFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAAR 172
           FP RL      GY+   +  + ++ A   +   H      I   L L     ++  S   
Sbjct: 89  FPTRLMQAGAAGYLTKGAALDEMVQAIRQVFAGHRYISPQIAQQLALKAFQPQQSGSPFD 148

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE     +  +    + I++KL LS  TVN Y      KL   + ++    A+R G
Sbjct: 149 LLSEREIQIALMIANCEKVQSISDKLCLSPKTVNTYRYRIFEKLSINSDVELALLAVRHG 208

Query: 233 YI 234
            +
Sbjct: 209 MV 210


>gi|318060318|ref|ZP_07979041.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. SA3_actG]
 gi|318079909|ref|ZP_07987241.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. SA3_actF]
          Length = 222

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             A     +             +    LT RE   L L  +G T+ +IA +LG+   TV 
Sbjct: 128 AAARRLIDRYHHANGPRATHAQARTAPLTPRERDVLALLAEGETNADIARRLGMRESTVK 187

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGY 233
           A++      L+  NR+QA   A   G 
Sbjct: 188 AHVSRILTALEVTNRVQAALVARDAGL 214


>gi|87199253|ref|YP_496510.1| LuxR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134934|gb|ABD25676.1| transcriptional regulator, LuxR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 223

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 13/113 (11%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P+     +  Y + +   +        +A                  +     L+ R+  
Sbjct: 124 PIFDADGEVEYFLGSQVEIAEDQGQANDARR-------------NGAAERVERLSRRQKE 170

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L L   G  +++IA +LGLS  TV  +  +    LD      AI  AI  G+
Sbjct: 171 ILVLMAAGKLNKQIAYELGLSERTVKMHRSAVLKGLDVKTSADAIRVAIEAGF 223


>gi|91791280|ref|YP_552230.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91701161|gb|ABE47332.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 256

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 12/231 (5%)

Query: 12  SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71
           ++  + +     I   + A++F   T+    DF      +        D   I +  +  
Sbjct: 29  ATEADTNNLTREIVELLGAQSFVYTTL-LPPDFHGEDGDLRFFIGCKPDLCSIYHKRMWI 87

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG---FHK 128
             D F  +  +   PII   I    +  S     +R+       +G+  P         +
Sbjct: 88  MNDPFFDYARTNSNPIIGSKI---RLQTSGQVEMMRVSAEHGFRSGLVVPTHTSMNASMR 144

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----FKKRSSAARNLTERETSCLQ 183
            G +    +      E I+      +  +   L L      ++++    +L + E   LQ
Sbjct: 145 MGLLYIGLDLPEEIGEPILWGQRVKFGALGMELLLWWSNRMRQQAMRKYSLIDDEVDMLQ 204

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L+  G  + EIA  L L    V   L +   KLD     QA+  A   G +
Sbjct: 205 LSKKGMVATEIAALLDLKTTAVYRKLNTIKEKLDVDKLEQAVKLAESVGLL 255


>gi|90962775|ref|YP_536690.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90821969|gb|ABE00607.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 201

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L       +++E+A+K  LS  T+  Y+ S   K    +R++A+  A +  
Sbjct: 140 PLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRN 199

Query: 233 YI 234
           +I
Sbjct: 200 WI 201


>gi|325529068|gb|EGD06069.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 277

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 12/224 (5%)

Query: 18  SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
             + H    +I                     L+ +L              +    D   
Sbjct: 53  FAQCHERLRQIGFSTLGYGAYEMIGRRILCAHLLRDL--APATFMQPYIEGMLYESDPRF 110

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVI 133
                   P+ W+  + E   +  G   V    G L      +G+ F +          +
Sbjct: 111 AQVRQSGFPVAWRLDEIEAAAQRDGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAV 170

Query: 134 FTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGD 187
             S        + + VI  A      V    L   + R +  R  +L + +   L+    
Sbjct: 171 NVSSEAHGTEWIDDRVIGGALSVSLAVHRVALPFLEARIARLRGFSLGDEQQQVLERLVH 230

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           G + +EIA  L  S+H V  ++ S     +  NR Q    A R 
Sbjct: 231 GLSDQEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274


>gi|304397145|ref|ZP_07379024.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304355294|gb|EFM19662.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 219

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 QKTESPFSCLSERELQIMLMITRGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|296156364|ref|ZP_06839202.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295892963|gb|EFG72743.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 218

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++ A   ++E        +   L       S    LT R
Sbjct: 97  VTQAVRAGASGYVLKDSPATEIIQAIGAVLEGKSFFSAGLGARLIQASATQSPVERLTPR 156

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA++  LSV TV  +  +   KLD   + + I  A+  
Sbjct: 157 ERDILDALAEGLSSKQIAQRNELSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210


>gi|269838161|ref|YP_003320389.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787424|gb|ACZ39567.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 983

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L+L  DG T  ++AE+L LS  TV+ +L S   KL   +R  A   A+   
Sbjct: 922 GLTPREVEVLRLVADGLTDAQVAERLFLSPRTVSQHLRSIYNKLGVSSRAAATRFALENR 981

Query: 233 Y 233
            
Sbjct: 982 L 982


>gi|284040679|ref|YP_003390609.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819972|gb|ADB41810.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 219

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L L  +G ++ EI+EK+ LS  TV  +      K    N    +A A +   
Sbjct: 159 LSEREKEVLMLICEGLSTLEISEKIFLSPRTVEGHRLRILEKTGTKNTAGMVAYAFKNSL 218

Query: 234 I 234
           +
Sbjct: 219 V 219


>gi|192292208|ref|YP_001992813.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192285957|gb|ACF02338.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 12/147 (8%)

Query: 96  TVIESSGQLSVRLEGGLLPFAGIAF-------PVRLGFHKNGYVIFTSEFLMLANEVIIE 148
            +   SG               I F       P+ +   K G V F ++     ++ +++
Sbjct: 61  RLPGVSGLDFRDALAKAGLEIPIVFMTGHGDIPMSVRAMKAGAVDFLTK--PFRDQDMLD 118

Query: 149 AHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
           A            E             +LT R+         G  +++IA +L +S  TV
Sbjct: 119 AVTRALAKDRARREGEGALADLRQRFESLTPRQRQLFTFVAAGLMNKQIAGELNVSEVTV 178

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFG 232
             + G    K+DA      + KA   G
Sbjct: 179 KIHRGIMMKKMDARTVADLVRKAEALG 205


>gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 233

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A  N T RE S LQL  +G  ++EIA +L  S+  V  Y+    +K    +R + +  A+
Sbjct: 168 ALHNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 227

Query: 230 RFGYI 234
               +
Sbjct: 228 ENQLV 232


>gi|15598800|ref|NP_252294.1| response regulator ErdR [Pseudomonas aeruginosa PAO1]
 gi|107103118|ref|ZP_01367036.1| hypothetical protein PaerPA_01004187 [Pseudomonas aeruginosa PACS2]
 gi|116051601|ref|YP_789560.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152984066|ref|YP_001346921.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218890171|ref|YP_002439035.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254242302|ref|ZP_04935624.1| hypothetical protein PA2G_03043 [Pseudomonas aeruginosa 2192]
 gi|296387892|ref|ZP_06877367.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313108962|ref|ZP_07794937.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9949760|gb|AAG06992.1|AE004780_11 response regulator ErdR [Pseudomonas aeruginosa PAO1]
 gi|115586822|gb|ABJ12837.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126195680|gb|EAZ59743.1| hypothetical protein PA2G_03043 [Pseudomonas aeruginosa 2192]
 gi|150959224|gb|ABR81249.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218770394|emb|CAW26159.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310881439|gb|EFQ40033.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 217

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           S+   +LT ++   L +  +G  +++IA  L +S  TV A++ +   KL+   R QA   
Sbjct: 147 SAGLASLTPQQFRVLTMVCEGLLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAALL 206


>gi|295698853|ref|YP_003606746.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438066|gb|ADG17235.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 220

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 52/188 (27%), Gaps = 27/188 (14%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118
            D+            D  +              +       S  +   R+         +
Sbjct: 38  ADAAQAYQRFCALRPDVVV--------------MDVSLPGASGIEAMRRMLAREPDARVL 83

Query: 119 AFPVR------LGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITD-----FLELFK 165
            F V             G + + ++        E +         +  D      L    
Sbjct: 84  IFSVHEESIFVRRALDAGALGYVTKASAPDVLVEAVRSIARRAGYLSPDISQALALRTAF 143

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
                 R L+ RE   L+L   GYT   IAEKLGLS  TV  +      K  A N +Q  
Sbjct: 144 NEGPPGRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLA 203

Query: 226 AKAIRFGY 233
             A R G 
Sbjct: 204 QMASRLGL 211


>gi|227497321|ref|ZP_03927553.1| possible response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833192|gb|EEH65575.1| possible response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 240

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ RE   ++L   GYT +E A +L +SV TV  ++ +   KL   NR +    A   
Sbjct: 178 DRLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAAAR 237

Query: 232 GYI 234
             +
Sbjct: 238 RIV 240


>gi|118136465|gb|ABK62855.1| transcriptional regulator [Halomonas anticariensis]
          Length = 217

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                L     + +    L+ RE     +  +  T  +I+++L LS  TVN Y      K
Sbjct: 130 AQRVVLAKVDAQDNPFDTLSHRELQVAMMIVNCQTVSDISDRLFLSPKTVNTYRYRIFEK 189

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   + ++     +R G +
Sbjct: 190 LGVHSDVELTHLGLRHGLV 208


>gi|119025065|ref|YP_908910.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764649|dbj|BAF38828.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 221

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 64/179 (35%), Gaps = 15/179 (8%)

Query: 65  PNILIETYGDDFLFHFNSGL--LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA-FP 121
             +   T GD+ +         L ++   +  E +   +    +RL    LP  GI  F 
Sbjct: 41  YVVWTATSGDEAIERCQRNDDNLNLLVLDMSMEGLQGPAICHRIRLMDRHLPILGITSFS 100

Query: 122 V---RLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAA 171
           +   R    + G      +         IE         G     + +     ++ +S  
Sbjct: 101 INSYRSRLMEAGAQGLIGKEDSDQLAKAIERLCGGNVMEGFEPPALANVRIRREEETSP- 159

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
             LT RE   + L  DG    EIAE+L +S  TV  ++     KL+     QA+A  +R
Sbjct: 160 -RLTVREEQIISLCADGMLDREIAERLDISESTVRKHMQGILKKLNCKTARQAVALWVR 217


>gi|332306220|ref|YP_004434071.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173549|gb|AEE22803.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 218

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT RE   L+    G  +++IA  L +S  T+ +++ S   KL A NR++ + 
Sbjct: 153 LTRRELIVLKHLTKGEANKQIAYNLHISETTIKSHVSSILKKLGATNRVKVVV 205


>gi|299532904|ref|ZP_07046291.1| ATP-dependent transcription regulator LuxR [Comamonas testosteroni
           S44]
 gi|298719128|gb|EFI60098.1| ATP-dependent transcription regulator LuxR [Comamonas testosteroni
           S44]
          Length = 857

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           ++RE   LQ    G  ++EIA++L L+ +TV  YL    +KLDA NR QAIA+A R   +
Sbjct: 797 SQRERELLQALALGGRNQEIAQRLQLTENTVKWYLKRLYMKLDAHNRTQAIAQARRLHLL 856


>gi|295836763|ref|ZP_06823696.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. SPB74]
 gi|295826194|gb|EFG64729.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. SPB74]
          Length = 215

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 50/192 (26%), Gaps = 31/192 (16%)

Query: 67  ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLG 125
            L+    +  +      LL     ++      +    L+             +  PV  G
Sbjct: 10  RLVVADDNPVVRAGLRALLEGRADALVVAEAADGRQALAATERHRPDGVLLDLRMPVVDG 69

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------------------VITDFLELFKK 166
                 +   +  L++      E H    +                    +         
Sbjct: 70  LTVLPRLARLAPVLVVTYGRDAELHARVRRMGAAGCLVHGDFTVPQLVGAVRHLRAGAPS 129

Query: 167 RSSAAR-----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
               +             L+ RE   + L   G  + +IA    ++  TV  ++     K
Sbjct: 130 LPPPSHTRSAVRPSWGGPLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAK 189

Query: 216 LDAVNRIQAIAK 227
           L    R +AIA+
Sbjct: 190 LQTTTRSEAIAR 201


>gi|262403910|ref|ZP_06080467.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262349872|gb|EEY99008.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 265

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 45/195 (23%), Gaps = 25/195 (12%)

Query: 54  LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113
           L                   D F           ++       +         +      
Sbjct: 58  LSTQRELLFQRYLTHAYLD-DPFYSALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTG 116

Query: 114 PFAGIAFPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGAC--------YQVITDFLELF 164
               ++  V L   ++  V     +      E I                      L L 
Sbjct: 117 WQDEVSLVVNLDGERSIVVYLGCFKPRSFPREQITALQQRFTVLQALCQQHWQQQPLRLA 176

Query: 165 KKRSSA---------------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           +    +               A+ L+ RE     L   G  S+EIAE L +S  TV  + 
Sbjct: 177 ESAQPSQELRTWVEQAIQSFGAQRLSPREQEITALLIQGLDSQEIAEALAISHGTVKNHR 236

Query: 210 GSATVKLDAVNRIQA 224
                +L   +  + 
Sbjct: 237 KRIYAQLHVSSLSEL 251


>gi|255532626|ref|YP_003092998.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345610|gb|ACU04936.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 224

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +  A + + RE   L+L  +G T++E+A++L +S  TV  +  S T K    N    I  
Sbjct: 157 AETAIDFSSREIEILELIAEGLTNQEMADRLFISKRTVEGHRQSLTDKTGCRNTAALIRY 216

Query: 228 AI 229
           A+
Sbjct: 217 AM 218


>gi|254513081|ref|ZP_05125147.1| two-component regulator [Rhodobacteraceae bacterium KLH11]
 gi|221533080|gb|EEE36075.1| two-component regulator [Rhodobacteraceae bacterium KLH11]
          Length = 225

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
            PV     +   +I  ++   +       A G    +     +      +    LT RE 
Sbjct: 100 VPVDTPLDELCGLIRAAQRGEMKLAPKAVA-GLFRALHERLSDQAVIVPAEPEILTRRER 158

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               L  +G T++EIA +L  SV TV  ++ +   KL+   R
Sbjct: 159 EVCTLVCEGLTNKEIARELNRSVGTVKNHIHAILGKLEVPRR 200


>gi|218675482|ref|ZP_03525151.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 213

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 53/175 (30%), Gaps = 10/175 (5%)

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
           D             D           PI         +  S   +  R    +      +
Sbjct: 36  DLAGRAVESASLRADLAAIAARFPDAPIT-------LLSGSDDAIIARQALKMGIRGFFS 88

Query: 120 --FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTE 176
              PV +       V+    F       +I A+            L  +    A    T 
Sbjct: 89  TSLPVDIALAGLRLVLAGGTFFPQLLGAVIGANEHSPARNAAEKSLDDRTQYFAIAGFTP 148

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           RE   L     G +++ IA KL LS HTV  +L     KL A NR + +A+ I+ 
Sbjct: 149 REAEILAELQSGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVARLIQR 203


>gi|223934739|ref|ZP_03626659.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896694|gb|EEF63135.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 216

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             +S    LT  E   L     GY  +EIAE++ +S+ TV +Y+ +   KL   +R +A+
Sbjct: 151 GDTSPVARLTPGEKEFLDQLAAGYAYKEIAERMRISIDTVRSYVRTVYEKLHVHSRTEAV 210

Query: 226 AK 227
            K
Sbjct: 211 VK 212


>gi|157059879|dbj|BAF79686.1| putative LuxR family two-component system response regulator
           [Streptomyces kasugaensis]
          Length = 217

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H              ++       LT+RE   L L G+G ++ +  +++ +S  TV  Y+
Sbjct: 132 HVVDSLASGRSAHRAEQARRRLETLTDRELEVLALLGEGLSNADAGQRIHMSEATVKTYV 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL+  NR+QA   A   G 
Sbjct: 192 SRILAKLECENRVQAALLARDAGL 215


>gi|109898189|ref|YP_661444.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700470|gb|ABG40390.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 218

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT RE   L+    G  +++IA  L +S  T+ +++ S   KL A NR++ + 
Sbjct: 153 LTRRELIVLKHLTKGEANKQIAYNLHISETTIKSHVSSILKKLGATNRVKVVV 205


>gi|254387192|ref|ZP_05002459.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1]
 gi|194346004|gb|EDX26970.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1]
          Length = 90

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           +    L K  +     LT RE     L  +G T+  IA +L LS  TV+ +L     K  
Sbjct: 15  SWIYSLTKPNTQRVPGLTPREHEIAALVAEGLTTPAIAARLYLSPRTVDTHLSHIFRKTG 74

Query: 218 AVNRIQAIAKAIRF 231
              R    A   R 
Sbjct: 75  VTTRSALAALTARH 88


>gi|188496895|dbj|BAG32345.1| putative response regulator [Streptomyces kasugaensis]
          Length = 217

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H              ++       LT+RE   L L G+G ++ +  +++ +S  TV  Y+
Sbjct: 132 HVVDSLASGRSAHRAEQARRRLETLTDRELEVLALLGEGLSNADAGQRIHMSEATVKTYV 191

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KL+  NR+QA   A   G 
Sbjct: 192 SRILAKLECENRVQAALLARDAGL 215


>gi|149192213|ref|ZP_01870429.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148833944|gb|EDL50965.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 211

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT ++   L +  DG  +++IA  L +S  T+ A+  +   KL   N  QA+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYDLNVSEDTIKAHRTAIFRKLGVKNSTQAVI 202


>gi|24375643|ref|NP_719686.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350554|gb|AAN57130.1|AE015848_8 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 202

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 148 EAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
               A  +   +    F+++S   +   LT+RE   L     G T+++I+E + LS+ T+
Sbjct: 111 ALVQAIKKAHKESQASFEQQSLQHKFAQLTDREQQVLAHVVQGMTNKQISEAMYLSLRTI 170

Query: 206 NAYLGSATVKLDAVNRIQAI 225
             +      KL+  N  + +
Sbjct: 171 EVHRAKIMKKLEVSNMAELV 190


>gi|32472470|ref|NP_865464.1| transcriptional regulatory protein fixJ [Rhodopirellula baltica SH
           1]
 gi|32443706|emb|CAD73148.1| probable transcriptional regulatory protein fixJ [Rhodopirellula
           baltica SH 1]
          Length = 474

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----YQVITDFLELFKKRSSAARNL 174
             +        +++ T   L   ++  I            + +    +L  +     + L
Sbjct: 352 VRLTHKDGHLVWLLLTCSSLFNDSDQFIGIQVRAVDITHRKHVETLTKLAAEAKEKLKRL 411

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T RE   L+   +G  ++ IA +L +S  TV  +  +   KLDA +  + +  
Sbjct: 412 TIRERQVLEQIVEGRMNKVIANRLEISEKTVERHRSNLMKKLDAQSVAELVKL 464


>gi|134292079|ref|YP_001115815.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134135236|gb|ABO56350.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 213

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+R+   L+   +G  ++ IA++L LS  TV A++ +    L+ +NR QA A A +
Sbjct: 150 AGPLTQRQIEVLRYVAEGVPNKVIADRLNLSEKTVKAHVTAIFKALNVLNRTQAAAAARK 209

Query: 231 FGYI 234
            G +
Sbjct: 210 AGLL 213


>gi|325289007|ref|YP_004265188.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964408|gb|ADY55187.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 216

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-----NLTER 177
              +G++  T+    L   +     G       ++        +  ++       +  E+
Sbjct: 94  AQASGFISKTASREQLVTAIRCALRGETVIPVSLLRQLRRQDLQIKASGNNEKGVSFDEK 153

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E S L+    G +++EIA+ L +S   V   L     KL+  +R +AI +A R G I
Sbjct: 154 ELSILKEVARGKSNKEIADYLLISQRVVEYNLTRIFGKLNVRSRSEAIFEARRLGVI 210


>gi|260429733|ref|ZP_05783709.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260419216|gb|EEX12470.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 241

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                LT ++   ++L   G  +++IA +L L+  TV A++ +   +L   NR QA   
Sbjct: 160 PKLAELTPQQKRIMKLICAGKPNKQIAYELSLAEATVKAHITALLRRLGVQNRTQAAVL 218


>gi|217968913|ref|YP_002354147.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217506240|gb|ACK53251.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 211

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    L++RE         G +  +IA  L LSV T++ Y      KL   +  +    A
Sbjct: 144 APHEKLSDRELQVFLRLARGESVSDIAAVLNLSVKTISTYRTRLLEKLGVASNAELATYA 203

Query: 229 IRFGYI 234
           +R G I
Sbjct: 204 LRHGLI 209


>gi|153216266|ref|ZP_01950359.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124114355|gb|EAY33175.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
          Length = 267

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 49/230 (21%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 27  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 84  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAAR---------------NL 174
                 E I                      L L +    +                  L
Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRNWVEQAIQSFGVQRL 203

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIA+ L +S  TV  +      +L   +  + 
Sbjct: 204 SPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYSQLHVSSLSEL 253


>gi|116694520|ref|YP_728731.1| response regulator [Ralstonia eutropha H16]
 gi|113529019|emb|CAJ95366.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 219

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
               NGY++ + +   L   ++    G  + V                 LT RE   L L
Sbjct: 101 DAGANGYLVKSGDISELVPALMALREGRNF-VAARATAPATAAPDGIATLTRRELQILML 159

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              G T+ +IA +L +S  T   +  +   KLD  N  + +A A R G 
Sbjct: 160 IARGATAGDIAAQLDISPLTARKHRENLMRKLDLHNTAEVVAYAARQGI 208


>gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 305

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            LT RE   L     G  + +I + LGLS  TVN +L     KL   NR  A  +A +
Sbjct: 243 GLTAREAEVLLWIAKGKANRDIGDILGLSPRTVNKHLEQIYAKLGVENRASAAVRAAQ 300


>gi|284989855|ref|YP_003408409.1| LuxR family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284063100|gb|ADB74038.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus
           DSM 43160]
          Length = 910

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 1/137 (0%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
              ++   + +G         +    G+             ++ T+     A    +   
Sbjct: 767 EAFDQARAQLAGLPMPYERARVDFAHGVTLRRVGRRRDAAALLTTARQSFAALGAQVYVE 826

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             C + +       +       NLTE+E +   L   G T++E+A  + LSV TV  +L 
Sbjct: 827 -RCDRELKTGRPAPRAAEPGTENLTEQERTVATLVATGLTNKEVAASMLLSVKTVQFHLT 885

Query: 211 SATVKLDAVNRIQAIAK 227
               KL   +R +  A+
Sbjct: 886 RIYAKLGVRSRSELAAR 902


>gi|167614994|ref|ZP_02383629.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257141572|ref|ZP_05589834.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 116 AGIAFPVR--LGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELF-- 164
            G   P+    G       +   +   +         + ++E      ++          
Sbjct: 74  RGATLPIIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRAMKLAMQRHAADCR 133

Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++       LT RE   L+   DG  S++IA  L +SV TV+ +  S   KL A +   
Sbjct: 134 RRELRRRIDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAA 193

Query: 224 AIA 226
            + 
Sbjct: 194 LVR 196


>gi|126665850|ref|ZP_01736831.1| adenylate/guanylate cyclase/hydrolase, alpha/beta fold family
           protein [Marinobacter sp. ELB17]
 gi|126629784|gb|EBA00401.1| adenylate/guanylate cyclase/hydrolase, alpha/beta fold family
           protein [Marinobacter sp. ELB17]
          Length = 307

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT R+   L     G ++ EIA+ L ++  TV  ++ +   KLD  +R Q I +A   G
Sbjct: 244 ELTPRQRMILDRVARGQSNIEIAQALSIASKTVRNHVSAICSKLDISSRAQLIVQAREKG 303

Query: 233 Y 233
           +
Sbjct: 304 F 304


>gi|89899936|ref|YP_522407.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89344673|gb|ABD68876.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 201

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 11/156 (7%)

Query: 88  IWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG--FHKNGYVIFTSEFLMLA 142
            W+    +       S  +L   L         I           +  ++    +F+   
Sbjct: 46  DWRGCVVVDIRMPGMSGLELQRCLRERGPSLPVIVITAHGDVAAARQAFLADAVDFIEKP 105

Query: 143 NE--VIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEK 197
            +   ++ A                + +        L+ RE   + L   G  +  IAE 
Sbjct: 106 FDGKQLLGAIENALSGFRALDTAQARAAFTKPTLGQLSIREREVMTLMVKGLHNRRIAET 165

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LG+S  TV  +      KL A N +  +   +  G 
Sbjct: 166 LGISPRTVEVHKARVMEKLGAQNIVDLVRL-VDKGL 200


>gi|300722891|ref|YP_003712186.1| response regulator (activator) in two-component regulatory system
           wtih UhpB [Xenorhabdus nematophila ATCC 19061]
 gi|297629403|emb|CBJ90004.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 205

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 11/123 (8%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGA----CYQV---ITDFLELF 164
             I   V          +            + + +++A          +   I   L   
Sbjct: 74  TCIMLSVHDSATMVENALKAGARGYLSKRCSPDELLQAVRTTANNGCYLTPDIVHKLTSS 133

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           K   +A  +LT+RE    ++   G   + +A +LGLS  TV+ +  +A  KL  VN +  
Sbjct: 134 KNNPTALDHLTKRERQVGEMLARGMDVKAVAAELGLSHKTVHVHRANAMSKLGVVNNVGL 193

Query: 225 IAK 227
              
Sbjct: 194 ANY 196


>gi|291615036|ref|YP_003525193.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291585148|gb|ADE12806.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 228

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 162 ELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            L  KRS  A    LT R+   L     G  ++EI++++ L+  TV  +  +    L A 
Sbjct: 144 SLSSKRSQRAAKFGLTSRQLEVLTYLASGLANKEISKRMNLAEGTVKIHTAAVYQALHAN 203

Query: 220 NRIQAIAKAIRFGYI 234
           +R++A++ A R G++
Sbjct: 204 SRLEAVSAARRLGFL 218


>gi|221200551|ref|ZP_03573593.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia multivorans CGD2M]
 gi|221206231|ref|ZP_03579245.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia multivorans CGD2]
 gi|221174243|gb|EEE06676.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia multivorans CGD2]
 gi|221179892|gb|EEE12297.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia multivorans CGD2M]
          Length = 277

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 12/220 (5%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
           H    +I                     L+ +L                   D       
Sbjct: 57  HARLRQIGFSTLGYGAYEMIGRRILCAHLLRDL--APPSFMQPYIEGALYESDPRFAQVR 114

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVIFTSE 137
               P+ W+  + E   +  G   V    G L      +G+ F +          +  + 
Sbjct: 115 QSGFPVAWRLDEIEAAAQRGGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAVNLTS 174

Query: 138 FLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191
                  + + VI  A      V    L   + R +  R   L + +   L+    G + 
Sbjct: 175 ETHGTDWIDDRVIGGALAVSLAVHRVALPFLEARVARMRGFALGDEQQQVLERLVHGLSD 234

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +EIA  L  S+H V  ++ S     +  NR Q    A R 
Sbjct: 235 QEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274


>gi|254478643|ref|ZP_05092015.1| transcriptional regulator, LuxR family protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035419|gb|EEB76121.1| transcriptional regulator, LuxR family protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 204

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 116 AGIAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAAR 172
             IA P+ +G  +  GYV  ++    + +EV++       ++ T++ ++   K+ +    
Sbjct: 80  HCIASPIIVGNGEIAGYVDISTIDKKIVDEVLMVIKLLAEKIATEYEKIVKEKELNKIKI 139

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L + +T  L L   GY   +IAE LG+ V TV  +      KL   N  +A+AKAI+ G
Sbjct: 140 KLNDSQTKILALEAKGYRESDIAEALGIGVVTVKYHKRKIVEKLGVKNIKEAVAKAIKLG 199

Query: 233 YI 234
            I
Sbjct: 200 LI 201


>gi|94970756|ref|YP_592804.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552806|gb|ABF42730.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 209

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 1/115 (0%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERE 178
            P+ +   K+G + F ++     + + +        V    +E  +    +    LT RE
Sbjct: 90  IPMTVRAMKSGALEFLTKPFEPEHLLSVVEQALACDVARLAVEAEEAALRARYEMLTRRE 149

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
              + L   G+ +++IA +LG S  T+  + G   +K+ A +  + +  A R   
Sbjct: 150 REVMGLVVSGFLNKQIASELGTSEITIKVHRGRVMLKMQAGSLAELVRMAERLHL 204


>gi|329936870|ref|ZP_08286549.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329303795|gb|EGG47679.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 244

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERE 178
           +R G         T+  L+ A E ++               +   R++ A     L+ RE
Sbjct: 111 LRAGATGVLAADITAVQLLAALETVLRGGLVVVLGAAPAPAVPGPRTAGAGVVGTLSLRE 170

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L L   G  +  IA  L +S  TV  ++     KL    R  AIA A   G +
Sbjct: 171 RQVLTLLASGRGTPAIATALRISPLTVKTHIAHLLSKLGVSRRGHAIAFAYEHGLV 226


>gi|307328810|ref|ZP_07607980.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885475|gb|EFN16491.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +  +  S    LT RE         G+++ +IA  L +S  TV  +L     KLDA NR
Sbjct: 142 AVAPQARSRMAELTAREREVAVAVAQGHSNSQIATDLFVSQSTVKVHLSRIMTKLDAANR 201

Query: 222 IQAIAKAIRFGY 233
            Q        G 
Sbjct: 202 TQVALITHDAGL 213


>gi|300113092|ref|YP_003759667.1| LuxR family two component transcriptional regulator [Nitrosococcus
           watsonii C-113]
 gi|299539029|gb|ADJ27346.1| two component transcriptional regulator, LuxR family [Nitrosococcus
           watsonii C-113]
          Length = 225

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++ +     LT RE   + L   G  ++ IA  L +S+ TV  + G    KL    +  
Sbjct: 152 REEITIRMMRLTPREREVMALVLKGRPNKLIASDLDISIKTVEIHRGQVMRKLQVRTQAD 211

Query: 224 AIAKA 228
            I  A
Sbjct: 212 LIHLA 216


>gi|299066606|emb|CBJ37796.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum CMR15]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176
            P+ +   K G V F           + E                +++ +A      LT 
Sbjct: 97  VPMAVSTMKKGAVDFI--EKPFDESELRELVERMLSKARTEDSAAREQKAANDLLSRLTT 154

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           RE   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|293394905|ref|ZP_06639195.1| response regulator protein [Serratia odorifera DSM 4582]
 gi|291422656|gb|EFE95895.1| response regulator protein [Serratia odorifera DSM 4582]
          Length = 210

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           NLT R+   L +   G+ +++IA +L +S  TV  ++ +   K+   +R++AI
Sbjct: 147 NLTSRQLEVLTMMMRGFPNKKIALQLAISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|289669289|ref|ZP_06490364.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 200

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 40/64 (62%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ERE + L+LAG+G ++ EIA++L LS  TV  YL     KL   NRI+A   A +
Sbjct: 137 ADPLSERERTILRLAGEGRSTSEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 196

Query: 231 FGYI 234
            G++
Sbjct: 197 KGWL 200


>gi|269102895|ref|ZP_06155592.1| transcriptional regulatory protein UhpA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162793|gb|EEZ41289.1| transcriptional regulatory protein UhpA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 202

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +    A+ +LT+RE     L   G   + +A +LGLS  TV+ +  +A  KL   N ++ 
Sbjct: 134 EDDEQASVHLTKREREIGLLLAKGLDVKTVAAELGLSHKTVHVHRANAMEKLGVKNNVEL 193

Query: 225 IAK 227
              
Sbjct: 194 AQY 196


>gi|260779032|ref|ZP_05887924.1| BarA-associated response regulator UvrY [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605196|gb|EEX31491.1| BarA-associated response regulator UvrY [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSPASENPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 ISGDVELTHLAIRHGML 209


>gi|254713235|ref|ZP_05175046.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M644/93/1]
 gi|254716411|ref|ZP_05178222.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M13/05/1]
          Length = 245

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229


>gi|227489471|ref|ZP_03919787.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090649|gb|EEI25961.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 280

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   EV  E    C Q+I         R      L+ RE   L     G+T+ E A++
Sbjct: 189 NRITDEEVRNELEVLCDQMIAPV------RIKPTTKLSARELDVLSCVALGHTNVEAAKE 242

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 243 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 277


>gi|289808445|ref|ZP_06539074.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 107

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT+RE   L L   GY++E+IA +L ++  T+  ++ +   KL   +R  A+  A + 
Sbjct: 41  PLTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 99


>gi|221633727|ref|YP_002522953.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
 gi|221157126|gb|ACM06253.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
          Length = 246

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RET  LQL   G +++EIA+ L L+  TV   L     KL   +R QA   A+  G
Sbjct: 171 RLTRRETQLLQLVASGLSNKEIADVLSLAESTVKNRLSLLFDKLGVKDRTQAAIFALANG 230

Query: 233 YI 234
            +
Sbjct: 231 VL 232


>gi|73537502|ref|YP_297869.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72120839|gb|AAZ63025.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 215

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 12/143 (8%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVI----- 157
           L  RL         +    +         V   +   +   + + E   AC+ V+     
Sbjct: 73  LLNRLARRHRGTRIVVVSAQSNAAIIRRAVKLGARAFVSKEDELEETLRACFHVMTSESC 132

Query: 158 ------TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
                    L+      + A +LT RE   ++L   G    EIA KLG SV T+++    
Sbjct: 133 YYSPSIRAILDDAAMVDAPATDLTLRELEVVRLYAQGMQLNEIAAKLGRSVSTISSQKTV 192

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
           A  KL        I  A   G I
Sbjct: 193 AMRKLGVNTNTDLIRYAYENGLI 215


>gi|158318162|ref|YP_001510670.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113567|gb|ABW15764.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 238

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 36/85 (42%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A G     +                L+ERE   L+    G ++ EIA +L +S  TV A+
Sbjct: 135 ASGRLLGALRTGAVADLAVRRRFERLSERELQVLRAMARGASNREIAIELRVSERTVKAH 194

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233
           +GS   KL+  +R  AI  A   G 
Sbjct: 195 VGSIFGKLEVRDRAGAIVLAHDVGL 219


>gi|238765471|ref|ZP_04626390.1| two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238696295|gb|EEP89093.1| two-component response regulator [Yersinia kristensenii ATCC 33638]
          Length = 176

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAE 196
            +  +V+IE            L ++K+++S  +    L+ RE     L   G TS++IA 
Sbjct: 80  PIDADVLIETISMALDQHEQALVVYKRQASYQQLFNQLSAREREVATLIIQGETSKQIAH 139

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
            L +S  TV A+  +   KL+  +    I 
Sbjct: 140 ILSISPRTVEAHRANIFAKLEVNSLASLIH 169


>gi|209520725|ref|ZP_03269474.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|295676955|ref|YP_003605479.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
 gi|209498850|gb|EDZ98956.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|295436798|gb|ADG15968.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 214

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++A R   LT R
Sbjct: 96  VPMAVSTMKKGAMDFI-EKPFDEAELRKLVERMLDKARSESTSVQQQRAAAERLGKLTAR 154

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 155 EHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 206


>gi|134098243|ref|YP_001103904.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004336|ref|ZP_06562309.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910866|emb|CAM00979.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 218

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 151 GACYQVITDFLELFKKRSSA--------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                V    L  F  R+S            LT RE   L L G G ++  IA+ LG + 
Sbjct: 124 MLSPSVTRRLLSHFADRNSPRGPTAVRGLDELTPRERQILSLVGGGLSNASIAKTLGATE 183

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            TV  ++    +KLD  NR+Q    A   G 
Sbjct: 184 STVKGHVSRLLMKLDCENRVQLALIAHNAGI 214


>gi|111020427|ref|YP_703399.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819957|gb|ABG95241.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 763

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 165 KKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           ++R+  A    LT+RE     L   G ++ +IAE L +S  TV+ ++     KL   +R 
Sbjct: 685 ERRAPRAEASPLTKREQEIADLLAQGLSNRQIAEALVISRRTVDGHVEHIFDKLAVSSRT 744

Query: 223 QAIAK 227
           Q  A 
Sbjct: 745 QVAAW 749


>gi|313201168|ref|YP_004039826.1| LuxR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312440484|gb|ADQ84590.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688]
          Length = 348

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 30/89 (33%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +        Q       L   R S    L+ RE          ++ +EIA + GLS  T
Sbjct: 236 QLPIGIYLNQQQAGGLTRLDIGRPSPLDKLSRREREVALGFAQAHSYKEIAAETGLSPAT 295

Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           V  YL     KL   ++ + +    R   
Sbjct: 296 VRHYLRGIYAKLAINDKAELVRLVTRHEL 324


>gi|260756053|ref|ZP_05868401.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759277|ref|ZP_05871625.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760999|ref|ZP_05873342.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|261316853|ref|ZP_05956050.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261751522|ref|ZP_05995231.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|265987924|ref|ZP_06100481.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992398|ref|ZP_06104955.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994141|ref|ZP_06106698.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|260669595|gb|EEX56535.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671431|gb|EEX58252.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676161|gb|EEX62982.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|261296076|gb|EEX99572.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261741275|gb|EEY29201.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262765122|gb|EEZ11043.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003464|gb|EEZ15757.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264660121|gb|EEZ30382.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
          Length = 254

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 186 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238


>gi|258653176|ref|YP_003202332.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556401|gb|ACV79343.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 204

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 123 RLGFHKNGYVIFTSEFL--MLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERE 178
           R G+ +       + F+      E +++A    +Q +         +  +     LT RE
Sbjct: 89  RPGYLRRAMEAHAAGFMVKDAPPETLLDAIRRVHQGLRVVDPDLAAESLALGESPLTGRE 148

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L    DG T  +IA +L LS  TV  +L S   K  A  R  A+  A   G+I
Sbjct: 149 RDVLLATADGGTVSQIAGRLFLSEGTVRNHLSSVIGKTGAATRADALRIATDRGWI 204


>gi|284990174|ref|YP_003408728.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063419|gb|ADB74357.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 201

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 8/169 (4%)

Query: 72  YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131
            GD+ L              +  E   +     +  L   L     +             
Sbjct: 35  RGDEVLAAAREHTP--DVALLDIEMPGQDGIDAARELAAELPGVRAVVLTTFGRPGFLRR 92

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETSCLQLA 185
            +       L  +  +       + +     +  +  +A      A  L+ RE   L+ A
Sbjct: 93  AMEVGAAGFLVKDAPVAELAKAIRAVVAGERVIDRDLAAAALAIGATPLSTREADVLREA 152

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            DG T  +IA +L LS  TV  YL SA  K  A  R++A   A   G++
Sbjct: 153 ADGATVADIARRLFLSEGTVRNYLSSAIGKTGARTRVEAARVAADKGWL 201


>gi|327483910|gb|AEA78317.1| BarA-associated response regulator UvrY [Vibrio cholerae LMA3894-4]
          Length = 188

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 107 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 166

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR+G +
Sbjct: 167 INGDVELTHLAIRYGIL 183


>gi|312796728|ref|YP_004029650.1| transcriptional regulatory protein fixJ [Burkholderia rhizoxinica
           HKI 454]
 gi|312168503|emb|CBW75506.1| Transcriptional regulatory protein fixJ [Burkholderia rhizoxinica
           HKI 454]
          Length = 207

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTER 177
            P+ +   K G + F  E      E+         +  T+     ++R++A R   LT R
Sbjct: 93  VPMAVSTMKKGAMDFI-EKPFDEAELRQLVERMLERARTESSTAQQQRAAAERLSKLTAR 151

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L     G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 152 EQQVLGRIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 203


>gi|298245547|ref|ZP_06969353.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553028|gb|EFH86893.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 201

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
              ++G V F  +    +   I        + + D        S     LT RE   L  
Sbjct: 92  RAMESGVVGFLLKDAPASELAIALRRVMAGERVVDPDLALAALSEGMNPLTPREREVLAA 151

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              G +  EIA +L LS  TV  +L +A  KL+A NR++A   A + G++
Sbjct: 152 TLPGISHAEIATRLALSEGTVRNHLSAAMQKLEARNRMEAARLAEQKGWL 201


>gi|229589824|ref|YP_002871943.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361690|emb|CAY48571.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 219

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           NLTERE   L L   G ++++I  +LG+S  TV  Y+ S   KL   +R++  A 
Sbjct: 152 NLTEREGQTLALIAAGMSNKQIGRELGISDGTVKIYVRSLLQKLGLHSRLELAAW 206


>gi|297189985|ref|ZP_06907383.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718642|gb|EDY62550.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 380

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 38/73 (52%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
           +F+ +     SA   L+ RE   ++L   G T+  IA +L ++  T  A++     KL+A
Sbjct: 304 EFVRVAPPTPSALALLSRREIEVMELLAGGATNRVIAARLVVAESTAKAHVAQILRKLEA 363

Query: 219 VNRIQAIAKAIRF 231
            NR +A+ K +R 
Sbjct: 364 RNRAEAVTKYLRL 376


>gi|320201466|gb|EFW76046.1| transcriptional regulator FimZ [Escherichia coli EC4100B]
          Length = 210

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE + L+    G +++EI++KL LS  TV+A+  +   KL   + ++ I  A  +  
Sbjct: 150 LSNREVTILRYLVSGLSNKEISDKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYEL 209

Query: 234 I 234
           I
Sbjct: 210 I 210


>gi|299147852|ref|ZP_07040915.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|298514035|gb|EFI37921.1| transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 259

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L+    G +S+EIA  L +SV+TVN +  +   KL   N I+A   A     
Sbjct: 197 LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256

Query: 234 I 234
           +
Sbjct: 257 L 257


>gi|237714874|ref|ZP_04545355.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262406858|ref|ZP_06083407.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|294647174|ref|ZP_06724773.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294809214|ref|ZP_06767930.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298483630|ref|ZP_07001805.1| transcriptional regulator [Bacteroides sp. D22]
 gi|229445199|gb|EEO50990.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262355561|gb|EEZ04652.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292637461|gb|EFF55880.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443608|gb|EFG12359.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|295084732|emb|CBK66255.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
 gi|298270200|gb|EFI11786.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 259

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L+    G +S+EIA  L +SV+TVN +  +   KL   N I+A   A     
Sbjct: 197 LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256

Query: 234 I 234
           +
Sbjct: 257 L 257


>gi|114763261|ref|ZP_01442685.1| putative transcriptional regulator protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544059|gb|EAU47069.1| putative transcriptional regulator protein [Roseovarius sp.
           HTCC2601]
          Length = 241

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +        LT ++   ++L   G  +++IA +L L+  TV A++ +   +L   NR QA
Sbjct: 156 EALHPKLAELTPQQQRIMKLICAGKPNKQIAYELSLAEATVKAHITALLRRLGVQNRTQA 215

Query: 225 IAK 227
              
Sbjct: 216 AVL 218


>gi|330888767|gb|EGH21428.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str.
           301020]
          Length = 74

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
           +E+   + S A+NLT+RE   L+ + +G T+ +IA  L L   T++ ++ SA  K+   N
Sbjct: 1   MEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCN 60

Query: 221 RIQAIAKAIRFG 232
           +  A  +A   G
Sbjct: 61  KTAAAVQAALSG 72


>gi|325919524|ref|ZP_08181543.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325923815|ref|ZP_08185429.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325545709|gb|EGD16949.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325550000|gb|EGD20835.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 200

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ERE + L+LAG+G ++ EIA++L LS  TV  +L     KL   NRI+A   A +
Sbjct: 137 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNHLSECIGKLGVANRIEAYRLARQ 196

Query: 231 FGYI 234
            G++
Sbjct: 197 KGWL 200


>gi|319787310|ref|YP_004146785.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465822|gb|ADV27554.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 217

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERETSCL 182
             +GY+    +   L   V   A+G             L   ++  S    L+ RE    
Sbjct: 100 GASGYIGKAGDARELLRAVRDVANGKRYLGSSVAQNMALAGVERGGSPFDVLSPRELEVA 159

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            L   G   E IA +L LS  TVN +      K+   + I     A R+G 
Sbjct: 160 MLLVQGLRQEMIARRLKLSAKTVNTHKSRLFEKIGVQDSIALARLAARYGL 210


>gi|319785858|ref|YP_004145333.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464370|gb|ADV26102.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 221

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
               + +   R LT ++   LQ+ G+G  +++IA  LG+S  T+ A++ +   KL   NR
Sbjct: 137 RDEHEVAQRLRELTPQQFRVLQMLGEGRLNKQIAYDLGVSEATIKAHVTAVLRKLGVGNR 196

Query: 222 IQAIAKAIRF 231
            QA+  A R 
Sbjct: 197 TQAVLMAGRL 206


>gi|310640465|ref|YP_003945223.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245415|gb|ADO54982.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 589

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
              GYV+ T +   LAN + +  H       +V     +           LTERE   L 
Sbjct: 477 GAEGYVLKTIDPRELANTIRLVHHGGTMITQEVAGTLFQQMTGTMKNPYGLTERELEILH 536

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
              +G+  + IA K+ LS  TV  Y+ +   K+   +R +AI KA
Sbjct: 537 CLTEGHRYKAIASKVHLSEGTVRNYISTIYSKMQVQSRDEAIEKA 581


>gi|300788717|ref|YP_003769008.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798231|gb|ADJ48606.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L LA  G T  +IA +L LS  TV  YL +   KL+A NR+ AI  A    
Sbjct: 140 PLTPREIEILSLAARGRTVSDIASELFLSAGTVRNYLAAVVTKLNARNRVHAIRIATEAE 199

Query: 233 YI 234
           ++
Sbjct: 200 WL 201


>gi|240140122|ref|YP_002964599.1| putative response regulator; input and output domains: CheY and
           LuxR family [Methylobacterium extorquens AM1]
 gi|240010096|gb|ACS41322.1| putative response regulator; input and output domains: CheY and
           LuxR family [Methylobacterium extorquens AM1]
          Length = 300

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 10/112 (8%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
             +     +   + F            I    +          L ++       +T RE 
Sbjct: 194 LTLTDAQGRIHTLSFIGRTGPE-----ILLRLSGDPAAAGLERLRERL-----PITGREA 243

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L     G +S +I E LGLS  TV  +L     KL   NR  A A A R 
Sbjct: 244 EVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295


>gi|12642200|gb|AAK00179.1|AF222754_7 probable nodulation protein [Bradyrhizobium sp. WM9]
          Length = 227

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++  S    L+ RE   L+L   G  ++++A +LGL+  TV  Y G    K+ A +    
Sbjct: 150 RRLQSLFEALSPREQDVLKLVAAGLLNKQVAAELGLAEITVKIYRGHMMKKMGARSLADL 209

Query: 225 IAKAIRFGY 233
           I  A R G 
Sbjct: 210 IRMAERLGI 218


>gi|267027596|gb|ACY78510.1| LuxR type regulator [Corynebacterium stationis]
          Length = 279

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +    +  E    C Q+++        R   +  L+ RE   L     G+T+ E AE+
Sbjct: 188 NRVEDESLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 241

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 242 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276


>gi|237718307|ref|ZP_04548788.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229452491|gb|EEO58282.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 259

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L+    G +S+EIA  L +SV+TVN +  +   KL   N I+A   A     
Sbjct: 197 LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256

Query: 234 I 234
           +
Sbjct: 257 L 257


>gi|229519850|ref|ZP_04409284.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80]
 gi|229343138|gb|EEO08122.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80]
          Length = 265

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 52/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 25  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 81

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   ++  V     +
Sbjct: 82  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERSIVVYLGCFK 141

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 142 PRSFPREQIAALQQRFTVLQALCQQHWQKQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 201

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIA+ L +S  TV  +      +L   +  + 
Sbjct: 202 SPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYAQLHVSSLSEL 251


>gi|253699116|ref|YP_003020305.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251773966|gb|ACT16547.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 34/74 (45%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              +  +  +   NL+ RE   LQL  DG  ++EIA   G+SV TV     S   KLD  
Sbjct: 139 LQRIPDEVPATYENLSLREREILQLIADGKNAKEIAFSFGVSVKTVENQRHSIMKKLDLF 198

Query: 220 NRIQAIAKAIRFGY 233
           +  +    A+R G 
Sbjct: 199 SIAELTKYAVRQGL 212


>gi|241666751|ref|YP_002984835.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862208|gb|ACS59873.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 222

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
              VI E   A  +   +   L          LT RE   ++   +G  ++++A KL +S
Sbjct: 123 DPAVIAEEVNASIRAFNEANRLEAYFL----TLTPRERQVMKFVVEGLLNKQVAFKLNIS 178

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             TV A+ G    K++A      +  A R G
Sbjct: 179 EITVKAHRGRLMRKMNARTLPDLLYMAARLG 209


>gi|160898545|ref|YP_001564127.1| LuxR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364129|gb|ABX35742.1| transcriptional regulator, LuxR family [Delftia acidovorans SPH-1]
          Length = 163

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT RE   L+    G   ++IA  LG+S HTV  +  +   +L   N ++ +  A R
Sbjct: 27  ASALTAREIDVLEAMAKGLGCKDIAHTLGISEHTVRKHRSNMCTRLGLRNAVELVTHARR 86

Query: 231 FGYI 234
            G++
Sbjct: 87  QGWL 90



 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            L+ RE   L     G+TS+EIA  L LS  TV  +  +   KL   +  Q    A
Sbjct: 98  PLSPREQEVLAHVLAGHTSKEIARSLYLSDLTVRKHRENILRKLGLTSTAQLQTFA 153


>gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
 gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
          Length = 295

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            +T+RE+  L     G TS EI+  L +S  TVN +L     KL   NR  A A +IR
Sbjct: 234 PITKRESEVLYWVSYGKTSWEISLILEMSPRTVNKHLEQIYKKLGVDNRTSAAAISIR 291


>gi|56695084|ref|YP_165431.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56676821|gb|AAV93487.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 204

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT----ERETSC 181
               G   F  + L   + +         +V      L    + +   LT     RE   
Sbjct: 92  AVDAGAAGFVPKTLAAKSLLHAVRFMIAGEVFVPSTVLQAPEAPSDGGLTATLSRREKQV 151

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L     G  ++EIA +L L   T+  ++ +   KL+A NR QA   A   G+
Sbjct: 152 LGGLCRGLPNKEIARELDLQEVTIKLHVRTLCKKLNAKNRTQAAMIARDAGF 203


>gi|121996833|ref|YP_001001620.1| two component LuxR family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121588238|gb|ABM60818.1| two component transcriptional regulator, LuxR family
           [Halorhodospira halophila SL1]
          Length = 216

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 138 FLMLANEVIIEA--------HGACYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGD 187
                 + +IEA           C++V        L     S   +LT RE   L    +
Sbjct: 103 HKGADRDELIEAIRSVYLGRRYICHEVARHVALNSLDGTGESPFDHLTPREFEVLMRILN 162

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G     IA+ L LS  TV+ Y      +L   N  Q    AI +G +
Sbjct: 163 GQRGTSIAKDLCLSPKTVSTYRSRIFERLGVRNDAQLTRIAIDYGLL 209


>gi|84501462|ref|ZP_00999667.1| putative transcription regulator protein [Oceanicola batsensis
           HTCC2597]
 gi|84390753|gb|EAQ03241.1| putative transcription regulator protein [Oceanicola batsensis
           HTCC2597]
          Length = 232

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + R   A  LT RE   L+L   G  ++ IA  LGLS HTV  ++     KL+  NR  A
Sbjct: 154 RPRLDDAAGLTGRELQVLELVSAGKQNKSIANDLGLSEHTVKLHIHHVLAKLNVRNRTGA 213


>gi|328755742|gb|EGF69358.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
          Length = 206

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 2/109 (1%)

Query: 125 GFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183
                G   F  +         ++    A  + I   L   +        L+ RE   L+
Sbjct: 97  RAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPALA-AESLIEGHNPLSGREREILR 155

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LA  G +   IA +L LSV TV  ++ SA  K  A NR +A   A R G
Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204


>gi|319796066|ref|YP_004157706.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598529|gb|ADU39595.1| regulatory protein LuxR [Variovorax paradoxus EPS]
          Length = 260

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 16/223 (7%)

Query: 21  LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80
           L  +Q  +      ++ ++S                 +    +          D  +   
Sbjct: 35  LRAMQRVMPVTFCTVFAVSSTGRIEAVSAASSYGSTAERT-TERYVEQRFDLLDPNMAWL 93

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLE--GGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138
            +  LP   Q        E     + R    G +      +  + L   +   V F    
Sbjct: 94  AARKLPQRPQLWLGHQRAEEVADPAYRAACYGDVGIRERASVLLLLPTGQRVAVSFYRSL 153

Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLA 185
                +    A    +  +         RS+ A               L+ RE   +   
Sbjct: 154 AQPEFDATDFARIEAHATLLADATAAHGRSAMAVRESVVPALASRLLTLSLREREVIGHL 213

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             G T++E A +LG+ + TV  +   A  +L   ++ + + +A
Sbjct: 214 MAGKTAKEAARELGVELTTVRTHQYRAFRRLGIRSQKELLLRA 256


>gi|255039009|ref|YP_003089630.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
 gi|254951765|gb|ACT96465.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
          Length = 267

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 34/68 (50%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R      LT RE   L + G G  S+EI+  L +SVHTVN +      KL A N I+A+ 
Sbjct: 199 RIDPGIKLTSREKEILGMIGKGKLSKEISALLDISVHTVNTHRQRILEKLHADNSIEALQ 258

Query: 227 KAIRFGYI 234
            A   G +
Sbjct: 259 SAKMIGLL 266


>gi|91786468|ref|YP_547420.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91695693|gb|ABE42522.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 297

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 60/215 (27%), Gaps = 22/215 (10%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI--- 67
            + L E    L              Y +          +L     N  +       +   
Sbjct: 89  MTGLSETPHVLEGFA-CGGVD----YVVKPLRAQEVVARLHTHTRNARMTRLAREAVDVA 143

Query: 68  -LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126
                  D             +W    E   + ++G+L   +   L         +    
Sbjct: 144 GFGVVLVDAKGRVAWRSPQAALWLQTPE--GLAAAGELPDPVHAALGGKTDQV--LMTLA 199

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
            +   V       +    +++E  GA     +           A   LT RET  L    
Sbjct: 200 GRQLSVRNMGRVGIGETMLLLEQRGANGMAPSRL---------ANAALTPRETEVLSWLA 250

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            G T+++I + LG+S  TVN +L     KL    R
Sbjct: 251 KGKTNKDIGDILGMSHRTVNKHLEHIFEKLGVETR 285


>gi|16080219|ref|NP_391046.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311111|ref|ZP_03592958.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315438|ref|ZP_03597243.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320354|ref|ZP_03601648.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324638|ref|ZP_03605932.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|296330772|ref|ZP_06873248.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675755|ref|YP_003867427.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321312713|ref|YP_004205000.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|116903|sp|P14204|CMPA_BACSU RecName: Full=Transcriptional regulatory protein ComA; AltName:
           Full=Competence protein A
 gi|142701|gb|AAA22320.1| A competence protein 1 [Bacillus subtilis]
 gi|1934772|emb|CAB07904.1| comAA [Bacillus subtilis subsp. subtilis str. 168]
 gi|2635663|emb|CAB15156.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|10119872|dbj|BAB13494.1| ComA respons regulator [Bacillus subtilis]
 gi|291485617|dbj|BAI86692.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
 gi|296152086|gb|EFG92959.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413999|gb|ADM39118.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|320018987|gb|ADV93973.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 214

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           +L  E++++       +     +           LT RE   LQ    G+T++EIA+ L 
Sbjct: 120 VLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECLILQEVEKGFTNQEIADALH 179

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LS  ++   L S   KL+  +R +A+  A   G +
Sbjct: 180 LSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL 214


>gi|332980886|ref|YP_004462327.1| LuxR family transcriptional regulator [Mahella australiensis 50-1
           BON]
 gi|332698564|gb|AEE95505.1| transcriptional regulator, LuxR family [Mahella australiensis 50-1
           BON]
          Length = 479

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT+RE+  + L  +G T   IA +L LS +TV  ++ +   K    +R + I   +  
Sbjct: 416 QLTKRESEIVALLLEGKTYRMIAGELHLSENTVKTHIKNVYAKYKIQSRAELINIMLEQ 474


>gi|324999047|ref|ZP_08120159.1| transcriptional regulatory protein DegU [Pseudonocardia sp. P1]
          Length = 220

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---------CYQVITDFLELFKKRSSAARNL 174
           L     GY++       L  ++ + A G                  LE  +    A   L
Sbjct: 100 LRAGAAGYLLKRIGGEELVRQLELAATGVTVVDATMAGRAAASAARLERNEFWPGARLGL 159

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           T RE+  L L   G+++  +A +L +   TV +++ S   KLD  +R  A+A A+R G
Sbjct: 160 THRESEVLALLVAGHSNRSVAAELVIGEETVKSHVRSVLRKLDVPDRTAAVAAALREG 217


>gi|315222100|ref|ZP_07864010.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188850|gb|EFU22555.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 227

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            ++++ E   +Q  G G +++EIA KL LS  TV  YL     +L+  +R Q    A++ 
Sbjct: 155 EDMSQTEWKIIQQIGFGVSNKEIAAKLFLSEGTVRNYLSGILAELNLRDRTQLAIWAVQT 214

Query: 232 G 232
           G
Sbjct: 215 G 215


>gi|312960767|ref|ZP_07775272.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284425|gb|EFQ63001.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 206

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT R+    +L   G T++EIA +L +S +TV  ++ S    L+  NR  A+A A   G
Sbjct: 145 KLTSRQREVWRLIAQGKTNKEIAAELEISPYTVRIHVSSLIRVLNVPNR--AVAAARFAG 202


>gi|154245688|ref|YP_001416646.1| response regulator receiver protein [Xanthobacter autotrophicus
           Py2]
 gi|154159773|gb|ABS66989.1| response regulator receiver protein [Xanthobacter autotrophicus
           Py2]
          Length = 213

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 112 LLPFAGIAFPVR--LGFHK-----NGYVIFTSEFLMLANEVIIEAHGACYQVITD----- 159
            L   G   PV    G            +  ++FL    + +         +        
Sbjct: 75  HLQEKGSTVPVIVVTGHGDVPLAVEAMKLGAADFLEKPFDDVAILDTVKSALARREKAYQ 134

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
              L ++ S     L++RE   L+    G  ++ IA +LG+S  TV  Y  +   K+ A 
Sbjct: 135 HDALREQVSERIAALSQRERQVLECLVVGQANKTIAYELGISPRTVEVYRANVMTKMKAQ 194

Query: 220 NRIQAIAKAIRFGY 233
           +  + +  A+  G 
Sbjct: 195 SLSELVRMALLAGI 208


>gi|84496282|ref|ZP_00995136.1| putative two-component system response transcriptional regulator
           [Janibacter sp. HTCC2649]
 gi|84383050|gb|EAP98931.1| putative two-component system response transcriptional regulator
           [Janibacter sp. HTCC2649]
          Length = 218

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G  + TS   + + E +++A            +    R +    L+ +E   L+    G
Sbjct: 110 RGADLVTSIRRVASGENLLDAGVVARLRTGWGRDAEDPRLAP---LSPQERRILEHIAQG 166

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            T+ +I + + L+  TV  Y+ S   K+   +R QA       G
Sbjct: 167 LTNRQIGQAMSLAEKTVKNYVTSVLAKMGLESRTQAAVYVASQG 210


>gi|90419335|ref|ZP_01227245.1| two-component, nitrogen fixation regulatory protein fixJ
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90336272|gb|EAS50013.1| two-component, nitrogen fixation regulatory protein fixJ
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 206

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +     ++L+ RE   L     G+ ++ IA  LGLS  TV  +  +   K++A +  + +
Sbjct: 135 RIQGRLQSLSPRERQVLDGLLAGHPNKTIAYDLGLSPRTVEVHRANVMTKMEASSLSELV 194

Query: 226 AKAIRFG 232
             A+R G
Sbjct: 195 RMAVRAG 201


>gi|17232904|ref|NP_489442.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134894|dbj|BAB77450.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 223

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              TER+   L+L   G   ++IA+++ LSV TV  Y      K    NR +AI +    
Sbjct: 153 DPPTERQIQVLRLLAQGLVFQDIAKEMFLSVSTVKQYASDLYSKWHVKNRYEAIKRGAML 212

Query: 232 GYI 234
           GYI
Sbjct: 213 GYI 215


>gi|17227478|ref|NP_478660.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134944|dbj|BAB77499.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 223

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              TER+   L+L   G   ++IA+++ LSV TV  Y      K    NR +AI +    
Sbjct: 153 DPPTERQIQVLRLLAQGLVFQDIAKEMFLSVSTVKQYASDLYSKWHVKNRYEAIKRGAML 212

Query: 232 GYI 234
           GYI
Sbjct: 213 GYI 215


>gi|328883671|emb|CCA56910.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%)

Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
           H          +   ++       L+E+E   L L G+G ++ +   +L +S  TV  Y+
Sbjct: 136 HVVERLAAGREMTRAEEARGRVAGLSEKEREVLALLGEGLSNADAGRRLHMSEATVKTYV 195

Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233
                KLD  NR+QA   A   G 
Sbjct: 196 SRILAKLDCENRVQAALLARDAGL 219


>gi|306407932|dbj|BAJ16474.1| regulatory protein [Streptomyces graminofaciens]
          Length = 243

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               SS +  L+ +E   +     G +  EIA ++ L+  TV  YL     KL   +R Q
Sbjct: 168 RTGDSSPSLALSPQEREIMTRLASGLSVREIAVEMRLAEKTVRNYLSHIYGKLGVRSRSQ 227

Query: 224 AIAK 227
           A+ +
Sbjct: 228 ALLR 231


>gi|304392975|ref|ZP_07374906.1| glycerol metabolism activator [Ahrensia sp. R2A130]
 gi|303294973|gb|EFL89342.1| glycerol metabolism activator [Ahrensia sp. R2A130]
          Length = 279

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             + LT +++  L +   G  +++IA +L +S  TV A++ +   KL+  +R QA+ +  
Sbjct: 210 RLQTLTPQQSRVLSMISQGLLNKQIAYELSVSEATVKAHVSAVLSKLNVDSRTQAVIQIS 269

Query: 230 RFG 232
           + G
Sbjct: 270 KLG 272


>gi|304313067|ref|YP_003812665.1| DNA-binding response regulator [gamma proteobacterium HdN1]
 gi|301798800|emb|CBL47033.1| DNA-binding response regulator [gamma proteobacterium HdN1]
          Length = 221

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                    +S    L+ERE     +       +EI++KL LS  TVN+Y      KL  
Sbjct: 135 ALKPFSPAEASPFEQLSERELQIAMMIVGCQKVQEISDKLFLSPKTVNSYRYRIFEKLAI 194

Query: 219 VNRIQAIAKAIRFGYI 234
            + ++    A+R G +
Sbjct: 195 TSDVELTLMAVRHGMV 210


>gi|291437530|ref|ZP_06576920.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340425|gb|EFE67381.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 268

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RE   + L   G  +++IA    +S  TV  ++     KL + +R +A AK
Sbjct: 201 QLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAAK 255


>gi|261218196|ref|ZP_05932477.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320956|ref|ZP_05960153.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923285|gb|EEX89853.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293646|gb|EEX97142.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 254

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 186 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 238


>gi|251800174|ref|YP_003014905.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547800|gb|ACT04819.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2]
          Length = 229

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 157 ITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +   L L    ++ AA  L+E+E   +Q   DG+T++EIA  L ++  TV  ++ +  +K
Sbjct: 150 MKQLLHLKHSPAARAAYALSEKELRVMQYIADGFTTKEIAPFLNIAESTVKYFINNVMLK 209

Query: 216 LDAVNRIQAIAKAIRFGYI 234
             + NR +A+A   R   +
Sbjct: 210 TSSRNRTEAVANLYRANLL 228


>gi|163788538|ref|ZP_02182983.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1]
 gi|159875775|gb|EDP69834.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1]
          Length = 207

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            +   L++RE   L    +G + + IAE L +S +T+  +L +  +KL   + I+A+ KA
Sbjct: 142 PSKIELSKREKDVLLQLSEGNSYDSIAENLFISKNTIKFHLKNIYIKLQVNSNIEAVQKA 201

Query: 229 IRFGYI 234
            +   +
Sbjct: 202 NKENLL 207


>gi|108763932|ref|YP_633456.1| LuxR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108467812|gb|ABF92997.1| transcriptional regulator, LuxR family [Myxococcus xanthus DK 1622]
          Length = 902

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            E     S+    LTERE   L+L   G +++EI+E+  +++ T   +L +   KLD   
Sbjct: 827 REFAAPPSAPLEPLTERELQMLKLLAQGLSNQEISERSNVALSTTKWHLRNVFAKLDVTT 886

Query: 221 RIQAIAKAIRF 231
           R  AI KA   
Sbjct: 887 RTAAIVKAQER 897


>gi|37676721|ref|NP_937117.1| response repressor in two-component regulatory system with UhpB
           [Vibrio vulnificus YJ016]
 gi|326424246|ref|NP_762471.2| transcriptional regulatory protein UhpA [Vibrio vulnificus CMCP6]
 gi|37201264|dbj|BAC97087.1| response repressor in two-component regulatory system with UhpB
           [Vibrio vulnificus YJ016]
 gi|319999632|gb|AAO07461.2| Transcriptional regulatory protein UhpA [Vibrio vulnificus CMCP6]
          Length = 206

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I   L     ++++   LT RE    QL   G   + IA +LGLS  TV+ +  +A  KL
Sbjct: 130 IAMKLATPNDKATSLTQLTRRENEVCQLLARGLDVKSIAAELGLSHKTVHVHRANAIDKL 189

Query: 217 DAVNRIQAIAK 227
              N ++    
Sbjct: 190 GVKNNVELAKL 200


>gi|332526411|ref|ZP_08402533.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332110543|gb|EGJ10866.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 211

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERE 178
           L     GYV    E   + + V   A G  Y        L +  ++       + L++RE
Sbjct: 94  LRGGAFGYVNKGGEPRQIVDAVRTVAQGRKYVTPEIAQMLVESLTAPVLETPHQKLSDRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              L +   G    +IAE+L LS  TV+ Y      KL   N  +    AIR G +
Sbjct: 154 LQTLVMIASGKRLADIAEELMLSPKTVSVYRARVLEKLQLANNSELTVYAIRNGLV 209


>gi|313835697|gb|EFS73411.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928368|gb|EFS92199.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970220|gb|EFT14318.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
          Length = 228

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            L++R+   + L   G +++EI++ L L+  TV  ++      L    R QAI   ++
Sbjct: 163 GLSDRQAEVMDLIAAGQSNKEISKTLFLAEKTVKNHINQIFATLGVTTRAQAIVLWLQ 220


>gi|302868454|ref|YP_003837091.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302571313|gb|ADL47515.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 256

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L          L+ RE   L    +G ++ +IA +L L+  TV  +L +   KL AV+R
Sbjct: 157 SLDHVYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSR 216

Query: 222 IQAIAKAIRFGYI 234
           I A+ KA+    I
Sbjct: 217 IDAVNKAVAASII 229


>gi|266622694|ref|ZP_06115629.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288865559|gb|EFC97857.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 369

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            LT+ E    +L  +G T + IA++L +S HTV  ++ +   K    +R Q 
Sbjct: 309 PLTQAEQRVAELMYNGLTYKAIADELVISYHTVKKHVQNIYTKCGVKSRFQL 360


>gi|225626731|ref|ZP_03784770.1| Monoamine regulon transcriptional regulator [Brucella ceti str.
           Cudo]
 gi|237814663|ref|ZP_04593661.1| Monoamine regulon transcriptional regulator [Brucella abortus str.
           2308 A]
 gi|225618388|gb|EEH15431.1| Monoamine regulon transcriptional regulator [Brucella ceti str.
           Cudo]
 gi|237789500|gb|EEP63710.1| Monoamine regulon transcriptional regulator [Brucella abortus str.
           2308 A]
          Length = 257

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 189 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 241


>gi|15640491|ref|NP_230118.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121590711|ref|ZP_01678043.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|153819151|ref|ZP_01971818.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153823185|ref|ZP_01975852.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|227080674|ref|YP_002809225.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229507102|ref|ZP_04396608.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286]
 gi|229509062|ref|ZP_04398550.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229519730|ref|ZP_04409173.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229606243|ref|YP_002876891.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|254226311|ref|ZP_04919902.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|254850695|ref|ZP_05240045.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|298501005|ref|ZP_07010806.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9654890|gb|AAF93637.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121547442|gb|EAX57551.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|125621173|gb|EAZ49516.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|126510296|gb|EAZ72890.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126519311|gb|EAZ76534.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|227008562|gb|ACP04774.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229344419|gb|EEO09394.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229353987|gb|EEO18921.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229355847|gb|EEO20767.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286]
 gi|229368898|gb|ACQ59321.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|254846400|gb|EET24814.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297540253|gb|EFH76313.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 267

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 51/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 27  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 84  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 144 PRSFPREQITALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 203

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIAE L +S  TV  +      +L   +  + 
Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 253


>gi|114566607|ref|YP_753761.1| ATP-dependent transcriptional regulator-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337542|gb|ABI68390.1| ATP-dependent transcriptional regulator-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 823

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 5/130 (3%)

Query: 101 SGQLSVRLEGGLLPFAGIAFPV---RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI 157
                V          G+  P              +   ++  L  +             
Sbjct: 694 QAAAFVEDAARKALPDGLVSPFASYSQLLGDLVDEVIARDYPALLEKFKTVRKRFSQGWF 753

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           T    LF        +LTERE    +LA  G  + EIAEKL ++  TV +++ +   KL 
Sbjct: 754 TLREALFSGELPP--DLTEREYEVAKLAATGLRNSEIAEKLVITESTVRSHMRTIFQKLQ 811

Query: 218 AVNRIQAIAK 227
              R +   K
Sbjct: 812 IDRRTRLAEK 821


>gi|291299577|ref|YP_003510855.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568797|gb|ADD41762.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 212

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 44/110 (40%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184
                G   F  +   +             Q + D         +    LT+RE   L  
Sbjct: 103 RALDAGASGFLVKDGPVDGLARAIRSVVNGQTVIDPDLAAGAIRAGESPLTDREREVLAA 162

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A DG  + +IA++L LS  TV  YL SA  K    NRI+A+ KA   G++
Sbjct: 163 AEDGARATDIAKRLHLSDSTVRNYLSSAISKTGTRNRIEAVKKARELGWL 212


>gi|229490111|ref|ZP_04383959.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
 gi|229322987|gb|EEN88760.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
          Length = 243

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +   +   ++  +AA  LT++E    +L G G ++ EI+    LS  TV  Y+     KL
Sbjct: 134 LVRRIRSEQESGTAAALLTDQELLIFELIGKGLSNREISSHAELSEKTVKNYVSRILEKL 193

Query: 217 DAVNRIQAIAKAIRF 231
               R QA   A + 
Sbjct: 194 GLERRTQAAVLATKL 208


>gi|197106265|ref|YP_002131642.1| response regulator [Phenylobacterium zucineum HLK1]
 gi|196479685|gb|ACG79213.1| response regulator [Phenylobacterium zucineum HLK1]
          Length = 201

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 17/153 (11%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVR--LGFHKNGYVIFTSEFLMLAN------- 143
                  +  +L  RL        G+  PV    G       +   +  +          
Sbjct: 54  DVRMPEMNGLELVRRLRTR-----GVTQPVIVITGHGDVPLAVEAMKAGVADFLEKPFDD 108

Query: 144 EVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           E ++ A  A             +R    S    L+ RE   L+    G  ++ IA +LG+
Sbjct: 109 EALLSAVRAALDTRVQDDRQDAERQKFESMLAGLSPREQDVLRGVVAGKPNKIIAFELGI 168

Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           S  TV  Y  +   K  A +  + +  A+  G+
Sbjct: 169 SPRTVEVYRANVMTKTGASSLSELVRMALLAGF 201


>gi|192290784|ref|YP_001991389.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192284533|gb|ACF00914.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 210

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTE 176
            P+ +   K G V F ++     ++ +++A  A  ++     E   KR+        LT 
Sbjct: 90  VPMTVRGMKAGAVDFLTK--PFRDQEMLDAVSAAVELDRRRREAEHKRNEIVQRFDALTP 147

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           RE    ++   G  ++ +A  LGLS  TV  + G    K+ A +    +  A
Sbjct: 148 REKQIFEMVSAGSMNKNVAADLGLSEITVKIHRGRVMKKMGARSLADLVRMA 199


>gi|218531623|ref|YP_002422439.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218523926|gb|ACK84511.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
          Length = 300

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 42/155 (27%), Gaps = 12/155 (7%)

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +         ++      E +                  A +         +   + F  
Sbjct: 153 VLWCTPQAAQVLAALGASEPLSLPPSGRDWLARCLAGTAAPLTLT--DAQGRIHTLSFIG 210

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
                     I    +          L ++       +T RE   L     G +S +I E
Sbjct: 211 RTGPE-----ILLRLSGDPAAAGLERLRERL-----PITGREAEVLLWLSRGKSSRDIGE 260

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LGLS  TV  +L     KL   NR  A A A R 
Sbjct: 261 ILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295


>gi|149187707|ref|ZP_01866004.1| DNA-binding response regulator, LuxR family protein [Vibrio
           shilonii AK1]
 gi|148838587|gb|EDL55527.1| DNA-binding response regulator, LuxR family protein [Vibrio
           shilonii AK1]
          Length = 249

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 16/161 (9%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS---EFLMLANE 144
            WQ    E + + S      L      + GI   + L     G + F+    +   L+ E
Sbjct: 83  TWQMFDSEALAKHSLDPVKELYREGARWHGI-IRLELFGQTWGALAFSRFSLDEPPLSEE 141

Query: 145 VIIEAHGAC--------YQVITDFLELFK----KRSSAARNLTERETSCLQLAGDGYTSE 192
            +      C        +  +T  L L        S     L++++ + L L   GYT++
Sbjct: 142 NLKRLRLLCDIWLCFWQHATMTRNLSLDDSNAVDESEKLLLLSKKQCTVLTLLAQGYTAK 201

Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + AEKL LS  T+ ++       LD  N  + +  A+R G 
Sbjct: 202 QCAEKLFLSPRTIESHKYRMLDILDLDNHTELVQFALRNGL 242


>gi|152983891|ref|YP_001349304.1| LuxR family DNA-binding response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150959049|gb|ABR81074.1| DNA-binding response regulator, LuxR family [Pseudomonas aeruginosa
           PA7]
          Length = 210

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 9/145 (6%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF------HKNGYVIFTSEFLMLANEV 145
           +       +   L   L       A I   +             G   F  + +      
Sbjct: 55  LDLRFPGLTRIDLLADLRRRFPRTALIVVSMVDDPQLIAEVMDAGVDGFLGKSIAPEELG 114

Query: 146 IIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
                    +V+  +     L  + S+    LTER+   L+L   G +++EI   L +S 
Sbjct: 115 EAILAIRAGEVLVRYEPSGLLPLESSALLDGLTERQLDVLRLLAQGKSNKEIGRVLDISH 174

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227
           +TV  ++ S    LD  +R  A  K
Sbjct: 175 YTVRIHVSSLLKALDVPSRTAAAVK 199


>gi|59713286|ref|YP_206061.1| two component response regulator [Vibrio fischeri ES114]
 gi|59481534|gb|AAW87173.1| two component response regulator [Vibrio fischeri ES114]
          Length = 205

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 8/143 (5%)

Query: 91  SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150
           +I +  + E  GQ    L       + ++     G       +   +             
Sbjct: 58  AILDSRMPELRGQDVHELLKQ--QNSPLSVIFLTGHGDIPMAVDALKAGAADFFQKPVDG 115

Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
              +  I + L   +KR  +        +LT RE   L+L   G  ++++A+ + +S+ T
Sbjct: 116 EELFIAIKNGLAASEKRYKSQDAHRSYLSLTAREQEVLKLIVQGMKNQQMADAMCVSLRT 175

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           +  +  +   KL   + +  I +
Sbjct: 176 IEVHRSNLMKKLGVNSVVDLIMR 198


>gi|87123578|ref|ZP_01079429.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86169298|gb|EAQ70554.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 250

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAARNLTERETSCLQLAGDGY 189
            +   + F       +         +++    E      +   + T RE S LQL  +G 
Sbjct: 145 LLAEAARFADADVGQMARQINEIRSMLSGAAAEAVAAAEAPQLSFTPREASVLQLVAEGL 204

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            ++EIA +L  S+  V  Y+    +K    +R + +  A++   +
Sbjct: 205 MNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRFALQHRLV 249


>gi|115526593|ref|YP_783504.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115520540|gb|ABJ08524.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 309

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 26/50 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
            LT RE+  L     G T+ +IA+ LGLS  TV+ +L     KL   NR 
Sbjct: 246 GLTTRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRT 295


>gi|313675285|ref|YP_004053281.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312941983|gb|ADR21173.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 215

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            +++RE   L+L  D  +++EIA+KL +S+ TV A+  +   K  +      +  AI
Sbjct: 151 AISKREKEVLRLIIDELSNQEIADKLFISIRTVEAHKRNLMEKTGSKTLAGLVKYAI 207


>gi|160895826|ref|YP_001561408.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160361410|gb|ABX33023.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 245

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 13/136 (9%)

Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
                 +   +  G          ++ ++     +         ++   L L ++R+ A 
Sbjct: 105 FGDEQHVLAAIEAGAMGYLLKDLAADAVLEEVRSLHAGGSPINPMVARKLLLRQQRAGAV 164

Query: 172 RNL-------------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
             L             + RE   L+L   G+T +E+A +LG+S HTV  ++     KL  
Sbjct: 165 AGLQPPAEPQAAAQALSARELEVLRLVARGHTLDEVARQLGVSRHTVRTFVRRIYGKLQV 224

Query: 219 VNRIQAIAKAIRFGYI 234
            +R Q +  A++ G++
Sbjct: 225 SSRTQMMHVALQRGWL 240


>gi|94495970|ref|ZP_01302549.1| two component transcriptional regulator, LuxR family protein
           [Sphingomonas sp. SKA58]
 gi|94424662|gb|EAT09684.1| two component transcriptional regulator, LuxR family protein
           [Sphingomonas sp. SKA58]
          Length = 209

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
           G   + +     L          LT+RE   L    DG  ++ IA  LG+S  TV  +  
Sbjct: 128 GLSARAMEAQARLN--------VLTDRERDVLNGLVDGLPNKTIAYDLGISPRTVEIHRA 179

Query: 211 SATVKLDAVNRIQAIAKAIRFG 232
           +   KL+  +  +A+  A   G
Sbjct: 180 NLMQKLEVRSLAEALRIAFHAG 201


>gi|167763839|ref|ZP_02435966.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC
           43183]
 gi|298480014|ref|ZP_06998213.1| transcriptional regulator [Bacteroides sp. D22]
 gi|167697955|gb|EDS14534.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC
           43183]
 gi|298273823|gb|EFI15385.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 183

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L++R+   +++  DG    EIAEKL +S++TVN +  ++  K+   +  + +  A+   
Sbjct: 121 KLSDRQIEVMRMLYDGKNDSEIAEKLFISLNTVNNHRKNSFRKVGVHSMAEFMRYAMTNN 180

Query: 233 Y 233
            
Sbjct: 181 L 181


>gi|134103488|ref|YP_001109149.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005968|ref|ZP_06563941.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916111|emb|CAM06224.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 2/126 (1%)

Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
                  +G              V   ++     +     A      +    L       
Sbjct: 90  RALHGGASGFLLKTGDPRELVLGVRAAADGGAYLSP--PVARRVIRDLGGPRLSREVAAR 147

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    L+ERE   L L G G ++ EIA ++ +   TV AY+ +    L   NR+QA   A
Sbjct: 148 NRIEGLSERERQVLALVGAGLSNAEIARRVHVVEGTVKAYVSAILNHLGFRNRVQAAILA 207

Query: 229 IRFGYI 234
              G +
Sbjct: 208 YEAGLV 213


>gi|254247770|ref|ZP_04941091.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124872546|gb|EAY64262.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 212

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTER 177
            P+ +   K G + F  E      E+         +  ++   + ++R++      LT R
Sbjct: 97  VPMAVSTMKKGAMDFI-EKTFDEAELRKLVERMLDKARSESKSVQEQRAASERLSKLTAR 155

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           E   L+    G  +++IA+ LG+S+ TV A+  +   KL+       +  A+
Sbjct: 156 EQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|331005230|ref|ZP_08328623.1| Transcriptional regulator, LuxR family [gamma proteobacterium
           IMCC1989]
 gi|330420973|gb|EGG95246.1| Transcriptional regulator, LuxR family [gamma proteobacterium
           IMCC1989]
          Length = 219

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            K  ++    LT ++   L    +G+ +++I  ++G++  TV A++ +   KL   NR Q
Sbjct: 141 EKSLAARISTLTPQQYRVLCYVREGWLNKQIGFEIGITEATVKAHITAIFRKLGVTNRTQ 200

Query: 224 AIA 226
           A+ 
Sbjct: 201 AVI 203


>gi|269216157|ref|ZP_06160011.1| transcriptional regulator, LuxR family [Slackia exigua ATCC 700122]
 gi|269130416|gb|EEZ61494.1| transcriptional regulator, LuxR family [Slackia exigua ATCC 700122]
          Length = 545

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ RET   +    G +   IAE+L +S +TV  +      KLD  +R +  A 
Sbjct: 487 GLSTRETEVCEAIARGLSMATIAERLFISENTVRTHSRHIYAKLDIHSRQELGAM 541


>gi|266631096|emb|CBH32096.1| putative two-component response regulator [Streptomyces albaduncus]
          Length = 201

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 41/105 (39%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G   F  +       V      A  + + D         +    LT+RE   L+L   G 
Sbjct: 97  GVAGFLHKDSPPEKLVSAIRDLAAGRRVIDADLAMSAWQTPLPPLTDRELEVLRLTATGE 156

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
               IA +L LS  TV  YL +   KL+A  R+ A+  A   G++
Sbjct: 157 AVPAIATRLHLSPGTVRNYLTTVESKLNARTRVDAVRIATDAGWL 201


>gi|194292793|ref|YP_002008700.1| two component response regulator transcriptional regulator protein
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226697|emb|CAQ72648.1| putative TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION REGULATOR
           PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 226

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   L L   GYT  E A  LGLSVHTV +++ +   KL   +R +A+ +A + G 
Sbjct: 163 LSVRENEILDLISRGYTYAETARYLGLSVHTVQSHIKNIYGKLAVRSRGEAVFEAAKLGL 222

Query: 234 I 234
           +
Sbjct: 223 L 223


>gi|13488505|ref|NP_109512.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14028259|dbj|BAB54851.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 230

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 151 GACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
               ++++D          +   R LTER+T  L+L  +G +++E+A +L L   TV  +
Sbjct: 130 MLSARLLSDLQSPQSANGVADRLRQLTERQTEILRLVAEGLSNKEVALRLELQEKTVKHH 189

Query: 209 LGSATVKLDAVNRIQAIAK 227
           +     KL+  NR +A   
Sbjct: 190 MTGVLSKLNVRNRTEAALM 208


>gi|326802187|ref|YP_004320006.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326552951|gb|ADZ81336.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 216

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT +E   L     G + + +  +L ++  TV +++     KL   +  +A+AKA+   
Sbjct: 155 GLTNKEREVLSCIVRGMSYKMVGHELNITYDTVRSHVKKIYEKLHVASLTEAVAKAVSQR 214

Query: 233 YI 234
            +
Sbjct: 215 IV 216


>gi|302554479|ref|ZP_07306821.1| response regulator [Streptomyces viridochromogenes DSM 40736]
 gi|302472097|gb|EFL35190.1| response regulator [Streptomyces viridochromogenes DSM 40736]
          Length = 222

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +        L  +++         +         +  + A  +T RE   L+L  +G
Sbjct: 120 QAVLAAARGDGDLPADLLGRLINQVGTLHRGT---AGRPGAPASGMTPRELDVLRLVAEG 176

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             + EIA KL  S  TV   +   T +L   NR  A+A A+R GYI
Sbjct: 177 LDTGEIASKLSYSERTVKNVMHGLTTRLHLRNRAHAVAHALREGYI 222


>gi|262200493|ref|YP_003271701.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083840|gb|ACY19808.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 271

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
                 + +        +      +LT  E   L     GYT+++IA  L +SV+TV  +
Sbjct: 189 LDALAAKAMRAIRA---QALPEQFHLTPSERRVLDFLPSGYTADQIAGMLSVSVNTVKTH 245

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
             S   KL    R  A+  A R G +
Sbjct: 246 SRSIYRKLQVSTRRDAVMVARRAGLL 271


>gi|255015802|ref|ZP_05287928.1| transcriptional regulator [Bacteroides sp. 2_1_7]
          Length = 203

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+ RE   +     G T+ EIA++L LS HTV  +  +   KL   +       AI  
Sbjct: 134 QSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVN 193

Query: 232 GYI 234
             +
Sbjct: 194 KLV 196


>gi|227833967|ref|YP_002835674.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183544|ref|ZP_06042965.1| transcriptional regulator, LuxR family protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454983|gb|ACP33736.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 279

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   ++  E    C Q+++        R   +  L+ RE   L     G+T+ E AE+
Sbjct: 188 NRVNDEDLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 241

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 242 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276


>gi|227541066|ref|ZP_03971115.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183326|gb|EEI64298.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 280

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   EV  E    C Q+I         R      L+ RE   L     G+T+ E A++
Sbjct: 189 NRITDEEVRNELEVLCDQMIAPV------RIKPTTKLSARELDVLSCVALGHTNVEAAKE 242

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 243 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 277


>gi|167590736|ref|ZP_02383124.1| putative transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 169

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+ RE   +QL   G+ +++IA++L +S  TV +YL +   KL   +R   + +
Sbjct: 103 LSSREMQVVQLVCMGFLTKQIADRLHISEFTVRSYLKTIYAKLGVRSRAALVFR 156


>gi|89899702|ref|YP_522173.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89344439|gb|ABD68642.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 217

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 41/84 (48%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
                V++D+++  +  +     LT R+   LQL  +G +++EIA +L L+V TV ++  
Sbjct: 130 AVSKGVVSDYVQRLRGEAQPGAQLTPRQREVLQLIAEGQSTKEIARRLDLAVKTVESHRS 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               +LD       +  A+  G +
Sbjct: 190 QLMKQLDIHEVAGLVRYAMHVGVV 213


>gi|302557514|ref|ZP_07309856.1| LuxR family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475132|gb|EFL38225.1| LuxR family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 144

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 125 GFHKNGY--VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
           G     +  V      L      I +       +    L   +   S    LT RE   L
Sbjct: 32  GASGAAWEQVREAHAALRALAPRIADPALRAELLQACALLTAETAPSVTVRLTPREVDVL 91

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                G T+   AE+LG++  TV AYL SA  KL    R QA+  A R G++
Sbjct: 92  ACVAAGATNGVAAERLGVTAETVKAYLRSAMRKLGVRTRGQAVVAARRAGWL 143


>gi|301310989|ref|ZP_07216918.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3]
 gi|300831052|gb|EFK61693.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3]
          Length = 203

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           ++L+ RE   +     G T+ EIA++L LS HTV  +  +   KL   +       AI  
Sbjct: 134 QSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVN 193

Query: 232 GYI 234
             +
Sbjct: 194 KLV 196


>gi|299538173|ref|ZP_07051458.1| competence protein A [Lysinibacillus fusiformis ZC1]
 gi|298726375|gb|EFI66965.1| competence protein A [Lysinibacillus fusiformis ZC1]
          Length = 211

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT++E S L+    GY+++EIA++L LS+  +   L     KL   +R +A+ + IR   
Sbjct: 146 LTQKEISILRSLIKGYSNQEIADELFLSIRAIEYNLTKIYKKLGVNSRTEAVTEVIRLDI 205

Query: 234 I 234
           +
Sbjct: 206 L 206


>gi|302554181|ref|ZP_07306523.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471799|gb|EFL34892.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 216

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +             S    LT RE   L   G+G ++  IAE+L ++  TV  ++ 
Sbjct: 134 RLIAEFAAKPAREPTADLSVLDRLTRREREVLSCLGEGLSNAGIAERLDMAEATVKTHVS 193

Query: 211 SATVKLDAVNRIQAIAKAIRFGY 233
               KL+  +R+QA   A   G 
Sbjct: 194 RLLGKLELRSRVQAAVLAQELGI 216


>gi|295838815|ref|ZP_06825748.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295827204|gb|EDY42294.2| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 260

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 155 QVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207
           +V+    E    +   +R        L+ RE   L L G G T+ +IAE+L L+  TV  
Sbjct: 167 RVMARIREPRPGKPEPSRAVPGELARLSPRELEILDLIGLGLTNRQIAERLYLAEKTVKN 226

Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231
            + S   KL    RIQA   A R 
Sbjct: 227 RVSSILGKLGVGRRIQAAMLAERL 250


>gi|239816808|ref|YP_002945718.1| LuxR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803385|gb|ACS20452.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 161

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 38/110 (34%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
           R  F +  +         L + V +             L       +    LT RE   +
Sbjct: 49  RSEFRRAAWQADRYRRAGLEHAVAVAFLYRLACRAAVPLHDVPLSDAPLAGLTPREGDVM 108

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
                G T  EIA  L +S  TV+ +L    VKL    R  A+ +A+  G
Sbjct: 109 HWLSRGKTDAEIAALLEISPRTVHKHLEHVYVKLGVETRTAAVVRALAMG 158


>gi|209521106|ref|ZP_03269835.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209498452|gb|EDZ98578.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 220

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 47/154 (30%), Gaps = 13/154 (8%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVR------LGFHKNGYVIFTSEFLMLAN--E 144
                  S  +   R+         + F V             G + + ++        E
Sbjct: 58  DVSLPGASGIEAMRRMLAREPDARVLIFSVHEESIFVRRALDAGALGYVTKASAPDVLVE 117

Query: 145 VIIEAHGACYQVITD-----FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
            +         +  D      L          R L+ RE   L+L   GYT   IAEKLG
Sbjct: 118 AVRSIARRAGYLSPDVSQALALRTAFNEGPPGRQLSAREFEVLRLLVQGYTLPSIAEKLG 177

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LS  TV  +      K  A N +Q    A R G 
Sbjct: 178 LSQKTVANHQSVIRQKFGADNGVQLAQMANRLGL 211


>gi|206603220|gb|EDZ39700.1| Probable transcriptional regulator, LuxR family [Leptospirillum sp.
           Group II '5-way CG']
          Length = 358

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172
            PF   AFP+ L F  +      +       E I          +               
Sbjct: 238 GPFRVRAFPLNLHFSLSLPEGIQNFRRRQDKERIRVL------FLEPLTPAPLLPGKTGG 291

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L+ ++    +    G +++ IAE LG++  TV  +L +   KL   NR + I  
Sbjct: 292 LLSPKQLEVTRRVLQGCSNKRIAETLGITEQTVKDHLHAIFEKLRLKNRWELIVF 346


>gi|297580603|ref|ZP_06942529.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535019|gb|EFH73854.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 267

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 52/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 27  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   ++  V     +
Sbjct: 84  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERSIVVYLGCFK 143

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRL 203

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIAE L +S  TV  +      +L   +  + 
Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 253


>gi|104782132|ref|YP_608630.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95111119|emb|CAK15839.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 204

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 10/135 (7%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-- 160
                L   L   A +   +         V+       +   +  E  GA    + +   
Sbjct: 66  ARLAELRQQLPRTALVVLSMVDDPEVINAVMTAGADGFIGKSLTPEEIGAALLAVREGEV 125

Query: 161 --------LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
                   L   +   S    LT R+   L+L   G T++EIA +L +S  TV  ++ S 
Sbjct: 126 VVRYAPSGLLHQEGADSELEQLTHRQHDVLRLIAQGKTNKEIARELDISPFTVRIHVSSL 185

Query: 213 TVKLDAVNRIQAIAK 227
              L+   R  A  K
Sbjct: 186 LKTLNVPTRTAAAVK 200


>gi|227540406|ref|ZP_03970455.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239730|gb|EEI89745.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 117

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
             ++RE   ++L  +G ++ EIAEKL ++  TV  +  +  +K    N  Q I  ++  G
Sbjct: 56  KFSKREVDIIKLIAEGLSNNEIAEKLFIASVTVKKHRQNILLKAGCKNTAQLIKNSVLQG 115

Query: 233 YI 234
            I
Sbjct: 116 LI 117


>gi|226363982|ref|YP_002781764.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242471|dbj|BAH52819.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 372

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             A  LT RE   L L   G T+  I+ +L +S  TV +++     KL    R +  A 
Sbjct: 304 PRAHALTAREREVLTLMATGATNATISRRLCISDGTVKSHVQRIFKKLGVSTRAEVAAL 362


>gi|195541891|gb|ACF98092.1| putative response regulator FixJ [uncultured bacterium 1042]
          Length = 206

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRS--SAARNLTE 176
            P+ +   K G + F        +EV+I+A   A  +++    E     S  S    L+E
Sbjct: 89  VPMAVDAMKAGALDFI--EKPFDDEVLIDAIKRAAGRLVERRGEADDAASIQSRLGQLSE 146

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           RE   L     G  ++ IA  L +S  TV  +  S   K+ A N  + +  A+  G+
Sbjct: 147 RELQVLSGVVAGLPNKTIAYDLDISPRTVEVHRASVMTKMQARNLPELVRMALATGF 203


>gi|27382418|ref|NP_773947.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355589|dbj|BAC52572.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 225

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 12/155 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151
           +       +  +++ R+    L    + F V                  L       +  
Sbjct: 69  VDFSMPRMTGVEVARRIRDYPLQTEVLIFTVHKSGLLAQQAFEAGARAFLTKSDANRSLL 128

Query: 152 ACYQVITDFLELFK------------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
           A    +                      +   R LT RE   ++L  +GY+++ I+  L 
Sbjct: 129 AAVDALLVHKRFCSESCRNELDHGAGGEADRGRGLTPREQLVVKLVAEGYSNKGISAILN 188

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           LSV T  A+  +A  KLD  +    +  A+R   +
Sbjct: 189 LSVKTTEAHRAAAMRKLDVNSTAGLVRYAVRAQLV 223


>gi|302865626|ref|YP_003834263.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302568485|gb|ADL44687.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 223

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           + AH      +       ++       L+ERE     L G G T+ EI+ +L +SV TV 
Sbjct: 136 LIAHVTGTAPVASPDPKRERAVRLLDGLSEREREVAVLLGRGRTNAEISAELFMSVATVK 195

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AY+     KLD  NR+Q        G +
Sbjct: 196 AYVSRLLTKLDLNNRVQVALLVQDAGLV 223


>gi|262164964|ref|ZP_06032702.1| transcriptional regulatory protein UhpA [Vibrio mimicus VM223]
 gi|262027344|gb|EEY46011.1| transcriptional regulatory protein UhpA [Vibrio mimicus VM223]
          Length = 66

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE     L   G   ++IA+ L LS  TV+ +  +   KL+  N +  I  A++   
Sbjct: 3   LTKREVEVFDLLVQGQDVKDIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFALQHHL 62

Query: 234 I 234
           +
Sbjct: 63  L 63


>gi|326797136|ref|YP_004314956.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Marinomonas mediterranea MMB-1]
 gi|326547900|gb|ADZ93120.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Marinomonas mediterranea MMB-1]
          Length = 894

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ERE   LQ      +  +IA KL +S++T+  +  +  +KL+  +R  A+ KA   
Sbjct: 832 EPLSEREQEVLQWLNTELSGPQIAAKLYVSLNTLRTHTKNIYMKLNVNSRRSAVVKANEL 891

Query: 232 GY 233
           G 
Sbjct: 892 GL 893


>gi|320158823|ref|YP_004191201.1| transcriptional regulatory protein UhpA [Vibrio vulnificus
           MO6-24/O]
 gi|319934135|gb|ADV88998.1| transcriptional regulatory protein UhpA [Vibrio vulnificus
           MO6-24/O]
          Length = 203

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           I   L     ++++   LT RE    QL   G   + IA +LGLS  TV+ +  +A  KL
Sbjct: 127 IAMKLATPNDKATSLTQLTRRENEVCQLLARGLDVKSIAAELGLSHKTVHVHRANAIDKL 186

Query: 217 DAVNRIQAIAK 227
              N ++    
Sbjct: 187 GVKNNVELAKL 197


>gi|171849138|pdb|3CLO|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
           Containing A Luxr Dna Binding Domain (Np_811094.1) From
           Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A
           Resolution
 gi|171849139|pdb|3CLO|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
           Containing A Luxr Dna Binding Domain (Np_811094.1) From
           Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A
           Resolution
 gi|171849140|pdb|3CLO|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
           Containing A Luxr Dna Binding Domain (Np_811094.1) From
           Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A
           Resolution
          Length = 258

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L+    G +S+EIA  L +SV+TVN +  +   KL   N I+A   A     
Sbjct: 198 LSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELXKL 257

Query: 234 I 234
           +
Sbjct: 258 L 258


>gi|113867311|ref|YP_725800.1| ATP-dependent transcription regulator LuxR [Ralstonia eutropha H16]
 gi|113526087|emb|CAJ92432.1| ATP-dependent transcriptional regulator,MalT-family [Ralstonia
           eutropha H16]
          Length = 947

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +    L++RE   ++L G G  +++IA  LGLS  TV  +L +   KL   +R +A+A+ 
Sbjct: 874 ARLEELSDREADVVRLLGQGLPNKKIARTLGLSPETVKWHLRNIFRKLGVSSRDEAVARV 933

Query: 229 IRFGY 233
                
Sbjct: 934 RDREL 938


>gi|269793732|ref|YP_003313187.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095917|gb|ACZ20353.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 204

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 88  IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH---KNGYVIFTSEFLMLANE 144
               +  +       +++ RL   L     I            +   V         A+ 
Sbjct: 52  DVAVLDLQMPGLDGIEVAERLATQLPGCRCIIVTSHGRPGYLKRALAVGVRGFLPKTASA 111

Query: 145 VIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           +++            +++     +  +S    LT RE   L LA DG   +EIA+++ LS
Sbjct: 112 LVVADVVRSVHAGGRYVDPELAAEAIASGDSPLTAREADVLALAADGSPVDEIAQRVSLS 171

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             TV  YL +A +KL   NR +A A A R G+I
Sbjct: 172 AGTVRNYLSTAVMKLGVSNRHEAAATARRHGWI 204


>gi|253996438|ref|YP_003048502.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983117|gb|ACT47975.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 213

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              +++   L      +     L+ RE    +L  +G   ++IA  L +S  TV  Y   
Sbjct: 132 IAQKIVMQSLA---GAADPTERLSAREFEVFRLLAEGSGVDDIALMLNVSQKTVANYQTI 188

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   N ++ +  AIR+G I
Sbjct: 189 LKQKLGITNAVELVRLAIRYGVI 211


>gi|330830188|ref|YP_004393140.1| GacA-like protein [Aeromonas veronii B565]
 gi|328805324|gb|AEB50523.1| GacA-like protein [Aeromonas veronii B565]
          Length = 214

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              ++ F    +      ++L+ERE   + +   G    +I+E+L LS  TVN+Y     
Sbjct: 132 QMALSQFASADEN---PFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLF 188

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL     ++    AIR+G +
Sbjct: 189 SKLGINGDVELTHLAIRYGML 209


>gi|308186331|ref|YP_003930462.1| 2-component transcriptional regulator [Pantoea vagans C9-1]
 gi|308056841|gb|ADO09013.1| putative 2-component transcriptional regulator [Pantoea vagans
           C9-1]
          Length = 219

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +K  S    L+ERE   + +   G    EI+E+L LS  TVN+Y      KL+    ++ 
Sbjct: 141 QKAESPFSCLSERELQIMLMITRGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVEL 200

Query: 225 IAKAIRFGY 233
              AIR G 
Sbjct: 201 THLAIRHGL 209


>gi|238025567|ref|YP_002909799.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237880232|gb|ACR32564.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           glumae BGR1]
          Length = 226

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177
           +   VR G          +  ++     ++       + +   +      +     LT R
Sbjct: 110 VTQAVRAGASGYLLKDSPASEIIRGIVAVLAGQTFFSEGLAARMIQASAGAGPLERLTPR 169

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E   L    +G +S++IA   GLSV TV  +  +   KL    + + I  A+  
Sbjct: 170 ERDILDALAEGLSSKQIALHNGLSVRTVETHRLNLKRKLGIEGQAELIKFAVEH 223


>gi|167033376|ref|YP_001668607.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166859864|gb|ABY98271.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 209

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 106 VRLEGGLLPFAGIA----FPVRLGFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVI 157
           +R  G +LP   ++     P+ +   K G   F     ++ L+L +      H A  +  
Sbjct: 68  MRERGLMLPVIFVSGHADVPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALEHAARARQG 127

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              L L + R      LT RE         G ++ EIAE+LG+SV TV+ Y G    +L 
Sbjct: 128 DQALALVQVR---IDGLTPRERDVFVPLVQGLSNREIAEQLGISVKTVDLYRGRVMKRLQ 184

Query: 218 AVNRIQAIAKAIRFG 232
           A +  + +  AI  G
Sbjct: 185 AASLAELVGMAIACG 199


>gi|78484154|dbj|BAE47185.1| response-regulator protein [Streptomyces sp. AJ9463]
          Length = 216

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L   GDG ++ EIA +L ++  TV  ++     KL+  +R+QA   A   
Sbjct: 155 DVLTRREREVLGCLGDGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQEL 214

Query: 232 GY 233
           G 
Sbjct: 215 GI 216


>gi|296268892|ref|YP_003651524.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091679|gb|ADG87631.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 197

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKK 166
           +   L   A +              +       +  +   E      + V      L  +
Sbjct: 65  VAERLTGRAILILTSFGRPGYLRRALAAGVRGFIPKDAPAEQLAEAIRKVHAGGRYLDPE 124

Query: 167 RSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            ++ A       LT+RE   L+LA +G T  EIA  + LS  TV  YL +A  KL A NR
Sbjct: 125 LAALAMTAGDCPLTQRERDALKLAAEGATVAEIAAAIHLSEGTVRNYLSNAITKLGAGNR 184

Query: 222 IQAIAKAIRFGYI 234
           I AI  A   G+I
Sbjct: 185 ITAIRVAREMGWI 197


>gi|294147003|ref|YP_003559669.1| putative response regulator [Sphingobium japonicum UT26S]
 gi|292677420|dbj|BAI98937.1| putative response regulator [Sphingobium japonicum UT26S]
          Length = 258

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + +    +LT ++ + L     G  +++IA  LG+S+ T+ A++ +   KL  ++R Q
Sbjct: 186 EDEIARRIDSLTPQQKTVLAHLVRGRLNKQIAHDLGVSMTTIKAHVSAILQKLGVLSRTQ 245

Query: 224 AIAKA 228
           A+ KA
Sbjct: 246 AVIKA 250


>gi|284044064|ref|YP_003394404.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948285|gb|ADB51029.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 981

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 151 GACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                 + +   L ++ ++ A      +L+ERE     L   G T+ EIA  L +S  TV
Sbjct: 874 LLRPHAVRELRGLGRRVAAPAVGTGVPSLSEREREIAALVAAGGTNREIAAALVVSPRTV 933

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFG 232
             ++ +   KL   +R + +A AI  G
Sbjct: 934 ETHVRNLVRKLGVADRTE-VAAAIGAG 959


>gi|226306044|ref|YP_002766004.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226185161|dbj|BAH33265.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 285

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 2/108 (1%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
                 + +    +   ++  +  G   ++           S  A  LT RE   L    
Sbjct: 179 RGVHAELRSVAQTVTDTDLQTKLRGLSQRLANLLRPTADAESDVA--LTPREVDVLSQVA 236

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            G T+ E  ++L L   TV +YL SA  KLDA +R +A+  A R G +
Sbjct: 237 LGCTNIEAGQRLSLRPETVKSYLRSAMGKLDASSRHEAVVTARRLGLL 284


>gi|163852797|ref|YP_001640840.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163664402|gb|ABY31769.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 300

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 10/112 (8%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179
             +     +   + F            I    +          L ++       +T RE 
Sbjct: 194 LTLTDAQGRIHTLSFIGRTGPE-----ILLRLSGDPAAAGLERLRERL-----PITGREA 243

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L     G +S +I E LGLS  TV  +L     KL   NR  A A A R 
Sbjct: 244 EVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295


>gi|318057614|ref|ZP_07976337.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079841|ref|ZP_07987173.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 215

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 49/192 (25%), Gaps = 31/192 (16%)

Query: 67  ILIETYGDDFLFHFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
            L+    +  +      LL       +  E         +            +  PV  G
Sbjct: 10  RLVVADDNPVVRAGLRALLEGRADAVVVAEAADGRQALAATERHRPDGVLLDLRMPVVDG 69

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------------------VITDFLELFKK 166
                 +   +  L++      E H    +                    +         
Sbjct: 70  LTVLPRLARLAPVLVITYGRDAELHARARRLGAAGCLVHGDFTVPQLVGAVRHLRAGAPA 129

Query: 167 RSSAAR-----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
               ++            L+ RE   + L   G  + +IA    ++  TV  ++     K
Sbjct: 130 LPPPSQKQSPVRPSWGGPLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAK 189

Query: 216 LDAVNRIQAIAK 227
           L    R +AIA+
Sbjct: 190 LQTTTRSEAIAR 201


>gi|311898395|dbj|BAJ30803.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 34/119 (28%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173
             AG A  +         V            +                        A   
Sbjct: 93  LRAGAAGFLLKDLEAEALVDGVRTVARGDGMLAPSVTRRLISSFARPGAPDPVGPGALDG 152

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           LT +E   L   G G ++ EIA +L  +  T   ++     KL   +R+QA   A   G
Sbjct: 153 LTPKEREVLGCLGAGLSNAEIALRLRTAEATTKTHVSRILAKLGLRSRVQAAILAQELG 211


>gi|311103769|ref|YP_003976622.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758458|gb|ADP13907.1| bacterial regulatory protein, LuxR family protein 3 [Achromobacter
           xylosoxidans A8]
          Length = 142

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%)

Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
                    +   +LT RE   +     G  ++ IA  LG+S+ TV A+      KL   
Sbjct: 1   MQAPRPDLEAVLSSLTPRERQIVTYVAAGRPNKVIAIDLGISLRTVEAHRSRIFTKLQVR 60

Query: 220 NRIQAIAKAIRFG 232
           N +Q   +    G
Sbjct: 61  NAMQLACRLCEHG 73


>gi|158318246|ref|YP_001510754.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113651|gb|ABW15848.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 215

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +LT RE   + L G G +++EIA +L +S  T   ++    VKL A +R Q    A + G
Sbjct: 153 SLTVREREVMGLVGLGLSNDEIAARLVISPATARTHVSRVMVKLSARDRAQLAVLANQAG 212

Query: 233 Y 233
            
Sbjct: 213 L 213


>gi|114563168|ref|YP_750681.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114334461|gb|ABI71843.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 197

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LTERE   L L  +G T++++A++L LS+ T+  +      KL   N  +    
Sbjct: 139 LTEREIQVLHLLIEGKTNKQMADELYLSLRTIEVHRSKIIKKLAVHNAAELAKF 192


>gi|124268769|ref|YP_001022773.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124261544|gb|ABM96538.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 306

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
           A  LT RET  L     G T+ +I + LG+S  TVN +L     KL    R
Sbjct: 242 AAALTPRETEVLSWLAKGKTNRDIGDILGVSPRTVNKHLEHIFEKLGVETR 292


>gi|329296608|ref|ZP_08253944.1| response regulator [Plautia stali symbiont]
          Length = 219

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 126 FHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERET 179
               GY+     S+ ++ A   +          IT  + L +     A +    L+ERE 
Sbjct: 96  AGAAGYLSKGAASQEVVSAIRSVHAGQRYIASDITQQMALSQIEPQRAESPFSCLSEREL 155

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             + +   G    EI+E+L LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 156 QIMLMITRGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 209


>gi|329926657|ref|ZP_08281068.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939066|gb|EGG35431.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 216

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERE 178
           G        FTS  ++ +    I         +   L    + +   +      NLT RE
Sbjct: 99  GASGYLLKDFTSHKIIASIREAIRGELMLPSKVAAKLAARLRTTGVPQIPVQNYNLTPRE 158

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
               +L  +   + EIA+ L ++  TV  Y+     K+   +R +AI
Sbjct: 159 LQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205


>gi|325002840|ref|ZP_08123952.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 212

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
                       LT RE   L   G G ++ E++ +L +S  T   ++     KL   +R
Sbjct: 140 APRPGSVPGLGALTARERDVLAGLGRGLSNAELSAELVISEGTTKTHVSRVLAKLGLRSR 199

Query: 222 IQAIAKAIRFGYI 234
            QA   A   G +
Sbjct: 200 TQAAIAAQDAGLV 212


>gi|296101085|ref|YP_003611231.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055544|gb|ADF60282.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 201

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLT 175
             P+ +   K G   F ++   + +  +I+A  +  ++  +     K+  +      +LT
Sbjct: 81  TIPMSVRAIKGGAYEFLTK--PVESAALIDAIESALRLAENNAVRNKEHYALKQRHMSLT 138

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            RE   LQLA  G  +++IA +LG+S  TV  +      K+   +  + +    R 
Sbjct: 139 PREHEVLQLAISGLLNKQIAAELGVSEITVKVHRRRVMEKMQVRSVAELVRVVERL 194


>gi|291451544|ref|ZP_06590934.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354493|gb|EFE81395.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 238

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           AA  L+ RE   ++L   G ++++IA    +S  TV  ++     KL A NR  AIA
Sbjct: 168 AAHGLSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 224


>gi|315505170|ref|YP_004084057.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315411789|gb|ADU09906.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 256

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            L          L+ RE   L    +G ++ +IA +L L+  TV  +L +   KL AV+R
Sbjct: 157 SLDHVYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSR 216

Query: 222 IQAIAKAIRFGYI 234
           I A+ KA+    I
Sbjct: 217 IDAVNKAVAASII 229


>gi|323529151|ref|YP_004231303.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323386153|gb|ADX58243.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 212

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           L+++E   LQ+   G +++ I + L +S  TV+++      KL   + ++ I  A R
Sbjct: 150 LSDKELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMHKLGVKSLVELIDLARR 206


>gi|227547991|ref|ZP_03978040.1| regulatory family protein [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079936|gb|EEI17899.1| regulatory family protein [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 279

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELF----------KKR 167
           +R      G             E +   H        +V  + L               R
Sbjct: 152 LRHTDGGKGAAKAGRVMNSAEWEQVRSTHSKLRMLANRVTDEELRRDLEQLCDQMVSPVR 211

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 L+ RE   L     G+T+ E AE++G+   TV +YL S   KL A  R +A+  
Sbjct: 212 IKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNA 271

Query: 228 AIRFG 232
           A R G
Sbjct: 272 ARRIG 276


>gi|148557095|ref|YP_001264677.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148502285|gb|ABQ70539.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 855

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            + +   L+L    S  ++ LT+RE   L    DG +++ IA +L L+ +TV  +L +  
Sbjct: 778 ARHLEKILQLISASSHPSQ-LTDREAEILAHLADGVSNKLIARRLALTENTVKFHLKNIF 836

Query: 214 VKLDAVNRIQAIAKAIR 230
            KL   +R +A A A R
Sbjct: 837 AKLGVASRKEAAACAFR 853


>gi|161520287|ref|YP_001583714.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353535|ref|YP_001949162.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344337|gb|ABX17422.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337557|dbj|BAG46626.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 277

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 12/220 (5%)

Query: 22  HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81
           H    +I                     L+ +L                   D       
Sbjct: 57  HARLRQIGFSTLGYGAYEMIGRRILCAHLLRDL--APPSFMQPYIEGALYESDPRFAQVR 114

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHKNGYVIFTSE 137
               P+ W+  + E   +  G   V    G L      +G+ F +          +  + 
Sbjct: 115 QSGFPVAWRLDEIEAAAQRGGDRKVLALAGHLRAHAMNSGVIFSLSAPRLDLRVAVNLTS 174

Query: 138 FLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTS 191
                  + + VI  A      V    L   + R +  R   L + +   L+    G + 
Sbjct: 175 ETHGTDWIDDRVIGGALAVSLAVHRVALPFLEARVARMRGFALGDEQQQVLERLVHGLSD 234

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +EIA  L  S+H V  ++ S     +  NR Q    A R 
Sbjct: 235 QEIASALRTSLHKVGHHIRSLEKLFNVQNRAQLAYLAARR 274


>gi|37525945|ref|NP_929289.1| response regulator [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785374|emb|CAE14321.1| Transcription regulator [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 221

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               ++  ++ +    L++RE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQISPQQDNPLSCLSDRELQIMLMITKGQKVSDISEQLNLSPKTVNSYRYRMFSKLN 192

Query: 218 AVNRIQAIAKAIRFGY 233
               ++    AIR+G 
Sbjct: 193 INGDVELTHMAIRYGL 208


>gi|119776315|ref|YP_929055.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768815|gb|ABM01386.1| two component transcriptional regulator, LuxR family [Shewanella
           amazonensis SB2B]
          Length = 191

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 80  FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139
                +P +     +  ++     L +    G         P+ L   + G   F  + +
Sbjct: 49  ILDSRMPGLSGEALQHELVNQQSPLGIIFLTGHGD-----LPMALAAFREGACDFFQKPV 103

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199
             A   + +A            E+   R   A  L+ERE+  L+L  DG T+++I+E L 
Sbjct: 104 QAAP--LCDAIDKAEAESQRRYEVAGLRLKLA-RLSERESQVLRLLTDGLTNKQISETLY 160

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LS+ T+  +  S   KL   N  +    A R
Sbjct: 161 LSLRTIEVHRASMMKKLGVHNLAELGRFACR 191


>gi|328951348|ref|YP_004368683.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451672|gb|AEB12573.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 217

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 30/56 (53%)

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           E   LQL   G +++EIA+ LGLS  TV   L     KL A NR QA   A+R G 
Sbjct: 156 ELEILQLLAQGCSNQEIADALGLSEKTVRNRLSEVFAKLGAQNRTQAALFAVRAGI 211


>gi|327480105|gb|AEA83415.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           DSM 4166]
          Length = 222

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN-----------LTERETSCLQLAGDGYTSEE 193
             + AH    + + +      +                  LT RE   L     G T+ +
Sbjct: 122 ARVAAHLRTARALQNARRNATQAPPVDEKQIQAMLSQRFQLTGREVEVLHWVSCGKTNRD 181

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           I + LGLS  TVN +L    VKL    R 
Sbjct: 182 IGDILGLSPRTVNKHLEHVYVKLGVETRT 210


>gi|330818886|ref|YP_004351103.1| Transcriptional regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
 gi|327374428|gb|AEA65780.1| Transcriptional regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
          Length = 247

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 12/226 (5%)

Query: 16  ELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74
            L+  +  I   +    +   Y  +     P +      L   D     +         D
Sbjct: 26  ALAQTVQAIAAELG--GYDYLYIQHRRGCEPDQMNQHQYLIGCDPQWPQVYLDKKWYVND 83

Query: 75  DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH-KNGYVI 133
             L          +  +I+ ET  + +     R E      + +  PV        G + 
Sbjct: 84  PDLMWALRESQVTVASNIKAETEGQRN---MRRFEQAHGFRSKLIVPVHSPGSKMVGVLY 140

Query: 134 FTSEFLMLANEVIIEAHGA-----CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
             +       E ++  H         +++  F   ++   +   +LT++E + L      
Sbjct: 141 VGTPDAPEIGEPLLLQHRIEWRSLAAELLDWFEHAYRTAETRDIDLTQKEVTILNFLKHD 200

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           Y +  IA +L +SV TV++Y      K    +   A+  A+  G +
Sbjct: 201 YAAPAIAHELNVSVPTVHSYYKKLNQKFKVQHISLAVKIALHLGIL 246


>gi|313674425|ref|YP_004052421.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312941123|gb|ADR20313.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 196

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           T RE   ++L   G +S EIAE L +S  TV+ +  +   K    +  + I 
Sbjct: 141 TSREIEIIKLLAAGKSSSEIAEILFISPQTVSKHRSNILKKSGCKSSTELIH 192


>gi|306844463|ref|ZP_07477053.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1]
 gi|306275276|gb|EFM57026.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1]
          Length = 245

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 177 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 229


>gi|282856682|ref|ZP_06265948.1| two-component response regulator [Pyramidobacter piscolens W5455]
 gi|282585447|gb|EFB90749.1| two-component response regulator [Pyramidobacter piscolens W5455]
          Length = 203

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L  DG +  EIAE+L +++++V  +  +   K    +  +    A+  G
Sbjct: 138 ELTRREREVLTLICDGLSRREIAERLNITINSVKTHFSNILSKTGYESVAKLAIFAVSNG 197

Query: 233 YI 234
           +I
Sbjct: 198 FI 199


>gi|218516276|ref|ZP_03513116.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 91

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT +++  L +  +G  +++IA +LG+S  T+ A++ +  +KLD  +R QA+   I
Sbjct: 24  RLHTLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAV---I 80

Query: 230 RFGYI 234
           + G I
Sbjct: 81  QLGKI 85


>gi|320531208|ref|ZP_08032193.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136577|gb|EFW28540.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 223

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           ++++ +L            +TE E + L L  +GY++ EIA++L +S  TV +++     
Sbjct: 149 RLVSQYLRPVPSSRP---GVTEAEQAVLDLLCEGYSNAEIADQLFISEATVKSHVSHLMK 205

Query: 215 KLDAVNRIQAIA 226
           K    +R++ + 
Sbjct: 206 KYGVSSRLKLVV 217


>gi|256421934|ref|YP_003122587.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036842|gb|ACU60386.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 222

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
             +         R + A   T+RE   ++L    +T++EI +K+ LS  TV  +      
Sbjct: 137 AAMIVKSRFNPPRENNAVTFTDREKEIIRLICQQFTAQEIGDKIFLSKRTVEGHRTRILE 196

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           K++  N    +  A++   I
Sbjct: 197 KMNVKNTAGVVVFALKNNLI 216


>gi|297559758|ref|YP_003678732.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844206|gb|ADH66226.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 220

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 2/125 (1%)

Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169
                 +G              V   ++     +  +        +             +
Sbjct: 93  ALGGGASGFLLKAGDPRELIAGVHAVADGGAYLSPQVARQ--VIARFGGPRAAREAAAVA 150

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
               LT+RE   L L G G ++ +IA++L L   TV +Y+ +   +L+  NR+QA   A 
Sbjct: 151 RVEELTQREREVLALVGAGLSNADIADRLFLVEGTVKSYVSAILNRLEMRNRVQAAILAH 210

Query: 230 RFGYI 234
             G +
Sbjct: 211 EAGLV 215


>gi|170698172|ref|ZP_02889251.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|170136937|gb|EDT05186.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
          Length = 204

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  L+ RE + L     G++++EIA+ L +S  TV+ +      K    N +     A  
Sbjct: 140 AAALSPREITVLSYLVKGHSNQEIADLLHVSHKTVSTHKAHIFQKTGITNIVDLAEFARE 199

Query: 231 F 231
            
Sbjct: 200 N 200


>gi|3822034|gb|AAC82663.1| GacA-like protein [Vibrio cholerae O395]
          Length = 214

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS +TVN+Y      KL+
Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPNTVNSYRYRLFAKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGIL 209


>gi|17988034|ref|NP_540668.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62289171|ref|YP_220964.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|17983780|gb|AAL52932.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62195303|gb|AAX73603.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str.
           9-941]
          Length = 230

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +
Sbjct: 162 GELLTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTE 214


>gi|27382083|ref|NP_773612.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355253|dbj|BAC52237.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 261

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
             +I +   +   R S    LT RE   L     G  ++ IA KLGLS  TV  ++    
Sbjct: 167 AYLINEGARVAIDRRSVTD-LTPREQQVLAELELGLPNKLIAAKLGLSESTVKMHIQHIM 225

Query: 214 VKLDAVNRIQAIAK 227
            K  A NR +A+ +
Sbjct: 226 RKCAAHNRTEAVLR 239


>gi|311898017|dbj|BAJ30425.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 104

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   LT RE     L G G ++ EIA++L +S  TV A+L    +K  A  R +A   A 
Sbjct: 29  AYEELTAREREVFDLLGKGLSNAEIADRLVVSGSTVKAHLARILIKTGAETRTRAALMAQ 88

Query: 230 RF 231
           R 
Sbjct: 89  RL 90


>gi|297155312|gb|ADI05024.1| response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 164

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
              +  +     L  ++I +        +         R      LT RET  L+L  +G
Sbjct: 62  QAVLAASRGDGDLPTDLIGQLVSQ----VGALRPGAVGRLGVPLGLTPRETDVLRLVAEG 117

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             + EIA KL  S  TV   +   T +L   NR  A+A A+R GYI
Sbjct: 118 MGTGEIAVKLAYSERTVKNVIQGLTTRLGLRNRAHAVAYALREGYI 163


>gi|325673304|ref|ZP_08152996.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325555894|gb|EGD25564.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 878

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P       +  ++  S     + +   +   A          L +   + A  LT RE  
Sbjct: 774 PFHDMAPASLELLTASRGRFGSRDRFADEVWAS---------LPRTVVATAEKLTRRELQ 824

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L       T+EEIA  L +SV+TV  +L     KL    R  A+  A   G +
Sbjct: 825 LLAELPTWRTAEEIAADLCVSVNTVKTHLRGIYRKLGVTTRRDAVTAAHTHGLL 878


>gi|325674370|ref|ZP_08154059.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325555050|gb|EGD24723.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 780

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 17/180 (9%)

Query: 60  DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
           +  +    L     D  +    + L  + W  +  E        + +          G +
Sbjct: 598 ELLEAGLRLTRQTRDPLM--VFTCLQALAW--LDAENGQVRRAAVVMGAADAHRRLVG-S 652

Query: 120 FPVRLGF-----------HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168
            PV                +      T +        +  A    Y +     E      
Sbjct: 653 NPVFFPNLLVHQNTYEETVREALDAKTLDAAHREGASMTTADAIAYTLGEQSREPMPDTP 712

Query: 169 SAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
              R  LT+RE    +L  +G T++EIA++L +S  TV+ ++     KL   +R+Q    
Sbjct: 713 GQERTVLTKREHEVAELVAEGLTNKEIAQRLTISRRTVDGHVDHILTKLGFTSRVQVATW 772


>gi|297543959|ref|YP_003676261.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841734|gb|ADH60250.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 129

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLT 175
            IA P+ +     GY+  ++    +A+E++       Y+++ ++  E+  +       LT
Sbjct: 10  CIAMPLDIDNDIVGYLDISTIKHNMADEMMGFIDLLVYKIVNEYKREMDLESQEDLEKLT 69

Query: 176 ERETSCLQLAGDGYTSEEIA--EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           +++   ++   +GY  +EIA   +LG+   TV  +      KL   N  QAIAKAI+   
Sbjct: 70  DKQIEIIKKCANGY--KEIAISRELGIKPETVKYHKKEIVRKLRVKNFQQAIAKAIKLNL 127

Query: 234 I 234
           I
Sbjct: 128 I 128


>gi|124003337|ref|ZP_01688187.1| transcriptional regulator, LuxR family [Microscilla marina ATCC
           23134]
 gi|123991435|gb|EAY30866.1| transcriptional regulator, LuxR family [Microscilla marina ATCC
           23134]
          Length = 219

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +I    E  K + +    LT+RE   L L G G T++EI+++L ++  TV  +  +   K
Sbjct: 140 LIKSIQESKKAKPNPQVKLTKREKEVLALIGKGMTTKEISKQLFIADTTVETHRRNLIDK 199

Query: 216 LDAVNRIQAIAK 227
           L+  N  + I  
Sbjct: 200 LEVKNSKELILY 211


>gi|86358918|ref|YP_470810.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86283020|gb|ABC92083.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 305

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           + +       +       +  +E +     A  +   + L            LT+RE+  
Sbjct: 199 ISITHAGQAALQLAFLGSIGPDEYLFRLTAASQRSDDEMLRQRF-------ALTQRESEV 251

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L     G  + +I E LGLS  TVN +L    VKL   NR  A  KA
Sbjct: 252 LLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|332525112|ref|ZP_08401290.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332108399|gb|EGJ09623.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 207

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
             Q  +   E   + +  A  LT RE+  L+    G  +++IA+ LG+S+ TV A+  + 
Sbjct: 126 ARQAFSQHQEQASRDALLA-RLTTRESQVLERIVAGRLNKQIADDLGISIKTVEAHRANI 184

Query: 213 TVKLDAVNRIQAIAKAI 229
             KL+A      +  A+
Sbjct: 185 MEKLNANTVADLLKIAL 201


>gi|307947515|ref|ZP_07662848.1| two component LuxR family transcriptional regulator [Roseibium sp.
           TrichSKD4]
 gi|307769333|gb|EFO28561.1| two component LuxR family transcriptional regulator [Roseibium sp.
           TrichSKD4]
          Length = 236

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RET  L+   DG +++E A +L LSV TV  +  +   K  A      +  A R  
Sbjct: 154 GLTTRETEILRFVADGMSNKETANRLNLSVRTVETHRLNIRRKTKAYTLSDLVRVARRLR 213

Query: 233 YI 234
            +
Sbjct: 214 LV 215


>gi|282863125|ref|ZP_06272185.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282562107|gb|EFB67649.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 886

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 41/121 (33%)

Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163
             +          G     +         + T+  L     +      A  ++       
Sbjct: 750 PMLPYRARAHLLYGEWLRRQGRRQDCRPHLRTAHELFSGAGLEAFGRRAADELRATGETA 809

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             +   A   LT +E    +L   G TS+E+A +L LS  TV+ +L +   KL   +R Q
Sbjct: 810 RSRTGHARDQLTMQELHIARLVATGATSKEVAARLFLSPRTVDTHLRNIYRKLGINSRRQ 869

Query: 224 A 224
            
Sbjct: 870 L 870


>gi|153826582|ref|ZP_01979249.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|149739674|gb|EDM53888.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
          Length = 267

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 51/232 (21%), Gaps = 31/232 (13%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICE--LHNYDLDSGDIPNILIETYGDDF 76
            RL  +   I                P +  +     L                   D F
Sbjct: 27  SRLVAVLRCIA----DFDCAVILGYRPDKHPIYLYDSLSAQRELLFQRYLTHAYLD-DPF 81

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-T 135
                      ++       +         +          ++  V L   +   V    
Sbjct: 82  YSALQHNTRSGVFHLSDLMPLNPQQTAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGC 141

Query: 136 SEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------AR 172
            +      E I                      L L +    +               A+
Sbjct: 142 FKPRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQ 201

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            L+ RE     L   G  S+EIAE L +S  TV  +      +L   +  + 
Sbjct: 202 RLSPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYAQLHVSSLSEL 253


>gi|15641657|ref|NP_231289.1| response regulator VieA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590827|ref|ZP_01678153.1| response regulator VieA [Vibrio cholerae 2740-80]
 gi|121727322|ref|ZP_01680469.1| response regulator VieA [Vibrio cholerae V52]
 gi|153819787|ref|ZP_01972454.1| response regulator VieA [Vibrio cholerae NCTC 8457]
 gi|153823165|ref|ZP_01975832.1| response regulator VieA [Vibrio cholerae B33]
 gi|227081804|ref|YP_002810355.1| response regulator VieA [Vibrio cholerae M66-2]
 gi|298498266|ref|ZP_07008073.1| response regulator VieA [Vibrio cholerae MAK 757]
 gi|3123891|gb|AAC38449.1| response regulator [Vibrio cholerae]
 gi|9656166|gb|AAF94803.1| response regulator VieA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547317|gb|EAX57435.1| response regulator VieA [Vibrio cholerae 2740-80]
 gi|121630328|gb|EAX62725.1| response regulator VieA [Vibrio cholerae V52]
 gi|126509666|gb|EAZ72260.1| response regulator VieA [Vibrio cholerae NCTC 8457]
 gi|126519326|gb|EAZ76549.1| response regulator VieA [Vibrio cholerae B33]
 gi|227009692|gb|ACP05904.1| response regulator VieA [Vibrio cholerae M66-2]
 gi|297542599|gb|EFH78649.1| response regulator VieA [Vibrio cholerae MAK 757]
          Length = 584

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           + G    +  G             V+  +  +  ++ ++++A  +  +      EL +  
Sbjct: 469 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 526

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 L+ERE +  ++  +G T++EIA +L ++  TV+ Y      KL   + ++ +  
Sbjct: 527 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 580


>gi|300789965|ref|YP_003770256.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299799479|gb|ADJ49854.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 935

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAA---------RNLTERETSCLQLAGDGYTSEEIAEK 197
           + AH    ++   F     +R              +LT  ET    L  +G ++ +IA +
Sbjct: 838 LGAHWDVARLRARFRAFGIRRGPTVKHRQATHGWDSLTPTETKIAGLVLEGLSNPQIATR 897

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L LS  TV  ++     KL   +RI    +A R 
Sbjct: 898 LFLSPRTVATHVSHILAKLGVHSRIDIAREATRN 931


>gi|302545604|ref|ZP_07297946.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463222|gb|EFL26315.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 231

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A             +  ++++  R LT RE   L L  +G ++ +I  ++ L V TV  +
Sbjct: 136 ASRTLLHSHPGTEAVVDEKAARVRLLTARERDVLVLVAEGLSNADIGARIHLGVGTVKDH 195

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +   KL   +R+QA   A R G +
Sbjct: 196 VSAMLTKLRVTSRVQAALLAQRAGLL 221


>gi|226362567|ref|YP_002780345.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226241052|dbj|BAH51400.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 773

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186
              G+     + L    +       A    + +           + +LT RE    +L  
Sbjct: 671 GDRGFESEFRQGLGTRFDE------AAAYALEETGPSDGPAEPGSTSLTRREQQVAELVA 724

Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +G T++ IA +L +S  T   ++     KL   +R Q  A +I  
Sbjct: 725 EGLTNKAIAARLVISQRTAQGHVEHILSKLGFNSRAQIAAWSIEQ 769


>gi|37913119|gb|AAR05381.1| probable two-component response regulator [Aeromonas hydrophila]
          Length = 207

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +          R+     L++RE S L L   G+T++ IAE + LS  TV+ Y      K
Sbjct: 129 IAGARHAHEVDRADLLSTLSDREMSVLLLICQGHTNKHIAENMLLSEKTVSTYKTRLMQK 188

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L+  N +  I+ A R   +
Sbjct: 189 LNVTNMVDLISLARRQELL 207


>gi|73539297|ref|YP_299664.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
 gi|72122634|gb|AAZ64820.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
          Length = 911

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + +E   L L   G +++ IA  L +S +TV  +L     K    NR  A+++A++ G +
Sbjct: 850 SAKEMQVLALLASGQSNKAIARGLDVSENTVKFHLKQIFQKFGVDNRAGAVSQAMQQGLL 909


>gi|256379381|ref|YP_003103041.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923684|gb|ACU39195.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 213

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
            +    L  +++ +      ++  + L       +    ++ RET  L+L  DGY + EI
Sbjct: 117 AAGEGALPPDLLGKLLNRVSRLQRNVLHPNGWTMA---GMSNRETEVLRLIADGYETREI 173

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           AE+L  S  TV + L   T +    NR  A+A A+R G I
Sbjct: 174 AERLCYSQRTVKSILHDITNRFGLRNRAHAVAYALREGLI 213


>gi|218675092|ref|ZP_03524761.1| LuxR family transcriptional regulator [Rhizobium etli GR56]
          Length = 81

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
            D      +R+ A   +T RE   +     G T+ EI   L +S  TVN ++ +A  KL 
Sbjct: 4   DDAARADHRRAGAMSAVTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLG 63

Query: 218 AVNRIQAIAKAIRFGYI 234
                  +A A+R G I
Sbjct: 64  VFKETALVAAALRNGII 80


>gi|145594124|ref|YP_001158421.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303461|gb|ABP54043.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 212

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               +V+       ++     ++LT++E   L+   +G T+ EIA K+ L+  TV  Y+ 
Sbjct: 128 AITTRVLERIRSGVEQ-PRELKSLTDQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVS 186

Query: 211 SATVKLDAVNRIQAIAKAIRF 231
           S   KL    R QA   A R 
Sbjct: 187 SMLAKLGLERRTQAAVLATRL 207


>gi|297159387|gb|ADI09099.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 224

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 2/127 (1%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
                    G              V   +      +  +  A     ++  + L      
Sbjct: 96  ARALGGGATGFLLKAGDPHELIAGVRAVAGGAAFLSPKV--ARHVITELGGERLTRGAAA 153

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +    LT RE   L L G G ++ EIA +L L   TV  Y+ +   +L+  NR+QA   
Sbjct: 154 RARTDVLTAREREVLALVGAGLSNAEIARRLHLVEGTVKGYVSAVLDRLEVGNRVQAAIV 213

Query: 228 AIRFGYI 234
           A   G +
Sbjct: 214 AYEAGLV 220


>gi|255744920|ref|ZP_05418870.1| response regulator VieA [Vibrio cholera CIRS 101]
 gi|255737391|gb|EET92786.1| response regulator VieA [Vibrio cholera CIRS 101]
          Length = 581

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           + G    +  G             V+  +  +  ++ ++++A  +  +      EL +  
Sbjct: 466 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 523

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 L+ERE +  ++  +G T++EIA +L ++  TV+ Y      KL   + ++ +  
Sbjct: 524 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 577


>gi|239816035|ref|YP_002944945.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802612|gb|ACS19679.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 215

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD--- 159
           +   RL         +A            V+       LA     +A  A  + +     
Sbjct: 69  EALRRLLAHDPKARVLALSAHEDTIHPRRVLRAGALGYLAKRSAPDALIAAVKAVARGDR 128

Query: 160 ----------FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209
                          +  ++ A  L+ERE S       G T  +IA  L LS+ TV ++L
Sbjct: 129 YIDANTAQALATAQIEGEANPADLLSEREFSVFIQLARGMTVAQIASTLNLSLSTVGSHL 188

Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234
                KL A N+ +    A+R+G I
Sbjct: 189 YRVKQKLGATNQAELTWVALRWGLI 213


>gi|192361195|ref|YP_001981681.1| response regulator receiver domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190687360|gb|ACE85038.1| Response regulator receiver domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 209

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203
           E I  A     ++      L  +++  A  LT +E   LQ    G +S+EIA  LGLSV 
Sbjct: 118 EKIQAALTLSRELHQQRQALATRQARLA-LLTPKEQEILQGILQGLSSKEIAAGLGLSVR 176

Query: 204 TVNAYLGSATVKLDAVNRIQAIA 226
           TV  +      KL   + I+ + 
Sbjct: 177 TVENHRARLMDKLHVKSAIELMR 199


>gi|91788536|ref|YP_549488.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91697761|gb|ABE44590.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 208

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 4/136 (2%)

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153
           ++ ++E    L +    G          ++ G        F  E L+   E ++E     
Sbjct: 70  QDRLVERKSPLPIVFITGHGDVPMAVNTMKKGAMDFIQKPFQEEALVNLVERMLEQAKEA 129

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
           +            R +    LT RE   L+    G  +++IA+ LG+S+ TV A+  +  
Sbjct: 130 FAGHQQ----SASRDALLAKLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIM 185

Query: 214 VKLDAVNRIQAIAKAI 229
            KL+A      +  A+
Sbjct: 186 EKLNANTVADLLKIAL 201


>gi|78100993|pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
           Pseudomonas Fluorescens
 gi|78101079|pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
 gi|59580654|gb|AAC06272.2| response regulatory protein [Pseudomonas fluorescens]
          Length = 208

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176
            P+ +   K G + F  +      + +++A     Q+  +  +  + +    +   +LT 
Sbjct: 88  IPMTVRAMKAGAIEFLPK--PFEEQALLDAIEQGLQLNAERRQARETQDQLEQLFSSLTG 145

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           RE   LQL   G  +++IA +LG++  TV  +  +   KL+  +    +  
Sbjct: 146 REQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHL 196


>gi|298248569|ref|ZP_06972374.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297551228|gb|EFH85094.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1048

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%)

Query: 163  LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
            +   R      L+ +E   L+L   G T+++IA+ L +SV+TV  ++     KL    R+
Sbjct: 977  VSAPRHLLVEPLSAQEQRVLRLLVSGRTNQQIAQALVVSVNTVKHHVKRLYSKLGVSTRL 1036

Query: 223  QAIAKAIRFGYI 234
            +A   A     +
Sbjct: 1037 EASEAARHLKLL 1048


>gi|239979679|ref|ZP_04702203.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 281

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           AA  L+ RE   ++L   G ++++IA    +S  TV  ++     KL A NR  AIA
Sbjct: 211 AAHGLSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 267


>gi|226361838|ref|YP_002779616.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240323|dbj|BAH50671.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 759

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           K S     LT RE     L  DG T+ EIA KL +S  TV+A++     KL   +R Q +
Sbjct: 690 KESGTRAGLTRREQQIAALVADGLTNREIATKLVISQRTVDAHVEHILTKLGFRSRTQIV 749

Query: 226 AK 227
             
Sbjct: 750 RW 751


>gi|35186966|gb|AAQ84141.1| PlmR3 [Streptomyces sp. HK803]
          Length = 213

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 36/84 (42%)

Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
               QV     E+   R   A  ++ RE   L+L  +G    EIA KL  S  TV   L 
Sbjct: 130 ALMEQVRWTHREVLAPRGLTASGVSPRELDVLRLVSEGKELAEIAAKLCYSERTVKYILH 189

Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234
               +L   NR  A++ AIR G I
Sbjct: 190 GLMKRLQLRNRSHAVSYAIRAGLI 213


>gi|327190926|gb|EGE57980.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 305

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           + +       +       +  +E +     A  +   + L           +LT+RE+  
Sbjct: 199 ISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRF-------SLTQRESEV 251

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L     G  + +I E LGLS  TVN +L    VKL   NR  A  KA
Sbjct: 252 LLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|325290812|ref|YP_004266993.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966213|gb|ADY56992.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 226

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T RE    +L   G  ++EIA  LG+   TV+ ++ +   KL    R++A+ K
Sbjct: 168 TSREVEVARLMNKGLQNKEIAAALGIKKRTVDLHIRNIQKKLKVTTRLEAVVK 220


>gi|302522529|ref|ZP_07274871.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302431424|gb|EFL03240.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 219

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R L+ RE   L+L  +G +++ I   +GLS  TV ++L     KL   +R   +A A+R 
Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215

Query: 232 GYI 234
           G I
Sbjct: 216 GII 218


>gi|258510658|ref|YP_003184092.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477384|gb|ACV57703.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 200

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 147 IEAHGAC----YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202
           + AH        +V    L +    +     L+ RE   L+LA  G T+ ++A++L LS 
Sbjct: 111 LAAHLRSIMTGQRVFDPALMMAAMET--DNPLSAREIDVLRLAKRGLTTRQMAKELFLSE 168

Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            TV  YL  A  KL    R +AI KA   G++
Sbjct: 169 GTVRNYLSGALAKLGCATRQEAIRKADDMGWL 200


>gi|118722505|gb|ABL09961.1| regulator [Streptomyces echinatus]
          Length = 202

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            +VI   L L     S A  LT RET  L+ A +G +  ++A+   LS  TV  +L S  
Sbjct: 122 QRVIAPGLMLAA-WESRANPLTPRETEILRWASEGGSVRDVADAARLSPGTVRNHLSSIV 180

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL A +R+ A+  A   G++
Sbjct: 181 TKLGARSRLDAVRIAQDAGWL 201


>gi|26989384|ref|NP_744809.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida KT2440]
 gi|24984245|gb|AAN68273.1|AE016461_9 DNA-binding response regulator AgmR [Pseudomonas putida KT2440]
          Length = 221

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + LT ++   L+    G ++++IA  L ++  TV A++ +   KL+  NR+QAI  A
Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|27380392|ref|NP_771921.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27353556|dbj|BAC50546.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 220

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV----ITDFLELFKKRSS 169
             AG A    +     GYV  TS    L   V+    G             L      SS
Sbjct: 89  QNAGFAVQA-IRAGARGYVTKTSPPETLVRAVMDVLAGRIAISPDIDHELALSRISGESS 147

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           AA  LT RE   L+L     ++EEIAE L +S  TV         KL   + I+ +  A+
Sbjct: 148 AADVLTPREFEVLRLLLAEESTEEIAETLHVSPKTVANLHSLIKDKLGVDSDIELVRLAL 207

Query: 230 RFGYI 234
           R G +
Sbjct: 208 RQGLL 212


>gi|94309035|ref|YP_582245.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93352887|gb|ABF06976.1| response regulator, NarL-family [Cupriavidus metallidurans CH34]
          Length = 210

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
              R L+ERE         G +   IA++L LSV TV+ Y      K+           A
Sbjct: 144 PVHRTLSEREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYA 203

Query: 229 IRFGYI 234
           I+ G +
Sbjct: 204 IKNGLV 209


>gi|288917724|ref|ZP_06412087.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350939|gb|EFC85153.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 250

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L+L   G ++ + A +LG+S  TV  ++ +   KL   NR++    A+R 
Sbjct: 185 PRLTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLAKLQLRNRVELTRFALRE 244

Query: 232 GY 233
           GY
Sbjct: 245 GY 246


>gi|262169664|ref|ZP_06037355.1| response regulator VieA [Vibrio cholerae RC27]
 gi|262021898|gb|EEY40608.1| response regulator VieA [Vibrio cholerae RC27]
          Length = 555

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           + G    +  G             V+  +  +  ++ ++++A  +  +      EL +  
Sbjct: 440 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 497

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 L+ERE +  ++  +G T++EIA +L ++  TV+ Y      KL   + ++ +  
Sbjct: 498 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 551


>gi|238797855|ref|ZP_04641347.1| two-component response regulator [Yersinia mollaretii ATCC 43969]
 gi|238718271|gb|EEQ10095.1| two-component response regulator [Yersinia mollaretii ATCC 43969]
          Length = 180

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAE 196
            +  +V+IE      +     L   +++         L+ RE   + L   G TS++IA 
Sbjct: 80  PIDADVLIETVSLALEQHEQALATHRQQIGYQQLLSQLSAREREVVALIIQGETSKQIAH 139

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            L LS  TV A+  +   KL+  +    I  
Sbjct: 140 ILSLSPRTVEAHRANIFAKLEVSSLALLIHY 170


>gi|15641226|ref|NP_230858.1| response regulator [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121729873|ref|ZP_01682301.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|153803512|ref|ZP_01958098.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153824227|ref|ZP_01976894.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153831196|ref|ZP_01983863.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|229505194|ref|ZP_04394704.1| BarA-associated response regulator UvrY [Vibrio cholerae BX 330286]
 gi|229511136|ref|ZP_04400615.1| BarA-associated response regulator UvrY [Vibrio cholerae B33]
 gi|229515595|ref|ZP_04405054.1| BarA-associated response regulator UvrY [Vibrio cholerae TMA 21]
 gi|229518255|ref|ZP_04407699.1| BarA-associated response regulator UvrY [Vibrio cholerae RC9]
 gi|229521333|ref|ZP_04410752.1| BarA-associated response regulator UvrY [Vibrio cholerae TM
           11079-80]
 gi|229529699|ref|ZP_04419089.1| BarA-associated response regulator UvrY [Vibrio cholerae 12129(1)]
 gi|229608213|ref|YP_002878861.1| response regulator [Vibrio cholerae MJ-1236]
 gi|254292120|ref|ZP_04962893.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|9655693|gb|AAF94372.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121628382|gb|EAX60882.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124120948|gb|EAY39691.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|126518250|gb|EAZ75475.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|148873319|gb|EDL71454.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|150421955|gb|EDN13929.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|227013130|gb|ACP09340.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229333473|gb|EEN98959.1| BarA-associated response regulator UvrY [Vibrio cholerae 12129(1)]
 gi|229341431|gb|EEO06434.1| BarA-associated response regulator UvrY [Vibrio cholerae TM
           11079-80]
 gi|229344970|gb|EEO09944.1| BarA-associated response regulator UvrY [Vibrio cholerae RC9]
 gi|229347364|gb|EEO12324.1| BarA-associated response regulator UvrY [Vibrio cholerae TMA 21]
 gi|229351101|gb|EEO16042.1| BarA-associated response regulator UvrY [Vibrio cholerae B33]
 gi|229357417|gb|EEO22334.1| BarA-associated response regulator UvrY [Vibrio cholerae BX 330286]
 gi|229370868|gb|ACQ61291.1| BarA-associated response regulator UvrY [Vibrio cholerae MJ-1236]
          Length = 214

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGIL 209


>gi|150388882|ref|YP_001318931.1| regulatory protein, LuxR [Alkaliphilus metalliredigens QYMF]
 gi|149948744|gb|ABR47272.1| regulatory protein, LuxR [Alkaliphilus metalliredigens QYMF]
          Length = 258

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE----LFKKRSSAAR 172
             A P+ +     GY+  ++    +  E+I       Y++I ++ +    + K     + 
Sbjct: 134 CFAIPLNVDDEIIGYLDVSTINQKITEEMITITELLPYKIIEEYKKQIKNIEKAFKRESS 193

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            LT ++   LQL    YT +EI ++L +S++TV  +  S   KL+  +  +AI KA+
Sbjct: 194 KLTTKQLQILQLMIKSYTEDEIGKELHVSINTVKYHKKSIFSKLNVRSSREAIIKAL 250


>gi|326443616|ref|ZP_08218350.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC
            27064]
          Length = 1016

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%)

Query: 121  PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
                   + G    T E  + A    +    +                     LT RE  
Sbjct: 897  SAADTARRVGDRPLTEEIALTARGARLALPASASGPDGPHGPAAAPEPGPGLGLTPREED 956

Query: 181  CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             L+L   G ++ +IA+ L +S  T + ++ +   KL    R +A A A R   
Sbjct: 957  VLRLVSAGRSNRQIAQTLSISPKTASVHVSNILAKLGVSGRGEAAALAHRLRL 1009


>gi|312137920|ref|YP_004005256.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311887259|emb|CBH46568.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 878

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           P       +  ++  S     + +   +   A          L +   + A  LT RE  
Sbjct: 774 PFHDMAPASLELLTASRGRFGSRDRFADEVWAS---------LPRTVVATAEKLTRRELQ 824

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            L       T+EEIA  L +SV+TV  +L     KL    R  A+  A   G +
Sbjct: 825 LLAELPTWRTAEEIAADLCVSVNTVKTHLRGIYRKLGVTTRRDAVTAAHTHGLL 878


>gi|284051655|ref|ZP_06381865.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
 gi|291566964|dbj|BAI89236.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 52

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                +++EIA+ L +S  TV  ++ +   KLD  +R QA+  A++ G +
Sbjct: 1   MAKSQSNQEIADALYISPGTVRVHVHAILQKLDVRDRTQAVILAMQNGML 50


>gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 305

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT+RE+  L     G ++ +I E LGLS  TV  +L    VKL   NR  A  KA +
Sbjct: 244 LTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQ 300


>gi|226326344|ref|ZP_03801862.1| hypothetical protein PROPEN_00192 [Proteus penneri ATCC 35198]
 gi|225205295|gb|EEG87649.1| hypothetical protein PROPEN_00192 [Proteus penneri ATCC 35198]
          Length = 60

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           T+RE   L     G  +++IAE L +S  TV  ++ +   KL   +R+ A
Sbjct: 2   TKRELDVLHEVSAGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAA 51


>gi|209964176|ref|YP_002297091.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
 gi|209957642|gb|ACI98278.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
          Length = 216

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   L     G ++++IA +L ++  TV  +  +   KL   NR QA   A+  
Sbjct: 151 DLLTVREREILSCLLGGGSNKDIASRLNVAESTVKMHFKALLRKLRVQNRTQAAMWALSN 210

Query: 232 GY 233
           G 
Sbjct: 211 GI 212


>gi|90409772|ref|ZP_01217789.1| hypothetical tetrathionate reductase complex: response regulator
           [Photobacterium profundum 3TCK]
 gi|90329125|gb|EAS45382.1| hypothetical tetrathionate reductase complex: response regulator
           [Photobacterium profundum 3TCK]
          Length = 196

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             LT RE   L+L   GY +++I+++L ++V TV  +  S   KL A    + +  
Sbjct: 135 ETLTTREQDILRLLVKGYKNQQISDELCIAVRTVEVHRSSLMKKLHAKTIAELVMF 190


>gi|333024259|ref|ZP_08452323.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332744111|gb|EGJ74552.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 1006

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 7/126 (5%)

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
             G     A +  PVR    + GY     E   LA    +          ++        
Sbjct: 881 AAGERERAAHVLAPVRETAGRFGYAPLAREAAELARRGRLL-------PASEPPARPALA 933

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +    LT RE+  L+L   G+++  IAE L +S  T + ++     KL    R +A A 
Sbjct: 934 PAQTLGLTARESEVLRLVAAGHSNRRIAETLYISPKTASVHVSRIIAKLGVTGRGEAAAV 993

Query: 228 AIRFGY 233
           A R   
Sbjct: 994 AHRLRL 999


>gi|328544835|ref|YP_004304944.1| Two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326414577|gb|ADZ71640.1| Two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 201

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 27/76 (35%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           A  +  +          + A  LT RE   L     G +++E    LG+S  TV  +   
Sbjct: 122 AATRARSQTQSDLPGDFAGAEQLTRREREVLSEITSGASNKEAGRSLGISPRTVEVHRAR 181

Query: 212 ATVKLDAVNRIQAIAK 227
              KL A N    +  
Sbjct: 182 IMEKLGARNAADLVRI 197


>gi|315502173|ref|YP_004081060.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315408792|gb|ADU06909.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 223

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            ++       L+ERE     L G G T+ EI+ +L +SV TV AY+     KLD  NR+Q
Sbjct: 153 RERAVRLLDGLSEREREVAVLLGRGRTNAEISAELFMSVATVKAYVSRLLTKLDLNNRVQ 212

Query: 224 AIAKAIRFGYI 234
                   G +
Sbjct: 213 VALLVQDAGLV 223


>gi|284045278|ref|YP_003395618.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949499|gb|ADB52243.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 519

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                     +  +    LT RE   L L   G ++ E+A +L ++  T   ++     K
Sbjct: 440 AAAGHRRATARSRARPAGLTARELEVLVLVARGASAREVAGELVIAEKTARNHVECVYGK 499

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L   +R +A   A+R G +
Sbjct: 500 LGVSSRAEATLYAMRHGLV 518


>gi|238064140|ref|ZP_04608849.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
 gi|237885951|gb|EEP74779.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
          Length = 557

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 61/210 (29%), Gaps = 28/210 (13%)

Query: 20  RLHLIQNRIKARNF--ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77
            L     R        A+ T  S +        +     Y          + E   D   
Sbjct: 369 HLAEAAARSGQEGALRAIVTQLSPVARECGSPALAVALRYAGALLANDAAVFELALD--- 425

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137
              +    P     +Q    +    Q        LL  A   F          +   +  
Sbjct: 426 --ADLSGWPFERARLQHAYGVWLRRQRRAAESRPLLRSAAATF---DALGAVPWADRSRA 480

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
            L  + E +                  ++   AA  LT +E    +LA +G +++EIAE+
Sbjct: 481 ELRASGESL------------------RRSVDAAGVLTPQELQVARLAAEGLSNKEIAER 522

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L LS  T+  +L     KL   +R +    
Sbjct: 523 LFLSPRTITTHLYRIYPKLGIKSRGELARL 552


>gi|209518473|ref|ZP_03267295.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501106|gb|EEA01140.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 262

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 155 QVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
            ++  F+   +  +   A   LT RE S L+L  +G T+ ++ E L LS  T+  Y  S 
Sbjct: 135 YMVDSFITGREAVAPKNAWDVLTARERSVLKLIAEGRTNRQVGEYLNLSPKTIEKYRASV 194

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   N  + +  AI  G +
Sbjct: 195 MHKLAIENLTELVLVAISMGLL 216


>gi|111017509|ref|YP_700481.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110817039|gb|ABG92323.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 430

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 68/239 (28%), Gaps = 17/239 (7%)

Query: 10  KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69
           +S+ L +   R+   +    A          A D    ++ +                  
Sbjct: 182 RSNDLDDRRSRITASETASAAL--IALRSAGAADRALSEEAVTTAFARLQGELRPLLRHR 239

Query: 70  ETYGDDFLFHFNSGLLPI----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125
           E   D      +   LP       +++    V+    Q  +          G    + + 
Sbjct: 240 EVDVDYVDPPADGRPLPGEVAHAARAMVRAIVLAFGAQPVLARLRIAWDCDGDNVLIEVR 299

Query: 126 FHKNGYV---IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------L 174
               G +     T +     + +               + L       A          L
Sbjct: 300 DQGPGTIDRNALTRQLSGRLHTLRGRIDIESIAGWGSRVTLTIPLDPPAARPDEHLLSTL 359

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             RE   L     G  +  IAE+LG+S  T+  ++ S   KLD  NR +A A  IR G 
Sbjct: 360 NPRELEVLAHLAVGKRNRAIAEELGISQSTIKFHVASVLEKLDVANRGEAGAIGIRAGI 418


>gi|289627087|ref|ZP_06460041.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646654|ref|ZP_06477997.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330869632|gb|EGH04341.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330888707|gb|EGH21368.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 209

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L    S A  +LT R+   L L   G T++EIA  LG+S  TV  ++ S    L    R 
Sbjct: 136 LSDLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRS 195

Query: 223 QAIA 226
            A A
Sbjct: 196 AAAA 199


>gi|256389326|ref|YP_003110890.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256355552|gb|ACU69049.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 233

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           +R     +          +L      +        I       +  +S    LT  E   
Sbjct: 118 IRGSALVDAVRTVARGGSLLDPTATEKLLSRLRVGIVPGEADREAAASKLATLTVSEKRI 177

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           L+L  +G T+ +I E+L L+  TV  Y+     KL    R QA A A+R 
Sbjct: 178 LELIAEGLTNRQIGERLNLAEKTVKNYITGILAKLAMQRRTQAAAFAVRH 227


>gi|238794052|ref|ZP_04637670.1| Response regulator uvrY [Yersinia intermedia ATCC 29909]
 gi|238726684|gb|EEQ18220.1| Response regulator uvrY [Yersinia intermedia ATCC 29909]
          Length = 206

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 3/112 (2%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSC 181
           G           + ++ A   +          I   + L +           L+ERE   
Sbjct: 85  GAGGYLSKGAAPQDVVTAIRAVHSGQRYIASDIAQQMALGQLEPPVETPFSCLSERELQI 144

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           + +   G    +I+E+L LS  TVN+Y      KL+    ++    AIR G 
Sbjct: 145 MLMITKGQKVNDISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 196


>gi|229589258|ref|YP_002871377.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361124|emb|CAY47987.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 208

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +RE   LQL   G T++EIA+ + LS  TV+ Y      KL A + ++ I  A R   +
Sbjct: 150 DRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLQAKSLVELIEMAKRNALV 208


>gi|254501061|ref|ZP_05113212.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222437132|gb|EEE43811.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 181

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
            + +  F ++ + R     +++ RE     +  +G TS+EIA  L +S  TV  +     
Sbjct: 104 AKAVWSFADISEDR--PLADMSVRERQVATMLAEGLTSKEIARALDISHRTVEVHRARLM 161

Query: 214 VKLDAVNRIQAIA 226
            K +A N ++ IA
Sbjct: 162 KKFNARNSLELIA 174


>gi|329940179|ref|ZP_08289461.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301005|gb|EGG44901.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 219

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 161 LELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                +R   A +       L+ RE   L+L  +G +++ I   +GLS  TV ++L    
Sbjct: 138 AARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIA 197

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
            KL   +R   +A A+R G I
Sbjct: 198 RKLGTGDRAGMVAVALRTGII 218


>gi|300787440|ref|YP_003767731.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796954|gb|ADJ47329.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G  +  +   + + E +++A       +   L     +      L+E+E   L L G+  
Sbjct: 114 GLQLVDAIRRVGSGETLLDARAVA--ALVSELRAKTGKPGPLAGLSEQELVLLDLLGESL 171

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T+ +IAE++ L+  TV  Y+     KL    R QA   
Sbjct: 172 TNRQIAERMFLAEKTVKNYVSRLLAKLGLERRSQAAVL 209


>gi|269104524|ref|ZP_06157220.1| transcriptional activator of maltose regulon MalT [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161164|gb|EEZ39661.1| transcriptional activator of maltose regulon MalT [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 902

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF- 231
            LT+RE   L L   GY++E+IA +L ++  T+  ++ +   KL   NR +AI  A    
Sbjct: 838 PLTQREWQVLGLIYSGYSNEQIASELDVAATTIKTHIRNLYQKLGIANRQEAITTAEELI 897

Query: 232 GY 233
           G 
Sbjct: 898 GL 899


>gi|237785039|ref|YP_002905744.1| LuxR family transcriptional regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757951|gb|ACR17201.1| transcriptional regulator, LuxR family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 279

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             + ++++  E    C Q++         R      L+ RE   L     G+T+ E AE+
Sbjct: 188 NRVESDDLRQELEQLCDQMVQPV------RVKQTTKLSARELDVLACVALGHTNVEAAEE 241

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 242 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276


>gi|325271782|ref|ZP_08138255.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324103086|gb|EGC00460.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 221

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + LT ++   L+    G ++++IA  L ++  TV A++ +   KL+  NR+QAI  A
Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|300854927|ref|YP_003779911.1| putative membrane-associated response regulator [Clostridium
           ljungdahlii DSM 13528]
 gi|300435042|gb|ADK14809.1| predicted membrane-associated response regulator with a HTH motif
           [Clostridium ljungdahlii DSM 13528]
          Length = 301

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 32/50 (64%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           TE++   ++L  +G T ++IAEKL +S  TV+ ++ +   KL+  +++Q 
Sbjct: 243 TEKQGEIIELIMEGVTYKQIAEKLFISPKTVDNHIQNIYKKLNVNSKMQL 292


>gi|290476079|ref|YP_003468977.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           [Xenorhabdus bovienii SS-2004]
 gi|289175410|emb|CBJ82213.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           [Xenorhabdus bovienii SS-2004]
          Length = 209

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 11/123 (8%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGA----CYQVITDF---LELF 164
             I   V          +            + + +++A          +  D    L   
Sbjct: 74  HCIMLSVHDSVTMVENALKAGARGYLSKRCSPDELLQAVRTTANNGCYLTPDIALKLASS 133

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           K   ++  +LT+RE    ++   G   + +A +LGLS  TV+ +  +   KL   N +  
Sbjct: 134 KNSQTSLDHLTKRERQVGEMLARGMDVKVVAAELGLSHKTVHVHRANVMSKLGVTNNVGL 193

Query: 225 IAK 227
           +  
Sbjct: 194 VNY 196


>gi|229490955|ref|ZP_04384788.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
 gi|229322071|gb|EEN87859.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
          Length = 212

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            LT+RE+  L L  +G +++EIAE L L V TV  ++ +   K    NR++    
Sbjct: 152 PLTDRESQVLALVAEGKSNQEIAETLHLGVTTVKTHVANLMSKTGCDNRVRLAVY 206


>gi|167576825|ref|ZP_02369699.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 210

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 12/123 (9%)

Query: 116 AGIAFPVR--LGFHKNGYVIFTSEFLMLAN-------EVIIEAHGACYQVITDFLELFKK 166
            G   P+    G       +   +   +         + ++E      ++ T      ++
Sbjct: 74  RGATLPIIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRAMKLATQRHAADRR 133

Query: 167 RSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           R         LT RE   L+   DG  S++IA  L +SV TV+ +  S   KL A +   
Sbjct: 134 RRELRRRIDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAA 193

Query: 224 AIA 226
            + 
Sbjct: 194 LVR 196


>gi|98986217|dbj|BAE94501.1| response regulator involved in catabolite control [Acidovorax sp.
           KKS102]
          Length = 208

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 148 EAHGACYQVITDFLE------LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           E  G   +++    E          R +    LT RE   L+    G  +++IA+ LG+S
Sbjct: 114 ELVGLVERMLDHARESFAGYQQAASRDALLSKLTSREAQVLERIVAGRLNKQIADDLGIS 173

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           + TV A+  +   KL+A      +  A+
Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIAL 201


>gi|229508237|ref|ZP_04397742.1| response regulator VieA [Vibrio cholerae BX 330286]
 gi|229511524|ref|ZP_04401003.1| response regulator VieA [Vibrio cholerae B33]
 gi|229518663|ref|ZP_04408106.1| response regulator VieA [Vibrio cholerae RC9]
 gi|229607811|ref|YP_002878459.1| response regulator VieA [Vibrio cholerae MJ-1236]
 gi|254848771|ref|ZP_05238121.1| response regulator VieA [Vibrio cholerae MO10]
 gi|262161795|ref|ZP_06030813.1| response regulator VieA [Vibrio cholerae INDRE 91/1]
 gi|229343352|gb|EEO08327.1| response regulator VieA [Vibrio cholerae RC9]
 gi|229351489|gb|EEO16430.1| response regulator VieA [Vibrio cholerae B33]
 gi|229355742|gb|EEO20663.1| response regulator VieA [Vibrio cholerae BX 330286]
 gi|229370466|gb|ACQ60889.1| response regulator VieA [Vibrio cholerae MJ-1236]
 gi|254844476|gb|EET22890.1| response regulator VieA [Vibrio cholerae MO10]
 gi|262028527|gb|EEY47182.1| response regulator VieA [Vibrio cholerae INDRE 91/1]
          Length = 581

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           + G    +  G             V+  +  +  ++ ++++A  +  +      EL +  
Sbjct: 466 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 523

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 L+ERE +  ++  +G T++EIA +L ++  TV+ Y      KL   + ++ +  
Sbjct: 524 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 577


>gi|148547394|ref|YP_001267496.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148511452|gb|ABQ78312.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 221

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + LT ++   L+    G ++++IA  L ++  TV A++ +   KL+  NR+QAI  A
Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|311109180|ref|YP_003982033.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763869|gb|ADP19318.1| bacterial regulatory protein, LuxR family protein 12 [Achromobacter
           xylosoxidans A8]
          Length = 209

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             L+ +E    Q+   G +++EI + L +S  TV+ +      KL   + ++ +  A + 
Sbjct: 146 DLLSNKEMVVTQMLAQGLSNKEIGDALFISNKTVSTHKTRIMNKLQIGSLVELVDFARKS 205

Query: 232 GY 233
             
Sbjct: 206 KI 207


>gi|302340328|ref|YP_003805534.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637513|gb|ADK82940.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 217

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              K R    R L+ RE     L   GY+++EIAE L ++  TV  ++ S   K    NR
Sbjct: 149 SFTKTRQELLRQLSRREREVYGLMLQGYSNDEIAEMLFIATQTVKNHIRSIYSKSGFHNR 208

Query: 222 IQAIAK 227
              I  
Sbjct: 209 SDIIHL 214


>gi|291301148|ref|YP_003512426.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570368|gb|ADD43333.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           +         ++    LT RE   L L G GY + +IAE+L L V TV  ++ S   K  
Sbjct: 136 SAVRARASVPTATLPKLTTREREVLALVGAGYANVDIAERLHLGVTTVKTHIASLMTKTG 195

Query: 218 AVNRIQAIAKAIRFG 232
             NR++    A+R G
Sbjct: 196 CSNRVRLAVLAVRSG 210


>gi|120436972|ref|YP_862658.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117579122|emb|CAL67591.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 205

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT R+   L+L G G T++EIA++L +   TV  +  +   KL      + +  A+ 
Sbjct: 144 LTGRQREILKLIGQGRTNQEIADQLFIGKTTVETHRKNMIRKLGLQGAGELLRYALE 200


>gi|120402926|ref|YP_952755.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1]
 gi|119955744|gb|ABM12749.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 862

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTERETSCLQLA 185
            +    L     + A     +V  D            R          LT R+   L+L 
Sbjct: 753 AAVRRALDALDRLGADAVANKVRADLRATGATAVPGPRRASTLSNPAGLTVRQVEVLRLL 812

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           GDG T+ E+AE+L LSV TV+ ++ +   KLD   R  A+ +A   G +
Sbjct: 813 GDGLTNAELAERLFLSVKTVDHHVSAILTKLDVTKRRDAVRRAREVGIL 861


>gi|92118486|ref|YP_578215.1| two component LuxR family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91801380|gb|ABE63755.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 263

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  +  + A  L+ RE + L+    G +++ IA K+ ++  TV  ++ +   K+ A NR 
Sbjct: 157 LVAREDATAPQLSPRELAILRCLISGNSNKCIARKIDIAEATVKVHVKAILRKIRAQNRT 216

Query: 223 QAIAKAIRFGYI 234
           QA    +    +
Sbjct: 217 QAAIWGMNHPLL 228


>gi|78063892|ref|YP_373800.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77971777|gb|ABB13156.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 922

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V+  ++         +      ++           R   A NL+ RE   L     G ++
Sbjct: 812 VLKRADRFPAVGAWYLRELARAFEADRASNAAPAARPGTAGNLSAREVEILDYVARGLSN 871

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +EIA  L ++  T+  +L +   KL+  +RIQA+ 
Sbjct: 872 KEIARALRVAPETIKWHLKNIFEKLNVTSRIQAVR 906


>gi|300782196|ref|YP_003762487.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299791710|gb|ADJ42085.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 969

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
              +    + R      L+ RE    ++  +G T+ EIA+ L LS  TV  ++     KL
Sbjct: 888 HGAWAPSQRGRRGYGSELSPREREVARMLAEGRTNREIADGLFLSPRTVEQHVAKVLRKL 947

Query: 217 DAVNRIQAIAK 227
            A +R     K
Sbjct: 948 GARSRTDVARK 958


>gi|288919194|ref|ZP_06413532.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349441|gb|EFC83680.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 215

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 151 GACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205
                V    +E F +R SA        LT RE   + L G G +++EIA  L +S  T 
Sbjct: 126 LLSPTVTRRVIEAFARRPSAPAAVDLSGLTGREREVMGLVGMGLSNDEIAAHLVISPATA 185

Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             ++    +KL A +R Q    A + G 
Sbjct: 186 RTHVSRVMIKLAARDRAQLAVLANQAGL 213


>gi|262200121|ref|YP_003271329.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083468|gb|ACY19436.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 267

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185
                   +    L +A+           ++  +F       S     LT RE   L LA
Sbjct: 159 DGDRLAQAYARLRLFVAHSDDAGLAAELDRLTAEFTS-EATSSVDLPALTGREHDVLALA 217

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             G+++  IA++LG++VHT   YL SA  KL A  R++A+  A R G 
Sbjct: 218 ALGHSNARIADQLGITVHTTKGYLKSAMRKLGATTRLEAVITARRAGL 265


>gi|290956584|ref|YP_003487766.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260646110|emb|CBG69203.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 198

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 1/110 (0%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQL 184
                  + T     +       A                       R L+ RE   L+L
Sbjct: 88  AGGVKGYVVTGTRTNIGLPTRPGAAPLGSAARMHRRPPGAPSHPGGYRELSGREVEVLRL 147

Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             +G +++ I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 148 VAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 197


>gi|226225845|ref|YP_002759951.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089036|dbj|BAH37481.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 231

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%)

Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220
            E      +    LT+RE   L++  +GYT+ EI E L +S  TV+ Y      KL   +
Sbjct: 154 REGHADERARFEKLTDREQVVLKMVAEGYTAPEIGEHLTISPKTVDTYKQRIGEKLGLTH 213

Query: 221 RIQAIAKAIRFGYI 234
           R   +  A++ G +
Sbjct: 214 RTDYVKFALKLGLL 227


>gi|254283973|ref|ZP_04958941.1| transcriptional regulator, LuxR family [gamma proteobacterium
           NOR51-B]
 gi|219680176|gb|EED36525.1| transcriptional regulator, LuxR family [gamma proteobacterium
           NOR51-B]
          Length = 206

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 151 GACYQVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           G   +++     +              LT RE     L G G  ++EIAE LG+S  TV 
Sbjct: 119 GLVQRMVAIAARVDPDTPQPEVEGFDALTHREYEVAALVGKGANNKEIAELLGVSERTVK 178

Query: 207 AYLGSATVKLDAVNRIQAI 225
           A+L +   KL+  +R+Q  
Sbjct: 179 AHLTAIFEKLELRDRVQLA 197


>gi|332666515|ref|YP_004449303.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335329|gb|AEE52430.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 236

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT+RE   L+LA  G++++EIAE+L  SV TV A+  +   KL A N ++   KA     
Sbjct: 176 LTKREIQILKLAISGHSNKEIAEQLDKSVRTVEAHRFNLMKKLKAKNLMELSVKAHELKL 235


>gi|331694091|ref|YP_004330330.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948780|gb|AEA22477.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 890

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 1/107 (0%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGD 187
            GYV    +       ++         +                  LT RE   L+L   
Sbjct: 778 AGYVQVFLDERRSLAALLATVATPGGVLAAQVRRPTADVPGGPVDALTARELDVLRLLDT 837

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                +IA +L +SV+TV  +  +   KL   NR  A+ +    G +
Sbjct: 838 DLDGPDIARRLFVSVNTVRTHTKNIYAKLGVNNRRAAVRRGDELGLL 884


>gi|319942872|ref|ZP_08017155.1| regulatory protein [Lautropia mirabilis ATCC 51599]
 gi|319743414|gb|EFV95818.1| regulatory protein [Lautropia mirabilis ATCC 51599]
          Length = 261

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 33/70 (47%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            + R      L+ER+ S L+L   G  ++ I  +LGL+  TV  ++ S    L   +R Q
Sbjct: 184 REYRDGRHLGLSERQRSVLRLMMLGLPNKSICRELGLAEGTVKVHVSSILRILGISSRAQ 243

Query: 224 AIAKAIRFGY 233
               A+R G 
Sbjct: 244 VAMAAMRSGI 253


>gi|296446398|ref|ZP_06888342.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296256033|gb|EFH03116.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 283

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 52/98 (53%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
           G   F S+       + + A  A   ++  F+++ K RS    NLT RE S L   G G+
Sbjct: 153 GGAGFVSKRAPPERLLDVLASVAAGDMVFPFVDIRKMRSDPLENLTLRERSLLSALGSGH 212

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T+ ++A+  G+S++T+  +L +   KL+  NR QAI+ 
Sbjct: 213 TNNQLAKDFGVSINTIKFHLRNLFEKLEVRNRAQAISL 250


>gi|302867979|ref|YP_003836616.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302570838|gb|ADL47040.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 979

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
            +   P  +  +++   + +           L     +A  +       G V  T+E   
Sbjct: 830 RNHPYPAAYSRLRQAEALLARRSRVATAGKLLHRAYAMAQSL-------GAVPLTAEIRT 882

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEK 197
           +A+   +    A                 A   L   T RE   L    +G T+ EI ++
Sbjct: 883 IASRARVTLDAAPDPAPVPRQRAAAPAGPAVDELATLTAREREVLAAVAEGLTNREIGQR 942

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           L +S  T+  ++     KL    R+QA A  +R G
Sbjct: 943 LFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNG 977


>gi|227502153|ref|ZP_03932202.1| regulatory family protein [Corynebacterium accolens ATCC 49725]
 gi|306836811|ref|ZP_07469769.1| LuxR family bacterial regulatory protein [Corynebacterium accolens
           ATCC 49726]
 gi|227077137|gb|EEI15100.1| regulatory family protein [Corynebacterium accolens ATCC 49725]
 gi|304567272|gb|EFM42879.1| LuxR family bacterial regulatory protein [Corynebacterium accolens
           ATCC 49726]
          Length = 279

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   E+  E    C Q+++        R   +  L+ RE   L     G+T+ E AE+
Sbjct: 188 NRVEDEELRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHTNVEAAEE 241

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 242 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276


>gi|182419652|ref|ZP_02950897.1| transcriptional regulatory protein DegU [Clostridium butyricum
           5521]
 gi|237665755|ref|ZP_04525743.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376542|gb|EDT74119.1| transcriptional regulatory protein DegU [Clostridium butyricum
           5521]
 gi|237658702|gb|EEP56254.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 216

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT+RE     L G G ++++I  +L L+  T+  YL     KL+  +R +    
Sbjct: 157 LTKREMDVAILVGQGKSNKDICNELFLTEGTIKNYLTKIFEKLNLASRTELALF 210


>gi|323699933|ref|ZP_08111845.1| transcriptional regulator, LuxR family [Desulfovibrio sp. ND132]
 gi|323459865|gb|EGB15730.1| transcriptional regulator, LuxR family [Desulfovibrio desulfuricans
           ND132]
          Length = 466

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIA 195
           +I   +     ++ +   L + +  +A           L+ RE     L  DG  +++I 
Sbjct: 367 LIGAVNRRLAPILVNQQFLEEDQGPSAEELRLGMIREKLSPREMDVFLLLRDGCANKDIC 426

Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + L +S++TV  +      KL   +R + 
Sbjct: 427 DSLHISINTVKTHNRRIFAKLGLRDRAEL 455


>gi|270158837|ref|ZP_06187494.1| transcriptional regulator [Legionella longbeachae D-4968]
 gi|289166371|ref|YP_003456509.1| regulatory protein, luxR family [Legionella longbeachae NSW150]
 gi|269990862|gb|EEZ97116.1| transcriptional regulator [Legionella longbeachae D-4968]
 gi|288859544|emb|CBJ13509.1| putative regulatory protein, luxR family [Legionella longbeachae
           NSW150]
          Length = 228

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 1/115 (0%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERET 179
           P+R    K   ++  S  +     ++         +    +E +     +    LT ++ 
Sbjct: 110 PLRSRDGKLIGIVGISFQIDSDISLLTALQETIPFMTPSTIENVPLPIRNLNNQLTAKQI 169

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            CL     G T ++I +KL LS  TV  +L +A  KL   NR + IA A++   I
Sbjct: 170 DCLYHLVKGLTIKQIGQKLNLSPRTVEDHLNAAKNKLHCHNRAELIAAALQIPLI 224


>gi|254786408|ref|YP_003073837.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685783|gb|ACR13047.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 217

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              Q+        K  +S    L+ERE     +  +G    EIAE   +S  TVN Y   
Sbjct: 129 IAQQLALRTFSGAKGDASPFEALSERELQTAIMIANGSRVHEIAESFCVSPKTVNTYRYR 188

Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234
              KL   + ++    A++   +
Sbjct: 189 IFDKLSINSDVELALLAVKHKLL 211


>gi|227081385|ref|YP_002809936.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227009273|gb|ACP05485.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGIL 209


>gi|157375006|ref|YP_001473606.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157317380|gb|ABV36478.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 219

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           LT ++   L +  +G  +++IA  LG+S  T+ A+  +   KL   NR QA+ 
Sbjct: 155 LTPQQYKVLGMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|83717609|ref|YP_439733.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167616299|ref|ZP_02384934.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|83651434|gb|ABC35498.1| transcriptional regulator, LuxR family [Burkholderia thailandensis
           E264]
          Length = 288

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 59/233 (25%), Gaps = 13/233 (5%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           M+ +      +SS              +      ++    A   P   +L          
Sbjct: 56  MTHDPARSDSASSYAHALRACVGSLQALARPTATVFYRIDASGEPVDFELFGMTAAMHRA 115

Query: 61  SGDIPNILIETYGDDFL-FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119
                  L     D        S    ++  + Q       +                + 
Sbjct: 116 YVSRYRPL-----DPLHPARCASQPGAVVTLASQLPDERRDASSYWTGFLRRHGVADVVE 170

Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAAR 172
             +R G                  +   I   H     V    L   +     +R +   
Sbjct: 171 VLLRDGGAPVAAFSLLRLAGGGRYSAAEIAALHAVQPVVEVALLPPLRAVRGIRRIACDV 230

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            LT RE    +L  DG +++ IA  L L   TV  +L     KL   NR + +
Sbjct: 231 RLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 283


>gi|116620528|ref|YP_822684.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223690|gb|ABJ82399.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 251

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT+RE   + L   G  ++EIA  L +S  TV  YL     K+   +R +     ++ 
Sbjct: 138 ALTQREGQLVSLLSQGLKNKEIATTLMISEGTVKVYLSRLFQKVGVKDRFELALFGLKN 196


>gi|328474716|gb|EGF45521.1| response regulator [Vibrio parahaemolyticus 10329]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  ++L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSPASENPFKDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGEVELTHLAIRHGML 209


>gi|326331785|ref|ZP_08198073.1| putative large transcriptional regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325950584|gb|EGD42636.1| putative large transcriptional regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 960

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 15/154 (9%)

Query: 73  GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132
           GD             +W  +          +    L    L   G              V
Sbjct: 800 GDPVAAAGLYAGAAAVWADLP---------RPYDELLA--LERHGRCLLATGEQDNAVRV 848

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDG 188
           +   +  +       +A      +    +E+     + R      L+ RE   +QL   G
Sbjct: 849 LSDVQQRLSTLGARWDADRVARALRQLGVEVARTWRRGRRGYGEQLSPREVEVIQLVARG 908

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
            T++++A+ L +S  TV+ ++ +A  KLD  +R 
Sbjct: 909 MTNKQVADTLFISPRTVHRHVSTAMRKLDVSSRT 942


>gi|307726643|ref|YP_003909856.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587168|gb|ADN60565.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 212

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           L+++E   LQ+   G +++ I + L +S  TV+++      KL   + ++ I  A R
Sbjct: 150 LSDKELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMHKLGVKSLVELIDLARR 206


>gi|302526808|ref|ZP_07279150.1| LuxR family transcriptional regulator [Streptomyces sp. AA4]
 gi|302435703|gb|EFL07519.1| LuxR family transcriptional regulator [Streptomyces sp. AA4]
          Length = 217

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 38/75 (50%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
           +T   +  +K+     +L+++E + L L G+G T+ +I+E++ L+  TV  Y+     KL
Sbjct: 134 MTKLRDSAEKQRGPLAHLSDQERTLLALIGEGLTNRQISERMFLAEKTVKNYVSRLLTKL 193

Query: 217 DAVNRIQAIAKAIRF 231
               R QA   A   
Sbjct: 194 GLERRTQAAVLATEL 208


>gi|224827162|ref|ZP_03700258.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224600671|gb|EEG06858.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 208

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 118 IAFPVRL--GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSA 170
           I                +   +F+    +           ++ D  E  +     + + +
Sbjct: 79  IMLTAHGDVPHAVAALKLGAIDFMEKPFDDGRLLAMVDQALLRDQQERDRFGRLSRLNQS 138

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
              LTERE   +QL   G  +++IA++L +S+ TV  +      K+   + ++  
Sbjct: 139 LALLTEREREVMQLILAGKLNKQIADELAISMKTVEVHRSRVFDKMGVKSAVELA 193


>gi|222082949|ref|YP_002542314.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727628|gb|ACM30717.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 219

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L+  G TS ++AE+LG+S  T   +  +   KL+  +  +  A A+R G
Sbjct: 156 PLTLRERQVLLLSAQGQTSRQMAERLGISPLTARKHRENLMRKLNLHSTAEVTAYAVRLG 215

Query: 233 Y 233
            
Sbjct: 216 L 216


>gi|149192492|ref|ZP_01870678.1| response regulator [Vibrio shilonii AK1]
 gi|148833673|gb|EDL50724.1| response regulator [Vibrio shilonii AK1]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  ++L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFSSASENPFKDLSERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGML 209


>gi|118581123|ref|YP_902373.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118503833|gb|ABL00316.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 208

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           S   +L+ RE   +QL  +G TS EIAE L LS  ++  Y     VKL   N    +  A
Sbjct: 140 SPLDSLSLREREVIQLVVEGRTSAEIAELLSLSPKSIETYRSRLMVKLGVGNIPALVKFA 199

Query: 229 IRFGY 233
           ++ G 
Sbjct: 200 LQHGI 204


>gi|327480893|gb|AEA84203.1| DNA-binding response regulator AgmR [Pseudomonas stutzeri DSM 4166]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 158 TDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           +      +        + LT ++   L+    G ++++IA  L ++  TV A++ +   K
Sbjct: 138 SRHSHHSEPSIPPELLQALTRKQLLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRK 197

Query: 216 LDAVNRIQAIAKA 228
           L+  NR+QAI  A
Sbjct: 198 LNVHNRVQAILSA 210


>gi|319941693|ref|ZP_08016016.1| hypothetical protein HMPREF9464_01235 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804814|gb|EFW01676.1| hypothetical protein HMPREF9464_01235 [Sutterella wadsworthensis
           3_1_45B]
          Length = 216

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
           ET++E    L V               V  G                A EV++ A     
Sbjct: 71  ETLVERGSLLPVIFLSAHGDIPMAMQAVHRGAMDFLV-------KPAAPEVLLAAVEKAV 123

Query: 155 QVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
           +     +     +   A+    LTERE    +L   G  +++IA++L +S+ TV  + G+
Sbjct: 124 KKNLADIAAEAGQVDLAQKAALLTERELEVARLVAQGLLNKQIADRLSISLPTVKLHRGN 183

Query: 212 ATVKLDAVNRIQAIAKAIRF-GYI 234
           A  KL   + + A+AKA+   G +
Sbjct: 184 AARKLGVRSAV-AMAKALEMAGLL 206


>gi|257063869|ref|YP_003143541.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791522|gb|ACV22192.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 515

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            LT RE     L   G++S  IAEKL +S  TV  +  +   KLD  +R + I  A
Sbjct: 456 GLTAREKEIAALTAQGFSSTYIAEKLVVSASTVRFHQQNVYRKLDIHSRTELIEIA 511


>gi|27377555|ref|NP_769084.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350699|dbj|BAC47709.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 249

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 51/176 (28%), Gaps = 6/176 (3%)

Query: 62  GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
                +      D       S   P    S+   T +E   +             GI   
Sbjct: 74  MARAYVEEFQRCDPISPRLRSRRGPTPIYSVINRTELER-TRYFNEFLRVHQTTDGIDLH 132

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARNLTE 176
           +  G    G   F              A          +   D              LT+
Sbjct: 133 LYDGDTSVGDFRFWRAPGRAPVGSREVALLTLLQPILLRATKDVHSTSTAAGHRLPQLTD 192

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           RE   + L  DG T   IA KLG+S  TV ++L     KL+  NR   IA+  R G
Sbjct: 193 RENQIVGLVADGLTDGIIARKLGISYWTVRSHLDHVFEKLETPNRATLIARIHREG 248


>gi|53725082|ref|YP_102613.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|67641979|ref|ZP_00440743.1| capsular synthesis regulator component B [Burkholderia mallei GB8
           horse 4]
 gi|76811092|ref|YP_333198.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121601120|ref|YP_992735.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124384327|ref|YP_001026471.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126449531|ref|YP_001080252.1| capsular synthesis regulator component B [Burkholderia mallei NCTC
           10247]
 gi|126454700|ref|YP_001065911.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1106a]
 gi|134282838|ref|ZP_01769541.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           305]
 gi|167001870|ref|ZP_02267660.1| capsular synthesis regulator component B [Burkholderia mallei
           PRL-20]
 gi|167738961|ref|ZP_02411735.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           14]
 gi|167824553|ref|ZP_02456024.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           9]
 gi|167846086|ref|ZP_02471594.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           B7210]
 gi|167894656|ref|ZP_02482058.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           7894]
 gi|167903066|ref|ZP_02490271.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           NCTC 13177]
 gi|167911297|ref|ZP_02498388.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           112]
 gi|167919317|ref|ZP_02506408.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           BCC215]
 gi|217423762|ref|ZP_03455263.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           576]
 gi|226192919|ref|ZP_03788531.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811926|ref|YP_002896377.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242317427|ref|ZP_04816443.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1106b]
 gi|254178165|ref|ZP_04884820.1| capsular synthesis regulator component B [Burkholderia mallei ATCC
           10399]
 gi|254180086|ref|ZP_04886685.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1655]
 gi|254188508|ref|ZP_04895019.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197245|ref|ZP_04903667.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           S13]
 gi|254199547|ref|ZP_04905913.1| capsular synthesis regulator component B [Burkholderia mallei FMH]
 gi|254205865|ref|ZP_04912217.1| capsular synthesis regulator component B [Burkholderia mallei JHU]
 gi|254258480|ref|ZP_04949534.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1710a]
 gi|254358733|ref|ZP_04975006.1| capsular synthesis regulator component B [Burkholderia mallei
           2002721280]
 gi|52428505|gb|AAU49098.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76580545|gb|ABA50020.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121229930|gb|ABM52448.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124292347|gb|ABN01616.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126228342|gb|ABN91882.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1106a]
 gi|126242401|gb|ABO05494.1| capsular synthesis regulator component B [Burkholderia mallei NCTC
           10247]
 gi|134245924|gb|EBA46015.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           305]
 gi|147749143|gb|EDK56217.1| capsular synthesis regulator component B [Burkholderia mallei FMH]
 gi|147753308|gb|EDK60373.1| capsular synthesis regulator component B [Burkholderia mallei JHU]
 gi|148027860|gb|EDK85881.1| capsular synthesis regulator component B [Burkholderia mallei
           2002721280]
 gi|157936187|gb|EDO91857.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160699204|gb|EDP89174.1| capsular synthesis regulator component B [Burkholderia mallei ATCC
           10399]
 gi|169653986|gb|EDS86679.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           S13]
 gi|184210626|gb|EDU07669.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1655]
 gi|217393620|gb|EEC33641.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           576]
 gi|225935009|gb|EEH30984.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           Pakistan 9]
 gi|237502945|gb|ACQ95263.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238523017|gb|EEP86458.1| capsular synthesis regulator component B [Burkholderia mallei GB8
           horse 4]
 gi|242140666|gb|EES27068.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1106b]
 gi|243062372|gb|EES44558.1| capsular synthesis regulator component B [Burkholderia mallei
           PRL-20]
 gi|254217169|gb|EET06553.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1710a]
          Length = 210

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 14/184 (7%)

Query: 65  PNILIETYGDDFLFHFNSGLLP---IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
              ++    D           P   +I      E        +   +  G      I   
Sbjct: 27  DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAADGLAMLTAIRDGYPSVRVIVLT 86

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSA 170
           +         +       +L+    ++        +                   + + A
Sbjct: 87  MLDNPVLMHTMRQAGALAVLSKRGDLDELPRALAAVYQGRPFVGTHAGAAGGGAMRGTDA 146

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            R L+ RE   ++L   G T  +IA + G S+ TV+ +  +A  KL   + +     A  
Sbjct: 147 PRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 206

Query: 231 FGYI 234
            G +
Sbjct: 207 NGLV 210


>gi|330973427|gb|EGH73493.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 87

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + A   LT +E   L+    G ++ EI+   G S  TV+ +  +   K    +   A+  
Sbjct: 18  TPATVQLTAKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVM 77

Query: 228 AIRFGYI 234
           AIR G I
Sbjct: 78  AIRQGVI 84


>gi|294815261|ref|ZP_06773904.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC
            27064]
 gi|294327860|gb|EFG09503.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC
            27064]
          Length = 1034

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%)

Query: 121  PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
                   + G    T E  + A    +    +                     LT RE  
Sbjct: 915  SAADTARRVGDRPLTEEIALTARGARLALPASASGPDGPHGPAAAPEPGPGLGLTPREED 974

Query: 181  CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
             L+L   G ++ +IA+ L +S  T + ++ +   KL    R +A A A R   
Sbjct: 975  VLRLVSAGRSNRQIAQTLSISPKTASVHVSNILAKLGVSGRGEAAALAHRLRL 1027


>gi|317054305|ref|YP_004118330.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
 gi|316952300|gb|ADU71774.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
          Length = 900

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           AH     V                 LT+RE   L L   GY++E+IA +L ++  T+  +
Sbjct: 811 AHFDEGFVSRLLNHPDVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELDIAATTIKTH 870

Query: 209 LGSATVKLDAVNRIQAIAKA 228
           + +   KL   +R QA+ +A
Sbjct: 871 IRNLYQKLGVSHRSQAVNQA 890


>gi|302878856|ref|YP_003847420.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581645|gb|ADL55656.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 211

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 14/156 (8%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE----FLMLANEVII 147
           +  +   E+   L  R+         +              +            + + ++
Sbjct: 54  LDLDMPGENGANLIERIRRHYPDLLILILSAHDEIKVVSRAVQAGASGYICKDCSPKTLL 113

Query: 148 EAHGACYQ-------VITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEK 197
           EA             ++ + L        A  +L   + RE    +L  +G ++++I+ +
Sbjct: 114 EAIHKVVATGKYLSPLMAEELAYTSAIPQANNSLALLSSREQEIFRLLVEGLSNDDISRQ 173

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L +S  TV+A+  +   KL   N ++ +  +I+   
Sbjct: 174 LFISDRTVSAHKINLLNKLGLKNVVELVHYSIQHQL 209


>gi|300777620|ref|ZP_07087478.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300503130|gb|EFK34270.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 212

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +  ++   +L+ERE     L   GY + EI+ +L L + TV+ Y      KL+  N +  
Sbjct: 140 EAPANPLESLSEREKEIFDLLIQGYGNIEISNELNLHLSTVSTYKTRIYKKLNIKNTVDL 199

Query: 225 IAKAIRF 231
           +    R 
Sbjct: 200 VRLGDRN 206


>gi|297191334|ref|ZP_06908732.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720655|gb|EDY64563.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 220

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQ 183
                  + T     + +     A                  S     R L+ RE   L+
Sbjct: 109 AGGVKGYVVTGTRTNIGHPTRPGAAPIGAAANRMHRRPPGAPSHPGGYRELSGREVEVLR 168

Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L  +G +++ I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 169 LVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|149278558|ref|ZP_01884694.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149230553|gb|EDM35936.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 164 FKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
            ++ + A    A + T+RE   LQL   G+T+ EIA+KL LS  TV  +      K  + 
Sbjct: 140 SERVNPASNHNADDFTQREMEILQLIALGHTNSEIADKLFLSKRTVEGHRQLLLNKTQSR 199

Query: 220 NRIQAIAKAIRFGYI 234
           N    I  A   G +
Sbjct: 200 NSAHLIKTATVMGLV 214


>gi|90417180|ref|ZP_01225107.1| transcriptional regulator, LuxR family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90330956|gb|EAS46217.1| transcriptional regulator, LuxR family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 275

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 29/229 (12%)

Query: 20  RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET--YGDDFL 77
            + ++   +   N  +            Q L+       L+     +  +      D F 
Sbjct: 28  LVQMLNTLVPFDNAVILHY-----RHDEQPLLIYNDTPPLEIKRQIDTFVSAAFLIDPFY 82

Query: 78  FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN-----GYV 132
                     + +            +         L    + F V L   +      G +
Sbjct: 83  RAAVDYRASGLHRLSDLAPRGFEDTEYYRSYFRYTLIKDEVGFIVHLSADQFINISMGRM 142

Query: 133 IFTSEFLMLANEVIIEAHGACYQVITD-------FLELFKKRSSA----------ARNLT 175
            F+  F      ++ +       V            ++ + R  +             LT
Sbjct: 143 TFSQPFNRAQISLLEDITEVIEAVCKQQWAGENGVQQVPENRLPSQLDSALKDFGTAYLT 202

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           +RET  +QL   G++++ IAE+LG+S  TV  +  ++  KLD  ++ + 
Sbjct: 203 DRETQVVQLFLHGHSTKSIAERLGISPETVKLHRKNSYAKLDVSSQAEL 251


>gi|73540228|ref|YP_294748.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72117641|gb|AAZ59904.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 212

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 12/155 (7%)

Query: 92  IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANEVIIEAH 150
           ++ + + ++   L  RL         +              +       +     + E  
Sbjct: 58  VELDALGQAGITLIKRLAARHPDVRLLVLSDSDATMAPVQALRAGAHGFVPRQRDLAEMV 117

Query: 151 GACYQVITDFLELFKKRSSAAR-----------NLTERETSCLQLAGDGYTSEEIAEKLG 199
            A   V++ +L        AAR            LT RE + LQ    G++++ I  +L 
Sbjct: 118 QAARGVMSGYLVFPTHTLDAARKLRLPSAGKLARLTARELTVLQYLARGHSNKTIGARLL 177

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +S  TV+ +  +   KL+  + ++ +  A +   +
Sbjct: 178 ISSKTVSTHKTNIMCKLNVGSVVEMVDYARQHRLL 212


>gi|19553757|ref|NP_601759.1| regulatory-like protein [Corynebacterium glutamicum ATCC 13032]
 gi|62391399|ref|YP_226801.1| LuxR family regulatory protein [Corynebacterium glutamicum ATCC
           13032]
 gi|145296555|ref|YP_001139376.1| hypothetical protein cgR_2464 [Corynebacterium glutamicum R]
 gi|21325332|dbj|BAB99953.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
 gi|41326740|emb|CAF21222.1| Bacterial regulatory protein, LuxR family [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846475|dbj|BAF55474.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 281

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
             +   ++  +    C Q++T        R      L+ RE   L     G+T+ E AE+
Sbjct: 190 NRVTDEDLRRDLEELCDQMVTPV------RIKQTTKLSARELDVLACVALGHTNVEAAEE 243

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +G+   TV +YL S   KL A  R +A+  A R G
Sbjct: 244 MGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 278


>gi|332283747|ref|YP_004415658.1| LuxR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330427700|gb|AEC19034.1| LuxR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 203

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           LT RE        +G T +E A  LG+S  TV  +      KL A N  + ++K
Sbjct: 141 LTPREQEVSGFIVNGLTCKETAIALGISHRTVEVHRARVMKKLGAKNTAELVSK 194


>gi|295396479|ref|ZP_06806640.1| possible ATP-dependent transcription regulator LuxR [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970671|gb|EFG46585.1| possible ATP-dependent transcription regulator LuxR [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 851

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            ++ERET  LQL   G ++ +IA+ + L V+TV  +L +   +L   NR   +  A + G
Sbjct: 789 QMSERETQILQLLASGKSNRQIADSVFLGVNTVKWHLKNLYRRLGVSNRDDCVKVARQRG 848

Query: 233 YI 234
            +
Sbjct: 849 MV 850


>gi|154493931|ref|ZP_02033251.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC
           43184]
 gi|154086191|gb|EDN85236.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC
           43184]
          Length = 202

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ RE   +     G T+ EIA++L LS HTV  +  +   KL   +       AI    
Sbjct: 135 LSAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVNKL 194

Query: 234 I 234
           +
Sbjct: 195 V 195


>gi|94264892|ref|ZP_01288666.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93454662|gb|EAT04930.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 227

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%)

Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216
             +  +    +S    +L++RE   +     G+TS EIA +  +S  TV  Y   A  KL
Sbjct: 148 HRENQQAGDHQSQLWHSLSQREQQVMLAVAQGHTSREIAARYFVSDKTVTTYRSRAMTKL 207

Query: 217 DAVNRIQAIAKAIRFGYI 234
              N+ + +   +  G +
Sbjct: 208 GLGNKAELVKMIMDLGLL 225


>gi|320094467|ref|ZP_08026245.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978600|gb|EFW10165.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 243

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 44/118 (37%)

Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
           AG+   VR     +  +       +L       A                +       LT
Sbjct: 112 AGLFDAVRTVHSGDSVISPGPTSTLLRALRAPGAPPLAAVPTPADAAADGRGILERAGLT 171

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            +E   L+L   G T++EI +   +S+ TV  ++G    K  A +R+Q +  A+R G 
Sbjct: 172 GKEVEILRLIARGLTNQEICDAQWVSMATVKTHVGHLLAKTGARDRVQLVLLALRAGL 229


>gi|311069668|ref|YP_003974591.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870185|gb|ADP33660.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 213

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT RE   LQ    G+T++EIA+ L LS  ++   L S   KL+  +R +A+  A   
Sbjct: 151 DVLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSD 210

Query: 232 GYI 234
           G +
Sbjct: 211 GVL 213


>gi|261211707|ref|ZP_05925994.1| tetrathionate reductase two-component response regulator [Vibrio
           sp. RC341]
 gi|260839057|gb|EEX65689.1| tetrathionate reductase two-component response regulator [Vibrio
           sp. RC341]
          Length = 200

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTER 177
            G       +   +              A  + I   LE  + R+      S  ++LT+R
Sbjct: 84  TGHGDVPMAVEALKEGACDFFQKPVDGDALVKAIDHALEQSETRAEQYNMQSKLKSLTKR 143

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           E    +L   G  ++E+A+ L +S+ T+  +  +   KL+  N    I 
Sbjct: 144 ERDIAELVVKGMKNQEMADALCVSLRTIEVHRANVMKKLEVSNIAGLIR 192


>gi|257890986|ref|ZP_05670639.1| response regulator [Enterococcus faecium 1,231,410]
 gi|257827346|gb|EEV53972.1| response regulator [Enterococcus faecium 1,231,410]
          Length = 202

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           + +ERE + ++    G  ++EIA+ L LS  TV  Y+     KLD  +R Q   
Sbjct: 149 SFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAI 202


>gi|227818337|ref|YP_002822308.1| hypothetical protein NGR_b00840 [Sinorhizobium fredii NGR234]
 gi|227337336|gb|ACP21555.1| hypothetical protein NGR_b00840 [Sinorhizobium fredii NGR234]
          Length = 365

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           +   +L+ERE   L     G + + IA +LG+SV T+  +      +L      +AI  A
Sbjct: 298 ARVESLSERERQVLHALVAGCSHKVIAHELGISVRTIEVHRARMMRRLGVRTLAEAIKLA 357

Query: 229 IRFG 232
           I  G
Sbjct: 358 IISG 361


>gi|259907792|ref|YP_002648148.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae
           Ep1/96]
 gi|224963414|emb|CAX54902.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae
           Ep1/96]
 gi|283477661|emb|CAY73577.1| Nitrate/nitrite response regulator protein homolog [Erwinia
           pyrifoliae DSM 12163]
 gi|310768295|gb|ADP13245.1| Nitrate/nitrite response regulator protein NarP [Erwinia sp.
           Ejp617]
          Length = 209

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 11/124 (8%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACY-------QVITDFLELFKK 166
           +   V         +               E ++                +     L   
Sbjct: 83  VVLTVSALRRDFTALQEAGAEGYLLKDSDPEELLAQIIKVAEGGVAWSHRLQAPGALESW 142

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           +      LT RE   L+    G T++++AE L +S  TV  ++ +   KL+   R+ A  
Sbjct: 143 KCDPLALLTVREQEVLKEVASGLTNKQVAENLAISEQTVKVHIRNVLRKLNVRTRVAATV 202

Query: 227 KAIR 230
             + 
Sbjct: 203 LWLE 206


>gi|254500728|ref|ZP_05112879.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222436799|gb|EEE43478.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 212

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 13/155 (8%)

Query: 93  QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL----MLANEVIIE 148
                + +  + +  +       A +   +         V+           ++   +I 
Sbjct: 57  DVSMPVMNGLEAAAEVRKSFPEIAVLILSIYDNSEYVRGVVQAGARGYILKDISAPEMIT 116

Query: 149 AH-------GACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLG 199
           A              +   L      +       LT+RE   L     G  ++E+A+ LG
Sbjct: 117 AISSVASGGYYFSSAVGPTLVGTATSAPIEDPYGLTDRERQVLTAIAKGLPNKEVAKSLG 176

Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +SV TV ++  +   K+   N  Q    A   G +
Sbjct: 177 ISVRTVESHRLNLREKVGNKNAAQLYKVAQDLGLL 211


>gi|254390702|ref|ZP_05005915.1| hypothetical protein SSCG_02977 [Streptomyces clavuligerus ATCC
           27064]
 gi|197704402|gb|EDY50214.1| hypothetical protein SSCG_02977 [Streptomyces clavuligerus ATCC
           27064]
          Length = 247

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TER 177
                   + ++        +   V+ +   A               +   R L   T+R
Sbjct: 126 TADGARGADAWLQEQRIDCHVIQRVLQQLVDANAGPDGAERSPHSSGTLLERGLNRVTQR 185

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E + L L   G ++++IA  LG+S+H V  ++ +  +KLD+ NR +   K  + G +
Sbjct: 186 ERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGLL 242


>gi|147675130|ref|YP_001217202.1| response regulator VieA [Vibrio cholerae O395]
 gi|146317013|gb|ABQ21552.1| response regulator VieA [Vibrio cholerae O395]
 gi|227013559|gb|ACP09769.1| response regulator VieA [Vibrio cholerae O395]
          Length = 584

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 115 FAGIAFPVRLGFHKNG-------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
           + G    +  G             V+  +  +  ++ ++++A  +  +      EL +  
Sbjct: 469 YRGALLVLHDGLTAEAQEDEPKAIVVKANTLMETSSRILLQAQQSNVRPQAQQEELAQ-- 526

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
                 L+ERE +  ++  +G T++EIA +L ++  TV+ Y      KL   + ++ +  
Sbjct: 527 ------LSERELTVAKMLVEGLTNKEIALQLDINQKTVSTYKTRIMTKLGIKSAMELVRF 580


>gi|167646930|ref|YP_001684593.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167349360|gb|ABZ72095.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 207

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 12/130 (9%)

Query: 116 AGIAFPV-----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170
            G+  PV               +       +          A  +   + LE    R++ 
Sbjct: 73  RGVTMPVVVLTGHGDVTVAVRAMKAGAVDFIEKPFEKAVLLAAIEAAFERLEDADGRAAR 132

Query: 171 ARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           A +       LT RE   L+    G  ++ IA  LG+S  TV  +  +   KL   +  +
Sbjct: 133 AADAAVAVAALTGREQDVLKGLAQGLPNKTIAYDLGISPRTVEVHRANLMSKLKVRSLSE 192

Query: 224 AIAKAIRFGY 233
           A+  A   G 
Sbjct: 193 ALRIAFSAGM 202


>gi|27375497|ref|NP_767026.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27348634|dbj|BAC45651.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 211

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 1/94 (1%)

Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193
           F    ++   +  I A+    Q      +           LT RE   L+    G +++E
Sbjct: 110 FRGSEIVGRLDEAIGAYAR-RQAENAAPKFGSLHFPGREPLTRREREVLEQFAAGASNKE 168

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
               LG+S  T+  +  +   KL A N    I  
Sbjct: 169 AGRTLGISPRTIEDHRANIMKKLGARNAADLIRI 202


>gi|116626924|ref|YP_829080.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230086|gb|ABJ88795.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 230

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +       L+ RE        +G  +++IA+ L +S  TV+ Y  S   KL+  + +  +
Sbjct: 150 RAEDPLAALSPREMEVFSYLVNGLRAKDIADLLEISPKTVDTYRASLMRKLNVHDLVGLV 209

Query: 226 AKAIRFGY 233
             AI    
Sbjct: 210 KFAIERNL 217


>gi|332991563|gb|AEF01618.1| putative regulator in two-component regulatory system [Alteromonas
           sp. SN2]
          Length = 217

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 6/140 (4%)

Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQV 156
                 V +               +     G++  T+    +AN V             +
Sbjct: 70  RKLFPDVPVAVVSGTEDTQLISKIMSAGALGFIPKTASSGDIANAVQAILDGDVWLPPNL 129

Query: 157 ITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                E+ ++ S  A    +LT  +   L    DG  +++I   L ++  TV A++ +  
Sbjct: 130 SDSVDEIDEEFSELADNVASLTPSQYKVLCFMRDGLLNKQIGYNLDIAEATVKAHVTAIF 189

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            KL   NR QA+  A +   
Sbjct: 190 KKLGINNRTQAVLIASQLEL 209


>gi|323529168|ref|YP_004231320.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323386170|gb|ADX58260.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 202

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           +L+ RE   LQ    G ++ +IA +L LS  TV+ Y      KL   +    I  A    
Sbjct: 140 SLSAREVEVLQHLARGASNRDIASRLYLSDKTVSTYKSRIQEKLGVSSLAALIEFAALHK 199

Query: 233 YI 234
            I
Sbjct: 200 LI 201


>gi|239941886|ref|ZP_04693823.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291445336|ref|ZP_06584726.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291348283|gb|EFE75187.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 234

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN-----LT 175
           L     G+++  S    L   V + A        +V+    +   K ++ A       LT
Sbjct: 97  LRAGAAGFLLKDSAVDELIPGVRLLAAGGSALSERVVRSLPDGAGKEAAPADPPGARLLT 156

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
            RE   L+L   G ++EEI  +L LS  TV  ++ S   KL A NR+QA   A
Sbjct: 157 AREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIA 209


>gi|190576409|ref|YP_001974254.1| putative two component system response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014331|emb|CAQ47978.1| putative two component system response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
             R LT ++   LQ+ G G  +++IA  L +S  T+ A++ +   KL   NR QA+  A
Sbjct: 146 RLRELTPQQFRVLQMLGAGRLNKQIAYDLSVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|167034135|ref|YP_001669366.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|150014692|gb|ABR57213.1| PedR1 [Pseudomonas putida]
 gi|166860623|gb|ABY99030.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + LT ++   L+    G ++++IA  L ++  TV A++ +   KL+  NR+QAI  A
Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|10955061|ref|NP_059717.1| hypothetical protein pTi_045 [Agrobacterium tumefaciens]
 gi|3064079|gb|AAC18654.1| trlR [Agrobacterium tumefaciens]
          Length = 212

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 8/155 (5%)

Query: 17  LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
           L   L  I +      +A   I          + I  + NY  +   +         D  
Sbjct: 21  LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHREWQSVYFDKKFDTLDPV 72

Query: 77  LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
           +    S      W   QE   +    +    L       +GI+ P++            S
Sbjct: 73  IKRARSRKHIFTWSGEQEGPSLSKDERTFYALAADFGIRSGISIPIKTANGSMSMFTLAS 132

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171
           E  ++  +  I+A  A   +      +   R++  
Sbjct: 133 EKPVIDLDREIDAVAAAATIGQIHSRISFLRTTPT 167


>gi|313206656|ref|YP_004045833.1| transcriptional regulator, luxr family [Riemerella anatipestifer
           DSM 15868]
 gi|312445972|gb|ADQ82327.1| transcriptional regulator, LuxR family [Riemerella anatipestifer
           DSM 15868]
 gi|315022153|gb|EFT35182.1| transcriptional regulator, LuxR family protein [Riemerella
           anatipestifer RA-YM]
 gi|325335902|gb|ADZ12176.1| transcriptional regulator [Riemerella anatipestifer RA-GD]
          Length = 252

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            L+ERE + L+L+  G+T  EI+EKL ++  TV  +      KL+  N  +A+A A    
Sbjct: 191 KLSEREATVLELSARGFTINEISEKLFVTPDTVKFHRRKIFDKLNVQNISEALAYAKINK 250

Query: 233 YI 234
            +
Sbjct: 251 LV 252


>gi|303258385|ref|ZP_07344388.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|302858831|gb|EFL81919.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
          Length = 205

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
           ++LT +E    +L  +G  +++IA++LG++  TV  +      KLDA N I+
Sbjct: 142 QSLTSKEKEVARLVSEGLLNKQIADELGIAERTVQTHRTMVYRKLDAKNNIE 193


>gi|299069217|emb|CBJ40477.1| transcription regulator for hrp genes expression [Ralstonia
           solanacearum CMR15]
          Length = 166

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
           +    + + +   L  E      G          E      +    LT R+   L+ A  
Sbjct: 53  EAVGELPSGQLQPLTLEQTYAMLGRILDARRHGPEPRPDGGARLSALTPRQHDILREAAH 112

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           G ++ EIA+ L +SV TV +++    ++LDA NR +  A 
Sbjct: 113 GKSNVEIAQTLHISVETVKSHVRQILMRLDARNRTELAAI 152


>gi|170695941|ref|ZP_02887080.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170139125|gb|EDT07314.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 266

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEE 193
           + ++ A   +   H    + + D L     + +AA     L+ERE         G    +
Sbjct: 165 DEIVRAIRAVARGHRYLSEAVADTLADNLDKPAAARPHEALSEREFQIFCKLAAGQIPTQ 224

Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           IAE+L LSV TV+ Y      K+   N       AI+ G I
Sbjct: 225 IAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 265


>gi|158392735|dbj|BAF91145.1| DNA-binding response regulator [Pseudomonas putida]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + LT ++   L+    G ++++IA  L ++  TV A++ +   KL+  NR+QAI  A
Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|146294881|ref|YP_001185305.1| response regulator receiver protein [Shewanella putrefaciens CN-32]
 gi|145566571|gb|ABP77506.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           CN-32]
          Length = 248

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 68/240 (28%), Gaps = 17/240 (7%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +++   L   +  I   +K   F+ +                +  N    +         
Sbjct: 10  ANTASTLKEVIQAITAALKLHGFSGFWFQGVPHCAYENYHFPKETNLFSQASLRKP-NAS 68

Query: 71  TYGDDFLFHFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129
                 +       L  +          +++S     RL       A + F         
Sbjct: 69  VASSPVVAELQRFYLSQVAANDFNFGFSLDTSKSYMYRLSCDKGDKASLLFSKHHIQTVL 128

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---------------AARNL 174
            + +            I+ +H +   ++   L    K +                 +  L
Sbjct: 129 SWPVTWHSNRHWVGRFILLSHLSDSDILLTGLSATLKEAQNKLFECNKQLFNPFLQSSLL 188

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +     L +  +G  ++EI+ +L +S+  V  ++ S   K  A NR   I  A ++  I
Sbjct: 189 KDNARDILLMVANGLQNDEISTQLPISIRGVEYHMESMRRKFGATNRANLIHLAHQYELI 248


>gi|317489593|ref|ZP_07948098.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830115|ref|ZP_08163572.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|316911325|gb|EFV32929.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487582|gb|EGC90020.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 458

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189
              IF       A   +     A   V    L L          LT RE   L L  +  
Sbjct: 361 VCCIFLFSRRRDAPSKLHAESIADDSVRLSELSLDDAAFERYD-LTMREREVLLLLLNRL 419

Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           T EEIAE+L +S +TV  ++G+   K    +R + ++K
Sbjct: 420 TYEEIAERLFISTNTVKTHVGNVYKKTGVSSRKELVSK 457


>gi|298682192|gb|ADI95259.1| PedR1 [Pseudomonas putida]
 gi|313499256|gb|ADR60622.1| Two component LuxR family transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + LT ++   L+    G ++++IA  L ++  TV A++ +   KL+  NR+QAI  A
Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|295097111|emb|CBK86201.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 150

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           L+ER+   L+L   G +++EI   L +S  TV A+L +   +LD  NR QA   
Sbjct: 91  LSERQREVLKLLAAGESNKEIGRNLNISAATVKAHLETLFRRLDVKNRTQAAMY 144


>gi|258653900|ref|YP_003203056.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258557125|gb|ACV80067.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 205

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
                S     LT RE   L+L  +G T++ IAE+L LS  TV ++L   + KL   +R 
Sbjct: 133 ADPDLSGRLGRLTARELDVLRLVAEGRTNKWIAEQLSLSALTVKSHLARISRKLGTGDRS 192

Query: 223 QAIAKAIRFGY 233
             +A A+R G 
Sbjct: 193 HQVAVAMRAGM 203


>gi|152985508|ref|YP_001347971.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960666|gb|ABR82691.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7]
          Length = 269

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 65/236 (27%), Gaps = 21/236 (8%)

Query: 8   GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67
            ++             +       N A    +++                          
Sbjct: 18  IERLDRADFWRSLAGTLGEFAPVDNSAALIFSNSTPLILSFMEEEREEVEPDPLISRYIT 77

Query: 68  LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127
            +    D F     +     ++      +    + +         +    + + V L   
Sbjct: 78  GLY-RQDPFYLISRTCRHGGLYHLPDIVSEQFEATEYYNAYFSHYVVTDEVQYNVPLDHE 136

Query: 128 KNGYVIFTSEFLMLANEVII--EAHGACYQVITDFLELF------------------KKR 167
           +   +   SE    A ++ +          ++   +                     +  
Sbjct: 137 RTLCLSLGSESRFGAEQIALFELLRPWVIALMKKRVHFEGALREEVGVEAKVEDMDMQAW 196

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                 LT RE+  ++L  DG++++EIA++L LS+ T+  +      KL+  +  +
Sbjct: 197 KGLISPLTARESDVIRLMLDGHSNKEIADRLALSIATIKVHRRHIYAKLNVKSHSE 252


>gi|17223650|gb|AAK50368.1| response regulator [Azoarcus sp. T]
          Length = 218

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            +L+ RE     L  DG +S+EIA  LG+S  TV A+ G    KL   +  + I
Sbjct: 144 ESLSLREKEIFDLVVDGNSSKEIARLLGISPKTVEAHRGRLMSKLGVRSLGELI 197


>gi|28871776|ref|NP_794395.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966768|ref|ZP_03394919.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383276|ref|ZP_07231694.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062485|ref|ZP_07254026.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302133467|ref|ZP_07259457.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28855028|gb|AAO58090.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928618|gb|EEB62162.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331018915|gb|EGH98971.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 77

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 39/76 (51%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
              +++   + S  +NLT+RE   L+ + +G T+ +IA  L L   T++ ++ SA  K+ 
Sbjct: 1   MSTMDINFTQPSPTKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG 60

Query: 218 AVNRIQAIAKAIRFGY 233
             N+  A  +A   G 
Sbjct: 61  VCNKTAAAVQAALSGM 76


>gi|83945712|ref|ZP_00958057.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83850913|gb|EAP88773.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 210

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211
              ++I  F       +     LT RE   L L G G  + E A  LGLS HT+  ++ S
Sbjct: 129 IARRIIEHFRRTALVETDGGD-LTPRERDVLSLIGRGLRNAEAASALGLSEHTIAGHIKS 187

Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233
              KL    R +A   A R G 
Sbjct: 188 VYSKLGISTRAEAALLASRLGL 209


>gi|115359004|ref|YP_776142.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284292|gb|ABI89808.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 227

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             LT R+   L+L  +G ++++I   L ++  T+  +L +   ++   NR +A     R 
Sbjct: 150 ERLTPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVSNRTEAALWLARH 209


>gi|26990263|ref|NP_745688.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|148547444|ref|YP_001267546.1| response regulator receiver protein [Pseudomonas putida F1]
 gi|24985212|gb|AAN69152.1|AE016549_1 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
 gi|148511502|gb|ABQ78362.1| response regulator receiver protein [Pseudomonas putida F1]
          Length = 210

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 120 FPVRLGFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175
            P+ +   K G   F     ++ L+L +      H    +     L L + R      LT
Sbjct: 87  VPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALEHAGLARQGDQALALVQAR---IDGLT 143

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            RE         G  + EIAE+LG+SV TV+ Y G    +L A +  + +  AI  G
Sbjct: 144 PRERDVFVPLAQGLNNREIAEQLGISVKTVDLYRGRVMKRLQAGSLAELVGMAIACG 200


>gi|307296356|ref|ZP_07576183.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878158|gb|EFN09381.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 234

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------------LTE 176
           ++ +S  +     V++             + + + R+  A                 LT+
Sbjct: 115 LLRSSTDIATMRRVLLLLREGLAVYHASLVAMLQARAPGASESLGERVALAVDKFKLLTK 174

Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R+   L+L   G ++++IA++L +S  TV  ++ +      A NR Q +A
Sbjct: 175 RQRDVLRLLAQGASNKDIAQRLNISESTVKVHVRAIMAVNGASNRTQIVA 224


>gi|300694155|ref|YP_003750128.1| transcription regulator protein, luxr family [Ralstonia
           solanacearum PSI07]
 gi|299076192|emb|CBJ35505.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 175

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%)

Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204
            +++         TD        S     LT R+   L+    G ++ EIA  L +SV T
Sbjct: 81  AMLDRALKHGAPKTDMAAASSSASKQRPALTPRQQDILREVASGKSNVEIARTLHISVET 140

Query: 205 VNAYLGSATVKLDAVNRIQAIAK 227
           V  ++    ++L+A NR + +A 
Sbjct: 141 VKTHMQQILMRLEARNRTELVAM 163


>gi|294812712|ref|ZP_06771355.1| Response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294325311|gb|EFG06954.1| Response regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 240

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TER 177
                   + ++        +   V+ +   A               +   R L   T+R
Sbjct: 119 TADGARGADAWLQEQRIDCHVIQRVLQQLVDANAGPDGAERSPHSSGTLLERGLNRVTQR 178

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E + L L   G ++++IA  LG+S+H V  ++ +  +KLD+ NR +   K  + G +
Sbjct: 179 ERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGLL 235


>gi|311739386|ref|ZP_07713221.1| DNA-binding response regulator [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305202|gb|EFQ81270.1| DNA-binding response regulator [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 202

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 140 MLANEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
               E + EA    +  +   D     +   +    LT RE    +   +G  + +IA  
Sbjct: 106 DTPPEQLAEAIRRVHAGLKVIDPALAQETIFTPDNPLTTREKEVTRHVLEGSDTRQIAGH 165

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           L LS  TV   + S   K    NR +A   A   G+I
Sbjct: 166 LHLSTGTVRNIVSSLIAKTGTGNRYEAATTAHARGWI 202


>gi|121594476|ref|YP_986372.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|222110849|ref|YP_002553113.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|120606556|gb|ABM42296.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
 gi|221730293|gb|ACM33113.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 208

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 148 EAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201
           E  G   +++    E F        R +    LT RE   L+    G  +++IA+ LG+S
Sbjct: 114 ELLGLVERMLDHAREAFADYQQAASRDALLSKLTSREAQVLERIVAGRLNKQIADDLGIS 173

Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           + TV A+  +   KL+A      +  A+
Sbjct: 174 IKTVEAHRANIMEKLNANTVADLLKIAL 201


>gi|172063800|ref|YP_001811451.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996317|gb|ACB67235.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 227

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L      A   LT R+   L+L  +G ++++I   L ++  T+  +L +   ++   NR 
Sbjct: 141 LPAGDDRAFERLTPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVSNRT 200

Query: 223 QAIAKAIRF 231
           +A     R 
Sbjct: 201 EAALWLARH 209


>gi|115379306|ref|ZP_01466417.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363688|gb|EAU62812.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 884

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT  E   L+    G ++ E+ E + L   TV  +L     K+   + ++A+  A++ G
Sbjct: 821 GLTPAEFEVLRYVAKGLSNAEVGEVMTLERRTVRTHLSHIYRKMGVNSHVEAVVLALKAG 880

Query: 233 YI 234
            +
Sbjct: 881 VV 882


>gi|150377229|ref|YP_001313824.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150031776|gb|ABR63891.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 230

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 31/74 (41%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               E  +        LT R+   LQL   G +++EIA KL L   TV  ++ +    L 
Sbjct: 147 ARVGEAPQGSHRTIEFLTPRQREVLQLLVQGLSNKEIARKLKLGEGTVKIHMAALFRSLR 206

Query: 218 AVNRIQAIAKAIRF 231
             NR +A A   R 
Sbjct: 207 VRNRQEAAAAGARL 220


>gi|229525821|ref|ZP_04415226.1| BarA-associated response regulator UvrY [Vibrio cholerae bv.
           albensis VL426]
 gi|229339402|gb|EEO04419.1| BarA-associated response regulator UvrY [Vibrio cholerae bv.
           albensis VL426]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGIL 209


>gi|148548821|ref|YP_001268923.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148512879|gb|ABQ79739.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 219

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
             AH    Q +    +  K+ +    NLT R+   L+L   G ++ EIA  LGLS+ TV 
Sbjct: 129 AIAHTVINQAL-RHTKQGKQSAGERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVE 187

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            +      +L   +    +  A+R   I
Sbjct: 188 THRSQIMKRLQIHDVAGLVLFAVREKII 215


>gi|311898876|dbj|BAJ31284.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 246

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA R L+ RE   L+L  +G +++ I   +GLS  TV ++L     KL   +R   +A A
Sbjct: 180 SAYRELSGREVEVLRLVAEGQSNKAIGVAMGLSALTVKSHLARIARKLGTGDRAGMVAVA 239

Query: 229 IRFGYI 234
           +R G I
Sbjct: 240 LRTGII 245


>gi|307296141|ref|ZP_07575972.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Sphingobium chlorophenolicum L-1]
 gi|306878312|gb|EFN09534.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Sphingobium chlorophenolicum L-1]
          Length = 844

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-----LFKKRSSAARNLTER 177
           R          +    L+   +++  AHG   +V+                     LT R
Sbjct: 728 RGFCRTAVDCGWGLTSLLSEPDLLSAAHGPAAEVLGRLRSRYGICADTAGDQPVDPLTAR 787

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           E+  L L   G TS+ IA+ + LS+ T   ++ +   KL   NR  A+++A R 
Sbjct: 788 ESEVLALLDSGLTSQAIADHIDLSLSTTKWHIQNIYNKLGVRNRSGALSRARRL 841


>gi|302527842|ref|ZP_07280184.1| predicted protein [Streptomyces sp. AA4]
 gi|302436737|gb|EFL08553.1| predicted protein [Streptomyces sp. AA4]
          Length = 340

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 89  WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148
           W+S  +         L   +  G    A   F  R+   + G+++  +  L+  ++    
Sbjct: 203 WESELDAIADGRFAVLLRAVAVGAQAAASGTFRARVRDARGGWIVLQASRLVSDDDARDV 262

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A         + L        AA  LT RE    +    G ++ +IA +LG+S +TV  +
Sbjct: 263 AVTIRRATGGELL----DVLLAAYRLTARERDVCREVLSGLSTSDIAARLGISANTVQDH 318

Query: 209 LGSATVKLDAVNRIQAIAK 227
           L S   K+   +R +  A+
Sbjct: 319 LKSVFGKVGVRSRGELTAR 337


>gi|238059423|ref|ZP_04604132.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237881234|gb|EEP70062.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 970

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 81  NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140
                P  +  +++   +    + S     G L                G    ++E   
Sbjct: 824 RHHPYPAAYSRLRQAEALL--ARRSRTASAGRLLREAYQV-----AQGLGAEPLSTEIRT 876

Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200
           LA    +             +   +        LT RE   L    +G T++EI ++L +
Sbjct: 877 LAARARVALEERGASADGRSVTRAEPVGDELAVLTTREREVLAAVAEGLTNKEIGQRLFI 936

Query: 201 SVHTVNAYLGSATVKLDAVNRIQA 224
           S  T+  ++     KL    R+QA
Sbjct: 937 SERTIGVHVSHIFDKLQVRTRVQA 960


>gi|226309128|ref|YP_002769088.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226188245|dbj|BAH36349.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 857

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
            +  +   +A  LT  E + L+    G T+E IA+ L LSV+T+  +L     KL+  NR
Sbjct: 785 RIRPQELVSAPILTPGEYTVLRELASGDTTESIADTLFLSVNTIKTHLRGIYRKLEVSNR 844

Query: 222 IQAIAKAIRFGYI 234
             A+  A R G I
Sbjct: 845 RDALKAARRGGLI 857


>gi|157693590|ref|YP_001488052.1| response regulator ComA [Bacillus pumilus SAFR-032]
 gi|194015634|ref|ZP_03054250.1| competence protein A [Bacillus pumilus ATCC 7061]
 gi|157682348|gb|ABV63492.1| response regulator ComA [Bacillus pumilus SAFR-032]
 gi|194013038|gb|EDW22604.1| competence protein A [Bacillus pumilus ATCC 7061]
          Length = 213

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%)

Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197
              L  EV+I+       +     +  + + +    LTERE   L+    GYT++EIA+ 
Sbjct: 117 HRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLILREVEKGYTNQEIADV 176

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L LS  ++   L S   KL+  +R +A+  A
Sbjct: 177 LHLSKRSIEYSLTSIFNKLNVGSRTEAVLIA 207


>gi|153827535|ref|ZP_01980202.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|149738540|gb|EDM52895.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +   +L+ERE   + +   G    +I+E+L LS  TVN+Y      KL+
Sbjct: 133 MALSQFSPASENPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLN 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGIL 209


>gi|170736721|ref|YP_001777981.1| ATP-dependent transcription regulator LuxR [Burkholderia
           cenocepacia MC0-3]
 gi|169818909|gb|ACA93491.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia cenocepacia MC0-3]
          Length = 921

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 13/181 (7%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQLSVRLE 109
                      E        H         W             +    ES+   +    
Sbjct: 726 ARLLLADARANEAAQRMATVHAVLAARGFDWFAAQAAVLHAIALDHAGDESAALAAFARA 785

Query: 110 GGLLPFAGIAFP-VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE---LFK 165
                  G+    V  G      +    +       V         +             
Sbjct: 786 LEYGQGNGLVRTFVDEGAAAERLLARMQKRADRFPAVGAWYLRDLARAFDAQRASGGAPA 845

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R  A  NL+ RE   L     G +++EIA  L ++  T+  +L +   KL+  +RIQA+
Sbjct: 846 TRPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRIQAV 905

Query: 226 A 226
            
Sbjct: 906 R 906


>gi|262167142|ref|ZP_06034856.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262024442|gb|EEY43129.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
          Length = 265

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 44/186 (23%), Gaps = 25/186 (13%)

Query: 63  DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122
                      D F           ++       +         +          ++  V
Sbjct: 67  QRYLTHAYLD-DPFYSALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVV 125

Query: 123 RLGFHKNGYVIF-TSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA--- 170
            L   ++  V     +      E I                      L L +    +   
Sbjct: 126 NLDGERSIVVYLGCFKPRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQEL 185

Query: 171 ------------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                       A+ L+ RE     L   G  S+EIA+ L +S  TV  +      +L  
Sbjct: 186 RTWVEQAIQSFGAQRLSPREQEITALLIQGLDSQEIADALAISHGTVKNHRKRIYAQLHV 245

Query: 219 VNRIQA 224
            +  + 
Sbjct: 246 SSLSEL 251


>gi|300771307|ref|ZP_07081183.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761977|gb|EFK58797.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 209

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +T RE   LQ A  G TS EIA+ L +S HTV ++  +   K    N    I  A+ +
Sbjct: 145 PKITRREKEILQEAAKGLTSTEIADVLFISSHTVESHRKNLIEKFKVKNIASVIGLALEY 204

Query: 232 GYI 234
           G I
Sbjct: 205 GLI 207


>gi|227888678|ref|ZP_04006483.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
 gi|227850765|gb|EEJ60851.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
          Length = 79

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            LT+RE   L L   GY++E+IA +L ++  T+  ++ +   KL   +R  A+  A + 
Sbjct: 14  PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 72


>gi|227015848|gb|ACP17945.1| putative two-component response regulator [Pseudomonas
           nitroreducens]
          Length = 208

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 38/63 (60%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L++RE + LQ   +GY+++EI+E++ +S  TV+ Y     +KL+A + +  I  A R 
Sbjct: 146 QRLSDREMAVLQYLANGYSNKEISEQMFISNKTVSTYKTRLLLKLNAHSLVDLIEFAKRN 205

Query: 232 GYI 234
             +
Sbjct: 206 ALV 208


>gi|190893145|ref|YP_001979687.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190698424|gb|ACE92509.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 305

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181
           + +       +       +  +E +     A  +   + L           +LT+RE+  
Sbjct: 199 ISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRF-------SLTQRESEV 251

Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           L     G  + +I E LGLS  TVN +L    VKL   NR  A  KA
Sbjct: 252 LLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|77163811|ref|YP_342336.1| two component transcription LuxR family regulatory protein
           [Nitrosococcus oceani ATCC 19707]
 gi|76882125|gb|ABA56806.1| two component transcription regulatory protein, LuxR family
           [Nitrosococcus oceani ATCC 19707]
          Length = 224

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           Q + +  +  ++       LT RE   + L   G  ++ IA  L +S+ TV  + G    
Sbjct: 142 QYLREEQKEREEIIIRMMRLTPREREVMALVLKGQPNKLIASDLDISIKTVEIHRGQVMK 201

Query: 215 KLDAVNRIQAIAKAI 229
           KL    +   I  A+
Sbjct: 202 KLQVRTQADLIHLAL 216


>gi|17547174|ref|NP_520576.1| response regulator VSRC transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17429476|emb|CAD16162.1| response regulator vsrc transcription regulator protein [Ralstonia
           solanacearum GMI1000]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 20/186 (10%)

Query: 48  QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107
           +  +  L  +  D      +                           E V ++    ++ 
Sbjct: 52  RPDVVLLDVWLSDCTGFDAMRELRGKLPEARFAFMS------AENTPEIVAKAQALGAIG 105

Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167
             G        +  V          IF  +    + + +  A+G                
Sbjct: 106 FIGKHADAHAFSQAVAG--------IFGGDSSFPSEDDLGMANGKNGASHGI------PI 151

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           + A   LT R+ S L L  +G  ++ IA +LGL+ +TV  ++ +   +L    RIQ I++
Sbjct: 152 TPAELGLTPRQGSVLALLLEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISR 211

Query: 228 AIRFGY 233
             RF  
Sbjct: 212 MERFRL 217


>gi|117922439|ref|YP_871631.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614771|gb|ABK50225.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3]
          Length = 248

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 17/240 (7%)

Query: 11  SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70
           +S++  L   +  I   +K   F+ +                E  +       +   +  
Sbjct: 10  ASTVSTLKDVIQGISTSLKLHGFSGFWFQGIPHCAYENYHFPEDTSLFSP-IALRKPIAS 68

Query: 71  TYGDDFLFHFNSGLL-PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF--------- 120
                 +       L  +          +++S     RL       A   F         
Sbjct: 69  VASSPIVAQLQRFYLNQVAANDTNFGLSLDTSKPYVYRLTNEKDTKACALFQKHNIQTVL 128

Query: 121 --PV--RLGF--HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
             P+             ++    +  +  + + +        + +  +        +  L
Sbjct: 129 SWPIVCHDQCRWTGRFMLLSQQSYSEIVLDGLADVLKEAQYKLFECNKPMFNPFLQSSLL 188

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            E     LQ+  +G  ++EI+ +L +SV  V  ++ S   K  A NR   I  A ++  I
Sbjct: 189 KENARDILQMVANGLQNDEISTQLPISVRGVEYHMESMRKKFGAANRANLIHLAHQYELI 248


>gi|332666175|ref|YP_004448963.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334989|gb|AEE52090.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%)

Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
           ++         RS     +T RE   L+L  D   ++EIA KL +S  TV ++  S   K
Sbjct: 140 LLDGMQSKKPSRSQYIPKITRREKEILRLIIDECNTDEIAAKLFISDTTVISHRKSLLRK 199

Query: 216 LDAVNRIQAIAKAIRFGYI 234
           L+  N    +  A  F  +
Sbjct: 200 LNVKNTAGLVRVAYEFNLL 218


>gi|331694577|ref|YP_004330816.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949266|gb|AEA22963.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 748

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
              R+     LT RE     L   G T+ EIA +L LSV TV  ++  A  K+    R Q
Sbjct: 674 DPWRAGPGAGLTRREREIAALVATGMTNREIAGRLQLSVRTVEVHVDHALTKVGLRTRTQ 733

Query: 224 AIAKAIRFGY 233
             A   + G 
Sbjct: 734 LAAWLHQDGL 743


>gi|300313654|ref|YP_003777746.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076439|gb|ADJ65838.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
             R L+ERE   L+    G +++E A  + +S  TV  ++ S   KL    R  A  K +
Sbjct: 421 PRRLLSEREAEVLRRISLGESNKEAARAMQISPSTVRTHVESIFRKLQCSTRAAATLKGL 480

Query: 230 RFGYI 234
             G I
Sbjct: 481 SLGLI 485


>gi|299068182|emb|CBJ39401.1| response regulator, LuxR family [Ralstonia solanacearum CMR15]
          Length = 210

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
              + L++RE         G +   IAE+L LSV TV+ Y      K+   +       A
Sbjct: 144 PLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYA 203

Query: 229 IRFGYI 234
           I+ G +
Sbjct: 204 IKNGLV 209


>gi|269126467|ref|YP_003299837.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311425|gb|ACY97799.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 232

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 33/105 (31%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
                  +   +LA  V                            LT RE   L   G+G
Sbjct: 111 EAVRTVAAGEGILAPAVTRRLIREFAARPGRPAAPLASPPPGPAELTPRERQVLGCLGEG 170

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
            ++ +IA +L ++  T   ++     KL   +R+QA   A     
Sbjct: 171 LSNAQIAARLNMAETTAKTHVSRILAKLGLRSRVQAAILAQELAL 215


>gi|269102848|ref|ZP_06155545.1| BarA-associated response regulator UvrY [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162746|gb|EEZ41242.1| BarA-associated response regulator UvrY [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  ++L+ERE   + +   G    +I+E+L LS  TVN+Y      KLD
Sbjct: 133 MALSQFASNSENPFKDLSERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFNKLD 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 ISGDVELTHLAIRHGML 209


>gi|288550286|ref|ZP_05969857.2| putative HTH-type transcriptional regulator YhjB [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315914|gb|EFC54852.1| putative HTH-type transcriptional regulator YhjB [Enterobacter
           cancerogenus ATCC 35316]
          Length = 199

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L  +       L++R+   L+L   G +++EI   L +S  TV A+L +   +LD  NR 
Sbjct: 129 LQPQPQQELSALSDRQHDVLKLLAAGESNKEIGRSLNISAATVKAHLETVFRRLDVKNRT 188

Query: 223 QAIAKAIRF 231
           QA     R 
Sbjct: 189 QAAMIYTRM 197


>gi|209516384|ref|ZP_03265240.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209503146|gb|EEA03146.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 259

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            NL+ R+   ++L   G+T++ IA +LG++  TV  +L      L   NR  AI  A+  
Sbjct: 193 ENLSPRQQDIMRLVHRGWTNKMIARELGVAEGTVKVHLSVIFRALGVHNRSTAI--AVIN 250

Query: 232 GYI 234
           G++
Sbjct: 251 GWL 253


>gi|326330391|ref|ZP_08196700.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|326330396|ref|ZP_08196704.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951671|gb|EGD43703.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951817|gb|EGD43848.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 322

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%)

Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218
                 +   +    LT RE   L+L   G T+ +IA  L LS  TV +++     KL A
Sbjct: 243 RRRATPESVMTTTSGLTSRELGVLRLIATGATNTQIASALVLSESTVKSHVKHILHKLPA 302

Query: 219 VNRIQAIAK 227
            NR +A+ +
Sbjct: 303 ANRAEAVFR 311


>gi|307325178|ref|ZP_07604382.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889324|gb|EFN20306.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 35/82 (42%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
               +              R L+ RE   L+L  +G +++ I   +GLS  TV ++L   
Sbjct: 137 AAARMHRRPPGAPGHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARI 196

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL   +R   +A A+R G I
Sbjct: 197 ARKLGTGDRAGMVAVALRTGII 218


>gi|295835904|ref|ZP_06822837.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|333023773|ref|ZP_08451837.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|295825771|gb|EFG64471.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|332743625|gb|EGJ74066.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           R L+ RE   L+L  +G +++ I   +GLS  TV ++L     KL   +R   +A A+R 
Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215

Query: 232 GYI 234
           G I
Sbjct: 216 GII 218


>gi|239831042|ref|ZP_04679371.1| Monoamine regulon transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823309|gb|EEQ94877.1| Monoamine regulon transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 241

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +   K  R
Sbjct: 173 GELLTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRTEVACKLHR 232

Query: 231 F 231
            
Sbjct: 233 M 233


>gi|218258057|ref|ZP_03474484.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225776|gb|EEC98426.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii
           DSM 18315]
          Length = 202

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           + L+ RE   +     G T+ EIA++L LS HTV  +  +   KL   +       AI  
Sbjct: 133 QTLSAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVN 192

Query: 232 GYI 234
             +
Sbjct: 193 KLV 195


>gi|261406784|ref|YP_003243025.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283247|gb|ACX65218.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 216

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERE 178
           G        FTS+ ++ +    I         +   L    + +   +      NLT RE
Sbjct: 99  GASGYLLKDFTSQKIIASIREAIRGELMLPSKVAAKLAARLRTTGVPQFPVQNYNLTPRE 158

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
               +L  +   + EIA+ L ++  TV  Y+     K+   +R +AI
Sbjct: 159 LQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205


>gi|163754119|ref|ZP_02161242.1| transcriptional regulator, LuxR family protein [Kordia algicida
           OT-1]
 gi|161326333|gb|EDP97659.1| transcriptional regulator, LuxR family protein [Kordia algicida
           OT-1]
          Length = 212

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           +V+   L+  +K  S     T+RE   L+L    +T+ EI+ KL ++  TV  +  +   
Sbjct: 133 KVLNVLLDAVRKPKSKTIQFTKREKDVLRLIVGDHTTSEISAKLNIANSTVETHRRNLIE 192

Query: 215 KLDAVNRIQAIAKAIRFGYI 234
           K    + +  +  A+  GY+
Sbjct: 193 KTGVKSSLGLVRYAVENGYL 212


>gi|53719635|ref|YP_108621.1| putative two component regulatory system response regulator
           [Burkholderia pseudomallei K96243]
 gi|254297922|ref|ZP_04965375.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           406e]
 gi|52210049|emb|CAH36023.1| putative two component regulatory system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|157806813|gb|EDO83983.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           406e]
          Length = 206

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 14/184 (7%)

Query: 65  PNILIETYGDDFLFHFNSGLLP---IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121
              ++    D           P   +I      E        +   +  G      I   
Sbjct: 23  DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAADGLAMLTAIRDGYPSVRVIVLT 82

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-----------FKKRSSA 170
           +         +       +L+    ++        +                   + + A
Sbjct: 83  MLDNPVLMHTMRQAGALAVLSKRGDLDELPRALAAVYQGRPFVGTHAGAAGGGAMRGTDA 142

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
            R L+ RE   ++L   G T  +IA + G S+ TV+ +  +A  KL   + +     A  
Sbjct: 143 PRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATE 202

Query: 231 FGYI 234
            G +
Sbjct: 203 NGLV 206


>gi|330504010|ref|YP_004380879.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328918296|gb|AEB59127.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 203

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            S+   LT R+   L+L  +G  ++ I+ +LGL+  TV  +L +    L    R   ++ 
Sbjct: 137 PSSPSPLTPRQLEILRLLAEGLPNKVISRQLGLAEDTVKTHLKALFETLAVHTRTACVSA 196

Query: 228 AIRFGYI 234
           A + G++
Sbjct: 197 ARQRGWL 203


>gi|302553937|ref|ZP_07306279.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471555|gb|EFL34648.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 204

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           A  LT+RE   L+ A DG T+ E+A  L LS  TV  YL +A  KL   NR +A+  A  
Sbjct: 141 ANPLTDREREVLRAASDGSTNAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARE 200

Query: 231 FGYI 234
            G++
Sbjct: 201 KGWL 204


>gi|256396740|ref|YP_003118304.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362966|gb|ACU76463.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 314

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 15/226 (6%)

Query: 9   KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68
           ++   L  +   L  +         A+  ++           +    + D D        
Sbjct: 104 EQLFGLDAVQSELEQL-----LAGAAVEVLSMVPGSAVPAATLKAAESLDQDMTRRVRSR 158

Query: 69  IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128
           I  +              I +     E   E     SV     ++       P++     
Sbjct: 159 ILYHS-----TVRQDPTTIAYGRWMAEQGSEVRLSPSVTRRLLIVDGKTAVVPIKPNEAS 213

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
            G +      L+     + E        +    +           L+  +   L+L  DG
Sbjct: 214 VGALCVREPGLIDQLTALFELIWTEAVPLGMPAKAESPA-----GLSPTDRHLLRLLADG 268

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            T E  A++LG+S  TV   +     +L A +R +A  +A R G++
Sbjct: 269 LTDEAAAKRLGISARTVRRIMADLMDRLGAESRFEAGVEAARRGWL 314


>gi|171058257|ref|YP_001790606.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775702|gb|ACB33841.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 219

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT R+   L+L   G ++++I+  L ++  T+  ++     +LD  +R Q +  A R G
Sbjct: 155 GLTPRQLDVLRLMALGQSNKQISRALSVAESTIKTHVAVVFRRLDVTSRSQVMVAAARMG 214

Query: 233 Y 233
            
Sbjct: 215 L 215


>gi|83593935|ref|YP_427687.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576849|gb|ABC23400.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 226

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
               +    +LT R+   L L   G ++ EI  +LGL++ TV  ++      LDA NR Q
Sbjct: 156 DFDDNPRLSDLTRRQREVLALMSQGLSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQ 215

Query: 224 AIAKAI 229
           A+  A 
Sbjct: 216 AVLMAR 221


>gi|17545011|ref|NP_518413.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|207727731|ref|YP_002256125.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|17427301|emb|CAD13820.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|206590972|emb|CAQ56584.1| response regulator protein [Ralstonia solanacearum MolK2]
          Length = 210

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
              + L++RE         G +   IAE+L LSV TV+ Y      K+   +       A
Sbjct: 144 PLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYA 203

Query: 229 IRFGYI 234
           I+ G +
Sbjct: 204 IKNGLV 209


>gi|326441134|ref|ZP_08215868.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 219

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TER 177
                   + ++        +   V+ +   A               +   R L   T+R
Sbjct: 98  TADGARGADAWLQEQRIDCHVIQRVLQQLVDANAGPDGAERSPHSSGTLLERGLNRVTQR 157

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           E + L L   G ++++IA  LG+S+H V  ++ +  +KLD+ NR +   K  + G +
Sbjct: 158 ERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGLL 214


>gi|218530213|ref|YP_002421029.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218522516|gb|ACK83101.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 235

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 46/139 (33%)

Query: 95  ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154
                  G+  +R+          A    +    + +V   +    +   V+  A GA  
Sbjct: 75  RIAALREGRPWLRVLAVFRTLDASAMHRLIAAGADAFVGCGTPADEVCASVLALAKGAPP 134

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
                           A  LT RE   L+    G++++E+A +L LSV TV  +  +   
Sbjct: 135 APSAAASSACPSAEDPAIGLTPREAEVLRFLSAGFSNKEVARRLSLSVRTVETHRLNLRR 194

Query: 215 KLDAVNRIQAIAKAIRFGY 233
           K         +  A + G 
Sbjct: 195 KTQTGRLKDLVTLARQLGL 213


>gi|107027364|ref|YP_624875.1| ATP-dependent transcription regulator LuxR [Burkholderia
           cenocepacia AU 1054]
 gi|116693926|ref|YP_839459.1| ATP-dependent transcription regulator LuxR [Burkholderia
           cenocepacia HI2424]
 gi|105896738|gb|ABF79902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia cenocepacia AU 1054]
 gi|116651926|gb|ABK12566.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia cenocepacia HI2424]
          Length = 921

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 13/181 (7%)

Query: 59  LDSGDIPNILIETYGDDFLFHFNSGLLPIIW---------QSIQEETVIESSGQLSVRLE 109
                      E        H         W             +    ES+   +    
Sbjct: 726 ARLLLADARANEAAQRMATVHAVLAARGFDWFAAQAAVLHAIALDHAGDESAALAAFARA 785

Query: 110 GGLLPFAGIAFP-VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE---LFK 165
                  G+    V  G      +    +       V         +             
Sbjct: 786 LEYGQGNGLVRTFVDEGAAAERLLARMQKRADRFPAVGAWYLRDLARAFDAQRASGGAPA 845

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            R  A  NL+ RE   L     G +++EIA  L ++  T+  +L +   KL+  +RIQA+
Sbjct: 846 TRPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRIQAV 905

Query: 226 A 226
            
Sbjct: 906 R 906


>gi|325927296|ref|ZP_08188550.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542297|gb|EGD13785.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 200

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 5/98 (5%)

Query: 140 MLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
               E +++A    ++   VI   L L       A  L+ERE + L+LAG+G ++ EIA+
Sbjct: 105 DAPAEQLVDALRQVHRGGRVIDPQLALDAWVE--ADPLSERERTVLRLAGEGRSASEIAQ 162

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +L LS  TV  YL     KL   NRI+A   A + G++
Sbjct: 163 QLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|308178436|ref|YP_003917842.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745899|emb|CBT76871.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A R L+ER+ S  +L   G T+ +IA    +S  +V  +L     +LD  NR+Q    A 
Sbjct: 149 AVRKLSERDRSLARLVAAGLTNSQIARIAHISEGSVKLHLARIMEELDVTNRVQLAVIAT 208

Query: 230 RFGYI 234
             G +
Sbjct: 209 ESGLV 213


>gi|145580560|pdb|2UV0|E Chain E, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
           Bound To Its Autoinducer
 gi|145580561|pdb|2UV0|F Chain F, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
           Bound To Its Autoinducer
 gi|145580562|pdb|2UV0|G Chain G, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
           Bound To Its Autoinducer
 gi|145580563|pdb|2UV0|H Chain H, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
           Bound To Its Autoinducer
          Length = 175

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 11/174 (6%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           + +  L  ++SS   E S  L    + +                 +  +    + NY   
Sbjct: 5   LVDGFLELERSSGKLEWSAILQKXASDLGFSKILF---GLLPKDSQDYENAFIVGNYPAA 61

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
             +  +       D  + H    +LPI W   +                       G+  
Sbjct: 62  WREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGLVYGLTX 118

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174
           P+     + G +  +     +  E   EA+     V+     L      +   L
Sbjct: 119 PLHGARGELGALSLS-----VEAENRAEANRFXESVLPTLWXLKDYALQSGAGL 167


>gi|329944915|ref|ZP_08292942.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529726|gb|EGF56622.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 244

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G T++EI ++  LS+ TV  ++     K    +R+Q +  A+R G
Sbjct: 174 ALTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTGCRDRVQLVLLALRGG 233

Query: 233 YI 234
            +
Sbjct: 234 VV 235


>gi|300692737|ref|YP_003753732.1| response regulator, LuxR family [Ralstonia solanacearum PSI07]
 gi|299079797|emb|CBJ52474.1| response regulator, LuxR family [Ralstonia solanacearum PSI07]
          Length = 210

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
              + L++RE         G +   IAE+L LSV TV+ Y      K+   +       A
Sbjct: 144 PLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYA 203

Query: 229 IRFGYI 234
           I+ G +
Sbjct: 204 IKNGLV 209


>gi|188584049|ref|YP_001927494.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347547|gb|ACB82959.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 263

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 131 YVIFTSEFLMLANEVIIEAHGACYQV-----ITDFLELFKKRSSAARNLTERETSCLQLA 185
             +  ++  +L    +     A   V     +     L +   ++  +L+ RE + L+  
Sbjct: 115 LEVVIADCAVLPMSFLGRLCLAAEPVRAPGPVAALTGLQRADGTSLSSLSSREVNILEGL 174

Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             G +++ IA  L ++  TV  ++ +   K+   NR QA   A+  G +
Sbjct: 175 ALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGIV 223


>gi|89900331|ref|YP_522802.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345068|gb|ABD69271.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 230

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 2/115 (1%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAARNLTERET 179
           +R+G             L+ A +  +    H               K       L+ RE 
Sbjct: 93  LRMGASGYVLKGSAVSDLLSAVDAAVRGKKHLGAEVADLALQVFTLKDEDPLSTLSPREQ 152

Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             + +   G +S +I  +L LS  TV  Y      KL   +    +  A+R   I
Sbjct: 153 QIIIMVVKGASSSQIGTQLHLSPKTVATYRSRLMAKLGVRDVPGLVRLAVRHKLI 207


>gi|311694458|gb|ADP97331.1| two component transcriptional regulator, LuxR family [marine
           bacterium HP15]
          Length = 220

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%)

Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208
           A     + +           S    L+ERE     +  D    ++I++KL LS  TVN+Y
Sbjct: 130 AQKMALKQLGGGDRDEDGELSLFDRLSEREMQIAMMVVDCQKVQDISDKLCLSPKTVNSY 189

Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234
                 KL+  + ++    A+R G +
Sbjct: 190 RYRIFEKLEISSDVELALMAVRLGLL 215


>gi|237880801|gb|ACR33059.1| response regulator [Actinoplanes garbadinensis]
          Length = 220

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
              T RE     L   G  + EIA +L L+  TV  ++G    KL   +R+  +  A R 
Sbjct: 157 DTFTARERDVFDLIVAGANNAEIAARLHLAEVTVKTHVGRVLAKLGVRDRLNVVVWAYRN 216

Query: 232 G 232
           G
Sbjct: 217 G 217


>gi|229171880|ref|ZP_04299449.1| hypothetical protein bcere0006_9970 [Bacillus cereus MM3]
 gi|228611590|gb|EEK68843.1| hypothetical protein bcere0006_9970 [Bacillus cereus MM3]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +       Q     +   +K +     LT+RE   L     G T++ IA  L LS  ++ 
Sbjct: 129 LFRQLRIQQFSAKSVLQSEKTNELPITLTQREREVLIFVQQGMTNKNIAVTLNLSQRSIE 188

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L     KL   +R++A+ KA   G +
Sbjct: 189 YTLTELFNKLRVSSRVEAVEKAKSLGIL 216


>gi|182437087|ref|YP_001824806.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465603|dbj|BAG20123.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187
               V     +L       + A    ++       L          LTERE   L   G 
Sbjct: 111 GVRAVGAGGAYLSPRVAGRVIAGMRAHRAAHPHRSLA--------RLTEREREVLAGLGA 162

Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           G ++ EIA +L L   TV A++ +   KL A NR++A   A     +
Sbjct: 163 GLSNAEIASRLHLVEGTVKAHVSAVLAKLGARNRVEAAIAAYEADLV 209


>gi|149926201|ref|ZP_01914463.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825019|gb|EDM84231.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 228

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT RE   L L   G    EIAE L +S  T++AY      KL+  + +Q +  AI  G
Sbjct: 166 QLTRRERQVLTLIAQGRPRREIAELLKVSPRTIDAYRARLLQKLNLDSSVQLVKYAISAG 225

Query: 233 Y 233
            
Sbjct: 226 M 226


>gi|170726983|ref|YP_001761009.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169812330|gb|ACA86914.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 213

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQ-----------VITDFLE 162
           + F V          I  +           E +IE      Q           ++   L 
Sbjct: 81  VIFTVSDSESDVLQAIKFNTDGYLLKDSEPEELIEKINLAIQGEFVISAPLTKILARSLR 140

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              K SS   NLT+RE   L+L   G ++++IA  LG++  TV  ++ +   KL   +R+
Sbjct: 141 PESKASSPLENLTQRELQNLKLIASGKSNKDIANTLGIAETTVKVHVKNLLKKLGLKSRV 200

Query: 223 QAIAKAIRFGY 233
           +A   A+    
Sbjct: 201 EAAVWAVEHKI 211


>gi|146306971|ref|YP_001187436.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145575172|gb|ABP84704.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 221

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           + LT ++   L+    G ++++IA  L ++  TV A++ +   KL+  NR+QAI  A
Sbjct: 154 QALTRKQLLVLERMTKGESNKQIAYSLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|49477103|ref|YP_035372.1| two-component response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328659|gb|AAT59305.1| two-component response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 219

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
           +       Q     +   +K +     LT+RE   L     G T++ IA  L LS  ++ 
Sbjct: 127 LFRQLRIQQFSAKSVLQSEKTNELPITLTQREREVLIFVQQGMTNKNIAVTLNLSQRSIE 186

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
             L     KL   +R++A+ KA   G +
Sbjct: 187 YTLTELFNKLRVSSRVEAVEKAKSLGIL 214


>gi|332669837|ref|YP_004452845.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338875|gb|AEE45458.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 222

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              ++  +    LTERE    +  G G ++ EIA  L L V TV  ++G+   KLDA NR
Sbjct: 148 RPRERARALLATLTEREREVAEAVGAGMSNAEIARTLHLGVATVKTHVGNVLAKLDATNR 207

Query: 222 IQAIAKAIRFG 232
           +Q        G
Sbjct: 208 VQIARWVHEAG 218


>gi|332292518|ref|YP_004431127.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170604|gb|AEE19859.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 212

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           + L+ RE   L L  +G  ++EIA +L ++  TV+ Y      KL+A N  + I  A 
Sbjct: 148 KKLSSREIEVLNLLSNGKRNKEIAAELDINEKTVSTYKMRLLKKLEAQNVAELIKHAR 205


>gi|320534446|ref|ZP_08034923.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133339|gb|EFW25810.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 244

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+RE   L L   G T++EI ++  LS+ TV  ++     K    +R+Q +  A+R G
Sbjct: 174 GLTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTGCRDRVQLVLLALRGG 233

Query: 233 YI 234
            +
Sbjct: 234 VV 235


>gi|296876462|ref|ZP_06900513.1| LuxR family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432455|gb|EFH18251.1| LuxR family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
          Length = 323

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           LTERE   L L  +   ++EIA++L LSV TV  ++ +  +KL+   R Q 
Sbjct: 259 LTEREKEILPLLLEHKNNQEIADQLFLSVGTVKTHVHNIFIKLEITKRNQL 309


>gi|326777702|ref|ZP_08236967.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326658035|gb|EGE42881.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 226

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
               G     +         RS A   LTERE   L   G G ++ EIA +L L   TV 
Sbjct: 136 ARVAGRVIAGMRAHRAAHPHRSLA--RLTEREREVLAGLGAGLSNAEIASRLHLVEGTVK 193

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           A++ +   KL A NR++A   A     +
Sbjct: 194 AHVSAVLAKLGARNRVEAAIAAYEADLV 221


>gi|229817720|ref|ZP_04448002.1| hypothetical protein BIFANG_02992 [Bifidobacterium angulatum DSM
           20098]
 gi|229785509|gb|EEP21623.1| hypothetical protein BIFANG_02992 [Bifidobacterium angulatum DSM
           20098]
          Length = 225

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%)

Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
             + ++A   L+ERE    +L   G  + +IA +L LS  TV   +     KL   NR Q
Sbjct: 156 DGELANALATLSERERDVARLVAQGLDNRQIAAQLFLSEGTVRNRISDILDKLALTNRTQ 215

Query: 224 AIA 226
              
Sbjct: 216 LAI 218


>gi|254425747|ref|ZP_05039464.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188170|gb|EDX83135.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 212

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
           +ERE   L+  G G  + EIA  L L+  T+  +L +   +LD  +R QA   A + 
Sbjct: 153 SERELDILKQLGQGKRNREIAANLNLTEGTIKNHLTNIFCQLDVRDRTQAALWAHQH 209


>gi|197295540|ref|YP_002154081.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195945019|emb|CAR57642.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   ++    G  +++IA ++GLS  TV  + G A  K+ A    + +  A   G 
Sbjct: 150 LTPREREVMKYVVSGLLNKQIAAEMGLSEITVKIHRGHAMRKMGARTLPEFVLGAQALGL 209


>gi|111020359|ref|YP_703331.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110819889|gb|ABG95173.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1079

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%)

Query: 151  GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210
             A    + + +      +  +   T+RE     L  +G T++EIA +L +S  T   ++ 
Sbjct: 995  AAVAYALGEQVSPSPTSAGPSPTPTKREREVAALIAEGLTNKEIAARLVISPRTAQGHVE 1054

Query: 211  SATVKLDAVNRIQAIAKAIR 230
                KL   +R Q  A  + 
Sbjct: 1055 HLLTKLGFNSRAQIAAWVVE 1074


>gi|134292666|ref|YP_001116402.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134135823|gb|ABO56937.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 214

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LT RE   ++    G  +++IA ++GLS  TV  + G A  K+ A    + +  A   G 
Sbjct: 150 LTPREREVMKYVVSGLLNKQIAAEMGLSEITVKIHRGHAMRKMGARTLPEFVLGAQALGL 209


>gi|329849532|ref|ZP_08264378.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328841443|gb|EGF91013.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 236

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLML-ANEVIIEAHGACYQVITDFLELFK-----KR 167
             A +   +R G         TSE L+      +   +    +     L++         
Sbjct: 102 DRASVLKTLRAGADGYVLKDATSEHLVSYVRSALAGVNPISSRAARHLLKISDEGEAQPV 161

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
           +S+   L  RE   L+    G + + +A  + LS HTV  Y  +   KL   +R  A+ +
Sbjct: 162 TSSHPPLRPREKEMLEHIAQGLSQKAVARLMNLSPHTVAEYTQNIYRKLSVKSRGAAVFE 221

Query: 228 AIRFGYI 234
           AI+   I
Sbjct: 222 AIQHKLI 228


>gi|302537555|ref|ZP_07289897.1| two-component system response regulator [Streptomyces sp. C]
 gi|302446450|gb|EFL18266.1| two-component system response regulator [Streptomyces sp. C]
          Length = 220

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%)

Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191
           V  T   + L         GA    +              R L+ RE   L+L  +G ++
Sbjct: 117 VTGTRTNIGLPTRPGAAPIGAAAARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSN 176

Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           + I   +GLS  TV ++L     KL   +R   +A A+R G I
Sbjct: 177 KAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|145297176|ref|YP_001140017.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142849948|gb|ABO88269.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 207

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           +L++RE         G +++EIA  + LS  T++ Y      KL   N ++ I  A R
Sbjct: 146 SLSDREMRVFLSLCKGCSNKEIANNMLLSEKTISTYKSRVMRKLQVNNMVELIDLAKR 203


>gi|313682018|ref|YP_004059756.1| transcriptional regulator, luxr family [Sulfuricurvum kujiense DSM
           16994]
 gi|313154878|gb|ADR33556.1| transcriptional regulator, LuxR family [Sulfuricurvum kujiense DSM
           16994]
          Length = 206

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
             L+ERE    +    G ++ +IA+ + ++  TV A+L S   KL   +R+     
Sbjct: 144 EKLSEREQEIGRYVAQGLSNYQIAQTIEITERTVKAHLLSCYKKLGLNDRVSLALW 199


>gi|309792094|ref|ZP_07686568.1| two-component system response regulator [Oscillochloris trichoides
           DG6]
 gi|308225901|gb|EFO79655.1| two-component system response regulator [Oscillochloris trichoides
           DG6]
          Length = 215

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           T RE   L+L     +++E+AE + ++  TV +++ S   KL   NR+QA+  A+R G I
Sbjct: 153 TPRELDVLRLMATSRSNKEMAEAMTVTEETVRSHIKSILNKLRQPNRMQAVLMALRLGII 212


>gi|289642935|ref|ZP_06475069.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Frankia symbiont of Datisca glomerata]
 gi|289507240|gb|EFD28205.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Frankia symbiont of Datisca glomerata]
          Length = 1188

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 35/75 (46%)

Query: 160  FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219
             +E      +A   L+ RE + L       T+ EIA ++ +SV+TV  +L S   KLD  
Sbjct: 1114 AVEPAGPLPAAFEPLSGREQAVLSYLPTMLTTAEIASEMFVSVNTVKTHLKSIYRKLDVA 1173

Query: 220  NRIQAIAKAIRFGYI 234
             R  A+ +A     +
Sbjct: 1174 RRRDAVHRARALHLL 1188


>gi|241661775|ref|YP_002980135.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|240863802|gb|ACS61463.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 210

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
              + L++RE         G +   IAE+L LSV TV+ Y      K+   +       A
Sbjct: 144 PLHQTLSKREFQIFCKLARGQSVSVIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYA 203

Query: 229 IRFGYI 234
           I+ G +
Sbjct: 204 IKNGLV 209


>gi|89901852|ref|YP_524323.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89346589|gb|ABD70792.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 201

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 11/156 (7%)

Query: 88  IWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG--FHKNGYVIFTSEFLMLA 142
            W+    +       S  +L   L         I           +  ++    +F+   
Sbjct: 46  DWRGCVVVDIRMPGMSGLELQRCLRERGPSLPVIVITAHGDVAAARQAFLADAVDFIEKP 105

Query: 143 NE--VIIEAHGACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEK 197
            +   ++ A                + +        L+ RE   + L   G  +  IAE 
Sbjct: 106 FDGKQLLGAIENALSGFRALDIAQARAAFTKPTLGQLSIREREVMTLMVKGLHNRRIAET 165

Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           LG+S  TV  +      KL A N +  +   +  G 
Sbjct: 166 LGISPRTVEVHKARVMEKLGAQNIVDLVRL-VDKGL 200


>gi|27366323|ref|NP_761851.1| response regulator [Vibrio vulnificus CMCP6]
 gi|37679417|ref|NP_934026.1| response regulator [Vibrio vulnificus YJ016]
 gi|320156831|ref|YP_004189210.1| barA-associated response regulator UvrY (GacA SirA) [Vibrio
           vulnificus MO6-24/O]
 gi|27362524|gb|AAO11378.1| BarA-associated response regulator UvrY (= GacA = SirA) [Vibrio
           vulnificus CMCP6]
 gi|37198160|dbj|BAC93997.1| response regulator [Vibrio vulnificus YJ016]
 gi|319932143|gb|ADV87007.1| barA-associated response regulator UvrY (GacA SirA) [Vibrio
           vulnificus MO6-24/O]
          Length = 214

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
               +      +  ++L+ERE   + +   G    +I+E+L LS  TVN+Y      KL 
Sbjct: 133 MALSQFSPASENPFKDLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLS 192

Query: 218 AVNRIQAIAKAIRFGYI 234
               ++    AIR G +
Sbjct: 193 INGDVELTHLAIRHGML 209


>gi|332140807|ref|YP_004426545.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550829|gb|AEA97547.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 222

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           ++  + LT  +   L++  DG  +++IA +L +S  TV  ++ +   KL  +NR +A
Sbjct: 155 TARLKQLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVLRKLGVINRTKA 211


>gi|254561165|ref|YP_003068260.1| response regulator [Methylobacterium extorquens DM4]
 gi|254268443|emb|CAX24400.1| putative Response regulator, CheY-like and LuxR domain
           [Methylobacterium extorquens DM4]
          Length = 235

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%)

Query: 94  EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153
                   G+  +R+          A    +    + +V   +    +   V+  A GA 
Sbjct: 74  ARIAALREGRPWLRVLAVFRTLDAPAMHRLIAAGADAFVGCGTPADEVCASVLALAKGAP 133

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
                               LT RE   L+    G++++E+A +L LSV TV  +  +  
Sbjct: 134 PVPSAAASSACPPTEDPTIGLTPREAEVLRFLSAGFSNKEVARRLSLSVRTVETHRLNLR 193

Query: 214 VKLDAVNRIQAIAKAIRFGY 233
            K         +  A + G 
Sbjct: 194 RKTQTGRLKDLVTLARQLGL 213


>gi|288940382|ref|YP_003442622.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288895754|gb|ADC61590.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 208

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 108 LEGGLLPFAGIAFPVRL--GFHKNGYVIFTSEFLMLAN------EVIIEAHGACYQVITD 159
                L   G   PV L  G       +   +   +        +  +            
Sbjct: 67  ELQAYLAREGFRIPVILITGHGDVAMAVRAMKAGAMDFIEKPFHDEDLLRSLRNALDHDQ 126

Query: 160 FLELFK----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215
                +      +     LT RE   + +  DG +++EIA  LG+S  TV A+      K
Sbjct: 127 KTRANRLARADIAMRLAELTPREHEVMAMVTDGKSNKEIAAALGVSAKTVEAHRARVMEK 186

Query: 216 LDAVNRIQAIAKAI 229
           + A +  + +  A+
Sbjct: 187 MRAESLAELVRMAL 200


>gi|218675798|ref|YP_002394617.1| Transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
 gi|218324066|emb|CAV25193.1| Transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 260

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%)

Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
            + S   + LT RE+  L L   G   + IA  L +S+ TV  ++     K DA ++ Q 
Sbjct: 172 PRISKLKKRLTSRESEVLFLLLFGKKPQYIASTLNISIKTVEGHVARLKQKFDARSKSQL 231

Query: 225 IAKAIRFGY 233
           I  A+  G 
Sbjct: 232 IEYALDSGL 240


>gi|170699404|ref|ZP_02890449.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135660|gb|EDT03943.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 227

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%)

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
           L      A   LT R+   L+L  +G ++++I   L ++  T+  +L +   ++   NR 
Sbjct: 141 LPAGDDRAFERLTPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVSNRT 200

Query: 223 QAIAKAIRF 231
           +A     R 
Sbjct: 201 EAALWLARH 209


>gi|153828389|ref|ZP_01981056.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|148876098|gb|EDL74233.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
          Length = 267

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 52/230 (22%), Gaps = 27/230 (11%)

Query: 19  PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78
             L  +   I   +F    I           L   L                   D F  
Sbjct: 27  SHLVAVLRCI--ADFDCAVILGYRPNKHPIYLYDSLSTQRELLFQRYLTHAYLD-DPFYS 83

Query: 79  HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-TSE 137
                    ++       +         +          ++  V L   +   V     +
Sbjct: 84  ALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERAIVVYLGCFK 143

Query: 138 FLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSA---------------ARNL 174
                 E I                      L L +    +               A+ L
Sbjct: 144 PRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAESAQPSQELRIWVEQAIQSFGAQRL 203

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224
           + RE     L   G  S+EIAE L +S  TV  +     V+L   +  + 
Sbjct: 204 SPREQEITALLIQGLDSQEIAEALAISHGTVKNHRKRIYVQLHVSSLSEL 253


>gi|16263297|ref|NP_436090.1| Response regulator [Sinorhizobium meliloti 1021]
 gi|307304384|ref|ZP_07584135.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307318091|ref|ZP_07597527.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|14523975|gb|AAK65502.1| Response regulator [Sinorhizobium meliloti 1021]
 gi|306896132|gb|EFN26882.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306902586|gb|EFN33180.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 227

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%)

Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226
           R      LT R+   LQL   G++++EIA KL L   TV  ++ +    L   NR +A A
Sbjct: 155 RHRTIEFLTPRQREVLQLLVQGFSNKEIARKLKLGEGTVKIHMAALFRSLRVRNRQEAAA 214

Query: 227 KAIRF 231
              R 
Sbjct: 215 AGARL 219


>gi|328947071|ref|YP_004364408.1| LuxR family transcriptional regulator [Treponema succinifaciens DSM
           2489]
 gi|328447395|gb|AEB13111.1| two component transcriptional regulator, LuxR family [Treponema
           succinifaciens DSM 2489]
          Length = 232

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
            L+ RE    +L     T+++IA++L ++  TV  ++     K    +R +
Sbjct: 174 GLSSREIEIAELLLKNQTNKQIAKELFIATSTVATHIQHIYEKFGVKSRSE 224


>gi|253987570|ref|YP_003038926.1| LuxR family two component transcriptional regulator [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779020|emb|CAQ82180.1| two component transcriptional regulator, luxr family [Photorhabdus
           asymbiotica]
          Length = 209

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 140 MLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196
            +  +++IE             +     ++       L++RE+  +++  +G TS++IA+
Sbjct: 108 PIDADLLIETVSNALSFHQKIFKQHQVYEQLKVKFSQLSDRESEVMKIILEGKTSKQIAQ 167

Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +L LS  T+  +  +   KLD  +  Q +
Sbjct: 168 QLALSPRTIEVHRANIFHKLDIHSLPQLV 196


>gi|209515667|ref|ZP_03264531.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209503903|gb|EEA03895.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 489

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 34/82 (41%)

Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212
              V         +    A +L+ RET  L+    G +++EIA +L LS  TV  ++ S 
Sbjct: 408 ALIVSGPTARGRTRSRQQAASLSARETDVLRAISLGASNKEIARELTLSPSTVRTHVESV 467

Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234
             KL    R  A  K    G +
Sbjct: 468 FRKLGCSTRAAATLKGSTMGLL 489


>gi|170704032|ref|ZP_02894676.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria IOP40-10]
 gi|170131061|gb|EDS99744.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria IOP40-10]
          Length = 70

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
            +  LT +E + L+L     +++EIA  L +   TV  +L +   KLDA +R   + +A+
Sbjct: 2   PSVVLTPKERAILELLARSLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHVVRRAL 61

Query: 230 RFGYI 234
             G +
Sbjct: 62  VLGLL 66


>gi|186473908|ref|YP_001861250.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184196240|gb|ACC74204.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 253

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213
              I     L   +     NL+ R+   ++L   G+T++ IA  LG++  T+  +L    
Sbjct: 169 AAPIVRVEALQPHQQHLLENLSPRQQEIMRLVHRGWTNKMIARDLGVAEGTIKVHLSVIF 228

Query: 214 VKLDAVNRIQAIAKAIRFGYI 234
             L   NR  A A A+  G++
Sbjct: 229 RALGVHNR--ATAIAVINGWL 247


>gi|329901490|ref|ZP_08272828.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549098|gb|EGF33698.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 210

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178
           +R G          +  L+ A + I+  H      + + L +    +        L+ RE
Sbjct: 94  LRSGASGYVQKEALATELVNAIQTIMRGHKYISYAVAELLTMDPDTNADKPLHETLSARE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                    G    +IA++L LSV TV+ Y      K++  +    I  AI+   I
Sbjct: 154 YEIFYKLSQGEGVTKIADELCLSVKTVSTYRARVLQKMNMTSNADIIYYAIKQNLI 209


>gi|196229471|ref|ZP_03128336.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226703|gb|EDY21208.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 225

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA + LT+RE    QL G G T+ EIAE L L + TV+ Y      KL   N  Q    A
Sbjct: 151 SAMKRLTDRELEVFQLIGAGKTTREIAEILNLGMTTVDTYRTRIKEKLGLRNGTQLQHYA 210

Query: 229 ---IRFGY 233
               + G 
Sbjct: 211 SNCAQQGL 218


>gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133739595|emb|CAL62646.1| Response regulator receiver, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 210

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTERE 178
           +R G          +E L+ A + I+  H      + + L      +        L++RE
Sbjct: 94  LRSGASGYVQKEALAEELVTAIQTILRGHKYISHTVAELLTAEVDPNADKPLHETLSKRE 153

Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
                    G+   +IA++L LSV TV+ Y      K++  N    I  AI+   I
Sbjct: 154 YEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNLI 209


>gi|329945473|ref|ZP_08293217.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528963|gb|EGF55901.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 221

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124
            +       D  L   +      +W + Q       +  L +         A        
Sbjct: 46  YDAARSLRPDVVLMDLHMPGTDGVWATAQIAADCPDTKVLVLTAFDTDAMVAAAL----- 100

Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177
                G+++  S   ++   V   A G          +++   +E   +R +    +T+R
Sbjct: 101 RAGATGFLLKDSAPEIIFRAVHAAADGQRAFSGSVLDRLVEAAVEATPQRRAFPETVTDR 160

Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIAKA 228
           E     L   G  + EIAE+L +   TV  ++ +   K    NR+Q A+A A
Sbjct: 161 ERQVALLVAQGLGNSEIAEELVVGASTVKTHVSALLDKFGVSNRVQLAVAVA 212


>gi|288923030|ref|ZP_06417184.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Frankia sp. EUN1f]
 gi|288345613|gb|EFC79988.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Frankia sp. EUN1f]
          Length = 1343

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%)

Query: 158  TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
                      + +A  L+ERE + L       T+ EIA ++ +SV+TV  +L S   KLD
Sbjct: 1267 DPRRAARVGSAGSADLLSERELAVLSYLPTMLTTAEIAAEMFVSVNTVKTHLKSIYRKLD 1326

Query: 218  AVNRIQAIAKAIRFGYI 234
               R  A+  A     +
Sbjct: 1327 VARRRDAVHCARALHLL 1343


>gi|260221013|emb|CBA29154.1| hypothetical protein Csp_A10720 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 75

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
            LT+R+   L+   DG +++EI   L +S  TV  ++ +     D  NR QA+  A R G
Sbjct: 9   PLTQRQELVLRELLDGRSNKEIGTTLNVSEETVKTHVAAILRHFDVQNRTQAVVAAARSG 68

Query: 233 Y 233
           Y
Sbjct: 69  Y 69


>gi|260174181|ref|ZP_05760593.1| transcriptional regulator [Bacteroides sp. D2]
 gi|315922447|ref|ZP_07918687.1| transcriptional regulator [Bacteroides sp. D2]
 gi|313696322|gb|EFS33157.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 257

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233
           L+ERE   L+    G +S+EIA  L +SV+TVN +  +   KL   N I+A   A     
Sbjct: 197 LSEREKEILRCIRKGLSSKEIATTLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 256

Query: 234 I 234
           +
Sbjct: 257 L 257


>gi|256851763|ref|ZP_05557151.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260661520|ref|ZP_05862432.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|282933593|ref|ZP_06338963.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
 gi|297205385|ref|ZP_06922781.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615721|gb|EEU20910.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260547577|gb|EEX23555.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|281302336|gb|EFA94568.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
 gi|297149963|gb|EFH30260.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 223

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232
           ++ E   +Q  G G +++EI+ KL LS  TV  Y+ S   +LD  +R Q    A++ G
Sbjct: 158 SKNEWRVIQQVGLGLSNKEISAKLYLSEGTVRNYISSILSQLDLRDRTQLAIWAVQTG 215


>gi|221197308|ref|ZP_03570355.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2M]
 gi|221203981|ref|ZP_03576999.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2]
 gi|221176147|gb|EEE08576.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2]
 gi|221183862|gb|EEE16262.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2M]
          Length = 210

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 12/123 (9%)

Query: 116 AGIAFPVR--LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--- 170
            G   PV    G       +   +   +             + +   L L ++R +A   
Sbjct: 74  RGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAADRR 133

Query: 171 -------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223
                     LT RE   L+   DG  S++IA  L +SV TV+ +  S   KL A +   
Sbjct: 134 HRELRERLAALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAA 193

Query: 224 AIA 226
            + 
Sbjct: 194 LVR 196


>gi|196233033|ref|ZP_03131881.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222840|gb|EDY17362.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 212

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 8/160 (5%)

Query: 82  SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE---- 137
               P     +       S  +   R+ G       I              +        
Sbjct: 49  RQHRP-DVTLMDVRMPGASGIEALQRIRGEFPDARVIMLTTYDLDEDVFRALEAGAVGYL 107

Query: 138 FLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194
              + +  +  A    +   + +   LE   K  +    L+ RE   L L   G+++ EI
Sbjct: 108 LKSVRHAELFAAVRKVHAGERCVPQSLETRCKNGALRSRLSPREVETLDLLARGFSNREI 167

Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
              LG++  T  A++ +  VKL+A +R +A+  A + G +
Sbjct: 168 GSALGVTERTAKAHVQAILVKLEAADRAEAVDAAYKRGLL 207


>gi|182435952|ref|YP_001823671.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464468|dbj|BAG18988.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 220

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227
            +    LT RE   L   G+G ++ EIA +L ++  TV  ++     KL+  +R+QA   
Sbjct: 151 PAVLDALTRREREVLGCLGEGLSNAEIALRLAMAEATVKTHVSRVLGKLELRSRVQAAVL 210

Query: 228 AIRFGY 233
           A   G 
Sbjct: 211 AQELGI 216


>gi|167622115|ref|YP_001672409.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167352137|gb|ABZ74750.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 213

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 118 IAFPVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGAC-----------YQVITDFLE 162
           I F V          I  +           E +IE                 Q++   L 
Sbjct: 81  IIFTVSDNESDVVQAIKFNTDGYLLKDSEPEELIEKIHLALQGEFVISSPLTQILAQSLR 140

Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222
              K+ S    LT+RE   ++L   G +++EIA KLG++  TV  ++ +   KL   +R+
Sbjct: 141 SGGKKVSQLEELTQRELQIVKLIASGKSNKEIANKLGITDSTVKVHVKNLLKKLTLKSRV 200

Query: 223 QAIAKAIRFGY 233
           + +  A+    
Sbjct: 201 EVVLWAVENKI 211


>gi|153007612|ref|YP_001368827.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559500|gb|ABS12998.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 241

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
              LT RE   +     G +++ IA +LG+S  TV A++ +   K+ A NR +   K  R
Sbjct: 173 GELLTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRTEVACKLHR 232

Query: 231 F 231
            
Sbjct: 233 M 233


>gi|146343765|ref|YP_001208813.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146196571|emb|CAL80598.1| putative Transcriptional regulatory protein, luxR family
           [Bradyrhizobium sp. ORS278]
          Length = 199

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +   ++++LT RE   L+L  +G++++E A ++G+S  T  ++   A  KL A N  + +
Sbjct: 132 RSGGSSKSLTPREREVLKLISEGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELV 191

Query: 226 AKAI 229
             A+
Sbjct: 192 RAAL 195


>gi|91775168|ref|YP_544924.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91709155|gb|ABE49083.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 213

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 47/148 (31%), Gaps = 19/148 (12%)

Query: 103 QLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEFLMLANEVIIEAHG-- 151
           +   R+         I F +          LG     YV  +     L   V   A G  
Sbjct: 67  EALRRIIARYPQARVIIFSMHENAAFASQALGAGARAYVAKSGAADDLVQAVREVAQGKG 126

Query: 152 -----ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206
                   Q+    L          R L+ RE    +L   G   EEI+  L +S  TV 
Sbjct: 127 YLSPGIAQQIALQTLSGSDD---PTRLLSAREFEVFRLLAAGKGVEEISTILKISQKTVA 183

Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234
            Y      KL   + I+ +  AI+ G I
Sbjct: 184 NYQTLLKQKLGITSPIELVRLAIKHGVI 211


>gi|297543943|ref|YP_003676245.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841718|gb|ADH60234.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 257

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLT 175
            IA P  +     GY+  +     +A+E++       Y++  ++  E+  +       LT
Sbjct: 138 CIATPFHIDNQIVGYLDISIIEHNMADEMMGFIDLLVYKIANEYKREMDLESQEDLEKLT 197

Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           +++   ++    GYT   I+ +LGL   TV  +      KL   N  QAIAKAIR   I
Sbjct: 198 DKQIEIIKKCAKGYTELAISMELGLKPATVKYHKKEIIKKLRVKNFQQAIAKAIRLNLI 256


>gi|282600216|ref|ZP_05973470.2| putative two-component, nitrogen fixation regulatory protein FixJ
           [Providencia rustigianii DSM 4541]
 gi|282566315|gb|EFB71850.1| putative two-component, nitrogen fixation regulatory protein FixJ
           [Providencia rustigianii DSM 4541]
          Length = 238

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             L+ RE   + +  DG TS E AEKL LS  TV  +  +   KL   +  Q I
Sbjct: 172 DRLSAREREIMDMILDGNTSRETAEKLSLSPRTVEVHRSNIYTKLGIKSLPQLI 225


>gi|212711337|ref|ZP_03319465.1| hypothetical protein PROVALCAL_02409 [Providencia alcalifaciens DSM
           30120]
 gi|212686066|gb|EEB45594.1| hypothetical protein PROVALCAL_02409 [Providencia alcalifaciens DSM
           30120]
          Length = 209

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
             L+ RE   + +  DG TS E AEKL LS  TV  +  +   KL   +  Q I
Sbjct: 143 DRLSAREREIMDMILDGNTSRETAEKLSLSPRTVEVHRSNIYTKLGIKSLPQLI 196


>gi|319795269|ref|YP_004156909.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597732|gb|ADU38798.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 228

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%)

Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
           +  +    LT RE+  L   G G +S++IA  LGLSV TV A+  S   +L    + + I
Sbjct: 156 RNQAPRPLLTPRESEILTALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELI 215

Query: 226 AKAIRF 231
             A+  
Sbjct: 216 KYAVEH 221


>gi|256422989|ref|YP_003123642.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256037897|gb|ACU61441.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 220

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229
           A   L++ E   +Q+  +G +++EIA+ L +S+ TV  +  + + KL+       I  AI
Sbjct: 150 AHHKLSKTEFRVMQMIAEGMSTKEIAQSLNISIKTVENHRHNISKKLNLTGHNSLIKYAI 209

Query: 230 RF 231
           + 
Sbjct: 210 KN 211


>gi|227540526|ref|ZP_03970575.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239608|gb|EEI89623.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
          Length = 209

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%)

Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
             +T RE   LQ A  G TS EIA+ L +S HTV ++  +   K    N    I  A+ +
Sbjct: 145 PKITRREKEILQEAAKGLTSTEIADVLFISSHTVESHRKNLIEKFKVKNIASVIGLALEY 204

Query: 232 GYI 234
           G I
Sbjct: 205 GLI 207


>gi|254436019|ref|ZP_05049526.1| Sigma-70, region 4 family [Nitrosococcus oceani AFC27]
 gi|207089130|gb|EDZ66402.1| Sigma-70, region 4 family [Nitrosococcus oceani AFC27]
          Length = 184

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%)

Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214
           Q + +  +  ++       LT RE   + L   G  ++ IA  L +S+ TV  + G    
Sbjct: 102 QYLREEQKEREEIIIRMMRLTPREREVMALVLKGQPNKLIASDLDISIKTVEIHRGQVMK 161

Query: 215 KLDAVNRIQAIAKAI 229
           KL    +   I  A+
Sbjct: 162 KLQVRTQADLIHLAL 176


>gi|217978174|ref|YP_002362321.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503550|gb|ACK50959.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 223

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228
           SA  +L+ERET  L+L   G++ + +A +L +SV +V  Y   A  KL   +R+Q +  A
Sbjct: 155 SAIADLSERETEVLRLTAGGHSHKAVAAELRISVKSVETYKARAMEKLGFDSRVQLVRYA 214

Query: 229 IRFGYI 234
              G++
Sbjct: 215 AGKGWL 220


>gi|149189037|ref|ZP_01867326.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA
           family) [Vibrio shilonii AK1]
 gi|148837223|gb|EDL54171.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA
           family) [Vibrio shilonii AK1]
          Length = 199

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225
            L+ RE++ L+L  DG+T++EIA ++ +S  TV+ Y      K D  +    +
Sbjct: 139 KLSTRESAVLRLLLDGHTNKEIARRMNISEKTVSTYKRRILDKYDVRSVFMLV 191


>gi|187921514|ref|YP_001890546.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187719952|gb|ACD21175.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 213

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           L+++E   LQ+   G +++ I + L +S  TV+++      KL   + ++ I  A R
Sbjct: 150 LSDKELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMHKLGVKSLVELIDLARR 206


>gi|78184142|ref|YP_376577.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168436|gb|ABB25533.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 239

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 38/77 (49%)

Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217
           +    +       +  L+ RE   L+    G +++EIA++L L++ T+   + S   KL+
Sbjct: 148 SRRRPILDGPPLLSDVLSLREEDVLRGLCRGLSNQEIADQLHLAIDTIKHAVTSLLRKLE 207

Query: 218 AVNRIQAIAKAIRFGYI 234
           A +R QA+  A +   +
Sbjct: 208 ARDRTQAVLIAFQHNLV 224


>gi|326333357|ref|ZP_08199604.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325949001|gb|EGD41094.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 253

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188
               + +   L+ +   + +   A   V    +E  ++       LT ++   L L  +G
Sbjct: 107 EATSLVSGVRLVASGHTLFDPEAAAKVVHN--VEERRRMHEVVAELTPQQRRILVLLAEG 164

Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231
            ++ EIA++L L+  TV  ++     KL   +R QA   A + 
Sbjct: 165 ISNREIADRLVLAEKTVKNHITGLLAKLGVSHRTQAALMASQL 207


>gi|298505405|gb|ADI84128.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 216

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221
              +  S+++  LT RE   LQL  +G  ++E+A  L +SV TV +       KL   + 
Sbjct: 141 RRGRPESASSIRLTPREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSI 200

Query: 222 IQAIAKAIRFGY 233
                 AIR G 
Sbjct: 201 ADMTKFAIREGL 212


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.153    0.431 

Lambda     K      H
   0.267   0.0468    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,408,454,909
Number of Sequences: 14124377
Number of extensions: 126766700
Number of successful extensions: 565099
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 24055
Number of HSP's successfully gapped in prelim test: 7966
Number of HSP's that attempted gapping in prelim test: 535411
Number of HSP's gapped (non-prelim): 34195
length of query: 235
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 100
effective length of database: 2,936,002,735
effective search space: 293600273500
effective search space used: 293600273500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 79 (34.8 bits)